Query 027521
Match_columns 222
No_of_seqs 157 out of 686
Neff 5.0
Searched_HMMs 29240
Date Mon Mar 25 18:53:05 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/027521.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/027521hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2lbg_A Major prion protein; co 32.2 45 0.0016 19.6 2.9 20 20-39 4-23 (27)
2 2k4f_A T-cell surface glycopro 25.1 21 0.00071 24.3 0.7 10 213-222 30-39 (57)
3 2fft_A Thylakoid soluble phosp 22.4 38 0.0013 24.9 1.7 11 182-193 73-83 (84)
4 2lck_A Mitochondrial uncouplin 22.1 1.5E+02 0.0052 24.8 5.8 35 68-102 177-215 (303)
5 2lck_A Mitochondrial uncouplin 15.4 1.6E+02 0.0054 24.6 4.3 34 70-103 82-118 (303)
6 2imj_A Hypothetical protein DU 13.3 35 0.0012 28.0 -0.4 18 76-93 16-33 (166)
7 1bts_A BAND 3 anion transport 13.1 95 0.0032 17.8 1.5 15 113-127 7-21 (26)
8 2elu_A Zinc finger protein 406 12.6 49 0.0017 20.4 0.2 18 73-90 19-36 (37)
9 1pk8_A RAT synapsin I; ATP bin 10.9 54 0.0018 30.5 0.0 19 179-197 71-89 (422)
10 1okc_A ADP, ATP carrier protei 9.8 3.5E+02 0.012 22.2 4.7 32 69-100 187-220 (297)
No 1
>2lbg_A Major prion protein; conserved hydrophobic region, membrane protei; NMR {Homo sapiens}
Probab=32.25 E-value=45 Score=19.55 Aligned_cols=20 Identities=35% Similarity=0.489 Sum_probs=15.4
Q ss_pred hhHHHHHHHHHHHHHHHHhh
Q 027521 20 GGAFGMGAVGGAAFHFLKGT 39 (222)
Q Consensus 20 G~af~mG~v~G~~~g~~~G~ 39 (222)
-+++..|++.|++.+.+.|.
T Consensus 4 ~ga~AAGaVvGglGgy~lg~ 23 (27)
T 2lbg_A 4 AGAAAAGAVVGGLGGYMLGS 23 (27)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred hhhhhhhhhhhhhHHHHHHH
Confidence 35678889999888887764
No 2
>2k4f_A T-cell surface glycoprotein CD3 epsilon chain; ITAM, TCR, membrane bound protein, bicelle, immunoglobulin domain, membrane, phosphoprotein; NMR {Mus musculus}
Probab=25.07 E-value=21 Score=24.31 Aligned_cols=10 Identities=50% Similarity=1.175 Sum_probs=8.7
Q ss_pred CCCCCCCCCC
Q 027521 213 APPVPSFEYK 222 (222)
Q Consensus 213 ~~~~~~~~~~ 222 (222)
+|||||=||.
T Consensus 30 pPPVPNPDYE 39 (57)
T 2k4f_A 30 PPPVPNPDYE 39 (57)
T ss_dssp CCCCCSGGGC
T ss_pred CCCCCCCCcc
Confidence 8999999983
No 3
>2fft_A Thylakoid soluble phosphoprotein; TSP9, structural genomics, PSI, protein structure initiative, center for eukaryotic structural genomics, CESG; NMR {Spinacia oleracea} SCOP: g.88.1.1
Probab=22.43 E-value=38 Score=24.87 Aligned_cols=11 Identities=45% Similarity=0.957 Sum_probs=8.1
Q ss_pred CCCccccccCCC
Q 027521 182 SSSWFGGFFGGK 193 (222)
Q Consensus 182 ~~~~~~~~f~~~ 193 (222)
++| |||||.+|
T Consensus 73 gGG-fGGLFaKK 83 (84)
T 2fft_A 73 GGV-FGGLFAKK 83 (84)
T ss_dssp CCS-SSSSSCCC
T ss_pred CCc-ccceeccC
Confidence 344 89999854
No 4
>2lck_A Mitochondrial uncoupling protein 2; membrane protein, proton translocator, mitochondrial carrier transport protein, structural genomics; NMR {Mus musculus}
Probab=22.11 E-value=1.5e+02 Score=24.75 Aligned_cols=35 Identities=17% Similarity=0.035 Sum_probs=20.8
Q ss_pred HHHHHHHHHHHHHHHhhc----cCChhHHHHHHHHHHHH
Q 027521 68 VWGGLFSTFDCTMVYLRQ----KEDPWNSIIAGAATGGF 102 (222)
Q Consensus 68 ~~G~lfs~~ec~l~~~R~----KdD~~NsiiAG~~TGal 102 (222)
..+..|...|..-+.+.. +++.+..+++|+++|.+
T Consensus 177 ~~~i~f~~ye~~k~~l~~~~~~~~~~~~~~~~g~~ag~~ 215 (303)
T 2lck_A 177 VNCAELVTYDLIKDTLLKANLMTDDLPCHFTSAFGAGFC 215 (303)
T ss_dssp HHHHHHHHHHHHHHTTTTTTSCCSCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhccCCCCchHHHHHHHHHHHHH
Confidence 344556666665555543 24456777888877753
No 5
>2lck_A Mitochondrial uncoupling protein 2; membrane protein, proton translocator, mitochondrial carrier transport protein, structural genomics; NMR {Mus musculus}
Probab=15.44 E-value=1.6e+02 Score=24.63 Aligned_cols=34 Identities=15% Similarity=0.278 Sum_probs=20.8
Q ss_pred HHHHHHHHHHHHHhhcc---CChhHHHHHHHHHHHHh
Q 027521 70 GGLFSTFDCTMVYLRQK---EDPWNSIIAGAATGGFL 103 (222)
Q Consensus 70 G~lfs~~ec~l~~~R~K---dD~~NsiiAG~~TGall 103 (222)
+..|...|..-+.+... .+.+..+++|+++|++-
T Consensus 82 ~i~f~~ye~~k~~~~~~~~~~~~~~~~~ag~~ag~~~ 118 (303)
T 2lck_A 82 SVRIGLYDSVKQFYTKGSEHAGIGSRLLAGSTTGALA 118 (303)
T ss_dssp HHTTTHHHHHHHHHSCCCSSCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhcCCcCCcHHHHHHHHHHHHHHH
Confidence 33444555554444433 45677888999888753
No 6
>2imj_A Hypothetical protein DUF1348; alpha beta protein, structural genomics, PSI-2, protein structure initiative; 1.50A {Pseudomonas fluorescens pf-5} SCOP: d.17.4.23
Probab=13.26 E-value=35 Score=27.98 Aligned_cols=18 Identities=33% Similarity=0.532 Sum_probs=15.2
Q ss_pred HHHHHHHhhccCChhHHH
Q 027521 76 FDCTMVYLRQKEDPWNSI 93 (222)
Q Consensus 76 ~ec~l~~~R~KdD~~Nsi 93 (222)
.|.+++++|-.+|.||+=
T Consensus 16 ~EtA~~KVr~AEDaWNsr 33 (166)
T 2imj_A 16 RESAIEKIRLAEDGWNSR 33 (166)
T ss_dssp HHHHHHHHHHHHHHHTTT
T ss_pred HHHHHHHHHHHHhhhccc
Confidence 478889999999999974
No 7
>1bts_A BAND 3 anion transport protein; transmembrane protein; NMR {Homo sapiens} SCOP: j.35.1.1 PDB: 1btt_A
Probab=13.07 E-value=95 Score=17.83 Aligned_cols=15 Identities=33% Similarity=0.452 Sum_probs=7.0
Q ss_pred HHHHHHHHHHHHHHH
Q 027521 113 SRSALFGGVLLALIE 127 (222)
Q Consensus 113 ~~sAl~Gg~~~alie 127 (222)
+.++.++|++++++.
T Consensus 7 i~s~ai~Gi~f~lf~ 21 (26)
T 1bts_A 7 LISTAVQGILFALLG 21 (26)
T ss_dssp HHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHh
Confidence 344444555555443
No 8
>2elu_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2elw_A
Probab=12.57 E-value=49 Score=20.42 Aligned_cols=18 Identities=22% Similarity=0.397 Sum_probs=14.6
Q ss_pred HHHHHHHHHHhhccCChh
Q 027521 73 FSTFDCTMVYLRQKEDPW 90 (222)
Q Consensus 73 fs~~ec~l~~~R~KdD~~ 90 (222)
|+-+.++++++|..+|+.
T Consensus 19 ysdvknlikhire~hd~~ 36 (37)
T 2elu_A 19 YSDVKNLIKHIRDAHDPQ 36 (37)
T ss_dssp CSSHHHHHHHHHHTTCCC
T ss_pred HHHHHHHHHHHHHhcCCC
Confidence 566788899999998863
No 9
>1pk8_A RAT synapsin I; ATP binding, ATP grAsp, calcium (II) ION, membrane protein; HET: ATP; 2.10A {Rattus norvegicus} SCOP: c.30.1.5 d.142.1.3 PDB: 1px2_A*
Probab=10.94 E-value=54 Score=30.47 Aligned_cols=19 Identities=21% Similarity=0.365 Sum_probs=0.0
Q ss_pred CCCCCCccccccCCCcccc
Q 027521 179 SSSSSSWFGGFFGGKKEDQ 197 (222)
Q Consensus 179 ~~~~~~~~~~~f~~~~~~~ 197 (222)
+++++|||.++=.--|+..
T Consensus 71 ~~~~~~~~~s~~~~~~~~~ 89 (422)
T 1pk8_A 71 SSGGGGFFSSLSNAVKQTT 89 (422)
T ss_dssp -------------------
T ss_pred CCCCcchhhHHHHHHHHHH
Confidence 4456779999876655444
No 10
>1okc_A ADP, ATP carrier protein heart isoform T1; mitochondrial transporter, nucleotide translocation, membrane protein, transport; HET: CXT CDL LDM PC1; 2.2A {Bos taurus} SCOP: f.42.1.1 PDB: 2c3e_A*
Probab=9.81 E-value=3.5e+02 Score=22.25 Aligned_cols=32 Identities=13% Similarity=0.111 Sum_probs=15.6
Q ss_pred HHHHHHHHHHHHHHhhc--cCChhHHHHHHHHHH
Q 027521 69 WGGLFSTFDCTMVYLRQ--KEDPWNSIIAGAATG 100 (222)
Q Consensus 69 ~G~lfs~~ec~l~~~R~--KdD~~NsiiAG~~TG 100 (222)
.+..|...|..-+.++. +.+.+..+++|+++|
T Consensus 187 ~~~~f~~ye~~k~~~~~~~~~~~~~~~~~g~~ag 220 (297)
T 1okc_A 187 RAAYFGVYDTAKGMLPDPKNVHIIVSWMIAQTVT 220 (297)
T ss_dssp HHHHHHHHHHHHHSSCGGGCSCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhccCCCccHHHHHHHHHHHH
Confidence 34455556655554443 233444555555443
Done!