Query 027523
Match_columns 222
No_of_seqs 164 out of 458
Neff 4.5
Searched_HMMs 46136
Date Fri Mar 29 11:12:25 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/027523.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/027523hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG3286 Selenoprotein T [Gener 100.0 2.5E-70 5.5E-75 471.7 16.0 217 1-217 1-221 (226)
2 PF10262 Rdx: Rdx family; Int 99.9 3.2E-24 7E-29 158.3 7.9 74 66-207 1-76 (76)
3 TIGR02174 CXXU_selWTH selT/sel 99.9 4.7E-23 1E-27 151.5 8.8 72 68-205 1-72 (72)
4 COG3526 Uncharacterized protei 99.6 2.6E-15 5.6E-20 115.4 6.9 62 157-218 21-92 (99)
5 PF07293 DUF1450: Protein of u 77.7 15 0.00033 27.8 7.2 32 172-211 44-75 (78)
6 PRK13669 hypothetical protein; 75.2 15 0.00033 28.0 6.6 33 171-211 43-75 (78)
7 COG3526 Uncharacterized protei 71.4 3.9 8.5E-05 32.1 2.6 30 66-95 6-35 (99)
8 PRK09727 his operon leader pep 67.5 2.7 5.7E-05 25.5 0.8 9 36-44 8-16 (26)
9 PF13192 Thioredoxin_3: Thiore 63.8 8.7 0.00019 27.6 3.1 24 178-205 53-76 (76)
10 PF07315 DUF1462: Protein of u 61.2 7.2 0.00016 30.7 2.3 27 72-98 8-38 (93)
11 TIGR01159 DRP1 density-regulat 60.9 6 0.00013 34.2 2.0 29 68-96 2-37 (173)
12 PF09960 DUF2194: Uncharacteri 50.2 34 0.00073 34.7 5.6 32 176-207 440-471 (585)
13 KOG3239 Density-regulated prot 47.2 13 0.00028 32.7 1.9 36 69-104 11-55 (193)
14 TIGR00412 redox_disulf_2 small 44.8 21 0.00046 25.5 2.5 27 173-205 50-76 (76)
15 PF14099 Polysacc_lyase: Polys 44.3 16 0.00036 30.8 2.1 25 172-196 167-191 (224)
16 KOG2480 3-hydroxy-3-methylglut 44.2 47 0.001 33.7 5.5 84 63-202 349-441 (602)
17 PF06953 ArsD: Arsenical resis 43.6 32 0.00069 28.1 3.6 32 177-212 75-106 (123)
18 PF03808 Glyco_tran_WecB: Glyc 40.7 57 0.0012 27.1 4.8 31 69-101 50-80 (172)
19 PF07287 DUF1446: Protein of u 40.4 1.5E+02 0.0032 28.4 8.1 92 82-204 150-262 (362)
20 PF10411 DsbC_N: Disulfide bon 40.2 34 0.00075 23.8 2.9 19 172-190 22-41 (57)
21 PF07800 DUF1644: Protein of u 37.4 27 0.00058 30.1 2.3 29 69-97 108-136 (162)
22 KOG2550 IMP dehydrogenase/GMP 36.8 34 0.00075 33.9 3.2 31 73-103 270-300 (503)
23 PF08141 SspH: Small acid-solu 36.6 50 0.0011 23.8 3.3 18 171-188 11-28 (58)
24 PF07172 GRP: Glycine rich pro 36.5 32 0.00069 26.8 2.4 22 1-22 1-25 (95)
25 PRK13728 conjugal transfer pro 36.0 2.9E+02 0.0062 23.9 8.9 101 68-210 73-173 (181)
26 PF14424 Toxin-deaminase: The 36.0 26 0.00057 28.7 2.0 24 70-99 105-128 (133)
27 cd03715 RT_ZFREV_like RT_ZFREV 34.6 33 0.00072 28.9 2.5 18 174-191 154-171 (210)
28 PF02767 DNA_pol3_beta_2: DNA 32.8 49 0.0011 25.5 3.0 25 172-196 92-116 (116)
29 COG4837 Uncharacterized protei 32.5 28 0.0006 27.9 1.5 27 72-98 15-45 (106)
30 PRK10739 putative antibiotic t 31.6 31 0.00067 30.0 1.8 44 101-144 29-72 (197)
31 PF01106 NifU: NifU-like domai 28.1 1.5E+02 0.0032 21.4 4.6 31 66-96 27-62 (68)
32 PRK14494 putative molybdopteri 28.1 81 0.0018 28.1 3.9 49 72-122 152-209 (229)
33 PRK14946 DNA polymerase III su 27.9 71 0.0015 30.0 3.7 28 174-201 218-245 (366)
34 PF01914 MarC: MarC family int 27.7 39 0.00084 29.3 1.8 44 101-144 29-72 (203)
35 cd00304 RT_like RT_like: Rever 27.4 1.9E+02 0.0042 20.6 5.2 33 172-209 39-71 (98)
36 PF09526 DUF2387: Probable met 26.9 35 0.00075 25.4 1.1 16 66-81 26-41 (71)
37 PLN02304 probable pectinestera 26.8 69 0.0015 30.9 3.4 19 73-91 78-96 (379)
38 PF08531 Bac_rhamnosid_N: Alph 26.4 54 0.0012 27.3 2.4 18 171-188 11-28 (172)
39 PRK00366 ispG 4-hydroxy-3-meth 26.0 72 0.0016 30.7 3.3 89 67-207 265-356 (360)
40 cd07287 PX_RPK118_like The pho 25.6 40 0.00086 27.0 1.3 40 72-112 38-77 (118)
41 PF04457 DUF504: Protein of un 25.6 45 0.00097 23.4 1.5 16 173-188 40-56 (56)
42 COG2126 RPL37A Ribosomal prote 25.3 32 0.00069 25.2 0.7 14 67-80 28-41 (61)
43 cd07286 PX_SNX18 The phosphoin 24.5 40 0.00086 27.6 1.2 27 81-112 40-66 (127)
44 KOG1819 FYVE finger-containing 24.1 32 0.0007 35.1 0.7 17 202-218 788-804 (990)
45 COG2215 ABC-type uncharacteriz 24.0 1.2E+02 0.0027 28.5 4.4 19 6-24 139-157 (303)
46 PF11208 DUF2992: Protein of u 24.0 1.9E+02 0.0042 23.8 5.1 44 174-217 12-55 (132)
47 smart00776 NPCBM This novel pu 23.9 70 0.0015 26.4 2.6 17 172-188 83-99 (145)
48 cd06861 PX_Vps5p The phosphoin 23.5 47 0.001 25.8 1.4 29 80-113 44-72 (112)
49 cd01647 RT_LTR RT_LTR: Reverse 23.3 35 0.00076 26.2 0.6 21 173-193 120-140 (177)
50 cd03023 DsbA_Com1_like DsbA fa 23.2 3.3E+02 0.0072 20.5 12.1 41 66-106 7-47 (154)
51 TIGR02861 SASP_H small acid-so 22.4 1.1E+02 0.0024 22.0 3.0 17 171-187 11-27 (58)
52 PF03226 Yippee-Mis18: Yippee 22.4 38 0.00083 25.4 0.7 27 66-93 53-85 (96)
53 PF05265 DUF723: Protein of un 22.2 1.1E+02 0.0023 22.4 2.9 26 79-104 2-30 (60)
54 cd06533 Glyco_transf_WecG_TagA 22.0 1.1E+02 0.0024 25.4 3.4 32 68-101 47-78 (171)
55 PF13684 Dak1_2: Dihydroxyacet 21.9 1.2E+02 0.0027 27.9 4.0 33 66-99 265-297 (313)
56 PRK06673 DNA polymerase III su 21.9 1E+02 0.0022 28.9 3.5 24 178-201 230-253 (376)
57 COG3809 Uncharacterized protei 21.7 69 0.0015 24.9 1.9 29 66-96 17-49 (88)
58 PRK09335 30S ribosomal protein 21.6 45 0.00097 26.5 0.9 16 66-81 63-78 (95)
59 TIGR00427 membrane protein, Ma 21.5 60 0.0013 28.2 1.8 44 101-144 32-75 (201)
60 cd06865 PX_SNX_like The phosph 21.4 65 0.0014 25.4 1.8 28 80-112 49-76 (120)
61 PRK14942 DNA polymerase III su 21.3 1.2E+02 0.0026 28.5 3.8 21 180-200 234-254 (373)
62 cd01645 RT_Rtv RT_Rtv: Reverse 21.2 71 0.0015 27.2 2.1 31 175-205 159-189 (213)
63 PF08544 GHMP_kinases_C: GHMP 20.7 1.7E+02 0.0037 20.4 3.8 31 61-95 55-85 (85)
64 PRK14944 DNA polymerase III su 20.6 1.2E+02 0.0027 28.4 3.8 23 178-200 229-251 (375)
65 cd06881 PX_SNX15_like The phos 20.5 53 0.0011 25.8 1.1 32 81-113 46-77 (117)
66 cd06867 PX_SNX41_42 The phosph 20.4 85 0.0018 24.3 2.3 32 77-114 33-64 (112)
No 1
>KOG3286 consensus Selenoprotein T [General function prediction only]
Probab=100.00 E-value=2.5e-70 Score=471.67 Aligned_cols=217 Identities=40% Similarity=0.706 Sum_probs=193.6
Q ss_pred CcchhHHHHHHHHHHHhhhhhhccCCCCCCCCCCCCCCCCCCCCC-CCCCCCCCCCcc---cccccCCccEEEEEecCCC
Q 027523 1 MDRLNILLLGLPLFLLCSDLLNLFTPPPPPPPKSASHHHHKPPIP-SENLTPDFPSQK---IVGGIGYGSTVNINFCASC 76 (222)
Q Consensus 1 ~~~~~~~~~g~~~~~~~~d~~~~f~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~---~~~~~~~g~tV~i~YC~sC 76 (222)
|||+|++++|||+|++|||+|++|+|+.+.--++.|+|.++..-| ..++..+++.|| ..++++.|+||+|+||+||
T Consensus 1 M~r~~~iiiGl~~f~~~~Dvf~~~tp~e~s~e~h~~~~~~~~~~p~~~~e~~~~~g~ke~gv~~~~~~~ptl~i~fCvSC 80 (226)
T KOG3286|consen 1 MSRFGLIIIGLPFFLSCSDVFRLFTPPEHSDENHQSPKDDFEAEPDEIDETSFAQGQKESGVGKHIKYGPTLEINFCVSC 80 (226)
T ss_pred CCccceeeehhHHHHHHHHHHHccCCCcccccccCCCCccccccccccchhcccCcccccCcccccccCCcEEEEEEEec
Confidence 999999999999999999999999944432111111121121122 677899999999 3346789999999999999
Q ss_pred CchhhHHHHHHHHHHhCCCceeecccCCCChHHHHHHhhhhHHHHHHHHHHhhccccccccCCCChhhHhhhhcchhhHH
Q 027523 77 SYRGTAITMKRMLETQFPGIDVVLANYPPPLPKRLLAKVVPAVQIGVIGIVVAGEQIFPMLGMTPPPWYYSLRANRFGSI 156 (222)
Q Consensus 77 gY~~~f~~lk~~L~~~yP~i~V~G~nYPpp~~k~~Lak~v~~~q~~~i~~i~~G~~iF~~lG~~~P~w~~~~~~NK~~~~ 156 (222)
|||++|++++++|+++||+++|+|+|||||+||++|||+++++|+++|++|+.|+++|+++|+++|+||++.+.||+++|
T Consensus 81 gYk~af~~~~~~l~ekyPgl~IegaNy~Pp~~kr~lAk~v~v~k~gvIglii~G~~pF~~iGl~~P~iwqh~~aNkf~sc 160 (226)
T KOG3286|consen 81 GYKQAFEQYKKFLKEKYPGLDIEGANYPPPAWKRYLAKVVSVVKMGVIGLIIGGKNPFEFIGLGYPSIWQHAQANKFYSC 160 (226)
T ss_pred CcHHHHHHHHHHHHhhCCCceeecCcCCCchHHHHHHHHHHHHhheeEEEEeccCCccceecCCCcHHHHHHHhhhHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhhhhccCCCcEEEEEECCeEeEeeeccCCCCChhHHHHHHHHHhcCCCCCCCc
Q 027523 157 ASTWLIGNFLQSFLQSSGAFEVYCNDDLVFSKLKEGRFPGEIELKDLVAKQLASSRLVDGV 217 (222)
Q Consensus 157 ~~~~~~~n~l~~~l~stGaFEV~vng~LV~SKl~~grfP~~~EL~~~I~~~l~~~~~~~~~ 217 (222)
|++||+||++|++++|||||||++||++||||+++||+|+++|+.|+|++.+...+.+...
T Consensus 161 m~vf~lGN~les~L~StGAFEI~lndepVwSKl~~gr~Ps~~el~qlid~~L~~~~~~~~~ 221 (226)
T KOG3286|consen 161 MMVFFLGNMLESQLISTGAFEITLNDEPVWSKLESGRLPSPQELVQLIDNQLKLNVKLPGN 221 (226)
T ss_pred HHHHHHHHHHHHHhhccCcEEEEECCEeeeehhhccCCCCHHHHHHHHHHhhhheeecCCC
Confidence 9999999999999999999999999999999999999999999999999998777666543
No 2
>PF10262 Rdx: Rdx family; InterPro: IPR011893 This entry represents the Rdx family of selenoproteins, which includes mammalian selenoproteins SelW, SelV, SelT and SelH, bacterial SelW-like proteins and cysteine-containing proteins of unknown function in all three domains of life. Mammalian Rdx12 and its fish selenoprotein orthologues are also members of this family []. These proteins possess a thioredoxin-like fold and a conserved CXXC or CxxU (U is selenocysteine) motif near the N terminus, suggesting a redox function. Rdx proteins can use catalytic cysteine (or selenocysteine) to form transient mixed disulphides with substrate proteins. Selenium (Se) plays an essential role in cell survival and most of the effects of Se are probably mediated by selenoproteins. Selenoprotein W (SelW) plays an important role in protection of neurons from oxidative stress during neuronal development [], []. Selenoprotein T (SelT) is conserved from plants to humans. SelT is localized to the endoplasmic reticulum through a hydrophobic domain. The protein binds to UDP-glucose:glycoprotein glucosyltransferase (UGTR), the endoplasmic reticulum (ER)-resident protein, which is known to be involved in the quality control of protein folding [, ]. The function of SelT is unknown, although it may have a role in PACAP signaling during PC12 cell differentiation [, ]. Selenoprotein H (SelH) protects neurons against UVB-induced damage by inhibiting apoptotic cell death pathways, by preventing mitochondrial depolarization, and by promoting cell survival pathways [].; GO: 0008430 selenium binding, 0045454 cell redox homeostasis; PDB: 2OJL_B 2FA8_A 2P0G_C 2NPB_A 3DEX_C 2OKA_A 2OBK_G.
Probab=99.90 E-value=3.2e-24 Score=158.26 Aligned_cols=74 Identities=42% Similarity=0.754 Sum_probs=67.0
Q ss_pred cEEEEEecCCCCchhhHHHHHHHHHHhCCC--ceeecccCCCChHHHHHHhhhhHHHHHHHHHHhhccccccccCCCChh
Q 027523 66 STVNINFCASCSYRGTAITMKRMLETQFPG--IDVVLANYPPPLPKRLLAKVVPAVQIGVIGIVVAGEQIFPMLGMTPPP 143 (222)
Q Consensus 66 ~tV~i~YC~sCgY~~~f~~lk~~L~~~yP~--i~V~G~nYPpp~~k~~Lak~v~~~q~~~i~~i~~G~~iF~~lG~~~P~ 143 (222)
++|+|+||.+|||+++|.++++.|+++||+ .+|++
T Consensus 1 p~V~IeYC~~C~~~~~a~~l~~~l~~~fp~~~~~v~~------------------------------------------- 37 (76)
T PF10262_consen 1 PKVTIEYCTSCGYRPRALELAQELLQTFPDRIAEVEL------------------------------------------- 37 (76)
T ss_dssp EEEEEEEETTTTCHHHHHHHHHHHHHHSTTTCSEEEE-------------------------------------------
T ss_pred CEEEEEECCCCCCHHHHHHHHHHHHHHCCCcceEEEE-------------------------------------------
Confidence 589999999999999999999999999999 67764
Q ss_pred hHhhhhcchhhHHHHHHHHHHhhhhccCCCcEEEEEECCeEeEeeeccCCCCChhHHHHHHHHH
Q 027523 144 WYYSLRANRFGSIASTWLIGNFLQSFLQSSGAFEVYCNDDLVFSKLKEGRFPGEIELKDLVAKQ 207 (222)
Q Consensus 144 w~~~~~~NK~~~~~~~~~~~n~l~~~l~stGaFEV~vng~LV~SKl~~grfP~~~EL~~~I~~~ 207 (222)
.+.++|+|||++||++||||+++||||+.+||+++|+++
T Consensus 38 -------------------------~~~~~G~FEV~v~g~lI~SK~~~g~fP~~~~i~~~I~~~ 76 (76)
T PF10262_consen 38 -------------------------SPGSTGAFEVTVNGELIFSKLESGRFPDPDEIVQLIRDH 76 (76)
T ss_dssp -------------------------EEESTT-EEEEETTEEEEEHHHHTSSS-HHHHHHHHHHH
T ss_pred -------------------------EeccCCEEEEEEccEEEEEehhcCCCCCHHHHHHHHhcC
Confidence 246899999999999999999999999999999999985
No 3
>TIGR02174 CXXU_selWTH selT/selW/selH selenoprotein domain. This model represents a domain found in both bacteria and animals, including animal proteins SelT, SelW, and SelH, all of which are selenoproteins. In a CXXC motif near the N-terminus of the domain, selenocysteine may replace the second Cys. Proteins with this domain may include an insert of about 70 amino acids. This model is broader than the current SelW model pfam05169 in Pfam.
Probab=99.89 E-value=4.7e-23 Score=151.46 Aligned_cols=72 Identities=42% Similarity=0.729 Sum_probs=66.0
Q ss_pred EEEEecCCCCchhhHHHHHHHHHHhCCCceeecccCCCChHHHHHHhhhhHHHHHHHHHHhhccccccccCCCChhhHhh
Q 027523 68 VNINFCASCSYRGTAITMKRMLETQFPGIDVVLANYPPPLPKRLLAKVVPAVQIGVIGIVVAGEQIFPMLGMTPPPWYYS 147 (222)
Q Consensus 68 V~i~YC~sCgY~~~f~~lk~~L~~~yP~i~V~G~nYPpp~~k~~Lak~v~~~q~~~i~~i~~G~~iF~~lG~~~P~w~~~ 147 (222)
|+|+||.+|||+.+|.++++.|+++||+..++++++
T Consensus 1 V~IeyC~~C~y~~Ra~~l~q~L~~~Fp~~~v~~~~~-------------------------------------------- 36 (72)
T TIGR02174 1 VEIEYCGSCGYKPRAAWLKQELLEEFPDLEIEGENT-------------------------------------------- 36 (72)
T ss_pred CEEEECCCCCChHHHHHHHHHHHHHCCCCeeEEeee--------------------------------------------
Confidence 689999999999999999999999999987766433
Q ss_pred hhcchhhHHHHHHHHHHhhhhccCCCcEEEEEECCeEeEeeeccCCCCChhHHHHHHH
Q 027523 148 LRANRFGSIASTWLIGNFLQSFLQSSGAFEVYCNDDLVFSKLKEGRFPGEIELKDLVA 205 (222)
Q Consensus 148 ~~~NK~~~~~~~~~~~n~l~~~l~stGaFEV~vng~LV~SKl~~grfP~~~EL~~~I~ 205 (222)
..++|+|||++||++||||+++|+||+.+||+++|+
T Consensus 37 ----------------------~~~~G~Fev~~~g~~v~sk~~~~~fp~~~~~~~~ir 72 (72)
T TIGR02174 37 ----------------------PPTTGAFEVTVNGQLVWSKLRGGGFPEPEELKQLIR 72 (72)
T ss_pred ----------------------cCCCcEEEEEECCEEEEEeccCCCCCCHHHHHHhhC
Confidence 347999999999999999999999999999999985
No 4
>COG3526 Uncharacterized protein conserved in bacteria [Posttranslational modification, protein turnover, chaperones]
Probab=99.59 E-value=2.6e-15 Score=115.42 Aligned_cols=62 Identities=26% Similarity=0.595 Sum_probs=59.0
Q ss_pred HHHHHHHHhhhhccC----------CCcEEEEEECCeEeEeeeccCCCCChhHHHHHHHHHhcCCCCCCCcC
Q 027523 157 ASTWLIGNFLQSFLQ----------SSGAFEVYCNDDLVFSKLKEGRFPGEIELKDLVAKQLASSRLVDGVG 218 (222)
Q Consensus 157 ~~~~~~~n~l~~~l~----------stGaFEV~vng~LV~SKl~~grfP~~~EL~~~I~~~l~~~~~~~~~~ 218 (222)
-++||+||+|++|.. ++|.|||++||.+||.++.+|+||++++|+|+||+.++|+|++||+.
T Consensus 21 Ra~WmaQElL~TF~~dlgeV~L~PgTGG~FeI~~dg~~iWeRKrdGGFP~ak~LKQrvRD~idPeRDLGH~D 92 (99)
T COG3526 21 RAAWMAQELLSTFADDLGEVALIPGTGGVFEITCDGVLIWERKRDGGFPEAKVLKQRVRDLIDPERDLGHVD 92 (99)
T ss_pred HHHHHHHHHHHHHHhhhheEEEecCCCceEEEEECCEEEEEeeccCCCCchHHHHHHHHhhcCcccccCCCC
Confidence 478999999999875 79999999999999999999999999999999999999999999886
No 5
>PF07293 DUF1450: Protein of unknown function (DUF1450); InterPro: IPR009910 This entry consists of several hypothetical bacterial proteins of around 80 residues in length representing two families. Members contain four highly conserved cysteine residues and their function is unknown.
Probab=77.69 E-value=15 Score=27.84 Aligned_cols=32 Identities=16% Similarity=0.280 Sum_probs=25.5
Q ss_pred CCcEEEEEECCeEeEeeeccCCCCChhHHHHHHHHHhcCC
Q 027523 172 SSGAFEVYCNDDLVFSKLKEGRFPGEIELKDLVAKQLASS 211 (222)
Q Consensus 172 stGaFEV~vng~LV~SKl~~grfP~~~EL~~~I~~~l~~~ 211 (222)
....|- +|||+.|. =++++||.+.|.+++...
T Consensus 44 ~~~pFA-lVnG~~V~-------A~t~eeL~~kI~~~i~e~ 75 (78)
T PF07293_consen 44 AKKPFA-LVNGEIVA-------AETAEELLEKIKEKIEEN 75 (78)
T ss_pred CCCccE-EECCEEEe-------cCCHHHHHHHHHHHHhcc
Confidence 566674 58999996 359999999999998654
No 6
>PRK13669 hypothetical protein; Provisional
Probab=75.16 E-value=15 Score=27.99 Aligned_cols=33 Identities=24% Similarity=0.231 Sum_probs=26.2
Q ss_pred CCCcEEEEEECCeEeEeeeccCCCCChhHHHHHHHHHhcCC
Q 027523 171 QSSGAFEVYCNDDLVFSKLKEGRFPGEIELKDLVAKQLASS 211 (222)
Q Consensus 171 ~stGaFEV~vng~LV~SKl~~grfP~~~EL~~~I~~~l~~~ 211 (222)
-+.+.|- +|||+.|. =++++||.+.|.+++...
T Consensus 43 C~~~~FA-lVng~~V~-------a~t~eeL~~kI~~~i~e~ 75 (78)
T PRK13669 43 CSEGLFA-LVNGEVVE-------GETPEELVENIYAHLEEN 75 (78)
T ss_pred cccCceE-EECCeEee-------cCCHHHHHHHHHHHHhhc
Confidence 3667775 58999986 359999999999998653
No 7
>COG3526 Uncharacterized protein conserved in bacteria [Posttranslational modification, protein turnover, chaperones]
Probab=71.37 E-value=3.9 Score=32.10 Aligned_cols=30 Identities=23% Similarity=0.527 Sum_probs=26.0
Q ss_pred cEEEEEecCCCCchhhHHHHHHHHHHhCCC
Q 027523 66 STVNINFCASCSYRGTAITMKRMLETQFPG 95 (222)
Q Consensus 66 ~tV~i~YC~sCgY~~~f~~lk~~L~~~yP~ 95 (222)
+.+.|.||+-|...-+.-=+++.|.+.|-+
T Consensus 6 p~i~I~YCtQCnWlLRa~WmaQElL~TF~~ 35 (99)
T COG3526 6 PRIEITYCTQCNWLLRAAWMAQELLSTFAD 35 (99)
T ss_pred ceEEEEEechhhHHHHHHHHHHHHHHHHHh
Confidence 578999999999888888888888888744
No 8
>PRK09727 his operon leader peptide; Provisional
Probab=67.45 E-value=2.7 Score=25.52 Aligned_cols=9 Identities=56% Similarity=1.003 Sum_probs=3.8
Q ss_pred CCCCCCCCC
Q 027523 36 SHHHHKPPI 44 (222)
Q Consensus 36 ~~~~~~~~~ 44 (222)
||||||||+
T Consensus 8 hhhhhhhpd 16 (26)
T PRK09727 8 HHHHHHHPD 16 (26)
T ss_pred ccccccCCC
Confidence 334444454
No 9
>PF13192 Thioredoxin_3: Thioredoxin domain; PDB: 1ZYP_B 1ZYN_A 1HYU_A 1ILO_A 1J08_F 2YWM_B 2AYT_B 2HLS_B 1A8L_A 2K8S_B ....
Probab=63.82 E-value=8.7 Score=27.56 Aligned_cols=24 Identities=42% Similarity=0.728 Sum_probs=18.0
Q ss_pred EEECCeEeEeeeccCCCCChhHHHHHHH
Q 027523 178 VYCNDDLVFSKLKEGRFPGEIELKDLVA 205 (222)
Q Consensus 178 V~vng~LV~SKl~~grfP~~~EL~~~I~ 205 (222)
+.+||+++|+ |+.|+.+||.++|.
T Consensus 53 lvIng~~~~~----G~~p~~~el~~~l~ 76 (76)
T PF13192_consen 53 LVINGKVVFV----GRVPSKEELKELLE 76 (76)
T ss_dssp EEETTEEEEE----SS--HHHHHHHHHH
T ss_pred EEECCEEEEE----ecCCCHHHHHHHhC
Confidence 4679998875 77999999998874
No 10
>PF07315 DUF1462: Protein of unknown function (DUF1462); InterPro: IPR009190 There are currently no experimental data for members of this group of bacterial proteins or their homologues. A crystal structure of Q7A6J8 from SWISSPROT revealed a thioredoxin-like fold, its core consisting of three layers alpha/beta/alpha.; PDB: 1XG8_A.
Probab=61.19 E-value=7.2 Score=30.74 Aligned_cols=27 Identities=26% Similarity=0.509 Sum_probs=20.7
Q ss_pred ecCCCC----chhhHHHHHHHHHHhCCCcee
Q 027523 72 FCASCS----YRGTAITMKRMLETQFPGIDV 98 (222)
Q Consensus 72 YC~sCg----Y~~~f~~lk~~L~~~yP~i~V 98 (222)
-|.||- -+.+|+=|+.+|..|||+..+
T Consensus 8 ~CASCVn~PsSkeTyeWL~aal~RKyp~~~f 38 (93)
T PF07315_consen 8 ICASCVNAPSSKETYEWLEAALKRKYPDQPF 38 (93)
T ss_dssp --GGGSSS--HHHHHHHHHHHHHHH-TTS-E
T ss_pred cchhhcCCCCchhHHHHHHHHHhCcCCCCce
Confidence 499994 788999999999999999854
No 11
>TIGR01159 DRP1 density-regulated protein DRP1. This protein family shows weak but suggestive similarity to translation initiation factor SUI1 and its prokaryotic homologs.
Probab=60.89 E-value=6 Score=34.15 Aligned_cols=29 Identities=21% Similarity=0.429 Sum_probs=23.6
Q ss_pred EEEEecCCCCchhhH-------HHHHHHHHHhCCCc
Q 027523 68 VNINFCASCSYRGTA-------ITMKRMLETQFPGI 96 (222)
Q Consensus 68 V~i~YC~sCgY~~~f-------~~lk~~L~~~yP~i 96 (222)
++|.||.-|++-..| ..=+.-|++.+|++
T Consensus 2 ~~V~YCgvCs~P~EyCEf~~~~~kCk~WL~~n~p~l 37 (173)
T TIGR01159 2 LRVLYCGVCSLPPEYCEFSGDLKRCKVWLSENAPDL 37 (173)
T ss_pred ceeEECCCCCCchHHhcCCCCHHHHHHHHHHhChHH
Confidence 589999999966555 55588899999986
No 12
>PF09960 DUF2194: Uncharacterized protein conserved in bacteria (DUF2194); InterPro: IPR018695 This family of prokaryotic proteins has no known function; however it may be a membrane protein.
Probab=50.23 E-value=34 Score=34.74 Aligned_cols=32 Identities=22% Similarity=0.450 Sum_probs=29.1
Q ss_pred EEEEECCeEeEeeeccCCCCChhHHHHHHHHH
Q 027523 176 FEVYCNDDLVFSKLKEGRFPGEIELKDLVAKQ 207 (222)
Q Consensus 176 FEV~vng~LV~SKl~~grfP~~~EL~~~I~~~ 207 (222)
|||.=||...+=|..+|..|+..++...+...
T Consensus 440 F~~~~dgi~e~PRisSG~~~~~~~~~~~~s~l 471 (585)
T PF09960_consen 440 FEIAPDGIVEFPRISSGYYPDDYMLWAIVSAL 471 (585)
T ss_pred eeECCCCeEEeCccccCCccChHHHHHHHHHH
Confidence 89988888889999999999999999998875
No 13
>KOG3239 consensus Density-regulated protein related to translation initiation factor 1 (eIF-1/SUI1) [General function prediction only]
Probab=47.22 E-value=13 Score=32.68 Aligned_cols=36 Identities=22% Similarity=0.477 Sum_probs=27.4
Q ss_pred EEEecCCCCchhhHHHH-------HHHHHHhCCCc--eeecccCC
Q 027523 69 NINFCASCSYRGTAITM-------KRMLETQFPGI--DVVLANYP 104 (222)
Q Consensus 69 ~i~YC~sCgY~~~f~~l-------k~~L~~~yP~i--~V~G~nYP 104 (222)
++.||.-|+|-..|=++ +..|++.+|++ ...+++=|
T Consensus 11 ~vlYCGvCSlP~EYCEf~~~~~kCk~WL~~n~pdly~kL~~e~~~ 55 (193)
T KOG3239|consen 11 SVLYCGVCSLPPEYCEFSGDLKKCKEWLEENHPDLYAKLYGEDDP 55 (193)
T ss_pred ceEEeeccCCCHHHHHccccHHHHHHHHHhcChhHHHhhhcccCh
Confidence 78999999977776554 78899999996 45555544
No 14
>TIGR00412 redox_disulf_2 small redox-active disulfide protein 2. This small protein is found in three archaeal species so far (Methanococcus jannaschii, Archeoglobus fulgidus, and Methanobacterium thermoautotrophicum) as well as in Anabaena PCC7120. It is homologous to thioredoxins, glutaredoxins, and protein disulfide isomerases, and shares with them a redox-active disulfide. The redox active disulfide region CXXC motif resembles neither thioredoxin nor glutaredoxin. A closely related protein found in the same three Archaea, described by redox_disulf_1, has a glutaredoxin-like CP[YH]C sequence; it has been characterized in functional assays as redox-active but unlikely to be a thioredoxin or glutaredoxin.
Probab=44.80 E-value=21 Score=25.55 Aligned_cols=27 Identities=26% Similarity=0.562 Sum_probs=19.6
Q ss_pred CcEEEEEECCeEeEeeeccCCCCChhHHHHHHH
Q 027523 173 SGAFEVYCNDDLVFSKLKEGRFPGEIELKDLVA 205 (222)
Q Consensus 173 tGaFEV~vng~LV~SKl~~grfP~~~EL~~~I~ 205 (222)
.=++.| ||+++ -+|+.|+.+++.+.++
T Consensus 50 vPti~i--~G~~~----~~G~~~~~~~l~~~l~ 76 (76)
T TIGR00412 50 TPGVAV--DGELV----IMGKIPSKEEIKEILK 76 (76)
T ss_pred CCEEEE--CCEEE----EEeccCCHHHHHHHhC
Confidence 334555 99988 4466888889888763
No 15
>PF14099 Polysacc_lyase: Polysaccharide lyase; PDB: 3ILR_A 3IKW_A 3INA_A 3IMN_A 3IN9_A 2ZZJ_A.
Probab=44.35 E-value=16 Score=30.83 Aligned_cols=25 Identities=28% Similarity=0.367 Sum_probs=20.0
Q ss_pred CCcEEEEEECCeEeEeeeccCCCCC
Q 027523 172 SSGAFEVYCNDDLVFSKLKEGRFPG 196 (222)
Q Consensus 172 stGaFEV~vng~LV~SKl~~grfP~ 196 (222)
++|.+||++||++|++......+++
T Consensus 167 ~~G~~~vw~nG~~v~~~~g~~~~~~ 191 (224)
T PF14099_consen 167 SDGFLEVWLNGKLVVDYKGPTGYND 191 (224)
T ss_dssp CTEEEEEEECCEECCEEEEEECECC
T ss_pred CCEEEEEEECCEEEEEEeCCceeCC
Confidence 6899999999999998776444443
No 16
>KOG2480 consensus 3-hydroxy-3-methylglutaryl-CoA (HMG-CoA) reductase [Lipid transport and metabolism]
Probab=44.21 E-value=47 Score=33.70 Aligned_cols=84 Identities=24% Similarity=0.328 Sum_probs=61.8
Q ss_pred CCccEEEEEecCCCC-------chhhHHHHHHHHHHhCCCceeec--ccCCCChHHHHHHhhhhHHHHHHHHHHhhcccc
Q 027523 63 GYGSTVNINFCASCS-------YRGTAITMKRMLETQFPGIDVVL--ANYPPPLPKRLLAKVVPAVQIGVIGIVVAGEQI 133 (222)
Q Consensus 63 ~~g~tV~i~YC~sCg-------Y~~~f~~lk~~L~~~yP~i~V~G--~nYPpp~~k~~Lak~v~~~q~~~i~~i~~G~~i 133 (222)
=.|..+-+.||.+-| ..+..+..-+++.++||+.+|.+ .||
T Consensus 349 iaG~~lyiRF~~~TGDAMGMNMISKgve~~l~~l~~~fpdM~vi~iSGNy------------------------------ 398 (602)
T KOG2480|consen 349 IAGRNLYIRFCTSTGDAMGMNMISKGVENALRFLSEEFPDMQVISISGNY------------------------------ 398 (602)
T ss_pred eecceeEEEEEeccccchhhhhHHHHHHHHHHHHHHhCCCceEEEeccCc------------------------------
Confidence 356788889999887 46777888899999999998764 344
Q ss_pred ccccCCCChhhHhhhhcchhhHHHHHHHHHHhhhhccCCCcEEEEEECCeEeEeeeccCCCCChhHHHH
Q 027523 134 FPMLGMTPPPWYYSLRANRFGSIASTWLIGNFLQSFLQSSGAFEVYCNDDLVFSKLKEGRFPGEIELKD 202 (222)
Q Consensus 134 F~~lG~~~P~w~~~~~~NK~~~~~~~~~~~n~l~~~l~stGaFEV~vng~LV~SKl~~grfP~~~EL~~ 202 (222)
|.++|..++ |++++- +++=.=|-.+.|+.|=+-|.+ +.+.|++
T Consensus 399 --------------CtDKKpAAi-------NWieGR-GKsVV~Ea~Ip~~vvr~VLkt----~v~aLve 441 (602)
T KOG2480|consen 399 --------------CTDKKPAAI-------NWIEGR-GKSVVAEATIPGEVVRKVLKT----TVEALVE 441 (602)
T ss_pred --------------ccCCchHhh-------hhhccC-CceEEEEEeccHHHHHHHHcc----CHHHHHH
Confidence 778888776 666652 344556778899998888886 4455544
No 17
>PF06953 ArsD: Arsenical resistance operon trans-acting repressor ArsD; InterPro: IPR010712 This family consists of several bacterial arsenical resistance operon trans-acting repressor ArsD proteins. ArsD is a trans-acting repressor of the arsRDABC operon that confers resistance to arsenicals and antimonials in Escherichia coli. It possesses two-pairs of vicinal cysteine residues, Cys(12)-Cys(13) and Cys(112)-Cys(113), that potentially form separate binding sites for the metalloids that trigger dissociation of ArsD from the operon. However, as a homodimer it has four vicinal cysteine pairs [].; GO: 0003677 DNA binding, 0045892 negative regulation of transcription, DNA-dependent, 0046685 response to arsenic-containing substance; PDB: 3MWH_A 3KGK_A 3KTB_B.
Probab=43.59 E-value=32 Score=28.08 Aligned_cols=32 Identities=19% Similarity=0.391 Sum_probs=20.8
Q ss_pred EEEECCeEeEeeeccCCCCChhHHHHHHHHHhcCCC
Q 027523 177 EVYCNDDLVFSKLKEGRFPGEIELKDLVAKQLASSR 212 (222)
Q Consensus 177 EV~vng~LV~SKl~~grfP~~~EL~~~I~~~l~~~~ 212 (222)
-+.|||++|. +|++|+.+||.+...-.....+
T Consensus 75 itlVdGeiv~----~G~YPt~eEl~~~~~i~~~~~~ 106 (123)
T PF06953_consen 75 ITLVDGEIVK----TGRYPTNEELAEWLGISFSELE 106 (123)
T ss_dssp EEEETTEEEE----ESS---HHHHHHHHT--GGGTT
T ss_pred EEEECCEEEE----ecCCCCHHHHHHHhCCCccccc
Confidence 4578999986 4899999999998876554443
No 18
>PF03808 Glyco_tran_WecB: Glycosyl transferase WecB/TagA/CpsF family; InterPro: IPR004629 The WecG member of this superfamily, believed to be UDP-N-acetyl-D-mannosaminuronic acid transferase, plays a role in Enterobacterial common antigen (eca) synthesis in Escherichia coli. Another family member, the Bacillus subtilis TagA protein, is involved in the biosynthesis of the cell wall polymer poly(glycerol phosphate). The third family member, CpsF, CMP-N-acetylneuraminic acid synthetase has a role in the capsular polysaccharide biosynthesis pathway.; GO: 0009058 biosynthetic process
Probab=40.67 E-value=57 Score=27.14 Aligned_cols=31 Identities=16% Similarity=0.238 Sum_probs=24.5
Q ss_pred EEEecCCCCchhhHHHHHHHHHHhCCCceeecc
Q 027523 69 NINFCASCSYRGTAITMKRMLETQFPGIDVVLA 101 (222)
Q Consensus 69 ~i~YC~sCgY~~~f~~lk~~L~~~yP~i~V~G~ 101 (222)
+|.+..+. ....++.++.|+++||+++|.|.
T Consensus 50 ~ifllG~~--~~~~~~~~~~l~~~yP~l~ivg~ 80 (172)
T PF03808_consen 50 RIFLLGGS--EEVLEKAAANLRRRYPGLRIVGY 80 (172)
T ss_pred eEEEEeCC--HHHHHHHHHHHHHHCCCeEEEEe
Confidence 44444443 67888999999999999999984
No 19
>PF07287 DUF1446: Protein of unknown function (DUF1446); InterPro: IPR010839 This family consists of several bacterial and plant proteins of around 400 residues in length. The function of this family is unknown.
Probab=40.45 E-value=1.5e+02 Score=28.36 Aligned_cols=92 Identities=17% Similarity=0.156 Sum_probs=65.7
Q ss_pred HHHHHHHHHHhCCCceeecccCCCChHHHHHHhhhhHHHHHHHHHHhhccccccccCCCChhhHhhhhcchhhHHHHHHH
Q 027523 82 AITMKRMLETQFPGIDVVLANYPPPLPKRLLAKVVPAVQIGVIGIVVAGEQIFPMLGMTPPPWYYSLRANRFGSIASTWL 161 (222)
Q Consensus 82 f~~lk~~L~~~yP~i~V~G~nYPpp~~k~~Lak~v~~~q~~~i~~i~~G~~iF~~lG~~~P~w~~~~~~NK~~~~~~~~~ 161 (222)
.+-+.+.|++- +++.|.|--|.++++-.. +-|+.-....-+-....+|.
T Consensus 150 a~pI~~AL~~G-ADIVI~GR~~D~Al~~a~------------------------------~~~~~GW~~~d~d~la~a~~ 198 (362)
T PF07287_consen 150 AEPIVEALEAG-ADIVITGRVADPALFAAP------------------------------AIHEFGWSEDDYDRLAGATH 198 (362)
T ss_pred hHHHHHHHHcC-CCEEEeCcccchHHHHhH------------------------------HHHHcCCCccchhhhhHHHh
Confidence 45667777776 899899987777654322 22332222334555678899
Q ss_pred HHHhhhhccCCCc--------------------EEEEEECCeEeEeeec-cCCCCChhHHHHHH
Q 027523 162 IGNFLQSFLQSSG--------------------AFEVYCNDDLVFSKLK-EGRFPGEIELKDLV 204 (222)
Q Consensus 162 ~~n~l~~~l~stG--------------------aFEV~vng~LV~SKl~-~grfP~~~EL~~~I 204 (222)
+|-++|+-.+-|| .-||.-||.-+-+|.+ +|+.-++..+.+.+
T Consensus 199 aGhllECgaq~TGg~f~~~~~~~v~~~~~~G~piaev~~DG~~~Itk~~~tgg~vt~~TV~aql 262 (362)
T PF07287_consen 199 AGHLLECGAQATGGNFSDPGWKDVPDLANLGFPIAEVDADGSFVITKPPGTGGRVTPDTVAAQL 262 (362)
T ss_pred hhhhhhcCCcccCCCcCCcccccCCCcccCCCcEEEEecCCcEEEEecCCCCCcCchhHHHHHH
Confidence 9999998877443 5578889999999998 89999998887654
No 20
>PF10411 DsbC_N: Disulfide bond isomerase protein N-terminus; InterPro: IPR018950 This is the N-terminal domain of the disulphide bond isomerase DsbC. The whole molecule is V-shaped, where each arm is a DsbC monomer of two domains linked by a hinge; and the N-termini of each monomer join to form the dimer interface at the base of the V, so are vital for dimerisation []. DsbC is required for disulphide bond formation and functions as a disulphide bond isomerase during oxidative protein-folding in bacterial periplasm. It also has chaperone activity []. ; PDB: 1EEJ_B 2IYJ_A 1TJD_A 1JZD_B 1JZO_A 1G0T_B 1T3B_A.
Probab=40.16 E-value=34 Score=23.78 Aligned_cols=19 Identities=16% Similarity=0.370 Sum_probs=15.2
Q ss_pred CCcEEEEEE-CCeEeEeeec
Q 027523 172 SSGAFEVYC-NDDLVFSKLK 190 (222)
Q Consensus 172 stGaFEV~v-ng~LV~SKl~ 190 (222)
-.|-+||.+ ||.++|.--.
T Consensus 22 i~GlyeV~~~~~~i~Y~~~d 41 (57)
T PF10411_consen 22 IPGLYEVVLKGGGILYVDED 41 (57)
T ss_dssp STTEEEEEE-TTEEEEEETT
T ss_pred CCCeEEEEECCCeEEEEcCC
Confidence 478999999 9988886544
No 21
>PF07800 DUF1644: Protein of unknown function (DUF1644); InterPro: IPR012866 This family consists of sequences found in a number of hypothetical plant proteins of unknown function. The region of interest contains nine highly conserved cysteine residues and is approximately 160 amino acids in length, which probably represent a zinc-binding domain.
Probab=37.36 E-value=27 Score=30.11 Aligned_cols=29 Identities=21% Similarity=0.385 Sum_probs=24.8
Q ss_pred EEEecCCCCchhhHHHHHHHHHHhCCCce
Q 027523 69 NINFCASCSYRGTAITMKRMLETQFPGID 97 (222)
Q Consensus 69 ~i~YC~sCgY~~~f~~lk~~L~~~yP~i~ 97 (222)
+-=-+.+|.|.++|.||++.++.+.|..+
T Consensus 108 RsC~~e~C~F~GtY~eLrKHar~~HP~~r 136 (162)
T PF07800_consen 108 RSCSQESCSFSGTYSELRKHARSEHPSAR 136 (162)
T ss_pred ccCcccccccccCHHHHHHHHHhhCCCCC
Confidence 33346789999999999999999999974
No 22
>KOG2550 consensus IMP dehydrogenase/GMP reductase [Nucleotide transport and metabolism]
Probab=36.79 E-value=34 Score=33.90 Aligned_cols=31 Identities=13% Similarity=0.280 Sum_probs=27.3
Q ss_pred cCCCCchhhHHHHHHHHHHhCCCceeecccC
Q 027523 73 CASCSYRGTAITMKRMLETQFPGIDVVLANY 103 (222)
Q Consensus 73 C~sCgY~~~f~~lk~~L~~~yP~i~V~G~nY 103 (222)
=+|-|+.--+.++-++++++||+++|.|.|-
T Consensus 270 DSSqGnS~~qiemik~iK~~yP~l~ViaGNV 300 (503)
T KOG2550|consen 270 DSSQGNSIYQLEMIKYIKETYPDLQIIAGNV 300 (503)
T ss_pred ecCCCcchhHHHHHHHHHhhCCCceeeccce
Confidence 4678899999999999999999999988653
No 23
>PF08141 SspH: Small acid-soluble spore protein H family; InterPro: IPR012610 This family consists of the small acid-soluble spore proteins (SASP) of the H type (sspH). SspH are unique to spores of Bacillus subtilis and are expressed only in the forespore compartment during sporulation of this organism. The sspH genes are monocistronic and are recognised by the forespore-specific sigma factor for RNA polymerase - sigma-G. The specific role of this protein is unclear but is thought to play a role in sporulation under conditions different from that of the common laboratory tests of spore properties [].; GO: 0030436 asexual sporulation, 0042601 endospore-forming forespore
Probab=36.61 E-value=50 Score=23.78 Aligned_cols=18 Identities=28% Similarity=0.268 Sum_probs=15.3
Q ss_pred CCCcEEEEEECCeEeEee
Q 027523 171 QSSGAFEVYCNDDLVFSK 188 (222)
Q Consensus 171 ~stGaFEV~vng~LV~SK 188 (222)
.|....+|++||+.||=+
T Consensus 11 ~S~~~i~V~y~G~pV~Ie 28 (58)
T PF08141_consen 11 ESPDMIEVTYNGVPVWIE 28 (58)
T ss_pred cCCceEEEEECCEEEEEE
Confidence 478889999999999943
No 24
>PF07172 GRP: Glycine rich protein family; InterPro: IPR010800 This family consists of glycine rich proteins. Some of them may be involved in resistance to environmental stress [].
Probab=36.53 E-value=32 Score=26.83 Aligned_cols=22 Identities=41% Similarity=0.619 Sum_probs=15.9
Q ss_pred CcchhHHHHHHH---HHHHhhhhhh
Q 027523 1 MDRLNILLLGLP---LFLLCSDLLN 22 (222)
Q Consensus 1 ~~~~~~~~~g~~---~~~~~~d~~~ 22 (222)
|..-.+|||+|. +||+.||+.+
T Consensus 1 MaSK~~llL~l~LA~lLlisSevaa 25 (95)
T PF07172_consen 1 MASKAFLLLGLLLAALLLISSEVAA 25 (95)
T ss_pred CchhHHHHHHHHHHHHHHHHhhhhh
Confidence 666678888876 3677777764
No 25
>PRK13728 conjugal transfer protein TrbB; Provisional
Probab=36.01 E-value=2.9e+02 Score=23.89 Aligned_cols=101 Identities=16% Similarity=0.110 Sum_probs=60.5
Q ss_pred EEEEecCCCCchhhHHHHHHHHHHhCCCceeecccCCCChHHHHHHhhhhHHHHHHHHHHhhccccccccCCCChhhHhh
Q 027523 68 VNINFCASCSYRGTAITMKRMLETQFPGIDVVLANYPPPLPKRLLAKVVPAVQIGVIGIVVAGEQIFPMLGMTPPPWYYS 147 (222)
Q Consensus 68 V~i~YC~sCgY~~~f~~lk~~L~~~yP~i~V~G~nYPpp~~k~~Lak~v~~~q~~~i~~i~~G~~iF~~lG~~~P~w~~~ 147 (222)
|-+.+|+.|.|=+.+...=+.+.++| ++.|.+-++.-.. ....|.++-
T Consensus 73 lV~FwaswCp~C~~e~P~L~~l~~~~-g~~Vi~Vs~D~~~------------------------------~~~fPv~~d- 120 (181)
T PRK13728 73 VVLFMQGHCPYCHQFDPVLKQLAQQY-GFSVFPYTLDGQG------------------------------DTAFPEALP- 120 (181)
T ss_pred EEEEECCCCHhHHHHHHHHHHHHHHc-CCEEEEEEeCCCC------------------------------CCCCceEec-
Confidence 66789999999999988777888888 4766553332110 011122210
Q ss_pred hhcchhhHHHHHHHHHHhhhhccCCCcEEEEEECCeEeEeeeccCCCCChhHHHHHHHHHhcC
Q 027523 148 LRANRFGSIASTWLIGNFLQSFLQSSGAFEVYCNDDLVFSKLKEGRFPGEIELKDLVAKQLAS 210 (222)
Q Consensus 148 ~~~NK~~~~~~~~~~~n~l~~~l~stGaFEV~vng~LV~SKl~~grfP~~~EL~~~I~~~l~~ 210 (222)
.+. .. +... .++... .---.|-|--||+.++....+ ..+.+++.++|+..+..
T Consensus 121 --d~~-~~-~~~~-~g~~~~---~iPttfLId~~G~i~~~~~~G--~~~~~~L~~~I~~ll~~ 173 (181)
T PRK13728 121 --APP-DV-MQTF-FPNIPV---ATPTTFLVNVNTLEALPLLQG--ATDAAGFMARMDTVLQM 173 (181)
T ss_pred --Cch-hH-HHHH-hCCCCC---CCCeEEEEeCCCcEEEEEEEC--CCCHHHHHHHHHHHHhh
Confidence 000 00 0111 111111 223568888899998877775 55999999999998866
No 26
>PF14424 Toxin-deaminase: The BURPS668_1122 family of deaminases
Probab=36.00 E-value=26 Score=28.70 Aligned_cols=24 Identities=33% Similarity=0.652 Sum_probs=16.8
Q ss_pred EEecCCCCchhhHHHHHHHHHHhCCCceee
Q 027523 70 INFCASCSYRGTAITMKRMLETQFPGIDVV 99 (222)
Q Consensus 70 i~YC~sCgY~~~f~~lk~~L~~~yP~i~V~ 99 (222)
-.+|.||+ ...+|+ ..+||++.|.
T Consensus 105 ~~pC~SC~--~vi~qF----~~~~pni~~~ 128 (133)
T PF14424_consen 105 LPPCESCS--NVIEQF----KKDFPNIKVN 128 (133)
T ss_pred CCcChhHH--HHHHHH----HHHCCCcEEE
Confidence 35899994 455554 4689999763
No 27
>cd03715 RT_ZFREV_like RT_ZFREV_like: A subfamily of reverse transcriptases (RTs) found in sequences similar to the intact endogenous retrovirus ZFERV from zebrafish and to Moloney murine leukemia virus RT. An RT gene is usually indicative of a mobile element such as a retrotransposon or retrovirus. RTs occur in a variety of mobile elements, including retrotransposons, retroviruses, group II introns, bacterial msDNAs, hepadnaviruses, and caulimoviruses. These elements can be divided into two major groups. One group contains retroviruses and DNA viruses whose propagation involves an RNA intermediate. They are grouped together with transposable elements containing long terminal repeats (LTRs). The other group, also called poly(A)-type retrotransposons, contain fungal mitochondrial introns and transposable elements that lack LTRs. Phylogenetic analysis suggests that ZFERV belongs to a distinct group of retroviruses.
Probab=34.55 E-value=33 Score=28.94 Aligned_cols=18 Identities=22% Similarity=0.266 Sum_probs=14.5
Q ss_pred cEEEEEECCeEeEeeecc
Q 027523 174 GAFEVYCNDDLVFSKLKE 191 (222)
Q Consensus 174 GaFEV~vng~LV~SKl~~ 191 (222)
..-++|+||.+|||+-++
T Consensus 154 ~~~~~Y~DDili~s~~~~ 171 (210)
T cd03715 154 TILLQYVDDLLLAADSEE 171 (210)
T ss_pred eEEEEECCcEEEecCCHH
Confidence 345889999999997664
No 28
>PF02767 DNA_pol3_beta_2: DNA polymerase III beta subunit, central domain; InterPro: IPR022637 This entry describes the central domain of the beta chain of DNA polymerase III. This is a complex, multichain enzyme responsible for most of the replicative synthesis in bacteria. The beta chain is required for initiation of replication from an RNA primer, nucleotide triphosphate (dNTP) residues being added to the 5'-end of the growing DNA chain.; GO: 0003677 DNA binding, 0003887 DNA-directed DNA polymerase activity, 0008408 3'-5' exonuclease activity, 0006260 DNA replication, 0009360 DNA polymerase III complex; PDB: 3T0P_B 3P16_A 3RB9_B 2AWA_C 1VPK_A 2AVT_B 2XUR_B 3Q4K_A 3BEP_A 3D1G_A ....
Probab=32.79 E-value=49 Score=25.45 Aligned_cols=25 Identities=20% Similarity=0.353 Sum_probs=16.1
Q ss_pred CCcEEEEEECCeEeEeeeccCCCCC
Q 027523 172 SSGAFEVYCNDDLVFSKLKEGRFPG 196 (222)
Q Consensus 172 stGaFEV~vng~LV~SKl~~grfP~ 196 (222)
+.+...+..++..+.||+-+|.||+
T Consensus 92 ~~~~i~f~~~~~~~~srli~g~yPd 116 (116)
T PF02767_consen 92 SDNQIIFKFDNIEITSRLIDGEYPD 116 (116)
T ss_dssp ESSEEEEEESSEEEEEE-BSS----
T ss_pred cCCEEEEEECCEEEEEEEecccCCC
Confidence 3566667778999999999999996
No 29
>COG4837 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=32.53 E-value=28 Score=27.93 Aligned_cols=27 Identities=26% Similarity=0.524 Sum_probs=23.3
Q ss_pred ecCCCC----chhhHHHHHHHHHHhCCCcee
Q 027523 72 FCASCS----YRGTAITMKRMLETQFPGIDV 98 (222)
Q Consensus 72 YC~sCg----Y~~~f~~lk~~L~~~yP~i~V 98 (222)
-|.||- -+.+++=++.+|..+||+..+
T Consensus 15 iCASCV~aPtsKdt~eWLeaalkRKyp~~~F 45 (106)
T COG4837 15 ICASCVNAPTSKDTYEWLEAALKRKYPNQPF 45 (106)
T ss_pred hhHHhcCCCcchhHHHHHHHHHhccCCCCCc
Confidence 599994 788899999999999999754
No 30
>PRK10739 putative antibiotic transporter; Provisional
Probab=31.56 E-value=31 Score=30.02 Aligned_cols=44 Identities=14% Similarity=0.295 Sum_probs=36.7
Q ss_pred ccCCCChHHHHHHhhhhHHHHHHHHHHhhccccccccCCCChhh
Q 027523 101 ANYPPPLPKRLLAKVVPAVQIGVIGIVVAGEQIFPMLGMTPPPW 144 (222)
Q Consensus 101 ~nYPpp~~k~~Lak~v~~~q~~~i~~i~~G~~iF~~lG~~~P~w 144 (222)
+++++..-++..-|..-++=..++...++|+.++..+|+..|++
T Consensus 29 ~~~~~~~r~~ia~~a~~~a~~ill~f~~~G~~iL~~fGIsl~af 72 (197)
T PRK10739 29 KHLEPKRRRAIMIRELLIALLVMLVFLFAGEKILAFLNLRTETV 72 (197)
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHH
Confidence 45666777778888888888888889999999999999987775
No 31
>PF01106 NifU: NifU-like domain; InterPro: IPR001075 Iron-sulphur (FeS) clusters are important cofactors for numerous proteins involved in electron transfer, in redox and non-redox catalysis, in gene regulation, and as sensors of oxygen and iron. These functions depend on the various FeS cluster prosthetic groups, the most common being [2Fe-2S] and [4Fe-4S] []. FeS cluster assembly is a complex process involving the mobilisation of Fe and S atoms from storage sources, their assembly into [Fe-S] form, their transport to specific cellular locations, and their transfer to recipient apoproteins. So far, three FeS assembly machineries have been identified, which are capable of synthesising all types of [Fe-S] clusters: ISC (iron-sulphur cluster), SUF (sulphur assimilation), and NIF (nitrogen fixation) systems. The ISC system is conserved in eubacteria and eukaryotes (mitochondria), and has broad specificity, targeting general FeS proteins [, ]. It is encoded by the isc operon (iscRSUA-hscBA-fdx-iscX). IscS is a cysteine desulphurase, which obtains S from cysteine (converting it to alanine) and serves as a S donor for FeS cluster assembly. IscU and IscA act as scaffolds to accept S and Fe atoms, assembling clusters and transfering them to recipient apoproteins. HscA is a molecular chaperone and HscB is a co-chaperone. Fdx is a [2Fe-2S]-type ferredoxin. IscR is a transcription factor that regulates expression of the isc operon. IscX (also known as YfhJ) appears to interact with IscS and may function as an Fe donor during cluster assembly []. The SUF system is an alternative pathway to the ISC system that operates under iron starvation and oxidative stress. It is found in eubacteria, archaea and eukaryotes (plastids). The SUF system is encoded by the suf operon (sufABCDSE), and the six encoded proteins are arranged into two complexes (SufSE and SufBCD) and one protein (SufA). SufS is a pyridoxal-phosphate (PLP) protein displaying cysteine desulphurase activity. SufE acts as a scaffold protein that accepts S from SufS and donates it to SufA []. SufC is an ATPase with an unorthodox ATP-binding cassette (ABC)-like component. No specific functions have been assigned to SufB and SufD. SufA is homologous to IscA [], acting as a scaffold protein in which Fe and S atoms are assembled into [FeS] cluster forms, which can then easily be transferred to apoproteins targets. In the NIF system, NifS and NifU are required for the formation of metalloclusters of nitrogenase in Azotobacter vinelandii, and other organisms, as well as in the maturation of other FeS proteins. Nitrogenase catalyses the fixation of nitrogen. It contains a complex cluster, the FeMo cofactor, which contains molybdenum, Fe and S. NifS is a cysteine desulphurase. NifU binds one Fe atom at its N-terminal, assembling an FeS cluster that is transferred to nitrogenase apoproteins []. Nif proteins involved in the formation of FeS clusters can also be found in organisms that do not fix nitrogen []. This entry represents the C-terminal of NifU and homologous proteins. NifU contains two domains: an N-terminal (IPR002871 from INTERPRO) and a C-terminal domain []. These domains exist either together or on different polypeptides, both domains being found in organisms that do not fix nitrogen (e.g. yeast), so they have a broader significance in the cell than nitrogen fixation. ; GO: 0005506 iron ion binding, 0051536 iron-sulfur cluster binding, 0016226 iron-sulfur cluster assembly; PDB: 2JNV_A 2Z51_A 1TH5_A 1VEH_A 1XHJ_A.
Probab=28.15 E-value=1.5e+02 Score=21.40 Aligned_cols=31 Identities=16% Similarity=0.499 Sum_probs=21.3
Q ss_pred cEEEEEe---cCCCCchhhH--HHHHHHHHHhCCCc
Q 027523 66 STVNINF---CASCSYRGTA--ITMKRMLETQFPGI 96 (222)
Q Consensus 66 ~tV~i~Y---C~sCgY~~~f--~~lk~~L~~~yP~i 96 (222)
.+|.+.| |.+|.....= .-+++.|++++|++
T Consensus 27 ~~V~V~l~GaC~gC~~s~~Tl~~~Ie~~L~~~~~~v 62 (68)
T PF01106_consen 27 GVVYVRLTGACSGCPSSDMTLKQGIEQALREAVPEV 62 (68)
T ss_dssp TEEEEEEESSCCSSCCHHHHHHHHHHHHHHHHSTT-
T ss_pred CEEEEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCC
Confidence 3788888 7777654432 45678888889986
No 32
>PRK14494 putative molybdopterin-guanine dinucleotide biosynthesis protein MobB/FeS domain-containing protein protein; Provisional
Probab=28.06 E-value=81 Score=28.08 Aligned_cols=49 Identities=8% Similarity=0.177 Sum_probs=28.9
Q ss_pred ecCCCCchhhHHHHHHHHHHh---CCCceeecc------cCCCChHHHHHHhhhhHHHHH
Q 027523 72 FCASCSYRGTAITMKRMLETQ---FPGIDVVLA------NYPPPLPKRLLAKVVPAVQIG 122 (222)
Q Consensus 72 YC~sCgY~~~f~~lk~~L~~~---yP~i~V~G~------nYPpp~~k~~Lak~v~~~q~~ 122 (222)
-|..||| +..++.+.+.+- .+++.+..+ |=.+-|+|.++++++.-.=.+
T Consensus 152 nCg~CG~--~C~~~a~~i~~g~~~~~~C~~~~~~~~~~v~g~~i~ln~fv~~~~~~~i~g 209 (229)
T PRK14494 152 NCGHCGF--NCKGFAKAIVKGEAKWDDCVSLSGRVKLIVDGKIIPLNPFVQEIVENTIKG 209 (229)
T ss_pred CCCccCc--CHHHHHHHHHcCCCCccCCccCCceeEEEECCeeecCCHHHHHHHHHHHHH
Confidence 5999999 999998888653 232221111 223445666666666554333
No 33
>PRK14946 DNA polymerase III subunit beta; Provisional
Probab=27.92 E-value=71 Score=29.98 Aligned_cols=28 Identities=4% Similarity=-0.019 Sum_probs=21.8
Q ss_pred cEEEEEECCeEeEeeeccCCCCChhHHH
Q 027523 174 GAFEVYCNDDLVFSKLKEGRFPGEIELK 201 (222)
Q Consensus 174 GaFEV~vng~LV~SKl~~grfP~~~EL~ 201 (222)
+-+.+..++..++|||-+|.||+.+.++
T Consensus 218 ~~i~f~~~~~~~~srLieG~fPdy~~vi 245 (366)
T PRK14946 218 SKISYTYDNLTIQSRIFTIEYKDISNVL 245 (366)
T ss_pred CEEEEEECCEEEEEEEecccCCCHHHhC
Confidence 3445555778899999999999977664
No 34
>PF01914 MarC: MarC family integral membrane protein; InterPro: IPR002771 Members of this family are integral membrane proteins that includes the antibiotic resistance protein MarC. These proteins may be transporters. ; GO: 0016021 integral to membrane
Probab=27.70 E-value=39 Score=29.30 Aligned_cols=44 Identities=16% Similarity=0.316 Sum_probs=38.1
Q ss_pred ccCCCChHHHHHHhhhhHHHHHHHHHHhhccccccccCCCChhh
Q 027523 101 ANYPPPLPKRLLAKVVPAVQIGVIGIVVAGEQIFPMLGMTPPPW 144 (222)
Q Consensus 101 ~nYPpp~~k~~Lak~v~~~q~~~i~~i~~G~~iF~~lG~~~P~w 144 (222)
+++++..-|+..-|..-++=..++.+.++|+.|+..+|+..+++
T Consensus 29 ~~~~~~~r~~ia~~a~~~a~~ill~f~~~G~~iL~~fgIsl~af 72 (203)
T PF01914_consen 29 KGMSPKERRRIARRASIIAFIILLIFAFFGQLILNFFGISLPAF 72 (203)
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHH
Confidence 46777778888889988888889999999999999999977765
No 35
>cd00304 RT_like RT_like: Reverse transcriptase (RT, RNA-dependent DNA polymerase)_like family. An RT gene is usually indicative of a mobile element such as a retrotransposon or retrovirus. RTs occur in a variety of mobile elements, including retrotransposons, retroviruses, group II introns, bacterial msDNAs, hepadnaviruses, and caulimoviruses. These elements can be divided into two major groups. One group contains retroviruses and DNA viruses whose propagation involves an RNA intermediate. They are grouped together with transposable elements containing long terminal repeats (LTRs). The other group, also called poly(A)-type retrotransposons, contain fungal mitochondrial introns and transposable elements that lack LTRs.
Probab=27.35 E-value=1.9e+02 Score=20.58 Aligned_cols=33 Identities=21% Similarity=0.153 Sum_probs=25.9
Q ss_pred CCcEEEEEECCeEeEeeeccCCCCChhHHHHHHHHHhc
Q 027523 172 SSGAFEVYCNDDLVFSKLKEGRFPGEIELKDLVAKQLA 209 (222)
Q Consensus 172 stGaFEV~vng~LV~SKl~~grfP~~~EL~~~I~~~l~ 209 (222)
.+.....|+||-+++++-+ +..+..+.+.+.+.
T Consensus 39 ~~~~~~~Y~DD~~i~~~~~-----~~~~~~~~l~~~l~ 71 (98)
T cd00304 39 LDITLIRYVDDLVVIAKSE-----QQAVKKRELEEFLA 71 (98)
T ss_pred CCceEEEeeCcEEEEeCcH-----HHHHHHHHHHHHHH
Confidence 4678899999999998876 66777777776664
No 36
>PF09526 DUF2387: Probable metal-binding protein (DUF2387); InterPro: IPR012658 Members of this family are small proteins, about 70 residues in length, with a basic triplet near the N terminus and a probable metal-binding motif CPXCX(18)CXXC. Members are found in various proteobacteria.
Probab=26.90 E-value=35 Score=25.39 Aligned_cols=16 Identities=25% Similarity=0.575 Sum_probs=12.9
Q ss_pred cEEEEEecCCCCchhh
Q 027523 66 STVNINFCASCSYRGT 81 (222)
Q Consensus 66 ~tV~i~YC~sCgY~~~ 81 (222)
..++..-|++|||+..
T Consensus 26 ~~ve~vECV~CGy~e~ 41 (71)
T PF09526_consen 26 NGVEYVECVECGYTER 41 (71)
T ss_pred CCceEEEecCCCCeec
Confidence 3478889999999854
No 37
>PLN02304 probable pectinesterase
Probab=26.84 E-value=69 Score=30.92 Aligned_cols=19 Identities=11% Similarity=0.162 Sum_probs=11.5
Q ss_pred cCCCCchhhHHHHHHHHHH
Q 027523 73 CASCSYRGTAITMKRMLET 91 (222)
Q Consensus 73 C~sCgY~~~f~~lk~~L~~ 91 (222)
++...=.+.|..++.+|..
T Consensus 78 ~Va~dGsGdf~TIQ~AIda 96 (379)
T PLN02304 78 CVDPNGCCNFTTVQSAVDA 96 (379)
T ss_pred EECCCCCCCccCHHHHHhh
Confidence 3343323567788888865
No 38
>PF08531 Bac_rhamnosid_N: Alpha-L-rhamnosidase N-terminal domain; InterPro: IPR013737 This domain is found in bacterial rhamnosidase A and B enzymes and is probably involved in substrate recognition. ; PDB: 2OKX_B.
Probab=26.41 E-value=54 Score=27.32 Aligned_cols=18 Identities=28% Similarity=0.473 Sum_probs=14.8
Q ss_pred CCCcEEEEEECCeEeEee
Q 027523 171 QSSGAFEVYCNDDLVFSK 188 (222)
Q Consensus 171 ~stGaFEV~vng~LV~SK 188 (222)
...|.||+||||+.|=.-
T Consensus 11 sa~g~Y~l~vNG~~V~~~ 28 (172)
T PF08531_consen 11 SALGRYELYVNGERVGDG 28 (172)
T ss_dssp EEESEEEEEETTEEEEEE
T ss_pred EeCeeEEEEECCEEeeCC
Confidence 467999999999999543
No 39
>PRK00366 ispG 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase; Reviewed
Probab=25.96 E-value=72 Score=30.75 Aligned_cols=89 Identities=20% Similarity=0.290 Sum_probs=54.9
Q ss_pred EEEEEecCCCCc-hhhHHHHHHHHHHhCCCceeecccCCCChHHHHHHhhhhHHHHHHHHHHhhc--cccccccCCCChh
Q 027523 67 TVNINFCASCSY-RGTAITMKRMLETQFPGIDVVLANYPPPLPKRLLAKVVPAVQIGVIGIVVAG--EQIFPMLGMTPPP 143 (222)
Q Consensus 67 tV~i~YC~sCgY-~~~f~~lk~~L~~~yP~i~V~G~nYPpp~~k~~Lak~v~~~q~~~i~~i~~G--~~iF~~lG~~~P~ 143 (222)
.+.|.-|-+|++ ......+.+.++++|-++.. | ++++++++++-| +-=-.-+|+
T Consensus 265 g~~IisCPgCgR~~~D~~~la~~vee~~~~~~~-----P--------------lkIAVmGC~VNgpGEa~~aDIGI---- 321 (360)
T PRK00366 265 GPEVISCPTCGRTEFDVIQELAEVEQRLEHIKM-----P--------------LKVAVMGCVVNGPGEAKEADIGI---- 321 (360)
T ss_pred CCeEEECCCCCCCcccHHHHHHHHHHHhcCCCC-----C--------------cEEEEeCCCCCCCCchhhCcEeE----
Confidence 367889999995 44677888899999876532 2 566777776543 221122232
Q ss_pred hHhhhhcchhhHHHHHHHHHHhhhhccCCCcEEEEEECCeEeEeeeccCCCCChhHHHHHHHHH
Q 027523 144 WYYSLRANRFGSIASTWLIGNFLQSFLQSSGAFEVYCNDDLVFSKLKEGRFPGEIELKDLVAKQ 207 (222)
Q Consensus 144 w~~~~~~NK~~~~~~~~~~~n~l~~~l~stGaFEV~vng~LV~SKl~~grfP~~~EL~~~I~~~ 207 (222)
.+..+.+-|+.+|+.|- |..+.. =.++|++.|++.
T Consensus 322 --------------------------aG~~~~~~vf~~Gk~v~-kv~~~~--~~~~l~~~i~~~ 356 (360)
T PRK00366 322 --------------------------AGGNPKGPVFVDGEKIK-TLPEEN--IVEELEAEIEAY 356 (360)
T ss_pred --------------------------ecCCCceEEEECCEEee-eeChHh--HHHHHHHHHHHH
Confidence 34677799999999975 333222 123455555544
No 40
>cd07287 PX_RPK118_like The phosphoinositide binding Phox Homology domain of RPK118-like proteins. The PX domain is a phosphoinositide (PI) binding module present in many proteins with diverse functions such as cell signaling, vesicular trafficking, protein sorting, and lipid modification, among others. Members of this subfamily bear similarity to human RPK118, which contains an N-terminal PX domain, a Microtubule Interacting and Trafficking (MIT) domain, and a kinase domain. RPK118 binds sphingosine kinase, a key enzyme in the synthesis of sphingosine 1-phosphate (SPP), a lipid messenger involved in many cellular events. RPK118 may be involved in transmitting SPP-mediated signaling. It also binds the antioxidant peroxiredoxin-3 (PRDX3) and may be involved in the transport of PRDX3 from the cytoplasm to its site of function in the mitochondria. Members of this subfamily also show similarity to sorting nexin 15 (SNX15), which contains PX and MIT domains but does not contain a kinase doma
Probab=25.62 E-value=40 Score=27.04 Aligned_cols=40 Identities=10% Similarity=0.090 Sum_probs=27.3
Q ss_pred ecCCCCchhhHHHHHHHHHHhCCCceeecccCCCChHHHHH
Q 027523 72 FCASCSYRGTAITMKRMLETQFPGIDVVLANYPPPLPKRLL 112 (222)
Q Consensus 72 YC~sCgY~~~f~~lk~~L~~~yP~i~V~G~nYPpp~~k~~L 112 (222)
+++...|. .|..|.+.|+++||++.-.|.--||.|-++++
T Consensus 38 ~~V~RRYS-DF~~L~~~L~~~~~~~~~~~~~~Pp~p~k~~~ 77 (118)
T cd07287 38 IVVWKRYS-DFKKLHKDLWQIHKNLCRQSELFPPFAKAKVF 77 (118)
T ss_pred EEEeCCch-HHHHHHHHHHHhccccccCCcccCCCCCceee
Confidence 45556665 78999999999999864444445666555543
No 41
>PF04457 DUF504: Protein of unknown function (DUF504); InterPro: IPR007547 This is a family of uncharacterised proteins.
Probab=25.56 E-value=45 Score=23.42 Aligned_cols=16 Identities=13% Similarity=0.401 Sum_probs=12.3
Q ss_pred CcEEEE-EECCeEeEee
Q 027523 173 SGAFEV-YCNDDLVFSK 188 (222)
Q Consensus 173 tGaFEV-~vng~LV~SK 188 (222)
.-.=|| +-||++||+|
T Consensus 40 HRI~~ir~~~g~vvw~R 56 (56)
T PF04457_consen 40 HRIVEIRKYDGEVVWDR 56 (56)
T ss_pred eeEEEEEecCCcEEEcC
Confidence 344567 8899999986
No 42
>COG2126 RPL37A Ribosomal protein L37E [Translation, ribosomal structure and biogenesis]
Probab=25.33 E-value=32 Score=25.21 Aligned_cols=14 Identities=29% Similarity=0.885 Sum_probs=11.4
Q ss_pred EEEEEecCCCCchh
Q 027523 67 TVNINFCASCSYRG 80 (222)
Q Consensus 67 tV~i~YC~sCgY~~ 80 (222)
.|+=.||.+|||-.
T Consensus 28 hv~k~~CaaCGfgr 41 (61)
T COG2126 28 HVRKKYCAACGFGR 41 (61)
T ss_pred eeccceecccCCCC
Confidence 46778999999973
No 43
>cd07286 PX_SNX18 The phosphoinositide binding Phox Homology domain of Sorting Nexin 18. The PX domain is a phosphoinositide (PI) binding module present in many proteins with diverse functions. Sorting nexins (SNXs) make up the largest group among PX domain containing proteins. They are involved in regulating membrane traffic and protein sorting in the endosomal system. The PX domain of SNXs binds PIs and targets the protein to PI-enriched membranes. SNXs differ from each other in PI-binding specificity and affinity, and the presence of other protein-protein interaction domains, which help determine subcellular localization and specific function in the endocytic pathway. SNX18, like SNX9, contains an N-terminal Src Homology 3 (SH3) domain, a PX domain, and a C-terminal Bin/Amphiphysin/Rvs (BAR) domain, which detects membrane curvature. The PX-BAR structural unit helps determine specific membrane localization. SNX18 is localized to peripheral endosomal structures, and acts in a trafficki
Probab=24.50 E-value=40 Score=27.59 Aligned_cols=27 Identities=26% Similarity=0.204 Sum_probs=21.8
Q ss_pred hHHHHHHHHHHhCCCceeecccCCCChHHHHH
Q 027523 81 TAITMKRMLETQFPGIDVVLANYPPPLPKRLL 112 (222)
Q Consensus 81 ~f~~lk~~L~~~yP~i~V~G~nYPpp~~k~~L 112 (222)
-|+.|.+.|.++||++.| ||-|-|+.+
T Consensus 40 DF~~L~~~L~~~~p~~~I-----PpLP~K~~~ 66 (127)
T cd07286 40 HFDWLYARLAEKFPVISV-----PHIPEKQAT 66 (127)
T ss_pred HHHHHHHHHHHHCCCcEe-----CCCcCCCcC
Confidence 678899999999999866 667777643
No 44
>KOG1819 consensus FYVE finger-containing proteins [General function prediction only]
Probab=24.13 E-value=32 Score=35.06 Aligned_cols=17 Identities=12% Similarity=0.089 Sum_probs=8.8
Q ss_pred HHHHHHhcCCCCCCCcC
Q 027523 202 DLVAKQLASSRLVDGVG 218 (222)
Q Consensus 202 ~~I~~~l~~~~~~~~~~ 218 (222)
..-+.++..+|.+|+-+
T Consensus 788 a~~rshvtrsrslgdqe 804 (990)
T KOG1819|consen 788 AAQRSHVTRSRSLGDQE 804 (990)
T ss_pred hhhhhhhcccccccchh
Confidence 34445555566555443
No 45
>COG2215 ABC-type uncharacterized transport system, permease component [General function prediction only]
Probab=24.01 E-value=1.2e+02 Score=28.52 Aligned_cols=19 Identities=42% Similarity=0.508 Sum_probs=15.0
Q ss_pred HHHHHHHHHHHhhhhhhcc
Q 027523 6 ILLLGLPLFLLCSDLLNLF 24 (222)
Q Consensus 6 ~~~~g~~~~~~~~d~~~~f 24 (222)
+|+.++-+.++-+-+..+|
T Consensus 139 ~Ll~~~G~w~~~r~lr~l~ 157 (303)
T COG2215 139 LLLILLGLWLLWRTLRRLR 157 (303)
T ss_pred HHHHHHHHHHHHHHHHHhh
Confidence 4666777888888888888
No 46
>PF11208 DUF2992: Protein of unknown function (DUF2992); InterPro: IPR016787 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=23.96 E-value=1.9e+02 Score=23.85 Aligned_cols=44 Identities=20% Similarity=0.313 Sum_probs=38.0
Q ss_pred cEEEEEECCeEeEeeeccCCCCChhHHHHHHHHHhcCCCCCCCc
Q 027523 174 GAFEVYCNDDLVFSKLKEGRFPGEIELKDLVAKQLASSRLVDGV 217 (222)
Q Consensus 174 GaFEV~vng~LV~SKl~~grfP~~~EL~~~I~~~l~~~~~~~~~ 217 (222)
|.||-.-+|.+=-.|..=|.-|+..||.+.|...+...++-..+
T Consensus 12 Gv~E~~~~~~~~v~rv~FG~EP~d~Ei~~fi~~~~~~L~f~~~~ 55 (132)
T PF11208_consen 12 GVFERHEDGKYKVARVTFGAEPKDPEIYEFILKHWYKLRFSPAV 55 (132)
T ss_pred EEEEEEECCEEEEEEEeeCCCCCcHHHHHHHHHHHHHhcCCccc
Confidence 89999999999999999999999999999999988665555433
No 47
>smart00776 NPCBM This novel putative carbohydrate binding module (NPCBM) domain is found at the N-terminus of glycosyl hydrolase family 98 proteins.
Probab=23.91 E-value=70 Score=26.37 Aligned_cols=17 Identities=29% Similarity=0.585 Sum_probs=15.2
Q ss_pred CCcEEEEEECCeEeEee
Q 027523 172 SSGAFEVYCNDDLVFSK 188 (222)
Q Consensus 172 stGaFEV~vng~LV~SK 188 (222)
.+-.|+||.||+.+|+.
T Consensus 83 gsV~F~V~~Dg~~l~~s 99 (145)
T smart00776 83 GSVVFEVYADGTKLYNS 99 (145)
T ss_pred ccEEEEEEeCCEeEEEc
Confidence 57899999999999965
No 48
>cd06861 PX_Vps5p The phosphoinositide binding Phox Homology domain of yeast sorting nexin Vps5p. The PX domain is a phosphoinositide (PI) binding module present in many proteins with diverse functions. Sorting nexins (SNXs) make up the largest group among PX domain containing proteins. They are involved in regulating membrane traffic and protein sorting in the endosomal system. The PX domain of SNXs binds PIs and targets the protein to PI-enriched membranes. SNXs differ from each other in PI-binding specificity and affinity, and the presence of other protein-protein interaction domains, which help determine subcellular localization and specific function in the endocytic pathway. Vsp5p is the yeast counterpart of human SNX1 and is part of the retromer complex, which functions in the endosome-to-Golgi retrieval of vacuolar protein sorting receptor Vps10p, the Golgi-resident membrane protein A-ALP, and endopeptidase Kex2. The PX domain of Vps5p binds phosphatidylinositol-3-phosphate (PI3P
Probab=23.55 E-value=47 Score=25.83 Aligned_cols=29 Identities=31% Similarity=0.504 Sum_probs=21.3
Q ss_pred hhHHHHHHHHHHhCCCceeecccCCCChHHHHHH
Q 027523 80 GTAITMKRMLETQFPGIDVVLANYPPPLPKRLLA 113 (222)
Q Consensus 80 ~~f~~lk~~L~~~yP~i~V~G~nYPpp~~k~~La 113 (222)
..|+.+.+.|+++||+..+ ||.|-|+.++
T Consensus 44 sdF~~L~~~L~~~~~~~~i-----P~lP~K~~~~ 72 (112)
T cd06861 44 RDFRWLYRQLQNNHPGVIV-----PPPPEKQSVG 72 (112)
T ss_pred HHHHHHHHHHHHHCCCCcc-----CCCCCccccc
Confidence 4678889999999998754 5556666543
No 49
>cd01647 RT_LTR RT_LTR: Reverse transcriptases (RTs) from retrotransposons and retroviruses which have long terminal repeats (LTRs) in their DNA copies but not in their RNA template. RT catalyzes DNA replication from an RNA template, and is responsible for the replication of retroelements. An RT gene is usually indicative of a mobile element such as a retrotransposon or retrovirus. RTs are present in a variety of mobile elements, including retrotransposons, retroviruses, group II introns, bacterial msDNAs, hepadnaviruses, and Caulimoviruses.
Probab=23.27 E-value=35 Score=26.18 Aligned_cols=21 Identities=43% Similarity=0.570 Sum_probs=15.8
Q ss_pred CcEEEEEECCeEeEeeeccCC
Q 027523 173 SGAFEVYCNDDLVFSKLKEGR 193 (222)
Q Consensus 173 tGaFEV~vng~LV~SKl~~gr 193 (222)
...-++|+||.+|+++-.+..
T Consensus 120 ~~~~~~y~DDi~i~~~~~~~~ 140 (177)
T cd01647 120 GDFVEVYLDDILVYSKTEEEH 140 (177)
T ss_pred ccccEEEecCccccCCCHHHH
Confidence 445778999999999864433
No 50
>cd03023 DsbA_Com1_like DsbA family, Com1-like subfamily; composed of proteins similar to Com1, a 27-kDa outer membrane-associated immunoreactive protein originally found in both acute and chronic disease strains of the pathogenic bacteria Coxiella burnetti. It contains a CXXC motif, assumed to be imbedded in a DsbA-like structure. Its homology to DsbA suggests that the protein is a protein disulfide oxidoreductase. The role of such a protein in pathogenesis is unknown.
Probab=23.23 E-value=3.3e+02 Score=20.51 Aligned_cols=41 Identities=22% Similarity=0.284 Sum_probs=28.5
Q ss_pred cEEEEEecCCCCchhhHHHHHHHHHHhCCCceeecccCCCC
Q 027523 66 STVNINFCASCSYRGTAITMKRMLETQFPGIDVVLANYPPP 106 (222)
Q Consensus 66 ~tV~i~YC~sCgY~~~f~~lk~~L~~~yP~i~V~G~nYPpp 106 (222)
.+|.+.+-..|++=..+...-+.+..++++++++-.+||..
T Consensus 7 ~~i~~f~D~~Cp~C~~~~~~l~~~~~~~~~~~~~~~~~p~~ 47 (154)
T cd03023 7 VTIVEFFDYNCGYCKKLAPELEKLLKEDPDVRVVFKEFPIL 47 (154)
T ss_pred EEEEEEECCCChhHHHhhHHHHHHHHHCCCceEEEEeCCcc
Confidence 47777777788876666554445556789988877777643
No 51
>TIGR02861 SASP_H small acid-soluble spore protein, H-type. This model is derived from pfam08141 but has been expanded to include in the seed corresponding proteins from three species of Clostridium. Members of this family should occur only in endospore-forming bacteria, typically with two members per genome, but may be absent from the genomes of some endospore-forming bacteria. SspH (previously designated YfjU) was shown to be expressed specifically in spores of Bacillus subtilis.
Probab=22.41 E-value=1.1e+02 Score=22.01 Aligned_cols=17 Identities=18% Similarity=0.124 Sum_probs=14.5
Q ss_pred CCCcEEEEEECCeEeEe
Q 027523 171 QSSGAFEVYCNDDLVFS 187 (222)
Q Consensus 171 ~stGaFEV~vng~LV~S 187 (222)
.|...-+|++||+.||=
T Consensus 11 ~S~~~i~V~Y~G~pV~I 27 (58)
T TIGR02861 11 ASPEMINVTYKGVPVYI 27 (58)
T ss_pred cCccceEEEECCEEEEE
Confidence 36777999999999993
No 52
>PF03226 Yippee-Mis18: Yippee zinc-binding/DNA-binding /Mis18, centromere assembly; InterPro: IPR004910 This entry represents the Yippee-like (YPEL) family of putative zinc-binding proteins which is highly conserved among eukaryotes. The first protein in this family to be characterised, the Yippee protein from Drosophila, was identified by yeast interaction trap screen as a protein that physically interacts with moth hemolin []. It was subsequently found to be a member of a highly conserved family of proteins found in diverse eukaryotes including plants, animals and fungi []. Mammals contain five members of this family, YPEL1 to YPEL5, while other organisms tend to contain only two or three members. The mammalian proteins all appear to localise in the nucleus. YPEL1-4 are located in an unknown structure located on or close to the mitotic apparatus in the mitotic phase, whereas in the interphase they are located in the nuclei and nucleoli. In contrast, YPEL5 is localised to the centrosome and nucleus during interphase and at the mitotic spindle during mitosis, suggesting a function distinct from that of YPEL1-4. The localisation of the YPEL proteins suggests a novel, thopugh still unknown, function involved in cell division.
Probab=22.36 E-value=38 Score=25.44 Aligned_cols=27 Identities=30% Similarity=0.632 Sum_probs=22.1
Q ss_pred cEEEEEecCCCC------chhhHHHHHHHHHHhC
Q 027523 66 STVNINFCASCS------YRGTAITMKRMLETQF 93 (222)
Q Consensus 66 ~tV~i~YC~sCg------Y~~~f~~lk~~L~~~y 93 (222)
-++.-.+|.+|+ |..++++ .+..+.+|
T Consensus 53 ~~~~~l~C~~C~~~lGwkY~~a~~~-~~~k~g~f 85 (96)
T PF03226_consen 53 HTVRDLFCSGCNTILGWKYESAPEE-QKYKEGKF 85 (96)
T ss_pred EEEEEeEcccCChhHCcEEEEcCHh-HhhhCCEE
Confidence 789999999997 7888888 77776654
No 53
>PF05265 DUF723: Protein of unknown function (DUF723); InterPro: IPR007929 This family contains several uncharacterised proteins from Neisseria meningitidis. These proteins may have a role in DNA binding.
Probab=22.18 E-value=1.1e+02 Score=22.44 Aligned_cols=26 Identities=19% Similarity=0.157 Sum_probs=19.7
Q ss_pred hhhHHHHHHHHHHhCCCce---eecccCC
Q 027523 79 RGTAITMKRMLETQFPGID---VVLANYP 104 (222)
Q Consensus 79 ~~~f~~lk~~L~~~yP~i~---V~G~nYP 104 (222)
+..|++.+..++++||++. ..|..||
T Consensus 2 ~~t~~~~~~r~~e~Fp~~slvef~g~~~P 30 (60)
T PF05265_consen 2 AMTFESAASRFEEKFPHYSLVEFSGVATP 30 (60)
T ss_pred ceeHHHHHHHHHHHCCCceEEEEeCCCCc
Confidence 4578999999999999974 3455554
No 54
>cd06533 Glyco_transf_WecG_TagA The glycosyltransferase WecG/TagA superfamily contains Escherichia coli WecG, Bacillus subtilis TagA and related proteins. E. coli WecG is believed to be a UDP-N-acetyl-D-mannosaminuronic acid transferase, and is involved in enterobacterial common antigen (eca) synthesis. B. subtilis TagA plays a key role in the Wall Teichoic Acid (WTA) biosynthetic pathway, catalyzing the transfer of N-acetylmannosamine to the C4 hydroxyl of a membrane-anchored N-acetylglucosaminyl diphospholipid to make ManNAc-beta-(1,4)-GlcNAc-pp-undecaprenyl. This is the first committed step in this pathway. Also included in this group is Xanthomonas campestris pv. campestris GumM, a glycosyltransferase participating in the biosynthesis of the exopolysaccharide xanthan.
Probab=21.97 E-value=1.1e+02 Score=25.41 Aligned_cols=32 Identities=13% Similarity=0.243 Sum_probs=24.2
Q ss_pred EEEEecCCCCchhhHHHHHHHHHHhCCCceeecc
Q 027523 68 VNINFCASCSYRGTAITMKRMLETQFPGIDVVLA 101 (222)
Q Consensus 68 V~i~YC~sCgY~~~f~~lk~~L~~~yP~i~V~G~ 101 (222)
.+|.+..+ -....++.++.|+++||+++|.|.
T Consensus 47 ~~v~llG~--~~~~~~~~~~~l~~~yp~l~i~g~ 78 (171)
T cd06533 47 LRVFLLGA--KPEVLEKAAERLRARYPGLKIVGY 78 (171)
T ss_pred CeEEEECC--CHHHHHHHHHHHHHHCCCcEEEEe
Confidence 34555543 367778888899999999999983
No 55
>PF13684 Dak1_2: Dihydroxyacetone kinase family
Probab=21.93 E-value=1.2e+02 Score=27.92 Aligned_cols=33 Identities=24% Similarity=0.431 Sum_probs=27.3
Q ss_pred cEEEEEecCCCCchhhHHHHHHHHHHhCCCceee
Q 027523 66 STVNINFCASCSYRGTAITMKRMLETQFPGIDVV 99 (222)
Q Consensus 66 ~tV~i~YC~sCgY~~~f~~lk~~L~~~yP~i~V~ 99 (222)
--|.+.|....+=. ..+.+++.|+++||+++|+
T Consensus 265 elvTi~~G~~~~~~-~a~~l~~~l~~~~p~~eve 297 (313)
T PF13684_consen 265 ELVTIYYGEDVSEE-EAEALAEFLEEKYPDVEVE 297 (313)
T ss_pred eEEEEEecCCCCHH-HHHHHHHHHHHHhCCeEEE
Confidence 35888888776544 8899999999999999875
No 56
>PRK06673 DNA polymerase III subunit beta; Validated
Probab=21.92 E-value=1e+02 Score=28.87 Aligned_cols=24 Identities=25% Similarity=0.466 Sum_probs=19.1
Q ss_pred EEECCeEeEeeeccCCCCChhHHH
Q 027523 178 VYCNDDLVFSKLKEGRFPGEIELK 201 (222)
Q Consensus 178 V~vng~LV~SKl~~grfP~~~EL~ 201 (222)
+..++..++|||-+|.||+.+.++
T Consensus 230 f~~~~~~~~srLieG~fPdy~~vi 253 (376)
T PRK06673 230 FTFGTTTLYSRLIEGKYPNISTLI 253 (376)
T ss_pred EEECCEEEEEEEecccCCChhhcC
Confidence 344678889999999999976553
No 57
>COG3809 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=21.74 E-value=69 Score=24.93 Aligned_cols=29 Identities=31% Similarity=0.772 Sum_probs=20.5
Q ss_pred cEEEEEecCCCCchhhH---HHHHHHHHHh-CCCc
Q 027523 66 STVNINFCASCSYRGTA---ITMKRMLETQ-FPGI 96 (222)
Q Consensus 66 ~tV~i~YC~sCgY~~~f---~~lk~~L~~~-yP~i 96 (222)
..|+|.||..| ++.. -|+.+.|+.. ||+-
T Consensus 17 s~vEiD~CPrC--rGVWLDrGELdKli~r~r~pqp 49 (88)
T COG3809 17 SGVEIDYCPRC--RGVWLDRGELDKLIERSRYPQP 49 (88)
T ss_pred cCceeeeCCcc--ccEeecchhHHHHHHHhcCCCC
Confidence 35899999999 4443 3667777666 7764
No 58
>PRK09335 30S ribosomal protein S26e; Provisional
Probab=21.58 E-value=45 Score=26.45 Aligned_cols=16 Identities=19% Similarity=0.467 Sum_probs=11.8
Q ss_pred cEEEEEecCCCCchhh
Q 027523 66 STVNINFCASCSYRGT 81 (222)
Q Consensus 66 ~tV~i~YC~sCgY~~~ 81 (222)
..++..||+||-....
T Consensus 63 ~~~k~~YCvSCAiH~~ 78 (95)
T PRK09335 63 YPVTKCYCVNCAVHLG 78 (95)
T ss_pred eeeeeEEechhhhhcc
Confidence 3678899999965443
No 59
>TIGR00427 membrane protein, MarC family. MarC is a protein that spans the plasma membrane multiple times and once was thought to be a multiple antibiotic resistance protein. The function for this family is unknown.
Probab=21.45 E-value=60 Score=28.17 Aligned_cols=44 Identities=16% Similarity=0.292 Sum_probs=35.8
Q ss_pred ccCCCChHHHHHHhhhhHHHHHHHHHHhhccccccccCCCChhh
Q 027523 101 ANYPPPLPKRLLAKVVPAVQIGVIGIVVAGEQIFPMLGMTPPPW 144 (222)
Q Consensus 101 ~nYPpp~~k~~Lak~v~~~q~~~i~~i~~G~~iF~~lG~~~P~w 144 (222)
+++++..-++..-|..-++=..++.+.++|+.++..+|+.-|++
T Consensus 32 ~~~~~~~r~~ia~~~~l~a~~ill~f~~~G~~iL~~fgIsl~af 75 (201)
T TIGR00427 32 EYYTAAERNKIAKKANISSFIILLIFLVFGDTILKLFGISIDAF 75 (201)
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHH
Confidence 45666667777778888888888889999999999999977664
No 60
>cd06865 PX_SNX_like The phosphoinositide binding Phox Homology domain of SNX-like proteins. The PX domain is a phosphoinositide (PI) binding module present in many proteins with diverse functions. Sorting nexins (SNXs) make up the largest group among PX domain containing proteins. They are involved in regulating membrane traffic and protein sorting in the endosomal system. The PX domain of SNXs binds PIs and targets the protein to PI-enriched membranes. SNXs differ from each other in PI-binding specificity and affinity, and the presence of other protein-protein interaction domains, which help determine subcellular localization and specific function in the endocytic pathway. Some SNXs are localized in early endosome structures such as clathrin-coated pits, while others are located in late structures of the endocytic pathway. This subfamily is composed of uncharacterized proteins, predominantly from plants, with similarity to sorting nexins. A few members show a similar domain architectu
Probab=21.39 E-value=65 Score=25.43 Aligned_cols=28 Identities=21% Similarity=0.402 Sum_probs=20.9
Q ss_pred hhHHHHHHHHHHhCCCceeecccCCCChHHHHH
Q 027523 80 GTAITMKRMLETQFPGIDVVLANYPPPLPKRLL 112 (222)
Q Consensus 80 ~~f~~lk~~L~~~yP~i~V~G~nYPpp~~k~~L 112 (222)
..|+.|.+.|+++||++.+ ||.|-|..+
T Consensus 49 sdF~~L~~~L~~~~p~~~i-----PplP~K~~~ 76 (120)
T cd06865 49 RDVVALADRLAEAYRGAFV-----PPRPDKSVV 76 (120)
T ss_pred HHHHHHHHHHHHHCCCCee-----CCCcCCccc
Confidence 3678899999999999755 555656444
No 61
>PRK14942 DNA polymerase III subunit beta; Provisional
Probab=21.34 E-value=1.2e+02 Score=28.48 Aligned_cols=21 Identities=33% Similarity=0.517 Sum_probs=16.9
Q ss_pred ECCeEeEeeeccCCCCChhHH
Q 027523 180 CNDDLVFSKLKEGRFPGEIEL 200 (222)
Q Consensus 180 vng~LV~SKl~~grfP~~~EL 200 (222)
.++..++|||-+|+||+.+.+
T Consensus 234 ~~~~~~~srLieG~yPdy~~v 254 (373)
T PRK14942 234 ANNIELLCKLIEGNFPNYEQV 254 (373)
T ss_pred ECCEEEEEEecccCCCChhhh
Confidence 356678999999999997654
No 62
>cd01645 RT_Rtv RT_Rtv: Reverse transcriptases (RTs) from retroviruses (Rtvs). RTs catalyze the conversion of single-stranded RNA into double-stranded viral DNA for integration into host chromosomes. Proteins in this subfamily contain long terminal repeats (LTRs) and are multifunctional enzymes with RNA-directed DNA polymerase, DNA directed DNA polymerase, and ribonuclease hybrid (RNase H) activities. The viral RNA genome enters the cytoplasm as part of a nucleoprotein complex, and the process of reverse transcription generates in the cytoplasm forming a linear DNA duplex via an intricate series of steps. This duplex DNA is colinear with its RNA template, but contains terminal duplications known as LTRs that are not present in viral RNA. It has been proposed that two specialized template switches, known as strand-transfer reactions or "jumps", are required to generate the LTRs.
Probab=21.21 E-value=71 Score=27.23 Aligned_cols=31 Identities=23% Similarity=0.131 Sum_probs=19.8
Q ss_pred EEEEEECCeEeEeeeccCCCCChhHHHHHHH
Q 027523 175 AFEVYCNDDLVFSKLKEGRFPGEIELKDLVA 205 (222)
Q Consensus 175 aFEV~vng~LV~SKl~~grfP~~~EL~~~I~ 205 (222)
..++|+||-+|+|+-.+...-..++++++++
T Consensus 159 ~~~~Y~DDili~s~~~~~~~~~l~~v~~~l~ 189 (213)
T cd01645 159 VIYHYMDDILIASDLEGQLREIYEELRQTLL 189 (213)
T ss_pred EEEEEcCCEEEEcCCHHHHHHHHHHHHHHHH
Confidence 4689999999999887543333333333333
No 63
>PF08544 GHMP_kinases_C: GHMP kinases C terminal ; InterPro: IPR013750 This domain is found in homoserine kinases (2.7.1.39 from EC), galactokinases (2.7.1.6 from EC) and mevalonate kinases (2.7.1.36 from EC). These kinases make up the GHMP kinase superfamily of ATP-dependent enzymes []. These enzymes are involved in the biosynthesis of isoprenes and amino acids as well as in carbohydrate metabolism. The C-terminal domain of homoserine kinase has a central alpha-beta plait fold and an insertion of four helices, which, together with the N-terminal fold, create a novel nucleotide binding fold [].; PDB: 2R3V_C 4EMD_A 4DXL_A 4ED4_A 2GS8_A 1K47_E 3GON_A 3K17_B 1PIE_A 2AJ4_A ....
Probab=20.67 E-value=1.7e+02 Score=20.40 Aligned_cols=31 Identities=23% Similarity=0.230 Sum_probs=23.0
Q ss_pred ccCCccEEEEEecCCCCchhhHHHHHHHHHHhCCC
Q 027523 61 GIGYGSTVNINFCASCSYRGTAITMKRMLETQFPG 95 (222)
Q Consensus 61 ~~~~g~tV~i~YC~sCgY~~~f~~lk~~L~~~yP~ 95 (222)
|.|-|++|-..+ --+...+++++.++++|++
T Consensus 55 GsG~G~~v~~l~----~~~~~~~~v~~~l~~~~~~ 85 (85)
T PF08544_consen 55 GSGGGPTVFALC----KDEDDAERVAEALREHYKN 85 (85)
T ss_dssp TTSSSSEEEEEE----SSHHHHHHHHHHHHHHTH-
T ss_pred CCCCCCeEEEEE----CCHHHHHHHHHHHHHhCCC
Confidence 335599986653 3478889999999999875
No 64
>PRK14944 DNA polymerase III subunit beta; Provisional
Probab=20.56 E-value=1.2e+02 Score=28.39 Aligned_cols=23 Identities=22% Similarity=0.339 Sum_probs=18.5
Q ss_pred EEECCeEeEeeeccCCCCChhHH
Q 027523 178 VYCNDDLVFSKLKEGRFPGEIEL 200 (222)
Q Consensus 178 V~vng~LV~SKl~~grfP~~~EL 200 (222)
...++..++|||-+|.||+.+.+
T Consensus 229 f~~~~~~~~srLieG~fPdy~~v 251 (375)
T PRK14944 229 LKIDNLWFQTSLLEGNYPQIQEI 251 (375)
T ss_pred EEECCEEEEEEeecccCCChhhh
Confidence 34478888999999999997654
No 65
>cd06881 PX_SNX15_like The phosphoinositide binding Phox Homology domain of Sorting Nexin 15-like proteins. The PX domain is a phosphoinositide (PI) binding module present in many proteins with diverse functions such as cell signaling, vesicular trafficking, protein sorting, and lipid modification, among others. Members of this subfamily have similarity to sorting nexin 15 (SNX15), which contains an N-terminal PX domain and a C-terminal Microtubule Interacting and Trafficking (MIT) domain. SNXs make up the largest group among PX domain containing proteins. They are involved in regulating membrane traffic and protein sorting in the endosomal system. The PX domain of SNXs binds PIs and targets the protein to PI-enriched membranes. SNX15 plays a role in protein trafficking processes in the endocytic pathway and the trans-Golgi network. The PX domain of SNX15 interacts with the PDGF receptor and is responsible for the membrane association of the protein. Other members of this subfamily cont
Probab=20.49 E-value=53 Score=25.84 Aligned_cols=32 Identities=13% Similarity=0.224 Sum_probs=24.4
Q ss_pred hHHHHHHHHHHhCCCceeecccCCCChHHHHHH
Q 027523 81 TAITMKRMLETQFPGIDVVLANYPPPLPKRLLA 113 (222)
Q Consensus 81 ~f~~lk~~L~~~yP~i~V~G~nYPpp~~k~~La 113 (222)
.|+.+.+.|++.||++. .+..+||-|.|++++
T Consensus 46 dF~~L~~~L~~~~~~~~-~~~~~P~lP~K~~~g 77 (117)
T cd06881 46 DFKKLHRELSRLHKQLY-LSGSFPPFPKGKYFG 77 (117)
T ss_pred HHHHHHHHHHHHhhhcc-ccCcCCCCCCCcccC
Confidence 67888899999999974 345578888877544
No 66
>cd06867 PX_SNX41_42 The phosphoinositide binding Phox Homology domain of fungal Sorting Nexins 41 and 42. The PX domain is a phosphoinositide (PI) binding module present in many proteins with diverse functions. Sorting nexins (SNXs) make up the largest group among PX domain containing proteins. They are involved in regulating membrane traffic and protein sorting in the endosomal system. The PX domain of SNXs binds PIs and targets the protein to PI-enriched membranes. SNXs differ from each other in PI-binding specificity and affinity, and the presence of other protein-protein interaction domains, which help determine subcellular localization and specific function in the endocytic pathway. Some SNXs are localized in early endosome structures such as clathrin-coated pits, while others are located in late structures of the endocytic pathway. SNX41 and SNX42 (also called Atg20p) form dimers with SNX4, and are required in protein recycling from the sorting endosome (post-Golgi endosome) back
Probab=20.40 E-value=85 Score=24.26 Aligned_cols=32 Identities=22% Similarity=0.430 Sum_probs=22.9
Q ss_pred CchhhHHHHHHHHHHhCCCceeecccCCCChHHHHHHh
Q 027523 77 SYRGTAITMKRMLETQFPGIDVVLANYPPPLPKRLLAK 114 (222)
Q Consensus 77 gY~~~f~~lk~~L~~~yP~i~V~G~nYPpp~~k~~Lak 114 (222)
.|. .|+.+.+.|.+.||+..+ ||-|.|+.+..
T Consensus 33 RYs-dF~~L~~~L~~~~p~~~i-----PplP~K~~~~~ 64 (112)
T cd06867 33 RYS-EFESLRKNLTRLYPTLII-----PPIPEKHSLKD 64 (112)
T ss_pred ccH-HHHHHHHHHHHHCcCCCc-----CCCCCcchhhh
Confidence 343 789999999999999744 45555665543
Done!