BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 027523
(222 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q9STZ2|SELT_ARATH SelT-like protein OS=Arabidopsis thaliana GN=At3g47300 PE=2 SV=2
Length = 209
Score = 298 bits (763), Expect = 2e-80, Method: Compositional matrix adjust.
Identities = 144/210 (68%), Positives = 172/210 (81%), Gaps = 10/210 (4%)
Query: 1 MDRLNILLLGLPLFLLCSDLLNLFTPPPPPPPKSASHHHHKPPIPSENLTPDFPSQKIVG 60
MD+ ++LLGLP+FLLCSDL NLFTPPPP H PP SE L DFP+QK G
Sbjct: 1 MDKTQLILLGLPIFLLCSDLFNLFTPPPP------KSQHQSPPSISETL--DFPAQKSTG 52
Query: 61 GIGYGSTVNINFCASCSYRGTAITMKRMLETQFPGIDVVLANYPPPLPKRLLAKVVPAVQ 120
+GYG+TV INFC SCSY+GTA++MK+MLE+ FPG+DVVLANYP P PKR+LAKVVP Q
Sbjct: 53 -VGYGNTVEINFCISCSYKGTAVSMKKMLESVFPGLDVVLANYPAPAPKRILAKVVPVAQ 111
Query: 121 IGVIGIVVAGEQIFPMLGMT-PPPWYYSLRANRFGSIASTWLIGNFLQSFLQSSGAFEVY 179
+GVIG+++ GEQIFPM+G+ PP WY+SLRANRFGS+ASTWL+GNFLQSFLQSSGAFEV
Sbjct: 112 VGVIGLIMGGEQIFPMIGIAQPPAWYHSLRANRFGSMASTWLLGNFLQSFLQSSGAFEVS 171
Query: 180 CNDDLVFSKLKEGRFPGEIELKDLVAKQLA 209
CN +LVFSKLKEGRFPGEIEL+DL++ +
Sbjct: 172 CNGELVFSKLKEGRFPGEIELRDLISGTMT 201
>sp|Q9BN19|HSP6_HETGL Putative esophageal gland cell secretory protein 6 OS=Heterodera
glycines GN=HSP6 PE=2 SV=1
Length = 244
Score = 103 bits (257), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 52/145 (35%), Positives = 82/145 (56%)
Query: 68 VNINFCASCSYRGTAITMKRMLETQFPGIDVVLANYPPPLPKRLLAKVVPAVQIGVIGIV 127
V +FC SC YR ++L ++PGID+ NYPP + + + A+V+ V+I +I V
Sbjct: 83 VKFSFCVSCGYRQAYEQFAQILREKYPGIDIHGENYPPGILRTVGAQVIGMVKIALIVCV 142
Query: 128 VAGEQIFPMLGMTPPPWYYSLRANRFGSIASTWLIGNFLQSFLQSSGAFEVYCNDDLVFS 187
V+G FP LG+ P ++ + +NR + +L N ++ LQS+GAFE+Y + ++S
Sbjct: 143 VSGRSPFPTLGLETPTFFQWMLSNRLSAALMLFLFSNAIEGMLQSTGAFEIYIESERIWS 202
Query: 188 KLKEGRFPGEIELKDLVAKQLASSR 212
KL+ GR P EL + LA R
Sbjct: 203 KLESGRVPSPPELFQAIDSHLAIRR 227
>sp|Q19892|SELT2_CAEEL Putative selT-like protein F28H7.4 OS=Caenorhabditis elegans
GN=F28H7.4 PE=3 SV=2
Length = 216
Score = 92.4 bits (228), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 59/221 (26%), Positives = 103/221 (46%), Gaps = 14/221 (6%)
Query: 1 MDRLNILLLGLPLFLLCSDLLNLFTPPPPPPPKSA------SHHHHKPPIPSENLTPDFP 54
M R +++GL + + ++F PP + + S IP+ + +
Sbjct: 1 MSRSGAIIIGL---FFIASIFDVFRAEKEPPAEDSRLEDYLSSELETTAIPT-VVNENSH 56
Query: 55 SQKIVGGIGYGS---TVNINFCASCSYRGTAITMKRMLETQFPGIDVVLANYPPPLPKRL 111
SQ +V G+ + I +C SC Y+ + ++PG+ + N+ P K
Sbjct: 57 SQDVVDS-GFSKDLPKLTILYCVSCGYKQAFNQFYEFAKEKYPGLVIEGGNFSPDFWKGC 115
Query: 112 LAKVVPAVQIGVIGIVVAGEQIFPMLGMTPPPWYYSLRANRFGSIASTWLIGNFLQSFLQ 171
LA++V +IG+I IV+ G F +G P + NRF ++IGN +S L
Sbjct: 116 LAQIVGVAKIGLIAIVITGSNPFEYIGFGYPQILQTAHYNRFSYSLLVFMIGNLFESTLS 175
Query: 172 SSGAFEVYCNDDLVFSKLKEGRFPGEIELKDLVAKQLASSR 212
S+GAFE++ D ++SK+ + R P + E +L+ QL + R
Sbjct: 176 STGAFEIFLGDKQIWSKISKERVPTQEEFLNLIDLQLKTIR 216
>sp|Q9VMV6|SELT_DROME SelT-like protein OS=Drosophila melanogaster GN=CG3887 PE=2 SV=1
Length = 198
Score = 88.2 bits (217), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 51/149 (34%), Positives = 79/149 (53%)
Query: 67 TVNINFCASCSYRGTAITMKRMLETQFPGIDVVLANYPPPLPKRLLAKVVPAVQIGVIGI 126
T+ +C SC YR +L ++P I V NY PP L+K++ A++I +I
Sbjct: 43 TMTFLYCYSCGYRKAFEDYVGLLGEKYPQIQVNGGNYDPPGLNYYLSKMIFALKIIIIVS 102
Query: 127 VVAGEQIFPMLGMTPPPWYYSLRANRFGSIASTWLIGNFLQSFLQSSGAFEVYCNDDLVF 186
VV+ F LG+ P W+ ++AN+ + + +GN L++ L SSGAFE+ ND V+
Sbjct: 103 VVSAVSPFTFLGLNTPSWWSHMQANKIYACMMIFFLGNMLEAQLISSGAFEITLNDVPVW 162
Query: 187 SKLKEGRFPGEIELKDLVAKQLASSRLVD 215
SKL+ GRFP L ++ L + V
Sbjct: 163 SKLQTGRFPSPEVLFQIIDNHLQFTEKVQ 191
>sp|Q9U3N5|SELT1_CAEEL Putative selT-like protein C35C5.3 OS=Caenorhabditis elegans
GN=C35C5.3 PE=3 SV=2
Length = 247
Score = 84.0 bits (206), Expect = 7e-16, Method: Compositional matrix adjust.
Identities = 56/231 (24%), Positives = 97/231 (41%), Gaps = 25/231 (10%)
Query: 1 MDRLNILLLGLPLFLLCSDLLNLFTPPPPPPPKSASHHHHKPPIPSENLTPDFPSQKIVG 60
M R + ++G+ F+ D+L T +H H K +E + SQ
Sbjct: 1 MSRFGVFIIGVLFFMSVCDVLR--TVSAEEHSHDENHVHEKDDFEAE-FGDETDSQSFSQ 57
Query: 61 GIGYGS----------------------TVNINFCASCSYRGTAITMKRMLETQFPGIDV 98
G T+ I +C SC Y+ + ++P + +
Sbjct: 58 GTEEDHIEVREQSSFVKPTAVHHAKDLPTLRIFYCVSCGYKQAFDQFTTFAKEKYPNMPI 117
Query: 99 VLANYPPPLPKRLLAKVVPAVQIGVIGIVVAGEQIFPMLGMTPPPWYYSLRANRFGSIAS 158
AN+ P L K +A+ + V++ V+ +V+ G F G+ P N+ S
Sbjct: 118 EGANFAPVLWKAYVAQALSFVKMAVLVLVLGGINPFERFGLGYPQILQHAHGNKMSSCML 177
Query: 159 TWLIGNFLQSFLQSSGAFEVYCNDDLVFSKLKEGRFPGEIELKDLVAKQLA 209
+++GN ++ L S+GAFEVY ++ ++SK++ GR P E L+ QLA
Sbjct: 178 VFMLGNLVEQSLISTGAFEVYLGNEQIWSKIESGRVPSPQEFMQLIDAQLA 228
>sp|Q502K9|SELT2_DANRE Selenoprotein T2 OS=Danio rerio GN=selt2 PE=2 SV=3
Length = 210
Score = 73.9 bits (180), Expect = 8e-13, Method: Compositional matrix adjust.
Identities = 46/168 (27%), Positives = 75/168 (44%), Gaps = 1/168 (0%)
Query: 46 SENLTPDFPSQKIVGGIGY-GSTVNINFCASCSYRGTAITMKRMLETQFPGIDVVLANYP 104
EN PD +Q+ Y G + +C S Y R + +P I + NYP
Sbjct: 34 QENTGPDINTQRQNKHTFYTGPVLKFQYCISUGYSKVFQEYSRSISQLYPDIRIEGDNYP 93
Query: 105 PPLPKRLLAKVVPAVQIGVIGIVVAGEQIFPMLGMTPPPWYYSLRANRFGSIASTWLIGN 164
P + L + ++ I ++V G+ F M GM P + + N+ S + I N
Sbjct: 94 PKPINKYLGNFLSYFKLLAIALIVTGQNPFQMFGMNTPRIWAWGQENKIFSCLMAFFISN 153
Query: 165 FLQSFLQSSGAFEVYCNDDLVFSKLKEGRFPGEIELKDLVAKQLASSR 212
L++ S+GAFE+ ND ++SKL+ G P EL ++ L ++
Sbjct: 154 MLETHFLSTGAFEITLNDIPIWSKLQSGYVPNIQELFQILDNHLKMNQ 201
>sp|Q6PBD1|SELT_XENTR Selenoprotein T OS=Xenopus tropicalis GN=selt PE=2 SV=3
Length = 201
Score = 72.8 bits (177), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 41/165 (24%), Positives = 79/165 (47%)
Query: 53 FPSQKIVGGIGYGSTVNINFCASCSYRGTAITMKRMLETQFPGIDVVLANYPPPLPKRLL 112
PS+K+ G + C S YR R++ ++P I + NY P R +
Sbjct: 31 LPSKKLKMQYTAGPLLKFQICVSUGYRRVFEDYMRVISQRYPDIRIEGENYLPHPIYRNI 90
Query: 113 AKVVPAVQIGVIGIVVAGEQIFPMLGMTPPPWYYSLRANRFGSIASTWLIGNFLQSFLQS 172
A + ++ +IG+++AG+ F GM P + + N+ + + + N +++ S
Sbjct: 91 ASFLSVFKLVLIGLIIAGKDPFAFFGMQAPSVWQWGQENKVYACMMVFFVSNMIENQCMS 150
Query: 173 SGAFEVYCNDDLVFSKLKEGRFPGEIELKDLVAKQLASSRLVDGV 217
+GAFE+ ND V+SKL+ G P +L ++ ++ + +D +
Sbjct: 151 TGAFEITLNDVPVWSKLESGHLPSVQQLVQIIDNEMKLNVHMDAI 195
>sp|Q1H5H1|SELT_RAT Selenoprotein T OS=Rattus norvegicus GN=Selt PE=2 SV=2
Length = 195
Score = 70.5 bits (171), Expect = 9e-12, Method: Compositional matrix adjust.
Identities = 39/164 (23%), Positives = 78/164 (47%)
Query: 54 PSQKIVGGIGYGSTVNINFCASCSYRGTAITMKRMLETQFPGIDVVLANYPPPLPKRLLA 113
PS+++ G + C S YR R++ ++P I + NY P R +A
Sbjct: 27 PSKRLKMQYATGPLLKFQICVSUGYRRVFEEYMRVISQRYPDIRIEGENYLPQPIYRHIA 86
Query: 114 KVVPAVQIGVIGIVVAGEQIFPMLGMTPPPWYYSLRANRFGSIASTWLIGNFLQSFLQSS 173
+ ++ +IG+++ G+ F GM P + + N+ + + + N +++ S+
Sbjct: 87 SFLSVFKLVLIGLIIVGKDPFAFFGMQAPSIWQWGQENKVYACMMVFFLSNMIENQCMST 146
Query: 174 GAFEVYCNDDLVFSKLKEGRFPGEIELKDLVAKQLASSRLVDGV 217
GAFE+ ND V+SKL+ G P +L ++ ++ + +D +
Sbjct: 147 GAFEITLNDVPVWSKLESGHLPSMQQLVQILDNEMKLNVHMDSI 190
>sp|P62342|SELT_MOUSE Selenoprotein T OS=Mus musculus GN=Selt PE=2 SV=2
Length = 195
Score = 70.5 bits (171), Expect = 9e-12, Method: Compositional matrix adjust.
Identities = 39/164 (23%), Positives = 78/164 (47%)
Query: 54 PSQKIVGGIGYGSTVNINFCASCSYRGTAITMKRMLETQFPGIDVVLANYPPPLPKRLLA 113
PS+++ G + C S YR R++ ++P I + NY P R +A
Sbjct: 27 PSKRLKMQYATGPLLKFQICVSUGYRRVFEEYMRVISQRYPDIRIEGENYLPQPIYRHIA 86
Query: 114 KVVPAVQIGVIGIVVAGEQIFPMLGMTPPPWYYSLRANRFGSIASTWLIGNFLQSFLQSS 173
+ ++ +IG+++ G+ F GM P + + N+ + + + N +++ S+
Sbjct: 87 SFLSVFKLVLIGLIIVGKDPFAFFGMQAPSIWQWGQENKVYACMMVFFLSNMIENQCMST 146
Query: 174 GAFEVYCNDDLVFSKLKEGRFPGEIELKDLVAKQLASSRLVDGV 217
GAFE+ ND V+SKL+ G P +L ++ ++ + +D +
Sbjct: 147 GAFEITLNDVPVWSKLESGHLPSMQQLVQILDNEMKLNVHMDSI 190
>sp|P62341|SELT_HUMAN Selenoprotein T OS=Homo sapiens GN=SELT PE=2 SV=2
Length = 195
Score = 70.1 bits (170), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 39/164 (23%), Positives = 78/164 (47%)
Query: 54 PSQKIVGGIGYGSTVNINFCASCSYRGTAITMKRMLETQFPGIDVVLANYPPPLPKRLLA 113
PS+++ G + C S YR R++ ++P I + NY P R +A
Sbjct: 27 PSKRLKMQYATGPLLKFQICVSUGYRRVFEEYMRVISQRYPDIRIEGENYLPQPIYRHIA 86
Query: 114 KVVPAVQIGVIGIVVAGEQIFPMLGMTPPPWYYSLRANRFGSIASTWLIGNFLQSFLQSS 173
+ ++ +IG+++ G+ F GM P + + N+ + + + N +++ S+
Sbjct: 87 SFLSVFKLVLIGLIIVGKDPFAFFGMQAPSIWQWGQENKVYACMMVFFLSNMIENQCMST 146
Query: 174 GAFEVYCNDDLVFSKLKEGRFPGEIELKDLVAKQLASSRLVDGV 217
GAFE+ ND V+SKL+ G P +L ++ ++ + +D +
Sbjct: 147 GAFEITLNDVPVWSKLESGHLPSMQQLVQILDNEMKLNVHMDSI 190
>sp|Q5ZJN8|SELT_CHICK Selenoprotein T OS=Gallus gallus GN=SELT PE=2 SV=3
Length = 199
Score = 70.1 bits (170), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 38/155 (24%), Positives = 74/155 (47%)
Query: 54 PSQKIVGGIGYGSTVNINFCASCSYRGTAITMKRMLETQFPGIDVVLANYPPPLPKRLLA 113
P++K+ G + C S YR R++ ++P I + NY P R +A
Sbjct: 31 PAKKLRMAYATGPLLKFQICVSUGYRRVFEEYMRVISQRYPDIRIEGENYLPQPIYRHIA 90
Query: 114 KVVPAVQIGVIGIVVAGEQIFPMLGMTPPPWYYSLRANRFGSIASTWLIGNFLQSFLQSS 173
+ ++ +IG+++ G+ F GM P + + N+ + + + N +++ S+
Sbjct: 91 SFLSVFKLVLIGLIIVGKDPFAFFGMQAPSIWQWGQENKVYACMMVFFLSNMIENQCMST 150
Query: 174 GAFEVYCNDDLVFSKLKEGRFPGEIELKDLVAKQL 208
GAFE+ ND V+SKL+ G P +L ++ ++
Sbjct: 151 GAFEITLNDVPVWSKLESGHLPSMQQLVQILDNEM 185
>sp|A6QP01|SELT_BOVIN Selenoprotein T OS=Bos taurus GN=SELT PE=2 SV=2
Length = 195
Score = 68.9 bits (167), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 38/164 (23%), Positives = 77/164 (46%)
Query: 54 PSQKIVGGIGYGSTVNINFCASCSYRGTAITMKRMLETQFPGIDVVLANYPPPLPKRLLA 113
P +++ G + C S YR R++ ++P I + NY P R +A
Sbjct: 27 PGKRLKMQYATGPLLKFQICVSUGYRRVFEEYMRVISQRYPDIRIEGENYLPQPIYRHIA 86
Query: 114 KVVPAVQIGVIGIVVAGEQIFPMLGMTPPPWYYSLRANRFGSIASTWLIGNFLQSFLQSS 173
+ ++ +IG+++ G+ F GM P + + N+ + + + N +++ S+
Sbjct: 87 SFLSVFKLVLIGLIIVGKDPFAFFGMQAPSIWQWGQENKVYACMMVFFLSNMIENQCMST 146
Query: 174 GAFEVYCNDDLVFSKLKEGRFPGEIELKDLVAKQLASSRLVDGV 217
GAFE+ ND V+SKL+ G P +L ++ ++ + +D +
Sbjct: 147 GAFEITLNDVPVWSKLESGHLPSMQQLVQILDNEMKLNVHMDSI 190
>sp|Q6PHY8|SELTB_DANRE Selenoprotein T1b OS=Danio rerio GN=selt1b PE=2 SV=3
Length = 193
Score = 66.2 bits (160), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 38/150 (25%), Positives = 72/150 (48%)
Query: 68 VNINFCASCSYRGTAITMKRMLETQFPGIDVVLANYPPPLPKRLLAKVVPAVQIGVIGIV 127
+ C S YR R+L ++P I + N+ P R +A + ++ VIG++
Sbjct: 39 LKFQICVSUGYRRVFEEYTRVLTQRYPDIRIEGENFLPQPLYRHIASFLSVFKLVVIGLI 98
Query: 128 VAGEQIFPMLGMTPPPWYYSLRANRFGSIASTWLIGNFLQSFLQSSGAFEVYCNDDLVFS 187
+ G+ F L + P + + N+ + + + N +++ S+GAFEV ND V+S
Sbjct: 99 ILGKNPFTYLHIETPGIWLWAQENKIYACTMVFFLSNMIENQCMSTGAFEVTLNDVPVWS 158
Query: 188 KLKEGRFPGEIELKDLVAKQLASSRLVDGV 217
KL+ G P +L ++ ++ S +D +
Sbjct: 159 KLQSGHLPSMQQLVQILENEMKLSVHMDSL 188
>sp|Q802F2|SELTA_DANRE Selenoprotein T1a OS=Danio rerio GN=selt1a PE=2 SV=3
Length = 193
Score = 65.5 bits (158), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 38/160 (23%), Positives = 74/160 (46%)
Query: 56 QKIVGGIGYGSTVNINFCASCSYRGTAITMKRMLETQFPGIDVVLANYPPPLPKRLLAKV 115
+K+ G + C S Y+ + L ++P I + NY P R +A
Sbjct: 27 KKMKMQFATGPLLKFQICVSUGYKRVFEEYTQALYQRYPDIRIEGENYLPLPLYRHIASF 86
Query: 116 VPAVQIGVIGIVVAGEQIFPMLGMTPPPWYYSLRANRFGSIASTWLIGNFLQSFLQSSGA 175
+ ++ +IG+++ G+ F + GM P + + N+ + + N +++ S+GA
Sbjct: 87 LSMFKLLLIGVIILGKDPFALCGMQAPGIWVWSQENKIYACMMVFFFSNMIENQCMSTGA 146
Query: 176 FEVYCNDDLVFSKLKEGRFPGEIELKDLVAKQLASSRLVD 215
FE+ ND V+SKL+ G P +L ++ ++ S +D
Sbjct: 147 FEITLNDVPVWSKLESGHLPSMQQLVQILENEMKMSMHMD 186
>sp|Q148C8|MIEN1_BOVIN Migration and invasion enhancer 1 OS=Bos taurus GN=MIEN1 PE=3 SV=1
Length = 115
Score = 38.1 bits (87), Expect = 0.048, Method: Compositional matrix adjust.
Identities = 18/41 (43%), Positives = 27/41 (65%)
Query: 166 LQSFLQSSGAFEVYCNDDLVFSKLKEGRFPGEIELKDLVAK 206
++S L +GAFE+ N LVFSKL+ G FP E +L + + +
Sbjct: 55 IESRLGGTGAFEIEINGQLVFSKLENGGFPYEKDLIEAIRR 95
Score = 32.0 bits (71), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 9/36 (25%), Positives = 21/36 (58%)
Query: 63 GYGSTVNINFCASCSYRGTAITMKRMLETQFPGIDV 98
G+G + + +C C + T + + ++ Q+PGI++
Sbjct: 20 GHGVRIVVEYCEPCGFEATYLELASAVKEQYPGIEI 55
>sp|Q9CQ86|MIEN1_MOUSE Migration and invasion enhancer 1 OS=Mus musculus GN=Mien1 PE=1
SV=1
Length = 115
Score = 38.1 bits (87), Expect = 0.053, Method: Compositional matrix adjust.
Identities = 18/41 (43%), Positives = 27/41 (65%)
Query: 166 LQSFLQSSGAFEVYCNDDLVFSKLKEGRFPGEIELKDLVAK 206
++S L +GAFE+ N LVFSKL+ G FP E +L + + +
Sbjct: 55 IESRLGGTGAFEIEINGQLVFSKLENGGFPYEKDLMEAIRR 95
>sp|Q9BRT3|MIEN1_HUMAN Migration and invasion enhancer 1 OS=Homo sapiens GN=MIEN1 PE=1
SV=1
Length = 115
Score = 37.7 bits (86), Expect = 0.059, Method: Compositional matrix adjust.
Identities = 18/41 (43%), Positives = 27/41 (65%)
Query: 166 LQSFLQSSGAFEVYCNDDLVFSKLKEGRFPGEIELKDLVAK 206
++S L +GAFE+ N LVFSKL+ G FP E +L + + +
Sbjct: 55 IESRLGGTGAFEIEINGQLVFSKLENGGFPYEKDLIEAIRR 95
>sp|O14787|TNPO2_HUMAN Transportin-2 OS=Homo sapiens GN=TNPO2 PE=1 SV=3
Length = 897
Score = 35.4 bits (80), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 37/123 (30%), Positives = 49/123 (39%), Gaps = 31/123 (25%)
Query: 43 PIPSENLTPDFPSQKIVGGIGYGSTVNINFCASCSYRGTAITMKRMLETQFPGIDVVLAN 102
PI NL P+F I+ C + ++ I M+ E Q P + +VL N
Sbjct: 708 PILGTNLNPEF----------------ISVCNNATWAIGEICMQMGAEMQ-PYVQMVLNN 750
Query: 103 Y-----PPPLPKRLLAKV--------VPAVQIGVIGIVVAGEQIFPMLGMTPPPWYYSLR 149
P PK LL +PA+ IG +G V E + PML PW SLR
Sbjct: 751 LVEIINRPNTPKTLLENTGRLTSPSAIPAITIGRLGYVCPQE-VAPMLQQFIRPWCTSLR 809
Query: 150 ANR 152
R
Sbjct: 810 NIR 812
>sp|Q99LG2|TNPO2_MOUSE Transportin-2 OS=Mus musculus GN=Tnpo2 PE=2 SV=1
Length = 887
Score = 34.3 bits (77), Expect = 0.75, Method: Compositional matrix adjust.
Identities = 36/115 (31%), Positives = 47/115 (40%), Gaps = 25/115 (21%)
Query: 43 PIPSENLTPDFPSQKIVGGIGYGSTVNINFCASCSYRGTAITMKRMLETQFPGIDVVLAN 102
PI NL P+F I+ C + ++ I M+ E Q P + +VL N
Sbjct: 708 PILGTNLNPEF----------------ISVCNNATWAIGEICMQMGAEMQ-PYVQMVLNN 750
Query: 103 Y-----PPPLPKRLLAKVVPAVQIGVIGIVVAGEQIFPMLGMTPPPWYYSLRANR 152
P PK LL A+ IG +G V E + PML PW SLR R
Sbjct: 751 LVEIINRPNTPKTLLENT--AITIGRLGYVCPQE-VAPMLQQFIRPWCTSLRNIR 802
>sp|Q8BFY9|TNPO1_MOUSE Transportin-1 OS=Mus musculus GN=Tnpo1 PE=1 SV=2
Length = 898
Score = 32.3 bits (72), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 39/130 (30%), Positives = 52/130 (40%), Gaps = 31/130 (23%)
Query: 34 SASHHHHKP------PIPSENLTPDFPSQKIVGGIGYGSTVNINFCASCSYRGTAITMKR 87
A H KP PI NL P+F I+ C + ++ I+++
Sbjct: 704 KACFQHVKPCIADFMPILGTNLNPEF----------------ISVCNNATWAIGEISIQM 747
Query: 88 MLETQFPGIDVVLANY-----PPPLPKRLLAKVVPAVQIGVIGIVVAGEQIFPMLGMTPP 142
+E Q P I +VL P PK LL A+ IG +G V E + PML
Sbjct: 748 GIEMQ-PYIPMVLHQLVEIINRPNTPKTLLENT--AITIGRLGYVCPQE-VAPMLQQFIR 803
Query: 143 PWYYSLRANR 152
PW SLR R
Sbjct: 804 PWCTSLRNIR 813
>sp|Q92973|TNPO1_HUMAN Transportin-1 OS=Homo sapiens GN=TNPO1 PE=1 SV=2
Length = 898
Score = 32.3 bits (72), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 39/130 (30%), Positives = 52/130 (40%), Gaps = 31/130 (23%)
Query: 34 SASHHHHKP------PIPSENLTPDFPSQKIVGGIGYGSTVNINFCASCSYRGTAITMKR 87
A H KP PI NL P+F I+ C + ++ I+++
Sbjct: 704 KACFQHVKPCIADFMPILGTNLNPEF----------------ISVCNNATWAIGEISIQM 747
Query: 88 MLETQFPGIDVVLANY-----PPPLPKRLLAKVVPAVQIGVIGIVVAGEQIFPMLGMTPP 142
+E Q P I +VL P PK LL A+ IG +G V E + PML
Sbjct: 748 GIEMQ-PYIPMVLHQLVEIINRPNTPKTLLENT--AITIGRLGYVCPQE-VAPMLQQFIR 803
Query: 143 PWYYSLRANR 152
PW SLR R
Sbjct: 804 PWCTSLRNIR 813
>sp|Q3SYU7|TNPO1_BOVIN Transportin-1 OS=Bos taurus GN=TNPO1 PE=2 SV=2
Length = 898
Score = 32.3 bits (72), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 39/130 (30%), Positives = 52/130 (40%), Gaps = 31/130 (23%)
Query: 34 SASHHHHKP------PIPSENLTPDFPSQKIVGGIGYGSTVNINFCASCSYRGTAITMKR 87
A H KP PI NL P+F I+ C + ++ I+++
Sbjct: 704 KACFQHVKPCIADFMPILGTNLNPEF----------------ISVCNNATWAIGEISIQM 747
Query: 88 MLETQFPGIDVVLANY-----PPPLPKRLLAKVVPAVQIGVIGIVVAGEQIFPMLGMTPP 142
+E Q P I +VL P PK LL A+ IG +G V E + PML
Sbjct: 748 GIEMQ-PYIPMVLHQLVEIINRPNTPKTLLENT--AITIGRLGYVCPQE-VAPMLQQFIR 803
Query: 143 PWYYSLRANR 152
PW SLR R
Sbjct: 804 PWCTSLRNIR 813
>sp|Q9ZBL0|THIC_MYCLE Phosphomethylpyrimidine synthase OS=Mycobacterium leprae (strain
TN) GN=thiC PE=3 SV=1
Length = 547
Score = 32.0 bits (71), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 18/50 (36%), Positives = 30/50 (60%), Gaps = 3/50 (6%)
Query: 151 NRFGSIASTWLIGNFLQSFLQSSGA--FEVYCNDDLVFSKLKEGRFPGEI 198
+R GSI ++W + N +SFL ++ A +++ D+ FS L +G PG I
Sbjct: 264 SRGGSIMASWCLANHRESFLYTNFAELCDIFARYDVTFS-LGDGLRPGSI 312
>sp|B8ZU90|THIC_MYCLB Phosphomethylpyrimidine synthase OS=Mycobacterium leprae (strain
Br4923) GN=thiC PE=3 SV=1
Length = 547
Score = 32.0 bits (71), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 18/50 (36%), Positives = 30/50 (60%), Gaps = 3/50 (6%)
Query: 151 NRFGSIASTWLIGNFLQSFLQSSGA--FEVYCNDDLVFSKLKEGRFPGEI 198
+R GSI ++W + N +SFL ++ A +++ D+ FS L +G PG I
Sbjct: 264 SRGGSIMASWCLANHRESFLYTNFAELCDIFARYDVTFS-LGDGLRPGSI 312
>sp|B8IHZ7|RSMG_METNO Ribosomal RNA small subunit methyltransferase G OS=Methylobacterium
nodulans (strain ORS2060 / LMG 21967) GN=rsmG PE=3 SV=1
Length = 212
Score = 32.0 bits (71), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 18/55 (32%), Positives = 27/55 (49%), Gaps = 1/55 (1%)
Query: 92 QFPGIDVVLANYPPPLPKRLLAKVVPAVQIGVIGIVVAGEQIFPMLGMTPPPWYY 146
+F G++VV A PLP+ LLA P ++ G IG+ G + L W +
Sbjct: 133 RFTGVEVVCARALAPLPQ-LLAWTAPLLKSGTIGLFPKGREAQSELTAARETWTF 186
>sp|B0UJI7|RSMG_METS4 Ribosomal RNA small subunit methyltransferase G OS=Methylobacterium
sp. (strain 4-46) GN=rsmG PE=3 SV=1
Length = 212
Score = 30.8 bits (68), Expect = 6.9, Method: Compositional matrix adjust.
Identities = 18/54 (33%), Positives = 26/54 (48%), Gaps = 1/54 (1%)
Query: 93 FPGIDVVLANYPPPLPKRLLAKVVPAVQIGVIGIVVAGEQIFPMLGMTPPPWYY 146
F G+DVV A PLP+ L+A P ++ G IG+ G + L W +
Sbjct: 134 FRGVDVVCARALAPLPQ-LIAWTAPLLKSGTIGLFPKGREAQSELTAAREKWTF 186
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.322 0.141 0.442
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 94,003,757
Number of Sequences: 539616
Number of extensions: 4273960
Number of successful extensions: 31010
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 98
Number of HSP's successfully gapped in prelim test: 80
Number of HSP's that attempted gapping in prelim test: 28701
Number of HSP's gapped (non-prelim): 1845
length of query: 222
length of database: 191,569,459
effective HSP length: 113
effective length of query: 109
effective length of database: 130,592,851
effective search space: 14234620759
effective search space used: 14234620759
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 59 (27.3 bits)