Query 027522
Match_columns 222
No_of_seqs 175 out of 613
Neff 4.8
Searched_HMMs 46136
Date Fri Mar 29 11:11:21 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/027522.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/027522hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0918 Selenium-binding prote 100.0 1.2E-82 2.6E-87 590.0 18.9 222 1-222 255-476 (476)
2 PF05694 SBP56: 56kDa selenium 100.0 2.3E-76 4.9E-81 555.0 16.1 207 1-222 248-461 (461)
3 COG2706 3-carboxymuconate cycl 100.0 1.1E-33 2.4E-38 259.2 17.7 133 5-190 196-331 (346)
4 PF10282 Lactonase: Lactonase, 100.0 4.8E-28 1E-32 219.1 18.6 134 5-190 197-332 (345)
5 PRK11028 6-phosphogluconolacto 99.9 1.9E-21 4.1E-26 172.2 18.9 143 4-201 179-323 (330)
6 PF10282 Lactonase: Lactonase, 99.6 3.5E-14 7.6E-19 128.8 21.2 153 5-215 149-304 (345)
7 PRK11028 6-phosphogluconolacto 99.6 1.6E-14 3.4E-19 128.1 18.2 138 5-193 131-271 (330)
8 COG2706 3-carboxymuconate cycl 99.3 2.1E-10 4.5E-15 106.3 19.6 165 5-200 45-244 (346)
9 TIGR02658 TTQ_MADH_Hv methylam 99.3 1.2E-10 2.7E-15 108.3 14.5 100 10-153 11-123 (352)
10 PF02239 Cytochrom_D1: Cytochr 99.2 9.3E-10 2E-14 102.2 17.1 151 4-200 41-216 (369)
11 PF02239 Cytochrom_D1: Cytochr 99.2 5.6E-10 1.2E-14 103.7 14.0 92 11-153 5-96 (369)
12 TIGR03866 PQQ_ABC_repeats PQQ- 99.1 6.1E-09 1.3E-13 87.5 16.9 134 5-202 162-295 (300)
13 TIGR02658 TTQ_MADH_Hv methylam 99.0 2.2E-08 4.8E-13 93.4 15.4 122 6-186 200-334 (352)
14 PF08450 SGL: SMP-30/Gluconola 98.9 1.3E-07 2.7E-12 81.1 15.4 105 5-154 139-245 (246)
15 TIGR03866 PQQ_ABC_repeats PQQ- 98.8 9.9E-07 2.2E-11 74.0 18.1 99 4-153 77-175 (300)
16 PF08450 SGL: SMP-30/Gluconola 98.6 1.3E-06 2.8E-11 74.8 14.3 132 5-199 45-182 (246)
17 COG3391 Uncharacterized conser 98.6 1.7E-06 3.6E-11 80.4 15.6 109 4-154 164-272 (381)
18 COG3391 Uncharacterized conser 98.6 1.8E-06 3.9E-11 80.2 15.5 122 4-186 120-243 (381)
19 TIGR02276 beta_rpt_yvtn 40-res 98.5 3.5E-07 7.5E-12 58.4 6.2 32 67-101 1-32 (42)
20 PRK02888 nitrous-oxide reducta 98.5 1.9E-06 4.1E-11 85.7 12.8 122 5-161 240-403 (635)
21 PLN02919 haloacid dehalogenase 98.4 1.3E-05 2.8E-10 83.9 16.5 146 5-187 688-838 (1057)
22 PRK02888 nitrous-oxide reducta 98.3 9.6E-06 2.1E-10 80.8 12.9 123 3-153 196-339 (635)
23 PF08662 eIF2A: Eukaryotic tra 98.2 6.9E-05 1.5E-09 63.6 14.9 98 3-154 63-163 (194)
24 PLN02919 haloacid dehalogenase 98.2 4.6E-05 1E-09 79.8 16.2 149 5-196 745-900 (1057)
25 PF07433 DUF1513: Protein of u 98.2 4.2E-05 9E-10 70.6 13.1 103 5-154 10-118 (305)
26 PF06433 Me-amine-dh_H: Methyl 98.1 6.4E-05 1.4E-09 70.3 13.6 100 10-153 1-113 (342)
27 PRK04792 tolB translocation pr 97.9 0.0005 1.1E-08 65.2 15.1 120 4-187 266-387 (448)
28 PRK03629 tolB translocation pr 97.8 0.001 2.2E-08 62.6 15.6 121 5-190 248-372 (429)
29 PRK02889 tolB translocation pr 97.7 0.0014 3.1E-08 61.4 15.2 70 4-88 288-360 (427)
30 PRK01029 tolB translocation pr 97.6 0.0033 7.2E-08 59.5 16.0 36 137-187 329-364 (428)
31 PRK02889 tolB translocation pr 97.5 0.0034 7.3E-08 58.9 15.1 67 5-88 245-314 (427)
32 PRK00178 tolB translocation pr 97.5 0.0021 4.5E-08 59.6 13.3 67 5-87 292-362 (430)
33 PRK04922 tolB translocation pr 97.5 0.0032 7E-08 59.0 14.7 100 4-153 252-354 (433)
34 PRK01742 tolB translocation pr 97.5 0.0029 6.3E-08 59.3 14.3 68 5-88 209-278 (429)
35 TIGR02800 propeller_TolB tol-p 97.5 0.0034 7.4E-08 57.1 14.2 118 5-187 239-359 (417)
36 PRK04792 tolB translocation pr 97.5 0.0038 8.2E-08 59.2 14.5 67 5-87 223-293 (448)
37 PRK04922 tolB translocation pr 97.4 0.0065 1.4E-07 56.9 15.6 69 4-88 296-368 (433)
38 PRK00178 tolB translocation pr 97.4 0.0076 1.6E-07 55.8 15.5 67 5-87 248-318 (430)
39 PF07995 GSDH: Glucose / Sorbo 97.4 0.014 3E-07 53.4 16.9 141 3-180 5-156 (331)
40 PRK01029 tolB translocation pr 97.4 0.0057 1.2E-07 57.9 14.6 71 4-88 285-359 (428)
41 PRK03629 tolB translocation pr 97.4 0.0046 1E-07 58.2 13.8 68 4-87 203-274 (429)
42 KOG1446 Histone H3 (Lys4) meth 97.4 0.01 2.2E-07 54.9 15.3 119 5-186 146-266 (311)
43 TIGR02604 Piru_Ver_Nterm putat 97.3 0.0071 1.5E-07 55.8 14.5 66 4-86 18-96 (367)
44 PRK01742 tolB translocation pr 97.3 0.0066 1.4E-07 56.9 14.4 71 4-89 252-323 (429)
45 TIGR02800 propeller_TolB tol-p 97.3 0.0073 1.6E-07 55.0 14.0 68 4-87 194-265 (417)
46 PRK05137 tolB translocation pr 97.3 0.0064 1.4E-07 56.9 13.9 67 5-87 295-365 (435)
47 COG3490 Uncharacterized protei 97.3 0.0026 5.6E-08 59.2 10.4 104 5-154 73-181 (366)
48 PRK05137 tolB translocation pr 97.3 0.0078 1.7E-07 56.3 13.8 68 4-87 206-277 (435)
49 COG3386 Gluconolactonase [Carb 97.2 0.011 2.3E-07 54.5 13.6 105 5-154 168-275 (307)
50 COG3386 Gluconolactonase [Carb 97.2 0.0029 6.2E-08 58.2 9.9 50 137-202 165-217 (307)
51 cd00200 WD40 WD40 domain, foun 97.2 0.017 3.7E-07 46.0 13.3 99 4-153 182-280 (289)
52 PF06433 Me-amine-dh_H: Methyl 97.2 0.0062 1.3E-07 57.2 11.9 87 5-103 41-138 (342)
53 cd00200 WD40 WD40 domain, foun 97.1 0.052 1.1E-06 43.3 15.2 69 4-89 14-82 (289)
54 PF08662 eIF2A: Eukaryotic tra 97.1 0.045 9.8E-07 46.4 15.4 102 2-153 8-119 (194)
55 PRK04043 tolB translocation pr 97.0 0.058 1.3E-06 51.2 17.5 69 3-87 191-264 (419)
56 KOG0266 WD40 repeat-containing 96.9 0.015 3.3E-07 55.3 12.2 111 5-162 252-364 (456)
57 KOG1539 WD repeat protein [Gen 96.7 0.0092 2E-07 61.3 9.9 62 56-153 575-636 (910)
58 KOG0639 Transducin-like enhanc 96.7 0.0037 8.1E-08 61.6 6.8 98 6-152 472-569 (705)
59 KOG1273 WD40 repeat protein [G 96.7 0.031 6.8E-07 52.6 12.4 68 5-89 29-96 (405)
60 PTZ00420 coronin; Provisional 96.7 0.091 2E-06 52.3 16.4 114 4-162 79-197 (568)
61 PRK04043 tolB translocation pr 96.7 0.03 6.6E-07 53.1 12.4 56 5-78 282-339 (419)
62 KOG0293 WD40 repeat-containing 96.7 0.018 4E-07 55.6 10.7 71 5-89 230-300 (519)
63 KOG0266 WD40 repeat-containing 96.5 0.13 2.7E-06 49.1 15.3 98 4-152 208-306 (456)
64 PTZ00421 coronin; Provisional 96.4 0.11 2.4E-06 50.5 14.7 106 4-153 80-187 (493)
65 PF08309 LVIVD: LVIVD repeat; 96.3 0.022 4.7E-07 38.1 6.5 38 60-100 4-41 (42)
66 KOG0645 WD40 repeat protein [G 96.2 0.55 1.2E-05 43.5 16.9 69 4-88 66-135 (312)
67 KOG2096 WD40 repeat protein [G 96.2 0.081 1.8E-06 50.0 11.8 110 3-153 136-247 (420)
68 KOG0263 Transcription initiati 96.1 0.055 1.2E-06 55.0 11.0 100 3-153 538-638 (707)
69 KOG0315 G-protein beta subunit 96.1 0.061 1.3E-06 49.3 10.3 97 5-153 89-186 (311)
70 KOG0318 WD40 repeat stress pro 96.1 0.12 2.5E-06 51.3 12.9 70 5-89 449-518 (603)
71 KOG2110 Uncharacterized conser 96.1 0.25 5.3E-06 47.1 14.4 75 58-179 174-249 (391)
72 KOG0772 Uncharacterized conser 95.9 0.062 1.3E-06 53.3 10.1 134 5-197 323-456 (641)
73 PF13449 Phytase-like: Esteras 95.6 0.96 2.1E-05 41.3 16.1 127 5-153 25-165 (326)
74 TIGR03606 non_repeat_PQQ dehyd 95.4 0.39 8.4E-06 46.8 13.5 74 4-88 34-124 (454)
75 PTZ00420 coronin; Provisional 95.3 0.93 2E-05 45.3 16.2 67 5-88 131-197 (568)
76 KOG2055 WD40 repeat protein [G 95.3 0.19 4.1E-06 49.1 10.9 33 56-89 343-375 (514)
77 KOG0291 WD40-repeat-containing 95.2 0.42 9.1E-06 49.3 13.5 114 3-153 482-601 (893)
78 COG5276 Uncharacterized conser 95.2 0.88 1.9E-05 42.9 14.5 39 61-102 175-213 (370)
79 KOG4499 Ca2+-binding protein R 95.2 0.19 4.1E-06 46.0 9.9 141 21-216 78-218 (310)
80 COG5276 Uncharacterized conser 95.2 0.14 3.1E-06 48.0 9.3 44 58-104 87-130 (370)
81 KOG4499 Ca2+-binding protein R 95.1 0.48 1E-05 43.5 12.1 86 5-101 163-251 (310)
82 KOG2110 Uncharacterized conser 95.0 0.63 1.4E-05 44.5 13.2 155 5-196 179-347 (391)
83 PF05694 SBP56: 56kDa selenium 95.0 0.59 1.3E-05 45.7 13.1 133 20-194 220-355 (461)
84 KOG0306 WD40-repeat-containing 94.9 0.29 6.3E-06 50.4 11.2 105 5-154 460-569 (888)
85 PF01731 Arylesterase: Arylest 94.9 0.052 1.1E-06 41.4 4.7 32 58-89 54-85 (86)
86 COG0823 TolB Periplasmic compo 94.6 0.4 8.6E-06 46.0 11.0 67 5-87 198-267 (425)
87 TIGR02604 Piru_Ver_Nterm putat 94.6 0.56 1.2E-05 43.3 11.6 63 5-77 77-142 (367)
88 KOG0293 WD40 repeat-containing 94.6 0.18 3.9E-06 49.0 8.4 66 5-89 318-385 (519)
89 PF07433 DUF1513: Protein of u 94.5 0.41 8.8E-06 44.5 10.3 103 56-211 3-106 (305)
90 COG4946 Uncharacterized protei 94.4 0.86 1.9E-05 45.3 12.8 61 58-153 402-462 (668)
91 KOG2096 WD40 repeat protein [G 94.3 0.16 3.4E-06 48.1 7.3 85 58-187 87-171 (420)
92 PTZ00421 coronin; Provisional 94.1 1.4 3.1E-05 42.9 13.9 69 5-89 131-199 (493)
93 KOG1407 WD40 repeat protein [F 94.1 0.3 6.6E-06 45.0 8.6 98 5-153 153-250 (313)
94 PF07995 GSDH: Glucose / Sorbo 93.9 0.6 1.3E-05 42.8 10.2 133 3-153 52-199 (331)
95 KOG0772 Uncharacterized conser 93.8 0.26 5.5E-06 49.1 8.0 72 6-87 275-346 (641)
96 KOG2315 Predicted translation 93.7 0.91 2E-05 45.3 11.6 95 5-153 276-373 (566)
97 PF09826 Beta_propel: Beta pro 93.7 1.2 2.5E-05 44.0 12.4 81 10-106 21-124 (521)
98 TIGR02276 beta_rpt_yvtn 40-res 93.5 0.42 9.1E-06 29.8 6.1 32 9-43 1-32 (42)
99 COG0823 TolB Periplasmic compo 93.5 1.3 2.8E-05 42.6 12.0 100 5-153 243-344 (425)
100 PF05096 Glu_cyclase_2: Glutam 93.4 2 4.4E-05 39.2 12.5 68 12-101 100-167 (264)
101 KOG0771 Prolactin regulatory e 93.3 1.5 3.2E-05 42.3 12.0 31 58-89 282-312 (398)
102 PF03088 Str_synth: Strictosid 93.3 0.24 5.2E-06 38.0 5.5 18 136-153 58-75 (89)
103 KOG0318 WD40 repeat stress pro 93.2 2.5 5.4E-05 42.3 13.6 61 60-153 446-506 (603)
104 KOG1274 WD40 repeat protein [G 93.0 1.4 2.9E-05 46.3 12.0 115 5-162 144-262 (933)
105 KOG2055 WD40 repeat protein [G 93.0 0.98 2.1E-05 44.4 10.4 68 5-88 350-417 (514)
106 KOG0275 Conserved WD40 repeat- 93.0 3.2 7E-05 39.7 13.5 118 6-187 355-472 (508)
107 KOG0271 Notchless-like WD40 re 92.8 0.33 7.1E-06 46.9 6.8 73 61-186 119-191 (480)
108 KOG0973 Histone transcription 92.7 0.72 1.6E-05 48.6 9.7 105 5-154 135-239 (942)
109 KOG4378 Nuclear protein COP1 [ 92.6 1.1 2.4E-05 44.7 10.2 101 3-154 167-270 (673)
110 PRK13616 lipoprotein LpqB; Pro 92.6 2.9 6.2E-05 41.9 13.4 76 4-89 401-477 (591)
111 KOG1446 Histone H3 (Lys4) meth 92.5 1.6 3.5E-05 40.7 10.8 69 5-88 193-262 (311)
112 KOG0973 Histone transcription 92.2 3.5 7.6E-05 43.6 13.9 70 7-87 77-158 (942)
113 PF13449 Phytase-like: Esteras 92.1 9.2 0.0002 34.9 16.0 63 6-77 91-166 (326)
114 KOG2139 WD40 repeat protein [G 91.9 2.8 6E-05 40.4 11.7 120 5-153 244-364 (445)
115 KOG0643 Translation initiation 91.6 5.8 0.00013 37.0 13.1 126 4-195 98-231 (327)
116 KOG2111 Uncharacterized conser 91.4 4.7 0.0001 38.1 12.5 77 58-181 182-259 (346)
117 KOG0771 Prolactin regulatory e 91.3 2.4 5.2E-05 40.9 10.7 30 58-89 187-216 (398)
118 KOG1274 WD40 repeat protein [G 91.3 1 2.2E-05 47.2 8.7 73 1-88 190-262 (933)
119 KOG0289 mRNA splicing factor [ 91.1 4.5 9.8E-05 39.7 12.4 62 58-153 390-451 (506)
120 PF06977 SdiA-regulated: SdiA- 91.0 3.8 8.2E-05 36.8 11.2 90 58-197 22-113 (248)
121 TIGR03606 non_repeat_PQQ dehyd 90.7 3.9 8.5E-05 39.9 11.8 95 58-186 30-130 (454)
122 KOG0272 U4/U6 small nuclear ri 90.3 7.5 0.00016 38.0 13.1 77 3-89 265-376 (459)
123 KOG0291 WD40-repeat-containing 90.2 12 0.00026 39.1 15.0 127 5-205 356-482 (893)
124 PRK13616 lipoprotein LpqB; Pro 89.9 16 0.00035 36.7 15.7 19 135-153 448-466 (591)
125 KOG0272 U4/U6 small nuclear ri 89.6 1.8 3.9E-05 42.1 8.4 146 5-221 223-372 (459)
126 KOG1539 WD repeat protein [Gen 89.5 2.2 4.8E-05 44.5 9.4 65 5-86 582-646 (910)
127 PF02897 Peptidase_S9_N: Proly 89.5 6.5 0.00014 36.2 11.8 60 59-153 125-188 (414)
128 PF03022 MRJP: Major royal jel 89.4 12 0.00026 33.9 13.2 59 22-89 34-97 (287)
129 PF11768 DUF3312: Protein of u 89.3 26 0.00056 35.3 16.6 74 32-153 245-318 (545)
130 KOG1407 WD40 repeat protein [F 89.2 9.4 0.0002 35.5 12.3 116 58-213 148-273 (313)
131 KOG2919 Guanine nucleotide-bin 89.1 2.5 5.4E-05 40.3 8.7 115 5-164 213-329 (406)
132 PLN00181 protein SPA1-RELATED; 89.0 9.8 0.00021 38.6 13.6 71 5-88 489-563 (793)
133 KOG0315 G-protein beta subunit 88.9 13 0.00029 34.4 13.0 82 2-89 21-114 (311)
134 COG4946 Uncharacterized protei 88.8 2.9 6.3E-05 41.7 9.2 58 137-214 404-465 (668)
135 KOG0319 WD40-repeat-containing 88.6 6.4 0.00014 40.7 11.8 75 5-98 25-99 (775)
136 KOG0299 U3 snoRNP-associated p 88.5 9.5 0.00021 37.5 12.4 63 59-154 382-445 (479)
137 smart00135 LY Low-density lipo 88.4 1.3 2.8E-05 27.3 4.5 31 58-88 9-39 (43)
138 PF07676 PD40: WD40-like Beta 88.4 1.4 3E-05 27.5 4.6 27 59-85 10-38 (39)
139 KOG1063 RNA polymerase II elon 88.2 1.8 3.8E-05 44.4 7.5 60 59-153 527-591 (764)
140 KOG0286 G-protein beta subunit 88.2 7.8 0.00017 36.5 11.2 69 5-88 235-303 (343)
141 PF04053 Coatomer_WDAD: Coatom 88.1 3.3 7.3E-05 40.1 9.2 59 69-180 117-175 (443)
142 KOG0639 Transducin-like enhanc 88.0 4.8 0.00011 40.4 10.2 63 58-153 466-528 (705)
143 smart00135 LY Low-density lipo 87.5 1.8 3.9E-05 26.6 4.8 30 136-180 10-39 (43)
144 PF01731 Arylesterase: Arylest 87.5 1 2.3E-05 34.3 4.3 18 136-153 55-72 (86)
145 KOG0282 mRNA splicing factor [ 87.5 4.5 9.7E-05 39.9 9.6 104 5-153 348-451 (503)
146 PLN00181 protein SPA1-RELATED; 87.3 30 0.00066 35.1 15.8 70 4-89 537-607 (793)
147 KOG2048 WD40 repeat protein [G 87.2 11 0.00023 38.8 12.2 107 5-153 388-494 (691)
148 KOG0645 WD40 repeat protein [G 87.1 26 0.00057 32.7 15.1 115 5-178 20-135 (312)
149 KOG4497 Uncharacterized conser 87.0 1.9 4.2E-05 41.2 6.6 99 38-176 73-171 (447)
150 KOG2106 Uncharacterized conser 86.9 12 0.00026 37.6 12.2 32 58-90 448-479 (626)
151 PF06977 SdiA-regulated: SdiA- 86.9 23 0.00049 31.8 16.2 107 5-153 27-136 (248)
152 KOG0296 Angio-associated migra 86.8 25 0.00053 34.0 13.8 78 10-88 95-178 (399)
153 PF09826 Beta_propel: Beta pro 86.7 5.2 0.00011 39.5 9.8 57 61-154 15-71 (521)
154 KOG2314 Translation initiation 86.2 6.4 0.00014 39.9 10.0 119 3-177 449-572 (698)
155 PF02333 Phytase: Phytase; In 85.9 18 0.00039 34.7 12.6 78 60-185 158-242 (381)
156 KOG0918 Selenium-binding prote 85.8 4.2 9.1E-05 39.7 8.3 70 5-77 317-408 (476)
157 KOG0640 mRNA cleavage stimulat 85.7 9.2 0.0002 36.5 10.3 67 5-86 222-289 (430)
158 KOG2048 WD40 repeat protein [G 85.6 9 0.00019 39.2 10.8 31 58-89 476-506 (691)
159 KOG0288 WD40 repeat protein Ti 85.2 6.7 0.00014 38.3 9.3 83 56-187 340-422 (459)
160 KOG0646 WD40 repeat protein [G 84.9 18 0.00039 35.6 12.2 106 4-153 128-236 (476)
161 KOG2139 WD40 repeat protein [G 84.7 19 0.00041 35.0 12.0 117 5-186 201-317 (445)
162 PF00400 WD40: WD domain, G-be 84.5 3.4 7.3E-05 25.0 4.9 28 58-86 12-39 (39)
163 KOG0279 G protein beta subunit 84.2 10 0.00022 35.5 9.7 103 5-153 198-302 (315)
164 COG3490 Uncharacterized protei 84.2 7.5 0.00016 36.7 8.9 58 6-77 120-181 (366)
165 KOG2394 WD40 protein DMR-N9 [G 84.1 2.6 5.7E-05 42.3 6.3 72 5-96 296-367 (636)
166 KOG0271 Notchless-like WD40 re 84.0 6.1 0.00013 38.4 8.5 68 4-88 372-439 (480)
167 KOG0647 mRNA export protein (c 83.9 16 0.00034 34.6 10.9 71 5-89 33-103 (347)
168 PF01436 NHL: NHL repeat; Int 83.3 3.9 8.5E-05 24.4 4.6 26 59-85 3-28 (28)
169 PF15492 Nbas_N: Neuroblastoma 82.9 11 0.00025 34.8 9.5 59 63-154 3-63 (282)
170 COG5354 Uncharacterized protei 82.8 23 0.0005 35.5 12.1 96 5-153 280-378 (561)
171 KOG2321 WD40 repeat protein [G 82.7 1.7 3.6E-05 44.0 4.3 35 55-89 49-83 (703)
172 KOG3881 Uncharacterized conser 82.6 3.6 7.9E-05 39.7 6.4 62 58-153 248-309 (412)
173 KOG0289 mRNA splicing factor [ 82.6 42 0.00091 33.2 13.5 59 60-153 350-408 (506)
174 KOG2394 WD40 protein DMR-N9 [G 82.4 1.6 3.5E-05 43.7 4.1 29 59-88 292-320 (636)
175 KOG3881 Uncharacterized conser 81.9 5.6 0.00012 38.4 7.3 80 56-186 201-281 (412)
176 PF00930 DPPIV_N: Dipeptidyl p 80.9 6.7 0.00014 35.8 7.4 17 137-153 45-61 (353)
177 KOG1009 Chromatin assembly com 80.7 8.2 0.00018 37.5 8.1 34 58-95 124-157 (434)
178 PF02333 Phytase: Phytase; In 80.4 33 0.00072 33.0 12.0 86 5-101 213-301 (381)
179 KOG0640 mRNA cleavage stimulat 80.3 9.1 0.0002 36.5 8.0 105 6-153 119-235 (430)
180 PF11768 DUF3312: Protein of u 80.0 12 0.00025 37.6 9.1 66 5-89 265-330 (545)
181 COG2133 Glucose/sorbosone dehy 79.3 26 0.00057 33.9 11.0 105 24-153 149-257 (399)
182 KOG1520 Predicted alkaloid syn 78.8 7 0.00015 37.5 6.9 65 58-153 219-283 (376)
183 PF00930 DPPIV_N: Dipeptidyl p 78.5 53 0.0012 29.9 12.7 100 8-153 244-346 (353)
184 KOG0321 WD40 repeat-containing 78.4 18 0.00038 37.2 9.8 28 61-89 275-302 (720)
185 KOG2919 Guanine nucleotide-bin 78.2 30 0.00065 33.2 10.7 107 3-153 162-269 (406)
186 KOG0647 mRNA export protein (c 77.7 5.7 0.00012 37.4 5.8 63 59-153 29-91 (347)
187 PF13360 PQQ_2: PQQ-like domai 77.4 39 0.00084 27.8 12.5 27 142-186 208-234 (238)
188 KOG1034 Transcriptional repres 77.2 4.2 9.1E-05 38.7 4.9 72 3-87 311-382 (385)
189 KOG2111 Uncharacterized conser 77.1 32 0.00069 32.7 10.6 83 3-90 161-258 (346)
190 KOG0295 WD40 repeat-containing 76.9 75 0.0016 30.8 16.1 145 12-221 247-403 (406)
191 KOG0308 Conserved WD40 repeat- 75.8 28 0.0006 35.9 10.4 106 4-153 122-232 (735)
192 COG4247 Phy 3-phytase (myo-ino 75.7 72 0.0016 30.0 13.3 35 60-95 155-193 (364)
193 KOG0263 Transcription initiati 75.5 8.5 0.00018 39.7 6.8 69 5-90 583-651 (707)
194 KOG1273 WD40 repeat protein [G 75.1 12 0.00027 35.7 7.3 69 5-89 159-227 (405)
195 TIGR03300 assembly_YfgL outer 75.0 64 0.0014 29.1 12.1 20 68-88 240-259 (377)
196 KOG0265 U5 snRNP-specific prot 73.8 55 0.0012 31.0 11.1 33 58-91 48-80 (338)
197 KOG0283 WD40 repeat-containing 73.6 38 0.00082 35.2 10.9 76 6-101 416-491 (712)
198 TIGR03118 PEPCTERM_chp_1 conse 73.5 84 0.0018 29.9 12.3 82 9-105 149-243 (336)
199 PF03088 Str_synth: Strictosid 73.4 7 0.00015 30.0 4.5 32 58-89 57-88 (89)
200 KOG1063 RNA polymerase II elon 73.4 62 0.0013 33.7 12.2 112 6-159 274-391 (764)
201 KOG0303 Actin-binding protein 73.3 54 0.0012 32.2 11.3 72 5-96 137-208 (472)
202 COG3823 Glutamine cyclotransfe 73.2 14 0.00031 33.5 6.9 61 71-153 187-247 (262)
203 KOG0316 Conserved WD40 repeat- 73.2 46 0.001 30.8 10.3 72 70-195 155-232 (307)
204 KOG0276 Vesicle coat complex C 72.8 66 0.0014 33.4 12.2 61 69-182 434-494 (794)
205 KOG1963 WD40 repeat protein [G 72.2 54 0.0012 34.5 11.6 99 5-153 211-311 (792)
206 PF13360 PQQ_2: PQQ-like domai 71.3 56 0.0012 26.8 13.2 75 10-101 75-150 (238)
207 PF10647 Gmad1: Lipoprotein Lp 70.9 74 0.0016 28.0 14.3 35 59-93 113-149 (253)
208 PF15492 Nbas_N: Neuroblastoma 69.4 46 0.001 30.9 9.5 70 5-88 3-73 (282)
209 KOG0294 WD40 repeat-containing 67.9 1.1E+02 0.0024 29.2 11.8 30 59-89 129-158 (362)
210 COG2319 FOG: WD40 repeat [Gene 67.8 67 0.0015 26.3 14.1 68 5-87 161-228 (466)
211 TIGR03118 PEPCTERM_chp_1 conse 67.7 1.2E+02 0.0025 29.0 13.0 74 5-87 28-117 (336)
212 KOG0290 Conserved WD40 repeat- 67.5 56 0.0012 31.0 9.7 32 60-91 199-230 (364)
213 COG3204 Uncharacterized protei 66.9 1.2E+02 0.0025 28.7 15.1 120 5-181 91-213 (316)
214 KOG0279 G protein beta subunit 66.8 48 0.001 31.1 9.1 32 58-89 16-47 (315)
215 COG4590 ABC-type uncharacteriz 66.6 22 0.00048 35.7 7.3 137 5-153 226-376 (733)
216 KOG1520 Predicted alkaloid syn 66.5 27 0.00059 33.6 7.7 18 136-153 220-237 (376)
217 PF05096 Glu_cyclase_2: Glutam 66.4 1.1E+02 0.0023 28.1 13.2 131 12-217 56-188 (264)
218 KOG0283 WD40 repeat-containing 66.2 35 0.00077 35.4 8.9 61 58-153 410-470 (712)
219 KOG1445 Tumor-specific antigen 65.1 8.5 0.00019 39.8 4.2 67 5-87 683-749 (1012)
220 TIGR03032 conserved hypothetic 64.9 34 0.00073 32.5 7.9 48 70-154 213-260 (335)
221 KOG2314 Translation initiation 63.7 34 0.00074 34.9 8.0 51 70-153 459-511 (698)
222 KOG0278 Serine/threonine kinas 63.4 46 0.001 31.1 8.3 66 7-88 232-297 (334)
223 TIGR02171 Fb_sc_TIGR02171 Fibr 63.2 32 0.00068 36.7 8.0 36 141-186 356-391 (912)
224 KOG3914 WD repeat protein WDR4 63.1 1.2E+02 0.0026 29.5 11.2 98 6-153 69-170 (390)
225 KOG0322 G-protein beta subunit 63.0 20 0.00043 33.5 5.9 52 24-88 229-281 (323)
226 KOG4547 WD40 repeat-containing 62.5 1.4E+02 0.0031 30.2 12.0 29 58-89 145-173 (541)
227 KOG0295 WD40 repeat-containing 62.1 12 0.00025 36.2 4.3 31 58-89 335-365 (406)
228 COG5354 Uncharacterized protei 61.1 37 0.00081 34.1 7.7 70 4-89 320-396 (561)
229 PF03022 MRJP: Major royal jel 59.7 66 0.0014 29.1 8.7 66 59-154 187-255 (287)
230 KOG0646 WD40 repeat protein [G 59.0 47 0.001 32.9 7.9 79 5-88 223-307 (476)
231 PF08553 VID27: VID27 cytoplas 58.9 38 0.00083 35.6 7.7 57 61-153 581-637 (794)
232 PF02897 Peptidase_S9_N: Proly 58.5 1.5E+02 0.0032 27.2 16.5 60 4-78 128-190 (414)
233 KOG0273 Beta-transducin family 57.5 1.9E+02 0.0042 29.0 11.8 95 8-153 418-512 (524)
234 KOG0288 WD40 repeat protein Ti 57.3 27 0.00059 34.2 5.9 61 60-153 390-450 (459)
235 KOG1034 Transcriptional repres 56.8 34 0.00073 32.8 6.4 67 66-179 316-382 (385)
236 KOG2106 Uncharacterized conser 55.7 97 0.0021 31.4 9.5 65 5-85 453-518 (626)
237 PRK11138 outer membrane biogen 55.3 1.4E+02 0.003 27.5 10.1 19 68-87 255-273 (394)
238 cd04480 RPA1_DBD_A_like RPA1_D 55.1 57 0.0012 23.8 6.3 64 129-198 17-82 (86)
239 PF08954 DUF1900: Domain of un 54.0 27 0.00059 28.7 4.7 33 62-95 15-47 (136)
240 KOG0649 WD40 repeat protein [G 53.1 1E+02 0.0022 28.8 8.7 74 4-89 15-90 (325)
241 COG4257 Vgb Streptogramin lyas 52.8 82 0.0018 29.9 8.1 75 59-187 63-137 (353)
242 KOG0643 Translation initiation 52.5 2.1E+02 0.0045 27.0 13.1 96 6-153 17-112 (327)
243 KOG0650 WD40 repeat nucleolar 51.7 86 0.0019 32.4 8.6 98 5-153 527-626 (733)
244 PF12913 SH3_6: SH3 domain of 51.3 15 0.00033 25.9 2.4 23 138-160 30-52 (54)
245 KOG0321 WD40 repeat-containing 50.9 86 0.0019 32.5 8.5 108 2-153 54-163 (720)
246 PF14870 PSII_BNR: Photosynthe 49.5 1.2E+02 0.0026 28.1 8.7 22 58-79 145-166 (302)
247 KOG0650 WD40 repeat nucleolar 49.3 1.4E+02 0.0031 30.9 9.7 43 58-104 401-443 (733)
248 KOG0296 Angio-associated migra 49.1 1.1E+02 0.0023 29.7 8.4 67 3-87 331-397 (399)
249 COG3204 Uncharacterized protei 49.0 2E+02 0.0044 27.1 10.1 42 58-103 86-127 (316)
250 PRK10115 protease 2; Provision 49.0 2.1E+02 0.0046 29.2 11.1 18 60-77 129-146 (686)
251 KOG0306 WD40-repeat-containing 48.7 1.1E+02 0.0024 32.3 9.0 66 5-87 514-579 (888)
252 PF10647 Gmad1: Lipoprotein Lp 47.9 1.9E+02 0.0042 25.3 14.2 17 137-153 114-130 (253)
253 PF05787 DUF839: Bacterial pro 47.6 3E+02 0.0065 27.4 12.1 14 140-153 507-520 (524)
254 TIGR03300 assembly_YfgL outer 47.5 81 0.0018 28.5 7.2 30 68-101 64-93 (377)
255 KOG1408 WD40 repeat protein [F 46.8 42 0.00092 35.4 5.7 30 60-89 81-111 (1080)
256 KOG4497 Uncharacterized conser 46.2 69 0.0015 31.0 6.7 58 5-78 97-154 (447)
257 KOG0282 mRNA splicing factor [ 45.9 1.6E+02 0.0034 29.5 9.2 113 7-186 222-334 (503)
258 KOG3914 WD repeat protein WDR4 44.4 69 0.0015 31.0 6.4 29 58-87 152-180 (390)
259 COG4590 ABC-type uncharacteriz 44.3 23 0.00049 35.7 3.3 30 58-89 221-250 (733)
260 KOG0292 Vesicle coat complex C 43.8 4.7E+02 0.01 28.6 13.8 70 5-89 212-281 (1202)
261 PF13970 DUF4221: Domain of un 43.2 2.5E+02 0.0055 25.4 10.0 85 3-101 47-132 (333)
262 PF05935 Arylsulfotrans: Aryls 42.3 3.3E+02 0.0072 26.4 12.6 125 59-192 272-405 (477)
263 COG2319 FOG: WD40 repeat [Gene 41.7 2E+02 0.0042 23.6 13.3 68 8-89 119-187 (466)
264 KOG0268 Sof1-like rRNA process 41.0 1E+02 0.0022 30.1 7.0 34 59-93 189-222 (433)
265 KOG0299 U3 snoRNP-associated p 40.9 99 0.0022 30.7 7.0 28 60-88 145-172 (479)
266 KOG1354 Serine/threonine prote 40.6 50 0.0011 32.0 4.9 85 7-93 221-306 (433)
267 KOG0319 WD40-repeat-containing 39.4 43 0.00092 34.9 4.4 31 135-186 22-52 (775)
268 KOG0267 Microtubule severing p 39.0 72 0.0016 33.4 6.0 29 5-35 160-188 (825)
269 KOG1036 Mitotic spindle checkp 39.0 43 0.00093 31.6 4.1 30 59-89 15-44 (323)
270 PF05787 DUF839: Bacterial pro 38.9 1.2E+02 0.0026 30.1 7.4 19 58-76 502-520 (524)
271 PF04762 IKI3: IKI3 family; I 38.8 5.2E+02 0.011 27.7 14.5 63 58-153 76-139 (928)
272 KOG4532 WD40-like repeat conta 37.8 2.6E+02 0.0055 26.5 8.8 76 5-95 164-240 (344)
273 KOG0276 Vesicle coat complex C 36.7 3.9E+02 0.0084 28.1 10.5 71 5-90 103-173 (794)
274 KOG1445 Tumor-specific antigen 36.7 2.1E+02 0.0046 30.2 8.7 70 4-87 725-797 (1012)
275 KOG0278 Serine/threonine kinas 35.8 3.8E+02 0.0082 25.2 9.6 68 61-165 148-216 (334)
276 PF08116 Toxin_29: PhTx neurot 35.8 17 0.00036 23.0 0.6 10 210-219 4-13 (31)
277 KOG0267 Microtubule severing p 35.7 30 0.00065 36.1 2.7 89 61-153 158-257 (825)
278 TIGR02171 Fb_sc_TIGR02171 Fibr 35.5 3.1E+02 0.0067 29.6 10.0 66 10-91 318-388 (912)
279 COG2133 Glucose/sorbosone dehy 35.5 1.5E+02 0.0033 28.7 7.3 26 137-177 369-394 (399)
280 KOG0286 G-protein beta subunit 34.8 4.1E+02 0.0089 25.3 11.3 69 5-88 103-174 (343)
281 smart00320 WD40 WD40 repeats. 34.6 71 0.0015 16.4 3.9 26 59-85 14-39 (40)
282 KOG2315 Predicted translation 34.5 1.9E+02 0.0041 29.4 8.0 68 4-88 316-390 (566)
283 KOG0275 Conserved WD40 repeat- 33.1 4.7E+02 0.01 25.5 10.1 77 8-101 401-477 (508)
284 COG3823 Glutamine cyclotransfe 33.0 1.6E+02 0.0035 26.9 6.6 96 67-221 98-193 (262)
285 PF14870 PSII_BNR: Photosynthe 32.8 3.5E+02 0.0076 25.0 9.0 26 137-162 147-174 (302)
286 COG1497 Predicted transcriptio 32.2 1.3E+02 0.0029 27.6 6.0 55 61-115 109-164 (260)
287 KOG4659 Uncharacterized conser 31.9 2.9E+02 0.0063 31.5 9.2 83 58-153 407-492 (1899)
288 PF14251 DUF4346: Domain of un 30.6 67 0.0014 26.3 3.5 46 137-186 9-54 (119)
289 PF14298 DUF4374: Domain of un 30.0 3.4E+02 0.0073 26.8 8.7 66 139-215 279-348 (435)
290 PRK13614 lipoprotein LpqB; Pro 29.7 3.2E+02 0.0069 27.7 8.8 35 59-93 435-471 (573)
291 KOG2103 Uncharacterized conser 29.7 2.3E+02 0.005 30.3 7.9 74 3-88 39-112 (910)
292 PRK13684 Ycf48-like protein; P 29.4 4.5E+02 0.0097 24.1 9.8 17 137-153 217-233 (334)
293 KOG0641 WD40 repeat protein [G 29.3 2.7E+02 0.0059 25.9 7.5 61 58-153 232-292 (350)
294 PF11635 Med16: Mediator compl 29.2 2.5E+02 0.0055 29.0 8.2 77 6-88 55-135 (753)
295 KOG1408 WD40 repeat protein [F 29.1 4.6E+02 0.01 28.1 9.8 63 58-153 597-660 (1080)
296 COG4247 Phy 3-phytase (myo-ino 28.6 2E+02 0.0043 27.2 6.6 22 73-95 117-138 (364)
297 KOG4378 Nuclear protein COP1 [ 28.3 4.1E+02 0.0088 27.2 9.0 72 5-93 214-285 (673)
298 PF12566 DUF3748: Protein of u 27.6 58 0.0013 26.7 2.6 24 129-153 63-86 (122)
299 PF04053 Coatomer_WDAD: Coatom 27.5 1E+02 0.0022 29.9 4.8 17 137-153 35-51 (443)
300 PF05935 Arylsulfotrans: Aryls 26.1 4.5E+02 0.0098 25.4 8.9 82 63-187 153-236 (477)
301 KOG0294 WD40 repeat-containing 25.6 6.1E+02 0.013 24.4 9.6 29 59-89 170-198 (362)
302 PF15390 DUF4613: Domain of un 25.6 5.5E+02 0.012 26.7 9.5 88 31-162 95-186 (671)
303 PF05428 CRF-BP: Corticotropin 25.4 3.7E+02 0.0081 25.4 7.8 30 64-93 63-92 (311)
304 PRK10115 protease 2; Provision 25.4 7.4E+02 0.016 25.3 17.8 29 61-89 175-208 (686)
305 PF02974 Inh: Protease inhibit 25.4 1.1E+02 0.0024 23.4 3.8 32 6-37 56-87 (99)
306 TIGR03503 conserved hypothetic 25.0 2.2E+02 0.0048 27.4 6.5 85 58-149 28-121 (374)
307 KOG0265 U5 snRNP-specific prot 25.0 6.1E+02 0.013 24.2 12.6 67 4-88 52-120 (338)
308 KOG0316 Conserved WD40 repeat- 24.3 5.9E+02 0.013 23.8 10.7 110 58-211 60-174 (307)
309 PF10411 DsbC_N: Disulfide bon 24.1 50 0.0011 22.8 1.5 22 138-160 34-55 (57)
310 KOG2089 Metalloendopeptidase f 24.0 55 0.0012 33.9 2.3 69 74-162 415-483 (718)
311 KOG3503 H/ACA snoRNP complex, 23.8 1.5E+02 0.0033 21.6 3.9 16 14-29 4-19 (64)
312 PF14583 Pectate_lyase22: Olig 23.7 1.1E+02 0.0024 29.6 4.1 28 61-89 354-382 (386)
313 COG4447 Uncharacterized protei 23.1 41 0.0009 31.7 1.1 27 136-162 172-200 (339)
314 KOG1240 Protein kinase contain 23.1 6.5E+02 0.014 28.4 10.0 18 137-154 1198-1215(1431)
315 KOG0284 Polyadenylation factor 23.1 2.4E+02 0.0051 27.9 6.2 31 58-90 181-212 (464)
316 COG5170 CDC55 Serine/threonine 22.6 99 0.0021 29.8 3.5 34 58-93 281-314 (460)
317 PRK15308 putative fimbrial pro 22.1 5.8E+02 0.012 22.9 9.2 40 133-183 77-116 (234)
318 KOG0302 Ribosome Assembly prot 21.9 7.8E+02 0.017 24.3 11.7 54 24-89 236-289 (440)
319 PF07103 DUF1365: Protein of u 21.6 4.6E+02 0.0099 23.5 7.5 27 3-29 108-140 (254)
320 KOG0642 Cell-cycle nuclear pro 20.9 6.2E+02 0.013 25.9 8.8 71 5-87 300-373 (577)
321 KOG1897 Damage-specific DNA bi 20.7 1.2E+03 0.025 25.9 11.6 35 137-187 583-620 (1096)
322 KOG1332 Vesicle coat complex C 20.4 5.1E+02 0.011 24.2 7.5 82 3-89 108-194 (299)
323 KOG2395 Protein involved in va 20.1 8.6E+02 0.019 25.1 9.6 17 137-153 474-490 (644)
No 1
>KOG0918 consensus Selenium-binding protein [Inorganic ion transport and metabolism]
Probab=100.00 E-value=1.2e-82 Score=590.02 Aligned_cols=222 Identities=71% Similarity=1.262 Sum_probs=219.4
Q ss_pred CeEeEEEcCCCCeEEEEeccCceEEEEEeCCCCCeeEEEEEEecCcccccccCCCCCCceeEEEEcCCCCEEEEEeCCCC
Q 027522 1 MQIRFLHDPSKDIGFVGCALASTMVRFSKTQDGSWNHEVAISVKSLKVQNWILPEMPGLITDFLISLDDRFLYFSNWLHG 80 (222)
Q Consensus 1 levr~afhP~g~~aYvv~ELsstV~~~~~d~~g~~~~~q~is~~p~~~~g~~~~~~~~~~adI~iSpDgrfLYvSnRgh~ 80 (222)
|||||+|+|+...+||.|+|+|.|++|++..+++|.++.+|++++.++++|.+++||++++||.||+|+||||||||.||
T Consensus 255 leiRfLh~p~~~~~fvg~Al~s~i~~~~k~~~~tws~~~visvp~~kv~~w~~~eMP~LITDilISmDDRFLYvs~WLHG 334 (476)
T KOG0918|consen 255 LEIRFLHNPSKATGFVGCALSSNIFRFFKNSDDTWSAEVVISVPPLKVENWILPEMPGLITDILISLDDRFLYVSNWLHG 334 (476)
T ss_pred EEeeeccCCCcccceeeeeccCCceeeeeccccccceeEEEecCccccccccCcccchhhheeEEeecCcEEEEEeeeec
Confidence 79999999999999999999999999999767999999999999999999999999999999999999999999999999
Q ss_pred cEEEEEecCCCCCeEEEEEEecceeecCCceeeeeCCCCCCCCCCccccCcccCCCCeeEEECCCCCEEEEEeCCCCccc
Q 027522 81 DIRQYNIEDPKNPVLTGQIWVGGLFRKGSPVVAVTDDGQPYQSDVPEVQGHRLRGGPQMIQLSLDGKRLYVTNSLFSAWD 160 (222)
Q Consensus 81 sI~vf~i~d~~~~~L~~~v~~gG~~~~~~~~~~~~~~~~~~~p~~~~v~G~~~~ggPr~~~lspdGk~LyvaNsl~~~wd 160 (222)
+|+||+|+||.+++|.+||++||++.++++|+|+++|+++.||+.++|+|++++|||+|||||.|||||||||||||+||
T Consensus 335 DirQYdIsDP~n~kLtgQi~lGG~i~~~s~vkvl~~e~~~~~~ea~~vKGrkl~GGPQMlQLSLDGKRLYVt~SLys~WD 414 (476)
T KOG0918|consen 335 DIRQYDISDPKNPKLTGQIFLGGSIQKGSPVKVLEEEGLKKQPEALYVKGRKLRGGPQMLQLSLDGKRLYVTNSLYSAWD 414 (476)
T ss_pred ceeeeccCCCCCcceEEEEEECcEeecCCceEEeccccccCCCccceecCccccCCceeEEeccCCcEEEEEchhhhhhH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccccccccCCcEEEEEEeeCCCCCeeeccceeEecCCCCCCCcceeeeecCCCCcCccccC
Q 027522 161 CQFYPELKEKGSHMLQIDVNSEKGGMAINPNFFVDFEAEPDGPALAHEMRYPGGDCTSDIWI 222 (222)
Q Consensus 161 ~Q~yp~~~s~~~~i~~~dvd~~~G~l~~~~~f~vdf~~~~~g~~~~h~~r~~~gd~~sd~~~ 222 (222)
+|||||+++++.+|+++|||+++|+|++|++|+|||++||+||+||||||||||||||||||
T Consensus 415 ~QFYPE~v~~G~~miqidvdt~~g~~~lN~~flvDf~~ep~gPsL~hemRypggdCtsdiwi 476 (476)
T KOG0918|consen 415 RQFYPELVSKGSHMIQIDVDTVKGGLSLNPDFLVDFGKEPDGPSLAHEMRYPGGDCTSDIWI 476 (476)
T ss_pred hhhCHHHHhcCceEEEEeeeccCCceeeCccceEEccCCCCCcchhhhcccCCCcccccccC
Confidence 99999999999999999999999999999999999999999999999999999999999997
No 2
>PF05694 SBP56: 56kDa selenium binding protein (SBP56); InterPro: IPR008826 This family consists of several eukaryotic selenium binding proteins as well as three sequences from archaea. The exact function of this protein is unknown although it is thought that SBP56 participates in late stages of intra-Golgi protein transport []. The Lotus japonicus homologue of SBP56, LjSBP is thought to have more than one physiological role and can be implicated in controlling the oxidation/reduction status of target proteins in vesicular Golgi transport [].; GO: 0008430 selenium binding; PDB: 2ECE_A.
Probab=100.00 E-value=2.3e-76 Score=555.01 Aligned_cols=207 Identities=67% Similarity=1.232 Sum_probs=141.0
Q ss_pred CeEeEEEcCCCCeEEEEeccCceEEEEEeCCCCCeeEEEEEEecCcccccccCCCC-------CCceeEEEEcCCCCEEE
Q 027522 1 MQIRFLHDPSKDIGFVGCALASTMVRFSKTQDGSWNHEVAISVKSLKVQNWILPEM-------PGLITDFLISLDDRFLY 73 (222)
Q Consensus 1 levr~afhP~g~~aYvv~ELsstV~~~~~d~~g~~~~~q~is~~p~~~~g~~~~~~-------~~~~adI~iSpDgrfLY 73 (222)
|||||+|+|+..++||.|+|+|+|++|+++++|+|++++||+++++++++|.+|+| |++++||.||+|+||||
T Consensus 248 LEvRflH~P~~~~gFvg~aLss~i~~~~k~~~g~W~a~kVi~ip~~~v~~~~lp~ml~~~~~~P~LitDI~iSlDDrfLY 327 (461)
T PF05694_consen 248 LEVRFLHDPDANYGFVGCALSSSIWRFYKDDDGEWAAEKVIDIPAKKVEGWILPEMLKPFGAVPPLITDILISLDDRFLY 327 (461)
T ss_dssp EEEEE-SSTT--EEEEEEE--EEEEEEEE-ETTEEEEEEEEEE--EE--SS---GGGGGG-EE------EEE-TTS-EEE
T ss_pred EEEEecCCCCccceEEEEeccceEEEEEEcCCCCeeeeEEEECCCcccCcccccccccccccCCCceEeEEEccCCCEEE
Confidence 79999999999999999999999999999878999999999999999999999999 99999999999999999
Q ss_pred EEeCCCCcEEEEEecCCCCCeEEEEEEecceeecCCceeeeeCCCCCCCCCCccccCcccCCCCeeEEECCCCCEEEEEe
Q 027522 74 FSNWLHGDIRQYNIEDPKNPVLTGQIWVGGLFRKGSPVVAVTDDGQPYQSDVPEVQGHRLRGGPQMIQLSLDGKRLYVTN 153 (222)
Q Consensus 74 vSnRgh~sI~vf~i~d~~~~~L~~~v~~gG~~~~~~~~~~~~~~~~~~~p~~~~v~G~~~~ggPr~~~lspdGk~LyvaN 153 (222)
||||+||+|+||||+||.+|||+++|++||++.++ +.+.++|++++|||||++||+|||||||||
T Consensus 328 vs~W~~GdvrqYDISDP~~Pkl~gqv~lGG~~~~~---------------~~~~v~g~~l~GgPqMvqlS~DGkRlYvTn 392 (461)
T PF05694_consen 328 VSNWLHGDVRQYDISDPFNPKLVGQVFLGGSIRKG---------------DHPVVKGKRLRGGPQMVQLSLDGKRLYVTN 392 (461)
T ss_dssp EEETTTTEEEEEE-SSTTS-EEEEEEE-BTTTT-B-----------------TTS------S----EEE-TTSSEEEEE-
T ss_pred EEcccCCcEEEEecCCCCCCcEEeEEEECcEeccC---------------CCccccccccCCCCCeEEEccCCeEEEEEe
Confidence 99999999999999999999999999999998653 235578999999999999999999999999
Q ss_pred CCCCccccccccccccCCcEEEEEEeeCCCCCeeeccceeEecCCCCCCCcceeeeecCCCCcCccccC
Q 027522 154 SLFSAWDCQFYPELKEKGSHMLQIDVNSEKGGMAINPNFFVDFEAEPDGPALAHEMRYPGGDCTSDIWI 222 (222)
Q Consensus 154 sl~~~wd~Q~yp~~~s~~~~i~~~dvd~~~G~l~~~~~f~vdf~~~~~g~~~~h~~r~~~gd~~sd~~~ 222 (222)
||||+||+||||++++++.+|+++|+|+++|+|+++++|+|||++||+||+|||||||||||||||||+
T Consensus 393 SLys~WD~qfYP~~~~~g~~m~~iDvd~~~Ggl~l~~~F~VDFg~ep~Gp~raHe~R~pgGDctSDi~~ 461 (461)
T PF05694_consen 393 SLYSAWDKQFYPDGVKNGSWMLKIDVDTENGGLTLDEDFLVDFGKEPDGPARAHEMRYPGGDCTSDIWC 461 (461)
T ss_dssp ---HHHHHHHSTT------EEEEEEE-TT-S-EEEEEEEEEE-TT-----SEEEEEEETT--TTT---S
T ss_pred ecccccccccCCCccccccEEEEEEecCCCCceeeCccceecccccccccccceeeecCCCCccccccC
Confidence 999999999999999999999999999999999999999999999999999999999999999999997
No 3
>COG2706 3-carboxymuconate cyclase [Carbohydrate transport and metabolism]
Probab=100.00 E-value=1.1e-33 Score=259.24 Aligned_cols=133 Identities=21% Similarity=0.307 Sum_probs=116.4
Q ss_pred EEEcCCCCeEEEEeccCceEEEEEeCC-CCCeeEEEEEEecCcccccccCCCCCCceeEEEEcCCCCEEEEEeCCCCcEE
Q 027522 5 FLHDPSKDIGFVGCALASTMVRFSKTQ-DGSWNHEVAISVKSLKVQNWILPEMPGLITDFLISLDDRFLYFSNWLHGDIR 83 (222)
Q Consensus 5 ~afhP~g~~aYvv~ELsstV~~~~~d~-~g~~~~~q~is~~p~~~~g~~~~~~~~~~adI~iSpDgrfLYvSnRgh~sI~ 83 (222)
++|||++++||++|||+|||.++.|+. .|+++..|+++++|++|+|. +.+|+|+||+||||||||||+|++|+
T Consensus 196 i~FHpn~k~aY~v~EL~stV~v~~y~~~~g~~~~lQ~i~tlP~dF~g~------~~~aaIhis~dGrFLYasNRg~dsI~ 269 (346)
T COG2706 196 IVFHPNGKYAYLVNELNSTVDVLEYNPAVGKFEELQTIDTLPEDFTGT------NWAAAIHISPDGRFLYASNRGHDSIA 269 (346)
T ss_pred EEEcCCCcEEEEEeccCCEEEEEEEcCCCceEEEeeeeccCccccCCC------CceeEEEECCCCCEEEEecCCCCeEE
Confidence 799999999999999999999999974 58999999999999999987 78899999999999999999999999
Q ss_pred EEEecCCCCCeE--EEEEEecceeecCCceeeeeCCCCCCCCCCccccCcccCCCCeeEEECCCCCEEEEEeCCCCcccc
Q 027522 84 QYNIEDPKNPVL--TGQIWVGGLFRKGSPVVAVTDDGQPYQSDVPEVQGHRLRGGPQMIQLSLDGKRLYVTNSLFSAWDC 161 (222)
Q Consensus 84 vf~i~d~~~~~L--~~~v~~gG~~~~~~~~~~~~~~~~~~~p~~~~v~G~~~~ggPr~~~lspdGk~LyvaNsl~~~wd~ 161 (222)
+|.|+ +..++| ++.+++ .|.. ||+|.|+++|++|+|||
T Consensus 270 ~f~V~-~~~g~L~~~~~~~t---------------------------eg~~----PR~F~i~~~g~~Liaa~-------- 309 (346)
T COG2706 270 VFSVD-PDGGKLELVGITPT---------------------------EGQF----PRDFNINPSGRFLIAAN-------- 309 (346)
T ss_pred EEEEc-CCCCEEEEEEEecc---------------------------CCcC----CccceeCCCCCEEEEEc--------
Confidence 99995 455554 445544 3566 99999999999999999
Q ss_pred ccccccccCCcEEEEEEeeCCCCCeeecc
Q 027522 162 QFYPELKEKGSHMLQIDVNSEKGGMAINP 190 (222)
Q Consensus 162 Q~yp~~~s~~~~i~~~dvd~~~G~l~~~~ 190 (222)
|. ||+.++|+| |.+||.|++-.
T Consensus 310 q~-----sd~i~vf~~--d~~TG~L~~~~ 331 (346)
T COG2706 310 QK-----SDNITVFER--DKETGRLTLLG 331 (346)
T ss_pred cC-----CCcEEEEEE--cCCCceEEecc
Confidence 87 777777777 88999997443
No 4
>PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3.1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H.
Probab=99.96 E-value=4.8e-28 Score=219.07 Aligned_cols=134 Identities=25% Similarity=0.365 Sum_probs=110.3
Q ss_pred EEEcCCCCeEEEEeccCceEEEEEeC-CCCCeeEEEEEEecCcccccccCCCCCCceeEEEEcCCCCEEEEEeCCCCcEE
Q 027522 5 FLHDPSKDIGFVGCALASTMVRFSKT-QDGSWNHEVAISVKSLKVQNWILPEMPGLITDFLISLDDRFLYFSNWLHGDIR 83 (222)
Q Consensus 5 ~afhP~g~~aYvv~ELsstV~~~~~d-~~g~~~~~q~is~~p~~~~g~~~~~~~~~~adI~iSpDgrfLYvSnRgh~sI~ 83 (222)
++|||+++++||+|||+++|.+|.++ ++|+++..|.+++.|..+.+. +.+++|+|||||||||||||++++|+
T Consensus 197 ~~f~pdg~~~Yv~~e~s~~v~v~~~~~~~g~~~~~~~~~~~~~~~~~~------~~~~~i~ispdg~~lyvsnr~~~sI~ 270 (345)
T PF10282_consen 197 LAFSPDGKYAYVVNELSNTVSVFDYDPSDGSLTEIQTISTLPEGFTGE------NAPAEIAISPDGRFLYVSNRGSNSIS 270 (345)
T ss_dssp EEE-TTSSEEEEEETTTTEEEEEEEETTTTEEEEEEEEESCETTSCSS------SSEEEEEE-TTSSEEEEEECTTTEEE
T ss_pred EEEcCCcCEEEEecCCCCcEEEEeecccCCceeEEEEeeecccccccc------CCceeEEEecCCCEEEEEeccCCEEE
Confidence 79999999999999999999999997 678999999999888766654 57899999999999999999999999
Q ss_pred EEEecC-CCCCeEEEEEEecceeecCCceeeeeCCCCCCCCCCccccCcccCCCCeeEEECCCCCEEEEEeCCCCccccc
Q 027522 84 QYNIED-PKNPVLTGQIWVGGLFRKGSPVVAVTDDGQPYQSDVPEVQGHRLRGGPQMIQLSLDGKRLYVTNSLFSAWDCQ 162 (222)
Q Consensus 84 vf~i~d-~~~~~L~~~v~~gG~~~~~~~~~~~~~~~~~~~p~~~~v~G~~~~ggPr~~~lspdGk~LyvaNsl~~~wd~Q 162 (222)
+|+++. .+++++++.++++ |+. ||+|++||||++||||| |
T Consensus 271 vf~~d~~~g~l~~~~~~~~~---------------------------G~~----Pr~~~~s~~g~~l~Va~--------~ 311 (345)
T PF10282_consen 271 VFDLDPATGTLTLVQTVPTG---------------------------GKF----PRHFAFSPDGRYLYVAN--------Q 311 (345)
T ss_dssp EEEECTTTTTEEEEEEEEES---------------------------SSS----EEEEEE-TTSSEEEEEE--------T
T ss_pred EEEEecCCCceEEEEEEeCC---------------------------CCC----ccEEEEeCCCCEEEEEe--------c
Confidence 999943 3455666777764 555 99999999999999999 7
Q ss_pred cccccccCCcEEEEEEeeCCCCCeeecc
Q 027522 163 FYPELKEKGSHMLQIDVNSEKGGMAINP 190 (222)
Q Consensus 163 ~yp~~~s~~~~i~~~dvd~~~G~l~~~~ 190 (222)
. ++++.+| ++|+++|.|+...
T Consensus 312 ~-----s~~v~vf--~~d~~tG~l~~~~ 332 (345)
T PF10282_consen 312 D-----SNTVSVF--DIDPDTGKLTPVG 332 (345)
T ss_dssp T-----TTEEEEE--EEETTTTEEEEEE
T ss_pred C-----CCeEEEE--EEeCCCCcEEEec
Confidence 6 5555555 5588999997544
No 5
>PRK11028 6-phosphogluconolactonase; Provisional
Probab=99.88 E-value=1.9e-21 Score=172.24 Aligned_cols=143 Identities=15% Similarity=0.223 Sum_probs=110.2
Q ss_pred eEEEcCCCCeEEEEeccCceEEEEEeCC-CCCeeEEEEEEecCcccccccCCCCCCceeEEEEcCCCCEEEEEeCCCCcE
Q 027522 4 RFLHDPSKDIGFVGCALASTMVRFSKTQ-DGSWNHEVAISVKSLKVQNWILPEMPGLITDFLISLDDRFLYFSNWLHGDI 82 (222)
Q Consensus 4 r~afhP~g~~aYvv~ELsstV~~~~~d~-~g~~~~~q~is~~p~~~~g~~~~~~~~~~adI~iSpDgrfLYvSnRgh~sI 82 (222)
.++|||+|+++||+||++++|.+|..+. +|+++..+.+...|..+.+. ..+++|++|||||||||+||++++|
T Consensus 179 ~~~~~pdg~~lyv~~~~~~~v~v~~~~~~~~~~~~~~~~~~~p~~~~~~------~~~~~i~~~pdg~~lyv~~~~~~~I 252 (330)
T PRK11028 179 HMVFHPNQQYAYCVNELNSSVDVWQLKDPHGEIECVQTLDMMPADFSDT------RWAADIHITPDGRHLYACDRTASLI 252 (330)
T ss_pred eEEECCCCCEEEEEecCCCEEEEEEEeCCCCCEEEEEEEecCCCcCCCC------ccceeEEECCCCCEEEEecCCCCeE
Confidence 3799999999999999999999999863 57787777776655544332 4567999999999999999999999
Q ss_pred EEEEecCCC-CCeEEEEEEecceeecCCceeeeeCCCCCCCCCCccccCcccCCCCeeEEECCCCCEEEEEeCCCCcccc
Q 027522 83 RQYNIEDPK-NPVLTGQIWVGGLFRKGSPVVAVTDDGQPYQSDVPEVQGHRLRGGPQMIQLSLDGKRLYVTNSLFSAWDC 161 (222)
Q Consensus 83 ~vf~i~d~~-~~~L~~~v~~gG~~~~~~~~~~~~~~~~~~~p~~~~v~G~~~~ggPr~~~lspdGk~LyvaNsl~~~wd~ 161 (222)
++|+++..+ ..++++.+.+ |.. ||.|+++|||++|||||
T Consensus 253 ~v~~i~~~~~~~~~~~~~~~----------------------------~~~----p~~~~~~~dg~~l~va~-------- 292 (330)
T PRK11028 253 SVFSVSEDGSVLSFEGHQPT----------------------------ETQ----PRGFNIDHSGKYLIAAG-------- 292 (330)
T ss_pred EEEEEeCCCCeEEEeEEEec----------------------------ccc----CCceEECCCCCEEEEEE--------
Confidence 999995432 3455666665 333 99999999999999999
Q ss_pred ccccccccCCcEEEEEEeeCCCCCeeeccceeEecCCCCC
Q 027522 162 QFYPELKEKGSHMLQIDVNSEKGGMAINPNFFVDFEAEPD 201 (222)
Q Consensus 162 Q~yp~~~s~~~~i~~~dvd~~~G~l~~~~~f~vdf~~~~~ 201 (222)
|. ++.+.++++ |.++|.|+....+.+ +..|.
T Consensus 293 ~~-----~~~v~v~~~--~~~~g~l~~~~~~~~--g~~P~ 323 (330)
T PRK11028 293 QK-----SHHISVYEI--DGETGLLTELGRYAV--GQGPM 323 (330)
T ss_pred cc-----CCcEEEEEE--cCCCCcEEEcccccc--CCCce
Confidence 65 444555544 778999987776665 44443
No 6
>PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3.1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H.
Probab=99.64 E-value=3.5e-14 Score=128.75 Aligned_cols=153 Identities=18% Similarity=0.280 Sum_probs=105.9
Q ss_pred EEEcCCCCeEEEEeccCceEEEEEeCC-CCCeeEEEEEEecCcccccccCCCCCCceeEEEEcCCCCEEEEEeCCCCcEE
Q 027522 5 FLHDPSKDIGFVGCALASTMVRFSKTQ-DGSWNHEVAISVKSLKVQNWILPEMPGLITDFLISLDDRFLYFSNWLHGDIR 83 (222)
Q Consensus 5 ~afhP~g~~aYvv~ELsstV~~~~~d~-~g~~~~~q~is~~p~~~~g~~~~~~~~~~adI~iSpDgrfLYvSnRgh~sI~ 83 (222)
..|+|+|+++||.+-=...|.+|..+. .++++....+.+++. +.+..|.+||||+++||.|-..++|.
T Consensus 149 v~~~pdg~~v~v~dlG~D~v~~~~~~~~~~~l~~~~~~~~~~G-----------~GPRh~~f~pdg~~~Yv~~e~s~~v~ 217 (345)
T PF10282_consen 149 VVFSPDGRFVYVPDLGADRVYVYDIDDDTGKLTPVDSIKVPPG-----------SGPRHLAFSPDGKYAYVVNELSNTVS 217 (345)
T ss_dssp EEE-TTSSEEEEEETTTTEEEEEEE-TTS-TEEEEEEEECSTT-----------SSEEEEEE-TTSSEEEEEETTTTEEE
T ss_pred EEECCCCCEEEEEecCCCEEEEEEEeCCCceEEEeeccccccC-----------CCCcEEEEcCCcCEEEEecCCCCcEE
Confidence 578999999999987778899999864 346777666665531 45799999999999999999999999
Q ss_pred EEEecC-CCCCeEEEEEEecceeecCCceeeeeCCCCCCCCCCccccCcccCCCCeeEEECCCCCEEEEEeCCCCccccc
Q 027522 84 QYNIED-PKNPVLTGQIWVGGLFRKGSPVVAVTDDGQPYQSDVPEVQGHRLRGGPQMIQLSLDGKRLYVTNSLFSAWDCQ 162 (222)
Q Consensus 84 vf~i~d-~~~~~L~~~v~~gG~~~~~~~~~~~~~~~~~~~p~~~~v~G~~~~ggPr~~~lspdGk~LyvaNsl~~~wd~Q 162 (222)
+|+++. .+..+.++.+.+.. . ...|.. .|..+++|||||+|||+| .
T Consensus 218 v~~~~~~~g~~~~~~~~~~~~--------------------~--~~~~~~---~~~~i~ispdg~~lyvsn--------r 264 (345)
T PF10282_consen 218 VFDYDPSDGSLTEIQTISTLP--------------------E--GFTGEN---APAEIAISPDGRFLYVSN--------R 264 (345)
T ss_dssp EEEEETTTTEEEEEEEEESCE--------------------T--TSCSSS---SEEEEEE-TTSSEEEEEE--------C
T ss_pred EEeecccCCceeEEEEeeecc--------------------c--cccccC---CceeEEEecCCCEEEEEe--------c
Confidence 999963 23334445555421 1 012321 399999999999999999 4
Q ss_pred cccccccCCcEEEEEEeeCCCCCeeeccceeEecCCCCCCCcceeeeec-CCCC
Q 027522 163 FYPELKEKGSHMLQIDVNSEKGGMAINPNFFVDFEAEPDGPALAHEMRY-PGGD 215 (222)
Q Consensus 163 ~yp~~~s~~~~i~~~dvd~~~G~l~~~~~f~vdf~~~~~g~~~~h~~r~-~~gd 215 (222)
..++|..+++|+.+|.|++-+.+.. + | ..|+.|.+ |.|+
T Consensus 265 -------~~~sI~vf~~d~~~g~l~~~~~~~~--~----G-~~Pr~~~~s~~g~ 304 (345)
T PF10282_consen 265 -------GSNSISVFDLDPATGTLTLVQTVPT--G----G-KFPRHFAFSPDGR 304 (345)
T ss_dssp -------TTTEEEEEEECTTTTTEEEEEEEEE--S----S-SSEEEEEE-TTSS
T ss_pred -------cCCEEEEEEEecCCCceEEEEEEeC--C----C-CCccEEEEeCCCC
Confidence 3556666677889999986555443 1 1 24666766 4443
No 7
>PRK11028 6-phosphogluconolactonase; Provisional
Probab=99.64 E-value=1.6e-14 Score=128.11 Aligned_cols=138 Identities=14% Similarity=0.213 Sum_probs=94.8
Q ss_pred EEEcCCCCeEEEEeccCceEEEEEeCCCCCeeEE--EEEEecCcccccccCCCCCCceeEEEEcCCCCEEEEEeCCCCcE
Q 027522 5 FLHDPSKDIGFVGCALASTMVRFSKTQDGSWNHE--VAISVKSLKVQNWILPEMPGLITDFLISLDDRFLYFSNWLHGDI 82 (222)
Q Consensus 5 ~afhP~g~~aYvv~ELsstV~~~~~d~~g~~~~~--q~is~~p~~~~g~~~~~~~~~~adI~iSpDgrfLYvSnRgh~sI 82 (222)
.+++|+|+++||.+..+.+|.+|..+.+|.+... ..+.+++ | ..+..|.+||||++|||+|.+.++|
T Consensus 131 ~~~~p~g~~l~v~~~~~~~v~v~d~~~~g~l~~~~~~~~~~~~----g-------~~p~~~~~~pdg~~lyv~~~~~~~v 199 (330)
T PRK11028 131 ANIDPDNRTLWVPCLKEDRIRLFTLSDDGHLVAQEPAEVTTVE----G-------AGPRHMVFHPNQQYAYCVNELNSSV 199 (330)
T ss_pred eEeCCCCCEEEEeeCCCCEEEEEEECCCCcccccCCCceecCC----C-------CCCceEEECCCCCEEEEEecCCCEE
Confidence 4689999999999999999999998755655422 1223322 1 2357899999999999999999999
Q ss_pred EEEEecCC-CCCeEEEEEEecceeecCCceeeeeCCCCCCCCCCccccCcccCCCCeeEEECCCCCEEEEEeCCCCcccc
Q 027522 83 RQYNIEDP-KNPVLTGQIWVGGLFRKGSPVVAVTDDGQPYQSDVPEVQGHRLRGGPQMIQLSLDGKRLYVTNSLFSAWDC 161 (222)
Q Consensus 83 ~vf~i~d~-~~~~L~~~v~~gG~~~~~~~~~~~~~~~~~~~p~~~~v~G~~~~ggPr~~~lspdGk~LyvaNsl~~~wd~ 161 (222)
.+|+++.. +..+++..+... |... .++++ |..+.++|||++|||+|
T Consensus 200 ~v~~~~~~~~~~~~~~~~~~~--------------------p~~~-~~~~~----~~~i~~~pdg~~lyv~~-------- 246 (330)
T PRK11028 200 DVWQLKDPHGEIECVQTLDMM--------------------PADF-SDTRW----AADIHITPDGRHLYACD-------- 246 (330)
T ss_pred EEEEEeCCCCCEEEEEEEecC--------------------CCcC-CCCcc----ceeEEECCCCCEEEEec--------
Confidence 99999642 233444444321 1100 01233 77899999999999999
Q ss_pred ccccccccCCcEEEEEEeeCCCCCeeecccee
Q 027522 162 QFYPELKEKGSHMLQIDVNSEKGGMAINPNFF 193 (222)
Q Consensus 162 Q~yp~~~s~~~~i~~~dvd~~~G~l~~~~~f~ 193 (222)
+. ..+|..++++.+++.+++...+.
T Consensus 247 ~~-------~~~I~v~~i~~~~~~~~~~~~~~ 271 (330)
T PRK11028 247 RT-------ASLISVFSVSEDGSVLSFEGHQP 271 (330)
T ss_pred CC-------CCeEEEEEEeCCCCeEEEeEEEe
Confidence 43 34444456676767776655544
No 8
>COG2706 3-carboxymuconate cyclase [Carbohydrate transport and metabolism]
Probab=99.32 E-value=2.1e-10 Score=106.34 Aligned_cols=165 Identities=16% Similarity=0.217 Sum_probs=110.0
Q ss_pred EEEcCCCCeEEEEecc--CceEEEEEeCC-CCCeeEEEEEEecCcccccccCCCCCCceeEEEEcCCCCEEEEEeCCCCc
Q 027522 5 FLHDPSKDIGFVGCAL--ASTMVRFSKTQ-DGSWNHEVAISVKSLKVQNWILPEMPGLITDFLISLDDRFLYFSNWLHGD 81 (222)
Q Consensus 5 ~afhP~g~~aYvv~EL--sstV~~~~~d~-~g~~~~~q~is~~p~~~~g~~~~~~~~~~adI~iSpDgrfLYvSnRgh~s 81 (222)
++++|+++++|+++|- ...|..|+.|. +|+++.+-...++- +.++-|.+|+||||||++|-..++
T Consensus 45 l~~~~~~~~LY~v~~~~~~ggvaay~iD~~~G~Lt~ln~~~~~g------------~~p~yvsvd~~g~~vf~AnY~~g~ 112 (346)
T COG2706 45 LAVNPDQRHLYVVNEPGEEGGVAAYRIDPDDGRLTFLNRQTLPG------------SPPCYVSVDEDGRFVFVANYHSGS 112 (346)
T ss_pred EEECCCCCEEEEEEecCCcCcEEEEEEcCCCCeEEEeeccccCC------------CCCeEEEECCCCCEEEEEEccCce
Confidence 6899999999999999 67799999984 59998776655431 234899999999999999999999
Q ss_pred EEEEEecCCCCCeEE-EEEEecceeec---------------CC-ceeeee---C-------CCCCCCCC-C-ccccCcc
Q 027522 82 IRQYNIEDPKNPVLT-GQIWVGGLFRK---------------GS-PVVAVT---D-------DGQPYQSD-V-PEVQGHR 132 (222)
Q Consensus 82 I~vf~i~d~~~~~L~-~~v~~gG~~~~---------------~~-~~~~~~---~-------~~~~~~p~-~-~~v~G~~ 132 (222)
|++|.+.+.+.+..+ +.+.--|..+. +. -|.++. | +|-+-.|. . ....|
T Consensus 113 v~v~p~~~dG~l~~~v~~~~h~g~~p~~rQ~~~h~H~a~~tP~~~~l~v~DLG~Dri~~y~~~dg~L~~~~~~~v~~G-- 190 (346)
T COG2706 113 VSVYPLQADGSLQPVVQVVKHTGSGPHERQESPHVHSANFTPDGRYLVVPDLGTDRIFLYDLDDGKLTPADPAEVKPG-- 190 (346)
T ss_pred EEEEEcccCCccccceeeeecCCCCCCccccCCccceeeeCCCCCEEEEeecCCceEEEEEcccCccccccccccCCC--
Confidence 999999654444332 43333222010 01 111110 0 22223331 1 22223
Q ss_pred cCCCCeeEEECCCCCEEEEEeCCCCccccccccccccCCcEEEEEEeeCCCCCeeecccee---EecCCCC
Q 027522 133 LRGGPQMIQLSLDGKRLYVTNSLFSAWDCQFYPELKEKGSHMLQIDVNSEKGGMAINPNFF---VDFEAEP 200 (222)
Q Consensus 133 ~~ggPr~~~lspdGk~LyvaNsl~~~wd~Q~yp~~~s~~~~i~~~dvd~~~G~l~~~~~f~---vdf~~~~ 200 (222)
.|||+|.+.|+||+.|+.| +- +.+|.....|+..|+++.-+... -||.+..
T Consensus 191 --~GPRHi~FHpn~k~aY~v~--------EL-------~stV~v~~y~~~~g~~~~lQ~i~tlP~dF~g~~ 244 (346)
T COG2706 191 --AGPRHIVFHPNGKYAYLVN--------EL-------NSTVDVLEYNPAVGKFEELQTIDTLPEDFTGTN 244 (346)
T ss_pred --CCcceEEEcCCCcEEEEEe--------cc-------CCEEEEEEEcCCCceEEEeeeeccCccccCCCC
Confidence 3699999999999999999 54 66666666687888885333222 2776543
No 9
>TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain. This family consists of the heavy chain of methylamine dehydrogenase light chain, a periplasmic enzyme. The enzyme contains a tryptophan tryptophylquinone (TTQ) prothetic group derived from two Trp residues in the light subunity. The enzyme forms a complex with the type I blue copper protein amicyanin and a cytochrome. Electron transfer procedes from TQQ to the copper and then to the heme group of the cytochrome.
Probab=99.26 E-value=1.2e-10 Score=108.29 Aligned_cols=100 Identities=12% Similarity=0.015 Sum_probs=75.2
Q ss_pred CCCeEEEEecc----CceEEEEEeCCCCCeeEEEEEEecCcccccccCCCCCCceeEEEEcCCCCEEEEEeC--------
Q 027522 10 SKDIGFVGCAL----ASTMVRFSKTQDGSWNHEVAISVKSLKVQNWILPEMPGLITDFLISLDDRFLYFSNW-------- 77 (222)
Q Consensus 10 ~g~~aYvv~EL----sstV~~~~~d~~g~~~~~q~is~~p~~~~g~~~~~~~~~~adI~iSpDgrfLYvSnR-------- 77 (222)
+++++||.++- .++|+++.-+ +++.+..|++.. .+..+ +|||||+|||+|-
T Consensus 11 ~~~~v~V~d~~~~~~~~~v~ViD~~---~~~v~g~i~~G~-------------~P~~~-~spDg~~lyva~~~~~R~~~G 73 (352)
T TIGR02658 11 DARRVYVLDPGHFAATTQVYTIDGE---AGRVLGMTDGGF-------------LPNPV-VASDGSFFAHASTVYSRIARG 73 (352)
T ss_pred CCCEEEEECCcccccCceEEEEECC---CCEEEEEEEccC-------------CCcee-ECCCCCEEEEEeccccccccC
Confidence 78999999996 5999999753 345555555431 22345 9999999999998
Q ss_pred -CCCcEEEEEecCCCCCeEEEEEEecceeecCCceeeeeCCCCCCCCCCccccCcccCCCCeeEEECCCCCEEEEEe
Q 027522 78 -LHGDIRQYNIEDPKNPVLTGQIWVGGLFRKGSPVVAVTDDGQPYQSDVPEVQGHRLRGGPQMIQLSLDGKRLYVTN 153 (222)
Q Consensus 78 -gh~sI~vf~i~d~~~~~L~~~v~~gG~~~~~~~~~~~~~~~~~~~p~~~~v~G~~~~ggPr~~~lspdGk~LyvaN 153 (222)
..+.|.+||+. +++.++++.+++. |..+ -|.. |.+|+||||||+|||+|
T Consensus 74 ~~~d~V~v~D~~---t~~~~~~i~~p~~------------------p~~~--~~~~----~~~~~ls~dgk~l~V~n 123 (352)
T TIGR02658 74 KRTDYVEVIDPQ---THLPIADIELPEG------------------PRFL--VGTY----PWMTSLTPDNKTLLFYQ 123 (352)
T ss_pred CCCCEEEEEECc---cCcEEeEEccCCC------------------chhh--ccCc----cceEEECCCCCEEEEec
Confidence 88999999773 5888888888532 1100 1444 77999999999999999
No 10
>PF02239 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO_B 1HZU_A 1N15_B 1N50_A 1GJQ_A 1BL9_B 1NIR_B 1N90_B 1HZV_A 1AOQ_A ....
Probab=99.20 E-value=9.3e-10 Score=102.23 Aligned_cols=151 Identities=18% Similarity=0.260 Sum_probs=89.0
Q ss_pred eEEEcCCCCeEEEEeccCceEEEEEeCCCCCeeEEEEEEecCcccccccCCCCCCceeEEEEcCCCCEEEEEeCCCCcEE
Q 027522 4 RFLHDPSKDIGFVGCALASTMVRFSKTQDGSWNHEVAISVKSLKVQNWILPEMPGLITDFLISLDDRFLYFSNWLHGDIR 83 (222)
Q Consensus 4 r~afhP~g~~aYvv~ELsstV~~~~~d~~g~~~~~q~is~~p~~~~g~~~~~~~~~~adI~iSpDgrfLYvSnRgh~sI~ 83 (222)
-++|+|||+++||.+- +++|.++... + .+..+.+.+. ..+..|.+|+|||+|||+|+..+++.
T Consensus 41 ~~~~s~Dgr~~yv~~r-dg~vsviD~~-~--~~~v~~i~~G-------------~~~~~i~~s~DG~~~~v~n~~~~~v~ 103 (369)
T PF02239_consen 41 GLKFSPDGRYLYVANR-DGTVSVIDLA-T--GKVVATIKVG-------------GNPRGIAVSPDGKYVYVANYEPGTVS 103 (369)
T ss_dssp EEE-TT-SSEEEEEET-TSEEEEEETT-S--SSEEEEEE-S-------------SEEEEEEE--TTTEEEEEEEETTEEE
T ss_pred EEEecCCCCEEEEEcC-CCeEEEEECC-c--ccEEEEEecC-------------CCcceEEEcCCCCEEEEEecCCCcee
Confidence 3579999999999985 7899999763 2 2344555432 33578999999999999999999999
Q ss_pred EEEecCCCCCeEEEEEEecceee------------c-CCc-----------eeeeeCCCCCCCCC-CccccCcccCCCCe
Q 027522 84 QYNIEDPKNPVLTGQIWVGGLFR------------K-GSP-----------VVAVTDDGQPYQSD-VPEVQGHRLRGGPQ 138 (222)
Q Consensus 84 vf~i~d~~~~~L~~~v~~gG~~~------------~-~~~-----------~~~~~~~~~~~~p~-~~~v~G~~~~ggPr 138 (222)
++|. .+.+++.+|++++.-. + ..+ |-++. +.....+. ...--|+. |.
T Consensus 104 v~D~---~tle~v~~I~~~~~~~~~~~~Rv~aIv~s~~~~~fVv~lkd~~~I~vVd-y~d~~~~~~~~i~~g~~----~~ 175 (369)
T PF02239_consen 104 VIDA---ETLEPVKTIPTGGMPVDGPESRVAAIVASPGRPEFVVNLKDTGEIWVVD-YSDPKNLKVTTIKVGRF----PH 175 (369)
T ss_dssp EEET---TT--EEEEEE--EE-TTTS---EEEEEE-SSSSEEEEEETTTTEEEEEE-TTTSSCEEEEEEE--TT----EE
T ss_pred Eecc---ccccceeecccccccccccCCCceeEEecCCCCEEEEEEccCCeEEEEE-eccccccceeeeccccc----cc
Confidence 9975 3578888888865321 1 111 11111 11111111 11113555 99
Q ss_pred eEEECCCCCEEEEEeCCCCccccccccccccCCcEEEEEEeeCCCCCeeeccceeEecCCCC
Q 027522 139 MIQLSLDGKRLYVTNSLFSAWDCQFYPELKEKGSHMLQIDVNSEKGGMAINPNFFVDFEAEP 200 (222)
Q Consensus 139 ~~~lspdGk~LyvaNsl~~~wd~Q~yp~~~s~~~~i~~~dvd~~~G~l~~~~~f~vdf~~~~ 200 (222)
++.++||||++++|+ +. ...|..+ |..++++. ..+|.++.|
T Consensus 176 D~~~dpdgry~~va~--------~~-------sn~i~vi--D~~~~k~v----~~i~~g~~p 216 (369)
T PF02239_consen 176 DGGFDPDGRYFLVAA--------NG-------SNKIAVI--DTKTGKLV----ALIDTGKKP 216 (369)
T ss_dssp EEEE-TTSSEEEEEE--------GG-------GTEEEEE--ETTTTEEE----EEEE-SSSB
T ss_pred ccccCcccceeeecc--------cc-------cceeEEE--eeccceEE----EEeeccccc
Confidence 999999999999987 32 3366666 45777764 246776633
No 11
>PF02239 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO_B 1HZU_A 1N15_B 1N50_A 1GJQ_A 1BL9_B 1NIR_B 1N90_B 1HZV_A 1AOQ_A ....
Probab=99.16 E-value=5.6e-10 Score=103.67 Aligned_cols=92 Identities=23% Similarity=0.319 Sum_probs=66.8
Q ss_pred CCeEEEEeccCceEEEEEeCCCCCeeEEEEEEecCcccccccCCCCCCceeEEEEcCCCCEEEEEeCCCCcEEEEEecCC
Q 027522 11 KDIGFVGCALASTMVRFSKTQDGSWNHEVAISVKSLKVQNWILPEMPGLITDFLISLDDRFLYFSNWLHGDIRQYNIEDP 90 (222)
Q Consensus 11 g~~aYvv~ELsstV~~~~~d~~g~~~~~q~is~~p~~~~g~~~~~~~~~~adI~iSpDgrfLYvSnRgh~sI~vf~i~d~ 90 (222)
++.+||++.-+++|.++..+ +.+....|.+.- +..+.+.+|||||+|||+|| .+.|.++|+.
T Consensus 5 ~~l~~V~~~~~~~v~viD~~---t~~~~~~i~~~~------------~~h~~~~~s~Dgr~~yv~~r-dg~vsviD~~-- 66 (369)
T PF02239_consen 5 GNLFYVVERGSGSVAVIDGA---TNKVVARIPTGG------------APHAGLKFSPDGRYLYVANR-DGTVSVIDLA-- 66 (369)
T ss_dssp GGEEEEEEGGGTEEEEEETT---T-SEEEEEE-ST------------TEEEEEE-TT-SSEEEEEET-TSEEEEEETT--
T ss_pred ccEEEEEecCCCEEEEEECC---CCeEEEEEcCCC------------CceeEEEecCCCCEEEEEcC-CCeEEEEECC--
Confidence 46788888889999999753 344455555431 22467789999999999998 5899999774
Q ss_pred CCCeEEEEEEecceeecCCceeeeeCCCCCCCCCCccccCcccCCCCeeEEECCCCCEEEEEe
Q 027522 91 KNPVLTGQIWVGGLFRKGSPVVAVTDDGQPYQSDVPEVQGHRLRGGPQMIQLSLDGKRLYVTN 153 (222)
Q Consensus 91 ~~~~L~~~v~~gG~~~~~~~~~~~~~~~~~~~p~~~~v~G~~~~ggPr~~~lspdGk~LyvaN 153 (222)
+.+++.+|.+| .. |+.+++|+|||+|||+|
T Consensus 67 -~~~~v~~i~~G----------------------------~~----~~~i~~s~DG~~~~v~n 96 (369)
T PF02239_consen 67 -TGKVVATIKVG----------------------------GN----PRGIAVSPDGKYVYVAN 96 (369)
T ss_dssp -SSSEEEEEE-S----------------------------SE----EEEEEE--TTTEEEEEE
T ss_pred -cccEEEEEecC----------------------------CC----cceEEEcCCCCEEEEEe
Confidence 47788999884 44 99999999999999999
No 12
>TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein. Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol.
Probab=99.12 E-value=6.1e-09 Score=87.47 Aligned_cols=134 Identities=13% Similarity=0.065 Sum_probs=90.8
Q ss_pred EEEcCCCCeEEEEeccCceEEEEEeCCCCCeeEEEEEEecCcccccccCCCCCCceeEEEEcCCCCEEEEEeCCCCcEEE
Q 027522 5 FLHDPSKDIGFVGCALASTMVRFSKTQDGSWNHEVAISVKSLKVQNWILPEMPGLITDFLISLDDRFLYFSNWLHGDIRQ 84 (222)
Q Consensus 5 ~afhP~g~~aYvv~ELsstV~~~~~d~~g~~~~~q~is~~p~~~~g~~~~~~~~~~adI~iSpDgrfLYvSnRgh~sI~v 84 (222)
++|+|+++++|+.++.+++|.+|... ++ +..+.++........ ....+..|.+||||+++|++....+.|.+
T Consensus 162 ~~~s~dg~~l~~~~~~~~~v~i~d~~-~~--~~~~~~~~~~~~~~~-----~~~~~~~i~~s~dg~~~~~~~~~~~~i~v 233 (300)
T TIGR03866 162 AEFTADGKELWVSSEIGGTVSVIDVA-TR--KVIKKITFEIPGVHP-----EAVQPVGIKLTKDGKTAFVALGPANRVAV 233 (300)
T ss_pred EEECCCCCEEEEEcCCCCEEEEEEcC-cc--eeeeeeeeccccccc-----ccCCccceEECCCCCEEEEEcCCCCeEEE
Confidence 67999999999999989999998764 33 223333322111110 01234689999999999999988889999
Q ss_pred EEecCCCCCeEEEEEEecceeecCCceeeeeCCCCCCCCCCccccCcccCCCCeeEEECCCCCEEEEEeCCCCccccccc
Q 027522 85 YNIEDPKNPVLTGQIWVGGLFRKGSPVVAVTDDGQPYQSDVPEVQGHRLRGGPQMIQLSLDGKRLYVTNSLFSAWDCQFY 164 (222)
Q Consensus 85 f~i~d~~~~~L~~~v~~gG~~~~~~~~~~~~~~~~~~~p~~~~v~G~~~~ggPr~~~lspdGk~LyvaNsl~~~wd~Q~y 164 (222)
|++. +.+++..+.. |.. |..+.++|||++||++| +
T Consensus 234 ~d~~---~~~~~~~~~~----------------------------~~~----~~~~~~~~~g~~l~~~~--------~-- 268 (300)
T TIGR03866 234 VDAK---TYEVLDYLLV----------------------------GQR----VWQLAFTPDEKYLLTTN--------G-- 268 (300)
T ss_pred EECC---CCcEEEEEEe----------------------------CCC----cceEEECCCCCEEEEEc--------C--
Confidence 9874 2555444433 223 88999999999999998 3
Q ss_pred cccccCCcEEEEEEeeCCCCCeeeccceeEecCCCCCC
Q 027522 165 PELKEKGSHMLQIDVNSEKGGMAINPNFFVDFEAEPDG 202 (222)
Q Consensus 165 p~~~s~~~~i~~~dvd~~~G~l~~~~~f~vdf~~~~~g 202 (222)
.+..|..+|. ++|+. -..+. ++++|+|
T Consensus 269 -----~~~~i~v~d~--~~~~~--~~~~~--~~~~~~~ 295 (300)
T TIGR03866 269 -----VSNDVSVIDV--AALKV--IKSIK--VGRLPWG 295 (300)
T ss_pred -----CCCeEEEEEC--CCCcE--EEEEE--cccccce
Confidence 3556777755 66654 22333 4677777
No 13
>TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain. This family consists of the heavy chain of methylamine dehydrogenase light chain, a periplasmic enzyme. The enzyme contains a tryptophan tryptophylquinone (TTQ) prothetic group derived from two Trp residues in the light subunity. The enzyme forms a complex with the type I blue copper protein amicyanin and a cytochrome. Electron transfer procedes from TQQ to the copper and then to the heme group of the cytochrome.
Probab=98.96 E-value=2.2e-08 Score=93.37 Aligned_cols=122 Identities=16% Similarity=0.157 Sum_probs=84.0
Q ss_pred EEcC-CCCeEEEEeccCceEEEEEeCCCCCeeEEEEEEecCcc--cccccCCCCCCceeEEEEcCCCCEEEEEe------
Q 027522 6 LHDP-SKDIGFVGCALASTMVRFSKTQDGSWNHEVAISVKSLK--VQNWILPEMPGLITDFLISLDDRFLYFSN------ 76 (222)
Q Consensus 6 afhP-~g~~aYvv~ELsstV~~~~~d~~g~~~~~q~is~~p~~--~~g~~~~~~~~~~adI~iSpDgrfLYvSn------ 76 (222)
.|.| +|+++||-+| ++|+++....++ -...+.+.+.... -++|. |...--|.+++||+.|||.+
T Consensus 200 ~~~~~dg~~~~vs~e--G~V~~id~~~~~-~~~~~~~~~~~~~~~~~~wr----P~g~q~ia~~~dg~~lyV~~~~~~~~ 272 (352)
T TIGR02658 200 AYSNKSGRLVWPTYT--GKIFQIDLSSGD-AKFLPAIEAFTEAEKADGWR----PGGWQQVAYHRARDRIYLLADQRAKW 272 (352)
T ss_pred ceEcCCCcEEEEecC--CeEEEEecCCCc-ceecceeeeccccccccccC----CCcceeEEEcCCCCEEEEEecCCccc
Confidence 3455 9999999999 999999864332 2223444443221 12441 12222399999999999954
Q ss_pred ---CCCCcEEEEEecCCCCCeEEEEEEecceeecCCceeeeeCCCCCCCCCCccccCcccCCCCeeEEECCCCC-EEEEE
Q 027522 77 ---WLHGDIRQYNIEDPKNPVLTGQIWVGGLFRKGSPVVAVTDDGQPYQSDVPEVQGHRLRGGPQMIQLSLDGK-RLYVT 152 (222)
Q Consensus 77 ---Rgh~sI~vf~i~d~~~~~L~~~v~~gG~~~~~~~~~~~~~~~~~~~p~~~~v~G~~~~ggPr~~~lspdGk-~Lyva 152 (222)
.+.+.|+++|. .+.+.+.++.+ |+. |-.+++||||| +||++
T Consensus 273 thk~~~~~V~ViD~---~t~kvi~~i~v----------------------------G~~----~~~iavS~Dgkp~lyvt 317 (352)
T TIGR02658 273 THKTASRFLFVVDA---KTGKRLRKIEL----------------------------GHE----IDSINVSQDAKPLLYAL 317 (352)
T ss_pred cccCCCCEEEEEEC---CCCeEEEEEeC----------------------------CCc----eeeEEECCCCCeEEEEe
Confidence 22368999875 45888888887 445 88999999999 99999
Q ss_pred eCCCCccccccccccccCCcEEEEEEeeCCCCCe
Q 027522 153 NSLFSAWDCQFYPELKEKGSHMLQIDVNSEKGGM 186 (222)
Q Consensus 153 Nsl~~~wd~Q~yp~~~s~~~~i~~~dvd~~~G~l 186 (222)
| + .+..+..+| ..+++.
T Consensus 318 n--------~-------~s~~VsViD--~~t~k~ 334 (352)
T TIGR02658 318 S--------T-------GDKTLYIFD--AETGKE 334 (352)
T ss_pred C--------C-------CCCcEEEEE--CcCCeE
Confidence 9 4 355566674 577765
No 14
>PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species. These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A ....
Probab=98.86 E-value=1.3e-07 Score=81.07 Aligned_cols=105 Identities=22% Similarity=0.320 Sum_probs=80.4
Q ss_pred EEEcCCCCeEEEEeccCceEEEEEeCCCC-CeeEEEEEEecCcccccccCCCCCCceeEEEEcCCCCEEEEEeCCCCcEE
Q 027522 5 FLHDPSKDIGFVGCALASTMVRFSKTQDG-SWNHEVAISVKSLKVQNWILPEMPGLITDFLISLDDRFLYFSNWLHGDIR 83 (222)
Q Consensus 5 ~afhP~g~~aYvv~ELsstV~~~~~d~~g-~~~~~q~is~~p~~~~g~~~~~~~~~~adI~iSpDgrfLYvSnRgh~sI~ 83 (222)
++|+|+++.+||..-....|++|..+.++ .+...+++.-++... +.+-.|.+..+|+ |||++++.+.|.
T Consensus 139 i~~s~dg~~lyv~ds~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~---------g~pDG~~vD~~G~-l~va~~~~~~I~ 208 (246)
T PF08450_consen 139 IAFSPDGKTLYVADSFNGRIWRFDLDADGGELSNRRVFIDFPGGP---------GYPDGLAVDSDGN-LWVADWGGGRIV 208 (246)
T ss_dssp EEEETTSSEEEEEETTTTEEEEEEEETTTCCEEEEEEEEE-SSSS---------CEEEEEEEBTTS--EEEEEETTTEEE
T ss_pred eEECCcchheeecccccceeEEEeccccccceeeeeeEEEcCCCC---------cCCCcceEcCCCC-EEEEEcCCCEEE
Confidence 68999999999999999999999997544 477666553222211 3457899999996 899999999999
Q ss_pred EEEecCCCCCeEEEEEEecceeecCCceeeeeCCCCCCCCCCccccCcccCCCCeeEEE-CCCCCEEEEEeC
Q 027522 84 QYNIEDPKNPVLTGQIWVGGLFRKGSPVVAVTDDGQPYQSDVPEVQGHRLRGGPQMIQL-SLDGKRLYVTNS 154 (222)
Q Consensus 84 vf~i~d~~~~~L~~~v~~gG~~~~~~~~~~~~~~~~~~~p~~~~v~G~~~~ggPr~~~l-spdGk~LyvaNs 154 (222)
+|+- . ++++..|.+. +.+ |-++++ -+|++.||||.+
T Consensus 209 ~~~p---~-G~~~~~i~~p---------------------------~~~----~t~~~fgg~~~~~L~vTta 245 (246)
T PF08450_consen 209 VFDP---D-GKLLREIELP---------------------------VPR----PTNCAFGGPDGKTLYVTTA 245 (246)
T ss_dssp EEET---T-SCEEEEEE-S---------------------------SSS----EEEEEEESTTSSEEEEEEB
T ss_pred EECC---C-ccEEEEEcCC---------------------------CCC----EEEEEEECCCCCEEEEEeC
Confidence 9953 3 7788888773 233 889999 689999999974
No 15
>TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein. Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol.
Probab=98.78 E-value=9.9e-07 Score=74.05 Aligned_cols=99 Identities=15% Similarity=0.204 Sum_probs=69.2
Q ss_pred eEEEcCCCCeEEEEeccCceEEEEEeCCCCCeeEEEEEEecCcccccccCCCCCCceeEEEEcCCCCEEEEEeCCCCcEE
Q 027522 4 RFLHDPSKDIGFVGCALASTMVRFSKTQDGSWNHEVAISVKSLKVQNWILPEMPGLITDFLISLDDRFLYFSNWLHGDIR 83 (222)
Q Consensus 4 r~afhP~g~~aYvv~ELsstV~~~~~d~~g~~~~~q~is~~p~~~~g~~~~~~~~~~adI~iSpDgrfLYvSnRgh~sI~ 83 (222)
.++|+|+++.+|+.++.+++|.++.... + .....+.. . ..+..|.+||||++|+++......+.
T Consensus 77 ~~~~~~~g~~l~~~~~~~~~l~~~d~~~-~--~~~~~~~~---~----------~~~~~~~~~~dg~~l~~~~~~~~~~~ 140 (300)
T TIGR03866 77 LFALHPNGKILYIANEDDNLVTVIDIET-R--KVLAEIPV---G----------VEPEGMAVSPDGKIVVNTSETTNMAH 140 (300)
T ss_pred EEEECCCCCEEEEEcCCCCeEEEEECCC-C--eEEeEeeC---C----------CCcceEEECCCCCEEEEEecCCCeEE
Confidence 4689999999999999889999987642 2 11222211 1 12367999999999999887655666
Q ss_pred EEEecCCCCCeEEEEEEecceeecCCceeeeeCCCCCCCCCCccccCcccCCCCeeEEECCCCCEEEEEe
Q 027522 84 QYNIEDPKNPVLTGQIWVGGLFRKGSPVVAVTDDGQPYQSDVPEVQGHRLRGGPQMIQLSLDGKRLYVTN 153 (222)
Q Consensus 84 vf~i~d~~~~~L~~~v~~gG~~~~~~~~~~~~~~~~~~~p~~~~v~G~~~~ggPr~~~lspdGk~LyvaN 153 (222)
.|+.. +.+++..+.. +.. |+.++++|||++|++++
T Consensus 141 ~~d~~---~~~~~~~~~~----------------------------~~~----~~~~~~s~dg~~l~~~~ 175 (300)
T TIGR03866 141 FIDTK---TYEIVDNVLV----------------------------DQR----PRFAEFTADGKELWVSS 175 (300)
T ss_pred EEeCC---CCeEEEEEEc----------------------------CCC----ccEEEECCCCCEEEEEc
Confidence 67653 3444333322 223 88999999999999887
No 16
>PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species. These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A ....
Probab=98.62 E-value=1.3e-06 Score=74.85 Aligned_cols=132 Identities=20% Similarity=0.268 Sum_probs=76.7
Q ss_pred EEEcCCCCeEEEEeccCceEEEEEeCCCCCeeEEEEEEecCcccccccCCCCCCceeEEEEcCCCCEEEEEeCCCCc---
Q 027522 5 FLHDPSKDIGFVGCALASTMVRFSKTQDGSWNHEVAISVKSLKVQNWILPEMPGLITDFLISLDDRFLYFSNWLHGD--- 81 (222)
Q Consensus 5 ~afhP~g~~aYvv~ELsstV~~~~~d~~g~~~~~q~is~~p~~~~g~~~~~~~~~~adI~iSpDgrfLYvSnRgh~s--- 81 (222)
++++.....+|+.++.+ +.++.. ++|+++. .++.+.... . ...+-|+.+++||+ ||+++-+...
T Consensus 45 ~~~~~~~g~l~v~~~~~--~~~~d~-~~g~~~~--~~~~~~~~~-~------~~~~ND~~vd~~G~-ly~t~~~~~~~~~ 111 (246)
T PF08450_consen 45 MAFDRPDGRLYVADSGG--IAVVDP-DTGKVTV--LADLPDGGV-P------FNRPNDVAVDPDGN-LYVTDSGGGGASG 111 (246)
T ss_dssp EEEECTTSEEEEEETTC--EEEEET-TTTEEEE--EEEEETTCS-C------TEEEEEEEE-TTS--EEEEEECCBCTTC
T ss_pred EEEEccCCEEEEEEcCc--eEEEec-CCCcEEE--EeeccCCCc-c------cCCCceEEEcCCCC-EEEEecCCCcccc
Confidence 45663446667776533 333332 3454432 223221110 1 15578999999999 8888764422
Q ss_pred ---EEEEEecCCCCCeEEEEEEecceeecCCceeeeeCCCCCCCCCCccccCcccCCCCeeEEECCCCCEEEEEeCCCCc
Q 027522 82 ---IRQYNIEDPKNPVLTGQIWVGGLFRKGSPVVAVTDDGQPYQSDVPEVQGHRLRGGPQMIQLSLDGKRLYVTNSLFSA 158 (222)
Q Consensus 82 ---I~vf~i~d~~~~~L~~~v~~gG~~~~~~~~~~~~~~~~~~~p~~~~v~G~~~~ggPr~~~lspdGk~LyvaNsl~~~ 158 (222)
=++|.++. . ++. ..+..+ -. .|+-+++||||+.|||++
T Consensus 112 ~~~g~v~~~~~-~-~~~-~~~~~~---------------------------~~----~pNGi~~s~dg~~lyv~d----- 152 (246)
T PF08450_consen 112 IDPGSVYRIDP-D-GKV-TVVADG---------------------------LG----FPNGIAFSPDGKTLYVAD----- 152 (246)
T ss_dssp GGSEEEEEEET-T-SEE-EEEEEE---------------------------ES----SEEEEEEETTSSEEEEEE-----
T ss_pred ccccceEEECC-C-CeE-EEEecC---------------------------cc----cccceEECCcchheeecc-----
Confidence 24666643 3 332 112211 11 299999999999999999
Q ss_pred cccccccccccCCcEEEEEEeeCCCCCeeeccceeEecCCC
Q 027522 159 WDCQFYPELKEKGSHMLQIDVNSEKGGMAINPNFFVDFEAE 199 (222)
Q Consensus 159 wd~Q~yp~~~s~~~~i~~~dvd~~~G~l~~~~~f~vdf~~~ 199 (222)
+.+..|++++.|..++.+. +...++++...
T Consensus 153 ----------s~~~~i~~~~~~~~~~~~~-~~~~~~~~~~~ 182 (246)
T PF08450_consen 153 ----------SFNGRIWRFDLDADGGELS-NRRVFIDFPGG 182 (246)
T ss_dssp ----------TTTTEEEEEEEETTTCCEE-EEEEEEE-SSS
T ss_pred ----------cccceeEEEecccccccee-eeeeEEEcCCC
Confidence 5678899999987777664 33444777654
No 17
>COG3391 Uncharacterized conserved protein [Function unknown]
Probab=98.61 E-value=1.7e-06 Score=80.40 Aligned_cols=109 Identities=18% Similarity=0.167 Sum_probs=72.9
Q ss_pred eEEEcCCCCeEEEEeccCceEEEEEeCCCCCeeEEEEEEecCcccccccCCCCCCceeEEEEcCCCCEEEEEeCCCCcEE
Q 027522 4 RFLHDPSKDIGFVGCALASTMVRFSKTQDGSWNHEVAISVKSLKVQNWILPEMPGLITDFLISLDDRFLYFSNWLHGDIR 83 (222)
Q Consensus 4 r~afhP~g~~aYvv~ELsstV~~~~~d~~g~~~~~q~is~~p~~~~g~~~~~~~~~~adI~iSpDgrfLYvSnRgh~sI~ 83 (222)
-.++.|+|+.+||.++-+++|.++.-... ...+ ..+...+. ....++.|.++|||.++||.|..+.+-.
T Consensus 164 ~~a~~p~g~~vyv~~~~~~~v~vi~~~~~---~v~~--~~~~~~~~------~~~~P~~i~v~~~g~~~yV~~~~~~~~~ 232 (381)
T COG3391 164 GVAVDPDGNKVYVTNSDDNTVSVIDTSGN---SVVR--GSVGSLVG------VGTGPAGIAVDPDGNRVYVANDGSGSNN 232 (381)
T ss_pred eEEECCCCCeEEEEecCCCeEEEEeCCCc---ceec--cccccccc------cCCCCceEEECCCCCEEEEEeccCCCce
Confidence 46899999999999999999999974321 1111 11110111 1145699999999999999999885445
Q ss_pred EEEecCCCCCeEEEEEEecceeecCCceeeeeCCCCCCCCCCccccCcccCCCCeeEEECCCCCEEEEEeC
Q 027522 84 QYNIEDPKNPVLTGQIWVGGLFRKGSPVVAVTDDGQPYQSDVPEVQGHRLRGGPQMIQLSLDGKRLYVTNS 154 (222)
Q Consensus 84 vf~i~d~~~~~L~~~v~~gG~~~~~~~~~~~~~~~~~~~p~~~~v~G~~~~ggPr~~~lspdGk~LyvaNs 154 (222)
++.++ .....+.......+ ++ . |+...++|+|++.||+|+
T Consensus 233 v~~id-~~~~~v~~~~~~~~-------------------------~~-~----~~~v~~~p~g~~~yv~~~ 272 (381)
T COG3391 233 VLKID-TATGNVTATDLPVG-------------------------SG-A----PRGVAVDPAGKAAYVANS 272 (381)
T ss_pred EEEEe-CCCceEEEeccccc-------------------------cC-C----CCceeECCCCCEEEEEec
Confidence 55552 23344433311111 12 4 999999999999999994
No 18
>COG3391 Uncharacterized conserved protein [Function unknown]
Probab=98.60 E-value=1.8e-06 Score=80.19 Aligned_cols=122 Identities=20% Similarity=0.245 Sum_probs=83.9
Q ss_pred eEEEcCCCCeEEEEec--cCceEEEEEeCCCCCeeEEEEEEecCcccccccCCCCCCceeEEEEcCCCCEEEEEeCCCCc
Q 027522 4 RFLHDPSKDIGFVGCA--LASTMVRFSKTQDGSWNHEVAISVKSLKVQNWILPEMPGLITDFLISLDDRFLYFSNWLHGD 81 (222)
Q Consensus 4 r~afhP~g~~aYvv~E--LsstV~~~~~d~~g~~~~~q~is~~p~~~~g~~~~~~~~~~adI~iSpDgrfLYvSnRgh~s 81 (222)
-++++|+++.+||.+. .+++|.++.... + +..+.+.. | ..+..+.++|||.++||+|-..+.
T Consensus 120 ~~~~~~~~~~vYV~n~~~~~~~vsvid~~t-~--~~~~~~~v------G-------~~P~~~a~~p~g~~vyv~~~~~~~ 183 (381)
T COG3391 120 GLAVDPDGKYVYVANAGNGNNTVSVIDAAT-N--KVTATIPV------G-------NTPTGVAVDPDGNKVYVTNSDDNT 183 (381)
T ss_pred eEEECCCCCEEEEEecccCCceEEEEeCCC-C--eEEEEEec------C-------CCcceEEECCCCCeEEEEecCCCe
Confidence 4789999999999999 689999997642 2 22222222 2 123889999999999999999999
Q ss_pred EEEEEecCCCCCeEEEEEEecceeecCCceeeeeCCCCCCCCCCccccCcccCCCCeeEEECCCCCEEEEEeCCCCcccc
Q 027522 82 IRQYNIEDPKNPVLTGQIWVGGLFRKGSPVVAVTDDGQPYQSDVPEVQGHRLRGGPQMIQLSLDGKRLYVTNSLFSAWDC 161 (222)
Q Consensus 82 I~vf~i~d~~~~~L~~~v~~gG~~~~~~~~~~~~~~~~~~~p~~~~v~G~~~~ggPr~~~lspdGk~LyvaNsl~~~wd~ 161 (222)
|.+++.+. ..+.. ...+. ....|.. |+.+.++|||+++||+|
T Consensus 184 v~vi~~~~---~~v~~--~~~~~---------------------~~~~~~~----P~~i~v~~~g~~~yV~~-------- 225 (381)
T COG3391 184 VSVIDTSG---NSVVR--GSVGS---------------------LVGVGTG----PAGIAVDPDGNRVYVAN-------- 225 (381)
T ss_pred EEEEeCCC---cceec--ccccc---------------------ccccCCC----CceEEECCCCCEEEEEe--------
Confidence 99998532 33321 11000 0012444 99999999999999999
Q ss_pred ccccccccCCcEEEEEEeeCCCCCe
Q 027522 162 QFYPELKEKGSHMLQIDVNSEKGGM 186 (222)
Q Consensus 162 Q~yp~~~s~~~~i~~~dvd~~~G~l 186 (222)
+. +....+.++ |..++.+
T Consensus 226 ~~-----~~~~~v~~i--d~~~~~v 243 (381)
T COG3391 226 DG-----SGSNNVLKI--DTATGNV 243 (381)
T ss_pred cc-----CCCceEEEE--eCCCceE
Confidence 54 223577777 4466655
No 19
>TIGR02276 beta_rpt_yvtn 40-residue YVTN family beta-propeller repeat. This repeat of about 40 amino acids is found in up to 14 copies per protein. Archaea Methanosarcina mazei and Methanosarcina acetivorans each have over 10 genes that encode tandem copies of this repeat, which is also found in other species. PSIPRED predicts with high confidence that each 40-residue repeats contains four beta strands. This model overlaps somewhat with the NHL repeat (Pfam pfam01436) and also shows sequence similarity to the WD domain, G-beta repeat (Pfam pfam00400).
Probab=98.52 E-value=3.5e-07 Score=58.40 Aligned_cols=32 Identities=19% Similarity=0.133 Sum_probs=27.9
Q ss_pred CCCCEEEEEeCCCCcEEEEEecCCCCCeEEEEEEe
Q 027522 67 LDDRFLYFSNWLHGDIRQYNIEDPKNPVLTGQIWV 101 (222)
Q Consensus 67 pDgrfLYvSnRgh~sI~vf~i~d~~~~~L~~~v~~ 101 (222)
||+++||||||++++|++++. .+++++.++.+
T Consensus 1 pd~~~lyv~~~~~~~v~~id~---~~~~~~~~i~v 32 (42)
T TIGR02276 1 PDGTKLYVTNSGSNTVSVIDT---ATNKVIATIPV 32 (42)
T ss_pred CCCCEEEEEeCCCCEEEEEEC---CCCeEEEEEEC
Confidence 799999999999999999976 35778888887
No 20
>PRK02888 nitrous-oxide reductase; Validated
Probab=98.47 E-value=1.9e-06 Score=85.73 Aligned_cols=122 Identities=13% Similarity=0.206 Sum_probs=78.6
Q ss_pred EEEcCCCCeEEEEe---ccCceEEEEEeC-----------------CCCCeeEE-----EEEEecC-----cccccccCC
Q 027522 5 FLHDPSKDIGFVGC---ALASTMVRFSKT-----------------QDGSWNHE-----VAISVKS-----LKVQNWILP 54 (222)
Q Consensus 5 ~afhP~g~~aYvv~---ELsstV~~~~~d-----------------~~g~~~~~-----q~is~~p-----~~~~g~~~~ 54 (222)
..++|+|+++|+.| |.+.++..+... ++|+.... .++.... ..+.. .-
T Consensus 240 v~~spdGk~afvTsyNsE~G~tl~em~a~e~d~~vvfni~~iea~vkdGK~~~V~gn~V~VID~~t~~~~~~~v~~--yI 317 (635)
T PRK02888 240 VDTDYDGKYAFSTCYNSEEGVTLAEMMAAERDWVVVFNIARIEEAVKAGKFKTIGGSKVPVVDGRKAANAGSALTR--YV 317 (635)
T ss_pred ceECCCCCEEEEeccCcccCcceeeeccccCceEEEEchHHHHHhhhCCCEEEECCCEEEEEECCccccCCcceEE--EE
Confidence 47899999999998 887776665221 12332221 2222211 01111 12
Q ss_pred CCCCceeEEEEcCCCCEEEEEeCCCCcEEEEEecCCCC---------CeEEEEEEecceeecCCceeeeeCCCCCCCCCC
Q 027522 55 EMPGLITDFLISLDDRFLYFSNWLHGDIRQYNIEDPKN---------PVLTGQIWVGGLFRKGSPVVAVTDDGQPYQSDV 125 (222)
Q Consensus 55 ~~~~~~adI~iSpDgrfLYvSnRgh~sI~vf~i~d~~~---------~~L~~~v~~gG~~~~~~~~~~~~~~~~~~~p~~ 125 (222)
++|..+-.|.+|||||++||+|...+++.|++++.-.. -.+++++.+
T Consensus 318 PVGKsPHGV~vSPDGkylyVanklS~tVSVIDv~k~k~~~~~~~~~~~~vvaevev------------------------ 373 (635)
T PRK02888 318 PVPKNPHGVNTSPDGKYFIANGKLSPTVTVIDVRKLDDLFDGKIKPRDAVVAEPEL------------------------ 373 (635)
T ss_pred ECCCCccceEECCCCCEEEEeCCCCCcEEEEEChhhhhhhhccCCccceEEEeecc------------------------
Confidence 25677899999999999999999999999999964111 123444444
Q ss_pred ccccCcccCCCCeeEEECCCCCEEEEEe---CCCCcccc
Q 027522 126 PEVQGHRLRGGPQMIQLSLDGKRLYVTN---SLFSAWDC 161 (222)
Q Consensus 126 ~~v~G~~~~ggPr~~~lspdGk~LyvaN---sl~~~wd~ 161 (222)
|.. |.+-+++++|+ .|++- |-..+|+=
T Consensus 374 ----GlG----PLHTaFDg~G~-aytslf~dsqv~kwn~ 403 (635)
T PRK02888 374 ----GLG----PLHTAFDGRGN-AYTTLFLDSQIVKWNI 403 (635)
T ss_pred ----CCC----cceEEECCCCC-EEEeEeecceeEEEeh
Confidence 565 99999999996 77763 23345663
No 21
>PLN02919 haloacid dehalogenase-like hydrolase family protein
Probab=98.36 E-value=1.3e-05 Score=83.85 Aligned_cols=146 Identities=16% Similarity=0.214 Sum_probs=86.3
Q ss_pred EEEcCCCCeEEEEeccCceEEEEEeCCCCCeeEEEEEEec--Ccccccc-cCCCCCCceeEEEEcCCCCEEEEEeCCCCc
Q 027522 5 FLHDPSKDIGFVGCALASTMVRFSKTQDGSWNHEVAISVK--SLKVQNW-ILPEMPGLITDFLISLDDRFLYFSNWLHGD 81 (222)
Q Consensus 5 ~afhP~g~~aYvv~ELsstV~~~~~d~~g~~~~~q~is~~--p~~~~g~-~~~~~~~~~adI~iSpDgrfLYvSnRgh~s 81 (222)
++|+|++..+||.+..++.|+++... +|... ++.-. .....+. .....-+.+..|.+||||++|||++.+.+.
T Consensus 688 Va~dp~~g~LyVad~~~~~I~v~d~~-~g~v~---~~~G~G~~~~~~g~~~~~~~~~~P~GIavspdG~~LYVADs~n~~ 763 (1057)
T PLN02919 688 VCFEPVNEKVYIAMAGQHQIWEYNIS-DGVTR---VFSGDGYERNLNGSSGTSTSFAQPSGISLSPDLKELYIADSESSS 763 (1057)
T ss_pred EEEecCCCeEEEEECCCCeEEEEECC-CCeEE---EEecCCccccCCCCccccccccCccEEEEeCCCCEEEEEECCCCe
Confidence 68899899999999999999998763 33321 11100 0000010 000011457899999999999999999999
Q ss_pred EEEEEecCCCCCeEEEEEEecce--eecCCceeeeeCCCCCCCCCCccccCcccCCCCeeEEECCCCCEEEEEeCCCCcc
Q 027522 82 IRQYNIEDPKNPVLTGQIWVGGL--FRKGSPVVAVTDDGQPYQSDVPEVQGHRLRGGPQMIQLSLDGKRLYVTNSLFSAW 159 (222)
Q Consensus 82 I~vf~i~d~~~~~L~~~v~~gG~--~~~~~~~~~~~~~~~~~~p~~~~v~G~~~~ggPr~~~lspdGk~LyvaNsl~~~w 159 (222)
|++|+++. +..++ ..||. ++. ...-.++.+ -+ ...+... .|+-++++++|+ ||||+
T Consensus 764 Irv~D~~t-g~~~~----~~gg~~~~~~--~l~~fG~~d---G~-g~~~~l~----~P~Gvavd~dG~-LYVAD------ 821 (1057)
T PLN02919 764 IRALDLKT-GGSRL----LAGGDPTFSD--NLFKFGDHD---GV-GSEVLLQ----HPLGVLCAKDGQ-IYVAD------ 821 (1057)
T ss_pred EEEEECCC-CcEEE----EEecccccCc--ccccccCCC---Cc-hhhhhcc----CCceeeEeCCCc-EEEEE------
Confidence 99998853 22222 22221 000 000000000 00 0001122 399999999997 99999
Q ss_pred ccccccccccCCcEEEEEEeeCCCCCee
Q 027522 160 DCQFYPELKEKGSHMLQIDVNSEKGGMA 187 (222)
Q Consensus 160 d~Q~yp~~~s~~~~i~~~dvd~~~G~l~ 187 (222)
+.+..|.++|. ++|.+.
T Consensus 822 ---------s~N~rIrviD~--~tg~v~ 838 (1057)
T PLN02919 822 ---------SYNHKIKKLDP--ATKRVT 838 (1057)
T ss_pred ---------CCCCEEEEEEC--CCCeEE
Confidence 46888888854 667663
No 22
>PRK02888 nitrous-oxide reductase; Validated
Probab=98.29 E-value=9.6e-06 Score=80.81 Aligned_cols=123 Identities=14% Similarity=0.076 Sum_probs=72.5
Q ss_pred EeEEEcCCCCeEEEEeccCceEEEEEeCCCCCeeEEEEEEecCcccccccCCCCCCceeEEEEcCCCCEEEEEeC---C-
Q 027522 3 IRFLHDPSKDIGFVGCALASTMVRFSKTQDGSWNHEVAISVKSLKVQNWILPEMPGLITDFLISLDDRFLYFSNW---L- 78 (222)
Q Consensus 3 vr~afhP~g~~aYvv~ELsstV~~~~~d~~g~~~~~q~is~~p~~~~g~~~~~~~~~~adI~iSpDgrfLYvSnR---g- 78 (222)
-|.=+.|+|+.+++-+|-.+.|+++.-+ +++....+.+.. .+--+.+|+||+++|++|- .
T Consensus 196 ~~~PlpnDGk~l~~~~ey~~~vSvID~e---tmeV~~qV~Vdg-------------npd~v~~spdGk~afvTsyNsE~G 259 (635)
T PRK02888 196 FRIPLPNDGKDLDDPKKYRSLFTAVDAE---TMEVAWQVMVDG-------------NLDNVDTDYDGKYAFSTCYNSEEG 259 (635)
T ss_pred cccccCCCCCEeecccceeEEEEEEECc---cceEEEEEEeCC-------------CcccceECCCCCEEEEeccCcccC
Confidence 3555788999999999999999988542 455555555432 2356789999999999972 1
Q ss_pred ----------CCcEEEEEecC----CCCCeEEEEEEecceeecCCceeeeeCCC--C-CCCCCCccccCcccCCCCeeEE
Q 027522 79 ----------HGDIRQYNIED----PKNPVLTGQIWVGGLFRKGSPVVAVTDDG--Q-PYQSDVPEVQGHRLRGGPQMIQ 141 (222)
Q Consensus 79 ----------h~sI~vf~i~d----~~~~~L~~~v~~gG~~~~~~~~~~~~~~~--~-~~~p~~~~v~G~~~~ggPr~~~ 141 (222)
.+.+.+|++.. -..++. ..++ +..|.|+.-.. . .......-.-|+. |--++
T Consensus 260 ~tl~em~a~e~d~~vvfni~~iea~vkdGK~---~~V~-----gn~V~VID~~t~~~~~~~v~~yIPVGKs----PHGV~ 327 (635)
T PRK02888 260 VTLAEMMAAERDWVVVFNIARIEEAVKAGKF---KTIG-----GSKVPVVDGRKAANAGSALTRYVPVPKN----PHGVN 327 (635)
T ss_pred cceeeeccccCceEEEEchHHHHHhhhCCCE---EEEC-----CCEEEEEECCccccCCcceEEEEECCCC----ccceE
Confidence 22344444421 001111 1111 12344442111 0 0111112223777 99999
Q ss_pred ECCCCCEEEEEe
Q 027522 142 LSLDGKRLYVTN 153 (222)
Q Consensus 142 lspdGk~LyvaN 153 (222)
+|||||++||+|
T Consensus 328 vSPDGkylyVan 339 (635)
T PRK02888 328 TSPDGKYFIANG 339 (635)
T ss_pred ECCCCCEEEEeC
Confidence 999999999999
No 23
>PF08662 eIF2A: Eukaryotic translation initiation factor eIF2A; InterPro: IPR013979 This entry contains beta propellor domains found in eukaryotic translation initiation factors and TolB domain-containing proteins.
Probab=98.21 E-value=6.9e-05 Score=63.61 Aligned_cols=98 Identities=14% Similarity=0.171 Sum_probs=67.0
Q ss_pred EeEEEcCCCCeEEEEe-ccCceEEEEEeCCCCCeeEEEEEEecCcccccccCCCCCCceeEEEEcCCCCEEEEEeCC--C
Q 027522 3 IRFLHDPSKDIGFVGC-ALASTMVRFSKTQDGSWNHEVAISVKSLKVQNWILPEMPGLITDFLISLDDRFLYFSNWL--H 79 (222)
Q Consensus 3 vr~afhP~g~~aYvv~-ELsstV~~~~~d~~g~~~~~q~is~~p~~~~g~~~~~~~~~~adI~iSpDgrfLYvSnRg--h 79 (222)
..++++|+|+...|+. +...+|..|... .+++.++.. ...-.|..||+|++|-++..+ .
T Consensus 63 ~~~~WsP~g~~favi~g~~~~~v~lyd~~------~~~i~~~~~------------~~~n~i~wsP~G~~l~~~g~~n~~ 124 (194)
T PF08662_consen 63 HDVAWSPNGNEFAVIYGSMPAKVTLYDVK------GKKIFSFGT------------QPRNTISWSPDGRFLVLAGFGNLN 124 (194)
T ss_pred EEEEECcCCCEEEEEEccCCcccEEEcCc------ccEeEeecC------------CCceEEEECCCCCEEEEEEccCCC
Confidence 4689999998877774 566677777542 122223321 112469999999999999876 4
Q ss_pred CcEEEEEecCCCCCeEEEEEEecceeecCCceeeeeCCCCCCCCCCccccCcccCCCCeeEEECCCCCEEEEEeC
Q 027522 80 GDIRQYNIEDPKNPVLTGQIWVGGLFRKGSPVVAVTDDGQPYQSDVPEVQGHRLRGGPQMIQLSLDGKRLYVTNS 154 (222)
Q Consensus 80 ~sI~vf~i~d~~~~~L~~~v~~gG~~~~~~~~~~~~~~~~~~~p~~~~v~G~~~~ggPr~~~lspdGk~LyvaNs 154 (222)
|.|.+|++. +.+.+.+.... ....++.||||++|..|.+
T Consensus 125 G~l~~wd~~---~~~~i~~~~~~---------------------------------~~t~~~WsPdGr~~~ta~t 163 (194)
T PF08662_consen 125 GDLEFWDVR---KKKKISTFEHS---------------------------------DATDVEWSPDGRYLATATT 163 (194)
T ss_pred cEEEEEECC---CCEEeeccccC---------------------------------cEEEEEEcCCCCEEEEEEe
Confidence 789999985 34453332221 1568999999999999873
No 24
>PLN02919 haloacid dehalogenase-like hydrolase family protein
Probab=98.20 E-value=4.6e-05 Score=79.83 Aligned_cols=149 Identities=15% Similarity=0.134 Sum_probs=87.6
Q ss_pred EEEcCCCCeEEEEeccCceEEEEEeCCCCCeeEEEEE-EecCc---cc---ccccCCCCCCceeEEEEcCCCCEEEEEeC
Q 027522 5 FLHDPSKDIGFVGCALASTMVRFSKTQDGSWNHEVAI-SVKSL---KV---QNWILPEMPGLITDFLISLDDRFLYFSNW 77 (222)
Q Consensus 5 ~afhP~g~~aYvv~ELsstV~~~~~d~~g~~~~~q~i-s~~p~---~~---~g~~~~~~~~~~adI~iSpDgrfLYvSnR 77 (222)
++++|+++++||.+.-+++|.+|..+. |......-. .+.+. .+ .|......-..+..|.+++||+ |||+++
T Consensus 745 IavspdG~~LYVADs~n~~Irv~D~~t-g~~~~~~gg~~~~~~~l~~fG~~dG~g~~~~l~~P~Gvavd~dG~-LYVADs 822 (1057)
T PLN02919 745 ISLSPDLKELYIADSESSSIRALDLKT-GGSRLLAGGDPTFSDNLFKFGDHDGVGSEVLLQHPLGVLCAKDGQ-IYVADS 822 (1057)
T ss_pred EEEeCCCCEEEEEECCCCeEEEEECCC-CcEEEEEecccccCcccccccCCCCchhhhhccCCceeeEeCCCc-EEEEEC
Confidence 789999999999999999999998753 332111000 00000 00 0100000113467999999998 999999
Q ss_pred CCCcEEEEEecCCCCCeEEEEEEecceeecCCceeeeeCCCCCCCCCCccccCcccCCCCeeEEECCCCCEEEEEeCCCC
Q 027522 78 LHGDIRQYNIEDPKNPVLTGQIWVGGLFRKGSPVVAVTDDGQPYQSDVPEVQGHRLRGGPQMIQLSLDGKRLYVTNSLFS 157 (222)
Q Consensus 78 gh~sI~vf~i~d~~~~~L~~~v~~gG~~~~~~~~~~~~~~~~~~~p~~~~v~G~~~~ggPr~~~lspdGk~LyvaNsl~~ 157 (222)
+.+.|++|+.+. +++.....+|..-..++ +. ...+-. .|+-++++++|+ ||||+
T Consensus 823 ~N~rIrviD~~t---g~v~tiaG~G~~G~~dG-------------~~-~~a~l~----~P~GIavd~dG~-lyVaD---- 876 (1057)
T PLN02919 823 YNHKIKKLDPAT---KRVTTLAGTGKAGFKDG-------------KA-LKAQLS----EPAGLALGENGR-LFVAD---- 876 (1057)
T ss_pred CCCEEEEEECCC---CeEEEEeccCCcCCCCC-------------cc-cccccC----CceEEEEeCCCC-EEEEE----
Confidence 999999998732 44422222211000000 00 001112 399999999996 99999
Q ss_pred ccccccccccccCCcEEEEEEeeCCCCCeeeccceeEec
Q 027522 158 AWDCQFYPELKEKGSHMLQIDVNSEKGGMAINPNFFVDF 196 (222)
Q Consensus 158 ~wd~Q~yp~~~s~~~~i~~~dvd~~~G~l~~~~~f~vdf 196 (222)
+.+..|.++|. .++.+. +-+.+++
T Consensus 877 -----------t~Nn~Irvid~--~~~~~~--~~~~l~~ 900 (1057)
T PLN02919 877 -----------TNNSLIRYLDL--NKGEAA--EILTLEL 900 (1057)
T ss_pred -----------CCCCEEEEEEC--CCCccc--eeEeecc
Confidence 46778888866 555431 2234555
No 25
>PF07433 DUF1513: Protein of unknown function (DUF1513); InterPro: IPR008311 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=98.15 E-value=4.2e-05 Score=70.55 Aligned_cols=103 Identities=21% Similarity=0.254 Sum_probs=68.4
Q ss_pred EEEcCCCCeEEEEeccCce-EEEEEeCCCCCeeEEEEEEecC-cccccccCCCCCCceeEEEEcCCCCEEEEEeC----C
Q 027522 5 FLHDPSKDIGFVGCALAST-MVRFSKTQDGSWNHEVAISVKS-LKVQNWILPEMPGLITDFLISLDDRFLYFSNW----L 78 (222)
Q Consensus 5 ~afhP~g~~aYvv~ELsst-V~~~~~d~~g~~~~~q~is~~p-~~~~g~~~~~~~~~~adI~iSpDgrfLYvSnR----g 78 (222)
++.||+...+-++.==-.+ ..+|.. .+|+ ..+.+..++ ..| --.=..|+|||+||++-- +
T Consensus 10 ~a~~p~~~~avafaRRPG~~~~v~D~-~~g~--~~~~~~a~~gRHF-----------yGHg~fs~dG~~LytTEnd~~~g 75 (305)
T PF07433_consen 10 VAAHPTRPEAVAFARRPGTFALVFDC-RTGQ--LLQRLWAPPGRHF-----------YGHGVFSPDGRLLYTTENDYETG 75 (305)
T ss_pred eeeCCCCCeEEEEEeCCCcEEEEEEc-CCCc--eeeEEcCCCCCEE-----------ecCEEEcCCCCEEEEeccccCCC
Confidence 3566755555544444444 333433 2343 234444332 222 245679999999999944 6
Q ss_pred CCcEEEEEecCCCCCeEEEEEEecceeecCCceeeeeCCCCCCCCCCccccCcccCCCCeeEEECCCCCEEEEEeC
Q 027522 79 HGDIRQYNIEDPKNPVLTGQIWVGGLFRKGSPVVAVTDDGQPYQSDVPEVQGHRLRGGPQMIQLSLDGKRLYVTNS 154 (222)
Q Consensus 79 h~sI~vf~i~d~~~~~L~~~v~~gG~~~~~~~~~~~~~~~~~~~p~~~~v~G~~~~ggPr~~~lspdGk~LyvaNs 154 (222)
.|-|.||+.. ...+.+++.+++|+ ||=.+.+.|||+.|.|||-
T Consensus 76 ~G~IgVyd~~--~~~~ri~E~~s~GI-------------------------------GPHel~l~pDG~tLvVANG 118 (305)
T PF07433_consen 76 RGVIGVYDAA--RGYRRIGEFPSHGI-------------------------------GPHELLLMPDGETLVVANG 118 (305)
T ss_pred cEEEEEEECc--CCcEEEeEecCCCc-------------------------------ChhhEEEcCCCCEEEEEcC
Confidence 7899999985 35677788888765 3889999999999999993
No 26
>PF06433 Me-amine-dh_H: Methylamine dehydrogenase heavy chain (MADH); InterPro: IPR009451 Methylamine dehydrogenase (1.4.99.3 from EC) is a periplasmic quinoprotein found in several methyltrophic bacteria []. It is induced when grown on methylamine as a carbon source MADH and catalyses the oxidative deamination of amines to their corresponding aldehydes. The redox cofactor of this enzyme is tryptophan tryptophylquinone (TTQ). Electrons derived from the oxidation of methylamine are passed to an electron acceptor, which is usually the blue-copper protein amicyanin (IPR002386 from INTERPRO). RCH2NH2 + H2O + acceptor = RCHO + NH3 + reduced acceptor MADH is a hetero-tetramer, comprised of two heavy subunits and two light subunits. The heavy subunit forms a seven-bladed beta-propeller like structure [].; GO: 0030058 amine dehydrogenase activity, 0030416 methylamine metabolic process, 0055114 oxidation-reduction process, 0042597 periplasmic space; PDB: 3RN1_F 3SVW_F 3PXT_F 3L4O_F 3L4M_D 3SJL_F 3PXS_D 3ORV_F 3RMZ_F 3RLM_F ....
Probab=98.11 E-value=6.4e-05 Score=70.30 Aligned_cols=100 Identities=21% Similarity=0.238 Sum_probs=62.8
Q ss_pred CCCeEEEEec----cCceEEEEEeCCCCCeeEEEEEEecCcccccccCCCCCCceeEEEEcCCCCEEEEEe-------CC
Q 027522 10 SKDIGFVGCA----LASTMVRFSKTQDGSWNHEVAISVKSLKVQNWILPEMPGLITDFLISLDDRFLYFSN-------WL 78 (222)
Q Consensus 10 ~g~~aYvv~E----LsstV~~~~~d~~g~~~~~q~is~~p~~~~g~~~~~~~~~~adI~iSpDgrfLYvSn-------Rg 78 (222)
|.+++||+.- +.+.|+++.-+ +++ .+-.+++ +..+.+.+|||||++|+++ ||
T Consensus 1 ~~~rvyV~D~~~~~~~~rv~viD~d-~~k--~lGmi~~--------------g~~~~~~~spdgk~~y~a~T~~sR~~rG 63 (342)
T PF06433_consen 1 DAHRVYVQDPVFFHMTSRVYVIDAD-SGK--LLGMIDT--------------GFLGNVALSPDGKTIYVAETFYSRGTRG 63 (342)
T ss_dssp -TTEEEEEE-GGGGSSEEEEEEETT-TTE--EEEEEEE--------------ESSEEEEE-TTSSEEEEEEEEEEETTEE
T ss_pred CCcEEEEECCccccccceEEEEECC-CCc--EEEEeec--------------ccCCceeECCCCCEEEEEEEEEeccccc
Confidence 4578888876 55677777643 343 3444443 2346788999999999864 23
Q ss_pred --CCcEEEEEecCCCCCeEEEEEEecceeecCCceeeeeCCCCCCCCCCccccCcccCCCCeeEEECCCCCEEEEEe
Q 027522 79 --HGDIRQYNIEDPKNPVLTGQIWVGGLFRKGSPVVAVTDDGQPYQSDVPEVQGHRLRGGPQMIQLSLDGKRLYVTN 153 (222)
Q Consensus 79 --h~sI~vf~i~d~~~~~L~~~v~~gG~~~~~~~~~~~~~~~~~~~p~~~~v~G~~~~ggPr~~~lspdGk~LyvaN 153 (222)
.|-|.+||. .+++..+.|.+-+. .+-.-+-. +++++||.|||||||.|
T Consensus 64 ~RtDvv~~~D~---~TL~~~~EI~iP~k--------------------~R~~~~~~----~~~~~ls~dgk~~~V~N 113 (342)
T PF06433_consen 64 ERTDVVEIWDT---QTLSPTGEIEIPPK--------------------PRAQVVPY----KNMFALSADGKFLYVQN 113 (342)
T ss_dssp EEEEEEEEEET---TTTEEEEEEEETTS---------------------B--BS------GGGEEE-TTSSEEEEEE
T ss_pred cceeEEEEEec---CcCcccceEecCCc--------------------chheeccc----ccceEEccCCcEEEEEc
Confidence 466888865 45878777776210 01011233 89999999999999999
No 27
>PRK04792 tolB translocation protein TolB; Provisional
Probab=97.87 E-value=0.0005 Score=65.16 Aligned_cols=120 Identities=13% Similarity=0.135 Sum_probs=65.5
Q ss_pred eEEEcCCCCeEEEEeccCce--EEEEEeCCCCCeeEEEEEEecCcccccccCCCCCCceeEEEEcCCCCEEEEEeCCCCc
Q 027522 4 RFLHDPSKDIGFVGCALAST--MVRFSKTQDGSWNHEVAISVKSLKVQNWILPEMPGLITDFLISLDDRFLYFSNWLHGD 81 (222)
Q Consensus 4 r~afhP~g~~aYvv~ELsst--V~~~~~d~~g~~~~~q~is~~p~~~~g~~~~~~~~~~adI~iSpDgrfLYvSnRgh~s 81 (222)
.++|+|+|+++++...-+.. |+++..+ .++.+ .++.. . ........||||++|+++....+.
T Consensus 266 ~~~wSPDG~~La~~~~~~g~~~Iy~~dl~-tg~~~---~lt~~----~--------~~~~~p~wSpDG~~I~f~s~~~g~ 329 (448)
T PRK04792 266 APRFSPDGKKLALVLSKDGQPEIYVVDIA-TKALT---RITRH----R--------AIDTEPSWHPDGKSLIFTSERGGK 329 (448)
T ss_pred CeeECCCCCEEEEEEeCCCCeEEEEEECC-CCCeE---ECccC----C--------CCccceEECCCCCEEEEEECCCCC
Confidence 36799999977665443443 5555442 34331 11111 0 122567899999998765544445
Q ss_pred EEEEEecCCCCCeEEEEEEecceeecCCceeeeeCCCCCCCCCCccccCcccCCCCeeEEECCCCCEEEEEeCCCCcccc
Q 027522 82 IRQYNIEDPKNPVLTGQIWVGGLFRKGSPVVAVTDDGQPYQSDVPEVQGHRLRGGPQMIQLSLDGKRLYVTNSLFSAWDC 161 (222)
Q Consensus 82 I~vf~i~d~~~~~L~~~v~~gG~~~~~~~~~~~~~~~~~~~p~~~~v~G~~~~ggPr~~~lspdGk~LyvaNsl~~~wd~ 161 (222)
..+|.++- ..++. .++... |.. ....++||||++|+.++
T Consensus 330 ~~Iy~~dl-~~g~~-~~Lt~~---------------------------g~~----~~~~~~SpDG~~l~~~~-------- 368 (448)
T PRK04792 330 PQIYRVNL-ASGKV-SRLTFE---------------------------GEQ----NLGGSITPDGRSMIMVN-------- 368 (448)
T ss_pred ceEEEEEC-CCCCE-EEEecC---------------------------CCC----CcCeeECCCCCEEEEEE--------
Confidence 55555532 22322 122221 122 22347899999999987
Q ss_pred ccccccccCCcEEEEEEeeCCCCCee
Q 027522 162 QFYPELKEKGSHMLQIDVNSEKGGMA 187 (222)
Q Consensus 162 Q~yp~~~s~~~~i~~~dvd~~~G~l~ 187 (222)
+. .....++.+|. .+|.++
T Consensus 369 ~~-----~g~~~I~~~dl--~~g~~~ 387 (448)
T PRK04792 369 RT-----NGKFNIARQDL--ETGAMQ 387 (448)
T ss_pred ec-----CCceEEEEEEC--CCCCeE
Confidence 32 23346666644 667664
No 28
>PRK03629 tolB translocation protein TolB; Provisional
Probab=97.79 E-value=0.001 Score=62.63 Aligned_cols=121 Identities=17% Similarity=0.163 Sum_probs=68.1
Q ss_pred EEEcCCCCeEEEEeccCc--eEEEEEeCCCCCeeEEEEEEecCcccccccCCCCCCceeEEEEcCCCCEE-EEEeCCCCc
Q 027522 5 FLHDPSKDIGFVGCALAS--TMVRFSKTQDGSWNHEVAISVKSLKVQNWILPEMPGLITDFLISLDDRFL-YFSNWLHGD 81 (222)
Q Consensus 5 ~afhP~g~~aYvv~ELss--tV~~~~~d~~g~~~~~q~is~~p~~~~g~~~~~~~~~~adI~iSpDgrfL-YvSnRgh~s 81 (222)
++|+|||++++++...+. .|+++..+ .|+.. + + .... ........||||++| |+|+|. +.
T Consensus 248 ~~~SPDG~~La~~~~~~g~~~I~~~d~~-tg~~~--~-l--t~~~----------~~~~~~~wSPDG~~I~f~s~~~-g~ 310 (429)
T PRK03629 248 PAFSPDGSKLAFALSKTGSLNLYVMDLA-SGQIR--Q-V--TDGR----------SNNTEPTWFPDSQNLAYTSDQA-GR 310 (429)
T ss_pred eEECCCCCEEEEEEcCCCCcEEEEEECC-CCCEE--E-c--cCCC----------CCcCceEECCCCCEEEEEeCCC-CC
Confidence 579999998877654443 46666543 34332 1 1 1111 223678899999977 677764 34
Q ss_pred EEEEEecCCCCCeEEEEEEecceeecCCceeeeeCCCCCCCCCCccccCcccCCCCeeEEECCCCCEEEEEeCCCCcccc
Q 027522 82 IRQYNIEDPKNPVLTGQIWVGGLFRKGSPVVAVTDDGQPYQSDVPEVQGHRLRGGPQMIQLSLDGKRLYVTNSLFSAWDC 161 (222)
Q Consensus 82 I~vf~i~d~~~~~L~~~v~~gG~~~~~~~~~~~~~~~~~~~p~~~~v~G~~~~ggPr~~~lspdGk~LyvaNsl~~~wd~ 161 (222)
..+|.++- ..+.. .++... |.. .....+||||++|+.++
T Consensus 311 ~~Iy~~d~-~~g~~-~~lt~~---------------------------~~~----~~~~~~SpDG~~Ia~~~-------- 349 (429)
T PRK03629 311 PQVYKVNI-NGGAP-QRITWE---------------------------GSQ----NQDADVSSDGKFMVMVS-------- 349 (429)
T ss_pred ceEEEEEC-CCCCe-EEeecC---------------------------CCC----ccCEEECCCCCEEEEEE--------
Confidence 56665532 22222 222221 122 45678999999998876
Q ss_pred ccccccccCCcEEEEEEeeCCCCCee-ecc
Q 027522 162 QFYPELKEKGSHMLQIDVNSEKGGMA-INP 190 (222)
Q Consensus 162 Q~yp~~~s~~~~i~~~dvd~~~G~l~-~~~ 190 (222)
+. .....++.+|. ++|.++ +..
T Consensus 350 ~~-----~g~~~I~~~dl--~~g~~~~Lt~ 372 (429)
T PRK03629 350 SN-----GGQQHIAKQDL--ATGGVQVLTD 372 (429)
T ss_pred cc-----CCCceEEEEEC--CCCCeEEeCC
Confidence 21 22345666644 667664 443
No 29
>PRK02889 tolB translocation protein TolB; Provisional
Probab=97.71 E-value=0.0014 Score=61.38 Aligned_cols=70 Identities=11% Similarity=0.143 Sum_probs=40.0
Q ss_pred eEEEcCCCCeEEEEeccCceEEEEEeCC-CCCeeEEEEEEecCcccccccCCCCCCceeEEEEcCCCCEEEEEeCCCC--
Q 027522 4 RFLHDPSKDIGFVGCALASTMVRFSKTQ-DGSWNHEVAISVKSLKVQNWILPEMPGLITDFLISLDDRFLYFSNWLHG-- 80 (222)
Q Consensus 4 r~afhP~g~~aYvv~ELsstV~~~~~d~-~g~~~~~q~is~~p~~~~g~~~~~~~~~~adI~iSpDgrfLYvSnRgh~-- 80 (222)
-..|+|||++++..+.-++...+|..+. .+.. +.++.. + .......+||||++|+.+++..+
T Consensus 288 ~~~wSpDG~~l~f~s~~~g~~~Iy~~~~~~g~~---~~lt~~-----g-------~~~~~~~~SpDG~~Ia~~s~~~g~~ 352 (427)
T PRK02889 288 EPFFSPDGRSIYFTSDRGGAPQIYRMPASGGAA---QRVTFT-----G-------SYNTSPRISPDGKLLAYISRVGGAF 352 (427)
T ss_pred CeEEcCCCCEEEEEecCCCCcEEEEEECCCCce---EEEecC-----C-------CCcCceEECCCCCEEEEEEccCCcE
Confidence 4679999998776665444444444332 2322 222221 1 11234679999999976654333
Q ss_pred cEEEEEec
Q 027522 81 DIRQYNIE 88 (222)
Q Consensus 81 sI~vf~i~ 88 (222)
.|.+|+++
T Consensus 353 ~I~v~d~~ 360 (427)
T PRK02889 353 KLYVQDLA 360 (427)
T ss_pred EEEEEECC
Confidence 57777763
No 30
>PRK01029 tolB translocation protein TolB; Provisional
Probab=97.60 E-value=0.0033 Score=59.45 Aligned_cols=36 Identities=17% Similarity=0.164 Sum_probs=23.1
Q ss_pred CeeEEECCCCCEEEEEeCCCCccccccccccccCCcEEEEEEeeCCCCCee
Q 027522 137 PQMIQLSLDGKRLYVTNSLFSAWDCQFYPELKEKGSHMLQIDVNSEKGGMA 187 (222)
Q Consensus 137 Pr~~~lspdGk~LyvaNsl~~~wd~Q~yp~~~s~~~~i~~~dvd~~~G~l~ 187 (222)
....++||||++|+.+. +. .....|+.+|+ ++|+++
T Consensus 329 ~~~p~wSPDG~~Laf~~--------~~-----~g~~~I~v~dl--~~g~~~ 364 (428)
T PRK01029 329 SSCPAWSPDGKKIAFCS--------VI-----KGVRQICVYDL--ATGRDY 364 (428)
T ss_pred ccceeECCCCCEEEEEE--------cC-----CCCcEEEEEEC--CCCCeE
Confidence 34568999999998776 21 12345666644 667663
No 31
>PRK02889 tolB translocation protein TolB; Provisional
Probab=97.54 E-value=0.0034 Score=58.90 Aligned_cols=67 Identities=16% Similarity=0.168 Sum_probs=36.4
Q ss_pred EEEcCCCCeEEEEeccCce--EEEEEeCCCCCeeEEEEEEecCcccccccCCCCCCceeEEEEcCCCCEEE-EEeCCCCc
Q 027522 5 FLHDPSKDIGFVGCALAST--MVRFSKTQDGSWNHEVAISVKSLKVQNWILPEMPGLITDFLISLDDRFLY-FSNWLHGD 81 (222)
Q Consensus 5 ~afhP~g~~aYvv~ELsst--V~~~~~d~~g~~~~~q~is~~p~~~~g~~~~~~~~~~adI~iSpDgrfLY-vSnRgh~s 81 (222)
.+|+|||+.+++...-+.. |+.+..+ .+.. +.+ ... . ........|||||+|+ +|+|+ +.
T Consensus 245 ~~~SPDG~~la~~~~~~g~~~Iy~~d~~-~~~~---~~l--t~~--~--------~~~~~~~wSpDG~~l~f~s~~~-g~ 307 (427)
T PRK02889 245 PAWSPDGRTLAVALSRDGNSQIYTVNAD-GSGL---RRL--TQS--S--------GIDTEPFFSPDGRSIYFTSDRG-GA 307 (427)
T ss_pred eEECCCCCEEEEEEccCCCceEEEEECC-CCCc---EEC--CCC--C--------CCCcCeEEcCCCCEEEEEecCC-CC
Confidence 5799999877665444444 4444332 2222 111 110 1 1124567999999876 67764 34
Q ss_pred EEEEEec
Q 027522 82 IRQYNIE 88 (222)
Q Consensus 82 I~vf~i~ 88 (222)
..+|.++
T Consensus 308 ~~Iy~~~ 314 (427)
T PRK02889 308 PQIYRMP 314 (427)
T ss_pred cEEEEEE
Confidence 5566653
No 32
>PRK00178 tolB translocation protein TolB; Provisional
Probab=97.53 E-value=0.0021 Score=59.58 Aligned_cols=67 Identities=7% Similarity=0.101 Sum_probs=40.5
Q ss_pred EEEcCCCCeEEEEeccCc--eEEEEEeCCCCCeeEEEEEEecCcccccccCCCCCCceeEEEEcCCCCEEEEEeCCCC--
Q 027522 5 FLHDPSKDIGFVGCALAS--TMVRFSKTQDGSWNHEVAISVKSLKVQNWILPEMPGLITDFLISLDDRFLYFSNWLHG-- 80 (222)
Q Consensus 5 ~afhP~g~~aYvv~ELss--tV~~~~~d~~g~~~~~q~is~~p~~~~g~~~~~~~~~~adI~iSpDgrfLYvSnRgh~-- 80 (222)
..|+|+|+.+|...+-+. .|+++.. ..|+.. .++.. + ...+...+||||++||.+++..+
T Consensus 292 ~~~spDg~~i~f~s~~~g~~~iy~~d~-~~g~~~---~lt~~-----~-------~~~~~~~~Spdg~~i~~~~~~~~~~ 355 (430)
T PRK00178 292 PFWGKDGRTLYFTSDRGGKPQIYKVNV-NGGRAE---RVTFV-----G-------NYNARPRLSADGKTLVMVHRQDGNF 355 (430)
T ss_pred eEECCCCCEEEEEECCCCCceEEEEEC-CCCCEE---EeecC-----C-------CCccceEECCCCCEEEEEEccCCce
Confidence 578999998777665443 3555443 234432 22211 1 11245679999999998887554
Q ss_pred cEEEEEe
Q 027522 81 DIRQYNI 87 (222)
Q Consensus 81 sI~vf~i 87 (222)
.|.++++
T Consensus 356 ~l~~~dl 362 (430)
T PRK00178 356 HVAAQDL 362 (430)
T ss_pred EEEEEEC
Confidence 4666665
No 33
>PRK04922 tolB translocation protein TolB; Provisional
Probab=97.52 E-value=0.0032 Score=58.95 Aligned_cols=100 Identities=13% Similarity=0.118 Sum_probs=54.5
Q ss_pred eEEEcCCCCeEEEEeccC--ceEEEEEeCCCCCeeEEEEEEecCcccccccCCCCCCceeEEEEcCCCCEEE-EEeCCCC
Q 027522 4 RFLHDPSKDIGFVGCALA--STMVRFSKTQDGSWNHEVAISVKSLKVQNWILPEMPGLITDFLISLDDRFLY-FSNWLHG 80 (222)
Q Consensus 4 r~afhP~g~~aYvv~ELs--stV~~~~~d~~g~~~~~q~is~~p~~~~g~~~~~~~~~~adI~iSpDgrfLY-vSnRgh~ 80 (222)
-..|+|+|+.+++...-+ ..|+++..+ .|.. .+ ++ .. . ........||||++|+ +|+|. +
T Consensus 252 ~~~~SpDG~~l~~~~s~~g~~~Iy~~d~~-~g~~--~~-lt--~~--~--------~~~~~~~~spDG~~l~f~sd~~-g 314 (433)
T PRK04922 252 APSFSPDGRRLALTLSRDGNPEIYVMDLG-SRQL--TR-LT--NH--F--------GIDTEPTWAPDGKSIYFTSDRG-G 314 (433)
T ss_pred CceECCCCCEEEEEEeCCCCceEEEEECC-CCCe--EE-Cc--cC--C--------CCccceEECCCCCEEEEEECCC-C
Confidence 357999998776543222 347776553 3432 11 11 11 0 1125678999999876 45553 3
Q ss_pred cEEEEEecCCCCCeEEEEEEecceeecCCceeeeeCCCCCCCCCCccccCcccCCCCeeEEECCCCCEEEEEe
Q 027522 81 DIRQYNIEDPKNPVLTGQIWVGGLFRKGSPVVAVTDDGQPYQSDVPEVQGHRLRGGPQMIQLSLDGKRLYVTN 153 (222)
Q Consensus 81 sI~vf~i~d~~~~~L~~~v~~gG~~~~~~~~~~~~~~~~~~~p~~~~v~G~~~~ggPr~~~lspdGk~LyvaN 153 (222)
...+|.++- ..++. .++... |.. ....++||||++|++++
T Consensus 315 ~~~iy~~dl-~~g~~-~~lt~~---------------------------g~~----~~~~~~SpDG~~Ia~~~ 354 (433)
T PRK04922 315 RPQIYRVAA-SGGSA-ERLTFQ---------------------------GNY----NARASVSPDGKKIAMVH 354 (433)
T ss_pred CceEEEEEC-CCCCe-EEeecC---------------------------CCC----ccCEEECCCCCEEEEEE
Confidence 444454422 11222 122221 222 44578999999999886
No 34
>PRK01742 tolB translocation protein TolB; Provisional
Probab=97.52 E-value=0.0029 Score=59.28 Aligned_cols=68 Identities=15% Similarity=0.041 Sum_probs=39.9
Q ss_pred EEEcCCCCeEEEE-ecc-CceEEEEEeCCCCCeeEEEEEEecCcccccccCCCCCCceeEEEEcCCCCEEEEEeCCCCcE
Q 027522 5 FLHDPSKDIGFVG-CAL-ASTMVRFSKTQDGSWNHEVAISVKSLKVQNWILPEMPGLITDFLISLDDRFLYFSNWLHGDI 82 (222)
Q Consensus 5 ~afhP~g~~aYvv-~EL-sstV~~~~~d~~g~~~~~q~is~~p~~~~g~~~~~~~~~~adI~iSpDgrfLYvSnRgh~sI 82 (222)
..|+|+|++++.+ .+- ..+|+++... .|+.+ .+... .+ ....+..||||+.|+++....+.+
T Consensus 209 p~wSPDG~~la~~s~~~~~~~i~i~dl~-tg~~~---~l~~~----~g--------~~~~~~wSPDG~~La~~~~~~g~~ 272 (429)
T PRK01742 209 PAWSPDGSKLAYVSFENKKSQLVVHDLR-SGARK---VVASF----RG--------HNGAPAFSPDGSRLAFASSKDGVL 272 (429)
T ss_pred ceEcCCCCEEEEEEecCCCcEEEEEeCC-CCceE---EEecC----CC--------ccCceeECCCCCEEEEEEecCCcE
Confidence 6789999765444 332 2457666542 33321 12211 11 124689999999998876556666
Q ss_pred EEEEec
Q 027522 83 RQYNIE 88 (222)
Q Consensus 83 ~vf~i~ 88 (222)
.+|.++
T Consensus 273 ~Iy~~d 278 (429)
T PRK01742 273 NIYVMG 278 (429)
T ss_pred EEEEEE
Confidence 666663
No 35
>TIGR02800 propeller_TolB tol-pal system beta propeller repeat protein TolB. The Tol-PAL system is required for bacterial outer membrane integrity. E. coli TolB is involved in the tonB-independent uptake of group A colicins (colicins A, E1, E2, E3 and K), and is necessary for the colicins to reach their respective targets after initial binding to the bacteria. It is also involved in uptake of filamentous DNA. Study of its structure suggest that the TolB protein might be involved in the recycling of peptidoglycan or in its covalent linking with lipoproteins. The Tol-Pal system is also implicated in pathogenesis of E. coli, Haemophilus ducreyi, Salmonella enterica and Vibrio cholerae, but the mechanism(s) is unclear.
Probab=97.50 E-value=0.0034 Score=57.08 Aligned_cols=118 Identities=14% Similarity=0.104 Sum_probs=63.5
Q ss_pred EEEcCCCCeEEEEeccCce--EEEEEeCCCCCeeEEEEEEecCcccccccCCCCCCceeEEEEcCCCCEEE-EEeCCCCc
Q 027522 5 FLHDPSKDIGFVGCALAST--MVRFSKTQDGSWNHEVAISVKSLKVQNWILPEMPGLITDFLISLDDRFLY-FSNWLHGD 81 (222)
Q Consensus 5 ~afhP~g~~aYvv~ELsst--V~~~~~d~~g~~~~~q~is~~p~~~~g~~~~~~~~~~adI~iSpDgrfLY-vSnRgh~s 81 (222)
++|+|+|+.+|+....+.. |+.+..+ ++.. +.+... .+ .......||||++|+ +|+|+ +.
T Consensus 239 ~~~spDg~~l~~~~~~~~~~~i~~~d~~-~~~~---~~l~~~----~~--------~~~~~~~s~dg~~l~~~s~~~-g~ 301 (417)
T TIGR02800 239 PAFSPDGSKLAVSLSKDGNPDIYVMDLD-GKQL---TRLTNG----PG--------IDTEPSWSPDGKSIAFTSDRG-GS 301 (417)
T ss_pred eEECCCCCEEEEEECCCCCccEEEEECC-CCCE---EECCCC----CC--------CCCCEEECCCCCEEEEEECCC-CC
Confidence 5789999987766554443 5555442 3322 111111 11 113457899999875 56653 33
Q ss_pred EEEEEecCCCCCeEEEEEEecceeecCCceeeeeCCCCCCCCCCccccCcccCCCCeeEEECCCCCEEEEEeCCCCcccc
Q 027522 82 IRQYNIEDPKNPVLTGQIWVGGLFRKGSPVVAVTDDGQPYQSDVPEVQGHRLRGGPQMIQLSLDGKRLYVTNSLFSAWDC 161 (222)
Q Consensus 82 I~vf~i~d~~~~~L~~~v~~gG~~~~~~~~~~~~~~~~~~~p~~~~v~G~~~~ggPr~~~lspdGk~LyvaNsl~~~wd~ 161 (222)
..+|.++- ..++. .++... +.. .....+||||++|++++
T Consensus 302 ~~iy~~d~-~~~~~-~~l~~~---------------------------~~~----~~~~~~spdg~~i~~~~-------- 340 (417)
T TIGR02800 302 PQIYMMDA-DGGEV-RRLTFR---------------------------GGY----NASPSWSPDGDLIAFVH-------- 340 (417)
T ss_pred ceEEEEEC-CCCCE-EEeecC---------------------------CCC----ccCeEECCCCCEEEEEE--------
Confidence 34444421 12222 122221 122 44678999999999998
Q ss_pred ccccccccCCcEEEEEEeeCCCCCee
Q 027522 162 QFYPELKEKGSHMLQIDVNSEKGGMA 187 (222)
Q Consensus 162 Q~yp~~~s~~~~i~~~dvd~~~G~l~ 187 (222)
+. .....|+.+|+ .+|.++
T Consensus 341 ~~-----~~~~~i~~~d~--~~~~~~ 359 (417)
T TIGR02800 341 RE-----GGGFNIAVMDL--DGGGER 359 (417)
T ss_pred cc-----CCceEEEEEeC--CCCCeE
Confidence 32 23456777765 445554
No 36
>PRK04792 tolB translocation protein TolB; Provisional
Probab=97.46 E-value=0.0038 Score=59.23 Aligned_cols=67 Identities=12% Similarity=-0.021 Sum_probs=36.6
Q ss_pred EEEcCCCCeE-EEEeccC-ceEEEEEeCCCCCeeEEEEEEecCcccccccCCCCCCceeEEEEcCCCCEEEEEeCCCCc-
Q 027522 5 FLHDPSKDIG-FVGCALA-STMVRFSKTQDGSWNHEVAISVKSLKVQNWILPEMPGLITDFLISLDDRFLYFSNWLHGD- 81 (222)
Q Consensus 5 ~afhP~g~~a-Yvv~ELs-stV~~~~~d~~g~~~~~q~is~~p~~~~g~~~~~~~~~~adI~iSpDgrfLYvSnRgh~s- 81 (222)
..|+|||+++ |+..+-+ +.|+++..+ .|+. +.++.. .+ .......||||++|+++....+.
T Consensus 223 p~wSPDG~~La~~s~~~g~~~L~~~dl~-tg~~---~~lt~~----~g--------~~~~~~wSPDG~~La~~~~~~g~~ 286 (448)
T PRK04792 223 PAWSPDGRKLAYVSFENRKAEIFVQDIY-TQVR---EKVTSF----PG--------INGAPRFSPDGKKLALVLSKDGQP 286 (448)
T ss_pred ceECCCCCEEEEEEecCCCcEEEEEECC-CCCe---EEecCC----CC--------CcCCeeECCCCCEEEEEEeCCCCe
Confidence 5789999755 5544432 346666543 3332 122211 11 12357899999988765443444
Q ss_pred -EEEEEe
Q 027522 82 -IRQYNI 87 (222)
Q Consensus 82 -I~vf~i 87 (222)
|.++++
T Consensus 287 ~Iy~~dl 293 (448)
T PRK04792 287 EIYVVDI 293 (448)
T ss_pred EEEEEEC
Confidence 555544
No 37
>PRK04922 tolB translocation protein TolB; Provisional
Probab=97.44 E-value=0.0065 Score=56.90 Aligned_cols=69 Identities=12% Similarity=0.112 Sum_probs=42.1
Q ss_pred eEEEcCCCCeEEEEeccCce--EEEEEeCCCCCeeEEEEEEecCcccccccCCCCCCceeEEEEcCCCCEEEEEeCCCC-
Q 027522 4 RFLHDPSKDIGFVGCALAST--MVRFSKTQDGSWNHEVAISVKSLKVQNWILPEMPGLITDFLISLDDRFLYFSNWLHG- 80 (222)
Q Consensus 4 r~afhP~g~~aYvv~ELsst--V~~~~~d~~g~~~~~q~is~~p~~~~g~~~~~~~~~~adI~iSpDgrfLYvSnRgh~- 80 (222)
-+.|+|+|++++....-+.. |+++.. ..|+. +.++.. + .....+.+||||++||++++..+
T Consensus 296 ~~~~spDG~~l~f~sd~~g~~~iy~~dl-~~g~~---~~lt~~-----g-------~~~~~~~~SpDG~~Ia~~~~~~~~ 359 (433)
T PRK04922 296 EPTWAPDGKSIYFTSDRGGRPQIYRVAA-SGGSA---ERLTFQ-----G-------NYNARASVSPDGKKIAMVHGSGGQ 359 (433)
T ss_pred ceEECCCCCEEEEEECCCCCceEEEEEC-CCCCe---EEeecC-----C-------CCccCEEECCCCCEEEEEECCCCc
Confidence 46799999987776654444 555433 23432 222221 1 12246789999999998876433
Q ss_pred -cEEEEEec
Q 027522 81 -DIRQYNIE 88 (222)
Q Consensus 81 -sI~vf~i~ 88 (222)
.|.+|++.
T Consensus 360 ~~I~v~d~~ 368 (433)
T PRK04922 360 YRIAVMDLS 368 (433)
T ss_pred eeEEEEECC
Confidence 57777763
No 38
>PRK00178 tolB translocation protein TolB; Provisional
Probab=97.41 E-value=0.0076 Score=55.83 Aligned_cols=67 Identities=13% Similarity=0.052 Sum_probs=35.8
Q ss_pred EEEcCCCCeEEEEe-ccC-ceEEEEEeCCCCCeeEEEEEEecCcccccccCCCCCCceeEEEEcCCCCEEE-EEeCC-CC
Q 027522 5 FLHDPSKDIGFVGC-ALA-STMVRFSKTQDGSWNHEVAISVKSLKVQNWILPEMPGLITDFLISLDDRFLY-FSNWL-HG 80 (222)
Q Consensus 5 ~afhP~g~~aYvv~-ELs-stV~~~~~d~~g~~~~~q~is~~p~~~~g~~~~~~~~~~adI~iSpDgrfLY-vSnRg-h~ 80 (222)
+.|+|+|+++++.. .-+ ..|+++..+ .+... + ++-. . ...+....||||++|| +|+|. ..
T Consensus 248 ~~~SpDG~~la~~~~~~g~~~Iy~~d~~-~~~~~--~-lt~~----~--------~~~~~~~~spDg~~i~f~s~~~g~~ 311 (430)
T PRK00178 248 PAWSPDGSKLAFVLSKDGNPEIYVMDLA-SRQLS--R-VTNH----P--------AIDTEPFWGKDGRTLYFTSDRGGKP 311 (430)
T ss_pred eEECCCCCEEEEEEccCCCceEEEEECC-CCCeE--E-cccC----C--------CCcCCeEECCCCCEEEEEECCCCCc
Confidence 57999998766543 332 246666543 34332 1 1111 1 1124567899999876 45553 33
Q ss_pred cEEEEEe
Q 027522 81 DIRQYNI 87 (222)
Q Consensus 81 sI~vf~i 87 (222)
.|.++++
T Consensus 312 ~iy~~d~ 318 (430)
T PRK00178 312 QIYKVNV 318 (430)
T ss_pred eEEEEEC
Confidence 4544444
No 39
>PF07995 GSDH: Glucose / Sorbosone dehydrogenase; InterPro: IPR012938 Proteins containing this domain are thought to be glucose/sorbosone dehydrogenases. The best characterised of these proteins is soluble glucose dehydrogenase (P13650 from SWISSPROT) from Acinetobacter calcoaceticus, which oxidises glucose to gluconolactone. The enzyme is a calcium-dependent homodimer which uses PQQ as a cofactor [].; GO: 0016901 oxidoreductase activity, acting on the CH-OH group of donors, quinone or similar compound as acceptor, 0048038 quinone binding, 0005975 carbohydrate metabolic process; PDB: 2ISM_A 2WG3_D 3HO5_A 3HO4_A 3HO3_A 2WFT_A 2WG4_B 2WFX_B 1CRU_A 1CQ1_B ....
Probab=97.40 E-value=0.014 Score=53.44 Aligned_cols=141 Identities=15% Similarity=0.198 Sum_probs=74.2
Q ss_pred EeEEEcCCCCeEEEEeccCceEEEEEeCCCCCeeEEEEEEecCcccccccCCCCCCceeEEEEcCC---CCEEEEEeCC-
Q 027522 3 IRFLHDPSKDIGFVGCALASTMVRFSKTQDGSWNHEVAISVKSLKVQNWILPEMPGLITDFLISLD---DRFLYFSNWL- 78 (222)
Q Consensus 3 vr~afhP~g~~aYvv~ELsstV~~~~~d~~g~~~~~q~is~~p~~~~g~~~~~~~~~~adI~iSpD---grfLYvSnRg- 78 (222)
.-++|.|+|+. || .|...+|+++.. +|.. ...+..++.-...+. ...-.|.++|+ .++||++---
T Consensus 5 ~~~a~~pdG~l-~v-~e~~G~i~~~~~--~g~~-~~~v~~~~~v~~~~~------~gllgia~~p~f~~n~~lYv~~t~~ 73 (331)
T PF07995_consen 5 RSMAFLPDGRL-LV-AERSGRIWVVDK--DGSL-KTPVADLPEVFADGE------RGLLGIAFHPDFASNGYLYVYYTNA 73 (331)
T ss_dssp EEEEEETTSCE-EE-EETTTEEEEEET--TTEE-CEEEEE-TTTBTSTT------BSEEEEEE-TTCCCC-EEEEEEEEE
T ss_pred eEEEEeCCCcE-EE-EeCCceEEEEeC--CCcC-cceeccccccccccc------CCcccceeccccCCCCEEEEEEEcc
Confidence 35899999754 66 477999999983 4554 222333321111222 45689999995 7888876541
Q ss_pred -------CCcEEEEEecCCCCCeEEEEEEecceeecCCceeeeeCCCCCCCCCCccccCcccCCCCeeEEECCCCCEEEE
Q 027522 79 -------HGDIRQYNIEDPKNPVLTGQIWVGGLFRKGSPVVAVTDDGQPYQSDVPEVQGHRLRGGPQMIQLSLDGKRLYV 151 (222)
Q Consensus 79 -------h~sI~vf~i~d~~~~~L~~~v~~gG~~~~~~~~~~~~~~~~~~~p~~~~v~G~~~~ggPr~~~lspdGk~Lyv 151 (222)
...|..|..++. ...+.....+ +.+ .|.. ...... -+.|++.||| +|||
T Consensus 74 ~~~~~~~~~~v~r~~~~~~-~~~~~~~~~l-----------~~~------~p~~-~~~~H~----g~~l~fgpDG-~LYv 129 (331)
T PF07995_consen 74 DEDGGDNDNRVVRFTLSDG-DGDLSSEEVL-----------VTG------LPDT-SSGNHN----GGGLAFGPDG-KLYV 129 (331)
T ss_dssp -TSSSSEEEEEEEEEEETT-SCEEEEEEEE-----------EEE------EES--CSSSS-----EEEEEE-TTS-EEEE
T ss_pred cCCCCCcceeeEEEeccCC-ccccccceEE-----------EEE------eCCC-CCCCCC----CccccCCCCC-cEEE
Confidence 245777777542 2233211111 000 0110 011222 5679999999 8999
Q ss_pred EeCCCCccccccccccccCCcEEEEEEee
Q 027522 152 TNSLFSAWDCQFYPELKEKGSHMLQIDVN 180 (222)
Q Consensus 152 aNsl~~~wd~Q~yp~~~s~~~~i~~~dvd 180 (222)
+.. +..+.+.-.+..+....|+|++.|
T Consensus 130 s~G--~~~~~~~~~~~~~~~G~ilri~~d 156 (331)
T PF07995_consen 130 SVG--DGGNDDNAQDPNSLRGKILRIDPD 156 (331)
T ss_dssp EEB---TTTGGGGCSTTSSTTEEEEEETT
T ss_pred EeC--CCCCcccccccccccceEEEeccc
Confidence 864 233311111233456789998764
No 40
>PRK01029 tolB translocation protein TolB; Provisional
Probab=97.38 E-value=0.0057 Score=57.86 Aligned_cols=71 Identities=11% Similarity=0.008 Sum_probs=40.1
Q ss_pred eEEEcCCCCeEEEEeccCc--eEEEEEeCCCCCeeEEEEEEecCcccccccCCCCCCceeEEEEcCCCCEEEEEeC--CC
Q 027522 4 RFLHDPSKDIGFVGCALAS--TMVRFSKTQDGSWNHEVAISVKSLKVQNWILPEMPGLITDFLISLDDRFLYFSNW--LH 79 (222)
Q Consensus 4 r~afhP~g~~aYvv~ELss--tV~~~~~d~~g~~~~~q~is~~p~~~~g~~~~~~~~~~adI~iSpDgrfLYvSnR--gh 79 (222)
...|+|||++++.+..-+. .|+++..+..+. . .+.++.. . ...+....||||++|+.+.. +.
T Consensus 285 ~p~wSPDG~~Laf~s~~~g~~~ly~~~~~~~g~-~-~~~lt~~----~--------~~~~~p~wSPDG~~Laf~~~~~g~ 350 (428)
T PRK01029 285 NPSFSPDGTRLVFVSNKDGRPRIYIMQIDPEGQ-S-PRLLTKK----Y--------RNSSCPAWSPDGKKIAFCSVIKGV 350 (428)
T ss_pred CeEECCCCCEEEEEECCCCCceEEEEECccccc-c-eEEeccC----C--------CCccceeECCCCCEEEEEEcCCCC
Confidence 4689999986555543333 355554432221 1 1222211 0 12356789999998876654 33
Q ss_pred CcEEEEEec
Q 027522 80 GDIRQYNIE 88 (222)
Q Consensus 80 ~sI~vf~i~ 88 (222)
..|.+|+++
T Consensus 351 ~~I~v~dl~ 359 (428)
T PRK01029 351 RQICVYDLA 359 (428)
T ss_pred cEEEEEECC
Confidence 468888774
No 41
>PRK03629 tolB translocation protein TolB; Provisional
Probab=97.37 E-value=0.0046 Score=58.17 Aligned_cols=68 Identities=16% Similarity=0.107 Sum_probs=39.4
Q ss_pred eEEEcCCCCe-EEEEeccC-ceEEEEEeCCCCCeeEEEEEEecCcccccccCCCCCCceeEEEEcCCCCEEEEEeCCCC-
Q 027522 4 RFLHDPSKDI-GFVGCALA-STMVRFSKTQDGSWNHEVAISVKSLKVQNWILPEMPGLITDFLISLDDRFLYFSNWLHG- 80 (222)
Q Consensus 4 r~afhP~g~~-aYvv~ELs-stV~~~~~d~~g~~~~~q~is~~p~~~~g~~~~~~~~~~adI~iSpDgrfLYvSnRgh~- 80 (222)
-.+|+|||+. +|+..+-+ ..|+++..+ .|+. .+..+. . ....+..+||||+.|+++....+
T Consensus 203 ~p~wSPDG~~la~~s~~~g~~~i~i~dl~-~G~~--~~l~~~-----~--------~~~~~~~~SPDG~~La~~~~~~g~ 266 (429)
T PRK03629 203 SPAWSPDGSKLAYVTFESGRSALVIQTLA-NGAV--RQVASF-----P--------RHNGAPAFSPDGSKLAFALSKTGS 266 (429)
T ss_pred eeEEcCCCCEEEEEEecCCCcEEEEEECC-CCCe--EEccCC-----C--------CCcCCeEECCCCCEEEEEEcCCCC
Confidence 4789999865 45544432 346655543 3432 222111 1 12246789999999998755444
Q ss_pred -cEEEEEe
Q 027522 81 -DIRQYNI 87 (222)
Q Consensus 81 -sI~vf~i 87 (222)
.|.++++
T Consensus 267 ~~I~~~d~ 274 (429)
T PRK03629 267 LNLYVMDL 274 (429)
T ss_pred cEEEEEEC
Confidence 4777766
No 42
>KOG1446 consensus Histone H3 (Lys4) methyltransferase complex and RNA cleavage factor II complex, subunit SWD2 [RNA processing and modification; Chromatin structure and dynamics; Posttranslational modification, protein turnover, chaperones]
Probab=97.35 E-value=0.01 Score=54.94 Aligned_cols=119 Identities=16% Similarity=0.169 Sum_probs=78.3
Q ss_pred EEEcCCCCeEEEEeccCceEEEEEeC--CCCCeeEEEEEEecCcccccccCCCCCCceeEEEEcCCCCEEEEEeCCCCcE
Q 027522 5 FLHDPSKDIGFVGCALASTMVRFSKT--QDGSWNHEVAISVKSLKVQNWILPEMPGLITDFLISLDDRFLYFSNWLHGDI 82 (222)
Q Consensus 5 ~afhP~g~~aYvv~ELsstV~~~~~d--~~g~~~~~q~is~~p~~~~g~~~~~~~~~~adI~iSpDgrfLYvSnRgh~sI 82 (222)
.||+|+|=.+-++++-. .|-.|... ..|=+ +++.+.-.+...| ++|..|||||++-+|.. ++.|
T Consensus 146 ~AfDp~GLifA~~~~~~-~IkLyD~Rs~dkgPF---~tf~i~~~~~~ew---------~~l~FS~dGK~iLlsT~-~s~~ 211 (311)
T KOG1446|consen 146 AAFDPEGLIFALANGSE-LIKLYDLRSFDKGPF---TTFSITDNDEAEW---------TDLEFSPDGKSILLSTN-ASFI 211 (311)
T ss_pred eeECCCCcEEEEecCCC-eEEEEEecccCCCCc---eeEccCCCCccce---------eeeEEcCCCCEEEEEeC-CCcE
Confidence 48999999998888854 77777543 22323 3444442222334 99999999999999985 4555
Q ss_pred EEEEecCCCCCeEEEEEEecceeecCCceeeeeCCCCCCCCCCccccCcccCCCCeeEEECCCCCEEEEEeCCCCccccc
Q 027522 83 RQYNIEDPKNPVLTGQIWVGGLFRKGSPVVAVTDDGQPYQSDVPEVQGHRLRGGPQMIQLSLDGKRLYVTNSLFSAWDCQ 162 (222)
Q Consensus 83 ~vf~i~d~~~~~L~~~v~~gG~~~~~~~~~~~~~~~~~~~p~~~~v~G~~~~ggPr~~~lspdGk~LyvaNsl~~~wd~Q 162 (222)
-+. |..+|.+.+.+..- .-.|+- |=+.+++|||++++.+-
T Consensus 212 ~~l---DAf~G~~~~tfs~~------------------------~~~~~~----~~~a~ftPds~Fvl~gs--------- 251 (311)
T KOG1446|consen 212 YLL---DAFDGTVKSTFSGY------------------------PNAGNL----PLSATFTPDSKFVLSGS--------- 251 (311)
T ss_pred EEE---EccCCcEeeeEeec------------------------cCCCCc----ceeEEECCCCcEEEEec---------
Confidence 555 33456665554430 012444 77889999999999885
Q ss_pred cccccccCCcEEEEEEeeCCCCCe
Q 027522 163 FYPELKEKGSHMLQIDVNSEKGGM 186 (222)
Q Consensus 163 ~yp~~~s~~~~i~~~dvd~~~G~l 186 (222)
+.+++...++ ++|..
T Consensus 252 -------~dg~i~vw~~--~tg~~ 266 (311)
T KOG1446|consen 252 -------DDGTIHVWNL--ETGKK 266 (311)
T ss_pred -------CCCcEEEEEc--CCCcE
Confidence 4566666655 66654
No 43
>TIGR02604 Piru_Ver_Nterm putative membrane-bound dehydrogenase domain. All proteins that score above the trusted cutoff score of 45 to this model are large proteins of either Pirellula sp. 1 or Verrucomicrobium spinosum. These proteins all contain, in addition to this domain, several hundred residues of highly variable sequence, and then a well-conserved C-terminal domain (TIGR02603) that features a putative cytochrome c-type heme binding motif CXXCH. The membrane-bound L-sorbosone dehydrogenase from Acetobacter liquefaciens (Gluconacetobacter liquefaciens) is homologous to this domain but lacks additional sequence regions shared by members of this family and belongs to a different clade of the larger family of homologs. It and its closely related homologs are excluded from the this model by scoring between the trusted (45) and noise (18) cutoffs.
Probab=97.35 E-value=0.0071 Score=55.79 Aligned_cols=66 Identities=14% Similarity=0.273 Sum_probs=42.6
Q ss_pred eEEEcCCCCeEEEEe------------ccCceEEEEEe-CCCCCeeEEEEEEecCcccccccCCCCCCceeEEEEcCCCC
Q 027522 4 RFLHDPSKDIGFVGC------------ALASTMVRFSK-TQDGSWNHEVAISVKSLKVQNWILPEMPGLITDFLISLDDR 70 (222)
Q Consensus 4 r~afhP~g~~aYvv~------------ELsstV~~~~~-d~~g~~~~~q~is~~p~~~~g~~~~~~~~~~adI~iSpDgr 70 (222)
=++|.++|+ +||+. +.++.|.++.. +.+|......++. ++- ..+..|++.+||
T Consensus 18 ~ia~d~~G~-l~V~e~~~y~~~~~~~~~~~~rI~~l~d~dgdG~~d~~~vfa------~~l------~~p~Gi~~~~~G- 83 (367)
T TIGR02604 18 AVCFDERGR-LWVAEGITYSRPAGRQGPLGDRILILEDADGDGKYDKSNVFA------EEL------SMVTGLAVAVGG- 83 (367)
T ss_pred eeeECCCCC-EEEEeCCcCCCCCCCCCCCCCEEEEEEcCCCCCCcceeEEee------cCC------CCccceeEecCC-
Confidence 478899988 67774 34458999975 3456544333322 111 345789999999
Q ss_pred EEEEEeCCCCcEEEEE
Q 027522 71 FLYFSNWLHGDIRQYN 86 (222)
Q Consensus 71 fLYvSnRgh~sI~vf~ 86 (222)
|||+++. .|..|.
T Consensus 84 -lyV~~~~--~i~~~~ 96 (367)
T TIGR02604 84 -VYVATPP--DILFLR 96 (367)
T ss_pred -EEEeCCC--eEEEEe
Confidence 9999853 466563
No 44
>PRK01742 tolB translocation protein TolB; Provisional
Probab=97.35 E-value=0.0066 Score=56.90 Aligned_cols=71 Identities=13% Similarity=0.070 Sum_probs=41.8
Q ss_pred eEEEcCCCCeEEEEeccCceEEEEEeCC-CCCeeEEEEEEecCcccccccCCCCCCceeEEEEcCCCCEEEEEeCCCCcE
Q 027522 4 RFLHDPSKDIGFVGCALASTMVRFSKTQ-DGSWNHEVAISVKSLKVQNWILPEMPGLITDFLISLDDRFLYFSNWLHGDI 82 (222)
Q Consensus 4 r~afhP~g~~aYvv~ELsstV~~~~~d~-~g~~~~~q~is~~p~~~~g~~~~~~~~~~adI~iSpDgrfLYvSnRgh~sI 82 (222)
..+|+|||+.+++...-+..+-.|.++. .+.. ..++-. . ........||||++|+++....+..
T Consensus 252 ~~~wSPDG~~La~~~~~~g~~~Iy~~d~~~~~~---~~lt~~------~------~~~~~~~wSpDG~~i~f~s~~~g~~ 316 (429)
T PRK01742 252 APAFSPDGSRLAFASSKDGVLNIYVMGANGGTP---SQLTSG------A------GNNTEPSWSPDGQSILFTSDRSGSP 316 (429)
T ss_pred ceeECCCCCEEEEEEecCCcEEEEEEECCCCCe---EeeccC------C------CCcCCEEECCCCCEEEEEECCCCCc
Confidence 3679999998777654455444443432 2332 122111 1 2236788999999877554445667
Q ss_pred EEEEecC
Q 027522 83 RQYNIED 89 (222)
Q Consensus 83 ~vf~i~d 89 (222)
.+|.++.
T Consensus 317 ~I~~~~~ 323 (429)
T PRK01742 317 QVYRMSA 323 (429)
T ss_pred eEEEEEC
Confidence 8888743
No 45
>TIGR02800 propeller_TolB tol-pal system beta propeller repeat protein TolB. The Tol-PAL system is required for bacterial outer membrane integrity. E. coli TolB is involved in the tonB-independent uptake of group A colicins (colicins A, E1, E2, E3 and K), and is necessary for the colicins to reach their respective targets after initial binding to the bacteria. It is also involved in uptake of filamentous DNA. Study of its structure suggest that the TolB protein might be involved in the recycling of peptidoglycan or in its covalent linking with lipoproteins. The Tol-Pal system is also implicated in pathogenesis of E. coli, Haemophilus ducreyi, Salmonella enterica and Vibrio cholerae, but the mechanism(s) is unclear.
Probab=97.31 E-value=0.0073 Score=54.96 Aligned_cols=68 Identities=13% Similarity=-0.017 Sum_probs=39.0
Q ss_pred eEEEcCCCCeEEEEeccC--ceEEEEEeCCCCCeeEEEEEEecCcccccccCCCCCCceeEEEEcCCCCEEEEEeCCCC-
Q 027522 4 RFLHDPSKDIGFVGCALA--STMVRFSKTQDGSWNHEVAISVKSLKVQNWILPEMPGLITDFLISLDDRFLYFSNWLHG- 80 (222)
Q Consensus 4 r~afhP~g~~aYvv~ELs--stV~~~~~d~~g~~~~~q~is~~p~~~~g~~~~~~~~~~adI~iSpDgrfLYvSnRgh~- 80 (222)
...|+|+|++++.+..-+ .+|+++... +|+.. .+... .+ ....+.+||||+.||++....+
T Consensus 194 ~p~~Spdg~~la~~~~~~~~~~i~v~d~~-~g~~~---~~~~~----~~--------~~~~~~~spDg~~l~~~~~~~~~ 257 (417)
T TIGR02800 194 SPAWSPDGQKLAYVSFESGKPEIYVQDLA-TGQRE---KVASF----PG--------MNGAPAFSPDGSKLAVSLSKDGN 257 (417)
T ss_pred cccCCCCCCEEEEEEcCCCCcEEEEEECC-CCCEE---EeecC----CC--------CccceEECCCCCEEEEEECCCCC
Confidence 457899998776665433 456666542 34332 11111 11 1244789999998877654444
Q ss_pred -cEEEEEe
Q 027522 81 -DIRQYNI 87 (222)
Q Consensus 81 -sI~vf~i 87 (222)
.|..+++
T Consensus 258 ~~i~~~d~ 265 (417)
T TIGR02800 258 PDIYVMDL 265 (417)
T ss_pred ccEEEEEC
Confidence 4655555
No 46
>PRK05137 tolB translocation protein TolB; Provisional
Probab=97.31 E-value=0.0064 Score=56.91 Aligned_cols=67 Identities=12% Similarity=0.015 Sum_probs=39.0
Q ss_pred EEEcCCCCeEEEEeccC--ceEEEEEeCCCCCeeEEEEEEecCcccccccCCCCCCceeEEEEcCCCCEEEEEeCCCC--
Q 027522 5 FLHDPSKDIGFVGCALA--STMVRFSKTQDGSWNHEVAISVKSLKVQNWILPEMPGLITDFLISLDDRFLYFSNWLHG-- 80 (222)
Q Consensus 5 ~afhP~g~~aYvv~ELs--stV~~~~~d~~g~~~~~q~is~~p~~~~g~~~~~~~~~~adI~iSpDgrfLYvSnRgh~-- 80 (222)
..|+|+|++++....-+ ..|+++..+ .+.. +.++.. . ...+....||||++|+++.+..+
T Consensus 295 ~~~spDG~~i~f~s~~~g~~~Iy~~d~~-g~~~---~~lt~~----~--------~~~~~~~~SpdG~~ia~~~~~~~~~ 358 (435)
T PRK05137 295 PSYSPDGSQIVFESDRSGSPQLYVMNAD-GSNP---RRISFG----G--------GRYSTPVWSPRGDLIAFTKQGGGQF 358 (435)
T ss_pred eeEcCCCCEEEEEECCCCCCeEEEEECC-CCCe---EEeecC----C--------CcccCeEECCCCCEEEEEEcCCCce
Confidence 57899998776655322 346665532 2222 222221 1 11245779999999988776544
Q ss_pred cEEEEEe
Q 027522 81 DIRQYNI 87 (222)
Q Consensus 81 sI~vf~i 87 (222)
.|.+++.
T Consensus 359 ~i~~~d~ 365 (435)
T PRK05137 359 SIGVMKP 365 (435)
T ss_pred EEEEEEC
Confidence 4555554
No 47
>COG3490 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=97.26 E-value=0.0026 Score=59.17 Aligned_cols=104 Identities=22% Similarity=0.284 Sum_probs=65.8
Q ss_pred EEEcCCCCeEEEEeccCceEE-EEEeCCCCCeeEEEEEEecCcccccccCCCCCCceeEEEEcCCCCEEEEEeCC----C
Q 027522 5 FLHDPSKDIGFVGCALASTMV-RFSKTQDGSWNHEVAISVKSLKVQNWILPEMPGLITDFLISLDDRFLYFSNWL----H 79 (222)
Q Consensus 5 ~afhP~g~~aYvv~ELsstV~-~~~~d~~g~~~~~q~is~~p~~~~g~~~~~~~~~~adI~iSpDgrfLYvSnRg----h 79 (222)
++|||.-+++-+..---.|-. +|.+ ++.-+.....+...+.|=| .=..|||||+||++--. -
T Consensus 73 i~~~p~~~ravafARrPGtf~~vfD~--~~~~~pv~~~s~~~RHfyG-----------HGvfs~dG~~LYATEndfd~~r 139 (366)
T COG3490 73 IAFHPALPRAVAFARRPGTFAMVFDP--NGAQEPVTLVSQEGRHFYG-----------HGVFSPDGRLLYATENDFDPNR 139 (366)
T ss_pred eecCCCCcceEEEEecCCceEEEECC--CCCcCcEEEecccCceeec-----------ccccCCCCcEEEeecCCCCCCC
Confidence 467887777666655555533 3333 2322222222333333322 33689999999998653 4
Q ss_pred CcEEEEEecCCCCCeEEEEEEecceeecCCceeeeeCCCCCCCCCCccccCcccCCCCeeEEECCCCCEEEEEeC
Q 027522 80 GDIRQYNIEDPKNPVLTGQIWVGGLFRKGSPVVAVTDDGQPYQSDVPEVQGHRLRGGPQMIQLSLDGKRLYVTNS 154 (222)
Q Consensus 80 ~sI~vf~i~d~~~~~L~~~v~~gG~~~~~~~~~~~~~~~~~~~p~~~~v~G~~~~ggPr~~~lspdGk~LyvaNs 154 (222)
|-|-+||.. .+-.-++++++-| - ||-.|.|.+||+.|.|||-
T Consensus 140 GViGvYd~r--~~fqrvgE~~t~G---------------------------i----GpHev~lm~DGrtlvvanG 181 (366)
T COG3490 140 GVIGVYDAR--EGFQRVGEFSTHG---------------------------I----GPHEVTLMADGRTLVVANG 181 (366)
T ss_pred ceEEEEecc--cccceecccccCC---------------------------c----CcceeEEecCCcEEEEeCC
Confidence 679999884 2344456656543 3 3889999999999999993
No 48
>PRK05137 tolB translocation protein TolB; Provisional
Probab=97.26 E-value=0.0078 Score=56.34 Aligned_cols=68 Identities=15% Similarity=0.099 Sum_probs=38.0
Q ss_pred eEEEcCCCCe-EEEEecc-CceEEEEEeCCCCCeeEEEEEEecCcccccccCCCCCCceeEEEEcCCCCEEEEEeCCC--
Q 027522 4 RFLHDPSKDI-GFVGCAL-ASTMVRFSKTQDGSWNHEVAISVKSLKVQNWILPEMPGLITDFLISLDDRFLYFSNWLH-- 79 (222)
Q Consensus 4 r~afhP~g~~-aYvv~EL-sstV~~~~~d~~g~~~~~q~is~~p~~~~g~~~~~~~~~~adI~iSpDgrfLYvSnRgh-- 79 (222)
-..|+|||+. +|+-.+- ..+|+++..+ .|.. +.++-. . .......+||||+.|+++....
T Consensus 206 ~p~wSpDG~~lay~s~~~g~~~i~~~dl~-~g~~---~~l~~~----~--------g~~~~~~~SPDG~~la~~~~~~g~ 269 (435)
T PRK05137 206 TPRFSPNRQEITYMSYANGRPRVYLLDLE-TGQR---ELVGNF----P--------GMTFAPRFSPDGRKVVMSLSQGGN 269 (435)
T ss_pred eeEECCCCCEEEEEEecCCCCEEEEEECC-CCcE---EEeecC----C--------CcccCcEECCCCCEEEEEEecCCC
Confidence 4678999975 4554332 3567776653 3432 222211 1 1234678999999886554333
Q ss_pred CcEEEEEe
Q 027522 80 GDIRQYNI 87 (222)
Q Consensus 80 ~sI~vf~i 87 (222)
..|.++++
T Consensus 270 ~~Iy~~d~ 277 (435)
T PRK05137 270 TDIYTMDL 277 (435)
T ss_pred ceEEEEEC
Confidence 34655555
No 49
>COG3386 Gluconolactonase [Carbohydrate transport and metabolism]
Probab=97.18 E-value=0.011 Score=54.49 Aligned_cols=105 Identities=20% Similarity=0.346 Sum_probs=72.8
Q ss_pred EEEcCCCCeEEEEeccCceEEEEEeC-CCCCeeEEE-EEEecCcccccccCCCCCCceeEEEEcCCCCEEEEEeCCCCcE
Q 027522 5 FLHDPSKDIGFVGCALASTMVRFSKT-QDGSWNHEV-AISVKSLKVQNWILPEMPGLITDFLISLDDRFLYFSNWLHGDI 82 (222)
Q Consensus 5 ~afhP~g~~aYvv~ELsstV~~~~~d-~~g~~~~~q-~is~~p~~~~g~~~~~~~~~~adI~iSpDgrfLYvSnRgh~sI 82 (222)
++|+||++.+|+.-=..+.|+++.++ .+|...... .+.... -+..+=-+.+..||.+-.++.|+-+.|
T Consensus 168 la~SpDg~tly~aDT~~~~i~r~~~d~~~g~~~~~~~~~~~~~----------~~G~PDG~~vDadG~lw~~a~~~g~~v 237 (307)
T COG3386 168 LAFSPDGKTLYVADTPANRIHRYDLDPATGPIGGRRGFVDFDE----------EPGLPDGMAVDADGNLWVAAVWGGGRV 237 (307)
T ss_pred eEECCCCCEEEEEeCCCCeEEEEecCcccCccCCcceEEEccC----------CCCCCCceEEeCCCCEEEecccCCceE
Confidence 68999999999999999999999886 334332221 122211 013445688999998777777766789
Q ss_pred EEEEecCCCCCeEEEEEEecceeecCCceeeeeCCCCCCCCCCccccCcccCCCCeeEEE-CCCCCEEEEEeC
Q 027522 83 RQYNIEDPKNPVLTGQIWVGGLFRKGSPVVAVTDDGQPYQSDVPEVQGHRLRGGPQMIQL-SLDGKRLYVTNS 154 (222)
Q Consensus 83 ~vf~i~d~~~~~L~~~v~~gG~~~~~~~~~~~~~~~~~~~p~~~~v~G~~~~ggPr~~~l-spdGk~LyvaNs 154 (222)
.+| +|+ +++++++.+-- ++ |-+.++ .|+++.|||+++
T Consensus 238 ~~~---~pd-G~l~~~i~lP~---------------------------~~----~t~~~FgG~~~~~L~iTs~ 275 (307)
T COG3386 238 VRF---NPD-GKLLGEIKLPV---------------------------KR----PTNPAFGGPDLNTLYITSA 275 (307)
T ss_pred EEE---CCC-CcEEEEEECCC---------------------------CC----CccceEeCCCcCEEEEEec
Confidence 999 555 88888887610 11 445555 667899999984
No 50
>COG3386 Gluconolactonase [Carbohydrate transport and metabolism]
Probab=97.18 E-value=0.0029 Score=58.18 Aligned_cols=50 Identities=34% Similarity=0.617 Sum_probs=37.5
Q ss_pred CeeEEECCCCCEEEEEeCCCCccccccccccccCCcEEEEEEeeCCCCCeeeccceeEecC---CCCCC
Q 027522 137 PQMIQLSLDGKRLYVTNSLFSAWDCQFYPELKEKGSHMLQIDVNSEKGGMAINPNFFVDFE---AEPDG 202 (222)
Q Consensus 137 Pr~~~lspdGk~LyvaNsl~~~wd~Q~yp~~~s~~~~i~~~dvd~~~G~l~~~~~f~vdf~---~~~~g 202 (222)
|+-+++|||||.||+|- +....+.+++.|..+|.. -+..-.++|. +.|||
T Consensus 165 ~NGla~SpDg~tly~aD---------------T~~~~i~r~~~d~~~g~~-~~~~~~~~~~~~~G~PDG 217 (307)
T COG3386 165 PNGLAFSPDGKTLYVAD---------------TPANRIHRYDLDPATGPI-GGRRGFVDFDEEPGLPDG 217 (307)
T ss_pred cCceEECCCCCEEEEEe---------------CCCCeEEEEecCcccCcc-CCcceEEEccCCCCCCCc
Confidence 99999999999999998 567888888888766654 3334456664 44555
No 51
>cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto
Probab=97.18 E-value=0.017 Score=46.01 Aligned_cols=99 Identities=15% Similarity=0.144 Sum_probs=65.6
Q ss_pred eEEEcCCCCeEEEEeccCceEEEEEeCCCCCeeEEEEEEecCcccccccCCCCCCceeEEEEcCCCCEEEEEeCCCCcEE
Q 027522 4 RFLHDPSKDIGFVGCALASTMVRFSKTQDGSWNHEVAISVKSLKVQNWILPEMPGLITDFLISLDDRFLYFSNWLHGDIR 83 (222)
Q Consensus 4 r~afhP~g~~aYvv~ELsstV~~~~~d~~g~~~~~q~is~~p~~~~g~~~~~~~~~~adI~iSpDgrfLYvSnRgh~sI~ 83 (222)
.+.|+|+++.+++.+. ++.|.+|.... ++ ..+.+... ......+.+++|+++++++. ..+.|.
T Consensus 182 ~~~~~~~~~~l~~~~~-~~~i~i~d~~~-~~--~~~~~~~~------------~~~i~~~~~~~~~~~~~~~~-~~~~i~ 244 (289)
T cd00200 182 SVAFSPDGEKLLSSSS-DGTIKLWDLST-GK--CLGTLRGH------------ENGVNSVAFSPDGYLLASGS-EDGTIR 244 (289)
T ss_pred eEEECCCcCEEEEecC-CCcEEEEECCC-Cc--eecchhhc------------CCceEEEEEcCCCcEEEEEc-CCCcEE
Confidence 4789999988888887 88888887642 21 11111110 13468899999977776665 578999
Q ss_pred EEEecCCCCCeEEEEEEecceeecCCceeeeeCCCCCCCCCCccccCcccCCCCeeEEECCCCCEEEEEe
Q 027522 84 QYNIEDPKNPVLTGQIWVGGLFRKGSPVVAVTDDGQPYQSDVPEVQGHRLRGGPQMIQLSLDGKRLYVTN 153 (222)
Q Consensus 84 vf~i~d~~~~~L~~~v~~gG~~~~~~~~~~~~~~~~~~~p~~~~v~G~~~~ggPr~~~lspdGk~LyvaN 153 (222)
+|++.. .+....+.. . .. ....++++++|++|+++.
T Consensus 245 i~~~~~---~~~~~~~~~--~-------------------------~~----~i~~~~~~~~~~~l~~~~ 280 (289)
T cd00200 245 VWDLRT---GECVQTLSG--H-------------------------TN----SVTSLAWSPDGKRLASGS 280 (289)
T ss_pred EEEcCC---ceeEEEccc--c-------------------------CC----cEEEEEECCCCCEEEEec
Confidence 999843 333322221 0 11 267899999999999887
No 52
>PF06433 Me-amine-dh_H: Methylamine dehydrogenase heavy chain (MADH); InterPro: IPR009451 Methylamine dehydrogenase (1.4.99.3 from EC) is a periplasmic quinoprotein found in several methyltrophic bacteria []. It is induced when grown on methylamine as a carbon source MADH and catalyses the oxidative deamination of amines to their corresponding aldehydes. The redox cofactor of this enzyme is tryptophan tryptophylquinone (TTQ). Electrons derived from the oxidation of methylamine are passed to an electron acceptor, which is usually the blue-copper protein amicyanin (IPR002386 from INTERPRO). RCH2NH2 + H2O + acceptor = RCHO + NH3 + reduced acceptor MADH is a hetero-tetramer, comprised of two heavy subunits and two light subunits. The heavy subunit forms a seven-bladed beta-propeller like structure [].; GO: 0030058 amine dehydrogenase activity, 0030416 methylamine metabolic process, 0055114 oxidation-reduction process, 0042597 periplasmic space; PDB: 3RN1_F 3SVW_F 3PXT_F 3L4O_F 3L4M_D 3SJL_F 3PXS_D 3ORV_F 3RMZ_F 3RLM_F ....
Probab=97.15 E-value=0.0062 Score=57.18 Aligned_cols=87 Identities=17% Similarity=0.242 Sum_probs=59.9
Q ss_pred EEEcCCCCeEEEEeccCc---------eEEEEEeCCCCCeeEEEEEEecCc-ccccccCCCCCCceeEEEEcCCCCEEEE
Q 027522 5 FLHDPSKDIGFVGCALAS---------TMVRFSKTQDGSWNHEVAISVKSL-KVQNWILPEMPGLITDFLISLDDRFLYF 74 (222)
Q Consensus 5 ~afhP~g~~aYvv~ELss---------tV~~~~~d~~g~~~~~q~is~~p~-~~~g~~~~~~~~~~adI~iSpDgrfLYv 74 (222)
++.+|+++..|+.+=.=+ -|.+| | .-+++.+.-|.+|++ -+.-- .....+.+|.|||||||
T Consensus 41 ~~~spdgk~~y~a~T~~sR~~rG~RtDvv~~~--D-~~TL~~~~EI~iP~k~R~~~~------~~~~~~~ls~dgk~~~V 111 (342)
T PF06433_consen 41 VALSPDGKTIYVAETFYSRGTRGERTDVVEIW--D-TQTLSPTGEIEIPPKPRAQVV------PYKNMFALSADGKFLYV 111 (342)
T ss_dssp EEE-TTSSEEEEEEEEEEETTEEEEEEEEEEE--E-TTTTEEEEEEEETTS-B--BS--------GGGEEE-TTSSEEEE
T ss_pred eeECCCCCEEEEEEEEEeccccccceeEEEEE--e-cCcCcccceEecCCcchheec------ccccceEEccCCcEEEE
Confidence 678999999999764222 13333 2 236888888999976 33211 34567899999999999
Q ss_pred EeCC-CCcEEEEEecCCCCCeEEEEEEecc
Q 027522 75 SNWL-HGDIRQYNIEDPKNPVLTGQIWVGG 103 (222)
Q Consensus 75 SnRg-h~sI~vf~i~d~~~~~L~~~v~~gG 103 (222)
.|-- .-||.|.|+.. .+.++.|.+-|
T Consensus 112 ~N~TPa~SVtVVDl~~---~kvv~ei~~PG 138 (342)
T PF06433_consen 112 QNFTPATSVTVVDLAA---KKVVGEIDTPG 138 (342)
T ss_dssp EEESSSEEEEEEETTT---TEEEEEEEGTS
T ss_pred EccCCCCeEEEEECCC---CceeeeecCCC
Confidence 9996 47899998843 77888888865
No 53
>cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto
Probab=97.10 E-value=0.052 Score=43.26 Aligned_cols=69 Identities=17% Similarity=0.238 Sum_probs=48.9
Q ss_pred eEEEcCCCCeEEEEeccCceEEEEEeCCCCCeeEEEEEEecCcccccccCCCCCCceeEEEEcCCCCEEEEEeCCCCcEE
Q 027522 4 RFLHDPSKDIGFVGCALASTMVRFSKTQDGSWNHEVAISVKSLKVQNWILPEMPGLITDFLISLDDRFLYFSNWLHGDIR 83 (222)
Q Consensus 4 r~afhP~g~~aYvv~ELsstV~~~~~d~~g~~~~~q~is~~p~~~~g~~~~~~~~~~adI~iSpDgrfLYvSnRgh~sI~ 83 (222)
.+.|+|+++++++..+ +++|.+|..+. ++ ..+..... . .....+..++++++|+++.. .+.|.
T Consensus 14 ~~~~~~~~~~l~~~~~-~g~i~i~~~~~-~~--~~~~~~~~----~--------~~i~~~~~~~~~~~l~~~~~-~~~i~ 76 (289)
T cd00200 14 CVAFSPDGKLLATGSG-DGTIKVWDLET-GE--LLRTLKGH----T--------GPVRDVAASADGTYLASGSS-DKTIR 76 (289)
T ss_pred EEEEcCCCCEEEEeec-CcEEEEEEeeC-CC--cEEEEecC----C--------cceeEEEECCCCCEEEEEcC-CCeEE
Confidence 4689999999998887 78888887752 22 11111111 0 22368999999999988775 78999
Q ss_pred EEEecC
Q 027522 84 QYNIED 89 (222)
Q Consensus 84 vf~i~d 89 (222)
+|++..
T Consensus 77 i~~~~~ 82 (289)
T cd00200 77 LWDLET 82 (289)
T ss_pred EEEcCc
Confidence 999954
No 54
>PF08662 eIF2A: Eukaryotic translation initiation factor eIF2A; InterPro: IPR013979 This entry contains beta propellor domains found in eukaryotic translation initiation factors and TolB domain-containing proteins.
Probab=97.06 E-value=0.045 Score=46.43 Aligned_cols=102 Identities=17% Similarity=0.157 Sum_probs=61.9
Q ss_pred eEeEEEcCCCCeEEEEeccC---------ceEEEEEeCCCCCeeEEEEEEecCcccccccCCCCCCceeEEEEcCCCCEE
Q 027522 2 QIRFLHDPSKDIGFVGCALA---------STMVRFSKTQDGSWNHEVAISVKSLKVQNWILPEMPGLITDFLISLDDRFL 72 (222)
Q Consensus 2 evr~afhP~g~~aYvv~ELs---------stV~~~~~d~~g~~~~~q~is~~p~~~~g~~~~~~~~~~adI~iSpDgrfL 72 (222)
++.|.+||+|.++-|...-. ++...|..+..+ .....+.+.. + +.+.++.-||+|+.+
T Consensus 8 ~~~~~W~~~G~~l~~~~~~~~~~~~ks~~~~~~l~~~~~~~--~~~~~i~l~~---~--------~~I~~~~WsP~g~~f 74 (194)
T PF08662_consen 8 DAKLHWQPSGDYLLVKVQTRVDKSGKSYYGEFELFYLNEKN--IPVESIELKK---E--------GPIHDVAWSPNGNEF 74 (194)
T ss_pred eEEEEecccCCEEEEEEEEeeccCcceEEeeEEEEEEecCC--CccceeeccC---C--------CceEEEEECcCCCEE
Confidence 68899999999988877711 112222222111 1112222211 1 236899999999887
Q ss_pred EEEe-CCCCcEEEEEecCCCCCeEEEEEEecceeecCCceeeeeCCCCCCCCCCccccCcccCCCCeeEEECCCCCEEEE
Q 027522 73 YFSN-WLHGDIRQYNIEDPKNPVLTGQIWVGGLFRKGSPVVAVTDDGQPYQSDVPEVQGHRLRGGPQMIQLSLDGKRLYV 151 (222)
Q Consensus 73 YvSn-Rgh~sI~vf~i~d~~~~~L~~~v~~gG~~~~~~~~~~~~~~~~~~~p~~~~v~G~~~~ggPr~~~lspdGk~Lyv 151 (222)
.|.. .....|..|++. .+.+.++.. .. .+.+..||+|++|.+
T Consensus 75 avi~g~~~~~v~lyd~~----~~~i~~~~~-----------------------------~~----~n~i~wsP~G~~l~~ 117 (194)
T PF08662_consen 75 AVIYGSMPAKVTLYDVK----GKKIFSFGT-----------------------------QP----RNTISWSPDGRFLVL 117 (194)
T ss_pred EEEEccCCcccEEEcCc----ccEeEeecC-----------------------------CC----ceEEEECCCCCEEEE
Confidence 6653 345689999883 333222211 11 457899999999999
Q ss_pred Ee
Q 027522 152 TN 153 (222)
Q Consensus 152 aN 153 (222)
|.
T Consensus 118 ~g 119 (194)
T PF08662_consen 118 AG 119 (194)
T ss_pred EE
Confidence 85
No 55
>PRK04043 tolB translocation protein TolB; Provisional
Probab=97.04 E-value=0.058 Score=51.19 Aligned_cols=69 Identities=17% Similarity=0.108 Sum_probs=39.4
Q ss_pred EeEEEcCCCCe-EE-EEecc-CceEEEEEeCCCCCeeEEEEEEecCcccccccCCCCCCceeEEEEcCCCCEEEEEeC--
Q 027522 3 IRFLHDPSKDI-GF-VGCAL-ASTMVRFSKTQDGSWNHEVAISVKSLKVQNWILPEMPGLITDFLISLDDRFLYFSNW-- 77 (222)
Q Consensus 3 vr~afhP~g~~-aY-vv~EL-sstV~~~~~d~~g~~~~~q~is~~p~~~~g~~~~~~~~~~adI~iSpDgrfLYvSnR-- 77 (222)
+-..|+|+|++ +| +.++- ...|+++... .|+- .+... . .| ....-.+||||+.|.++-.
T Consensus 191 ~~p~wSpDG~~~i~y~s~~~~~~~Iyv~dl~-tg~~--~~lt~-~----~g--------~~~~~~~SPDG~~la~~~~~~ 254 (419)
T PRK04043 191 IFPKWANKEQTAFYYTSYGERKPTLYKYNLY-TGKK--EKIAS-S----QG--------MLVVSDVSKDGSKLLLTMAPK 254 (419)
T ss_pred EeEEECCCCCcEEEEEEccCCCCEEEEEECC-CCcE--EEEec-C----CC--------cEEeeEECCCCCEEEEEEccC
Confidence 34679999984 44 56663 5678887653 3432 22222 1 22 1233458999998865433
Q ss_pred CCCcEEEEEe
Q 027522 78 LHGDIRQYNI 87 (222)
Q Consensus 78 gh~sI~vf~i 87 (222)
+...|.++++
T Consensus 255 g~~~Iy~~dl 264 (419)
T PRK04043 255 GQPDIYLYDT 264 (419)
T ss_pred CCcEEEEEEC
Confidence 2345666665
No 56
>KOG0266 consensus WD40 repeat-containing protein [General function prediction only]
Probab=96.89 E-value=0.015 Score=55.33 Aligned_cols=111 Identities=18% Similarity=0.229 Sum_probs=70.6
Q ss_pred EEEcCCCCeEEEEeccCceEEEEEeCCCCCeeEEEEEEecCcccccccCCCCCCceeEEEEcCCCCEEEEEeCCCCcEEE
Q 027522 5 FLHDPSKDIGFVGCALASTMVRFSKTQDGSWNHEVAISVKSLKVQNWILPEMPGLITDFLISLDDRFLYFSNWLHGDIRQ 84 (222)
Q Consensus 5 ~afhP~g~~aYvv~ELsstV~~~~~d~~g~~~~~q~is~~p~~~~g~~~~~~~~~~adI~iSpDgrfLYvSnRgh~sI~v 84 (222)
++|+|+| ...+-+=.+.+|.+|... +| +...++..-. ...+.|.+++||++|.++.. .+.|++
T Consensus 252 ~~f~p~g-~~i~Sgs~D~tvriWd~~-~~--~~~~~l~~hs------------~~is~~~f~~d~~~l~s~s~-d~~i~v 314 (456)
T KOG0266|consen 252 VAFSPDG-NLLVSGSDDGTVRIWDVR-TG--ECVRKLKGHS------------DGISGLAFSPDGNLLVSASY-DGTIRV 314 (456)
T ss_pred EEecCCC-CEEEEecCCCcEEEEecc-CC--eEEEeeeccC------------CceEEEEECCCCCEEEEcCC-CccEEE
Confidence 5799999 555666678999988764 23 2223332211 23589999999999999976 899999
Q ss_pred EEecCCCCCeEEEEEEecceeecCCceeeeeCCCCCCCCCCccccCcccCCCCeeEEECCCCCEEEEEe--CCCCccccc
Q 027522 85 YNIEDPKNPVLTGQIWVGGLFRKGSPVVAVTDDGQPYQSDVPEVQGHRLRGGPQMIQLSLDGKRLYVTN--SLFSAWDCQ 162 (222)
Q Consensus 85 f~i~d~~~~~L~~~v~~gG~~~~~~~~~~~~~~~~~~~p~~~~v~G~~~~ggPr~~~lspdGk~LyvaN--sl~~~wd~Q 162 (222)
|++.. +.-.++..+.- ..... --+.++++|+|++|+++. +..+.||-+
T Consensus 315 wd~~~-~~~~~~~~~~~----------------------------~~~~~-~~~~~~fsp~~~~ll~~~~d~~~~~w~l~ 364 (456)
T KOG0266|consen 315 WDLET-GSKLCLKLLSG----------------------------AENSA-PVTSVQFSPNGKYLLSASLDRTLKLWDLR 364 (456)
T ss_pred EECCC-CceeeeecccC----------------------------CCCCC-ceeEEEECCCCcEEEEecCCCeEEEEEcc
Confidence 99843 21101111110 12200 027899999999999884 455556554
No 57
>KOG1539 consensus WD repeat protein [General function prediction only]
Probab=96.75 E-value=0.0092 Score=61.31 Aligned_cols=62 Identities=23% Similarity=0.322 Sum_probs=50.3
Q ss_pred CCCceeEEEEcCCCCEEEEEeCCCCcEEEEEecCCCCCeEEEEEEecceeecCCceeeeeCCCCCCCCCCccccCcccCC
Q 027522 56 MPGLITDFLISLDDRFLYFSNWLHGDIRQYNIEDPKNPVLTGQIWVGGLFRKGSPVVAVTDDGQPYQSDVPEVQGHRLRG 135 (222)
Q Consensus 56 ~~~~~adI~iSpDgrfLYvSnRgh~sI~vf~i~d~~~~~L~~~v~~gG~~~~~~~~~~~~~~~~~~~p~~~~v~G~~~~g 135 (222)
+.+..+|+.+|||||||-.++ .+.+|++|||- ++.|+.-+.+- ..
T Consensus 575 h~nritd~~FS~DgrWlisas-mD~tIr~wDlp---t~~lID~~~vd----------------------------~~--- 619 (910)
T KOG1539|consen 575 HGNRITDMTFSPDGRWLISAS-MDSTIRTWDLP---TGTLIDGLLVD----------------------------SP--- 619 (910)
T ss_pred cccceeeeEeCCCCcEEEEee-cCCcEEEEecc---CcceeeeEecC----------------------------Cc---
Confidence 448899999999999997776 68899999993 36787666651 11
Q ss_pred CCeeEEECCCCCEEEEEe
Q 027522 136 GPQMIQLSLDGKRLYVTN 153 (222)
Q Consensus 136 gPr~~~lspdGk~LyvaN 153 (222)
+-.+.+||+|.+|..++
T Consensus 620 -~~sls~SPngD~LAT~H 636 (910)
T KOG1539|consen 620 -CTSLSFSPNGDFLATVH 636 (910)
T ss_pred -ceeeEECCCCCEEEEEE
Confidence 56899999999999998
No 58
>KOG0639 consensus Transducin-like enhancer of split protein (contains WD40 repeats) [Chromatin structure and dynamics]
Probab=96.73 E-value=0.0037 Score=61.56 Aligned_cols=98 Identities=20% Similarity=0.250 Sum_probs=68.1
Q ss_pred EEcCCCCeEEEEeccCceEEEEEeCCCCCeeEEEEEEecCcccccccCCCCCCceeEEEEcCCCCEEEEEeCCCCcEEEE
Q 027522 6 LHDPSKDIGFVGCALASTMVRFSKTQDGSWNHEVAISVKSLKVQNWILPEMPGLITDFLISLDDRFLYFSNWLHGDIRQY 85 (222)
Q Consensus 6 afhP~g~~aYvv~ELsstV~~~~~d~~g~~~~~q~is~~p~~~~g~~~~~~~~~~adI~iSpDgrfLYvSnRgh~sI~vf 85 (222)
..+|||+.+-|..| .|||.+|...+ -+...+.. ++. -...+.++.||||-+..|.|| .+|.|++|
T Consensus 472 kL~pdgrtLivGGe-astlsiWDLAa-pTprikae--lts----------sapaCyALa~spDakvcFscc-sdGnI~vw 536 (705)
T KOG0639|consen 472 KLLPDGRTLIVGGE-ASTLSIWDLAA-PTPRIKAE--LTS----------SAPACYALAISPDAKVCFSCC-SDGNIAVW 536 (705)
T ss_pred EecCCCceEEeccc-cceeeeeeccC-CCcchhhh--cCC----------cchhhhhhhcCCccceeeeec-cCCcEEEE
Confidence 46899999999999 78999997742 12221111 111 013468999999999998887 57899999
Q ss_pred EecCCCCCeEEEEEEecceeecCCceeeeeCCCCCCCCCCccccCcccCCCCeeEEECCCCCEEEEE
Q 027522 86 NIEDPKNPVLTGQIWVGGLFRKGSPVVAVTDDGQPYQSDVPEVQGHRLRGGPQMIQLSLDGKRLYVT 152 (222)
Q Consensus 86 ~i~d~~~~~L~~~v~~gG~~~~~~~~~~~~~~~~~~~p~~~~v~G~~~~ggPr~~~lspdGk~Lyva 152 (222)
|+-+ ..+|++..- ++ .|...+.+|+||.+|+-.
T Consensus 537 DLhn---q~~VrqfqG--------------------ht-----------DGascIdis~dGtklWTG 569 (705)
T KOG0639|consen 537 DLHN---QTLVRQFQG--------------------HT-----------DGASCIDISKDGTKLWTG 569 (705)
T ss_pred Eccc---ceeeecccC--------------------CC-----------CCceeEEecCCCceeecC
Confidence 9954 445444331 11 235689999999999866
No 59
>KOG1273 consensus WD40 repeat protein [General function prediction only]
Probab=96.72 E-value=0.031 Score=52.62 Aligned_cols=68 Identities=24% Similarity=0.224 Sum_probs=49.4
Q ss_pred EEEcCCCCeEEEEeccCceEEEEEeCCCCCeeEEEEEEecCcccccccCCCCCCceeEEEEcCCCCEEEEEeCCCCcEEE
Q 027522 5 FLHDPSKDIGFVGCALASTMVRFSKTQDGSWNHEVAISVKSLKVQNWILPEMPGLITDFLISLDDRFLYFSNWLHGDIRQ 84 (222)
Q Consensus 5 ~afhP~g~~aYvv~ELsstV~~~~~d~~g~~~~~q~is~~p~~~~g~~~~~~~~~~adI~iSpDgrfLYvSnRgh~sI~v 84 (222)
+.|++.|.++-|.|. ++.|..|.++. +..- .++.+.. -..+-+.-|+|||+|..|.| +.+|.+
T Consensus 29 ~~Fs~~G~~lAvGc~-nG~vvI~D~~T---~~ia---r~lsaH~---------~pi~sl~WS~dgr~LltsS~-D~si~l 91 (405)
T KOG1273|consen 29 CQFSRWGDYLAVGCA-NGRVVIYDFDT---FRIA---RMLSAHV---------RPITSLCWSRDGRKLLTSSR-DWSIKL 91 (405)
T ss_pred EEeccCcceeeeecc-CCcEEEEEccc---cchh---hhhhccc---------cceeEEEecCCCCEeeeecC-CceeEE
Confidence 569999999999998 67777777642 2211 2222221 12478999999999999887 679999
Q ss_pred EEecC
Q 027522 85 YNIED 89 (222)
Q Consensus 85 f~i~d 89 (222)
||+.+
T Consensus 92 wDl~~ 96 (405)
T KOG1273|consen 92 WDLLK 96 (405)
T ss_pred EeccC
Confidence 99965
No 60
>PTZ00420 coronin; Provisional
Probab=96.70 E-value=0.091 Score=52.29 Aligned_cols=114 Identities=12% Similarity=0.091 Sum_probs=69.3
Q ss_pred eEEEcCC-CCeEEEEeccCceEEEEEeCCCCCe-eEE-EEEEecCcccccccCCCCCCceeEEEEcCCCCEEEEEeCCCC
Q 027522 4 RFLHDPS-KDIGFVGCALASTMVRFSKTQDGSW-NHE-VAISVKSLKVQNWILPEMPGLITDFLISLDDRFLYFSNWLHG 80 (222)
Q Consensus 4 r~afhP~-g~~aYvv~ELsstV~~~~~d~~g~~-~~~-q~is~~p~~~~g~~~~~~~~~~adI~iSpDgrfLYvSnRgh~ 80 (222)
-++|||+ +..+...++ +++|.+|.....+.. ... ..+... .+. ......|..||+++.+.+|.-.++
T Consensus 79 ~lafsP~~~~lLASgS~-DgtIrIWDi~t~~~~~~~i~~p~~~L----~gH-----~~~V~sVaf~P~g~~iLaSgS~Dg 148 (568)
T PTZ00420 79 DLQFNPCFSEILASGSE-DLTIRVWEIPHNDESVKEIKDPQCIL----KGH-----KKKISIIDWNPMNYYIMCSSGFDS 148 (568)
T ss_pred EEEEcCCCCCEEEEEeC-CCeEEEEECCCCCccccccccceEEe----ecC-----CCcEEEEEECCCCCeEEEEEeCCC
Confidence 3678997 566666655 888888876422211 100 011111 111 144689999999999888877789
Q ss_pred cEEEEEecCCCCCeEEEEEEecceeecCCceeeeeCCCCCCCCCCccccCcccCCCCeeEEECCCCCEEEEEe--CCCCc
Q 027522 81 DIRQYNIEDPKNPVLTGQIWVGGLFRKGSPVVAVTDDGQPYQSDVPEVQGHRLRGGPQMIQLSLDGKRLYVTN--SLFSA 158 (222)
Q Consensus 81 sI~vf~i~d~~~~~L~~~v~~gG~~~~~~~~~~~~~~~~~~~p~~~~v~G~~~~ggPr~~~lspdGk~LyvaN--sl~~~ 158 (222)
.|.+|++.. ++.+-.+.. +.. ...++++|||+.|.++. .-..-
T Consensus 149 tIrIWDl~t---g~~~~~i~~----------------------------~~~----V~SlswspdG~lLat~s~D~~IrI 193 (568)
T PTZ00420 149 FVNIWDIEN---EKRAFQINM----------------------------PKK----LSSLKWNIKGNLLSGTCVGKHMHI 193 (568)
T ss_pred eEEEEECCC---CcEEEEEec----------------------------CCc----EEEEEECCCCCEEEEEecCCEEEE
Confidence 999999953 333222221 111 56889999999887764 23344
Q ss_pred cccc
Q 027522 159 WDCQ 162 (222)
Q Consensus 159 wd~Q 162 (222)
||-.
T Consensus 194 wD~R 197 (568)
T PTZ00420 194 IDPR 197 (568)
T ss_pred EECC
Confidence 5543
No 61
>PRK04043 tolB translocation protein TolB; Provisional
Probab=96.66 E-value=0.03 Score=53.10 Aligned_cols=56 Identities=9% Similarity=-0.041 Sum_probs=31.9
Q ss_pred EEEcCCCCeEEEEeccCc--eEEEEEeCCCCCeeEEEEEEecCcccccccCCCCCCceeEEEEcCCCCEEEEEeCC
Q 027522 5 FLHDPSKDIGFVGCALAS--TMVRFSKTQDGSWNHEVAISVKSLKVQNWILPEMPGLITDFLISLDDRFLYFSNWL 78 (222)
Q Consensus 5 ~afhP~g~~aYvv~ELss--tV~~~~~d~~g~~~~~q~is~~p~~~~g~~~~~~~~~~adI~iSpDgrfLYvSnRg 78 (222)
..|+|||+.+|.+..-.. .|+++..+ .|+. ++ ++. .+. ....+||||++|..+.+.
T Consensus 282 p~~SPDG~~I~F~Sdr~g~~~Iy~~dl~-~g~~--~r-lt~-----~g~---------~~~~~SPDG~~Ia~~~~~ 339 (419)
T PRK04043 282 GNFVEDDKRIVFVSDRLGYPNIFMKKLN-SGSV--EQ-VVF-----HGK---------NNSSVSTYKNYIVYSSRE 339 (419)
T ss_pred cEECCCCCEEEEEECCCCCceEEEEECC-CCCe--Ee-Ccc-----CCC---------cCceECCCCCEEEEEEcC
Confidence 469999987766664333 36555543 3333 12 221 121 123799999988766553
No 62
>KOG0293 consensus WD40 repeat-containing protein [Function unknown]
Probab=96.66 E-value=0.018 Score=55.63 Aligned_cols=71 Identities=13% Similarity=0.158 Sum_probs=47.1
Q ss_pred EEEcCCCCeEEEEeccCceEEEEEeCCCCCeeEEEEEEecCcccccccCCCCCCceeEEEEcCCCCEEEEEeCCCCcEEE
Q 027522 5 FLHDPSKDIGFVGCALASTMVRFSKTQDGSWNHEVAISVKSLKVQNWILPEMPGLITDFLISLDDRFLYFSNWLHGDIRQ 84 (222)
Q Consensus 5 ~afhP~g~~aYvv~ELsstV~~~~~d~~g~~~~~q~is~~p~~~~g~~~~~~~~~~adI~iSpDgrfLYvSnRgh~sI~v 84 (222)
+.|+++|++.-...- ++|...|.-..+++++...+..-.. ...+-|.-|||+|+|-+|. -.+.++.
T Consensus 230 l~FS~nGkyLAsaSk-D~Taiiw~v~~d~~~kl~~tlvgh~------------~~V~yi~wSPDdryLlaCg-~~e~~~l 295 (519)
T KOG0293|consen 230 LQFSHNGKYLASASK-DSTAIIWIVVYDVHFKLKKTLVGHS------------QPVSYIMWSPDDRYLLACG-FDEVLSL 295 (519)
T ss_pred EEEcCCCeeEeeccC-CceEEEEEEecCcceeeeeeeeccc------------CceEEEEECCCCCeEEecC-chHheee
Confidence 469999997665543 4554444443456666666543221 3358999999999996655 4667999
Q ss_pred EEecC
Q 027522 85 YNIED 89 (222)
Q Consensus 85 f~i~d 89 (222)
|+++.
T Consensus 296 wDv~t 300 (519)
T KOG0293|consen 296 WDVDT 300 (519)
T ss_pred ccCCc
Confidence 99853
No 63
>KOG0266 consensus WD40 repeat-containing protein [General function prediction only]
Probab=96.49 E-value=0.13 Score=49.10 Aligned_cols=98 Identities=16% Similarity=0.199 Sum_probs=64.9
Q ss_pred eEEEcCCCCeEEEEe-ccCceEEEEEeCCCCCeeEEEEEEecCcccccccCCCCCCceeEEEEcCCCCEEEEEeCCCCcE
Q 027522 4 RFLHDPSKDIGFVGC-ALASTMVRFSKTQDGSWNHEVAISVKSLKVQNWILPEMPGLITDFLISLDDRFLYFSNWLHGDI 82 (222)
Q Consensus 4 r~afhP~g~~aYvv~-ELsstV~~~~~d~~g~~~~~q~is~~p~~~~g~~~~~~~~~~adI~iSpDgrfLYvSnRgh~sI 82 (222)
+++|+|+++ |+++ -.+.+|-+|.-..++ ...+++. | +++....+.++|+| -+.+|...+++|
T Consensus 208 ~~~fs~d~~--~l~s~s~D~tiriwd~~~~~--~~~~~l~-------g-----H~~~v~~~~f~p~g-~~i~Sgs~D~tv 270 (456)
T KOG0266|consen 208 DVAFSPDGS--YLLSGSDDKTLRIWDLKDDG--RNLKTLK-------G-----HSTYVTSVAFSPDG-NLLVSGSDDGTV 270 (456)
T ss_pred eeEECCCCc--EEEEecCCceEEEeeccCCC--eEEEEec-------C-----CCCceEEEEecCCC-CEEEEecCCCcE
Confidence 578999999 4433 356667777652222 2223322 1 12556999999999 788999999999
Q ss_pred EEEEecCCCCCeEEEEEEecceeecCCceeeeeCCCCCCCCCCccccCcccCCCCeeEEECCCCCEEEEE
Q 027522 83 RQYNIEDPKNPVLTGQIWVGGLFRKGSPVVAVTDDGQPYQSDVPEVQGHRLRGGPQMIQLSLDGKRLYVT 152 (222)
Q Consensus 83 ~vf~i~d~~~~~L~~~v~~gG~~~~~~~~~~~~~~~~~~~p~~~~v~G~~~~ggPr~~~lspdGk~Lyva 152 (222)
++|++.. ++++..+.... ++=..+.+++||..|.++
T Consensus 271 riWd~~~---~~~~~~l~~hs-------------------------------~~is~~~f~~d~~~l~s~ 306 (456)
T KOG0266|consen 271 RIWDVRT---GECVRKLKGHS-------------------------------DGISGLAFSPDGNLLVSA 306 (456)
T ss_pred EEEeccC---CeEEEeeeccC-------------------------------CceEEEEECCCCCEEEEc
Confidence 9999953 55544444310 013567899999988777
No 64
>PTZ00421 coronin; Provisional
Probab=96.41 E-value=0.11 Score=50.54 Aligned_cols=106 Identities=14% Similarity=0.090 Sum_probs=63.3
Q ss_pred eEEEcC-CCCeEEEEeccCceEEEEEeCCCCCe-eEEEEEEecCcccccccCCCCCCceeEEEEcCCCCEEEEEeCCCCc
Q 027522 4 RFLHDP-SKDIGFVGCALASTMVRFSKTQDGSW-NHEVAISVKSLKVQNWILPEMPGLITDFLISLDDRFLYFSNWLHGD 81 (222)
Q Consensus 4 r~afhP-~g~~aYvv~ELsstV~~~~~d~~g~~-~~~q~is~~p~~~~g~~~~~~~~~~adI~iSpDgrfLYvSnRgh~s 81 (222)
-+.|+| ++++++..++ +.+|.+|.....+.- .....+..+ .+. ......|.++|++..+.+|.-..+.
T Consensus 80 ~v~fsP~d~~~LaSgS~-DgtIkIWdi~~~~~~~~~~~~l~~L----~gH-----~~~V~~l~f~P~~~~iLaSgs~Dgt 149 (493)
T PTZ00421 80 DVAFNPFDPQKLFTASE-DGTIMGWGIPEEGLTQNISDPIVHL----QGH-----TKKVGIVSFHPSAMNVLASAGADMV 149 (493)
T ss_pred EEEEcCCCCCEEEEEeC-CCEEEEEecCCCccccccCcceEEe----cCC-----CCcEEEEEeCcCCCCEEEEEeCCCE
Confidence 478999 7777766665 889988876432210 000111111 121 1346889999997544555545789
Q ss_pred EEEEEecCCCCCeEEEEEEecceeecCCceeeeeCCCCCCCCCCccccCcccCCCCeeEEECCCCCEEEEEe
Q 027522 82 IRQYNIEDPKNPVLTGQIWVGGLFRKGSPVVAVTDDGQPYQSDVPEVQGHRLRGGPQMIQLSLDGKRLYVTN 153 (222)
Q Consensus 82 I~vf~i~d~~~~~L~~~v~~gG~~~~~~~~~~~~~~~~~~~p~~~~v~G~~~~ggPr~~~lspdGk~LyvaN 153 (222)
|.+|++.. ++.+..+.. . .. .-+.++++|||+.|+.+.
T Consensus 150 VrIWDl~t---g~~~~~l~~--h-------------------------~~----~V~sla~spdG~lLatgs 187 (493)
T PTZ00421 150 VNVWDVER---GKAVEVIKC--H-------------------------SD----QITSLEWNLDGSLLCTTS 187 (493)
T ss_pred EEEEECCC---CeEEEEEcC--C-------------------------CC----ceEEEEEECCCCEEEEec
Confidence 99999953 333222211 0 11 156789999999887764
No 65
>PF08309 LVIVD: LVIVD repeat; InterPro: IPR013211 This repeat is found in bacterial and archaeal cell surface proteins, many of which are hypothetical. The secondary structure corresponding to this repeat is predicted to comprise 4 beta-strands, which may associate to form a beta-propeller. The repeat copy number varies from 2-14. This repeat is sometimes found with the PKD domain IPR000601 from INTERPRO.
Probab=96.32 E-value=0.022 Score=38.07 Aligned_cols=38 Identities=24% Similarity=0.431 Sum_probs=30.2
Q ss_pred eeEEEEcCCCCEEEEEeCCCCcEEEEEecCCCCCeEEEEEE
Q 027522 60 ITDFLISLDDRFLYFSNWLHGDIRQYNIEDPKNPVLTGQIW 100 (222)
Q Consensus 60 ~adI~iSpDgrfLYvSnRgh~sI~vf~i~d~~~~~L~~~v~ 100 (222)
+.+|.+ .|.++|++.+. +.+.++||++|.+|++++++.
T Consensus 4 a~~v~v--~g~yaYva~~~-~Gl~IvDISnPs~P~~v~~~~ 41 (42)
T PF08309_consen 4 ARDVAV--SGNYAYVADGN-NGLVIVDISNPSNPVLVGSYD 41 (42)
T ss_pred EEEEEE--ECCEEEEEeCC-CCEEEEECCCCCCCEEEEEec
Confidence 345444 57799999765 568999999999999998875
No 66
>KOG0645 consensus WD40 repeat protein [General function prediction only]
Probab=96.18 E-value=0.55 Score=43.51 Aligned_cols=69 Identities=14% Similarity=0.252 Sum_probs=51.8
Q ss_pred eEEEcCCCCeEEEEec-cCceEEEEEeCCCCCeeEEEEEEecCcccccccCCCCCCceeEEEEcCCCCEEEEEeCCCCcE
Q 027522 4 RFLHDPSKDIGFVGCA-LASTMVRFSKTQDGSWNHEVAISVKSLKVQNWILPEMPGLITDFLISLDDRFLYFSNWLHGDI 82 (222)
Q Consensus 4 r~afhP~g~~aYvv~E-LsstV~~~~~d~~g~~~~~q~is~~p~~~~g~~~~~~~~~~adI~iSpDgrfLYvSnRgh~sI 82 (222)
+.|++|.|+ |+.++ .++|+..+++. +|.|+-..++.=. + +..--+..|++|+||-.+.|. .++
T Consensus 66 svAwsp~g~--~La~aSFD~t~~Iw~k~-~~efecv~~lEGH----E--------nEVK~Vaws~sG~~LATCSRD-KSV 129 (312)
T KOG0645|consen 66 SVAWSPHGR--YLASASFDATVVIWKKE-DGEFECVATLEGH----E--------NEVKCVAWSASGNYLATCSRD-KSV 129 (312)
T ss_pred eeeecCCCc--EEEEeeccceEEEeecC-CCceeEEeeeecc----c--------cceeEEEEcCCCCEEEEeeCC-CeE
Confidence 478999999 55555 78999999874 6788764443321 2 345678999999999888885 589
Q ss_pred EEEEec
Q 027522 83 RQYNIE 88 (222)
Q Consensus 83 ~vf~i~ 88 (222)
++|.++
T Consensus 130 WiWe~d 135 (312)
T KOG0645|consen 130 WIWEID 135 (312)
T ss_pred EEEEec
Confidence 999996
No 67
>KOG2096 consensus WD40 repeat protein [General function prediction only]
Probab=96.18 E-value=0.081 Score=50.02 Aligned_cols=110 Identities=17% Similarity=0.191 Sum_probs=72.7
Q ss_pred EeEEEcCCCCeEEEEeccCceEEEEEeC--CCCCeeEEEEEEecCcccccccCCCCCCceeEEEEcCCCCEEEEEeCCCC
Q 027522 3 IRFLHDPSKDIGFVGCALASTMVRFSKT--QDGSWNHEVAISVKSLKVQNWILPEMPGLITDFLISLDDRFLYFSNWLHG 80 (222)
Q Consensus 3 vr~afhP~g~~aYvv~ELsstV~~~~~d--~~g~~~~~q~is~~p~~~~g~~~~~~~~~~adI~iSpDgrfLYvSnRgh~ 80 (222)
.|.+|.||.+-+-|-+.-++++.+|..+ ++|.+....+- +-...+...- ....-+|-|--.++|+ .|+-...
T Consensus 136 T~V~FapDc~s~vv~~~~g~~l~vyk~~K~~dG~~~~~~v~-~D~~~f~~kh----~v~~i~iGiA~~~k~i-msas~dt 209 (420)
T KOG2096|consen 136 TRVVFAPDCKSVVVSVKRGNKLCVYKLVKKTDGSGSHHFVH-IDNLEFERKH----QVDIINIGIAGNAKYI-MSASLDT 209 (420)
T ss_pred eEEEECCCcceEEEEEccCCEEEEEEeeecccCCCCccccc-ccccccchhc----ccceEEEeecCCceEE-EEecCCC
Confidence 5889999999999999999999999764 45655432210 0000011100 0224567777777877 5666788
Q ss_pred cEEEEEecCCCCCeEEEEEEecceeecCCceeeeeCCCCCCCCCCccccCcccCCCCeeEEECCCCCEEEEEe
Q 027522 81 DIRQYNIEDPKNPVLTGQIWVGGLFRKGSPVVAVTDDGQPYQSDVPEVQGHRLRGGPQMIQLSLDGKRLYVTN 153 (222)
Q Consensus 81 sI~vf~i~d~~~~~L~~~v~~gG~~~~~~~~~~~~~~~~~~~p~~~~v~G~~~~ggPr~~~lspdGk~LyvaN 153 (222)
.|..|+. ++++.+.|.+... . --|-++||+||||.++-
T Consensus 210 ~i~lw~l----kGq~L~~idtnq~---------------------------~----n~~aavSP~GRFia~~g 247 (420)
T KOG2096|consen 210 KICLWDL----KGQLLQSIDTNQS---------------------------S----NYDAAVSPDGRFIAVSG 247 (420)
T ss_pred cEEEEec----CCceeeeeccccc---------------------------c----ccceeeCCCCcEEEEec
Confidence 9999976 2777777776211 1 34789999999998874
No 68
>KOG0263 consensus Transcription initiation factor TFIID, subunit TAF5 (also component of histone acetyltransferase SAGA) [Transcription]
Probab=96.10 E-value=0.055 Score=55.02 Aligned_cols=100 Identities=20% Similarity=0.253 Sum_probs=64.8
Q ss_pred Ee-EEEcCCCCeEEEEeccCceEEEEEeCCCCCeeEEEEEEecCcccccccCCCCCCceeEEEEcCCCCEEEEEeCCCCc
Q 027522 3 IR-FLHDPSKDIGFVGCALASTMVRFSKTQDGSWNHEVAISVKSLKVQNWILPEMPGLITDFLISLDDRFLYFSNWLHGD 81 (222)
Q Consensus 3 vr-~afhP~g~~aYvv~ELsstV~~~~~d~~g~~~~~q~is~~p~~~~g~~~~~~~~~~adI~iSpDgrfLYvSnRgh~s 81 (222)
|+ ..||||..|+... -.+-||-.|.-. .|.- +.+ |.|.. +....+++||+|||| +|.--.+.
T Consensus 538 V~cv~FHPNs~Y~aTG-SsD~tVRlWDv~-~G~~-----VRi----F~GH~-----~~V~al~~Sp~Gr~L-aSg~ed~~ 600 (707)
T KOG0263|consen 538 VDCVSFHPNSNYVATG-SSDRTVRLWDVS-TGNS-----VRI----FTGHK-----GPVTALAFSPCGRYL-ASGDEDGL 600 (707)
T ss_pred cceEEECCcccccccC-CCCceEEEEEcC-CCcE-----EEE----ecCCC-----CceEEEEEcCCCceE-eecccCCc
Confidence 55 6899999877666 345556666542 3321 222 23432 457999999999999 77777899
Q ss_pred EEEEEecCCCCCeEEEEEEecceeecCCceeeeeCCCCCCCCCCccccCcccCCCCeeEEECCCCCEEEEEe
Q 027522 82 IRQYNIEDPKNPVLTGQIWVGGLFRKGSPVVAVTDDGQPYQSDVPEVQGHRLRGGPQMIQLSLDGKRLYVTN 153 (222)
Q Consensus 82 I~vf~i~d~~~~~L~~~v~~gG~~~~~~~~~~~~~~~~~~~p~~~~v~G~~~~ggPr~~~lspdGk~LyvaN 153 (222)
|-+||+.. ++++.+... . .|.--.+.+|.||..|.++.
T Consensus 601 I~iWDl~~---~~~v~~l~~-----------------------------H--t~ti~SlsFS~dg~vLasgg 638 (707)
T KOG0263|consen 601 IKIWDLAN---GSLVKQLKG-----------------------------H--TGTIYSLSFSRDGNVLASGG 638 (707)
T ss_pred EEEEEcCC---Ccchhhhhc-----------------------------c--cCceeEEEEecCCCEEEecC
Confidence 99999943 333322111 0 11133589999999998886
No 69
>KOG0315 consensus G-protein beta subunit-like protein (contains WD40 repeats) [General function prediction only]
Probab=96.10 E-value=0.061 Score=49.31 Aligned_cols=97 Identities=13% Similarity=0.138 Sum_probs=66.7
Q ss_pred EEEcCCCCeEEEEeccCceEEEEEeCCCCCeeEEEEEEecCcccccccCCCCCCceeEEEEcCCCCEEEEEeCCCCcEEE
Q 027522 5 FLHDPSKDIGFVGCALASTMVRFSKTQDGSWNHEVAISVKSLKVQNWILPEMPGLITDFLISLDDRFLYFSNWLHGDIRQ 84 (222)
Q Consensus 5 ~afhP~g~~aYvv~ELsstV~~~~~d~~g~~~~~q~is~~p~~~~g~~~~~~~~~~adI~iSpDgrfLYvSnRgh~sI~v 84 (222)
..|+-+|++.|...| +.+|-++.... +...+....+ +....|.|+|+..-|.++.. .+.|++
T Consensus 89 VgF~~dgrWMyTgse-Dgt~kIWdlR~---~~~qR~~~~~-------------spVn~vvlhpnQteLis~dq-sg~irv 150 (311)
T KOG0315|consen 89 VGFQCDGRWMYTGSE-DGTVKIWDLRS---LSCQRNYQHN-------------SPVNTVVLHPNQTELISGDQ-SGNIRV 150 (311)
T ss_pred EEEeecCeEEEecCC-CceEEEEeccC---cccchhccCC-------------CCcceEEecCCcceEEeecC-CCcEEE
Confidence 469999999999999 77877776532 2211111211 34578999999999988875 678999
Q ss_pred EEecCC-CCCeEEEEEEecceeecCCceeeeeCCCCCCCCCCccccCcccCCCCeeEEECCCCCEEEEEe
Q 027522 85 YNIEDP-KNPVLTGQIWVGGLFRKGSPVVAVTDDGQPYQSDVPEVQGHRLRGGPQMIQLSLDGKRLYVTN 153 (222)
Q Consensus 85 f~i~d~-~~~~L~~~v~~gG~~~~~~~~~~~~~~~~~~~p~~~~v~G~~~~ggPr~~~lspdGk~LyvaN 153 (222)
||+... ..-.| ++ +. +.. -|.+++.|||+.|.++|
T Consensus 151 WDl~~~~c~~~l---iP-----------------------e~----~~~----i~sl~v~~dgsml~a~n 186 (311)
T KOG0315|consen 151 WDLGENSCTHEL---IP-----------------------ED----DTS----IQSLTVMPDGSMLAAAN 186 (311)
T ss_pred EEccCCcccccc---CC-----------------------CC----Ccc----eeeEEEcCCCcEEEEec
Confidence 999542 22223 11 11 122 57899999999999999
No 70
>KOG0318 consensus WD40 repeat stress protein/actin interacting protein [Cytoskeleton]
Probab=96.10 E-value=0.12 Score=51.33 Aligned_cols=70 Identities=17% Similarity=0.190 Sum_probs=50.2
Q ss_pred EEEcCCCCeEEEEeccCceEEEEEeCCCCCeeEEEEEEecCcccccccCCCCCCceeEEEEcCCCCEEEEEeCCCCcEEE
Q 027522 5 FLHDPSKDIGFVGCALASTMVRFSKTQDGSWNHEVAISVKSLKVQNWILPEMPGLITDFLISLDDRFLYFSNWLHGDIRQ 84 (222)
Q Consensus 5 ~afhP~g~~aYvv~ELsstV~~~~~d~~g~~~~~q~is~~p~~~~g~~~~~~~~~~adI~iSpDgrfLYvSnRgh~sI~v 84 (222)
.|+||++..+-|..| ++.|.+|.... +.+..+.+ .+. .. +.+++|..|||+.|| +++-.+..+.+
T Consensus 449 vAv~~~~~~vaVGG~-Dgkvhvysl~g-~~l~ee~~-~~~---h~--------a~iT~vaySpd~~yl-a~~Da~rkvv~ 513 (603)
T KOG0318|consen 449 VAVSPDGSEVAVGGQ-DGKVHVYSLSG-DELKEEAK-LLE---HR--------AAITDVAYSPDGAYL-AAGDASRKVVL 513 (603)
T ss_pred EEEcCCCCEEEEecc-cceEEEEEecC-Ccccceee-eec---cc--------CCceEEEECCCCcEE-EEeccCCcEEE
Confidence 578999999999888 56688887753 33322211 111 11 457999999999999 55567899999
Q ss_pred EEecC
Q 027522 85 YNIED 89 (222)
Q Consensus 85 f~i~d 89 (222)
|++..
T Consensus 514 yd~~s 518 (603)
T KOG0318|consen 514 YDVAS 518 (603)
T ss_pred EEccc
Confidence 99965
No 71
>KOG2110 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=96.06 E-value=0.25 Score=47.13 Aligned_cols=75 Identities=20% Similarity=0.309 Sum_probs=50.3
Q ss_pred CceeEEEEcCCCCEEEEEeCCCCcEEEEEecCCCCCeEEEEEEecceeecC-CceeeeeCCCCCCCCCCccccCcccCCC
Q 027522 58 GLITDFLISLDDRFLYFSNWLHGDIRQYNIEDPKNPVLTGQIWVGGLFRKG-SPVVAVTDDGQPYQSDVPEVQGHRLRGG 136 (222)
Q Consensus 58 ~~~adI~iSpDgrfLYvSnRgh~sI~vf~i~d~~~~~L~~~v~~gG~~~~~-~~~~~~~~~~~~~~p~~~~v~G~~~~gg 136 (222)
...|.+.+|+||..|-.+.--.--|+||.|.+ +.++-+ |+|+ -+|.+.
T Consensus 174 ~~lAalafs~~G~llATASeKGTVIRVf~v~~---G~kl~e------FRRG~~~~~Iy---------------------- 222 (391)
T KOG2110|consen 174 GPLAALAFSPDGTLLATASEKGTVIRVFSVPE---GQKLYE------FRRGTYPVSIY---------------------- 222 (391)
T ss_pred CceeEEEECCCCCEEEEeccCceEEEEEEcCC---ccEeee------eeCCceeeEEE----------------------
Confidence 34699999999999975544334689999954 333222 2221 111222
Q ss_pred CeeEEECCCCCEEEEEeCCCCccccccccccccCCcEEEEEEe
Q 027522 137 PQMIQLSLDGKRLYVTNSLFSAWDCQFYPELKEKGSHMLQIDV 179 (222)
Q Consensus 137 Pr~~~lspdGk~LyvaNsl~~~wd~Q~yp~~~s~~~~i~~~dv 179 (222)
.+++|||+++|-++.+ ++.+++|+++-
T Consensus 223 --SL~Fs~ds~~L~~sS~--------------TeTVHiFKL~~ 249 (391)
T KOG2110|consen 223 --SLSFSPDSQFLAASSN--------------TETVHIFKLEK 249 (391)
T ss_pred --EEEECCCCCeEEEecC--------------CCeEEEEEecc
Confidence 4789999999988852 67888998854
No 72
>KOG0772 consensus Uncharacterized conserved protein, contains WD40 repeat [Function unknown]
Probab=95.92 E-value=0.062 Score=53.26 Aligned_cols=134 Identities=18% Similarity=0.256 Sum_probs=84.6
Q ss_pred EEEcCCCCeEEEEeccCceEEEEEeCCCCCeeEEEEEEecCcccccccCCCCCCceeEEEEcCCCCEEEEEeCCCCcEEE
Q 027522 5 FLHDPSKDIGFVGCALASTMVRFSKTQDGSWNHEVAISVKSLKVQNWILPEMPGLITDFLISLDDRFLYFSNWLHGDIRQ 84 (222)
Q Consensus 5 ~afhP~g~~aYvv~ELsstV~~~~~d~~g~~~~~q~is~~p~~~~g~~~~~~~~~~adI~iSpDgrfLYvSnRgh~sI~v 84 (222)
.+|+|+|+++-..| ++.+|-.|.+ |.|....++-+-.+.-.| ..++-|.+|+||++| .|--.++++.+
T Consensus 323 C~~nrdg~~iAagc-~DGSIQ~W~~---~~~~v~p~~~vk~AH~~g-------~~Itsi~FS~dg~~L-lSRg~D~tLKv 390 (641)
T KOG0772|consen 323 CAWNRDGKLIAAGC-LDGSIQIWDK---GSRTVRPVMKVKDAHLPG-------QDITSISFSYDGNYL-LSRGFDDTLKV 390 (641)
T ss_pred eecCCCcchhhhcc-cCCceeeeec---CCcccccceEeeeccCCC-------CceeEEEeccccchh-hhccCCCceee
Confidence 58999999944444 7888988876 456555555444333222 357899999999998 44445799999
Q ss_pred EEecCCCCCeEEEEEEecceeecCCceeeeeCCCCCCCCCCccccCcccCCCCeeEEECCCCCEEEEEeCCCCccccccc
Q 027522 85 YNIEDPKNPVLTGQIWVGGLFRKGSPVVAVTDDGQPYQSDVPEVQGHRLRGGPQMIQLSLDGKRLYVTNSLFSAWDCQFY 164 (222)
Q Consensus 85 f~i~d~~~~~L~~~v~~gG~~~~~~~~~~~~~~~~~~~p~~~~v~G~~~~ggPr~~~lspdGk~LyvaNsl~~~wd~Q~y 164 (222)
|++.....+.+ +++| .|+.. . --+.++|||.+.++...|+ +.
T Consensus 391 WDLrq~kkpL~---~~tg-------------------L~t~~--~-------~tdc~FSPd~kli~TGtS~------~~- 432 (641)
T KOG0772|consen 391 WDLRQFKKPLN---VRTG-------------------LPTPF--P-------GTDCCFSPDDKLILTGTSA------PN- 432 (641)
T ss_pred eeccccccchh---hhcC-------------------CCccC--C-------CCccccCCCceEEEecccc------cC-
Confidence 99966555544 2331 12211 0 1368999999977766642 11
Q ss_pred cccccCCcEEEEEEeeCCCCCeeeccceeEecC
Q 027522 165 PELKEKGSHMLQIDVNSEKGGMAINPNFFVDFE 197 (222)
Q Consensus 165 p~~~s~~~~i~~~dvd~~~G~l~~~~~f~vdf~ 197 (222)
. .....++-+| .|+++..+.|||.
T Consensus 433 --~-~~~g~L~f~d------~~t~d~v~ki~i~ 456 (641)
T KOG0772|consen 433 --G-MTAGTLFFFD------RMTLDTVYKIDIS 456 (641)
T ss_pred --C-CCCceEEEEe------ccceeeEEEecCC
Confidence 1 1123566663 3567777778776
No 73
>PF13449 Phytase-like: Esterase-like activity of phytase
Probab=95.59 E-value=0.96 Score=41.29 Aligned_cols=127 Identities=17% Similarity=0.157 Sum_probs=70.8
Q ss_pred EEEcCCCCeEEEEeccCc-----eEEEEEeCC----CCCeeEEEEEEecCcccccccCCCCCCceeEEEEcCCCCEEEEE
Q 027522 5 FLHDPSKDIGFVGCALAS-----TMVRFSKTQ----DGSWNHEVAISVKSLKVQNWILPEMPGLITDFLISLDDRFLYFS 75 (222)
Q Consensus 5 ~afhP~g~~aYvv~ELss-----tV~~~~~d~----~g~~~~~q~is~~p~~~~g~~~~~~~~~~adI~iSpDgrfLYvS 75 (222)
+++.|++...|+++--.. .++.+..+. .+..+..+.+.+.-. .|..+.....-+=.|++.+||.|+..+
T Consensus 25 l~~~~~~~~~~avSD~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~--~G~~~~~~~~D~Egi~~~~~g~~~is~ 102 (326)
T PF13449_consen 25 LDYDPDDGRFYAVSDRGPNKGPPRFYTFRIDYDQGGIGGVTILDMIPLRDP--DGQPFPKNGLDPEGIAVPPDGSFWISS 102 (326)
T ss_pred EEEeCCCCEEEEEECCCCCCCCCcEEEEEeeccCCCccceEeccceeccCC--CCCcCCcCCCChhHeEEecCCCEEEEe
Confidence 567777778888876554 255554432 133444444444321 122111000012367888888888777
Q ss_pred eCC-----CCcEEEEEecCCCCCeEEEEEEecceeecCCceeeeeCCCCCCCCCCccccCcccCCCCeeEEECCCCCEEE
Q 027522 76 NWL-----HGDIRQYNIEDPKNPVLTGQIWVGGLFRKGSPVVAVTDDGQPYQSDVPEVQGHRLRGGPQMIQLSLDGKRLY 150 (222)
Q Consensus 76 nRg-----h~sI~vf~i~d~~~~~L~~~v~~gG~~~~~~~~~~~~~~~~~~~p~~~~v~G~~~~ggPr~~~lspdGk~Ly 150 (222)
-+. +-.|+.|+.+ +++...+.+-..+ .|......+.+...|..-|+++|||++||
T Consensus 103 E~~~~~~~~p~I~~~~~~----G~~~~~~~vP~~~----------------~~~~~~~~~~~~N~G~E~la~~~dG~~l~ 162 (326)
T PF13449_consen 103 EGGRTGGIPPRIRRFDLD----GRVIRRFPVPAAF----------------LPDANGTSGRRNNRGFEGLAVSPDGRTLF 162 (326)
T ss_pred CCccCCCCCCEEEEECCC----CcccceEcccccc----------------ccccCccccccCCCCeEEEEECCCCCEEE
Confidence 665 2578777542 5555544431111 11111114556667889999999999999
Q ss_pred EEe
Q 027522 151 VTN 153 (222)
Q Consensus 151 vaN 153 (222)
++.
T Consensus 163 ~~~ 165 (326)
T PF13449_consen 163 AAM 165 (326)
T ss_pred EEE
Confidence 998
No 74
>TIGR03606 non_repeat_PQQ dehydrogenase, PQQ-dependent, s-GDH family. PQQ, or pyrroloquinoline-quinone, serves as a cofactor for a number of sugar and alcohol dehydrogenases in a limited number of bacterial species. Most characterized PQQ-dependent enzymes have multiple repeats of a sequence region described by pfam01011 (PQQ enzyme repeat), but this protein family in unusual in lacking that repeat. Below the noise cutoff are related proteins mostly from species that lack PQQ biosynthesis.
Probab=95.41 E-value=0.39 Score=46.78 Aligned_cols=74 Identities=15% Similarity=0.295 Sum_probs=44.7
Q ss_pred eEEEcCCCCeEEEEecc-CceEEEEEeCCCCCeeEEEEEEecCcccc-cccCCCCCCceeEEEEcCC------CCEEEEE
Q 027522 4 RFLHDPSKDIGFVGCAL-ASTMVRFSKTQDGSWNHEVAISVKSLKVQ-NWILPEMPGLITDFLISLD------DRFLYFS 75 (222)
Q Consensus 4 r~afhP~g~~aYvv~EL-sstV~~~~~d~~g~~~~~q~is~~p~~~~-g~~~~~~~~~~adI~iSpD------grfLYvS 75 (222)
-++|-|+|+ +| +.|- ..+|.++..+ ++. ...+..++..-.. +. ...-+|+++|| .++||++
T Consensus 34 ~maflPDG~-ll-VtER~~G~I~~v~~~-~~~--~~~~~~l~~v~~~~ge------~GLlglal~PdF~~~~~n~~lYvs 102 (454)
T TIGR03606 34 ALLWGPDNQ-LW-VTERATGKILRVNPE-TGE--VKVVFTLPEIVNDAQH------NGLLGLALHPDFMQEKGNPYVYIS 102 (454)
T ss_pred EEEEcCCCe-EE-EEEecCCEEEEEeCC-CCc--eeeeecCCceeccCCC------CceeeEEECCCccccCCCcEEEEE
Confidence 378999984 44 5666 6899988532 222 1222233211111 22 44589999988 4799998
Q ss_pred eC---------CCCcEEEEEec
Q 027522 76 NW---------LHGDIRQYNIE 88 (222)
Q Consensus 76 nR---------gh~sI~vf~i~ 88 (222)
.- .+..|+.|..+
T Consensus 103 yt~~~~~~~~~~~~~I~R~~l~ 124 (454)
T TIGR03606 103 YTYKNGDKELPNHTKIVRYTYD 124 (454)
T ss_pred EeccCCCCCccCCcEEEEEEec
Confidence 51 25678888885
No 75
>PTZ00420 coronin; Provisional
Probab=95.35 E-value=0.93 Score=45.27 Aligned_cols=67 Identities=6% Similarity=0.029 Sum_probs=47.9
Q ss_pred EEEcCCCCeEEEEeccCceEEEEEeCCCCCeeEEEEEEecCcccccccCCCCCCceeEEEEcCCCCEEEEEeCCCCcEEE
Q 027522 5 FLHDPSKDIGFVGCALASTMVRFSKTQDGSWNHEVAISVKSLKVQNWILPEMPGLITDFLISLDDRFLYFSNWLHGDIRQ 84 (222)
Q Consensus 5 ~afhP~g~~aYvv~ELsstV~~~~~d~~g~~~~~q~is~~p~~~~g~~~~~~~~~~adI~iSpDgrfLYvSnRgh~sI~v 84 (222)
++|||++..+.+..-.+.+|.+|... ++.. ...+.. . .....|.+||||+.|.+++. .+.|++
T Consensus 131 Vaf~P~g~~iLaSgS~DgtIrIWDl~-tg~~--~~~i~~-----~--------~~V~SlswspdG~lLat~s~-D~~IrI 193 (568)
T PTZ00420 131 IDWNPMNYYIMCSSGFDSFVNIWDIE-NEKR--AFQINM-----P--------KKLSSLKWNIKGNLLSGTCV-GKHMHI 193 (568)
T ss_pred EEECCCCCeEEEEEeCCCeEEEEECC-CCcE--EEEEec-----C--------CcEEEEEECCCCCEEEEEec-CCEEEE
Confidence 68999998877777778999988764 3321 112211 1 23578999999999987774 568999
Q ss_pred EEec
Q 027522 85 YNIE 88 (222)
Q Consensus 85 f~i~ 88 (222)
|++.
T Consensus 194 wD~R 197 (568)
T PTZ00420 194 IDPR 197 (568)
T ss_pred EECC
Confidence 9884
No 76
>KOG2055 consensus WD40 repeat protein [General function prediction only]
Probab=95.31 E-value=0.19 Score=49.14 Aligned_cols=33 Identities=27% Similarity=0.518 Sum_probs=28.8
Q ss_pred CCCceeEEEEcCCCCEEEEEeCCCCcEEEEEecC
Q 027522 56 MPGLITDFLISLDDRFLYFSNWLHGDIRQYNIED 89 (222)
Q Consensus 56 ~~~~~adI~iSpDgrfLYvSnRgh~sI~vf~i~d 89 (222)
+++..+++.+|.|+|.||+|| +.|.|++|++..
T Consensus 343 ieG~v~~~~fsSdsk~l~~~~-~~GeV~v~nl~~ 375 (514)
T KOG2055|consen 343 IEGVVSDFTFSSDSKELLASG-GTGEVYVWNLRQ 375 (514)
T ss_pred eccEEeeEEEecCCcEEEEEc-CCceEEEEecCC
Confidence 346789999999999999999 678999999954
No 77
>KOG0291 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=95.24 E-value=0.42 Score=49.31 Aligned_cols=114 Identities=18% Similarity=0.242 Sum_probs=70.7
Q ss_pred EeEEEcCCCCeEEEEeccCceEEEEEe-CCCCCeeEEEEEEecCcccccccCCCCCCceeEEEEcCCCCEEEEEeCCCCc
Q 027522 3 IRFLHDPSKDIGFVGCALASTMVRFSK-TQDGSWNHEVAISVKSLKVQNWILPEMPGLITDFLISLDDRFLYFSNWLHGD 81 (222)
Q Consensus 3 vr~afhP~g~~aYvv~ELsstV~~~~~-d~~g~~~~~q~is~~p~~~~g~~~~~~~~~~adI~iSpDgrfLYvSnRgh~s 81 (222)
.++.|+|.|..++... -+.||-.|.. +..|+ ..++.+. .-+.++.++|||+-|-|+. ..|.
T Consensus 482 s~l~f~~~~~~LaS~S-WDkTVRiW~if~s~~~---vEtl~i~-------------sdvl~vsfrPdG~elaVaT-ldgq 543 (893)
T KOG0291|consen 482 SGLSFSPDGSLLASGS-WDKTVRIWDIFSSSGT---VETLEIR-------------SDVLAVSFRPDGKELAVAT-LDGQ 543 (893)
T ss_pred eeeEEccccCeEEecc-ccceEEEEEeeccCce---eeeEeec-------------cceeEEEEcCCCCeEEEEE-ecce
Confidence 3678899888776654 3667666643 22222 2233322 3357899999999999988 6789
Q ss_pred EEEEEecCCCCCeEEEEEEe-----cceeecCCceeeeeCCCCCCCCCCccccCcccCCCCeeEEECCCCCEEEEEe
Q 027522 82 IRQYNIEDPKNPVLTGQIWV-----GGLFRKGSPVVAVTDDGQPYQSDVPEVQGHRLRGGPQMIQLSLDGKRLYVTN 153 (222)
Q Consensus 82 I~vf~i~d~~~~~L~~~v~~-----gG~~~~~~~~~~~~~~~~~~~p~~~~v~G~~~~ggPr~~~lspdGk~LyvaN 153 (222)
|..|++.. ...++.|.. +|...++ ..-.....+||. =-.+.+|+||+.++++-
T Consensus 544 Itf~d~~~---~~q~~~IdgrkD~~~gR~~~D------------~~ta~~sa~~K~----Ftti~ySaDG~~IlAgG 601 (893)
T KOG0291|consen 544 ITFFDIKE---AVQVGSIDGRKDLSGGRKETD------------RITAENSAKGKT----FTTICYSADGKCILAGG 601 (893)
T ss_pred EEEEEhhh---ceeeccccchhhccccccccc------------eeehhhcccCCc----eEEEEEcCCCCEEEecC
Confidence 99999854 334433332 1211110 000113345665 56789999999999886
No 78
>COG5276 Uncharacterized conserved protein [Function unknown]
Probab=95.21 E-value=0.88 Score=42.85 Aligned_cols=39 Identities=28% Similarity=0.503 Sum_probs=33.5
Q ss_pred eEEEEcCCCCEEEEEeCCCCcEEEEEecCCCCCeEEEEEEec
Q 027522 61 TDFLISLDDRFLYFSNWLHGDIRQYNIEDPKNPVLTGQIWVG 102 (222)
Q Consensus 61 adI~iSpDgrfLYvSnRgh~sI~vf~i~d~~~~~L~~~v~~g 102 (222)
-+++|| |++-||++|..| +.+-||++|.+|+|+++..+|
T Consensus 175 ~~v~IS--Gn~AYvA~~d~G-L~ivDVSnp~sPvli~~~n~g 213 (370)
T COG5276 175 HDVAIS--GNYAYVAWRDGG-LTIVDVSNPHSPVLIGSYNTG 213 (370)
T ss_pred eeEEEe--cCeEEEEEeCCC-eEEEEccCCCCCeEEEEEecC
Confidence 367776 889999999765 777899999999999999886
No 79
>KOG4499 consensus Ca2+-binding protein Regucalcin/SMP30 [Inorganic ion transport and metabolism; Signal transduction mechanisms]
Probab=95.21 E-value=0.19 Score=46.03 Aligned_cols=141 Identities=16% Similarity=0.115 Sum_probs=80.0
Q ss_pred CceEEEEEeCCCCCeeEEEEEEecCcccccccCCCCCCceeEEEEcCCCCEEEEEeCCCCcEEEEEecCCCCCeEEEEEE
Q 027522 21 ASTMVRFSKTQDGSWNHEVAISVKSLKVQNWILPEMPGLITDFLISLDDRFLYFSNWLHGDIRQYNIEDPKNPVLTGQIW 100 (222)
Q Consensus 21 sstV~~~~~d~~g~~~~~q~is~~p~~~~g~~~~~~~~~~adI~iSpDgrfLYvSnRgh~sI~vf~i~d~~~~~L~~~v~ 100 (222)
++......++ |.|+...+.+++++- ..... .+..-|=.++||||| |+-.-. +.-..| .+-.+.|-. ..
T Consensus 78 G~kf~i~nwd--~~~~~a~v~~t~~ev-~~d~k---knR~NDgkvdP~Gry-y~GtMa-d~~~~l---e~~~g~Ly~-~~ 145 (310)
T KOG4499|consen 78 GSKFVIVNWD--GVSESAKVYRTLFEV-QPDRK---KNRLNDGKVDPDGRY-YGGTMA-DFGDDL---EPIGGELYS-WL 145 (310)
T ss_pred cceEEEEEcc--cccceeeeeeecccc-CchHH---hcccccCccCCCCce-eeeeec-cccccc---cccccEEEE-ec
Confidence 4455555663 566666666654321 11000 144568889999999 775432 111111 122233311 11
Q ss_pred ecceeecCCceeeeeCCCCCCCCCCccccCcccCCCCeeEEECCCCCEEEEEeCCCCccccccccccccCCcEEEEEEee
Q 027522 101 VGGLFRKGSPVVAVTDDGQPYQSDVPEVQGHRLRGGPQMIQLSLDGKRLYVTNSLFSAWDCQFYPELKEKGSHMLQIDVN 180 (222)
Q Consensus 101 ~gG~~~~~~~~~~~~~~~~~~~p~~~~v~G~~~~ggPr~~~lspdGk~LyvaNsl~~~wd~Q~yp~~~s~~~~i~~~dvd 180 (222)
.++ +|+++- .-+|-|+-++.+.|-|..|+.. |.+-.|-.+|-|
T Consensus 146 ~~h------~v~~i~----------------~~v~IsNgl~Wd~d~K~fY~iD---------------sln~~V~a~dyd 188 (310)
T KOG4499|consen 146 AGH------QVELIW----------------NCVGISNGLAWDSDAKKFYYID---------------SLNYEVDAYDYD 188 (310)
T ss_pred cCC------Cceeee----------------hhccCCccccccccCcEEEEEc---------------cCceEEeeeecC
Confidence 111 122221 1123388899999999999998 567888778878
Q ss_pred CCCCCeeeccceeEecCCCCCCCcceeeeecCCCCc
Q 027522 181 SEKGGMAINPNFFVDFEAEPDGPALAHEMRYPGGDC 216 (222)
Q Consensus 181 ~~~G~l~~~~~f~vdf~~~~~g~~~~h~~r~~~gd~ 216 (222)
-.||.+ .|.+...|..+ +.+.|--+|+|-|
T Consensus 189 ~~tG~~-snr~~i~dlrk-----~~~~e~~~PDGm~ 218 (310)
T KOG4499|consen 189 CPTGDL-SNRKVIFDLRK-----SQPFESLEPDGMT 218 (310)
T ss_pred CCcccc-cCcceeEEecc-----CCCcCCCCCCcce
Confidence 888876 57788888877 2444444555544
No 80
>COG5276 Uncharacterized conserved protein [Function unknown]
Probab=95.19 E-value=0.14 Score=47.96 Aligned_cols=44 Identities=27% Similarity=0.627 Sum_probs=36.3
Q ss_pred CceeEEEEcCCCCEEEEEeCCCCcEEEEEecCCCCCeEEEEEEecce
Q 027522 58 GLITDFLISLDDRFLYFSNWLHGDIRQYNIEDPKNPVLTGQIWVGGL 104 (222)
Q Consensus 58 ~~~adI~iSpDgrfLYvSnRgh~sI~vf~i~d~~~~~L~~~v~~gG~ 104 (222)
+..+|+.+|- .++|++-|- .-++++||++|++|+|.++..+-|.
T Consensus 87 ~l~~Dv~vse--~yvyvad~s-sGL~IvDIS~P~sP~~~~~lnt~gy 130 (370)
T COG5276 87 DLFADVRVSE--EYVYVADWS-SGLRIVDISTPDSPTLIGFLNTDGY 130 (370)
T ss_pred hhhheeEecc--cEEEEEcCC-CceEEEeccCCCCcceeccccCCce
Confidence 6678999984 699999865 4599999999999999888887443
No 81
>KOG4499 consensus Ca2+-binding protein Regucalcin/SMP30 [Inorganic ion transport and metabolism; Signal transduction mechanisms]
Probab=95.06 E-value=0.48 Score=43.45 Aligned_cols=86 Identities=13% Similarity=0.167 Sum_probs=58.1
Q ss_pred EEEcCCCCeEEEEeccCceEEEEEeC-CCCCeeEEEEE-EecC-cccccccCCCCCCceeEEEEcCCCCEEEEEeCCCCc
Q 027522 5 FLHDPSKDIGFVGCALASTMVRFSKT-QDGSWNHEVAI-SVKS-LKVQNWILPEMPGLITDFLISLDDRFLYFSNWLHGD 81 (222)
Q Consensus 5 ~afhP~g~~aYvv~ELsstV~~~~~d-~~g~~~~~q~i-s~~p-~~~~g~~~~~~~~~~adI~iSpDgrfLYvSnRgh~s 81 (222)
++++-+.+..|++.-|+-+|-.|.|+ +.|.+...+++ .+-. .+++ +-.+-.+.|.- .-+|||++|..+.
T Consensus 163 l~Wd~d~K~fY~iDsln~~V~a~dyd~~tG~~snr~~i~dlrk~~~~e-------~~~PDGm~ID~-eG~L~Va~~ng~~ 234 (310)
T KOG4499|consen 163 LAWDSDAKKFYYIDSLNYEVDAYDYDCPTGDLSNRKVIFDLRKSQPFE-------SLEPDGMTIDT-EGNLYVATFNGGT 234 (310)
T ss_pred ccccccCcEEEEEccCceEEeeeecCCCcccccCcceeEEeccCCCcC-------CCCCCcceEcc-CCcEEEEEecCcE
Confidence 56778899999999999999999987 66766555544 3321 1111 12334455555 4589999998876
Q ss_pred EEEEEecCCCCCeEEEEEEe
Q 027522 82 IRQYNIEDPKNPVLTGQIWV 101 (222)
Q Consensus 82 I~vf~i~d~~~~~L~~~v~~ 101 (222)
|..+ ||.++|+..++..
T Consensus 235 V~~~---dp~tGK~L~eikl 251 (310)
T KOG4499|consen 235 VQKV---DPTTGKILLEIKL 251 (310)
T ss_pred EEEE---CCCCCcEEEEEEc
Confidence 6555 5677888666654
No 82
>KOG2110 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=95.02 E-value=0.63 Score=44.46 Aligned_cols=155 Identities=19% Similarity=0.207 Sum_probs=80.8
Q ss_pred EEEcCCCCeEEEEeccCceEEEEEeCCCCCeeEEEEEEecCcccccccCCCCCCceeEEEEcCCCCEEEEEeCCCCcEEE
Q 027522 5 FLHDPSKDIGFVGCALASTMVRFSKTQDGSWNHEVAISVKSLKVQNWILPEMPGLITDFLISLDDRFLYFSNWLHGDIRQ 84 (222)
Q Consensus 5 ~afhP~g~~aYvv~ELsstV~~~~~d~~g~~~~~q~is~~p~~~~g~~~~~~~~~~adI~iSpDgrfLYvSnRgh~sI~v 84 (222)
++|||+|...-...|- +||.+.+--++|+.- ...- .|.. |..++-|.+|||+.||-+|. -.++|-+
T Consensus 179 lafs~~G~llATASeK-GTVIRVf~v~~G~kl----~eFR----RG~~----~~~IySL~Fs~ds~~L~~sS-~TeTVHi 244 (391)
T KOG2110|consen 179 LAFSPDGTLLATASEK-GTVIRVFSVPEGQKL----YEFR----RGTY----PVSIYSLSFSPDSQFLAASS-NTETVHI 244 (391)
T ss_pred EEECCCCCEEEEeccC-ceEEEEEEcCCccEe----eeee----CCce----eeEEEEEEECCCCCeEEEec-CCCeEEE
Confidence 5677777777777763 444443332344211 0110 2221 26679999999999998776 4689999
Q ss_pred EEecCCCCCeEE---EEEEecceeecC--C----ceeeeeCCCCCCCCCCccccCcccCCCC--eeEEEC--CCCCEEEE
Q 027522 85 YNIEDPKNPVLT---GQIWVGGLFRKG--S----PVVAVTDDGQPYQSDVPEVQGHRLRGGP--QMIQLS--LDGKRLYV 151 (222)
Q Consensus 85 f~i~d~~~~~L~---~~v~~gG~~~~~--~----~~~~~~~~~~~~~p~~~~v~G~~~~ggP--r~~~ls--pdGk~Lyv 151 (222)
|.++.....+.- ......+.+.+. + .|.-.-+-+ +..-..++.+.+ +...|+ +.+.+++|
T Consensus 245 FKL~~~~~~~~~~p~~~~~~~~~~sk~~~sylps~V~~~~~~~-------R~FAt~~l~~s~~~~~~~l~~~~~~~~v~v 317 (391)
T KOG2110|consen 245 FKLEKVSNNPPESPTAGTSWFGKVSKAATSYLPSQVSSVLDQS-------RKFATAKLPESGRKNICSLSSIQKIPRVLV 317 (391)
T ss_pred EEecccccCCCCCCCCCCcccchhhhhhhhhcchhhhhhhhhc-------cceeEEEccCCCccceEEeeccCCCCEEEE
Confidence 999652211110 001111111110 0 011110111 112233444455 455666 48899999
Q ss_pred EeCCCCccccccccccccCCcEEEEEEeeCCC-CCeeeccceeEec
Q 027522 152 TNSLFSAWDCQFYPELKEKGSHMLQIDVNSEK-GGMAINPNFFVDF 196 (222)
Q Consensus 152 aNsl~~~wd~Q~yp~~~s~~~~i~~~dvd~~~-G~l~~~~~f~vdf 196 (222)
|. .++++..+.+++++ |...+-+....++
T Consensus 318 as----------------~dG~~y~y~l~~~~gGec~lik~h~~~~ 347 (391)
T KOG2110|consen 318 AS----------------YDGHLYSYRLPPKEGGECALIKRHFLDG 347 (391)
T ss_pred EE----------------cCCeEEEEEcCCCCCceeEEEEeeccCC
Confidence 98 35677777778865 4455554444433
No 83
>PF05694 SBP56: 56kDa selenium binding protein (SBP56); InterPro: IPR008826 This family consists of several eukaryotic selenium binding proteins as well as three sequences from archaea. The exact function of this protein is unknown although it is thought that SBP56 participates in late stages of intra-Golgi protein transport []. The Lotus japonicus homologue of SBP56, LjSBP is thought to have more than one physiological role and can be implicated in controlling the oxidation/reduction status of target proteins in vesicular Golgi transport [].; GO: 0008430 selenium binding; PDB: 2ECE_A.
Probab=94.96 E-value=0.59 Score=45.65 Aligned_cols=133 Identities=14% Similarity=0.150 Sum_probs=64.0
Q ss_pred cCceEEEEEeCCCCCeeEEEEEEecCcccccccCCCCCCceeEEEEc--CCCCEEEEEeCCCCcEEEEEecCCCCCeEE-
Q 027522 20 LASTMVRFSKTQDGSWNHEVAISVKSLKVQNWILPEMPGLITDFLIS--LDDRFLYFSNWLHGDIRQYNIEDPKNPVLT- 96 (222)
Q Consensus 20 LsstV~~~~~d~~g~~~~~q~is~~p~~~~g~~~~~~~~~~adI~iS--pDgrfLYvSnRgh~sI~vf~i~d~~~~~L~- 96 (222)
.++++.+|.+. +-+.+|+|.++++. ..+=+|+.. |+--+=||.+-...+|..|--++ .++..
T Consensus 220 yG~~l~vWD~~---~r~~~Q~idLg~~g----------~~pLEvRflH~P~~~~gFvg~aLss~i~~~~k~~--~g~W~a 284 (461)
T PF05694_consen 220 YGHSLHVWDWS---TRKLLQTIDLGEEG----------QMPLEVRFLHDPDANYGFVGCALSSSIWRFYKDD--DGEWAA 284 (461)
T ss_dssp S--EEEEEETT---TTEEEEEEES-TTE----------EEEEEEEE-SSTT--EEEEEEE--EEEEEEEE-E--TTEEEE
T ss_pred ccCeEEEEECC---CCcEeeEEecCCCC----------CceEEEEecCCCCccceEEEEeccceEEEEEEcC--CCCeee
Confidence 36788999885 34778999987532 234567665 45778889999999999887743 24332
Q ss_pred EEEEecceeecCCceeeeeCCCCCCCCCCccccCcccCCCCeeEEECCCCCEEEEEeCCCCccccccccccccCCcEEEE
Q 027522 97 GQIWVGGLFRKGSPVVAVTDDGQPYQSDVPEVQGHRLRGGPQMIQLSLDGKRLYVTNSLFSAWDCQFYPELKEKGSHMLQ 176 (222)
Q Consensus 97 ~~v~~gG~~~~~~~~~~~~~~~~~~~p~~~~v~G~~~~ggPr~~~lspdGk~LyvaNsl~~~wd~Q~yp~~~s~~~~i~~ 176 (222)
.+|-. ++. .+| +-+..|+-..--|. +-+-+-++.||.|.|||||+| | -.+-|.+
T Consensus 285 ~kVi~---ip~---~~v----~~~~lp~ml~~~~~-~P~LitDI~iSlDDrfLYvs~-----W----------~~Gdvrq 338 (461)
T PF05694_consen 285 EKVID---IPA---KKV----EGWILPEMLKPFGA-VPPLITDILISLDDRFLYVSN-----W----------LHGDVRQ 338 (461)
T ss_dssp EEEEE---E-----EE------SS---GGGGGG-E-E------EEE-TTS-EEEEEE-----T----------TTTEEEE
T ss_pred eEEEE---CCC---ccc----Cccccccccccccc-CCCceEeEEEccCCCEEEEEc-----c----------cCCcEEE
Confidence 11111 100 001 11222221000000 123378999999999999999 2 3556788
Q ss_pred EEeeCCCCCeeeccceeE
Q 027522 177 IDVNSEKGGMAINPNFFV 194 (222)
Q Consensus 177 ~dvd~~~G~l~~~~~f~v 194 (222)
+|| ++.-.-++..+..+
T Consensus 339 YDI-SDP~~Pkl~gqv~l 355 (461)
T PF05694_consen 339 YDI-SDPFNPKLVGQVFL 355 (461)
T ss_dssp EE--SSTTS-EEEEEEE-
T ss_pred Eec-CCCCCCcEEeEEEE
Confidence 998 45556666665544
No 84
>KOG0306 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=94.90 E-value=0.29 Score=50.42 Aligned_cols=105 Identities=23% Similarity=0.268 Sum_probs=62.0
Q ss_pred EEEcCCCCeEEEEeccCceEEEEEeC----CCCCeeEEEEEEecCcccccccCCCCCCceeEEEEcCCCCEEEEEeCCCC
Q 027522 5 FLHDPSKDIGFVGCALASTMVRFSKT----QDGSWNHEVAISVKSLKVQNWILPEMPGLITDFLISLDDRFLYFSNWLHG 80 (222)
Q Consensus 5 ~afhP~g~~aYvv~ELsstV~~~~~d----~~g~~~~~q~is~~p~~~~g~~~~~~~~~~adI~iSpDgrfLYvSnRgh~ 80 (222)
++-.|+++..-.+.+ +.||-.|... ..|+- .+++++..... =+.+..+-.+.+|||||||-||- ..+
T Consensus 460 i~~~pD~~g~vT~sa-DktVkfWdf~l~~~~~gt~--~k~lsl~~~rt-----Lel~ddvL~v~~Spdgk~LaVsL-Ldn 530 (888)
T KOG0306|consen 460 ISLSPDNKGFVTGSA-DKTVKFWDFKLVVSVPGTQ--KKVLSLKHTRT-----LELEDDVLCVSVSPDGKLLAVSL-LDN 530 (888)
T ss_pred eeecCCCCceEEecC-CcEEEEEeEEEEeccCccc--ceeeeeccceE-----EeccccEEEEEEcCCCcEEEEEe-ccC
Confidence 345677776555544 6666555331 12321 12233221100 01224568899999999999997 688
Q ss_pred cEEEEEecCCCCCeEEEEEEecceeecCCceeeeeCCCCCCCCCCccccCcccCCCC-eeEEECCCCCEEEEEeC
Q 027522 81 DIRQYNIEDPKNPVLTGQIWVGGLFRKGSPVVAVTDDGQPYQSDVPEVQGHRLRGGP-QMIQLSLDGKRLYVTNS 154 (222)
Q Consensus 81 sI~vf~i~d~~~~~L~~~v~~gG~~~~~~~~~~~~~~~~~~~p~~~~v~G~~~~ggP-r~~~lspdGk~LyvaNs 154 (222)
++-+|-++. .++ .++.= |.. -| +.|.||||++ |+||.|
T Consensus 531 TVkVyflDt---lKF--flsLY---------------------------GHk---LPV~smDIS~DSk-livTgS 569 (888)
T KOG0306|consen 531 TVKVYFLDT---LKF--FLSLY---------------------------GHK---LPVLSMDISPDSK-LIVTGS 569 (888)
T ss_pred eEEEEEecc---eee--eeeec---------------------------ccc---cceeEEeccCCcC-eEEecc
Confidence 999999954 444 12331 222 14 8999999999 556654
No 85
>PF01731 Arylesterase: Arylesterase; InterPro: IPR002640 The serum paraoxonases/arylesterases are enzymes that catalyse the hydrolysis of the toxic metabolites of a variety of organophosphorus insecticides. The enzymes hydrolyse a broad spectrum of organophosphate substrates, including paraoxon and a number of aromatic carboxylic acid esters (e.g., phenyl acetate), and hence confer resistance to organophosphate toxicity []. Mammals have 3 distinct paraoxonase types, termed PON1-3 [, ]. In mice and humans, the PON genes are found on the same chromosome in close proximity. PON activity has been found in variety of tissues, with highest levels in liver and serum - the source of serum PON is thought to be the liver. Unlike mammals, fish and avian species lack paraoxonase activity. Human and rabbit PONs appear to have two distinct Ca2+ binding sites, one required for stability and one required for catalytic activity. The Ca2+ dependency of PONs suggests a mechanism of hydrolysis where Ca2+ acts as the electrophillic catalyst, like that proposed for phospholipase A2. The paraoxonase enzymes, PON1 and PON3, are high density lipoprotein (HDL)- associated proteins capable of preventing oxidative modification of low density lipoproteins (LPL) []. Although PON2 has oxidative properties, the enzyme does not associate with HDL. Within a given species, PON1, PON2 and PON3 share ~60% amino acid sequence identity, whereas between mammalian species particular PONs (1,2 or 3) share 79-90% identity at the amino acid level. Human PON1 and PON3 share numerous conserved phosphorylation and N-glycosylation sites; however, it is not known whether the PON proteins are modified at these sites, or whether modification at these sites is required for activity in vivo []. This family consists of arylesterases (Also known as serum paraoxonase) 3.1.1.2 from EC. These enzymes hydrolyse organophosphorus esters such as paraoxon and are found in the liver and blood. They confer resistance to organophosphate toxicity []. Human arylesterase (PON1) P27169 from SWISSPROT is associated with HDL and may protect against LDL oxidation [].; GO: 0004064 arylesterase activity
Probab=94.89 E-value=0.052 Score=41.45 Aligned_cols=32 Identities=25% Similarity=0.438 Sum_probs=28.4
Q ss_pred CceeEEEEcCCCCEEEEEeCCCCcEEEEEecC
Q 027522 58 GLITDFLISLDDRFLYFSNWLHGDIRQYNIED 89 (222)
Q Consensus 58 ~~~adI~iSpDgrfLYvSnRgh~sI~vf~i~d 89 (222)
..+-.|.+|||+|+||||.-...+|.+|++.+
T Consensus 54 ~~aNGI~~s~~~k~lyVa~~~~~~I~vy~~~~ 85 (86)
T PF01731_consen 54 SFANGIAISPDKKYLYVASSLAHSIHVYKRHK 85 (86)
T ss_pred CCCceEEEcCCCCEEEEEeccCCeEEEEEecC
Confidence 34578999999999999999999999999853
No 86
>COG0823 TolB Periplasmic component of the Tol biopolymer transport system [Intracellular trafficking and secretion]
Probab=94.62 E-value=0.4 Score=46.04 Aligned_cols=67 Identities=19% Similarity=0.217 Sum_probs=38.9
Q ss_pred EEEcCCC-CeEEEEeccCce--EEEEEeCCCCCeeEEEEEEecCcccccccCCCCCCceeEEEEcCCCCEEEEEeCCCCc
Q 027522 5 FLHDPSK-DIGFVGCALAST--MVRFSKTQDGSWNHEVAISVKSLKVQNWILPEMPGLITDFLISLDDRFLYFSNWLHGD 81 (222)
Q Consensus 5 ~afhP~g-~~aYvv~ELsst--V~~~~~d~~g~~~~~q~is~~p~~~~g~~~~~~~~~~adI~iSpDgrfLYvSnRgh~s 81 (222)
-.+.|++ +.+|+.-|...+ +++...+ .|.- .++.+ +. ....+...|||||+|-.|-=..++
T Consensus 198 p~ws~~~~~~~y~~f~~~~~~~i~~~~l~-~g~~--~~i~~-----~~--------g~~~~P~fspDG~~l~f~~~rdg~ 261 (425)
T COG0823 198 PAWSPDGKKLAYVSFELGGCPRIYYLDLN-TGKR--PVILN-----FN--------GNNGAPAFSPDGSKLAFSSSRDGS 261 (425)
T ss_pred cccCcCCCceEEEEEecCCCceEEEEecc-CCcc--ceeec-----cC--------CccCCccCCCCCCEEEEEECCCCC
Confidence 3566664 567777666663 5555443 2211 22222 22 223677899999998766555577
Q ss_pred EEEEEe
Q 027522 82 IRQYNI 87 (222)
Q Consensus 82 I~vf~i 87 (222)
..+|-+
T Consensus 262 ~~iy~~ 267 (425)
T COG0823 262 PDIYLM 267 (425)
T ss_pred ccEEEE
Confidence 666666
No 87
>TIGR02604 Piru_Ver_Nterm putative membrane-bound dehydrogenase domain. All proteins that score above the trusted cutoff score of 45 to this model are large proteins of either Pirellula sp. 1 or Verrucomicrobium spinosum. These proteins all contain, in addition to this domain, several hundred residues of highly variable sequence, and then a well-conserved C-terminal domain (TIGR02603) that features a putative cytochrome c-type heme binding motif CXXCH. The membrane-bound L-sorbosone dehydrogenase from Acetobacter liquefaciens (Gluconacetobacter liquefaciens) is homologous to this domain but lacks additional sequence regions shared by members of this family and belongs to a different clade of the larger family of homologs. It and its closely related homologs are excluded from the this model by scoring between the trusted (45) and noise (18) cutoffs.
Probab=94.57 E-value=0.56 Score=43.32 Aligned_cols=63 Identities=11% Similarity=0.125 Sum_probs=36.4
Q ss_pred EEEcCCCCeEEEEeccCceEEEEEeC-CCCCee-EEEE-EEecCcccccccCCCCCCceeEEEEcCCCCEEEEEeC
Q 027522 5 FLHDPSKDIGFVGCALASTMVRFSKT-QDGSWN-HEVA-ISVKSLKVQNWILPEMPGLITDFLISLDDRFLYFSNW 77 (222)
Q Consensus 5 ~afhP~g~~aYvv~ELsstV~~~~~d-~~g~~~-~~q~-is~~p~~~~g~~~~~~~~~~adI~iSpDgrfLYvSnR 77 (222)
++++++| +||.++ ..|++|... .+|.-. ..++ ++-.+..-. . ....+..+.+.||| +||+|.-
T Consensus 77 i~~~~~G--lyV~~~--~~i~~~~d~~gdg~ad~~~~~l~~~~~~~~~-~----~~~~~~~l~~gpDG-~LYv~~G 142 (367)
T TIGR02604 77 LAVAVGG--VYVATP--PDILFLRDKDGDDKADGEREVLLSGFGGQIN-N----HHHSLNSLAWGPDG-WLYFNHG 142 (367)
T ss_pred eeEecCC--EEEeCC--CeEEEEeCCCCCCCCCCccEEEEEccCCCCC-c----ccccccCceECCCC-CEEEecc
Confidence 5678888 898763 568888653 344333 2222 232222100 0 01335789999999 5998764
No 88
>KOG0293 consensus WD40 repeat-containing protein [Function unknown]
Probab=94.55 E-value=0.18 Score=48.99 Aligned_cols=66 Identities=21% Similarity=0.372 Sum_probs=44.2
Q ss_pred EEEcCCCCeEEEEeccCceEEEEEeCCC--CCeeEEEEEEecCcccccccCCCCCCceeEEEEcCCCCEEEEEeCCCCcE
Q 027522 5 FLHDPSKDIGFVGCALASTMVRFSKTQD--GSWNHEVAISVKSLKVQNWILPEMPGLITDFLISLDDRFLYFSNWLHGDI 82 (222)
Q Consensus 5 ~afhP~g~~aYvv~ELsstV~~~~~d~~--g~~~~~q~is~~p~~~~g~~~~~~~~~~adI~iSpDgrfLYvSnRgh~sI 82 (222)
.++.|||.. +|..--+.++..+..|++ +.|+-..+ ....|++|++||++||..+ -+-.|
T Consensus 318 c~W~pDg~~-~V~Gs~dr~i~~wdlDgn~~~~W~gvr~-----------------~~v~dlait~Dgk~vl~v~-~d~~i 378 (519)
T KOG0293|consen 318 CAWCPDGFR-FVTGSPDRTIIMWDLDGNILGNWEGVRD-----------------PKVHDLAITYDGKYVLLVT-VDKKI 378 (519)
T ss_pred eEEccCCce-eEecCCCCcEEEecCCcchhhccccccc-----------------ceeEEEEEcCCCcEEEEEe-cccce
Confidence 356677776 455445666777765432 44432221 2358999999999999888 57789
Q ss_pred EEEEecC
Q 027522 83 RQYNIED 89 (222)
Q Consensus 83 ~vf~i~d 89 (222)
+.|...+
T Consensus 379 ~l~~~e~ 385 (519)
T KOG0293|consen 379 RLYNREA 385 (519)
T ss_pred eeechhh
Confidence 9998754
No 89
>PF07433 DUF1513: Protein of unknown function (DUF1513); InterPro: IPR008311 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=94.46 E-value=0.41 Score=44.52 Aligned_cols=103 Identities=17% Similarity=0.232 Sum_probs=63.2
Q ss_pred CCCceeEEEEcC-CCCEEEEEeCCCCcEEEEEecCCCCCeEEEEEEecceeecCCceeeeeCCCCCCCCCCccccCcccC
Q 027522 56 MPGLITDFLISL-DDRFLYFSNWLHGDIRQYNIEDPKNPVLTGQIWVGGLFRKGSPVVAVTDDGQPYQSDVPEVQGHRLR 134 (222)
Q Consensus 56 ~~~~~adI~iSp-DgrfLYvSnRgh~sI~vf~i~d~~~~~L~~~v~~gG~~~~~~~~~~~~~~~~~~~p~~~~v~G~~~~ 134 (222)
+|..+-++.++| +++.+.++.|=-.-..+||.. ++++...++.. .|++++
T Consensus 3 lP~RgH~~a~~p~~~~avafaRRPG~~~~v~D~~---~g~~~~~~~a~--------------------------~gRHFy 53 (305)
T PF07433_consen 3 LPARGHGVAAHPTRPEAVAFARRPGTFALVFDCR---TGQLLQRLWAP--------------------------PGRHFY 53 (305)
T ss_pred CCccccceeeCCCCCeEEEEEeCCCcEEEEEEcC---CCceeeEEcCC--------------------------CCCEEe
Confidence 457778999999 666676777655566777663 35554444431 266666
Q ss_pred CCCeeEEECCCCCEEEEEeCCCCccccccccccccCCcEEEEEEeeCCCCCeeeccceeEecCCCCCCCcceeeeec
Q 027522 135 GGPQMIQLSLDGKRLYVTNSLFSAWDCQFYPELKEKGSHMLQIDVNSEKGGMAINPNFFVDFEAEPDGPALAHEMRY 211 (222)
Q Consensus 135 ggPr~~~lspdGk~LyvaNsl~~~wd~Q~yp~~~s~~~~i~~~dvd~~~G~l~~~~~f~vdf~~~~~g~~~~h~~r~ 211 (222)
|. =.+|+||++||++=+ .+ . +.-..|-.+|+. .++.... +|..-.-| ||||++
T Consensus 54 GH---g~fs~dG~~LytTEn-------d~-~---~g~G~IgVyd~~---~~~~ri~----E~~s~GIG---PHel~l 106 (305)
T PF07433_consen 54 GH---GVFSPDGRLLYTTEN-------DY-E---TGRGVIGVYDAA---RGYRRIG----EFPSHGIG---PHELLL 106 (305)
T ss_pred cC---EEEcCCCCEEEEecc-------cc-C---CCcEEEEEEECc---CCcEEEe----EecCCCcC---hhhEEE
Confidence 63 489999999999952 22 1 223555557663 3443322 34444445 788876
No 90
>COG4946 Uncharacterized protein related to the periplasmic component of the Tol biopolymer transport system [Function unknown]
Probab=94.41 E-value=0.86 Score=45.28 Aligned_cols=61 Identities=15% Similarity=0.061 Sum_probs=46.3
Q ss_pred CceeEEEEcCCCCEEEEEeCCCCcEEEEEecCCCCCeEEEEEEecceeecCCceeeeeCCCCCCCCCCccccCcccCCCC
Q 027522 58 GLITDFLISLDDRFLYFSNWLHGDIRQYNIEDPKNPVLTGQIWVGGLFRKGSPVVAVTDDGQPYQSDVPEVQGHRLRGGP 137 (222)
Q Consensus 58 ~~~adI~iSpDgrfLYvSnRgh~sI~vf~i~d~~~~~L~~~v~~gG~~~~~~~~~~~~~~~~~~~p~~~~v~G~~~~ggP 137 (222)
+.+-++.+|+|||++-|+|- ..+|++++|+ .++.+++.+-.-| .=
T Consensus 402 g~I~av~vs~dGK~~vvaNd-r~el~vidid-ngnv~~idkS~~~---------------------------------lI 446 (668)
T COG4946 402 GNIEAVKVSPDGKKVVVAND-RFELWVIDID-NGNVRLIDKSEYG---------------------------------LI 446 (668)
T ss_pred cceEEEEEcCCCcEEEEEcC-ceEEEEEEec-CCCeeEecccccc---------------------------------ee
Confidence 44678999999999999994 4689999994 5788886553321 13
Q ss_pred eeEEECCCCCEEEEEe
Q 027522 138 QMIQLSLDGKRLYVTN 153 (222)
Q Consensus 138 r~~~lspdGk~LyvaN 153 (222)
-.|+++|+++|+--|=
T Consensus 447 tdf~~~~nsr~iAYaf 462 (668)
T COG4946 447 TDFDWHPNSRWIAYAF 462 (668)
T ss_pred EEEEEcCCceeEEEec
Confidence 4789999999986663
No 91
>KOG2096 consensus WD40 repeat protein [General function prediction only]
Probab=94.30 E-value=0.16 Score=48.10 Aligned_cols=85 Identities=18% Similarity=0.156 Sum_probs=56.8
Q ss_pred CceeEEEEcCCCCEEEEEeCCCCcEEEEEecCCCCCeEEEEEEecceeecCCceeeeeCCCCCCCCCCccccCcccCCCC
Q 027522 58 GLITDFLISLDDRFLYFSNWLHGDIRQYNIEDPKNPVLTGQIWVGGLFRKGSPVVAVTDDGQPYQSDVPEVQGHRLRGGP 137 (222)
Q Consensus 58 ~~~adI~iSpDgrfLYvSnRgh~sI~vf~i~d~~~~~L~~~v~~gG~~~~~~~~~~~~~~~~~~~p~~~~v~G~~~~ggP 137 (222)
...+++.+|.|||.| +++-++++|++|++.| ...+-+..+.. .+.=.+ |
T Consensus 87 ~~vt~~~FsSdGK~l-at~~~Dr~Ir~w~~~D-F~~~eHr~~R~-------------------------nve~dh----p 135 (420)
T KOG2096|consen 87 KEVTDVAFSSDGKKL-ATISGDRSIRLWDVRD-FENKEHRCIRQ-------------------------NVEYDH----P 135 (420)
T ss_pred CceeeeEEcCCCcee-EEEeCCceEEEEecch-hhhhhhhHhhc-------------------------cccCCC----c
Confidence 447999999999999 5556899999999966 43333211111 011124 8
Q ss_pred eeEEECCCCCEEEEEeCCCCccccccccccccCCcEEEEEEeeCCCCCee
Q 027522 138 QMIQLSLDGKRLYVTNSLFSAWDCQFYPELKEKGSHMLQIDVNSEKGGMA 187 (222)
Q Consensus 138 r~~~lspdGk~LyvaNsl~~~wd~Q~yp~~~s~~~~i~~~dvd~~~G~l~ 187 (222)
-.+.++||-+-+.|+. .. .+..-|++.+-.++ |+++
T Consensus 136 T~V~FapDc~s~vv~~--------~~-----g~~l~vyk~~K~~d-G~~~ 171 (420)
T KOG2096|consen 136 TRVVFAPDCKSVVVSV--------KR-----GNKLCVYKLVKKTD-GSGS 171 (420)
T ss_pred eEEEECCCcceEEEEE--------cc-----CCEEEEEEeeeccc-CCCC
Confidence 8999999999999987 22 34556666655433 6553
No 92
>PTZ00421 coronin; Provisional
Probab=94.15 E-value=1.4 Score=42.93 Aligned_cols=69 Identities=14% Similarity=0.119 Sum_probs=46.6
Q ss_pred EEEcCCCCeEEEEeccCceEEEEEeCCCCCeeEEEEEEecCcccccccCCCCCCceeEEEEcCCCCEEEEEeCCCCcEEE
Q 027522 5 FLHDPSKDIGFVGCALASTMVRFSKTQDGSWNHEVAISVKSLKVQNWILPEMPGLITDFLISLDDRFLYFSNWLHGDIRQ 84 (222)
Q Consensus 5 ~afhP~g~~aYvv~ELsstV~~~~~d~~g~~~~~q~is~~p~~~~g~~~~~~~~~~adI~iSpDgrfLYvSnRgh~sI~v 84 (222)
++|||++....+..-.+.+|.+|... +++ ....+.. . ......|.+||||+.|..+++ ++.|++
T Consensus 131 l~f~P~~~~iLaSgs~DgtVrIWDl~-tg~--~~~~l~~-------h-----~~~V~sla~spdG~lLatgs~-Dg~IrI 194 (493)
T PTZ00421 131 VSFHPSAMNVLASAGADMVVNVWDVE-RGK--AVEVIKC-------H-----SDQITSLEWNLDGSLLCTTSK-DKKLNI 194 (493)
T ss_pred EEeCcCCCCEEEEEeCCCEEEEEECC-CCe--EEEEEcC-------C-----CCceEEEEEECCCCEEEEecC-CCEEEE
Confidence 67999876555555568899988764 332 1222211 1 134688999999999987764 778999
Q ss_pred EEecC
Q 027522 85 YNIED 89 (222)
Q Consensus 85 f~i~d 89 (222)
||+..
T Consensus 195 wD~rs 199 (493)
T PTZ00421 195 IDPRD 199 (493)
T ss_pred EECCC
Confidence 98843
No 93
>KOG1407 consensus WD40 repeat protein [Function unknown]
Probab=94.14 E-value=0.3 Score=45.04 Aligned_cols=98 Identities=14% Similarity=0.169 Sum_probs=57.6
Q ss_pred EEEcCCCCeEEEEeccCceEEEEEeCCCCCeeEEEEEEecCcccccccCCCCCCceeEEEEcCCCCEEEEEeCCCCcEEE
Q 027522 5 FLHDPSKDIGFVGCALASTMVRFSKTQDGSWNHEVAISVKSLKVQNWILPEMPGLITDFLISLDDRFLYFSNWLHGDIRQ 84 (222)
Q Consensus 5 ~afhP~g~~aYvv~ELsstV~~~~~d~~g~~~~~q~is~~p~~~~g~~~~~~~~~~adI~iSpDgrfLYvSnRgh~sI~v 84 (222)
+.+|-++...|+.|-| ++|-.+.|. .++..+.|..-| +.+--|.++||||++-+-. .+-.+..
T Consensus 153 ~~w~~~nd~Fflt~Gl-G~v~ILsyp---sLkpv~si~AH~------------snCicI~f~p~GryfA~Gs-ADAlvSL 215 (313)
T KOG1407|consen 153 ISWNNSNDLFFLTNGL-GCVEILSYP---SLKPVQSIKAHP------------SNCICIEFDPDGRYFATGS-ADALVSL 215 (313)
T ss_pred eeecCCCCEEEEecCC-ceEEEEecc---ccccccccccCC------------cceEEEEECCCCceEeecc-ccceeec
Confidence 4555444444444443 456666653 344444443322 5578999999999996543 4566888
Q ss_pred EEecCCCCCeEEEEEEecceeecCCceeeeeCCCCCCCCCCccccCcccCCCCeeEEECCCCCEEEEEe
Q 027522 85 YNIEDPKNPVLTGQIWVGGLFRKGSPVVAVTDDGQPYQSDVPEVQGHRLRGGPQMIQLSLDGKRLYVTN 153 (222)
Q Consensus 85 f~i~d~~~~~L~~~v~~gG~~~~~~~~~~~~~~~~~~~p~~~~v~G~~~~ggPr~~~lspdGk~LyvaN 153 (222)
||+++ |+ +.--|+| =.+ .-|.+.+|-|||+|--|.
T Consensus 216 WD~~E-----Li----C~R~isR----------------------ldw---pVRTlSFS~dg~~lASaS 250 (313)
T KOG1407|consen 216 WDVDE-----LI----CERCISR----------------------LDW---PVRTLSFSHDGRMLASAS 250 (313)
T ss_pred cChhH-----hh----hheeecc----------------------ccC---ceEEEEeccCcceeeccC
Confidence 98854 21 0000111 012 149999999999887765
No 94
>PF07995 GSDH: Glucose / Sorbosone dehydrogenase; InterPro: IPR012938 Proteins containing this domain are thought to be glucose/sorbosone dehydrogenases. The best characterised of these proteins is soluble glucose dehydrogenase (P13650 from SWISSPROT) from Acinetobacter calcoaceticus, which oxidises glucose to gluconolactone. The enzyme is a calcium-dependent homodimer which uses PQQ as a cofactor [].; GO: 0016901 oxidoreductase activity, acting on the CH-OH group of donors, quinone or similar compound as acceptor, 0048038 quinone binding, 0005975 carbohydrate metabolic process; PDB: 2ISM_A 2WG3_D 3HO5_A 3HO4_A 3HO3_A 2WFT_A 2WG4_B 2WFX_B 1CRU_A 1CQ1_B ....
Probab=93.85 E-value=0.6 Score=42.76 Aligned_cols=133 Identities=17% Similarity=0.177 Sum_probs=66.5
Q ss_pred EeEEEcCC---CCeEEEEecc--------CceEEEEEeCCC-CCeeEEEEE-EecCcccccccCCCCCCceeEEEEcCCC
Q 027522 3 IRFLHDPS---KDIGFVGCAL--------ASTMVRFSKTQD-GSWNHEVAI-SVKSLKVQNWILPEMPGLITDFLISLDD 69 (222)
Q Consensus 3 vr~afhP~---g~~aYvv~EL--------sstV~~~~~d~~-g~~~~~q~i-s~~p~~~~g~~~~~~~~~~adI~iSpDg 69 (222)
.-++|||+ ..++||.--- .+.|.++.++.+ ..+...+++ ...|....+. -....|.+.|||
T Consensus 52 lgia~~p~f~~n~~lYv~~t~~~~~~~~~~~~v~r~~~~~~~~~~~~~~~l~~~~p~~~~~~------H~g~~l~fgpDG 125 (331)
T PF07995_consen 52 LGIAFHPDFASNGYLYVYYTNADEDGGDNDNRVVRFTLSDGDGDLSSEEVLVTGLPDTSSGN------HNGGGLAFGPDG 125 (331)
T ss_dssp EEEEE-TTCCCC-EEEEEEEEE-TSSSSEEEEEEEEEEETTSCEEEEEEEEEEEEES-CSSS------S-EEEEEE-TTS
T ss_pred ccceeccccCCCCEEEEEEEcccCCCCCcceeeEEEeccCCccccccceEEEEEeCCCCCCC------CCCccccCCCCC
Confidence 45799994 6788887652 357888887532 355555544 3333311111 234679999999
Q ss_pred CEEEEEeCCCCc--EEEEEecCCCCCeEEEEEEecceeecCCceeeeeCCCCCCCCCCccccCcccCCCCeeEEECCCCC
Q 027522 70 RFLYFSNWLHGD--IRQYNIEDPKNPVLTGQIWVGGLFRKGSPVVAVTDDGQPYQSDVPEVQGHRLRGGPQMIQLSLDGK 147 (222)
Q Consensus 70 rfLYvSnRgh~s--I~vf~i~d~~~~~L~~~v~~gG~~~~~~~~~~~~~~~~~~~p~~~~v~G~~~~ggPr~~~lspdGk 147 (222)
.||+|.=.... .++ ++ ....++. =++..-|.++.+.|.. . .....++. ...|-+ -|.-|+++|.-.
T Consensus 126 -~LYvs~G~~~~~~~~~-~~-~~~~G~i-lri~~dG~~p~dnP~~--~--~~~~~~~i-~A~GlR---N~~~~~~d~~tg 193 (331)
T PF07995_consen 126 -KLYVSVGDGGNDDNAQ-DP-NSLRGKI-LRIDPDGSIPADNPFV--G--DDGADSEI-YAYGLR---NPFGLAFDPNTG 193 (331)
T ss_dssp -EEEEEEB-TTTGGGGC-ST-TSSTTEE-EEEETTSSB-TTSTTT--T--STTSTTTE-EEE--S---EEEEEEEETTTT
T ss_pred -cEEEEeCCCCCccccc-cc-ccccceE-EEecccCcCCCCCccc--c--CCCceEEE-EEeCCC---ccccEEEECCCC
Confidence 99999743333 111 11 0123333 2444555544432110 0 00111121 223444 488999999955
Q ss_pred EEEEEe
Q 027522 148 RLYVTN 153 (222)
Q Consensus 148 ~LyvaN 153 (222)
.||+++
T Consensus 194 ~l~~~d 199 (331)
T PF07995_consen 194 RLWAAD 199 (331)
T ss_dssp EEEEEE
T ss_pred cEEEEc
Confidence 688886
No 95
>KOG0772 consensus Uncharacterized conserved protein, contains WD40 repeat [Function unknown]
Probab=93.83 E-value=0.26 Score=49.06 Aligned_cols=72 Identities=15% Similarity=0.213 Sum_probs=54.2
Q ss_pred EEcCCCCeEEEEeccCceEEEEEeCCCCCeeEEEEEEecCcccccccCCCCCCceeEEEEcCCCCEEEEEeCCCCcEEEE
Q 027522 6 LHDPSKDIGFVGCALASTMVRFSKTQDGSWNHEVAISVKSLKVQNWILPEMPGLITDFLISLDDRFLYFSNWLHGDIRQY 85 (222)
Q Consensus 6 afhP~g~~aYvv~ELsstV~~~~~d~~g~~~~~q~is~~p~~~~g~~~~~~~~~~adI~iSpDgrfLYvSnRgh~sI~vf 85 (222)
.|||..+--|+.|..++|+-.|.-+ ......|||-..++. |.. -.++-+..++||+.+-+.| +.|+|..|
T Consensus 275 ~whP~~k~~FlT~s~DgtlRiWdv~--~~k~q~qVik~k~~~--g~R-----v~~tsC~~nrdg~~iAagc-~DGSIQ~W 344 (641)
T KOG0772|consen 275 CWHPDNKEEFLTCSYDGTLRIWDVN--NTKSQLQVIKTKPAG--GKR-----VPVTSCAWNRDGKLIAAGC-LDGSIQIW 344 (641)
T ss_pred ccccCcccceEEecCCCcEEEEecC--CchhheeEEeeccCC--Ccc-----cCceeeecCCCcchhhhcc-cCCceeee
Confidence 4899999999999999999888764 234556777554432 321 2358899999999955544 89999999
Q ss_pred Ee
Q 027522 86 NI 87 (222)
Q Consensus 86 ~i 87 (222)
+.
T Consensus 345 ~~ 346 (641)
T KOG0772|consen 345 DK 346 (641)
T ss_pred ec
Confidence 76
No 96
>KOG2315 consensus Predicted translation initiation factor related to eIF-3a [Translation, ribosomal structure and biogenesis]
Probab=93.72 E-value=0.91 Score=45.25 Aligned_cols=95 Identities=11% Similarity=0.188 Sum_probs=64.3
Q ss_pred EEEcCCCCe-EEEEeccCceEEEEEeCCCCCeeEEEEEEecCcccccccCCCCCCceeEEEEcCCCCEEEEEeCC--CCc
Q 027522 5 FLHDPSKDI-GFVGCALASTMVRFSKTQDGSWNHEVAISVKSLKVQNWILPEMPGLITDFLISLDDRFLYFSNWL--HGD 81 (222)
Q Consensus 5 ~afhP~g~~-aYvv~ELsstV~~~~~d~~g~~~~~q~is~~p~~~~g~~~~~~~~~~adI~iSpDgrfLYvSnRg--h~s 81 (222)
+.++|+++. +-|-.=+-++|+.|..+.+ -+..+++.+ . -++..||-|+.|-++..| .|+
T Consensus 276 v~W~~s~~EF~VvyGfMPAkvtifnlr~~------~v~df~egp-R-----------N~~~fnp~g~ii~lAGFGNL~G~ 337 (566)
T KOG2315|consen 276 VTWSPSGREFAVVYGFMPAKVTIFNLRGK------PVFDFPEGP-R-----------NTAFFNPHGNIILLAGFGNLPGD 337 (566)
T ss_pred EEECCCCCEEEEEEecccceEEEEcCCCC------EeEeCCCCC-c-----------cceEECCCCCEEEEeecCCCCCc
Confidence 356777643 3333447777777765321 233444322 1 368899999999999996 699
Q ss_pred EEEEEecCCCCCeEEEEEEecceeecCCceeeeeCCCCCCCCCCccccCcccCCCCeeEEECCCCCEEEEEe
Q 027522 82 IRQYNIEDPKNPVLTGQIWVGGLFRKGSPVVAVTDDGQPYQSDVPEVQGHRLRGGPQMIQLSLDGKRLYVTN 153 (222)
Q Consensus 82 I~vf~i~d~~~~~L~~~v~~gG~~~~~~~~~~~~~~~~~~~p~~~~v~G~~~~ggPr~~~lspdGk~LyvaN 153 (222)
|.+||+.+ -++++++..-+ ---|..+|||+|++.|.
T Consensus 338 mEvwDv~n---~K~i~~~~a~~---------------------------------tt~~eW~PdGe~flTAT 373 (566)
T KOG2315|consen 338 MEVWDVPN---RKLIAKFKAAN---------------------------------TTVFEWSPDGEYFLTAT 373 (566)
T ss_pred eEEEeccc---hhhccccccCC---------------------------------ceEEEEcCCCcEEEEEe
Confidence 99999954 56666555421 23689999999999886
No 97
>PF09826 Beta_propel: Beta propeller domain; InterPro: IPR019198 This entry consists of predicted secreted proteins containing a C-terminal beta-propeller domain distantly related to WD-40 repeats.
Probab=93.69 E-value=1.2 Score=44.03 Aligned_cols=81 Identities=17% Similarity=0.251 Sum_probs=54.9
Q ss_pred CCCeEEEEeccCceEEEEEeCCCCCeeEEEEEEecCcccccccCCCCCCceeEEEEcCCCCEEEEEeC------------
Q 027522 10 SKDIGFVGCALASTMVRFSKTQDGSWNHEVAISVKSLKVQNWILPEMPGLITDFLISLDDRFLYFSNW------------ 77 (222)
Q Consensus 10 ~g~~aYvv~ELsstV~~~~~d~~g~~~~~q~is~~p~~~~g~~~~~~~~~~adI~iSpDgrfLYvSnR------------ 77 (222)
||+++|+++ ++.|.++.-....+.+....|.+... +.+|-| .++|.+-+++.
T Consensus 21 DG~yIY~v~--~~~l~Iida~p~~~~~~~s~I~~~~~-------------~~eLyl-~gdrLvVi~~~~~~~~~~~~~~~ 84 (521)
T PF09826_consen 21 DGEYIYVVS--GGRLYIIDAYPAEEMKVVSRIDLDGS-------------PQELYL-DGDRLVVIGSSYEYYPREPDIDS 84 (521)
T ss_pred CCCEEEEEe--CCEEEEEECCCchhceEEEEEecCCC-------------hhheEE-cCCEEEEEEeccccccccccccc
Confidence 799999999 68888886532345666666655421 355666 23344433322
Q ss_pred -----------CCCcEEEEEecCCCCCeEEEEEEecceee
Q 027522 78 -----------LHGDIRQYNIEDPKNPVLTGQIWVGGLFR 106 (222)
Q Consensus 78 -----------gh~sI~vf~i~d~~~~~L~~~v~~gG~~~ 106 (222)
..-.|.+|||+|+.+|++++++..-|.+-
T Consensus 85 ~~~~~~~~~~~~~t~i~vYDIsD~~~P~~~~~~~~~G~yv 124 (521)
T PF09826_consen 85 ESGDTPYYYYKSSTKITVYDISDPSNPKLLREIEIEGSYV 124 (521)
T ss_pred cccccccccCCceeEEEEEECCCCCCceEEEEEEeeeEEE
Confidence 23468999999999999999999877653
No 98
>TIGR02276 beta_rpt_yvtn 40-residue YVTN family beta-propeller repeat. This repeat of about 40 amino acids is found in up to 14 copies per protein. Archaea Methanosarcina mazei and Methanosarcina acetivorans each have over 10 genes that encode tandem copies of this repeat, which is also found in other species. PSIPRED predicts with high confidence that each 40-residue repeats contains four beta strands. This model overlaps somewhat with the NHL repeat (Pfam pfam01436) and also shows sequence similarity to the WD domain, G-beta repeat (Pfam pfam00400).
Probab=93.48 E-value=0.42 Score=29.81 Aligned_cols=32 Identities=16% Similarity=0.113 Sum_probs=24.5
Q ss_pred CCCCeEEEEeccCceEEEEEeCCCCCeeEEEEEEe
Q 027522 9 PSKDIGFVGCALASTMVRFSKTQDGSWNHEVAISV 43 (222)
Q Consensus 9 P~g~~aYvv~ELsstV~~~~~d~~g~~~~~q~is~ 43 (222)
|+++++||.|+-+++|.++... +.+....+.+
T Consensus 1 pd~~~lyv~~~~~~~v~~id~~---~~~~~~~i~v 32 (42)
T TIGR02276 1 PDGTKLYVTNSGSNTVSVIDTA---TNKVIATIPV 32 (42)
T ss_pred CCCCEEEEEeCCCCEEEEEECC---CCeEEEEEEC
Confidence 7899999999999999998652 3444555554
No 99
>COG0823 TolB Periplasmic component of the Tol biopolymer transport system [Intracellular trafficking and secretion]
Probab=93.48 E-value=1.3 Score=42.62 Aligned_cols=100 Identities=15% Similarity=0.062 Sum_probs=56.6
Q ss_pred EEEcCCCCeEEEEeccCceEEEEEeCCCCCeeEEEEEEecCcccccccCCCCCCceeEEEEcCCCCEEE-EEeCC-CCcE
Q 027522 5 FLHDPSKDIGFVGCALASTMVRFSKTQDGSWNHEVAISVKSLKVQNWILPEMPGLITDFLISLDDRFLY-FSNWL-HGDI 82 (222)
Q Consensus 5 ~afhP~g~~aYvv~ELsstV~~~~~d~~g~~~~~q~is~~p~~~~g~~~~~~~~~~adI~iSpDgrfLY-vSnRg-h~sI 82 (222)
..|+|+|+.+-...+=+...-.|-++.+++- ...++-. . +....=.+||||+++| +|.|+ +=.|
T Consensus 243 P~fspDG~~l~f~~~rdg~~~iy~~dl~~~~--~~~Lt~~----~--------gi~~~Ps~spdG~~ivf~Sdr~G~p~I 308 (425)
T COG0823 243 PAFSPDGSKLAFSSSRDGSPDIYLMDLDGKN--LPRLTNG----F--------GINTSPSWSPDGSKIVFTSDRGGRPQI 308 (425)
T ss_pred ccCCCCCCEEEEEECCCCCccEEEEcCCCCc--ceecccC----C--------ccccCccCCCCCCEEEEEeCCCCCcce
Confidence 4689999888887776666555555533322 1111111 1 1123456899999987 66663 3444
Q ss_pred EEEEecCCCCCeEEEEEEecceeecCCceeeeeCCCCCCCCCCccccCcccCCCCeeEEECCCCCEEEEEe
Q 027522 83 RQYNIEDPKNPVLTGQIWVGGLFRKGSPVVAVTDDGQPYQSDVPEVQGHRLRGGPQMIQLSLDGKRLYVTN 153 (222)
Q Consensus 83 ~vf~i~d~~~~~L~~~v~~gG~~~~~~~~~~~~~~~~~~~p~~~~v~G~~~~ggPr~~~lspdGk~LyvaN 153 (222)
.+++.+ + . -+.++...+ .. ...=..||||+++...+
T Consensus 309 ~~~~~~--g-~-~~~riT~~~---------------------------~~----~~~p~~SpdG~~i~~~~ 344 (425)
T COG0823 309 YLYDLE--G-S-QVTRLTFSG---------------------------GG----NSNPVWSPDGDKIVFES 344 (425)
T ss_pred EEECCC--C-C-ceeEeeccC---------------------------CC----CcCccCCCCCCEEEEEe
Confidence 444442 1 1 123333321 11 22457899999999998
No 100
>PF05096 Glu_cyclase_2: Glutamine cyclotransferase; InterPro: IPR007788 This family of enzymes 2.3.2.5 from EC catalyse the cyclization of free L-glutamine and N-terminal glutaminyl residues in proteins to pyroglutamate (5-oxoproline) and pyroglutamyl residues respectively []. This family includes plant and bacterial enzymes and seems unrelated to the mammalian enzymes.; PDB: 3NOK_B 2FAW_A 2IWA_A 3NOM_A 3NOL_A 3MBR_X.
Probab=93.36 E-value=2 Score=39.17 Aligned_cols=68 Identities=18% Similarity=0.159 Sum_probs=38.0
Q ss_pred CeEEEEeccCceEEEEEeCCCCCeeEEEEEEecCcccccccCCCCCCceeEEEEcCCCCEEEEEeCCCCcEEEEEecCCC
Q 027522 12 DIGFVGCALASTMVRFSKTQDGSWNHEVAISVKSLKVQNWILPEMPGLITDFLISLDDRFLYFSNWLHGDIRQYNIEDPK 91 (222)
Q Consensus 12 ~~aYvv~ELsstV~~~~~d~~g~~~~~q~is~~p~~~~g~~~~~~~~~~adI~iSpDgrfLYvSnRgh~sI~vf~i~d~~ 91 (222)
..+|.+.=-+.+.++|.. .+++....++.+. +|| +++ .||+.||+|+ |.+.|..+ ||.
T Consensus 100 d~l~qLTWk~~~~f~yd~---~tl~~~~~~~y~~---EGW------GLt------~dg~~Li~SD-GS~~L~~~---dP~ 157 (264)
T PF05096_consen 100 DKLYQLTWKEGTGFVYDP---NTLKKIGTFPYPG---EGW------GLT------SDGKRLIMSD-GSSRLYFL---DPE 157 (264)
T ss_dssp TEEEEEESSSSEEEEEET---TTTEEEEEEE-SS---S--------EEE------ECSSCEEEE--SSSEEEEE----TT
T ss_pred CEEEEEEecCCeEEEEcc---ccceEEEEEecCC---cce------EEE------cCCCEEEEEC-CccceEEE---CCc
Confidence 344444444455555543 2577777776653 677 222 8999999998 46666555 566
Q ss_pred CCeEEEEEEe
Q 027522 92 NPVLTGQIWV 101 (222)
Q Consensus 92 ~~~L~~~v~~ 101 (222)
+-+.+++|.+
T Consensus 158 ~f~~~~~i~V 167 (264)
T PF05096_consen 158 TFKEVRTIQV 167 (264)
T ss_dssp T-SEEEEEE-
T ss_pred ccceEEEEEE
Confidence 6777777766
No 101
>KOG0771 consensus Prolactin regulatory element-binding protein/Protein transport protein SEC12p [Intracellular trafficking, secretion, and vesicular transport]
Probab=93.34 E-value=1.5 Score=42.28 Aligned_cols=31 Identities=23% Similarity=0.454 Sum_probs=26.7
Q ss_pred CceeEEEEcCCCCEEEEEeCCCCcEEEEEecC
Q 027522 58 GLITDFLISLDDRFLYFSNWLHGDIRQYNIED 89 (222)
Q Consensus 58 ~~~adI~iSpDgrfLYvSnRgh~sI~vf~i~d 89 (222)
+.++.+.+|+|||||-+..- .|+|++|+...
T Consensus 282 ~siSsl~VS~dGkf~AlGT~-dGsVai~~~~~ 312 (398)
T KOG0771|consen 282 KSISSLAVSDDGKFLALGTM-DGSVAIYDAKS 312 (398)
T ss_pred CcceeEEEcCCCcEEEEecc-CCcEEEEEece
Confidence 46799999999999998875 99999998743
No 102
>PF03088 Str_synth: Strictosidine synthase; InterPro: IPR018119 This entry represents a conserved region found in strictosidine synthase (4.3.3.2 from EC), a key enzyme in alkaloid biosynthesis. It catalyses the Pictet-Spengler stereospecific condensation of tryptamine with secologanin to form strictosidine []. The structure of the native enzyme from the Indian medicinal plant Rauvolfia serpentina (Serpentwood) (Devilpepper) represents the first example of a six-bladed four-stranded beta-propeller fold from the plant kingdom [].; GO: 0016844 strictosidine synthase activity, 0009058 biosynthetic process; PDB: 2FPB_A 2V91_B 2FP8_A 3V1S_B 2FPC_A 2VAQ_A 2FP9_B.
Probab=93.27 E-value=0.24 Score=38.05 Aligned_cols=18 Identities=28% Similarity=0.259 Sum_probs=15.7
Q ss_pred CCeeEEECCCCCEEEEEe
Q 027522 136 GPQMIQLSLDGKRLYVTN 153 (222)
Q Consensus 136 gPr~~~lspdGk~LyvaN 153 (222)
.|+-++||+||.+|+||=
T Consensus 58 fpNGVals~d~~~vlv~E 75 (89)
T PF03088_consen 58 FPNGVALSPDESFVLVAE 75 (89)
T ss_dssp SEEEEEE-TTSSEEEEEE
T ss_pred ccCeEEEcCCCCEEEEEe
Confidence 399999999999999996
No 103
>KOG0318 consensus WD40 repeat stress protein/actin interacting protein [Cytoskeleton]
Probab=93.17 E-value=2.5 Score=42.25 Aligned_cols=61 Identities=16% Similarity=0.181 Sum_probs=43.2
Q ss_pred eeEEEEcCCCCEEEEEeCCCCcEEEEEecCCCCCeEEEEEEecceeecCCceeeeeCCCCCCCCCCccccCcccCCCCee
Q 027522 60 ITDFLISLDDRFLYFSNWLHGDIRQYNIEDPKNPVLTGQIWVGGLFRKGSPVVAVTDDGQPYQSDVPEVQGHRLRGGPQM 139 (222)
Q Consensus 60 ~adI~iSpDgrfLYvSnRgh~sI~vf~i~d~~~~~L~~~v~~gG~~~~~~~~~~~~~~~~~~~p~~~~v~G~~~~ggPr~ 139 (222)
++.+++|||+.++-|-.- ++.|.+|.+... .|...... ...+|-+-.
T Consensus 446 ~s~vAv~~~~~~vaVGG~-Dgkvhvysl~g~---~l~ee~~~-----------------------------~~h~a~iT~ 492 (603)
T KOG0318|consen 446 SSAVAVSPDGSEVAVGGQ-DGKVHVYSLSGD---ELKEEAKL-----------------------------LEHRAAITD 492 (603)
T ss_pred cceEEEcCCCCEEEEecc-cceEEEEEecCC---cccceeee-----------------------------ecccCCceE
Confidence 488999999999988763 566999999652 22111111 112334789
Q ss_pred EEECCCCCEEEEEe
Q 027522 140 IQLSLDGKRLYVTN 153 (222)
Q Consensus 140 ~~lspdGk~LyvaN 153 (222)
+++||||++|.++.
T Consensus 493 vaySpd~~yla~~D 506 (603)
T KOG0318|consen 493 VAYSPDGAYLAAGD 506 (603)
T ss_pred EEECCCCcEEEEec
Confidence 99999999999887
No 104
>KOG1274 consensus WD40 repeat protein [General function prediction only]
Probab=93.02 E-value=1.4 Score=46.29 Aligned_cols=115 Identities=13% Similarity=0.139 Sum_probs=67.7
Q ss_pred EEEcCCCCeEEEEeccCceEEEEEeCCCCCeeEEEEEEecCcccccccCCCCCCceeEEEEcCC-CCEEEEEeCCCCcEE
Q 027522 5 FLHDPSKDIGFVGCALASTMVRFSKTQDGSWNHEVAISVKSLKVQNWILPEMPGLITDFLISLD-DRFLYFSNWLHGDIR 83 (222)
Q Consensus 5 ~afhP~g~~aYvv~ELsstV~~~~~d~~g~~~~~q~is~~p~~~~g~~~~~~~~~~adI~iSpD-grfLYvSnRgh~sI~ 83 (222)
+-|||+++++-|.. -+++|.+|..+ ++.+ ..+++-.++..+ ... ...+.-.+-||+ |.||.++. .++|.
T Consensus 144 l~~~p~~~fLAvss-~dG~v~iw~~~-~~~~--~~tl~~v~k~n~-~~~---s~i~~~~aW~Pk~g~la~~~~--d~~Vk 213 (933)
T KOG1274|consen 144 LSYDPKGNFLAVSS-CDGKVQIWDLQ-DGIL--SKTLTGVDKDNE-FIL---SRICTRLAWHPKGGTLAVPPV--DNTVK 213 (933)
T ss_pred eeEcCCCCEEEEEe-cCceEEEEEcc-cchh--hhhcccCCcccc-ccc---cceeeeeeecCCCCeEEeecc--CCeEE
Confidence 56899999887765 47888888764 3332 223322222222 111 144678889999 66666665 57899
Q ss_pred EEEecCC-CCCeEEEEEEecceeecCCceeeeeCCCCCCCCCCccccCcccCCCCeeEEECCCCCEEEEE--eCCCCccc
Q 027522 84 QYNIEDP-KNPVLTGQIWVGGLFRKGSPVVAVTDDGQPYQSDVPEVQGHRLRGGPQMIQLSLDGKRLYVT--NSLFSAWD 160 (222)
Q Consensus 84 vf~i~d~-~~~~L~~~v~~gG~~~~~~~~~~~~~~~~~~~p~~~~v~G~~~~ggPr~~~lspdGk~Lyva--Nsl~~~wd 160 (222)
+|+..+= ...+|. ++.+...=-.+++||.|+||-+. |....-||
T Consensus 214 vy~r~~we~~f~Lr---------------------------------~~~~ss~~~~~~wsPnG~YiAAs~~~g~I~vWn 260 (933)
T KOG1274|consen 214 VYSRKGWELQFKLR---------------------------------DKLSSSKFSDLQWSPNGKYIAASTLDGQILVWN 260 (933)
T ss_pred EEccCCceeheeec---------------------------------ccccccceEEEEEcCCCcEEeeeccCCcEEEEe
Confidence 9988541 111221 11222223478999999999766 33444455
Q ss_pred cc
Q 027522 161 CQ 162 (222)
Q Consensus 161 ~Q 162 (222)
-|
T Consensus 261 v~ 262 (933)
T KOG1274|consen 261 VD 262 (933)
T ss_pred cc
Confidence 55
No 105
>KOG2055 consensus WD40 repeat protein [General function prediction only]
Probab=92.99 E-value=0.98 Score=44.36 Aligned_cols=68 Identities=13% Similarity=0.068 Sum_probs=46.0
Q ss_pred EEEcCCCCeEEEEeccCceEEEEEeCCCCCeeEEEEEEecCcccccccCCCCCCceeEEEEcCCCCEEEEEeCCCCcEEE
Q 027522 5 FLHDPSKDIGFVGCALASTMVRFSKTQDGSWNHEVAISVKSLKVQNWILPEMPGLITDFLISLDDRFLYFSNWLHGDIRQ 84 (222)
Q Consensus 5 ~afhP~g~~aYvv~ELsstV~~~~~d~~g~~~~~q~is~~p~~~~g~~~~~~~~~~adI~iSpDgrfLYvSnRgh~sI~v 84 (222)
|+|+-+++.+++.|+-+ .|++|..... ..+.... .+|. -..+.|.+|++|+|| ++.--.|-|-+
T Consensus 350 ~~fsSdsk~l~~~~~~G-eV~v~nl~~~---~~~~rf~-----D~G~------v~gts~~~S~ng~yl-A~GS~~GiVNI 413 (514)
T KOG2055|consen 350 FTFSSDSKELLASGGTG-EVYVWNLRQN---SCLHRFV-----DDGS------VHGTSLCISLNGSYL-ATGSDSGIVNI 413 (514)
T ss_pred EEEecCCcEEEEEcCCc-eEEEEecCCc---ceEEEEe-----ecCc------cceeeeeecCCCceE-EeccCcceEEE
Confidence 78999999999999954 9999977532 1111111 0222 235899999999955 45445677888
Q ss_pred EEec
Q 027522 85 YNIE 88 (222)
Q Consensus 85 f~i~ 88 (222)
|+-.
T Consensus 414 Yd~~ 417 (514)
T KOG2055|consen 414 YDGN 417 (514)
T ss_pred eccc
Confidence 8853
No 106
>KOG0275 consensus Conserved WD40 repeat-containing protein [General function prediction only]
Probab=92.96 E-value=3.2 Score=39.72 Aligned_cols=118 Identities=11% Similarity=0.091 Sum_probs=67.8
Q ss_pred EEcCCCCeEEEEeccCceEEEEEeCCCCCeeEEEEEEecCcccccccCCCCCCceeEEEEcCCCCEEEEEeCCCCcEEEE
Q 027522 6 LHDPSKDIGFVGCALASTMVRFSKTQDGSWNHEVAISVKSLKVQNWILPEMPGLITDFLISLDDRFLYFSNWLHGDIRQY 85 (222)
Q Consensus 6 afhP~g~~aYvv~ELsstV~~~~~d~~g~~~~~q~is~~p~~~~g~~~~~~~~~~adI~iSpDgrfLYvSnRgh~sI~vf 85 (222)
.|.++|.++-.. --+.||-+|+.... +-.++...++.++ +..+-|.+-.+-....|||| .++|.+.
T Consensus 355 ~ft~dG~~iisa-SsDgtvkvW~~Ktt---eC~~Tfk~~~~d~---------~vnsv~~~PKnpeh~iVCNr-sntv~im 420 (508)
T KOG0275|consen 355 TFTDDGHHIISA-SSDGTVKVWHGKTT---ECLSTFKPLGTDY---------PVNSVILLPKNPEHFIVCNR-SNTVYIM 420 (508)
T ss_pred EEcCCCCeEEEe-cCCccEEEecCcch---hhhhhccCCCCcc---------cceeEEEcCCCCceEEEEcC-CCeEEEE
Confidence 578888876443 34677888764211 1112222222111 12244555556667779998 5677777
Q ss_pred EecCCCCCeEEEEEEecceeecCCceeeeeCCCCCCCCCCccccCcccCCCCeeEEECCCCCEEEEEeCCCCcccccccc
Q 027522 86 NIEDPKNPVLTGQIWVGGLFRKGSPVVAVTDDGQPYQSDVPEVQGHRLRGGPQMIQLSLDGKRLYVTNSLFSAWDCQFYP 165 (222)
Q Consensus 86 ~i~d~~~~~L~~~v~~gG~~~~~~~~~~~~~~~~~~~p~~~~v~G~~~~ggPr~~~lspdGk~LyvaNsl~~~wd~Q~yp 165 (222)
.++ +..+...+. |++--|.==+-+|||.|.|+|+.- +
T Consensus 421 n~q----GQvVrsfsS----------------------------GkREgGdFi~~~lSpkGewiYcig--------E--- 457 (508)
T KOG0275|consen 421 NMQ----GQVVRSFSS----------------------------GKREGGDFINAILSPKGEWIYCIG--------E--- 457 (508)
T ss_pred ecc----ceEEeeecc----------------------------CCccCCceEEEEecCCCcEEEEEc--------c---
Confidence 663 445444444 222111134568999999999997 3
Q ss_pred ccccCCcEEEEEEeeCCCCCee
Q 027522 166 ELKEKGSHMLQIDVNSEKGGMA 187 (222)
Q Consensus 166 ~~~s~~~~i~~~dvd~~~G~l~ 187 (222)
...++-+.+ .+|+|+
T Consensus 458 -----D~vlYCF~~--~sG~LE 472 (508)
T KOG0275|consen 458 -----DGVLYCFSV--LSGKLE 472 (508)
T ss_pred -----CcEEEEEEe--ecCcee
Confidence 456777755 789884
No 107
>KOG0271 consensus Notchless-like WD40 repeat-containing protein [Function unknown]
Probab=92.83 E-value=0.33 Score=46.88 Aligned_cols=73 Identities=16% Similarity=0.262 Sum_probs=51.3
Q ss_pred eEEEEcCCCCEEEEEeCCCCcEEEEEecCCCCCeEEEEEEecceeecCCceeeeeCCCCCCCCCCccccCcccCCCCeeE
Q 027522 61 TDFLISLDDRFLYFSNWLHGDIRQYNIEDPKNPVLTGQIWVGGLFRKGSPVVAVTDDGQPYQSDVPEVQGHRLRGGPQMI 140 (222)
Q Consensus 61 adI~iSpDgrfLYvSnRgh~sI~vf~i~d~~~~~L~~~v~~gG~~~~~~~~~~~~~~~~~~~p~~~~v~G~~~~ggPr~~ 140 (222)
--..+||||+.| ||.-|+.+++.||++ ..+|.. .+ +|.. -+-..+
T Consensus 119 l~~~fsp~g~~l-~tGsGD~TvR~WD~~-TeTp~~----t~---------------------------KgH~--~WVlcv 163 (480)
T KOG0271|consen 119 LSVQFSPTGSRL-VTGSGDTTVRLWDLD-TETPLF----TC---------------------------KGHK--NWVLCV 163 (480)
T ss_pred EEEEecCCCceE-EecCCCceEEeeccC-CCCcce----ee---------------------------cCCc--cEEEEE
Confidence 456799999999 888899999999994 455544 11 1221 136788
Q ss_pred EECCCCCEEEEEeCCCCccccccccccccCCcEEEEEEeeCCCCCe
Q 027522 141 QLSLDGKRLYVTNSLFSAWDCQFYPELKEKGSHMLQIDVNSEKGGM 186 (222)
Q Consensus 141 ~lspdGk~LyvaNsl~~~wd~Q~yp~~~s~~~~i~~~dvd~~~G~l 186 (222)
+.||||++|.-.. .+.+|... ||.+|+.
T Consensus 164 awsPDgk~iASG~----------------~dg~I~lw--dpktg~~ 191 (480)
T KOG0271|consen 164 AWSPDGKKIASGS----------------KDGSIRLW--DPKTGQQ 191 (480)
T ss_pred EECCCcchhhccc----------------cCCeEEEe--cCCCCCc
Confidence 9999999986654 34555555 6677764
No 108
>KOG0973 consensus Histone transcription regulator HIRA, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning; Transcription]
Probab=92.75 E-value=0.72 Score=48.58 Aligned_cols=105 Identities=11% Similarity=0.114 Sum_probs=65.9
Q ss_pred EEEcCCCCeEEEEeccCceEEEEEeCCCCCeeEEEEEEecCcccccccCCCCCCceeEEEEcCCCCEEEEEeCCCCcEEE
Q 027522 5 FLHDPSKDIGFVGCALASTMVRFSKTQDGSWNHEVAISVKSLKVQNWILPEMPGLITDFLISLDDRFLYFSNWLHGDIRQ 84 (222)
Q Consensus 5 ~afhP~g~~aYvv~ELsstV~~~~~d~~g~~~~~q~is~~p~~~~g~~~~~~~~~~adI~iSpDgrfLYvSnRgh~sI~v 84 (222)
+.++|++.+ .|.++++++|.+|.-. +|...+++.--. ...-.+.+.|=|||+ +|--.+.+|.+
T Consensus 135 v~Wsp~~~~-lvS~s~DnsViiwn~~---tF~~~~vl~~H~------------s~VKGvs~DP~Gky~-ASqsdDrtikv 197 (942)
T KOG0973|consen 135 VNWSPDDSL-LVSVSLDNSVIIWNAK---TFELLKVLRGHQ------------SLVKGVSWDPIGKYF-ASQSDDRTLKV 197 (942)
T ss_pred eccCCCccE-EEEecccceEEEEccc---cceeeeeeeccc------------ccccceEECCccCee-eeecCCceEEE
Confidence 467886654 6788999999999642 344444432211 234567899999998 66667889999
Q ss_pred EEecCCCCCeEEEEEEecceeecCCceeeeeCCCCCCCCCCccccCcccCCCCeeEEECCCCCEEEEEeC
Q 027522 85 YNIEDPKNPVLTGQIWVGGLFRKGSPVVAVTDDGQPYQSDVPEVQGHRLRGGPQMIQLSLDGKRLYVTNS 154 (222)
Q Consensus 85 f~i~d~~~~~L~~~v~~gG~~~~~~~~~~~~~~~~~~~p~~~~v~G~~~~ggPr~~~lspdGk~LyvaNs 154 (222)
|++.+=+ +.-.|.- |........+ =|-+..||||++|-++||
T Consensus 198 wrt~dw~---i~k~It~---------------------pf~~~~~~T~----f~RlSWSPDG~~las~nA 239 (942)
T KOG0973|consen 198 WRTSDWG---IEKSITK---------------------PFEESPLTTF----FLRLSWSPDGHHLASPNA 239 (942)
T ss_pred EEcccce---eeEeecc---------------------chhhCCCcce----eeecccCCCcCeecchhh
Confidence 9986511 1111110 1111111222 456778999999999995
No 109
>KOG4378 consensus Nuclear protein COP1 [Signal transduction mechanisms]
Probab=92.59 E-value=1.1 Score=44.70 Aligned_cols=101 Identities=19% Similarity=0.156 Sum_probs=71.3
Q ss_pred EeE-EEcCCCCeEEEEeccCceEEEEEeCCC-CCeeEEEEEEecCcccccccCCCCCCceeEEEEcCCCCEEEEEeCCCC
Q 027522 3 IRF-LHDPSKDIGFVGCALASTMVRFSKTQD-GSWNHEVAISVKSLKVQNWILPEMPGLITDFLISLDDRFLYFSNWLHG 80 (222)
Q Consensus 3 vr~-afhP~g~~aYvv~ELsstV~~~~~d~~-g~~~~~q~is~~p~~~~g~~~~~~~~~~adI~iSpDgrfLYvSnRgh~ 80 (222)
||+ -|||..++.-++.-=..+|++|.-... -.+.+.++-+ +-+++|.+||-.--|.||--.+-
T Consensus 167 vRll~ys~skr~lL~~asd~G~VtlwDv~g~sp~~~~~~~Hs---------------AP~~gicfspsne~l~vsVG~Dk 231 (673)
T KOG4378|consen 167 VRLLRYSPSKRFLLSIASDKGAVTLWDVQGMSPIFHASEAHS---------------APCRGICFSPSNEALLVSVGYDK 231 (673)
T ss_pred EEEeecccccceeeEeeccCCeEEEEeccCCCcccchhhhcc---------------CCcCcceecCCccceEEEecccc
Confidence 554 489999999998888888998865321 1122112111 33589999999999999999899
Q ss_pred cEEEEEecCCCCCeEEEEEEecceeecCCceeeeeCCCCCCCCCCccccCcccCCCC-eeEEECCCCCEEEEEeC
Q 027522 81 DIRQYNIEDPKNPVLTGQIWVGGLFRKGSPVVAVTDDGQPYQSDVPEVQGHRLRGGP-QMIQLSLDGKRLYVTNS 154 (222)
Q Consensus 81 sI~vf~i~d~~~~~L~~~v~~gG~~~~~~~~~~~~~~~~~~~p~~~~v~G~~~~ggP-r~~~lspdGk~LyvaNs 154 (222)
.|-.||+.. .+++..+.. .+ | -.++|+++|.+|.+.||
T Consensus 232 ki~~yD~~s---~~s~~~l~y-----------------------------~~----Plstvaf~~~G~~L~aG~s 270 (673)
T KOG4378|consen 232 KINIYDIRS---QASTDRLTY-----------------------------SH----PLSTVAFSECGTYLCAGNS 270 (673)
T ss_pred eEEEeeccc---ccccceeee-----------------------------cC----CcceeeecCCceEEEeecC
Confidence 999999953 334333332 01 3 56899999999999993
No 110
>PRK13616 lipoprotein LpqB; Provisional
Probab=92.56 E-value=2.9 Score=41.94 Aligned_cols=76 Identities=18% Similarity=0.195 Sum_probs=42.2
Q ss_pred eEEEcCCCCeEEEEeccCceEEEEEe-CCCCCeeEEEEEEecCcccccccCCCCCCceeEEEEcCCCCEEEEEeCCCCcE
Q 027522 4 RFLHDPSKDIGFVGCALASTMVRFSK-TQDGSWNHEVAISVKSLKVQNWILPEMPGLITDFLISLDDRFLYFSNWLHGDI 82 (222)
Q Consensus 4 r~afhP~g~~aYvv~ELsstV~~~~~-d~~g~~~~~q~is~~p~~~~g~~~~~~~~~~adI~iSpDgrfLYvSnRgh~sI 82 (222)
|..|+|+|++++++.. .+.+..+.. +..+.+....+ .. ++.....+..++++.+||||+.|.+... +.|
T Consensus 401 ~PsWspDG~~lw~v~d-g~~~~~v~~~~~~gql~~~~v-d~------ge~~~~~~g~Issl~wSpDG~RiA~i~~--g~v 470 (591)
T PRK13616 401 RPSWSLDADAVWVVVD-GNTVVRVIRDPATGQLARTPV-DA------SAVASRVPGPISELQLSRDGVRAAMIIG--GKV 470 (591)
T ss_pred CceECCCCCceEEEec-CcceEEEeccCCCceEEEEec-cC------chhhhccCCCcCeEEECCCCCEEEEEEC--CEE
Confidence 6789999887777754 334444433 23333322211 11 1100012255799999999999987663 456
Q ss_pred EEEEecC
Q 027522 83 RQYNIED 89 (222)
Q Consensus 83 ~vf~i~d 89 (222)
.+-.|..
T Consensus 471 ~Va~Vvr 477 (591)
T PRK13616 471 YLAVVEQ 477 (591)
T ss_pred EEEEEEe
Confidence 5544433
No 111
>KOG1446 consensus Histone H3 (Lys4) methyltransferase complex and RNA cleavage factor II complex, subunit SWD2 [RNA processing and modification; Chromatin structure and dynamics; Posttranslational modification, protein turnover, chaperones]
Probab=92.52 E-value=1.6 Score=40.70 Aligned_cols=69 Identities=19% Similarity=0.201 Sum_probs=49.0
Q ss_pred EEEcCCCCeEEEEeccCceEEEE-EeCCCCCeeEEEEEEecCcccccccCCCCCCceeEEEEcCCCCEEEEEeCCCCcEE
Q 027522 5 FLHDPSKDIGFVGCALASTMVRF-SKTQDGSWNHEVAISVKSLKVQNWILPEMPGLITDFLISLDDRFLYFSNWLHGDIR 83 (222)
Q Consensus 5 ~afhP~g~~aYvv~ELsstV~~~-~~d~~g~~~~~q~is~~p~~~~g~~~~~~~~~~adI~iSpDgrfLYvSnRgh~sI~ 83 (222)
+-|+|+||++-+..+ .+.+.++ .+ +|+ .++..+..|.. . +.+.+-..+||++|+..+. ..+.|.
T Consensus 193 l~FS~dGK~iLlsT~-~s~~~~lDAf--~G~--~~~tfs~~~~~---~------~~~~~a~ftPds~Fvl~gs-~dg~i~ 257 (311)
T KOG1446|consen 193 LEFSPDGKSILLSTN-ASFIYLLDAF--DGT--VKSTFSGYPNA---G------NLPLSATFTPDSKFVLSGS-DDGTIH 257 (311)
T ss_pred eEEcCCCCEEEEEeC-CCcEEEEEcc--CCc--EeeeEeeccCC---C------CcceeEEECCCCcEEEEec-CCCcEE
Confidence 469999999988877 4555555 33 354 45555655432 1 4457889999999996554 789999
Q ss_pred EEEec
Q 027522 84 QYNIE 88 (222)
Q Consensus 84 vf~i~ 88 (222)
+|++.
T Consensus 258 vw~~~ 262 (311)
T KOG1446|consen 258 VWNLE 262 (311)
T ss_pred EEEcC
Confidence 99994
No 112
>KOG0973 consensus Histone transcription regulator HIRA, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning; Transcription]
Probab=92.23 E-value=3.5 Score=43.64 Aligned_cols=70 Identities=20% Similarity=0.200 Sum_probs=49.6
Q ss_pred EcCCCCeEEEEeccCceEEEEEeCC------C----CCeeEE--EEEEecCcccccccCCCCCCceeEEEEcCCCCEEEE
Q 027522 7 HDPSKDIGFVGCALASTMVRFSKTQ------D----GSWNHE--VAISVKSLKVQNWILPEMPGLITDFLISLDDRFLYF 74 (222)
Q Consensus 7 fhP~g~~aYvv~ELsstV~~~~~d~------~----g~~~~~--q~is~~p~~~~g~~~~~~~~~~adI~iSpDgrfLYv 74 (222)
|+|||++++...| +.-|.++.+.+ - |.-.++ +.+.++... + +-..|+.=||||++| |
T Consensus 77 ~S~dG~~lAsGSD-D~~v~iW~~~~~~~~~~fgs~g~~~~vE~wk~~~~l~~H-~--------~DV~Dv~Wsp~~~~l-v 145 (942)
T KOG0973|consen 77 FSPDGSYLASGSD-DRLVMIWERAEIGSGTVFGSTGGAKNVESWKVVSILRGH-D--------SDVLDVNWSPDDSLL-V 145 (942)
T ss_pred ECCCCCeEeeccC-cceEEEeeecccCCcccccccccccccceeeEEEEEecC-C--------CccceeccCCCccEE-E
Confidence 7899999999999 57778887752 0 111111 233444221 1 456999999999998 8
Q ss_pred EeCCCCcEEEEEe
Q 027522 75 SNWLHGDIRQYNI 87 (222)
Q Consensus 75 SnRgh~sI~vf~i 87 (222)
|+-..++|.+|+-
T Consensus 146 S~s~DnsViiwn~ 158 (942)
T KOG0973|consen 146 SVSLDNSVIIWNA 158 (942)
T ss_pred EecccceEEEEcc
Confidence 8889999999976
No 113
>PF13449 Phytase-like: Esterase-like activity of phytase
Probab=92.12 E-value=9.2 Score=34.88 Aligned_cols=63 Identities=16% Similarity=0.142 Sum_probs=41.0
Q ss_pred EEcCCCCeEEEEeccC------ceEEEEEeCCCCCeeEEEEEEecCccc------ccccCCCCCCc-eeEEEEcCCCCEE
Q 027522 6 LHDPSKDIGFVGCALA------STMVRFSKTQDGSWNHEVAISVKSLKV------QNWILPEMPGL-ITDFLISLDDRFL 72 (222)
Q Consensus 6 afhP~g~~aYvv~ELs------stV~~~~~d~~g~~~~~q~is~~p~~~------~g~~~~~~~~~-~adI~iSpDgrfL 72 (222)
++ +....+||..|-. ..|.+|.. +|++ .+.+.+|+.-. .+. -+|. -=.|.++|||+.|
T Consensus 91 ~~-~~~g~~~is~E~~~~~~~~p~I~~~~~--~G~~--~~~~~vP~~~~~~~~~~~~~----~~N~G~E~la~~~dG~~l 161 (326)
T PF13449_consen 91 AV-PPDGSFWISSEGGRTGGIPPRIRRFDL--DGRV--IRRFPVPAAFLPDANGTSGR----RNNRGFEGLAVSPDGRTL 161 (326)
T ss_pred EE-ecCCCEEEEeCCccCCCCCCEEEEECC--CCcc--cceEccccccccccCccccc----cCCCCeEEEEECCCCCEE
Confidence 44 5566789999999 88988864 4666 44444443210 111 0122 3589999999999
Q ss_pred EEEeC
Q 027522 73 YFSNW 77 (222)
Q Consensus 73 YvSnR 77 (222)
|+..-
T Consensus 162 ~~~~E 166 (326)
T PF13449_consen 162 FAAME 166 (326)
T ss_pred EEEEC
Confidence 98875
No 114
>KOG2139 consensus WD40 repeat protein [General function prediction only]
Probab=91.88 E-value=2.8 Score=40.45 Aligned_cols=120 Identities=23% Similarity=0.282 Sum_probs=64.8
Q ss_pred EEEcCCCCeEEEEeccCceEEEEEeCCCCCeeEEEEEEecCcccccccCCCCCCceeEEEEcCCCCEEEEEeCCCCcEEE
Q 027522 5 FLHDPSKDIGFVGCALASTMVRFSKTQDGSWNHEVAISVKSLKVQNWILPEMPGLITDFLISLDDRFLYFSNWLHGDIRQ 84 (222)
Q Consensus 5 ~afhP~g~~aYvv~ELsstV~~~~~d~~g~~~~~q~is~~p~~~~g~~~~~~~~~~adI~iSpDgrfLYvSnRgh~sI~v 84 (222)
|.|+|+|.+.|...- ..++++-. ++-.|+-+.-+. .+ .....-.-||+||||..++- ++-++
T Consensus 244 LkwSPdgd~lfaAt~--davfrlw~-e~q~wt~erw~l-gs------------grvqtacWspcGsfLLf~~s--gsp~l 305 (445)
T KOG2139|consen 244 LKWSPDGDVLFAATC--DAVFRLWQ-ENQSWTKERWIL-GS------------GRVQTACWSPCGSFLLFACS--GSPRL 305 (445)
T ss_pred EEEcCCCCEEEEecc--cceeeeeh-hcccceecceec-cC------------CceeeeeecCCCCEEEEEEc--CCceE
Confidence 578999999887643 34554422 233555444332 22 22344467999999998885 45567
Q ss_pred EEecCCCCCeEEEEEEecceeecCCceeeeeCCCCCCCCCCccccCcccC-CCCeeEEECCCCCEEEEEe
Q 027522 85 YNIEDPKNPVLTGQIWVGGLFRKGSPVVAVTDDGQPYQSDVPEVQGHRLR-GGPQMIQLSLDGKRLYVTN 153 (222)
Q Consensus 85 f~i~d~~~~~L~~~v~~gG~~~~~~~~~~~~~~~~~~~p~~~~v~G~~~~-ggPr~~~lspdGk~LyvaN 153 (222)
|.+.-+++..+... .+++- .|..+- +.++....-|+++. |.++-|+.+|.|.||.|.=
T Consensus 306 ysl~f~~~~~~~~~--~~~~k----~~llia-----DL~e~ti~ag~~l~cgeaq~lawDpsGeyLav~f 364 (445)
T KOG2139|consen 306 YSLTFDGEDSVFLR--PQSIK----RVLLIA-----DLQEVTICAGQRLCCGEAQCLAWDPSGEYLAVIF 364 (445)
T ss_pred EEEeecCCCccccC--cccce----eeeeec-----cchhhhhhcCcccccCccceeeECCCCCEEEEEE
Confidence 77754332222110 11110 011111 11222222244443 3469999999999999874
No 115
>KOG0643 consensus Translation initiation factor 3, subunit i (eIF-3i)/TGF-beta receptor-interacting protein (TRIP-1) [Translation, ribosomal structure and biogenesis; Signal transduction mechanisms]
Probab=91.60 E-value=5.8 Score=36.99 Aligned_cols=126 Identities=14% Similarity=0.120 Sum_probs=75.3
Q ss_pred eEEEcCCCCeEEEEec----cCceEEEEEeCCCC----CeeEEEEEEecCcccccccCCCCCCceeEEEEcCCCCEEEEE
Q 027522 4 RFLHDPSKDIGFVGCA----LASTMVRFSKTQDG----SWNHEVAISVKSLKVQNWILPEMPGLITDFLISLDDRFLYFS 75 (222)
Q Consensus 4 r~afhP~g~~aYvv~E----LsstV~~~~~d~~g----~~~~~q~is~~p~~~~g~~~~~~~~~~adI~iSpDgrfLYvS 75 (222)
|.-|+++|+.+-+..+ -++.|.+|.-..+. .-+...+|.++. ..++-...+|-++|| ++
T Consensus 98 ~~~F~~~gn~~l~~tD~~mg~~~~v~~fdi~~~~~~~~s~ep~~kI~t~~------------skit~a~Wg~l~~~i-i~ 164 (327)
T KOG0643|consen 98 RVDFSFGGNLILASTDKQMGYTCFVSVFDIRDDSSDIDSEEPYLKIPTPD------------SKITSALWGPLGETI-IA 164 (327)
T ss_pred EEeeccCCcEEEEEehhhcCcceEEEEEEccCChhhhcccCceEEecCCc------------cceeeeeecccCCEE-EE
Confidence 5678999988888777 34557777543111 111122333321 345777899999999 55
Q ss_pred eCCCCcEEEEEecCCCCCeEEEEEEecceeecCCceeeeeCCCCCCCCCCccccCcccCCCCeeEEECCCCCEEEEEeCC
Q 027522 76 NWLHGDIRQYNIEDPKNPVLTGQIWVGGLFRKGSPVVAVTDDGQPYQSDVPEVQGHRLRGGPQMIQLSLDGKRLYVTNSL 155 (222)
Q Consensus 76 nRgh~sI~vf~i~d~~~~~L~~~v~~gG~~~~~~~~~~~~~~~~~~~p~~~~v~G~~~~ggPr~~~lspdGk~LyvaNsl 155 (222)
+--.++|++|++.. ..+++...... ++. =.+||+|||..+.+-+.
T Consensus 165 Ghe~G~is~~da~~--g~~~v~s~~~h---------------------------~~~----Ind~q~s~d~T~FiT~s-- 209 (327)
T KOG0643|consen 165 GHEDGSISIYDART--GKELVDSDEEH---------------------------SSK----INDLQFSRDRTYFITGS-- 209 (327)
T ss_pred ecCCCcEEEEEccc--Cceeeechhhh---------------------------ccc----cccccccCCcceEEecc--
Confidence 55679999999843 13343222211 122 67899999998766554
Q ss_pred CCccccccccccccCCcEEEEEEeeCCCCCeeeccceeEe
Q 027522 156 FSAWDCQFYPELKEKGSHMLQIDVNSEKGGMAINPNFFVD 195 (222)
Q Consensus 156 ~~~wd~Q~yp~~~s~~~~i~~~dvd~~~G~l~~~~~f~vd 195 (222)
...+-..+|+. .|++.+.|..|
T Consensus 210 --------------~Dttakl~D~~----tl~v~Kty~te 231 (327)
T KOG0643|consen 210 --------------KDTTAKLVDVR----TLEVLKTYTTE 231 (327)
T ss_pred --------------cCccceeeecc----ceeeEEEeeec
Confidence 23344446654 45666666554
No 116
>KOG2111 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=91.43 E-value=4.7 Score=38.07 Aligned_cols=77 Identities=19% Similarity=0.257 Sum_probs=50.7
Q ss_pred CceeEEEEcCCCCEEEEEeCCCC-cEEEEEecCCCCCeEEEEEEecceeecCCceeeeeCCCCCCCCCCccccCcccCCC
Q 027522 58 GLITDFLISLDDRFLYFSNWLHG-DIRQYNIEDPKNPVLTGQIWVGGLFRKGSPVVAVTDDGQPYQSDVPEVQGHRLRGG 136 (222)
Q Consensus 58 ~~~adI~iSpDgrfLYvSnRgh~-sI~vf~i~d~~~~~L~~~v~~gG~~~~~~~~~~~~~~~~~~~p~~~~v~G~~~~gg 136 (222)
+.+|-+.|+.||..|-.+. -.| =|++|+..+ ++++.+..-| .. +..
T Consensus 182 s~Iacv~Ln~~Gt~vATaS-tkGTLIRIFdt~~---g~~l~E~RRG----------------------------~d-~A~ 228 (346)
T KOG2111|consen 182 SDIACVALNLQGTLVATAS-TKGTLIRIFDTED---GTLLQELRRG----------------------------VD-RAD 228 (346)
T ss_pred CceeEEEEcCCccEEEEec-cCcEEEEEEEcCC---CcEeeeeecC----------------------------Cc-hhe
Confidence 4468889999999885444 444 478887643 5555443332 11 011
Q ss_pred CeeEEECCCCCEEEEEeCCCCccccccccccccCCcEEEEEEeeC
Q 027522 137 PQMIQLSLDGKRLYVTNSLFSAWDCQFYPELKEKGSHMLQIDVNS 181 (222)
Q Consensus 137 Pr~~~lspdGk~LyvaNsl~~~wd~Q~yp~~~s~~~~i~~~dvd~ 181 (222)
=-.|++|||+.||.|+. . +...+||.+..++
T Consensus 229 iy~iaFSp~~s~LavsS--------d------KgTlHiF~l~~~~ 259 (346)
T KOG2111|consen 229 IYCIAFSPNSSWLAVSS--------D------KGTLHIFSLRDTE 259 (346)
T ss_pred EEEEEeCCCccEEEEEc--------C------CCeEEEEEeecCC
Confidence 35789999999999997 2 3578888875533
No 117
>KOG0771 consensus Prolactin regulatory element-binding protein/Protein transport protein SEC12p [Intracellular trafficking, secretion, and vesicular transport]
Probab=91.35 E-value=2.4 Score=40.85 Aligned_cols=30 Identities=23% Similarity=0.302 Sum_probs=22.2
Q ss_pred CceeEEEEcCCCCEEEEEeCCCCcEEEEEecC
Q 027522 58 GLITDFLISLDDRFLYFSNWLHGDIRQYNIED 89 (222)
Q Consensus 58 ~~~adI~iSpDgrfLYvSnRgh~sI~vf~i~d 89 (222)
+..-|+++||||+||- |- +.++-+||++.+
T Consensus 187 ~eV~DL~FS~dgk~la-si-g~d~~~VW~~~~ 216 (398)
T KOG0771|consen 187 AEVKDLDFSPDGKFLA-SI-GADSARVWSVNT 216 (398)
T ss_pred CccccceeCCCCcEEE-Ee-cCCceEEEEecc
Confidence 4467999999999984 33 234888998854
No 118
>KOG1274 consensus WD40 repeat protein [General function prediction only]
Probab=91.26 E-value=1 Score=47.16 Aligned_cols=73 Identities=18% Similarity=0.304 Sum_probs=51.1
Q ss_pred CeEeEEEcCCCCeEEEEeccCceEEEEEeCCCCCeeEEEEEEecCcccccccCCCCCCceeEEEEcCCCCEEEEEeCCCC
Q 027522 1 MQIRFLHDPSKDIGFVGCALASTMVRFSKTQDGSWNHEVAISVKSLKVQNWILPEMPGLITDFLISLDDRFLYFSNWLHG 80 (222)
Q Consensus 1 levr~afhP~g~~aYvv~ELsstV~~~~~d~~g~~~~~q~is~~p~~~~g~~~~~~~~~~adI~iSpDgrfLYvSnRgh~ 80 (222)
++.|++|||+|...-+.+ ...+|.+|... .|........ .... ..-+++..||.|+||-+|. ..|
T Consensus 190 i~~~~aW~Pk~g~la~~~-~d~~Vkvy~r~---~we~~f~Lr~--~~~s--------s~~~~~~wsPnG~YiAAs~-~~g 254 (933)
T KOG1274|consen 190 ICTRLAWHPKGGTLAVPP-VDNTVKVYSRK---GWELQFKLRD--KLSS--------SKFSDLQWSPNGKYIAAST-LDG 254 (933)
T ss_pred eeeeeeecCCCCeEEeec-cCCeEEEEccC---Cceeheeecc--cccc--------cceEEEEEcCCCcEEeeec-cCC
Confidence 357999999954444443 57999999763 4655544332 1111 2258999999999996655 789
Q ss_pred cEEEEEec
Q 027522 81 DIRQYNIE 88 (222)
Q Consensus 81 sI~vf~i~ 88 (222)
.|.+|+++
T Consensus 255 ~I~vWnv~ 262 (933)
T KOG1274|consen 255 QILVWNVD 262 (933)
T ss_pred cEEEEecc
Confidence 99999995
No 119
>KOG0289 consensus mRNA splicing factor [General function prediction only]
Probab=91.08 E-value=4.5 Score=39.71 Aligned_cols=62 Identities=11% Similarity=0.185 Sum_probs=44.2
Q ss_pred CceeEEEEcCCCCEEEEEeCCCCcEEEEEecCCCCCeEEEEEEecceeecCCceeeeeCCCCCCCCCCccccCcccCCCC
Q 027522 58 GLITDFLISLDDRFLYFSNWLHGDIRQYNIEDPKNPVLTGQIWVGGLFRKGSPVVAVTDDGQPYQSDVPEVQGHRLRGGP 137 (222)
Q Consensus 58 ~~~adI~iSpDgrfLYvSnRgh~sI~vf~i~d~~~~~L~~~v~~gG~~~~~~~~~~~~~~~~~~~p~~~~v~G~~~~ggP 137 (222)
+...+|.+|-+|-||-+.+ .+++|..||+.. .+...++..- .++. -
T Consensus 390 ~~vk~i~FsENGY~Lat~a-dd~~V~lwDLRK---l~n~kt~~l~--------------------------~~~~----v 435 (506)
T KOG0289|consen 390 GPVKAISFSENGYWLATAA-DDGSVKLWDLRK---LKNFKTIQLD--------------------------EKKE----V 435 (506)
T ss_pred CceeEEEeccCceEEEEEe-cCCeEEEEEehh---hcccceeecc--------------------------cccc----c
Confidence 4478999999999999887 356699999943 3332333331 1222 5
Q ss_pred eeEEECCCCCEEEEEe
Q 027522 138 QMIQLSLDGKRLYVTN 153 (222)
Q Consensus 138 r~~~lspdGk~LyvaN 153 (222)
..+.|+..|++|.++-
T Consensus 436 ~s~~fD~SGt~L~~~g 451 (506)
T KOG0289|consen 436 NSLSFDQSGTYLGIAG 451 (506)
T ss_pred eeEEEcCCCCeEEeec
Confidence 6889999999998885
No 120
>PF06977 SdiA-regulated: SdiA-regulated; InterPro: IPR009722 This entry represents a conserved region approximately 100 residues long within a number of hypothetical bacterial proteins that may be regulated by SdiA, a member of the LuxR family of transcriptional regulators []. Some proteins contain the IPR001258 from INTERPRO repeat.; PDB: 3QQZ_A.
Probab=91.02 E-value=3.8 Score=36.76 Aligned_cols=90 Identities=13% Similarity=0.236 Sum_probs=51.2
Q ss_pred CceeEEEEcCCCCEEEEEeCCCCcEEEEEecCCCCCeEEEEEEecceeecCCceeeeeCCCCCCCCCCccccCcccCCCC
Q 027522 58 GLITDFLISLDDRFLYFSNWLHGDIRQYNIEDPKNPVLTGQIWVGGLFRKGSPVVAVTDDGQPYQSDVPEVQGHRLRGGP 137 (222)
Q Consensus 58 ~~~adI~iSpDgrfLYvSnRgh~sI~vf~i~d~~~~~L~~~v~~gG~~~~~~~~~~~~~~~~~~~p~~~~v~G~~~~ggP 137 (222)
.-++.|...||.+.||+-+=..+.| |.++. .++++.+++..|. | -|
T Consensus 22 ~e~SGLTy~pd~~tLfaV~d~~~~i--~els~--~G~vlr~i~l~g~-------------------------~-----D~ 67 (248)
T PF06977_consen 22 DELSGLTYNPDTGTLFAVQDEPGEI--YELSL--DGKVLRRIPLDGF-------------------------G-----DY 67 (248)
T ss_dssp S-EEEEEEETTTTEEEEEETTTTEE--EEEET--T--EEEEEE-SS--------------------------S-----SE
T ss_pred CCccccEEcCCCCeEEEEECCCCEE--EEEcC--CCCEEEEEeCCCC-------------------------C-----Cc
Confidence 4479999999999999776556666 45532 3778899988663 1 27
Q ss_pred eeEEECCCCCEEEEEeCCCCccccccccccccCCcEEEEEEeeCCCCCeeec--cceeEecC
Q 027522 138 QMIQLSLDGKRLYVTNSLFSAWDCQFYPELKEKGSHMLQIDVNSEKGGMAIN--PNFFVDFE 197 (222)
Q Consensus 138 r~~~lspdGk~LyvaNsl~~~wd~Q~yp~~~s~~~~i~~~dvd~~~G~l~~~--~~f~vdf~ 197 (222)
..++..-+|+++++. +....++.++++..+..+... +.+.+++.
T Consensus 68 EgI~y~g~~~~vl~~----------------Er~~~L~~~~~~~~~~~~~~~~~~~~~l~~~ 113 (248)
T PF06977_consen 68 EGITYLGNGRYVLSE----------------ERDQRLYIFTIDDDTTSLDRADVQKISLGFP 113 (248)
T ss_dssp EEEEE-STTEEEEEE----------------TTTTEEEEEEE----TT--EEEEEEEE---S
T ss_pred eeEEEECCCEEEEEE----------------cCCCcEEEEEEeccccccchhhceEEecccc
Confidence 788888777655443 245677777777777766533 45555554
No 121
>TIGR03606 non_repeat_PQQ dehydrogenase, PQQ-dependent, s-GDH family. PQQ, or pyrroloquinoline-quinone, serves as a cofactor for a number of sugar and alcohol dehydrogenases in a limited number of bacterial species. Most characterized PQQ-dependent enzymes have multiple repeats of a sequence region described by pfam01011 (PQQ enzyme repeat), but this protein family in unusual in lacking that repeat. Below the noise cutoff are related proteins mostly from species that lack PQQ biosynthesis.
Probab=90.70 E-value=3.9 Score=39.93 Aligned_cols=95 Identities=14% Similarity=0.133 Sum_probs=53.0
Q ss_pred CceeEEEEcCCCCEEEEEeCCCCcEEEEEecCCCCCeEEEEEEecceeecCCceeeeeCCCCCCCCCCccccCcccCCCC
Q 027522 58 GLITDFLISLDDRFLYFSNWLHGDIRQYNIEDPKNPVLTGQIWVGGLFRKGSPVVAVTDDGQPYQSDVPEVQGHRLRGGP 137 (222)
Q Consensus 58 ~~~adI~iSpDgrfLYvSnRgh~sI~vf~i~d~~~~~L~~~v~~gG~~~~~~~~~~~~~~~~~~~p~~~~v~G~~~~ggP 137 (222)
..+-+|.+.|||| |||+-|..+.|.+++-. ....+.+..+.. . . ...| .+|+
T Consensus 30 ~~Pw~maflPDG~-llVtER~~G~I~~v~~~-~~~~~~~~~l~~--v---------~------------~~~g---e~GL 81 (454)
T TIGR03606 30 NKPWALLWGPDNQ-LWVTERATGKILRVNPE-TGEVKVVFTLPE--I---------V------------NDAQ---HNGL 81 (454)
T ss_pred CCceEEEEcCCCe-EEEEEecCCEEEEEeCC-CCceeeeecCCc--e---------e------------ccCC---CCce
Confidence 3458999999996 66888877888877431 122222111110 0 0 0002 3568
Q ss_pred eeEEECCCC------CEEEEEeCCCCccccccccccccCCcEEEEEEeeCCCCCe
Q 027522 138 QMIQLSLDG------KRLYVTNSLFSAWDCQFYPELKEKGSHMLQIDVNSEKGGM 186 (222)
Q Consensus 138 r~~~lspdG------k~LyvaNsl~~~wd~Q~yp~~~s~~~~i~~~dvd~~~G~l 186 (222)
=.|+|+||= ++|||+.+- +.=+.+ ......|.|+..+..+..+
T Consensus 82 lglal~PdF~~~~~n~~lYvsyt~-~~~~~~-----~~~~~~I~R~~l~~~~~~l 130 (454)
T TIGR03606 82 LGLALHPDFMQEKGNPYVYISYTY-KNGDKE-----LPNHTKIVRYTYDKSTQTL 130 (454)
T ss_pred eeEEECCCccccCCCcEEEEEEec-cCCCCC-----ccCCcEEEEEEecCCCCcc
Confidence 899999884 689999741 000000 0024578887776544444
No 122
>KOG0272 consensus U4/U6 small nuclear ribonucleoprotein Prp4 (contains WD40 repeats) [RNA processing and modification]
Probab=90.31 E-value=7.5 Score=37.97 Aligned_cols=77 Identities=14% Similarity=0.082 Sum_probs=49.9
Q ss_pred EeEEEcCCCCeEEEEec--------------------cCceEEEEEeCCCCCeeEEE---------------EEEecCcc
Q 027522 3 IRFLHDPSKDIGFVGCA--------------------LASTMVRFSKTQDGSWNHEV---------------AISVKSLK 47 (222)
Q Consensus 3 vr~afhP~g~~aYvv~E--------------------LsstV~~~~~d~~g~~~~~q---------------~is~~p~~ 47 (222)
.|.+|||+|+++-..|= -+-.|+-+.+..+|.+.+.- -|.++.
T Consensus 265 s~VafHPsG~~L~TasfD~tWRlWD~~tk~ElL~QEGHs~~v~~iaf~~DGSL~~tGGlD~~~RvWDlRtgr~im~L~-- 342 (459)
T KOG0272|consen 265 SRVAFHPSGKFLGTASFDSTWRLWDLETKSELLLQEGHSKGVFSIAFQPDGSLAATGGLDSLGRVWDLRTGRCIMFLA-- 342 (459)
T ss_pred eeeeecCCCceeeecccccchhhcccccchhhHhhcccccccceeEecCCCceeeccCccchhheeecccCcEEEEec--
Confidence 48899999998766552 22336666555555443321 122222
Q ss_pred cccccCCCCCCceeEEEEcCCCCEEEEEeCCCCcEEEEEecC
Q 027522 48 VQNWILPEMPGLITDFLISLDDRFLYFSNWLHGDIRQYNIED 89 (222)
Q Consensus 48 ~~g~~~~~~~~~~adI~iSpDgrfLYvSnRgh~sI~vf~i~d 89 (222)
|.. ..+.++..||+|-.| +++-+++++.|||+..
T Consensus 343 --gH~-----k~I~~V~fsPNGy~l-ATgs~Dnt~kVWDLR~ 376 (459)
T KOG0272|consen 343 --GHI-----KEILSVAFSPNGYHL-ATGSSDNTCKVWDLRM 376 (459)
T ss_pred --ccc-----cceeeEeECCCceEE-eecCCCCcEEEeeecc
Confidence 221 236889999999777 7777899999999954
No 123
>KOG0291 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=90.16 E-value=12 Score=39.09 Aligned_cols=127 Identities=13% Similarity=0.195 Sum_probs=79.1
Q ss_pred EEEcCCCCeEEEEeccCceEEEEEeCCCCCeeEEEEEEecCcccccccCCCCCCceeEEEEcCCCCEEEEEeCCCCcEEE
Q 027522 5 FLHDPSKDIGFVGCALASTMVRFSKTQDGSWNHEVAISVKSLKVQNWILPEMPGLITDFLISLDDRFLYFSNWLHGDIRQ 84 (222)
Q Consensus 5 ~afhP~g~~aYvv~ELsstV~~~~~d~~g~~~~~q~is~~p~~~~g~~~~~~~~~~adI~iSpDgrfLYvSnRgh~sI~v 84 (222)
++++|||.++-..+| +++|-+|... .|-- .++.. +. . +..+++.++.+|+.|..|+ .+|+|+.
T Consensus 356 l~YSpDgq~iaTG~e-DgKVKvWn~~-SgfC----~vTFt-eH---t------s~Vt~v~f~~~g~~llssS-LDGtVRA 418 (893)
T KOG0291|consen 356 LAYSPDGQLIATGAE-DGKVKVWNTQ-SGFC----FVTFT-EH---T------SGVTAVQFTARGNVLLSSS-LDGTVRA 418 (893)
T ss_pred EEECCCCcEEEeccC-CCcEEEEecc-CceE----EEEec-cC---C------CceEEEEEEecCCEEEEee-cCCeEEe
Confidence 678888888888887 7777777542 2211 11211 11 1 5569999999999997666 8999999
Q ss_pred EEecCCCCCeEEEEEEecceeecCCceeeeeCCCCCCCCCCccccCcccCCCCeeEEECCCCCEEEEEeCCCCccccccc
Q 027522 85 YNIEDPKNPVLTGQIWVGGLFRKGSPVVAVTDDGQPYQSDVPEVQGHRLRGGPQMIQLSLDGKRLYVTNSLFSAWDCQFY 164 (222)
Q Consensus 85 f~i~d~~~~~L~~~v~~gG~~~~~~~~~~~~~~~~~~~p~~~~v~G~~~~ggPr~~~lspdGk~LyvaNsl~~~wd~Q~y 164 (222)
||+.. . +=-.+... |++ .. =..++.+|.|.-+.++. |
T Consensus 419 wDlkR-Y--rNfRTft~---------------------P~p-----~Q----fscvavD~sGelV~AG~--------~-- 455 (893)
T KOG0291|consen 419 WDLKR-Y--RNFRTFTS---------------------PEP-----IQ----FSCVAVDPSGELVCAGA--------Q-- 455 (893)
T ss_pred eeecc-c--ceeeeecC---------------------CCc-----ee----eeEEEEcCCCCEEEeec--------c--
Confidence 99854 1 11011111 110 00 22456788899877776 5
Q ss_pred cccccCCcEEEEEEeeCCCCCeeeccceeEecCCCCCCCcc
Q 027522 165 PELKEKGSHMLQIDVNSEKGGMAINPNFFVDFEAEPDGPAL 205 (222)
Q Consensus 165 p~~~s~~~~i~~~dvd~~~G~l~~~~~f~vdf~~~~~g~~~ 205 (222)
|.=-|+...+ .||.| +|--..--||--
T Consensus 456 -----d~F~IfvWS~--qTGql-------lDiLsGHEgPVs 482 (893)
T KOG0291|consen 456 -----DSFEIFVWSV--QTGQL-------LDILSGHEGPVS 482 (893)
T ss_pred -----ceEEEEEEEe--ecCee-------eehhcCCCCcce
Confidence 5777777755 88987 454444455543
No 124
>PRK13616 lipoprotein LpqB; Provisional
Probab=89.92 E-value=16 Score=36.68 Aligned_cols=19 Identities=37% Similarity=0.338 Sum_probs=16.6
Q ss_pred CCCeeEEECCCCCEEEEEe
Q 027522 135 GGPQMIQLSLDGKRLYVTN 153 (222)
Q Consensus 135 ggPr~~~lspdGk~LyvaN 153 (222)
+++..+.+||||+||.+.-
T Consensus 448 g~Issl~wSpDG~RiA~i~ 466 (591)
T PRK13616 448 GPISELQLSRDGVRAAMII 466 (591)
T ss_pred CCcCeEEECCCCCEEEEEE
Confidence 4589999999999999875
No 125
>KOG0272 consensus U4/U6 small nuclear ribonucleoprotein Prp4 (contains WD40 repeats) [RNA processing and modification]
Probab=89.64 E-value=1.8 Score=42.09 Aligned_cols=146 Identities=21% Similarity=0.356 Sum_probs=90.4
Q ss_pred EEEcCC-CCeEEEEeccCceEEEEEeCCCCCeeEEEEEEecCcccccccCCCCCCceeEEEEcCCCCEEEEEeCCCCcEE
Q 027522 5 FLHDPS-KDIGFVGCALASTMVRFSKTQDGSWNHEVAISVKSLKVQNWILPEMPGLITDFLISLDDRFLYFSNWLHGDIR 83 (222)
Q Consensus 5 ~afhP~-g~~aYvv~ELsstV~~~~~d~~g~~~~~q~is~~p~~~~g~~~~~~~~~~adI~iSpDgrfLYvSnRgh~sI~ 83 (222)
..|||. ....-+.|..+.+|-.|..+.. +.. ..++|. +...+.++.+|+||||-..+..+ +=+
T Consensus 223 ~~fhP~~~~~~lat~s~Dgtvklw~~~~e---~~l-------~~l~gH-----~~RVs~VafHPsG~~L~TasfD~-tWR 286 (459)
T KOG0272|consen 223 AVFHPVDSDLNLATASADGTVKLWKLSQE---TPL-------QDLEGH-----LARVSRVAFHPSGKFLGTASFDS-TWR 286 (459)
T ss_pred EEEccCCCccceeeeccCCceeeeccCCC---cch-------hhhhcc-----hhhheeeeecCCCceeeeccccc-chh
Confidence 579998 4667778888888888877532 111 223333 15579999999999998888654 678
Q ss_pred EEEecCCCCCeEEEEEEecceeecCCceeeeeCCCCCCCCCCccccCcccCCCCeeEEECCCCCEEEEEeCC---CCccc
Q 027522 84 QYNIEDPKNPVLTGQIWVGGLFRKGSPVVAVTDDGQPYQSDVPEVQGHRLRGGPQMIQLSLDGKRLYVTNSL---FSAWD 160 (222)
Q Consensus 84 vf~i~d~~~~~L~~~v~~gG~~~~~~~~~~~~~~~~~~~p~~~~v~G~~~~ggPr~~~lspdGk~LyvaNsl---~~~wd 160 (222)
.||+.. ..--| .-.|.- +| --++++-+||. |.++-.| =--||
T Consensus 287 lWD~~t-k~ElL----~QEGHs-----------------------~~------v~~iaf~~DGS-L~~tGGlD~~~RvWD 331 (459)
T KOG0272|consen 287 LWDLET-KSELL----LQEGHS-----------------------KG------VFSIAFQPDGS-LAATGGLDSLGRVWD 331 (459)
T ss_pred hccccc-chhhH----hhcccc-----------------------cc------cceeEecCCCc-eeeccCccchhheee
Confidence 899854 22222 111210 12 34789999997 5555432 22355
Q ss_pred cccccccccCCcEEEEEEeeCCCCCeeeccceeEecCCCCCCCcceeeeecCCCCcCcccc
Q 027522 161 CQFYPELKEKGSHMLQIDVNSEKGGMAINPNFFVDFEAEPDGPALAHEMRYPGGDCTSDIW 221 (222)
Q Consensus 161 ~Q~yp~~~s~~~~i~~~dvd~~~G~l~~~~~f~vdf~~~~~g~~~~h~~r~~~gd~~sd~~ 221 (222)
-.- +..|+-++ | -+.+-|.|+|. |+| -+|-=.++|||--||
T Consensus 332 lRt-------gr~im~L~-----g--H~k~I~~V~fs--PNG----y~lATgs~Dnt~kVW 372 (459)
T KOG0272|consen 332 LRT-------GRCIMFLA-----G--HIKEILSVAFS--PNG----YHLATGSSDNTCKVW 372 (459)
T ss_pred ccc-------CcEEEEec-----c--cccceeeEeEC--CCc----eEEeecCCCCcEEEe
Confidence 442 22222221 1 24566778885 566 567778999999888
No 126
>KOG1539 consensus WD repeat protein [General function prediction only]
Probab=89.52 E-value=2.2 Score=44.50 Aligned_cols=65 Identities=15% Similarity=0.154 Sum_probs=49.9
Q ss_pred EEEcCCCCeEEEEeccCceEEEEEeCCCCCeeEEEEEEecCcccccccCCCCCCceeEEEEcCCCCEEEEEeCCCCcEEE
Q 027522 5 FLHDPSKDIGFVGCALASTMVRFSKTQDGSWNHEVAISVKSLKVQNWILPEMPGLITDFLISLDDRFLYFSNWLHGDIRQ 84 (222)
Q Consensus 5 ~afhP~g~~aYvv~ELsstV~~~~~d~~g~~~~~q~is~~p~~~~g~~~~~~~~~~adI~iSpDgrfLYvSnRgh~sI~v 84 (222)
|.|+|+|+|+-+. .++++|.+|..- .|.+ +..+.+. +.+..+..||.|-||-++-++++.|..
T Consensus 582 ~~FS~DgrWlisa-smD~tIr~wDlp-t~~l--ID~~~vd-------------~~~~sls~SPngD~LAT~Hvd~~gIyl 644 (910)
T KOG1539|consen 582 MTFSPDGRWLISA-SMDSTIRTWDLP-TGTL--IDGLLVD-------------SPCTSLSFSPNGDFLATVHVDQNGIYL 644 (910)
T ss_pred eEeCCCCcEEEEe-ecCCcEEEEecc-Ccce--eeeEecC-------------CcceeeEECCCCCEEEEEEecCceEEE
Confidence 7899999998655 489999999763 3432 2333221 446899999999999999999999988
Q ss_pred EE
Q 027522 85 YN 86 (222)
Q Consensus 85 f~ 86 (222)
|.
T Consensus 645 Ws 646 (910)
T KOG1539|consen 645 WS 646 (910)
T ss_pred EE
Confidence 84
No 127
>PF02897 Peptidase_S9_N: Prolyl oligopeptidase, N-terminal beta-propeller domain; InterPro: IPR004106 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This entry represents the beta-propeller domain found at the N-terminal of prolyl oligopeptidase, including acylamino-acid-releasing enzyme (also known as acylaminoacyl peptidase), which belong to the MEROPS peptidase family S9 (clan SC), subfamily S9A. The prolyl oligopeptidase family consist of a number of evolutionary related peptidases whose catalytic activity seems to be provided by a charge relay system similar to that of the trypsin family of serine proteases, but which evolved by independent convergent evolution. The N-terminal domain of prolyl oligopeptidases form an unusual 7-bladed beta-propeller consisting of seven 4-stranded beta-sheet motifs. Prolyl oligopeptidase is a large cytosolic enzyme involved in the maturation and degradation of peptide hormones and neuropeptides, which relate to the induction of amnesia. The enzyme contains a peptidase domain, where its catalytic triad (Ser554, His680, Asp641) is covered by the central tunnel of the N-terminal beta-propeller domain. In this way, large structured peptides are excluded from the active site, thereby protecting larger peptides and proteins from proteolysis in the cytosol []. The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. Mammalian acylaminoacyl peptidase is an exopeptidase that is a member of the same prolyl oligopeptidase family of serine peptidases. This enzyme removes acylated amino acid residues from the N terminus of oligopeptides [].; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 2BKL_B 3DDU_A 1YR2_A 2XE4_A 1VZ3_A 3EQ9_A 1O6F_A 3EQ7_A 4AN0_A 1UOP_A ....
Probab=89.47 E-value=6.5 Score=36.16 Aligned_cols=60 Identities=18% Similarity=0.205 Sum_probs=36.5
Q ss_pred ceeEEEEcCCCCEEEEEe-CCCCc---EEEEEecCCCCCeEEEEEEecceeecCCceeeeeCCCCCCCCCCccccCcccC
Q 027522 59 LITDFLISLDDRFLYFSN-WLHGD---IRQYNIEDPKNPVLTGQIWVGGLFRKGSPVVAVTDDGQPYQSDVPEVQGHRLR 134 (222)
Q Consensus 59 ~~adI~iSpDgrfLYvSn-Rgh~s---I~vf~i~d~~~~~L~~~v~~gG~~~~~~~~~~~~~~~~~~~p~~~~v~G~~~~ 134 (222)
....+.+||||++|-++- .+.++ |.++++ .+++++...-. +-.
T Consensus 125 ~~~~~~~Spdg~~la~~~s~~G~e~~~l~v~Dl---~tg~~l~d~i~----------------------------~~~-- 171 (414)
T PF02897_consen 125 SLGGFSVSPDGKRLAYSLSDGGSEWYTLRVFDL---ETGKFLPDGIE----------------------------NPK-- 171 (414)
T ss_dssp EEEEEEETTTSSEEEEEEEETTSSEEEEEEEET---TTTEEEEEEEE----------------------------EEE--
T ss_pred EeeeeeECCCCCEEEEEecCCCCceEEEEEEEC---CCCcCcCCccc----------------------------ccc--
Confidence 446899999999887663 33333 555554 34565432111 011
Q ss_pred CCCeeEEECCCCCEEEEEe
Q 027522 135 GGPQMIQLSLDGKRLYVTN 153 (222)
Q Consensus 135 ggPr~~~lspdGk~LyvaN 153 (222)
...|..++||+.||.+.
T Consensus 172 --~~~~~W~~d~~~~~y~~ 188 (414)
T PF02897_consen 172 --FSSVSWSDDGKGFFYTR 188 (414)
T ss_dssp --SEEEEECTTSSEEEEEE
T ss_pred --cceEEEeCCCCEEEEEE
Confidence 33489999999887775
No 128
>PF03022 MRJP: Major royal jelly protein; InterPro: IPR003534 The major royal jelly proteins (MRJPs) comprise 12.5% of the mass, and 82-90% of the protein content [], of honeybee (Apis mellifera) royal jelly. Royal jelly is a substance secreted by the cephalic glands of nurse bees [] and it is used to trigger development of a queen bee from a bee larva. The biological function of the MRJPs is unknown, but they are believed to play a major role in nutrition due to their high essential amino acid content []. Two royal jelly proteins, MRJP3 and MRJP5, contain a tandem repeat that results from a high genetic variablility. This polymorphism may be useful for genotyping individual bees [].; PDB: 3Q6P_B 3Q6K_A 3Q6T_A 2QE8_B.
Probab=89.40 E-value=12 Score=33.89 Aligned_cols=59 Identities=12% Similarity=0.198 Sum_probs=42.3
Q ss_pred ceEEEEEeCCCCCeeEEEEEEecCcccccccCCCCCCceeEEEEcCCC-----CEEEEEeCCCCcEEEEEecC
Q 027522 22 STMVRFSKTQDGSWNHEVAISVKSLKVQNWILPEMPGLITDFLISLDD-----RFLYFSNWLHGDIRQYNIED 89 (222)
Q Consensus 22 stV~~~~~d~~g~~~~~q~is~~p~~~~g~~~~~~~~~~adI~iSpDg-----rfLYvSnRgh~sI~vf~i~d 89 (222)
.+|..|... +++ ..+++.+|+.-..+. +...+|+|.... .|+|++.-+...|.||++..
T Consensus 34 pKLv~~Dl~-t~~--li~~~~~p~~~~~~~------s~lndl~VD~~~~~~~~~~aYItD~~~~glIV~dl~~ 97 (287)
T PF03022_consen 34 PKLVAFDLK-TNQ--LIRRYPFPPDIAPPD------SFLNDLVVDVRDGNCDDGFAYITDSGGPGLIVYDLAT 97 (287)
T ss_dssp -EEEEEETT-TTC--EEEEEE--CCCS-TC------GGEEEEEEECTTTTS-SEEEEEEETTTCEEEEEETTT
T ss_pred cEEEEEECC-CCc--EEEEEECChHHcccc------cccceEEEEccCCCCcceEEEEeCCCcCcEEEEEccC
Confidence 468888764 343 678888886555433 667999999833 79999999999999999964
No 129
>PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats.
Probab=89.30 E-value=26 Score=35.27 Aligned_cols=74 Identities=18% Similarity=0.153 Sum_probs=52.5
Q ss_pred CCCeeEEEEEEecCcccccccCCCCCCceeEEEEcCCCCEEEEEeCCCCcEEEEEecCCCCCeEEEEEEecceeecCCce
Q 027522 32 DGSWNHEVAISVKSLKVQNWILPEMPGLITDFLISLDDRFLYFSNWLHGDIRQYNIEDPKNPVLTGQIWVGGLFRKGSPV 111 (222)
Q Consensus 32 ~g~~~~~q~is~~p~~~~g~~~~~~~~~~adI~iSpDgrfLYvSnRgh~sI~vf~i~d~~~~~L~~~v~~gG~~~~~~~~ 111 (222)
.+++....++++|- ++.+.-+..||+...|-+.| -+++|..||... . -++ .+..
T Consensus 245 r~klqrvsvtsipL-----------~s~v~~ca~sp~E~kLvlGC-~DgSiiLyD~~~-~-~t~--~~ka---------- 298 (545)
T PF11768_consen 245 RNKLQRVSVTSIPL-----------PSQVICCARSPSEDKLVLGC-EDGSIILYDTTR-G-VTL--LAKA---------- 298 (545)
T ss_pred cCceeEEEEEEEec-----------CCcceEEecCcccceEEEEe-cCCeEEEEEcCC-C-eee--eeee----------
Confidence 34666666666652 24568889999999998888 589999998843 2 112 1221
Q ss_pred eeeeCCCCCCCCCCccccCcccCCCCeeEEECCCCCEEEEEe
Q 027522 112 VAVTDDGQPYQSDVPEVQGHRLRGGPQMIQLSLDGKRLYVTN 153 (222)
Q Consensus 112 ~~~~~~~~~~~p~~~~v~G~~~~ggPr~~~lspdGk~LyvaN 153 (222)
.-. |..++..|+|..+.|+|
T Consensus 299 ------------------~~~----P~~iaWHp~gai~~V~s 318 (545)
T PF11768_consen 299 ------------------EFI----PTLIAWHPDGAIFVVGS 318 (545)
T ss_pred ------------------ccc----ceEEEEcCCCcEEEEEc
Confidence 011 88999999999999999
No 130
>KOG1407 consensus WD40 repeat protein [Function unknown]
Probab=89.22 E-value=9.4 Score=35.50 Aligned_cols=116 Identities=18% Similarity=0.271 Sum_probs=75.6
Q ss_pred CceeEEEEcCCCCEEEEEeCCCCcEEEEEecCCCCCeEEEEEEecceeecCCceeeeeCCCCCCCCCCccccCcccCCCC
Q 027522 58 GLITDFLISLDDRFLYFSNWLHGDIRQYNIEDPKNPVLTGQIWVGGLFRKGSPVVAVTDDGQPYQSDVPEVQGHRLRGGP 137 (222)
Q Consensus 58 ~~~adI~iSpDgrfLYvSnRgh~sI~vf~i~d~~~~~L~~~v~~gG~~~~~~~~~~~~~~~~~~~p~~~~v~G~~~~ggP 137 (222)
-..-+|.-+.++.+.+..| |-|.|-+..- | .++.+..|. .||..+
T Consensus 148 ~e~ne~~w~~~nd~Fflt~-GlG~v~ILsy--p-sLkpv~si~--------------------AH~snC----------- 192 (313)
T KOG1407|consen 148 FEVNEISWNNSNDLFFLTN-GLGCVEILSY--P-SLKPVQSIK--------------------AHPSNC----------- 192 (313)
T ss_pred ceeeeeeecCCCCEEEEec-CCceEEEEec--c-ccccccccc--------------------cCCcce-----------
Confidence 4457888888888887777 6677766544 2 233333333 344332
Q ss_pred eeEEECCCCCEEEE--EeCCCCccccccccccccCCcEEEEEEee------CCCCCe--eeccceeEecCCCCCCCccee
Q 027522 138 QMIQLSLDGKRLYV--TNSLFSAWDCQFYPELKEKGSHMLQIDVN------SEKGGM--AINPNFFVDFEAEPDGPALAH 207 (222)
Q Consensus 138 r~~~lspdGk~Lyv--aNsl~~~wd~Q~yp~~~s~~~~i~~~dvd------~~~G~l--~~~~~f~vdf~~~~~g~~~~h 207 (222)
=.+.++|+||++-+ |.+|-|-||-++ ++ =--.+-|.|.- .-+|+| .-.++-+||-...+.| .+.|
T Consensus 193 icI~f~p~GryfA~GsADAlvSLWD~~E---Li-C~R~isRldwpVRTlSFS~dg~~lASaSEDh~IDIA~vetG-d~~~ 267 (313)
T KOG1407|consen 193 ICIEFDPDGRYFATGSADALVSLWDVDE---LI-CERCISRLDWPVRTLSFSHDGRMLASASEDHFIDIAEVETG-DRVW 267 (313)
T ss_pred EEEEECCCCceEeeccccceeeccChhH---hh-hheeeccccCceEEEEeccCcceeeccCccceEEeEecccC-CeEE
Confidence 14788999999986 578999999984 33 01112222221 134777 4789999999999999 8999
Q ss_pred eeecCC
Q 027522 208 EMRYPG 213 (222)
Q Consensus 208 ~~r~~~ 213 (222)
||.-.|
T Consensus 268 eI~~~~ 273 (313)
T KOG1407|consen 268 EIPCEG 273 (313)
T ss_pred EeeccC
Confidence 997443
No 131
>KOG2919 consensus Guanine nucleotide-binding protein [General function prediction only]
Probab=89.11 E-value=2.5 Score=40.27 Aligned_cols=115 Identities=13% Similarity=0.175 Sum_probs=72.1
Q ss_pred EEEcCCCCeEEEEeccCceEEEEEeCCCCCeeEEEEEEecCcccccccCCCCCCceeEEEEcCCCCEEEEEeCCCCcEEE
Q 027522 5 FLHDPSKDIGFVGCALASTMVRFSKTQDGSWNHEVAISVKSLKVQNWILPEMPGLITDFLISLDDRFLYFSNWLHGDIRQ 84 (222)
Q Consensus 5 ~afhP~g~~aYvv~ELsstV~~~~~d~~g~~~~~q~is~~p~~~~g~~~~~~~~~~adI~iSpDgrfLYvSnRgh~sI~v 84 (222)
|+|||-..-.+.+.--+.++-.+..+..+-+ ++.- |. .+.++.+...+||..||+-.|-.+.|-+
T Consensus 213 ~a~sP~~~~~~a~gsY~q~~giy~~~~~~pl---~llg-------gh-----~gGvThL~~~edGn~lfsGaRk~dkIl~ 277 (406)
T KOG2919|consen 213 FAFSPMDSKTLAVGSYGQRVGIYNDDGRRPL---QLLG-------GH-----GGGVTHLQWCEDGNKLFSGARKDDKILC 277 (406)
T ss_pred eeccCCCCcceeeecccceeeeEecCCCCce---eeec-------cc-----CCCeeeEEeccCcCeecccccCCCeEEE
Confidence 6778877766666666666666665432212 2211 11 1567999999999999999999999999
Q ss_pred EEecCCCCCeEEEEEEecceeecCCceeeeeCCCCCCCCCCccccCcccCCCCeeEEECCCCCEEEEE--eCCCCccccc
Q 027522 85 YNIEDPKNPVLTGQIWVGGLFRKGSPVVAVTDDGQPYQSDVPEVQGHRLRGGPQMIQLSLDGKRLYVT--NSLFSAWDCQ 162 (222)
Q Consensus 85 f~i~d~~~~~L~~~v~~gG~~~~~~~~~~~~~~~~~~~p~~~~v~G~~~~ggPr~~~lspdGk~Lyva--Nsl~~~wd~Q 162 (222)
|||..-..+.. .+++... + | +-+ =.|-|+|+|++|.-. .-+-+-||-+
T Consensus 278 WDiR~~~~pv~----~L~rhv~-~---------------T----NQR------I~FDld~~~~~LasG~tdG~V~vwdlk 327 (406)
T KOG2919|consen 278 WDIRYSRDPVY----ALERHVG-D---------------T----NQR------ILFDLDPKGEILASGDTDGSVRVWDLK 327 (406)
T ss_pred Eeehhccchhh----hhhhhcc-C---------------c----cce------EEEecCCCCceeeccCCCccEEEEecC
Confidence 99954222311 2221110 0 0 001 157889999998754 4566778877
Q ss_pred cc
Q 027522 163 FY 164 (222)
Q Consensus 163 ~y 164 (222)
.|
T Consensus 328 ~~ 329 (406)
T KOG2919|consen 328 DL 329 (406)
T ss_pred CC
Confidence 53
No 132
>PLN00181 protein SPA1-RELATED; Provisional
Probab=88.96 E-value=9.8 Score=38.59 Aligned_cols=71 Identities=10% Similarity=0.087 Sum_probs=43.1
Q ss_pred EEEcCCCCeEEEEeccCceEEEEEeCC---CCCeeEEEEEEecCcccccccCCCCCCceeEEEEcCC-CCEEEEEeCCCC
Q 027522 5 FLHDPSKDIGFVGCALASTMVRFSKTQ---DGSWNHEVAISVKSLKVQNWILPEMPGLITDFLISLD-DRFLYFSNWLHG 80 (222)
Q Consensus 5 ~afhP~g~~aYvv~ELsstV~~~~~d~---~g~~~~~q~is~~p~~~~g~~~~~~~~~~adI~iSpD-grfLYvSnRgh~ 80 (222)
++|+|+|+++.+..+ +.+|.+|.... ++......+..+ .+. .....+..++. +++|. |+-..+
T Consensus 489 i~fs~dg~~latgg~-D~~I~iwd~~~~~~~~~~~~~~~~~~-----~~~------~~v~~l~~~~~~~~~la-s~~~Dg 555 (793)
T PLN00181 489 IGFDRDGEFFATAGV-NKKIKIFECESIIKDGRDIHYPVVEL-----ASR------SKLSGICWNSYIKSQVA-SSNFEG 555 (793)
T ss_pred EEECCCCCEEEEEeC-CCEEEEEECCcccccccccccceEEe-----ccc------CceeeEEeccCCCCEEE-EEeCCC
Confidence 689999998888775 78888886531 111110111111 111 23467788775 56654 444688
Q ss_pred cEEEEEec
Q 027522 81 DIRQYNIE 88 (222)
Q Consensus 81 sI~vf~i~ 88 (222)
.|++|++.
T Consensus 556 ~v~lWd~~ 563 (793)
T PLN00181 556 VVQVWDVA 563 (793)
T ss_pred eEEEEECC
Confidence 99999984
No 133
>KOG0315 consensus G-protein beta subunit-like protein (contains WD40 repeats) [General function prediction only]
Probab=88.93 E-value=13 Score=34.42 Aligned_cols=82 Identities=16% Similarity=0.195 Sum_probs=53.0
Q ss_pred eEeEEEcCCCCeEEEEeccCceEEEEEeCCCC------CeeEEEEEEec---C---cccccccCCCCCCceeEEEEcCCC
Q 027522 2 QIRFLHDPSKDIGFVGCALASTMVRFSKTQDG------SWNHEVAISVK---S---LKVQNWILPEMPGLITDFLISLDD 69 (222)
Q Consensus 2 evr~afhP~g~~aYvv~ELsstV~~~~~d~~g------~~~~~q~is~~---p---~~~~g~~~~~~~~~~adI~iSpDg 69 (222)
-|||-=--.|+....+.--+|.|-++....++ .+.......+- | ..|++- .+..+.+-+.-||
T Consensus 21 TIRfWqa~tG~C~rTiqh~dsqVNrLeiTpdk~~LAaa~~qhvRlyD~~S~np~Pv~t~e~h-----~kNVtaVgF~~dg 95 (311)
T KOG0315|consen 21 TIRFWQALTGICSRTIQHPDSQVNRLEITPDKKDLAAAGNQHVRLYDLNSNNPNPVATFEGH-----TKNVTAVGFQCDG 95 (311)
T ss_pred eeeeeehhcCeEEEEEecCccceeeEEEcCCcchhhhccCCeeEEEEccCCCCCceeEEecc-----CCceEEEEEeecC
Confidence 36666666677777777777777777665432 23333333322 1 112221 1457899999999
Q ss_pred CEEEEEeCCCCcEEEEEecC
Q 027522 70 RFLYFSNWLHGDIRQYNIED 89 (222)
Q Consensus 70 rfLYvSnRgh~sI~vf~i~d 89 (222)
||+|.+. -++++++|++..
T Consensus 96 rWMyTgs-eDgt~kIWdlR~ 114 (311)
T KOG0315|consen 96 RWMYTGS-EDGTVKIWDLRS 114 (311)
T ss_pred eEEEecC-CCceEEEEeccC
Confidence 9999886 578999999954
No 134
>COG4946 Uncharacterized protein related to the periplasmic component of the Tol biopolymer transport system [Function unknown]
Probab=88.77 E-value=2.9 Score=41.69 Aligned_cols=58 Identities=26% Similarity=0.519 Sum_probs=40.2
Q ss_pred CeeEEECCCCCEEEEEeCCCCccccccccccccCCcEEEEEEeeCCCCCee----eccceeEecCCCCCCCcceeeeecC
Q 027522 137 PQMIQLSLDGKRLYVTNSLFSAWDCQFYPELKEKGSHMLQIDVNSEKGGMA----INPNFFVDFEAEPDGPALAHEMRYP 212 (222)
Q Consensus 137 Pr~~~lspdGk~LyvaNsl~~~wd~Q~yp~~~s~~~~i~~~dvd~~~G~l~----~~~~f~vdf~~~~~g~~~~h~~r~~ 212 (222)
--.+.+|+|||++.||| +.-.+..+|+| ||..+ -....-+||.--|++-.+| --||
T Consensus 404 I~av~vs~dGK~~vvaN----------------dr~el~vidid--ngnv~~idkS~~~lItdf~~~~nsr~iA--YafP 463 (668)
T COG4946 404 IEAVKVSPDGKKVVVAN----------------DRFELWVIDID--NGNVRLIDKSEYGLITDFDWHPNSRWIA--YAFP 463 (668)
T ss_pred eEEEEEcCCCcEEEEEc----------------CceEEEEEEec--CCCeeEecccccceeEEEEEcCCceeEE--EecC
Confidence 34678999999999999 56677778885 55554 3344566888888884443 3455
Q ss_pred CC
Q 027522 213 GG 214 (222)
Q Consensus 213 ~g 214 (222)
.|
T Consensus 464 ~g 465 (668)
T COG4946 464 EG 465 (668)
T ss_pred cc
Confidence 44
No 135
>KOG0319 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=88.61 E-value=6.4 Score=40.70 Aligned_cols=75 Identities=13% Similarity=0.193 Sum_probs=50.9
Q ss_pred EEEcCCCCeEEEEeccCceEEEEEeCCCCCeeEEEEEEecCcccccccCCCCCCceeEEEEcCCCCEEEEEeCCCCcEEE
Q 027522 5 FLHDPSKDIGFVGCALASTMVRFSKTQDGSWNHEVAISVKSLKVQNWILPEMPGLITDFLISLDDRFLYFSNWLHGDIRQ 84 (222)
Q Consensus 5 ~afhP~g~~aYvv~ELsstV~~~~~d~~g~~~~~q~is~~p~~~~g~~~~~~~~~~adI~iSpDgrfLYvSnRgh~sI~v 84 (222)
+++++||++.|..| ++.|-...- ++|+.. ++...-+. +...+++.|+||+..||...|.. -+++
T Consensus 25 ~~~s~nG~~L~t~~--~d~Vi~idv-~t~~~~------l~s~~~ed------~d~ita~~l~~d~~~L~~a~rs~-llrv 88 (775)
T KOG0319|consen 25 VAWSSNGQHLYTAC--GDRVIIIDV-ATGSIA------LPSGSNED------EDEITALALTPDEEVLVTASRSQ-LLRV 88 (775)
T ss_pred eeECCCCCEEEEec--CceEEEEEc-cCCcee------cccCCccc------hhhhheeeecCCccEEEEeeccc-eEEE
Confidence 57899999999875 566666654 344332 22211111 14569999999999999998854 7999
Q ss_pred EEecCCCCCeEEEE
Q 027522 85 YNIEDPKNPVLTGQ 98 (222)
Q Consensus 85 f~i~d~~~~~L~~~ 98 (222)
|++.. ++++..
T Consensus 89 ~~L~t---gk~irs 99 (775)
T KOG0319|consen 89 WSLPT---GKLIRS 99 (775)
T ss_pred EEccc---chHhHh
Confidence 99943 456443
No 136
>KOG0299 consensus U3 snoRNP-associated protein (contains WD40 repeats) [RNA processing and modification]
Probab=88.50 E-value=9.5 Score=37.52 Aligned_cols=63 Identities=24% Similarity=0.203 Sum_probs=45.1
Q ss_pred ceeEEEEcCCCCEEEEEeCCCCcEEEEEecCCCC-CeEEEEEEecceeecCCceeeeeCCCCCCCCCCccccCcccCCCC
Q 027522 59 LITDFLISLDDRFLYFSNWLHGDIRQYNIEDPKN-PVLTGQIWVGGLFRKGSPVVAVTDDGQPYQSDVPEVQGHRLRGGP 137 (222)
Q Consensus 59 ~~adI~iSpDgrfLYvSnRgh~sI~vf~i~d~~~-~~L~~~v~~gG~~~~~~~~~~~~~~~~~~~p~~~~v~G~~~~ggP 137 (222)
..+.+.+.|--- |.+|.-+.|.|+.|.|.+... ..++..++.- |.-
T Consensus 382 Witsla~i~~sd-L~asGS~~G~vrLW~i~~g~r~i~~l~~ls~~--------------------------------GfV 428 (479)
T KOG0299|consen 382 WITSLAVIPGSD-LLASGSWSGCVRLWKIEDGLRAINLLYSLSLV--------------------------------GFV 428 (479)
T ss_pred ceeeeEecccCc-eEEecCCCCceEEEEecCCccccceeeecccc--------------------------------cEE
Confidence 467777777544 557777899999999976422 3444444443 336
Q ss_pred eeEEECCCCCEEEEEeC
Q 027522 138 QMIQLSLDGKRLYVTNS 154 (222)
Q Consensus 138 r~~~lspdGk~LyvaNs 154 (222)
+.++++++|+||+|+-.
T Consensus 429 Nsl~f~~sgk~ivagiG 445 (479)
T KOG0299|consen 429 NSLAFSNSGKRIVAGIG 445 (479)
T ss_pred EEEEEccCCCEEEEecc
Confidence 67899999999999974
No 137
>smart00135 LY Low-density lipoprotein-receptor YWTD domain. Type "B" repeats in low-density lipoprotein (LDL) receptor that plays a central role in mammalian cholesterol metabolism. Also present in a variety of molecules similar to gp300/megalin.
Probab=88.43 E-value=1.3 Score=27.29 Aligned_cols=31 Identities=19% Similarity=0.381 Sum_probs=27.5
Q ss_pred CceeEEEEcCCCCEEEEEeCCCCcEEEEEec
Q 027522 58 GLITDFLISLDDRFLYFSNWLHGDIRQYNIE 88 (222)
Q Consensus 58 ~~~adI~iSpDgrfLYvSnRgh~sI~vf~i~ 88 (222)
..+..|.++++++.||-+.+....|.+++++
T Consensus 9 ~~~~~la~d~~~~~lYw~D~~~~~I~~~~~~ 39 (43)
T smart00135 9 GHPNGLAVDWIEGRLYWTDWGLDVIEVANLD 39 (43)
T ss_pred CCcCEEEEeecCCEEEEEeCCCCEEEEEeCC
Confidence 3457899999999999999999999999884
No 138
>PF07676 PD40: WD40-like Beta Propeller Repeat; InterPro: IPR011659 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide. WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events. This region appears to be related to the IPR001680 from INTERPRO repeat. This model is likely to miss copies within a sequence.; PDB: 2HQS_D 1C5K_A 2IVZ_A 2W8B_D 3IAX_A 1CRZ_A 1N6F_D 1N6D_C 1N6E_C 1K32_A ....
Probab=88.37 E-value=1.4 Score=27.52 Aligned_cols=27 Identities=22% Similarity=0.327 Sum_probs=17.0
Q ss_pred ceeEEEEcCCCCEEEEEeCCC--CcEEEE
Q 027522 59 LITDFLISLDDRFLYFSNWLH--GDIRQY 85 (222)
Q Consensus 59 ~~adI~iSpDgrfLYvSnRgh--~sI~vf 85 (222)
.-....+|||||+||.+...+ +.--+|
T Consensus 10 ~~~~p~~SpDGk~i~f~s~~~~~g~~diy 38 (39)
T PF07676_consen 10 DDGSPAWSPDGKYIYFTSNRNDRGSFDIY 38 (39)
T ss_dssp SEEEEEE-TTSSEEEEEEECT--SSEEEE
T ss_pred cccCEEEecCCCEEEEEecCCCCCCcCEE
Confidence 347889999998887554444 444443
No 139
>KOG1063 consensus RNA polymerase II elongator complex, subunit ELP2, WD repeat superfamily [Chromatin structure and dynamics; Transcription]
Probab=88.19 E-value=1.8 Score=44.42 Aligned_cols=60 Identities=20% Similarity=0.195 Sum_probs=42.9
Q ss_pred ceeEEEEcCCCCEEEEEeC----CCCcEEEEEecCC-CCCeEEEEEEecceeecCCceeeeeCCCCCCCCCCccccCccc
Q 027522 59 LITDFLISLDDRFLYFSNW----LHGDIRQYNIEDP-KNPVLTGQIWVGGLFRKGSPVVAVTDDGQPYQSDVPEVQGHRL 133 (222)
Q Consensus 59 ~~adI~iSpDgrfLYvSnR----gh~sI~vf~i~d~-~~~~L~~~v~~gG~~~~~~~~~~~~~~~~~~~p~~~~v~G~~~ 133 (222)
..+++.+||+|.++--||| -|-.|++|..+.- ....|.++--+
T Consensus 527 Ev~~l~~s~~gnliASaCKS~~~ehAvI~lw~t~~W~~~~~L~~HsLT-------------------------------- 574 (764)
T KOG1063|consen 527 EVYALAISPTGNLIASACKSSLKEHAVIRLWNTANWLQVQELEGHSLT-------------------------------- 574 (764)
T ss_pred eEEEEEecCCCCEEeehhhhCCccceEEEEEeccchhhhheecccceE--------------------------------
Confidence 4789999999999999999 4678999987541 11122221111
Q ss_pred CCCCeeEEECCCCCEEEEEe
Q 027522 134 RGGPQMIQLSLDGKRLYVTN 153 (222)
Q Consensus 134 ~ggPr~~~lspdGk~LyvaN 153 (222)
--.+++|||||||+.+.
T Consensus 575 ---VT~l~FSpdg~~LLsvs 591 (764)
T KOG1063|consen 575 ---VTRLAFSPDGRYLLSVS 591 (764)
T ss_pred ---EEEEEECCCCcEEEEee
Confidence 23589999999999886
No 140
>KOG0286 consensus G-protein beta subunit [General function prediction only]
Probab=88.15 E-value=7.8 Score=36.47 Aligned_cols=69 Identities=19% Similarity=0.116 Sum_probs=42.6
Q ss_pred EEEcCCCCeEEEEeccCceEEEEEeCCCCCeeEEEEEEecCcccccccCCCCCCceeEEEEcCCCCEEEEEeCCCCcEEE
Q 027522 5 FLHDPSKDIGFVGCALASTMVRFSKTQDGSWNHEVAISVKSLKVQNWILPEMPGLITDFLISLDDRFLYFSNWLHGDIRQ 84 (222)
Q Consensus 5 ~afhP~g~~aYvv~ELsstV~~~~~d~~g~~~~~q~is~~p~~~~g~~~~~~~~~~adI~iSpDgrfLYvSnRgh~sI~v 84 (222)
..|+|+|. +|+.+-=++|.-.|...++-++ .+.+ ++. .+ ...+-+.+|..||.||+. -....+-+
T Consensus 235 v~ffP~G~-afatGSDD~tcRlyDlRaD~~~---a~ys--~~~---~~-----~gitSv~FS~SGRlLfag-y~d~~c~v 299 (343)
T KOG0286|consen 235 VRFFPSGD-AFATGSDDATCRLYDLRADQEL---AVYS--HDS---II-----CGITSVAFSKSGRLLFAG-YDDFTCNV 299 (343)
T ss_pred EEEccCCC-eeeecCCCceeEEEeecCCcEE---eeec--cCc---cc-----CCceeEEEcccccEEEee-ecCCceeE
Confidence 45888885 4555554777766665443112 2222 111 11 235889999999999987 45677888
Q ss_pred EEec
Q 027522 85 YNIE 88 (222)
Q Consensus 85 f~i~ 88 (222)
||.-
T Consensus 300 WDtl 303 (343)
T KOG0286|consen 300 WDTL 303 (343)
T ss_pred eecc
Confidence 9763
No 141
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=88.07 E-value=3.3 Score=40.06 Aligned_cols=59 Identities=19% Similarity=0.196 Sum_probs=41.6
Q ss_pred CCEEEEEeCCCCcEEEEEecCCCCCeEEEEEEecceeecCCceeeeeCCCCCCCCCCccccCcccCCCCeeEEECCCCCE
Q 027522 69 DRFLYFSNWLHGDIRQYNIEDPKNPVLTGQIWVGGLFRKGSPVVAVTDDGQPYQSDVPEVQGHRLRGGPQMIQLSLDGKR 148 (222)
Q Consensus 69 grfLYvSnRgh~sI~vf~i~d~~~~~L~~~v~~gG~~~~~~~~~~~~~~~~~~~p~~~~v~G~~~~ggPr~~~lspdGk~ 148 (222)
|+.|.++. ++.|..||++. .+++.+|.+.+ .+.+..|++|.+
T Consensus 117 G~LL~~~~--~~~i~~yDw~~---~~~i~~i~v~~---------------------------------vk~V~Ws~~g~~ 158 (443)
T PF04053_consen 117 GNLLGVKS--SDFICFYDWET---GKLIRRIDVSA---------------------------------VKYVIWSDDGEL 158 (443)
T ss_dssp SSSEEEEE--TTEEEEE-TTT-----EEEEESS-E----------------------------------EEEEE-TTSSE
T ss_pred CcEEEEEC--CCCEEEEEhhH---cceeeEEecCC---------------------------------CcEEEEECCCCE
Confidence 99998885 56799998853 67888887610 378999999999
Q ss_pred EEEEeCCCCccccccccccccCCcEEEEEEee
Q 027522 149 LYVTNSLFSAWDCQFYPELKEKGSHMLQIDVN 180 (222)
Q Consensus 149 LyvaNsl~~~wd~Q~yp~~~s~~~~i~~~dvd 180 (222)
+..+. +++..|++++.+
T Consensus 159 val~t---------------~~~i~il~~~~~ 175 (443)
T PF04053_consen 159 VALVT---------------KDSIYILKYNLE 175 (443)
T ss_dssp EEEE----------------S-SEEEEEE-HH
T ss_pred EEEEe---------------CCeEEEEEecch
Confidence 99998 578999998776
No 142
>KOG0639 consensus Transducin-like enhancer of split protein (contains WD40 repeats) [Chromatin structure and dynamics]
Probab=87.96 E-value=4.8 Score=40.39 Aligned_cols=63 Identities=14% Similarity=0.210 Sum_probs=45.6
Q ss_pred CceeEEEEcCCCCEEEEEeCCCCcEEEEEecCCCCCeEEEEEEecceeecCCceeeeeCCCCCCCCCCccccCcccCCCC
Q 027522 58 GLITDFLISLDDRFLYFSNWLHGDIRQYNIEDPKNPVLTGQIWVGGLFRKGSPVVAVTDDGQPYQSDVPEVQGHRLRGGP 137 (222)
Q Consensus 58 ~~~adI~iSpDgrfLYvSnRgh~sI~vf~i~d~~~~~L~~~v~~gG~~~~~~~~~~~~~~~~~~~p~~~~v~G~~~~ggP 137 (222)
|+...+.|+||||.|.|-.- ..++++||+..| ++++-.+...-+ -- =
T Consensus 466 nyiRSckL~pdgrtLivGGe-astlsiWDLAap-Tprikaeltssa---------------------------pa----C 512 (705)
T KOG0639|consen 466 NYIRSCKLLPDGRTLIVGGE-ASTLSIWDLAAP-TPRIKAELTSSA---------------------------PA----C 512 (705)
T ss_pred cceeeeEecCCCceEEeccc-cceeeeeeccCC-CcchhhhcCCcc---------------------------hh----h
Confidence 77899999999999999876 568999999653 344422222211 00 1
Q ss_pred eeEEECCCCCEEEEEe
Q 027522 138 QMIQLSLDGKRLYVTN 153 (222)
Q Consensus 138 r~~~lspdGk~LyvaN 153 (222)
..+++|||-|-.|.+.
T Consensus 513 yALa~spDakvcFscc 528 (705)
T KOG0639|consen 513 YALAISPDAKVCFSCC 528 (705)
T ss_pred hhhhcCCccceeeeec
Confidence 3678899999999998
No 143
>smart00135 LY Low-density lipoprotein-receptor YWTD domain. Type "B" repeats in low-density lipoprotein (LDL) receptor that plays a central role in mammalian cholesterol metabolism. Also present in a variety of molecules similar to gp300/megalin.
Probab=87.55 E-value=1.8 Score=26.59 Aligned_cols=30 Identities=17% Similarity=0.162 Sum_probs=23.9
Q ss_pred CCeeEEECCCCCEEEEEeCCCCccccccccccccCCcEEEEEEee
Q 027522 136 GPQMIQLSLDGKRLYVTNSLFSAWDCQFYPELKEKGSHMLQIDVN 180 (222)
Q Consensus 136 gPr~~~lspdGk~LyvaNsl~~~wd~Q~yp~~~s~~~~i~~~dvd 180 (222)
.|+.+++++.+++||-++ . ....|.+.+.|
T Consensus 10 ~~~~la~d~~~~~lYw~D--------~-------~~~~I~~~~~~ 39 (43)
T smart00135 10 HPNGLAVDWIEGRLYWTD--------W-------GLDVIEVANLD 39 (43)
T ss_pred CcCEEEEeecCCEEEEEe--------C-------CCCEEEEEeCC
Confidence 399999999999999999 3 34666666664
No 144
>PF01731 Arylesterase: Arylesterase; InterPro: IPR002640 The serum paraoxonases/arylesterases are enzymes that catalyse the hydrolysis of the toxic metabolites of a variety of organophosphorus insecticides. The enzymes hydrolyse a broad spectrum of organophosphate substrates, including paraoxon and a number of aromatic carboxylic acid esters (e.g., phenyl acetate), and hence confer resistance to organophosphate toxicity []. Mammals have 3 distinct paraoxonase types, termed PON1-3 [, ]. In mice and humans, the PON genes are found on the same chromosome in close proximity. PON activity has been found in variety of tissues, with highest levels in liver and serum - the source of serum PON is thought to be the liver. Unlike mammals, fish and avian species lack paraoxonase activity. Human and rabbit PONs appear to have two distinct Ca2+ binding sites, one required for stability and one required for catalytic activity. The Ca2+ dependency of PONs suggests a mechanism of hydrolysis where Ca2+ acts as the electrophillic catalyst, like that proposed for phospholipase A2. The paraoxonase enzymes, PON1 and PON3, are high density lipoprotein (HDL)- associated proteins capable of preventing oxidative modification of low density lipoproteins (LPL) []. Although PON2 has oxidative properties, the enzyme does not associate with HDL. Within a given species, PON1, PON2 and PON3 share ~60% amino acid sequence identity, whereas between mammalian species particular PONs (1,2 or 3) share 79-90% identity at the amino acid level. Human PON1 and PON3 share numerous conserved phosphorylation and N-glycosylation sites; however, it is not known whether the PON proteins are modified at these sites, or whether modification at these sites is required for activity in vivo []. This family consists of arylesterases (Also known as serum paraoxonase) 3.1.1.2 from EC. These enzymes hydrolyse organophosphorus esters such as paraoxon and are found in the liver and blood. They confer resistance to organophosphate toxicity []. Human arylesterase (PON1) P27169 from SWISSPROT is associated with HDL and may protect against LDL oxidation [].; GO: 0004064 arylesterase activity
Probab=87.51 E-value=1 Score=34.31 Aligned_cols=18 Identities=39% Similarity=0.381 Sum_probs=16.8
Q ss_pred CCeeEEECCCCCEEEEEe
Q 027522 136 GPQMIQLSLDGKRLYVTN 153 (222)
Q Consensus 136 gPr~~~lspdGk~LyvaN 153 (222)
.|+-+++|||+|+||||.
T Consensus 55 ~aNGI~~s~~~k~lyVa~ 72 (86)
T PF01731_consen 55 FANGIAISPDKKYLYVAS 72 (86)
T ss_pred CCceEEEcCCCCEEEEEe
Confidence 389999999999999998
No 145
>KOG0282 consensus mRNA splicing factor [Function unknown]
Probab=87.46 E-value=4.5 Score=39.94 Aligned_cols=104 Identities=11% Similarity=0.095 Sum_probs=66.1
Q ss_pred EEEcCCCCeEEEEeccCceEEEEEeCCCCCeeEEEEEEecCcccccccCCCCCCceeEEEEcCCCCEEEEEeCCCCcEEE
Q 027522 5 FLHDPSKDIGFVGCALASTMVRFSKTQDGSWNHEVAISVKSLKVQNWILPEMPGLITDFLISLDDRFLYFSNWLHGDIRQ 84 (222)
Q Consensus 5 ~afhP~g~~aYvv~ELsstV~~~~~d~~g~~~~~q~is~~p~~~~g~~~~~~~~~~adI~iSpDgrfLYvSnRgh~sI~v 84 (222)
+.|=|+|++.-...| +++|.+|.+... ...+.|.-+ .+.+| -.|.++|.|+|+-+-+ ..+-|++
T Consensus 348 i~F~~~g~rFissSD-dks~riWe~~~~---v~ik~i~~~-------~~hsm----P~~~~~P~~~~~~aQs-~dN~i~i 411 (503)
T KOG0282|consen 348 ITFVDEGRRFISSSD-DKSVRIWENRIP---VPIKNIADP-------EMHTM----PCLTLHPNGKWFAAQS-MDNYIAI 411 (503)
T ss_pred eEEccCCceEeeecc-CccEEEEEcCCC---ccchhhcch-------hhccC----cceecCCCCCeehhhc-cCceEEE
Confidence 467778877666666 557777766421 111221111 11222 2578999999986555 6789999
Q ss_pred EEecCCCCCeEEEEEEecceeecCCceeeeeCCCCCCCCCCccccCcccCCCCeeEEECCCCCEEEEEe
Q 027522 85 YNIEDPKNPVLTGQIWVGGLFRKGSPVVAVTDDGQPYQSDVPEVQGHRLRGGPQMIQLSLDGKRLYVTN 153 (222)
Q Consensus 85 f~i~d~~~~~L~~~v~~gG~~~~~~~~~~~~~~~~~~~p~~~~v~G~~~~ggPr~~~lspdGk~LyvaN 153 (222)
|.+..+..... -++ -.|..+.|-+=.+.+||||++|.-.+
T Consensus 412 fs~~~~~r~nk-kK~----------------------------feGh~vaGys~~v~fSpDG~~l~SGd 451 (503)
T KOG0282|consen 412 FSTVPPFRLNK-KKR----------------------------FEGHSVAGYSCQVDFSPDGRTLCSGD 451 (503)
T ss_pred EecccccccCH-hhh----------------------------hcceeccCceeeEEEcCCCCeEEeec
Confidence 99854432211 001 13677778888999999999999888
No 146
>PLN00181 protein SPA1-RELATED; Provisional
Probab=87.26 E-value=30 Score=35.11 Aligned_cols=70 Identities=9% Similarity=0.081 Sum_probs=39.9
Q ss_pred eEEEcCCCCeEEEEeccCceEEEEEeCCCCCeeEEEEEEecCcccccccCCCCCCceeEEEEcC-CCCEEEEEeCCCCcE
Q 027522 4 RFLHDPSKDIGFVGCALASTMVRFSKTQDGSWNHEVAISVKSLKVQNWILPEMPGLITDFLISL-DDRFLYFSNWLHGDI 82 (222)
Q Consensus 4 r~afhP~g~~aYvv~ELsstV~~~~~d~~g~~~~~q~is~~p~~~~g~~~~~~~~~~adI~iSp-DgrfLYvSnRgh~sI 82 (222)
.++|+|..+...+.+-.+.+|.+|... .++ ....+ .+. ......|.++| |+.+|. |.-.++.|
T Consensus 537 ~l~~~~~~~~~las~~~Dg~v~lWd~~-~~~--~~~~~-------~~H-----~~~V~~l~~~p~~~~~L~-Sgs~Dg~v 600 (793)
T PLN00181 537 GICWNSYIKSQVASSNFEGVVQVWDVA-RSQ--LVTEM-------KEH-----EKRVWSIDYSSADPTLLA-SGSDDGSV 600 (793)
T ss_pred eEEeccCCCCEEEEEeCCCeEEEEECC-CCe--EEEEe-------cCC-----CCCEEEEEEcCCCCCEEE-EEcCCCEE
Confidence 356666533333444457788877653 221 11111 111 03468999997 666664 44467899
Q ss_pred EEEEecC
Q 027522 83 RQYNIED 89 (222)
Q Consensus 83 ~vf~i~d 89 (222)
.+|++..
T Consensus 601 ~iWd~~~ 607 (793)
T PLN00181 601 KLWSINQ 607 (793)
T ss_pred EEEECCC
Confidence 9999953
No 147
>KOG2048 consensus WD40 repeat protein [General function prediction only]
Probab=87.17 E-value=11 Score=38.75 Aligned_cols=107 Identities=10% Similarity=0.058 Sum_probs=62.5
Q ss_pred EEEcCCCCeEEEEeccCceEEEEEeCCCCCeeEEEEEEecCcccccccCCCCCCceeEEEEcCCCCEEEEEeCCCCcEEE
Q 027522 5 FLHDPSKDIGFVGCALASTMVRFSKTQDGSWNHEVAISVKSLKVQNWILPEMPGLITDFLISLDDRFLYFSNWLHGDIRQ 84 (222)
Q Consensus 5 ~afhP~g~~aYvv~ELsstV~~~~~d~~g~~~~~q~is~~p~~~~g~~~~~~~~~~adI~iSpDgrfLYvSnRgh~sI~v 84 (222)
.+-+|+|++.-+..-..=+|+++.++ +....+.+-..+... -.++.|.++-|+.-|++..--+.++-.
T Consensus 388 ~aiSPdg~~Ia~st~~~~~iy~L~~~--~~vk~~~v~~~~~~~----------~~a~~i~ftid~~k~~~~s~~~~~le~ 455 (691)
T KOG2048|consen 388 AAISPDGNLIAISTVSRTKIYRLQPD--PNVKVINVDDVPLAL----------LDASAISFTIDKNKLFLVSKNIFSLEE 455 (691)
T ss_pred eccCCCCCEEEEeeccceEEEEeccC--cceeEEEeccchhhh----------ccceeeEEEecCceEEEEecccceeEE
Confidence 35689998888777766677777774 344433333332111 125789999888776655544556666
Q ss_pred EEecCCCCCeEEEEEEecceeecCCceeeeeCCCCCCCCCCccccCcccCCCCeeEEECCCCCEEEEEe
Q 027522 85 YNIEDPKNPVLTGQIWVGGLFRKGSPVVAVTDDGQPYQSDVPEVQGHRLRGGPQMIQLSLDGKRLYVTN 153 (222)
Q Consensus 85 f~i~d~~~~~L~~~v~~gG~~~~~~~~~~~~~~~~~~~p~~~~v~G~~~~ggPr~~~lspdGk~LyvaN 153 (222)
|+.+.|..-.|.+..+. +. +. .=-.++.|+||.||.|++
T Consensus 456 ~el~~ps~kel~~~~~~---------------------~~---~~------~I~~l~~SsdG~yiaa~~ 494 (691)
T KOG2048|consen 456 FELETPSFKELKSIQSQ---------------------AK---CP------SISRLVVSSDGNYIAAIS 494 (691)
T ss_pred EEecCcchhhhhccccc---------------------cC---CC------cceeEEEcCCCCEEEEEe
Confidence 65543322223211111 10 01 124689999999999998
No 148
>KOG0645 consensus WD40 repeat protein [General function prediction only]
Probab=87.10 E-value=26 Score=32.73 Aligned_cols=115 Identities=15% Similarity=0.232 Sum_probs=69.8
Q ss_pred EEEcCC-CCeEEEEeccCceEEEEEeCCCCCeeEEEEEEecCcccccccCCCCCCceeEEEEcCCCCEEEEEeCCCCcEE
Q 027522 5 FLHDPS-KDIGFVGCALASTMVRFSKTQDGSWNHEVAISVKSLKVQNWILPEMPGLITDFLISLDDRFLYFSNWLHGDIR 83 (222)
Q Consensus 5 ~afhP~-g~~aYvv~ELsstV~~~~~d~~g~~~~~q~is~~p~~~~g~~~~~~~~~~adI~iSpDgrfLYvSnRgh~sI~ 83 (222)
+++||. |. .+.-|--+.+|-.+.......|+-+.+++ +..+ .....|+-||.||+|-+... +.++.
T Consensus 20 ~awhp~~g~-ilAscg~Dk~vriw~~~~~~s~~ck~vld---~~hk--------rsVRsvAwsp~g~~La~aSF-D~t~~ 86 (312)
T KOG0645|consen 20 VAWHPGKGV-ILASCGTDKAVRIWSTSSGDSWTCKTVLD---DGHK--------RSVRSVAWSPHGRYLASASF-DATVV 86 (312)
T ss_pred EEeccCCce-EEEeecCCceEEEEecCCCCcEEEEEecc---ccch--------heeeeeeecCCCcEEEEeec-cceEE
Confidence 689998 55 44445557777777654334676665543 2111 44689999999998865554 56788
Q ss_pred EEEecCCCCCeEEEEEEecceeecCCceeeeeCCCCCCCCCCccccCcccCCCCeeEEECCCCCEEEEEeCCCCcccccc
Q 027522 84 QYNIEDPKNPVLTGQIWVGGLFRKGSPVVAVTDDGQPYQSDVPEVQGHRLRGGPQMIQLSLDGKRLYVTNSLFSAWDCQF 163 (222)
Q Consensus 84 vf~i~d~~~~~L~~~v~~gG~~~~~~~~~~~~~~~~~~~p~~~~v~G~~~~ggPr~~~lspdGk~LyvaNsl~~~wd~Q~ 163 (222)
+|.-.+ +.-+-+..+. |. . ---.-++.|++|.+|--|. .
T Consensus 87 Iw~k~~-~efecv~~lE--GH---------------------------E--nEVK~Vaws~sG~~LATCS--------R- 125 (312)
T KOG0645|consen 87 IWKKED-GEFECVATLE--GH---------------------------E--NEVKCVAWSASGNYLATCS--------R- 125 (312)
T ss_pred EeecCC-CceeEEeeee--cc---------------------------c--cceeEEEEcCCCCEEEEee--------C-
Confidence 886543 2222322222 11 0 0034679999999886665 4
Q ss_pred ccccccCCcEEEEEE
Q 027522 164 YPELKEKGSHMLQID 178 (222)
Q Consensus 164 yp~~~s~~~~i~~~d 178 (222)
.++..|..+|
T Consensus 126 -----DKSVWiWe~d 135 (312)
T KOG0645|consen 126 -----DKSVWIWEID 135 (312)
T ss_pred -----CCeEEEEEec
Confidence 2567777775
No 149
>KOG4497 consensus Uncharacterized conserved protein WDR8, contains WD repeats [General function prediction only]
Probab=87.02 E-value=1.9 Score=41.18 Aligned_cols=99 Identities=14% Similarity=0.113 Sum_probs=64.5
Q ss_pred EEEEEecCcccccccCCCCCCceeEEEEcCCCCEEEEEeCCCCcEEEEEecCCCCCeEEEEEEecceeecCCceeeeeCC
Q 027522 38 EVAISVKSLKVQNWILPEMPGLITDFLISLDDRFLYFSNWLHGDIRQYNIEDPKNPVLTGQIWVGGLFRKGSPVVAVTDD 117 (222)
Q Consensus 38 ~q~is~~p~~~~g~~~~~~~~~~adI~iSpDgrfLYvSnRgh~sI~vf~i~d~~~~~L~~~v~~gG~~~~~~~~~~~~~~ 117 (222)
.|+.++...+..- ...+.++..+.|.-|||||.+-...--|-.|.||.+.. .++.++.....
T Consensus 73 vqvwsl~Qpew~c-kIdeg~agls~~~WSPdgrhiL~tseF~lriTVWSL~t-~~~~~~~~pK~---------------- 134 (447)
T KOG4497|consen 73 VQVWSLVQPEWYC-KIDEGQAGLSSISWSPDGRHILLTSEFDLRITVWSLNT-QKGYLLPHPKT---------------- 134 (447)
T ss_pred EEEEEeecceeEE-EeccCCCcceeeeECCCcceEeeeecceeEEEEEEecc-ceeEEeccccc----------------
Confidence 3555655433321 12334577899999999999998887888999999943 44555322222
Q ss_pred CCCCCCCCccccCcccCCCCeeEEECCCCCEEEEEeCCCCccccccccccccCCcEEEE
Q 027522 118 GQPYQSDVPEVQGHRLRGGPQMIQLSLDGKRLYVTNSLFSAWDCQFYPELKEKGSHMLQ 176 (222)
Q Consensus 118 ~~~~~p~~~~v~G~~~~ggPr~~~lspdGk~LyvaNsl~~~wd~Q~yp~~~s~~~~i~~ 176 (222)
+-+-.++.|||++.-++ ++-|+.+|=..-+-..+++.
T Consensus 135 ------------------~~kg~~f~~dg~f~ai~----sRrDCkdyv~i~~c~~W~ll 171 (447)
T KOG4497|consen 135 ------------------NVKGYAFHPDGQFCAIL----SRRDCKDYVQISSCKAWILL 171 (447)
T ss_pred ------------------CceeEEECCCCceeeee----ecccHHHHHHHHhhHHHHHH
Confidence 13457999999987555 46688877665544444444
No 150
>KOG2106 consensus Uncharacterized conserved protein, contains HELP and WD40 domains [Function unknown]
Probab=86.88 E-value=12 Score=37.57 Aligned_cols=32 Identities=19% Similarity=0.225 Sum_probs=26.5
Q ss_pred CceeEEEEcCCCCEEEEEeCCCCcEEEEEecCC
Q 027522 58 GLITDFLISLDDRFLYFSNWLHGDIRQYNIEDP 90 (222)
Q Consensus 58 ~~~adI~iSpDgrfLYvSnRgh~sI~vf~i~d~ 90 (222)
+..+.++.||||-||-|..- .+.|-+|.|++.
T Consensus 448 ~~ls~v~ysp~G~~lAvgs~-d~~iyiy~Vs~~ 479 (626)
T KOG2106|consen 448 EQLSVVRYSPDGAFLAVGSH-DNHIYIYRVSAN 479 (626)
T ss_pred CceEEEEEcCCCCEEEEecC-CCeEEEEEECCC
Confidence 34689999999999998763 578999999653
No 151
>PF06977 SdiA-regulated: SdiA-regulated; InterPro: IPR009722 This entry represents a conserved region approximately 100 residues long within a number of hypothetical bacterial proteins that may be regulated by SdiA, a member of the LuxR family of transcriptional regulators []. Some proteins contain the IPR001258 from INTERPRO repeat.; PDB: 3QQZ_A.
Probab=86.87 E-value=23 Score=31.79 Aligned_cols=107 Identities=15% Similarity=0.179 Sum_probs=62.1
Q ss_pred EEEcCCCCeEEEEeccCceEEEEEeCCCCCeeEEEEEEecCcccccccCCCCCCceeEEEEcCCCCEEEEEeCCCCcEEE
Q 027522 5 FLHDPSKDIGFVGCALASTMVRFSKTQDGSWNHEVAISVKSLKVQNWILPEMPGLITDFLISLDDRFLYFSNWLHGDIRQ 84 (222)
Q Consensus 5 ~afhP~g~~aYvv~ELsstV~~~~~d~~g~~~~~q~is~~p~~~~g~~~~~~~~~~adI~iSpDgrfLYvSnRgh~sI~v 84 (222)
++|+|+.+..|+++=-...|+.+.. +|+ .++.+.+.. +. -.=+|...-+|+|+-++.|. +.+.+
T Consensus 27 LTy~pd~~tLfaV~d~~~~i~els~--~G~--vlr~i~l~g--~~---------D~EgI~y~g~~~~vl~~Er~-~~L~~ 90 (248)
T PF06977_consen 27 LTYNPDTGTLFAVQDEPGEIYELSL--DGK--VLRRIPLDG--FG---------DYEGITYLGNGRYVLSEERD-QRLYI 90 (248)
T ss_dssp EEEETTTTEEEEEETTTTEEEEEET--T----EEEEEE-SS---S---------SEEEEEE-STTEEEEEETTT-TEEEE
T ss_pred cEEcCCCCeEEEEECCCCEEEEEcC--CCC--EEEEEeCCC--CC---------CceeEEEECCCEEEEEEcCC-CcEEE
Confidence 6899998777777666888877765 464 356666532 21 13578888999999888775 58999
Q ss_pred EEecCCCCCeE---EEEEEecceeecCCceeeeeCCCCCCCCCCccccCcccCCCCeeEEECCCCCEEEEEe
Q 027522 85 YNIEDPKNPVL---TGQIWVGGLFRKGSPVVAVTDDGQPYQSDVPEVQGHRLRGGPQMIQLSLDGKRLYVTN 153 (222)
Q Consensus 85 f~i~d~~~~~L---~~~v~~gG~~~~~~~~~~~~~~~~~~~p~~~~v~G~~~~ggPr~~~lspdGk~LyvaN 153 (222)
|++++.....- +.++.++-. ..+.. |-.-++.+|.+++|||+.
T Consensus 91 ~~~~~~~~~~~~~~~~~~~l~~~-----------------------~~~N~---G~EGla~D~~~~~L~v~k 136 (248)
T PF06977_consen 91 FTIDDDTTSLDRADVQKISLGFP-----------------------NKGNK---GFEGLAYDPKTNRLFVAK 136 (248)
T ss_dssp EEE----TT--EEEEEEEE---S--------------------------SS-----EEEEEETTTTEEEEEE
T ss_pred EEEeccccccchhhceEEecccc-----------------------cCCCc---ceEEEEEcCCCCEEEEEe
Confidence 99954322111 123333100 00111 245689999999999997
No 152
>KOG0296 consensus Angio-associated migratory cell protein (contains WD40 repeats) [Function unknown]
Probab=86.81 E-value=25 Score=33.97 Aligned_cols=78 Identities=13% Similarity=0.064 Sum_probs=40.6
Q ss_pred CCCeEEEEeccCceEEEEEeCCCCCeeEEE------EEEecCcccccccCCCCCCceeEEEEcCCCCEEEEEeCCCCcEE
Q 027522 10 SKDIGFVGCALASTMVRFSKTQDGSWNHEV------AISVKSLKVQNWILPEMPGLITDFLISLDDRFLYFSNWLHGDIR 83 (222)
Q Consensus 10 ~g~~aYvv~ELsstV~~~~~d~~g~~~~~q------~is~~p~~~~g~~~~~~~~~~adI~iSpDgrfLYvSnRgh~sI~ 83 (222)
+|.++|-+.|-.-+|+.+.+.-+|++-+.. .+.-...+..-+.+.+.-+-..=+.-+|-+++|.+-+ -+++|+
T Consensus 95 ~ge~~~eltgHKDSVt~~~FshdgtlLATGdmsG~v~v~~~stg~~~~~~~~e~~dieWl~WHp~a~illAG~-~DGsvW 173 (399)
T KOG0296|consen 95 TGEFAGELTGHKDSVTCCSFSHDGTLLATGDMSGKVLVFKVSTGGEQWKLDQEVEDIEWLKWHPRAHILLAGS-TDGSVW 173 (399)
T ss_pred CCcceeEecCCCCceEEEEEccCceEEEecCCCccEEEEEcccCceEEEeecccCceEEEEecccccEEEeec-CCCcEE
Confidence 355666666666777777665444433321 1110111111111110001223356788888887655 589999
Q ss_pred EEEec
Q 027522 84 QYNIE 88 (222)
Q Consensus 84 vf~i~ 88 (222)
+|.|.
T Consensus 174 mw~ip 178 (399)
T KOG0296|consen 174 MWQIP 178 (399)
T ss_pred EEECC
Confidence 99994
No 153
>PF09826 Beta_propel: Beta propeller domain; InterPro: IPR019198 This entry consists of predicted secreted proteins containing a C-terminal beta-propeller domain distantly related to WD-40 repeats.
Probab=86.73 E-value=5.2 Score=39.53 Aligned_cols=57 Identities=26% Similarity=0.424 Sum_probs=44.7
Q ss_pred eEEEEcCCCCEEEEEeCCCCcEEEEEecCCCCCeEEEEEEecceeecCCceeeeeCCCCCCCCCCccccCcccCCCCeeE
Q 027522 61 TDFLISLDDRFLYFSNWLHGDIRQYNIEDPKNPVLTGQIWVGGLFRKGSPVVAVTDDGQPYQSDVPEVQGHRLRGGPQMI 140 (222)
Q Consensus 61 adI~iSpDgrfLYvSnRgh~sI~vf~i~d~~~~~L~~~v~~gG~~~~~~~~~~~~~~~~~~~p~~~~v~G~~~~ggPr~~ 140 (222)
+||+= -||++||+.+ .+.|.++++.+++..+++++|...|. |+.|
T Consensus 15 aDiVK-TDG~yIY~v~--~~~l~Iida~p~~~~~~~s~I~~~~~--------------------------------~~eL 59 (521)
T PF09826_consen 15 ADIVK-TDGEYIYVVS--GGRLYIIDAYPAEEMKVVSRIDLDGS--------------------------------PQEL 59 (521)
T ss_pred CcEEE-ECCCEEEEEe--CCEEEEEECCCchhceEEEEEecCCC--------------------------------hhhe
Confidence 78866 5999999999 48899999965677888888887331 7777
Q ss_pred EECCCCCEEEEEeC
Q 027522 141 QLSLDGKRLYVTNS 154 (222)
Q Consensus 141 ~lspdGk~LyvaNs 154 (222)
=| +|.+|.|--+
T Consensus 60 yl--~gdrLvVi~~ 71 (521)
T PF09826_consen 60 YL--DGDRLVVIGS 71 (521)
T ss_pred EE--cCCEEEEEEe
Confidence 77 7778887653
No 154
>KOG2314 consensus Translation initiation factor 3, subunit b (eIF-3b) [Translation, ribosomal structure and biogenesis]
Probab=86.20 E-value=6.4 Score=39.86 Aligned_cols=119 Identities=14% Similarity=0.212 Sum_probs=69.7
Q ss_pred EeEEEcCCCCeEEEE--eccCceEEEEEeCC-CCCeeEEEEEEecCcccccccCCCCCCceeEEEEcCCCCEEEEEeCC-
Q 027522 3 IRFLHDPSKDIGFVG--CALASTMVRFSKTQ-DGSWNHEVAISVKSLKVQNWILPEMPGLITDFLISLDDRFLYFSNWL- 78 (222)
Q Consensus 3 vr~afhP~g~~aYvv--~ELsstV~~~~~d~-~g~~~~~q~is~~p~~~~g~~~~~~~~~~adI~iSpDgrfLYvSnRg- 78 (222)
+-|++.|.|...-++ |+-.++|..|+... .+++.+.+.+ ++ ..+..+-.||.|||+-+.+-.
T Consensus 449 i~FaWEP~gdkF~vi~g~~~k~tvsfY~~e~~~~~~~lVk~~---dk-----------~~~N~vfwsPkG~fvvva~l~s 514 (698)
T KOG2314|consen 449 IAFAWEPHGDKFAVISGNTVKNTVSFYAVETNIKKPSLVKEL---DK-----------KFANTVFWSPKGRFVVVAALVS 514 (698)
T ss_pred eeeeeccCCCeEEEEEccccccceeEEEeecCCCchhhhhhh---cc-----------cccceEEEcCCCcEEEEEEecc
Confidence 347778887665554 44556677776642 2334332222 11 234789999999999998876
Q ss_pred -CCcEEEEEecCCCCCeEEEEEEecceeecCCceeeeeCCCCCCCCCCccccCcccCCCCeeEEECCCCCEEEEEeCCCC
Q 027522 79 -HGDIRQYNIEDPKNPVLTGQIWVGGLFRKGSPVVAVTDDGQPYQSDVPEVQGHRLRGGPQMIQLSLDGKRLYVTNSLFS 157 (222)
Q Consensus 79 -h~sI~vf~i~d~~~~~L~~~v~~gG~~~~~~~~~~~~~~~~~~~p~~~~v~G~~~~ggPr~~~lspdGk~LyvaNsl~~ 157 (222)
.+++.-||.+- +..+.+ . .|+.. +-..+..+|+|||+..+. |
T Consensus 515 ~~g~l~F~D~~~-a~~k~~---~---------------------~~eh~---------~at~veWDPtGRYvvT~s---s 557 (698)
T KOG2314|consen 515 RRGDLEFYDTDY-ADLKDT---A---------------------SPEHF---------AATEVEWDPTGRYVVTSS---S 557 (698)
T ss_pred cccceEEEecch-hhhhhc---c---------------------Ccccc---------ccccceECCCCCEEEEee---e
Confidence 67788777642 122221 1 11110 134567899999887665 4
Q ss_pred ccccccccccccCCcEEEEE
Q 027522 158 AWDCQFYPELKEKGSHMLQI 177 (222)
Q Consensus 158 ~wd~Q~yp~~~s~~~~i~~~ 177 (222)
-|-..- .+|-.|+-+
T Consensus 558 ~wrhk~-----d~GYri~tf 572 (698)
T KOG2314|consen 558 SWRHKV-----DNGYRIFTF 572 (698)
T ss_pred hhhhcc-----ccceEEEEe
Confidence 554443 456666655
No 155
>PF02333 Phytase: Phytase; InterPro: IPR003431 Phytase (3.1.3.8 from EC) (phytate 3-phosphatase) is a secreted enzyme which hydrolyses phytate to release inorganic phosphate. This family appears to represent a novel enzyme that shows phytase activity () and has been shown to consist of a single structural unit with a six-bladed propeller folding architecture ().; GO: 0016158 3-phytase activity; PDB: 3AMS_A 3AMR_A 1QLG_A 2POO_A 1H6L_A 1CVM_A 1POO_A.
Probab=85.85 E-value=18 Score=34.74 Aligned_cols=78 Identities=22% Similarity=0.337 Sum_probs=49.0
Q ss_pred eeEEEE--cC-CCCEEEEEeCCCCcEEEEEecCCCCCeE----EEEEEecceeecCCceeeeeCCCCCCCCCCccccCcc
Q 027522 60 ITDFLI--SL-DDRFLYFSNWLHGDIRQYNIEDPKNPVL----TGQIWVGGLFRKGSPVVAVTDDGQPYQSDVPEVQGHR 132 (222)
Q Consensus 60 ~adI~i--Sp-DgrfLYvSnRgh~sI~vf~i~d~~~~~L----~~~v~~gG~~~~~~~~~~~~~~~~~~~p~~~~v~G~~ 132 (222)
+..+.+ |+ +|++--.-|+-++.+.||.+.+.+++++ +.+..++ ..
T Consensus 158 ~yGlcly~~~~~g~~ya~v~~k~G~~~Qy~L~~~~~g~v~~~lVR~f~~~----------------------------sQ 209 (381)
T PF02333_consen 158 PYGLCLYRSPSTGALYAFVNGKDGRVEQYELTDDGDGKVSATLVREFKVG----------------------------SQ 209 (381)
T ss_dssp EEEEEEEE-TTT--EEEEEEETTSEEEEEEEEE-TTSSEEEEEEEEEE-S----------------------------S-
T ss_pred ceeeEEeecCCCCcEEEEEecCCceEEEEEEEeCCCCcEeeEEEEEecCC----------------------------Cc
Confidence 456665 44 5775445566678999999976555544 4444331 12
Q ss_pred cCCCCeeEEECCCCCEEEEEeCCCCccccccccccccCCcEEEEEEeeCCCCC
Q 027522 133 LRGGPQMIQLSLDGKRLYVTNSLFSAWDCQFYPELKEKGSHMLQIDVNSEKGG 185 (222)
Q Consensus 133 ~~ggPr~~~lspdGk~LyvaNsl~~~wd~Q~yp~~~s~~~~i~~~dvd~~~G~ 185 (222)
|.-+..+..-.+||++= | +.-|-+++.+++.|.
T Consensus 210 ----~EGCVVDDe~g~LYvgE--------E--------~~GIW~y~Aep~~~~ 242 (381)
T PF02333_consen 210 ----PEGCVVDDETGRLYVGE--------E--------DVGIWRYDAEPEGGN 242 (381)
T ss_dssp ----EEEEEEETTTTEEEEEE--------T--------TTEEEEEESSCCC-S
T ss_pred ----ceEEEEecccCCEEEec--------C--------ccEEEEEecCCCCCC
Confidence 77788888888999985 3 566777788877764
No 156
>KOG0918 consensus Selenium-binding protein [Inorganic ion transport and metabolism]
Probab=85.79 E-value=4.2 Score=39.67 Aligned_cols=70 Identities=20% Similarity=0.224 Sum_probs=44.5
Q ss_pred EEEcCCCCeEEEEeccCceEEEEEeC-C-C----CCeeEE---------EEEE-----ec--CcccccccCCCCCCceeE
Q 027522 5 FLHDPSKDIGFVGCALASTMVRFSKT-Q-D----GSWNHE---------VAIS-----VK--SLKVQNWILPEMPGLITD 62 (222)
Q Consensus 5 ~afhP~g~~aYvv~ELsstV~~~~~d-~-~----g~~~~~---------q~is-----~~--p~~~~g~~~~~~~~~~ad 62 (222)
++.+=|-++.||.|=|-..|..|.-. . + |+.-.- ++.. .+ +..+.|..+. +.+.=
T Consensus 317 ilISmDDRFLYvs~WLHGDirQYdIsDP~n~kLtgQi~lGG~i~~~s~vkvl~~e~~~~~~ea~~vKGrkl~---GGPQM 393 (476)
T KOG0918|consen 317 ILISLDDRFLYVSNWLHGDIRQYDISDPKNPKLTGQIFLGGSIQKGSPVKVLEEEGLKKQPEALYVKGRKLR---GGPQM 393 (476)
T ss_pred eEEeecCcEEEEEeeeecceeeeccCCCCCcceEEEEEECcEeecCCceEEeccccccCCCccceecCcccc---CCcee
Confidence 56677899999999999999888652 2 1 211111 1110 11 1112233222 56788
Q ss_pred EEEcCCCCEEEEEeC
Q 027522 63 FLISLDDRFLYFSNW 77 (222)
Q Consensus 63 I~iSpDgrfLYvSnR 77 (222)
|.||.||+.|||+|-
T Consensus 394 lQLSLDGKRLYVt~S 408 (476)
T KOG0918|consen 394 LQLSLDGKRLYVTNS 408 (476)
T ss_pred EEeccCCcEEEEEch
Confidence 999999999999996
No 157
>KOG0640 consensus mRNA cleavage stimulating factor complex; subunit 1 [RNA processing and modification]
Probab=85.65 E-value=9.2 Score=36.52 Aligned_cols=67 Identities=21% Similarity=0.285 Sum_probs=47.0
Q ss_pred EEEcCCCCeEEEEeccCceEEEEEeCCCCCeeEEEEEEecCcc-cccccCCCCCCceeEEEEcCCCCEEEEEeCCCCcEE
Q 027522 5 FLHDPSKDIGFVGCALASTMVRFSKTQDGSWNHEVAISVKSLK-VQNWILPEMPGLITDFLISLDDRFLYFSNWLHGDIR 83 (222)
Q Consensus 5 ~afhP~g~~aYvv~ELsstV~~~~~d~~g~~~~~q~is~~p~~-~~g~~~~~~~~~~adI~iSpDgrfLYvSnRgh~sI~ 83 (222)
+.|||.|.++-|..+- .++-+|.-+ +.+--++.-|.+ .+ ...+.++-|+.|+ |||..--+|.|.
T Consensus 222 iSfHPsGefllvgTdH-p~~rlYdv~-----T~QcfvsanPd~qht--------~ai~~V~Ys~t~~-lYvTaSkDG~Ik 286 (430)
T KOG0640|consen 222 ISFHPSGEFLLVGTDH-PTLRLYDVN-----TYQCFVSANPDDQHT--------GAITQVRYSSTGS-LYVTASKDGAIK 286 (430)
T ss_pred EeecCCCceEEEecCC-CceeEEecc-----ceeEeeecCcccccc--------cceeEEEecCCcc-EEEEeccCCcEE
Confidence 6799999999999884 555555442 112223333322 22 4578999999998 799998999999
Q ss_pred EEE
Q 027522 84 QYN 86 (222)
Q Consensus 84 vf~ 86 (222)
.||
T Consensus 287 lwD 289 (430)
T KOG0640|consen 287 LWD 289 (430)
T ss_pred eec
Confidence 995
No 158
>KOG2048 consensus WD40 repeat protein [General function prediction only]
Probab=85.61 E-value=9 Score=39.25 Aligned_cols=31 Identities=26% Similarity=0.433 Sum_probs=27.2
Q ss_pred CceeEEEEcCCCCEEEEEeCCCCcEEEEEecC
Q 027522 58 GLITDFLISLDDRFLYFSNWLHGDIRQYNIED 89 (222)
Q Consensus 58 ~~~adI~iSpDgrfLYvSnRgh~sI~vf~i~d 89 (222)
+..+-|.+|+||.|+-|++ ..+.|-+|++..
T Consensus 476 ~~I~~l~~SsdG~yiaa~~-t~g~I~v~nl~~ 506 (691)
T KOG2048|consen 476 PSISRLVVSSDGNYIAAIS-TRGQIFVYNLET 506 (691)
T ss_pred CcceeEEEcCCCCEEEEEe-ccceEEEEEccc
Confidence 5679999999999999999 778899998853
No 159
>KOG0288 consensus WD40 repeat protein TipD [General function prediction only]
Probab=85.21 E-value=6.7 Score=38.27 Aligned_cols=83 Identities=14% Similarity=0.160 Sum_probs=54.1
Q ss_pred CCCceeEEEEcCCCCEEEEEeCCCCcEEEEEecCCCCCeEEEEEEecceeecCCceeeeeCCCCCCCCCCccccCcccCC
Q 027522 56 MPGLITDFLISLDDRFLYFSNWLHGDIRQYNIEDPKNPVLTGQIWVGGLFRKGSPVVAVTDDGQPYQSDVPEVQGHRLRG 135 (222)
Q Consensus 56 ~~~~~adI~iSpDgrfLYvSnRgh~sI~vf~i~d~~~~~L~~~v~~gG~~~~~~~~~~~~~~~~~~~p~~~~v~G~~~~g 135 (222)
+.+..+.+-+|+||+-|-.|.| +|.+-+++... ....+.....|... +..
T Consensus 340 ~gg~vtSl~ls~~g~~lLsssR-Ddtl~viDlRt---~eI~~~~sA~g~k~-----------------------asD--- 389 (459)
T KOG0288|consen 340 LGGRVTSLDLSMDGLELLSSSR-DDTLKVIDLRT---KEIRQTFSAEGFKC-----------------------ASD--- 389 (459)
T ss_pred cCcceeeEeeccCCeEEeeecC-CCceeeeeccc---ccEEEEeecccccc-----------------------ccc---
Confidence 3366799999999999999976 67899987732 11222223322211 111
Q ss_pred CCeeEEECCCCCEEEEEeCCCCccccccccccccCCcEEEEEEeeCCCCCee
Q 027522 136 GPQMIQLSLDGKRLYVTNSLFSAWDCQFYPELKEKGSHMLQIDVNSEKGGMA 187 (222)
Q Consensus 136 gPr~~~lspdGk~LyvaNsl~~~wd~Q~yp~~~s~~~~i~~~dvd~~~G~l~ 187 (222)
=.-.+|||||.|+.+.. -+..++..++ .+|++.
T Consensus 390 -wtrvvfSpd~~YvaAGS----------------~dgsv~iW~v--~tgKlE 422 (459)
T KOG0288|consen 390 -WTRVVFSPDGSYVAAGS----------------ADGSVYIWSV--FTGKLE 422 (459)
T ss_pred -cceeEECCCCceeeecc----------------CCCcEEEEEc--cCceEE
Confidence 23479999999886665 3567777766 677763
No 160
>KOG0646 consensus WD40 repeat protein [General function prediction only]
Probab=84.93 E-value=18 Score=35.64 Aligned_cols=106 Identities=17% Similarity=0.150 Sum_probs=64.3
Q ss_pred eEEEcCCCCeEEEEeccCceEEEEEeCCCCCeeEEEEEEecC-cccccccCCCCCCceeEEEEcCCC--CEEEEEeCCCC
Q 027522 4 RFLHDPSKDIGFVGCALASTMVRFSKTQDGSWNHEVAISVKS-LKVQNWILPEMPGLITDFLISLDD--RFLYFSNWLHG 80 (222)
Q Consensus 4 r~afhP~g~~aYvv~ELsstV~~~~~d~~g~~~~~q~is~~p-~~~~g~~~~~~~~~~adI~iSpDg--rfLYvSnRgh~ 80 (222)
.+.|+-||.+.+...- ++.|.+|... ....+.+.-++.| -.+.+..+ ..+|+.|++-| -.||.+. .+.
T Consensus 128 cL~fs~dgs~iiTgsk-Dg~V~vW~l~--~lv~a~~~~~~~p~~~f~~Htl-----sITDl~ig~Gg~~~rl~TaS-~D~ 198 (476)
T KOG0646|consen 128 CLKFSDDGSHIITGSK-DGAVLVWLLT--DLVSADNDHSVKPLHIFSDHTL-----SITDLQIGSGGTNARLYTAS-EDR 198 (476)
T ss_pred EEEEeCCCcEEEecCC-CccEEEEEEE--eecccccCCCccceeeeccCcc-----eeEEEEecCCCccceEEEec-CCc
Confidence 3678888888777654 6667776541 0111111112222 11223322 26899998764 4555554 467
Q ss_pred cEEEEEecCCCCCeEEEEEEecceeecCCceeeeeCCCCCCCCCCccccCcccCCCCeeEEECCCCCEEEEEe
Q 027522 81 DIRQYNIEDPKNPVLTGQIWVGGLFRKGSPVVAVTDDGQPYQSDVPEVQGHRLRGGPQMIQLSLDGKRLYVTN 153 (222)
Q Consensus 81 sI~vf~i~d~~~~~L~~~v~~gG~~~~~~~~~~~~~~~~~~~p~~~~v~G~~~~ggPr~~~lspdGk~LyvaN 153 (222)
.|.+|+++. +.|.-++.. |+ . +..++++|-++++|+.+
T Consensus 199 t~k~wdlS~---g~LLlti~f----p~------------------------s----i~av~lDpae~~~yiGt 236 (476)
T KOG0646|consen 199 TIKLWDLSL---GVLLLTITF----PS------------------------S----IKAVALDPAERVVYIGT 236 (476)
T ss_pred eEEEEEecc---ceeeEEEec----CC------------------------c----ceeEEEcccccEEEecC
Confidence 899999965 566545443 11 1 67899999999999999
No 161
>KOG2139 consensus WD40 repeat protein [General function prediction only]
Probab=84.73 E-value=19 Score=34.96 Aligned_cols=117 Identities=15% Similarity=0.154 Sum_probs=64.2
Q ss_pred EEEcCCCCeEEEEeccCceEEEEEeCCCCCeeEEEEEEecCcccccccCCCCCCceeEEEEcCCCCEEEEEeCCCCcEEE
Q 027522 5 FLHDPSKDIGFVGCALASTMVRFSKTQDGSWNHEVAISVKSLKVQNWILPEMPGLITDFLISLDDRFLYFSNWLHGDIRQ 84 (222)
Q Consensus 5 ~afhP~g~~aYvv~ELsstV~~~~~d~~g~~~~~q~is~~p~~~~g~~~~~~~~~~adI~iSpDgrfLYvSnRgh~sI~v 84 (222)
+..++||...-...=-+++|.++..+ +| +-+.+++... ...+-++-||||.+|+++.- +...++
T Consensus 201 mqwn~dgt~l~tAS~gsssi~iWdpd-tg-----~~~pL~~~gl---------gg~slLkwSPdgd~lfaAt~-davfrl 264 (445)
T KOG2139|consen 201 MQWNEDGTILVTASFGSSSIMIWDPD-TG-----QKIPLIPKGL---------GGFSLLKWSPDGDVLFAATC-DAVFRL 264 (445)
T ss_pred EEEcCCCCEEeecccCcceEEEEcCC-CC-----CcccccccCC---------CceeeEEEcCCCCEEEEecc-cceeee
Confidence 34555555544444445556666553 22 1223333322 34478999999999998753 444555
Q ss_pred EEecCCCCCeEEEEEEecceeecCCceeeeeCCCCCCCCCCccccCcccCCCCeeEEECCCCCEEEEEeCCCCccccccc
Q 027522 85 YNIEDPKNPVLTGQIWVGGLFRKGSPVVAVTDDGQPYQSDVPEVQGHRLRGGPQMIQLSLDGKRLYVTNSLFSAWDCQFY 164 (222)
Q Consensus 85 f~i~d~~~~~L~~~v~~gG~~~~~~~~~~~~~~~~~~~p~~~~v~G~~~~ggPr~~~lspdGk~LyvaNsl~~~wd~Q~y 164 (222)
|.-.. -.-..+..+| .| + -+.-..||+|++|+.+.
T Consensus 265 w~e~q---~wt~erw~lg--------------------------sg-r----vqtacWspcGsfLLf~~----------- 299 (445)
T KOG2139|consen 265 WQENQ---SWTKERWILG--------------------------SG-R----VQTACWSPCGSFLLFAC----------- 299 (445)
T ss_pred ehhcc---cceecceecc--------------------------CC-c----eeeeeecCCCCEEEEEE-----------
Confidence 53322 1111111111 12 2 44558899999999998
Q ss_pred cccccCCcEEEEEEeeCCCCCe
Q 027522 165 PELKEKGSHMLQIDVNSEKGGM 186 (222)
Q Consensus 165 p~~~s~~~~i~~~dvd~~~G~l 186 (222)
+..-.++....+.+.+..
T Consensus 300 ----sgsp~lysl~f~~~~~~~ 317 (445)
T KOG2139|consen 300 ----SGSPRLYSLTFDGEDSVF 317 (445)
T ss_pred ----cCCceEEEEeecCCCccc
Confidence 455666665555555544
No 162
>PF00400 WD40: WD domain, G-beta repeat; InterPro: IPR019781 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide. WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events.; PDB: 2ZKQ_a 3CFV_B 3CFS_B 1PEV_A 1NR0_A 1VYH_T 3RFH_A 3O2Z_T 3FRX_C 3U5G_g ....
Probab=84.53 E-value=3.4 Score=24.99 Aligned_cols=28 Identities=29% Similarity=0.382 Sum_probs=23.8
Q ss_pred CceeEEEEcCCCCEEEEEeCCCCcEEEEE
Q 027522 58 GLITDFLISLDDRFLYFSNWLHGDIRQYN 86 (222)
Q Consensus 58 ~~~adI~iSpDgrfLYvSnRgh~sI~vf~ 86 (222)
....+|.++|++++|.++. .++.|.+|+
T Consensus 12 ~~i~~i~~~~~~~~~~s~~-~D~~i~vwd 39 (39)
T PF00400_consen 12 SSINSIAWSPDGNFLASGS-SDGTIRVWD 39 (39)
T ss_dssp SSEEEEEEETTSSEEEEEE-TTSEEEEEE
T ss_pred CcEEEEEEecccccceeeC-CCCEEEEEC
Confidence 4579999999999998887 477899985
No 163
>KOG0279 consensus G protein beta subunit-like protein [Signal transduction mechanisms]
Probab=84.17 E-value=10 Score=35.48 Aligned_cols=103 Identities=12% Similarity=0.241 Sum_probs=62.2
Q ss_pred EEEcCCCCeEEEEeccCceEEEEEeCCCCCeeEEEEEEecCcccccccCCCCCCceeEEEEcCCCCEEEEEeCCCCcEEE
Q 027522 5 FLHDPSKDIGFVGCALASTMVRFSKTQDGSWNHEVAISVKSLKVQNWILPEMPGLITDFLISLDDRFLYFSNWLHGDIRQ 84 (222)
Q Consensus 5 ~afhP~g~~aYvv~ELsstV~~~~~d~~g~~~~~q~is~~p~~~~g~~~~~~~~~~adI~iSpDgrfLYvSnRgh~sI~v 84 (222)
++++|||..+-- .+-+.++..+..++... +-.+.. . .....|.+||.--+|-+.. ..+|.+
T Consensus 198 ~~vSpDGslcas-Ggkdg~~~LwdL~~~k~------lysl~a----~------~~v~sl~fspnrywL~~at--~~sIkI 258 (315)
T KOG0279|consen 198 VTVSPDGSLCAS-GGKDGEAMLWDLNEGKN------LYSLEA----F------DIVNSLCFSPNRYWLCAAT--ATSIKI 258 (315)
T ss_pred EEECCCCCEEec-CCCCceEEEEEccCCce------eEeccC----C------CeEeeEEecCCceeEeecc--CCceEE
Confidence 578899877655 34477788877653222 112211 1 3358999999988887664 567999
Q ss_pred EEecCCCCCeEEEEEEecceeecCCceeeeeCCCCCCCCCCccccCcccCCCCeeE--EECCCCCEEEEEe
Q 027522 85 YNIEDPKNPVLTGQIWVGGLFRKGSPVVAVTDDGQPYQSDVPEVQGHRLRGGPQMI--QLSLDGKRLYVTN 153 (222)
Q Consensus 85 f~i~d~~~~~L~~~v~~gG~~~~~~~~~~~~~~~~~~~p~~~~v~G~~~~ggPr~~--~lspdGk~LyvaN 153 (222)
|+.+. .+.+......++-+ ..+ .+.|+.+ +.|+||..||..-
T Consensus 259 wdl~~---~~~v~~l~~d~~g~--------------------s~~----~~~~~clslaws~dG~tLf~g~ 302 (315)
T KOG0279|consen 259 WDLES---KAVVEELKLDGIGP--------------------SSK----AGDPICLSLAWSADGQTLFAGY 302 (315)
T ss_pred Eeccc---hhhhhhcccccccc--------------------ccc----cCCcEEEEEEEcCCCcEEEeee
Confidence 98843 33333333322211 011 2237765 5588899999886
No 164
>COG3490 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=84.15 E-value=7.5 Score=36.70 Aligned_cols=58 Identities=10% Similarity=0.103 Sum_probs=34.7
Q ss_pred EEcCCCCeEEEEec-cCce---EEEEEeCCCCCeeEEEEEEecCcccccccCCCCCCceeEEEEcCCCCEEEEEeC
Q 027522 6 LHDPSKDIGFVGCA-LAST---MVRFSKTQDGSWNHEVAISVKSLKVQNWILPEMPGLITDFLISLDDRFLYFSNW 77 (222)
Q Consensus 6 afhP~g~~aYvv~E-Lsst---V~~~~~d~~g~~~~~q~is~~p~~~~g~~~~~~~~~~adI~iSpDgrfLYvSnR 77 (222)
+|||+|+++|...- .+.. |=+|..+ -.++..-.+++- | -.+-++.+.+|||.|-+.|-
T Consensus 120 vfs~dG~~LYATEndfd~~rGViGvYd~r--~~fqrvgE~~t~-----G-------iGpHev~lm~DGrtlvvanG 181 (366)
T COG3490 120 VFSPDGRLLYATENDFDPNRGVIGVYDAR--EGFQRVGEFSTH-----G-------IGPHEVTLMADGRTLVVANG 181 (366)
T ss_pred ccCCCCcEEEeecCCCCCCCceEEEEecc--cccceecccccC-----C-------cCcceeEEecCCcEEEEeCC
Confidence 68999999997532 2222 3333322 223222222211 1 22589999999999999996
No 165
>KOG2394 consensus WD40 protein DMR-N9 [General function prediction only]
Probab=84.09 E-value=2.6 Score=42.27 Aligned_cols=72 Identities=10% Similarity=0.040 Sum_probs=48.1
Q ss_pred EEEcCCCCeEEEEeccCceEEEEEeCCCCCeeEEEEEEecCcccccccCCCCCCceeEEEEcCCCCEEEEEeCCCCcEEE
Q 027522 5 FLHDPSKDIGFVGCALASTMVRFSKTQDGSWNHEVAISVKSLKVQNWILPEMPGLITDFLISLDDRFLYFSNWLHGDIRQ 84 (222)
Q Consensus 5 ~afhP~g~~aYvv~ELsstV~~~~~d~~g~~~~~q~is~~p~~~~g~~~~~~~~~~adI~iSpDgrfLYvSnRgh~sI~v 84 (222)
|+|+|||+++-++.+ +..+-+|+++.. ++. -+--.-|.| ---+.-||||||+-+- --+|=|.|
T Consensus 296 f~FS~DG~~LA~VSq-DGfLRvF~fdt~---eLl---g~mkSYFGG---------LLCvcWSPDGKyIvtG-GEDDLVtV 358 (636)
T KOG2394|consen 296 FAFSPDGKYLATVSQ-DGFLRIFDFDTQ---ELL---GVMKSYFGG---------LLCVCWSPDGKYIVTG-GEDDLVTV 358 (636)
T ss_pred eeEcCCCceEEEEec-CceEEEeeccHH---HHH---HHHHhhccc---------eEEEEEcCCccEEEec-CCcceEEE
Confidence 799999999999998 788888888632 111 111111222 2557789999998554 34566889
Q ss_pred EEecCCCCCeEE
Q 027522 85 YNIEDPKNPVLT 96 (222)
Q Consensus 85 f~i~d~~~~~L~ 96 (222)
|.+.+ .++|
T Consensus 359 wSf~e---rRVV 367 (636)
T KOG2394|consen 359 WSFEE---RRVV 367 (636)
T ss_pred EEecc---ceEE
Confidence 98854 4554
No 166
>KOG0271 consensus Notchless-like WD40 repeat-containing protein [Function unknown]
Probab=84.02 E-value=6.1 Score=38.42 Aligned_cols=68 Identities=10% Similarity=0.213 Sum_probs=47.7
Q ss_pred eEEEcCCCCeEEEEeccCceEEEEEeCCCCCeeEEEEEEecCcccccccCCCCCCceeEEEEcCCCCEEEEEeCCCCcEE
Q 027522 4 RFLHDPSKDIGFVGCALASTMVRFSKTQDGSWNHEVAISVKSLKVQNWILPEMPGLITDFLISLDDRFLYFSNWLHGDIR 83 (222)
Q Consensus 4 r~afhP~g~~aYvv~ELsstV~~~~~d~~g~~~~~q~is~~p~~~~g~~~~~~~~~~adI~iSpDgrfLYvSnRgh~sI~ 83 (222)
-..|+||++++-... .+.+|-.+.-. +|++ +++. .|.. +..+.|+-|.|-|.| ||+--+.++-
T Consensus 372 ~V~fSPd~r~IASaS-FDkSVkLW~g~-tGk~-----lasf----RGHv-----~~VYqvawsaDsRLl-VS~SkDsTLK 434 (480)
T KOG0271|consen 372 HVSFSPDGRYIASAS-FDKSVKLWDGR-TGKF-----LASF----RGHV-----AAVYQVAWSADSRLL-VSGSKDSTLK 434 (480)
T ss_pred eEEECCCccEEEEee-cccceeeeeCC-Ccch-----hhhh----hhcc-----ceeEEEEeccCccEE-EEcCCCceEE
Confidence 357999998765443 57777777543 4543 2222 3331 346899999999977 8888899999
Q ss_pred EEEec
Q 027522 84 QYNIE 88 (222)
Q Consensus 84 vf~i~ 88 (222)
+|+|.
T Consensus 435 vw~V~ 439 (480)
T KOG0271|consen 435 VWDVR 439 (480)
T ss_pred EEEee
Confidence 99994
No 167
>KOG0647 consensus mRNA export protein (contains WD40 repeats) [RNA processing and modification]
Probab=83.92 E-value=16 Score=34.63 Aligned_cols=71 Identities=13% Similarity=0.154 Sum_probs=53.0
Q ss_pred EEEcCCCCeEEEEeccCceEEEEEeCCCCCeeEEEEEEecCcccccccCCCCCCceeEEEEcCCCCEEEEEeCCCCcEEE
Q 027522 5 FLHDPSKDIGFVGCALASTMVRFSKTQDGSWNHEVAISVKSLKVQNWILPEMPGLITDFLISLDDRFLYFSNWLHGDIRQ 84 (222)
Q Consensus 5 ~afhP~g~~aYvv~ELsstV~~~~~d~~g~~~~~q~is~~p~~~~g~~~~~~~~~~adI~iSpDgrfLYvSnRgh~sI~v 84 (222)
++|+|....+.+..--+++|-.|....+|.+..+...+. ..-.-++.-|-||.-+|.+. -++++..
T Consensus 33 l~FSP~~~~~~~A~SWD~tVR~wevq~~g~~~~ka~~~~-------------~~PvL~v~WsddgskVf~g~-~Dk~~k~ 98 (347)
T KOG0647|consen 33 LAFSPQADNLLAAGSWDGTVRIWEVQNSGQLVPKAQQSH-------------DGPVLDVCWSDDGSKVFSGG-CDKQAKL 98 (347)
T ss_pred eEeccccCceEEecccCCceEEEEEecCCcccchhhhcc-------------CCCeEEEEEccCCceEEeec-cCCceEE
Confidence 789998888888888899999988765565544322222 13357899999999998776 4788999
Q ss_pred EEecC
Q 027522 85 YNIED 89 (222)
Q Consensus 85 f~i~d 89 (222)
||+..
T Consensus 99 wDL~S 103 (347)
T KOG0647|consen 99 WDLAS 103 (347)
T ss_pred EEccC
Confidence 99953
No 168
>PF01436 NHL: NHL repeat; InterPro: IPR001258 The NHL repeat, named after NCL-1, HT2A and Lin-41, is found largely in a large number of eukaryotic and prokaryotic proteins. For example, the repeat is found in a variety of enzymes of the copper type II, ascorbate-dependent monooxygenase family which catalyse the C terminus alpha-amidation of biological peptides []. In many it occurs in tandem arrays, for example in the ringfinger beta-box, coiled-coil (RBCC) eukaryotic growth regulators []. The 'Brain Tumor' protein (Brat) is one such growth regulator that contains a 6-bladed NHL-repeat beta-propeller [, ]. The NHL repeats are also found in serine/threonine protein kinase (STPK) in diverse range of pathogenic bacteria. These STPK are transmembrane receptors with a intracellular N-terminal kinase domain and extracellular C-terminal sensor domain. In the STPK, PknD, from Mycobacterium tuberculosis, the sensor domain forms a rigid, six-bladed b-propeller composed of NHL repeats with a flexible tether to the transmembrane domain.; GO: 0005515 protein binding; PDB: 3FVZ_A 3FW0_A 1RWL_A 1RWI_A 1Q7F_A.
Probab=83.34 E-value=3.9 Score=24.40 Aligned_cols=26 Identities=8% Similarity=0.192 Sum_probs=21.8
Q ss_pred ceeEEEEcCCCCEEEEEeCCCCcEEEE
Q 027522 59 LITDFLISLDDRFLYFSNWLHGDIRQY 85 (222)
Q Consensus 59 ~~adI~iSpDgrfLYvSnRgh~sI~vf 85 (222)
.+.+|.++ ++-.|||+.++...|.+|
T Consensus 3 ~P~gvav~-~~g~i~VaD~~n~rV~vf 28 (28)
T PF01436_consen 3 YPHGVAVD-SDGNIYVADSGNHRVQVF 28 (28)
T ss_dssp SEEEEEEE-TTSEEEEEECCCTEEEEE
T ss_pred CCcEEEEe-CCCCEEEEECCCCEEEEC
Confidence 46899999 556788999999999887
No 169
>PF15492 Nbas_N: Neuroblastoma-amplified sequence, N terminal
Probab=82.88 E-value=11 Score=34.78 Aligned_cols=59 Identities=19% Similarity=0.198 Sum_probs=40.0
Q ss_pred EEEcCCCCEEEEEeCCCCcEEEEEecCCCCCeEEEEEEecceeecCCceeeeeCCCCCCCCCCccccCcccCCCC--eeE
Q 027522 63 FLISLDDRFLYFSNWLHGDIRQYNIEDPKNPVLTGQIWVGGLFRKGSPVVAVTDDGQPYQSDVPEVQGHRLRGGP--QMI 140 (222)
Q Consensus 63 I~iSpDgrfLYvSnRgh~sI~vf~i~d~~~~~L~~~v~~gG~~~~~~~~~~~~~~~~~~~p~~~~v~G~~~~ggP--r~~ 140 (222)
++++.|||.|-+- .+++.-.+-..++=...+++..+ ++| .. | |-+
T Consensus 3 ~~~~~~Gk~lAi~---qd~~iEiRsa~Ddf~si~~kcqV----pkD----------------------~~----PQWRkl 49 (282)
T PF15492_consen 3 LALSSDGKLLAIL---QDQCIEIRSAKDDFSSIIGKCQV----PKD----------------------PN----PQWRKL 49 (282)
T ss_pred eeecCCCcEEEEE---eccEEEEEeccCCchheeEEEec----CCC----------------------CC----chheEE
Confidence 6789999999875 46666565544333445566654 221 11 3 779
Q ss_pred EECCCCCEEEEEeC
Q 027522 141 QLSLDGKRLYVTNS 154 (222)
Q Consensus 141 ~lspdGk~LyvaNs 154 (222)
+.|||+..|..|+|
T Consensus 50 ~WSpD~tlLa~a~S 63 (282)
T PF15492_consen 50 AWSPDCTLLAYAES 63 (282)
T ss_pred EECCCCcEEEEEcC
Confidence 99999999999984
No 170
>COG5354 Uncharacterized protein, contains Trp-Asp (WD) repeat [General function prediction only]
Probab=82.84 E-value=23 Score=35.49 Aligned_cols=96 Identities=15% Similarity=0.192 Sum_probs=58.5
Q ss_pred EEEcCCCCeEEEEe-ccCceEEEEEeCCCCCeeEEEEEEecCcccccccCCCCCCceeEEEEcCCCCEEEEEeCC--CCc
Q 027522 5 FLHDPSKDIGFVGC-ALASTMVRFSKTQDGSWNHEVAISVKSLKVQNWILPEMPGLITDFLISLDDRFLYFSNWL--HGD 81 (222)
Q Consensus 5 ~afhP~g~~aYvv~-ELsstV~~~~~d~~g~~~~~q~is~~p~~~~g~~~~~~~~~~adI~iSpDgrfLYvSnRg--h~s 81 (222)
|+|+|.++..=|+. -+.+++..|... |.+ + ...|+.-. -.|.+||-+|+.-++..+ .++
T Consensus 280 f~W~p~S~~F~vi~g~~pa~~s~~~lr--~Nl----~-~~~Pe~~r-----------NT~~fsp~~r~il~agF~nl~gn 341 (561)
T COG5354 280 FTWEPLSSRFAVISGYMPASVSVFDLR--GNL----R-FYFPEQKR-----------NTIFFSPHERYILFAGFDNLQGN 341 (561)
T ss_pred eeecccCCceeEEecccccceeecccc--cce----E-EecCCccc-----------ccccccCcccEEEEecCCccccc
Confidence 55666665555554 566666666443 221 2 22222212 357899999999998875 699
Q ss_pred EEEEEecCCCCCeEEEEEEecceeecCCceeeeeCCCCCCCCCCccccCcccCCCCeeEEECCCCCEEEEEe
Q 027522 82 IRQYNIEDPKNPVLTGQIWVGGLFRKGSPVVAVTDDGQPYQSDVPEVQGHRLRGGPQMIQLSLDGKRLYVTN 153 (222)
Q Consensus 82 I~vf~i~d~~~~~L~~~v~~gG~~~~~~~~~~~~~~~~~~~p~~~~v~G~~~~ggPr~~~lspdGk~LyvaN 153 (222)
|-+|+.. ++-+.++.+.. .. -+-...||||.+++++.
T Consensus 342 i~i~~~~--~rf~~~~~~~~-----------------------------~n----~s~~~wspd~qF~~~~~ 378 (561)
T COG5354 342 IEIFDPA--GRFKVAGAFNG-----------------------------LN----TSYCDWSPDGQFYDTDT 378 (561)
T ss_pred eEEeccC--CceEEEEEeec-----------------------------CC----ceEeeccCCceEEEecC
Confidence 9999763 33344333332 11 34556799999999886
No 171
>KOG2321 consensus WD40 repeat protein [General function prediction only]
Probab=82.70 E-value=1.7 Score=43.99 Aligned_cols=35 Identities=26% Similarity=0.450 Sum_probs=30.8
Q ss_pred CCCCceeEEEEcCCCCEEEEEeCCCCcEEEEEecC
Q 027522 55 EMPGLITDFLISLDDRFLYFSNWLHGDIRQYNIED 89 (222)
Q Consensus 55 ~~~~~~adI~iSpDgrfLYvSnRgh~sI~vf~i~d 89 (222)
+||..++.|.+||||+||.++.-=.=.|.+|++..
T Consensus 49 e~p~ast~ik~s~DGqY~lAtG~YKP~ikvydlan 83 (703)
T KOG2321|consen 49 EMPTASTRIKVSPDGQYLLATGTYKPQIKVYDLAN 83 (703)
T ss_pred CCccccceeEecCCCcEEEEecccCCceEEEEccc
Confidence 47788999999999999999987778899999854
No 172
>KOG3881 consensus Uncharacterized conserved protein [Function unknown]
Probab=82.61 E-value=3.6 Score=39.65 Aligned_cols=62 Identities=16% Similarity=0.239 Sum_probs=46.7
Q ss_pred CceeEEEEcCCCCEEEEEeCCCCcEEEEEecCCCCCeEEEEEEecceeecCCceeeeeCCCCCCCCCCccccCcccCCCC
Q 027522 58 GLITDFLISLDDRFLYFSNWLHGDIRQYNIEDPKNPVLTGQIWVGGLFRKGSPVVAVTDDGQPYQSDVPEVQGHRLRGGP 137 (222)
Q Consensus 58 ~~~adI~iSpDgrfLYvSnRgh~sI~vf~i~d~~~~~L~~~v~~gG~~~~~~~~~~~~~~~~~~~p~~~~v~G~~~~ggP 137 (222)
+..+.+.+-|+|.|+|+.| -++.++.||+.. ++|.+.-. +.+.|++
T Consensus 248 ~~is~~~l~p~gn~Iy~gn-~~g~l~~FD~r~---~kl~g~~~------------------------------kg~tGsi 293 (412)
T KOG3881|consen 248 NPISSTGLTPSGNFIYTGN-TKGQLAKFDLRG---GKLLGCGL------------------------------KGITGSI 293 (412)
T ss_pred CcceeeeecCCCcEEEEec-ccchhheecccC---ceeecccc------------------------------CCccCCc
Confidence 5678999999999999999 478899998843 55632211 1245679
Q ss_pred eeEEECCCCCEEEEEe
Q 027522 138 QMIQLSLDGKRLYVTN 153 (222)
Q Consensus 138 r~~~lspdGk~LyvaN 153 (222)
|.+...|.+++|..|-
T Consensus 294 rsih~hp~~~~las~G 309 (412)
T KOG3881|consen 294 RSIHCHPTHPVLASCG 309 (412)
T ss_pred ceEEEcCCCceEEeec
Confidence 9999999998776554
No 173
>KOG0289 consensus mRNA splicing factor [General function prediction only]
Probab=82.56 E-value=42 Score=33.23 Aligned_cols=59 Identities=19% Similarity=0.275 Sum_probs=41.1
Q ss_pred eeEEEEcCCCCEEEEEeCCCCcEEEEEecCCCCCeEEEEEEecceeecCCceeeeeCCCCCCCCCCccccCcccCCCCee
Q 027522 60 ITDFLISLDDRFLYFSNWLHGDIRQYNIEDPKNPVLTGQIWVGGLFRKGSPVVAVTDDGQPYQSDVPEVQGHRLRGGPQM 139 (222)
Q Consensus 60 ~adI~iSpDgrfLYvSnRgh~sI~vf~i~d~~~~~L~~~v~~gG~~~~~~~~~~~~~~~~~~~p~~~~v~G~~~~ggPr~ 139 (222)
.+.+.++|||- |++..-.++.|.+|++..+.+ +.+.+ |.. |--+.
T Consensus 350 ~ts~~fHpDgL-ifgtgt~d~~vkiwdlks~~~---~a~Fp-----------------------------ght--~~vk~ 394 (506)
T KOG0289|consen 350 YTSAAFHPDGL-IFGTGTPDGVVKIWDLKSQTN---VAKFP-----------------------------GHT--GPVKA 394 (506)
T ss_pred eEEeeEcCCce-EEeccCCCceEEEEEcCCccc---cccCC-----------------------------CCC--CceeE
Confidence 47789999996 457777789999999965321 11111 211 11478
Q ss_pred EEECCCCCEEEEEe
Q 027522 140 IQLSLDGKRLYVTN 153 (222)
Q Consensus 140 ~~lspdGk~LyvaN 153 (222)
+++|-+|-||.++.
T Consensus 395 i~FsENGY~Lat~a 408 (506)
T KOG0289|consen 395 ISFSENGYWLATAA 408 (506)
T ss_pred EEeccCceEEEEEe
Confidence 99999999999997
No 174
>KOG2394 consensus WD40 protein DMR-N9 [General function prediction only]
Probab=82.39 E-value=1.6 Score=43.72 Aligned_cols=29 Identities=24% Similarity=0.477 Sum_probs=22.6
Q ss_pred ceeEEEEcCCCCEEEEEeCCCCcEEEEEec
Q 027522 59 LITDFLISLDDRFLYFSNWLHGDIRQYNIE 88 (222)
Q Consensus 59 ~~adI~iSpDgrfLYvSnRgh~sI~vf~i~ 88 (222)
.+-.+..||||++|-+=. -++-+++|+-+
T Consensus 292 ~in~f~FS~DG~~LA~VS-qDGfLRvF~fd 320 (636)
T KOG2394|consen 292 SINEFAFSPDGKYLATVS-QDGFLRIFDFD 320 (636)
T ss_pred cccceeEcCCCceEEEEe-cCceEEEeecc
Confidence 456899999999996333 36789999884
No 175
>KOG3881 consensus Uncharacterized conserved protein [Function unknown]
Probab=81.89 E-value=5.6 Score=38.43 Aligned_cols=80 Identities=18% Similarity=0.267 Sum_probs=52.5
Q ss_pred CCCceeEEEEcCC-CCEEEEEeCCCCcEEEEEecCCCCCeEEEEEEecceeecCCceeeeeCCCCCCCCCCccccCcccC
Q 027522 56 MPGLITDFLISLD-DRFLYFSNWLHGDIRQYNIEDPKNPVLTGQIWVGGLFRKGSPVVAVTDDGQPYQSDVPEVQGHRLR 134 (222)
Q Consensus 56 ~~~~~adI~iSpD-grfLYvSnRgh~sI~vf~i~d~~~~~L~~~v~~gG~~~~~~~~~~~~~~~~~~~p~~~~v~G~~~~ 134 (222)
+|-..++|.+-++ ..+-+|.+-..+.++.||+...-+| +.++... ..
T Consensus 201 VPvW~tdi~Fl~g~~~~~fat~T~~hqvR~YDt~~qRRP--V~~fd~~----------------------------E~-- 248 (412)
T KOG3881|consen 201 VPVWITDIRFLEGSPNYKFATITRYHQVRLYDTRHQRRP--VAQFDFL----------------------------EN-- 248 (412)
T ss_pred eeeeeccceecCCCCCceEEEEecceeEEEecCcccCcc--eeEeccc----------------------------cC--
Confidence 5677889987665 3555555555668999988532233 4444442 11
Q ss_pred CCCeeEEECCCCCEEEEEeCCCCccccccccccccCCcEEEEEEeeCCCCCe
Q 027522 135 GGPQMIQLSLDGKRLYVTNSLFSAWDCQFYPELKEKGSHMLQIDVNSEKGGM 186 (222)
Q Consensus 135 ggPr~~~lspdGk~LyvaNsl~~~wd~Q~yp~~~s~~~~i~~~dvd~~~G~l 186 (222)
.=-.+.+.|+|+++|++|+ ...|..||. .+|.+
T Consensus 249 -~is~~~l~p~gn~Iy~gn~----------------~g~l~~FD~--r~~kl 281 (412)
T KOG3881|consen 249 -PISSTGLTPSGNFIYTGNT----------------KGQLAKFDL--RGGKL 281 (412)
T ss_pred -cceeeeecCCCcEEEEecc----------------cchhheecc--cCcee
Confidence 1247899999999999993 567777855 55544
No 176
>PF00930 DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-terminal region; InterPro: IPR002469 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This domain defines serine peptidases belonging to MEROPS peptidase family S9 (clan SC), subfamily S9B (dipeptidyl-peptidase IV). The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. This domain is an alignment of the region to the N-terminal side of the active site, which is found in IPR001375 from INTERPRO. CD26 (3.4.14.5 from EC) is also called adenosine deaminase-binding protein (ADA-binding protein) or dipeptidylpeptidase IV (DPP IV ectoenzyme). The exopeptidase cleaves off N-terminal X-Pro or X-Ala dipeptides from polypeptides (dipeptidyl peptidase IV activity). CD26 serves as the costimulatory molecule in T cell activation and is an associated marker of autoimmune diseases, adenosine deaminase-deficiency and HIV pathogenesis. Dipeptidyl peptidase IV (DPP IV) is responsible for the removal of N-terminal dipeptides sequentially from polypeptides having unsubstituted N termini, provided that the penultimate residue is proline. The enzyme catalyses the reaction: Dipeptidyl-Polypeptide + H(2)O = Dipeptide + Polypeptide It is a type II membrane protein that forms a homodimer. CD molecules are leucocyte antigens on cell surfaces. CD antigens nomenclature is updated at Protein Reviews On The Web (http://prow.nci.nih.gov/). ; GO: 0006508 proteolysis, 0016020 membrane; PDB: 2RIP_A 3Q8W_B 2AJL_I 1TKR_B 1TK3_B 3C45_A 2G5P_A 3G0C_D 1R9M_C 1RWQ_A ....
Probab=80.92 E-value=6.7 Score=35.84 Aligned_cols=17 Identities=29% Similarity=0.217 Sum_probs=13.9
Q ss_pred CeeEEECCCCCEEEEEe
Q 027522 137 PQMIQLSLDGKRLYVTN 153 (222)
Q Consensus 137 Pr~~~lspdGk~LyvaN 153 (222)
.+...+||||++|....
T Consensus 45 ~~~~~~sP~g~~~~~v~ 61 (353)
T PF00930_consen 45 LQDAKWSPDGKYIAFVR 61 (353)
T ss_dssp BSEEEE-SSSTEEEEEE
T ss_pred cccceeecCCCeeEEEe
Confidence 67899999999988775
No 177
>KOG1009 consensus Chromatin assembly complex 1 subunit B/CAC2 (contains WD40 repeats) [Chromatin structure and dynamics; Replication, recombination and repair]
Probab=80.75 E-value=8.2 Score=37.49 Aligned_cols=34 Identities=26% Similarity=0.368 Sum_probs=27.7
Q ss_pred CceeEEEEcCCCCEEEEEeCCCCcEEEEEecCCCCCeE
Q 027522 58 GLITDFLISLDDRFLYFSNWLHGDIRQYNIEDPKNPVL 95 (222)
Q Consensus 58 ~~~adI~iSpDgrfLYvSnRgh~sI~vf~i~d~~~~~L 95 (222)
.-+.|+.=|||++|| ++.++.+++.+||+.. +.+
T Consensus 124 ~diydL~Ws~d~~~l-~s~s~dns~~l~Dv~~---G~l 157 (434)
T KOG1009|consen 124 DDIYDLAWSPDSNFL-VSGSVDNSVRLWDVHA---GQL 157 (434)
T ss_pred cchhhhhccCCCcee-eeeeccceEEEEEecc---cee
Confidence 346899999999999 6667999999999943 555
No 178
>PF02333 Phytase: Phytase; InterPro: IPR003431 Phytase (3.1.3.8 from EC) (phytate 3-phosphatase) is a secreted enzyme which hydrolyses phytate to release inorganic phosphate. This family appears to represent a novel enzyme that shows phytase activity () and has been shown to consist of a single structural unit with a six-bladed propeller folding architecture ().; GO: 0016158 3-phytase activity; PDB: 3AMS_A 3AMR_A 1QLG_A 2POO_A 1H6L_A 1CVM_A 1POO_A.
Probab=80.43 E-value=33 Score=32.95 Aligned_cols=86 Identities=15% Similarity=0.240 Sum_probs=50.1
Q ss_pred EEEcCCCCeEEEEeccCceEEEEEeCCCCCeeEEEEEEecCcccccccCCCCCCceeEEEE--cCCC-CEEEEEeCCCCc
Q 027522 5 FLHDPSKDIGFVGCALASTMVRFSKTQDGSWNHEVAISVKSLKVQNWILPEMPGLITDFLI--SLDD-RFLYFSNWLHGD 81 (222)
Q Consensus 5 ~afhP~g~~aYvv~ELsstV~~~~~d~~g~~~~~q~is~~p~~~~g~~~~~~~~~~adI~i--SpDg-rfLYvSnRgh~s 81 (222)
++.+....++|+..| +--||+|.-++++......+..+....+. +-.-.|.| ..+| .||.||+-|.++
T Consensus 213 CVVDDe~g~LYvgEE-~~GIW~y~Aep~~~~~~~~v~~~~g~~l~--------aDvEGlaly~~~~g~gYLivSsQG~~s 283 (381)
T PF02333_consen 213 CVVDDETGRLYVGEE-DVGIWRYDAEPEGGNDRTLVASADGDGLV--------ADVEGLALYYGSDGKGYLIVSSQGDNS 283 (381)
T ss_dssp EEEETTTTEEEEEET-TTEEEEEESSCCC-S--EEEEEBSSSSB---------S-EEEEEEEE-CCC-EEEEEEEGGGTE
T ss_pred EEEecccCCEEEecC-ccEEEEEecCCCCCCcceeeecccccccc--------cCccceEEEecCCCCeEEEEEcCCCCe
Confidence 345666778999777 67899987765544333333333222221 11233444 4555 599999999999
Q ss_pred EEEEEecCCCCCeEEEEEEe
Q 027522 82 IRQYNIEDPKNPVLTGQIWV 101 (222)
Q Consensus 82 I~vf~i~d~~~~~L~~~v~~ 101 (222)
.++|+...+ -..++...+
T Consensus 284 f~Vy~r~~~--~~~~g~f~i 301 (381)
T PF02333_consen 284 FAVYDREGP--NAYVGSFRI 301 (381)
T ss_dssp EEEEESSTT----EEEEEEE
T ss_pred EEEEecCCC--CcccceEEe
Confidence 999998543 345555554
No 179
>KOG0640 consensus mRNA cleavage stimulating factor complex; subunit 1 [RNA processing and modification]
Probab=80.31 E-value=9.1 Score=36.54 Aligned_cols=105 Identities=12% Similarity=0.127 Sum_probs=62.2
Q ss_pred EEcCCCCeEEEEeccCceEEEEEeC------------CCCCeeEEEEEEecCcccccccCCCCCCceeEEEEcCCCCEEE
Q 027522 6 LHDPSKDIGFVGCALASTMVRFSKT------------QDGSWNHEVAISVKSLKVQNWILPEMPGLITDFLISLDDRFLY 73 (222)
Q Consensus 6 afhP~g~~aYvv~ELsstV~~~~~d------------~~g~~~~~q~is~~p~~~~g~~~~~~~~~~adI~iSpDgrfLY 73 (222)
+|+|||.++-...+ +.+|-.+.-. .++.-+...+|.++=..++ ...++.++|-..-|-
T Consensus 119 afs~DG~lvATGsa-D~SIKildvermlaks~~~em~~~~~qa~hPvIRTlYDH~d---------evn~l~FHPre~ILi 188 (430)
T KOG0640|consen 119 AFSPDGSLVATGSA-DASIKILDVERMLAKSKPKEMISGDTQARHPVIRTLYDHVD---------EVNDLDFHPRETILI 188 (430)
T ss_pred eeCCCCcEEEccCC-cceEEEeehhhhhhhcchhhhccCCcccCCceEeehhhccC---------cccceeecchhheEE
Confidence 68888887766665 4455554321 0122222245555433332 247888999988885
Q ss_pred EEeCCCCcEEEEEecCCCCCeEEEEEEecceeecCCceeeeeCCCCCCCCCCccccCcccCCCCeeEEECCCCCEEEEEe
Q 027522 74 FSNWLHGDIRQYNIEDPKNPVLTGQIWVGGLFRKGSPVVAVTDDGQPYQSDVPEVQGHRLRGGPQMIQLSLDGKRLYVTN 153 (222)
Q Consensus 74 vSnRgh~sI~vf~i~d~~~~~L~~~v~~gG~~~~~~~~~~~~~~~~~~~p~~~~v~G~~~~ggPr~~~lspdGk~LyvaN 153 (222)
|.-.++.|-.||++.+...+- - ++.++ -.. -|.+.+.|.|.+|+|+.
T Consensus 189 -S~srD~tvKlFDfsK~saKrA-~--------------K~~qd-------------~~~----vrsiSfHPsGefllvgT 235 (430)
T KOG0640|consen 189 -SGSRDNTVKLFDFSKTSAKRA-F--------------KVFQD-------------TEP----VRSISFHPSGEFLLVGT 235 (430)
T ss_pred -eccCCCeEEEEecccHHHHHH-H--------------HHhhc-------------cce----eeeEeecCCCceEEEec
Confidence 444588999999976532211 0 11110 011 58899999999999886
No 180
>PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats.
Probab=80.02 E-value=12 Score=37.64 Aligned_cols=66 Identities=15% Similarity=0.266 Sum_probs=49.3
Q ss_pred EEEcCCCCeEEEEeccCceEEEEEeCCCCCeeEEEEEEecCcccccccCCCCCCceeEEEEcCCCCEEEEEeCCCCcEEE
Q 027522 5 FLHDPSKDIGFVGCALASTMVRFSKTQDGSWNHEVAISVKSLKVQNWILPEMPGLITDFLISLDDRFLYFSNWLHGDIRQ 84 (222)
Q Consensus 5 ~afhP~g~~aYvv~ELsstV~~~~~d~~g~~~~~q~is~~p~~~~g~~~~~~~~~~adI~iSpDgrfLYvSnRgh~sI~v 84 (222)
.+++|+...+-++|| +++|..|.-.. + .+...... -.++.|.-+|||-.+-|+|. .|.|..
T Consensus 265 ca~sp~E~kLvlGC~-DgSiiLyD~~~-~-~t~~~ka~---------------~~P~~iaWHp~gai~~V~s~-qGelQ~ 325 (545)
T PF11768_consen 265 CARSPSEDKLVLGCE-DGSIILYDTTR-G-VTLLAKAE---------------FIPTLIAWHPDGAIFVVGSE-QGELQC 325 (545)
T ss_pred EecCcccceEEEEec-CCeEEEEEcCC-C-eeeeeeec---------------ccceEEEEcCCCcEEEEEcC-CceEEE
Confidence 578999999999999 89999987532 1 11111111 22489999999999999984 689999
Q ss_pred EEecC
Q 027522 85 YNIED 89 (222)
Q Consensus 85 f~i~d 89 (222)
||+.-
T Consensus 326 FD~AL 330 (545)
T PF11768_consen 326 FDMAL 330 (545)
T ss_pred EEeec
Confidence 99954
No 181
>COG2133 Glucose/sorbosone dehydrogenases [Carbohydrate transport and metabolism]
Probab=79.30 E-value=26 Score=33.86 Aligned_cols=105 Identities=17% Similarity=0.130 Sum_probs=52.3
Q ss_pred EEEEEeC-CCCCeeEEEEE-EecCcccccccCCCCCCceeEEEEcCCCCEEEEEeCCCCcEEEEEecCC--CCCeEEEEE
Q 027522 24 MVRFSKT-QDGSWNHEVAI-SVKSLKVQNWILPEMPGLITDFLISLDDRFLYFSNWLHGDIRQYNIEDP--KNPVLTGQI 99 (222)
Q Consensus 24 V~~~~~d-~~g~~~~~q~i-s~~p~~~~g~~~~~~~~~~adI~iSpDgrfLYvSnRgh~sI~vf~i~d~--~~~~L~~~v 99 (222)
+.+..++ .+.+++..++| .-.|..-. -....|+++||| .||||-=-.+.-+ ..+++ ..+|.+ ++
T Consensus 149 ~~~~~~~~g~~~l~~~~~i~~~lP~~~~--------H~g~~l~f~pDG-~Lyvs~G~~~~~~--~aq~~~~~~Gk~~-r~ 216 (399)
T COG2133 149 VAIGRLPGGDTKLSEPKVIFRGIPKGGH--------HFGGRLVFGPDG-KLYVTTGSNGDPA--LAQDNVSLAGKVL-RI 216 (399)
T ss_pred EEEEEcCCCccccccccEEeecCCCCCC--------cCcccEEECCCC-cEEEEeCCCCCcc--cccCcccccccee-ee
Confidence 4444443 33466665555 32332211 235899999999 9999873222222 11111 122221 23
Q ss_pred EecceeecCCceeeeeCCCCCCCCCCccccCcccCCCCeeEEECCCCCEEEEEe
Q 027522 100 WVGGLFRKGSPVVAVTDDGQPYQSDVPEVQGHRLRGGPQMIQLSLDGKRLYVTN 153 (222)
Q Consensus 100 ~~gG~~~~~~~~~~~~~~~~~~~p~~~~v~G~~~~ggPr~~~lspdGk~LyvaN 153 (222)
...|+++-+.+ ..-..-..-|.+ .|+-|++.|-...||++.
T Consensus 217 ~~a~~~~~d~p----------~~~~~i~s~G~R---N~qGl~w~P~tg~Lw~~e 257 (399)
T COG2133 217 DRAGIIPADNP----------FPNSEIWSYGHR---NPQGLAWHPVTGALWTTE 257 (399)
T ss_pred ccCcccccCCC----------CCCcceEEeccC---CccceeecCCCCcEEEEe
Confidence 33333332211 111111223444 588899999977788886
No 182
>KOG1520 consensus Predicted alkaloid synthase/Surface mucin Hemomucin [General function prediction only]
Probab=78.79 E-value=7 Score=37.51 Aligned_cols=65 Identities=20% Similarity=0.301 Sum_probs=47.5
Q ss_pred CceeEEEEcCCCCEEEEEeCCCCcEEEEEecCCCCCeEEEEEEecceeecCCceeeeeCCCCCCCCCCccccCcccCCCC
Q 027522 58 GLITDFLISLDDRFLYFSNWLHGDIRQYNIEDPKNPVLTGQIWVGGLFRKGSPVVAVTDDGQPYQSDVPEVQGHRLRGGP 137 (222)
Q Consensus 58 ~~~adI~iSpDgrfLYvSnRgh~sI~vf~i~d~~~~~L~~~v~~gG~~~~~~~~~~~~~~~~~~~p~~~~v~G~~~~ggP 137 (222)
..+..|.+|||+.||-+|--.-..|..|=|..+..++- ++.+ +.+.|-|
T Consensus 219 ~F~NGlaLS~d~sfvl~~Et~~~ri~rywi~g~k~gt~--EvFa-----------------------------~~LPG~P 267 (376)
T KOG1520|consen 219 YFPNGLALSPDGSFVLVAETTTARIKRYWIKGPKAGTS--EVFA-----------------------------EGLPGYP 267 (376)
T ss_pred cccccccCCCCCCEEEEEeeccceeeeeEecCCccCch--hhHh-----------------------------hcCCCCC
Confidence 45688999999999999988888888998865433321 2232 1244669
Q ss_pred eeEEECCCCCEEEEEe
Q 027522 138 QMIQLSLDGKRLYVTN 153 (222)
Q Consensus 138 r~~~lspdGk~LyvaN 153 (222)
-|+..+.+|.+...-+
T Consensus 268 DNIR~~~~G~fWVal~ 283 (376)
T KOG1520|consen 268 DNIRRDSTGHFWVALH 283 (376)
T ss_pred cceeECCCCCEEEEEe
Confidence 9999999998776653
No 183
>PF00930 DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-terminal region; InterPro: IPR002469 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This domain defines serine peptidases belonging to MEROPS peptidase family S9 (clan SC), subfamily S9B (dipeptidyl-peptidase IV). The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. This domain is an alignment of the region to the N-terminal side of the active site, which is found in IPR001375 from INTERPRO. CD26 (3.4.14.5 from EC) is also called adenosine deaminase-binding protein (ADA-binding protein) or dipeptidylpeptidase IV (DPP IV ectoenzyme). The exopeptidase cleaves off N-terminal X-Pro or X-Ala dipeptides from polypeptides (dipeptidyl peptidase IV activity). CD26 serves as the costimulatory molecule in T cell activation and is an associated marker of autoimmune diseases, adenosine deaminase-deficiency and HIV pathogenesis. Dipeptidyl peptidase IV (DPP IV) is responsible for the removal of N-terminal dipeptides sequentially from polypeptides having unsubstituted N termini, provided that the penultimate residue is proline. The enzyme catalyses the reaction: Dipeptidyl-Polypeptide + H(2)O = Dipeptide + Polypeptide It is a type II membrane protein that forms a homodimer. CD molecules are leucocyte antigens on cell surfaces. CD antigens nomenclature is updated at Protein Reviews On The Web (http://prow.nci.nih.gov/). ; GO: 0006508 proteolysis, 0016020 membrane; PDB: 2RIP_A 3Q8W_B 2AJL_I 1TKR_B 1TK3_B 3C45_A 2G5P_A 3G0C_D 1R9M_C 1RWQ_A ....
Probab=78.50 E-value=53 Score=29.94 Aligned_cols=100 Identities=15% Similarity=0.054 Sum_probs=54.2
Q ss_pred cCCCCeEEEEeccCceEEEEEeCCCCCeeEEEEEEecCcccccccCCCCCCceeEEEEcCCCCEEEEEeCCC--CcEEEE
Q 027522 8 DPSKDIGFVGCALASTMVRFSKTQDGSWNHEVAISVKSLKVQNWILPEMPGLITDFLISLDDRFLYFSNWLH--GDIRQY 85 (222)
Q Consensus 8 hP~g~~aYvv~ELsstV~~~~~d~~g~~~~~q~is~~p~~~~g~~~~~~~~~~adI~iSpDgrfLYvSnRgh--~sI~vf 85 (222)
.+++...+.+.|-++---++.++.+|.. .+ .+.+.++ .-..-+.++++++.||...-.+ ..--+|
T Consensus 244 ~~~~~~~l~~s~~~G~~hly~~~~~~~~--~~--~lT~G~~---------~V~~i~~~d~~~~~iyf~a~~~~p~~r~lY 310 (353)
T PF00930_consen 244 GPDGNEFLWISERDGYRHLYLYDLDGGK--PR--QLTSGDW---------EVTSILGWDEDNNRIYFTANGDNPGERHLY 310 (353)
T ss_dssp TTTSSEEEEEEETTSSEEEEEEETTSSE--EE--ESS-SSS----------EEEEEEEECTSSEEEEEESSGGTTSBEEE
T ss_pred cCCCCEEEEEEEcCCCcEEEEEcccccc--ee--ccccCce---------eecccceEcCCCCEEEEEecCCCCCceEEE
Confidence 3777777777776554444444433332 11 2222221 1124578899999999655543 355677
Q ss_pred EecCCCCCeEEEEEEecceeecCCceeeeeCCCCCCCCCCccccCcccCCCCe-eEEECCCCCEEEEEe
Q 027522 86 NIEDPKNPVLTGQIWVGGLFRKGSPVVAVTDDGQPYQSDVPEVQGHRLRGGPQ-MIQLSLDGKRLYVTN 153 (222)
Q Consensus 86 ~i~d~~~~~L~~~v~~gG~~~~~~~~~~~~~~~~~~~p~~~~v~G~~~~ggPr-~~~lspdGk~LyvaN 153 (222)
.|+-...+.+ ..+.. +. +.- ..++||||+++..+.
T Consensus 311 ~v~~~~~~~~-~~LT~----------------------------~~----~~~~~~~~Spdg~y~v~~~ 346 (353)
T PF00930_consen 311 RVSLDSGGEP-KCLTC----------------------------ED----GDHYSASFSPDGKYYVDTY 346 (353)
T ss_dssp EEETTETTEE-EESST----------------------------TS----STTEEEEE-TTSSEEEEEE
T ss_pred EEEeCCCCCe-EeccC----------------------------CC----CCceEEEECCCCCEEEEEE
Confidence 7743212333 11111 11 133 799999999999887
No 184
>KOG0321 consensus WD40 repeat-containing protein L2DTL [Function unknown]
Probab=78.40 E-value=18 Score=37.23 Aligned_cols=28 Identities=18% Similarity=0.398 Sum_probs=23.7
Q ss_pred eEEEEcCCCCEEEEEeCCCCcEEEEEecC
Q 027522 61 TDFLISLDDRFLYFSNWLHGDIRQYNIED 89 (222)
Q Consensus 61 adI~iSpDgrfLYvSnRgh~sI~vf~i~d 89 (222)
+-+.+..-|.+||+||- +++|-.|++..
T Consensus 275 ~nL~lDssGt~L~AsCt-D~sIy~ynm~s 302 (720)
T KOG0321|consen 275 VNLILDSSGTYLFASCT-DNSIYFYNMRS 302 (720)
T ss_pred EEEEecCCCCeEEEEec-CCcEEEEeccc
Confidence 56777778899999997 99999999843
No 185
>KOG2919 consensus Guanine nucleotide-binding protein [General function prediction only]
Probab=78.24 E-value=30 Score=33.23 Aligned_cols=107 Identities=21% Similarity=0.314 Sum_probs=64.7
Q ss_pred EeEEEcCCCCeEEEEeccCceEEEEEeCCCCCeeEEEEEEecCc-ccccccCCCCCCceeEEEEcCCCCEEEEEeCCCCc
Q 027522 3 IRFLHDPSKDIGFVGCALASTMVRFSKTQDGSWNHEVAISVKSL-KVQNWILPEMPGLITDFLISLDDRFLYFSNWLHGD 81 (222)
Q Consensus 3 vr~afhP~g~~aYvv~ELsstV~~~~~d~~g~~~~~q~is~~p~-~~~g~~~~~~~~~~adI~iSpDgrfLYvSnRgh~s 81 (222)
.-+.|+|||..+|.. -.++|-+|.-..-|... .+.++..+ ++ |. . +..+-+.+||-.--+|+..-=...
T Consensus 162 hsL~Fs~DGeqlfaG--ykrcirvFdt~RpGr~c--~vy~t~~~~k~-gq--~---giisc~a~sP~~~~~~a~gsY~q~ 231 (406)
T KOG2919|consen 162 HSLQFSPDGEQLFAG--YKRCIRVFDTSRPGRDC--PVYTTVTKGKF-GQ--K---GIISCFAFSPMDSKTLAVGSYGQR 231 (406)
T ss_pred eeEEecCCCCeEeec--ccceEEEeeccCCCCCC--cchhhhhcccc-cc--c---ceeeeeeccCCCCcceeeecccce
Confidence 357899999998877 67888888653334432 22233322 22 11 1 456889999987766665433345
Q ss_pred EEEEEecCCCCCeEEEEEEecceeecCCceeeeeCCCCCCCCCCccccCcccCCCCeeEEECCCCCEEEEEe
Q 027522 82 IRQYNIEDPKNPVLTGQIWVGGLFRKGSPVVAVTDDGQPYQSDVPEVQGHRLRGGPQMIQLSLDGKRLYVTN 153 (222)
Q Consensus 82 I~vf~i~d~~~~~L~~~v~~gG~~~~~~~~~~~~~~~~~~~p~~~~v~G~~~~ggPr~~~lspdGk~LyvaN 153 (222)
+-+|.-.+ ..|-. -.|| + .||--+++.-+||.+||+.-
T Consensus 232 ~giy~~~~-~~pl~----llgg---------------------------h--~gGvThL~~~edGn~lfsGa 269 (406)
T KOG2919|consen 232 VGIYNDDG-RRPLQ----LLGG---------------------------H--GGGVTHLQWCEDGNKLFSGA 269 (406)
T ss_pred eeeEecCC-CCcee----eecc---------------------------c--CCCeeeEEeccCcCeecccc
Confidence 56665422 22311 1222 2 24566899999999999874
No 186
>KOG0647 consensus mRNA export protein (contains WD40 repeats) [RNA processing and modification]
Probab=77.65 E-value=5.7 Score=37.44 Aligned_cols=63 Identities=16% Similarity=0.192 Sum_probs=43.9
Q ss_pred ceeEEEEcCCCCEEEEEeCCCCcEEEEEecCCCCCeEEEEEEecceeecCCceeeeeCCCCCCCCCCccccCcccCCCCe
Q 027522 59 LITDFLISLDDRFLYFSNWLHGDIRQYNIEDPKNPVLTGQIWVGGLFRKGSPVVAVTDDGQPYQSDVPEVQGHRLRGGPQ 138 (222)
Q Consensus 59 ~~adI~iSpDgrfLYvSnRgh~sI~vf~i~d~~~~~L~~~v~~gG~~~~~~~~~~~~~~~~~~~p~~~~v~G~~~~ggPr 138 (222)
.+++|.+||...+|.++.-.++.|++|+|++. +.++++... .+.|-+=
T Consensus 29 sIS~l~FSP~~~~~~~A~SWD~tVR~wevq~~--g~~~~ka~~------------------------------~~~~PvL 76 (347)
T KOG0647|consen 29 SISALAFSPQADNLLAAGSWDGTVRIWEVQNS--GQLVPKAQQ------------------------------SHDGPVL 76 (347)
T ss_pred chheeEeccccCceEEecccCCceEEEEEecC--Ccccchhhh------------------------------ccCCCeE
Confidence 46999999977777755555899999999763 555443221 0111156
Q ss_pred eEEECCCCCEEEEEe
Q 027522 139 MIQLSLDGKRLYVTN 153 (222)
Q Consensus 139 ~~~lspdGk~LyvaN 153 (222)
..+.|.||.-+|.+.
T Consensus 77 ~v~WsddgskVf~g~ 91 (347)
T KOG0647|consen 77 DVCWSDDGSKVFSGG 91 (347)
T ss_pred EEEEccCCceEEeec
Confidence 789999999888876
No 187
>PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A ....
Probab=77.40 E-value=39 Score=27.79 Aligned_cols=27 Identities=30% Similarity=0.561 Sum_probs=20.5
Q ss_pred ECCCCCEEEEEeCCCCccccccccccccCCcEEEEEEeeCCCCCe
Q 027522 142 LSLDGKRLYVTNSLFSAWDCQFYPELKEKGSHMLQIDVNSEKGGM 186 (222)
Q Consensus 142 lspdGk~LyvaNsl~~~wd~Q~yp~~~s~~~~i~~~dvd~~~G~l 186 (222)
...+|..||+++ +...|+.+ |..||+.
T Consensus 208 ~~~~~~~l~~~~----------------~~~~l~~~--d~~tG~~ 234 (238)
T PF13360_consen 208 PSVDGGTLYVTS----------------SDGRLYAL--DLKTGKV 234 (238)
T ss_dssp EECCCTEEEEEE----------------TTTEEEEE--ETTTTEE
T ss_pred ceeeCCEEEEEe----------------CCCEEEEE--ECCCCCE
Confidence 567899999998 25677778 4488865
No 188
>KOG1034 consensus Transcriptional repressor EED/ESC/FIE, required for transcriptional silencing, WD repeat superfamily [Transcription]
Probab=77.24 E-value=4.2 Score=38.75 Aligned_cols=72 Identities=14% Similarity=0.189 Sum_probs=48.8
Q ss_pred EeEEEcCCCCeEEEEeccCceEEEEEeCCCCCeeEEEEEEecCcccccccCCCCCCceeEEEEcCCCCEEEEEeCCCCcE
Q 027522 3 IRFLHDPSKDIGFVGCALASTMVRFSKTQDGSWNHEVAISVKSLKVQNWILPEMPGLITDFLISLDDRFLYFSNWLHGDI 82 (222)
Q Consensus 3 vr~afhP~g~~aYvv~ELsstV~~~~~d~~g~~~~~q~is~~p~~~~g~~~~~~~~~~adI~iSpDgrfLYvSnRgh~sI 82 (222)
|||+|+|-++.+-++|+. .+|.+|..+....- .+ +++.-...+ +...+..+|-||++|-..| ..+.|
T Consensus 311 irf~~d~~~~~la~gnq~-g~v~vwdL~~~ep~--~~--ttl~~s~~~-------~tVRQ~sfS~dgs~lv~vc-dd~~V 377 (385)
T KOG1034|consen 311 IRFAFDPWQKMLALGNQS-GKVYVWDLDNNEPP--KC--TTLTHSKSG-------STVRQTSFSRDGSILVLVC-DDGTV 377 (385)
T ss_pred EEEeecHHHHHHhhccCC-CcEEEEECCCCCCc--cC--ceEEecccc-------ceeeeeeecccCcEEEEEe-CCCcE
Confidence 899999999999999995 67888877532111 11 111111122 4567899999999998777 35667
Q ss_pred EEEEe
Q 027522 83 RQYNI 87 (222)
Q Consensus 83 ~vf~i 87 (222)
+.|+.
T Consensus 378 wrwdr 382 (385)
T KOG1034|consen 378 WRWDR 382 (385)
T ss_pred EEEEe
Confidence 77754
No 189
>KOG2111 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=77.11 E-value=32 Score=32.67 Aligned_cols=83 Identities=12% Similarity=0.081 Sum_probs=53.3
Q ss_pred EeEEEcCCCCeE--EEEeccCceEEEEEeCCCCCeeEE--------EEEEecC-----cccccccCCCCCCceeEEEEcC
Q 027522 3 IRFLHDPSKDIG--FVGCALASTMVRFSKTQDGSWNHE--------VAISVKS-----LKVQNWILPEMPGLITDFLISL 67 (222)
Q Consensus 3 vr~afhP~g~~a--Yvv~ELsstV~~~~~d~~g~~~~~--------q~is~~p-----~~~~g~~~~~~~~~~adI~iSp 67 (222)
|++++=..-+.. .+|++-.|.|..+..+.+|++-+. ....+-. +--.|. .++...-|.+||
T Consensus 161 vQi~dL~~~~~~~p~~I~AH~s~Iacv~Ln~~Gt~vATaStkGTLIRIFdt~~g~~l~E~RRG~----d~A~iy~iaFSp 236 (346)
T KOG2111|consen 161 VQIVDLASTKPNAPSIINAHDSDIACVALNLQGTLVATASTKGTLIRIFDTEDGTLLQELRRGV----DRADIYCIAFSP 236 (346)
T ss_pred EEEEEhhhcCcCCceEEEcccCceeEEEEcCCccEEEEeccCcEEEEEEEcCCCcEeeeeecCC----chheEEEEEeCC
Confidence 455554444442 677888888887777656654333 1111111 000122 346788999999
Q ss_pred CCCEEEEEeCCCCcEEEEEecCC
Q 027522 68 DDRFLYFSNWLHGDIRQYNIEDP 90 (222)
Q Consensus 68 DgrfLYvSnRgh~sI~vf~i~d~ 90 (222)
|..||-||. .+|+|-+|.+.++
T Consensus 237 ~~s~LavsS-dKgTlHiF~l~~~ 258 (346)
T KOG2111|consen 237 NSSWLAVSS-DKGTLHIFSLRDT 258 (346)
T ss_pred CccEEEEEc-CCCeEEEEEeecC
Confidence 999999887 6899999999763
No 190
>KOG0295 consensus WD40 repeat-containing protein [Function unknown]
Probab=76.93 E-value=75 Score=30.82 Aligned_cols=145 Identities=13% Similarity=0.111 Sum_probs=77.8
Q ss_pred CeEEEEeccCceEEEEEeCCC-------CCeeEEEEEEecCcccccccCCCCCCceeEEEEcC-CCCEEEEEeCCCCcEE
Q 027522 12 DIGFVGCALASTMVRFSKTQD-------GSWNHEVAISVKSLKVQNWILPEMPGLITDFLISL-DDRFLYFSNWLHGDIR 83 (222)
Q Consensus 12 ~~aYvv~ELsstV~~~~~d~~-------g~~~~~q~is~~p~~~~g~~~~~~~~~~adI~iSp-DgrfLYvSnRgh~sI~ 83 (222)
-.++..|-.+.+|.++-.... +.-...+.++..|+.+-..+.. -.=|- .+.+|..-. .+.+|.
T Consensus 247 Gti~As~s~dqtl~vW~~~t~~~k~~lR~hEh~vEci~wap~~~~~~i~~--------at~~~~~~~~l~s~S-rDktIk 317 (406)
T KOG0295|consen 247 GTIIASCSNDQTLRVWVVATKQCKAELREHEHPVECIAWAPESSYPSISE--------ATGSTNGGQVLGSGS-RDKTIK 317 (406)
T ss_pred eeEEEecCCCceEEEEEeccchhhhhhhccccceEEEEecccccCcchhh--------ccCCCCCccEEEeec-ccceEE
Confidence 345666777888777755311 2223345555555433211111 11111 445564444 578999
Q ss_pred EEEecCCCCCeEEEEEEecceeecCCceeeeeCCCCCCCCCCccccCcccCCCCeeEEECCCCCEEEEEeCCCCcccccc
Q 027522 84 QYNIEDPKNPVLTGQIWVGGLFRKGSPVVAVTDDGQPYQSDVPEVQGHRLRGGPQMIQLSLDGKRLYVTNSLFSAWDCQF 163 (222)
Q Consensus 84 vf~i~d~~~~~L~~~v~~gG~~~~~~~~~~~~~~~~~~~p~~~~v~G~~~~ggPr~~~lspdGk~LyvaNsl~~~wd~Q~ 163 (222)
.|+|.- ++.+ ..++|. +.+ -|.++++|-||||+-+-
T Consensus 318 ~wdv~t---g~cL--~tL~gh-------------------------dnw----Vr~~af~p~Gkyi~Sca---------- 353 (406)
T KOG0295|consen 318 IWDVST---GMCL--FTLVGH-------------------------DNW----VRGVAFSPGGKYILSCA---------- 353 (406)
T ss_pred EEeccC---CeEE--EEEecc-------------------------cce----eeeeEEcCCCeEEEEEe----------
Confidence 999954 4442 133332 344 89999999999998764
Q ss_pred ccccccCCcEEEEEEeeCCCCCee--ecccee--EecCCCCCCCcceeeeecCCCCcCcccc
Q 027522 164 YPELKEKGSHMLQIDVNSEKGGMA--INPNFF--VDFEAEPDGPALAHEMRYPGGDCTSDIW 221 (222)
Q Consensus 164 yp~~~s~~~~i~~~dvd~~~G~l~--~~~~f~--vdf~~~~~g~~~~h~~r~~~gd~~sd~~ 221 (222)
|+.++-..|.....=..+ .-+.|- +||-+-. | .|-=.+=|||+-+|
T Consensus 354 ------DDktlrvwdl~~~~cmk~~~ah~hfvt~lDfh~~~--p----~VvTGsVdqt~Kvw 403 (406)
T KOG0295|consen 354 ------DDKTLRVWDLKNLQCMKTLEAHEHFVTSLDFHKTA--P----YVVTGSVDQTVKVW 403 (406)
T ss_pred ------cCCcEEEEEeccceeeeccCCCcceeEEEecCCCC--c----eEEeccccceeeee
Confidence 355555566643322222 334443 3885522 1 34444557777766
No 191
>KOG0308 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=75.78 E-value=28 Score=35.94 Aligned_cols=106 Identities=13% Similarity=0.092 Sum_probs=67.5
Q ss_pred eEEEcCCCCeEEEEeccCceEEEEEeCCC-----CCeeEEEEEEecCcccccccCCCCCCceeEEEEcCCCCEEEEEeCC
Q 027522 4 RFLHDPSKDIGFVGCALASTMVRFSKTQD-----GSWNHEVAISVKSLKVQNWILPEMPGLITDFLISLDDRFLYFSNWL 78 (222)
Q Consensus 4 r~afhP~g~~aYvv~ELsstV~~~~~d~~-----g~~~~~q~is~~p~~~~g~~~~~~~~~~adI~iSpDgrfLYvSnRg 78 (222)
++++-...+..++-.-|+-.|++|.++.. +++...++-+++..+- ...+.++..+.| ++.||.-.
T Consensus 122 cla~~ak~~~lvaSgGLD~~IflWDin~~~~~l~~s~n~~t~~sl~sG~k---------~siYSLA~N~t~-t~ivsGgt 191 (735)
T KOG0308|consen 122 CLAYIAKNNELVASGGLDRKIFLWDINTGTATLVASFNNVTVNSLGSGPK---------DSIYSLAMNQTG-TIIVSGGT 191 (735)
T ss_pred eeeecccCceeEEecCCCccEEEEEccCcchhhhhhccccccccCCCCCc---------cceeeeecCCcc-eEEEecCc
Confidence 35554556677778889999999988521 2233334434332111 235777778888 89999988
Q ss_pred CCcEEEEEecCCCCCeEEEEEEecceeecCCceeeeeCCCCCCCCCCccccCcccCCCCeeEEECCCCCEEEEEe
Q 027522 79 HGDIRQYNIEDPKNPVLTGQIWVGGLFRKGSPVVAVTDDGQPYQSDVPEVQGHRLRGGPQMIQLSLDGKRLYVTN 153 (222)
Q Consensus 79 h~sI~vf~i~d~~~~~L~~~v~~gG~~~~~~~~~~~~~~~~~~~p~~~~v~G~~~~ggPr~~~lspdGk~LyvaN 153 (222)
.+.|++|+- -..+-+- .+.|.. .. -|.+-++.||.+++-|.
T Consensus 192 ek~lr~wDp---rt~~kim--kLrGHT-------------------------dN----Vr~ll~~dDGt~~ls~s 232 (735)
T KOG0308|consen 192 EKDLRLWDP---RTCKKIM--KLRGHT-------------------------DN----VRVLLVNDDGTRLLSAS 232 (735)
T ss_pred ccceEEecc---cccccee--eeeccc-------------------------cc----eEEEEEcCCCCeEeecC
Confidence 999999954 3332222 222321 11 67889999999998886
No 192
>COG4247 Phy 3-phytase (myo-inositol-hexaphosphate 3-phosphohydrolase) [Lipid metabolism]
Probab=75.71 E-value=72 Score=30.01 Aligned_cols=35 Identities=20% Similarity=0.421 Sum_probs=23.4
Q ss_pred eeEEEEcCCCC----EEEEEeCCCCcEEEEEecCCCCCeE
Q 027522 60 ITDFLISLDDR----FLYFSNWLHGDIRQYNIEDPKNPVL 95 (222)
Q Consensus 60 ~adI~iSpDgr----fLYvSnRgh~sI~vf~i~d~~~~~L 95 (222)
+..+.+..+-+ +++|+.| ++.|+||.+.+.++++.
T Consensus 155 ~YGl~lyrs~ktgd~yvfV~~~-qG~~~Qy~l~d~gnGkv 193 (364)
T COG4247 155 AYGLALYRSPKTGDYYVFVNRR-QGDIAQYKLIDQGNGKV 193 (364)
T ss_pred ceeeEEEecCCcCcEEEEEecC-CCceeEEEEEecCCceE
Confidence 34444444333 5556554 69999999998887765
No 193
>KOG0263 consensus Transcription initiation factor TFIID, subunit TAF5 (also component of histone acetyltransferase SAGA) [Transcription]
Probab=75.46 E-value=8.5 Score=39.67 Aligned_cols=69 Identities=16% Similarity=0.190 Sum_probs=46.6
Q ss_pred EEEcCCCCeEEEEeccCceEEEEEeCCCCCeeEEEEEEecCcccccccCCCCCCceeEEEEcCCCCEEEEEeCCCCcEEE
Q 027522 5 FLHDPSKDIGFVGCALASTMVRFSKTQDGSWNHEVAISVKSLKVQNWILPEMPGLITDFLISLDDRFLYFSNWLHGDIRQ 84 (222)
Q Consensus 5 ~afhP~g~~aYvv~ELsstV~~~~~d~~g~~~~~q~is~~p~~~~g~~~~~~~~~~adI~iSpDgrfLYvSnRgh~sI~v 84 (222)
++|+|+|++.-...| +..|-.|.. +.|++- ..+ .+. .+...-|.+|.||.-| ||.-+.++|++
T Consensus 583 l~~Sp~Gr~LaSg~e-d~~I~iWDl-~~~~~v----~~l-----~~H-----t~ti~SlsFS~dg~vL-asgg~DnsV~l 645 (707)
T KOG0263|consen 583 LAFSPCGRYLASGDE-DGLIKIWDL-ANGSLV----KQL-----KGH-----TGTIYSLSFSRDGNVL-ASGGADNSVRL 645 (707)
T ss_pred EEEcCCCceEeeccc-CCcEEEEEc-CCCcch----hhh-----hcc-----cCceeEEEEecCCCEE-EecCCCCeEEE
Confidence 578888888777766 555666655 233321 111 111 1556889999999998 66668899999
Q ss_pred EEecCC
Q 027522 85 YNIEDP 90 (222)
Q Consensus 85 f~i~d~ 90 (222)
||+...
T Consensus 646 WD~~~~ 651 (707)
T KOG0263|consen 646 WDLTKV 651 (707)
T ss_pred EEchhh
Confidence 999654
No 194
>KOG1273 consensus WD40 repeat protein [General function prediction only]
Probab=75.12 E-value=12 Score=35.68 Aligned_cols=69 Identities=20% Similarity=0.330 Sum_probs=46.0
Q ss_pred EEEcCCCCeEEEEeccCceEEEEEeCCCCCeeEEEEEEecCcccccccCCCCCCceeEEEEcCCCCEEEEEeCCCCcEEE
Q 027522 5 FLHDPSKDIGFVGCALASTMVRFSKTQDGSWNHEVAISVKSLKVQNWILPEMPGLITDFLISLDDRFLYFSNWLHGDIRQ 84 (222)
Q Consensus 5 ~afhP~g~~aYvv~ELsstV~~~~~d~~g~~~~~q~is~~p~~~~g~~~~~~~~~~adI~iSpDgrfLYvSnRgh~sI~v 84 (222)
-.|++.|++.|+++. .+.+.++..+ +++......+.. + ..+-.|.+|..||||-..+ .+..|++
T Consensus 159 ~~fdr~g~yIitGts-KGkllv~~a~---t~e~vas~rits--~---------~~IK~I~~s~~g~~liiNt-sDRvIR~ 222 (405)
T KOG1273|consen 159 GVFDRRGKYIITGTS-KGKLLVYDAE---TLECVASFRITS--V---------QAIKQIIVSRKGRFLIINT-SDRVIRT 222 (405)
T ss_pred ccccCCCCEEEEecC-cceEEEEecc---hheeeeeeeech--h---------eeeeEEEEeccCcEEEEec-CCceEEE
Confidence 369999999999987 3556666542 222221111110 1 2357899999999997655 5778999
Q ss_pred EEecC
Q 027522 85 YNIED 89 (222)
Q Consensus 85 f~i~d 89 (222)
|++.+
T Consensus 223 ye~~d 227 (405)
T KOG1273|consen 223 YEISD 227 (405)
T ss_pred Eehhh
Confidence 99975
No 195
>TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL. Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ.
Probab=75.03 E-value=64 Score=29.14 Aligned_cols=20 Identities=15% Similarity=0.463 Sum_probs=14.7
Q ss_pred CCCEEEEEeCCCCcEEEEEec
Q 027522 68 DDRFLYFSNWLHGDIRQYNIE 88 (222)
Q Consensus 68 DgrfLYvSnRgh~sI~vf~i~ 88 (222)
++..+|++++ .+.+..|+..
T Consensus 240 ~~~~vy~~~~-~g~l~a~d~~ 259 (377)
T TIGR03300 240 DGGQVYAVSY-QGRVAALDLR 259 (377)
T ss_pred ECCEEEEEEc-CCEEEEEECC
Confidence 4678999886 4567878763
No 196
>KOG0265 consensus U5 snRNP-specific protein-like factor and related proteins [RNA processing and modification]
Probab=73.78 E-value=55 Score=30.97 Aligned_cols=33 Identities=15% Similarity=0.075 Sum_probs=24.3
Q ss_pred CceeEEEEcCCCCEEEEEeCCCCcEEEEEecCCC
Q 027522 58 GLITDFLISLDDRFLYFSNWLHGDIRQYNIEDPK 91 (222)
Q Consensus 58 ~~~adI~iSpDgrfLYvSnRgh~sI~vf~i~d~~ 91 (222)
+.+.-|.++|||-+|--+. -+-.|..|.+.+..
T Consensus 48 geI~~~~F~P~gs~~aSgG-~Dr~I~LWnv~gdc 80 (338)
T KOG0265|consen 48 GEIYTIKFHPDGSCFASGG-SDRAIVLWNVYGDC 80 (338)
T ss_pred ceEEEEEECCCCCeEeecC-CcceEEEEeccccc
Confidence 5678999999998884443 34578999986543
No 197
>KOG0283 consensus WD40 repeat-containing protein [Function unknown]
Probab=73.64 E-value=38 Score=35.18 Aligned_cols=76 Identities=24% Similarity=0.385 Sum_probs=46.8
Q ss_pred EEcCCCCeEEEEeccCceEEEEEeCCCCCeeEEEEEEecCcccccccCCCCCCceeEEEEcCCCCEEEEEeCCCCcEEEE
Q 027522 6 LHDPSKDIGFVGCALASTMVRFSKTQDGSWNHEVAISVKSLKVQNWILPEMPGLITDFLISLDDRFLYFSNWLHGDIRQY 85 (222)
Q Consensus 6 afhP~g~~aYvv~ELsstV~~~~~d~~g~~~~~q~is~~p~~~~g~~~~~~~~~~adI~iSpDgrfLYvSnRgh~sI~vf 85 (222)
+|||.-..-|+-.=|+..|-.| +|+...+.-| -+..-.++++..+|||++..|-.- .|..+.|
T Consensus 416 aFnPvDDryFiSGSLD~KvRiW--------------sI~d~~Vv~W--~Dl~~lITAvcy~PdGk~avIGt~-~G~C~fY 478 (712)
T KOG0283|consen 416 AFNPVDDRYFISGSLDGKVRLW--------------SISDKKVVDW--NDLRDLITAVCYSPDGKGAVIGTF-NGYCRFY 478 (712)
T ss_pred EecccCCCcEeecccccceEEe--------------ecCcCeeEee--hhhhhhheeEEeccCCceEEEEEe-ccEEEEE
Confidence 4445444444444444444444 4444444333 122367899999999999988774 6789999
Q ss_pred EecCCCCCeEEEEEEe
Q 027522 86 NIEDPKNPVLTGQIWV 101 (222)
Q Consensus 86 ~i~d~~~~~L~~~v~~ 101 (222)
++.+ .+|+.+..+
T Consensus 479 ~t~~---lk~~~~~~I 491 (712)
T KOG0283|consen 479 DTEG---LKLVSDFHI 491 (712)
T ss_pred EccC---CeEEEeeeE
Confidence 8854 666654443
No 198
>TIGR03118 PEPCTERM_chp_1 conserved hypothetical protein TIGR03118. This model describes and uncharacterized conserved hypothetical protein. Members are found with the C-terminal putative exosortase interaction domain, PEP-CTERM, in Nitrosospira multiformis, Rhodoferax ferrireducens, Solibacter usitatus Ellin6076, and Acidobacteria bacterium Ellin345. It is found without the PEP-CTERM domain in several other species, including Burkholderia ambifaria, Gloeobacter violaceus PCC 7421, and three copies in the Acanthamoeba polyphaga mimivirus.
Probab=73.48 E-value=84 Score=29.86 Aligned_cols=82 Identities=16% Similarity=0.193 Sum_probs=46.4
Q ss_pred CCCCeEEEEeccCceEEEEEeCCCCCeeEEEEEEecCcccccccCCCCCCceeEEEEcCCCCEEEEEe------------
Q 027522 9 PSKDIGFVGCALASTMVRFSKTQDGSWNHEVAISVKSLKVQNWILPEMPGLITDFLISLDDRFLYFSN------------ 76 (222)
Q Consensus 9 P~g~~aYvv~ELsstV~~~~~d~~g~~~~~q~is~~p~~~~g~~~~~~~~~~adI~iSpDgrfLYvSn------------ 76 (222)
+.+.++|..+=-+.+|-+|. ++|+.. ++ +..|.. |.+|+.-|-.-|=--|-.|||+=
T Consensus 149 ~~~~~LYaadF~~g~IDVFd----~~f~~~---~~-~g~F~D---P~iPagyAPFnIqnig~~lyVtYA~qd~~~~d~v~ 217 (336)
T TIGR03118 149 GGGDYLYAANFRQGRIDVFK----GSFRPP---PL-PGSFID---PALPAGYAPFNVQNLGGTLYVTYAQQDADRNDEVA 217 (336)
T ss_pred CCCceEEEeccCCCceEEec----Cccccc---cC-CCCccC---CCCCCCCCCcceEEECCeEEEEEEecCCccccccc
Confidence 34667777777677777773 334322 11 112221 22223333333444567788763
Q ss_pred -CCCCcEEEEEecCCCCCeEEEEEEeccee
Q 027522 77 -WLHGDIRQYNIEDPKNPVLTGQIWVGGLF 105 (222)
Q Consensus 77 -Rgh~sI~vf~i~d~~~~~L~~~v~~gG~~ 105 (222)
.|++-|.+|+. .++|++++..+|..
T Consensus 218 G~G~G~VdvFd~----~G~l~~r~as~g~L 243 (336)
T TIGR03118 218 GAGLGYVNVFTL----NGQLLRRVASSGRL 243 (336)
T ss_pred CCCcceEEEEcC----CCcEEEEeccCCcc
Confidence 57788899966 27788888887653
No 199
>PF03088 Str_synth: Strictosidine synthase; InterPro: IPR018119 This entry represents a conserved region found in strictosidine synthase (4.3.3.2 from EC), a key enzyme in alkaloid biosynthesis. It catalyses the Pictet-Spengler stereospecific condensation of tryptamine with secologanin to form strictosidine []. The structure of the native enzyme from the Indian medicinal plant Rauvolfia serpentina (Serpentwood) (Devilpepper) represents the first example of a six-bladed four-stranded beta-propeller fold from the plant kingdom [].; GO: 0016844 strictosidine synthase activity, 0009058 biosynthetic process; PDB: 2FPB_A 2V91_B 2FP8_A 3V1S_B 2FPC_A 2VAQ_A 2FP9_B.
Probab=73.44 E-value=7 Score=29.96 Aligned_cols=32 Identities=16% Similarity=0.166 Sum_probs=26.6
Q ss_pred CceeEEEEcCCCCEEEEEeCCCCcEEEEEecC
Q 027522 58 GLITDFLISLDDRFLYFSNWLHGDIRQYNIED 89 (222)
Q Consensus 58 ~~~adI~iSpDgrfLYvSnRgh~sI~vf~i~d 89 (222)
..+..|++|+|+.||.||--+...|..|-+..
T Consensus 57 ~fpNGVals~d~~~vlv~Et~~~Ri~rywl~G 88 (89)
T PF03088_consen 57 YFPNGVALSPDESFVLVAETGRYRILRYWLKG 88 (89)
T ss_dssp SSEEEEEE-TTSSEEEEEEGGGTEEEEEESSS
T ss_pred CccCeEEEcCCCCEEEEEeccCceEEEEEEeC
Confidence 45689999999999999998888888887753
No 200
>KOG1063 consensus RNA polymerase II elongator complex, subunit ELP2, WD repeat superfamily [Chromatin structure and dynamics; Transcription]
Probab=73.38 E-value=62 Score=33.69 Aligned_cols=112 Identities=16% Similarity=0.235 Sum_probs=68.5
Q ss_pred EEcCCCCeEEEEeccCceEEEEEeC-CCCCeeEEEEEEecCcccccccCCCCCCceeEEEEcCCCCEEEEEeCCCCcEEE
Q 027522 6 LHDPSKDIGFVGCALASTMVRFSKT-QDGSWNHEVAISVKSLKVQNWILPEMPGLITDFLISLDDRFLYFSNWLHGDIRQ 84 (222)
Q Consensus 6 afhP~g~~aYvv~ELsstV~~~~~d-~~g~~~~~q~is~~p~~~~g~~~~~~~~~~adI~iSpDgrfLYvSnRgh~sI~v 84 (222)
-+||.+..+-. .-.+.|+.++..+ ..|-|.-.-..-.. .|.. ..=-+.+.||++.++-+..| +|....
T Consensus 274 ~W~p~~~~LLS-ASaDksmiiW~pd~~tGiWv~~vRlGe~----gg~a-----~GF~g~lw~~n~~~ii~~g~-~Gg~hl 342 (764)
T KOG1063|consen 274 WWHPEGLDLLS-ASADKSMIIWKPDENTGIWVDVVRLGEV----GGSA-----GGFWGGLWSPNSNVIIAHGR-TGGFHL 342 (764)
T ss_pred EEccchhhhee-cccCcceEEEecCCccceEEEEEEeecc----cccc-----cceeeEEEcCCCCEEEEecc-cCcEEE
Confidence 35566532222 2246778888886 35777544333111 1110 11268999999988866665 778999
Q ss_pred EEecCCCCCeEEEEEEecceeecCCceeeeeCCCCCCCCCCccccCcccCCCCeeEEECCCCCEEEEE-----eCCCCcc
Q 027522 85 YNIEDPKNPVLTGQIWVGGLFRKGSPVVAVTDDGQPYQSDVPEVQGHRLRGGPQMIQLSLDGKRLYVT-----NSLFSAW 159 (222)
Q Consensus 85 f~i~d~~~~~L~~~v~~gG~~~~~~~~~~~~~~~~~~~p~~~~v~G~~~~ggPr~~~lspdGk~Lyva-----Nsl~~~w 159 (222)
|.-.+ +.....+..+.|.+ ++-++++-+|.|+||+.+ .-||++|
T Consensus 343 Wkt~d--~~~w~~~~~iSGH~-----------------------------~~V~dv~W~psGeflLsvs~DQTTRlFa~w 391 (764)
T KOG1063|consen 343 WKTKD--KTFWTQEPVISGHV-----------------------------DGVKDVDWDPSGEFLLSVSLDQTTRLFARW 391 (764)
T ss_pred EeccC--ccceeecccccccc-----------------------------ccceeeeecCCCCEEEEeccccceeeeccc
Confidence 98322 23333333444432 347799999999999975 4688888
No 201
>KOG0303 consensus Actin-binding protein Coronin, contains WD40 repeats [Cytoskeleton]
Probab=73.34 E-value=54 Score=32.18 Aligned_cols=72 Identities=13% Similarity=0.243 Sum_probs=48.2
Q ss_pred EEEcCCCCeEEEEeccCceEEEEEeCCCCCeeEEEEEEecCcccccccCCCCCCceeEEEEcCCCCEEEEEeCCCCcEEE
Q 027522 5 FLHDPSKDIGFVGCALASTMVRFSKTQDGSWNHEVAISVKSLKVQNWILPEMPGLITDFLISLDDRFLYFSNWLHGDIRQ 84 (222)
Q Consensus 5 ~afhP~g~~aYvv~ELsstV~~~~~d~~g~~~~~q~is~~p~~~~g~~~~~~~~~~adI~iSpDgrfLYvSnRgh~sI~v 84 (222)
.++||...-+-+..--+++|..|.-. +|. ..+++- +|-.+.-+..+-||..|-.+|| +..|++
T Consensus 137 V~wHPtA~NVLlsag~Dn~v~iWnv~-tge----ali~l~-----------hpd~i~S~sfn~dGs~l~Ttck-DKkvRv 199 (472)
T KOG0303|consen 137 VQWHPTAPNVLLSAGSDNTVSIWNVG-TGE----ALITLD-----------HPDMVYSMSFNRDGSLLCTTCK-DKKVRV 199 (472)
T ss_pred EeecccchhhHhhccCCceEEEEecc-CCc----eeeecC-----------CCCeEEEEEeccCCceeeeecc-cceeEE
Confidence 35677766666666667777777653 231 122221 2356789999999999999998 557999
Q ss_pred EEecCCCCCeEE
Q 027522 85 YNIEDPKNPVLT 96 (222)
Q Consensus 85 f~i~d~~~~~L~ 96 (222)
|+ |-+++++
T Consensus 200 ~d---pr~~~~v 208 (472)
T KOG0303|consen 200 ID---PRRGTVV 208 (472)
T ss_pred Ec---CCCCcEe
Confidence 95 4456664
No 202
>COG3823 Glutamine cyclotransferase [Posttranslational modification, protein turnover, chaperones]
Probab=73.18 E-value=14 Score=33.51 Aligned_cols=61 Identities=20% Similarity=0.285 Sum_probs=43.8
Q ss_pred EEEEEeCCCCcEEEEEecCCCCCeEEEEEEecceeecCCceeeeeCCCCCCCCCCccccCcccCCCCeeEEECCCCCEEE
Q 027522 71 FLYFSNWLHGDIRQYNIEDPKNPVLTGQIWVGGLFRKGSPVVAVTDDGQPYQSDVPEVQGHRLRGGPQMIQLSLDGKRLY 150 (222)
Q Consensus 71 fLYvSnRgh~sI~vf~i~d~~~~~L~~~v~~gG~~~~~~~~~~~~~~~~~~~p~~~~v~G~~~~ggPr~~~lspdGk~Ly 150 (222)
.||+.-|..+.|++. +|.+++.+..|.+-|..+- ..+.+.+ -..++-++..|++.|+|
T Consensus 187 ~lyANVw~t~~I~rI---~p~sGrV~~widlS~L~~~------------------~~~~~~~-~nvlNGIA~~~~~~r~~ 244 (262)
T COG3823 187 ELYANVWQTTRIARI---DPDSGRVVAWIDLSGLLKE------------------LNLDKSN-DNVLNGIAHDPQQDRFL 244 (262)
T ss_pred EEEEeeeeecceEEE---cCCCCcEEEEEEccCCchh------------------cCccccc-cccccceeecCcCCeEE
Confidence 689999999999976 5678999888887654321 0011111 12377899999999999
Q ss_pred EEe
Q 027522 151 VTN 153 (222)
Q Consensus 151 vaN 153 (222)
++-
T Consensus 245 iTG 247 (262)
T COG3823 245 ITG 247 (262)
T ss_pred Eec
Confidence 998
No 203
>KOG0316 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=73.16 E-value=46 Score=30.81 Aligned_cols=72 Identities=21% Similarity=0.352 Sum_probs=48.3
Q ss_pred CEEEEEeCCCCcEEEEEecCCCCCeEEEEEEecceeecCCceeeeeCCCCCCCCCCccccCcccCCCCeeEEECCCCCEE
Q 027522 70 RFLYFSNWLHGDIRQYNIEDPKNPVLTGQIWVGGLFRKGSPVVAVTDDGQPYQSDVPEVQGHRLRGGPQMIQLSLDGKRL 149 (222)
Q Consensus 70 rfLYvSnRgh~sI~vf~i~d~~~~~L~~~v~~gG~~~~~~~~~~~~~~~~~~~p~~~~v~G~~~~ggPr~~~lspdGk~L 149 (222)
....+..-.+|.++.|+|.. +++...- -|.. -..+.+|+||..+
T Consensus 155 ~heIvaGS~DGtvRtydiR~---G~l~sDy-----------------------------~g~p----it~vs~s~d~nc~ 198 (307)
T KOG0316|consen 155 EHEIVAGSVDGTVRTYDIRK---GTLSSDY-----------------------------FGHP----ITSVSFSKDGNCS 198 (307)
T ss_pred ccEEEeeccCCcEEEEEeec---ceeehhh-----------------------------cCCc----ceeEEecCCCCEE
Confidence 34557777789999999954 5552111 1333 3678999999999
Q ss_pred EEEeCCCCccccccccccccCCcEEEEEEeeCCCCCee------eccceeEe
Q 027522 150 YVTNSLFSAWDCQFYPELKEKGSHMLQIDVNSEKGGMA------INPNFFVD 195 (222)
Q Consensus 150 yvaNsl~~~wd~Q~yp~~~s~~~~i~~~dvd~~~G~l~------~~~~f~vd 195 (222)
++.. - +.++-.+ |.+||+|- .|..|.+|
T Consensus 199 La~~--------l--------~stlrLl--Dk~tGklL~sYkGhkn~eykld 232 (307)
T KOG0316|consen 199 LASS--------L--------DSTLRLL--DKETGKLLKSYKGHKNMEYKLD 232 (307)
T ss_pred EEee--------c--------cceeeec--ccchhHHHHHhcccccceeeee
Confidence 9987 2 4555556 55888871 56666665
No 204
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=72.78 E-value=66 Score=33.36 Aligned_cols=61 Identities=15% Similarity=0.145 Sum_probs=45.8
Q ss_pred CCEEEEEeCCCCcEEEEEecCCCCCeEEEEEEecceeecCCceeeeeCCCCCCCCCCccccCcccCCCCeeEEECCCCCE
Q 027522 69 DRFLYFSNWLHGDIRQYNIEDPKNPVLTGQIWVGGLFRKGSPVVAVTDDGQPYQSDVPEVQGHRLRGGPQMIQLSLDGKR 148 (222)
Q Consensus 69 grfLYvSnRgh~sI~vf~i~d~~~~~L~~~v~~gG~~~~~~~~~~~~~~~~~~~p~~~~v~G~~~~ggPr~~~lspdGk~ 148 (222)
|-+|. .++..|.|..|+-+ ++.|+.+|.+ . |.++..+-+|..
T Consensus 434 gg~Ll-g~~ss~~~~fydW~---~~~lVrrI~v------------------------------~----~k~v~w~d~g~l 475 (794)
T KOG0276|consen 434 GGPLL-GVRSSDFLCFYDWE---SGELVRRIEV------------------------------T----SKHVYWSDNGEL 475 (794)
T ss_pred CCceE-EEEeCCeEEEEEcc---cceEEEEEee------------------------------c----cceeEEecCCCE
Confidence 33443 44578999999873 4889988887 1 778999999998
Q ss_pred EEEEeCCCCccccccccccccCCcEEEEEEeeCC
Q 027522 149 LYVTNSLFSAWDCQFYPELKEKGSHMLQIDVNSE 182 (222)
Q Consensus 149 LyvaNsl~~~wd~Q~yp~~~s~~~~i~~~dvd~~ 182 (222)
+.+|+ .++--+++++.|..
T Consensus 476 Vai~~---------------d~Sfyil~~n~d~v 494 (794)
T KOG0276|consen 476 VAIAG---------------DDSFYILKFNADAV 494 (794)
T ss_pred EEEEe---------------cCceeEEEecHHHH
Confidence 88888 35667888877643
No 205
>KOG1963 consensus WD40 repeat protein [General function prediction only]
Probab=72.16 E-value=54 Score=34.45 Aligned_cols=99 Identities=14% Similarity=0.134 Sum_probs=60.3
Q ss_pred EEEcCCCCeEEEEeccCceEEEEEeCC--CCCeeEEEEEEecCcccccccCCCCCCceeEEEEcCCCCEEEEEeCCCCcE
Q 027522 5 FLHDPSKDIGFVGCALASTMVRFSKTQ--DGSWNHEVAISVKSLKVQNWILPEMPGLITDFLISLDDRFLYFSNWLHGDI 82 (222)
Q Consensus 5 ~afhP~g~~aYvv~ELsstV~~~~~d~--~g~~~~~q~is~~p~~~~g~~~~~~~~~~adI~iSpDgrfLYvSnRgh~sI 82 (222)
+++||+++++-..- .++.|.++.--. +.+. +.++. -|-. +....+..|+||-+||-..| .+.+
T Consensus 211 ~~~spn~~~~Aa~d-~dGrI~vw~d~~~~~~~~----t~t~l-----HWH~----~~V~~L~fS~~G~~LlSGG~-E~VL 275 (792)
T KOG1963|consen 211 VALSPNERYLAAGD-SDGRILVWRDFGSSDDSE----TCTLL-----HWHH----DEVNSLSFSSDGAYLLSGGR-EGVL 275 (792)
T ss_pred EEeccccceEEEec-cCCcEEEEeccccccccc----cceEE-----Eecc----cccceeEEecCCceEeeccc-ceEE
Confidence 57788888775543 456677775321 2222 11221 1211 23467889999999998776 5678
Q ss_pred EEEEecCCCCCeEEEEEEecceeecCCceeeeeCCCCCCCCCCccccCcccCCCCeeEEECCCCCEEEEEe
Q 027522 83 RQYNIEDPKNPVLTGQIWVGGLFRKGSPVVAVTDDGQPYQSDVPEVQGHRLRGGPQMIQLSLDGKRLYVTN 153 (222)
Q Consensus 83 ~vf~i~d~~~~~L~~~v~~gG~~~~~~~~~~~~~~~~~~~p~~~~v~G~~~~ggPr~~~lspdGk~LyvaN 153 (222)
+.|.... ++.++. +- -|.. =+.+++||||..-.+..
T Consensus 276 v~Wq~~T-~~kqfL---PR---------------------------Lgs~----I~~i~vS~ds~~~sl~~ 311 (792)
T KOG1963|consen 276 VLWQLET-GKKQFL---PR---------------------------LGSP----ILHIVVSPDSDLYSLVL 311 (792)
T ss_pred EEEeecC-CCcccc---cc---------------------------cCCe----eEEEEEcCCCCeEEEEe
Confidence 8898854 334441 11 0222 47899999999766766
No 206
>PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A ....
Probab=71.27 E-value=56 Score=26.82 Aligned_cols=75 Identities=13% Similarity=0.140 Sum_probs=40.5
Q ss_pred CCCeEEEEeccCceEEEEEeCCCCCeeEEEEEEe-cCcccccccCCCCCCceeEEEEcCCCCEEEEEeCCCCcEEEEEec
Q 027522 10 SKDIGFVGCALASTMVRFSKTQDGSWNHEVAISV-KSLKVQNWILPEMPGLITDFLISLDDRFLYFSNWLHGDIRQYNIE 88 (222)
Q Consensus 10 ~g~~aYvv~ELsstV~~~~~d~~g~~~~~q~is~-~p~~~~g~~~~~~~~~~adI~iSpDgrfLYvSnRgh~sI~vf~i~ 88 (222)
.+..+||.++ ++.|..+.. ++|+......... ++.. .........++..||++.. .+.|..+++
T Consensus 75 ~~~~v~v~~~-~~~l~~~d~-~tG~~~W~~~~~~~~~~~-----------~~~~~~~~~~~~~~~~~~~-~g~l~~~d~- 139 (238)
T PF13360_consen 75 DGGRVYVGTS-DGSLYALDA-KTGKVLWSIYLTSSPPAG-----------VRSSSSPAVDGDRLYVGTS-SGKLVALDP- 139 (238)
T ss_dssp ETTEEEEEET-TSEEEEEET-TTSCEEEEEEE-SSCTCS-----------TB--SEEEEETTEEEEEET-CSEEEEEET-
T ss_pred cccccccccc-eeeeEeccc-CCcceeeeeccccccccc-----------cccccCceEecCEEEEEec-cCcEEEEec-
Confidence 4567788874 446777763 4565433311111 1111 1122233333888998886 677888865
Q ss_pred CCCCCeEEEEEEe
Q 027522 89 DPKNPVLTGQIWV 101 (222)
Q Consensus 89 d~~~~~L~~~v~~ 101 (222)
.+++++-+...
T Consensus 140 --~tG~~~w~~~~ 150 (238)
T PF13360_consen 140 --KTGKLLWKYPV 150 (238)
T ss_dssp --TTTEEEEEEES
T ss_pred --CCCcEEEEeec
Confidence 34777555544
No 207
>PF10647 Gmad1: Lipoprotein LpqB beta-propeller domain; InterPro: IPR018910 The Gmad1 domain is found associated with IPR019606 from INTERPRO, in bacterial spore formation. It is predicted to have a beta-propeller fold and to have a passive binding role rather than a catalytic function owing to the low number of conserved hydrophilic residues.
Probab=70.86 E-value=74 Score=28.00 Aligned_cols=35 Identities=14% Similarity=-0.011 Sum_probs=25.2
Q ss_pred ceeEEEEcCCCCEEEEEeC--CCCcEEEEEecCCCCC
Q 027522 59 LITDFLISLDDRFLYFSNW--LHGDIRQYNIEDPKNP 93 (222)
Q Consensus 59 ~~adI~iSpDgrfLYvSnR--gh~sI~vf~i~d~~~~ 93 (222)
.++++.|||||..+-+-.+ +.+.|.+-.|.....+
T Consensus 113 ~I~~l~vSpDG~RvA~v~~~~~~~~v~va~V~r~~~g 149 (253)
T PF10647_consen 113 RITALRVSPDGTRVAVVVEDGGGGRVYVAGVVRDGDG 149 (253)
T ss_pred ceEEEEECCCCcEEEEEEecCCCCeEEEEEEEeCCCC
Confidence 5799999999988765553 4577888777654444
No 208
>PF15492 Nbas_N: Neuroblastoma-amplified sequence, N terminal
Probab=69.38 E-value=46 Score=30.89 Aligned_cols=70 Identities=13% Similarity=0.164 Sum_probs=48.5
Q ss_pred EEEcCCCCeEEEEeccCceEEEEEeCCCCCee-EEEEEEecCcccccccCCCCCCceeEEEEcCCCCEEEEEeCCCCcEE
Q 027522 5 FLHDPSKDIGFVGCALASTMVRFSKTQDGSWN-HEVAISVKSLKVQNWILPEMPGLITDFLISLDDRFLYFSNWLHGDIR 83 (222)
Q Consensus 5 ~afhP~g~~aYvv~ELsstV~~~~~d~~g~~~-~~q~is~~p~~~~g~~~~~~~~~~adI~iSpDgrfLYvSnRgh~sI~ 83 (222)
|+-..+|+.+-++.+ ++..+.-..| .++ +.....+|.+++..| .-+.-|||+.+|-.+ +..|.|.
T Consensus 3 ~~~~~~Gk~lAi~qd---~~iEiRsa~D-df~si~~kcqVpkD~~PQW---------Rkl~WSpD~tlLa~a-~S~G~i~ 68 (282)
T PF15492_consen 3 LALSSDGKLLAILQD---QCIEIRSAKD-DFSSIIGKCQVPKDPNPQW---------RKLAWSPDCTLLAYA-ESTGTIR 68 (282)
T ss_pred eeecCCCcEEEEEec---cEEEEEeccC-CchheeEEEecCCCCCchh---------eEEEECCCCcEEEEE-cCCCeEE
Confidence 677889999888876 3444433222 333 334556776666566 778899999999555 4678999
Q ss_pred EEEec
Q 027522 84 QYNIE 88 (222)
Q Consensus 84 vf~i~ 88 (222)
+|++.
T Consensus 69 vfdl~ 73 (282)
T PF15492_consen 69 VFDLM 73 (282)
T ss_pred EEecc
Confidence 99985
No 209
>KOG0294 consensus WD40 repeat-containing protein [Function unknown]
Probab=67.89 E-value=1.1e+02 Score=29.22 Aligned_cols=30 Identities=20% Similarity=0.227 Sum_probs=24.0
Q ss_pred ceeEEEEcCCCCEEEEEeCCCCcEEEEEecC
Q 027522 59 LITDFLISLDDRFLYFSNWLHGDIRQYNIED 89 (222)
Q Consensus 59 ~~adI~iSpDgrfLYvSnRgh~sI~vf~i~d 89 (222)
..++|.|+|.||.- .|--++..++.|++-.
T Consensus 129 ~Vt~lsiHPS~KLA-LsVg~D~~lr~WNLV~ 158 (362)
T KOG0294|consen 129 QVTDLSIHPSGKLA-LSVGGDQVLRTWNLVR 158 (362)
T ss_pred ccceeEecCCCceE-EEEcCCceeeeehhhc
Confidence 36999999999965 5566788999998743
No 210
>COG2319 FOG: WD40 repeat [General function prediction only]
Probab=67.80 E-value=67 Score=26.35 Aligned_cols=68 Identities=18% Similarity=0.270 Sum_probs=42.8
Q ss_pred EEEcCCCCeEEEEeccCceEEEEEeCCCCCeeEEEEEEecCcccccccCCCCCCceeEEEEcCCCCEEEEEeCCCCcEEE
Q 027522 5 FLHDPSKDIGFVGCALASTMVRFSKTQDGSWNHEVAISVKSLKVQNWILPEMPGLITDFLISLDDRFLYFSNWLHGDIRQ 84 (222)
Q Consensus 5 ~afhP~g~~aYvv~ELsstV~~~~~d~~g~~~~~q~is~~p~~~~g~~~~~~~~~~adI~iSpDgrfLYvSnRgh~sI~v 84 (222)
+.|+|++++..+..+.+.++..+.... + ...+.+... . .....+.++|+++++.++.-..+.|.+
T Consensus 161 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-~--~~~~~~~~~----~--------~~v~~~~~~~~~~~~~~~~~~d~~i~~ 225 (466)
T COG2319 161 LAFSPDGKLLASGSSLDGTIKLWDLRT-G--KPLSTLAGH----T--------DPVSSLAFSPDGGLLIASGSSDGTIRL 225 (466)
T ss_pred EEECCCCCEEEecCCCCCceEEEEcCC-C--ceEEeeccC----C--------CceEEEEEcCCcceEEEEecCCCcEEE
Confidence 789999995555544466677765432 1 112222210 1 345788888999966666566788888
Q ss_pred EEe
Q 027522 85 YNI 87 (222)
Q Consensus 85 f~i 87 (222)
|+.
T Consensus 226 wd~ 228 (466)
T COG2319 226 WDL 228 (466)
T ss_pred EEC
Confidence 855
No 211
>TIGR03118 PEPCTERM_chp_1 conserved hypothetical protein TIGR03118. This model describes and uncharacterized conserved hypothetical protein. Members are found with the C-terminal putative exosortase interaction domain, PEP-CTERM, in Nitrosospira multiformis, Rhodoferax ferrireducens, Solibacter usitatus Ellin6076, and Acidobacteria bacterium Ellin345. It is found without the PEP-CTERM domain in several other species, including Burkholderia ambifaria, Gloeobacter violaceus PCC 7421, and three copies in the Acanthamoeba polyphaga mimivirus.
Probab=67.68 E-value=1.2e+02 Score=28.98 Aligned_cols=74 Identities=14% Similarity=0.161 Sum_probs=44.2
Q ss_pred EEEcCCCCeEEEEeccCceEEEEEeCCC---CCeeEEEEEEecCcccccccCCCCCCceeEEEEcC-------------C
Q 027522 5 FLHDPSKDIGFVGCALASTMVRFSKTQD---GSWNHEVAISVKSLKVQNWILPEMPGLITDFLISL-------------D 68 (222)
Q Consensus 5 ~afhP~g~~aYvv~ELsstV~~~~~d~~---g~~~~~q~is~~p~~~~g~~~~~~~~~~adI~iSp-------------D 68 (222)
++|+|.+ ..+|.+.=+++.++|.-+.+ |.-. .-++++|..+-.. .++.++.|+++. .
T Consensus 28 ia~~p~~-~~WVadngT~~~TlYdg~~~~~~g~~~-~L~vtiP~~~~~~-----~~~~PTGiVfN~~~~F~vt~~g~~~~ 100 (336)
T TIGR03118 28 LSYRPGG-PFWVANTGTGTATLYVGNPDTQPLVQD-PLVVVIPAPPPLA-----AEGTPTGQVFNGSDTFVVSGEGITGP 100 (336)
T ss_pred eEecCCC-CEEEecCCcceEEeecCCcccccCCcc-ceEEEecCCCCCC-----CCCCccEEEEeCCCceEEcCCCcccc
Confidence 6889977 88999998888888865422 3221 1245666322110 114456666653 3
Q ss_pred CCEEEEEeCCCCcEEEEEe
Q 027522 69 DRFLYFSNWLHGDIRQYNI 87 (222)
Q Consensus 69 grfLYvSnRgh~sI~vf~i 87 (222)
.+||+++- +++|+-|.-
T Consensus 101 a~Fif~tE--dGTisaW~p 117 (336)
T TIGR03118 101 SRFLFVTE--DGTLSGWAP 117 (336)
T ss_pred eeEEEEeC--CceEEeecC
Confidence 45677774 778888853
No 212
>KOG0290 consensus Conserved WD40 repeat-containing protein AN11 [Function unknown]
Probab=67.45 E-value=56 Score=31.02 Aligned_cols=32 Identities=16% Similarity=0.282 Sum_probs=28.9
Q ss_pred eeEEEEcCCCCEEEEEeCCCCcEEEEEecCCC
Q 027522 60 ITDFLISLDDRFLYFSNWLHGDIRQYNIEDPK 91 (222)
Q Consensus 60 ~adI~iSpDgrfLYvSnRgh~sI~vf~i~d~~ 91 (222)
..||+.+.+++-+++|.-.+|++++||+.+-+
T Consensus 199 V~DIaf~~~s~~~FASvgaDGSvRmFDLR~le 230 (364)
T KOG0290|consen 199 VYDIAFLKGSRDVFASVGADGSVRMFDLRSLE 230 (364)
T ss_pred eeEEEeccCccceEEEecCCCcEEEEEecccc
Confidence 58999999999999999999999999995533
No 213
>COG3204 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=66.87 E-value=1.2e+02 Score=28.74 Aligned_cols=120 Identities=12% Similarity=0.185 Sum_probs=77.9
Q ss_pred EEEcCCCCeEEEEeccCceEEEEEeCCCCCeeEEEEEEecCcccccccCCCCCCceeEEEEcCCCCEEEEEeCCCCcEEE
Q 027522 5 FLHDPSKDIGFVGCALASTMVRFSKTQDGSWNHEVAISVKSLKVQNWILPEMPGLITDFLISLDDRFLYFSNWLHGDIRQ 84 (222)
Q Consensus 5 ~afhP~g~~aYvv~ELsstV~~~~~d~~g~~~~~q~is~~p~~~~g~~~~~~~~~~adI~iSpDgrfLYvSnRgh~sI~v 84 (222)
++|+|+-+..|++.--..+|.-+..+ |. ...+|++. .+. -+=.|.-.-+|+|+-+.-|. ..+..
T Consensus 91 LTynp~~rtLFav~n~p~~iVElt~~--Gd--lirtiPL~--g~~---------DpE~Ieyig~n~fvi~dER~-~~l~~ 154 (316)
T COG3204 91 LTYNPDTRTLFAVTNKPAAIVELTKE--GD--LIRTIPLT--GFS---------DPETIEYIGGNQFVIVDERD-RALYL 154 (316)
T ss_pred eeeCCCcceEEEecCCCceEEEEecC--Cc--eEEEeccc--ccC---------ChhHeEEecCCEEEEEehhc-ceEEE
Confidence 68999999999998888888888653 52 23444332 222 13568888999999888884 57888
Q ss_pred EEecCCCCCeEE---EEEEecceeecCCceeeeeCCCCCCCCCCccccCcccCCCCeeEEECCCCCEEEEEeCCCCcccc
Q 027522 85 YNIEDPKNPVLT---GQIWVGGLFRKGSPVVAVTDDGQPYQSDVPEVQGHRLRGGPQMIQLSLDGKRLYVTNSLFSAWDC 161 (222)
Q Consensus 85 f~i~d~~~~~L~---~~v~~gG~~~~~~~~~~~~~~~~~~~p~~~~v~G~~~~ggPr~~~lspdGk~LyvaNsl~~~wd~ 161 (222)
|.++. ++..+. .+++.|..- +. .-|=.-++-+|..++|+||-
T Consensus 155 ~~vd~-~t~~~~~~~~~i~L~~~~-------------------------k~-N~GfEGlA~d~~~~~l~~aK-------- 199 (316)
T COG3204 155 FTVDA-DTTVISAKVQKIPLGTTN-------------------------KK-NKGFEGLAWDPVDHRLFVAK-------- 199 (316)
T ss_pred EEEcC-CccEEeccceEEeccccC-------------------------CC-CcCceeeecCCCCceEEEEE--------
Confidence 88854 322221 245554321 00 11233578899999999996
Q ss_pred ccccccccCCcEEEEEEeeC
Q 027522 162 QFYPELKEKGSHMLQIDVNS 181 (222)
Q Consensus 162 Q~yp~~~s~~~~i~~~dvd~ 181 (222)
+ .+-..|+.++..+
T Consensus 200 E------r~P~~I~~~~~~~ 213 (316)
T COG3204 200 E------RNPIGIFEVTQSP 213 (316)
T ss_pred c------cCCcEEEEEecCC
Confidence 5 3556677665544
No 214
>KOG0279 consensus G protein beta subunit-like protein [Signal transduction mechanisms]
Probab=66.79 E-value=48 Score=31.12 Aligned_cols=32 Identities=13% Similarity=0.181 Sum_probs=28.0
Q ss_pred CceeEEEEcCCCCEEEEEeCCCCcEEEEEecC
Q 027522 58 GLITDFLISLDDRFLYFSNWLHGDIRQYNIED 89 (222)
Q Consensus 58 ~~~adI~iSpDgrfLYvSnRgh~sI~vf~i~d 89 (222)
....+|++.+.++-+|+|.-.+-+|.+|++..
T Consensus 16 d~Vt~la~~~~~~~~l~sasrDk~ii~W~L~~ 47 (315)
T KOG0279|consen 16 DWVTALAIKIKNSDILVSASRDKTIIVWKLTS 47 (315)
T ss_pred ceEEEEEeecCCCceEEEcccceEEEEEEecc
Confidence 34689999999999999998899999999954
No 215
>COG4590 ABC-type uncharacterized transport system, permease component [General function prediction only]
Probab=66.58 E-value=22 Score=35.71 Aligned_cols=137 Identities=15% Similarity=0.165 Sum_probs=64.3
Q ss_pred EEEcCCCCeEEEEeccCceEEEEEeCCCCCeeEEEEEEecCcccc---cccCCCCCCceeEEEEcCCCCEEEEEeC----
Q 027522 5 FLHDPSKDIGFVGCALASTMVRFSKTQDGSWNHEVAISVKSLKVQ---NWILPEMPGLITDFLISLDDRFLYFSNW---- 77 (222)
Q Consensus 5 ~afhP~g~~aYvv~ELsstV~~~~~d~~g~~~~~q~is~~p~~~~---g~~~~~~~~~~adI~iSpDgrfLYvSnR---- 77 (222)
+...|+|++.||.+- |++.++..+. -.++..+.++--|.+.. ++.+.-..+..+=++.|+||- ||-|
T Consensus 226 llL~Pdg~~LYv~~g--~~~~v~~L~~-r~l~~rkl~~dspg~~~~~Vte~l~lL~Gg~SLLv~~~dG~---vsQWFdvr 299 (733)
T COG4590 226 LLLTPDGKTLYVRTG--SELVVALLDK-RSLQIRKLVDDSPGDSRHQVTEQLYLLSGGFSLLVVHEDGL---VSQWFDVR 299 (733)
T ss_pred hEECCCCCEEEEecC--CeEEEEeecc-cccchhhhhhcCCCchHHHHHHHHHHHhCceeEEEEcCCCc---eeeeeeee
Confidence 567899999999987 7777776542 23444444433232211 000000112346677788874 3333
Q ss_pred C-----CCcEEEEEecCCCCCeEEEEEEecce--eecCCceeeeeCCCCCCCCCCccccCcccCCCCeeEEECCCCCEEE
Q 027522 78 L-----HGDIRQYNIEDPKNPVLTGQIWVGGL--FRKGSPVVAVTDDGQPYQSDVPEVQGHRLRGGPQMIQLSLDGKRLY 150 (222)
Q Consensus 78 g-----h~sI~vf~i~d~~~~~L~~~v~~gG~--~~~~~~~~~~~~~~~~~~p~~~~v~G~~~~ggPr~~~lspdGk~Ly 150 (222)
. -+-|+.|..+...-.-|.-....-|- +.+.++..+-.+ ..+ +.+-=.+++-+|+..++||.+.+|+
T Consensus 300 ~~~~p~l~h~R~f~l~pa~~~~l~pe~~rkgF~~l~~~G~L~~f~s---t~~---~~lL~~~~~~~~~~~~~Sp~~~~Ll 373 (733)
T COG4590 300 RDGQPHLNHIRNFKLAPAEVQFLLPETNRKGFYSLYRNGTLQSFYS---TSE---KLLLFERAYQAPQLVAMSPNQAYLL 373 (733)
T ss_pred cCCCCcceeeeccccCcccceeeccccccceEEEEcCCCceeeeec---ccC---cceehhhhhcCcceeeeCcccchhe
Confidence 1 13355555531111111100011110 111111111100 000 1111234455799999999999999
Q ss_pred EEe
Q 027522 151 VTN 153 (222)
Q Consensus 151 vaN 153 (222)
+-|
T Consensus 374 ~e~ 376 (733)
T COG4590 374 SED 376 (733)
T ss_pred eec
Confidence 998
No 216
>KOG1520 consensus Predicted alkaloid synthase/Surface mucin Hemomucin [General function prediction only]
Probab=66.53 E-value=27 Score=33.57 Aligned_cols=18 Identities=33% Similarity=0.390 Sum_probs=16.4
Q ss_pred CCeeEEECCCCCEEEEEe
Q 027522 136 GPQMIQLSLDGKRLYVTN 153 (222)
Q Consensus 136 gPr~~~lspdGk~LyvaN 153 (222)
.|+-+||||||.++++|-
T Consensus 220 F~NGlaLS~d~sfvl~~E 237 (376)
T KOG1520|consen 220 FPNGLALSPDGSFVLVAE 237 (376)
T ss_pred ccccccCCCCCCEEEEEe
Confidence 489999999999999995
No 217
>PF05096 Glu_cyclase_2: Glutamine cyclotransferase; InterPro: IPR007788 This family of enzymes 2.3.2.5 from EC catalyse the cyclization of free L-glutamine and N-terminal glutaminyl residues in proteins to pyroglutamate (5-oxoproline) and pyroglutamyl residues respectively []. This family includes plant and bacterial enzymes and seems unrelated to the mammalian enzymes.; PDB: 3NOK_B 2FAW_A 2IWA_A 3NOM_A 3NOL_A 3MBR_X.
Probab=66.37 E-value=1.1e+02 Score=28.14 Aligned_cols=131 Identities=18% Similarity=0.209 Sum_probs=75.9
Q ss_pred CeEEEEeccCce--EEEEEeCCCCCeeEEEEEEecCcccccccCCCCCCceeEEEEcCCCCEEEEEeCCCCcEEEEEecC
Q 027522 12 DIGFVGCALAST--MVRFSKTQDGSWNHEVAISVKSLKVQNWILPEMPGLITDFLISLDDRFLYFSNWLHGDIRQYNIED 89 (222)
Q Consensus 12 ~~aYvv~ELsst--V~~~~~d~~g~~~~~q~is~~p~~~~g~~~~~~~~~~adI~iSpDgrfLYvSnRgh~sI~vf~i~d 89 (222)
...|..+-+-.. |.++.. ++|+ ..+...+++.-|. + .|.+- +..||.=.|-.+..-+|+.+
T Consensus 56 g~LyESTG~yG~S~l~~~d~-~tg~--~~~~~~l~~~~Fg-E----------Git~~--~d~l~qLTWk~~~~f~yd~~- 118 (264)
T PF05096_consen 56 GTLYESTGLYGQSSLRKVDL-ETGK--VLQSVPLPPRYFG-E----------GITIL--GDKLYQLTWKEGTGFVYDPN- 118 (264)
T ss_dssp TEEEEEECSTTEEEEEEEET-TTSS--EEEEEE-TTT--E-E----------EEEEE--TTEEEEEESSSSEEEEEETT-
T ss_pred CEEEEeCCCCCcEEEEEEEC-CCCc--EEEEEECCccccc-e----------eEEEE--CCEEEEEEecCCeEEEEccc-
Confidence 356666666543 554444 3453 4566677766553 1 23333 56899999999998888663
Q ss_pred CCCCeEEEEEEecceeecCCceeeeeCCCCCCCCCCccccCcccCCCCeeEEECCCCCEEEEEeCCCCcccccccccccc
Q 027522 90 PKNPVLTGQIWVGGLFRKGSPVVAVTDDGQPYQSDVPEVQGHRLRGGPQMIQLSLDGKRLYVTNSLFSAWDCQFYPELKE 169 (222)
Q Consensus 90 ~~~~~L~~~v~~gG~~~~~~~~~~~~~~~~~~~p~~~~v~G~~~~ggPr~~~lspdGk~LyvaNsl~~~wd~Q~yp~~~s 169 (222)
+.+.+++...-| +|. -|.-||+.|++++
T Consensus 119 --tl~~~~~~~y~~-------------------------EGW---------GLt~dg~~Li~SD---------------- 146 (264)
T PF05096_consen 119 --TLKKIGTFPYPG-------------------------EGW---------GLTSDGKRLIMSD---------------- 146 (264)
T ss_dssp --TTEEEEEEE-SS-------------------------S-----------EEEECSSCEEEE-----------------
T ss_pred --cceEEEEEecCC-------------------------cce---------EEEcCCCEEEEEC----------------
Confidence 477777766522 244 3447999999998
Q ss_pred CCcEEEEEEeeCCCCCeeeccceeEecCCCCCCCcceeeeecCCCCcC
Q 027522 170 KGSHMLQIDVNSEKGGMAINPNFFVDFEAEPDGPALAHEMRYPGGDCT 217 (222)
Q Consensus 170 ~~~~i~~~dvd~~~G~l~~~~~f~vdf~~~~~g~~~~h~~r~~~gd~~ 217 (222)
.+..+..+ ||++-. ......|-.++.|-+ ..-|+-|=+|---
T Consensus 147 GS~~L~~~--dP~~f~--~~~~i~V~~~g~pv~--~LNELE~i~G~Iy 188 (264)
T PF05096_consen 147 GSSRLYFL--DPETFK--EVRTIQVTDNGRPVS--NLNELEYINGKIY 188 (264)
T ss_dssp SSSEEEEE---TTT-S--EEEEEE-EETTEE-----EEEEEEETTEEE
T ss_pred CccceEEE--CCcccc--eEEEEEEEECCEECC--CcEeEEEEcCEEE
Confidence 36777777 667654 445566655666655 7778888777533
No 218
>KOG0283 consensus WD40 repeat-containing protein [Function unknown]
Probab=66.22 E-value=35 Score=35.39 Aligned_cols=61 Identities=21% Similarity=0.223 Sum_probs=43.0
Q ss_pred CceeEEEEcCCCCEEEEEeCCCCcEEEEEecCCCCCeEEEEEEecceeecCCceeeeeCCCCCCCCCCccccCcccCCCC
Q 027522 58 GLITDFLISLDDRFLYFSNWLHGDIRQYNIEDPKNPVLTGQIWVGGLFRKGSPVVAVTDDGQPYQSDVPEVQGHRLRGGP 137 (222)
Q Consensus 58 ~~~adI~iSpDgrfLYvSnRgh~sI~vf~i~d~~~~~L~~~v~~gG~~~~~~~~~~~~~~~~~~~p~~~~v~G~~~~ggP 137 (222)
.+.+-|.++|-+.--++|.-.++.|++|.|.+. +.+..-.+ +..-
T Consensus 410 dfVTcVaFnPvDDryFiSGSLD~KvRiWsI~d~---~Vv~W~Dl--------------------------------~~lI 454 (712)
T KOG0283|consen 410 DFVTCVAFNPVDDRYFISGSLDGKVRLWSISDK---KVVDWNDL--------------------------------RDLI 454 (712)
T ss_pred CeeEEEEecccCCCcEeecccccceEEeecCcC---eeEeehhh--------------------------------hhhh
Confidence 567899999944444589889999999999652 22211111 1123
Q ss_pred eeEEECCCCCEEEEEe
Q 027522 138 QMIQLSLDGKRLYVTN 153 (222)
Q Consensus 138 r~~~lspdGk~LyvaN 153 (222)
-.++++|||+..+|..
T Consensus 455 TAvcy~PdGk~avIGt 470 (712)
T KOG0283|consen 455 TAVCYSPDGKGAVIGT 470 (712)
T ss_pred eeEEeccCCceEEEEE
Confidence 4689999999999986
No 219
>KOG1445 consensus Tumor-specific antigen (contains WD repeats) [Cytoskeleton]
Probab=65.05 E-value=8.5 Score=39.79 Aligned_cols=67 Identities=15% Similarity=0.107 Sum_probs=39.5
Q ss_pred EEEcCCCCeEEEEeccCceEEEEEeCCCCCeeEEEEEEecCcccccccCCCCCCceeEEEEcCCCCEEEEEeCCCCcEEE
Q 027522 5 FLHDPSKDIGFVGCALASTMVRFSKTQDGSWNHEVAISVKSLKVQNWILPEMPGLITDFLISLDDRFLYFSNWLHGDIRQ 84 (222)
Q Consensus 5 ~afhP~g~~aYvv~ELsstV~~~~~d~~g~~~~~q~is~~p~~~~g~~~~~~~~~~adI~iSpDgrfLYvSnRgh~sI~v 84 (222)
+-|||=..-+..+.--++||-.|... +++.... +.|.. ..+-+|+-|||||.+-.-| -++.|+|
T Consensus 683 lRfHPLAadvLa~asyd~Ti~lWDl~-~~~~~~~---------l~gHt-----dqIf~~AWSpdGr~~AtVc-KDg~~rV 746 (1012)
T KOG1445|consen 683 LRFHPLAADVLAVASYDSTIELWDLA-NAKLYSR---------LVGHT-----DQIFGIAWSPDGRRIATVC-KDGTLRV 746 (1012)
T ss_pred EEecchhhhHhhhhhccceeeeeehh-hhhhhhe---------eccCc-----CceeEEEECCCCcceeeee-cCceEEE
Confidence 34666555555555555666655442 2221111 11211 3468999999999996555 4789999
Q ss_pred EEe
Q 027522 85 YNI 87 (222)
Q Consensus 85 f~i 87 (222)
|.-
T Consensus 747 y~P 749 (1012)
T KOG1445|consen 747 YEP 749 (1012)
T ss_pred eCC
Confidence 965
No 220
>TIGR03032 conserved hypothetical protein TIGR03032. This protein family is uncharacterized. A number of motifs are conserved perfectly among all member sequences. The function of this protein is unknown.
Probab=64.85 E-value=34 Score=32.47 Aligned_cols=48 Identities=17% Similarity=0.179 Sum_probs=32.2
Q ss_pred CEEEEEeCCCCcEEEEEecCCCCCeEEEEEEecceeecCCceeeeeCCCCCCCCCCccccCcccCCCCeeEEECCCCCEE
Q 027522 70 RFLYFSNWLHGDIRQYNIEDPKNPVLTGQIWVGGLFRKGSPVVAVTDDGQPYQSDVPEVQGHRLRGGPQMIQLSLDGKRL 149 (222)
Q Consensus 70 rfLYvSnRgh~sI~vf~i~d~~~~~L~~~v~~gG~~~~~~~~~~~~~~~~~~~p~~~~v~G~~~~ggPr~~~lspdGk~L 149 (222)
--||++|.+.+.|..++. .+++..--.. +.|-||-+.+. |++|
T Consensus 213 grLwvldsgtGev~~vD~---~~G~~e~Va~--------------------------------vpG~~rGL~f~--G~ll 255 (335)
T TIGR03032 213 GKLWLLNSGRGELGYVDP---QAGKFQPVAF--------------------------------LPGFTRGLAFA--GDFA 255 (335)
T ss_pred CeEEEEECCCCEEEEEcC---CCCcEEEEEE--------------------------------CCCCCccccee--CCEE
Confidence 458999999999887754 3344411111 22238888886 9999
Q ss_pred EEEeC
Q 027522 150 YVTNS 154 (222)
Q Consensus 150 yvaNs 154 (222)
+|+=|
T Consensus 256 vVgmS 260 (335)
T TIGR03032 256 FVGLS 260 (335)
T ss_pred EEEec
Confidence 99876
No 221
>KOG2314 consensus Translation initiation factor 3, subunit b (eIF-3b) [Translation, ribosomal structure and biogenesis]
Probab=63.67 E-value=34 Score=34.90 Aligned_cols=51 Identities=20% Similarity=0.289 Sum_probs=35.6
Q ss_pred CEEEEEeC-CCCcEEEEEec-CCCCCeEEEEEEecceeecCCceeeeeCCCCCCCCCCccccCcccCCCCeeEEECCCCC
Q 027522 70 RFLYFSNW-LHGDIRQYNIE-DPKNPVLTGQIWVGGLFRKGSPVVAVTDDGQPYQSDVPEVQGHRLRGGPQMIQLSLDGK 147 (222)
Q Consensus 70 rfLYvSnR-gh~sI~vf~i~-d~~~~~L~~~v~~gG~~~~~~~~~~~~~~~~~~~p~~~~v~G~~~~ggPr~~~lspdGk 147 (222)
||.-.|.- -..+++.|.+. .+.+++|+..+.- ++ -+.+..||.|+
T Consensus 459 kF~vi~g~~~k~tvsfY~~e~~~~~~~lVk~~dk-----------------------------~~----~N~vfwsPkG~ 505 (698)
T KOG2314|consen 459 KFAVISGNTVKNTVSFYAVETNIKKPSLVKELDK-----------------------------KF----ANTVFWSPKGR 505 (698)
T ss_pred eEEEEEccccccceeEEEeecCCCchhhhhhhcc-----------------------------cc----cceEEEcCCCc
Confidence 45444432 35789999997 4567777544332 22 67899999999
Q ss_pred EEEEEe
Q 027522 148 RLYVTN 153 (222)
Q Consensus 148 ~LyvaN 153 (222)
|+.||+
T Consensus 506 fvvva~ 511 (698)
T KOG2314|consen 506 FVVVAA 511 (698)
T ss_pred EEEEEE
Confidence 999998
No 222
>KOG0278 consensus Serine/threonine kinase receptor-associated protein [Lipid transport and metabolism]
Probab=63.39 E-value=46 Score=31.09 Aligned_cols=66 Identities=24% Similarity=0.202 Sum_probs=44.3
Q ss_pred EcCCCCeEEEEeccCceEEEEEeCCCCCeeEEEEEEecCcccccccCCCCCCceeEEEEcCCCCEEEEEeCCCCcEEEEE
Q 027522 7 HDPSKDIGFVGCALASTMVRFSKTQDGSWNHEVAISVKSLKVQNWILPEMPGLITDFLISLDDRFLYFSNWLHGDIRQYN 86 (222)
Q Consensus 7 fhP~g~~aYvv~ELsstV~~~~~d~~g~~~~~q~is~~p~~~~g~~~~~~~~~~adI~iSpDgrfLYvSnRgh~sI~vf~ 86 (222)
.||+. ..||..--+-.+++|.|+. |.- ..+. ..|. ++..-.++.||||- ||+|.--+|+|+.|.
T Consensus 232 L~P~k-~~fVaGged~~~~kfDy~T-geE----i~~~----nkgh-----~gpVhcVrFSPdGE-~yAsGSEDGTirlWQ 295 (334)
T KOG0278|consen 232 LHPKK-EFFVAGGEDFKVYKFDYNT-GEE----IGSY----NKGH-----FGPVHCVRFSPDGE-LYASGSEDGTIRLWQ 295 (334)
T ss_pred ccCCC-ceEEecCcceEEEEEeccC-Cce----eeec----ccCC-----CCceEEEEECCCCc-eeeccCCCceEEEEE
Confidence 58888 5566554467788887752 311 1111 1232 13356899999995 899999999999999
Q ss_pred ec
Q 027522 87 IE 88 (222)
Q Consensus 87 i~ 88 (222)
..
T Consensus 296 t~ 297 (334)
T KOG0278|consen 296 TT 297 (334)
T ss_pred ec
Confidence 84
No 223
>TIGR02171 Fb_sc_TIGR02171 Fibrobacter succinogenes paralogous family TIGR02171. This model describes a paralogous family of the rumen bacterium Fibrobacter succinogenes. Eleven members are found in Fibrobacter succinogenes S85, averaging over 900 amino acids in length. More than half are predicted lipoproteins. The function is unknown.
Probab=63.23 E-value=32 Score=36.69 Aligned_cols=36 Identities=22% Similarity=0.315 Sum_probs=26.2
Q ss_pred EECCCCCEEEEEeCCCCccccccccccccCCcEEEEEEeeCCCCCe
Q 027522 141 QLSLDGKRLYVTNSLFSAWDCQFYPELKEKGSHMLQIDVNSEKGGM 186 (222)
Q Consensus 141 ~lspdGk~LyvaNsl~~~wd~Q~yp~~~s~~~~i~~~dvd~~~G~l 186 (222)
.+||||++|--|.| + |.++....|+..|+++...+|
T Consensus 356 ~~SPDG~~vAY~ts--------~--e~~~g~s~vYv~~L~t~~~~~ 391 (912)
T TIGR02171 356 DISPDGKKVAFCTG--------I--EGLPGKSSVYVRNLNASGSGL 391 (912)
T ss_pred cCCCCCCEEEEEEe--------e--cCCCCCceEEEEehhccCCCc
Confidence 58999999988652 2 344456778888888777665
No 224
>KOG3914 consensus WD repeat protein WDR4 [Function unknown]
Probab=63.08 E-value=1.2e+02 Score=29.50 Aligned_cols=98 Identities=13% Similarity=0.084 Sum_probs=58.4
Q ss_pred EEcCCCCeEEEEeccCceEEEEEeCCCC-CeeEEEEEEecCcccccccCCCCCCceeEEEEcCCCCEEEEEeCCCCcEEE
Q 027522 6 LHDPSKDIGFVGCALASTMVRFSKTQDG-SWNHEVAISVKSLKVQNWILPEMPGLITDFLISLDDRFLYFSNWLHGDIRQ 84 (222)
Q Consensus 6 afhP~g~~aYvv~ELsstV~~~~~d~~g-~~~~~q~is~~p~~~~g~~~~~~~~~~adI~iSpDgrfLYvSnRgh~sI~v 84 (222)
+++|+++.+||.+-- ....+|.++.+. .++..++..++- .+.+|.+-.+....-|.-+- |++-.
T Consensus 69 ~~s~~~~llAv~~~~-K~~~~f~~~~~~~~~kl~~~~~v~~-------------~~~ai~~~~~~~sv~v~dka-gD~~~ 133 (390)
T KOG3914|consen 69 LTSDSGRLVAVATSS-KQRAVFDYRENPKGAKLLDVSCVPK-------------RPTAISFIREDTSVLVADKA-GDVYS 133 (390)
T ss_pred ccCCCceEEEEEeCC-CceEEEEEecCCCcceeeeEeeccc-------------CcceeeeeeccceEEEEeec-CCcee
Confidence 578999999988753 334444443222 355556555442 23677777788888777764 44455
Q ss_pred EEecC-C-CCCeE-EEEEEecceeecCCceeeeeCCCCCCCCCCccccCcccCCCCeeEEECCCCCEEEEEe
Q 027522 85 YNIED-P-KNPVL-TGQIWVGGLFRKGSPVVAVTDDGQPYQSDVPEVQGHRLRGGPQMIQLSLDGKRLYVTN 153 (222)
Q Consensus 85 f~i~d-~-~~~~L-~~~v~~gG~~~~~~~~~~~~~~~~~~~p~~~~v~G~~~~ggPr~~~lspdGk~LyvaN 153 (222)
|+|-. + +.+.+ .|.++. --++++|||+++++-|.
T Consensus 134 ~di~s~~~~~~~~~lGhvSm-----------------------------------l~dVavS~D~~~IitaD 170 (390)
T KOG3914|consen 134 FDILSADSGRCEPILGHVSM-----------------------------------LLDVAVSPDDQFIITAD 170 (390)
T ss_pred eeeecccccCcchhhhhhhh-----------------------------------hheeeecCCCCEEEEec
Confidence 56532 2 22222 122222 33689999999998887
No 225
>KOG0322 consensus G-protein beta subunit-like protein GNB1L, contains WD repeats [General function prediction only]
Probab=63.01 E-value=20 Score=33.53 Aligned_cols=52 Identities=27% Similarity=0.419 Sum_probs=35.2
Q ss_pred EEEEEeC-CCCCeeEEEEEEecCcccccccCCCCCCceeEEEEcCCCCEEEEEeCCCCcEEEEEec
Q 027522 24 MVRFSKT-QDGSWNHEVAISVKSLKVQNWILPEMPGLITDFLISLDDRFLYFSNWLHGDIRQYNIE 88 (222)
Q Consensus 24 V~~~~~d-~~g~~~~~q~is~~p~~~~g~~~~~~~~~~adI~iSpDgrfLYvSnRgh~sI~vf~i~ 88 (222)
+..|.++ ..|.++....+.+.. ...+.++|-||+|-|-.+.|.| .|+||.-.
T Consensus 229 l~~~Sl~~s~gslq~~~e~~lkn------------pGv~gvrIRpD~KIlATAGWD~-RiRVyswr 281 (323)
T KOG0322|consen 229 LVMYSLNHSTGSLQIRKEITLKN------------PGVSGVRIRPDGKILATAGWDH-RIRVYSWR 281 (323)
T ss_pred ceeeeeccccCcccccceEEecC------------CCccceEEccCCcEEeecccCC-cEEEEEec
Confidence 4444443 235555555555542 2347899999999999999865 79999884
No 226
>KOG4547 consensus WD40 repeat-containing protein [General function prediction only]
Probab=62.52 E-value=1.4e+02 Score=30.15 Aligned_cols=29 Identities=28% Similarity=0.450 Sum_probs=24.8
Q ss_pred CceeEEEEcCCCCEEEEEeCCCCcEEEEEecC
Q 027522 58 GLITDFLISLDDRFLYFSNWLHGDIRQYNIED 89 (222)
Q Consensus 58 ~~~adI~iSpDgrfLYvSnRgh~sI~vf~i~d 89 (222)
...+-|.+||||+.|-++. .+|-+|+|..
T Consensus 145 ~~~~sl~is~D~~~l~~as---~~ik~~~~~~ 173 (541)
T KOG4547|consen 145 PLVSSLCISPDGKILLTAS---RQIKVLDIET 173 (541)
T ss_pred CccceEEEcCCCCEEEecc---ceEEEEEccC
Confidence 5679999999999998875 5899999954
No 227
>KOG0295 consensus WD40 repeat-containing protein [Function unknown]
Probab=62.11 E-value=12 Score=36.17 Aligned_cols=31 Identities=10% Similarity=0.280 Sum_probs=27.5
Q ss_pred CceeEEEEcCCCCEEEEEeCCCCcEEEEEecC
Q 027522 58 GLITDFLISLDDRFLYFSNWLHGDIRQYNIED 89 (222)
Q Consensus 58 ~~~adI~iSpDgrfLYvSnRgh~sI~vf~i~d 89 (222)
+...+++|||-|||| +|+-...++++|++..
T Consensus 335 nwVr~~af~p~Gkyi-~ScaDDktlrvwdl~~ 365 (406)
T KOG0295|consen 335 NWVRGVAFSPGGKYI-LSCADDKTLRVWDLKN 365 (406)
T ss_pred ceeeeeEEcCCCeEE-EEEecCCcEEEEEecc
Confidence 567999999999999 7888899999999954
No 228
>COG5354 Uncharacterized protein, contains Trp-Asp (WD) repeat [General function prediction only]
Probab=61.06 E-value=37 Score=34.07 Aligned_cols=70 Identities=13% Similarity=0.121 Sum_probs=49.4
Q ss_pred eEEEcCCCCeEEE--EeccCceEEEEEeCCCCCeeEEEEEEecCcccccccCCCCCCceeEEEEcCCCCEEEEEe-----
Q 027522 4 RFLHDPSKDIGFV--GCALASTMVRFSKTQDGSWNHEVAISVKSLKVQNWILPEMPGLITDFLISLDDRFLYFSN----- 76 (222)
Q Consensus 4 r~afhP~g~~aYv--v~ELsstV~~~~~d~~g~~~~~q~is~~p~~~~g~~~~~~~~~~adI~iSpDgrfLYvSn----- 76 (222)
++.|+|.++|+-+ ..-|...|-.|+. .|++..... + .+ ..++=+.-||||.|+|++-
T Consensus 320 T~~fsp~~r~il~agF~nl~gni~i~~~--~~rf~~~~~--~-----~~-------~n~s~~~wspd~qF~~~~~ts~k~ 383 (561)
T COG5354 320 TIFFSPHERYILFAGFDNLQGNIEIFDP--AGRFKVAGA--F-----NG-------LNTSYCDWSPDGQFYDTDTTSEKL 383 (561)
T ss_pred cccccCcccEEEEecCCccccceEEecc--CCceEEEEE--e-----ec-------CCceEeeccCCceEEEecCCCccc
Confidence 5689999999877 5567777888764 355532221 1 11 2236678899999999875
Q ss_pred CCCCcEEEEEecC
Q 027522 77 WLHGDIRQYNIED 89 (222)
Q Consensus 77 Rgh~sI~vf~i~d 89 (222)
|-+++|.+|+|..
T Consensus 384 ~~Dn~i~l~~v~g 396 (561)
T COG5354 384 RVDNSIKLWDVYG 396 (561)
T ss_pred ccCcceEEEEecC
Confidence 4678999999964
No 229
>PF03022 MRJP: Major royal jelly protein; InterPro: IPR003534 The major royal jelly proteins (MRJPs) comprise 12.5% of the mass, and 82-90% of the protein content [], of honeybee (Apis mellifera) royal jelly. Royal jelly is a substance secreted by the cephalic glands of nurse bees [] and it is used to trigger development of a queen bee from a bee larva. The biological function of the MRJPs is unknown, but they are believed to play a major role in nutrition due to their high essential amino acid content []. Two royal jelly proteins, MRJP3 and MRJP5, contain a tandem repeat that results from a high genetic variablility. This polymorphism may be useful for genotyping individual bees [].; PDB: 3Q6P_B 3Q6K_A 3Q6T_A 2QE8_B.
Probab=59.73 E-value=66 Score=29.11 Aligned_cols=66 Identities=18% Similarity=0.271 Sum_probs=40.2
Q ss_pred ceeEEEEcCCCCEEEEEeCCCCcEEEEEecCCCCCeEEEEEEecceeecCCceeeeeCCC-CCCCCCCccccCcccCCCC
Q 027522 59 LITDFLISLDDRFLYFSNWLHGDIRQYNIEDPKNPVLTGQIWVGGLFRKGSPVVAVTDDG-QPYQSDVPEVQGHRLRGGP 137 (222)
Q Consensus 59 ~~adI~iSpDgrfLYvSnRgh~sI~vf~i~d~~~~~L~~~v~~gG~~~~~~~~~~~~~~~-~~~~p~~~~v~G~~~~ggP 137 (222)
....+.+++ .--||.+.-.+++|..|+...+.++.-... +.+|.+ +.+ |
T Consensus 187 ~s~g~~~D~-~G~ly~~~~~~~aI~~w~~~~~~~~~~~~~--------------l~~d~~~l~~---------------p 236 (287)
T PF03022_consen 187 QSDGMAIDP-NGNLYFTDVEQNAIGCWDPDGPYTPENFEI--------------LAQDPRTLQW---------------P 236 (287)
T ss_dssp SECEEEEET-TTEEEEEECCCTEEEEEETTTSB-GCCEEE--------------EEE-CC-GSS---------------E
T ss_pred CCceEEECC-CCcEEEecCCCCeEEEEeCCCCcCccchhe--------------eEEcCceeec---------------c
Confidence 456788888 557899999999999998754332211111 122222 333 8
Q ss_pred eeEEECC--CCCEEEEEeC
Q 027522 138 QMIQLSL--DGKRLYVTNS 154 (222)
Q Consensus 138 r~~~lsp--dGk~LyvaNs 154 (222)
-.|.+++ +|..-+.+|.
T Consensus 237 d~~~i~~~~~g~L~v~snr 255 (287)
T PF03022_consen 237 DGLKIDPEGDGYLWVLSNR 255 (287)
T ss_dssp EEEEE-T--TS-EEEEE-S
T ss_pred ceeeeccccCceEEEEECc
Confidence 9999999 8865555663
No 230
>KOG0646 consensus WD40 repeat protein [General function prediction only]
Probab=58.96 E-value=47 Score=32.88 Aligned_cols=79 Identities=16% Similarity=0.171 Sum_probs=48.9
Q ss_pred EEEcCCCCeEEEEeccCceEEEEEeC-CCCCee-E-EEEEEecCc---ccccccCCCCCCceeEEEEcCCCCEEEEEeCC
Q 027522 5 FLHDPSKDIGFVGCALASTMVRFSKT-QDGSWN-H-EVAISVKSL---KVQNWILPEMPGLITDFLISLDDRFLYFSNWL 78 (222)
Q Consensus 5 ~afhP~g~~aYvv~ELsstV~~~~~d-~~g~~~-~-~q~is~~p~---~~~g~~~~~~~~~~adI~iSpDgrfLYvSnRg 78 (222)
++.+|-.+.+|+.+| .+.|+...+. ..|.-. . ++....-.. .+.|.. -...++-+.||.||..| +|.--
T Consensus 223 v~lDpae~~~yiGt~-~G~I~~~~~~~~~~~~~~v~~k~~~~~~t~~~~~~Gh~---~~~~ITcLais~DgtlL-lSGd~ 297 (476)
T KOG0646|consen 223 VALDPAERVVYIGTE-EGKIFQNLLFKLSGQSAGVNQKGRHEENTQINVLVGHE---NESAITCLAISTDGTLL-LSGDE 297 (476)
T ss_pred EEEcccccEEEecCC-cceEEeeehhcCCcccccccccccccccceeeeecccc---CCcceeEEEEecCccEE-EeeCC
Confidence 467899999999999 5677777553 111100 0 011000000 011211 11367899999999988 78878
Q ss_pred CCcEEEEEec
Q 027522 79 HGDIRQYNIE 88 (222)
Q Consensus 79 h~sI~vf~i~ 88 (222)
+|.+.+|+|.
T Consensus 298 dg~VcvWdi~ 307 (476)
T KOG0646|consen 298 DGKVCVWDIY 307 (476)
T ss_pred CCCEEEEecc
Confidence 8999999984
No 231
>PF08553 VID27: VID27 cytoplasmic protein; InterPro: IPR013863 This entry represents fungal and plant proteins and contains many hypothetical proteins. Vid27p is a cytoplasmic protein of unknown function, possibly regulates import of fructose-1,6-bisphosphatase into Vacuolar Import and Degradation (Vid) vesicles and is not essential for proteasome-dependent degradation of fructose-1,6-bisphosphatase (FBPase) [, ].
Probab=58.86 E-value=38 Score=35.56 Aligned_cols=57 Identities=26% Similarity=0.254 Sum_probs=40.0
Q ss_pred eEEEEcCCCCEEEEEeCCCCcEEEEEecCCCCCeEEEEEEecceeecCCceeeeeCCCCCCCCCCccccCcccCCCCeeE
Q 027522 61 TDFLISLDDRFLYFSNWLHGDIRQYNIEDPKNPVLTGQIWVGGLFRKGSPVVAVTDDGQPYQSDVPEVQGHRLRGGPQMI 140 (222)
Q Consensus 61 adI~iSpDgrfLYvSnRgh~sI~vf~i~d~~~~~L~~~v~~gG~~~~~~~~~~~~~~~~~~~p~~~~v~G~~~~ggPr~~ 140 (222)
+.++-+.+|..+-.|+ .|+|+.|+-. ++- .+... |. -|.. =..+
T Consensus 581 s~~aTt~~G~iavgs~--~G~IRLyd~~----g~~-AKT~l---------------------p~----lG~p----I~~i 624 (794)
T PF08553_consen 581 SCFATTEDGYIAVGSN--KGDIRLYDRL----GKR-AKTAL---------------------PG----LGDP----IIGI 624 (794)
T ss_pred eEEEecCCceEEEEeC--CCcEEeeccc----chh-hhhcC---------------------CC----CCCC----eeEE
Confidence 6778899999998887 6889999631 111 11121 11 1443 3789
Q ss_pred EECCCCCEEEEEe
Q 027522 141 QLSLDGKRLYVTN 153 (222)
Q Consensus 141 ~lspdGk~LyvaN 153 (222)
..|.|||||++|+
T Consensus 625 Dvt~DGkwilaTc 637 (794)
T PF08553_consen 625 DVTADGKWILATC 637 (794)
T ss_pred EecCCCcEEEEee
Confidence 9999999999999
No 232
>PF02897 Peptidase_S9_N: Prolyl oligopeptidase, N-terminal beta-propeller domain; InterPro: IPR004106 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This entry represents the beta-propeller domain found at the N-terminal of prolyl oligopeptidase, including acylamino-acid-releasing enzyme (also known as acylaminoacyl peptidase), which belong to the MEROPS peptidase family S9 (clan SC), subfamily S9A. The prolyl oligopeptidase family consist of a number of evolutionary related peptidases whose catalytic activity seems to be provided by a charge relay system similar to that of the trypsin family of serine proteases, but which evolved by independent convergent evolution. The N-terminal domain of prolyl oligopeptidases form an unusual 7-bladed beta-propeller consisting of seven 4-stranded beta-sheet motifs. Prolyl oligopeptidase is a large cytosolic enzyme involved in the maturation and degradation of peptide hormones and neuropeptides, which relate to the induction of amnesia. The enzyme contains a peptidase domain, where its catalytic triad (Ser554, His680, Asp641) is covered by the central tunnel of the N-terminal beta-propeller domain. In this way, large structured peptides are excluded from the active site, thereby protecting larger peptides and proteins from proteolysis in the cytosol []. The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. Mammalian acylaminoacyl peptidase is an exopeptidase that is a member of the same prolyl oligopeptidase family of serine peptidases. This enzyme removes acylated amino acid residues from the N terminus of oligopeptides [].; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 2BKL_B 3DDU_A 1YR2_A 2XE4_A 1VZ3_A 3EQ9_A 1O6F_A 3EQ7_A 4AN0_A 1UOP_A ....
Probab=58.55 E-value=1.5e+02 Score=27.20 Aligned_cols=60 Identities=12% Similarity=0.160 Sum_probs=35.0
Q ss_pred eEEEcCCCC-eEEEEeccCceEEEEEe-C-CCCCeeEEEEEEecCcccccccCCCCCCceeEEEEcCCCCEEEEEeCC
Q 027522 4 RFLHDPSKD-IGFVGCALASTMVRFSK-T-QDGSWNHEVAISVKSLKVQNWILPEMPGLITDFLISLDDRFLYFSNWL 78 (222)
Q Consensus 4 r~afhP~g~-~aYvv~ELsstV~~~~~-d-~~g~~~~~q~is~~p~~~~g~~~~~~~~~~adI~iSpDgrfLYvSnRg 78 (222)
.+.++|+|+ .||.+..-++....++. | ++|+.- ...+.-. . .+-|.-++||+-||.+...
T Consensus 128 ~~~~Spdg~~la~~~s~~G~e~~~l~v~Dl~tg~~l-~d~i~~~-------------~-~~~~~W~~d~~~~~y~~~~ 190 (414)
T PF02897_consen 128 GFSVSPDGKRLAYSLSDGGSEWYTLRVFDLETGKFL-PDGIENP-------------K-FSSVSWSDDGKGFFYTRFD 190 (414)
T ss_dssp EEEETTTSSEEEEEEEETTSSEEEEEEEETTTTEEE-EEEEEEE-------------E-SEEEEECTTSSEEEEEECS
T ss_pred eeeECCCCCEEEEEecCCCCceEEEEEEECCCCcCc-CCccccc-------------c-cceEEEeCCCCEEEEEEeC
Confidence 478899987 67777887776555432 4 455322 1122111 1 1228999998877665543
No 233
>KOG0273 consensus Beta-transducin family (WD-40 repeat) protein [Chromatin structure and dynamics]
Probab=57.54 E-value=1.9e+02 Score=28.96 Aligned_cols=95 Identities=17% Similarity=0.184 Sum_probs=56.0
Q ss_pred cCCCCeEEEEeccCceEEEEEeCCCCCeeEEEEEEecCcccccccCCCCCCceeEEEEcCCCCEEEEEeCCCCcEEEEEe
Q 027522 8 DPSKDIGFVGCALASTMVRFSKTQDGSWNHEVAISVKSLKVQNWILPEMPGLITDFLISLDDRFLYFSNWLHGDIRQYNI 87 (222)
Q Consensus 8 hP~g~~aYvv~ELsstV~~~~~d~~g~~~~~q~is~~p~~~~g~~~~~~~~~~adI~iSpDgrfLYvSnRgh~sI~vf~i 87 (222)
||+-...-+-+-.+|+|-.|.-. .|.- +.++-+. . .-.+++..|||||+| +|.-..+.|-.|.+
T Consensus 418 n~~~~~~l~sas~dstV~lwdv~-~gv~-----i~~f~kH---~------~pVysvafS~~g~yl-AsGs~dg~V~iws~ 481 (524)
T KOG0273|consen 418 NPNMNLMLASASFDSTVKLWDVE-SGVP-----IHTLMKH---Q------EPVYSVAFSPNGRYL-ASGSLDGCVHIWST 481 (524)
T ss_pred CCcCCceEEEeecCCeEEEEEcc-CCce-----eEeeccC---C------CceEEEEecCCCcEE-EecCCCCeeEeccc
Confidence 34444455555566777766542 2321 1222111 1 235899999999999 55556788999977
Q ss_pred cCCCCCeEEEEEEecceeecCCceeeeeCCCCCCCCCCccccCcccCCCCeeEEECCCCCEEEEEe
Q 027522 88 EDPKNPVLTGQIWVGGLFRKGSPVVAVTDDGQPYQSDVPEVQGHRLRGGPQMIQLSLDGKRLYVTN 153 (222)
Q Consensus 88 ~d~~~~~L~~~v~~gG~~~~~~~~~~~~~~~~~~~p~~~~v~G~~~~ggPr~~~lspdGk~LyvaN 153 (222)
. .++|+....-.| +--.+..+-+|..|-++=
T Consensus 482 ~---~~~l~~s~~~~~--------------------------------~Ifel~Wn~~G~kl~~~~ 512 (524)
T KOG0273|consen 482 K---TGKLVKSYQGTG--------------------------------GIFELCWNAAGDKLGACA 512 (524)
T ss_pred c---chheeEeecCCC--------------------------------eEEEEEEcCCCCEEEEEe
Confidence 3 356643322111 123678899998877775
No 234
>KOG0288 consensus WD40 repeat protein TipD [General function prediction only]
Probab=57.27 E-value=27 Score=34.20 Aligned_cols=61 Identities=11% Similarity=0.146 Sum_probs=40.8
Q ss_pred eeEEEEcCCCCEEEEEeCCCCcEEEEEecCCCCCeEEEEEEecceeecCCceeeeeCCCCCCCCCCccccCcccCCCCee
Q 027522 60 ITDFLISLDDRFLYFSNWLHGDIRQYNIEDPKNPVLTGQIWVGGLFRKGSPVVAVTDDGQPYQSDVPEVQGHRLRGGPQM 139 (222)
Q Consensus 60 ~adI~iSpDgrfLYvSnRgh~sI~vf~i~d~~~~~L~~~v~~gG~~~~~~~~~~~~~~~~~~~p~~~~v~G~~~~ggPr~ 139 (222)
-+...+|||++|+-+ .-..++|-+|++. ++|+...+..-+ .. .+--.
T Consensus 390 wtrvvfSpd~~YvaA-GS~dgsv~iW~v~---tgKlE~~l~~s~---------------------------s~--~aI~s 436 (459)
T KOG0288|consen 390 WTRVVFSPDGSYVAA-GSADGSVYIWSVF---TGKLEKVLSLST---------------------------SN--AAITS 436 (459)
T ss_pred cceeEECCCCceeee-ccCCCcEEEEEcc---CceEEEEeccCC---------------------------CC--cceEE
Confidence 378899999999954 4468999999984 366643333311 11 00124
Q ss_pred EEECCCCCEEEEEe
Q 027522 140 IQLSLDGKRLYVTN 153 (222)
Q Consensus 140 ~~lspdGk~LyvaN 153 (222)
+..+|.|+.|+.|.
T Consensus 437 ~~W~~sG~~Llsad 450 (459)
T KOG0288|consen 437 LSWNPSGSGLLSAD 450 (459)
T ss_pred EEEcCCCchhhccc
Confidence 56788999999885
No 235
>KOG1034 consensus Transcriptional repressor EED/ESC/FIE, required for transcriptional silencing, WD repeat superfamily [Transcription]
Probab=56.79 E-value=34 Score=32.82 Aligned_cols=67 Identities=15% Similarity=0.237 Sum_probs=43.2
Q ss_pred cCCCCEEEEEeCCCCcEEEEEecCCCCCeEEEEEEecceeecCCceeeeeCCCCCCCCCCccccCcccCCCCeeEEECCC
Q 027522 66 SLDDRFLYFSNWLHGDIRQYNIEDPKNPVLTGQIWVGGLFRKGSPVVAVTDDGQPYQSDVPEVQGHRLRGGPQMIQLSLD 145 (222)
Q Consensus 66 SpDgrfLYvSnRgh~sI~vf~i~d~~~~~L~~~v~~gG~~~~~~~~~~~~~~~~~~~p~~~~v~G~~~~ggPr~~~lspd 145 (222)
.|=+|.|-.-| -.++|-+|+++..+.++- .++. .+..|+. -|.+++|.|
T Consensus 316 d~~~~~la~gn-q~g~v~vwdL~~~ep~~~-ttl~-------------------------~s~~~~t----VRQ~sfS~d 364 (385)
T KOG1034|consen 316 DPWQKMLALGN-QSGKVYVWDLDNNEPPKC-TTLT-------------------------HSKSGST----VRQTSFSRD 364 (385)
T ss_pred cHHHHHHhhcc-CCCcEEEEECCCCCCccC-ceEE-------------------------eccccce----eeeeeeccc
Confidence 33455564444 467899999954332221 1111 1124666 899999999
Q ss_pred CCEEEEEeCCCCccccccccccccCCcEEEEEEe
Q 027522 146 GKRLYVTNSLFSAWDCQFYPELKEKGSHMLQIDV 179 (222)
Q Consensus 146 Gk~LyvaNsl~~~wd~Q~yp~~~s~~~~i~~~dv 179 (222)
|..|+..| +..+|.|+|+
T Consensus 365 gs~lv~vc----------------dd~~Vwrwdr 382 (385)
T KOG1034|consen 365 GSILVLVC----------------DDGTVWRWDR 382 (385)
T ss_pred CcEEEEEe----------------CCCcEEEEEe
Confidence 99999888 4677888865
No 236
>KOG2106 consensus Uncharacterized conserved protein, contains HELP and WD40 domains [Function unknown]
Probab=55.69 E-value=97 Score=31.42 Aligned_cols=65 Identities=22% Similarity=0.170 Sum_probs=46.1
Q ss_pred EEEcCCCCeEEEEeccCceEEEEEeCCCCCeeEE-EEEEecCcccccccCCCCCCceeEEEEcCCCCEEEEEeCCCCcEE
Q 027522 5 FLHDPSKDIGFVGCALASTMVRFSKTQDGSWNHE-VAISVKSLKVQNWILPEMPGLITDFLISLDDRFLYFSNWLHGDIR 83 (222)
Q Consensus 5 ~afhP~g~~aYvv~ELsstV~~~~~d~~g~~~~~-q~is~~p~~~~g~~~~~~~~~~adI~iSpDgrfLYvSnRgh~sI~ 83 (222)
..|+|+|.+.-|..- ++.|..|.-+++|..-.+ ...+ | +.++.+--|+|++|| ++|-+.=+|-
T Consensus 453 v~ysp~G~~lAvgs~-d~~iyiy~Vs~~g~~y~r~~k~~-------g-------s~ithLDwS~Ds~~~-~~~S~d~eiL 516 (626)
T KOG2106|consen 453 VRYSPDGAFLAVGSH-DNHIYIYRVSANGRKYSRVGKCS-------G-------SPITHLDWSSDSQFL-VSNSGDYEIL 516 (626)
T ss_pred EEEcCCCCEEEEecC-CCeEEEEEECCCCcEEEEeeeec-------C-------ceeEEeeecCCCceE-EeccCceEEE
Confidence 468888888777664 777888877766543222 1112 1 346899999999999 8888888888
Q ss_pred EE
Q 027522 84 QY 85 (222)
Q Consensus 84 vf 85 (222)
-|
T Consensus 517 yW 518 (626)
T KOG2106|consen 517 YW 518 (626)
T ss_pred EE
Confidence 88
No 237
>PRK11138 outer membrane biogenesis protein BamB; Provisional
Probab=55.28 E-value=1.4e+02 Score=27.50 Aligned_cols=19 Identities=11% Similarity=0.368 Sum_probs=13.3
Q ss_pred CCCEEEEEeCCCCcEEEEEe
Q 027522 68 DDRFLYFSNWLHGDIRQYNI 87 (222)
Q Consensus 68 DgrfLYvSnRgh~sI~vf~i 87 (222)
.|..||++++ .+.+..+++
T Consensus 255 ~~~~vy~~~~-~g~l~ald~ 273 (394)
T PRK11138 255 VGGVVYALAY-NGNLVALDL 273 (394)
T ss_pred ECCEEEEEEc-CCeEEEEEC
Confidence 4678998886 356666665
No 238
>cd04480 RPA1_DBD_A_like RPA1_DBD_A_like: A subgroup of uncharacterized plant OB folds with similarity to the second OB fold, the ssDNA-binding domain (DBD)-A, of human RPA1 (also called RPA70). RPA1 is the large subunit of Replication protein A (RPA). RPA is a nuclear ssDNA-binding protein (SSB) which appears to be involved in all aspects of DNA metabolism including replication, recombination, and repair. RPA also mediates specific interactions of various nuclear proteins. In animals, plants, and fungi, RPA is a heterotrimer with subunits of 70KDa (RPA1), 32kDa (RPA2), and 14 KDa (RPA3). In addition to DBD-A, RPA1 contains three other OB folds: DBD-B, DBD-C, and RPA1N. The major DNA binding activity of RPA is associated with DBD-A and DBD-B of RPA1. RPA1 DBD-C is involved in trimerization. The ssDNA-binding mechanism is believed to be multistep and to involve conformational change.
Probab=55.10 E-value=57 Score=23.75 Aligned_cols=64 Identities=20% Similarity=0.326 Sum_probs=47.2
Q ss_pred cCcccCCCCeeEEECCCCCEEEEEeCCCCccccccccccccCCcEEEE-EEeeCCCCCee-eccceeEecCC
Q 027522 129 QGHRLRGGPQMIQLSLDGKRLYVTNSLFSAWDCQFYPELKEKGSHMLQ-IDVNSEKGGMA-INPNFFVDFEA 198 (222)
Q Consensus 129 ~G~~~~ggPr~~~lspdGk~LyvaNsl~~~wd~Q~yp~~~s~~~~i~~-~dvd~~~G~l~-~~~~f~vdf~~ 198 (222)
.|.. ..|+-++-.|..+.++- ++.+-+.++|.+.+++.-.+. +.+-+.++... ...+|.+-|..
T Consensus 17 ~~~~----~~miL~De~G~~I~a~i--~~~~~~~f~~~L~eg~vy~is~f~v~~~~~~y~~~~~~y~I~f~~ 82 (86)
T cd04480 17 SGES----LEMVLVDEKGNRIHATI--PKRLAAKFRPLLKEGKWYTISNFEVAPNTGSYRPTDHPYKIKFMS 82 (86)
T ss_pred CCcE----EEEEEEcCCCCEEEEEE--CHHHHHhhhhhceeCCEEEEeeEEEEcCCCcccccCCcEEEEeec
Confidence 4565 77889999999998874 555666777777777655554 77888887775 66678888864
No 239
>PF08954 DUF1900: Domain of unknown function (DUF1900); InterPro: IPR015049 This domain is predominantly found in the structural protein coronin, and is duplicated in some sequences. It has no known function []. ; PDB: 2B4E_A 2AQ5_A.
Probab=53.96 E-value=27 Score=28.71 Aligned_cols=33 Identities=30% Similarity=0.527 Sum_probs=23.5
Q ss_pred EEEEcCCCCEEEEEeCCCCcEEEEEecCCCCCeE
Q 027522 62 DFLISLDDRFLYFSNWLHGDIRQYNIEDPKNPVL 95 (222)
Q Consensus 62 dI~iSpDgrfLYvSnRgh~sI~vf~i~d~~~~~L 95 (222)
-....+|-.-||++.||+++|+.|.+.+ +.|.+
T Consensus 15 ~P~yD~dt~llyl~gKGD~~ir~yEv~~-~~p~l 47 (136)
T PF08954_consen 15 MPFYDEDTNLLYLAGKGDGNIRYYEVSD-ESPYL 47 (136)
T ss_dssp EEEE-TTT-EEEEEETT-S-EEEEEE-S-STTSE
T ss_pred EeeEcCCCCEEEEEeccCcEEEEEEEcC-CCCce
Confidence 4467889999999999999999999965 55666
No 240
>KOG0649 consensus WD40 repeat protein [General function prediction only]
Probab=53.13 E-value=1e+02 Score=28.75 Aligned_cols=74 Identities=22% Similarity=0.183 Sum_probs=40.0
Q ss_pred eEEEcCCCCeEEEEeccCceEEEEEeCCC--CCeeEEEEEEecCcccccccCCCCCCceeEEEEcCCCCEEEEEeCCCCc
Q 027522 4 RFLHDPSKDIGFVGCALASTMVRFSKTQD--GSWNHEVAISVKSLKVQNWILPEMPGLITDFLISLDDRFLYFSNWLHGD 81 (222)
Q Consensus 4 r~afhP~g~~aYvv~ELsstV~~~~~d~~--g~~~~~q~is~~p~~~~g~~~~~~~~~~adI~iSpDgrfLYvSnRgh~s 81 (222)
|-+.+|.+++.++.| +..+|+++....- ++-+......+.|+ .+.. .-+.+++.. ++||..+ |.|.
T Consensus 15 ~qa~sp~~~~l~agn-~~G~iav~sl~sl~s~sa~~~gk~~iv~e--qahd-----gpiy~~~f~--d~~Lls~--gdG~ 82 (325)
T KOG0649|consen 15 AQAISPSKQYLFAGN-LFGDIAVLSLKSLDSGSAEPPGKLKIVPE--QAHD-----GPIYYLAFH--DDFLLSG--GDGL 82 (325)
T ss_pred HHhhCCcceEEEEec-CCCeEEEEEehhhhccccCCCCCcceeec--cccC-----CCeeeeeee--hhheeec--cCce
Confidence 346789999977776 5788998876421 11111111111111 1111 124566665 7777665 4588
Q ss_pred EEEEEecC
Q 027522 82 IRQYNIED 89 (222)
Q Consensus 82 I~vf~i~d 89 (222)
|.-|.-..
T Consensus 83 V~gw~W~E 90 (325)
T KOG0649|consen 83 VYGWEWNE 90 (325)
T ss_pred EEEeeehh
Confidence 88887743
No 241
>COG4257 Vgb Streptogramin lyase [Defense mechanisms]
Probab=52.75 E-value=82 Score=29.86 Aligned_cols=75 Identities=19% Similarity=0.283 Sum_probs=51.7
Q ss_pred ceeEEEEcCCCCEEEEEeCCCCcEEEEEecCCCCCeEEEEEEecceeecCCceeeeeCCCCCCCCCCccccCcccCCCCe
Q 027522 59 LITDFLISLDDRFLYFSNWLHGDIRQYNIEDPKNPVLTGQIWVGGLFRKGSPVVAVTDDGQPYQSDVPEVQGHRLRGGPQ 138 (222)
Q Consensus 59 ~~adI~iSpDgrfLYvSnRgh~sI~vf~i~d~~~~~L~~~v~~gG~~~~~~~~~~~~~~~~~~~p~~~~v~G~~~~ggPr 138 (222)
.+.++..+|||---|...+ .+.|-.. ||.+++. .++.+| .|.+ |+
T Consensus 63 ap~dvapapdG~VWft~qg-~gaiGhL---dP~tGev-~~ypLg--------------------------~Ga~----Ph 107 (353)
T COG4257 63 APFDVAPAPDGAVWFTAQG-TGAIGHL---DPATGEV-ETYPLG--------------------------SGAS----PH 107 (353)
T ss_pred CccccccCCCCceEEecCc-cccceec---CCCCCce-EEEecC--------------------------CCCC----Cc
Confidence 3579999999987777665 4466654 5666643 345553 2777 99
Q ss_pred eEEECCCCCEEEEEeCCCCccccccccccccCCcEEEEEEeeCCCCCee
Q 027522 139 MIQLSLDGKRLYVTNSLFSAWDCQFYPELKEKGSHMLQIDVNSEKGGMA 187 (222)
Q Consensus 139 ~~~lspdGk~LyvaNsl~~~wd~Q~yp~~~s~~~~i~~~dvd~~~G~l~ 187 (222)
-+++.|||. +.++. + +..|.|+ |++|++.+
T Consensus 108 giv~gpdg~-~Witd---------------~-~~aI~R~--dpkt~evt 137 (353)
T COG4257 108 GIVVGPDGS-AWITD---------------T-GLAIGRL--DPKTLEVT 137 (353)
T ss_pred eEEECCCCC-eeEec---------------C-cceeEEe--cCcccceE
Confidence 999999997 66665 1 2377777 66777764
No 242
>KOG0643 consensus Translation initiation factor 3, subunit i (eIF-3i)/TGF-beta receptor-interacting protein (TRIP-1) [Translation, ribosomal structure and biogenesis; Signal transduction mechanisms]
Probab=52.53 E-value=2.1e+02 Score=27.02 Aligned_cols=96 Identities=15% Similarity=0.171 Sum_probs=64.3
Q ss_pred EEcCCCCeEEEEeccCceEEEEEeCCCCCeeEEEEEEecCcccccccCCCCCCceeEEEEcCCCCEEEEEeCCCCcEEEE
Q 027522 6 LHDPSKDIGFVGCALASTMVRFSKTQDGSWNHEVAISVKSLKVQNWILPEMPGLITDFLISLDDRFLYFSNWLHGDIRQY 85 (222)
Q Consensus 6 afhP~g~~aYvv~ELsstV~~~~~d~~g~~~~~q~is~~p~~~~g~~~~~~~~~~adI~iSpDgrfLYvSnRgh~sI~vf 85 (222)
-|+-+|..+|. |.-++++.+|+-. +|+- +- .+.|.. ...=-|.|+-|-+.| ++.-.+.++..|
T Consensus 17 KyN~eGDLlFs-caKD~~~~vw~s~-nGer--lG-------ty~GHt-----GavW~~Did~~s~~l-iTGSAD~t~kLW 79 (327)
T KOG0643|consen 17 KYNREGDLLFS-CAKDSTPTVWYSL-NGER--LG-------TYDGHT-----GAVWCCDIDWDSKHL-ITGSADQTAKLW 79 (327)
T ss_pred EecCCCcEEEE-ecCCCCceEEEec-CCce--ee-------eecCCC-----ceEEEEEecCCccee-eeccccceeEEE
Confidence 47788888885 5668888888652 3421 11 123321 223467788888887 666678999999
Q ss_pred EecCCCCCeEEEEEEecceeecCCceeeeeCCCCCCCCCCccccCcccCCCCeeEEECCCCCEEEEEe
Q 027522 86 NIEDPKNPVLTGQIWVGGLFRKGSPVVAVTDDGQPYQSDVPEVQGHRLRGGPQMIQLSLDGKRLYVTN 153 (222)
Q Consensus 86 ~i~d~~~~~L~~~v~~gG~~~~~~~~~~~~~~~~~~~p~~~~v~G~~~~ggPr~~~lspdGk~LyvaN 153 (222)
|+. +++.+.+..++ .. -|-..+|++|.+.+++.
T Consensus 80 Dv~---tGk~la~~k~~----------------------------~~----Vk~~~F~~~gn~~l~~t 112 (327)
T KOG0643|consen 80 DVE---TGKQLATWKTN----------------------------SP----VKRVDFSFGGNLILAST 112 (327)
T ss_pred EcC---CCcEEEEeecC----------------------------Ce----eEEEeeccCCcEEEEEe
Confidence 994 36666666652 12 46688999999888887
No 243
>KOG0650 consensus WD40 repeat nucleolar protein Bop1, involved in ribosome biogenesis [Translation, ribosomal structure and biogenesis]
Probab=51.66 E-value=86 Score=32.37 Aligned_cols=98 Identities=11% Similarity=0.169 Sum_probs=60.6
Q ss_pred EEEcCCCCeEEEEeccCceEEEE--EeCCCCCeeEEEEEEecCcccccccCCCCCCceeEEEEcCCCCEEEEEeCCCCcE
Q 027522 5 FLHDPSKDIGFVGCALASTMVRF--SKTQDGSWNHEVAISVKSLKVQNWILPEMPGLITDFLISLDDRFLYFSNWLHGDI 82 (222)
Q Consensus 5 ~afhP~g~~aYvv~ELsstV~~~--~~d~~g~~~~~q~is~~p~~~~g~~~~~~~~~~adI~iSpDgrfLYvSnRgh~sI 82 (222)
+.+|-.|.|+-+++.-+++=.++ ..... .+ ..|=..-. +.+-...++|---+|+|+.. .+|
T Consensus 527 vtWHrkGDYlatV~~~~~~~~VliHQLSK~------~s-Q~PF~ksk--------G~vq~v~FHPs~p~lfVaTq--~~v 589 (733)
T KOG0650|consen 527 VTWHRKGDYLATVMPDSGNKSVLIHQLSKR------KS-QSPFRKSK--------GLVQRVKFHPSKPYLFVATQ--RSV 589 (733)
T ss_pred eeeecCCceEEEeccCCCcceEEEEecccc------cc-cCchhhcC--------CceeEEEecCCCceEEEEec--cce
Confidence 46788999998888866553333 22111 11 11111112 44678899999999999984 679
Q ss_pred EEEEecCCCCCeEEEEEEecceeecCCceeeeeCCCCCCCCCCccccCcccCCCCeeEEECCCCCEEEEEe
Q 027522 83 RQYNIEDPKNPVLTGQIWVGGLFRKGSPVVAVTDDGQPYQSDVPEVQGHRLRGGPQMIQLSLDGKRLYVTN 153 (222)
Q Consensus 83 ~vf~i~d~~~~~L~~~v~~gG~~~~~~~~~~~~~~~~~~~p~~~~v~G~~~~ggPr~~~lspdGk~LyvaN 153 (222)
++|++.. ..|+-+.-+| -++ --.|+++|.|.-|++.|
T Consensus 590 RiYdL~k---qelvKkL~tg---------------------------~kw----iS~msihp~GDnli~gs 626 (733)
T KOG0650|consen 590 RIYDLSK---QELVKKLLTG---------------------------SKW----ISSMSIHPNGDNLILGS 626 (733)
T ss_pred EEEehhH---HHHHHHHhcC---------------------------Cee----eeeeeecCCCCeEEEec
Confidence 9999854 3343333332 122 44678888888888776
No 244
>PF12913 SH3_6: SH3 domain of the SH3b1 type; PDB: 3M1U_B.
Probab=51.30 E-value=15 Score=25.91 Aligned_cols=23 Identities=26% Similarity=0.611 Sum_probs=16.9
Q ss_pred eeEEECCCCCEEEEEeCCCCccc
Q 027522 138 QMIQLSLDGKRLYVTNSLFSAWD 160 (222)
Q Consensus 138 r~~~lspdGk~LyvaNsl~~~wd 160 (222)
.-...|.||+|+||-...|.-|=
T Consensus 30 ~i~H~S~D~~W~fV~t~~~~GWV 52 (54)
T PF12913_consen 30 YILHTSRDGAWAFVQTPFYSGWV 52 (54)
T ss_dssp EEEEE-TTSSEEEEE-SS-EEEE
T ss_pred EEEEECCCCCEEEEecCCeeEee
Confidence 56678999999999998888773
No 245
>KOG0321 consensus WD40 repeat-containing protein L2DTL [Function unknown]
Probab=50.85 E-value=86 Score=32.46 Aligned_cols=108 Identities=16% Similarity=0.116 Sum_probs=66.3
Q ss_pred eEeEEEcCCCCe-EEEEeccCceEEEEEeCCCCCeeEE-EEEEecCcccccccCCCCCCceeEEEEcCCCCEEEEEeCCC
Q 027522 2 QIRFLHDPSKDI-GFVGCALASTMVRFSKTQDGSWNHE-VAISVKSLKVQNWILPEMPGLITDFLISLDDRFLYFSNWLH 79 (222)
Q Consensus 2 evr~afhP~g~~-aYvv~ELsstV~~~~~d~~g~~~~~-q~is~~p~~~~g~~~~~~~~~~adI~iSpDgrfLYvSnRgh 79 (222)
..+|.=+|+.+| +|+.+| +..|..|.... -.+..+ +..--+++.+ +..-|+.==| |.-+.|+--|+
T Consensus 54 ~~sFs~~~n~eHiLavadE-~G~i~l~dt~~-~~fr~ee~~lk~~~aH~---------nAifDl~wap-ge~~lVsasGD 121 (720)
T KOG0321|consen 54 ADSFSAAPNKEHILAVADE-DGGIILFDTKS-IVFRLEERQLKKPLAHK---------NAIFDLKWAP-GESLLVSASGD 121 (720)
T ss_pred cccccCCCCccceEEEecC-CCceeeecchh-hhcchhhhhhccccccc---------ceeEeeccCC-CceeEEEccCC
Confidence 467777887655 566666 66677775421 122211 1112222221 3456677677 99999999999
Q ss_pred CcEEEEEecCCCCCeEEEEEEecceeecCCceeeeeCCCCCCCCCCccccCcccCCCCeeEEECCCCCEEEEEe
Q 027522 80 GDIRQYNIEDPKNPVLTGQIWVGGLFRKGSPVVAVTDDGQPYQSDVPEVQGHRLRGGPQMIQLSLDGKRLYVTN 153 (222)
Q Consensus 80 ~sI~vf~i~d~~~~~L~~~v~~gG~~~~~~~~~~~~~~~~~~~p~~~~v~G~~~~ggPr~~~lspdGk~LyvaN 153 (222)
-.|+.|++.. .+++|.-..-|.. |.-+.+++.|+..-+||+-
T Consensus 122 sT~r~Wdvk~---s~l~G~~~~~GH~-----------------------------~SvkS~cf~~~n~~vF~tG 163 (720)
T KOG0321|consen 122 STIRPWDVKT---SRLVGGRLNLGHT-----------------------------GSVKSECFMPTNPAVFCTG 163 (720)
T ss_pred ceeeeeeecc---ceeecceeecccc-----------------------------cccchhhhccCCCcceeec
Confidence 9999999953 4565432222221 1256789999999999887
No 246
>PF14870 PSII_BNR: Photosynthesis system II assembly factor YCF48; PDB: 2XBG_A.
Probab=49.52 E-value=1.2e+02 Score=28.05 Aligned_cols=22 Identities=32% Similarity=0.360 Sum_probs=13.5
Q ss_pred CceeEEEEcCCCCEEEEEeCCC
Q 027522 58 GLITDFLISLDDRFLYFSNWLH 79 (222)
Q Consensus 58 ~~~adI~iSpDgrfLYvSnRgh 79 (222)
+...++.-++||++|.||.||+
T Consensus 145 gs~~~~~r~~dG~~vavs~~G~ 166 (302)
T PF14870_consen 145 GSINDITRSSDGRYVAVSSRGN 166 (302)
T ss_dssp --EEEEEE-TTS-EEEEETTSS
T ss_pred ceeEeEEECCCCcEEEEECccc
Confidence 3356677788888888887765
No 247
>KOG0650 consensus WD40 repeat nucleolar protein Bop1, involved in ribosome biogenesis [Translation, ribosomal structure and biogenesis]
Probab=49.25 E-value=1.4e+02 Score=30.85 Aligned_cols=43 Identities=16% Similarity=0.237 Sum_probs=34.4
Q ss_pred CceeEEEEcCCCCEEEEEeCCCCcEEEEEecCCCCCeEEEEEEecce
Q 027522 58 GLITDFLISLDDRFLYFSNWLHGDIRQYNIEDPKNPVLTGQIWVGGL 104 (222)
Q Consensus 58 ~~~adI~iSpDgrfLYvSnRgh~sI~vf~i~d~~~~~L~~~v~~gG~ 104 (222)
.....|.++|-|.+| +|.+..|++++|.|. +++-+.++...+.
T Consensus 401 g~Vr~iSvdp~G~wl-asGsdDGtvriWEi~---TgRcvr~~~~d~~ 443 (733)
T KOG0650|consen 401 GLVRSISVDPSGEWL-ASGSDDGTVRIWEIA---TGRCVRTVQFDSE 443 (733)
T ss_pred CeEEEEEecCCccee-eecCCCCcEEEEEee---cceEEEEEeecce
Confidence 445788999999988 899999999999994 3666777777554
No 248
>KOG0296 consensus Angio-associated migratory cell protein (contains WD40 repeats) [Function unknown]
Probab=49.12 E-value=1.1e+02 Score=29.75 Aligned_cols=67 Identities=13% Similarity=0.189 Sum_probs=39.8
Q ss_pred EeEEEcCCCCeEEEEeccCceEEEEEeCCCCCeeEEEEEEecCcccccccCCCCCCceeEEEEcCCCCEEEEEeCCCCcE
Q 027522 3 IRFLHDPSKDIGFVGCALASTMVRFSKTQDGSWNHEVAISVKSLKVQNWILPEMPGLITDFLISLDDRFLYFSNWLHGDI 82 (222)
Q Consensus 3 vr~afhP~g~~aYvv~ELsstV~~~~~d~~g~~~~~q~is~~p~~~~g~~~~~~~~~~adI~iSpDgrfLYvSnRgh~sI 82 (222)
+|+.|-+ -+++|..|. +.+|..|.- ..|.+... +.|.+ ..+-++.+|||.|+| |+.-..+.-
T Consensus 331 ~~l~w~~-t~~l~t~c~-~g~v~~wDa-RtG~l~~~---------y~GH~-----~~Il~f~ls~~~~~v-vT~s~D~~a 392 (399)
T KOG0296|consen 331 TKLKWLN-TDYLLTACA-NGKVRQWDA-RTGQLKFT---------YTGHQ-----MGILDFALSPQKRLV-VTVSDDNTA 392 (399)
T ss_pred EEEEEcC-cchheeecc-CceEEeeec-cccceEEE---------EecCc-----hheeEEEEcCCCcEE-EEecCCCeE
Confidence 4555555 455555443 455555432 13433211 23443 236899999999998 555578888
Q ss_pred EEEEe
Q 027522 83 RQYNI 87 (222)
Q Consensus 83 ~vf~i 87 (222)
.||++
T Consensus 393 ~VF~v 397 (399)
T KOG0296|consen 393 LVFEV 397 (399)
T ss_pred EEEec
Confidence 99987
No 249
>COG3204 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=49.04 E-value=2e+02 Score=27.14 Aligned_cols=42 Identities=17% Similarity=0.146 Sum_probs=29.9
Q ss_pred CceeEEEEcCCCCEEEEEeCCCCcEEEEEecCCCCCeEEEEEEecc
Q 027522 58 GLITDFLISLDDRFLYFSNWLHGDIRQYNIEDPKNPVLTGQIWVGG 103 (222)
Q Consensus 58 ~~~adI~iSpDgrfLYvSnRgh~sI~vf~i~d~~~~~L~~~v~~gG 103 (222)
+..+++.-+||.|+||+-.- +.. ++-.++ ..|.++++++.-|
T Consensus 86 ~nvS~LTynp~~rtLFav~n-~p~-~iVElt--~~GdlirtiPL~g 127 (316)
T COG3204 86 ANVSSLTYNPDTRTLFAVTN-KPA-AIVELT--KEGDLIRTIPLTG 127 (316)
T ss_pred ccccceeeCCCcceEEEecC-CCc-eEEEEe--cCCceEEEecccc
Confidence 34799999999999996642 222 334553 3578889998865
No 250
>PRK10115 protease 2; Provisional
Probab=49.01 E-value=2.1e+02 Score=29.16 Aligned_cols=18 Identities=11% Similarity=0.233 Sum_probs=14.4
Q ss_pred eeEEEEcCCCCEEEEEeC
Q 027522 60 ITDFLISLDDRFLYFSNW 77 (222)
Q Consensus 60 ~adI~iSpDgrfLYvSnR 77 (222)
...+.+|||||+|..+--
T Consensus 129 l~~~~~Spdg~~la~~~d 146 (686)
T PRK10115 129 LGGMAITPDNTIMALAED 146 (686)
T ss_pred EeEEEECCCCCEEEEEec
Confidence 467889999998877644
No 251
>KOG0306 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=48.72 E-value=1.1e+02 Score=32.34 Aligned_cols=66 Identities=15% Similarity=0.235 Sum_probs=43.8
Q ss_pred EEEcCCCCeEEEEeccCceEEEEEeCCCCCeeEEEEEEecCcccccccCCCCCCceeEEEEcCCCCEEEEEeCCCCcEEE
Q 027522 5 FLHDPSKDIGFVGCALASTMVRFSKTQDGSWNHEVAISVKSLKVQNWILPEMPGLITDFLISLDDRFLYFSNWLHGDIRQ 84 (222)
Q Consensus 5 ~afhP~g~~aYvv~ELsstV~~~~~d~~g~~~~~q~is~~p~~~~g~~~~~~~~~~adI~iSpDgrfLYvSnRgh~sI~v 84 (222)
..++|||+++-| .=|++||-+|+.| ++... .++ =|..+| ..-|-||||.+.+ |++-.+.+|-+
T Consensus 514 v~~Spdgk~LaV-sLLdnTVkVyflD---tlKFf--lsL-----YGHkLP-----V~smDIS~DSkli-vTgSADKnVKi 576 (888)
T KOG0306|consen 514 VSVSPDGKLLAV-SLLDNTVKVYFLD---TLKFF--LSL-----YGHKLP-----VLSMDISPDSKLI-VTGSADKNVKI 576 (888)
T ss_pred EEEcCCCcEEEE-EeccCeEEEEEec---ceeee--eee-----cccccc-----eeEEeccCCcCeE-EeccCCCceEE
Confidence 458999998754 5699999999986 23222 222 133222 3568899999988 44545667777
Q ss_pred EEe
Q 027522 85 YNI 87 (222)
Q Consensus 85 f~i 87 (222)
|-.
T Consensus 577 WGL 579 (888)
T KOG0306|consen 577 WGL 579 (888)
T ss_pred ecc
Confidence 766
No 252
>PF10647 Gmad1: Lipoprotein LpqB beta-propeller domain; InterPro: IPR018910 The Gmad1 domain is found associated with IPR019606 from INTERPRO, in bacterial spore formation. It is predicted to have a beta-propeller fold and to have a passive binding role rather than a catalytic function owing to the low number of conserved hydrophilic residues.
Probab=47.91 E-value=1.9e+02 Score=25.34 Aligned_cols=17 Identities=29% Similarity=0.386 Sum_probs=15.1
Q ss_pred CeeEEECCCCCEEEEEe
Q 027522 137 PQMIQLSLDGKRLYVTN 153 (222)
Q Consensus 137 Pr~~~lspdGk~LyvaN 153 (222)
-+.|++||||+|+.+--
T Consensus 114 I~~l~vSpDG~RvA~v~ 130 (253)
T PF10647_consen 114 ITALRVSPDGTRVAVVV 130 (253)
T ss_pred eEEEEECCCCcEEEEEE
Confidence 57899999999998776
No 253
>PF05787 DUF839: Bacterial protein of unknown function (DUF839); InterPro: IPR008557 This family consists of bacterial proteins of unknown function.
Probab=47.57 E-value=3e+02 Score=27.40 Aligned_cols=14 Identities=36% Similarity=0.498 Sum_probs=12.1
Q ss_pred EEECCCCCEEEEEe
Q 027522 140 IQLSLDGKRLYVTN 153 (222)
Q Consensus 140 ~~lspdGk~LyvaN 153 (222)
.++|||||.|||.=
T Consensus 507 ~~fspDg~tlFvni 520 (524)
T PF05787_consen 507 PCFSPDGRTLFVNI 520 (524)
T ss_pred ceECCCCCEEEEEE
Confidence 47899999999965
No 254
>TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL. Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ.
Probab=47.48 E-value=81 Score=28.50 Aligned_cols=30 Identities=7% Similarity=-0.003 Sum_probs=17.5
Q ss_pred CCCEEEEEeCCCCcEEEEEecCCCCCeEEEEEEe
Q 027522 68 DDRFLYFSNWLHGDIRQYNIEDPKNPVLTGQIWV 101 (222)
Q Consensus 68 DgrfLYvSnRgh~sI~vf~i~d~~~~~L~~~v~~ 101 (222)
+|..||+.... +.|..|+. .+++++=+..+
T Consensus 64 ~~~~v~v~~~~-g~v~a~d~---~tG~~~W~~~~ 93 (377)
T TIGR03300 64 AGGKVYAADAD-GTVVALDA---ETGKRLWRVDL 93 (377)
T ss_pred ECCEEEEECCC-CeEEEEEc---cCCcEeeeecC
Confidence 36789988753 56666654 34555433333
No 255
>KOG1408 consensus WD40 repeat protein [Function unknown]
Probab=46.84 E-value=42 Score=35.40 Aligned_cols=30 Identities=10% Similarity=0.107 Sum_probs=24.0
Q ss_pred eeEEEEcCCCCEEEEEeCCC-CcEEEEEecC
Q 027522 60 ITDFLISLDDRFLYFSNWLH-GDIRQYNIED 89 (222)
Q Consensus 60 ~adI~iSpDgrfLYvSnRgh-~sI~vf~i~d 89 (222)
.+.+++|++||||-.---|| -.+.||++.-
T Consensus 81 ~t~vAfS~~GryvatGEcG~~pa~kVw~la~ 111 (1080)
T KOG1408|consen 81 LTCVAFSQNGRYVATGECGRTPASKVWSLAF 111 (1080)
T ss_pred eeEEEEcCCCcEEEecccCCCccceeeeecc
Confidence 48899999999998766555 4689999854
No 256
>KOG4497 consensus Uncharacterized conserved protein WDR8, contains WD repeats [General function prediction only]
Probab=46.23 E-value=69 Score=31.00 Aligned_cols=58 Identities=9% Similarity=0.068 Sum_probs=41.9
Q ss_pred EEEcCCCCeEEEEeccCceEEEEEeCCCCCeeEEEEEEecCcccccccCCCCCCceeEEEEcCCCCEEEEEeCC
Q 027522 5 FLHDPSKDIGFVGCALASTMVRFSKTQDGSWNHEVAISVKSLKVQNWILPEMPGLITDFLISLDDRFLYFSNWL 78 (222)
Q Consensus 5 ~afhP~g~~aYvv~ELsstV~~~~~d~~g~~~~~q~is~~p~~~~g~~~~~~~~~~adI~iSpDgrfLYvSnRg 78 (222)
..++|+|++.-.-.|....|+++....+ +..-++-.+ ...-.+.++|||||--...|.
T Consensus 97 ~~WSPdgrhiL~tseF~lriTVWSL~t~------~~~~~~~pK----------~~~kg~~f~~dg~f~ai~sRr 154 (447)
T KOG4497|consen 97 ISWSPDGRHILLTSEFDLRITVWSLNTQ------KGYLLPHPK----------TNVKGYAFHPDGQFCAILSRR 154 (447)
T ss_pred eeECCCcceEeeeecceeEEEEEEeccc------eeEEecccc----------cCceeEEECCCCceeeeeecc
Confidence 3579999999999999999999987421 122222111 112578999999999988885
No 257
>KOG0282 consensus mRNA splicing factor [Function unknown]
Probab=45.88 E-value=1.6e+02 Score=29.55 Aligned_cols=113 Identities=8% Similarity=0.142 Sum_probs=72.6
Q ss_pred EcCCCCeEEEEeccCceEEEEEeCCCCCeeEEEEEEecCcccccccCCCCCCceeEEEEcCCCCEEEEEeCCCCcEEEEE
Q 027522 7 HDPSKDIGFVGCALASTMVRFSKTQDGSWNHEVAISVKSLKVQNWILPEMPGLITDFLISLDDRFLYFSNWLHGDIRQYN 86 (222)
Q Consensus 7 fhP~g~~aYvv~ELsstV~~~~~d~~g~~~~~q~is~~p~~~~g~~~~~~~~~~adI~iSpDgrfLYvSnRgh~sI~vf~ 86 (222)
|-|...++++-+-|+..|-+|..-.++.. .+ .|.|.. ....|+..|.+|+.+.-+.. +..|..||
T Consensus 222 ~fp~~~hLlLS~gmD~~vklW~vy~~~~~--lr-------tf~gH~-----k~Vrd~~~s~~g~~fLS~sf-D~~lKlwD 286 (503)
T KOG0282|consen 222 WFPKKGHLLLSGGMDGLVKLWNVYDDRRC--LR-------TFKGHR-----KPVRDASFNNCGTSFLSASF-DRFLKLWD 286 (503)
T ss_pred hccceeeEEEecCCCceEEEEEEecCcce--eh-------hhhcch-----hhhhhhhccccCCeeeeeec-ceeeeeec
Confidence 45667788888999999998854223322 11 233331 22479999999988765543 66789997
Q ss_pred ecCCCCCeEEEEEEecceeecCCceeeeeCCCCCCCCCCccccCcccCCCCeeEEECCCCCEEEEEeCCCCccccccccc
Q 027522 87 IEDPKNPVLTGQIWVGGLFRKGSPVVAVTDDGQPYQSDVPEVQGHRLRGGPQMIQLSLDGKRLYVTNSLFSAWDCQFYPE 166 (222)
Q Consensus 87 i~d~~~~~L~~~v~~gG~~~~~~~~~~~~~~~~~~~p~~~~v~G~~~~ggPr~~~lspdGk~LyvaNsl~~~wd~Q~yp~ 166 (222)
+ ++|+.+.+..+ |+. |-.+-+-||+.-++++-
T Consensus 287 t---ETG~~~~~f~~----------------------------~~~----~~cvkf~pd~~n~fl~G------------- 318 (503)
T KOG0282|consen 287 T---ETGQVLSRFHL----------------------------DKV----PTCVKFHPDNQNIFLVG------------- 318 (503)
T ss_pred c---ccceEEEEEec----------------------------CCC----ceeeecCCCCCcEEEEe-------------
Confidence 6 34666544444 444 77888899996666665
Q ss_pred cccCCcEEEEEEeeCCCCCe
Q 027522 167 LKEKGSHMLQIDVNSEKGGM 186 (222)
Q Consensus 167 ~~s~~~~i~~~dvd~~~G~l 186 (222)
-.+.-|.+.|+ .+|++
T Consensus 319 --~sd~ki~~wDi--Rs~kv 334 (503)
T KOG0282|consen 319 --GSDKKIRQWDI--RSGKV 334 (503)
T ss_pred --cCCCcEEEEec--cchHH
Confidence 12455666655 66653
No 258
>KOG3914 consensus WD repeat protein WDR4 [Function unknown]
Probab=44.36 E-value=69 Score=31.03 Aligned_cols=29 Identities=24% Similarity=0.413 Sum_probs=23.3
Q ss_pred CceeEEEEcCCCCEEEEEeCCCCcEEEEEe
Q 027522 58 GLITDFLISLDDRFLYFSNWLHGDIRQYNI 87 (222)
Q Consensus 58 ~~~adI~iSpDgrfLYvSnRgh~sI~vf~i 87 (222)
....|+++|||++|+-.|-| .+.|++-.-
T Consensus 152 Sml~dVavS~D~~~IitaDR-DEkIRvs~y 180 (390)
T KOG3914|consen 152 SMLLDVAVSPDDQFIITADR-DEKIRVSRY 180 (390)
T ss_pred hhhheeeecCCCCEEEEecC-CceEEEEec
Confidence 34689999999999999998 456776554
No 259
>COG4590 ABC-type uncharacterized transport system, permease component [General function prediction only]
Probab=44.25 E-value=23 Score=35.66 Aligned_cols=30 Identities=13% Similarity=0.297 Sum_probs=24.5
Q ss_pred CceeEEEEcCCCCEEEEEeCCCCcEEEEEecC
Q 027522 58 GLITDFLISLDDRFLYFSNWLHGDIRQYNIED 89 (222)
Q Consensus 58 ~~~adI~iSpDgrfLYvSnRgh~sI~vf~i~d 89 (222)
+....|.+.||||+|||-|+ +.+.+|.+..
T Consensus 221 ~~v~qllL~Pdg~~LYv~~g--~~~~v~~L~~ 250 (733)
T COG4590 221 SDVSQLLLTPDGKTLYVRTG--SELVVALLDK 250 (733)
T ss_pred cchHhhEECCCCCEEEEecC--CeEEEEeecc
Confidence 34578999999999999997 6788888743
No 260
>KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=43.76 E-value=4.7e+02 Score=28.65 Aligned_cols=70 Identities=14% Similarity=0.185 Sum_probs=45.2
Q ss_pred EEEcCCCCeEEEEeccCceEEEEEeCCCCCeeEEEEEEecCcccccccCCCCCCceeEEEEcCCCCEEEEEeCCCCcEEE
Q 027522 5 FLHDPSKDIGFVGCALASTMVRFSKTQDGSWNHEVAISVKSLKVQNWILPEMPGLITDFLISLDDRFLYFSNWLHGDIRQ 84 (222)
Q Consensus 5 ~afhP~g~~aYvv~ELsstV~~~~~d~~g~~~~~q~is~~p~~~~g~~~~~~~~~~adI~iSpDgrfLYvSnRgh~sI~v 84 (222)
.+|||.-... |-..=+-.|-.|.+++...|+.. +--..+ |..+-+..+|-.. |-.||--+.+|+|
T Consensus 212 aAfhpTlpli-VSG~DDRqVKlWrmnetKaWEvD----tcrgH~---------nnVssvlfhp~q~-lIlSnsEDksirV 276 (1202)
T KOG0292|consen 212 AAFHPTLPLI-VSGADDRQVKLWRMNETKAWEVD----TCRGHY---------NNVSSVLFHPHQD-LILSNSEDKSIRV 276 (1202)
T ss_pred EEecCCcceE-EecCCcceeeEEEeccccceeeh----hhhccc---------CCcceEEecCccc-eeEecCCCccEEE
Confidence 3788877754 33333556777777766677532 111111 3457777888544 5589989999999
Q ss_pred EEecC
Q 027522 85 YNIED 89 (222)
Q Consensus 85 f~i~d 89 (222)
||.+.
T Consensus 277 wDm~k 281 (1202)
T KOG0292|consen 277 WDMTK 281 (1202)
T ss_pred Eeccc
Confidence 99854
No 261
>PF13970 DUF4221: Domain of unknown function (DUF4221); PDB: 3S9J_A.
Probab=43.20 E-value=2.5e+02 Score=25.37 Aligned_cols=85 Identities=14% Similarity=0.155 Sum_probs=48.2
Q ss_pred EeEEEcCCCCeEEEEeccC-ceEEEEEeCCCCCeeEEEEEEecCcccccccCCCCCCceeEEEEcCCCCEEEEEeCCCCc
Q 027522 3 IRFLHDPSKDIGFVGCALA-STMVRFSKTQDGSWNHEVAISVKSLKVQNWILPEMPGLITDFLISLDDRFLYFSNWLHGD 81 (222)
Q Consensus 3 vr~afhP~g~~aYvv~ELs-stV~~~~~d~~g~~~~~q~is~~p~~~~g~~~~~~~~~~adI~iSpDgrfLYvSnRgh~s 81 (222)
+|...+.+.++.|..+.-. .+|..+..+ ++ +..+.+.+.-++-.|- .....+..+.|..|||.+ .....
T Consensus 47 l~~~~~~~~~yL~f~n~~~~~~i~~~Dl~-~~--~l~~~i~~ekeGpngi------~~~~~~~~~~Dsi~l~~~-~~~~~ 116 (333)
T PF13970_consen 47 LQSFSSDGKKYLYFLNNYKSHSIDIYDLD-SG--KLVKKIPFEKEGPNGI------GRPFGFFQNLDSIFLFNS-YAFPK 116 (333)
T ss_dssp EEEEEETTEEEEEEEE-ST--EEEEEETT-TT--EEEEEEE-BSSSTTB-------TT---EEESSSTTSEEEE-GGGTE
T ss_pred EEEEEcCCcEEEEEEcCCCcceEEEEECC-CC--ceeeeeeeeeECCCCc------cccccceEcCCceEEEec-CCcce
Confidence 4555555566666666664 789988875 33 5566666654433332 334577799999999988 54556
Q ss_pred EEEEEecCCCCCeEEEEEEe
Q 027522 82 IRQYNIEDPKNPVLTGQIWV 101 (222)
Q Consensus 82 I~vf~i~d~~~~~L~~~v~~ 101 (222)
|.+++. .++++.++..
T Consensus 117 l~~~n~----~G~~~~~~~~ 132 (333)
T PF13970_consen 117 LFLFNS----QGEVLKKIDL 132 (333)
T ss_dssp EEEE-T----T--EEEEEE-
T ss_pred EEEEcC----CCeEEEEEec
Confidence 777743 4667666665
No 262
>PF05935 Arylsulfotrans: Arylsulfotransferase (ASST); InterPro: IPR010262 This family consists of several bacterial arylsulphotransferase proteins. Arylsulphotransferase (ASST) transfers a sulphate group from phenolic sulphate esters to a phenolic acceptor substrate [].; PDB: 3ETT_B 3ELQ_A 3ETS_A.
Probab=42.25 E-value=3.3e+02 Score=26.39 Aligned_cols=125 Identities=13% Similarity=0.057 Sum_probs=58.6
Q ss_pred ceeEEEEcCCCCEEEEEeCCCCcEEEEEecCCCCCeEEEEEEecceeecCCceeeeeCCCCCCCC------CCccccCcc
Q 027522 59 LITDFLISLDDRFLYFSNWLHGDIRQYNIEDPKNPVLTGQIWVGGLFRKGSPVVAVTDDGQPYQS------DVPEVQGHR 132 (222)
Q Consensus 59 ~~adI~iSpDgrfLYvSnRgh~sI~vf~i~d~~~~~L~~~v~~gG~~~~~~~~~~~~~~~~~~~p------~~~~v~G~~ 132 (222)
..-.|...+.+--|.+|.|-.+.|..++. .++++.=.+...+.+.....=.....-+....| ......|.|
T Consensus 272 H~Nsi~yd~~dd~iivSsR~~s~V~~Id~---~t~~i~Wilg~~~~w~~~~~~~ll~~vd~~G~~~~~~~~~~~~~~gQH 348 (477)
T PF05935_consen 272 HINSIDYDPSDDSIIVSSRHQSAVIKIDY---RTGKIKWILGPPGGWNGTYQDYLLTPVDSNGNPIDCGDGDFDWFWGQH 348 (477)
T ss_dssp -EEEEEEETTTTEEEEEETTT-EEEEEE----TTS-EEEEES-STT--TTTGGGB-EEB-TTS-B-EBSSSS----SS-E
T ss_pred ccCccEEeCCCCeEEEEcCcceEEEEEEC---CCCcEEEEeCCCCCCCcccchheeeeeccCCceeeccCCCCccccccc
Confidence 35678888988899999998887776653 345662122211111110000000000000000 111122444
Q ss_pred cCCCCeeEEECCCC---CEEEEEeCCCCccccccccccccCCcEEEEEEeeCCCCCeeeccce
Q 027522 133 LRGGPQMIQLSLDG---KRLYVTNSLFSAWDCQFYPELKEKGSHMLQIDVNSEKGGMAINPNF 192 (222)
Q Consensus 133 ~~ggPr~~~lspdG---k~LyvaNsl~~~wd~Q~yp~~~s~~~~i~~~dvd~~~G~l~~~~~f 192 (222)
...+.++| ..|+.-|.-...-.+..|+....+.+.++++.||..++..++...|
T Consensus 349 ------~~~~~~~g~~~~l~vFDNg~~r~~~~~~~~~~~~~~Sr~v~Y~Ide~~~T~~~vw~y 405 (477)
T PF05935_consen 349 ------TAHLIPDGPQGNLLVFDNGNGRGYGQPAYVSPKDNYSRAVEYRIDENKMTVEQVWEY 405 (477)
T ss_dssp ------EEEE-TTS---SEEEEE--TTGGGS--SSCCG-----EEEEEEEETTTTEEEEEEEE
T ss_pred ------ceEEcCCCCeEEEEEEECCCCCCCCCccccccccccceEEEEEecCCCceEEEEEEe
Confidence 77889999 9999999766666655555555556778888888887765544443
No 263
>COG2319 FOG: WD40 repeat [General function prediction only]
Probab=41.66 E-value=2e+02 Score=23.60 Aligned_cols=68 Identities=16% Similarity=0.234 Sum_probs=39.5
Q ss_pred cCCCCeEEEE-eccCceEEEEEeCCCCCeeEEEEEEecCcccccccCCCCCCceeEEEEcCCCCEEEEEeCCCCcEEEEE
Q 027522 8 DPSKDIGFVG-CALASTMVRFSKTQDGSWNHEVAISVKSLKVQNWILPEMPGLITDFLISLDDRFLYFSNWLHGDIRQYN 86 (222)
Q Consensus 8 hP~g~~aYvv-~ELsstV~~~~~d~~g~~~~~q~is~~p~~~~g~~~~~~~~~~adI~iSpDgrfLYvSnRgh~sI~vf~ 86 (222)
++++....+. ...+.++..+.... .......+...+ ....++.++|+++++.+.....+.+.+|+
T Consensus 119 ~~~~~~~~~~~~~~d~~~~~~~~~~--~~~~~~~~~~~~------------~~v~~~~~~~~~~~~~~~~~~~~~~~~~~ 184 (466)
T COG2319 119 SPDGNSILLASSSLDGTVKLWDLST--PGKLIRTLEGHS------------ESVTSLAFSPDGKLLASGSSLDGTIKLWD 184 (466)
T ss_pred CCCcceEEeccCCCCccEEEEEecC--CCeEEEEEecCc------------ccEEEEEECCCCCEEEecCCCCCceEEEE
Confidence 6777733333 34466666665532 112222222221 33468999999996655533488999998
Q ss_pred ecC
Q 027522 87 IED 89 (222)
Q Consensus 87 i~d 89 (222)
+..
T Consensus 185 ~~~ 187 (466)
T COG2319 185 LRT 187 (466)
T ss_pred cCC
Confidence 854
No 264
>KOG0268 consensus Sof1-like rRNA processing protein (contains WD40 repeats) [RNA processing and modification]
Probab=41.01 E-value=1e+02 Score=30.06 Aligned_cols=34 Identities=15% Similarity=0.148 Sum_probs=28.7
Q ss_pred ceeEEEEcCCCCEEEEEeCCCCcEEEEEecCCCCC
Q 027522 59 LITDFLISLDDRFLYFSNWLHGDIRQYNIEDPKNP 93 (222)
Q Consensus 59 ~~adI~iSpDgrfLYvSnRgh~sI~vf~i~d~~~~ 93 (222)
...-|..+|-..++-+|++.+++|.+||.. .+.|
T Consensus 189 ti~svkfNpvETsILas~~sDrsIvLyD~R-~~~P 222 (433)
T KOG0268|consen 189 SISSVKFNPVETSILASCASDRSIVLYDLR-QASP 222 (433)
T ss_pred ceeEEecCCCcchheeeeccCCceEEEecc-cCCc
Confidence 346799999999999999999999999983 3444
No 265
>KOG0299 consensus U3 snoRNP-associated protein (contains WD40 repeats) [RNA processing and modification]
Probab=40.92 E-value=99 Score=30.68 Aligned_cols=28 Identities=21% Similarity=0.431 Sum_probs=23.0
Q ss_pred eeEEEEcCCCCEEEEEeCCCCcEEEEEec
Q 027522 60 ITDFLISLDDRFLYFSNWLHGDIRQYNIE 88 (222)
Q Consensus 60 ~adI~iSpDgrfLYvSnRgh~sI~vf~i~ 88 (222)
+..+.+|||++|+|-+.- .++|.-|++.
T Consensus 145 ~~~vals~d~~~~fsask-~g~i~kw~v~ 172 (479)
T KOG0299|consen 145 VTSVALSPDDKRVFSASK-DGTILKWDVL 172 (479)
T ss_pred ceEEEeeccccceeecCC-Ccceeeeehh
Confidence 588999999999996553 5689999884
No 266
>KOG1354 consensus Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]
Probab=40.60 E-value=50 Score=31.97 Aligned_cols=85 Identities=14% Similarity=0.114 Sum_probs=50.1
Q ss_pred EcCCCCeEEEEeccCceEEEEEeCCCCC-eeEEEEEEecCcccccccCCCCCCceeEEEEcCCCCEEEEEeCCCCcEEEE
Q 027522 7 HDPSKDIGFVGCALASTMVRFSKTQDGS-WNHEVAISVKSLKVQNWILPEMPGLITDFLISLDDRFLYFSNWLHGDIRQY 85 (222)
Q Consensus 7 fhP~g~~aYvv~ELsstV~~~~~d~~g~-~~~~q~is~~p~~~~g~~~~~~~~~~adI~iSpDgrfLYvSnRgh~sI~vf 85 (222)
|||.....|+-.--.++|-.+...+..- -...+...-|..+..-.-..+.-+.++||.+|++|||+- .|..-+|.+|
T Consensus 221 Fhp~~cn~f~YSSSKGtIrLcDmR~~aLCd~hsKlfEepedp~~rsffseiIsSISDvKFs~sGryil--sRDyltvk~w 298 (433)
T KOG1354|consen 221 FHPHHCNVFVYSSSKGTIRLCDMRQSALCDAHSKLFEEPEDPSSRSFFSEIISSISDVKFSHSGRYIL--SRDYLTVKLW 298 (433)
T ss_pred cCHhHccEEEEecCCCcEEEeechhhhhhcchhhhhccccCCcchhhHHHHhhhhhceEEccCCcEEE--EeccceeEEE
Confidence 8888887888777777888886632100 011111111111100000011225689999999999764 5778899999
Q ss_pred EecCCCCC
Q 027522 86 NIEDPKNP 93 (222)
Q Consensus 86 ~i~d~~~~ 93 (222)
|+....+|
T Consensus 299 D~nme~~p 306 (433)
T KOG1354|consen 299 DLNMEAKP 306 (433)
T ss_pred eccccCCc
Confidence 99655555
No 267
>KOG0319 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=39.38 E-value=43 Score=34.94 Aligned_cols=31 Identities=39% Similarity=0.822 Sum_probs=23.3
Q ss_pred CCCeeEEECCCCCEEEEEeCCCCccccccccccccCCcEEEEEEeeCCCCCe
Q 027522 135 GGPQMIQLSLDGKRLYVTNSLFSAWDCQFYPELKEKGSHMLQIDVNSEKGGM 186 (222)
Q Consensus 135 ggPr~~~lspdGk~LyvaNsl~~~wd~Q~yp~~~s~~~~i~~~dvd~~~G~l 186 (222)
||| +++|++|+.||.++ +..|..+|+ .||..
T Consensus 22 GG~--~~~s~nG~~L~t~~-----------------~d~Vi~idv--~t~~~ 52 (775)
T KOG0319|consen 22 GGP--VAWSSNGQHLYTAC-----------------GDRVIIIDV--ATGSI 52 (775)
T ss_pred CCc--eeECCCCCEEEEec-----------------CceEEEEEc--cCCce
Confidence 346 89999999999998 556666655 55654
No 268
>KOG0267 consensus Microtubule severing protein katanin p80 subunit B (contains WD40 repeats) [Cell cycle control, cell division, chromosome partitioning]
Probab=38.98 E-value=72 Score=33.45 Aligned_cols=29 Identities=17% Similarity=0.141 Sum_probs=22.3
Q ss_pred EEEcCCCCeEEEEeccCceEEEEEeCCCCCe
Q 027522 5 FLHDPSKDIGFVGCALASTMVRFSKTQDGSW 35 (222)
Q Consensus 5 ~afhP~g~~aYvv~ELsstV~~~~~d~~g~~ 35 (222)
+.|+|+|+|.-..+| +.+|-+|... .|++
T Consensus 160 l~lsP~Gr~v~~g~e-d~tvki~d~~-agk~ 188 (825)
T KOG0267|consen 160 LRLSPDGRWVASGGE-DNTVKIWDLT-AGKL 188 (825)
T ss_pred EeecCCCceeeccCC-cceeeeeccc-cccc
Confidence 478999999999999 7888777653 3443
No 269
>KOG1036 consensus Mitotic spindle checkpoint protein BUB3, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning]
Probab=38.95 E-value=43 Score=31.61 Aligned_cols=30 Identities=27% Similarity=0.489 Sum_probs=26.8
Q ss_pred ceeEEEEcCCCCEEEEEeCCCCcEEEEEecC
Q 027522 59 LITDFLISLDDRFLYFSNWLHGDIRQYNIED 89 (222)
Q Consensus 59 ~~adI~iSpDgrfLYvSnRgh~sI~vf~i~d 89 (222)
.++.+.+||...+|-||+| ++++++|++..
T Consensus 15 ~IS~v~f~~~~~~LLvssW-DgslrlYdv~~ 44 (323)
T KOG1036|consen 15 GISSVKFSPSSSDLLVSSW-DGSLRLYDVPA 44 (323)
T ss_pred ceeeEEEcCcCCcEEEEec-cCcEEEEeccc
Confidence 4699999999999999997 78999999954
No 270
>PF05787 DUF839: Bacterial protein of unknown function (DUF839); InterPro: IPR008557 This family consists of bacterial proteins of unknown function.
Probab=38.88 E-value=1.2e+02 Score=30.14 Aligned_cols=19 Identities=32% Similarity=0.256 Sum_probs=16.3
Q ss_pred CceeEEEEcCCCCEEEEEe
Q 027522 58 GLITDFLISLDDRFLYFSN 76 (222)
Q Consensus 58 ~~~adI~iSpDgrfLYvSn 76 (222)
+..+.+.+|||+|.|||+-
T Consensus 502 aE~tG~~fspDg~tlFvni 520 (524)
T PF05787_consen 502 AEITGPCFSPDGRTLFVNI 520 (524)
T ss_pred cccccceECCCCCEEEEEE
Confidence 4568899999999999974
No 271
>PF04762 IKI3: IKI3 family; InterPro: IPR006849 Members of this family are components of the elongator multi-subunit component of a novel RNA polymerase II holoenzyme for transcriptional elongation [].
Probab=38.78 E-value=5.2e+02 Score=27.67 Aligned_cols=63 Identities=22% Similarity=0.197 Sum_probs=42.0
Q ss_pred CceeEEEEcCCCCEEEEEeCCCCcEEEEEecC-CCCCeEEEEEEecceeecCCceeeeeCCCCCCCCCCccccCcccCCC
Q 027522 58 GLITDFLISLDDRFLYFSNWLHGDIRQYNIED-PKNPVLTGQIWVGGLFRKGSPVVAVTDDGQPYQSDVPEVQGHRLRGG 136 (222)
Q Consensus 58 ~~~adI~iSpDgrfLYvSnRgh~sI~vf~i~d-~~~~~L~~~v~~gG~~~~~~~~~~~~~~~~~~~p~~~~v~G~~~~gg 136 (222)
.....+.--+|..-|++.-. .|+|..+..+. ++.. .+.+.|.+. +|
T Consensus 76 ~~ivs~~yl~d~~~l~~~~~-~Gdi~~~~~~~~~~~~----~~E~VG~vd----------------------------~G 122 (928)
T PF04762_consen 76 DKIVSFQYLADSESLCIALA-SGDIILVREDPDPDED----EIEIVGSVD----------------------------SG 122 (928)
T ss_pred CcEEEEEeccCCCcEEEEEC-CceEEEEEccCCCCCc----eeEEEEEEc----------------------------Cc
Confidence 45678888888888887775 56788774421 2212 234444332 23
Q ss_pred CeeEEECCCCCEEEEEe
Q 027522 137 PQMIQLSLDGKRLYVTN 153 (222)
Q Consensus 137 Pr~~~lspdGk~LyvaN 153 (222)
=..++.|||+.-|.++.
T Consensus 123 I~a~~WSPD~Ella~vT 139 (928)
T PF04762_consen 123 ILAASWSPDEELLALVT 139 (928)
T ss_pred EEEEEECCCcCEEEEEe
Confidence 55899999999999887
No 272
>KOG4532 consensus WD40-like repeat containing protein [General function prediction only]
Probab=37.78 E-value=2.6e+02 Score=26.53 Aligned_cols=76 Identities=12% Similarity=0.165 Sum_probs=45.2
Q ss_pred EEEcCCCCeEEEEeccCceEEEEEeCCCCCeeEEEEEEecCcccccccCCCCCCceeEEEEcC-CCCEEEEEeCCCCcEE
Q 027522 5 FLHDPSKDIGFVGCALASTMVRFSKTQDGSWNHEVAISVKSLKVQNWILPEMPGLITDFLISL-DDRFLYFSNWLHGDIR 83 (222)
Q Consensus 5 ~afhP~g~~aYvv~ELsstV~~~~~d~~g~~~~~q~is~~p~~~~g~~~~~~~~~~adI~iSp-DgrfLYvSnRgh~sI~ 83 (222)
++++|+++++-+++. +..|++|..+.++..... +...|..-.| + -..+|. |-.|--+ .-.++++
T Consensus 164 ~~~snd~~~~~~Vgd-s~~Vf~y~id~~sey~~~--~~~a~t~D~g--------F--~~S~s~~~~~FAv~--~Qdg~~~ 228 (344)
T KOG4532|consen 164 LHYSNDPSWGSSVGD-SRRVFRYAIDDESEYIEN--IYEAPTSDHG--------F--YNSFSENDLQFAVV--FQDGTCA 228 (344)
T ss_pred eEEcCCCceEEEecC-CCcceEEEeCCccceeee--eEecccCCCc--------e--eeeeccCcceEEEE--ecCCcEE
Confidence 568899999999987 678999988755544333 3222211111 1 122333 3333333 3578999
Q ss_pred EEEecCCCCCeE
Q 027522 84 QYNIEDPKNPVL 95 (222)
Q Consensus 84 vf~i~d~~~~~L 95 (222)
+|||..-+.|.+
T Consensus 229 I~DVR~~~tpm~ 240 (344)
T KOG4532|consen 229 IYDVRNMATPMA 240 (344)
T ss_pred EEEecccccchh
Confidence 999965455544
No 273
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=36.70 E-value=3.9e+02 Score=28.06 Aligned_cols=71 Identities=11% Similarity=0.195 Sum_probs=52.6
Q ss_pred EEEcCCCCeEEEEeccCceEEEEEeCCCCCeeEEEEEEecCcccccccCCCCCCceeEEEEcCCCCEEEEEeCCCCcEEE
Q 027522 5 FLHDPSKDIGFVGCALASTMVRFSKTQDGSWNHEVAISVKSLKVQNWILPEMPGLITDFLISLDDRFLYFSNWLHGDIRQ 84 (222)
Q Consensus 5 ~afhP~g~~aYvv~ELsstV~~~~~d~~g~~~~~q~is~~p~~~~g~~~~~~~~~~adI~iSpDgrfLYvSnRgh~sI~v 84 (222)
++-||..+++-.... +-+|-.|.|+ +.|.-.|+.. |.. -..-.|.+.|.+.--++|+-.+.+|-|
T Consensus 103 iavHPt~P~vLtsSD-Dm~iKlW~we--~~wa~~qtfe-------GH~-----HyVMqv~fnPkD~ntFaS~sLDrTVKV 167 (794)
T KOG0276|consen 103 IAVHPTLPYVLTSSD-DMTIKLWDWE--NEWACEQTFE-------GHE-----HYVMQVAFNPKDPNTFASASLDRTVKV 167 (794)
T ss_pred eeecCCCCeEEecCC-ccEEEEeecc--CceeeeeEEc-------Ccc-----eEEEEEEecCCCccceeeeeccccEEE
Confidence 567888886543332 3457777774 6798888753 321 345789999999999999999999999
Q ss_pred EEecCC
Q 027522 85 YNIEDP 90 (222)
Q Consensus 85 f~i~d~ 90 (222)
|.+..+
T Consensus 168 Wslgs~ 173 (794)
T KOG0276|consen 168 WSLGSP 173 (794)
T ss_pred EEcCCC
Confidence 999554
No 274
>KOG1445 consensus Tumor-specific antigen (contains WD repeats) [Cytoskeleton]
Probab=36.66 E-value=2.1e+02 Score=30.15 Aligned_cols=70 Identities=11% Similarity=0.121 Sum_probs=47.3
Q ss_pred eEEEcCCCCeEEEEeccCceEEEEEeCCCCCeeEEEEEEecCcccccccCCCCCCceeEEEEcCCCCEEEEEeCCCCc--
Q 027522 4 RFLHDPSKDIGFVGCALASTMVRFSKTQDGSWNHEVAISVKSLKVQNWILPEMPGLITDFLISLDDRFLYFSNWLHGD-- 81 (222)
Q Consensus 4 r~afhP~g~~aYvv~ELsstV~~~~~d~~g~~~~~q~is~~p~~~~g~~~~~~~~~~adI~iSpDgrfLYvSnRgh~s-- 81 (222)
-||++|+|+.+-.+|- +.+|.+|.... + ++.+--.+.+ +...+|-|..-.|||+|.|+....-+
T Consensus 725 ~~AWSpdGr~~AtVcK-Dg~~rVy~Prs-~----e~pv~Eg~gp--------vgtRgARi~wacdgr~viv~Gfdk~SeR 790 (1012)
T KOG1445|consen 725 GIAWSPDGRRIATVCK-DGTLRVYEPRS-R----EQPVYEGKGP--------VGTRGARILWACDGRIVIVVGFDKSSER 790 (1012)
T ss_pred EEEECCCCcceeeeec-CceEEEeCCCC-C----CCccccCCCC--------ccCcceeEEEEecCcEEEEecccccchh
Confidence 4799999999999997 88999986532 1 1111111111 22456999999999999999875433
Q ss_pred -EEEEEe
Q 027522 82 -IRQYNI 87 (222)
Q Consensus 82 -I~vf~i 87 (222)
|.+|+-
T Consensus 791 Qv~~Y~A 797 (1012)
T KOG1445|consen 791 QVQMYDA 797 (1012)
T ss_pred hhhhhhh
Confidence 555544
No 275
>KOG0278 consensus Serine/threonine kinase receptor-associated protein [Lipid transport and metabolism]
Probab=35.83 E-value=3.8e+02 Score=25.22 Aligned_cols=68 Identities=16% Similarity=0.174 Sum_probs=44.9
Q ss_pred eEEEEcCCCCEEEEEeCCCCcEEEEEecCCCCCeEEEEEEecceeecCCceeeeeCCCCCCCCCCccccCcccCCCCeeE
Q 027522 61 TDFLISLDDRFLYFSNWLHGDIRQYNIEDPKNPVLTGQIWVGGLFRKGSPVVAVTDDGQPYQSDVPEVQGHRLRGGPQMI 140 (222)
Q Consensus 61 adI~iSpDgrfLYvSnRgh~sI~vf~i~d~~~~~L~~~v~~gG~~~~~~~~~~~~~~~~~~~p~~~~v~G~~~~ggPr~~ 140 (222)
..+-++-|-.+|=. --.+.|+.||+. +++.+.++..- .+ +..+
T Consensus 148 ~v~wc~eD~~iLSS--add~tVRLWD~r---Tgt~v~sL~~~----------------------------s~----VtSl 190 (334)
T KOG0278|consen 148 TVLWCHEDKCILSS--ADDKTVRLWDHR---TGTEVQSLEFN----------------------------SP----VTSL 190 (334)
T ss_pred eEEEeccCceEEee--ccCCceEEEEec---cCcEEEEEecC----------------------------CC----Ccce
Confidence 44555666666533 457899999984 36666666651 12 6789
Q ss_pred EECCCCCEEEEEe-CCCCcccccccc
Q 027522 141 QLSLDGKRLYVTN-SLFSAWDCQFYP 165 (222)
Q Consensus 141 ~lspdGk~LyvaN-sl~~~wd~Q~yp 165 (222)
.+|+||++|-.|. |=-+=||...|-
T Consensus 191 Evs~dG~ilTia~gssV~Fwdaksf~ 216 (334)
T KOG0278|consen 191 EVSQDGRILTIAYGSSVKFWDAKSFG 216 (334)
T ss_pred eeccCCCEEEEecCceeEEecccccc
Confidence 9999999998874 334556666443
No 276
>PF08116 Toxin_29: PhTx neurotoxin family; InterPro: IPR012634 This family consists of PhTx insecticidal neurotoxins that are found in the venom of Phoneutria nigriventer (Brazilian armed spider). The venom of the P. nigrivente contains numerous neurotoxic polypeptides of 30-140 amino acids, which exert a range of biological effects. While some of these neurotoxins are lethal to mice after intracerebroventricular injections, others are extremely toxic to insects of the orders Diptera and Dictyoptera but had much weaker toxic effects on mice [].; GO: 0009405 pathogenesis, 0005576 extracellular region
Probab=35.78 E-value=17 Score=22.95 Aligned_cols=10 Identities=70% Similarity=1.298 Sum_probs=9.5
Q ss_pred ecCCCCcCcc
Q 027522 210 RYPGGDCTSD 219 (222)
Q Consensus 210 r~~~gd~~sd 219 (222)
||+|--||||
T Consensus 4 ~~nGqQCtSD 13 (31)
T PF08116_consen 4 RYNGQQCTSD 13 (31)
T ss_pred ccCccccCcC
Confidence 8999999999
No 277
>KOG0267 consensus Microtubule severing protein katanin p80 subunit B (contains WD40 repeats) [Cell cycle control, cell division, chromosome partitioning]
Probab=35.74 E-value=30 Score=36.10 Aligned_cols=89 Identities=11% Similarity=0.057 Sum_probs=45.8
Q ss_pred eEEEEcCCCCEEEEEeCCCCcEEEEEecCCCCCeEEEEEEe---cceeecCCceeeeeC-------CCCCCCCCC-cccc
Q 027522 61 TDFLISLDDRFLYFSNWLHGDIRQYNIEDPKNPVLTGQIWV---GGLFRKGSPVVAVTD-------DGQPYQSDV-PEVQ 129 (222)
Q Consensus 61 adI~iSpDgrfLYvSnRgh~sI~vf~i~d~~~~~L~~~v~~---gG~~~~~~~~~~~~~-------~~~~~~p~~-~~v~ 129 (222)
--+++||||||+-.-+- ..++.+|+... +++...... -+...-+.|-+++.. -..|+.=+. --..
T Consensus 158 ~~l~lsP~Gr~v~~g~e-d~tvki~d~~a---gk~~~ef~~~e~~v~sle~hp~e~Lla~Gs~d~tv~f~dletfe~I~s 233 (825)
T KOG0267|consen 158 DVLRLSPDGRWVASGGE-DNTVKIWDLTA---GKLSKEFKSHEGKVQSLEFHPLEVLLAPGSSDRTVRFWDLETFEVISS 233 (825)
T ss_pred EEEeecCCCceeeccCC-cceeeeecccc---cccccccccccccccccccCchhhhhccCCCCceeeeeccceeEEeec
Confidence 34689999999854442 47899998743 444311110 000000001111100 000111111 1124
Q ss_pred CcccCCCCeeEEECCCCCEEEEEe
Q 027522 130 GHRLRGGPQMIQLSLDGKRLYVTN 153 (222)
Q Consensus 130 G~~~~ggPr~~~lspdGk~LyvaN 153 (222)
|+...+++|...++|||+.++...
T Consensus 234 ~~~~~~~v~~~~fn~~~~~~~~G~ 257 (825)
T KOG0267|consen 234 GKPETDGVRSLAFNPDGKIVLSGE 257 (825)
T ss_pred cCCccCCceeeeecCCceeeecCc
Confidence 666688999999999999988764
No 278
>TIGR02171 Fb_sc_TIGR02171 Fibrobacter succinogenes paralogous family TIGR02171. This model describes a paralogous family of the rumen bacterium Fibrobacter succinogenes. Eleven members are found in Fibrobacter succinogenes S85, averaging over 900 amino acids in length. More than half are predicted lipoproteins. The function is unknown.
Probab=35.53 E-value=3.1e+02 Score=29.60 Aligned_cols=66 Identities=11% Similarity=0.095 Sum_probs=35.5
Q ss_pred CCCeEEEEeccCceEEEEEeCCCCCeeEEEEEEecCcccccccCCCCCCceeEEEEcCCCCEE-E-EEeCC---CCcEEE
Q 027522 10 SKDIGFVGCALASTMVRFSKTQDGSWNHEVAISVKSLKVQNWILPEMPGLITDFLISLDDRFL-Y-FSNWL---HGDIRQ 84 (222)
Q Consensus 10 ~g~~aYvv~ELsstV~~~~~d~~g~~~~~q~is~~p~~~~g~~~~~~~~~~adI~iSpDgrfL-Y-vSnRg---h~sI~v 84 (222)
+.|.|||.. +...+.+..++.. . .+++.+-. . ..+..=.+|||||+| | +|=.+ .-+|-+
T Consensus 318 ~tkiAfv~~-~~~~L~~~D~dG~-n---~~~ve~~~---~--------~~i~sP~~SPDG~~vAY~ts~e~~~g~s~vYv 381 (912)
T TIGR02171 318 KAKLAFRND-VTGNLAYIDYTKG-A---SRAVEIED---T--------ISVYHPDISPDGKKVAFCTGIEGLPGKSSVYV 381 (912)
T ss_pred eeeEEEEEc-CCCeEEEEecCCC-C---ceEEEecC---C--------CceecCcCCCCCCEEEEEEeecCCCCCceEEE
Confidence 467788876 3447777776521 1 12221110 0 112233689999998 4 44444 344777
Q ss_pred EEecCCC
Q 027522 85 YNIEDPK 91 (222)
Q Consensus 85 f~i~d~~ 91 (222)
-++...+
T Consensus 382 ~~L~t~~ 388 (912)
T TIGR02171 382 RNLNASG 388 (912)
T ss_pred EehhccC
Confidence 7775433
No 279
>COG2133 Glucose/sorbosone dehydrogenases [Carbohydrate transport and metabolism]
Probab=35.49 E-value=1.5e+02 Score=28.73 Aligned_cols=26 Identities=27% Similarity=0.533 Sum_probs=20.6
Q ss_pred CeeEEECCCCCEEEEEeCCCCccccccccccccCCcEEEEE
Q 027522 137 PQMIQLSLDGKRLYVTNSLFSAWDCQFYPELKEKGSHMLQI 177 (222)
Q Consensus 137 Pr~~~lspdGk~LyvaNsl~~~wd~Q~yp~~~s~~~~i~~~ 177 (222)
||+++.-|||-.|...+ | .++.|+|+
T Consensus 369 ~~dV~v~~DGallv~~D--------~-------~~g~i~Rv 394 (399)
T COG2133 369 PRDVAVAPDGALLVLTD--------Q-------GDGRILRV 394 (399)
T ss_pred ccceEECCCCeEEEeec--------C-------CCCeEEEe
Confidence 99999999998655555 3 37788887
No 280
>KOG0286 consensus G-protein beta subunit [General function prediction only]
Probab=34.84 E-value=4.1e+02 Score=25.33 Aligned_cols=69 Identities=16% Similarity=0.105 Sum_probs=46.2
Q ss_pred EEEcCCCCeEEEEeccCceEEEEEeC-C--CCCeeEEEEEEecCcccccccCCCCCCceeEEEEcCCCCEEEEEeCCCCc
Q 027522 5 FLHDPSKDIGFVGCALASTMVRFSKT-Q--DGSWNHEVAISVKSLKVQNWILPEMPGLITDFLISLDDRFLYFSNWLHGD 81 (222)
Q Consensus 5 ~afhP~g~~aYvv~ELsstV~~~~~d-~--~g~~~~~q~is~~p~~~~g~~~~~~~~~~adI~iSpDgrfLYvSnRgh~s 81 (222)
.||+|+|+++-.. -|++..++|... . +|.. ++...++. .+ ++.+.+..-.|+..|=.| |+-+
T Consensus 103 CA~sPSg~~VAcG-GLdN~Csiy~ls~~d~~g~~---~v~r~l~g-Ht--------gylScC~f~dD~~ilT~S--GD~T 167 (343)
T KOG0286|consen 103 CAYSPSGNFVACG-GLDNKCSIYPLSTRDAEGNV---RVSRELAG-HT--------GYLSCCRFLDDNHILTGS--GDMT 167 (343)
T ss_pred EEECCCCCeEEec-CcCceeEEEecccccccccc---eeeeeecC-cc--------ceeEEEEEcCCCceEecC--CCce
Confidence 5899999976544 389998888653 2 3322 22222221 12 557889998888776555 7889
Q ss_pred EEEEEec
Q 027522 82 IRQYNIE 88 (222)
Q Consensus 82 I~vf~i~ 88 (222)
.+.|||.
T Consensus 168 CalWDie 174 (343)
T KOG0286|consen 168 CALWDIE 174 (343)
T ss_pred EEEEEcc
Confidence 9999994
No 281
>smart00320 WD40 WD40 repeats. Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain.
Probab=34.56 E-value=71 Score=16.45 Aligned_cols=26 Identities=23% Similarity=0.378 Sum_probs=18.2
Q ss_pred ceeEEEEcCCCCEEEEEeCCCCcEEEE
Q 027522 59 LITDFLISLDDRFLYFSNWLHGDIRQY 85 (222)
Q Consensus 59 ~~adI~iSpDgrfLYvSnRgh~sI~vf 85 (222)
....+.++++++++..++ .++.|.+|
T Consensus 14 ~i~~~~~~~~~~~~~~~~-~d~~~~~~ 39 (40)
T smart00320 14 PVTSVAFSPDGKYLASAS-DDGTIKLW 39 (40)
T ss_pred ceeEEEECCCCCEEEEec-CCCeEEEc
Confidence 357888888888776554 35667776
No 282
>KOG2315 consensus Predicted translation initiation factor related to eIF-3a [Translation, ribosomal structure and biogenesis]
Probab=34.54 E-value=1.9e+02 Score=29.38 Aligned_cols=68 Identities=15% Similarity=0.225 Sum_probs=43.2
Q ss_pred eEEEcCCCCeEEEEe--ccCceEEEEEeCCCCCeeEEEEEEecCcccccccCCCCCCceeEEEEcCCCCEEEEEe-----
Q 027522 4 RFLHDPSKDIGFVGC--ALASTMVRFSKTQDGSWNHEVAISVKSLKVQNWILPEMPGLITDFLISLDDRFLYFSN----- 76 (222)
Q Consensus 4 r~afhP~g~~aYvv~--ELsstV~~~~~d~~g~~~~~q~is~~p~~~~g~~~~~~~~~~adI~iSpDgrfLYvSn----- 76 (222)
++.|+|.|+++-+.. -|.+.|-+|+.. + . ++.+..- + .-++-+.-||||+|++++.
T Consensus 316 ~~~fnp~g~ii~lAGFGNL~G~mEvwDv~-n--~--K~i~~~~---a---------~~tt~~eW~PdGe~flTATTaPRl 378 (566)
T KOG2315|consen 316 TAFFNPHGNIILLAGFGNLPGDMEVWDVP-N--R--KLIAKFK---A---------ANTTVFEWSPDGEYFLTATTAPRL 378 (566)
T ss_pred ceEECCCCCEEEEeecCCCCCceEEEecc-c--h--hhccccc---c---------CCceEEEEcCCCcEEEEEeccccE
Confidence 456788887765532 166667777542 1 1 1111111 1 2247788999999999875
Q ss_pred CCCCcEEEEEec
Q 027522 77 WLHGDIRQYNIE 88 (222)
Q Consensus 77 Rgh~sI~vf~i~ 88 (222)
|.++.|.+|+++
T Consensus 379 rvdNg~Kiwhyt 390 (566)
T KOG2315|consen 379 RVDNGIKIWHYT 390 (566)
T ss_pred EecCCeEEEEec
Confidence 358999999995
No 283
>KOG0275 consensus Conserved WD40 repeat-containing protein [General function prediction only]
Probab=33.12 E-value=4.7e+02 Score=25.50 Aligned_cols=77 Identities=16% Similarity=0.202 Sum_probs=49.2
Q ss_pred cCCCCeEEEEeccCceEEEEEeCCCCCeeEEEEEEecCcccccccCCCCCCceeEEEEcCCCCEEEEEeCCCCcEEEEEe
Q 027522 8 DPSKDIGFVGCALASTMVRFSKTQDGSWNHEVAISVKSLKVQNWILPEMPGLITDFLISLDDRFLYFSNWLHGDIRQYNI 87 (222)
Q Consensus 8 hP~g~~aYvv~ELsstV~~~~~d~~g~~~~~q~is~~p~~~~g~~~~~~~~~~adI~iSpDgrfLYvSnRgh~sI~vf~i 87 (222)
-|...--|++|--++||.+.... | +..+..+. .+-+|. .+ -...+||-|.|+|+-. -++.+-.|.+
T Consensus 401 ~PKnpeh~iVCNrsntv~imn~q--G--QvVrsfsS--GkREgG------dF-i~~~lSpkGewiYcig-ED~vlYCF~~ 466 (508)
T KOG0275|consen 401 LPKNPEHFIVCNRSNTVYIMNMQ--G--QVVRSFSS--GKREGG------DF-INAILSPKGEWIYCIG-EDGVLYCFSV 466 (508)
T ss_pred cCCCCceEEEEcCCCeEEEEecc--c--eEEeeecc--CCccCC------ce-EEEEecCCCcEEEEEc-cCcEEEEEEe
Confidence 46667789999999999999773 4 22222232 222332 22 4567899999999875 2556778877
Q ss_pred cCCCCCeEEEEEEe
Q 027522 88 EDPKNPVLTGQIWV 101 (222)
Q Consensus 88 ~d~~~~~L~~~v~~ 101 (222)
.. ++|-....+
T Consensus 467 ~s---G~LE~tl~V 477 (508)
T KOG0275|consen 467 LS---GKLERTLPV 477 (508)
T ss_pred ec---Cceeeeeec
Confidence 43 556444444
No 284
>COG3823 Glutamine cyclotransferase [Posttranslational modification, protein turnover, chaperones]
Probab=32.95 E-value=1.6e+02 Score=26.92 Aligned_cols=96 Identities=18% Similarity=0.278 Sum_probs=62.3
Q ss_pred CCCCEEEEEeCCCCcEEEEEecCCCCCeEEEEEEecceeecCCceeeeeCCCCCCCCCCccccCcccCCCCeeEEECCCC
Q 027522 67 LDDRFLYFSNWLHGDIRQYNIEDPKNPVLTGQIWVGGLFRKGSPVVAVTDDGQPYQSDVPEVQGHRLRGGPQMIQLSLDG 146 (222)
Q Consensus 67 pDgrfLYvSnRgh~sI~vf~i~d~~~~~L~~~v~~gG~~~~~~~~~~~~~~~~~~~p~~~~v~G~~~~ggPr~~~lspdG 146 (222)
.=|..+|+=.|-.+.--.|+. .+.+-.++.+-.|. | -.|.-||
T Consensus 98 ~~gd~~y~LTw~egvaf~~d~---~t~~~lg~~~y~Ge-------------------------G---------WgLt~d~ 140 (262)
T COG3823 98 KLGDYFYQLTWKEGVAFKYDA---DTLEELGRFSYEGE-------------------------G---------WGLTSDD 140 (262)
T ss_pred eccceEEEEEeccceeEEECh---HHhhhhcccccCCc-------------------------c---------eeeecCC
Confidence 446788999997775545544 33444455454321 2 3788899
Q ss_pred CEEEEEeCCCCccccccccccccCCcEEEEEEeeCCCCCeeeccceeEecCCCCCCCcceeeeecCCCCcCcccc
Q 027522 147 KRLYVTNSLFSAWDCQFYPELKEKGSHMLQIDVNSEKGGMAINPNFFVDFEAEPDGPALAHEMRYPGGDCTSDIW 221 (222)
Q Consensus 147 k~LyvaNsl~~~wd~Q~yp~~~s~~~~i~~~dvd~~~G~l~~~~~f~vdf~~~~~g~~~~h~~r~~~gd~~sd~~ 221 (222)
+.|..++ .+.++..+ ||++- ..+....|-+.+.|-+ --.|.-|-.|---.-||
T Consensus 141 ~~Limsd----------------GsatL~fr--dP~tf--a~~~~v~VT~~g~pv~--~LNELE~VdG~lyANVw 193 (262)
T COG3823 141 KNLIMSD----------------GSATLQFR--DPKTF--AELDTVQVTDDGVPVS--KLNELEWVDGELYANVW 193 (262)
T ss_pred cceEeeC----------------CceEEEec--CHHHh--hhcceEEEEECCeecc--cccceeeeccEEEEeee
Confidence 9998887 46666667 66765 4566677777777766 55677776665555555
No 285
>PF14870 PSII_BNR: Photosynthesis system II assembly factor YCF48; PDB: 2XBG_A.
Probab=32.75 E-value=3.5e+02 Score=25.02 Aligned_cols=26 Identities=31% Similarity=0.522 Sum_probs=17.7
Q ss_pred CeeEEECCCCCEEEEEe--CCCCccccc
Q 027522 137 PQMIQLSLDGKRLYVTN--SLFSAWDCQ 162 (222)
Q Consensus 137 Pr~~~lspdGk~LyvaN--sl~~~wd~Q 162 (222)
=+.+.-++||++|.|++ .+|.+||.-
T Consensus 147 ~~~~~r~~dG~~vavs~~G~~~~s~~~G 174 (302)
T PF14870_consen 147 INDITRSSDGRYVAVSSRGNFYSSWDPG 174 (302)
T ss_dssp EEEEEE-TTS-EEEEETTSSEEEEE-TT
T ss_pred eEeEEECCCCcEEEEECcccEEEEecCC
Confidence 56777889999998885 478888754
No 286
>COG1497 Predicted transcriptional regulator [Transcription]
Probab=32.20 E-value=1.3e+02 Score=27.61 Aligned_cols=55 Identities=20% Similarity=0.314 Sum_probs=43.9
Q ss_pred eEEEEcCCCCEEEEEeCCCCcEEEEEecCCCCCeEEEEEEecceeecC-Cceeeee
Q 027522 61 TDFLISLDDRFLYFSNWLHGDIRQYNIEDPKNPVLTGQIWVGGLFRKG-SPVVAVT 115 (222)
Q Consensus 61 adI~iSpDgrfLYvSnRgh~sI~vf~i~d~~~~~L~~~v~~gG~~~~~-~~~~~~~ 115 (222)
-.+.+.+-+-+||+|-...+.-.--.+++...+..++-..++|.++-. ++|.++-
T Consensus 109 d~V~L~M~dG~LyA~~~~kg~A~g~A~~dA~~GedV~it~i~G~Id~e~G~v~i~~ 164 (260)
T COG1497 109 DTVYLRMKDGYLYASRSAKGGATGVALTDAEKGEDVGITEIGGMIDVEKGEVTIVK 164 (260)
T ss_pred CEEEEEecCcEEEEeccCCCcceeEEecccccCCeeeeeeccCcccCCCCeEEEEE
Confidence 589999999999999998774444455566678899999999998866 7777774
No 287
>KOG4659 consensus Uncharacterized conserved protein (Rhs family) [Function unknown]
Probab=31.87 E-value=2.9e+02 Score=31.48 Aligned_cols=83 Identities=19% Similarity=0.183 Sum_probs=48.5
Q ss_pred CceeEEEEcCCCCEEEEEeCCCCcEEEEEecC--CCCCeEEEEEEec-ceeecCCceeeeeCCCCCCCCCCccccCcccC
Q 027522 58 GLITDFLISLDDRFLYFSNWLHGDIRQYNIED--PKNPVLTGQIWVG-GLFRKGSPVVAVTDDGQPYQSDVPEVQGHRLR 134 (222)
Q Consensus 58 ~~~adI~iSpDgrfLYvSnRgh~sI~vf~i~d--~~~~~L~~~v~~g-G~~~~~~~~~~~~~~~~~~~p~~~~v~G~~~~ 134 (222)
+...-|++||=+--||||--.|. .+|+|.+ +..+..--.|-.| |..+ -|-++.|+|..+-..- +=-
T Consensus 407 sh~Yy~AvsPvdgtlyvSdp~s~--qv~rv~sl~~~d~~~N~evvaG~Ge~C-lp~desCGDGalA~dA-----~L~--- 475 (1899)
T KOG4659|consen 407 SHSYYIAVSPVDGTLYVSDPLSK--QVWRVSSLEPQDSRNNYEVVAGDGEVC-LPADESCGDGALAQDA-----QLI--- 475 (1899)
T ss_pred cceeEEEecCcCceEEecCCCcc--eEEEeccCCccccccCeeEEeccCcCc-cccccccCcchhcccc-----eec---
Confidence 66789999999999999986554 5567754 2223332222222 2211 1333445543332211 112
Q ss_pred CCCeeEEECCCCCEEEEEe
Q 027522 135 GGPQMIQLSLDGKRLYVTN 153 (222)
Q Consensus 135 ggPr~~~lspdGk~LyvaN 153 (222)
.||-++++.+|- ||.|.
T Consensus 476 -~PkGIa~dk~g~-lYfaD 492 (1899)
T KOG4659|consen 476 -FPKGIAFDKMGN-LYFAD 492 (1899)
T ss_pred -cCCceeEccCCc-EEEec
Confidence 299999999995 88886
No 288
>PF14251 DUF4346: Domain of unknown function (DUF4346)
Probab=30.65 E-value=67 Score=26.29 Aligned_cols=46 Identities=15% Similarity=0.228 Sum_probs=26.0
Q ss_pred CeeEEECCCCCEEEEEeCCCCccccccccccccCCcEEEEEEeeCCCCCe
Q 027522 137 PQMIQLSLDGKRLYVTNSLFSAWDCQFYPELKEKGSHMLQIDVNSEKGGM 186 (222)
Q Consensus 137 Pr~~~lspdGk~LyvaNsl~~~wd~Q~yp~~~s~~~~i~~~dvd~~~G~l 186 (222)
-|.+.|+|.|-||.--+.=-.---.++|.-.|-+.+ +.+||+||+.
T Consensus 9 ~R~i~LDp~GYfiI~~d~~~~~i~a~h~~n~I~~~G----la~Dpetge~ 54 (119)
T PF14251_consen 9 QRFIDLDPAGYFIIYVDREAGEICAEHYTNDIDDKG----LAVDPETGEV 54 (119)
T ss_pred cCccccCCCccEEEEEeCCCCeeeHhhccCccCccc----ceeCCCCCCE
Confidence 578999999999875541001111123333332222 4568899876
No 289
>PF14298 DUF4374: Domain of unknown function (DUF4374)
Probab=30.04 E-value=3.4e+02 Score=26.79 Aligned_cols=66 Identities=26% Similarity=0.410 Sum_probs=45.1
Q ss_pred eEEECCCCCEEEEEeCCCCc----cccccccccccCCcEEEEEEeeCCCCCeeeccceeEecCCCCCCCcceeeeecCCC
Q 027522 139 MIQLSLDGKRLYVTNSLFSA----WDCQFYPELKEKGSHMLQIDVNSEKGGMAINPNFFVDFEAEPDGPALAHEMRYPGG 214 (222)
Q Consensus 139 ~~~lspdGk~LyvaNsl~~~----wd~Q~yp~~~s~~~~i~~~dvd~~~G~l~~~~~f~vdf~~~~~g~~~~h~~r~~~g 214 (222)
.+..+.+|. |||=..=+++ +..|. +.-.-|+|| .+|...++++++.|+.+..+| .....|-|-|+
T Consensus 279 ~i~~~enGD-vYvfS~s~a~~~~~~~~~s-----tkPSGilRI----k~G~teFD~~Yffnle~~sgg-~~~~~~~yIG~ 347 (435)
T PF14298_consen 279 GIWKDENGD-VYVFSPSYAKTMSDGKSQS-----TKPSGILRI----KKGTTEFDKSYFFNLEAKSGG-YKFFRVWYIGN 347 (435)
T ss_pred eeeEeCCCC-EEEEcCccccccccccccc-----CCccEEEEE----CCCCcccCcceEeeeecccCC-cceEEEEEecC
Confidence 456788888 6644322333 23443 456888888 678889999999999998888 33445566665
Q ss_pred C
Q 027522 215 D 215 (222)
Q Consensus 215 d 215 (222)
+
T Consensus 348 ~ 348 (435)
T PF14298_consen 348 N 348 (435)
T ss_pred C
Confidence 4
No 290
>PRK13614 lipoprotein LpqB; Provisional
Probab=29.72 E-value=3.2e+02 Score=27.74 Aligned_cols=35 Identities=6% Similarity=0.001 Sum_probs=23.8
Q ss_pred ceeEEEEcCCCCEEEEEe--CCCCcEEEEEecCCCCC
Q 027522 59 LITDFLISLDDRFLYFSN--WLHGDIRQYNIEDPKNP 93 (222)
Q Consensus 59 ~~adI~iSpDgrfLYvSn--Rgh~sI~vf~i~d~~~~ 93 (222)
.+++++||+||-.+-+=- =|+..|.+--|..+..+
T Consensus 435 ~I~~lrvSrDG~R~Avi~~~~g~~~V~va~V~R~~~G 471 (573)
T PRK13614 435 TVKELRVSREGVRALVISEQNGKSRVQVAGIVRNEDG 471 (573)
T ss_pred eeEEEEECCCccEEEEEEEeCCccEEEEEEEEeCCCC
Confidence 489999999998776433 34455777777554334
No 291
>KOG2103 consensus Uncharacterized conserved protein [Function unknown]
Probab=29.66 E-value=2.3e+02 Score=30.28 Aligned_cols=74 Identities=20% Similarity=0.213 Sum_probs=51.5
Q ss_pred EeEEEcCCCCeEEEEeccCceEEEEEeCCCCCeeEEEEEEecCcccccccCCCCCCceeEEEEcCCCCEEEEEeCCCCcE
Q 027522 3 IRFLHDPSKDIGFVGCALASTMVRFSKTQDGSWNHEVAISVKSLKVQNWILPEMPGLITDFLISLDDRFLYFSNWLHGDI 82 (222)
Q Consensus 3 vr~afhP~g~~aYvv~ELsstV~~~~~d~~g~~~~~q~is~~p~~~~g~~~~~~~~~~adI~iSpDgrfLYvSnRgh~sI 82 (222)
.++.+++..++.||..|- +-|..+.- .+|..-..|++..+++.. | ...+- -||-|||+||+.|--.| +
T Consensus 39 ~~~~~~t~~~rlivsT~~-~vlAsL~~-~tGei~WRqvl~~~~~~~-~-------~~~~~-~iS~dg~~lr~wn~~~g-~ 106 (910)
T KOG2103|consen 39 NFLVYDTKSKRLIVSTEK-GVLASLNL-RTGEIIWRQVLEPKTSGL-G-------VPLTN-TISVDGRYLRSWNTNNG-I 106 (910)
T ss_pred EEEeecCCCceEEEEecc-chhheecc-cCCcEEEEEeccCCCccc-C-------cceeE-EEccCCcEEEeecCCCc-e
Confidence 467889999999999994 45555544 368877788876655432 2 22233 39999999999997555 4
Q ss_pred EEEEec
Q 027522 83 RQYNIE 88 (222)
Q Consensus 83 ~vf~i~ 88 (222)
-.|.+.
T Consensus 107 l~~~i~ 112 (910)
T KOG2103|consen 107 LDWEIE 112 (910)
T ss_pred eeeecc
Confidence 556664
No 292
>PRK13684 Ycf48-like protein; Provisional
Probab=29.37 E-value=4.5e+02 Score=24.07 Aligned_cols=17 Identities=18% Similarity=0.239 Sum_probs=11.5
Q ss_pred CeeEEECCCCCEEEEEe
Q 027522 137 PQMIQLSLDGKRLYVTN 153 (222)
Q Consensus 137 Pr~~~lspdGk~LyvaN 153 (222)
...+.+.++|+.+.|++
T Consensus 217 l~~i~~~~~g~~~~vg~ 233 (334)
T PRK13684 217 LQSMGFQPDGNLWMLAR 233 (334)
T ss_pred ceeeeEcCCCCEEEEec
Confidence 56777888887555543
No 293
>KOG0641 consensus WD40 repeat protein [General function prediction only]
Probab=29.32 E-value=2.7e+02 Score=25.85 Aligned_cols=61 Identities=11% Similarity=0.166 Sum_probs=43.9
Q ss_pred CceeEEEEcCCCCEEEEEeCCCCcEEEEEecCCCCCeEEEEEEecceeecCCceeeeeCCCCCCCCCCccccCcccCCCC
Q 027522 58 GLITDFLISLDDRFLYFSNWLHGDIRQYNIEDPKNPVLTGQIWVGGLFRKGSPVVAVTDDGQPYQSDVPEVQGHRLRGGP 137 (222)
Q Consensus 58 ~~~adI~iSpDgrfLYvSnRgh~sI~vf~i~d~~~~~L~~~v~~gG~~~~~~~~~~~~~~~~~~~p~~~~v~G~~~~ggP 137 (222)
+..+++.+.|.||.| +|...+.+-..|+|.. ++.+++.. |-. .. -
T Consensus 232 savaav~vdpsgrll-~sg~~dssc~lydirg---~r~iq~f~----------------------phs-----ad----i 276 (350)
T KOG0641|consen 232 SAVAAVAVDPSGRLL-ASGHADSSCMLYDIRG---GRMIQRFH----------------------PHS-----AD----I 276 (350)
T ss_pred ceeEEEEECCCccee-eeccCCCceEEEEeeC---CceeeeeC----------------------CCc-----cc----e
Confidence 346899999999987 7877778899999943 44544333 211 11 6
Q ss_pred eeEEECCCCCEEEEEe
Q 027522 138 QMIQLSLDGKRLYVTN 153 (222)
Q Consensus 138 r~~~lspdGk~LyvaN 153 (222)
|.+.+||.-.+|+.+.
T Consensus 277 r~vrfsp~a~yllt~s 292 (350)
T KOG0641|consen 277 RCVRFSPGAHYLLTCS 292 (350)
T ss_pred eEEEeCCCceEEEEec
Confidence 7889999998888765
No 294
>PF11635 Med16: Mediator complex subunit 16; InterPro: IPR021665 Mediator is a large complex of up to 33 proteins that is conserved from plants through fungi to humans - the number and representation of individual subunits varying with species [],[]. It is arranged into four different sections, a core, a head, a tail and a kinase-activity part, and the number of subunits within each of these is what varies with species. Overall, Mediator regulates the transcriptional activity of RNA polymerase II but it would appear that each of the four different sections has a slightly different function. Med16 is one of the subunits of the Tail portion of the Mediator complex and is required for lipopolysaccharide gene-expression []. Several members including the human protein, Q9Y2X0 from SWISSPROT, have one or more WD40 domains on them, PF00400 from PFAM.
Probab=29.23 E-value=2.5e+02 Score=29.04 Aligned_cols=77 Identities=13% Similarity=0.264 Sum_probs=52.5
Q ss_pred EEcCCC-CeEEEEeccCceEEEEEeCCCCCeeEEEEEEecCccc-ccccCCCCCCceeEEEEcCCCCEEEEEeCC--CCc
Q 027522 6 LHDPSK-DIGFVGCALASTMVRFSKTQDGSWNHEVAISVKSLKV-QNWILPEMPGLITDFLISLDDRFLYFSNWL--HGD 81 (222)
Q Consensus 6 afhP~g-~~aYvv~ELsstV~~~~~d~~g~~~~~q~is~~p~~~-~g~~~~~~~~~~adI~iSpDgrfLYvSnRg--h~s 81 (222)
.|||.. +.|.+.-=-++.|..|+...+++|.......+.+-.. ..+ =.-|+|.-+.+|+.|-++..+ .+.
T Consensus 55 ~~HP~~~K~A~i~Vt~nG~l~l~yQ~~~~~~~~~s~~el~s~~~s~~~------ithAsi~~~~~g~~ili~t~s~~s~~ 128 (753)
T PF11635_consen 55 PFHPGPAKSACIAVTRNGLLKLWYQKPDGQWNESSTAELESLGSSDDL------ITHASIAPSDNGKSILIATYSSLSKQ 128 (753)
T ss_pred CcCCCCCceEEEEEecCCeEEEEEEcCCCccceeehhhhccccccccc------eeeceeeecCCCCEEEEEEccccCCc
Confidence 578876 8888876666777766665667776555332211111 122 223899999999999988887 789
Q ss_pred EEEEEec
Q 027522 82 IRQYNIE 88 (222)
Q Consensus 82 I~vf~i~ 88 (222)
|..|+|.
T Consensus 129 l~~yrv~ 135 (753)
T PF11635_consen 129 LRFYRVQ 135 (753)
T ss_pred eEEEEEE
Confidence 9999984
No 295
>KOG1408 consensus WD40 repeat protein [Function unknown]
Probab=29.10 E-value=4.6e+02 Score=28.12 Aligned_cols=63 Identities=17% Similarity=0.189 Sum_probs=44.4
Q ss_pred CceeEEEEcCCCCEEEEEeCCCCcEEEEEecCCCCCeEEEEEEecceeecCCceeeeeCCCCCCCCCCccccCccc-CCC
Q 027522 58 GLITDFLISLDDRFLYFSNWLHGDIRQYNIEDPKNPVLTGQIWVGGLFRKGSPVVAVTDDGQPYQSDVPEVQGHRL-RGG 136 (222)
Q Consensus 58 ~~~adI~iSpDgrfLYvSnRgh~sI~vf~i~d~~~~~L~~~v~~gG~~~~~~~~~~~~~~~~~~~p~~~~v~G~~~-~gg 136 (222)
...+|+.+.|.-+++-..|- +..|++|+|.. +|++.... |.+= .|.
T Consensus 597 tTlYDm~Vdp~~k~v~t~cQ-Drnirif~i~s---gKq~k~FK-----------------------------gs~~~eG~ 643 (1080)
T KOG1408|consen 597 TTLYDMAVDPTSKLVVTVCQ-DRNIRIFDIES---GKQVKSFK-----------------------------GSRDHEGD 643 (1080)
T ss_pred ceEEEeeeCCCcceEEEEec-ccceEEEeccc---cceeeeec-----------------------------ccccCCCc
Confidence 44689999999999988774 55799999954 44422111 1111 245
Q ss_pred CeeEEECCCCCEEEEEe
Q 027522 137 PQMIQLSLDGKRLYVTN 153 (222)
Q Consensus 137 Pr~~~lspdGk~LyvaN 153 (222)
+=-++|+|.|-||..++
T Consensus 644 lIKv~lDPSgiY~atSc 660 (1080)
T KOG1408|consen 644 LIKVILDPSGIYLATSC 660 (1080)
T ss_pred eEEEEECCCccEEEEee
Confidence 77899999998887776
No 296
>COG4247 Phy 3-phytase (myo-inositol-hexaphosphate 3-phosphohydrolase) [Lipid metabolism]
Probab=28.59 E-value=2e+02 Score=27.18 Aligned_cols=22 Identities=32% Similarity=0.386 Sum_probs=17.9
Q ss_pred EEEeCCCCcEEEEEecCCCCCeE
Q 027522 73 YFSNWLHGDIRQYNIEDPKNPVL 95 (222)
Q Consensus 73 YvSnRgh~sI~vf~i~d~~~~~L 95 (222)
-+|+|-|+.|+.|.| ||....|
T Consensus 117 aASdR~~~~i~~y~I-dp~~~~L 138 (364)
T COG4247 117 AASDRQNDKIVFYKI-DPNPQYL 138 (364)
T ss_pred ecccccCCeEEEEEe-CCCccce
Confidence 379999999999999 5665555
No 297
>KOG4378 consensus Nuclear protein COP1 [Signal transduction mechanisms]
Probab=28.31 E-value=4.1e+02 Score=27.24 Aligned_cols=72 Identities=15% Similarity=0.248 Sum_probs=50.4
Q ss_pred EEEcCCCCeEEEEeccCceEEEEEeCCCCCeeEEEEEEecCcccccccCCCCCCceeEEEEcCCCCEEEEEeCCCCcEEE
Q 027522 5 FLHDPSKDIGFVGCALASTMVRFSKTQDGSWNHEVAISVKSLKVQNWILPEMPGLITDFLISLDDRFLYFSNWLHGDIRQ 84 (222)
Q Consensus 5 ~afhP~g~~aYvv~ELsstV~~~~~d~~g~~~~~q~is~~p~~~~g~~~~~~~~~~adI~iSpDgrfLYvSnRgh~sI~v 84 (222)
..|+|....++|---++-.|..|.-. .-+....+..- .--+.+.++++|-+|-+-| ..|.|.+
T Consensus 214 icfspsne~l~vsVG~Dkki~~yD~~---s~~s~~~l~y~-------------~Plstvaf~~~G~~L~aG~-s~G~~i~ 276 (673)
T KOG4378|consen 214 ICFSPSNEALLVSVGYDKKINIYDIR---SQASTDRLTYS-------------HPLSTVAFSECGTYLCAGN-SKGELIA 276 (673)
T ss_pred ceecCCccceEEEecccceEEEeecc---cccccceeeec-------------CCcceeeecCCceEEEeec-CCceEEE
Confidence 47899999999999999999988642 11222222111 1127899999999997766 4688999
Q ss_pred EEecCCCCC
Q 027522 85 YNIEDPKNP 93 (222)
Q Consensus 85 f~i~d~~~~ 93 (222)
||+.....|
T Consensus 277 YD~R~~k~P 285 (673)
T KOG4378|consen 277 YDMRSTKAP 285 (673)
T ss_pred EecccCCCC
Confidence 999544444
No 298
>PF12566 DUF3748: Protein of unknown function (DUF3748); InterPro: IPR022223 This domain family is found in bacteria and eukaryotes, and is approximately 120 amino acids in length.
Probab=27.61 E-value=58 Score=26.70 Aligned_cols=24 Identities=42% Similarity=0.580 Sum_probs=18.4
Q ss_pred cCcccCCCCeeEEECCCCCEEEEEe
Q 027522 129 QGHRLRGGPQMIQLSLDGKRLYVTN 153 (222)
Q Consensus 129 ~G~~~~ggPr~~~lspdGk~LyvaN 153 (222)
.|. |+||---=.+||||+||=-+-
T Consensus 63 ~GA-LRGGtHvHvfSpDG~~lSFTY 86 (122)
T PF12566_consen 63 PGA-LRGGTHVHVFSPDGSWLSFTY 86 (122)
T ss_pred Ccc-ccCCccceEECCCCCEEEEEe
Confidence 344 667776789999999997764
No 299
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=27.52 E-value=1e+02 Score=29.93 Aligned_cols=17 Identities=24% Similarity=0.432 Sum_probs=13.7
Q ss_pred CeeEEECCCCCEEEEEe
Q 027522 137 PQMIQLSLDGKRLYVTN 153 (222)
Q Consensus 137 Pr~~~lspdGk~LyvaN 153 (222)
||.++.+|+|+++.|+.
T Consensus 35 p~~ls~npngr~v~V~g 51 (443)
T PF04053_consen 35 PQSLSHNPNGRFVLVCG 51 (443)
T ss_dssp -SEEEE-TTSSEEEEEE
T ss_pred CeeEEECCCCCEEEEEc
Confidence 99999999999999974
No 300
>PF05935 Arylsulfotrans: Arylsulfotransferase (ASST); InterPro: IPR010262 This family consists of several bacterial arylsulphotransferase proteins. Arylsulphotransferase (ASST) transfers a sulphate group from phenolic sulphate esters to a phenolic acceptor substrate [].; PDB: 3ETT_B 3ELQ_A 3ETS_A.
Probab=26.10 E-value=4.5e+02 Score=25.44 Aligned_cols=82 Identities=11% Similarity=0.076 Sum_probs=38.2
Q ss_pred EEEcCCCCEEEEEeCCCCcEEEEEecCCCCCeEEEEEEecceeecCCceeeeeCCCCCCCCCCccccCcccCCCCeeEEE
Q 027522 63 FLISLDDRFLYFSNWLHGDIRQYNIEDPKNPVLTGQIWVGGLFRKGSPVVAVTDDGQPYQSDVPEVQGHRLRGGPQMIQL 142 (222)
Q Consensus 63 I~iSpDgrfLYvSnRgh~sI~vf~i~d~~~~~L~~~v~~gG~~~~~~~~~~~~~~~~~~~p~~~~v~G~~~~ggPr~~~l 142 (222)
+.+-+||++|..+. ..++.++. .|+.+-.....+.. ..=.| ++..
T Consensus 153 ~~~l~nG~ll~~~~---~~~~e~D~----~G~v~~~~~l~~~~----------------------~~~HH------D~~~ 197 (477)
T PF05935_consen 153 FKQLPNGNLLIGSG---NRLYEIDL----LGKVIWEYDLPGGY----------------------YDFHH------DIDE 197 (477)
T ss_dssp EEE-TTS-EEEEEB---TEEEEE-T----T--EEEEEE--TTE----------------------E-B-S-------EEE
T ss_pred eeEcCCCCEEEecC---CceEEEcC----CCCEEEeeecCCcc----------------------ccccc------ccEE
Confidence 78889999999887 66666655 24444333332210 00134 7899
Q ss_pred CCCCCEEEEEeCC-CCc-cccccccccccCCcEEEEEEeeCCCCCee
Q 027522 143 SLDGKRLYVTNSL-FSA-WDCQFYPELKEKGSHMLQIDVNSEKGGMA 187 (222)
Q Consensus 143 spdGk~LyvaNsl-~~~-wd~Q~yp~~~s~~~~i~~~dvd~~~G~l~ 187 (222)
.|+|..|+.++.- +.. ...+. .-.+.|+.+ | .+|++.
T Consensus 198 l~nGn~L~l~~~~~~~~~~~~~~-----~~~D~Ivev--d-~tG~vv 236 (477)
T PF05935_consen 198 LPNGNLLILASETKYVDEDKDVD-----TVEDVIVEV--D-PTGEVV 236 (477)
T ss_dssp -TTS-EEEEEEETTEE-TS-EE--------S-EEEEE----TTS-EE
T ss_pred CCCCCEEEEEeecccccCCCCcc-----EecCEEEEE--C-CCCCEE
Confidence 9999999988710 000 01111 235677766 6 788773
No 301
>KOG0294 consensus WD40 repeat-containing protein [Function unknown]
Probab=25.62 E-value=6.1e+02 Score=24.41 Aligned_cols=29 Identities=17% Similarity=0.154 Sum_probs=23.4
Q ss_pred ceeEEEEcCCCCEEEEEeCCCCcEEEEEecC
Q 027522 59 LITDFLISLDDRFLYFSNWLHGDIRQYNIED 89 (222)
Q Consensus 59 ~~adI~iSpDgrfLYvSnRgh~sI~vf~i~d 89 (222)
.++-+..||.|-+.|++.| +.|-+|.+++
T Consensus 170 ~at~v~w~~~Gd~F~v~~~--~~i~i~q~d~ 198 (362)
T KOG0294|consen 170 KATLVSWSPQGDHFVVSGR--NKIDIYQLDN 198 (362)
T ss_pred cceeeEEcCCCCEEEEEec--cEEEEEeccc
Confidence 3456999999999999976 6788998854
No 302
>PF15390 DUF4613: Domain of unknown function (DUF4613)
Probab=25.57 E-value=5.5e+02 Score=26.71 Aligned_cols=88 Identities=19% Similarity=0.256 Sum_probs=52.6
Q ss_pred CCCCeeEEEEEEecCcccccccCCCCCCceeEEEEcCCCCEEEEEeCCCCcEEE-EEecCCCCCeEEEEEEecceeecCC
Q 027522 31 QDGSWNHEVAISVKSLKVQNWILPEMPGLITDFLISLDDRFLYFSNWLHGDIRQ-YNIEDPKNPVLTGQIWVGGLFRKGS 109 (222)
Q Consensus 31 ~~g~~~~~q~is~~p~~~~g~~~~~~~~~~adI~iSpDgrfLYvSnRgh~sI~v-f~i~d~~~~~L~~~v~~gG~~~~~~ 109 (222)
+.++|-..|+-.+-. +.|-++-.++-+|..--|-|=.- .+++| +.| .-++-+....|...|.+..
T Consensus 95 e~~K~l~sQtcEi~e---------~~pvLpQGCVWHPk~~iL~VLT~--~dvSV~~sV-~~d~srVkaDi~~~G~IhC-- 160 (671)
T PF15390_consen 95 ERNKLLMSQTCEIRE---------PFPVLPQGCVWHPKKAILTVLTA--RDVSVLPSV-HCDSSRVKADIKTSGLIHC-- 160 (671)
T ss_pred ccccceeeeeeeccC---------CcccCCCcccccCCCceEEEEec--CceeEeeee-eeCCceEEEeccCCceEEE--
Confidence 346777777765531 11245566777777777766542 23444 344 2233445455666666542
Q ss_pred ceeeeeCCCCCCCCCCccccCcccCCCCeeEEECCCCCEEEEE--eCCCC-ccccc
Q 027522 110 PVVAVTDDGQPYQSDVPEVQGHRLRGGPQMIQLSLDGKRLYVT--NSLFS-AWDCQ 162 (222)
Q Consensus 110 ~~~~~~~~~~~~~p~~~~v~G~~~~ggPr~~~lspdGk~Lyva--Nsl~~-~wd~Q 162 (222)
-+.++||.||.|| ++|-| -||+-
T Consensus 161 ------------------------------ACWT~DG~RLVVAvGSsLHSyiWd~~ 186 (671)
T PF15390_consen 161 ------------------------------ACWTKDGQRLVVAVGSSLHSYIWDSA 186 (671)
T ss_pred ------------------------------EEecCcCCEEEEEeCCeEEEEEecCc
Confidence 3778899999988 66665 58765
No 303
>PF05428 CRF-BP: Corticotropin-releasing factor binding protein (CRF-BP); InterPro: IPR008435 This family consists of several eukaryotic corticotropin-releasing factor binding proteins (CRF-BP or CRH-BP). Corticotropin-releasing hormone (CRH) plays multiple roles in vertebrate species. In mammals, it is the major hypothalamic releasing factor for pituitary adrenocorticotropin secretion, and is a neurotransmitter or neuromodulator at other sites in the central nervous system. In non-mammalian vertebrates, CRH not only acts as a neurotransmitter and hypophysiotropin, it also acts as a potent thyrotropin-releasing factor, allowing CRH to regulate both the adrenal and thyroid axes, especially in development. CRH-BP is thought to play an inhibitory role in which it binds CRH and other CRH-like ligands and prevents the activation of CRH receptors. There is however evidence that CRH-BP may also exhibit diverse extra and intracellular roles in a cell specific fashion and at specific times in development [].
Probab=25.40 E-value=3.7e+02 Score=25.38 Aligned_cols=30 Identities=17% Similarity=0.292 Sum_probs=25.8
Q ss_pred EEcCCCCEEEEEeCCCCcEEEEEecCCCCC
Q 027522 64 LISLDDRFLYFSNWLHGDIRQYNIEDPKNP 93 (222)
Q Consensus 64 ~iSpDgrfLYvSnRgh~sI~vf~i~d~~~~ 93 (222)
.+|-+|+|.|+|.+-.-.-++|-|.+|+..
T Consensus 63 m~s~~G~f~f~a~~pq~~Ca~y~iaePd~~ 92 (311)
T PF05428_consen 63 MLSEEGQFTFTASRPQLVCAAYFIAEPDEL 92 (311)
T ss_pred eeccCceEEEecCCCCceeEEEEEeCCCeE
Confidence 579999999999998888899999887643
No 304
>PRK10115 protease 2; Provisional
Probab=25.38 E-value=7.4e+02 Score=25.30 Aligned_cols=29 Identities=14% Similarity=0.172 Sum_probs=18.4
Q ss_pred eEEEEcCCCCEE-EEEeCC----CCcEEEEEecC
Q 027522 61 TDFLISLDDRFL-YFSNWL----HGDIRQYNIED 89 (222)
Q Consensus 61 adI~iSpDgrfL-YvSnRg----h~sI~vf~i~d 89 (222)
..+..++|++.| |.+++. ...|..+++..
T Consensus 175 ~~~~w~~D~~~~~y~~~~~~~~~~~~v~~h~lgt 208 (686)
T PRK10115 175 PSFVWANDSWTFYYVRKHPVTLLPYQVWRHTIGT 208 (686)
T ss_pred eEEEEeeCCCEEEEEEecCCCCCCCEEEEEECCC
Confidence 458899999755 556632 14566677743
No 305
>PF02974 Inh: Protease inhibitor Inh; InterPro: IPR021140 This entry represents the metalloprotease inhibitor I38, as well as the outer membrane lipoprotein Omp19. Peptide proteinase inhibitors can be found as single domain proteins or as single or multiple domains within proteins; these are referred to as either simple or compound inhibitors, respectively. In many cases they are synthesised as part of a larger precursor protein, either as a prepropeptide or as an N-terminal domain associated with an inactive peptidase or zymogen. This domain prevents access of the substrate to the active site. Removal of the N-terminal inhibitor domain either by interaction with a second peptidase or by autocatalytic cleavage activates the zymogen. Other inhibitors interact direct with proteinases using a simple noncovalent lock and key mechanism; while yet others use a conformational change-based trapping mechanism that depends on their structural and thermodynamic properties. This family of proteins represent monomeric serralysin inhibitors of about 125 residues, which interact with specific metalloprotease which are synthesised by serralysin secretors and characterised by being plant, insect and animal pathogens. It is probable that the serralysin inhibitors protect the host from proteolysis during export of the protease. The members of this family belong to MEROPS proteinase inhibitor family I38, clan IK. X-ray crystallography of a complex between the Serratia marcescens protease, SmaPI, and the inhibitor of Erwinia chrysanthemi, Inh, reveals that Inh is folded into an eight-stranded b-barrel with an N-terminal trunk of 10 residues. Residues 1-5 occupy part of the extended active site of the proteinase, thereby preventing access of the substrate. Residues 6-10 form a linker that connects the N-terminal proteinase-binding peptide to the body of the b-barrel. The backbone carbonyl of Ser-1 interacts with the catalytic zinc; the Ser-2 side chain occupies the S1'-binding site and also forms a hydrogen bond to the carboxyl end of the catalytic Glu, whereas Leu-3 occupies the S2' recognition site. Penetration of the trunk region further than 5 residues into the substrate binding cleft appears to be prevented by the b-barrel, which itself interacts with the proteinase near its Met turn (19). Peptide mimetics of the trunk at concentrations up to about 100 mM do not inhibit the protease, demonstrating that the barrel is essential for inhibitory activity [, ]. Structurally and functionally these inhibitors are closely related to the lipocalins, fatty acid-binding proteins, avidins and the enigmatic triabin. Together these five protein families constitute the calycin superfamily []. The proteins are characterised by their high specificity for small hydrophobic molecules and by their ability to form complexes with soluble macromolecules either through intramolecular disulphides or protein-protein interactions []. ; PDB: 1JIW_I 2RN4_A 1SMP_I.
Probab=25.37 E-value=1.1e+02 Score=23.36 Aligned_cols=32 Identities=22% Similarity=0.189 Sum_probs=24.7
Q ss_pred EEcCCCCeEEEEeccCceEEEEEeCCCCCeeE
Q 027522 6 LHDPSKDIGFVGCALASTMVRFSKTQDGSWNH 37 (222)
Q Consensus 6 afhP~g~~aYvv~ELsstV~~~~~d~~g~~~~ 37 (222)
+++|.++-+++.++-+++|..|+..++|.|+.
T Consensus 56 ~W~~~gd~l~L~d~~G~~v~~f~~~~~g~~~g 87 (99)
T PF02974_consen 56 GWRPTGDGLVLTDADGSVVAFFYRSGDGRFEG 87 (99)
T ss_dssp EEEEETTEEEEE-TTS-EEEEEEEECTTEEEE
T ss_pred ceeEcCCEEEEECCCCCEEEEEEccCCeeEEe
Confidence 47788899999999999999998876676753
No 306
>TIGR03503 conserved hypothetical protein TIGR03503. This set of conserved hypothetical protein has a phylogenetic range that closely matches that of TIGR03501, a putative C-terminal protein targeting signal.
Probab=25.03 E-value=2.2e+02 Score=27.43 Aligned_cols=85 Identities=22% Similarity=0.262 Sum_probs=49.8
Q ss_pred CceeEEEEcCCCCEEEEEeCCCCcEEEEEe--------cCCCCCeEEEEEEecceeecCCceeeeeCCCCCCCC-CCccc
Q 027522 58 GLITDFLISLDDRFLYFSNWLHGDIRQYNI--------EDPKNPVLTGQIWVGGLFRKGSPVVAVTDDGQPYQS-DVPEV 128 (222)
Q Consensus 58 ~~~adI~iSpDgrfLYvSnRgh~sI~vf~i--------~d~~~~~L~~~v~~gG~~~~~~~~~~~~~~~~~~~p-~~~~v 128 (222)
+...-+++.|||.-.|++.--.+.+..|+- .+|-- |....-|.+..+..|+++.+=.+.-.| +.+.-
T Consensus 28 gs~pvvLV~PDGsk~ya~~~~p~~V~W~~~~~~DlItI~~Pmp----GpWq~~G~v~p~sri~viS~L~L~v~plP~~l~ 103 (374)
T TIGR03503 28 GSPPVILVRPDGSKYYAWRVHPEDVKWYDESTMDIISIKNPMP----GPWQAIGKITPGNRVKVISNLRLEVEPLPSPLF 103 (374)
T ss_pred CCCCeEEECCCCcEEeccCCCCCCceEEecCCceEEEeCCCCC----CCcEEeeeeCCCCeEEEEeccEEEEecCCcccc
Confidence 345788999999999987633445666543 23322 344555666666778888765555544 33444
Q ss_pred cCcccCCCCeeEEECCCCCEE
Q 027522 129 QGHRLRGGPQMIQLSLDGKRL 149 (222)
Q Consensus 129 ~G~~~~ggPr~~~lspdGk~L 149 (222)
+|.++ .=...|.-||+.|
T Consensus 104 ~gE~l---k~ta~L~~d~~~i 121 (374)
T TIGR03503 104 QGETL---KVTAKLLNDGEPL 121 (374)
T ss_pred CCCeE---EEEEEEecCCEEe
Confidence 55541 1233455666654
No 307
>KOG0265 consensus U5 snRNP-specific protein-like factor and related proteins [RNA processing and modification]
Probab=25.01 E-value=6.1e+02 Score=24.21 Aligned_cols=67 Identities=12% Similarity=0.214 Sum_probs=45.7
Q ss_pred eEEEcCCCCeEEEEeccCceEEEEEe-C-CCCCeeEEEEEEecCcccccccCCCCCCceeEEEEcCCCCEEEEEeCCCCc
Q 027522 4 RFLHDPSKDIGFVGCALASTMVRFSK-T-QDGSWNHEVAISVKSLKVQNWILPEMPGLITDFLISLDDRFLYFSNWLHGD 81 (222)
Q Consensus 4 r~afhP~g~~aYvv~ELsstV~~~~~-d-~~g~~~~~q~is~~p~~~~g~~~~~~~~~~adI~iSpDgrfLYvSnRgh~s 81 (222)
+..|||+|.+ |+-.-.+-.|+.|.- . .+..|..+ ... +..-+++-.+|++.||-+. .+-.
T Consensus 52 ~~~F~P~gs~-~aSgG~Dr~I~LWnv~gdceN~~~lk--------gHs--------gAVM~l~~~~d~s~i~S~g-tDk~ 113 (338)
T KOG0265|consen 52 TIKFHPDGSC-FASGGSDRAIVLWNVYGDCENFWVLK--------GHS--------GAVMELHGMRDGSHILSCG-TDKT 113 (338)
T ss_pred EEEECCCCCe-EeecCCcceEEEEeccccccceeeec--------ccc--------ceeEeeeeccCCCEEEEec-CCce
Confidence 6789997764 555667788998873 2 22233222 112 3457999999999996554 5778
Q ss_pred EEEEEec
Q 027522 82 IRQYNIE 88 (222)
Q Consensus 82 I~vf~i~ 88 (222)
|+.||+.
T Consensus 114 v~~wD~~ 120 (338)
T KOG0265|consen 114 VRGWDAE 120 (338)
T ss_pred EEEEecc
Confidence 9999984
No 308
>KOG0316 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=24.26 E-value=5.9e+02 Score=23.78 Aligned_cols=110 Identities=13% Similarity=0.197 Sum_probs=63.1
Q ss_pred CceeEEEEcCCCCEEEEEeCCCCcEEEEEecCCCCCeEEEEEEecceeecCCceeeeeCCCCCCCCCCccccCcccCCCC
Q 027522 58 GLITDFLISLDDRFLYFSNWLHGDIRQYNIEDPKNPVLTGQIWVGGLFRKGSPVVAVTDDGQPYQSDVPEVQGHRLRGGP 137 (222)
Q Consensus 58 ~~~adI~iSpDgrfLYvSnRgh~sI~vf~i~d~~~~~L~~~v~~gG~~~~~~~~~~~~~~~~~~~p~~~~v~G~~~~ggP 137 (222)
...-|.++|-|.--+ +||-|+..|.+|||+. ++.+.+... . +.. -
T Consensus 60 ~EVlD~~~s~Dnskf-~s~GgDk~v~vwDV~T---Gkv~Rr~rg--H-------------------------~aq----V 104 (307)
T KOG0316|consen 60 HEVLDAALSSDNSKF-ASCGGDKAVQVWDVNT---GKVDRRFRG--H-------------------------LAQ----V 104 (307)
T ss_pred ceeeecccccccccc-ccCCCCceEEEEEccc---Ceeeeeccc--c-------------------------cce----e
Confidence 345678888887665 8888899999999943 555433322 1 111 5
Q ss_pred eeEEECCCCCEEEEEeCC---CCccccccccccccCCcEEEEEEeeCCCCCee--eccceeEecCCCCCCCcceeeeec
Q 027522 138 QMIQLSLDGKRLYVTNSL---FSAWDCQFYPELKEKGSHMLQIDVNSEKGGMA--INPNFFVDFEAEPDGPALAHEMRY 211 (222)
Q Consensus 138 r~~~lspdGk~LyvaNsl---~~~wd~Q~yp~~~s~~~~i~~~dvd~~~G~l~--~~~~f~vdf~~~~~g~~~~h~~r~ 211 (222)
+.+++..+-.-+ ++-|+ ...||+. |++..=+++=-+..+|-++ +++.-. ..+--+|..|.-.||-
T Consensus 105 NtV~fNeesSVv-~SgsfD~s~r~wDCR------S~s~ePiQildea~D~V~Si~v~~heI--vaGS~DGtvRtydiR~ 174 (307)
T KOG0316|consen 105 NTVRFNEESSVV-ASGSFDSSVRLWDCR------SRSFEPIQILDEAKDGVSSIDVAEHEI--VAGSVDGTVRTYDIRK 174 (307)
T ss_pred eEEEecCcceEE-EeccccceeEEEEcc------cCCCCccchhhhhcCceeEEEecccEE--EeeccCCcEEEEEeec
Confidence 667777666544 44344 4569998 6665444432233444444 222211 2344567777777773
No 309
>PF10411 DsbC_N: Disulfide bond isomerase protein N-terminus; InterPro: IPR018950 This is the N-terminal domain of the disulphide bond isomerase DsbC. The whole molecule is V-shaped, where each arm is a DsbC monomer of two domains linked by a hinge; and the N-termini of each monomer join to form the dimer interface at the base of the V, so are vital for dimerisation []. DsbC is required for disulphide bond formation and functions as a disulphide bond isomerase during oxidative protein-folding in bacterial periplasm. It also has chaperone activity []. ; PDB: 1EEJ_B 2IYJ_A 1TJD_A 1JZD_B 1JZO_A 1G0T_B 1T3B_A.
Probab=24.06 E-value=50 Score=22.85 Aligned_cols=22 Identities=18% Similarity=0.314 Sum_probs=14.5
Q ss_pred eeEEECCCCCEEEEEeCCCCccc
Q 027522 138 QMIQLSLDGKRLYVTNSLFSAWD 160 (222)
Q Consensus 138 r~~~lspdGk~LyvaNsl~~~wd 160 (222)
+.|=.|+||++|++.+ ||..+.
T Consensus 34 ~i~Y~~~dg~yli~G~-l~d~~~ 55 (57)
T PF10411_consen 34 GILYVDEDGRYLIQGQ-LYDLKT 55 (57)
T ss_dssp EEEEEETTSSEEEES--EEE-TT
T ss_pred eEEEEcCCCCEEEEeE-EEecCC
Confidence 4678888998888864 554444
No 310
>KOG2089 consensus Metalloendopeptidase family - saccharolysin & thimet oligopeptidase [Posttranslational modification, protein turnover, chaperones]
Probab=24.05 E-value=55 Score=33.90 Aligned_cols=69 Identities=22% Similarity=0.319 Sum_probs=42.8
Q ss_pred EEeCCCCcEEEEEecCCCCCeEEEEEEecceeecCCceeeeeCCCCCCCCCCccccCcccCCCCeeEEECCCCCEEEEEe
Q 027522 74 FSNWLHGDIRQYNIEDPKNPVLTGQIWVGGLFRKGSPVVAVTDDGQPYQSDVPEVQGHRLRGGPQMIQLSLDGKRLYVTN 153 (222)
Q Consensus 74 vSnRgh~sI~vf~i~d~~~~~L~~~v~~gG~~~~~~~~~~~~~~~~~~~p~~~~v~G~~~~ggPr~~~lspdGk~LyvaN 153 (222)
++-| |.+|++|++.|..+++.+|....- -++| ..=.|.-.+.+=+.+++..+|.+.+--.
T Consensus 415 a~vW-h~dVr~y~v~D~~Sg~~vG~fY~D-~y~R------------------egK~gh~~~f~l~~~~~~~~ss~~~PVa 474 (718)
T KOG2089|consen 415 AEVW-HADVRVYTVKDSASGNPVGYFYLD-PYPR------------------EGKYGHAAVFGLQPGCLQKDSSRRIPVA 474 (718)
T ss_pred chhc-ccceeEEeccCCCCCceeeEEEec-cCCC------------------ccccchhhhhccchhhhccCCccccchH
Confidence 4444 889999999988889999988871 1111 1112333445556677778888876433
Q ss_pred CCCCccccc
Q 027522 154 SLFSAWDCQ 162 (222)
Q Consensus 154 sl~~~wd~Q 162 (222)
+|..+--++
T Consensus 475 alv~nfS~p 483 (718)
T KOG2089|consen 475 ALVCNFSKP 483 (718)
T ss_pred HHHHhcCCc
Confidence 444444443
No 311
>KOG3503 consensus H/ACA snoRNP complex, subunit NOP10 [RNA processing and modification]
Probab=23.77 E-value=1.5e+02 Score=21.59 Aligned_cols=16 Identities=6% Similarity=-0.054 Sum_probs=9.1
Q ss_pred EEEEeccCceEEEEEe
Q 027522 14 GFVGCALASTMVRFSK 29 (222)
Q Consensus 14 aYvv~ELsstV~~~~~ 29 (222)
.|.+||-+-.|..+.+
T Consensus 4 ~y~lne~g~rvYTlKk 19 (64)
T KOG3503|consen 4 MYYLNENGKRVYTLKK 19 (64)
T ss_pred EEEECCCCcEEEEEee
Confidence 4555665555665654
No 312
>PF14583 Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C5M_C 3PE7_A.
Probab=23.67 E-value=1.1e+02 Score=29.59 Aligned_cols=28 Identities=21% Similarity=0.275 Sum_probs=17.7
Q ss_pred eEEEEcCCCCEE-EEEeCCCCcEEEEEecC
Q 027522 61 TDFLISLDDRFL-YFSNWLHGDIRQYNIED 89 (222)
Q Consensus 61 adI~iSpDgrfL-YvSnRgh~sI~vf~i~d 89 (222)
-...+|||||+| |.||+ +|..++|.++-
T Consensus 354 Php~FSPDgk~VlF~Sd~-~G~~~vY~v~i 382 (386)
T PF14583_consen 354 PHPSFSPDGKWVLFRSDM-EGPPAVYLVEI 382 (386)
T ss_dssp ---EE-TTSSEEEEEE-T-TSS-EEEEEE-
T ss_pred CCCccCCCCCEEEEECCC-CCCccEEEEeC
Confidence 467899999986 57776 88899998853
No 313
>COG4447 Uncharacterized protein related to plant photosystem II stability/assembly factor [General function prediction only]
Probab=23.14 E-value=41 Score=31.71 Aligned_cols=27 Identities=33% Similarity=0.469 Sum_probs=24.4
Q ss_pred CCeeEEECCCCCEEEEE--eCCCCccccc
Q 027522 136 GPQMIQLSLDGKRLYVT--NSLFSAWDCQ 162 (222)
Q Consensus 136 gPr~~~lspdGk~Lyva--Nsl~~~wd~Q 162 (222)
.||.++.+.||+++.|. -|||++|+.-
T Consensus 172 ~~n~ia~s~dng~vaVg~rGs~f~T~~aG 200 (339)
T COG4447 172 VPNEIARSADNGYVAVGARGSFFSTWGAG 200 (339)
T ss_pred hhhhhhhhccCCeEEEecCcceEecCCCC
Confidence 59999999999999986 6899999975
No 314
>KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms]
Probab=23.13 E-value=6.5e+02 Score=28.44 Aligned_cols=18 Identities=17% Similarity=0.001 Sum_probs=15.4
Q ss_pred CeeEEECCCCCEEEEEeC
Q 027522 137 PQMIQLSLDGKRLYVTNS 154 (222)
Q Consensus 137 Pr~~~lspdGk~LyvaNs 154 (222)
--.+++||-|.||...++
T Consensus 1198 vTSi~idp~~~WlviGts 1215 (1431)
T KOG1240|consen 1198 VTSIVIDPWCNWLVIGTS 1215 (1431)
T ss_pred eeEEEecCCceEEEEecC
Confidence 457899999999999983
No 315
>KOG0284 consensus Polyadenylation factor I complex, subunit PFS2 [RNA processing and modification]
Probab=23.10 E-value=2.4e+02 Score=27.93 Aligned_cols=31 Identities=26% Similarity=0.448 Sum_probs=23.0
Q ss_pred CceeEEEEcC-CCCEEEEEeCCCCcEEEEEecCC
Q 027522 58 GLITDFLISL-DDRFLYFSNWLHGDIRQYNIEDP 90 (222)
Q Consensus 58 ~~~adI~iSp-DgrfLYvSnRgh~sI~vf~i~d~ 90 (222)
..+.|+++|| |-+| ++|-.++.|.+|+-..+
T Consensus 181 eaIRdlafSpnDskF--~t~SdDg~ikiWdf~~~ 212 (464)
T KOG0284|consen 181 EAIRDLAFSPNDSKF--LTCSDDGTIKIWDFRMP 212 (464)
T ss_pred hhhheeccCCCCcee--EEecCCCeEEEEeccCC
Confidence 3468999999 4444 56667999999988553
No 316
>COG5170 CDC55 Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]
Probab=22.61 E-value=99 Score=29.83 Aligned_cols=34 Identities=24% Similarity=0.395 Sum_probs=28.1
Q ss_pred CceeEEEEcCCCCEEEEEeCCCCcEEEEEecCCCCC
Q 027522 58 GLITDFLISLDDRFLYFSNWLHGDIRQYNIEDPKNP 93 (222)
Q Consensus 58 ~~~adI~iSpDgrfLYvSnRgh~sI~vf~i~d~~~~ 93 (222)
..++|+.+|+.||++ ..|...++.+|++....+|
T Consensus 281 sSISD~kFs~ngryI--lsRdyltvkiwDvnm~k~p 314 (460)
T COG5170 281 SSISDFKFSDNGRYI--LSRDYLTVKIWDVNMAKNP 314 (460)
T ss_pred hhhcceEEcCCCcEE--EEeccceEEEEecccccCC
Confidence 668999999999965 5688899999999665555
No 317
>PRK15308 putative fimbrial protein TcfA; Provisional
Probab=22.08 E-value=5.8e+02 Score=22.85 Aligned_cols=40 Identities=18% Similarity=0.119 Sum_probs=25.1
Q ss_pred cCCCCeeEEECCCCCEEEEEeCCCCccccccccccccCCcEEEEEEeeCCC
Q 027522 133 LRGGPQMIQLSLDGKRLYVTNSLFSAWDCQFYPELKEKGSHMLQIDVNSEK 183 (222)
Q Consensus 133 ~~ggPr~~~lspdGk~LyvaNsl~~~wd~Q~yp~~~s~~~~i~~~dvd~~~ 183 (222)
|.-.|..|.|-|.++.++-==.+ +- .+....+|+-+|+..
T Consensus 77 LiaSP~~l~L~pg~~q~IRli~l------g~-----~~kE~~YRl~~~pvp 116 (234)
T PRK15308 77 LVVSPEKFALPAGTTRTVRVISL------QA-----PEREEAWRVYFEPVA 116 (234)
T ss_pred EEEcCceeEECCCCeEEEEEEEc------CC-----CCcEEEEEEEEEecC
Confidence 33448899999999977631100 10 246778888777653
No 318
>KOG0302 consensus Ribosome Assembly protein [General function prediction only]
Probab=21.89 E-value=7.8e+02 Score=24.29 Aligned_cols=54 Identities=19% Similarity=0.309 Sum_probs=39.1
Q ss_pred EEEEEeCCCCCeeEEEEEEecCcccccccCCCCCCceeEEEEcCCCCEEEEEeCCCCcEEEEEecC
Q 027522 24 MVRFSKTQDGSWNHEVAISVKSLKVQNWILPEMPGLITDFLISLDDRFLYFSNWLHGDIRQYNIED 89 (222)
Q Consensus 24 V~~~~~d~~g~~~~~q~is~~p~~~~g~~~~~~~~~~adI~iSpDgrfLYvSnRgh~sI~vf~i~d 89 (222)
|..+.+. +|.|+.-++ ++.+.. ...-|+.-||..+-+++||--+++|++|||..
T Consensus 236 I~lw~~~-~g~W~vd~~------Pf~gH~-----~SVEDLqWSptE~~vfaScS~DgsIrIWDiRs 289 (440)
T KOG0302|consen 236 IHLWEPS-TGSWKVDQR------PFTGHT-----KSVEDLQWSPTEDGVFASCSCDGSIRIWDIRS 289 (440)
T ss_pred eEeeeec-cCceeecCc------cccccc-----cchhhhccCCccCceEEeeecCceEEEEEecC
Confidence 5555553 488865553 222221 33568999999999999999999999999944
No 319
>PF07103 DUF1365: Protein of unknown function (DUF1365); InterPro: IPR010775 This family consists of several bacterial and plant proteins of around 250 residues in length. The function of this family is unknown.
Probab=21.59 E-value=4.6e+02 Score=23.54 Aligned_cols=27 Identities=11% Similarity=0.112 Sum_probs=21.9
Q ss_pred EeEEEcCCCCeEEEEeccCce------EEEEEe
Q 027522 3 IRFLHDPSKDIGFVGCALAST------MVRFSK 29 (222)
Q Consensus 3 vr~afhP~g~~aYvv~ELsst------V~~~~~ 29 (222)
+=++|+++|+..+|+.|.+|| ..++..
T Consensus 108 fyyc~d~~~~l~~vvaEV~NTPfgErH~Yvl~~ 140 (254)
T PF07103_consen 108 FYYCYDADGQLRAVVAEVNNTPFGERHCYVLPA 140 (254)
T ss_pred EEEEEcCCCCEEEEEEEEeCCCCCcEEEEEecc
Confidence 447889999999999999999 555554
No 320
>KOG0642 consensus Cell-cycle nuclear protein, contains WD-40 repeats [Cell cycle control, cell division, chromosome partitioning]
Probab=20.89 E-value=6.2e+02 Score=25.92 Aligned_cols=71 Identities=15% Similarity=0.298 Sum_probs=46.0
Q ss_pred EEEcCCCCeEEEEeccCceE--EEEEeC-CCCCeeEEEEEEecCcccccccCCCCCCceeEEEEcCCCCEEEEEeCCCCc
Q 027522 5 FLHDPSKDIGFVGCALASTM--VRFSKT-QDGSWNHEVAISVKSLKVQNWILPEMPGLITDFLISLDDRFLYFSNWLHGD 81 (222)
Q Consensus 5 ~afhP~g~~aYvv~ELsstV--~~~~~d-~~g~~~~~q~is~~p~~~~g~~~~~~~~~~adI~iSpDgrfLYvSnRgh~s 81 (222)
++|||....+..++| ++++ |.+.+. +.+....++..+. .+.. +-.--+.++..+..+|-.. .+|+
T Consensus 300 l~~~~sep~lit~se-d~~lk~WnLqk~~~s~~~~~epi~tf-----raH~-----gPVl~v~v~~n~~~~ysgg-~Dg~ 367 (577)
T KOG0642|consen 300 LAFHPSEPVLITASE-DGTLKLWNLQKAKKSAEKDVEPILTF-----RAHE-----GPVLCVVVPSNGEHCYSGG-IDGT 367 (577)
T ss_pred hhcCCCCCeEEEecc-ccchhhhhhcccCCccccceeeeEEE-----eccc-----CceEEEEecCCceEEEeec-cCce
Confidence 579999999999998 6774 445322 2334444444443 2221 1134578999999999764 4688
Q ss_pred EEEEEe
Q 027522 82 IRQYNI 87 (222)
Q Consensus 82 I~vf~i 87 (222)
|+.|.+
T Consensus 368 I~~w~~ 373 (577)
T KOG0642|consen 368 IRCWNL 373 (577)
T ss_pred eeeecc
Confidence 999966
No 321
>KOG1897 consensus Damage-specific DNA binding complex, subunit DDB1 [Replication, recombination and repair]
Probab=20.71 E-value=1.2e+03 Score=25.88 Aligned_cols=35 Identities=23% Similarity=0.284 Sum_probs=27.2
Q ss_pred CeeEEEC---CCCCEEEEEeCCCCccccccccccccCCcEEEEEEeeCCCCCee
Q 027522 137 PQMIQLS---LDGKRLYVTNSLFSAWDCQFYPELKEKGSHMLQIDVNSEKGGMA 187 (222)
Q Consensus 137 Pr~~~ls---pdGk~LyvaNsl~~~wd~Q~yp~~~s~~~~i~~~dvd~~~G~l~ 187 (222)
||.+-++ -|+.+|+||- +++.++.+-.|..||.+.
T Consensus 583 PRSIl~~~~e~d~~yLlval----------------gdG~l~~fv~d~~tg~ls 620 (1096)
T KOG1897|consen 583 PRSILLTTFEGDIHYLLVAL----------------GDGALLYFVLDINTGQLS 620 (1096)
T ss_pred chheeeEEeeccceEEEEEc----------------CCceEEEEEEEcccceEc
Confidence 8877664 3678999997 478888888888999764
No 322
>KOG1332 consensus Vesicle coat complex COPII, subunit SEC13 [Intracellular trafficking, secretion, and vesicular transport]
Probab=20.40 E-value=5.1e+02 Score=24.23 Aligned_cols=82 Identities=7% Similarity=0.127 Sum_probs=44.2
Q ss_pred EeEEEcCCCCeEEEEeccCceEEEEEeCCCCCeeEEEEEEecCcccc--cccCCCCCCc--eeEEEEcCCCC-EEEEEeC
Q 027522 3 IRFLHDPSKDIGFVGCALASTMVRFSKTQDGSWNHEVAISVKSLKVQ--NWILPEMPGL--ITDFLISLDDR-FLYFSNW 77 (222)
Q Consensus 3 vr~afhP~g~~aYvv~ELsstV~~~~~d~~g~~~~~q~is~~p~~~~--g~~~~~~~~~--~adI~iSpDgr-fLYvSnR 77 (222)
|-++-|--|-.+++.+- +.+|.++.++.+|.|...+....-+-.+. -| .|+. .+.+--.|-.+ .=+||.-
T Consensus 108 V~wapheygl~LacasS-DG~vsvl~~~~~g~w~t~ki~~aH~~GvnsVsw----apa~~~g~~~~~~~~~~~krlvSgG 182 (299)
T KOG1332|consen 108 VAWAPHEYGLLLACASS-DGKVSVLTYDSSGGWTTSKIVFAHEIGVNSVSW----APASAPGSLVDQGPAAKVKRLVSGG 182 (299)
T ss_pred ecccccccceEEEEeeC-CCcEEEEEEcCCCCccchhhhhccccccceeee----cCcCCCccccccCcccccceeeccC
Confidence 34455555555555554 77899999987777776654332222221 01 0011 12222222222 3347777
Q ss_pred CCCcEEEEEecC
Q 027522 78 LHGDIRQYNIED 89 (222)
Q Consensus 78 gh~sI~vf~i~d 89 (222)
.++.|.+|+-++
T Consensus 183 cDn~VkiW~~~~ 194 (299)
T KOG1332|consen 183 CDNLVKIWKFDS 194 (299)
T ss_pred CccceeeeecCC
Confidence 789999998854
No 323
>KOG2395 consensus Protein involved in vacuole import and degradation [Intracellular trafficking, secretion, and vesicular transport]
Probab=20.09 E-value=8.6e+02 Score=25.12 Aligned_cols=17 Identities=24% Similarity=0.397 Sum_probs=15.1
Q ss_pred CeeEEECCCCCEEEEEe
Q 027522 137 PQMIQLSLDGKRLYVTN 153 (222)
Q Consensus 137 Pr~~~lspdGk~LyvaN 153 (222)
--++..|-||||+++|+
T Consensus 474 I~hVdvtadGKwil~Tc 490 (644)
T KOG2395|consen 474 IKHVDVTADGKWILATC 490 (644)
T ss_pred eeeEEeeccCcEEEEec
Confidence 45788999999999999
Done!