BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 027522
(222 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2ECE|A Chain A, X-Ray Structure Of Hypothetical Selenium-Binding Protein
From Sulfolobus Tokodaii, St0059
Length = 462
Score = 156 bits (395), Expect = 8e-39, Method: Compositional matrix adjust.
Identities = 94/231 (40%), Positives = 140/231 (60%), Gaps = 39/231 (16%)
Query: 1 MQIRFLHDPSKDIGFVGCALA----STMVRFSKTQDGSWNHEVAISVKSLKVQNWILPEM 56
+++R LHDP+K +GF+ ++ S+ + +DG WN E I + + ++ LPE+
Sbjct: 254 LELRPLHDPTKLMGFINMVVSLKDLSSSIWLWFYEDGKWNAEKVIEIPAEPLEG-NLPEI 312
Query: 57 -------PGLITDFLISLDDRFLYFSNWLHGDIRQYNIEDPKNPVLTGQIWVGGLFRKGS 109
P L+TD ISLDD+FLY S W G++RQY+I +P PVLTG++ +GG+F
Sbjct: 313 LKPFKAVPPLVTDIDISLDDKFLYLSLWGIGEVRQYDISNPFKPVLTGKVKLGGIF---- 368
Query: 110 PVVAVTDDGQPYQSDVPEVQGHRLRGGPQMIQLSLDGKRLYVTNSLFSAWDCQFYPE-LK 168
+++D P GH+L G PQM+++S DG+R+YVTNSL+S WD QFYPE LK
Sbjct: 369 -----------HRADHP--AGHKLTGAPQMLEISRDGRRVYVTNSLYSTWDNQFYPEGLK 415
Query: 169 EKGSHMLQIDVNSEKGGMAINPNFFVDFEAEPDGPALAHEMRYPGGDCTSD 219
M++++ N GG+ I+ FFVDF G A +H++R GGD +SD
Sbjct: 416 ---GWMVKLNANPS-GGLEIDKEFFVDF-----GEARSHQVRLSGGDASSD 457
>pdb|2VVT|A Chain A, Glutamate Racemase (Muri) From E. Faecalis In Complex With
A 9-Benzyl Purine Inhibitor
pdb|2VVT|B Chain B, Glutamate Racemase (Muri) From E. Faecalis In Complex With
A 9-Benzyl Purine Inhibitor
Length = 290
Score = 31.2 bits (69), Expect = 0.53, Method: Compositional matrix adjust.
Identities = 27/115 (23%), Positives = 48/115 (41%), Gaps = 9/115 (7%)
Query: 105 FRKGSPVVAVTDDGQPYQSDVPEVQGHRLRGGPQMIQLSLDGKRLYVTNSLFSAWDCQFY 164
+ +P + VT P + E +R +++ +L +L ++L C Y
Sbjct: 151 IKSKAPAIEVTSLACPKFVPIVESNQYRSSVAKKIVAETLQALQLKGLDTLI--LGCTHY 208
Query: 165 PELKE-----KGSHMLQIDVNSEK-GGMAINPNFFVDFEAEPDGPALAHEMRYPG 213
P L+ GSH+ ID +E G +++ ++F D P+ P HE G
Sbjct: 209 PLLRPVIQNVMGSHVTLIDSGAETVGEVSMLLDYF-DIAHTPEAPTQPHEFYTTG 262
>pdb|2JFO|A Chain A, Crystal Structure Of Enterococcus Faecalis Glutamate
Racemase In Complex With D- And L-Glutamate
pdb|2JFO|B Chain B, Crystal Structure Of Enterococcus Faecalis Glutamate
Racemase In Complex With D- And L-Glutamate
pdb|2JFP|A Chain A, Crystal Structure Of Enterococcus Faecalis Glutamate
Racemase In Complex With D-Glutamate
pdb|2JFP|B Chain B, Crystal Structure Of Enterococcus Faecalis Glutamate
Racemase In Complex With D-Glutamate
Length = 293
Score = 30.8 bits (68), Expect = 0.55, Method: Compositional matrix adjust.
Identities = 27/115 (23%), Positives = 48/115 (41%), Gaps = 9/115 (7%)
Query: 105 FRKGSPVVAVTDDGQPYQSDVPEVQGHRLRGGPQMIQLSLDGKRLYVTNSLFSAWDCQFY 164
+ +P + VT P + E +R +++ +L +L ++L C Y
Sbjct: 151 IKSKAPAIEVTSLACPKFVPIVESNQYRSSVAKKIVAETLQALQLKGLDTLI--LGCTHY 208
Query: 165 PELKE-----KGSHMLQIDVNSEK-GGMAINPNFFVDFEAEPDGPALAHEMRYPG 213
P L+ GSH+ ID +E G +++ ++F D P+ P HE G
Sbjct: 209 PLLRPVIQNVMGSHVTLIDSGAETVGEVSMLLDYF-DIAHTPEAPTQPHEFYTTG 262
>pdb|1HF2|A Chain A, Crystal Structure Of The Bacterial Cell-Division Inhibitor
Minc From T. Maritima
pdb|1HF2|B Chain B, Crystal Structure Of The Bacterial Cell-Division Inhibitor
Minc From T. Maritima
pdb|1HF2|C Chain C, Crystal Structure Of The Bacterial Cell-Division Inhibitor
Minc From T. Maritima
pdb|1HF2|D Chain D, Crystal Structure Of The Bacterial Cell-Division Inhibitor
Minc From T. Maritima
Length = 210
Score = 28.5 bits (62), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 17/71 (23%), Positives = 35/71 (49%), Gaps = 5/71 (7%)
Query: 82 IRQY-NIEDPKNPVLTGQIWVGGLFRKGSPVVAVTDDGQPYQSDVPEVQGHRLRGGPQMI 140
I+ Y N+E+ N + +GG F KG + + ++ + D+P + H G ++
Sbjct: 15 IKDYQNLEEVLNAISARITQMGGFFAKGDRISLMIENHNKHSQDIPRIVSHLRNLGLEVS 74
Query: 141 QL----SLDGK 147
Q+ +++GK
Sbjct: 75 QILVGSTVEGK 85
>pdb|3U7J|A Chain A, Crystal Structure Of Ribose-5-Phosphate Isomerase A From
Burkholderia Thailandensis
pdb|3UW1|A Chain A, Crystal Structure Of Ribose-5-Phosphate Isomerase A From
Burkholderia Thailandensis With Ribose-5-Phosphate
Length = 239
Score = 27.3 bits (59), Expect = 6.0, Method: Compositional matrix adjust.
Identities = 21/73 (28%), Positives = 35/73 (47%), Gaps = 5/73 (6%)
Query: 108 GSPVVAVTDDGQPYQSD----VPEVQGHRLRGGPQMIQLSLDGKRLYVTNSLFSAWDCQF 163
G PV+ V DG PY +D + +V+G R+ P+ ++ +++G VT LF+
Sbjct: 164 GVPVLRVKQDGTPYVTDNGNEILDVKGLRID-DPRALEAAINGWPGVVTVGLFAQRGADL 222
Query: 164 YPELKEKGSHMLQ 176
E G L+
Sbjct: 223 CLLGTEHGVETLR 235
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.321 0.140 0.445
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 7,789,855
Number of Sequences: 62578
Number of extensions: 339511
Number of successful extensions: 651
Number of sequences better than 100.0: 6
Number of HSP's better than 100.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 645
Number of HSP's gapped (non-prelim): 6
length of query: 222
length of database: 14,973,337
effective HSP length: 95
effective length of query: 127
effective length of database: 9,028,427
effective search space: 1146610229
effective search space used: 1146610229
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 49 (23.5 bits)