BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 027523
         (222 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|2LJK|A Chain A, Solution Structure Of The Oncogenic-Potential Mien1
           Protein
          Length = 117

 Score = 37.4 bits (85), Expect = 0.006,   Method: Compositional matrix adjust.
 Identities = 18/41 (43%), Positives = 27/41 (65%)

Query: 166 LQSFLQSSGAFEVYCNDDLVFSKLKEGRFPGEIELKDLVAK 206
           ++S L  +GAFE+  N  LVFSKL+ G FP E +L + + +
Sbjct: 57  IESRLGGTGAFEIEINGQLVFSKLENGGFPYEKDLIEAIRR 97



 Score = 30.8 bits (68), Expect = 0.64,   Method: Compositional matrix adjust.
 Identities = 9/36 (25%), Positives = 20/36 (55%)

Query: 63 GYGSTVNINFCASCSYRGTAITMKRMLETQFPGIDV 98
          G G  + + +C  C +  T + +   ++ Q+PGI++
Sbjct: 22 GSGVRIVVEYCEPCGFEATYLELASAVKEQYPGIEI 57


>pdb|2P0G|A Chain A, Crystal Structure Of Selenoprotein W-Related Protein From
           Vibrio Cholerae. Northeast Structural Genomics Target
           Vcr75
 pdb|2P0G|B Chain B, Crystal Structure Of Selenoprotein W-Related Protein From
           Vibrio Cholerae. Northeast Structural Genomics Target
           Vcr75
 pdb|2P0G|C Chain C, Crystal Structure Of Selenoprotein W-Related Protein From
           Vibrio Cholerae. Northeast Structural Genomics Target
           Vcr75
 pdb|2P0G|D Chain D, Crystal Structure Of Selenoprotein W-Related Protein From
           Vibrio Cholerae. Northeast Structural Genomics Target
           Vcr75
          Length = 105

 Score = 31.6 bits (70), Expect = 0.35,   Method: Compositional matrix adjust.
 Identities = 20/70 (28%), Positives = 31/70 (44%), Gaps = 12/70 (17%)

Query: 145 YYSLRANRFGSIASTWLIGNFLQSFLQ----------SSGAFEVYCNDDLVFSKLKEGRF 194
           YY  + N    + S WL    L +F +          + G FE++CN   ++ + +EG F
Sbjct: 9   YYCRQCN--WXLRSAWLSQELLHTFSEEIEYVALHPDTGGRFEIFCNGVQIWERKQEGGF 66

Query: 195 PGEIELKDLV 204
           P    LK  V
Sbjct: 67  PEAKVLKQRV 76


>pdb|2FA8|A Chain A, Crystal Structure Of The Putative Selenoprotein W-Related
           Family Protein From Agrobacterium Tumefaciens
 pdb|2FA8|B Chain B, Crystal Structure Of The Putative Selenoprotein W-Related
           Family Protein From Agrobacterium Tumefaciens
 pdb|2FA8|C Chain C, Crystal Structure Of The Putative Selenoprotein W-Related
           Family Protein From Agrobacterium Tumefaciens
 pdb|2FA8|D Chain D, Crystal Structure Of The Putative Selenoprotein W-Related
           Family Protein From Agrobacterium Tumefaciens
          Length = 105

 Score = 28.5 bits (62), Expect = 3.3,   Method: Compositional matrix adjust.
 Identities = 15/67 (22%), Positives = 29/67 (43%), Gaps = 10/67 (14%)

Query: 156 IASTWLIGNFLQSFLQ----------SSGAFEVYCNDDLVFSKLKEGRFPGEIELKDLVA 205
           + + W     LQ+F            + G FE+  +  +++ + ++G FPG  ELK  + 
Sbjct: 22  LRAGWXAQEILQTFASDIGEVSLIPSTGGLFEITVDGTIIWERKRDGGFPGPKELKQRIR 81

Query: 206 KQLASSR 212
             +   R
Sbjct: 82  DLIDPER 88


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.321    0.139    0.430 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 4,987,045
Number of Sequences: 62578
Number of extensions: 172099
Number of successful extensions: 302
Number of sequences better than 100.0: 3
Number of HSP's better than 100.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 298
Number of HSP's gapped (non-prelim): 4
length of query: 222
length of database: 14,973,337
effective HSP length: 95
effective length of query: 127
effective length of database: 9,028,427
effective search space: 1146610229
effective search space used: 1146610229
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 49 (23.5 bits)