Query 027523
Match_columns 222
No_of_seqs 164 out of 458
Neff 4.5
Searched_HMMs 29240
Date Mon Mar 25 18:56:09 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/027523.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/027523hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2oka_A Hypothetical protein; P 99.9 1.9E-25 6.4E-30 174.9 9.0 87 65-219 5-93 (104)
2 2fa8_A Hypothetical protein AT 99.9 2.9E-25 9.9E-30 174.0 7.9 86 66-219 8-95 (105)
3 2npb_A Selenoprotein W; struct 99.9 1.8E-25 6.3E-30 172.5 6.3 89 64-218 1-90 (96)
4 2p0g_A Selenoprotein W-related 99.9 2.7E-25 9.3E-30 174.3 7.2 87 65-219 3-91 (105)
5 3dex_A SAV_2001; alpha-beta pr 99.9 3.3E-23 1.1E-27 163.0 7.5 88 64-220 11-100 (107)
6 2ojl_A Hypothetical protein; B 99.9 4.6E-23 1.6E-27 162.4 6.5 87 65-219 8-96 (108)
7 2ljk_A Protein C17ORF37; MIEN1 99.9 5.4E-23 1.8E-27 163.9 5.7 89 62-219 21-109 (117)
8 2a4h_A Selenoprotein SEP15; re 95.3 0.022 7.5E-07 45.7 5.1 30 69-100 24-57 (126)
9 4gqo_A LMO0859 protein; virule 94.7 0.04 1.4E-06 48.2 5.5 42 64-105 26-69 (433)
10 2heu_A Sugar ABC transporter, 94.2 0.087 3E-06 46.0 6.5 37 66-103 19-55 (401)
11 3k01_A Acarbose/maltose bindin 93.4 0.16 5.4E-06 44.3 6.8 47 66-115 28-74 (412)
12 2j23_A Thioredoxin; immune pro 93.2 0.26 8.9E-06 36.0 6.6 30 175-208 91-120 (121)
13 3quf_A Extracellular solute-bi 90.8 0.52 1.8E-05 40.9 6.8 44 67-115 31-74 (414)
14 3dwv_A Glutathione peroxidase- 90.8 1.2 4.1E-05 35.1 8.4 35 174-211 151-185 (187)
15 3cmi_A Peroxiredoxin HYR1; thi 88.2 2 6.9E-05 32.9 7.8 35 174-211 136-170 (171)
16 2joi_A Hypothetical protein TA 88.0 2.1 7.1E-05 33.9 7.6 40 61-101 16-55 (118)
17 4g68_A ABC transporter; transp 86.8 0.54 1.9E-05 41.9 4.2 48 65-115 60-110 (456)
18 4hw8_A Bacterial extracellular 85.8 0.96 3.3E-05 39.5 5.2 40 67-108 42-81 (420)
19 3k6v_A Solute-binding protein 85.6 0.69 2.4E-05 41.7 4.3 33 66-100 43-75 (354)
20 2oe3_A Thioredoxin-3; electron 85.3 1.9 6.6E-05 31.2 5.9 28 175-206 86-113 (114)
21 1ub1_A MECP2, attachment regio 84.9 1.5 5E-05 35.4 5.4 38 65-103 55-93 (133)
22 2o8v_B Thioredoxin 1; disulfid 84.9 9.6 0.00033 28.0 11.0 31 175-208 97-127 (128)
23 2vgq_A Maltose-binding peripla 83.5 0.67 2.3E-05 42.0 3.2 39 64-104 18-56 (477)
24 2qry_A Thiamine-binding peripl 81.7 1.4 5E-05 37.2 4.4 47 64-115 21-70 (330)
25 3bci_A Disulfide bond protein 81.2 17 0.00058 28.1 12.1 43 64-106 11-57 (186)
26 2c0g_A ERP29 homolog, windbeut 81.1 0.97 3.3E-05 38.9 3.1 32 66-97 35-68 (248)
27 3u5r_E Uncharacterized protein 79.6 3.2 0.00011 33.6 5.7 36 176-211 148-189 (218)
28 2yjp_A Putative ABC transporte 79.3 1.1 3.6E-05 37.2 2.7 26 79-104 78-105 (291)
29 2f9f_A First mannosyl transfer 77.8 8 0.00027 29.6 7.3 44 69-113 25-70 (177)
30 3kij_A Probable glutathione pe 76.8 23 0.00079 27.1 10.7 31 175-208 139-169 (180)
31 3hz8_A Thiol:disulfide interch 76.3 17 0.00059 28.8 9.1 136 66-211 26-185 (193)
32 4g1u_A Hemin transport system 75.6 0.57 1.9E-05 42.9 0.0 8 47-54 14-21 (357)
33 3onm_A Transcriptional regulat 75.6 1.4 4.7E-05 34.6 2.3 37 63-100 24-60 (238)
34 2xd3_A MALX, maltose/maltodext 75.1 2.1 7.3E-05 37.3 3.6 46 67-116 34-79 (416)
35 1xfl_A Thioredoxin H1; AT3G510 74.8 13 0.00044 27.0 7.4 30 175-208 94-123 (124)
36 1r26_A Thioredoxin; redox-acti 73.6 8.8 0.0003 28.2 6.3 31 175-209 93-123 (125)
37 3uau_A JLPA, surface-exposed l 72.9 2.9 9.9E-05 38.0 3.9 19 85-103 45-65 (379)
38 1tvm_A PTS system, galactitol- 72.0 6.7 0.00023 29.5 5.3 28 67-95 21-48 (113)
39 1svj_A Potassium-transporting 71.1 2 7E-05 34.5 2.3 31 59-90 14-46 (156)
40 3ha9_A Uncharacterized thiored 69.0 32 0.0011 25.4 9.0 39 66-104 39-77 (165)
41 3oti_A CALG3; calicheamicin, T 68.2 2.4 8.2E-05 36.6 2.3 25 68-92 21-47 (398)
42 3ed3_A Protein disulfide-isome 67.9 24 0.00081 30.2 8.6 16 195-210 128-143 (298)
43 3rlk_A A1 protein; beta-barrel 67.6 2.5 8.6E-05 35.3 2.2 14 35-48 2-15 (192)
44 3hd5_A Thiol:disulfide interch 67.6 41 0.0014 26.0 10.4 30 66-95 27-56 (195)
45 3f4s_A Alpha-DSBA1, putative u 67.5 52 0.0018 27.2 11.6 147 60-209 35-211 (226)
46 3qfq_A Large T antigen; origin 66.3 6.3 0.00021 31.8 4.2 45 46-93 10-57 (135)
47 3h93_A Thiol:disulfide interch 65.8 40 0.0014 26.1 8.8 138 66-210 27-185 (192)
48 3osr_A Maltose-binding peripla 65.4 11 0.00038 36.4 6.5 38 64-103 39-76 (653)
49 1w4v_A Thioredoxin, mitochondr 64.7 16 0.00054 26.0 5.9 31 175-208 88-118 (119)
50 2kn9_A Rubredoxin; metalloprot 64.5 5.1 0.00017 29.6 3.1 13 67-79 24-36 (81)
51 2hdi_B Colicin-IA; outer membr 63.9 1.5 5.2E-05 33.5 0.1 53 49-101 20-90 (113)
52 3otg_A CALG1; calicheamicin, T 63.6 4.4 0.00015 34.7 3.0 28 65-92 18-47 (412)
53 3oo8_A ABC transporter binding 62.9 5.8 0.0002 34.2 3.7 41 63-104 25-66 (415)
54 3gzg_A Molybdate-binding perip 62.3 5.1 0.00017 33.7 3.1 31 66-99 23-53 (253)
55 3tla_A MCCF; serine protease, 62.3 6.7 0.00023 35.7 4.1 36 61-98 39-77 (371)
56 3dml_A Putative uncharacterize 62.3 22 0.00074 27.1 6.5 35 172-209 76-110 (116)
57 2x7q_A Ca3427, possible thiami 61.5 9 0.00031 32.3 4.6 38 67-106 16-54 (321)
58 4akv_A Sorting nexin-33; trans 60.2 2.8 9.5E-05 38.2 1.2 28 81-113 81-108 (386)
59 2ju5_A Thioredoxin disulfide i 60.2 39 0.0013 25.4 7.7 32 176-210 120-153 (154)
60 3ksx_A Nitrate transport prote 58.9 9.2 0.00031 32.1 4.2 38 65-104 28-66 (324)
61 2p31_A CL683, glutathione pero 58.4 59 0.002 24.8 8.6 32 174-208 149-180 (181)
62 2eke_C Ubiquitin-like protein 58.0 18 0.00063 27.3 5.4 25 64-88 39-63 (106)
63 1zxj_A MPN555, hypothetical pr 57.6 12 0.00041 32.0 4.7 58 37-96 6-72 (218)
64 1xg8_A Hypothetical protein SA 57.3 6.5 0.00022 30.8 2.7 28 72-99 18-49 (111)
65 2v84_A Spermidine/putrescine A 56.0 7.8 0.00027 32.8 3.2 35 65-104 24-58 (343)
66 2w7y_A FCSSBP, probable sugar 55.8 9 0.00031 33.3 3.7 27 79-105 56-82 (430)
67 2yln_A Putative ABC transporte 55.5 14 0.0005 30.1 4.7 26 78-104 79-104 (283)
68 4e3z_A Putative oxidoreductase 54.4 24 0.00084 28.9 6.0 48 65-115 50-98 (272)
69 3mng_A Peroxiredoxin-5, mitoch 54.1 6.8 0.00023 31.2 2.4 33 172-205 138-171 (173)
70 2gek_A Phosphatidylinositol ma 53.7 7.7 0.00026 32.7 2.8 29 64-92 17-51 (406)
71 1uj8_A ORF3, hypothetical prot 53.0 12 0.00041 27.5 3.3 18 81-98 18-35 (77)
72 2r9r_B Paddle chimera voltage 53.0 2.9 9.8E-05 39.4 0.0 13 157-169 248-260 (514)
73 3kl4_B DPAP B, YSCV, signal pe 51.8 4.3 0.00015 26.2 0.7 7 33-39 35-41 (42)
74 3p7i_A PHND, subunit of alkylp 49.4 13 0.00043 32.3 3.6 32 67-99 15-49 (321)
75 3cio_A ETK, tyrosine-protein k 49.4 3.5 0.00012 35.6 0.0 16 78-93 84-99 (299)
76 2gjv_A Putative cytoplasmic pr 49.2 12 0.00039 31.5 3.1 23 78-100 27-49 (175)
77 3kgk_A Arsenical resistance op 49.1 17 0.0006 28.1 3.9 25 177-205 75-99 (110)
78 4dve_A Biotin transporter BIOY 49.0 3.8 0.00013 34.6 0.2 8 128-135 79-86 (198)
79 1d2d_A TRNA synthetase, tRNA l 48.8 7.6 0.00026 26.8 1.6 22 17-39 37-58 (59)
80 3llq_A Aquaporin Z 2; aquapori 48.7 3.7 0.00013 35.8 0.0 8 34-41 10-17 (256)
81 3ktb_A Arsenical resistance op 48.4 17 0.00056 28.0 3.7 24 177-204 78-101 (106)
82 3mx7_A FAS apoptotic inhibitor 48.4 13 0.00044 28.0 3.0 19 170-188 24-42 (90)
83 3l9v_A Putative thiol-disulfid 47.0 1E+02 0.0035 24.1 10.4 143 65-213 15-187 (189)
84 3noy_A 4-hydroxy-3-methylbut-2 46.9 4.3 0.00015 37.6 0.1 90 67-208 268-360 (366)
85 2xci_A KDO-transferase, 3-deox 46.5 10 0.00035 33.2 2.5 28 70-98 44-71 (374)
86 1d1d_A Protein (capsid protein 46.4 4.2 0.00014 35.9 0.0 45 79-123 38-90 (262)
87 4faj_A PRGZ; substrate binding 46.0 4.3 0.00015 37.5 0.0 123 73-218 38-160 (564)
88 2lie_A CCL2 lectin; sugar bind 51.7 4.3 0.00015 33.1 0.0 12 173-184 111-122 (153)
89 2es4_D Lipase chaperone; prote 45.7 4.3 0.00015 36.7 0.0 12 83-94 106-117 (332)
90 2kgr_A Intersectin-1; structur 45.1 13 0.00046 27.1 2.7 6 23-28 94-99 (111)
91 3gyk_A 27KDA outer membrane pr 45.1 95 0.0033 23.3 12.6 41 66-106 24-64 (175)
92 2q58_A Fragment, farnesyl pyro 44.7 24 0.00081 31.8 4.7 20 77-96 27-46 (368)
93 2qj6_A Toxin A; clostridial re 44.3 4.7 0.00016 35.9 0.0 8 34-41 5-12 (332)
94 2zzj_A Glucuronan lyase A; bet 43.8 17 0.00058 31.7 3.4 23 172-194 164-186 (238)
95 3gmf_A Protein-disulfide isome 43.7 1.3E+02 0.0044 24.3 14.8 47 65-111 16-66 (205)
96 1xhj_A Nitrogen fixation prote 43.7 36 0.0012 25.1 4.8 33 65-97 37-74 (88)
97 2x7m_A Archaemetzincin; metall 43.6 23 0.00077 29.6 4.1 42 64-106 19-63 (195)
98 2j6v_A UV endonuclease, UVDE; 43.0 7.8 0.00027 33.9 1.2 12 80-91 58-69 (301)
99 3ixr_A Bacterioferritin comigr 43.0 18 0.00061 28.1 3.2 35 174-208 143-177 (179)
100 3gn3_A Putative protein-disulf 43.0 20 0.00067 28.7 3.5 54 63-116 12-70 (182)
101 4g2c_A DYP2; DYE peroxidase, o 42.9 5.1 0.00017 38.2 0.0 45 73-117 35-89 (493)
102 1tjn_A Sirohydrochlorin cobalt 42.5 56 0.0019 25.5 6.1 37 79-115 40-79 (156)
103 2ew1_A RAS-related protein RAB 42.3 6.6 0.00023 31.1 0.6 13 196-208 175-187 (201)
104 2qu8_A Putative nucleolar GTP- 42.2 8.4 0.00029 30.7 1.2 13 196-208 191-203 (228)
105 4axs_A Carbamate kinase; oxido 41.8 5.4 0.00019 35.9 0.0 13 81-93 50-62 (332)
106 3gha_A Disulfide bond formatio 41.6 1.3E+02 0.0045 23.9 13.4 49 59-107 24-76 (202)
107 2haq_A Cyclophilin; rotamase, 41.6 25 0.00084 28.7 3.9 29 59-89 20-48 (172)
108 3kg0_A Snoab; polyketide, anth 41.6 28 0.00095 26.6 4.0 33 63-96 21-56 (128)
109 2d2a_A SUFA protein; iron-sulf 41.4 18 0.00063 28.7 3.1 16 79-94 45-60 (145)
110 3rsc_A CALG2; TDP, enediyne, s 41.2 16 0.00056 31.3 3.0 25 68-92 21-47 (415)
111 3tcm_A Alanine aminotransferas 41.2 5.6 0.00019 36.2 0.0 26 182-207 204-231 (500)
112 4hps_A Pyrrolidone-carboxylate 41.1 38 0.0013 29.0 5.2 27 72-98 62-88 (228)
113 2c07_A 3-oxoacyl-(acyl-carrier 40.9 5.7 0.0002 33.1 0.0 20 191-210 248-267 (285)
114 1syr_A Thioredoxin; SGPP, stru 40.7 87 0.003 21.5 8.2 30 175-208 82-111 (112)
115 3m63_B Ubiquitin domain-contai 40.7 21 0.00071 26.1 3.1 30 64-93 27-61 (101)
116 3qt1_I DNA-directed RNA polyme 40.7 4.6 0.00016 32.1 -0.6 13 69-81 45-57 (133)
117 1oix_A RAS-related protein RAB 40.7 8 0.00027 30.0 0.8 27 67-94 29-55 (191)
118 2l4h_A Calcium and integrin-bi 40.5 5.9 0.0002 31.8 0.0 14 193-206 144-157 (214)
119 3b9f_I Protein C inhibitor; mi 40.1 6 0.00021 35.8 0.0 16 193-208 150-165 (395)
120 3vu7_H DNA repair protein REV1 39.9 10 0.00034 29.9 1.3 14 80-93 36-49 (124)
121 1jxh_A Phosphomethylpyrimidine 39.9 6.1 0.00021 33.4 0.0 7 95-101 96-102 (288)
122 3oc3_A Helicase MOT1, MOT1; re 39.5 6.2 0.00021 39.5 0.0 19 191-209 119-137 (800)
123 2zyd_A 6-phosphogluconate dehy 39.3 6.8 0.00023 36.5 0.2 7 107-113 91-97 (480)
124 4g9p_A 4-hydroxy-3-methylbut-2 39.0 13 0.00046 34.8 2.1 35 172-209 365-399 (406)
125 2wte_A CSA3; antiviral protein 38.9 33 0.0011 29.1 4.5 44 49-92 13-63 (244)
126 2c0d_A Thioredoxin peroxidase 38.7 6.5 0.00022 32.4 0.0 36 174-209 148-184 (221)
127 3icu_A E3 ubiquitin-protein li 38.6 12 0.00042 31.3 1.7 41 36-76 5-45 (194)
128 1pd6_A Cardiac MYBP-C;, myosin 38.4 13 0.00043 26.3 1.5 12 171-182 82-93 (104)
129 2axq_A Saccharopine dehydrogen 38.1 6.9 0.00024 36.4 0.1 6 175-180 170-175 (467)
130 3osq_A Maltose-binding peripla 38.1 38 0.0013 32.6 5.3 38 64-103 39-76 (661)
131 2dvz_A BUGE, putative exported 38.0 21 0.00073 31.1 3.2 22 81-103 36-57 (314)
132 1ilo_A Conserved hypothetical 37.9 76 0.0026 20.1 7.4 23 176-204 54-76 (77)
133 3dfz_A SIRC, precorrin-2 dehyd 37.8 6.7 0.00023 33.3 -0.1 24 182-208 138-161 (223)
134 3tc3_A UV damage endonuclease; 37.7 9.9 0.00034 34.2 1.0 12 63-74 17-28 (310)
135 2vup_A Glutathione peroxidase- 37.7 1.4E+02 0.0046 22.9 10.7 35 174-211 153-187 (190)
136 1wue_A Mandelate racemase/muco 37.5 7 0.00024 34.9 0.0 11 198-208 190-200 (386)
137 3rlb_A THIT; S-component, ECF 37.3 7 0.00024 32.7 0.0 6 143-148 153-158 (192)
138 1kr4_A Protein TM1056, CUTA; s 37.2 20 0.0007 28.2 2.7 31 61-92 16-46 (125)
139 3dxb_A Thioredoxin N-terminall 37.1 1.5E+02 0.0053 23.4 11.6 36 175-213 87-122 (222)
140 3a5i_A Flagellar biosynthesis 36.8 7.3 0.00025 36.1 0.0 15 172-186 111-125 (389)
141 1wuf_A Hypothetical protein LI 36.7 7.3 0.00025 35.0 0.0 11 198-208 190-200 (393)
142 3odm_A Pepcase, PEPC, phosphoe 36.6 7.3 0.00025 37.9 0.0 57 79-142 42-109 (560)
143 4f3p_A Glutamine-binding perip 36.6 34 0.0012 26.7 4.0 25 78-103 45-69 (249)
144 3c0t_B Mediator of RNA polymer 36.6 4.8 0.00016 24.7 -0.8 13 17-29 10-22 (33)
145 3gl3_A Putative thiol:disulfid 36.4 45 0.0015 24.0 4.3 40 175-215 109-148 (152)
146 1uoz_A Putative cellulase; hyd 36.3 10 0.00035 34.3 0.9 8 197-204 188-195 (315)
147 3qwq_B Adnectin; cell surface 36.3 8 0.00027 28.4 0.2 11 31-41 104-114 (114)
148 3ces_A MNMG, tRNA uridine 5-ca 36.2 8.2 0.00028 37.8 0.3 21 34-54 4-26 (651)
149 2oar_A Large-conductance mecha 36.0 7.6 0.00026 32.5 0.0 51 78-137 21-77 (174)
150 3av0_A DNA double-strand break 35.8 56 0.0019 28.7 5.7 24 81-104 48-72 (386)
151 4aaj_A N-(5'-phosphoribosyl)an 35.8 9.8 0.00034 32.4 0.7 20 130-149 92-111 (228)
152 1zye_A Thioredoxin-dependent p 35.4 49 0.0017 26.6 4.9 36 174-209 149-185 (220)
153 3c3r_A Programmed cell death 6 35.3 7.9 0.00027 35.0 0.0 12 83-94 40-51 (380)
154 3o5c_A Cytochrome C551 peroxid 34.9 7.6 0.00026 34.9 -0.2 18 189-206 251-268 (320)
155 1vkh_A Putative serine hydrola 34.7 72 0.0025 25.2 5.7 12 78-89 58-69 (273)
156 2pvf_A Fibroblast growth facto 34.7 52 0.0018 27.4 5.0 14 195-208 304-317 (334)
157 2kan_A Uncharacterized protein 34.5 37 0.0013 24.3 3.6 23 67-93 26-48 (94)
158 1k7k_A Hypothetical protein YG 34.3 37 0.0013 29.0 4.1 50 69-122 25-83 (221)
159 1qwz_A NPQTN specific sortase 34.3 13 0.00045 31.7 1.2 14 194-207 177-190 (235)
160 2dw3_A Intrinsic membrane prot 34.2 58 0.002 23.9 4.5 25 6-30 35-59 (77)
161 2ivd_A PPO, PPOX, protoporphyr 33.9 8.6 0.00029 34.0 0.0 7 35-41 3-9 (478)
162 3plu_A Ubiquitin-like modifier 33.9 18 0.0006 27.2 1.7 20 74-93 36-55 (93)
163 2p5s_A RAS and EF-hand domain 33.7 11 0.00038 29.1 0.6 11 68-78 29-39 (199)
164 2qrj_A Saccharopine dehydrogen 33.6 8.8 0.0003 35.5 0.0 17 63-79 52-68 (394)
165 2kdb_A Homocysteine-responsive 33.1 28 0.00094 25.7 2.7 19 78-96 44-62 (99)
166 1z0s_A Probable inorganic poly 33.0 35 0.0012 29.9 3.8 21 172-192 155-175 (278)
167 1wc3_A Adenylate cyclase; solu 32.9 23 0.0008 28.8 2.5 15 67-81 27-41 (219)
168 2lt9_A Protein SLC8A3; NCX, NC 38.8 9.4 0.00032 31.1 0.0 9 66-74 42-50 (157)
169 3s94_A LRP-6, low-density lipo 32.5 9.9 0.00034 36.2 0.2 7 35-41 2-8 (619)
170 1bpv_A Titin, A71, connectin; 32.4 16 0.00056 26.5 1.3 6 68-73 45-50 (112)
171 3b0g_A NII3, nitrite reductase 32.3 9.5 0.00032 36.7 0.0 6 82-87 76-81 (591)
172 2f5x_A BUGD; periplasmic bindi 32.0 40 0.0014 29.3 4.0 23 79-102 32-54 (312)
173 3iot_A Maltose-binding protein 31.9 9.8 0.00033 33.7 0.0 7 60-66 438-444 (449)
174 2bgs_A Aldose reductase; holoe 31.8 9.8 0.00033 33.8 0.0 11 80-90 61-71 (344)
175 4b1m_A Levanase; hydrolase, CB 31.7 9.9 0.00034 30.6 0.0 19 172-190 141-159 (185)
176 1jak_A Beta-N-acetylhexosamini 31.6 20 0.00068 33.9 2.1 15 193-207 169-183 (512)
177 4aq4_A SN-glycerol-3-phosphate 31.6 90 0.0031 26.3 6.1 47 69-117 7-55 (419)
178 4iiu_A 3-oxoacyl-[acyl-carrier 31.5 96 0.0033 25.1 6.1 20 191-210 231-250 (267)
179 1hxv_A Trigger factor; FKBP fo 30.6 23 0.00077 26.5 1.9 17 60-76 28-44 (113)
180 2qf7_A Pyruvate carboxylase pr 30.3 11 0.00037 39.3 0.0 18 83-100 83-100 (1165)
181 3nk4_C ZONA pellucida 3; ferti 30.3 19 0.00065 21.6 1.1 7 33-39 23-29 (30)
182 3rdd_A Peptidyl-prolyl CIS-tra 30.3 52 0.0018 26.9 4.2 29 173-206 128-163 (184)
183 1p99_A Hypothetical protein PG 30.1 60 0.0021 28.0 4.8 35 66-104 39-73 (295)
184 2lwx_A Zuotin; J-protein, mole 29.9 11 0.00037 29.4 -0.0 10 48-57 14-23 (108)
185 4egs_A Ribose 5-phosphate isom 29.8 50 0.0017 26.7 4.0 33 67-99 34-69 (180)
186 1elj_A Maltodextrin-binding pr 29.7 61 0.0021 27.5 4.7 38 67-104 5-44 (381)
187 3a4u_B Multiple coagulation fa 29.6 11 0.00038 28.4 0.0 15 192-206 106-120 (143)
188 2uvj_A TOGB, ABC type periplas 29.5 63 0.0022 27.6 4.8 41 65-105 5-45 (408)
189 3k9f_C DNA topoisomerase 4 sub 29.4 11 0.00039 33.4 0.0 21 108-128 84-104 (268)
190 2l8s_A Integrin alpha-1; trans 29.3 54 0.0019 22.4 3.4 10 21-30 33-42 (54)
191 3d8t_A Uroporphyrinogen-III sy 29.3 66 0.0023 27.0 4.8 19 82-100 44-68 (286)
192 4e4j_A Arginine deiminase; L-a 29.2 11 0.00038 34.5 -0.1 17 80-98 81-97 (433)
193 3mdu_A N-formimino-L-glutamate 29.2 43 0.0015 29.7 3.8 36 172-210 415-450 (453)
194 2av4_A Thioredoxin-like protei 29.2 62 0.0021 26.3 4.4 43 172-215 95-145 (160)
195 2r5o_A Putative ATP binding co 29.1 12 0.0004 30.2 0.0 9 172-180 135-143 (188)
196 2f4l_A Acetamidase, putative; 29.1 13 0.00045 33.2 0.4 24 54-78 27-50 (297)
197 3tbn_A Putative uncharacterize 29.1 23 0.00078 26.5 1.6 10 72-81 31-40 (87)
198 3aqj_A GPV, baseplate assembly 29.0 22 0.00074 27.7 1.6 8 36-43 3-10 (134)
199 2i81_A 2-Cys peroxiredoxin; st 29.0 62 0.0021 25.9 4.4 36 173-208 143-179 (213)
200 3idv_A Protein disulfide-isome 28.9 2E+02 0.0069 22.2 8.5 34 174-211 206-239 (241)
201 3p8b_A DNA-directed RNA polyme 28.9 13 0.00044 27.6 0.2 20 63-82 16-35 (81)
202 1l2j_A Estrogen receptor beta; 28.8 1.5E+02 0.0052 24.8 7.0 29 110-138 59-89 (271)
203 2vmh_A GH95CBM51, fibronectin 28.8 34 0.0012 27.3 2.7 17 172-188 89-105 (151)
204 1k8w_A TRNA pseudouridine synt 28.8 12 0.00041 34.0 0.0 8 188-195 215-222 (327)
205 3m95_A Autophagy related prote 28.8 11 0.00038 29.7 -0.2 35 69-104 10-45 (125)
206 3ia1_A THIO-disulfide isomeras 28.8 46 0.0016 24.1 3.3 35 176-213 114-148 (154)
207 2rem_A Disulfide oxidoreductas 28.5 1.9E+02 0.0065 21.8 11.3 34 66-99 27-61 (193)
208 2kjr_A CG11242; UBL, ubiquitin 28.4 51 0.0018 24.0 3.5 14 80-93 38-51 (95)
209 3tut_A RNA 3'-terminal phospha 28.2 12 0.00042 34.3 0.0 18 116-133 119-136 (358)
210 3m9j_A Thioredoxin; oxidoreduc 28.2 1.3E+02 0.0045 19.9 8.5 35 65-99 21-55 (105)
211 2i7a_A Calpain 13; calcium-dep 28.1 33 0.0011 26.7 2.5 14 81-94 22-35 (174)
212 2qv7_A Diacylglycerol kinase D 27.8 66 0.0023 27.8 4.6 32 67-98 26-60 (337)
213 4ddd_A Immunogenic protein; ss 27.8 70 0.0024 27.4 4.8 28 78-105 45-75 (327)
214 3ec7_A Putative dehydrogenase; 27.8 45 0.0015 29.0 3.6 13 87-99 40-52 (357)
215 4amg_A Snogd; transferase, pol 27.6 24 0.00081 29.9 1.7 26 67-92 22-49 (400)
216 3okg_A Restriction endonucleas 27.5 20 0.00067 30.9 1.2 21 35-55 3-24 (412)
217 2f8a_A Glutathione peroxidase 27.1 45 0.0015 26.8 3.2 32 175-209 176-207 (208)
218 2apo_A Probable tRNA pseudouri 27.1 13 0.00045 33.9 0.0 16 192-207 137-152 (357)
219 4f0l_A Amidohydrolase; ssgcid, 27.0 44 0.0015 29.3 3.4 33 174-209 422-454 (458)
220 2ygr_A Uvrabc system protein A 26.9 13 0.00046 38.3 0.0 14 172-185 193-206 (993)
221 3hvu_A Hypoxanthine phosphorib 26.7 33 0.0011 28.5 2.4 42 49-95 16-57 (204)
222 2jeo_A Uridine-cytidine kinase 26.6 18 0.00063 29.5 0.8 11 196-206 181-191 (245)
223 2a2p_A Selenoprotein M, SELM p 26.5 37 0.0013 27.0 2.5 36 63-99 12-50 (129)
224 3t21_A Endo-type membrane-boun 26.5 14 0.00047 30.8 0.0 18 153-170 115-132 (206)
225 3u1h_A 3-isopropylmalate dehyd 26.5 17 0.00057 33.8 0.5 37 58-105 28-64 (390)
226 1u83_A Phosphosulfolactate syn 26.4 40 0.0014 30.0 2.9 37 49-94 24-64 (276)
227 1uh6_A Ubiquitin-like 5; beta- 26.2 63 0.0022 24.2 3.7 15 79-93 48-62 (100)
228 3jtz_A Integrase; four strande 26.1 14 0.00048 26.9 0.0 9 32-40 80-88 (88)
229 2l7b_A Apolipoprotein E, APO-E 25.8 14 0.00049 32.9 0.0 8 105-112 31-38 (307)
230 2kk0_A AT-rich interactive dom 25.7 43 0.0015 26.4 2.8 39 43-92 9-49 (145)
231 3hkx_A Amidase; alpha-beta-BET 25.7 59 0.002 27.3 3.9 16 77-92 34-49 (283)
232 2kj5_A Phage integrase; GFT PS 25.7 44 0.0015 23.1 2.6 8 33-40 108-115 (116)
233 3q8g_A CRAL-TRIO domain-contai 25.5 22 0.00077 31.1 1.2 14 79-92 40-53 (320)
234 2k4z_A DSRR; ISCA/SUFA/HESB li 25.5 75 0.0026 24.3 4.1 14 79-92 27-40 (125)
235 1zbm_A Hypothetical protein AF 25.5 18 0.00062 29.4 0.6 7 65-71 37-43 (280)
236 2fgx_A Putative thioredoxin; N 25.5 53 0.0018 24.5 3.1 29 66-94 30-58 (107)
237 4dt4_A FKBP-type 16 kDa peptid 25.4 63 0.0021 26.2 3.8 14 62-75 25-38 (169)
238 4f27_A Clumping factor B; DEV- 25.4 15 0.00051 32.0 0.0 6 35-40 5-10 (363)
239 2j1l_A RHO-related GTP-binding 25.3 31 0.001 27.1 1.9 16 66-81 33-48 (214)
240 3vmk_A 3-isopropylmalate dehyd 25.3 22 0.00076 32.7 1.1 36 60-106 20-55 (375)
241 1vjv_A Ubiquitin carboxyl-term 25.2 22 0.00074 31.4 1.0 10 199-208 187-196 (415)
242 2kgo_A Uncharacterized protein 25.2 37 0.0013 26.1 2.2 15 71-85 57-71 (108)
243 4akr_B F-actin-capping protein 25.1 15 0.00052 33.0 0.0 46 64-111 61-114 (290)
244 2krk_A 26S protease regulatory 25.1 27 0.00094 24.9 1.4 9 196-204 70-78 (86)
245 2vng_A CPE0329; family 51 carb 25.1 42 0.0014 27.8 2.7 16 175-190 109-124 (180)
246 2obi_A PHGPX, GPX-4, phospholi 25.0 83 0.0028 23.9 4.3 31 174-207 152-182 (183)
247 1gxe_A Myosin binding protein 24.4 24 0.00081 26.8 1.0 14 63-77 31-44 (139)
248 2gn4_A FLAA1 protein, UDP-GLCN 24.3 24 0.00082 30.3 1.1 15 195-209 219-233 (344)
249 4emh_A Probable U6 snRNA-assoc 24.3 26 0.00088 26.5 1.2 18 63-80 24-41 (105)
250 2jfq_A Glutamate racemase; cel 24.3 68 0.0023 27.5 4.0 14 84-97 36-49 (286)
251 3hju_A Monoglyceride lipase; a 24.1 1.6E+02 0.0054 23.5 6.0 15 78-92 72-86 (342)
252 2fv8_A H6, RHO-related GTP-bin 24.1 17 0.00059 28.2 0.2 14 196-209 186-199 (207)
253 3qfa_C Thioredoxin; protein-pr 24.0 1.9E+02 0.0063 20.2 7.5 34 66-99 33-66 (116)
254 4eo0_A Attachment protein G3P; 23.8 18 0.0006 27.9 0.2 10 31-40 106-115 (115)
255 3p4t_A Putative acyl-COA dehyd 23.6 18 0.00063 31.9 0.3 12 83-94 35-46 (403)
256 2kk8_A Uncharacterized protein 23.6 90 0.0031 21.7 3.9 25 65-93 20-44 (84)
257 2vlu_A Thioredoxin, thioredoxi 23.4 1.8E+02 0.0063 19.9 9.3 31 175-209 90-120 (122)
258 4emk_A U6 snRNA-associated SM- 23.4 7 0.00024 29.2 -2.2 12 64-75 29-40 (94)
259 1vlc_A 3-isopropylmalate dehyd 23.3 16 0.00055 33.5 -0.2 37 59-106 18-54 (366)
260 2wgn_B Inhibitor of cysteine p 23.2 98 0.0034 24.1 4.4 21 63-83 40-62 (132)
261 3lnc_A Guanylate kinase, GMP k 23.2 21 0.00071 28.7 0.5 9 58-66 32-40 (231)
262 2gco_A H9, RHO-related GTP-bin 23.2 59 0.002 24.9 3.1 27 67-94 25-51 (201)
263 3con_A GTPase NRAS; structural 23.1 39 0.0013 25.3 2.0 16 66-81 20-35 (190)
264 2y8u_A Chitin deacetylase; hyd 23.1 57 0.0019 27.0 3.2 15 77-91 42-56 (230)
265 2znm_A Thiol:disulfide interch 23.0 2.5E+02 0.0085 21.3 10.0 39 66-105 24-62 (195)
266 3bux_B E3 ubiquitin-protein li 23.0 23 0.00077 32.4 0.7 8 33-40 13-20 (329)
267 3d1g_A DNA polymerase III subu 23.0 91 0.0031 27.6 4.7 26 174-199 221-246 (366)
268 2kjq_A DNAA-related protein; s 22.9 32 0.0011 26.3 1.5 8 73-80 42-49 (149)
269 2l7r_A Ubiquitin-like protein 22.8 39 0.0013 24.0 1.9 15 79-93 37-51 (93)
270 3auf_A Glycinamide ribonucleot 22.8 1E+02 0.0034 26.0 4.7 30 67-97 22-51 (229)
271 2grj_A Dephospho-COA kinase; T 22.8 13 0.00043 30.2 -0.9 9 58-66 17-25 (192)
272 2kdi_A Ubiquitin, vacuolar pro 22.7 95 0.0032 22.9 4.1 26 64-93 18-43 (114)
273 2j8k_A NP275-NP276; pentapepti 22.7 24 0.00083 28.6 0.8 6 35-40 5-10 (201)
274 1veh_A NIFU-like protein hirip 22.6 50 0.0017 24.5 2.4 33 65-97 44-81 (92)
275 4ar0_A Type IV pilus biogenesi 22.5 96 0.0033 23.8 4.2 10 63-72 29-38 (128)
276 2q73_A MAZG, hypothetical prot 22.5 18 0.00062 26.5 0.0 6 34-39 94-99 (100)
277 2rhc_B Actinorhodin polyketide 22.5 38 0.0013 28.0 2.0 20 191-210 239-258 (277)
278 2b5x_A YKUV protein, TRXY; thi 22.4 2E+02 0.0069 20.0 5.9 28 180-210 119-146 (148)
279 2kcc_A Acetyl-COA carboxylase 22.3 36 0.0012 23.8 1.5 6 33-38 77-82 (84)
280 3cpt_A Mitogen-activated prote 22.3 18 0.00063 29.3 0.0 16 81-96 20-38 (143)
281 2ekg_A Proline dehydrogenase/d 22.2 19 0.00064 32.4 0.0 13 108-120 129-141 (327)
282 1mgp_A Hypothetical protein TM 22.2 34 0.0012 30.3 1.7 16 67-82 27-42 (313)
283 2l72_A Tgadf, actin depolymeri 22.1 19 0.00064 28.2 0.0 8 81-88 66-73 (139)
284 2j9u_B VPS36, vacuolar protein 22.1 11 0.00039 27.6 -1.2 24 68-91 38-61 (76)
285 3q7a_A Farnesyltransferase alp 22.1 28 0.00094 31.3 1.1 27 63-91 40-66 (349)
286 2hup_A RAS-related protein RAB 22.1 22 0.00074 27.7 0.4 14 67-80 29-42 (201)
287 2iss_D Glutamine amidotransfer 22.1 56 0.0019 26.2 2.9 15 153-167 95-109 (208)
288 2ls0_1 Zoocin A endopeptidase; 22.1 44 0.0015 26.6 2.1 9 37-45 6-14 (128)
289 1qgv_A Spliceosomal protein U5 21.7 1.4E+02 0.0049 22.0 5.0 41 175-215 80-127 (142)
290 4hnl_A Mandelate racemase/muco 21.6 20 0.00067 32.5 0.0 25 114-138 110-136 (421)
291 2wkq_A NPH1-1, RAS-related C3 21.5 22 0.00075 29.4 0.3 6 69-74 35-40 (332)
292 3qtc_A Pyrrolysyl-tRNA synthet 21.5 20 0.00067 30.9 0.0 14 196-209 191-204 (290)
293 2bu3_A ALR0975 protein; phytoc 21.5 20 0.00067 31.5 0.0 16 195-210 158-173 (254)
294 3q9s_A DNA-binding response re 21.4 49 0.0017 26.8 2.4 12 87-98 75-86 (249)
295 3lxw_A GTPase IMAP family memb 21.3 23 0.00078 29.2 0.4 29 69-97 71-107 (247)
296 3fkq_A NTRC-like two-domain pr 21.3 68 0.0023 28.1 3.5 36 64-105 45-80 (373)
297 2ozv_A Hypothetical protein AT 21.1 77 0.0026 26.1 3.6 37 69-111 40-76 (260)
298 1lu4_A Soluble secreted antige 20.9 2.1E+02 0.007 19.7 5.5 37 66-102 26-62 (136)
299 4h1z_A Enolase Q92ZS5; dehydra 20.7 21 0.00071 32.3 0.0 14 198-211 219-232 (412)
300 4gmn_B 60S ribosomal protein L 20.7 30 0.001 23.4 0.7 9 32-40 41-49 (49)
301 1yqb_A Ubiquilin 3; structural 20.7 1.2E+02 0.004 21.8 4.2 15 79-93 41-55 (100)
302 4ec6_A Putative uncharacterize 20.6 21 0.00072 29.5 0.0 6 38-43 5-10 (161)
303 2v73_A CBM40, putative EXO-alp 20.5 86 0.0029 26.3 3.7 19 172-190 116-134 (191)
304 2lfh_A DNA-binding protein inh 20.4 33 0.0011 24.5 1.0 27 63-89 14-40 (68)
305 3qii_A PHD finger protein 20; 20.4 52 0.0018 24.4 2.1 17 61-78 21-37 (85)
306 2qyp_A Proactivator polypeptid 20.2 22 0.00075 25.3 0.0 7 33-39 84-90 (91)
No 1
>2oka_A Hypothetical protein; PAR82, NESG, structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium; 2.50A {Pseudomonas aeruginosa} PDB: 2obk_A
Probab=99.92 E-value=1.9e-25 Score=174.88 Aligned_cols=87 Identities=21% Similarity=0.379 Sum_probs=75.2
Q ss_pred ccEEEEEecCCCCchhhHHHHHHHHHHhCCCc--eeecccCCCChHHHHHHhhhhHHHHHHHHHHhhccccccccCCCCh
Q 027523 65 GSTVNINFCASCSYRGTAITMKRMLETQFPGI--DVVLANYPPPLPKRLLAKVVPAVQIGVIGIVVAGEQIFPMLGMTPP 142 (222)
Q Consensus 65 g~tV~i~YC~sCgY~~~f~~lk~~L~~~yP~i--~V~G~nYPpp~~k~~Lak~v~~~q~~~i~~i~~G~~iF~~lG~~~P 142 (222)
.++|+|+||++|+|+.+|..|++.|+++||+. .|+
T Consensus 5 ~p~V~I~YC~~C~~~~Ra~~laqeLl~tF~~~l~~v~------------------------------------------- 41 (104)
T 2oka_A 5 KPEIVITYCTQCQWLLRAAWLAQELLSTFADDLGKVC------------------------------------------- 41 (104)
T ss_dssp CCEEEEEEETTTTCHHHHHHHHHHHHHHSTTTCSEEE-------------------------------------------
T ss_pred CCEEEEEECCCCCChHHHHHHHHHHHHHcCcccceEE-------------------------------------------
Confidence 47999999999999999999999999999984 343
Q ss_pred hhHhhhhcchhhHHHHHHHHHHhhhhccCCCcEEEEEECCeEeEeeeccCCCCChhHHHHHHHHHhcCCCCCCCcCC
Q 027523 143 PWYYSLRANRFGSIASTWLIGNFLQSFLQSSGAFEVYCNDDLVFSKLKEGRFPGEIELKDLVAKQLASSRLVDGVGS 219 (222)
Q Consensus 143 ~w~~~~~~NK~~~~~~~~~~~n~l~~~l~stGaFEV~vng~LV~SKl~~grfP~~~EL~~~I~~~l~~~~~~~~~~~ 219 (222)
..++++|+|||++||++||||+++||||+.+||+++|+++++|+|+||++.+
T Consensus 42 -------------------------l~P~~~G~FEV~vng~lV~SKk~~ggFPe~~eLkq~Vrd~i~p~r~lgh~d~ 93 (104)
T 2oka_A 42 -------------------------LEPGTGGVFRITCDGVQVWERKADGGFPEAKALKQRVRDRIDPQRDLGHNDR 93 (104)
T ss_dssp -------------------------EEEECTTCEEEEETTEEEEEHHHHTSCCCHHHHHHHHHHHHCSSCC------
T ss_pred -------------------------EEeCCCceEEEEECCEEEEEEecCCCCCCHHHHHHHHHHHhCcCccCCCccc
Confidence 2356899999999999999999999999999999999999999999998763
No 2
>2fa8_A Hypothetical protein ATU0228; ALPH-beta structure, 4 helix bundle, structural genomics, PS protein structure initiative; 1.90A {Agrobacterium tumefaciens str} SCOP: c.47.1.23
Probab=99.92 E-value=2.9e-25 Score=174.00 Aligned_cols=86 Identities=22% Similarity=0.458 Sum_probs=76.3
Q ss_pred cEEEEEecCCCCchhhHHHHHHHHHHhCCCc--eeecccCCCChHHHHHHhhhhHHHHHHHHHHhhccccccccCCCChh
Q 027523 66 STVNINFCASCSYRGTAITMKRMLETQFPGI--DVVLANYPPPLPKRLLAKVVPAVQIGVIGIVVAGEQIFPMLGMTPPP 143 (222)
Q Consensus 66 ~tV~i~YC~sCgY~~~f~~lk~~L~~~yP~i--~V~G~nYPpp~~k~~Lak~v~~~q~~~i~~i~~G~~iF~~lG~~~P~ 143 (222)
++|+|+||.+|+|+.+|..|++.|+++||+. .|+
T Consensus 8 ~~V~I~YC~~C~~~~Ra~~laqeLl~tF~~~l~~V~-------------------------------------------- 43 (105)
T 2fa8_A 8 PRIAIRYCTQCNWLLRAGWMAQEILQTFASDIGEVS-------------------------------------------- 43 (105)
T ss_dssp CEEEEEEETTTTCHHHHHHHHHHHHHHHGGGCSEEE--------------------------------------------
T ss_pred CEEEEEECCCCCCHHHHHHHHHHHHHHcCcccceEE--------------------------------------------
Confidence 7899999999999999999999999999984 343
Q ss_pred hHhhhhcchhhHHHHHHHHHHhhhhccCCCcEEEEEECCeEeEeeeccCCCCChhHHHHHHHHHhcCCCCCCCcCC
Q 027523 144 WYYSLRANRFGSIASTWLIGNFLQSFLQSSGAFEVYCNDDLVFSKLKEGRFPGEIELKDLVAKQLASSRLVDGVGS 219 (222)
Q Consensus 144 w~~~~~~NK~~~~~~~~~~~n~l~~~l~stGaFEV~vng~LV~SKl~~grfP~~~EL~~~I~~~l~~~~~~~~~~~ 219 (222)
..++++|+|||++||++||||+++||||+++||+++|+++++|+|+|+|+.+
T Consensus 44 ------------------------l~P~~~G~FEV~vng~lV~SKk~~ggFPe~~elkq~Vr~~i~p~~~lgh~d~ 95 (105)
T 2fa8_A 44 ------------------------LIPSTGGLFEITVDGTIIWERKRDGGFPGPKELKQRIRDLIDPERDLGHVDR 95 (105)
T ss_dssp ------------------------EEEECTTCEEEEETTEEEEEHHHHTSCCCHHHHHHHHHHHHCTTCCCC----
T ss_pred ------------------------EEcCCCcEEEEEECCEEEEEeccCCCCCCHHHHHHHHHHHhCcCccCCCCCc
Confidence 2256899999999999999999999999999999999999999999998864
No 3
>2npb_A Selenoprotein W; structure, thioredoxin-like fold, oxidoreductase; NMR {Mus musculus}
Probab=99.91 E-value=1.8e-25 Score=172.46 Aligned_cols=89 Identities=21% Similarity=0.345 Sum_probs=78.3
Q ss_pred CccEEEEEecCCCCchhhHHHHHHHHHHhCCC-ceeecccCCCChHHHHHHhhhhHHHHHHHHHHhhccccccccCCCCh
Q 027523 64 YGSTVNINFCASCSYRGTAITMKRMLETQFPG-IDVVLANYPPPLPKRLLAKVVPAVQIGVIGIVVAGEQIFPMLGMTPP 142 (222)
Q Consensus 64 ~g~tV~i~YC~sCgY~~~f~~lk~~L~~~yP~-i~V~G~nYPpp~~k~~Lak~v~~~q~~~i~~i~~G~~iF~~lG~~~P 142 (222)
++.+|+|+||++|||+.+|.++++.|+++||+ +.|+++
T Consensus 1 ~~~~V~I~YC~~C~y~~ra~~laqeLl~~Fp~~l~V~~~----------------------------------------- 39 (96)
T 2npb_A 1 MALAVRVVYSGACGYKPKYLQLKEKLEHEFPGCLDICGE----------------------------------------- 39 (96)
T ss_dssp CCEEEEEECCCCSCHHHHHHHHHHHHHHHSBTTEEEEEC-----------------------------------------
T ss_pred CCCEEEEEEcCCCCCHHHHHHHHHHHHHhCCcceEEEEE-----------------------------------------
Confidence 45789999999999999999999999999999 777663
Q ss_pred hhHhhhhcchhhHHHHHHHHHHhhhhccCCCcEEEEEECCeEeEeeeccCCCCChhHHHHHHHHHhcCCCCCCCcC
Q 027523 143 PWYYSLRANRFGSIASTWLIGNFLQSFLQSSGAFEVYCNDDLVFSKLKEGRFPGEIELKDLVAKQLASSRLVDGVG 218 (222)
Q Consensus 143 ~w~~~~~~NK~~~~~~~~~~~n~l~~~l~stGaFEV~vng~LV~SKl~~grfP~~~EL~~~I~~~l~~~~~~~~~~ 218 (222)
..++++|+|||++||++||||+++||||+.+|++++|++++++.+..+-++
T Consensus 40 -------------------------l~p~~~G~FEV~vng~lV~SKk~~ggFP~~~el~q~I~~~i~~~~~~~~~~ 90 (96)
T 2npb_A 40 -------------------------GTPQVTGFFEVTVAGKLVHSKKRGDGYVDTESKFRKLVTAIKAALAQCQLE 90 (96)
T ss_dssp -------------------------CCSSCCSCCEEEETTEEEEETTTTCCSSCSHHHHHHHHHHHHHHHHHHC--
T ss_pred -------------------------EcCCCCcEEEEEECCEEEEEEecCCCCCChHHHHHHHHHHHhhhhcCCcch
Confidence 124689999999999999999999999999999999999999887655443
No 4
>2p0g_A Selenoprotein W-related protein; VCR75, structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; 2.30A {Vibrio cholerae}
Probab=99.91 E-value=2.7e-25 Score=174.25 Aligned_cols=87 Identities=23% Similarity=0.441 Sum_probs=69.9
Q ss_pred ccEEEEEecCCCCchhhHHHHHHHHHHhCCCc--eeecccCCCChHHHHHHhhhhHHHHHHHHHHhhccccccccCCCCh
Q 027523 65 GSTVNINFCASCSYRGTAITMKRMLETQFPGI--DVVLANYPPPLPKRLLAKVVPAVQIGVIGIVVAGEQIFPMLGMTPP 142 (222)
Q Consensus 65 g~tV~i~YC~sCgY~~~f~~lk~~L~~~yP~i--~V~G~nYPpp~~k~~Lak~v~~~q~~~i~~i~~G~~iF~~lG~~~P 142 (222)
.++|+|+||++|+|+.+|..|++.|+++||+. .|+
T Consensus 3 ~~~V~I~YC~~C~w~~Ra~~laqeLl~tF~~~l~~v~------------------------------------------- 39 (105)
T 2p0g_A 3 KAQIEIYYCRQCNWMLRSAWLSQELLHTFSEEIEYVA------------------------------------------- 39 (105)
T ss_dssp CEEEEEEEETTTTCHHHHHHHHHHHHHHTTTTEEEEE-------------------------------------------
T ss_pred CCEEEEEECCCCCChHHHHHHHHHHHHHcCcccceEE-------------------------------------------
Confidence 47899999999999999999999999999984 332
Q ss_pred hhHhhhhcchhhHHHHHHHHHHhhhhccCCCcEEEEEECCeEeEeeeccCCCCChhHHHHHHHHHhcCCCCCCCcCC
Q 027523 143 PWYYSLRANRFGSIASTWLIGNFLQSFLQSSGAFEVYCNDDLVFSKLKEGRFPGEIELKDLVAKQLASSRLVDGVGS 219 (222)
Q Consensus 143 ~w~~~~~~NK~~~~~~~~~~~n~l~~~l~stGaFEV~vng~LV~SKl~~grfP~~~EL~~~I~~~l~~~~~~~~~~~ 219 (222)
..++++|+|||++||++||||+++||||+.+||+++|+++++|+|+||++.+
T Consensus 40 -------------------------l~P~~~G~FEV~vng~lV~SKk~~ggFPe~~eLkq~Vrd~i~p~r~lgh~d~ 91 (105)
T 2p0g_A 40 -------------------------LHPDTGGRFEIFCNGVQIWERKQEGGFPEAKVLKQRVRDLIDPERDLGHVDR 91 (105)
T ss_dssp -------------------------EEEESTTCEEEEETTEEEEEHHHHTSCCCHHHHHHHHHTTC-----------
T ss_pred -------------------------EEeCCCceEEEEECCEEEEEEecCCCCCCHHHHHHHHHHHhCcCcccCCCCc
Confidence 2356899999999999999999999999999999999999999999998764
No 5
>3dex_A SAV_2001; alpha-beta protein, structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; 2.70A {Streptomyces avermitilis} SCOP: c.47.1.0
Probab=99.88 E-value=3.3e-23 Score=162.97 Aligned_cols=88 Identities=24% Similarity=0.420 Sum_probs=70.9
Q ss_pred CccEEEEEecCCCCchhhHHHHHHHHHHhCCCc--eeecccCCCChHHHHHHhhhhHHHHHHHHHHhhccccccccCCCC
Q 027523 64 YGSTVNINFCASCSYRGTAITMKRMLETQFPGI--DVVLANYPPPLPKRLLAKVVPAVQIGVIGIVVAGEQIFPMLGMTP 141 (222)
Q Consensus 64 ~g~tV~i~YC~sCgY~~~f~~lk~~L~~~yP~i--~V~G~nYPpp~~k~~Lak~v~~~q~~~i~~i~~G~~iF~~lG~~~ 141 (222)
..++|+|+||..|+|..+|..|++.|++.||+. +|++
T Consensus 11 ~~p~V~I~YC~~C~w~lRa~~laqeLl~tF~~~l~eVsL----------------------------------------- 49 (107)
T 3dex_A 11 HTHRVQIEYCTQCRWLPRAAWLAQELLTTFETELTELAL----------------------------------------- 49 (107)
T ss_dssp CCEEEEEEEETTTTCHHHHHHHHHHHHHHSTTTEEEEEE-----------------------------------------
T ss_pred CCCEEEEEECCCCCChHHHHHHHHHHHHhcccccceEEE-----------------------------------------
Confidence 457899999999999999999999999999996 4532
Q ss_pred hhhHhhhhcchhhHHHHHHHHHHhhhhccCCCcEEEEEECCeEeEeeeccCCCCChhHHHHHHHHHhcCCCCCCCcCCc
Q 027523 142 PPWYYSLRANRFGSIASTWLIGNFLQSFLQSSGAFEVYCNDDLVFSKLKEGRFPGEIELKDLVAKQLASSRLVDGVGSV 220 (222)
Q Consensus 142 P~w~~~~~~NK~~~~~~~~~~~n~l~~~l~stGaFEV~vng~LV~SKl~~grfP~~~EL~~~I~~~l~~~~~~~~~~~~ 220 (222)
.++++|+|||++||++||||+ +|+||+.+||+++||++++|+|+||++.++
T Consensus 50 ---------------------------~Pg~gG~FeV~vdg~lVwsRk-~gGFPd~keLkq~VRd~i~p~~~lgh~d~~ 100 (107)
T 3dex_A 50 ---------------------------KPGTGGVFVVRVDDEVVWDRR-EQGFPEPTAVKRLVRDRVAPEKSLGHSERL 100 (107)
T ss_dssp ---------------------------EEESSSCEEEEETTEEEEEHH-HHCSCCHHHHHHHHHHTTC-----------
T ss_pred ---------------------------EeCCCceEEEEECCEEEEEec-CCCCCCHHHHHHHHHHHhCCCCCCCCcccc
Confidence 356899999999999999999 999999999999999999999999988653
No 6
>2ojl_A Hypothetical protein; BPR68, NESG, Q7WAF1, structural genomics, PSI-2, protein STR initiative, northeast structural genomics consortium; 2.10A {Bordetella parapertussis}
Probab=99.87 E-value=4.6e-23 Score=162.39 Aligned_cols=87 Identities=22% Similarity=0.388 Sum_probs=69.6
Q ss_pred ccEEEEEecCCCCchhhHHHHHHHHHHhCCCc--eeecccCCCChHHHHHHhhhhHHHHHHHHHHhhccccccccCCCCh
Q 027523 65 GSTVNINFCASCSYRGTAITMKRMLETQFPGI--DVVLANYPPPLPKRLLAKVVPAVQIGVIGIVVAGEQIFPMLGMTPP 142 (222)
Q Consensus 65 g~tV~i~YC~sCgY~~~f~~lk~~L~~~yP~i--~V~G~nYPpp~~k~~Lak~v~~~q~~~i~~i~~G~~iF~~lG~~~P 142 (222)
.++|+|+||..|+|..+|..|++.|++.||+- +|+
T Consensus 8 ~~~V~I~YC~~C~w~lRa~~laqeLl~tF~~~l~eV~------------------------------------------- 44 (108)
T 2ojl_A 8 PPRIAIQYCTQCQWLLRAAWMAQELLSTFGADLGEVA------------------------------------------- 44 (108)
T ss_dssp CCEEEEEEETTTTCHHHHHHHHHHHHHHHGGGSSEEE-------------------------------------------
T ss_pred CCEEEEEECCCCCChHHHHHHHHHHHHhcCcccceEE-------------------------------------------
Confidence 57899999999999999999999999999863 343
Q ss_pred hhHhhhhcchhhHHHHHHHHHHhhhhccCCCcEEEEEECCeEeEeeeccCCCCChhHHHHHHHHHhcCCCCCCCcCC
Q 027523 143 PWYYSLRANRFGSIASTWLIGNFLQSFLQSSGAFEVYCNDDLVFSKLKEGRFPGEIELKDLVAKQLASSRLVDGVGS 219 (222)
Q Consensus 143 ~w~~~~~~NK~~~~~~~~~~~n~l~~~l~stGaFEV~vng~LV~SKl~~grfP~~~EL~~~I~~~l~~~~~~~~~~~ 219 (222)
..++++|+|||++||++||||+++||||+.+||+++||++++++|+||++.+
T Consensus 45 -------------------------L~P~~~G~FeV~vng~lVwsRk~~ggFPe~keLkq~Vrd~i~p~r~LgH~d~ 96 (108)
T 2ojl_A 45 -------------------------LVPGTGGVFRIHYNGAPLWDREVDGGFPEAKVLKQRVRDHLDPGRPLGHIDG 96 (108)
T ss_dssp -------------------------EEEECTTCEEEEETTEEEEEHHHHCSCCCHHHHHHHHHHHC-----------
T ss_pred -------------------------EEeCCCceEEEEECCEEEEEEccCCCCCCHHHHHHHHHHHhCcCcccCCCCC
Confidence 2256899999999999999999999999999999999999999999998764
No 7
>2ljk_A Protein C17ORF37; MIEN1, oncoprotein, signaling protein; NMR {Homo sapiens}
Probab=99.87 E-value=5.4e-23 Score=163.91 Aligned_cols=89 Identities=29% Similarity=0.622 Sum_probs=79.8
Q ss_pred cCCccEEEEEecCCCCchhhHHHHHHHHHHhCCCceeecccCCCChHHHHHHhhhhHHHHHHHHHHhhccccccccCCCC
Q 027523 62 IGYGSTVNINFCASCSYRGTAITMKRMLETQFPGIDVVLANYPPPLPKRLLAKVVPAVQIGVIGIVVAGEQIFPMLGMTP 141 (222)
Q Consensus 62 ~~~g~tV~i~YC~sCgY~~~f~~lk~~L~~~yP~i~V~G~nYPpp~~k~~Lak~v~~~q~~~i~~i~~G~~iF~~lG~~~ 141 (222)
.+.+.+|+|+||..|+|+.+|..|++.|++.||+..|++
T Consensus 21 ~~~~vrV~IeYC~~C~~~~ra~~laqeLl~tFp~~~V~l----------------------------------------- 59 (117)
T 2ljk_A 21 PGSGVRIVVEYCEPCGFEATYLELASAVKEQYPGIEIES----------------------------------------- 59 (117)
T ss_dssp TTCSCCCEEEECTTTTCHHHHHHHHHHHTTTCSSSCCEE-----------------------------------------
T ss_pred CCCCCeEEEEECCCCCCHHHHHHHHHHHHhhCCcceEEE-----------------------------------------
Confidence 367789999999999999999999999999999987754
Q ss_pred hhhHhhhhcchhhHHHHHHHHHHhhhhccCCCcEEEEEECCeEeEeeeccCCCCChhHHHHHHHHHhcCCCCCCCcCC
Q 027523 142 PPWYYSLRANRFGSIASTWLIGNFLQSFLQSSGAFEVYCNDDLVFSKLKEGRFPGEIELKDLVAKQLASSRLVDGVGS 219 (222)
Q Consensus 142 P~w~~~~~~NK~~~~~~~~~~~n~l~~~l~stGaFEV~vng~LV~SKl~~grfP~~~EL~~~I~~~l~~~~~~~~~~~ 219 (222)
..+++|+|||++||++||||+++||||+.+||+++||++++. +.++++.+
T Consensus 60 ---------------------------~pg~~G~FeV~v~g~li~sk~~~g~FPe~~el~~~Vrd~~~g-~~l~~v~~ 109 (117)
T 2ljk_A 60 ---------------------------RLGGTGAFEIEINGQLVFSKLENGGFPYEKDLIEAIRRASNG-ETLEKITN 109 (117)
T ss_dssp ---------------------------EECSSSCEEEETTSSCCBCHHHHCSCCCTTTTTHHHHHHTTT-SCCCCCCC
T ss_pred ---------------------------ecCCCceEEEEECCEEEEEEccCCCCCCHHHHHHHHHHhhCC-CCchhccc
Confidence 257899999999999999999999999999999999999986 46666553
No 8
>2a4h_A Selenoprotein SEP15; redox, oxidoreductase; NMR {Drosophila melanogaster} SCOP: c.47.1.23
Probab=95.31 E-value=0.022 Score=45.74 Aligned_cols=30 Identities=13% Similarity=0.554 Sum_probs=24.0
Q ss_pred EEEecCCCCchhhHHHHHHHHHH----hCCCceeec
Q 027523 69 NINFCASCSYRGTAITMKRMLET----QFPGIDVVL 100 (222)
Q Consensus 69 ~i~YC~sCgY~~~f~~lk~~L~~----~yP~i~V~G 100 (222)
+++.| .|. .++|-|++.+|++ .||++.|.-
T Consensus 24 ~LEvC-~CK-L~~yPeVk~FI~~d~~~~fpnL~vky 57 (126)
T 2a4h_A 24 ILEVC-TCK-FRAYPQIQAFIQSGRPAKFPNLQIKY 57 (126)
T ss_dssp EEECC-SCT-TTTCTTHHHHHHHTTGGGCTTBCCCC
T ss_pred EEEEc-chh-hhcCHHHHHHHccchhhhCCceEEEE
Confidence 56669 887 6789999999987 499998753
No 9
>4gqo_A LMO0859 protein; virulence, pathogenesis, vaccine candidate, center for struc genomics of infectious diseases, csgid, niaid; HET: MSE PGE; 2.10A {Listeria monocytogenes}
Probab=94.67 E-value=0.04 Score=48.19 Aligned_cols=42 Identities=12% Similarity=0.146 Sum_probs=28.4
Q ss_pred CccEEEEEecCCCC--chhhHHHHHHHHHHhCCCceeecccCCC
Q 027523 64 YGSTVNINFCASCS--YRGTAITMKRMLETQFPGIDVVLANYPP 105 (222)
Q Consensus 64 ~g~tV~i~YC~sCg--Y~~~f~~lk~~L~~~yP~i~V~G~nYPp 105 (222)
.+.+++|.|+..-+ ....++++-+..++++|++.|+-+.+|.
T Consensus 26 ~~gk~~it~W~~~~~~~~~~~~~~i~~F~~~~p~i~V~~~~~~~ 69 (433)
T 4gqo_A 26 DNGKTKVTFWAAPNPTQVKYWDEMAKAYEKENPDVTIEVSQMKE 69 (433)
T ss_dssp ---CEEEEEEECSCHHHHHHHHHHHHHHHHHCTTEEEEEEECCC
T ss_pred CCCCEEEEEEeCCCchHHHHHHHHHHHHHHHCcCeEEEEEEcCC
Confidence 34467787775432 3445677777788999999998777764
No 10
>2heu_A Sugar ABC transporter, sugar-binding protein; periplasmic binding protein, transport protein; 1.04A {Streptococcus pneumoniae} PDB: 2hq0_A 2i58_A* 2hfb_A
Probab=94.18 E-value=0.087 Score=46.02 Aligned_cols=37 Identities=22% Similarity=0.173 Sum_probs=25.2
Q ss_pred cEEEEEecCCCCchhhHHHHHHHHHHhCCCceeecccC
Q 027523 66 STVNINFCASCSYRGTAITMKRMLETQFPGIDVVLANY 103 (222)
Q Consensus 66 ~tV~i~YC~sCgY~~~f~~lk~~L~~~yP~i~V~G~nY 103 (222)
.||++....+ .....++++.+..++++|++.|+-+.+
T Consensus 19 ~tl~~~~~~~-~~~~~~~~~~~~f~~~~p~i~V~~~~~ 55 (401)
T 2heu_A 19 VTIEYFNQKK-EMTKTLEEITRDFEKENPKIKVKVVNV 55 (401)
T ss_dssp EEEEEECCCG-GGHHHHHHHHHHHHHHCTTEEEEEECC
T ss_pred EEEEEEecCC-cHHHHHHHHHHHHHHHCcCeEEEEEeC
Confidence 3555543322 233567888888899999999987666
No 11
>3k01_A Acarbose/maltose binding protein GACH; ABC transporter, acarbose-binding protein, transport protein; 1.35A {Streptomyces glaucescens} PDB: 3jzj_A* 3k00_A* 3k02_A*
Probab=93.44 E-value=0.16 Score=44.30 Aligned_cols=47 Identities=23% Similarity=0.206 Sum_probs=32.9
Q ss_pred cEEEEEecCCCCchhhHHHHHHHHHHhCCCceeecccCCCChHHHHHHhh
Q 027523 66 STVNINFCASCSYRGTAITMKRMLETQFPGIDVVLANYPPPLPKRLLAKV 115 (222)
Q Consensus 66 ~tV~i~YC~sCgY~~~f~~lk~~L~~~yP~i~V~G~nYPpp~~k~~Lak~ 115 (222)
.+|++-...+-.....++++.+..++++|+++|+-+.+| +..+..|+
T Consensus 28 ~~l~~w~~~~~~~~~~~~~~~~~f~~~~pgi~V~~~~~~---~~~~~~kl 74 (412)
T 3k01_A 28 GTVTFWDTSNEAEKATYQALAEGFEKEHPKVDVKYVNVP---FGEANAKF 74 (412)
T ss_dssp EEEEEEECCCTTTHHHHHHHHHTHHHHCTTEEEEEEECC---HHHHHHHH
T ss_pred cEEEEecCCCCcchHHHHHHHHHHHHHCcCeEEEEEecC---hHHHHHHH
Confidence 467776665533567788899999999999999877663 34444444
No 12
>2j23_A Thioredoxin; immune protein, autoreactivity, cross-reactivity, IGE, fungi, epitope, allergen; 1.41A {Malassezia sympodialis}
Probab=93.16 E-value=0.26 Score=36.03 Aligned_cols=30 Identities=13% Similarity=0.231 Sum_probs=22.8
Q ss_pred EEEEEECCeEeEeeeccCCCCChhHHHHHHHHHh
Q 027523 175 AFEVYCNDDLVFSKLKEGRFPGEIELKDLVAKQL 208 (222)
Q Consensus 175 aFEV~vng~LV~SKl~~grfP~~~EL~~~I~~~l 208 (222)
.|-++-||+.+..- .|. +.++|.+.|++.+
T Consensus 91 t~~~~~~G~~~~~~--~G~--~~~~l~~~l~~~l 120 (121)
T 2j23_A 91 TFVFFKNGQKIDTV--VGA--DPSKLQAAITQHS 120 (121)
T ss_dssp EEEEEETTEEEEEE--ESS--CHHHHHHHHHHHT
T ss_pred EEEEEECCeEEeeE--cCC--CHHHHHHHHHHhh
Confidence 57777799988753 343 8899999998875
No 13
>3quf_A Extracellular solute-binding protein, family 1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; HET: MSE; 1.70A {Bifidobacterium longum subsp}
Probab=90.81 E-value=0.52 Score=40.91 Aligned_cols=44 Identities=9% Similarity=0.102 Sum_probs=29.0
Q ss_pred EEEEEecCCCCchhhHHHHHHHHHHhCCCceeecccCCCChHHHHHHhh
Q 027523 67 TVNINFCASCSYRGTAITMKRMLETQFPGIDVVLANYPPPLPKRLLAKV 115 (222)
Q Consensus 67 tV~i~YC~sCgY~~~f~~lk~~L~~~yP~i~V~G~nYPpp~~k~~Lak~ 115 (222)
+|++..+.+ ...++++.+..++++|++.|+-+.++ ++..+..|+
T Consensus 31 ~l~~~~~~~---~~~~~~~~~~f~~~~p~i~V~~~~~~--~~~~~~~kl 74 (414)
T 3quf_A 31 KISFYSYFK---DNQIGEVVKGFEKKNPDITLDVQYGQ--DPAQYISTL 74 (414)
T ss_dssp EEEEEESSC---HHHHHHHHHHHHHHCTTEEEEEEECS--SHHHHHHHH
T ss_pred EEEEEecCC---chHHHHHHHHHHHHCcCeEEEEEeCC--ChHHHHHHH
Confidence 555544432 46788888888999999998876654 334444444
No 14
>3dwv_A Glutathione peroxidase-like protein; alpha beta, 3-layer(ABA) sandwich, glutaredoxin fold, oxidor peroxidase; 1.41A {Trypanosoma brucei} PDB: 2rm5_A 2rm6_A 3e0u_A
Probab=90.75 E-value=1.2 Score=35.06 Aligned_cols=35 Identities=11% Similarity=-0.018 Sum_probs=24.7
Q ss_pred cEEEEEECCeEeEeeeccCCCCChhHHHHHHHHHhcCC
Q 027523 174 GAFEVYCNDDLVFSKLKEGRFPGEIELKDLVAKQLASS 211 (222)
Q Consensus 174 GaFEV~vng~LV~SKl~~grfP~~~EL~~~I~~~l~~~ 211 (222)
..|-|-=||++++... +..+.++|.+.|++.++..
T Consensus 151 ~~~liD~~G~i~~~~~---g~~~~~~l~~~i~~lL~~~ 185 (187)
T 3dwv_A 151 TSFLIDRDGVPVERFS---PGASVKDIEEKLIPLLGSA 185 (187)
T ss_dssp CEEEECTTSCEEEEEC---TTCCHHHHHHHHHHHC---
T ss_pred eEEEECCCCCEEEEEC---CCCCHHHHHHHHHHHHhcC
Confidence 4566666899998744 3467889999999988643
No 15
>3cmi_A Peroxiredoxin HYR1; thioredoxin-like fold, oxidoreductase, peroxidase, redox-ACT center; 2.02A {Saccharomyces cerevisiae}
Probab=88.22 E-value=2 Score=32.85 Aligned_cols=35 Identities=11% Similarity=0.049 Sum_probs=25.5
Q ss_pred cEEEEEECCeEeEeeeccCCCCChhHHHHHHHHHhcCC
Q 027523 174 GAFEVYCNDDLVFSKLKEGRFPGEIELKDLVAKQLASS 211 (222)
Q Consensus 174 GaFEV~vng~LV~SKl~~grfP~~~EL~~~I~~~l~~~ 211 (222)
..|-|.=||++++... | ..+.+++.+.|++.+..+
T Consensus 136 ~~~lid~~G~i~~~~~--g-~~~~~~l~~~i~~ll~~~ 170 (171)
T 3cmi_A 136 EKFLVDKKGKVYERYS--S-LTKPSSLSETIEELLKEV 170 (171)
T ss_dssp CEEEECSSSCEEEEEC--T-TSCGGGGHHHHHHHHTCC
T ss_pred eEEEECCCCCEEEEeC--C-CCCHHHHHHHHHHHHHhc
Confidence 4666666899988643 2 457889999999887643
No 16
>2joi_A Hypothetical protein TA0095; structural genomics, COG4004 orthologous group, structural genomics consortium, SGC, unknown function; NMR {Thermoplasma acidophilum}
Probab=88.00 E-value=2.1 Score=33.94 Aligned_cols=40 Identities=5% Similarity=0.019 Sum_probs=27.6
Q ss_pred ccCCccEEEEEecCCCCchhhHHHHHHHHHHhCCCceeecc
Q 027523 61 GIGYGSTVNINFCASCSYRGTAITMKRMLETQFPGIDVVLA 101 (222)
Q Consensus 61 ~~~~g~tV~i~YC~sCgY~~~f~~lk~~L~~~yP~i~V~G~ 101 (222)
....|..++ +|=..-||++..+.+.+.|++.||.+..+|.
T Consensus 16 ~~~~~~~Mq-eY~~KRG~k~~lerI~~~l~e~Fg~~~~~g~ 55 (118)
T 2joi_A 16 NLYFQGHMR-EYPVKKGFPTDYDSIKRKISELGFDVKSEGD 55 (118)
T ss_dssp -------CE-EECCCSSSCCSHHHHHHHHHHHTCEEEEETT
T ss_pred hhhhhhhhh-ccccccCCCCcHHHHHHHHHHHcCCceecCC
Confidence 334454443 5777889999999999999999999766664
No 17
>4g68_A ABC transporter; transport protein; HET: XYS; 1.80A {Caldanaerobius} PDB: 4g68_B*
Probab=86.83 E-value=0.54 Score=41.85 Aligned_cols=48 Identities=8% Similarity=0.154 Sum_probs=28.1
Q ss_pred ccEEEEEecCCC--C-chhhHHHHHHHHHHhCCCceeecccCCCChHHHHHHhh
Q 027523 65 GSTVNINFCASC--S-YRGTAITMKRMLETQFPGIDVVLANYPPPLPKRLLAKV 115 (222)
Q Consensus 65 g~tV~i~YC~sC--g-Y~~~f~~lk~~L~~~yP~i~V~G~nYPpp~~k~~Lak~ 115 (222)
+.+|+|.|+..- . .+..++++-+..++++|++.|+-+..| +..+..|+
T Consensus 60 ~~~vtit~w~~~~~~~~~~~~~~~i~~F~~~~p~I~V~~~~~~---~~~~~~kl 110 (456)
T 4g68_A 60 SKKITLTFWNLFTGEPAKTKVKEIIDQWNKENPNVQIVESVTE---NDAYKTKI 110 (456)
T ss_dssp ---CEEEEEECCCSTTHHHHHHHHHHHHHHHCTTSEEEEEECC---HHHHHHHH
T ss_pred CCCEEEEEeeCCCCchHHHHHHHHHHHHHHHCcCeEEEEEECC---cHHHHHHH
Confidence 345666665321 2 344567777778899999999765443 44444443
No 18
>4hw8_A Bacterial extracellular solute-binding protein, P; structural genomics, niaid, national institute of allergy AN infectious diseases; HET: MAL; 2.25A {Staphylococcus aureus subsp} PDB: 4hs7_A*
Probab=85.83 E-value=0.96 Score=39.49 Aligned_cols=40 Identities=13% Similarity=0.025 Sum_probs=27.1
Q ss_pred EEEEEecCCCCchhhHHHHHHHHHHhCCCceeecccCCCChH
Q 027523 67 TVNINFCASCSYRGTAITMKRMLETQFPGIDVVLANYPPPLP 108 (222)
Q Consensus 67 tV~i~YC~sCgY~~~f~~lk~~L~~~yP~i~V~G~nYPpp~~ 108 (222)
||++-. .+-.....++++.+..++++ ++.|+-+.+|-.-+
T Consensus 42 tl~~w~-~~~~~~~~~~~~~~~f~~~~-gi~V~~~~~~~~~~ 81 (420)
T 4hw8_A 42 QLTMWV-DGDKQMAFYKKITDQYTKKT-GIKVKLVNIGQNDQ 81 (420)
T ss_dssp EEEEEE-SSHHHHHHHHHHHHHHHHHH-CCEEEEEECCTTTH
T ss_pred EEEEec-CCCcchHHHHHHHHHHHHHh-CCEEEEEecCchhH
Confidence 455533 33335667788888888899 99988877764433
No 19
>3k6v_A Solute-binding protein MA_0280; MODA, molybdate, periplasmic BIN protein, ABC transporter, transport protein, ligand, metal- protein; HET: CIT; 1.69A {Methanosarcina acetivorans} PDB: 3k6u_A* 3k6w_A 3k6x_A
Probab=85.64 E-value=0.69 Score=41.74 Aligned_cols=33 Identities=21% Similarity=0.294 Sum_probs=26.2
Q ss_pred cEEEEEecCCCCchhhHHHHHHHHHHhCCCceeec
Q 027523 66 STVNINFCASCSYRGTAITMKRMLETQFPGIDVVL 100 (222)
Q Consensus 66 ~tV~i~YC~sCgY~~~f~~lk~~L~~~yP~i~V~G 100 (222)
.+|+|.... +++..++++.+..++++|+++|+-
T Consensus 43 ~~L~V~~a~--sl~~~~~~l~~~Fe~~~pgv~V~~ 75 (354)
T 3k6v_A 43 EVLTVFHAG--SLSVPFEELEAEFEAQHPGVDVQR 75 (354)
T ss_dssp CEEEEEEEG--GGHHHHHHHHHHHHHHSTTCEEEE
T ss_pred CcEEEEEec--chHHHHHHHHHHHHHHCCCcEEEE
Confidence 367765444 588999999999999999998753
No 20
>2oe3_A Thioredoxin-3; electron transport, alpha/beta sandwich, oxidized, dimer; 1.80A {Saccharomyces cerevisiae} PDB: 2oe1_A 2oe0_A
Probab=85.34 E-value=1.9 Score=31.15 Aligned_cols=28 Identities=14% Similarity=0.156 Sum_probs=18.8
Q ss_pred EEEEEECCeEeEeeeccCCCCChhHHHHHHHH
Q 027523 175 AFEVYCNDDLVFSKLKEGRFPGEIELKDLVAK 206 (222)
Q Consensus 175 aFEV~vng~LV~SKl~~grfP~~~EL~~~I~~ 206 (222)
.|-++-||+.+.. .. |.. .++|.+.|++
T Consensus 86 t~~~~~~G~~~~~-~~-G~~--~~~l~~~l~~ 113 (114)
T 2oe3_A 86 TFVLGKDGQLIGK-II-GAN--PTALEKGIKD 113 (114)
T ss_dssp EEEEEETTEEEEE-EE-SSC--HHHHHHHHHT
T ss_pred EEEEEeCCeEEEE-Ee-CCC--HHHHHHHHHh
Confidence 4667779998863 33 332 7888887764
No 21
>1ub1_A MECP2, attachment region binding protein; chicken methyl-CPG-binding protein 2 (cmecp2), MAR-binding protein (ARBP), spectroscopy; NMR {Gallus gallus} SCOP: d.10.1.3
Probab=84.94 E-value=1.5 Score=35.40 Aligned_cols=38 Identities=3% Similarity=0.084 Sum_probs=27.8
Q ss_pred ccEEEEEecCCCCch-hhHHHHHHHHHHhCCCceeecccC
Q 027523 65 GSTVNINFCASCSYR-GTAITMKRMLETQFPGIDVVLANY 103 (222)
Q Consensus 65 g~tV~i~YC~sCgY~-~~f~~lk~~L~~~yP~i~V~G~nY 103 (222)
..+..+-|+..||=+ ....|+.++|++. |+..+..++|
T Consensus 55 agk~DVYY~SP~GKkfRSk~Ev~ryL~~~-~~~~~~~e~F 93 (133)
T 1ub1_A 55 AGKYDVYLINPQGKAFRSKVELIAYFEKV-GDTSLDPNDF 93 (133)
T ss_dssp CCSEEEEEECTTSCEESSHHHHHHHHTTS-CCCSCCGGGC
T ss_pred CCceeEEEECCCCCeeeCHHHHHHHHHHC-CccCCCHhHC
Confidence 357899999999955 6789999999864 5533444444
No 22
>2o8v_B Thioredoxin 1; disulfide crosslinked complex, oxidoreductase; 3.00A {Escherichia coli}
Probab=84.91 E-value=9.6 Score=27.97 Aligned_cols=31 Identities=13% Similarity=0.203 Sum_probs=22.7
Q ss_pred EEEEEECCeEeEeeeccCCCCChhHHHHHHHHHh
Q 027523 175 AFEVYCNDDLVFSKLKEGRFPGEIELKDLVAKQL 208 (222)
Q Consensus 175 aFEV~vng~LV~SKl~~grfP~~~EL~~~I~~~l 208 (222)
.+-++-||+.++. .. +..+.++|.+.|++.+
T Consensus 97 t~~~~~~G~~~~~-~~--G~~~~~~l~~~l~~~l 127 (128)
T 2o8v_B 97 TLLLFKNGEVAAT-KV--GALSKGQLKEFLDANL 127 (128)
T ss_dssp EEEEEETTEEEEE-EE--SCCCHHHHHHHHHHHH
T ss_pred EEEEEeCCEEEEE-Ec--CCCCHHHHHHHHHHhh
Confidence 4666679998863 22 3558899999998876
No 23
>2vgq_A Maltose-binding periplasmic protein, mitochondrial antiviral-signaling protein; immune system/transport, IPS1/MAVS/VISA/cardif; HET: MTT; 2.1A {Escherichia coli}
Probab=83.49 E-value=0.67 Score=41.99 Aligned_cols=39 Identities=13% Similarity=0.029 Sum_probs=22.3
Q ss_pred CccEEEEEecCCCCchhhHHHHHHHHHHhCCCceeecccCC
Q 027523 64 YGSTVNINFCASCSYRGTAITMKRMLETQFPGIDVVLANYP 104 (222)
Q Consensus 64 ~g~tV~i~YC~sCgY~~~f~~lk~~L~~~yP~i~V~G~nYP 104 (222)
...||++-.. +=.....++++.+..+ ++|++.|+-+.+|
T Consensus 18 ~~~tlt~w~~-~~~~~~~~~~~i~~F~-~~pgi~V~~~~~~ 56 (477)
T 2vgq_A 18 EEGKLVIWIN-GDKGYNGLAEVGKKFE-KDTGIKVTVEHPD 56 (477)
T ss_dssp CTTSEEEECC-TTSCHHHHHHHHHHHH-HHHSCCEEEECCT
T ss_pred CCcEEEEEeC-CCcchHHHHHHHHHHH-hCcCCeEEEEecC
Confidence 3445655432 1123355666666666 7789888766554
No 24
>2qry_A Thiamine-binding periplasmic protein; thiamin binding protein, ABC transporter, transport protein; HET: TPS; 2.25A {Escherichia coli}
Probab=81.68 E-value=1.4 Score=37.20 Aligned_cols=47 Identities=13% Similarity=0.203 Sum_probs=28.8
Q ss_pred CccEEEEEecCCCCchhh---HHHHHHHHHHhCCCceeecccCCCChHHHHHHhh
Q 027523 64 YGSTVNINFCASCSYRGT---AITMKRMLETQFPGIDVVLANYPPPLPKRLLAKV 115 (222)
Q Consensus 64 ~g~tV~i~YC~sCgY~~~---f~~lk~~L~~~yP~i~V~G~nYPpp~~k~~Lak~ 115 (222)
.+.+|+|-.+. ++... ++++.+..++++ ++.|+-+.++ ....+..|+
T Consensus 21 ~~~~L~v~~~~--~~~~~~~~~~~~~~~Fe~~~-gi~V~~~~~~--~~~~~~~kl 70 (330)
T 2qry_A 21 MKPVLTVYTYD--SFAADWGPGPVVKKAFEADC-NCELKLVALE--DGVSLLNRL 70 (330)
T ss_dssp -CCEEEEEECH--HHHSTTSSHHHHHHHHHTTS-CSEEEEEECS--CHHHHHHHH
T ss_pred CCCeEEEEecc--ccccchhhhHHHHHHHHHHH-CCEEEEEeCC--CHHHHHHHH
Confidence 34577775443 34333 578888888888 9998876553 134555554
No 25
>3bci_A Disulfide bond protein A; thiol-disulfide oxidoreductase, redox protein, protein folding, redox active centre; 1.81A {Staphylococcus aureus} PDB: 3bd2_A 3bck_A
Probab=81.25 E-value=17 Score=28.15 Aligned_cols=43 Identities=12% Similarity=0.021 Sum_probs=32.9
Q ss_pred CccEEEEEecCCCCchhhHHHH-HHHHHHhCC---CceeecccCCCC
Q 027523 64 YGSTVNINFCASCSYRGTAITM-KRMLETQFP---GIDVVLANYPPP 106 (222)
Q Consensus 64 ~g~tV~i~YC~sCgY~~~f~~l-k~~L~~~yP---~i~V~G~nYPpp 106 (222)
.-.+|.+.+=..|.|=..|... .+.|.++|+ +++++--.+|..
T Consensus 11 a~~~i~~f~D~~Cp~C~~~~~~l~~~l~~~~~~~~~v~~~~~~~p~~ 57 (186)
T 3bci_A 11 GKPLVVVYGDYKCPYCKELDEKVMPKLRKNYIDNHKVEYQFVNLAFL 57 (186)
T ss_dssp CCCEEEEEECTTCHHHHHHHHHHHHHHHHHTTTTTSSEEEEEECCCS
T ss_pred CCeEEEEEECCCChhHHHHHHHHHHHHHHHhccCCeEEEEEEecCcC
Confidence 3458888888999988888764 578889997 577777777754
No 26
>2c0g_A ERP29 homolog, windbeutel protein; PDI-dbeta, PDI, protein disulfide isomerase, PIPE, dorsal-ventral patterning, chaperone, WIND mutants; 1.75A {Drosophila melanogaster} SCOP: a.71.1.1 c.47.1.7 PDB: 1ovn_A 2c0f_A 2c1y_A 2c0e_A
Probab=81.06 E-value=0.97 Score=38.91 Aligned_cols=32 Identities=3% Similarity=-0.184 Sum_probs=22.5
Q ss_pred cEEEEEe--cCCCCchhhHHHHHHHHHHhCCCce
Q 027523 66 STVNINF--CASCSYRGTAITMKRMLETQFPGID 97 (222)
Q Consensus 66 ~tV~i~Y--C~sCgY~~~f~~lk~~L~~~yP~i~ 97 (222)
..+--.| ..-||+.+.|+++++.+...-+++.
T Consensus 35 ~vlV~Fy~~ApWCgl~P~~e~lA~~~~~~~~~v~ 68 (248)
T 2c0g_A 35 YSVVKFDIASPYGEKHEAFTAFSKSAHKATKDLL 68 (248)
T ss_dssp EEEEEEEESSCCSHHHHHHHHHHHHHHHHCSSEE
T ss_pred CEEEEEECCCCCCccHHHHHHHHHHHhccCCCeE
Confidence 3444445 5889999999999988766346653
No 27
>3u5r_E Uncharacterized protein; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc, hypothetical protein; 2.05A {Sinorhizobium meliloti}
Probab=79.58 E-value=3.2 Score=33.60 Aligned_cols=36 Identities=19% Similarity=0.179 Sum_probs=24.3
Q ss_pred EEEEECCeEeEeeec------cCCCCChhHHHHHHHHHhcCC
Q 027523 176 FEVYCNDDLVFSKLK------EGRFPGEIELKDLVAKQLASS 211 (222)
Q Consensus 176 FEV~vng~LV~SKl~------~grfP~~~EL~~~I~~~l~~~ 211 (222)
|-|-=||+++|.-.. ....++.++|.+.|++.+...
T Consensus 148 ~liD~~G~i~~~g~~d~~~~~~~~~~~~~~l~~~i~~ll~~~ 189 (218)
T 3u5r_E 148 FLYDRERRLVYHGQFDDARPGNGKDVTGADLRAAVDAVLKGK 189 (218)
T ss_dssp EEECTTCBEEEEECSSSCCTTSCCCCCCHHHHHHHHHHHTTC
T ss_pred EEECCCCcEEEeccccccccccccccCHHHHHHHHHHHHcCC
Confidence 434347899986432 223457899999999988643
No 28
>2yjp_A Putative ABC transporter, periplasmic binding Pro amino acid; transport protein, solute-binding protein; 2.26A {Neisseria gonorrhoeae}
Probab=79.29 E-value=1.1 Score=37.16 Aligned_cols=26 Identities=12% Similarity=0.144 Sum_probs=17.7
Q ss_pred hhhHHHHHHHHHHhC--CCceeecccCC
Q 027523 79 RGTAITMKRMLETQF--PGIDVVLANYP 104 (222)
Q Consensus 79 ~~~f~~lk~~L~~~y--P~i~V~G~nYP 104 (222)
.+-+.++.+.+.++. |+++++-..++
T Consensus 78 ~G~~~dl~~~i~~~~~~~g~~v~~~~~~ 105 (291)
T 2yjp_A 78 QGFDVEIAKDLAKDLLGSPDKVEFVLTE 105 (291)
T ss_dssp ESHHHHHHHHHHHHHHSCGGGEEEEECC
T ss_pred eehHHHHHHHHHHHhccCCceEEEEEcc
Confidence 456667777777666 78877666554
No 29
>2f9f_A First mannosyl transferase (WBAZ-1); alpha-beta protein, structural genomics, PSI, protein struct initiative; 1.80A {Archaeoglobus fulgidus} SCOP: c.87.1.8
Probab=77.84 E-value=8 Score=29.57 Aligned_cols=44 Identities=5% Similarity=-0.236 Sum_probs=28.7
Q ss_pred EEEecCCCCchhhHHHHHHHHHHhCCCce--eecccCCCChHHHHHH
Q 027523 69 NINFCASCSYRGTAITMKRMLETQFPGID--VVLANYPPPLPKRLLA 113 (222)
Q Consensus 69 ~i~YC~sCgY~~~f~~lk~~L~~~yP~i~--V~G~nYPpp~~k~~La 113 (222)
.|.|+..-...+..+.+-+.++.- |+++ +.|..-.....++.+.
T Consensus 25 ~i~~~G~~~~~Kg~~~li~a~~~l-~~~~l~i~G~~~~~~~l~~~~~ 70 (177)
T 2f9f_A 25 FWLSVNRIYPEKRIELQLEVFKKL-QDEKLYIVGWFSKGDHAERYAR 70 (177)
T ss_dssp CEEEECCSSGGGTHHHHHHHHHHC-TTSCEEEEBCCCTTSTHHHHHH
T ss_pred EEEEEeccccccCHHHHHHHHHhC-CCcEEEEEecCccHHHHHHHHH
Confidence 466777777888888888887765 7764 5665433344444444
No 30
>3kij_A Probable glutathione peroxidase 8; human PDI-peroxidase, membrane, oxidoreductase, transmembrane; 1.80A {Homo sapiens} SCOP: c.47.1.0 PDB: 3cyn_A
Probab=76.77 E-value=23 Score=27.14 Aligned_cols=31 Identities=10% Similarity=-0.123 Sum_probs=18.8
Q ss_pred EEEEEECCeEeEeeeccCCCCChhHHHHHHHHHh
Q 027523 175 AFEVYCNDDLVFSKLKEGRFPGEIELKDLVAKQL 208 (222)
Q Consensus 175 aFEV~vng~LV~SKl~~grfP~~~EL~~~I~~~l 208 (222)
.|-|.=||++++.... ..+.+++.+.|++.+
T Consensus 139 ~~lid~~G~i~~~~~g---~~~~~~l~~~i~~lL 169 (180)
T 3kij_A 139 KYLVNPEGQVVKFWRP---EEPIEVIRPDIAALV 169 (180)
T ss_dssp EEEECTTSCEEEEECT---TCCGGGTHHHHHHHH
T ss_pred EEEECCCCCEEEEECC---CCCHHHHHHHHHHHH
Confidence 5767668999987432 234555555555544
No 31
>3hz8_A Thiol:disulfide interchange protein DSBA; thiol-oxidoreductase, disulfide bond; 1.45A {Neisseria meningitidis MC58} PDB: 3dvw_A 3a3t_A
Probab=76.34 E-value=17 Score=28.78 Aligned_cols=136 Identities=13% Similarity=0.016 Sum_probs=71.6
Q ss_pred cEEEEEecCCCCchhhHHHHHHHHHHhCCCceeecccCCCChHH--HHHHhhhhHHHH-----------HHHHHHhh-cc
Q 027523 66 STVNINFCASCSYRGTAITMKRMLETQFPGIDVVLANYPPPLPK--RLLAKVVPAVQI-----------GVIGIVVA-GE 131 (222)
Q Consensus 66 ~tV~i~YC~sCgY~~~f~~lk~~L~~~yP~i~V~G~nYPpp~~k--~~Lak~v~~~q~-----------~~i~~i~~-G~ 131 (222)
.+|...+-..|+|=+.+...-+.+.++||+ +|+-..+|..... ...|++.-.++- .+.-.++. |.
T Consensus 26 v~vv~f~d~~Cp~C~~~~~~l~~~~~~~~~-~v~~~~~p~~~~~~~~~aa~a~~aa~~~g~~~~~~~~~~lf~a~~~~~~ 104 (193)
T 3hz8_A 26 VEVLEFFGYFCPHCAHLEPVLSKHAKSFKD-DMYLRTEHVVWQKEMLTLARLAAAVDMAAADSKDVANSHIFDAMVNQKI 104 (193)
T ss_dssp EEEEEEECTTCHHHHHHHHHHHHHHTTCCT-TEEEEEEECCCSGGGHHHHHHHHHHHHHTGGGHHHHHHHHHHHHHTSCC
T ss_pred cEEEEEECCCChhHHHHHHHHHHHHHHCCC-CeEEEEecCCCCcccHHHHHHHHHHHHcCchhHHhHHHHHHHHHHHhCc
Confidence 477777888899988998888888999998 4554556654221 234444333221 11111111 22
Q ss_pred cc---------cccc-CCCChhhHhhhhcchhhHHHHHHHHHHhhhhccCCCcEEEEEECCeEeEeeeccCCCCChhHHH
Q 027523 132 QI---------FPML-GMTPPPWYYSLRANRFGSIASTWLIGNFLQSFLQSSGAFEVYCNDDLVFSKLKEGRFPGEIELK 201 (222)
Q Consensus 132 ~i---------F~~l-G~~~P~w~~~~~~NK~~~~~~~~~~~n~l~~~l~stGaFEV~vng~LV~SKl~~grfP~~~EL~ 201 (222)
++ ...+ |+....+...+........+... .-.....+-+|.=-+.+||+.+++ +. +.+++.
T Consensus 105 ~~~~~~~l~~~a~~~~Gld~~~~~~~~~s~~~~~~v~~~---~~~a~~~gv~gtPt~vvng~~~~~----~~--~~e~l~ 175 (193)
T 3hz8_A 105 KLQNPEVLKKWLGEQTAFDGKKVLAAYESPESQARADKM---QELTETFQIDGVPTVIVGGKYKVE----FA--DWESGM 175 (193)
T ss_dssp CTTSHHHHHHHHHHCTTTTHHHHHHHHHSHHHHHHHHHH---HHHHHHTTCCSSSEEEETTTEEEC----CS--SHHHHH
T ss_pred CCCCHHHHHHHHHHccCCCHHHHHHHHcCHHHHHHHHHH---HHHHHHhCCCcCCEEEECCEEEec----CC--CHHHHH
Confidence 21 2223 55443333333333322221111 111122333444444559999886 33 788999
Q ss_pred HHHHHHhcCC
Q 027523 202 DLVAKQLASS 211 (222)
Q Consensus 202 ~~I~~~l~~~ 211 (222)
+.|+..+...
T Consensus 176 ~~i~~ll~k~ 185 (193)
T 3hz8_A 176 NTIDLLADKV 185 (193)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 9998877543
No 32
>4g1u_A Hemin transport system permease protein HMUU; membrane transporter, type II ABC importer, HMUT, plasma MEM transport protein-hydrolase complex; 3.01A {Yersinia pestis}
Probab=75.56 E-value=0.57 Score=42.86 Aligned_cols=8 Identities=13% Similarity=0.003 Sum_probs=0.0
Q ss_pred CCCCCCCC
Q 027523 47 ENLTPDFP 54 (222)
Q Consensus 47 ~~~~~~~~ 54 (222)
.-+++||-
T Consensus 14 ~~~~~~~~ 21 (357)
T 4g1u_A 14 SGENLYFQ 21 (357)
T ss_dssp --------
T ss_pred CCCchHHH
Confidence 34566654
No 33
>3onm_A Transcriptional regulator LRHA; LYSR, ROVM, transcription factor, virulence factor; 2.40A {Yersinia pseudotuberculosis}
Probab=75.56 E-value=1.4 Score=34.61 Aligned_cols=37 Identities=8% Similarity=0.117 Sum_probs=21.5
Q ss_pred CCccEEEEEecCCCCchhhHHHHHHHHHHhCCCceeec
Q 027523 63 GYGSTVNINFCASCSYRGTAITMKRMLETQFPGIDVVL 100 (222)
Q Consensus 63 ~~g~tV~i~YC~sCgY~~~f~~lk~~L~~~yP~i~V~G 100 (222)
+...+|+|-...+.. ......+-..+.++||+++++-
T Consensus 24 ~~~g~l~Ig~~~~~~-~~~l~~~l~~f~~~~P~i~l~i 60 (238)
T 3onm_A 24 NMEGSLIIGASDDTA-DTLLPFLLNRVATLYPRLAIDV 60 (238)
T ss_dssp ---CCEEEEECHHHH-TTHHHHHHHHHHHHCTTCCEEE
T ss_pred CCceeEEEeccchhh-HHHHHHHHHHHHHHCCCcEEEE
Confidence 444577775444332 2345566667788999987653
No 34
>2xd3_A MALX, maltose/maltodextrin-binding protein; solute-binding protein, sugar binding protein, virulence, alpha-glucan, sugar transport; HET: GLC; 2.00A {Streptococcus pneumoniae} PDB: 2xd2_A*
Probab=75.13 E-value=2.1 Score=37.30 Aligned_cols=46 Identities=15% Similarity=0.185 Sum_probs=28.4
Q ss_pred EEEEEecCCCCchhhHHHHHHHHHHhCCCceeecccCCCChHHHHHHhhh
Q 027523 67 TVNINFCASCSYRGTAITMKRMLETQFPGIDVVLANYPPPLPKRLLAKVV 116 (222)
Q Consensus 67 tV~i~YC~sCgY~~~f~~lk~~L~~~yP~i~V~G~nYPpp~~k~~Lak~v 116 (222)
+++|.++..-+....++++.+..++++ ++.|+-+.+| +..+..|+.
T Consensus 34 ~~~l~~w~~~~~~~~~~~~~~~F~~~~-~i~V~~~~~~---~~~~~~kl~ 79 (416)
T 2xd3_A 34 VKELTVYVDEGYKSYIEEVAKAYEKEA-GVKVTLKTGD---ALGGLDKLS 79 (416)
T ss_dssp --CCEEEECGGGHHHHHHHHHHHHHHS-SCCCEEEECC---HHHHHHTHH
T ss_pred ceEEEEEeCCCchHHHHHHHHHHHHHH-CCEEEEEeCC---hHHHHHHHH
Confidence 344444444356667788888889999 9988766553 344444543
No 35
>1xfl_A Thioredoxin H1; AT3G51030, structural genomics, protein structure initiative, CESG, center for eukaryotic structural genomics; NMR {Arabidopsis thaliana} SCOP: c.47.1.1
Probab=74.81 E-value=13 Score=27.04 Aligned_cols=30 Identities=23% Similarity=0.334 Sum_probs=22.5
Q ss_pred EEEEEECCeEeEeeeccCCCCChhHHHHHHHHHh
Q 027523 175 AFEVYCNDDLVFSKLKEGRFPGEIELKDLVAKQL 208 (222)
Q Consensus 175 aFEV~vng~LV~SKl~~grfP~~~EL~~~I~~~l 208 (222)
.|-++-||+.++. . .| .+.++|.+.|++.+
T Consensus 94 t~~~~~~G~~~~~-~-~G--~~~~~l~~~l~~~l 123 (124)
T 1xfl_A 94 TFMFLKEGKILDK-V-VG--AKKDELQSTIAKHL 123 (124)
T ss_dssp EEEEEETTEEEEE-E-ES--CCHHHHHHHHHHHC
T ss_pred EEEEEECCEEEEE-E-eC--CCHHHHHHHHHHhc
Confidence 4777789998874 3 34 28899999998765
No 36
>1r26_A Thioredoxin; redox-active disulfide, electron transport; 1.40A {Trypanosoma} SCOP: c.47.1.1
Probab=73.62 E-value=8.8 Score=28.19 Aligned_cols=31 Identities=10% Similarity=0.125 Sum_probs=23.3
Q ss_pred EEEEEECCeEeEeeeccCCCCChhHHHHHHHHHhc
Q 027523 175 AFEVYCNDDLVFSKLKEGRFPGEIELKDLVAKQLA 209 (222)
Q Consensus 175 aFEV~vng~LV~SKl~~grfP~~~EL~~~I~~~l~ 209 (222)
.|-++-||+.+.. . .| .+.++|.+.|++.+.
T Consensus 93 t~~i~~~G~~~~~-~-~G--~~~~~l~~~l~~~l~ 123 (125)
T 1r26_A 93 TFIIARSGKMLGH-V-IG--ANPGMLRQKLRDIIK 123 (125)
T ss_dssp EEEEEETTEEEEE-E-ES--SCHHHHHHHHHHHHH
T ss_pred EEEEEeCCeEEEE-E-eC--CCHHHHHHHHHHHhc
Confidence 4777789998863 3 34 378999999998874
No 37
>3uau_A JLPA, surface-exposed lipoprotein; adhesin, bacterial cell surface, cell adhesion; 2.70A {Campylobacter jejuni subsp}
Probab=72.85 E-value=2.9 Score=38.00 Aligned_cols=19 Identities=21% Similarity=0.525 Sum_probs=12.1
Q ss_pred HHHHHH--HhCCCceeecccC
Q 027523 85 MKRMLE--TQFPGIDVVLANY 103 (222)
Q Consensus 85 lk~~L~--~~yP~i~V~G~nY 103 (222)
+++.|+ +++|+++|+-.|+
T Consensus 45 i~~~i~~~sqd~gikIefsnF 65 (379)
T 3uau_A 45 VKQEIASLSQDSGIKIEFSDF 65 (379)
T ss_dssp HHHHHHHHHTTTSCEEECCCC
T ss_pred HHHHHHHhhhCCCceEEeecc
Confidence 344443 4589999886655
No 38
>1tvm_A PTS system, galactitol-specific IIB component; phosphotransferase system (PTS), P-loop; NMR {Escherichia coli}
Probab=72.01 E-value=6.7 Score=29.50 Aligned_cols=28 Identities=4% Similarity=0.020 Sum_probs=15.7
Q ss_pred EEEEEecCCCCchhhHHHHHHHHHHhCCC
Q 027523 67 TVNINFCASCSYRGTAITMKRMLETQFPG 95 (222)
Q Consensus 67 tV~i~YC~sCgY~~~f~~lk~~L~~~yP~ 95 (222)
..+|..|.+.|+..... +++.|++.+++
T Consensus 21 ~kkIlvvC~sG~gTS~l-l~~kl~~~~~~ 48 (113)
T 1tvm_A 21 KRKIIVACGGAVATSTM-AAEEIKELCQS 48 (113)
T ss_dssp SEEEEEESCSCSSHHHH-HHHHHHHHHHH
T ss_pred ccEEEEECCCCHHHHHH-HHHHHHHHHHH
Confidence 35777777778765442 23344444443
No 39
>1svj_A Potassium-transporting ATPase B chain; alpha-beta sandwich, hydrolase; NMR {Escherichia coli} SCOP: d.220.1.1 PDB: 1u7q_A 2a00_A* 2a29_A*
Probab=71.14 E-value=2 Score=34.51 Aligned_cols=31 Identities=16% Similarity=0.070 Sum_probs=10.6
Q ss_pred ccccCCccEEEEEe-cCCCCc-hhhHHHHHHHHH
Q 027523 59 VGGIGYGSTVNINF-CASCSY-RGTAITMKRMLE 90 (222)
Q Consensus 59 ~~~~~~g~tV~i~Y-C~sCgY-~~~f~~lk~~L~ 90 (222)
.|+|..|+..-..+ .. .|+ .....++...+|
T Consensus 14 ~~tit~gnr~vt~v~~~-~g~~e~elL~lAAs~E 46 (156)
T 1svj_A 14 SGHGGRHNRQASEFIPA-QGVDEKTLADAAQLAS 46 (156)
T ss_dssp -------CEEEEEEEEC-TTSCHHHHHHHHHHTT
T ss_pred CCceecCCCeEEEEEec-CCCCHHHHHHHHHHHh
Confidence 38888997433332 32 243 344555555554
No 40
>3ha9_A Uncharacterized thioredoxin-like protein; PSI, MCSG, structural G midwest center for structural genomics, protein structure initiative; 1.70A {Aeropyrum pernix}
Probab=69.01 E-value=32 Score=25.42 Aligned_cols=39 Identities=13% Similarity=0.132 Sum_probs=26.0
Q ss_pred cEEEEEecCCCCchhhHHHHHHHHHHhCCCceeecccCC
Q 027523 66 STVNINFCASCSYRGTAITMKRMLETQFPGIDVVLANYP 104 (222)
Q Consensus 66 ~tV~i~YC~sCgY~~~f~~lk~~L~~~yP~i~V~G~nYP 104 (222)
.+|-..+...|++=......-+.+.++|+++.|.+-+..
T Consensus 39 ~~lv~F~~~~C~~C~~~~~~l~~l~~~~~~v~vv~i~~d 77 (165)
T 3ha9_A 39 VVILWFMAAWCPSCVYMADLLDRLTEKYREISVIAIDFW 77 (165)
T ss_dssp EEEEEEECTTCTTHHHHHHHHHHHHHHCTTEEEEEEECC
T ss_pred EEEEEEECCCCcchhhhHHHHHHHHHHcCCcEEEEEEec
Confidence 455556667787766666555667788998877665443
No 41
>3oti_A CALG3; calicheamicin, TDP, structural genomics, PSI-2, protein STRU initiative, center for eukaryotic structural genomics, CESG fold; HET: TYD C0T; 1.60A {Micromonospora echinospora} PDB: 3d0q_A* 3d0r_A*
Probab=68.15 E-value=2.4 Score=36.65 Aligned_cols=25 Identities=16% Similarity=0.068 Sum_probs=12.4
Q ss_pred EEEEecCCCC--chhhHHHHHHHHHHh
Q 027523 68 VNINFCASCS--YRGTAITMKRMLETQ 92 (222)
Q Consensus 68 V~i~YC~sCg--Y~~~f~~lk~~L~~~ 92 (222)
++|.+++.-+ --..+..+.+.|+++
T Consensus 21 MrIl~~~~~~~Ghv~~~~~La~~L~~~ 47 (398)
T 3oti_A 21 MRVLFVSSPGIGHLFPLIQLAWGFRTA 47 (398)
T ss_dssp CEEEEECCSSHHHHGGGHHHHHHHHHT
T ss_pred CEEEEEcCCCcchHhHHHHHHHHHHHC
Confidence 5665554321 222345666666664
No 42
>3ed3_A Protein disulfide-isomerase MPD1; thioredoxin-like domain, CXXC, endoplasmic reticulum, glycoprotein, redox-active center; 2.00A {Saccharomyces cerevisiae}
Probab=67.95 E-value=24 Score=30.21 Aligned_cols=16 Identities=13% Similarity=0.117 Sum_probs=12.6
Q ss_pred CChhHHHHHHHHHhcC
Q 027523 195 PGEIELKDLVAKQLAS 210 (222)
Q Consensus 195 P~~~EL~~~I~~~l~~ 210 (222)
-+.++|.+.|.+++.+
T Consensus 128 r~~~~i~~fl~~~~~~ 143 (298)
T 3ed3_A 128 RTLAPIVDFSLSRIRS 143 (298)
T ss_dssp CSHHHHHHHHHTTCCC
T ss_pred cCHHHHHHHHHHhccc
Confidence 3889999999888743
No 43
>3rlk_A A1 protein; beta-barrel, polyproline helix, structural protein; HET: PG4; 1.76A {Enterobacteria phage qbeta} PDB: 3rlc_A*
Probab=67.61 E-value=2.5 Score=35.34 Aligned_cols=14 Identities=43% Similarity=0.698 Sum_probs=3.2
Q ss_pred CCCCCCCCCCCCCC
Q 027523 35 ASHHHHKPPIPSEN 48 (222)
Q Consensus 35 ~~~~~~~~~~~~~~ 48 (222)
||||||..|+|..+
T Consensus 2 ~~~~~~~~~~~~~~ 15 (192)
T 3rlk_A 2 HHHHHHSKPDPVIP 15 (192)
T ss_dssp --------CCCCCC
T ss_pred CccccCCCCCCccC
Confidence 56666666776333
No 44
>3hd5_A Thiol:disulfide interchange protein DSBA; protein structure initiative II(PSI II), NYSGXRC, structural genomics; 2.35A {Bordetella parapertussis}
Probab=67.58 E-value=41 Score=26.04 Aligned_cols=30 Identities=17% Similarity=0.096 Sum_probs=25.7
Q ss_pred cEEEEEecCCCCchhhHHHHHHHHHHhCCC
Q 027523 66 STVNINFCASCSYRGTAITMKRMLETQFPG 95 (222)
Q Consensus 66 ~tV~i~YC~sCgY~~~f~~lk~~L~~~yP~ 95 (222)
.+|...+-..|+|=..+...-+.+.++||+
T Consensus 27 ~~vv~f~d~~Cp~C~~~~~~l~~l~~~~~~ 56 (195)
T 3hd5_A 27 IEVLEFFAYTCPHCAAIEPMVEDWAKTAPQ 56 (195)
T ss_dssp EEEEEEECTTCHHHHHHHHHHHHHHHTCCT
T ss_pred eEEEEEECCCCccHHHhhHHHHHHHHHCCC
Confidence 477778888899999998888889999997
No 45
>3f4s_A Alpha-DSBA1, putative uncharacterized protein; thioredoxin-fold, oxidoreductase; HET: PGE; 1.55A {Wolbachia pipientis} PDB: 3f4r_A* 3f4t_A*
Probab=67.48 E-value=52 Score=27.17 Aligned_cols=147 Identities=8% Similarity=0.030 Sum_probs=78.7
Q ss_pred cccCCccEEEEEecCCCCchhhHHH-HHHHHHHhCC---CceeecccCCCChHHHHHHhhhhHH----H-HHHHHHHhhc
Q 027523 60 GGIGYGSTVNINFCASCSYRGTAIT-MKRMLETQFP---GIDVVLANYPPPLPKRLLAKVVPAV----Q-IGVIGIVVAG 130 (222)
Q Consensus 60 ~~~~~g~tV~i~YC~sCgY~~~f~~-lk~~L~~~yP---~i~V~G~nYPpp~~k~~Lak~v~~~----q-~~~i~~i~~G 130 (222)
|....-.||...+-..|.|=+.|+. +...|+++|+ +++++--++|..+.-...+++.-.+ + +-+.-.++..
T Consensus 35 G~~~A~vtIvef~Dy~CP~C~~~~~~~~~~l~~~~~~~g~V~~v~~~~p~~~~s~~Aa~aa~aa~~~~~f~~~~~aLF~~ 114 (226)
T 3f4s_A 35 GDPKAPILMIEYASLTCYHCSLFHRNVFPKIKEKYIDTGKMLYIFRHFPLDYRGLKAAMLSHCYEKQEDYFNFNKAVFNS 114 (226)
T ss_dssp SCTTCSEEEEEEECTTCHHHHHHHHHTHHHHHHHHTTTTSEEEEEEECCCSHHHHHHHHHGGGCCSHHHHHHHHHHHHHT
T ss_pred CCCCCCEEEEEEECCCCHHHHHHHHHHHHHHHHHcccCCeEEEEEEeCCCChhHHHHHHHHHHhhChHHHHHHHHHHHHh
Confidence 3333335888888999999999986 5678888884 5788888888866554445444331 1 2222233332
Q ss_pred cc---------------cccccCCCChhhHhhhhcchhhHHHHHHHHHHhhhhc-cCCCcEEEEEE---CCeEeEeeec-
Q 027523 131 EQ---------------IFPMLGMTPPPWYYSLRANRFGSIASTWLIGNFLQSF-LQSSGAFEVYC---NDDLVFSKLK- 190 (222)
Q Consensus 131 ~~---------------iF~~lG~~~P~w~~~~~~NK~~~~~~~~~~~n~l~~~-l~stGaFEV~v---ng~LV~SKl~- 190 (222)
.. +...+|+....+...+.+.+....+..-. -.... ++-+|.=-+.+ ||+.++-...
T Consensus 115 q~~~~~~~~~~~~~L~~iA~~~Gld~~~~~~~l~s~~~~~~v~~~~---~~a~~~~GV~GtPtfvv~~~nG~~~~Ga~~~ 191 (226)
T 3f4s_A 115 IDSWNYYNLSDLTLLQRIAALSNLKQDAFNQCINDKKIMDKIVNDK---SLAINKLGITAVPIFFIKLNDDKSYIEHNKV 191 (226)
T ss_dssp GGGSCSSSTTCCHHHHHHHHHTTCCHHHHHHHHTCHHHHHHHHHHH---HHHHHHHCCCSSCEEEEEECCTTCCCCGGGG
T ss_pred CHhhcccccCcHHHHHHHHHHcCCCHHHHHHHHhCHHHHHHHHHHH---HHHHHHcCCCcCCEEEEEcCCCEEeeCCCCc
Confidence 11 12234554433333333333322211111 11112 33344444556 9987653211
Q ss_pred -cCCCCChhHHHHHHHHHhc
Q 027523 191 -EGRFPGEIELKDLVAKQLA 209 (222)
Q Consensus 191 -~grfP~~~EL~~~I~~~l~ 209 (222)
..+.-+.+++.+.|++.+.
T Consensus 192 ~~~G~~~~e~l~~~I~~~l~ 211 (226)
T 3f4s_A 192 KHGGYKELKYFTNVIDKLYG 211 (226)
T ss_dssp EEESCCCHHHHHHHHHHHHH
T ss_pred ccccccCHHHHHHHHHHHHh
Confidence 1223358999999988764
No 46
>3qfq_A Large T antigen; origin binding domain, protein-DNA complex, replication, DNA protein-DNA complex; HET: DNA; 2.90A {Merkel cell polyomavirus}
Probab=66.33 E-value=6.3 Score=31.83 Aligned_cols=45 Identities=20% Similarity=0.245 Sum_probs=28.3
Q ss_pred CCCCCCCCCCcc---cccccCCccEEEEEecCCCCchhhHHHHHHHHHHhC
Q 027523 46 SENLTPDFPSQK---IVGGIGYGSTVNINFCASCSYRGTAITMKRMLETQF 93 (222)
Q Consensus 46 ~~~~~~~~~~~~---~~~~~~~g~tV~i~YC~sCgY~~~f~~lk~~L~~~y 93 (222)
.++.+.|||+.- .-.++..-.++.-.-.++ .....+++.+-|+ +|
T Consensus 10 ~~~~~~DfP~~L~~fLS~Ai~sNkt~~~FliyT--T~EK~~~Ly~kl~-kf 57 (135)
T 3qfq_A 10 ETPVPTDFPIDLSDYLSHAVYSNKTVSCFAIYT--TSDKAIELYDKIE-KF 57 (135)
T ss_dssp -CCCCCSSCGGGTTSSCCCSSCCCCEEEEEECC--CHHHHHHHHHHTG-GG
T ss_pred CCCCCCCChHHHHHHHhhHHHhcCCCceEEEEE--cHHHHHHHHHHHH-hc
Confidence 367889999776 334555555544443333 2677888888887 76
No 47
>3h93_A Thiol:disulfide interchange protein DSBA; disulfide bond, redox-active center, transcription regulator; HET: MSE GOL; 1.50A {Pseudomonas aeruginosa PAO1} SCOP: c.47.1.0
Probab=65.83 E-value=40 Score=26.05 Aligned_cols=138 Identities=12% Similarity=0.038 Sum_probs=70.9
Q ss_pred cEEEEEecCCCCchhhHHHHHHHHHHhCCCceeecccCCCC--hHHHHHHhhhhHHHH-----HHHHHHhh-----ccc-
Q 027523 66 STVNINFCASCSYRGTAITMKRMLETQFPGIDVVLANYPPP--LPKRLLAKVVPAVQI-----GVIGIVVA-----GEQ- 132 (222)
Q Consensus 66 ~tV~i~YC~sCgY~~~f~~lk~~L~~~yP~i~V~G~nYPpp--~~k~~Lak~v~~~q~-----~~i~~i~~-----G~~- 132 (222)
.+|...+-..|.|=..+...-+.+.++||+ +|.-..+|.+ +.-...+++.-.++- -+.-.++. |.+
T Consensus 27 ~~i~~f~d~~Cp~C~~~~~~l~~l~~~~~~-~v~~~~~p~~~~~~~~~aa~a~~aa~~~g~~~~~~~~lf~~~~~~~~~~ 105 (192)
T 3h93_A 27 IEVVELFWYGCPHCYAFEPTIVPWSEKLPA-DVHFVRLPALFGGIWNVHGQMFLTLESMGVEHDVHNAVFEAIHKEHKKL 105 (192)
T ss_dssp EEEEEEECTTCHHHHHHHHHHHHHHHTCCT-TEEEEEEECCCSTHHHHHHHHHHHHHHHTCCHHHHHHHHHHHHTSCCCC
T ss_pred CEEEEEECCCChhHHHhhHHHHHHHHhCCC-CeEEEEEehhhccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCcCC
Confidence 578888889999999998888889999998 4444456654 222223332222211 01111111 222
Q ss_pred --------cccccCCCChhhHhhhhcchhhHHHHHHHHHHhhhhccCCCcEEEEEECCeEeEeeeccCCCCChhHHHHHH
Q 027523 133 --------IFPMLGMTPPPWYYSLRANRFGSIASTWLIGNFLQSFLQSSGAFEVYCNDDLVFSKLKEGRFPGEIELKDLV 204 (222)
Q Consensus 133 --------iF~~lG~~~P~w~~~~~~NK~~~~~~~~~~~n~l~~~l~stGaFEV~vng~LV~SKl~~grfP~~~EL~~~I 204 (222)
+...+|+....+...+...+....+-.-. ... ...+-+|.=.+.+||+.+++--. .-+.+++.+.|
T Consensus 106 ~~~~~l~~~a~~~Gld~~~~~~~~~~~~~~~~v~~~~-~~a--~~~gv~gtPt~~vng~~~~~~~G---~~~~e~l~~~i 179 (192)
T 3h93_A 106 ATPEEMADFLAGKGVDKEKFLSTYNSFAIKGQMEKAK-KLA--MAYQVTGVPTMVVNGKYRFDIGS---AGGPEETLKLA 179 (192)
T ss_dssp CSHHHHHHHHHTTTCCHHHHHHHHTCHHHHHHHHHHH-HHH--HHHTCCSSSEEEETTTEEEEHHH---HTSHHHHHHHH
T ss_pred CCHHHHHHHHHHcCCCHHHHHHHhhCHHHHHHHHHHH-HHH--HHhCCCCCCeEEECCEEEecccc---cCCHHHHHHHH
Confidence 23445665444444443333322211111 001 11223333333459999887211 12578888888
Q ss_pred HHHhcC
Q 027523 205 AKQLAS 210 (222)
Q Consensus 205 ~~~l~~ 210 (222)
+..+..
T Consensus 180 ~~l~~k 185 (192)
T 3h93_A 180 DYLIEK 185 (192)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 887654
No 48
>3osr_A Maltose-binding periplasmic protein, green fluore protein; engineered protein, sensor protein, fluorescent protein, MBP maltose sensor; HET: C12 MAL; 2.00A {Escherichia coli}
Probab=65.37 E-value=11 Score=36.42 Aligned_cols=38 Identities=13% Similarity=0.066 Sum_probs=25.1
Q ss_pred CccEEEEEecCCCCchhhHHHHHHHHHHhCCCceeecccC
Q 027523 64 YGSTVNINFCASCSYRGTAITMKRMLETQFPGIDVVLANY 103 (222)
Q Consensus 64 ~g~tV~i~YC~sCgY~~~f~~lk~~L~~~yP~i~V~G~nY 103 (222)
...+|++- +.+=.....++++.+..+++ |+++|+-..+
T Consensus 39 ~~~tLtvw-~~~~~~~~~~~~li~~Fek~-pgIkV~~~~~ 76 (653)
T 3osr_A 39 EEGKLVIW-INGDKGYNGLAEVGKKFEKD-TGIKVTVEHP 76 (653)
T ss_dssp CTTEEEEE-CCTTSCHHHHHHHHHHHHHH-HSCEEEEECC
T ss_pred CCCEEEEE-ecCCchHHHHHHHHHHHHhh-hCCEEEEEEC
Confidence 34566663 33333456678888888888 9999886643
No 49
>1w4v_A Thioredoxin, mitochondrial; antioxidant enzyme, mitochondrion, electron TRA oxidoreductase; 1.80A {Homo sapiens} PDB: 1uvz_A 1w89_A
Probab=64.72 E-value=16 Score=26.00 Aligned_cols=31 Identities=19% Similarity=0.200 Sum_probs=22.9
Q ss_pred EEEEEECCeEeEeeeccCCCCChhHHHHHHHHHh
Q 027523 175 AFEVYCNDDLVFSKLKEGRFPGEIELKDLVAKQL 208 (222)
Q Consensus 175 aFEV~vng~LV~SKl~~grfP~~~EL~~~I~~~l 208 (222)
.|-++-||+.++. .. +..+.+++.+.|++.+
T Consensus 88 t~~~~~~G~~~~~-~~--G~~~~~~l~~~l~~~l 118 (119)
T 1w4v_A 88 TVLAMKNGDVVDK-FV--GIKDEDQLEAFLKKLI 118 (119)
T ss_dssp EEEEEETTEEEEE-EE--SCCCHHHHHHHHHHHH
T ss_pred EEEEEeCCcEEEE-Ec--CCCCHHHHHHHHHHHh
Confidence 5666779998863 33 3568899999998876
No 50
>2kn9_A Rubredoxin; metalloprotein, ssgcid, structural genomics, seattle structural genomics center for infectious electron transport, iron; NMR {Mycobacterium tuberculosis}
Probab=64.46 E-value=5.1 Score=29.61 Aligned_cols=13 Identities=15% Similarity=0.628 Sum_probs=10.5
Q ss_pred EEEEEecCCCCch
Q 027523 67 TVNINFCASCSYR 79 (222)
Q Consensus 67 tV~i~YC~sCgY~ 79 (222)
.+..-.|..|||-
T Consensus 24 em~~y~C~vCGyv 36 (81)
T 2kn9_A 24 DYKLFRCIQCGFE 36 (81)
T ss_dssp CCCEEEETTTCCE
T ss_pred CcceEEeCCCCEE
Confidence 4567889999975
No 51
>2hdi_B Colicin-IA; outer membrane, iron transport, TONB BOX, signal transductio colicin I receptor, receptor ligand, membrane protein; HET: LDA; 2.50A {Escherichia coli}
Probab=63.87 E-value=1.5 Score=33.52 Aligned_cols=53 Identities=21% Similarity=0.371 Sum_probs=28.0
Q ss_pred CCCCCCCcc-------cccccCCccEEEEEecCCCCchhhH--------HHH-HHHHHHhCCCc--eeecc
Q 027523 49 LTPDFPSQK-------IVGGIGYGSTVNINFCASCSYRGTA--------ITM-KRMLETQFPGI--DVVLA 101 (222)
Q Consensus 49 ~~~~~~~~~-------~~~~~~~g~tV~i~YC~sCgY~~~f--------~~l-k~~L~~~yP~i--~V~G~ 101 (222)
+|-.||... +.|..-...|++|..-.--.-|.+. .+| .+.|..+-|-+ +|+|+
T Consensus 20 spekfpgrsstnhsi~vsg~~rfagtikitt~~vidnranlnyllshs~ldy~~nil~drnpvvtedvegd 90 (113)
T 2hdi_B 20 SPEKFPGRSSTNHSIVVSGDPRFAGTIKITTSAVIDNRANLNYLLSHSGLDYKRNILNDRNPVVTEDVEGD 90 (113)
T ss_dssp CTTTSCEEEEEEEEEEECSCTTTCEEEEEEEEEEECSHHHHHHHHHSCHHHHHHHTSCCCCSCCSSCHHHH
T ss_pred CcccCCCCCCCCceEEEcCCCceeeEEEEeechhcccccchhhhhhccchhhhhhhhcCCCCeeecccccc
Confidence 667788654 4455556678887654332223221 233 34455556655 46653
No 52
>3otg_A CALG1; calicheamicin, TDP, structural genomics, PSI-2, protein STRU initiative, center for eukaryotic structural genomics, CESG fold; HET: TYD; 2.08A {Micromonospora echinospora} PDB: 3oth_A*
Probab=63.59 E-value=4.4 Score=34.68 Aligned_cols=28 Identities=7% Similarity=0.128 Sum_probs=13.7
Q ss_pred ccEEEEEecCCCC--chhhHHHHHHHHHHh
Q 027523 65 GSTVNINFCASCS--YRGTAITMKRMLETQ 92 (222)
Q Consensus 65 g~tV~i~YC~sCg--Y~~~f~~lk~~L~~~ 92 (222)
+.+++|.++..-+ -......+.+.|.++
T Consensus 18 ~~~MrIl~~~~~~~Gh~~~~~~la~~L~~~ 47 (412)
T 3otg_A 18 GRHMRVLFASLGTHGHTYPLLPLATAARAA 47 (412)
T ss_dssp CCSCEEEEECCSSHHHHGGGHHHHHHHHHT
T ss_pred cceeEEEEEcCCCcccHHHHHHHHHHHHHC
Confidence 3345666555332 112234666666665
No 53
>3oo8_A ABC transporter binding protein ACBH; class 2 SBP fold, ABC transporter extracellular solute bindi protein, D-galactose binding; 1.60A {Actinoplanes} PDB: 3oo6_A* 3oo7_A 3oo9_A 3ooa_A
Probab=62.94 E-value=5.8 Score=34.24 Aligned_cols=41 Identities=7% Similarity=0.002 Sum_probs=28.0
Q ss_pred CCccEEEEEecCCCC-chhhHHHHHHHHHHhCCCceeecccCC
Q 027523 63 GYGSTVNINFCASCS-YRGTAITMKRMLETQFPGIDVVLANYP 104 (222)
Q Consensus 63 ~~g~tV~i~YC~sCg-Y~~~f~~lk~~L~~~yP~i~V~G~nYP 104 (222)
+.+.+|+|....+=. ....++++.+..++++| ++|+-+.+|
T Consensus 25 ~~~~~lti~~~~~~~~~~~~~~~~~~~f~~~~~-i~V~~~~~~ 66 (415)
T 3oo8_A 25 DGNGPITFGSNYSDEAPKAAFASLMQQATTSTT-VPVTVNTTD 66 (415)
T ss_dssp -CCCCEEEEECCCSHHHHHHHHHHHHHHHHHHC-CCEEEEECC
T ss_pred CCCceEEEEeecCCcchhHHHHHHHHHHHHhCC-eeEEEEecC
Confidence 344577776544322 34578888889999999 988876664
No 54
>3gzg_A Molybdate-binding periplasmic protein; permease; molybdate complex, mutant K127S, metal binding protein; 1.55A {Xanthomonas axonopodis PV} PDB: 2h5y_A
Probab=62.31 E-value=5.1 Score=33.66 Aligned_cols=31 Identities=16% Similarity=0.155 Sum_probs=22.8
Q ss_pred cEEEEEecCCCCchhhHHHHHHHHHHhCCCceee
Q 027523 66 STVNINFCASCSYRGTAITMKRMLETQFPGIDVV 99 (222)
Q Consensus 66 ~tV~i~YC~sCgY~~~f~~lk~~L~~~yP~i~V~ 99 (222)
.+|+|. | +-+++..++++.+..++++ +++|+
T Consensus 23 ~~L~V~-~-a~s~~~~~~~l~~~Fe~~~-gi~V~ 53 (253)
T 3gzg_A 23 APVTVF-A-AASLKESMDEAATAYEKAT-GTPVR 53 (253)
T ss_dssp CCEEEE-E-EGGGHHHHHHHHHHHHHHH-SCCEE
T ss_pred CCEEEE-E-ecChHHHHHHHHHHHHHHh-CCeEE
Confidence 456664 3 2257889999999999988 88765
No 55
>3tla_A MCCF; serine protease, hydrolase; 1.20A {Escherichia coli} PDB: 3tle_A* 3tlg_A 3tlb_A* 3tlc_A* 3tlz_A* 3tly_A
Probab=62.29 E-value=6.7 Score=35.74 Aligned_cols=36 Identities=11% Similarity=0.186 Sum_probs=24.3
Q ss_pred ccCCccEEEEEecCCCC---chhhHHHHHHHHHHhCCCcee
Q 027523 61 GIGYGSTVNINFCASCS---YRGTAITMKRMLETQFPGIDV 98 (222)
Q Consensus 61 ~~~~g~tV~i~YC~sCg---Y~~~f~~lk~~L~~~yP~i~V 98 (222)
..-.|.+|-|.=|.|.. .+.+++.-.+.|++ =|++|
T Consensus 39 ~Lk~GD~I~ivaPSs~~~~~~~~~~~~~~~~L~~--~G~~v 77 (371)
T 3tla_A 39 PLAVGDTIGFFSSSAPATVTAKNRFFRGVEFLQR--KGFKL 77 (371)
T ss_dssp CCCTTCEEEEECSSCCHHHHTHHHHHHHHHHHHH--TTCEE
T ss_pred CCCCcCEEEEEeCCCCccccCHHHHHHHHHHHHh--CCCEE
Confidence 34578899998776654 35677777778876 35544
No 56
>3dml_A Putative uncharacterized protein; thioredoxin, oxidoreductase, sulfur oxidation, thiol- disulfide oxidoreductase; HET: MSE; 1.90A {Paracoccus denitrificans} PDB: 3d4t_A*
Probab=62.28 E-value=22 Score=27.15 Aligned_cols=35 Identities=20% Similarity=0.282 Sum_probs=27.0
Q ss_pred CCcEEEEEECCeEeEeeeccCCCCChhHHHHHHHHHhc
Q 027523 172 SSGAFEVYCNDDLVFSKLKEGRFPGEIELKDLVAKQLA 209 (222)
Q Consensus 172 stGaFEV~vng~LV~SKl~~grfP~~~EL~~~I~~~l~ 209 (222)
++=.|-++-||+.|. |+. ++.+.+++.+.++..+.
T Consensus 76 g~PT~i~f~~G~ev~-Ri~--G~~~~~~f~~~L~~~l~ 110 (116)
T 3dml_A 76 FTPTFVLMAGDVESG-RLE--GYPGEDFFWPMLARLIG 110 (116)
T ss_dssp SSSEEEEEETTEEEE-EEE--CCCCHHHHHHHHHHHHH
T ss_pred CCCEEEEEECCEEEe-eec--CCCCHHHHHHHHHHHHh
Confidence 455688888999998 665 47778999998888764
No 57
>2x7q_A Ca3427, possible thiamine biosynthesis enzyme; unknown function; 2.00A {Candida albicans} PDB: 2x7p_A
Probab=61.47 E-value=9 Score=32.32 Aligned_cols=38 Identities=5% Similarity=0.171 Sum_probs=17.2
Q ss_pred EEEEEecCCCCchhhHHHHHH-HHHHhCCCceeecccCCCC
Q 027523 67 TVNINFCASCSYRGTAITMKR-MLETQFPGIDVVLANYPPP 106 (222)
Q Consensus 67 tV~i~YC~sCgY~~~f~~lk~-~L~~~yP~i~V~G~nYPpp 106 (222)
+++|-|-..-++..-|.-.++ ++++. +++|+-.+++-.
T Consensus 16 ~l~ig~~~~~~~~p~~~A~~~G~~~~~--Gl~V~~~~~~~g 54 (321)
T 2x7q_A 16 TLKVAYIPEHFSTPLFFAQQQGYYKAH--DLSIEFVKVPEG 54 (321)
T ss_dssp CEEEEECCSGGGHHHHHHHHTTHHHHT--TCCEEEEECTTC
T ss_pred eEEEEeeCCccchHHHHHHHCCcHHHC--CceEEEEECCCC
Confidence 345555433334444433333 33332 666665555544
No 58
>4akv_A Sorting nexin-33; transport protein, organelle biogenesis; 2.65A {Homo sapiens}
Probab=60.25 E-value=2.8 Score=38.20 Aligned_cols=28 Identities=21% Similarity=0.093 Sum_probs=19.0
Q ss_pred hHHHHHHHHHHhCCCceeecccCCCChHHHHHH
Q 027523 81 TAITMKRMLETQFPGIDVVLANYPPPLPKRLLA 113 (222)
Q Consensus 81 ~f~~lk~~L~~~yP~i~V~G~nYPpp~~k~~La 113 (222)
.|..+.+.|.++||++.| ||-|.|+.++
T Consensus 81 dF~~L~~~L~~~~p~~~i-----P~lP~K~~~g 108 (386)
T 4akv_A 81 HFDWLYNRLLHKFTVISV-----PHLPEKQATG 108 (386)
T ss_dssp HHHHHHHHHHHHCSSSCC-----CCCCCCC---
T ss_pred HHHHHHHHHHHhCCCCCC-----CCCCCCcccC
Confidence 578889999999999754 5555555543
No 59
>2ju5_A Thioredoxin disulfide isomerase; protein, oxidoreductase; NMR {Chlamydophila pneumoniae}
Probab=60.24 E-value=39 Score=25.37 Aligned_cols=32 Identities=16% Similarity=0.117 Sum_probs=22.4
Q ss_pred EEEE-ECCeEeEeeeccCCCC-ChhHHHHHHHHHhcC
Q 027523 176 FEVY-CNDDLVFSKLKEGRFP-GEIELKDLVAKQLAS 210 (222)
Q Consensus 176 FEV~-vng~LV~SKl~~grfP-~~~EL~~~I~~~l~~ 210 (222)
+-++ -||+.++.. |..| +.+++.+.|++.+..
T Consensus 120 ~~~~d~~G~~~~~~---G~~~~~~~~l~~~l~~~l~~ 153 (154)
T 2ju5_A 120 LVFIDAEGKQLARM---GFEPGGGAAYVSKVKSALKL 153 (154)
T ss_dssp EEEECTTCCEEEEE---CCCTTCHHHHHHHHHHHHTC
T ss_pred EEEEcCCCCEEEEe---cCCCCCHHHHHHHHHHHHhc
Confidence 4443 489998854 4333 889999999988753
No 60
>3ksx_A Nitrate transport protein; SSUA, alkanesulfonate-binding protein, periplasmic-binding P transport protein; HET: MPO; 1.70A {Xanthomonas axonopodis PV} PDB: 3e4r_A* 3ksj_A*
Probab=58.89 E-value=9.2 Score=32.06 Aligned_cols=38 Identities=18% Similarity=0.449 Sum_probs=25.4
Q ss_pred ccEEEEEecCCCCchhh-HHHHHHHHHHhCCCceeecccCC
Q 027523 65 GSTVNINFCASCSYRGT-AITMKRMLETQFPGIDVVLANYP 104 (222)
Q Consensus 65 g~tV~i~YC~sCgY~~~-f~~lk~~L~~~yP~i~V~G~nYP 104 (222)
..+|+|-|-.. +..- +.+-+.++++++++++|+-.+|+
T Consensus 28 ~~~lrig~~~~--~~p~~~a~~~g~~~~~~~g~~v~~~~~~ 66 (324)
T 3ksx_A 28 PAQLRIGYQKA--VSSLVLAKQHRLLEQRFPRTKITWVEFP 66 (324)
T ss_dssp CSEEEEEEETT--CHHHHHHHHHTHHHHHCTTSEEEEEEES
T ss_pred CCeEEEEecCC--chhHHHHHhhCHHHHhcCCCceEEEECC
Confidence 35788887664 2322 23345678889999988877665
No 61
>2p31_A CL683, glutathione peroxidase 7; thioredoxin fold, NPGPX, phospholipid hydroperoxidase, struc genomics, structural genomics consortium, SGC; 2.00A {Homo sapiens}
Probab=58.40 E-value=59 Score=24.84 Aligned_cols=32 Identities=9% Similarity=-0.082 Sum_probs=22.4
Q ss_pred cEEEEEECCeEeEeeeccCCCCChhHHHHHHHHHh
Q 027523 174 GAFEVYCNDDLVFSKLKEGRFPGEIELKDLVAKQL 208 (222)
Q Consensus 174 GaFEV~vng~LV~SKl~~grfP~~~EL~~~I~~~l 208 (222)
..|-|.=||++++... | ..+.++|.+.|++.+
T Consensus 149 ~~~lid~~G~i~~~~~--g-~~~~~~l~~~i~~ll 180 (181)
T 2p31_A 149 WKYLVAPDGKVVGAWD--P-TVSVEEVRPQITALV 180 (181)
T ss_dssp CEEEECTTSCEEEEEC--T-TSCHHHHHHHHHTTC
T ss_pred eEEEEcCCCCEEEEeC--C-CCCHHHHHHHHHHHh
Confidence 3566666899998643 2 347788988888654
No 62
>2eke_C Ubiquitin-like protein SMT3; UBC9, SUMO binding motif, SBM, ligase/protein binding complex; 1.90A {Saccharomyces cerevisiae} SCOP: d.15.1.1
Probab=58.04 E-value=18 Score=27.33 Aligned_cols=25 Identities=8% Similarity=0.020 Sum_probs=14.1
Q ss_pred CccEEEEEecCCCCchhhHHHHHHH
Q 027523 64 YGSTVNINFCASCSYRGTAITMKRM 88 (222)
Q Consensus 64 ~g~tV~i~YC~sCgY~~~f~~lk~~ 88 (222)
.|.++.|.--.+.-.++-++.|.+.
T Consensus 39 ~g~~i~fkIk~tt~l~kL~~ay~ek 63 (106)
T 2eke_C 39 GSSEIFFKIKKTTPLRRLMEAFAKR 63 (106)
T ss_dssp SSCEEEEEEETTSCTHHHHHHHHHH
T ss_pred CCcEEEEEeCCCCHHHHHHHHHHHH
Confidence 4556666655555556665555543
No 63
>1zxj_A MPN555, hypothetical protein Mg377 homolog; mostly alpha helical protein, TRI-lobal structure, structural genomics, PSI; 2.80A {Mycoplasma pneumoniae}
Probab=57.63 E-value=12 Score=32.00 Aligned_cols=58 Identities=17% Similarity=0.202 Sum_probs=29.1
Q ss_pred CCCCCCCCCCCCCCCCCCCc---------ccccccCCccEEEEEecCCCCchhhHHHHHHHHHHhCCCc
Q 027523 37 HHHHKPPIPSENLTPDFPSQ---------KIVGGIGYGSTVNINFCASCSYRGTAITMKRMLETQFPGI 96 (222)
Q Consensus 37 ~~~~~~~~~~~~~~~~~~~~---------~~~~~~~~g~tV~i~YC~sCgY~~~f~~lk~~L~~~yP~i 96 (222)
|||||..+-|+...+-|-.. |.+-+|..|.++.|.--..- -..-++++..|++++..-
T Consensus 6 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~--~etleeLKe~Irk~le~e 72 (218)
T 1zxj_A 6 HHHHHDYDIPTTENLYFQGHMATNLKSTAKLVKPIQYDEVIEVERIFAD--PAFIEQHRQRILASFKDA 72 (218)
T ss_dssp -----CCCC-------CCSSCC-CCSCEEEECSCCCTTSCEEECCSCCC--HHHHHHHHHHHHTTCTTC
T ss_pred ccccccCCCCccchhhhhhHHHHHHHHHHhhcCCccCCceEEEEEeeCC--cccHHHHHHHHHHHHHHH
Confidence 33344344345455555444 45566788888877633221 355688888888888765
No 64
>1xg8_A Hypothetical protein SA0798; structural genomics, protein structure initative, MCSG, PSI, protein structure initiative; 2.10A {Staphylococcus aureus subsp} SCOP: c.47.1.17
Probab=57.34 E-value=6.5 Score=30.75 Aligned_cols=28 Identities=25% Similarity=0.561 Sum_probs=24.0
Q ss_pred ecCCCC----chhhHHHHHHHHHHhCCCceee
Q 027523 72 FCASCS----YRGTAITMKRMLETQFPGIDVV 99 (222)
Q Consensus 72 YC~sCg----Y~~~f~~lk~~L~~~yP~i~V~ 99 (222)
-|.||- -+.+|+=|+.+|..|||+..++
T Consensus 18 iCASCVnaPSSkeTyEWLqAal~RKyp~~~f~ 49 (111)
T 1xg8_A 18 ICASCVNAPTSKDIYDWLQPLLKRKYPNISFK 49 (111)
T ss_dssp CCGGGSSSCCHHHHHHHHHHHHHHHCTTSCEE
T ss_pred cchhccCCCCchhHHHHHHHHHhCcCCCCceE
Confidence 599994 7889999999999999997543
No 65
>2v84_A Spermidine/putrescine ABC transporter, periplasmi binding protein; polyamine binding, SYPH spermidine, lipoprotein, transport protein; HET: MES; 1.78A {Treponema pallidum}
Probab=56.00 E-value=7.8 Score=32.80 Aligned_cols=35 Identities=17% Similarity=0.394 Sum_probs=21.6
Q ss_pred ccEEEEEecCCCCchhhHHHHHHHHHHhCCCceeecccCC
Q 027523 65 GSTVNINFCASCSYRGTAITMKRMLETQFPGIDVVLANYP 104 (222)
Q Consensus 65 g~tV~i~YC~sCgY~~~f~~lk~~L~~~yP~i~V~G~nYP 104 (222)
+.+|+|..+.+ +. .+++.+..++++ ++.|+-+.++
T Consensus 24 ~~~l~v~~w~~--~~--~~~~~~~Fe~~~-gi~V~~~~~~ 58 (343)
T 2v84_A 24 QDVLYLYNWTY--YT--PTSLIKKFEQQY-NVQVVYDDYA 58 (343)
T ss_dssp -CEEEEEEETT--TS--CHHHHHHHHHHH-TCEEEEEEES
T ss_pred CCeEEEEeccc--cc--CHHHHHHHHHHH-CCEEEEEeCC
Confidence 34788776643 32 256666667776 8988766553
No 66
>2w7y_A FCSSBP, probable sugar ABC transporter, sugar-binding protein; solute-binding protein, blood group antigen, carbohydrate transport; HET: A2G GAL FUC; 2.35A {Streptococcus pneumoniae}
Probab=55.83 E-value=9 Score=33.34 Aligned_cols=27 Identities=11% Similarity=0.053 Sum_probs=17.3
Q ss_pred hhhHHHHHHHHHHhCCCceeecccCCC
Q 027523 79 RGTAITMKRMLETQFPGIDVVLANYPP 105 (222)
Q Consensus 79 ~~~f~~lk~~L~~~yP~i~V~G~nYPp 105 (222)
...++++.+..++++|++.|+-+.+|-
T Consensus 56 ~~~~~~~~~~f~~~~p~i~V~~~~~~~ 82 (430)
T 2w7y_A 56 AKTMRDLYDKFAEEHKDSGVEFKPTPV 82 (430)
T ss_dssp HHHHHHHHHHHHHHC--CCSEEEEEEC
T ss_pred HHHHHHHHHHHHHHCCCceEEEEeCCC
Confidence 345677777888999998776555543
No 67
>2yln_A Putative ABC transporter, periplasmic binding Pro amino acid; transport protein, solute-BIND protein; HET: CYS GOL; 1.12A {Neisseria gonorrhoeae} PDB: 3zsf_A
Probab=55.52 E-value=14 Score=30.10 Aligned_cols=26 Identities=15% Similarity=0.388 Sum_probs=17.3
Q ss_pred chhhHHHHHHHHHHhCCCceeecccCC
Q 027523 78 YRGTAITMKRMLETQFPGIDVVLANYP 104 (222)
Q Consensus 78 Y~~~f~~lk~~L~~~yP~i~V~G~nYP 104 (222)
+.+-+.++.+.+.++. +++|+-..+|
T Consensus 79 ~~G~~~dl~~~i~~~~-G~~v~~~~~~ 104 (283)
T 2yln_A 79 LTGYDVEVTRAVAEKL-GVKVEFKETQ 104 (283)
T ss_dssp EESHHHHHHHHHHHHH-TCEEEEEECC
T ss_pred EeeehHHHHHHHHHHc-CCceEEEECC
Confidence 3456667777777776 7777666664
No 68
>4e3z_A Putative oxidoreductase protein; PSI-biology, structural genomics, protein structure initiati nysgrc,oxidoreductase; 2.00A {Rhizobium etli}
Probab=54.39 E-value=24 Score=28.91 Aligned_cols=48 Identities=15% Similarity=0.057 Sum_probs=23.9
Q ss_pred ccEEEEEecCCCCchhhHHHHHHHHHHhCCCce-eecccCCCChHHHHHHhh
Q 027523 65 GSTVNINFCASCSYRGTAITMKRMLETQFPGID-VVLANYPPPLPKRLLAKV 115 (222)
Q Consensus 65 g~tV~i~YC~sCgY~~~f~~lk~~L~~~yP~i~-V~G~nYPpp~~k~~Lak~ 115 (222)
|.+|.+.+..+ +...+++.+.+++.-+++. +.++--.+...++++.++
T Consensus 50 G~~V~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~v~~~~~~~ 98 (272)
T 4e3z_A 50 GWRVGVNYAAN---REAADAVVAAITESGGEAVAIPGDVGNAADIAAMFSAV 98 (272)
T ss_dssp TCEEEEEESSC---HHHHHHHHHHHHHTTCEEEEEECCTTCHHHHHHHHHHH
T ss_pred CCEEEEEcCCC---hhHHHHHHHHHHhcCCcEEEEEcCCCCHHHHHHHHHHH
Confidence 34565543332 5566777777776655543 333333333444444444
No 69
>3mng_A Peroxiredoxin-5, mitochondrial; peroxidase, PRXV, substrate analog, DTT, oxidoreductase; 1.45A {Homo sapiens} SCOP: c.47.1.10 PDB: 2vl3_A 1oc3_A 2vl2_A 2vl9_A 1urm_A 1hd2_A 1h4o_A
Probab=54.10 E-value=6.8 Score=31.17 Aligned_cols=33 Identities=3% Similarity=-0.148 Sum_probs=22.2
Q ss_pred CCcEEEEEECCeEeEeeeccCC-CCChhHHHHHHH
Q 027523 172 SSGAFEVYCNDDLVFSKLKEGR-FPGEIELKDLVA 205 (222)
Q Consensus 172 stGaFEV~vng~LV~SKl~~gr-fP~~~EL~~~I~ 205 (222)
....|-|- ||+++|....... --+..|..++++
T Consensus 138 ~r~tfvID-dG~I~~~~v~~~~~g~~~~~~~~vl~ 171 (173)
T 3mng_A 138 KRFSMVVQ-DGIVKALNVEPDGTGLTCSLAPNIIS 171 (173)
T ss_dssp CCEEEEEE-TTEEEEEEECTTSSCSSTTSHHHHHH
T ss_pred EEEEEEEE-CCEEEEEEEeCCCCCcchHHHHHHHH
Confidence 57899999 9999999988531 114444444443
No 70
>2gek_A Phosphatidylinositol mannosyltransferase (PIMA); GT4 glycosyltransferase, rossmann fold, complex; HET: GDP; 2.40A {Mycobacterium smegmatis} PDB: 2gej_A*
Probab=53.67 E-value=7.7 Score=32.69 Aligned_cols=29 Identities=14% Similarity=0.299 Sum_probs=16.2
Q ss_pred CccEEEEEecCC------CCchhhHHHHHHHHHHh
Q 027523 64 YGSTVNINFCAS------CSYRGTAITMKRMLETQ 92 (222)
Q Consensus 64 ~g~tV~i~YC~s------CgY~~~f~~lk~~L~~~ 92 (222)
.+..++|.+... .|......++.+.|.++
T Consensus 17 ~~~~MkIl~i~~~~~~~~gG~~~~~~~l~~~L~~~ 51 (406)
T 2gek_A 17 RGSHMRIGMVCPYSFDVPGGVQSHVLQLAEVLRDA 51 (406)
T ss_dssp ----CEEEEECSSCTTSCCHHHHHHHHHHHHHHHT
T ss_pred CCCcceEEEEeccCCCCCCcHHHHHHHHHHHHHHC
Confidence 334456666553 23445677888888876
No 71
>1uj8_A ORF3, hypothetical protein YFHJ; iron-sulfur cluster, ISC, structural genomics, unknown function; 1.75A {Escherichia coli} SCOP: a.159.5.1 PDB: 2bzt_A
Probab=53.01 E-value=12 Score=27.54 Aligned_cols=18 Identities=17% Similarity=0.359 Sum_probs=15.5
Q ss_pred hHHHHHHHHHHhCCCcee
Q 027523 81 TAITMKRMLETQFPGIDV 98 (222)
Q Consensus 81 ~f~~lk~~L~~~yP~i~V 98 (222)
.-++++..|.++||+++.
T Consensus 18 D~~dIA~~L~e~~Pd~DP 35 (77)
T 1uj8_A 18 DSREIGEALYDAYPDLDP 35 (77)
T ss_dssp CHHHHHHHHHHHSTTSCG
T ss_pred CHHHHHHHHHHHCCCCCc
Confidence 568899999999999864
No 72
>2r9r_B Paddle chimera voltage gated potassium channel KV; voltage sensor, voltage dependent, ION CH shaker, membrane protein, eukaryotic; HET: NAP PGW; 2.40A {Rattus norvegicus} PDB: 3lnm_B* 3lut_B* 2a79_B*
Probab=52.96 E-value=2.9 Score=39.44 Aligned_cols=13 Identities=31% Similarity=0.629 Sum_probs=6.0
Q ss_pred HHHHHHHHhhhhc
Q 027523 157 ASTWLIGNFLQSF 169 (222)
Q Consensus 157 ~~~~~~~n~l~~~ 169 (222)
..+||.-+++-.+
T Consensus 248 ~~~iFtiE~ilR~ 260 (514)
T 2r9r_B 248 CIIWFSFEFLVRF 260 (514)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 3444554544443
No 73
>3kl4_B DPAP B, YSCV, signal peptide of yeast dipeptidyl aminopeptidase; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Saccharomyces cerevisiae}
Probab=51.75 E-value=4.3 Score=26.16 Aligned_cols=7 Identities=43% Similarity=0.771 Sum_probs=2.9
Q ss_pred CCCCCCC
Q 027523 33 KSASHHH 39 (222)
Q Consensus 33 ~~~~~~~ 39 (222)
|+|||||
T Consensus 35 phhhhhh 41 (42)
T 3kl4_B 35 PHHHHHH 41 (42)
T ss_pred ccccccC
Confidence 4444433
No 74
>3p7i_A PHND, subunit of alkylphosphonate ABC transporter; phosphonate binding protein, transport protein; 1.71A {Escherichia coli UTI89} PDB: 3qk6_A 3quj_A* 3s4u_A
Probab=49.44 E-value=13 Score=32.32 Aligned_cols=32 Identities=16% Similarity=0.269 Sum_probs=17.9
Q ss_pred EEEEEecCCCC---chhhHHHHHHHHHHhCCCceee
Q 027523 67 TVNINFCASCS---YRGTAITMKRMLETQFPGIDVV 99 (222)
Q Consensus 67 tV~i~YC~sCg---Y~~~f~~lk~~L~~~yP~i~V~ 99 (222)
+++|-+-..=+ +...|..+.+.|.++. |+.|+
T Consensus 15 ~l~~Gv~p~~~~~~~~~~~~~l~~~L~k~l-G~~ve 49 (321)
T 3p7i_A 15 ALNFGIISTESQQNLKPQWTPFLQDMEKKL-GVKVN 49 (321)
T ss_dssp CEEEEECCSSCHHHHHHHHHHHHHHHHHHH-TSCEE
T ss_pred cEEEEEecCCCHHHHHHHHHHHHHHHHHHH-CCCEE
Confidence 44554444333 4556677777777775 44444
No 75
>3cio_A ETK, tyrosine-protein kinase ETK; WZC, escherichia coli tyrosine kinase domain, signaling protein, transferase, inner membrane, membrane; 2.50A {Escherichia coli}
Probab=49.36 E-value=3.5 Score=35.59 Aligned_cols=16 Identities=6% Similarity=0.032 Sum_probs=8.9
Q ss_pred chhhHHHHHHHHHHhC
Q 027523 78 YRGTAITMKRMLETQF 93 (222)
Q Consensus 78 Y~~~f~~lk~~L~~~y 93 (222)
+...|..++..|+-..
T Consensus 84 ~~Ea~r~lrt~l~~~~ 99 (299)
T 3cio_A 84 AVEAVRALRTSLHFAM 99 (299)
T ss_dssp HHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHhc
Confidence 3455666666665543
No 76
>2gjv_A Putative cytoplasmic protein; structural genomics, unknown function, PSI, protein structur initiative; 2.39A {Salmonella typhimurium} SCOP: d.323.1.2
Probab=49.24 E-value=12 Score=31.47 Aligned_cols=23 Identities=17% Similarity=0.205 Sum_probs=19.0
Q ss_pred chhhHHHHHHHHHHhCCCceeec
Q 027523 78 YRGTAITMKRMLETQFPGIDVVL 100 (222)
Q Consensus 78 Y~~~f~~lk~~L~~~yP~i~V~G 100 (222)
.+.--+.+...|+++.|++.|+.
T Consensus 27 t~~Ii~aiv~rL~~~LP~~~Ve~ 49 (175)
T 2gjv_A 27 TLSVIHTVANRLRELNPDMDIHI 49 (175)
T ss_dssp HHHHHHHHHHHHHHHCTTEEEEC
T ss_pred HHHHHHHHHHHHHhHCCCceEEe
Confidence 56666788999999999998864
No 77
>3kgk_A Arsenical resistance operon trans-acting represso; alpha+beta, chaperone, DNA-binding, RE transcription, transcription regulation; 1.40A {Escherichia coli} PDB: 3mwh_A
Probab=49.13 E-value=17 Score=28.10 Aligned_cols=25 Identities=24% Similarity=0.489 Sum_probs=21.0
Q ss_pred EEEECCeEeEeeeccCCCCChhHHHHHHH
Q 027523 177 EVYCNDDLVFSKLKEGRFPGEIELKDLVA 205 (222)
Q Consensus 177 EV~vng~LV~SKl~~grfP~~~EL~~~I~ 205 (222)
-+.|||+++.+ ||+|+.+||.+.+.
T Consensus 75 ~~~VDGevv~~----G~yPt~eEl~~~lg 99 (110)
T 3kgk_A 75 LLLLDGETVMA----GRYPKRAELARWFG 99 (110)
T ss_dssp EEEETTEEEEE----SSCCCHHHHHHHHT
T ss_pred EEEECCEEEEe----ccCCCHHHHHHHhC
Confidence 35779999864 89999999998875
No 78
>4dve_A Biotin transporter BIOY; ECF-transport, ligand-binding domain, biotin binding, membra transport protein; HET: BTN BNG; 2.09A {Lactococcus lactis subsp}
Probab=48.97 E-value=3.8 Score=34.58 Aligned_cols=8 Identities=13% Similarity=0.409 Sum_probs=3.4
Q ss_pred hhcccccc
Q 027523 128 VAGEQIFP 135 (222)
Q Consensus 128 ~~G~~iF~ 135 (222)
..|-.+|.
T Consensus 79 ~~GlPVFa 86 (198)
T 4dve_A 79 LIGLPVLT 86 (198)
T ss_dssp HHTCCCBT
T ss_pred HHcCcccc
Confidence 33444443
No 79
>1d2d_A TRNA synthetase, tRNA ligase; tRNA synthetase (ligase), protein transcription; NMR {Cricetulus griseus} SCOP: a.16.1.3 PDB: 1r1b_A
Probab=48.77 E-value=7.6 Score=26.82 Aligned_cols=22 Identities=23% Similarity=0.209 Sum_probs=11.1
Q ss_pred hhhhhhccCCCCCCCCCCCCCCC
Q 027523 17 CSDLLNLFTPPPPPPPKSASHHH 39 (222)
Q Consensus 17 ~~d~~~~f~~~~~~~~~~~~~~~ 39 (222)
=+|+-.+ ++.+..|.+.|||||
T Consensus 37 K~~~~~~-tg~~~~p~~~~~~~~ 58 (59)
T 1d2d_A 37 KAEYKEK-TGKEYVPGLEHHHHH 58 (59)
T ss_dssp HHHHCSS-SSSSCCCSSCCCC--
T ss_pred HHHHHHH-hCCCCCCCccccccC
Confidence 3455555 556655655555544
No 80
>3llq_A Aquaporin Z 2; aquaporin tetramer, membrane protein, water channel, structu genomics, PSI-2, protein structure initiative; 2.01A {Agrobacterium tumefaciens str}
Probab=48.68 E-value=3.7 Score=35.84 Aligned_cols=8 Identities=50% Similarity=0.974 Sum_probs=0.0
Q ss_pred CCCCCCCC
Q 027523 34 SASHHHHK 41 (222)
Q Consensus 34 ~~~~~~~~ 41 (222)
+|||||||
T Consensus 10 ~~~~~~~~ 17 (256)
T 3llq_A 10 HHHHHHHH 17 (256)
T ss_dssp --------
T ss_pred cccccccc
Confidence 33333333
No 81
>3ktb_A Arsenical resistance operon trans-acting represso; alpha-beta-alpha sandwich, helix-turn-helix, structural GENO PSI-2; 2.10A {Bacteroides vulgatus}
Probab=48.44 E-value=17 Score=28.03 Aligned_cols=24 Identities=4% Similarity=0.284 Sum_probs=20.2
Q ss_pred EEEECCeEeEeeeccCCCCChhHHHHHH
Q 027523 177 EVYCNDDLVFSKLKEGRFPGEIELKDLV 204 (222)
Q Consensus 177 EV~vng~LV~SKl~~grfP~~~EL~~~I 204 (222)
-+.+||+++. +||+|+.+||.+.+
T Consensus 78 ~~~VDGevv~----~G~yPt~eEl~~~l 101 (106)
T 3ktb_A 78 ITLVDGEIAV----SQTYPTTKQMSEWT 101 (106)
T ss_dssp EEEETTEEEE----CSSCCCHHHHHHHH
T ss_pred EEEECCEEEE----eccCCCHHHHHHHh
Confidence 3577999986 59999999999876
No 82
>3mx7_A FAS apoptotic inhibitory molecule 1; beta sheet, apoptosis; 1.76A {Homo sapiens}
Probab=48.38 E-value=13 Score=27.98 Aligned_cols=19 Identities=26% Similarity=0.242 Sum_probs=17.1
Q ss_pred cCCCcEEEEEECCeEeEee
Q 027523 170 LQSSGAFEVYCNDDLVFSK 188 (222)
Q Consensus 170 l~stGaFEV~vng~LV~SK 188 (222)
-.++|...|++||+.||.|
T Consensus 24 gtttGkrvi~VDGkev~r~ 42 (90)
T 3mx7_A 24 GTTSGKRVVYVDGKEEIRK 42 (90)
T ss_dssp CTTTCCEEEEETTEEEEEE
T ss_pred ccccceEEEEECCEEEEec
Confidence 3479999999999999988
No 83
>3l9v_A Putative thiol-disulfide isomerase or thioredoxin; thioredoxin-fold, SRGA, thiol-disulfide oxidoreductase, ISOM oxidoreductase; HET: PE8 P4C P6G; 2.15A {Salmonella enterica subsp} SCOP: c.47.1.0
Probab=46.99 E-value=1e+02 Score=24.10 Aligned_cols=143 Identities=13% Similarity=0.070 Sum_probs=75.4
Q ss_pred ccEEEEEecCCCCchhhHHHH---HHHHHHhCCC-ceeecccCCC-ChHHHHHHhhhhHHHHH--------HHH-HHhhc
Q 027523 65 GSTVNINFCASCSYRGTAITM---KRMLETQFPG-IDVVLANYPP-PLPKRLLAKVVPAVQIG--------VIG-IVVAG 130 (222)
Q Consensus 65 g~tV~i~YC~sCgY~~~f~~l---k~~L~~~yP~-i~V~G~nYPp-p~~k~~Lak~v~~~q~~--------~i~-~i~~G 130 (222)
.++|...|-..|+|=+.|+.. .+.++++||+ ++++--++|. .+.-...|++.-.++.. .+. .++..
T Consensus 15 ~~~vvef~d~~Cp~C~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~s~~aa~a~~aA~~~g~~~~~~~~lf~a~~~~ 94 (189)
T 3l9v_A 15 APAVVEFFSFYCPPCYAFSQTMGVDQAIRHVLPQGSRMVKYHVSLLGPLGHELTRAWALAMVMKETDVIEKAFFTAGMVE 94 (189)
T ss_dssp CCSEEEEECTTCHHHHHHHHTSCHHHHHHTTCCTTCCEEEEECSSSSTTHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTT
T ss_pred CCEEEEEECCCChhHHHHhHhccchHHHHHhCCCCCEEEEEechhcccccHHHHHHHHHHHHcCcHHHHHHHHHHHHhhh
Confidence 467888889999999999875 3688899995 7777777776 44444555543333221 111 22211
Q ss_pred c---------cccccc-CCCChhhHhhhhcchhhHHHHHHHHHHhhhhccCCCcEEEEEECCeEeEeeeccCCCCCh---
Q 027523 131 E---------QIFPML-GMTPPPWYYSLRANRFGSIASTWLIGNFLQSFLQSSGAFEVYCNDDLVFSKLKEGRFPGE--- 197 (222)
Q Consensus 131 ~---------~iF~~l-G~~~P~w~~~~~~NK~~~~~~~~~~~n~l~~~l~stGaFEV~vng~LV~SKl~~grfP~~--- 197 (222)
. .+...+ |+....+...+........+..-. -.....+-+|.=-+.+||+.+-+ .+...+.
T Consensus 95 ~~~~~~~~l~~~a~~~~Gld~~~~~~~~~s~~~~~~v~~~~---~~a~~~gv~GtPt~~vng~~~v~---~~~~~~~~~~ 168 (189)
T 3l9v_A 95 KRLHSPDDVRRVFMSATGISRGEYDRSIKSPAVNDMVALQE---RLFKEYGVRGTPSVYVRGRYHIN---NAAFGAFSVE 168 (189)
T ss_dssp CCCCSHHHHHHHHHHHHCCCHHHHHHHTTSHHHHHHHHHHH---HHHHHTTCCSSSEEEETTTEEEC---GGGCCCSSHH
T ss_pred ccCCCHHHHHHHHHHccCCCHHHHHHHHhhHHHHHHHHHHH---HHHHHhCCCccCEEEECCEEEEC---cccccccccc
Confidence 1 123334 665444444443333322211111 11122333444444559986443 2334444
Q ss_pred ---hHHHHHHHHHhcCCCC
Q 027523 198 ---IELKDLVAKQLASSRL 213 (222)
Q Consensus 198 ---~EL~~~I~~~l~~~~~ 213 (222)
+++.++|+..+...++
T Consensus 169 ~~~~~~~~~i~~Li~k~~~ 187 (189)
T 3l9v_A 169 NFRSRYAAVVRKLLAGNPD 187 (189)
T ss_dssp HHHHHHHHHHHHHHCC---
T ss_pred chHHHHHHHHHHHHhCCCC
Confidence 8899999988865543
No 84
>3noy_A 4-hydroxy-3-methylbut-2-EN-1-YL diphosphate synth; iron-sulfur protein, non-mevalonate pathway, terpene biosynt isoprenoid biosynthesis; 2.70A {Aquifex aeolicus}
Probab=46.93 E-value=4.3 Score=37.61 Aligned_cols=90 Identities=17% Similarity=0.234 Sum_probs=55.8
Q ss_pred EEEEEecCCCC-chhhHHHHHHHHHHhCCCceeecccCCCChHHHHHHhhhhHHHHHHHHHHhhccc--cccccCCCChh
Q 027523 67 TVNINFCASCS-YRGTAITMKRMLETQFPGIDVVLANYPPPLPKRLLAKVVPAVQIGVIGIVVAGEQ--IFPMLGMTPPP 143 (222)
Q Consensus 67 tV~i~YC~sCg-Y~~~f~~lk~~L~~~yP~i~V~G~nYPpp~~k~~Lak~v~~~q~~~i~~i~~G~~--iF~~lG~~~P~ 143 (222)
.++|--|-+|| ..-..+++.+.++++.-++.. + +++++|++++-|-- =-.-+|+
T Consensus 268 g~~~ISCPtCGRt~~dl~~~~~~ie~~l~~~~~-~------------------lkVAVMGCvVNGPGEa~~ADiGi---- 324 (366)
T 3noy_A 268 GVEIVACPTCGRIEVDLPKVVKEVQEKLSGVKT-P------------------LKVAVMGCVVNAIGEAREADIGL---- 324 (366)
T ss_dssp SCEEEECCCCTTCCSCHHHHHHHHHHHTTTCCS-C------------------CEEEEESSSHHHHHHTTTCSEEE----
T ss_pred CCEEEECCCCCCccccHHHHHHHHHHHHhCCCC-C------------------CEEEEEcccccCCchhhhCCEeE----
Confidence 45888999999 333557778888887655431 0 23455667766432 1111222
Q ss_pred hHhhhhcchhhHHHHHHHHHHhhhhccCCCcEEEEEECCeEeEeeeccCCCCChhHHHHHHHHHh
Q 027523 144 WYYSLRANRFGSIASTWLIGNFLQSFLQSSGAFEVYCNDDLVFSKLKEGRFPGEIELKDLVAKQL 208 (222)
Q Consensus 144 w~~~~~~NK~~~~~~~~~~~n~l~~~l~stGaFEV~vng~LV~SKl~~grfP~~~EL~~~I~~~l 208 (222)
.+..|..-+|.+|+.|- |+.+.. =.++|++.|++..
T Consensus 325 --------------------------agg~~~~~lf~~Ge~v~-~v~~~~--~~~~l~~~I~~~~ 360 (366)
T 3noy_A 325 --------------------------ACGRGFAWLFKHGKPIK-KVDESE--MVDELLKEIQNME 360 (366)
T ss_dssp --------------------------EECSSEEEEEETTEEEE-EEESCH--HHHHHHHHHHC--
T ss_pred --------------------------ecCCCceEEEECCEEee-ecCHHH--HHHHHHHHHHHHH
Confidence 23578999999999987 666544 3567777777664
No 85
>2xci_A KDO-transferase, 3-deoxy-D-manno-2-octulosonic acid transferase; KDTA, GSEA, glycosyltransferase superfamily B,; HET: PG4; 2.00A {Aquifex aeolicus} PDB: 2xcu_A*
Probab=46.54 E-value=10 Score=33.19 Aligned_cols=28 Identities=18% Similarity=0.067 Sum_probs=19.5
Q ss_pred EEecCCCCchhhHHHHHHHHHHhCCCcee
Q 027523 70 INFCASCSYRGTAITMKRMLETQFPGIDV 98 (222)
Q Consensus 70 i~YC~sCgY~~~f~~lk~~L~~~yP~i~V 98 (222)
...|.|-|-......+.+.|.+++ ++.+
T Consensus 44 wih~~s~G~~~~~~~L~~~L~~~~-~v~v 71 (374)
T 2xci_A 44 WVHTASIGEFNTFLPILKELKREH-RILL 71 (374)
T ss_dssp EEECSSHHHHHHHHHHHHHHHHHS-CEEE
T ss_pred EEEcCCHHHHHHHHHHHHHHHhcC-CEEE
Confidence 456667776667778888888877 5543
No 86
>1d1d_A Protein (capsid protein); two independent domains helical bundles, virus/viral protein; NMR {Rous sarcoma virus} SCOP: a.28.3.1 a.73.1.1
Probab=46.36 E-value=4.2 Score=35.94 Aligned_cols=45 Identities=9% Similarity=-0.015 Sum_probs=27.9
Q ss_pred hhhHHHHHHHHHHhCCC---ce--eec-ccC--CCChHHHHHHhhhhHHHHHH
Q 027523 79 RGTAITMKRMLETQFPG---ID--VVL-ANY--PPPLPKRLLAKVVPAVQIGV 123 (222)
Q Consensus 79 ~~~f~~lk~~L~~~yP~---i~--V~G-~nY--Ppp~~k~~Lak~v~~~q~~~ 123 (222)
-+...++++.++++=|. +. ++. .+. .|.=|+.+|--+++-.|.++
T Consensus 38 pr~l~~~~k~ve~~g~~sPe~i~~f~ALse~~~TP~D~~~ml~avlgg~q~a~ 90 (262)
T 1d1d_A 38 PKLITRLADTVRTKGLRSPITMAEVEALMSSPLLPHDVTNLMRVILGPAPYAL 90 (262)
T ss_dssp HHHHHHHHHHHHHHCTTSSHHHHHHHHHHTSCCCHHHHHHHHHHHSCHHHHHH
T ss_pred HHHHHHHHHHHHHcCCCChHHHHHHHHHHcCCCChHHHHHHHHHHcChHHHHH
Confidence 34788889999988543 31 221 233 35556766666667777775
No 87
>4faj_A PRGZ; substrate binding protein, peptide binding protein, pheromon extracellular, membrane anchored; 1.90A {Enterococcus faecalis}
Probab=45.99 E-value=4.3 Score=37.47 Aligned_cols=123 Identities=13% Similarity=0.137 Sum_probs=45.5
Q ss_pred cCCCCchhhHHHHHHHHHHhCCCceeecccCCCChHHHHHHhhhhHHHHHHHHHHhhccccccccCCCChhhHhhhhcch
Q 027523 73 CASCSYRGTAITMKRMLETQFPGIDVVLANYPPPLPKRLLAKVVPAVQIGVIGIVVAGEQIFPMLGMTPPPWYYSLRANR 152 (222)
Q Consensus 73 C~sCgY~~~f~~lk~~L~~~yP~i~V~G~nYPpp~~k~~Lak~v~~~q~~~i~~i~~G~~iF~~lG~~~P~w~~~~~~NK 152 (222)
-.|||...+-.+-+..-+.+.-.+..--+.-|..-.- -|..+.--.+.+++-++-|-.-...-+-++|.... -+.|
T Consensus 38 lascgtntatkdsqdatekkveqvatltagtpvqsld--patavdqtsitllanvmeglyrldeknqpqpaiaa--gqpk 113 (564)
T 4faj_A 38 LASCGTNTATKDSQDATEKKVEQVATLTAGTPVQSLD--PATAVDQTSITLLANVMEGLYRLDEKNQPQPAIAA--GQPK 113 (564)
T ss_dssp --------------------CCCEEEEEESSCCCCSC--TTTCCBHHHHHHHHHHCCCSEEECTTSCEEESSBS--SSCE
T ss_pred HHhcCCCcccccchhhHHHHHHHhheecCCCcccccC--cccccchhhHHHHHHHHHHHhhccccCCCCccccc--CCcc
Confidence 3589987777777777777766653211111111000 02233334455555555553211112222333211 1111
Q ss_pred hhHHHHHHHHHHhhhhccCCCcEEEEEECCeEeEeeeccCCCCChhHHHHHHHHHhcCCCCCCCcC
Q 027523 153 FGSIASTWLIGNFLQSFLQSSGAFEVYCNDDLVFSKLKEGRFPGEIELKDLVAKQLASSRLVDGVG 218 (222)
Q Consensus 153 ~~~~~~~~~~~n~l~~~l~stGaFEV~vng~LV~SKl~~grfP~~~EL~~~I~~~l~~~~~~~~~~ 218 (222)
. ...+-.|.|.+-|---|| +|.--+..+.+..-.+.++|..---+|+
T Consensus 114 v----------------snngktytivirdgakws---dgtqitasdfvaawqrvvdpktvspnve 160 (564)
T 4faj_A 114 V----------------SNNGKTYTIVIRDGAKWS---DGTQITASDFVAAWQRVVDPKTVSPNVE 160 (564)
T ss_dssp E----------------ETTTTEEEEEBCTTCBCT---TSCBCCHHHHHHHHHHHHCGGGCCTTGG
T ss_pred c----------------cCCCceEEEEEecCCccc---CCcEeeHHHHHHHHHhhcCcccCCccHH
Confidence 1 113456777666655565 5666677778777777777655444443
No 88
>2lie_A CCL2 lectin; sugar binding protein; NMR {Coprinopsis cinerea} PDB: 2liq_A*
Probab=51.68 E-value=4.3 Score=33.07 Aligned_cols=12 Identities=17% Similarity=0.357 Sum_probs=5.3
Q ss_pred CcEEEEEECCeE
Q 027523 173 SGAFEVYCNDDL 184 (222)
Q Consensus 173 tGaFEV~vng~L 184 (222)
.|-|.|.=.|+-
T Consensus 111 ~g~Y~IQdgg~t 122 (153)
T 2lie_A 111 SGGYNIQDGKRT 122 (153)
Confidence 355555433333
No 89
>2es4_D Lipase chaperone; protein-protein complex, steric chaperone, triacylglycerol hydrolase, all alpha helix protein, A/B hydrolase fold; 1.85A {Burkholderia glumae} SCOP: a.137.15.1
Probab=45.75 E-value=4.3 Score=36.74 Aligned_cols=12 Identities=17% Similarity=0.343 Sum_probs=7.0
Q ss_pred HHHHHHHHHhCC
Q 027523 83 ITMKRMLETQFP 94 (222)
Q Consensus 83 ~~lk~~L~~~yP 94 (222)
..++.+|.+++|
T Consensus 106 ~~v~~~i~~~lp 117 (332)
T 2es4_D 106 ALVRREIAAQLD 117 (332)
T ss_dssp HHHHHHHHHHHS
T ss_pred HHHHHHHHHhCC
Confidence 445556666666
No 90
>2kgr_A Intersectin-1; structure, alternative splicing, calcium, cell junction, cell projection, coiled coil, endocytosis, membrane, phosphoprotein; NMR {Homo sapiens}
Probab=45.13 E-value=13 Score=27.13 Aligned_cols=6 Identities=17% Similarity=0.296 Sum_probs=2.3
Q ss_pred ccCCCC
Q 027523 23 LFTPPP 28 (222)
Q Consensus 23 ~f~~~~ 28 (222)
|+.|+.
T Consensus 94 l~pps~ 99 (111)
T 2kgr_A 94 YIPPSF 99 (111)
T ss_dssp GSCTTT
T ss_pred cCCCcc
Confidence 333333
No 91
>3gyk_A 27KDA outer membrane protein; APC61738.2, silicibacter pomeroyi DSS-3, thioredoxin-like, oxidoreductase, structural genomics, PSI-2; HET: MSE; 1.76A {Silicibacter pomeroyi}
Probab=45.12 E-value=95 Score=23.27 Aligned_cols=41 Identities=24% Similarity=0.294 Sum_probs=32.0
Q ss_pred cEEEEEecCCCCchhhHHHHHHHHHHhCCCceeecccCCCC
Q 027523 66 STVNINFCASCSYRGTAITMKRMLETQFPGIDVVLANYPPP 106 (222)
Q Consensus 66 ~tV~i~YC~sCgY~~~f~~lk~~L~~~yP~i~V~G~nYPpp 106 (222)
.+|...+-..|.|=..+...-+.+.+++|+++++--++|..
T Consensus 24 v~i~~f~d~~Cp~C~~~~~~l~~l~~~~~~v~~~~~~~p~~ 64 (175)
T 3gyk_A 24 VTVVEFFDYNCPYCRRAMAEVQGLVDADPNVRLVYREWPIL 64 (175)
T ss_dssp EEEEEEECTTCHHHHHHHHHHHHHHHHCTTEEEEEEECCCS
T ss_pred EEEEEEECCCCccHHHHHHHHHHHHHhCCCEEEEEEeCCCC
Confidence 47777777888888888776666777799988887778765
No 92
>2q58_A Fragment, farnesyl pyrophosphate synthase; farnesyl diphosphate synthase, structural genomics, structur genomics consortium, SGC; HET: ZOL; 2.37A {Cryptosporidium parvum} PDB: 2o1o_A*
Probab=44.70 E-value=24 Score=31.84 Aligned_cols=20 Identities=5% Similarity=0.041 Sum_probs=13.5
Q ss_pred CchhhHHHHHHHHHHhCCCc
Q 027523 77 SYRGTAITMKRMLETQFPGI 96 (222)
Q Consensus 77 gY~~~f~~lk~~L~~~yP~i 96 (222)
.+.+.|++++..+++...++
T Consensus 27 df~~~~~~~~~~~~~~l~~~ 46 (368)
T 2q58_A 27 DFINYYDKFKVIVYNVLKKL 46 (368)
T ss_dssp TGGGTHHHHHHHHHTTCCCC
T ss_pred HHHHHHHHHHHHHHHHHhcc
Confidence 46667778777777766543
No 93
>2qj6_A Toxin A; clostridial repetitive oligo peptides; 2.50A {Clostridium difficile}
Probab=44.28 E-value=4.7 Score=35.86 Aligned_cols=8 Identities=50% Similarity=0.974 Sum_probs=0.0
Q ss_pred CCCCCCCC
Q 027523 34 SASHHHHK 41 (222)
Q Consensus 34 ~~~~~~~~ 41 (222)
+|||||||
T Consensus 5 ~~~~~~~~ 12 (332)
T 2qj6_A 5 HHHHHHHH 12 (332)
T ss_dssp --------
T ss_pred cccccccc
Confidence 33444443
No 94
>2zzj_A Glucuronan lyase A; beta-jelly roll; HET: CIT; 1.80A {Trichoderma reesei}
Probab=43.77 E-value=17 Score=31.71 Aligned_cols=23 Identities=13% Similarity=0.335 Sum_probs=19.7
Q ss_pred CCcEEEEEECCeEeEeeeccCCC
Q 027523 172 SSGAFEVYCNDDLVFSKLKEGRF 194 (222)
Q Consensus 172 stGaFEV~vng~LV~SKl~~grf 194 (222)
++|.|||++||++|+++..-..+
T Consensus 164 ~~Gf~~vW~dG~~v~~~~g~~t~ 186 (238)
T 2zzj_A 164 NTGYFKIWFDGAKVHEEYNVATT 186 (238)
T ss_dssp TTEEEEEEETTEEEEEEEEECCS
T ss_pred CCcEEEEEECCEEEEeecCccee
Confidence 79999999999999998874443
No 95
>3gmf_A Protein-disulfide isomerase; oxidoreductase, PSI-2, NYSGXRC, structu genomics, protein structure initiative; 1.76A {Novosphingobium aromaticivorans}
Probab=43.74 E-value=1.3e+02 Score=24.33 Aligned_cols=47 Identities=6% Similarity=-0.079 Sum_probs=34.7
Q ss_pred ccEEEEEecCCCCchhhHH-HHHHHHHHhC---CCceeecccCCCChHHHH
Q 027523 65 GSTVNINFCASCSYRGTAI-TMKRMLETQF---PGIDVVLANYPPPLPKRL 111 (222)
Q Consensus 65 g~tV~i~YC~sCgY~~~f~-~lk~~L~~~y---P~i~V~G~nYPpp~~k~~ 111 (222)
-.||....-..|.|=++|. ++...|+++| +.++++--+||..+.-..
T Consensus 16 ~vtivef~D~~Cp~C~~~~~~~~~~l~~~~i~~g~v~~v~r~~pl~~~s~~ 66 (205)
T 3gmf_A 16 KLRLVEFVSYTCPHCSHFEIESEGQLKIGMVQPGKGAIEVRNFVRDPIDMT 66 (205)
T ss_dssp SEEEEEEECTTCHHHHHHHHHHHHHHHHHTTTTTSEEEEEEECCCSHHHHH
T ss_pred CeEEEEEECCCCHHHHHHHHHHHHHHHHHhccCCeEEEEEEeCCCCcchHH
Confidence 3477778888899888887 5778888788 447787778887665433
No 96
>1xhj_A Nitrogen fixation protein NIFU; alpha-beta, NIFU-like, structural genomics, protein structur initiative, NESG, PSI; NMR {Staphylococcus epidermidis} SCOP: d.52.8.1
Probab=43.65 E-value=36 Score=25.13 Aligned_cols=33 Identities=21% Similarity=0.578 Sum_probs=22.8
Q ss_pred ccEEEEEe---cCCCCchhhH--HHHHHHHHHhCCCce
Q 027523 65 GSTVNINF---CASCSYRGTA--ITMKRMLETQFPGID 97 (222)
Q Consensus 65 g~tV~i~Y---C~sCgY~~~f--~~lk~~L~~~yP~i~ 97 (222)
+.+|.+.+ |.+|.....= .-+++.|+++.|++.
T Consensus 37 ~g~V~V~L~GaC~gCpss~~TLk~gIE~~L~~~vPev~ 74 (88)
T 1xhj_A 37 DGIVKLQLHGACGTCPSSTITLKAGIERALHEEVPGVI 74 (88)
T ss_dssp SSEEEEEEESSCCSSCHHHHHHHHHHHHHHHHHSTTCC
T ss_pred CCEEEEEEeecCCCCcchHHHHHHHHHHHHHHhCCCce
Confidence 46788887 7777644432 235678888899984
No 97
>2x7m_A Archaemetzincin; metalloprotease, protease, hydrolase, metal-bindi; 1.50A {Methanopyrus kandleri}
Probab=43.64 E-value=23 Score=29.61 Aligned_cols=42 Identities=5% Similarity=-0.092 Sum_probs=26.0
Q ss_pred CccEEEEEecCCCCchh---hHHHHHHHHHHhCCCceeecccCCCC
Q 027523 64 YGSTVNINFCASCSYRG---TAITMKRMLETQFPGIDVVLANYPPP 106 (222)
Q Consensus 64 ~g~tV~i~YC~sCgY~~---~f~~lk~~L~~~yP~i~V~G~nYPpp 106 (222)
.+-.|.|.+=. -++.. ..+.+++.|++.|.++.|+-...+.|
T Consensus 19 ~~m~I~I~pi~-g~~~~~~~~l~~l~~~l~~~f~~l~V~~~~~~~p 63 (195)
T 2x7m_A 19 SHMKLCLVAFD-GRIPMLSSIVDRFEEHVSEYLGEVKVKKKRAKLP 63 (195)
T ss_dssp CSCEEEEEESS-SCCTTHHHHHHHHHHHHHHHHCSCEEEEEECCCC
T ss_pred cceEEEEEEeC-CCCCcHHHHHHHHHHHHHHHhCCceEEEecCCCC
Confidence 33446666551 23443 66889999999999876654323333
No 98
>2j6v_A UV endonuclease, UVDE; plasmid, TIM barrel, DNA repair, DNA binding protein, lyase; HET: KCX ALY; 1.55A {Thermus thermophilus} PDB: 3bzg_A 3c0s_A* 3c0l_A 3c0q_A* 3bzj_A
Probab=43.03 E-value=7.8 Score=33.91 Aligned_cols=12 Identities=17% Similarity=0.265 Sum_probs=5.8
Q ss_pred hhHHHHHHHHHH
Q 027523 80 GTAITMKRMLET 91 (222)
Q Consensus 80 ~~f~~lk~~L~~ 91 (222)
.+.+.+.+.|+-
T Consensus 58 ~nl~~l~~~l~~ 69 (301)
T 2j6v_A 58 ENLRDLERILRF 69 (301)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 344555555543
No 99
>3ixr_A Bacterioferritin comigratory protein; alpha beta protein, oxidoreductase; 1.60A {Xylella fastidiosa}
Probab=42.97 E-value=18 Score=28.07 Aligned_cols=35 Identities=9% Similarity=-0.084 Sum_probs=21.8
Q ss_pred cEEEEEECCeEeEeeeccCCCCChhHHHHHHHHHh
Q 027523 174 GAFEVYCNDDLVFSKLKEGRFPGEIELKDLVAKQL 208 (222)
Q Consensus 174 GaFEV~vng~LV~SKl~~grfP~~~EL~~~I~~~l 208 (222)
..|-|-=||++++.--....-++.+|+++.|++..
T Consensus 143 ~~~lID~~G~I~~~~~~~~~~~~~~~il~~l~~l~ 177 (179)
T 3ixr_A 143 STFLIGPTHRIVEAWRQVKVPGHAEEVLNKLKAHA 177 (179)
T ss_dssp EEEEECTTSBEEEEECSCCSTTHHHHHHHHHHHHH
T ss_pred EEEEECCCCEEEEEEcCCCCCCCHHHHHHHHHHHh
Confidence 35666557999876632233346677888777643
No 100
>3gn3_A Putative protein-disulfide isomerase; MCSG, PSI, structural GEN protein structure initiative, midwest center for structural genomics; 2.50A {Pseudomonas syringae PV}
Probab=42.95 E-value=20 Score=28.68 Aligned_cols=54 Identities=13% Similarity=0.319 Sum_probs=33.4
Q ss_pred CCcc-EEEEEecCCCCchhhH-HHHHHHHHHhCCC-ceeecccCCCC--hHHHHHHhhh
Q 027523 63 GYGS-TVNINFCASCSYRGTA-ITMKRMLETQFPG-IDVVLANYPPP--LPKRLLAKVV 116 (222)
Q Consensus 63 ~~g~-tV~i~YC~sCgY~~~f-~~lk~~L~~~yP~-i~V~G~nYPpp--~~k~~Lak~v 116 (222)
|.++ ||.+..-..|.|=++| .++.+.|++.||+ ++++--++|.+ +.-..++++.
T Consensus 12 g~a~vtiv~f~D~~Cp~C~~~~~~~~~~l~~~~~g~v~~v~r~~p~~~h~~s~~aaraa 70 (182)
T 3gn3_A 12 GHGPRLFEVFLEPTCPFSVKAFFKLDDLLAQAGEDNVTVRIRLQSQPWHMFSGVIVRCI 70 (182)
T ss_dssp ECCSEEEEEEECTTCHHHHHHHTTHHHHHHHHCTTTEEEEEEECCCTTSTTHHHHHHHH
T ss_pred CCCCEEEEEEECCCCHhHHHHHHHHHHHHHHhCCCCEEEEEEEcCCCCCccHHHHHHHH
Confidence 3444 4555556677766654 6677778776785 78887888864 3334444443
No 101
>4g2c_A DYP2; DYE peroxidase, oxidoreductase; HET: HEM; 2.25A {Amycolatopsis SP}
Probab=42.92 E-value=5.1 Score=38.21 Aligned_cols=45 Identities=16% Similarity=0.173 Sum_probs=25.6
Q ss_pred cCCCCchhhHHHHHHHHHHhCCCce----------eecccCCCChHHHHHHhhhh
Q 027523 73 CASCSYRGTAITMKRMLETQFPGID----------VVLANYPPPLPKRLLAKVVP 117 (222)
Q Consensus 73 C~sCgY~~~f~~lk~~L~~~yP~i~----------V~G~nYPpp~~k~~Lak~v~ 117 (222)
-.+-+|+.+-.+-..+|.+-=.+|- +-..--.+...|+.|.+++.
T Consensus 35 ~~~~~~~~a~~~~~~~L~dIQG~IL~g~~k~~~~~lFf~i~Da~~~R~~L~~l~~ 89 (493)
T 4g2c_A 35 STTLSWKSATGEAATMLDELQPNILKAHVRDRLTVLFLGFGDAAEARTFLNGLSG 89 (493)
T ss_dssp TSCBCTTTCCHHHHHHHHHSCTTSSSCCCCSEEEEEEEEESCHHHHHHHHHHHHT
T ss_pred cCcccccccCCccccchhhcchhhhcCCCCceeEEEEEEecCHHHHHHHHHHhhh
Confidence 4556788887777777766533321 11111245567777777654
No 102
>1tjn_A Sirohydrochlorin cobaltochelatase; AF0721, APC5049, midwest consortium for structural genomics, structure initiative, A. fulgidus; 2.01A {Archaeoglobus fulgidus} SCOP: c.92.1.3
Probab=42.53 E-value=56 Score=25.47 Aligned_cols=37 Identities=16% Similarity=0.170 Sum_probs=26.8
Q ss_pred hhhHHHHHHHHHHhCCCceee-c-ccC-CCChHHHHHHhh
Q 027523 79 RGTAITMKRMLETQFPGIDVV-L-ANY-PPPLPKRLLAKV 115 (222)
Q Consensus 79 ~~~f~~lk~~L~~~yP~i~V~-G-~nY-Ppp~~k~~Lak~ 115 (222)
...+.++.+.|+++.|+..|+ + -.| -.|.....+.++
T Consensus 40 ~~~~~~la~~l~~~~~~~~V~~afle~~~~Psl~~~l~~l 79 (156)
T 1tjn_A 40 REVMELHRKRIEESGAFDEVKIAFAARKRRPMPDEAIREM 79 (156)
T ss_dssp HHHHHHHHHHHHHHTSSSEEEEEECSSSCSSCHHHHHHHC
T ss_pred HHHHHHHHHHHHhhCCCCeEEEEEecCCCCCCHHHHHHHc
Confidence 456889999999999887664 3 455 566667777665
No 103
>2ew1_A RAS-related protein RAB-30; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=42.29 E-value=6.6 Score=31.11 Aligned_cols=13 Identities=23% Similarity=-0.084 Sum_probs=7.3
Q ss_pred ChhHHHHHHHHHh
Q 027523 196 GEIELKDLVAKQL 208 (222)
Q Consensus 196 ~~~EL~~~I~~~l 208 (222)
..+|+++.|.+.+
T Consensus 175 gv~~l~~~l~~~i 187 (201)
T 2ew1_A 175 NVEKLFLDLACRL 187 (201)
T ss_dssp THHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHH
Confidence 4566666555444
No 104
>2qu8_A Putative nucleolar GTP-binding protein 1; GTPase, malaria, structural genomics, structural genomics consortium, SGC, unknown function; HET: GDP; 2.01A {Plasmodium falciparum}
Probab=42.23 E-value=8.4 Score=30.73 Aligned_cols=13 Identities=23% Similarity=0.125 Sum_probs=6.2
Q ss_pred ChhHHHHHHHHHh
Q 027523 196 GEIELKDLVAKQL 208 (222)
Q Consensus 196 ~~~EL~~~I~~~l 208 (222)
..+|+++.|.+.+
T Consensus 191 gi~~l~~~l~~~i 203 (228)
T 2qu8_A 191 GVEQAKITACELL 203 (228)
T ss_dssp THHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHH
Confidence 3455555544433
No 105
>4axs_A Carbamate kinase; oxidoreductase; 2.50A {Mycoplasma penetrans}
Probab=41.84 E-value=5.4 Score=35.94 Aligned_cols=13 Identities=8% Similarity=0.243 Sum_probs=6.4
Q ss_pred hHHHHHHHHHHhC
Q 027523 81 TAITMKRMLETQF 93 (222)
Q Consensus 81 ~f~~lk~~L~~~y 93 (222)
...++..+.++-+
T Consensus 50 ~a~~Ia~L~~~G~ 62 (332)
T 4axs_A 50 PAAKIAALIQEGH 62 (332)
T ss_dssp HHHHHHHHHHTTC
T ss_pred HHHHHHHHHHCCC
Confidence 3455555555544
No 106
>3gha_A Disulfide bond formation protein D; BDBD, DSBA-like, TRX-like, oxidoreductase, competence, redox-active center; 1.40A {Bacillus subtilis} PDB: 3eu4_A 3gh9_A 3eu3_A
Probab=41.65 E-value=1.3e+02 Score=23.91 Aligned_cols=49 Identities=12% Similarity=-0.052 Sum_probs=35.6
Q ss_pred ccccCCccEEEEEecCCCCchhhHHH-HHHHHHHhCC---CceeecccCCCCh
Q 027523 59 VGGIGYGSTVNINFCASCSYRGTAIT-MKRMLETQFP---GIDVVLANYPPPL 107 (222)
Q Consensus 59 ~~~~~~g~tV~i~YC~sCgY~~~f~~-lk~~L~~~yP---~i~V~G~nYPpp~ 107 (222)
.|....-.||...+-..|.|=+.|++ +...|+++|+ +++++--++|...
T Consensus 24 ~G~~~a~vtvvef~D~~CP~C~~~~~~~~~~l~~~~~~~g~v~~~~~~~p~~~ 76 (202)
T 3gha_A 24 LGKDDAPVTVVEFGDYKCPSCKVFNSDIFPKIQKDFIDKGDVKFSFVNVMFHG 76 (202)
T ss_dssp ESCTTCSEEEEEEECTTCHHHHHHHHHTHHHHHHHTTTTTSEEEEEEECCCSH
T ss_pred ecCCCCCEEEEEEECCCChhHHHHHHHhhHHHHHHhccCCeEEEEEEecCccc
Confidence 34434445888888899999888875 4688888995 4677777777653
No 107
>2haq_A Cyclophilin; rotamase, proline, isomerase, CIS-trans, protozoa, KAla-AZAR.; 1.97A {Leishmania donovani} PDB: 3eov_A* 3bt8_A
Probab=41.64 E-value=25 Score=28.69 Aligned_cols=29 Identities=10% Similarity=0.038 Sum_probs=17.2
Q ss_pred ccccCCccEEEEEecCCCCchhhHHHHHHHH
Q 027523 59 VGGIGYGSTVNINFCASCSYRGTAITMKRML 89 (222)
Q Consensus 59 ~~~~~~g~tV~i~YC~sCgY~~~f~~lk~~L 89 (222)
+++...|.-+--+|+..| -++.+.+.++.
T Consensus 20 i~~t~~G~i~ieL~~~~a--P~t~~NF~~L~ 48 (172)
T 2haq_A 20 IDSEPLGRITIGLFGKDA--PLTTENFRQLC 48 (172)
T ss_dssp ETTEEEEEEEEEECTTTC--HHHHHHHHHHH
T ss_pred ECCEecceEEEEEeCCCC--cHHHHHHHHHh
Confidence 344456655555677666 55666666666
No 108
>3kg0_A Snoab; polyketide, anthracycline, oxygenase, cofactor-independent, oxidoreductase; 1.70A {Streptomyces nogalater} PDB: 3kg1_A 3kng_A
Probab=41.55 E-value=28 Score=26.63 Aligned_cols=33 Identities=12% Similarity=0.011 Sum_probs=22.5
Q ss_pred CCccEEEEEecCCCCchhhHHHHHHHH---HHhCCCc
Q 027523 63 GYGSTVNINFCASCSYRGTAITMKRML---ETQFPGI 96 (222)
Q Consensus 63 ~~g~tV~i~YC~sCgY~~~f~~lk~~L---~~~yP~i 96 (222)
+...++...+-+.-| ...|++.-+.+ ..+.||.
T Consensus 21 ~~mi~via~~~V~pg-~~~f~~~~~~~~~~~~~~pGf 56 (128)
T 3kg0_A 21 ADEVTFVNRFTVHGA-PAEFESVFARTAAFFARQPGF 56 (128)
T ss_dssp CCCEEEEEEEEECSC-HHHHHHHHHHHHHHHHTSTTE
T ss_pred CCcEEEEEEEEeCCC-HHHHHHHHHHHHHHHhcCCCc
Confidence 445677777788888 88887764433 3568997
No 109
>2d2a_A SUFA protein; iron-sulfur cluster, iron, ISCA, YADR, metal transport; 2.70A {Escherichia coli}
Probab=41.41 E-value=18 Score=28.74 Aligned_cols=16 Identities=19% Similarity=0.291 Sum_probs=12.9
Q ss_pred hhhHHHHHHHHHHhCC
Q 027523 79 RGTAITMKRMLETQFP 94 (222)
Q Consensus 79 ~~~f~~lk~~L~~~yP 94 (222)
..+..+++++++++-+
T Consensus 45 e~Aa~~lk~ll~~~~~ 60 (145)
T 2d2a_A 45 PAAAIHIRELVAKQPG 60 (145)
T ss_dssp HHHHHHHHHHHHHSTT
T ss_pred HHHHHHHHHHHhcCCC
Confidence 7888999999987633
No 110
>3rsc_A CALG2; TDP, enediyne, structural genomics, PSI-2, protein structure initiative, center for eukaryotic structural genomics; HET: TYD C0T; 2.19A {Micromonospora echinospora} PDB: 3iaa_A*
Probab=41.23 E-value=16 Score=31.26 Aligned_cols=25 Identities=8% Similarity=0.029 Sum_probs=11.7
Q ss_pred EEEEecCCC--CchhhHHHHHHHHHHh
Q 027523 68 VNINFCASC--SYRGTAITMKRMLETQ 92 (222)
Q Consensus 68 V~i~YC~sC--gY~~~f~~lk~~L~~~ 92 (222)
++|.++..- |--..+..+.+.|.++
T Consensus 21 ~rIl~~~~~~~GHv~p~l~La~~L~~~ 47 (415)
T 3rsc_A 21 AHLLIVNVASHGLILPTLTVVTELVRR 47 (415)
T ss_dssp CEEEEECCSCHHHHGGGHHHHHHHHHT
T ss_pred CEEEEEeCCCccccccHHHHHHHHHHC
Confidence 455544432 2223345556666554
No 111
>3tcm_A Alanine aminotransferase 2; pyridoxal phosphate (PLP)-binding; HET: DCS; 2.71A {Hordeum vulgare}
Probab=41.21 E-value=5.6 Score=36.22 Aligned_cols=26 Identities=19% Similarity=0.068 Sum_probs=16.1
Q ss_pred CeEeEeeeccC--CCCChhHHHHHHHHH
Q 027523 182 DDLVFSKLKEG--RFPGEIELKDLVAKQ 207 (222)
Q Consensus 182 g~LV~SKl~~g--rfP~~~EL~~~I~~~ 207 (222)
.+.+.=.+... .-+|.++|.+.|++.
T Consensus 204 ~~~~~~~~~~~~~~~~d~~~l~~~l~~~ 231 (500)
T 3tcm_A 204 GALVPYYLNESTGWGLETSDVKKQLEDA 231 (500)
T ss_dssp CEEEEEECBTTTTSBCCHHHHHHHHHHH
T ss_pred CEEEEEecccccCCCCCHHHHHHHHHHH
Confidence 44555444432 367888888888763
No 112
>4hps_A Pyrrolidone-carboxylate peptidase; structural genomics, nysgrc, PSI-biology, NEW YORK structura genomics research consortium, hydrolase; 1.55A {Xenorhabdus bovienii} PDB: 4gxh_A
Probab=41.12 E-value=38 Score=28.95 Aligned_cols=27 Identities=7% Similarity=0.207 Sum_probs=22.9
Q ss_pred ecCCCCchhhHHHHHHHHHHhCCCcee
Q 027523 72 FCASCSYRGTAITMKRMLETQFPGIDV 98 (222)
Q Consensus 72 YC~sCgY~~~f~~lk~~L~~~yP~i~V 98 (222)
.=..|.|...-+.+.+.+++.-|++.|
T Consensus 62 ~~lPv~y~~~~~~l~~~i~~~~Pd~Vi 88 (228)
T 4hps_A 62 CQIPCIFDTSLEHLYAAVDKYQPELVI 88 (228)
T ss_dssp EEECSSTTHHHHHHHHHHHHHCCSEEE
T ss_pred EEcceEeHHHHHHHHHHHHhhCCCEEE
Confidence 346889999999999999999999754
No 113
>2c07_A 3-oxoacyl-(acyl-carrier protein) reductase; oxidoreductase, FABG, short-chain alcohol reductase, fatty acid biosynthesis, apicoplast; 1.5A {Plasmodium falciparum} SCOP: c.2.1.2
Probab=40.91 E-value=5.7 Score=33.12 Aligned_cols=20 Identities=20% Similarity=0.225 Sum_probs=15.2
Q ss_pred cCCCCChhHHHHHHHHHhcC
Q 027523 191 EGRFPGEIELKDLVAKQLAS 210 (222)
Q Consensus 191 ~grfP~~~EL~~~I~~~l~~ 210 (222)
.+++.+++|+.+.+...+..
T Consensus 248 ~~~~~~~~dvA~~~~~l~~~ 267 (285)
T 2c07_A 248 AGRMGTPEEVANLACFLSSD 267 (285)
T ss_dssp TSSCBCHHHHHHHHHHHHSG
T ss_pred CCCCCCHHHHHHHHHHHhCC
Confidence 45677889999888877754
No 114
>1syr_A Thioredoxin; SGPP, structural genomics, PSI, protein structure initiative structural genomics of pathogenic protozoa consortium; 2.95A {Plasmodium falciparum} SCOP: c.47.1.1
Probab=40.75 E-value=87 Score=21.55 Aligned_cols=30 Identities=37% Similarity=0.489 Sum_probs=22.1
Q ss_pred EEEEEECCeEeEeeeccCCCCChhHHHHHHHHHh
Q 027523 175 AFEVYCNDDLVFSKLKEGRFPGEIELKDLVAKQL 208 (222)
Q Consensus 175 aFEV~vng~LV~SKl~~grfP~~~EL~~~I~~~l 208 (222)
.|-++-||+.++. . .|. +.++|.+.|++.+
T Consensus 82 t~~~~~~G~~~~~-~-~G~--~~~~l~~~l~~~l 111 (112)
T 1syr_A 82 TFKVYKNGSSVDT-L-LGA--NDSALKQLIEKYA 111 (112)
T ss_dssp EEEEEETTEEEEE-E-ESC--CHHHHHHHHHTTC
T ss_pred EEEEEECCcEEEE-E-eCC--CHHHHHHHHHHhh
Confidence 4777779998874 2 343 8999999998754
No 115
>3m63_B Ubiquitin domain-containing protein DSK2; armadillo-like repeats, UBL conjugation pathway, nucleus, phosphoprotein; HET: 1PE; 2.40A {Saccharomyces cerevisiae}
Probab=40.75 E-value=21 Score=26.11 Aligned_cols=30 Identities=10% Similarity=0.137 Sum_probs=18.2
Q ss_pred CccEEEEEe-----cCCCCchhhHHHHHHHHHHhC
Q 027523 64 YGSTVNINF-----CASCSYRGTAITMKRMLETQF 93 (222)
Q Consensus 64 ~g~tV~i~Y-----C~sCgY~~~f~~lk~~L~~~y 93 (222)
+..+|.|.. ...+.-..+-.++|+.|+++.
T Consensus 27 m~i~I~Vk~~g~~~~l~v~~~~TV~~LK~~I~~~~ 61 (101)
T 3m63_B 27 MSLNIHIKSGQDKWEVNVAPESTVLQFKEAINKAN 61 (101)
T ss_dssp --CCEEEECSSCCCCBCCCTTSBHHHHHHHHHHHH
T ss_pred cEEEEEEEECCEEEEEEeCCCCCHHHHHHHHHHHH
Confidence 344566652 333444567788999998875
No 116
>3qt1_I DNA-directed RNA polymerases I, II, and III subun; transferase-transcription complex, RNA polymerase II, transc elongation; 4.30A {Saccharomyces cerevisiae}
Probab=40.71 E-value=4.6 Score=32.08 Aligned_cols=13 Identities=31% Similarity=0.611 Sum_probs=10.2
Q ss_pred EEEecCCCCchhh
Q 027523 69 NINFCASCSYRGT 81 (222)
Q Consensus 69 ~i~YC~sCgY~~~ 81 (222)
...+|.+|+|...
T Consensus 45 l~~~CrtCgY~~~ 57 (133)
T 3qt1_I 45 LLFECRTCSYVEE 57 (133)
T ss_dssp BCCBCSSSCCBCC
T ss_pred eEEECCCCCCcEE
Confidence 4679999999653
No 117
>1oix_A RAS-related protein RAB-11A; small G protein, intracellular trafficking, GTP-binding, lipoprotein, prenylation, protein transport; HET: GDP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1oiw_A* 1oiv_A* 3rwo_B* 3rwm_B*
Probab=40.65 E-value=8 Score=30.04 Aligned_cols=27 Identities=7% Similarity=0.252 Sum_probs=12.0
Q ss_pred EEEEEecCCCCchhhHHHHHHHHHHhCC
Q 027523 67 TVNINFCASCSYRGTAITMKRMLETQFP 94 (222)
Q Consensus 67 tV~i~YC~sCgY~~~f~~lk~~L~~~yP 94 (222)
.+++..+...|--|.-. ++.+....+|
T Consensus 29 ~~kv~lvG~~g~GKSTL-l~~l~~~~~~ 55 (191)
T 1oix_A 29 LFKVVLIGDSGVGKSNL-LSRFTRNEFN 55 (191)
T ss_dssp EEEEEEEECTTSSHHHH-HHHHHHSCCC
T ss_pred ceEEEEECcCCCCHHHH-HHHHhcCCCC
Confidence 34555555555444322 2344444444
No 118
>2l4h_A Calcium and integrin-binding protein 1; metal binding protei; NMR {Homo sapiens} PDB: 2l4i_A 2lm5_A
Probab=40.51 E-value=5.9 Score=31.83 Aligned_cols=14 Identities=21% Similarity=0.083 Sum_probs=7.2
Q ss_pred CCCChhHHHHHHHH
Q 027523 193 RFPGEIELKDLVAK 206 (222)
Q Consensus 193 rfP~~~EL~~~I~~ 206 (222)
++-+.+|+.+.+..
T Consensus 144 G~Is~~El~~~l~~ 157 (214)
T 2l4h_A 144 GTLNREDLSRLVNC 157 (214)
T ss_dssp SCBCHHHHHHHHHH
T ss_pred CcCCHHHHHHHHHH
Confidence 34455555555544
No 119
>3b9f_I Protein C inhibitor; michaelis complex, acute phase, blood coagulation, cleavage of basic residues, disease mutation; HET: NAG FUC SGN IDS; 1.60A {Homo sapiens} PDB: 2ol2_A*
Probab=40.09 E-value=6 Score=35.80 Aligned_cols=16 Identities=6% Similarity=0.102 Sum_probs=8.5
Q ss_pred CCCChhHHHHHHHHHh
Q 027523 193 RFPGEIELKDLVAKQL 208 (222)
Q Consensus 193 rfP~~~EL~~~I~~~l 208 (222)
.|-+.++-.+.|.+-+
T Consensus 150 dF~~~~~a~~~IN~WV 165 (395)
T 3b9f_I 150 NFRDSAGAMKQINDYV 165 (395)
T ss_dssp CTTSHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHH
Confidence 4445555555555544
No 120
>3vu7_H DNA repair protein REV1; DNA replication, translesion DNA synthesis, damage tolerance, DNA repair, replication; HET: DNA; 2.80A {Homo sapiens} PDB: 2lsj_A*
Probab=39.92 E-value=10 Score=29.86 Aligned_cols=14 Identities=14% Similarity=0.038 Sum_probs=9.8
Q ss_pred hhHHHHHHHHHHhC
Q 027523 80 GTAITMKRMLETQF 93 (222)
Q Consensus 80 ~~f~~lk~~L~~~y 93 (222)
....++|.+|++=+
T Consensus 36 t~l~evK~lL~~Wv 49 (124)
T 3vu7_H 36 VEFNDVKTLLREWI 49 (124)
T ss_dssp CSHHHHHHHHHHHH
T ss_pred cCHHHHHHHHHHHH
Confidence 36688888886644
No 121
>1jxh_A Phosphomethylpyrimidine kinase; THID, ribokinase family, phophorylation, transferase; 2.30A {Salmonella typhimurium} SCOP: c.72.1.2 PDB: 1jxi_A*
Probab=39.87 E-value=6.1 Score=33.40 Aligned_cols=7 Identities=0% Similarity=-0.197 Sum_probs=3.2
Q ss_pred Cceeecc
Q 027523 95 GIDVVLA 101 (222)
Q Consensus 95 ~i~V~G~ 101 (222)
+..+.|.
T Consensus 96 ~~v~~G~ 102 (288)
T 1jxh_A 96 DTTKIGM 102 (288)
T ss_dssp SEEEECC
T ss_pred CEEEECC
Confidence 4444553
No 122
>3oc3_A Helicase MOT1, MOT1; regulation of transcription, hydrolase-transc complex; HET: MES; 3.10A {Encephalitozoon cuniculi}
Probab=39.46 E-value=6.2 Score=39.48 Aligned_cols=19 Identities=26% Similarity=0.184 Sum_probs=13.7
Q ss_pred cCCCCChhHHHHHHHHHhc
Q 027523 191 EGRFPGEIELKDLVAKQLA 209 (222)
Q Consensus 191 ~grfP~~~EL~~~I~~~l~ 209 (222)
.+.-|+.+|=++.|++...
T Consensus 119 ~~~~~~~~~q~~~~k~i~~ 137 (800)
T 3oc3_A 119 NVQAPSIQEQKRMVRKIAK 137 (800)
T ss_dssp CCCCCCHHHHHHHHHHHTT
T ss_pred cccCccHHHHHHHHHHHhc
Confidence 4566888888888866543
No 123
>2zyd_A 6-phosphogluconate dehydrogenase, decarboxylating; NADP, pentose phosphate pathway, oxidoreductase, 6-phosphogl dehydrogenase; HET: GLO; 1.50A {Escherichia coli} PDB: 2zya_A* 3fwn_A* 2zyg_A 2w8z_A* 2w90_A*
Probab=39.26 E-value=6.8 Score=36.46 Aligned_cols=7 Identities=0% Similarity=-0.145 Sum_probs=2.8
Q ss_pred hHHHHHH
Q 027523 107 LPKRLLA 113 (222)
Q Consensus 107 ~~k~~La 113 (222)
..+.++.
T Consensus 91 ~v~~vl~ 97 (480)
T 2zyd_A 91 GTDAAID 97 (480)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 3444443
No 124
>4g9p_A 4-hydroxy-3-methylbut-2-EN-1-YL diphosphate synth; oxidoreductase, isoprenoid biosynthesis, non mevalonate PATH iron-sulphur-cluster; HET: CDI MES; 1.55A {Thermus thermophilus} PDB: 2y0f_A*
Probab=38.97 E-value=13 Score=34.75 Aligned_cols=35 Identities=23% Similarity=0.190 Sum_probs=25.8
Q ss_pred CCcEEEEEECCeEeEeeeccCCCCChhHHHHHHHHHhc
Q 027523 172 SSGAFEVYCNDDLVFSKLKEGRFPGEIELKDLVAKQLA 209 (222)
Q Consensus 172 stGaFEV~vng~LV~SKl~~grfP~~~EL~~~I~~~l~ 209 (222)
..|.--||.+|+.+- |+.+.. =.++|+++|++.+.
T Consensus 365 ~~~~~~lf~~G~~~~-~v~~~~--iv~~l~~~i~~~~~ 399 (406)
T 4g9p_A 365 EEPKAPVYADGKLLT-ILKGEG--IAEEFLRLVEDYVK 399 (406)
T ss_dssp SCSEEEEEETTEEEE-EEESSC--HHHHHHHHHHHHHH
T ss_pred CCCeeeEEECCEEEE-ecCHHH--HHHHHHHHHHHHHH
Confidence 455788999999775 566554 36788888888764
No 125
>2wte_A CSA3; antiviral protein, viral resistance, winged helix-turn-helix prnai nucleotide-binding domain; HET: MSE; 1.80A {Sulfolobus solfataricus}
Probab=38.86 E-value=33 Score=29.13 Aligned_cols=44 Identities=9% Similarity=0.035 Sum_probs=30.6
Q ss_pred CCCCCCCcc-----cccccCCccEEEEEecCC--CCchhhHHHHHHHHHHh
Q 027523 49 LTPDFPSQK-----IVGGIGYGSTVNINFCAS--CSYRGTAITMKRMLETQ 92 (222)
Q Consensus 49 ~~~~~~~~~-----~~~~~~~g~tV~i~YC~s--CgY~~~f~~lk~~L~~~ 92 (222)
.|+.|=..- ...|+..+.+|-+.++.. =..+++++++++.+...
T Consensus 13 ~tlGFd~~~~vral~~~g~~~~d~ViLv~~~~~~~~~~~A~~~i~~~l~~~ 63 (244)
T 2wte_A 13 VTMGFNETFLLRLLNETSAQKEDSLVIVVPSPIVSGTRAAIESLRAQISRL 63 (244)
T ss_dssp ECCCSCCHHHHHHHHHTTCCTTSEEEEEEESSCCHHHHHHHHHHHHHHHHH
T ss_pred eccCcChHHHHHHHHHhCCCCCCEEEEEeCCCcchhHHHHHHHHHHHHHHc
Confidence 566665433 334556677888888764 34788999999999887
No 126
>2c0d_A Thioredoxin peroxidase 2; peroxiredoxin, 2-Cys, thioredoxin dependant, mitochondrial, antioxidant, oxidoreductase, redox-active center; 1.78A {Plasmodium falciparum}
Probab=38.66 E-value=6.5 Score=32.37 Aligned_cols=36 Identities=11% Similarity=0.017 Sum_probs=24.7
Q ss_pred cEEEEEECCeEeEeeeccC-CCCChhHHHHHHHHHhc
Q 027523 174 GAFEVYCNDDLVFSKLKEG-RFPGEIELKDLVAKQLA 209 (222)
Q Consensus 174 GaFEV~vng~LV~SKl~~g-rfP~~~EL~~~I~~~l~ 209 (222)
..|-|-=||++++...... .-++.+|+++.|++...
T Consensus 148 ~~~lID~~G~I~~~~~g~~~~~~~~~ell~~l~~L~~ 184 (221)
T 2c0d_A 148 GLFIIDKNGCVRHQTVNDLPIGRNVQEVLRTIDSIIH 184 (221)
T ss_dssp EEEEECTTSBEEEEEEECTTCCCCHHHHHHHHHHHHH
T ss_pred eEEEECCCCeEEEEEecCCCCCCCHHHHHHHHHHHhh
Confidence 3454444699999876532 23688999999988653
No 127
>3icu_A E3 ubiquitin-protein ligase RNF128; E3 ligase, energy, PA domain, transmembrane,protein turnover conjugation pathway; HET: NAG; 2.10A {Homo sapiens}
Probab=38.63 E-value=12 Score=31.32 Aligned_cols=41 Identities=15% Similarity=0.117 Sum_probs=11.2
Q ss_pred CCCCCCCCCCCCCCCCCCCCcccccccCCccEEEEEecCCC
Q 027523 36 SHHHHKPPIPSENLTPDFPSQKIVGGIGYGSTVNINFCASC 76 (222)
Q Consensus 36 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~tV~i~YC~sC 76 (222)
||||||..+-++...+=+|-....+.......|.|.|+.+-
T Consensus 5 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~vn~sy~d~~ 45 (194)
T 3icu_A 5 HHHHHHDYDIPTTENLYFQGAMDGAEAVWTAYLNVSWRVPH 45 (194)
T ss_dssp -------------------CCCCCSSCEEEEEEEEEEECCS
T ss_pred ccccccccCcccHHHHhccCccccceeEEEEEEEEEEECCC
Confidence 33334434433444444442222222233457899998553
No 128
>1pd6_A Cardiac MYBP-C;, myosin-binding protein C, cardiac-type, domain C2; IG domain, structural protein; NMR {Homo sapiens} SCOP: b.1.1.4
Probab=38.43 E-value=13 Score=26.34 Aligned_cols=12 Identities=8% Similarity=0.277 Sum_probs=6.8
Q ss_pred CCCcEEEEEECC
Q 027523 171 QSSGAFEVYCND 182 (222)
Q Consensus 171 ~stGaFEV~vng 182 (222)
..+|.|...++.
T Consensus 82 ~D~G~Y~C~a~~ 93 (104)
T 1pd6_A 82 ADDAAYQCVVGG 93 (104)
T ss_dssp SSCEEEEEEETT
T ss_pred ccCEEEEEEECC
Confidence 356666665543
No 129
>2axq_A Saccharopine dehydrogenase; rossmann fold variant, saccharopine reductase fold (domain II), alpha/beta protein; 1.70A {Saccharomyces cerevisiae}
Probab=38.07 E-value=6.9 Score=36.40 Aligned_cols=6 Identities=50% Similarity=1.309 Sum_probs=2.4
Q ss_pred EEEEEE
Q 027523 175 AFEVYC 180 (222)
Q Consensus 175 aFEV~v 180 (222)
+|+.+.
T Consensus 170 s~~~wt 175 (467)
T 2axq_A 170 SFLSYC 175 (467)
T ss_dssp EEEEEE
T ss_pred EEEEEe
Confidence 344433
No 130
>3osq_A Maltose-binding periplasmic protein, green fluore protein; engineered protein, sensor protein, fluorescent protein, MBP maltose sensor; HET: C12 MAL; 1.90A {Escherichia coli}
Probab=38.06 E-value=38 Score=32.62 Aligned_cols=38 Identities=13% Similarity=0.084 Sum_probs=23.9
Q ss_pred CccEEEEEecCCCCchhhHHHHHHHHHHhCCCceeecccC
Q 027523 64 YGSTVNINFCASCSYRGTAITMKRMLETQFPGIDVVLANY 103 (222)
Q Consensus 64 ~g~tV~i~YC~sCgY~~~f~~lk~~L~~~yP~i~V~G~nY 103 (222)
.+.+|.+-. .+-.....++++.+..+++ |+++|+-..+
T Consensus 39 ~~~tLtvw~-~~~~~~~~~~~~i~~Fek~-~gIkV~~~~~ 76 (661)
T 3osq_A 39 EEGKLVIWI-NGDKGYNGLAEVGKKFEKD-TGIKVTVEHP 76 (661)
T ss_dssp CTTSEEEEC-CTTSCHHHHHHHHHHHHHH-HCCCEEEECC
T ss_pred CCCEEEEEe-CCCcchHHHHHHHHHHHhh-hCcEEEEEeC
Confidence 344666642 3322345677777777888 8998876544
No 131
>2dvz_A BUGE, putative exported protein; periplamsic binding proteins, carboxylate binding, glutamate, transport protein; HET: GLU; 2.30A {Bordetella pertussis}
Probab=38.01 E-value=21 Score=31.15 Aligned_cols=22 Identities=18% Similarity=0.286 Sum_probs=12.2
Q ss_pred hHHHHHHHHHHhCCCceeecccC
Q 027523 81 TAITMKRMLETQFPGIDVVLANY 103 (222)
Q Consensus 81 ~f~~lk~~L~~~yP~i~V~G~nY 103 (222)
....+.+.|+++. +..|+=+|-
T Consensus 36 ~aR~la~~l~~~l-g~~vvV~N~ 57 (314)
T 2dvz_A 36 IARLVTQRMSQEL-GQPMVVENK 57 (314)
T ss_dssp HHHHHHHHHHHHH-TSCEEEEEC
T ss_pred HHHHHHHHHHHHh-CCCEEEEEC
Confidence 4455677777766 444444443
No 132
>1ilo_A Conserved hypothetical protein MTH895; beta-alpha-beta-alpha-beta-BETA-alpha motif, structural genomics, PSI; NMR {Methanothermobacterthermautotrophicus str} SCOP: c.47.1.1
Probab=37.90 E-value=76 Score=20.08 Aligned_cols=23 Identities=26% Similarity=0.546 Sum_probs=17.6
Q ss_pred EEEEECCeEeEeeeccCCCCChhHHHHHH
Q 027523 176 FEVYCNDDLVFSKLKEGRFPGEIELKDLV 204 (222)
Q Consensus 176 FEV~vng~LV~SKl~~grfP~~~EL~~~I 204 (222)
+-+ ||+.++. |..|+.++|.+.|
T Consensus 54 ~~~--~G~~~~~----G~~~~~~~l~~~l 76 (77)
T 1ilo_A 54 LAV--DGELKIM----GRVASKEEIKKIL 76 (77)
T ss_dssp EEE--TTEEEEC----SSCCCHHHHHHHC
T ss_pred EEE--CCEEEEc----CCCCCHHHHHHHh
Confidence 444 9999876 6668999988764
No 133
>3dfz_A SIRC, precorrin-2 dehydrogenase; NAD dehydrogenase, cobalamin biosynthesis, NAD, oxidoreducta porphyrin biosynthesis; 2.30A {Bacillus megaterium}
Probab=37.78 E-value=6.7 Score=33.27 Aligned_cols=24 Identities=21% Similarity=0.308 Sum_probs=10.9
Q ss_pred CeEeEeeeccCCCCChhHHHHHHHHHh
Q 027523 182 DDLVFSKLKEGRFPGEIELKDLVAKQL 208 (222)
Q Consensus 182 g~LV~SKl~~grfP~~~EL~~~I~~~l 208 (222)
|.++-+=-.+|.=|- +-+.||+.+
T Consensus 138 g~l~iaIST~G~sP~---la~~iR~~i 161 (223)
T 3dfz_A 138 GRLSLAISTDGASPL---LTKRIKEDL 161 (223)
T ss_dssp TTEEEEEECTTSCHH---HHHHHHHHH
T ss_pred CCEEEEEECCCCCcH---HHHHHHHHH
Confidence 455555444455333 444444433
No 134
>3tc3_A UV damage endonuclease; TIM-barrel, hydrolase; 1.50A {Sulfolobus acidocaldarius}
Probab=37.68 E-value=9.9 Score=34.24 Aligned_cols=12 Identities=8% Similarity=0.293 Sum_probs=6.1
Q ss_pred CCccEEEEEecC
Q 027523 63 GYGSTVNINFCA 74 (222)
Q Consensus 63 ~~g~tV~i~YC~ 74 (222)
..|..|++-||.
T Consensus 17 ~~g~~mrlGY~c 28 (310)
T 3tc3_A 17 IEGRHMRVGYVS 28 (310)
T ss_dssp ----CEEEEEES
T ss_pred ccCceEEeeeee
Confidence 345568888883
No 135
>2vup_A Glutathione peroxidase-like protein; oxidoreductase, trypanothione, dithiol-dependant peroxidase; 2.10A {Trypanosoma brucei}
Probab=37.67 E-value=1.4e+02 Score=22.91 Aligned_cols=35 Identities=11% Similarity=-0.047 Sum_probs=24.9
Q ss_pred cEEEEEECCeEeEeeeccCCCCChhHHHHHHHHHhcCC
Q 027523 174 GAFEVYCNDDLVFSKLKEGRFPGEIELKDLVAKQLASS 211 (222)
Q Consensus 174 GaFEV~vng~LV~SKl~~grfP~~~EL~~~I~~~l~~~ 211 (222)
-.|-|.=||++++... | ..+.+++.+.|++.+...
T Consensus 153 ~~~lid~~G~i~~~~~--g-~~~~~~l~~~i~~ll~~~ 187 (190)
T 2vup_A 153 TSFLIDRDGVPVERFS--P-GASVKDIEKKLIPLLEST 187 (190)
T ss_dssp CEEEECTTSCEEEEEC--T-TCCHHHHHHHHHHHHHCC
T ss_pred eEEEECCCCcEEEEEC--C-CCCHHHHHHHHHHHHhhc
Confidence 4566666899987532 2 446789999999988644
No 136
>1wue_A Mandelate racemase/muconate lactonizing enzyme FA protein; structural genomics, unknown function, nysgxrc target T2185; 2.10A {Enterococcus faecalis} SCOP: c.1.11.2 d.54.1.1
Probab=37.47 E-value=7 Score=34.95 Aligned_cols=11 Identities=18% Similarity=0.413 Sum_probs=7.1
Q ss_pred hHHHHHHHHHh
Q 027523 198 IELKDLVAKQL 208 (222)
Q Consensus 198 ~EL~~~I~~~l 208 (222)
.+.++.||+.+
T Consensus 190 ~~~v~avr~a~ 200 (386)
T 1wue_A 190 VEPVALIRQHF 200 (386)
T ss_dssp HHHHHHHHHHC
T ss_pred HHHHHHHHHhC
Confidence 45566777765
No 137
>3rlb_A THIT; S-component, ECF transporter, ABC transporter, substrate-BIN domain, membrane, thiamine-binding protein; HET: BNG VIB; 2.00A {Lactococcus lactis subsp}
Probab=37.33 E-value=7 Score=32.70 Aligned_cols=6 Identities=50% Similarity=0.528 Sum_probs=2.3
Q ss_pred hhHhhh
Q 027523 143 PWYYSL 148 (222)
Q Consensus 143 ~w~~~~ 148 (222)
+|++++
T Consensus 153 ~~~ySl 158 (192)
T 3rlb_A 153 AVAYSL 158 (192)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 344333
No 138
>1kr4_A Protein TM1056, CUTA; structural genomics, PSI, protein structure initiative center for structural genomics, MCSG, unknown function; 1.40A {Thermotoga maritima} SCOP: d.58.5.2
Probab=37.18 E-value=20 Score=28.19 Aligned_cols=31 Identities=10% Similarity=0.179 Sum_probs=18.9
Q ss_pred ccCCccEEEEEecCCCCchhhHHHHHHHHHHh
Q 027523 61 GIGYGSTVNINFCASCSYRGTAITMKRMLETQ 92 (222)
Q Consensus 61 ~~~~g~tV~i~YC~sCgY~~~f~~lk~~L~~~ 92 (222)
+..+...+.+.||+ |.-+..++.+.+.|.++
T Consensus 16 ~~~~M~~~~lV~tT-~p~~e~A~~iA~~Lve~ 46 (125)
T 1kr4_A 16 ALYFMGHMILVYST-FPNEEKALEIGRKLLEK 46 (125)
T ss_dssp CCEECCCEEEEEEE-ESSHHHHHHHHHHHHHT
T ss_pred HHHhhhccEEEEEe-cCCHHHHHHHHHHHHhc
Confidence 33444344555654 66678888887776554
No 139
>3dxb_A Thioredoxin N-terminally fused to PUF60(UHM); splicing, FBP interacting repressor, RRM, electron TRAN redox-active center, transport; 2.20A {Escherichia coli O157}
Probab=37.08 E-value=1.5e+02 Score=23.39 Aligned_cols=36 Identities=17% Similarity=0.242 Sum_probs=26.4
Q ss_pred EEEEEECCeEeEeeeccCCCCChhHHHHHHHHHhcCCCC
Q 027523 175 AFEVYCNDDLVFSKLKEGRFPGEIELKDLVAKQLASSRL 213 (222)
Q Consensus 175 aFEV~vng~LV~SKl~~grfP~~~EL~~~I~~~l~~~~~ 213 (222)
.|-++-||+.+.. .. +..+.+++.+.|++.+.....
T Consensus 87 t~~~~~~G~~~~~-~~--G~~~~~~l~~~l~~~l~~~~~ 122 (222)
T 3dxb_A 87 TLLLFKNGEVAAT-KV--GALSKGQLKEFLDANLAGSAM 122 (222)
T ss_dssp EEEEEETTEEEEE-EE--SCCCHHHHHHHHHHHSCCSCC
T ss_pred EEEEEECCeEEEE-ec--cccChHHHHHHHHhhcccccc
Confidence 4667779988873 33 356899999999998865543
No 140
>3a5i_A Flagellar biosynthesis protein FLHA; four domains, thioredoxin-like fold, bacterial flagellum BIO bacterial flagellum protein export; 2.80A {Salmonella typhimurium}
Probab=36.79 E-value=7.3 Score=36.07 Aligned_cols=15 Identities=0% Similarity=0.031 Sum_probs=8.8
Q ss_pred CCcEEEEEECCeEeE
Q 027523 172 SSGAFEVYCNDDLVF 186 (222)
Q Consensus 172 stGaFEV~vng~LV~ 186 (222)
..+.|.|.++|..|-
T Consensus 111 ~p~~Y~I~i~gv~va 125 (389)
T 3a5i_A 111 QPARYRILMKGVEIG 125 (389)
T ss_dssp CTTEEEEEETTEEEE
T ss_pred CCCeEEEEECCEEEE
Confidence 345566666665554
No 141
>1wuf_A Hypothetical protein LIN2664; structural genomics, unknown function, nysgxrc target T2186, superfamily, protein structure initiative, PSI; 2.90A {Listeria innocua} SCOP: c.1.11.2 d.54.1.1
Probab=36.74 E-value=7.3 Score=34.98 Aligned_cols=11 Identities=27% Similarity=0.477 Sum_probs=6.1
Q ss_pred hHHHHHHHHHh
Q 027523 198 IELKDLVAKQL 208 (222)
Q Consensus 198 ~EL~~~I~~~l 208 (222)
.|.++.||+.+
T Consensus 190 ~~~v~avr~a~ 200 (393)
T 1wuf_A 190 IQFVEAVRKSF 200 (393)
T ss_dssp HHHHHHHHTTC
T ss_pred HHHHHHHHHHc
Confidence 44556666655
No 142
>3odm_A Pepcase, PEPC, phosphoenolpyruvate carboxylase; beta-barrel, lyase; 2.95A {Clostridium perfringens}
Probab=36.63 E-value=7.3 Score=37.91 Aligned_cols=57 Identities=11% Similarity=0.107 Sum_probs=39.0
Q ss_pred hhhHHHHHHHHHHhCC------Cc-----eeecccCCCChHHHHHHhhhhHHHHHHHHHHhhccccccccCCCCh
Q 027523 79 RGTAITMKRMLETQFP------GI-----DVVLANYPPPLPKRLLAKVVPAVQIGVIGIVVAGEQIFPMLGMTPP 142 (222)
Q Consensus 79 ~~~f~~lk~~L~~~yP------~i-----~V~G~nYPpp~~k~~Lak~v~~~q~~~i~~i~~G~~iF~~lG~~~P 142 (222)
-...+|+.++++.--+ |+ +.+|-.-|-.-.++++++... .=+.-|+++|-..-++-|
T Consensus 42 i~~~dEv~EA~~~~s~~~~~~lGcdE~MwD~EGK~td~~~~~kl~s~~~~-------~~~~lG~d~flT~RvPNp 109 (560)
T 3odm_A 42 ISIQQEPAEAIKGLTPQDKGGLGIEEVMIDFEGKLTPYHQTSQIALGLIS-------NGIIPGKDVRVTPRIPNA 109 (560)
T ss_dssp CCTTTHHHHHHHHTSCGGGTSCCCCEEEEECSSBCCCTTHHHHHHHHHHT-------TTCCBTTTBEEEEECCCT
T ss_pred CCccccHHHHHHHhhhccccCCCCceeeecCCCCcCcHHHHHHHHHhhhh-------cCCCCCCceEEecCCCCh
Confidence 3466777777777666 54 467877888888888888876 224557887776666433
No 143
>4f3p_A Glutamine-binding periplasmic protein; ssgcid, structural genomics, GLUT seattle structural genomics center for infectious disease; 2.40A {Burkholderia pseudomallei}
Probab=36.59 E-value=34 Score=26.69 Aligned_cols=25 Identities=12% Similarity=0.169 Sum_probs=16.7
Q ss_pred chhhHHHHHHHHHHhCCCceeecccC
Q 027523 78 YRGTAITMKRMLETQFPGIDVVLANY 103 (222)
Q Consensus 78 Y~~~f~~lk~~L~~~yP~i~V~G~nY 103 (222)
+.+-..++-+.+.++. +++++-..+
T Consensus 45 ~~G~~~dl~~~i~~~~-g~~~~~~~~ 69 (249)
T 4f3p_A 45 YVGFDLDLWAEIAKGA-GWTYKIQPM 69 (249)
T ss_dssp EESHHHHHHHHHHHHH-TCCEEEEEE
T ss_pred EEEEhHHHHHHHHHHc-CCceEEEec
Confidence 4567778877777775 666655544
No 144
>3c0t_B Mediator of RNA polymerase II transcription subunit 8; beta barrel, channel, protein-protein complex, activator, nucleus; 2.40A {Schizosaccharomyces pombe}
Probab=36.57 E-value=4.8 Score=24.74 Aligned_cols=13 Identities=15% Similarity=0.345 Sum_probs=8.0
Q ss_pred hhhhhhccCCCCC
Q 027523 17 CSDLLNLFTPPPP 29 (222)
Q Consensus 17 ~~d~~~~f~~~~~ 29 (222)
..|+++.+..-.-
T Consensus 10 ltdilsfmksgkr 22 (33)
T 3c0t_B 10 LTDILSFMKSGKR 22 (33)
T ss_dssp HHHHHHHHHHCCC
T ss_pred HHHHHHHHHcchH
Confidence 3677777765443
No 145
>3gl3_A Putative thiol:disulfide interchange protein DSBE; oxidoreductase, PSI-II, structural genomics, protein structure initiative; 2.09A {Chlorobium tepidum tls}
Probab=36.39 E-value=45 Score=24.03 Aligned_cols=40 Identities=13% Similarity=0.131 Sum_probs=24.4
Q ss_pred EEEEEECCeEeEeeeccCCCCChhHHHHHHHHHhcCCCCCC
Q 027523 175 AFEVYCNDDLVFSKLKEGRFPGEIELKDLVAKQLASSRLVD 215 (222)
Q Consensus 175 aFEV~vng~LV~SKl~~grfP~~~EL~~~I~~~l~~~~~~~ 215 (222)
.|-|.-||++++.... ..-++.++|.+.|++.+.......
T Consensus 109 ~~lid~~G~i~~~~~g-~~~~~~~~l~~~i~~~~~~~~~~~ 148 (152)
T 3gl3_A 109 SFLIDRNGKVLLQHVG-FRPADKEALEQQILAALGGNEGHH 148 (152)
T ss_dssp EEEECTTSBEEEEEES-CCTTTHHHHHHHHHHHTC------
T ss_pred EEEECCCCCEEEEEcc-CCCcCHHHHHHHHHHHHccccccc
Confidence 3555468888886543 334577999999999887665443
No 146
>1uoz_A Putative cellulase; hydrolase, glycoside hydrolase, family 6; HET: GLC SSG; 1.10A {Mycobacterium tuberculosis} SCOP: c.6.1.1 PDB: 1up3_A* 1up0_A* 1up2_A*
Probab=36.27 E-value=10 Score=34.34 Aligned_cols=8 Identities=0% Similarity=-0.039 Sum_probs=3.4
Q ss_pred hhHHHHHH
Q 027523 197 EIELKDLV 204 (222)
Q Consensus 197 ~~EL~~~I 204 (222)
.+++.+++
T Consensus 188 a~~~a~~l 195 (315)
T 1uoz_A 188 AEAMAARL 195 (315)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 34444444
No 147
>3qwq_B Adnectin; cell surface receptor, tyrosine kinase, glycoprotein, adnect antitumor, drug, engineered binding protein; HET: NAG BMA MAN FUC; 2.75A {Homo sapiens} PDB: 3qwr_D*
Probab=36.27 E-value=8 Score=28.41 Aligned_cols=11 Identities=45% Similarity=0.742 Sum_probs=0.4
Q ss_pred CCCCCCCCCCC
Q 027523 31 PPKSASHHHHK 41 (222)
Q Consensus 31 ~~~~~~~~~~~ 41 (222)
.+|.+||||||
T Consensus 104 ~~~~~~~~~~~ 114 (114)
T 3qwq_B 104 DKPSQHHHHHH 114 (114)
T ss_dssp C----------
T ss_pred CCcccccccCC
Confidence 45566665554
No 148
>3ces_A MNMG, tRNA uridine 5-carboxymethylaminomethyl modificat GIDA, GIDA; tRNA modification, FAD binding domain, structural genomics; 2.41A {Escherichia coli} PDB: 3cp2_A 3g05_A
Probab=36.19 E-value=8.2 Score=37.84 Aligned_cols=21 Identities=29% Similarity=0.418 Sum_probs=4.7
Q ss_pred CCCCCCCCCCCC--CCCCCCCCC
Q 027523 34 SASHHHHKPPIP--SENLTPDFP 54 (222)
Q Consensus 34 ~~~~~~~~~~~~--~~~~~~~~~ 54 (222)
+||||||||..- +....+.|+
T Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~~ 26 (651)
T 3ces_A 4 SHHHHHHHHSSGLVPRGSHMFYP 26 (651)
T ss_dssp ----------CEEECCCSCEECS
T ss_pred ccccccccccCCCCCCCCCCCCC
Confidence 355555555532 334445553
No 149
>2oar_A Large-conductance mechanosensitive channel; stretch activated ION channel mechanosensitive, membrane protein; 3.50A {Mycobacterium tuberculosis H37RA} SCOP: f.16.1.1
Probab=36.03 E-value=7.6 Score=32.52 Aligned_cols=51 Identities=14% Similarity=0.081 Sum_probs=29.7
Q ss_pred chhhHHHHHHHHHHhCCCc------eeecccCCCChHHHHHHhhhhHHHHHHHHHHhhcccccccc
Q 027523 78 YRGTAITMKRMLETQFPGI------DVVLANYPPPLPKRLLAKVVPAVQIGVIGIVVAGEQIFPML 137 (222)
Q Consensus 78 Y~~~f~~lk~~L~~~yP~i------~V~G~nYPpp~~k~~Lak~v~~~q~~~i~~i~~G~~iF~~l 137 (222)
.++-+.++|+++.. .++ .|.|+ +...++..+++-+=+=+|+ ++.|.+ |..+
T Consensus 21 ~~~mlkeFKeFi~R--GNViDLAVgVIIGa-----AF~~IVtSlV~dIImPlIg-l~Gg~d-fs~l 77 (174)
T 2oar_A 21 DKHMLKGFKEFLAR--GNIVDLAVAVVIGT-----AFTALVTKFTDSIITPLIN-RIGVNA-QSDV 77 (174)
T ss_dssp ---CHHHHHHHHHS--CHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHH-HHCCCC-EEEC
T ss_pred HHHHHHHHHHHHHh--CChHHHHHHHHHHH-----HHHHHHHHHHHHhHHHHHH-hhCCCC-cccc
Confidence 35567888888843 232 25564 5677777777777777777 344444 3434
No 150
>3av0_A DNA double-strand break repair protein MRE11; DNA repair, calcineurin-like phosphoesterase, ABC transporte domain-like; HET: DNA AGS; 3.10A {Methanocaldococcus jannaschii} PDB: 3auz_A*
Probab=35.81 E-value=56 Score=28.74 Aligned_cols=24 Identities=4% Similarity=-0.081 Sum_probs=14.8
Q ss_pred hHHHHHHHHHHhCCCcee-ecccCC
Q 027523 81 TAITMKRMLETQFPGIDV-VLANYP 104 (222)
Q Consensus 81 ~f~~lk~~L~~~yP~i~V-~G~nYP 104 (222)
+++++-+.+.+.=|++.| .|+-|.
T Consensus 48 ~l~~~v~~~~~~~~D~VliaGDl~d 72 (386)
T 3av0_A 48 SFKLCIKKILEIKPDVVLHSGDLFN 72 (386)
T ss_dssp HHHHHHHHHHTTCCSEEEECSCSBS
T ss_pred HHHHHHHHHHHcCCCEEEECCCCCC
Confidence 455666666666788754 466553
No 151
>4aaj_A N-(5'-phosphoribosyl)anthranilate isomerase; alpha/beta-barrel, hyperthermophilic, phosphoribo isomerase; 1.75A {Pyrococcus furiosus}
Probab=35.81 E-value=9.8 Score=32.39 Aligned_cols=20 Identities=20% Similarity=0.238 Sum_probs=10.3
Q ss_pred ccccccccCCCChhhHhhhh
Q 027523 130 GEQIFPMLGMTPPPWYYSLR 149 (222)
Q Consensus 130 G~~iF~~lG~~~P~w~~~~~ 149 (222)
+-++...=|-..|.....++
T Consensus 92 ~ld~vQLHG~E~~~~~~~l~ 111 (228)
T 4aaj_A 92 GAQYIQVHSNALPQTIDTLK 111 (228)
T ss_dssp TCSEEEECSCCCHHHHHHHH
T ss_pred cchheecccccCHHHHHHHh
Confidence 33444444555676665554
No 152
>1zye_A Thioredoxin-dependent peroxide reductase; catenane, dodecamer, peroxiredoxin, oxidoreductase; 3.30A {Bos taurus} SCOP: c.47.1.10
Probab=35.42 E-value=49 Score=26.63 Aligned_cols=36 Identities=17% Similarity=-0.039 Sum_probs=24.2
Q ss_pred cEEEEEECCeEeEeeeccC-CCCChhHHHHHHHHHhc
Q 027523 174 GAFEVYCNDDLVFSKLKEG-RFPGEIELKDLVAKQLA 209 (222)
Q Consensus 174 GaFEV~vng~LV~SKl~~g-rfP~~~EL~~~I~~~l~ 209 (222)
..|-|-=||++++...... .-++.+|+.+.|++...
T Consensus 149 ~~~liD~~G~I~~~~~g~~~~~~~~~ell~~l~~l~~ 185 (220)
T 1zye_A 149 GLFIIDPNGVIKHLSVNDLPVGRSVEETLRLVKAFQF 185 (220)
T ss_dssp EEEEECTTSBEEEEEEECTTCCCCHHHHHHHHHHHHH
T ss_pred eEEEECCCCEEEEEEecCCCCCCCHHHHHHHHHHhhh
Confidence 3444445799998765431 12478999999988664
No 153
>3c3r_A Programmed cell death 6-interacting protein; ALIX BRO1 CHMP4C amphipathic-helix, apoptosis, HOST-virus interaction, protein transport, transport; 2.02A {Homo sapiens} PDB: 2oew_A 3c3o_A 3c3q_A
Probab=35.34 E-value=7.9 Score=34.98 Aligned_cols=12 Identities=8% Similarity=0.573 Sum_probs=6.5
Q ss_pred HHHHHHHHHhCC
Q 027523 83 ITMKRMLETQFP 94 (222)
Q Consensus 83 ~~lk~~L~~~yP 94 (222)
..++++|.+.|.
T Consensus 40 ~~l~~~I~~~y~ 51 (380)
T 3c3r_A 40 KPLVKFIQQTYP 51 (380)
T ss_dssp HHHHHHHHHHCC
T ss_pred HHHHHHHHHhcC
Confidence 345566666653
No 154
>3o5c_A Cytochrome C551 peroxidase; diheme cytochrome, hydrogen peroxide, oxidoreductase; HET: HEM; 1.80A {Shewanella oneidensis}
Probab=34.88 E-value=7.6 Score=34.87 Aligned_cols=18 Identities=17% Similarity=0.119 Sum_probs=13.1
Q ss_pred eccCCCCChhHHHHHHHH
Q 027523 189 LKEGRFPGEIELKDLVAK 206 (222)
Q Consensus 189 l~~grfP~~~EL~~~I~~ 206 (222)
+-+|++++.+|.++....
T Consensus 251 ~HdG~~~tL~evv~~~~~ 268 (320)
T 3o5c_A 251 FHDGSVWTLEEAVNTMAD 268 (320)
T ss_dssp TTTTCBCSHHHHHHHHHH
T ss_pred HcCCCcCcHHHHHHHhcc
Confidence 456888888888777654
No 155
>1vkh_A Putative serine hydrolase; structural genomics, joint center structural genomics, JCSG, protein structure initiative, PS hydrolase; HET: MSE; 1.85A {Saccharomyces cerevisiae} SCOP: c.69.1.32
Probab=34.74 E-value=72 Score=25.16 Aligned_cols=12 Identities=0% Similarity=-0.069 Sum_probs=8.0
Q ss_pred chhhHHHHHHHH
Q 027523 78 YRGTAITMKRML 89 (222)
Q Consensus 78 Y~~~f~~lk~~L 89 (222)
....|..+.+.|
T Consensus 58 ~~~~~~~~~~~L 69 (273)
T 1vkh_A 58 TPNDFNQLANTI 69 (273)
T ss_dssp CGGGGHHHHHHH
T ss_pred ChHHHHHHHHHH
Confidence 355677777777
No 156
>2pvf_A Fibroblast growth factor receptor 2; kinase domain fold consisting of N- and C-lobes, transferase; HET: PTR ACP; 1.80A {Homo sapiens} PDB: 3cly_A* 2pzr_A* 2pzp_A* 2pvy_A* 2pz5_A* 2q0b_A* 2pwl_A* 2py3_A* 3ri1_A* 1gjo_A 1oec_A* 3b2t_A* 3gql_A* 3gqi_A* 1fgk_A 1fgi_A* 1agw_A 2fgi_A* 3js2_A* 3ky2_A ...
Probab=34.72 E-value=52 Score=27.35 Aligned_cols=14 Identities=21% Similarity=0.228 Sum_probs=7.8
Q ss_pred CChhHHHHHHHHHh
Q 027523 195 PGEIELKDLVAKQL 208 (222)
Q Consensus 195 P~~~EL~~~I~~~l 208 (222)
|+.+|+.+.+++.+
T Consensus 304 ps~~ell~~L~~l~ 317 (334)
T 2pvf_A 304 PTFKQLVEDLDRIL 317 (334)
T ss_dssp CCHHHHHHHHHHHH
T ss_pred cCHHHHHHHHHHHH
Confidence 55555555555544
No 157
>2kan_A Uncharacterized protein AR3433A; ubiquitin fold, alpha+beta, structural genomics, protein structure initiative; NMR {Arabidopsis thaliana}
Probab=34.50 E-value=37 Score=24.33 Aligned_cols=23 Identities=9% Similarity=0.056 Sum_probs=15.6
Q ss_pred EEEEEecCCCCchhhHHHHHHHHHHhC
Q 027523 67 TVNINFCASCSYRGTAITMKRMLETQF 93 (222)
Q Consensus 67 tV~i~YC~sCgY~~~f~~lk~~L~~~y 93 (222)
+..+..-. ..+-.++|+.|+++.
T Consensus 26 ~~~l~v~~----~~TV~~LK~~I~~~~ 48 (94)
T 2kan_A 26 QFTVEVDR----TETVSSLKDKIHIVE 48 (94)
T ss_dssp EEEEEECT----TCBHHHHHHHHHHHS
T ss_pred EEEEEECC----CCcHHHHHHHHHHHH
Confidence 55554333 457789999999884
No 158
>1k7k_A Hypothetical protein YGGV; MAD, His-TAG, large groove, disordered Se-Met, structural genomics, putative ribosomal protein, PSI; HET: MSE; 1.50A {Escherichia coli} SCOP: c.51.4.1 PDB: 2q16_A* 2pyu_A*
Probab=34.35 E-value=37 Score=29.03 Aligned_cols=50 Identities=14% Similarity=0.254 Sum_probs=31.1
Q ss_pred EEEecCCCCchhhHHHHHHHHHHhCCCceeecc-cCCC--------ChHHHHHHhhhhHHHHH
Q 027523 69 NINFCASCSYRGTAITMKRMLETQFPGIDVVLA-NYPP--------PLPKRLLAKVVPAVQIG 122 (222)
Q Consensus 69 ~i~YC~sCgY~~~f~~lk~~L~~~yP~i~V~G~-nYPp--------p~~k~~Lak~v~~~q~~ 122 (222)
+|.+.++- ++...|++++|... +++|... .++. ++--..+-|+-.+.+..
T Consensus 25 ~iv~AT~N--~~Kl~E~~~iL~~~--~iev~~~~d~~~~ei~E~g~Tf~eNA~~KA~~aa~~~ 83 (221)
T 1k7k_A 25 KVVLATGN--VGKVRELASLLSDF--GLDIVAQTDLGVDSAEETGLTFIENAILKARHAAKVT 83 (221)
T ss_dssp EEEESCCC--HHHHHHHHHHHGGG--TEEEEETTTTTCCCCCCCCSSHHHHHHHHHHHHHHHH
T ss_pred EEEEEcCC--HHHHHHHHHHhhhc--CeEEEEhhhcCCCCcccCCCCHHHHHHHHHHHHHHHH
Confidence 57787766 89999999999753 4555432 2322 23445566666666554
No 159
>1qwz_A NPQTN specific sortase B; beta barrel, transpeptidase, hydrolase; 1.75A {Staphylococcus aureus} SCOP: b.100.1.1 PDB: 1qxa_A 1ng5_A 1qx6_A*
Probab=34.29 E-value=13 Score=31.70 Aligned_cols=14 Identities=7% Similarity=0.418 Sum_probs=7.4
Q ss_pred CCChhHHHHHHHHH
Q 027523 194 FPGEIELKDLVAKQ 207 (222)
Q Consensus 194 fP~~~EL~~~I~~~ 207 (222)
|-+.+|..+.|++.
T Consensus 177 f~~~~~~~~~l~~i 190 (235)
T 1qwz_A 177 FENDQDYQQFLDET 190 (235)
T ss_dssp CSSHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHH
Confidence 44456665555543
No 160
>2dw3_A Intrinsic membrane protein PUFX; quinone exchange, photosynthesis, light- harvesting, GXXXG motif, dimerization; NMR {Rhodobacter sphaeroides} PDB: 2ita_A
Probab=34.22 E-value=58 Score=23.86 Aligned_cols=25 Identities=12% Similarity=0.139 Sum_probs=18.3
Q ss_pred HHHHHHHHHHHhhhhhhccCCCCCC
Q 027523 6 ILLLGLPLFLLCSDLLNLFTPPPPP 30 (222)
Q Consensus 6 ~~~~g~~~~~~~~d~~~~f~~~~~~ 30 (222)
+..+|+-+++.+.=++.++=|....
T Consensus 35 v~f~~~~~~lv~l~~iG~~LPE~Sr 59 (77)
T 2dw3_A 35 GVFFGTLLLIGFFRVVGRMLPIQEN 59 (77)
T ss_dssp HHHHHHHHHHHHHHHHHHCTTTTCS
T ss_pred HHHHHHHHHHHHHHHHHHhCchhcc
Confidence 4567777778888888888776544
No 161
>2ivd_A PPO, PPOX, protoporphyrinogen oxidase; porphyrin biosynthesis, chlorophyll biosynthesis, oxidoreductase, HAEM biosynthesis, heme biosynthesis; HET: ACJ FAD TWN; 2.3A {Myxococcus xanthus} SCOP: c.3.1.2 d.16.1.5 PDB: 2ive_A*
Probab=33.94 E-value=8.6 Score=33.99 Aligned_cols=7 Identities=57% Similarity=1.123 Sum_probs=0.0
Q ss_pred CCCCCCC
Q 027523 35 ASHHHHK 41 (222)
Q Consensus 35 ~~~~~~~ 41 (222)
|||||||
T Consensus 3 ~~~~~~~ 9 (478)
T 2ivd_A 3 HHHHHHH 9 (478)
T ss_dssp -------
T ss_pred ccccccc
Confidence 3444333
No 162
>3plu_A Ubiquitin-like modifier HUB1; ubiquitin-like, HUB-1, SNU66, peptide binding protein; 1.40A {Saccharomyces cerevisiae} PDB: 3plv_A 1m94_A 1p0r_A
Probab=33.85 E-value=18 Score=27.17 Aligned_cols=20 Identities=20% Similarity=0.316 Sum_probs=14.9
Q ss_pred CCCCchhhHHHHHHHHHHhC
Q 027523 74 ASCSYRGTAITMKRMLETQF 93 (222)
Q Consensus 74 ~sCgY~~~f~~lk~~L~~~y 93 (222)
+.|.-..+=.++|+.|+++.
T Consensus 36 v~v~p~DTI~~LK~~I~~k~ 55 (93)
T 3plu_A 36 VKCLGEDSVGDFKKVLSLQI 55 (93)
T ss_dssp EEEETTSBHHHHHHHHHHHH
T ss_pred EEECCcCHHHHHHHHHHHHh
Confidence 34555677889999998874
No 163
>2p5s_A RAS and EF-hand domain containing; G-protein, RAB, GDP, structural genomics, SGC, structural genomics consortium, signaling protein; HET: GDP; 2.15A {Homo sapiens}
Probab=33.72 E-value=11 Score=29.10 Aligned_cols=11 Identities=9% Similarity=0.168 Sum_probs=5.0
Q ss_pred EEEEecCCCCc
Q 027523 68 VNINFCASCSY 78 (222)
Q Consensus 68 V~i~YC~sCgY 78 (222)
++|..+...|-
T Consensus 29 ~ki~v~G~~~~ 39 (199)
T 2p5s_A 29 YKIVLAGDAAV 39 (199)
T ss_dssp EEEEEESSTTS
T ss_pred eEEEEECcCCC
Confidence 44444444443
No 164
>2qrj_A Saccharopine dehydrogenase, NAD+, L-lysine- forming; sulfate, rossmann fold, alpha-aminoadipate pathway, fungal lysine biosynthesis; 1.60A {Saccharomyces cerevisiae} PDB: 2qrk_A* 2qrl_A* 2q99_A 3ugk_A 3uh1_A* 3uha_A*
Probab=33.60 E-value=8.8 Score=35.54 Aligned_cols=17 Identities=6% Similarity=0.219 Sum_probs=11.6
Q ss_pred CCccEEEEEecCCCCch
Q 027523 63 GYGSTVNINFCASCSYR 79 (222)
Q Consensus 63 ~~g~tV~i~YC~sCgY~ 79 (222)
..|-+|.|+-+...+|.
T Consensus 52 ~~G~~V~VE~gA~a~f~ 68 (394)
T 2qrj_A 52 AKGFKIYVEDSPQSTFN 68 (394)
T ss_dssp HTTCEEEEECCSSCSSC
T ss_pred hCCCEEEEeCCCCCCCC
Confidence 35678888877755555
No 165
>2kdb_A Homocysteine-responsive endoplasmic reticulum- resident ubiquitin-like domain member...; UBL domain, membrane, polymorphism, transmembrane; NMR {Homo sapiens}
Probab=33.11 E-value=28 Score=25.70 Aligned_cols=19 Identities=21% Similarity=0.233 Sum_probs=14.7
Q ss_pred chhhHHHHHHHHHHhCCCc
Q 027523 78 YRGTAITMKRMLETQFPGI 96 (222)
Q Consensus 78 Y~~~f~~lk~~L~~~yP~i 96 (222)
-..+-.++|+.|+++.|+.
T Consensus 44 ~~~TV~~LK~~I~~~~~g~ 62 (99)
T 2kdb_A 44 LNWTVGKLKTHLSNVYPSK 62 (99)
T ss_dssp TTSBHHHHHHHHHHHSTTC
T ss_pred CCCHHHHHHHHHHHHhcCC
Confidence 3457789999999987654
No 166
>1z0s_A Probable inorganic polyphosphate/ATP-NAD kinase; ATP-binding, structural genomics, NADP, PSI, protein structure initiative; HET: ATP; 1.70A {Archaeoglobus fulgidus} SCOP: e.52.1.1 PDB: 1z0u_A* 1z0z_A* 1suw_A*
Probab=33.03 E-value=35 Score=29.88 Aligned_cols=21 Identities=10% Similarity=-0.132 Sum_probs=14.7
Q ss_pred CCcEEEEEECCeEeEeeeccC
Q 027523 172 SSGAFEVYCNDDLVFSKLKEG 192 (222)
Q Consensus 172 stGaFEV~vng~LV~SKl~~g 192 (222)
+.=.|||++||+.+.+-..+|
T Consensus 155 ~~~~~~v~idg~~~~~~~~DG 175 (278)
T 1z0s_A 155 KMIDVALRVDGVEVDRIRCDG 175 (278)
T ss_dssp CCEEEEEEETTEEEEEEEESE
T ss_pred cEEEEEEEECCEEEEEEecCe
Confidence 355689999999876654443
No 167
>1wc3_A Adenylate cyclase; soluble adenylyl cyclase, CAMP signaling, lyase; HET: APC; 1.9A {Spirulina platensis} SCOP: d.58.29.1 PDB: 1wc0_A* 1wc4_A* 1wc5_A* 2bw7_A* 1wc1_A* 1wc6_A*
Probab=32.89 E-value=23 Score=28.85 Aligned_cols=15 Identities=13% Similarity=0.268 Sum_probs=11.7
Q ss_pred EEEEEecCCCCchhh
Q 027523 67 TVNINFCASCSYRGT 81 (222)
Q Consensus 67 tV~i~YC~sCgY~~~ 81 (222)
.+.|.||.-+||..-
T Consensus 27 ~vtvlF~DI~gfT~l 41 (219)
T 1wc3_A 27 LITILFSDIVGFTRM 41 (219)
T ss_dssp EEEEEEEEEESHHHH
T ss_pred EEEEEEEEecChHHH
Confidence 688999988887553
No 168
>2lt9_A Protein SLC8A3; NCX, NCX3, NACA exchanger, CBD, CBD2, calcium binding domain binding protein; NMR {Mus musculus}
Probab=38.79 E-value=9.4 Score=31.11 Aligned_cols=9 Identities=33% Similarity=0.412 Sum_probs=4.3
Q ss_pred cEEEEEecC
Q 027523 66 STVNINFCA 74 (222)
Q Consensus 66 ~tV~i~YC~ 74 (222)
.++.+.|-+
T Consensus 42 g~vsV~y~T 50 (157)
T 2lt9_A 42 GTVIVPFRT 50 (157)
Confidence 345555444
No 169
>3s94_A LRP-6, low-density lipoprotein receptor-related protein; WNT, LDL receptor-like protein, dickko YWTD B-propeller, signaling protein; HET: NAG; 2.80A {Homo sapiens} PDB: 4dg6_A*
Probab=32.49 E-value=9.9 Score=36.17 Aligned_cols=7 Identities=57% Similarity=1.123 Sum_probs=0.0
Q ss_pred CCCCCCC
Q 027523 35 ASHHHHK 41 (222)
Q Consensus 35 ~~~~~~~ 41 (222)
|||||||
T Consensus 2 ~~~~~~~ 8 (619)
T 3s94_A 2 HHHHHHH 8 (619)
T ss_dssp -------
T ss_pred Ccccccc
Confidence 3334444
No 170
>1bpv_A Titin, A71, connectin; fibronectin type III; NMR {Homo sapiens} SCOP: b.1.2.1
Probab=32.37 E-value=16 Score=26.51 Aligned_cols=6 Identities=0% Similarity=-0.297 Sum_probs=2.6
Q ss_pred EEEEec
Q 027523 68 VNINFC 73 (222)
Q Consensus 68 V~i~YC 73 (222)
..|+||
T Consensus 45 Y~Ve~~ 50 (112)
T 1bpv_A 45 YIVEKR 50 (112)
T ss_dssp CEEEEE
T ss_pred EEEEEE
Confidence 344444
No 171
>3b0g_A NII3, nitrite reductase; siroheme, Fe4S4 binding protein, oxidoreductase; HET: SRM; 1.25A {Nicotiana tabacum} PDB: 3vkp_A* 3vkq_A* 3vkr_A* 3vks_A* 3vkt_A* 3b0n_A* 3b0m_A* 3b0j_A* 3b0l_A* 3b0h_A*
Probab=32.33 E-value=9.5 Score=36.75 Aligned_cols=6 Identities=17% Similarity=-0.020 Sum_probs=2.6
Q ss_pred HHHHHH
Q 027523 82 AITMKR 87 (222)
Q Consensus 82 f~~lk~ 87 (222)
.|++|+
T Consensus 76 ~E~~K~ 81 (591)
T 3b0g_A 76 QEKVKI 81 (591)
T ss_dssp HHHHHH
T ss_pred hhhhhh
Confidence 344443
No 172
>2f5x_A BUGD; periplasmic binding protein, transport protein; 1.72A {Bordetella pertussis tohama I}
Probab=32.00 E-value=40 Score=29.34 Aligned_cols=23 Identities=22% Similarity=0.358 Sum_probs=12.8
Q ss_pred hhhHHHHHHHHHHhCCCceeeccc
Q 027523 79 RGTAITMKRMLETQFPGIDVVLAN 102 (222)
Q Consensus 79 ~~~f~~lk~~L~~~yP~i~V~G~n 102 (222)
-.....+.+.|+++. +..|+=+|
T Consensus 32 D~~aR~la~~l~~~l-g~~vvV~N 54 (312)
T 2f5x_A 32 DNVARSLAESMRPTL-GETVVVEN 54 (312)
T ss_dssp HHHHHHHHHHHHHHH-SSCEEEEE
T ss_pred HHHHHHHHHHHHHHh-CCCEEEEe
Confidence 334556677777776 44444344
No 173
>3iot_A Maltose-binding protein, huntingtin fusion protei; HTT-EX1, HD, sugar transport, transport, apoptos disease mutation, nucleus; 3.50A {Escherichia coli k-12} PDB: 3io6_A 3io4_A 3ior_A 3iou_A 3iov_A 3iow_A
Probab=31.87 E-value=9.8 Score=33.73 Aligned_cols=7 Identities=43% Similarity=0.923 Sum_probs=0.0
Q ss_pred cccCCcc
Q 027523 60 GGIGYGS 66 (222)
Q Consensus 60 ~~~~~g~ 66 (222)
|..|.|.
T Consensus 438 ~~~~~~~ 444 (449)
T 3iot_A 438 GKLGTGR 444 (449)
T ss_dssp -------
T ss_pred CccccCc
Confidence 3334443
No 174
>2bgs_A Aldose reductase; holoenzyme, aldo/keto reductase, oxidoreductase; HET: NDP; 1.64A {Hordeum vulgare} PDB: 2bgq_A* 2vdg_A*
Probab=31.84 E-value=9.8 Score=33.80 Aligned_cols=11 Identities=18% Similarity=0.317 Sum_probs=5.6
Q ss_pred hhHHHHHHHHH
Q 027523 80 GTAITMKRMLE 90 (222)
Q Consensus 80 ~~f~~lk~~L~ 90 (222)
.....++.+++
T Consensus 61 ~~~~~l~~Al~ 71 (344)
T 2bgs_A 61 DTAHSVRTAIT 71 (344)
T ss_dssp GHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 34445555555
No 175
>4b1m_A Levanase; hydrolase, CBM66; HET: FRU; 1.10A {Bacillus subtilis} PDB: 4b1l_A* 4azz_A
Probab=31.69 E-value=9.9 Score=30.64 Aligned_cols=19 Identities=26% Similarity=0.552 Sum_probs=15.4
Q ss_pred CCcEEEEEECCeEeEeeec
Q 027523 172 SSGAFEVYCNDDLVFSKLK 190 (222)
Q Consensus 172 stGaFEV~vng~LV~SKl~ 190 (222)
.++..+||+||++|.+-..
T Consensus 141 ~G~~i~~~vnG~~v~~~~D 159 (185)
T 4b1m_A 141 EGDRFKIYLDDRLVIDAHD 159 (185)
T ss_dssp ETTEEEEEETTEEEEEEEC
T ss_pred ECCEEEEEECCEEEEEEEC
Confidence 5788999999999887543
No 176
>1jak_A Beta-N-acetylhexosaminidase; glycoside hydrolase, family 20, substrate-assisted catalysis, alpha/beta barrel, isofagomin inhibitor complex; HET: IFG; 1.75A {Streptomyces plicatus} SCOP: c.1.8.6 d.92.2.1 PDB: 1hp4_A* 1hp5_A* 1m01_A* 1m04_A* 1m03_A*
Probab=31.63 E-value=20 Score=33.91 Aligned_cols=15 Identities=27% Similarity=0.379 Sum_probs=10.1
Q ss_pred CCCChhHHHHHHHHH
Q 027523 193 RFPGEIELKDLVAKQ 207 (222)
Q Consensus 193 rfP~~~EL~~~I~~~ 207 (222)
.|-+.++|++.|+..
T Consensus 169 ~f~~~~~ik~~id~m 183 (512)
T 1jak_A 169 HFFGVDEVKRYIDRV 183 (512)
T ss_dssp SCCCHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHH
Confidence 466677777777653
No 177
>4aq4_A SN-glycerol-3-phosphate-binding periplasmic prote; diester-binding protein; HET: G3P; 1.80A {Escherichia coli}
Probab=31.60 E-value=90 Score=26.27 Aligned_cols=47 Identities=13% Similarity=0.116 Sum_probs=29.1
Q ss_pred EEEecCCC-C-chhhHHHHHHHHHHhCCCceeecccCCCChHHHHHHhhhh
Q 027523 69 NINFCASC-S-YRGTAITMKRMLETQFPGIDVVLANYPPPLPKRLLAKVVP 117 (222)
Q Consensus 69 ~i~YC~sC-g-Y~~~f~~lk~~L~~~yP~i~V~G~nYPpp~~k~~Lak~v~ 117 (222)
+|.|+.+= | ....++++.+.-++++|+++|+-... +-+...+.+++.
T Consensus 7 TItfW~~~~g~~~~~~~~~i~~F~~~~p~i~V~~~~~--~~~~~~~~~~~a 55 (419)
T 4aq4_A 7 TIPFWHSMEGELGKEVDSLAQRFNAENPDYKIVPTYK--GNYEQNLSAGIA 55 (419)
T ss_dssp EEEEEECCCTHHHHHHHHHHHHHHHHCTTEEEEEEEC--SSHHHHHHHHHH
T ss_pred EEEEcCCCCchHHHHHHHHHHHHHHHCcCeEEEEEeC--CCHHHHHHHHHH
Confidence 55666432 2 44556677777788999999876533 235566666543
No 178
>4iiu_A 3-oxoacyl-[acyl-carrier protein] reductase; structural genomics, center for structural genomics of infec diseases, csgid; HET: NAP; 2.10A {Escherichia coli} PDB: 4iiv_A*
Probab=31.53 E-value=96 Score=25.14 Aligned_cols=20 Identities=15% Similarity=0.150 Sum_probs=13.4
Q ss_pred cCCCCChhHHHHHHHHHhcC
Q 027523 191 EGRFPGEIELKDLVAKQLAS 210 (222)
Q Consensus 191 ~grfP~~~EL~~~I~~~l~~ 210 (222)
.+|+.+++|+.+.+.-.+.+
T Consensus 231 ~~~~~~~edva~~~~~L~s~ 250 (267)
T 4iiu_A 231 MKRMGQAEEVAGLASYLMSD 250 (267)
T ss_dssp TCSCBCHHHHHHHHHHHHSG
T ss_pred CCCCcCHHHHHHHHHHHhCC
Confidence 45666777777777766643
No 179
>1hxv_A Trigger factor; FKBP fold, ppiase, chaperone; NMR {Mycoplasma genitalium} SCOP: d.26.1.1
Probab=30.57 E-value=23 Score=26.55 Aligned_cols=17 Identities=18% Similarity=0.294 Sum_probs=12.0
Q ss_pred cccCCccEEEEEecCCC
Q 027523 60 GGIGYGSTVNINFCASC 76 (222)
Q Consensus 60 ~~~~~g~tV~i~YC~sC 76 (222)
..+..|.+|.+.|-...
T Consensus 28 ~~~~~gD~V~v~Y~g~~ 44 (113)
T 1hxv_A 28 KKLANGDIAIIDFTGIV 44 (113)
T ss_dssp -CCCSSEEEEEEEEEEE
T ss_pred CCCCCCCEEEEEEEEEE
Confidence 35677889999987643
No 180
>2qf7_A Pyruvate carboxylase protein; multi-domain, multi-functional, biotin-dependent, ligase; HET: KCX COA AGS; 2.00A {Rhizobium etli} PDB: 3tw6_A* 3tw7_A*
Probab=30.30 E-value=11 Score=39.26 Aligned_cols=18 Identities=6% Similarity=-0.307 Sum_probs=10.5
Q ss_pred HHHHHHHHHhCCCceeec
Q 027523 83 ITMKRMLETQFPGIDVVL 100 (222)
Q Consensus 83 ~~lk~~L~~~yP~i~V~G 100 (222)
+.+.+.+++.=.+..+-|
T Consensus 83 ~~I~~~a~~~~iD~V~pg 100 (1165)
T 2qf7_A 83 DEVIRVAKLSGADAIHPG 100 (1165)
T ss_dssp HHHHHHHHHHTCSEEECC
T ss_pred HHHHHHHHHhCCCEEEEC
Confidence 556666666656654443
No 181
>3nk4_C ZONA pellucida 3; fertilization, oocyte, egg coat, vitelline E ZP domain, ZP module, egg-sperm interaction, species-specif recognition, speciation; HET: A2G FLC; 2.00A {Gallus gallus} PDB: 3nk3_C*
Probab=30.29 E-value=19 Score=21.63 Aligned_cols=7 Identities=43% Similarity=0.814 Sum_probs=2.8
Q ss_pred CCCCCCC
Q 027523 33 KSASHHH 39 (222)
Q Consensus 33 ~~~~~~~ 39 (222)
+.|||||
T Consensus 23 adhhhhh 29 (30)
T 3nk4_C 23 ADHHHHH 29 (30)
T ss_dssp SCTTCCC
T ss_pred ccccccC
Confidence 3344433
No 182
>3rdd_A Peptidyl-prolyl CIS-trans isomerase A; beta barrel, cytosolic, inhibito isomerase-isomerase inhibitor complex; HET: EA4; 2.14A {Homo sapiens}
Probab=30.25 E-value=52 Score=26.92 Aligned_cols=29 Identities=24% Similarity=0.549 Sum_probs=17.5
Q ss_pred CcEEEEEECC-------eEeEeeeccCCCCChhHHHHHHHH
Q 027523 173 SGAFEVYCND-------DLVFSKLKEGRFPGEIELKDLVAK 206 (222)
Q Consensus 173 tGaFEV~vng-------~LV~SKl~~grfP~~~EL~~~I~~ 206 (222)
+.-|=|.+.+ -.||=|..+| -|+++.|.+
T Consensus 128 gSQFfIt~~~~~~LDg~~tVFG~Vv~G-----~dvv~~I~~ 163 (184)
T 3rdd_A 128 GSQFFICTAKTEWLDGKHVVFGKVKEG-----MNIVEAMER 163 (184)
T ss_dssp SSCEEEESSCCGGGTTTSCEEEEEEEC-----HHHHHHHHT
T ss_pred ccEEEEEeCCchhhCCCceEEEEEecC-----HHHHHHHHh
Confidence 3446676543 3577777654 467777754
No 183
>1p99_A Hypothetical protein PG110; structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; 1.70A {Staphylococcus aureus subsp} SCOP: c.94.1.1
Probab=30.14 E-value=60 Score=27.98 Aligned_cols=35 Identities=17% Similarity=0.282 Sum_probs=20.7
Q ss_pred cEEEEEecCCCCchhhHHHHHHHHHHhCCCceeecccCC
Q 027523 66 STVNINFCASCSYRGTAITMKRMLETQFPGIDVVLANYP 104 (222)
Q Consensus 66 ~tV~i~YC~sCgY~~~f~~lk~~L~~~yP~i~V~G~nYP 104 (222)
.+|+|-|...+ ...+..+++.++++ |++|+-..+.
T Consensus 39 ~~i~IG~~~~~--~~~~~~~~~~~~~~--G~~Ve~~~f~ 73 (295)
T 1p99_A 39 KKVTIGVASND--TKAWEKVKELAKKD--DIDVEIKHFS 73 (295)
T ss_dssp -CEEEEESSSC--CHHHHHHHHHHGGG--TCCEEEEECS
T ss_pred CeEEEEEeCCc--HHHHHHHHHHHHHc--CCeEEEEEeC
Confidence 36888887332 23455566777766 7766554443
No 184
>2lwx_A Zuotin; J-protein, molecular chaperone, pleiotropic drug resistance, chaperone; NMR {Saccharomyces cerevisiae}
Probab=29.91 E-value=11 Score=29.36 Aligned_cols=10 Identities=20% Similarity=0.139 Sum_probs=1.3
Q ss_pred CCCCCCCCcc
Q 027523 48 NLTPDFPSQK 57 (222)
Q Consensus 48 ~~~~~~~~~~ 57 (222)
++.+-|-+.|
T Consensus 14 ~~~~~~eaak 23 (108)
T 2lwx_A 14 SENLYFQGSK 23 (108)
T ss_dssp -------CCH
T ss_pred chhHHHHHHH
Confidence 3444444444
No 185
>4egs_A Ribose 5-phosphate isomerase RPIB; tyrosine phosphatase, dephosphorylation, hydrolase; 2.30A {Thermoanaerobacter tengcongensis}
Probab=29.85 E-value=50 Score=26.69 Aligned_cols=33 Identities=9% Similarity=0.192 Sum_probs=18.2
Q ss_pred EEEEEe-cCCCCchhhHHH-H-HHHHHHhCCCceee
Q 027523 67 TVNINF-CASCSYRGTAIT-M-KRMLETQFPGIDVV 99 (222)
Q Consensus 67 tV~i~Y-C~sCgY~~~f~~-l-k~~L~~~yP~i~V~ 99 (222)
+++|.| |.....|...-| + ++.+++.-++++|.
T Consensus 34 ~mkVLFVC~GNiCRSpmAE~l~r~~~~~~g~~~~v~ 69 (180)
T 4egs_A 34 SMRVLFVCTGNTCRSPMAEGIFNAKSKALGKDWEAK 69 (180)
T ss_dssp CCEEEEEESSSSSHHHHHHHHHHHHHHHTTCCCEEE
T ss_pred CeEEEEEeCCCcccCHHHHHHHHHHHHhcCCceEEE
Confidence 555554 766655665544 3 33444444667765
No 186
>1elj_A Maltodextrin-binding protein; protein-carbohydrate complex, maltose binding protein, MBP fold, ABC transporter fold, thermophilic protein; HET: CME GLC; 1.85A {Pyrococcus furiosus} SCOP: c.94.1.1
Probab=29.70 E-value=61 Score=27.48 Aligned_cols=38 Identities=8% Similarity=0.129 Sum_probs=26.7
Q ss_pred EEEEEecCCC--CchhhHHHHHHHHHHhCCCceeecccCC
Q 027523 67 TVNINFCASC--SYRGTAITMKRMLETQFPGIDVVLANYP 104 (222)
Q Consensus 67 tV~i~YC~sC--gY~~~f~~lk~~L~~~yP~i~V~G~nYP 104 (222)
+++|.++... .....++++.+..++++|++.|+-+.++
T Consensus 5 ~~~l~~W~~~~~~~~~~~~~~i~~F~~~~p~i~V~~~~~~ 44 (381)
T 1elj_A 5 EGKVVIWHAMQPNELEVFQSLAEEYMALCPEVEIVFEQKP 44 (381)
T ss_dssp CEEEEEEECCCHHHHHHHHHHHHHHHHHCTTEEEEEEECT
T ss_pred ceEEEEEecCCcchHHHHHHHHHHHHHHCCCcEEEEEECC
Confidence 4556666543 2345667777778899999999887775
No 187
>3a4u_B Multiple coagulation factor deficiency protein 2; lectin, ergic, ER, golgi, transport, disulfide bond, endopla reticulum, ER-golgi transport; 1.84A {Homo sapiens} PDB: 2vrg_A 3lcp_C
Probab=29.60 E-value=11 Score=28.42 Aligned_cols=15 Identities=20% Similarity=0.259 Sum_probs=7.3
Q ss_pred CCCCChhHHHHHHHH
Q 027523 192 GRFPGEIELKDLVAK 206 (222)
Q Consensus 192 grfP~~~EL~~~I~~ 206 (222)
|...+.+|+.++++.
T Consensus 106 g~~~s~~e~~~~~~~ 120 (143)
T 3a4u_B 106 APLMSEDELINIIDG 120 (143)
T ss_dssp ---CCHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHH
Confidence 344566677666643
No 188
>2uvj_A TOGB, ABC type periplasmic sugar-binding protein; periplasmic binding protein, pectin degradation, trigalacturonic acid; HET: ADA; 1.8A {Yersinia enterocolitica} PDB: 2uvi_A* 2uvh_A* 2uvg_A 3u1o_A
Probab=29.51 E-value=63 Score=27.59 Aligned_cols=41 Identities=10% Similarity=0.109 Sum_probs=28.8
Q ss_pred ccEEEEEecCCCCchhhHHHHHHHHHHhCCCceeecccCCC
Q 027523 65 GSTVNINFCASCSYRGTAITMKRMLETQFPGIDVVLANYPP 105 (222)
Q Consensus 65 g~tV~i~YC~sCgY~~~f~~lk~~L~~~yP~i~V~G~nYPp 105 (222)
..||+|.++.+=.....++++-+..++++|++.|+-+.+|-
T Consensus 5 ~~~l~i~~W~~~~~~~~~~~~~~~f~~~~p~i~V~~~~~~~ 45 (408)
T 2uvj_A 5 EVNLRMSWWGGNGRHQVTLKALEEFHKQHPNINVKAEYTGW 45 (408)
T ss_dssp CEEEEEEEECCHHHHHHHHHHHHHHHHHCTTEEEEEEEECS
T ss_pred ceEEEEEEECCcchHHHHHHHHHHHHHHCCCcEEEEEeCCH
Confidence 34788888865223455677777788899999888766653
No 189
>3k9f_C DNA topoisomerase 4 subunit B; quinolone, topoisomerase, protein-DNA cleavage complex; HET: DNA LFX; 2.90A {Streptococcus pneumoniae} PDB: 3fof_C* 3foe_C* 3ksa_C* 3ksb_C* 3ltn_C* 3rad_C* 3rae_C* 3raf_C*
Probab=29.39 E-value=11 Score=33.42 Aligned_cols=21 Identities=14% Similarity=0.241 Sum_probs=12.9
Q ss_pred HHHHHHhhhhHHHHHHHHHHh
Q 027523 108 PKRLLAKVVPAVQIGVIGIVV 128 (222)
Q Consensus 108 ~k~~Lak~v~~~q~~~i~~i~ 128 (222)
++.-+.|++.-.++..|..++
T Consensus 84 ~ka~~~ki~~N~Ei~~ii~al 104 (268)
T 3k9f_C 84 AKAKMADILKNEEINTMIYTI 104 (268)
T ss_dssp TSSCHHHHHTCHHHHHHHHHH
T ss_pred hcCCHHHHhhCHHHHHHHHHh
Confidence 444566677767776666554
No 190
>2l8s_A Integrin alpha-1; transmembrane region, detergent micelle, CE adhesion; NMR {Homo sapiens}
Probab=29.28 E-value=54 Score=22.43 Aligned_cols=10 Identities=20% Similarity=0.517 Sum_probs=6.6
Q ss_pred hhccCCCCCC
Q 027523 21 LNLFTPPPPP 30 (222)
Q Consensus 21 ~~~f~~~~~~ 30 (222)
...|+-..++
T Consensus 33 ~GFFKR~~~~ 42 (54)
T 2l8s_A 33 IGFFKRPLKK 42 (54)
T ss_dssp HHHTTSCCSC
T ss_pred cCcccCCCcc
Confidence 3678877665
No 191
>3d8t_A Uroporphyrinogen-III synthase; heme biosynthesis, lyase; 1.60A {Thermus thermophilus} PDB: 3d8r_A 3d8s_A 3d8n_A
Probab=29.28 E-value=66 Score=27.03 Aligned_cols=19 Identities=21% Similarity=0.174 Sum_probs=14.0
Q ss_pred HHHHHHHHHHh------CCCceeec
Q 027523 82 AITMKRMLETQ------FPGIDVVL 100 (222)
Q Consensus 82 f~~lk~~L~~~------yP~i~V~G 100 (222)
.+++.+.|++. +|=++++.
T Consensus 44 ~~~l~~~L~~~G~~v~~~P~i~i~~ 68 (286)
T 3d8t_A 44 KEEFKALAEKLGFTPLLFPVQATEK 68 (286)
T ss_dssp HHHHHHHHHHHTCEEEECCCEEEEE
T ss_pred hHHHHHHHHHCCCeEEEeeeEEEec
Confidence 68888888877 46666664
No 192
>4e4j_A Arginine deiminase; L-arginine, L-citrulline, NH3, hydrolase; 2.30A {Mycoplasma penetrans}
Probab=29.24 E-value=11 Score=34.48 Aligned_cols=17 Identities=24% Similarity=0.425 Sum_probs=12.4
Q ss_pred hhHHHHHHHHHHhCCCcee
Q 027523 80 GTAITMKRMLETQFPGIDV 98 (222)
Q Consensus 80 ~~f~~lk~~L~~~yP~i~V 98 (222)
+..+++.+.|+++ |++|
T Consensus 81 ~EHd~f~~~Lr~~--GveV 97 (433)
T 4e4j_A 81 EEHKGFVKILQNN--GIKV 97 (433)
T ss_dssp HHHHHHHHHHHTT--TCEE
T ss_pred HHHHHHHHHHHHC--CCEE
Confidence 4557788888887 7765
No 193
>3mdu_A N-formimino-L-glutamate iminohydrolase; amonohydralase family, N-formimino-L-glutamate iminohydrolas guanidino-L-glutamate; HET: NGQ; 1.40A {Pseudomonas aeruginosa} PDB: 3mdw_A*
Probab=29.19 E-value=43 Score=29.69 Aligned_cols=36 Identities=19% Similarity=0.254 Sum_probs=29.7
Q ss_pred CCcEEEEEECCeEeEeeeccCCCCChhHHHHHHHHHhcC
Q 027523 172 SSGAFEVYCNDDLVFSKLKEGRFPGEIELKDLVAKQLAS 210 (222)
Q Consensus 172 stGaFEV~vng~LV~SKl~~grfP~~~EL~~~I~~~l~~ 210 (222)
.+..=.|++||+.|+. .|++.+.+++.+..++....
T Consensus 415 ~~~v~~v~v~G~~v~~---~g~~~~~~~i~~~~~~~~~~ 450 (453)
T 3mdu_A 415 DRQVRDVMVAGRWVVR---DGRHAGEERSARAFVQVLGE 450 (453)
T ss_dssp GGGEEEEEETTEEEEB---TTBCTTHHHHHHHHHHHHHH
T ss_pred CCCeeEEEECCEEEEE---CCccCCHHHHHHHHHHHHHH
Confidence 3568889999999986 47789999999998887654
No 194
>2av4_A Thioredoxin-like protein 4A (DIM1); U5 snRNP-SPECIFIC 15KD prote structural genomics, structural genomics consortium, SGC, U function; 1.73A {Plasmodium yoelii}
Probab=29.16 E-value=62 Score=26.33 Aligned_cols=43 Identities=12% Similarity=0.181 Sum_probs=32.4
Q ss_pred CCcEEEEEECCeEeE-e-------eeccCCCCChhHHHHHHHHHhcCCCCCC
Q 027523 172 SSGAFEVYCNDDLVF-S-------KLKEGRFPGEIELKDLVAKQLASSRLVD 215 (222)
Q Consensus 172 stGaFEV~vng~LV~-S-------Kl~~grfP~~~EL~~~I~~~l~~~~~~~ 215 (222)
+-=.|-++.||+.|. + |+. |..|+.++|.+.|+..+...+-.+
T Consensus 95 siPT~~fFk~G~~v~vd~Gtgd~~k~v-Ga~~~k~~l~~~ie~~~r~a~~g~ 145 (160)
T 2av4_A 95 DPVSVMFFYRNKHMMIDLGTGNNNKIN-WPMNNKQEFIDIVETIFRGARKGR 145 (160)
T ss_dssp SSEEEEEEETTEEEEEECSSSCCSCBC-SCCCCHHHHHHHHHHHHHHHHTTC
T ss_pred CCCEEEEEECCEEEEEecCCCCcCeEE-eecCCHHHHHHHHHHHHHHhhcCC
Confidence 344578889999996 5 655 678889999999998876555444
No 195
>2r5o_A Putative ATP binding component of ABC- transporter; immunoglobulin fold, carbohydrate binding, domain swapping, O antigen export; HET: PG4; 1.30A {Escherichia coli}
Probab=29.14 E-value=12 Score=30.24 Aligned_cols=9 Identities=22% Similarity=0.401 Sum_probs=5.3
Q ss_pred CCcEEEEEE
Q 027523 172 SSGAFEVYC 180 (222)
Q Consensus 172 stGaFEV~v 180 (222)
..|.|-|.+
T Consensus 135 ~~G~Y~lsv 143 (188)
T 2r5o_A 135 NSGDYLLSF 143 (188)
T ss_dssp CSEEEEEEE
T ss_pred CCCeEEEEE
Confidence 456666654
No 196
>2f4l_A Acetamidase, putative; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2, hydrolase; 2.50A {Thermotoga maritima} SCOP: b.23.3.1
Probab=29.13 E-value=13 Score=33.19 Aligned_cols=24 Identities=13% Similarity=-0.024 Sum_probs=18.0
Q ss_pred CCcccccccCCccEEEEEecCCCCc
Q 027523 54 PSQKIVGGIGYGSTVNINFCASCSY 78 (222)
Q Consensus 54 ~~~~~~~~~~~g~tV~i~YC~sCgY 78 (222)
|..++...+-.|.+|+|+ |.+|.-
T Consensus 27 ~~~~Pvl~V~~Gd~V~~e-T~d~~~ 50 (297)
T 2f4l_A 27 ANMAPVEEVYPGEQVVFE-TLDALG 50 (297)
T ss_dssp TTCCCSCEECTTCEEEEE-ECCTTC
T ss_pred CCCCceEEECCCCEEEEE-ECcCCC
Confidence 444477788899999998 668853
No 197
>3tbn_A Putative uncharacterized protein; CDGSH, iron-sulfur, miner2, metal binding protein; 1.15A {Magnetospirillum magneticum}
Probab=29.08 E-value=23 Score=26.54 Aligned_cols=10 Identities=10% Similarity=0.331 Sum_probs=5.5
Q ss_pred ecCCCCchhh
Q 027523 72 FCASCSYRGT 81 (222)
Q Consensus 72 YC~sCgY~~~ 81 (222)
+...||..++
T Consensus 31 ~~C~CG~S~~ 40 (87)
T 3tbn_A 31 HWCACGRSKA 40 (87)
T ss_dssp EECSSSCCSS
T ss_pred EEeeCCCCCC
Confidence 3445776543
No 198
>3aqj_A GPV, baseplate assembly protein V; bacteriophage, tail spike, iron binding, beta-helix, infecti binding protein; 1.27A {Enterobacteria phage P2}
Probab=29.04 E-value=22 Score=27.71 Aligned_cols=8 Identities=50% Similarity=0.987 Sum_probs=0.0
Q ss_pred CCCCCCCC
Q 027523 36 SHHHHKPP 43 (222)
Q Consensus 36 ~~~~~~~~ 43 (222)
|||||||.
T Consensus 3 ~~~~~~~~ 10 (134)
T 3aqj_A 3 HHHHHHHS 10 (134)
T ss_dssp --------
T ss_pred cccccccc
Confidence 34444433
No 199
>2i81_A 2-Cys peroxiredoxin; structural genomics consortium, SGC, oxidoreductase; 2.45A {Plasmodium vivax sai-1} PDB: 2h66_A
Probab=28.97 E-value=62 Score=25.94 Aligned_cols=36 Identities=6% Similarity=-0.165 Sum_probs=24.8
Q ss_pred CcEEEEEECCeEeEeeeccC-CCCChhHHHHHHHHHh
Q 027523 173 SGAFEVYCNDDLVFSKLKEG-RFPGEIELKDLVAKQL 208 (222)
Q Consensus 173 tGaFEV~vng~LV~SKl~~g-rfP~~~EL~~~I~~~l 208 (222)
...|-|-=||++++...... .-++.+|+.+.|++..
T Consensus 143 p~~~lID~~G~i~~~~~~~~~~~~~~~ell~~l~~l~ 179 (213)
T 2i81_A 143 RAFVLIDMNGIVQHLLVNNLAIGRSVDEILRIIDAIQ 179 (213)
T ss_dssp EEEEEECTTSBEEEEEEECTTCCCCHHHHHHHHHHHH
T ss_pred cEEEEECCCCEEEEEEecCCCCCCCHHHHHHHHHHHH
Confidence 34566655799999875421 1247899999998765
No 200
>3idv_A Protein disulfide-isomerase A4; thioredoxin-like fold, disulfide bond, endoplasmic reticulum isomerase, redox-active center; 1.95A {Homo sapiens} PDB: 2dj2_A
Probab=28.92 E-value=2e+02 Score=22.24 Aligned_cols=34 Identities=6% Similarity=0.063 Sum_probs=24.9
Q ss_pred cEEEEEECCeEeEeeeccCCCCChhHHHHHHHHHhcCC
Q 027523 174 GAFEVYCNDDLVFSKLKEGRFPGEIELKDLVAKQLASS 211 (222)
Q Consensus 174 GaFEV~vng~LV~SKl~~grfP~~~EL~~~I~~~l~~~ 211 (222)
=.+-++-||+.+. ..+ .-+.++|.+.|++++.+.
T Consensus 206 Pt~~~~~~g~~~~--~~g--~~~~~~l~~~l~~~~~~~ 239 (241)
T 3idv_A 206 PTLKIFRKGRPYD--YNG--PREKYGIVDYMIEQSGAA 239 (241)
T ss_dssp SEEEEEETTEEEE--CCS--CCSHHHHHHHHHHHTTCT
T ss_pred CEEEEEECCeEEE--ecC--CCCHHHHHHHHHhhhCCC
Confidence 3577777888765 333 348999999999988654
No 201
>3p8b_A DNA-directed RNA polymerase, subunit E''; transcription elongation factor, RNA polymerase, transferase transcription complex; 1.80A {Pyrococcus furiosus}
Probab=28.85 E-value=13 Score=27.58 Aligned_cols=20 Identities=25% Similarity=0.521 Sum_probs=10.4
Q ss_pred CCccEEEEEecCCCCchhhH
Q 027523 63 GYGSTVNINFCASCSYRGTA 82 (222)
Q Consensus 63 ~~g~tV~i~YC~sCgY~~~f 82 (222)
-.|..+...-|..|++-...
T Consensus 16 ~~~~~m~~rAC~~C~~v~~~ 35 (81)
T 3p8b_A 16 PRGSHMSEKACRHCHYITSE 35 (81)
T ss_dssp ------CCEEETTTCBEESS
T ss_pred cCCcchhHHHHhhCCCccCC
Confidence 34555556679999887654
No 202
>1l2j_A Estrogen receptor beta; nuclear receptor, transcription factor, antagonist transcription receptor; HET: ETC; 2.95A {Homo sapiens} SCOP: a.123.1.1
Probab=28.82 E-value=1.5e+02 Score=24.85 Aligned_cols=29 Identities=10% Similarity=0.257 Sum_probs=15.4
Q ss_pred HHHHhhhhHHHHHHHHHHhhcccc--ccccC
Q 027523 110 RLLAKVVPAVQIGVIGIVVAGEQI--FPMLG 138 (222)
Q Consensus 110 ~~Lak~v~~~q~~~i~~i~~G~~i--F~~lG 138 (222)
..+..+...+...+..+|=+-+++ |..|.
T Consensus 59 ~~~~~l~~~a~~~l~~~VewAK~lP~F~~L~ 89 (271)
T 1l2j_A 59 SMMMSLTKLADKELVHMISWAKKIPGFVELS 89 (271)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTSTTGGGSC
T ss_pred hHHHHHHHHHHHHHHHHHHHHHhCcccccCC
Confidence 455555555555555555555554 44444
No 203
>2vmh_A GH95CBM51, fibronectin type III domain protein; carbohydrate-binding module, sugar-binding protein, galactose, fucosidase; 1.50A {Clostridium perfringens} SCOP: b.18.1.33 PDB: 2vmi_A 2vmg_A*
Probab=28.81 E-value=34 Score=27.26 Aligned_cols=17 Identities=41% Similarity=0.710 Sum_probs=14.6
Q ss_pred CCcEEEEEECCeEeEee
Q 027523 172 SSGAFEVYCNDDLVFSK 188 (222)
Q Consensus 172 stGaFEV~vng~LV~SK 188 (222)
.+-.|+||.||+++|+.
T Consensus 89 gsv~F~V~~Dg~~l~~S 105 (151)
T 2vmh_A 89 ASISFEVYLDNEKVFDS 105 (151)
T ss_dssp CEEEEEEEETTEEEEEC
T ss_pred ccEEEEEEcCCeEEEEc
Confidence 46789999999999953
No 204
>1k8w_A TRNA pseudouridine synthase B; protein-RNA complex, T stem-loop, lyase/RNA complex; HET: FHU; 1.85A {Escherichia coli} SCOP: b.122.1.1 d.265.1.2 PDB: 1zl3_A* 1r3f_A
Probab=28.79 E-value=12 Score=33.98 Aligned_cols=8 Identities=25% Similarity=0.841 Sum_probs=3.8
Q ss_pred eeccCCCC
Q 027523 188 KLKEGRFP 195 (222)
Q Consensus 188 Kl~~grfP 195 (222)
+.+.|.|-
T Consensus 215 Rt~~G~F~ 222 (327)
T 1k8w_A 215 RLAVSKYP 222 (327)
T ss_dssp EEEETTCC
T ss_pred EEEEcCCc
Confidence 44455554
No 205
>3m95_A Autophagy related protein ATG8; alpha slash beta, receptor, transport protein; 2.40A {Bombyx mori} SCOP: d.15.1.3
Probab=28.78 E-value=11 Score=29.70 Aligned_cols=35 Identities=11% Similarity=0.316 Sum_probs=21.4
Q ss_pred EEEecCCCCchhhHHHHHHHHHHhCCCc-eeecccCC
Q 027523 69 NINFCASCSYRGTAITMKRMLETQFPGI-DVVLANYP 104 (222)
Q Consensus 69 ~i~YC~sCgY~~~f~~lk~~L~~~yP~i-~V~G~nYP 104 (222)
+++|-....+..+-.+. +.|.++||+- -|.-|-||
T Consensus 10 ~~~fK~~~s~e~R~~e~-~~ir~kyP~rIPVIvEr~~ 45 (125)
T 3m95_A 10 KFQYKEEHSFEKRKAEG-EKIRRKYPDRVPVIVEKAP 45 (125)
T ss_dssp CCHHHHHSCHHHHHHHH-HHHHHHCTTEEEEEEEECT
T ss_pred eeeecccCCHHHHHHHH-HHHHHHCCCeEEEEEEecC
Confidence 56666666666666664 4567779995 34444443
No 206
>3ia1_A THIO-disulfide isomerase/thioredoxin; oxidoreductase, PSI-2, NYSGXRC, structu genomics, protein structure initiative; 1.76A {Thermus thermophilus}
Probab=28.77 E-value=46 Score=24.10 Aligned_cols=35 Identities=20% Similarity=-0.018 Sum_probs=24.3
Q ss_pred EEEEECCeEeEeeeccCCCCChhHHHHHHHHHhcCCCC
Q 027523 176 FEVYCNDDLVFSKLKEGRFPGEIELKDLVAKQLASSRL 213 (222)
Q Consensus 176 FEV~vng~LV~SKl~~grfP~~~EL~~~I~~~l~~~~~ 213 (222)
|-|.-||++++... +..+.+++.+.|++....++.
T Consensus 114 ~lid~~G~i~~~~~---g~~~~~~l~~~l~~~~~~~~~ 148 (154)
T 3ia1_A 114 FVVDREGKVVALFA---GRAGREALLDALLLAGADLEG 148 (154)
T ss_dssp EEECTTSEEEEEEE---SBCCHHHHHHHHHHTTCCC--
T ss_pred EEECCCCCEEEEEc---CCCCHHHHHHHHHhccCcccc
Confidence 44445788887543 346799999999998876543
No 207
>2rem_A Disulfide oxidoreductase; disulfide oxidoreductase, DSBA, thioredoxin fold, redox- active center; 1.90A {Xylella fastidiosa}
Probab=28.50 E-value=1.9e+02 Score=21.83 Aligned_cols=34 Identities=9% Similarity=-0.011 Sum_probs=23.9
Q ss_pred cEEEEEecCCCCchhhHHHHHHHHHHhCCC-ceee
Q 027523 66 STVNINFCASCSYRGTAITMKRMLETQFPG-IDVV 99 (222)
Q Consensus 66 ~tV~i~YC~sCgY~~~f~~lk~~L~~~yP~-i~V~ 99 (222)
.+|.+.+=..|.|=..+...-+.+.++|++ +++.
T Consensus 27 v~i~~f~d~~Cp~C~~~~~~l~~l~~~~~~~v~~~ 61 (193)
T 2rem_A 27 IEVVEIFGYTCPHCAHFDSKLQAWGARQAKDVRFT 61 (193)
T ss_dssp EEEEEEECTTCHHHHHHHHHHHHHHHTSCTTEEEE
T ss_pred eEEEEEECCCChhHhhhhHHHHHHHHhcCCceEEE
Confidence 367777778888877777665677788886 3443
No 208
>2kjr_A CG11242; UBL, ubiquitin, ubiquitin-like, structural genomics, PSI-2, protein structure initiative; NMR {Drosophila melanogaster}
Probab=28.43 E-value=51 Score=23.96 Aligned_cols=14 Identities=29% Similarity=0.121 Sum_probs=11.5
Q ss_pred hhHHHHHHHHHHhC
Q 027523 80 GTAITMKRMLETQF 93 (222)
Q Consensus 80 ~~f~~lk~~L~~~y 93 (222)
.+-.++|+.|+++.
T Consensus 38 ~TV~~LK~kI~~~~ 51 (95)
T 2kjr_A 38 LTVAQLKTKLEILT 51 (95)
T ss_dssp CBHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHH
Confidence 46789999999885
No 209
>3tut_A RNA 3'-terminal phosphate cyclase; cyclase family, cyclization of RNA 3'-phosphate ENDS, transf; HET: ATP; 1.58A {Escherichia coli} PDB: 3tux_A* 3tv1_A* 3tw3_A* 3kgd_A* 1qmh_A* 1qmi_A
Probab=28.24 E-value=12 Score=34.26 Aligned_cols=18 Identities=11% Similarity=-0.032 Sum_probs=11.7
Q ss_pred hhHHHHHHHHHHhhcccc
Q 027523 116 VPAVQIGVIGIVVAGEQI 133 (222)
Q Consensus 116 v~~~q~~~i~~i~~G~~i 133 (222)
--++|.++.++.++...+
T Consensus 119 ~l~lq~lLp~~lFa~~p~ 136 (358)
T 3tut_A 119 TLVLQTVLPALWFADGPS 136 (358)
T ss_dssp HHHHHHHHHHHTTSSSCE
T ss_pred HHHHHHHHHHHHhCCCCE
Confidence 336777777777666543
No 210
>3m9j_A Thioredoxin; oxidoreductase; 1.10A {Homo sapiens} SCOP: c.47.1.1 PDB: 3m9k_A 2hsh_A 1erv_A 2ifq_A 2ifq_B 1auc_A 1eru_A 1ert_A 3kd0_A 1aiu_A 3trx_A 4trx_A 1trs_A 1tru_A 1trv_A 1trw_A 3e3e_A* 1cqg_A 1cqh_A 1mdi_A ...
Probab=28.19 E-value=1.3e+02 Score=19.87 Aligned_cols=35 Identities=9% Similarity=-0.013 Sum_probs=26.1
Q ss_pred ccEEEEEecCCCCchhhHHHHHHHHHHhCCCceee
Q 027523 65 GSTVNINFCASCSYRGTAITMKRMLETQFPGIDVV 99 (222)
Q Consensus 65 g~tV~i~YC~sCgY~~~f~~lk~~L~~~yP~i~V~ 99 (222)
...+-..|-..|++=+.+...-+.+.++|+++.+.
T Consensus 21 ~~~~v~f~~~~C~~C~~~~~~~~~~~~~~~~~~~~ 55 (105)
T 3m9j_A 21 KLVVVDFSATWCGPCKMIKPFFHSLSEKYSNVIFL 55 (105)
T ss_dssp SCEEEEEECTTCHHHHHHHHHHHHHHHHSTTSEEE
T ss_pred CeEEEEEECCCChhhHHHHHHHHHHHHHccCeEEE
Confidence 34666677788887777777777788899997654
No 211
>2i7a_A Calpain 13; calcium-dependent cytoplasmic cysteine proteinases, like, EF-hand, structural genomics, structural genomics CON SGC, hydrolase; 1.80A {Homo sapiens}
Probab=28.15 E-value=33 Score=26.75 Aligned_cols=14 Identities=14% Similarity=0.339 Sum_probs=9.0
Q ss_pred hHHHHHHHHHHhCC
Q 027523 81 TAITMKRMLETQFP 94 (222)
Q Consensus 81 ~f~~lk~~L~~~yP 94 (222)
...|+++.|++-.+
T Consensus 22 ~~~EL~~~l~~l~~ 35 (174)
T 2i7a_A 22 DATQLQGLLNQELL 35 (174)
T ss_dssp EHHHHHHHHHHHHC
T ss_pred CHHHHHHHHHHHHh
Confidence 35677777776543
No 212
>2qv7_A Diacylglycerol kinase DGKB; alpha-beta domain 1, beta sandwich domain 2, protein-ADP COM transferase; HET: ADP; 2.30A {Staphylococcus aureus} SCOP: e.52.1.2 PDB: 2qvl_A
Probab=27.83 E-value=66 Score=27.78 Aligned_cols=32 Identities=9% Similarity=0.020 Sum_probs=14.5
Q ss_pred EEEEEecCCCC---chhhHHHHHHHHHHhCCCcee
Q 027523 67 TVNINFCASCS---YRGTAITMKRMLETQFPGIDV 98 (222)
Q Consensus 67 tV~i~YC~sCg---Y~~~f~~lk~~L~~~yP~i~V 98 (222)
++.|.+...-| -++.+.++++.|++.--++.+
T Consensus 26 ~i~vI~NP~sg~~~~~~~~~~i~~~L~~~g~~~~~ 60 (337)
T 2qv7_A 26 RARIIYNPTSGKEQFKRELPDALIKLEKAGYETSA 60 (337)
T ss_dssp EEEEEECTTSTTSCHHHHHHHHHHHHHHTTEEEEE
T ss_pred eEEEEECCCCCCCchHHHHHHHHHHHHHcCCeEEE
Confidence 34444444333 123455566666554333333
No 213
>4ddd_A Immunogenic protein; ssgcid, structural genomics, seattle structural genomics CEN infectious disease, immune system; 1.90A {Ehrlichia chaffeensis}
Probab=27.77 E-value=70 Score=27.43 Aligned_cols=28 Identities=11% Similarity=0.081 Sum_probs=18.5
Q ss_pred chhhHHHHHHHHHHh---CCCceeecccCCC
Q 027523 78 YRGTAITMKRMLETQ---FPGIDVVLANYPP 105 (222)
Q Consensus 78 Y~~~f~~lk~~L~~~---yP~i~V~G~nYPp 105 (222)
|-.....+.+.+.++ .++++|+-+|.+-
T Consensus 45 ~~~~~~~la~~l~~~~~~~~g~~v~v~~~~g 75 (327)
T 4ddd_A 45 YYPIGGSICRFIASDYGKDNKIICSISSTTG 75 (327)
T ss_dssp HHHHHHHHHHHHHHHHGGGTSEEEEEECCCC
T ss_pred HHHHHHHHHHHHHhccCCCCCeEEEEEecCc
Confidence 444555677777777 4888887666543
No 214
>3ec7_A Putative dehydrogenase; alpha-beta, structural genomics, PSI-2, protein structure in midwest center for structural genomics, MCSG; HET: MSE NAD EPE; 2.15A {Salmonella typhimurium}
Probab=27.77 E-value=45 Score=29.00 Aligned_cols=13 Identities=38% Similarity=0.698 Sum_probs=5.6
Q ss_pred HHHHHhCCCceee
Q 027523 87 RMLETQFPGIDVV 99 (222)
Q Consensus 87 ~~L~~~yP~i~V~ 99 (222)
+.|.++.|+.++.
T Consensus 40 ~~l~~~~~~~~lv 52 (357)
T 3ec7_A 40 RRLANTVSGVEVV 52 (357)
T ss_dssp HHHHHTCTTEEEE
T ss_pred HHHHhhCCCcEEE
Confidence 3344344555443
No 215
>4amg_A Snogd; transferase, polyketide biosynthesis, GT1 family, nogalamyci; HET: MLY; 2.59A {Streptomyces nogalater} PDB: 4an4_A* 4amb_A*
Probab=27.61 E-value=24 Score=29.90 Aligned_cols=26 Identities=15% Similarity=0.116 Sum_probs=15.6
Q ss_pred EEEEEecCCC--CchhhHHHHHHHHHHh
Q 027523 67 TVNINFCASC--SYRGTAITMKRMLETQ 92 (222)
Q Consensus 67 tV~i~YC~sC--gY~~~f~~lk~~L~~~ 92 (222)
.++|.+...- |--.-+..+.+.|.++
T Consensus 22 ~MRIL~~~~p~~GHv~P~l~LA~~L~~r 49 (400)
T 4amg_A 22 SMRALFITSPGLSHILPTVPLAQALRAL 49 (400)
T ss_dssp CCEEEEECCSSHHHHGGGHHHHHHHHHT
T ss_pred CCeEEEECCCchhHHHHHHHHHHHHHHC
Confidence 3566665332 2344567888888876
No 216
>3okg_A Restriction endonuclease S subunits; coiled-coil, type I methyltransferase, DNA binding, DNA BIND protein; 1.95A {Thermoanaerobacter tengcongensis}
Probab=27.49 E-value=20 Score=30.89 Aligned_cols=21 Identities=29% Similarity=0.414 Sum_probs=4.2
Q ss_pred CCCCCCCCCCC-CCCCCCCCCC
Q 027523 35 ASHHHHKPPIP-SENLTPDFPS 55 (222)
Q Consensus 35 ~~~~~~~~~~~-~~~~~~~~~~ 55 (222)
||||||.--.+ ....|.+.|.
T Consensus 3 ~~~~~~~~~~~~~~e~Pf~iP~ 24 (412)
T 3okg_A 3 HHHHHHSMDIEFMTEGPYKLPP 24 (412)
T ss_dssp ------------CCSCSSCCCT
T ss_pred ccccccccchhhhhcCCccCCC
Confidence 44444433333 2334454443
No 217
>2f8a_A Glutathione peroxidase 1; thioredoxin fold, structural genomics, structural genomics consortium, SGC, oxidoreductase; 1.50A {Homo sapiens} SCOP: c.47.1.10 PDB: 1gp1_A 2he3_A
Probab=27.12 E-value=45 Score=26.76 Aligned_cols=32 Identities=13% Similarity=-0.055 Sum_probs=22.6
Q ss_pred EEEEEECCeEeEeeeccCCCCChhHHHHHHHHHhc
Q 027523 175 AFEVYCNDDLVFSKLKEGRFPGEIELKDLVAKQLA 209 (222)
Q Consensus 175 aFEV~vng~LV~SKl~~grfP~~~EL~~~I~~~l~ 209 (222)
.|-|-=||++++... | ..+.++|.+.|++.+.
T Consensus 176 tflID~~G~i~~~~~--g-~~~~~~l~~~I~~ll~ 207 (208)
T 2f8a_A 176 KFLVGPDGVPLRRYS--R-RFQTIDIEPDIEALLS 207 (208)
T ss_dssp EEEECTTSCEEEEEC--T-TSCGGGGHHHHHHHHC
T ss_pred EEEEcCCCcEEEEeC--C-CCCHHHHHHHHHHHhh
Confidence 566666899998654 2 2356889998888763
No 218
>2apo_A Probable tRNA pseudouridine synthase B; protein-protein complex, box H/ACA, snoRNP, pseudouridine synthase, RNA modification; 1.95A {Methanocaldococcus jannaschii} SCOP: b.122.1.1 d.265.1.2
Probab=27.09 E-value=13 Score=33.94 Aligned_cols=16 Identities=13% Similarity=0.077 Sum_probs=9.1
Q ss_pred CCCCChhHHHHHHHHH
Q 027523 192 GRFPGEIELKDLVAKQ 207 (222)
Q Consensus 192 grfP~~~EL~~~I~~~ 207 (222)
|..++.++|.+.+.+.
T Consensus 137 G~~~~~~~i~~~l~~f 152 (357)
T 2apo_A 137 HRDASEEDILRVFKEF 152 (357)
T ss_dssp SSCCCHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHhC
Confidence 3445666666666553
No 219
>4f0l_A Amidohydrolase; ssgcid, structural genomics, seattle structural genomics CEN infectious disease; 2.05A {Brucella melitensis biovar abortus}
Probab=26.98 E-value=44 Score=29.33 Aligned_cols=33 Identities=18% Similarity=0.135 Sum_probs=27.4
Q ss_pred cEEEEEECCeEeEeeeccCCCCChhHHHHHHHHHhc
Q 027523 174 GAFEVYCNDDLVFSKLKEGRFPGEIELKDLVAKQLA 209 (222)
Q Consensus 174 GaFEV~vng~LV~SKl~~grfP~~~EL~~~I~~~l~ 209 (222)
.+-.|++||+.||.. |++.+.++|.+..++...
T Consensus 422 ~v~~v~v~G~~v~~~---g~~~d~~~i~~~~~~~~~ 454 (458)
T 4f0l_A 422 HVCDVWVRGVKQVEG---GRHRLRDEAERAFQKALG 454 (458)
T ss_dssp EEEEEEETTEEEEET---TEETTHHHHHHHHHHHHH
T ss_pred CceEEEECCEEEEEC---CEeCCHHHHHHHHHHHHH
Confidence 677789999999965 567899999999888764
No 220
>2ygr_A Uvrabc system protein A; hydrolase, nucleotide excision repair; 3.40A {Mycobacterium tuberculosis} PDB: 3zqj_A
Probab=26.90 E-value=13 Score=38.26 Aligned_cols=14 Identities=14% Similarity=0.100 Sum_probs=8.9
Q ss_pred CCcEEEEEECCeEe
Q 027523 172 SSGAFEVYCNDDLV 185 (222)
Q Consensus 172 stGaFEV~vng~LV 185 (222)
..|--.|.+||+.+
T Consensus 193 ~~G~~r~~~~g~~~ 206 (993)
T 2ygr_A 193 AQGYSRVRVDGVVH 206 (993)
T ss_dssp TTCCCCEEESSCEE
T ss_pred hcCceEEEECCEEE
Confidence 45666677777654
No 221
>3hvu_A Hypoxanthine phosphoribosyltransferase; hypoxanthine-guanine phosphoribosyltransferase, 2-(N-morphol ethanesulfonic acid (MES), IDP01892; HET: MES; 1.95A {Bacillus anthracis str} PDB: 3h83_A* 3kb8_A*
Probab=26.71 E-value=33 Score=28.45 Aligned_cols=42 Identities=5% Similarity=0.152 Sum_probs=20.9
Q ss_pred CCCCCCCcccccccCCccEEEEEecCCCCchhhHHHHHHHHHHhCCC
Q 027523 49 LTPDFPSQKIVGGIGYGSTVNINFCASCSYRGTAITMKRMLETQFPG 95 (222)
Q Consensus 49 ~~~~~~~~~~~~~~~~g~tV~i~YC~sCgY~~~f~~lk~~L~~~yP~ 95 (222)
+..+||+... +-..++-.+-..=..+..-.++.+.|.++|++
T Consensus 16 ~~~~f~~~~~-----~~~di~~~l~s~~~i~~~i~~LA~~I~~~~~~ 57 (204)
T 3hvu_A 16 ENLYFQSNAM-----MNQDIEKVLISEEQIQEKVLELGAIIAEDYKN 57 (204)
T ss_dssp ---CCCCCCC-----GGGGEEEEEECHHHHHHHHHHHHHHHHHHTSS
T ss_pred CCCCCCCchh-----hhhcCCcEeCCHHHHHHHHHHHHHHHHHHcCC
Confidence 5677886531 22222222222223456667778888888864
No 222
>2jeo_A Uridine-cytidine kinase 1; UCK, transferase, ATP-binding, nucleoside kinase, nucleotide-binding; 2.50A {Homo sapiens} PDB: 2uvq_A*
Probab=26.63 E-value=18 Score=29.48 Aligned_cols=11 Identities=0% Similarity=-0.148 Sum_probs=5.5
Q ss_pred ChhHHHHHHHH
Q 027523 196 GEIELKDLVAK 206 (222)
Q Consensus 196 ~~~EL~~~I~~ 206 (222)
+.+|+.+.+.+
T Consensus 181 ~~e~~~~~~~~ 191 (245)
T 2jeo_A 181 DLEQILTQYTT 191 (245)
T ss_dssp CHHHHHHHHHH
T ss_pred CHHHHHHHHHH
Confidence 45555554443
No 223
>2a2p_A Selenoprotein M, SELM protein; redox enzyme, oxidoreductase; NMR {Mus musculus} SCOP: c.47.1.23
Probab=26.52 E-value=37 Score=27.04 Aligned_cols=36 Identities=8% Similarity=0.201 Sum_probs=28.0
Q ss_pred CCccEEEEEecCCCCchhhHHHHHHHHHHh---CCCceee
Q 027523 63 GYGSTVNINFCASCSYRGTAITMKRMLETQ---FPGIDVV 99 (222)
Q Consensus 63 ~~g~tV~i~YC~sCgY~~~f~~lk~~L~~~---yP~i~V~ 99 (222)
..-....++-|..|. .++|-+++.+|++. ||++.|.
T Consensus 12 ~~yarA~lEvC~~Ck-L~~~PeIk~FIk~d~~~y~~v~Vk 50 (129)
T 2a2p_A 12 RGLARGRVETCGGCQ-LNRLKEVKAFVTEDIQLYHNLVMK 50 (129)
T ss_dssp TTCCEEEEEEETTCC-CSTTHHHHHHTTTHHHHBTTEEEE
T ss_pred cccceEEEEECCCcc-cccchhHHHHHhCchhhcCceeEE
Confidence 344567889999998 66899999999654 8888764
No 224
>3t21_A Endo-type membrane-bound lytic murein transglycos; goose type lysozyme-like structure, lytic transglycosylase,; HET: NAG; 1.90A {Escherichia coli} PDB: 3t1z_A* 4hjy_A* 4hjz_A* 3t36_A 3t4i_A* 4hjv_A* 2y8p_A
Probab=26.52 E-value=14 Score=30.79 Aligned_cols=18 Identities=6% Similarity=-0.173 Sum_probs=13.3
Q ss_pred hhHHHHHHHHHHhhhhcc
Q 027523 153 FGSIASTWLIGNFLQSFL 170 (222)
Q Consensus 153 ~~~~~~~~~~~n~l~~~l 170 (222)
.-+-+++|++..+++.+.
T Consensus 115 ~NI~~Ga~yL~~l~~~~~ 132 (206)
T 3t21_A 115 RNISMGAAYLNILETGPL 132 (206)
T ss_dssp HHHHHHHHHHHHHHHTTT
T ss_pred HHHHHHHHHHHHHHHHhc
Confidence 345578888888888764
No 225
>3u1h_A 3-isopropylmalate dehydrogenase; oxidored; 2.80A {Bacillus SP} PDB: 2ayq_A 1v53_A 1v5b_A
Probab=26.45 E-value=17 Score=33.80 Aligned_cols=37 Identities=22% Similarity=0.320 Sum_probs=18.7
Q ss_pred cccccCCccEEEEEecCCCCchhhHHHHHHHHHHhCCCceeecccCCC
Q 027523 58 IVGGIGYGSTVNINFCASCSYRGTAITMKRMLETQFPGIDVVLANYPP 105 (222)
Q Consensus 58 ~~~~~~~g~tV~i~YC~sCgY~~~f~~lk~~L~~~yP~i~V~G~nYPp 105 (222)
...|-|.|++| -....++=+.+.++| ++.++-+.++.
T Consensus 28 vipGDGIGpEV----------~~~a~~Vl~a~~~~~-g~~~~~~~~~~ 64 (390)
T 3u1h_A 28 VLPGDGIGPEV----------MEAAIEVLKAVAERF-GHEFEFEYGLI 64 (390)
T ss_dssp EEEESTTHHHH----------HHHHHHHHHHHHHHH-SCCCEEEECCC
T ss_pred EECCCccCHHH----------HHHHHHHHHHHHHhc-CCCeEEEEEEc
Confidence 33444677765 445555555555555 34444444443
No 226
>1u83_A Phosphosulfolactate synthase; structural genomics, phosphosulfolactate PSI, protein structure initiative, midwest center for struc genomics; 2.20A {Bacillus subtilis} SCOP: c.1.27.1
Probab=26.37 E-value=40 Score=30.00 Aligned_cols=37 Identities=11% Similarity=-0.020 Sum_probs=19.6
Q ss_pred CCCCCC----CcccccccCCccEEEEEecCCCCchhhHHHHHHHHHHhCC
Q 027523 49 LTPDFP----SQKIVGGIGYGSTVNINFCASCSYRGTAITMKRMLETQFP 94 (222)
Q Consensus 49 ~~~~~~----~~~~~~~~~~g~tV~i~YC~sCgY~~~f~~lk~~L~~~yP 94 (222)
.+++|| +.|+. ..|.|+-+--..+ ..+++.+|+..=+
T Consensus 24 ~~~~f~~~~R~~KPR---~~GlT~v~Dkglg------~~~~~DlLe~ag~ 64 (276)
T 1u83_A 24 NDFSLELPVRTNKPR---ETGQSILIDNGYP------LQFFKDAIAGASD 64 (276)
T ss_dssp -CCCCCCCCCCCSSC---SSSCEEEEESSCC------HHHHHHHHHHHGG
T ss_pred ccccCCCCCcCCCCc---ccCceEEecCCCC------HHHHHHHHHHhhh
Confidence 467777 34454 6777776663332 2334555555433
No 227
>1uh6_A Ubiquitin-like 5; beta-grAsp fold, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Mus musculus} SCOP: d.15.1.1
Probab=26.18 E-value=63 Score=24.17 Aligned_cols=15 Identities=20% Similarity=0.277 Sum_probs=11.6
Q ss_pred hhhHHHHHHHHHHhC
Q 027523 79 RGTAITMKRMLETQF 93 (222)
Q Consensus 79 ~~~f~~lk~~L~~~y 93 (222)
...-.++|+.|+++.
T Consensus 48 ~dTV~~lK~~Ia~k~ 62 (100)
T 1uh6_A 48 DDTIGDLKKLIAAQT 62 (100)
T ss_dssp TSBHHHHHHHHHHHH
T ss_pred CCcHHHHHHHHHHHh
Confidence 456688999998883
No 228
>3jtz_A Integrase; four stranded beta-sheet, DNA binding protein; 1.30A {Yersinia pestis} PDB: 3rmp_A
Probab=26.07 E-value=14 Score=26.89 Aligned_cols=9 Identities=44% Similarity=0.748 Sum_probs=0.0
Q ss_pred CCCCCCCCC
Q 027523 32 PKSASHHHH 40 (222)
Q Consensus 32 ~~~~~~~~~ 40 (222)
+|.||||||
T Consensus 80 dp~~~~~~~ 88 (88)
T 3jtz_A 80 NLEHHHHHH 88 (88)
T ss_dssp ---------
T ss_pred CchhcccCC
Confidence 455555443
No 229
>2l7b_A Apolipoprotein E, APO-E; lipid transport, atherosclerosis, alzheime disease; NMR {Homo sapiens}
Probab=25.78 E-value=14 Score=32.87 Aligned_cols=8 Identities=13% Similarity=-0.296 Sum_probs=2.9
Q ss_pred CChHHHHH
Q 027523 105 PPLPKRLL 112 (222)
Q Consensus 105 pp~~k~~L 112 (222)
+++|-.+.
T Consensus 31 ~~~~e~v~ 38 (307)
T 2l7b_A 31 GQRWELAL 38 (307)
T ss_dssp CSHHHHHH
T ss_pred CChHHHHH
Confidence 33333333
No 230
>2kk0_A AT-rich interactive domain-containing protein 3A; DEAD ringer, AT-rich interaction domain, NESG, ARID, cytopla binding, nucleus, phosphoprotein; NMR {Homo sapiens}
Probab=25.74 E-value=43 Score=26.39 Aligned_cols=39 Identities=5% Similarity=-0.079 Sum_probs=21.4
Q ss_pred CCCCCCCCCCCCCcccc-cccCCccEEEEEecCCCCchhhH-HHHHHHHHHh
Q 027523 43 PIPSENLTPDFPSQKIV-GGIGYGSTVNINFCASCSYRGTA-ITMKRMLETQ 92 (222)
Q Consensus 43 ~~~~~~~~~~~~~~~~~-~~~~~g~tV~i~YC~sCgY~~~f-~~lk~~L~~~ 92 (222)
..+......-|++.-.. .-++..+ . +..| ++|.++.+++
T Consensus 9 ~~~~~~~~f~F~~r~q~L~eL~~~~----------~-~~~Fl~~L~~F~~~r 49 (145)
T 2kk0_A 9 SHMPDHGDWTYEEQFKQLYELDGDP----------K-RKEFLDDLFSFMQKR 49 (145)
T ss_dssp CCSCCTTSCCCCCCCTHHHHTTCCH----------H-HHHHHHHHHHHHHHT
T ss_pred ccccCCCCceecCccccHhhccCch----------h-HHHHHHHHHHHHHHc
Confidence 33456777888877611 0111111 2 4455 6778888877
No 231
>3hkx_A Amidase; alpha-beta-BETA-alpha:alpha-beta-BETA-alpha dimeric sandwich hydrolase; 1.66A {Nesterenkonia SP}
Probab=25.72 E-value=59 Score=27.33 Aligned_cols=16 Identities=0% Similarity=-0.161 Sum_probs=10.6
Q ss_pred CchhhHHHHHHHHHHh
Q 027523 77 SYRGTAITMKRMLETQ 92 (222)
Q Consensus 77 gY~~~f~~lk~~L~~~ 92 (222)
....+.+.+.+++++.
T Consensus 34 d~~~N~~~~~~~i~~A 49 (283)
T 3hkx_A 34 DPQHNLDLIDDAAARA 49 (283)
T ss_dssp CHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHH
Confidence 3566777777777654
No 232
>2kj5_A Phage integrase; GFT PSI-2, NESG, structural genomics, structure initiative; NMR {Nitrosospira multiformis atcc 25196}
Probab=25.67 E-value=44 Score=23.09 Aligned_cols=8 Identities=63% Similarity=1.037 Sum_probs=3.1
Q ss_pred CCCCCCCC
Q 027523 33 KSASHHHH 40 (222)
Q Consensus 33 ~~~~~~~~ 40 (222)
...|||||
T Consensus 108 ~~~~~~~~ 115 (116)
T 2kj5_A 108 KLEHHHHH 115 (116)
T ss_dssp CCCSSCCC
T ss_pred hhhhcccC
Confidence 33343333
No 233
>3q8g_A CRAL-TRIO domain-containing protein YKL091C; string motif, signaling protein, directed evoluti SEC14, phospholipid transporter, lipid; HET: PEE; 1.80A {Saccharomyces cerevisiae} PDB: 3b7n_A* 3b74_A* 3b7q_A* 3b7z_A*
Probab=25.54 E-value=22 Score=31.06 Aligned_cols=14 Identities=7% Similarity=0.264 Sum_probs=9.8
Q ss_pred hhhHHHHHHHHHHh
Q 027523 79 RGTAITMKRMLETQ 92 (222)
Q Consensus 79 ~~~f~~lk~~L~~~ 92 (222)
+...+++++.|++.
T Consensus 40 ~~~l~~lR~~l~~~ 53 (320)
T 3q8g_A 40 EEALLQFRSILLEK 53 (320)
T ss_dssp HHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHhc
Confidence 45667777777765
No 234
>2k4z_A DSRR; ISCA/SUFA/HESB like fold, structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; NMR {Allochromatium vinosum}
Probab=25.53 E-value=75 Score=24.31 Aligned_cols=14 Identities=7% Similarity=0.012 Sum_probs=12.0
Q ss_pred hhhHHHHHHHHHHh
Q 027523 79 RGTAITMKRMLETQ 92 (222)
Q Consensus 79 ~~~f~~lk~~L~~~ 92 (222)
..+..+++++++++
T Consensus 27 ~~Aa~~ik~ll~~~ 40 (125)
T 2k4z_A 27 PAAAEQVLKAAKQG 40 (125)
T ss_dssp HHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHhhC
Confidence 78889999999776
No 235
>1zbm_A Hypothetical protein AF1704; alpha-beta protein, structural genomics, PSI, protein struct initiative; 2.30A {Archaeoglobus fulgidus} SCOP: c.94.1.1
Probab=25.47 E-value=18 Score=29.45 Aligned_cols=7 Identities=0% Similarity=-0.311 Sum_probs=3.6
Q ss_pred ccEEEEE
Q 027523 65 GSTVNIN 71 (222)
Q Consensus 65 g~tV~i~ 71 (222)
|-+|++.
T Consensus 37 Gl~ve~~ 43 (280)
T 1zbm_A 37 WLEIEHV 43 (280)
T ss_dssp SCEEEEE
T ss_pred CceEEEE
Confidence 4555553
No 236
>2fgx_A Putative thioredoxin; NET3, NESG, GFT-glutaredoxin-like, structural genomics, PSI, protein structure initiative; NMR {Nitrosomonas europaea}
Probab=25.47 E-value=53 Score=24.45 Aligned_cols=29 Identities=14% Similarity=0.101 Sum_probs=17.3
Q ss_pred cEEEEEecCCCCchhhHHHHHHHHHHhCC
Q 027523 66 STVNINFCASCSYRGTAITMKRMLETQFP 94 (222)
Q Consensus 66 ~tV~i~YC~sCgY~~~f~~lk~~L~~~yP 94 (222)
.+|.+.+=..|++=+....+=+.+.++++
T Consensus 30 ~~vv~y~~~~C~~C~~a~~~L~~l~~e~~ 58 (107)
T 2fgx_A 30 RKLVVYGREGCHLCEEMIASLRVLQKKSW 58 (107)
T ss_dssp CCEEEEECSSCHHHHHHHHHHHHHHHHSC
T ss_pred cEEEEEeCCCChhHHHHHHHHHHHHHhcC
Confidence 45666555578776666655555555564
No 237
>4dt4_A FKBP-type 16 kDa peptidyl-prolyl CIS-trans isomer; FKBP domain, IF domain, chaperone, peptidyl-prolyl isomerase isomerase; 1.35A {Escherichia coli}
Probab=25.39 E-value=63 Score=26.19 Aligned_cols=14 Identities=21% Similarity=0.323 Sum_probs=10.1
Q ss_pred cCCccEEEEEecCC
Q 027523 62 IGYGSTVNINFCAS 75 (222)
Q Consensus 62 ~~~g~tV~i~YC~s 75 (222)
+..|.+|.+.|-..
T Consensus 25 i~~gd~V~v~Y~g~ 38 (169)
T 4dt4_A 25 VQSNSAVLVHFTLK 38 (169)
T ss_dssp CCTTCEEEEEEEEE
T ss_pred CCCCCEEEEEEEEE
Confidence 45677888888654
No 238
>4f27_A Clumping factor B; DEV-IGG fold, protein-peptide complex, fibronogen, cell SURF adhesion-blood clotting complex; 1.92A {Staphylococcus aureus} PDB: 4f20_A 4f24_A 4f1z_A 3au0_A 3at0_A 3asw_A
Probab=25.37 E-value=15 Score=31.97 Aligned_cols=6 Identities=67% Similarity=1.276 Sum_probs=0.0
Q ss_pred CCCCCC
Q 027523 35 ASHHHH 40 (222)
Q Consensus 35 ~~~~~~ 40 (222)
||||||
T Consensus 5 ~~~~~~ 10 (363)
T 4f27_A 5 HHHHHH 10 (363)
T ss_dssp ------
T ss_pred cccccc
Confidence 333333
No 239
>2j1l_A RHO-related GTP-binding protein RHOD; GTPase, membrane, prenylation, hydrolase, nucleotide-binding, methylation, lipoprotein, endosome DYNA; HET: GDP; 2.5A {Homo sapiens}
Probab=25.31 E-value=31 Score=27.07 Aligned_cols=16 Identities=13% Similarity=0.162 Sum_probs=10.3
Q ss_pred cEEEEEecCCCCchhh
Q 027523 66 STVNINFCASCSYRGT 81 (222)
Q Consensus 66 ~tV~i~YC~sCgY~~~ 81 (222)
.+++|..+...|-.+.
T Consensus 33 ~~~ki~vvG~~~vGKS 48 (214)
T 2j1l_A 33 RSVKVVLVGDGGCGKT 48 (214)
T ss_dssp CEEEEEEEECTTSSHH
T ss_pred ceEEEEEECcCCCCHH
Confidence 3577777777665544
No 240
>3vmk_A 3-isopropylmalate dehydrogenase; oxidoreductase, decarboxylating dehydrogenase; HET: IPM; 1.48A {Shewanella benthica} PDB: 3vml_A* 3vmj_A* 3vl2_A* 3vkz_A* 3vl4_A* 3vl6_A* 3vl7_A* 3vl3_A*
Probab=25.27 E-value=22 Score=32.73 Aligned_cols=36 Identities=22% Similarity=0.379 Sum_probs=19.7
Q ss_pred cccCCccEEEEEecCCCCchhhHHHHHHHHHHhCCCceeecccCCCC
Q 027523 60 GGIGYGSTVNINFCASCSYRGTAITMKRMLETQFPGIDVVLANYPPP 106 (222)
Q Consensus 60 ~~~~~g~tV~i~YC~sCgY~~~f~~lk~~L~~~yP~i~V~G~nYPpp 106 (222)
.|-|.|++| -....++=+.+.++| ++.++-+.|+..
T Consensus 20 pGDGIGpEV----------~~~a~~Vl~a~~~~~-g~~~~~~~~~~G 55 (375)
T 3vmk_A 20 AGDGIGPEV----------MAEARKVLAAVEKRF-DLSIEYSEYDVG 55 (375)
T ss_dssp EESTTHHHH----------HHHHHHHHHHHHHHT-TCCEEEEECCCT
T ss_pred CCCcccHHH----------HHHHHHHHHHHHHhc-CCCEEEEEEECC
Confidence 344777765 445555555566666 355555555544
No 241
>1vjv_A Ubiquitin carboxyl-terminal hydrolase 6; YFR010W, structural genomics, JCSG, PSI, protein structure initiative; HET: MSE; 1.74A {Saccharomyces cerevisiae} SCOP: d.3.1.9
Probab=25.21 E-value=22 Score=31.40 Aligned_cols=10 Identities=10% Similarity=0.142 Sum_probs=4.7
Q ss_pred HHHHHHHHHh
Q 027523 199 ELKDLVAKQL 208 (222)
Q Consensus 199 EL~~~I~~~l 208 (222)
.|.+.+++.+
T Consensus 187 ~l~~~L~~~~ 196 (415)
T 1vjv_A 187 FMRNGLLEGL 196 (415)
T ss_dssp BHHHHHHHHH
T ss_pred hHHHHHHHHh
Confidence 3445555444
No 242
>2kgo_A Uncharacterized protein YBII; Zn finger, partially disordered, structural proteomics, META binding, zinc-finger, structural genomics; NMR {Escherichia coli}
Probab=25.18 E-value=37 Score=26.13 Aligned_cols=15 Identities=13% Similarity=0.257 Sum_probs=9.7
Q ss_pred EecCCCCchhhHHHH
Q 027523 71 NFCASCSYRGTAITM 85 (222)
Q Consensus 71 ~YC~sCgY~~~f~~l 85 (222)
-||..||-.-....+
T Consensus 57 G~C~~CGe~Ip~~RL 71 (108)
T 2kgo_A 57 DECEECGAPIPQARR 71 (108)
T ss_dssp SBCTTTCCBCCHHHH
T ss_pred ceecccCCcccHHHH
Confidence 489999865544443
No 243
>4akr_B F-actin-capping protein subunit beta; actin-binding protein; 2.20A {Dictyostelium discoideum}
Probab=25.11 E-value=15 Score=32.98 Aligned_cols=46 Identities=15% Similarity=0.329 Sum_probs=23.5
Q ss_pred CccEEEEEecCCC-------CchhhHHHHHHHHHHhC-CCceeecccCCCChHHHH
Q 027523 64 YGSTVNINFCASC-------SYRGTAITMKRMLETQF-PGIDVVLANYPPPLPKRL 111 (222)
Q Consensus 64 ~g~tV~i~YC~sC-------gY~~~f~~lk~~L~~~y-P~i~V~G~nYPpp~~k~~ 111 (222)
....++|.+|... -|-+-=+-|+.=-.++| |.+. -+-||....+++
T Consensus 61 VDqPLki~~d~~~~k~yL~CDYNRDGDSYRSPwSNkY~Ppl~--dg~~PS~~LRkL 114 (290)
T 4akr_B 61 IDQPLKVAYDAVSKKDYLLCDYNRDADSYRSPWSNKYDPPLS--GACYPSSKLRDI 114 (290)
T ss_dssp CCCCCEEEEETTTTEEEEECGGGEETTEEECTTTCCEESCCS--SCCCCCHHHHHH
T ss_pred CCCcceEeEccccCCeEEeecccCCCccccCCCCCCcCCCCC--CCCCChHHHHHH
Confidence 4456888888863 34333333333333443 5552 245555555543
No 244
>2krk_A 26S protease regulatory subunit 8; structural genomics, northeast structural genomics consortium (NESG), target HR3102A, PSI-2; NMR {Homo sapiens}
Probab=25.07 E-value=27 Score=24.86 Aligned_cols=9 Identities=11% Similarity=0.113 Sum_probs=3.4
Q ss_pred ChhHHHHHH
Q 027523 196 GEIELKDLV 204 (222)
Q Consensus 196 ~~~EL~~~I 204 (222)
+.+++.+.+
T Consensus 70 ~~~df~~Al 78 (86)
T 2krk_A 70 TQEDFEMAV 78 (86)
T ss_dssp CHHHHHHHH
T ss_pred CHHHHHHHH
Confidence 333333333
No 245
>2vng_A CPE0329; family 51 carbohydrate binding module, family 98 glycoside hydrolase, A-trisaccharide, blood group antigen, hydrolase; HET: A2G GAL FUC; 1.4A {Clostridium perfringens} SCOP: b.18.1.33 PDB: 2vno_A* 2vnr_A
Probab=25.05 E-value=42 Score=27.80 Aligned_cols=16 Identities=19% Similarity=0.526 Sum_probs=13.6
Q ss_pred EEEEEECCeEeEeeec
Q 027523 175 AFEVYCNDDLVFSKLK 190 (222)
Q Consensus 175 aFEV~vng~LV~SKl~ 190 (222)
.|||+.||+++|+.-.
T Consensus 109 ~F~V~~DGk~l~~S~v 124 (180)
T 2vng_A 109 KIEVVVDGKVIYSTIN 124 (180)
T ss_dssp EEEEEETTEEEEETTT
T ss_pred EEEEEeCCeEEEEcCC
Confidence 5999999999997643
No 246
>2obi_A PHGPX, GPX-4, phospholipid hydroperoxide glutathione peroxidase (GPX4); human GPX4, selenoprotein, thioredoxin-fold, anti-oxidatve defense system; 1.55A {Homo sapiens}
Probab=25.03 E-value=83 Score=23.88 Aligned_cols=31 Identities=10% Similarity=-0.033 Sum_probs=19.6
Q ss_pred cEEEEEECCeEeEeeeccCCCCChhHHHHHHHHH
Q 027523 174 GAFEVYCNDDLVFSKLKEGRFPGEIELKDLVAKQ 207 (222)
Q Consensus 174 GaFEV~vng~LV~SKl~~grfP~~~EL~~~I~~~ 207 (222)
..|-|-=||++++... | ..+.++|.+.|++.
T Consensus 152 ~~~lid~~G~i~~~~~--g-~~~~~~l~~~i~~l 182 (183)
T 2obi_A 152 TKFLIDKNGCVVKRYG--P-MEEPLVIEKDLPHY 182 (183)
T ss_dssp CEEEECTTSCEEEEEC--T-TSCTHHHHTTSGGG
T ss_pred eEEEECCCCCEEEEeC--C-CCCHHHHHHHHHHh
Confidence 3466656799998632 2 34667777766543
No 247
>1gxe_A Myosin binding protein C, cardiac-type; cytoskeleton, muscle, IGI, thick filament, immunoglobulin domain; NMR {Homo sapiens} SCOP: b.1.1.4
Probab=24.35 E-value=24 Score=26.82 Aligned_cols=14 Identities=7% Similarity=0.038 Sum_probs=6.7
Q ss_pred CCccEEEEEecCCCC
Q 027523 63 GYGSTVNINFCASCS 77 (222)
Q Consensus 63 ~~g~tV~i~YC~sCg 77 (222)
..|.++.+ .|..-|
T Consensus 31 ~~G~~v~L-~C~~~G 44 (139)
T 1gxe_A 31 VAGNKLRL-DVPISG 44 (139)
T ss_dssp SSSSCCCC-EEECCS
T ss_pred eCCCeEEE-EEEEEE
Confidence 44555544 355444
No 248
>2gn4_A FLAA1 protein, UDP-GLCNAC C6 dehydratase; rossmann fold, TYK triad, SDR, enzyme, NADP, NADPH, lyase; HET: NDP UD1 MES; 1.90A {Helicobacter pylori} PDB: 2gn6_A* 2gn8_A* 2gn9_A* 2gna_A*
Probab=24.32 E-value=24 Score=30.30 Aligned_cols=15 Identities=27% Similarity=-0.022 Sum_probs=7.7
Q ss_pred CChhHHHHHHHHHhc
Q 027523 195 PGEIELKDLVAKQLA 209 (222)
Q Consensus 195 P~~~EL~~~I~~~l~ 209 (222)
-+.+++.+.|...+.
T Consensus 219 i~v~D~a~~v~~~l~ 233 (344)
T 2gn4_A 219 ITLDEGVSFVLKSLK 233 (344)
T ss_dssp ECHHHHHHHHHHHHH
T ss_pred EEHHHHHHHHHHHHh
Confidence 345555555555443
No 249
>4emh_A Probable U6 snRNA-associated SM-like protein LSM4; SM fold, mRNA decay, PRE-mRNA splicing, LSM proteins, RNA BI protein; 2.20A {Schizosaccharomyces pombe}
Probab=24.29 E-value=26 Score=26.55 Aligned_cols=18 Identities=11% Similarity=0.327 Sum_probs=9.5
Q ss_pred CCccEEEEEecCCCCchh
Q 027523 63 GYGSTVNINFCASCSYRG 80 (222)
Q Consensus 63 ~~g~tV~i~YC~sCgY~~ 80 (222)
..|-+|.|+.-...-|++
T Consensus 24 ~igk~V~V~Lk~G~~~~G 41 (105)
T 4emh_A 24 TQGRPILVELKNGETFNG 41 (105)
T ss_dssp --CCEEEEEETTSCEEEE
T ss_pred hCCCEEEEEECCCCEEEE
Confidence 355677776665554444
No 250
>2jfq_A Glutamate racemase; cell WALL, isomerase, cell shape, peptidoglycan synthesis, peptidoglycan biosynthesis; HET: DGL; 2.15A {Staphylococcus aureus}
Probab=24.27 E-value=68 Score=27.53 Aligned_cols=14 Identities=21% Similarity=0.359 Sum_probs=8.5
Q ss_pred HHHHHHHHhCCCce
Q 027523 84 TMKRMLETQFPGID 97 (222)
Q Consensus 84 ~lk~~L~~~yP~i~ 97 (222)
.+.+.|.+..|+.+
T Consensus 36 tv~~~i~~~~P~~~ 49 (286)
T 2jfq_A 36 TVAKEIMRQLPNET 49 (286)
T ss_dssp HHHHHHHHHCTTCC
T ss_pred HHHHHHHHHCCCcc
Confidence 34556666677764
No 251
>3hju_A Monoglyceride lipase; alpha/beta hydrolase, hydrolase, serine esterase; 2.20A {Homo sapiens}
Probab=24.10 E-value=1.6e+02 Score=23.54 Aligned_cols=15 Identities=27% Similarity=0.217 Sum_probs=10.8
Q ss_pred chhhHHHHHHHHHHh
Q 027523 78 YRGTAITMKRMLETQ 92 (222)
Q Consensus 78 Y~~~f~~lk~~L~~~ 92 (222)
....|..+.+.|.++
T Consensus 72 ~~~~~~~~~~~l~~~ 86 (342)
T 3hju_A 72 HSGRYEELARMLMGL 86 (342)
T ss_dssp CGGGGHHHHHHHHTT
T ss_pred ccchHHHHHHHHHhC
Confidence 455778888888775
No 252
>2fv8_A H6, RHO-related GTP-binding protein RHOB; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=24.06 E-value=17 Score=28.23 Aligned_cols=14 Identities=14% Similarity=0.159 Sum_probs=9.1
Q ss_pred ChhHHHHHHHHHhc
Q 027523 196 GEIELKDLVAKQLA 209 (222)
Q Consensus 196 ~~~EL~~~I~~~l~ 209 (222)
..+|+++.|.+.+.
T Consensus 186 gi~el~~~l~~~i~ 199 (207)
T 2fv8_A 186 GVREVFETATRAAL 199 (207)
T ss_dssp THHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHH
Confidence 56777777666553
No 253
>3qfa_C Thioredoxin; protein-protein complex, rossmann fold, HO pyridine nucleotide disulfide oxidoreductase, electron TRAN oxidoreductase; HET: FAD; 2.20A {Homo sapiens} PDB: 3qfb_C*
Probab=24.04 E-value=1.9e+02 Score=20.16 Aligned_cols=34 Identities=9% Similarity=0.017 Sum_probs=23.3
Q ss_pred cEEEEEecCCCCchhhHHHHHHHHHHhCCCceee
Q 027523 66 STVNINFCASCSYRGTAITMKRMLETQFPGIDVV 99 (222)
Q Consensus 66 ~tV~i~YC~sCgY~~~f~~lk~~L~~~yP~i~V~ 99 (222)
..|-..|=..|++=+.+...-+.+.++|+++.+.
T Consensus 33 ~vlv~F~a~wC~~C~~~~p~l~~l~~~~~~v~~~ 66 (116)
T 3qfa_C 33 LVVVDFSATWCGPSKMIKPFFHSLSEKYSNVIFL 66 (116)
T ss_dssp CEEEEEECTTCHHHHHHHHHHHHHHTTCTTSEEE
T ss_pred EEEEEEECCCCHHHHHHHHHHHHHHHHCCCCEEE
Confidence 4555555566877677776667788889997654
No 254
>4eo0_A Attachment protein G3P; filamentuos phage, infection, pilus binding, gene-3-protein, receptor binding, N-pilus; 1.61A {Enterobacteria phage ike}
Probab=23.83 E-value=18 Score=27.93 Aligned_cols=10 Identities=40% Similarity=0.717 Sum_probs=1.4
Q ss_pred CCCCCCCCCC
Q 027523 31 PPKSASHHHH 40 (222)
Q Consensus 31 ~~~~~~~~~~ 40 (222)
+-|.||||||
T Consensus 106 svpdhhhhhh 115 (115)
T 4eo0_A 106 SVPDHHHHHH 115 (115)
T ss_dssp ECC-------
T ss_pred cCCcccccCC
Confidence 3455555543
No 255
>3p4t_A Putative acyl-COA dehydrogenase; ssgcid, structural genomics, seattle structural genomics CEN infectious disease, oxidoreductase; HET: FAO; 1.70A {Mycobacterium smegmatis} PDB: 3oib_A*
Probab=23.64 E-value=18 Score=31.91 Aligned_cols=12 Identities=17% Similarity=0.207 Sum_probs=6.2
Q ss_pred HHHHHHHHHhCC
Q 027523 83 ITMKRMLETQFP 94 (222)
Q Consensus 83 ~~lk~~L~~~yP 94 (222)
+.+++++++..+
T Consensus 35 ~~~r~~~~~~~~ 46 (403)
T 3p4t_A 35 KTVRAFAEREVL 46 (403)
T ss_dssp HHHHHHHHHHTT
T ss_pred HHHHHHHHHhCc
Confidence 444555555553
No 256
>2kk8_A Uncharacterized protein AT4G05270; solution arabidopsis thaliana, uncharacterized putative protein, NESG, structural genomics; NMR {Arabidopsis thaliana}
Probab=23.58 E-value=90 Score=21.73 Aligned_cols=25 Identities=24% Similarity=0.365 Sum_probs=16.6
Q ss_pred ccEEEEEecCCCCchhhHHHHHHHHHHhC
Q 027523 65 GSTVNINFCASCSYRGTAITMKRMLETQF 93 (222)
Q Consensus 65 g~tV~i~YC~sCgY~~~f~~lk~~L~~~y 93 (222)
|.+..+..-. ..+-.++|+.|+++.
T Consensus 20 g~~~~l~v~~----~~TV~~LK~~I~~~~ 44 (84)
T 2kk8_A 20 GSSFELEVDY----RDTLLVVKQKIERSQ 44 (84)
T ss_dssp SCEEEEEECT----TSBHHHHHHHHHHHH
T ss_pred CcEEEEEECC----CChHHHHHHHHHHHH
Confidence 4555555333 456789999998884
No 257
>2vlu_A Thioredoxin, thioredoxin H isoform 2.; oxidoreductase, thioredoxin-fold, protein disulfide reductase; 1.70A {Hordeum vulgare var} PDB: 2vlt_A 2vlv_A 2iwt_A*
Probab=23.40 E-value=1.8e+02 Score=19.91 Aligned_cols=31 Identities=23% Similarity=0.228 Sum_probs=22.8
Q ss_pred EEEEEECCeEeEeeeccCCCCChhHHHHHHHHHhc
Q 027523 175 AFEVYCNDDLVFSKLKEGRFPGEIELKDLVAKQLA 209 (222)
Q Consensus 175 aFEV~vng~LV~SKl~~grfP~~~EL~~~I~~~l~ 209 (222)
.|-++-||+.++ +.. |.. .++|.+.|++.+.
T Consensus 90 t~~~~~~G~~~~-~~~-G~~--~~~l~~~l~~~l~ 120 (122)
T 2vlu_A 90 TFLFMKEGDVKD-RVV-GAI--KEELTAKVGLHAA 120 (122)
T ss_dssp EEEEEETTEEEE-EEE-SSC--HHHHHHHHHHHHS
T ss_pred EEEEEeCCEEEE-EEe-CcC--HHHHHHHHHHHhc
Confidence 477778999885 333 433 8899999998875
No 258
>4emk_A U6 snRNA-associated SM-like protein LSM5; SM fold, mRNA decay and PRE-mRNA splicing, LSM proteins, RNA protein; 2.30A {Schizosaccharomyces pombe} PDB: 3swn_A
Probab=23.37 E-value=7 Score=29.19 Aligned_cols=12 Identities=17% Similarity=0.202 Sum_probs=5.8
Q ss_pred CccEEEEEecCC
Q 027523 64 YGSTVNINFCAS 75 (222)
Q Consensus 64 ~g~tV~i~YC~s 75 (222)
.+.+|.|..-..
T Consensus 29 l~k~V~V~Lk~g 40 (94)
T 4emk_A 29 IGSNLWVIMKSE 40 (94)
T ss_dssp TTSEEEEEESSS
T ss_pred cCCeEEEEECCC
Confidence 344565554433
No 259
>1vlc_A 3-isopropylmalate dehydrogenase; TM0556, structural genomics PSI, protein structure initiative, joint center for structu genomics; 1.90A {Thermotoga maritima} SCOP: c.77.1.1
Probab=23.26 E-value=16 Score=33.52 Aligned_cols=37 Identities=19% Similarity=0.146 Sum_probs=20.5
Q ss_pred ccccCCccEEEEEecCCCCchhhHHHHHHHHHHhCCCceeecccCCCC
Q 027523 59 VGGIGYGSTVNINFCASCSYRGTAITMKRMLETQFPGIDVVLANYPPP 106 (222)
Q Consensus 59 ~~~~~~g~tV~i~YC~sCgY~~~f~~lk~~L~~~yP~i~V~G~nYPpp 106 (222)
..|-|.|++| -....++=+.+.++| ++.++-+.|+..
T Consensus 18 ipGDGIGpEV----------~~~a~~Vl~a~~~~~-~~~i~~~~~~~G 54 (366)
T 1vlc_A 18 LPGDGIGPEV----------VREALKVLEVVEKKT-GKTFEKVFGHIG 54 (366)
T ss_dssp EEESTHHHHH----------HHHHHHHHHHHHHHH-CCEEEEEECCCT
T ss_pred eCCCCccHHH----------HHHHHHHHHHHHHhc-CCCeEEEEEeCC
Confidence 3444777765 345555555555555 455555556554
No 260
>2wgn_B Inhibitor of cysteine peptidase compnd 3; hydrolase inhibitor, dynamics, peptidase inhibitor, cathepsi hydrolase inhibitor; NMR {Pseudomonas aeruginosa}
Probab=23.24 E-value=98 Score=24.07 Aligned_cols=21 Identities=10% Similarity=0.097 Sum_probs=11.0
Q ss_pred CCccEEEEE--ecCCCCchhhHH
Q 027523 63 GYGSTVNIN--FCASCSYRGTAI 83 (222)
Q Consensus 63 ~~g~tV~i~--YC~sCgY~~~f~ 83 (222)
..|.++.|. =-.+-||+=.+.
T Consensus 40 ~~Ge~~~I~L~~NPTTGY~W~~~ 62 (132)
T 2wgn_B 40 TQGQELVLTLPSNPTTGFRWELR 62 (132)
T ss_dssp CTTCEEEEEECCCTTTSCEEEEE
T ss_pred cCCCEEEEEeCCCCCCCeEEEEe
Confidence 455554444 345667765443
No 261
>3lnc_A Guanylate kinase, GMP kinase; ALS collaborative crystallography, emerald biostructures, ATP-binding, cytoplasm, nucleotide-binding; HET: 5GP; 1.95A {Anaplasma phagocytophilum}
Probab=23.22 E-value=21 Score=28.67 Aligned_cols=9 Identities=22% Similarity=0.431 Sum_probs=3.3
Q ss_pred cccccCCcc
Q 027523 58 IVGGIGYGS 66 (222)
Q Consensus 58 ~~~~~~~g~ 66 (222)
..|+.|.|-
T Consensus 32 l~Gp~GsGK 40 (231)
T 3lnc_A 32 LSSPSGCGK 40 (231)
T ss_dssp EECSCC---
T ss_pred EECCCCCCH
Confidence 445556663
No 262
>2gco_A H9, RHO-related GTP-binding protein RHOC; GTPase,signaling protein, signaling Pro; HET: GNP; 1.40A {Homo sapiens} PDB: 2gcn_A* 2gcp_A* 1z2c_A* 1x86_B 2rgn_C* 1lb1_B 1s1c_A* 3kz1_E* 3lxr_A* 3lwn_A* 3lw8_A* 1cxz_A* 1a2b_A* 1ow3_B* 1ftn_A* 1cc0_A* 3msx_A* 1xcg_B 3t06_B 1tx4_B* ...
Probab=23.19 E-value=59 Score=24.93 Aligned_cols=27 Identities=15% Similarity=0.255 Sum_probs=16.0
Q ss_pred EEEEEecCCCCchhhHHHHHHHHHHhCC
Q 027523 67 TVNINFCASCSYRGTAITMKRMLETQFP 94 (222)
Q Consensus 67 tV~i~YC~sCgY~~~f~~lk~~L~~~yP 94 (222)
.++|..+...+-.+.-. +.++...+++
T Consensus 25 ~~ki~vvG~~~~GKSsl-i~~l~~~~~~ 51 (201)
T 2gco_A 25 RKKLVIVGDGACGKTCL-LIVFSKDQFP 51 (201)
T ss_dssp EEEEEEEESTTSSHHHH-HHHHHHSSCC
T ss_pred ceEEEEECCCCCCHHHH-HHHHHhCcCC
Confidence 67788877777655533 3445555553
No 263
>3con_A GTPase NRAS; structural genomics consortium, SGC, GDP, oncogene, disease mutation, golgi apparatus, GTP-binding, lipoprotein membrane, methylation; HET: GDP; 1.65A {Homo sapiens} PDB: 2pmx_A* 3gft_A* 4q21_A*
Probab=23.11 E-value=39 Score=25.35 Aligned_cols=16 Identities=0% Similarity=0.005 Sum_probs=10.5
Q ss_pred cEEEEEecCCCCchhh
Q 027523 66 STVNINFCASCSYRGT 81 (222)
Q Consensus 66 ~tV~i~YC~sCgY~~~ 81 (222)
.+++|..+...|-.+.
T Consensus 20 ~~~ki~vvG~~~~GKS 35 (190)
T 3con_A 20 TEYKLVVVGAGGVGKS 35 (190)
T ss_dssp EEEEEEEECSTTSSHH
T ss_pred ceeEEEEECcCCCCHH
Confidence 4577777777665554
No 264
>2y8u_A Chitin deacetylase; hydrolase; 1.99A {Emericella nidulans}
Probab=23.06 E-value=57 Score=26.99 Aligned_cols=15 Identities=7% Similarity=-0.006 Sum_probs=6.7
Q ss_pred CchhhHHHHHHHHHH
Q 027523 77 SYRGTAITMKRMLET 91 (222)
Q Consensus 77 gY~~~f~~lk~~L~~ 91 (222)
|+...+.++-..|++
T Consensus 42 Gp~~~~~~il~iL~~ 56 (230)
T 2y8u_A 42 GPSEYTPQLLDLLSR 56 (230)
T ss_dssp CCCTTHHHHHHHHHH
T ss_pred CchhhHHHHHHHHHH
Confidence 333444444444433
No 265
>2znm_A Thiol:disulfide interchange protein DSBA; thioredoxin fold, DSBA-like, oxidoreductase; 2.30A {Neisseria meningitidis serogroup B} PDB: 3dvx_A
Probab=23.05 E-value=2.5e+02 Score=21.27 Aligned_cols=39 Identities=18% Similarity=0.031 Sum_probs=23.0
Q ss_pred cEEEEEecCCCCchhhHHHHHHHHHHhCCCceeecccCCC
Q 027523 66 STVNINFCASCSYRGTAITMKRMLETQFPGIDVVLANYPP 105 (222)
Q Consensus 66 ~tV~i~YC~sCgY~~~f~~lk~~L~~~yP~i~V~G~nYPp 105 (222)
.+|.+.+=..|+|=..+...-+.+.++||+ +|+-..+|.
T Consensus 24 ~~i~~f~d~~Cp~C~~~~~~l~~l~~~~~~-~v~~~~~p~ 62 (195)
T 2znm_A 24 IEVLEFFGYFCVHCHHFDPLLLKLGKALPS-DAYLRTEHV 62 (195)
T ss_dssp EEEEEEECTTSCCTTSSCHHHHHHHHHSCT-TEEEEEEEC
T ss_pred cEEEEEECCCChhHHHHhHHHHHHHHHCCC-ceEEEEecc
Confidence 466666666676655555444567777886 344344554
No 266
>3bux_B E3 ubiquitin-protein ligase CBL; TKB, signal transduction, proto-oncogene, complex, ATP-binding, glycoprotein, kinase, membrane, nucleotide-binding; HET: PTR; 1.35A {Homo sapiens} SCOP: a.39.1.7 a.48.1.1 d.93.1.1 PDB: 1yvh_A* 3bun_B* 3buo_B* 3bum_B* 3buw_B* 3ob1_B* 3ob2_B* 3plf_B* 2cbl_A* 1b47_A 3pfv_A*
Probab=23.04 E-value=23 Score=32.38 Aligned_cols=8 Identities=50% Similarity=0.924 Sum_probs=0.0
Q ss_pred CCCCCCCC
Q 027523 33 KSASHHHH 40 (222)
Q Consensus 33 ~~~~~~~~ 40 (222)
|+||||||
T Consensus 13 ~~~~~~~~ 20 (329)
T 3bux_B 13 PHHHHHHH 20 (329)
T ss_dssp --------
T ss_pred cccccccc
Confidence 44444433
No 267
>3d1g_A DNA polymerase III subunit beta; chemical probe, DNA sliding clamp, DNA replication, rational drug design, antibiotic target, transferase; HET: DNA 322; 1.64A {Escherichia coli} SCOP: d.131.1.1 d.131.1.1 d.131.1.1 PDB: 1mmi_A* 1unn_A* 2pol_A* 3bep_A* 3d1e_A* 3d1f_A* 1ok7_A* 3q4j_A* 3q4k_A* 3qsb_A* 3q4l_A* 2xur_A* 1jql_A* 1jqj_A* 3f1v_A* 3pwe_A*
Probab=22.96 E-value=91 Score=27.63 Aligned_cols=26 Identities=31% Similarity=0.416 Sum_probs=20.1
Q ss_pred cEEEEEECCeEeEeeeccCCCCChhH
Q 027523 174 GAFEVYCNDDLVFSKLKEGRFPGEIE 199 (222)
Q Consensus 174 GaFEV~vng~LV~SKl~~grfP~~~E 199 (222)
+...+..++..+.||+-+|.||+.+.
T Consensus 221 ~~i~f~~~~~~~~srLidg~fPdy~~ 246 (366)
T 3d1g_A 221 NNIRAHVGDFIFTSKLVDGRFPDYRR 246 (366)
T ss_dssp SEEEEEETTEEEEEECCSSCCCCHHH
T ss_pred CEEEEEECCEEEEEEEecccCCChhh
Confidence 34444556778889999999999876
No 268
>2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B}
Probab=22.90 E-value=32 Score=26.32 Aligned_cols=8 Identities=0% Similarity=-0.296 Sum_probs=3.5
Q ss_pred cCCCCchh
Q 027523 73 CASCSYRG 80 (222)
Q Consensus 73 C~sCgY~~ 80 (222)
+..+|-.|
T Consensus 42 ~G~~G~GK 49 (149)
T 2kjq_A 42 WGEEGAGK 49 (149)
T ss_dssp ESSSTTTT
T ss_pred ECCCCCCH
Confidence 44444444
No 269
>2l7r_A Ubiquitin-like protein FUBI; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium, NESG; NMR {Homo sapiens}
Probab=22.83 E-value=39 Score=23.97 Aligned_cols=15 Identities=13% Similarity=0.093 Sum_probs=11.8
Q ss_pred hhhHHHHHHHHHHhC
Q 027523 79 RGTAITMKRMLETQF 93 (222)
Q Consensus 79 ~~~f~~lk~~L~~~y 93 (222)
..+-.++|+.|+++.
T Consensus 37 ~~TV~~LK~~I~~~~ 51 (93)
T 2l7r_A 37 QETVAQIKAHVASLE 51 (93)
T ss_dssp SCBHHHHHHHHHHHH
T ss_pred CCcHHHHHHHHHHHh
Confidence 457789999998874
No 270
>3auf_A Glycinamide ribonucleotide transformylase 1; structural genomics, riken structural genomics/proteomics in RSGI, rossmann fold; 2.07A {Symbiobacterium toebii}
Probab=22.78 E-value=1e+02 Score=25.97 Aligned_cols=30 Identities=7% Similarity=-0.177 Sum_probs=15.8
Q ss_pred EEEEEecCCCCchhhHHHHHHHHHHhCCCce
Q 027523 67 TVNINFCASCSYRGTAITMKRMLETQFPGID 97 (222)
Q Consensus 67 tV~i~YC~sCgY~~~f~~lk~~L~~~yP~i~ 97 (222)
.++|.++.| |....++.+-+.+.+..-+.+
T Consensus 22 ~~rI~~l~S-G~g~~~~~~l~~l~~~~~~~~ 51 (229)
T 3auf_A 22 MIRIGVLIS-GSGTNLQAILDGCREGRIPGR 51 (229)
T ss_dssp CEEEEEEES-SCCHHHHHHHHHHHTTSSSEE
T ss_pred CcEEEEEEe-CCcHHHHHHHHHHHhCCCCCe
Confidence 356777654 223455666566655543333
No 271
>2grj_A Dephospho-COA kinase; TM1387, EC 2.7.1.24, dephosphocoenzyme kinase, structural genomics, joint center for structural GE JCSG; HET: ADP COD; 2.60A {Thermotoga maritima}
Probab=22.77 E-value=13 Score=30.18 Aligned_cols=9 Identities=44% Similarity=0.889 Sum_probs=6.2
Q ss_pred cccccCCcc
Q 027523 58 IVGGIGYGS 66 (222)
Q Consensus 58 ~~~~~~~g~ 66 (222)
..|++|+|-
T Consensus 17 ltG~~GSGK 25 (192)
T 2grj_A 17 VTGKIGTGK 25 (192)
T ss_dssp EECSTTSSH
T ss_pred EECCCCCCH
Confidence 457778874
No 272
>2kdi_A Ubiquitin, vacuolar protein sorting-associated protein 27 fusion protein; ubiquitin interacting motif, UIM, protein domain interface; NMR {Saccharomyces cerevisiae}
Probab=22.74 E-value=95 Score=22.95 Aligned_cols=26 Identities=15% Similarity=0.174 Sum_probs=16.8
Q ss_pred CccEEEEEecCCCCchhhHHHHHHHHHHhC
Q 027523 64 YGSTVNINFCASCSYRGTAITMKRMLETQF 93 (222)
Q Consensus 64 ~g~tV~i~YC~sCgY~~~f~~lk~~L~~~y 93 (222)
.|.++.+..- -...-.++|+.|+++.
T Consensus 18 ~G~~~~l~v~----~~~TV~~LK~~I~~~~ 43 (114)
T 2kdi_A 18 TGKTITLEVE----SSDTIDNVKSKIQDKE 43 (114)
T ss_dssp TCCEEEEECC----TTCBHHHHHHHHHHHH
T ss_pred CCcEEEEEEC----CCCcHHHHHHHHHHHH
Confidence 3455555422 2457789999998874
No 273
>2j8k_A NP275-NP276; pentapeptide repeat protein, PRP, right handed quadrilateral beta helix, RHQBH, toxin; HET: MES; 1.5A {Nostoc punctiforme} SCOP: b.80.8.1 PDB: 2j8i_A
Probab=22.68 E-value=24 Score=28.65 Aligned_cols=6 Identities=67% Similarity=1.276 Sum_probs=0.0
Q ss_pred CCCCCC
Q 027523 35 ASHHHH 40 (222)
Q Consensus 35 ~~~~~~ 40 (222)
||||||
T Consensus 5 ~~~~~~ 10 (201)
T 2j8k_A 5 HHHHHH 10 (201)
T ss_dssp ------
T ss_pred cccccc
Confidence 344433
No 274
>1veh_A NIFU-like protein hirip5; structural genomics, mouse cDNA, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Mus musculus} SCOP: d.52.8.1
Probab=22.55 E-value=50 Score=24.50 Aligned_cols=33 Identities=21% Similarity=0.505 Sum_probs=22.3
Q ss_pred ccEEEEEe---cCCCCchhhH--HHHHHHHHHhCCCce
Q 027523 65 GSTVNINF---CASCSYRGTA--ITMKRMLETQFPGID 97 (222)
Q Consensus 65 g~tV~i~Y---C~sCgY~~~f--~~lk~~L~~~yP~i~ 97 (222)
+.+|.+.+ |.+|.....= .-+++.|+++.|++.
T Consensus 44 ~g~V~v~l~GaC~gC~ss~~Tlk~gIE~~L~~~vpev~ 81 (92)
T 1veh_A 44 DGIVRLKLQGSCTSCPSSIITLKSGIQNMLQFYIPEVE 81 (92)
T ss_dssp TTEEEECCCCCCCCCHHHHHHTHHHHHHHHHHHCSSCC
T ss_pred CCEEEEEEeecCCCCCCcHHHHHHHHHHHHHHHCCCCC
Confidence 35788887 7777544332 235678888899973
No 275
>4ar0_A Type IV pilus biogenesis and competence protein P; transport, secretin type II secretion system; NMR {Neisseria meningitidis}
Probab=22.51 E-value=96 Score=23.82 Aligned_cols=10 Identities=20% Similarity=0.514 Sum_probs=5.7
Q ss_pred CCccEEEEEe
Q 027523 63 GYGSTVNINF 72 (222)
Q Consensus 63 ~~g~tV~i~Y 72 (222)
..|.+|.+.+
T Consensus 29 ~~G~~isLnf 38 (128)
T 4ar0_A 29 FTGRKISLDF 38 (128)
T ss_dssp CSSCEEEEEE
T ss_pred CCCCceEEEE
Confidence 3566666654
No 276
>2q73_A MAZG, hypothetical protein; NTP-ppase, hydrolase; 1.80A {Vibrio SP} PDB: 2q9l_A
Probab=22.49 E-value=18 Score=26.49 Aligned_cols=6 Identities=50% Similarity=0.933 Sum_probs=0.0
Q ss_pred CCCCCC
Q 027523 34 SASHHH 39 (222)
Q Consensus 34 ~~~~~~ 39 (222)
.|||||
T Consensus 94 ~~~~~~ 99 (100)
T 2q73_A 94 RHHHHH 99 (100)
T ss_dssp ------
T ss_pred CccccC
Confidence 344443
No 277
>2rhc_B Actinorhodin polyketide ketoreductase; oxidoreductase, combinatorial biosynthesis, short chain dehydrogenase/reductase; HET: NAP EMO; 2.10A {Streptomyces coelicolor} SCOP: c.2.1.2 PDB: 2rh4_A* 1w4z_A* 3csd_B* 3qrw_A* 3ri3_B* 2rhr_B* 1x7g_A* 1x7h_A* 1xr3_A*
Probab=22.47 E-value=38 Score=27.99 Aligned_cols=20 Identities=25% Similarity=0.416 Sum_probs=14.2
Q ss_pred cCCCCChhHHHHHHHHHhcC
Q 027523 191 EGRFPGEIELKDLVAKQLAS 210 (222)
Q Consensus 191 ~grfP~~~EL~~~I~~~l~~ 210 (222)
.+|+-+++|+.+.+...+.+
T Consensus 239 ~~r~~~~~dvA~~v~~l~s~ 258 (277)
T 2rhc_B 239 IGRYVQPSEVAEMVAYLIGP 258 (277)
T ss_dssp TSSCBCHHHHHHHHHHHHSG
T ss_pred CCCCcCHHHHHHHHHHHhCc
Confidence 35677888888887776643
No 278
>2b5x_A YKUV protein, TRXY; thioredoxin-like, oxidoreductase; NMR {Bacillus subtilis} SCOP: c.47.1.10 PDB: 2b5y_A
Probab=22.37 E-value=2e+02 Score=19.97 Aligned_cols=28 Identities=25% Similarity=0.178 Sum_probs=20.5
Q ss_pred ECCeEeEeeeccCCCCChhHHHHHHHHHhcC
Q 027523 180 CNDDLVFSKLKEGRFPGEIELKDLVAKQLAS 210 (222)
Q Consensus 180 vng~LV~SKl~~grfP~~~EL~~~I~~~l~~ 210 (222)
-||+.++... | ..+.+++.+.|++.+..
T Consensus 119 ~~G~i~~~~~--g-~~~~~~l~~~l~~~l~~ 146 (148)
T 2b5x_A 119 KTGQLRHFQA--G-GSGMKMLEKRVNRVLAE 146 (148)
T ss_dssp TTCBEEEEEE--S-CSTTHHHHHHHHHHHTT
T ss_pred CCCcEEEEec--C-CCCHHHHHHHHHHHHhc
Confidence 4788887442 2 35788999999998764
No 279
>2kcc_A Acetyl-COA carboxylase 2; biotinoyl domain, BCCP, BIRA, biotinylation, alternative splicing, ATP-binding, biotin, fatty acid biosynthesis, ligase; NMR {Homo sapiens}
Probab=22.35 E-value=36 Score=23.79 Aligned_cols=6 Identities=33% Similarity=0.506 Sum_probs=2.3
Q ss_pred CCCCCC
Q 027523 33 KSASHH 38 (222)
Q Consensus 33 ~~~~~~ 38 (222)
|.||||
T Consensus 77 ~~~~~~ 82 (84)
T 2kcc_A 77 LEHHHH 82 (84)
T ss_dssp SCCCCC
T ss_pred hhhccc
Confidence 334333
No 280
>3cpt_A Mitogen-activated protein kinase kinase 1- interacting protein 1; scaffold, complex, alpha/beta, endosome, membrane, lysosome; 1.90A {Homo sapiens} SCOP: d.110.7.1 PDB: 1sko_A 2zl1_A 1vet_A 1veu_A
Probab=22.33 E-value=18 Score=29.27 Aligned_cols=16 Identities=31% Similarity=0.480 Sum_probs=9.2
Q ss_pred hHHHHHHHHH---HhCCCc
Q 027523 81 TAITMKRMLE---TQFPGI 96 (222)
Q Consensus 81 ~f~~lk~~L~---~~yP~i 96 (222)
..++++++|+ ++++|+
T Consensus 20 m~~~Lq~~L~~ll~rv~Gl 38 (143)
T 3cpt_A 20 SADDLKRFLYKKLPSVEGL 38 (143)
T ss_dssp --CHHHHHHHHHGGGSTTE
T ss_pred hHHHHHHHHHHHHhccCCe
Confidence 3467777754 456775
No 281
>2ekg_A Proline dehydrogenase/delta-1-pyrroline-5-carboxy dehydrogenase; flavoenzyme, prodh, beta-alpha-barrel inhibitor, inactivation, flavocyanine; HET: LYX FAD; 1.90A {Thermus thermophilus} PDB: 2g37_A*
Probab=22.23 E-value=19 Score=32.39 Aligned_cols=13 Identities=15% Similarity=0.095 Sum_probs=5.6
Q ss_pred HHHHHHhhhhHHH
Q 027523 108 PKRLLAKVVPAVQ 120 (222)
Q Consensus 108 ~k~~Lak~v~~~q 120 (222)
+..++.++-.+++
T Consensus 129 ~~~~~~rl~~i~~ 141 (327)
T 2ekg_A 129 EDLALALLREVLR 141 (327)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 4444444444333
No 282
>1mgp_A Hypothetical protein TM841; two domain structure with mixed alpha/beta structures in BOTH domains, structural genomics; HET: PLM; 2.00A {Thermotoga maritima} SCOP: c.119.1.1 PDB: 1vpv_A*
Probab=22.18 E-value=34 Score=30.27 Aligned_cols=16 Identities=13% Similarity=-0.070 Sum_probs=12.4
Q ss_pred EEEEEecCCCCchhhH
Q 027523 67 TVNINFCASCSYRGTA 82 (222)
Q Consensus 67 tV~i~YC~sCgY~~~f 82 (222)
++.|.-..+|...+.+
T Consensus 27 ki~IvtDSt~dL~~e~ 42 (313)
T 1mgp_A 27 KVKILVDSTADVPFSW 42 (313)
T ss_dssp CEEEEEEGGGCCCTTH
T ss_pred CEEEEEECCCCCCHHH
Confidence 6888888888877654
No 283
>2l72_A Tgadf, actin depolymerizing factor, putative; ADF/cofilin, actin binding, protein binding; NMR {Toxoplasma gondii}
Probab=22.13 E-value=19 Score=28.21 Aligned_cols=8 Identities=13% Similarity=0.069 Sum_probs=3.4
Q ss_pred hHHHHHHH
Q 027523 81 TAITMKRM 88 (222)
Q Consensus 81 ~f~~lk~~ 88 (222)
.|+++.+.
T Consensus 66 ~~~el~~~ 73 (139)
T 2l72_A 66 NADEFRGA 73 (139)
T ss_dssp HHHHHHHH
T ss_pred CHHHHHHh
Confidence 34444443
No 284
>2j9u_B VPS36, vacuolar protein sorting-associated protein 36; zinc-finger, metal-binding, protein transport; 2.00A {Saccharomyces cerevisiae} SCOP: g.41.11.1
Probab=22.13 E-value=11 Score=27.61 Aligned_cols=24 Identities=13% Similarity=0.285 Sum_probs=19.9
Q ss_pred EEEEecCCCCchhhHHHHHHHHHH
Q 027523 68 VNINFCASCSYRGTAITMKRMLET 91 (222)
Q Consensus 68 V~i~YC~sCgY~~~f~~lk~~L~~ 91 (222)
-.+--|.+||.+..|+.+++.|++
T Consensus 38 ~~lPpC~aCGIkP~~~~i~~sI~~ 61 (76)
T 2j9u_B 38 LPTPICINCGVPADYELTKSSINC 61 (76)
T ss_dssp SSCCBCTTTCCBCCHHHHGGGCBC
T ss_pred CCCCcccccCccCCHHHHHHHHhc
Confidence 456679999999999999886655
No 285
>3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A*
Probab=22.10 E-value=28 Score=31.30 Aligned_cols=27 Identities=15% Similarity=0.297 Sum_probs=15.5
Q ss_pred CCccEEEEEecCCCCchhhHHHHHHHHHH
Q 027523 63 GYGSTVNINFCASCSYRGTAITMKRMLET 91 (222)
Q Consensus 63 ~~g~tV~i~YC~sCgY~~~f~~lk~~L~~ 91 (222)
|..+.+.|.|.. -|+..+..++..+++
T Consensus 40 ~~~~~~~i~y~~--~y~~~~~~~r~~~~~ 66 (349)
T 3q7a_A 40 GPNPVVPIMYSE--EYKDAMDYFRAIAAK 66 (349)
T ss_dssp CSSCSSCBCCCH--HHHHHHHHHHHHHHT
T ss_pred CCCCeeeeeeCH--HHHHHHHHHHHHHHh
Confidence 345778887665 345555555544443
No 286
>2hup_A RAS-related protein RAB-43; G-protein, GDP, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.05A {Homo sapiens}
Probab=22.08 E-value=22 Score=27.67 Aligned_cols=14 Identities=7% Similarity=0.067 Sum_probs=6.7
Q ss_pred EEEEEecCCCCchh
Q 027523 67 TVNINFCASCSYRG 80 (222)
Q Consensus 67 tV~i~YC~sCgY~~ 80 (222)
.++|..+...+-.+
T Consensus 29 ~~ki~vvG~~~vGK 42 (201)
T 2hup_A 29 LFKLVLVGDASVGK 42 (201)
T ss_dssp EEEEEEEECTTSSH
T ss_pred ceEEEEECcCCCCH
Confidence 44555555544433
No 287
>2iss_D Glutamine amidotransferase subunit PDXT; (beta/alpha)8-barrel, alpha/beta three layer sandwich, lyase transferase; HET: 5RP; 2.90A {Thermotoga maritima}
Probab=22.07 E-value=56 Score=26.17 Aligned_cols=15 Identities=20% Similarity=0.403 Sum_probs=9.6
Q ss_pred hhHHHHHHHHHHhhh
Q 027523 153 FGSIASTWLIGNFLQ 167 (222)
Q Consensus 153 ~~~~~~~~~~~n~l~ 167 (222)
+++|.+..+++..+.
T Consensus 95 lGIC~G~QlL~~~~g 109 (208)
T 2iss_D 95 FATCAGVILLAKRIK 109 (208)
T ss_dssp EEETHHHHHHEEEEC
T ss_pred EEECHHHHHHHHHcC
Confidence 367777776666554
No 288
>2ls0_1 Zoocin A endopeptidase; specificity, hydrolase; NMR {Streptococcus equi subsp}
Probab=22.05 E-value=44 Score=26.60 Aligned_cols=9 Identities=56% Similarity=1.047 Sum_probs=3.5
Q ss_pred CCCCCCCCC
Q 027523 37 HHHHKPPIP 45 (222)
Q Consensus 37 ~~~~~~~~~ 45 (222)
|||||...|
T Consensus 6 ~~~~~~~~~ 14 (128)
T 2ls0_1 6 HHHHHGSEP 14 (128)
T ss_dssp CCCCCCSCC
T ss_pred cccccCCCC
Confidence 333343443
No 289
>1qgv_A Spliceosomal protein U5-15KD; snRNP, thioredoxin, transcription; 1.40A {Homo sapiens} SCOP: c.47.1.8 PDB: 1syx_A 1pqn_A
Probab=21.65 E-value=1.4e+02 Score=22.01 Aligned_cols=41 Identities=7% Similarity=0.116 Sum_probs=28.1
Q ss_pred EEEEEECCeEeEee-------eccCCCCChhHHHHHHHHHhcCCCCCC
Q 027523 175 AFEVYCNDDLVFSK-------LKEGRFPGEIELKDLVAKQLASSRLVD 215 (222)
Q Consensus 175 aFEV~vng~LV~SK-------l~~grfP~~~EL~~~I~~~l~~~~~~~ 215 (222)
.+-++-||+.|... ...|..++.+|+.+.|++.+...+..+
T Consensus 80 t~~~~~~G~~v~~~~g~~~~~~~~g~~~~~~~l~~~i~~~~~~~~~~~ 127 (142)
T 1qgv_A 80 TVMFFFRNKHIMIDLGTGNNNKINWAMEDKQEMVDIIETVYRGARKGR 127 (142)
T ss_dssp EEEEEETTEEEEEECC------CCSCCSCHHHHHHHHHHHHHHHTTTC
T ss_pred EEEEEECCcEEEEecCCCCcceeeeecCcHHHHHHHHHHHHHHHhcCC
Confidence 35566788888632 124567789999999999887655444
No 290
>4hnl_A Mandelate racemase/muconate lactonizing enzyme; dehydratase, magnesium binding, enzyme function initiative,; 1.48A {Enterococcus gallinarum EG2} PDB: 3s47_A
Probab=21.60 E-value=20 Score=32.46 Aligned_cols=25 Identities=12% Similarity=0.375 Sum_probs=12.6
Q ss_pred hhhhHHHHHHH--HHHhhccccccccC
Q 027523 114 KVVPAVQIGVI--GIVVAGEQIFPMLG 138 (222)
Q Consensus 114 k~v~~~q~~~i--~~i~~G~~iF~~lG 138 (222)
.+++.+.+++. ..=..|.-++..||
T Consensus 110 ~A~said~ALwDl~gK~~g~Pl~~LLG 136 (421)
T 4hnl_A 110 NAISGIDMALWDIKGQLADMPLYQLLG 136 (421)
T ss_dssp HHHHHHHHHHHHHHHHHHTSBHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHhCCCHHHhcC
Confidence 34444555443 22344666666664
No 291
>2wkq_A NPH1-1, RAS-related C3 botulinum toxin substrate 1; transferase, cell adhesion, nucleotide-binding, protein engineering, RAS superfamily LOV2; HET: GTP FMN; 1.60A {Avena sativa} PDB: 2wkr_A* 2wkp_A*
Probab=21.54 E-value=22 Score=29.42 Aligned_cols=6 Identities=33% Similarity=0.495 Sum_probs=3.2
Q ss_pred EEEecC
Q 027523 69 NINFCA 74 (222)
Q Consensus 69 ~i~YC~ 74 (222)
+|.||+
T Consensus 35 ~i~~~N 40 (332)
T 2wkq_A 35 PIIFAS 40 (332)
T ss_dssp CEEEEC
T ss_pred CEEEee
Confidence 455655
No 292
>3qtc_A Pyrrolysyl-tRNA synthetase; aminoacyl-tRNA synthetase, ATP B O-methyl tyrosine binding, magnesium binding, aminoacylatio esterification; HET: 0A1 ANP; 1.75A {Methanosarcina mazei} PDB: 2q7e_A* 2q7g_A* 2q7h_A* 2zim_A* 2zin_A* 2e3c_A* 2zcd_A* 2zce_A* 2zio_A* 3vqv_A* 3vqw_A* 3vqx_A* 3vqy_A*
Probab=21.54 E-value=20 Score=30.87 Aligned_cols=14 Identities=14% Similarity=0.271 Sum_probs=9.2
Q ss_pred ChhHHHHHHHHHhc
Q 027523 196 GEIELKDLVAKQLA 209 (222)
Q Consensus 196 ~~~EL~~~I~~~l~ 209 (222)
+..|++..+.+.+.
T Consensus 191 ~f~elkg~le~ll~ 204 (290)
T 3qtc_A 191 TRENLESIITDFLN 204 (290)
T ss_dssp CHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 56677777776653
No 293
>2bu3_A ALR0975 protein; phytochelatin synthase, PCS, acyl-enzyme intermedia nostoc, glutathione metabolism, cysteine protease, transfer; HET: 3GC; 1.4A {Anabaena SP} SCOP: d.3.1.14 PDB: 2btw_A* 2btw_B
Probab=21.52 E-value=20 Score=31.48 Aligned_cols=16 Identities=19% Similarity=0.270 Sum_probs=12.9
Q ss_pred CChhHHHHHHHHHhcC
Q 027523 195 PGEIELKDLVAKQLAS 210 (222)
Q Consensus 195 P~~~EL~~~I~~~l~~ 210 (222)
-+.+++.+.|.+.+..
T Consensus 158 ~sl~~fR~~v~~~~~~ 173 (254)
T 2bu3_A 158 TNIEDFRKQVAENLKQ 173 (254)
T ss_dssp SCHHHHHHHHHHHHTC
T ss_pred CcHHHHHHHHHHHhCC
Confidence 4789999999998743
No 294
>3q9s_A DNA-binding response regulator; DNA binding protein; 2.40A {Deinococcus radiodurans}
Probab=21.41 E-value=49 Score=26.81 Aligned_cols=12 Identities=8% Similarity=0.130 Sum_probs=5.6
Q ss_pred HHHHHhCCCcee
Q 027523 87 RMLETQFPGIDV 98 (222)
Q Consensus 87 ~~L~~~yP~i~V 98 (222)
+.+++.-|++.+
T Consensus 75 ~~~~~~~~Dlvl 86 (249)
T 3q9s_A 75 IKAREDHPDLIL 86 (249)
T ss_dssp HHHHHSCCSEEE
T ss_pred HHHhcCCCCEEE
Confidence 334444466543
No 295
>3lxw_A GTPase IMAP family member 1; immunity, structural genomics consortium, SGC, immune system; HET: GDP; 2.21A {Homo sapiens} PDB: 3v70_A*
Probab=21.33 E-value=23 Score=29.21 Aligned_cols=29 Identities=7% Similarity=0.009 Sum_probs=16.5
Q ss_pred EEEecCCCCc--------hhhHHHHHHHHHHhCCCce
Q 027523 69 NINFCASCSY--------RGTAITMKRMLETQFPGID 97 (222)
Q Consensus 69 ~i~YC~sCgY--------~~~f~~lk~~L~~~yP~i~ 97 (222)
++..+...|+ .....++.+.+...+++.+
T Consensus 71 ~i~liDTPG~~~~~~~~~~~~~~~i~~~~~~~~~~~d 107 (247)
T 3lxw_A 71 HVEVVDTPDIFSSQVSKTDPGCEERGHCYLLSAPGPH 107 (247)
T ss_dssp EEEEEECCSCSSTTHHHHSTTSHHHHHHHHHHTTCCS
T ss_pred EEEEEECCCCCCCCCCcHHHHHHHHHHHHHhcCCCCC
Confidence 4555666676 3344556666655556653
No 296
>3fkq_A NTRC-like two-domain protein; RER070207001320, structural GE joint center for structural genomics, JCSG, protein structu initiative, PSI-2; HET: ATP 2PE; 2.10A {Eubacterium rectale}
Probab=21.30 E-value=68 Score=28.08 Aligned_cols=36 Identities=3% Similarity=0.014 Sum_probs=20.9
Q ss_pred CccEEEEEecCCCCchhhHHHHHHHHHHhCCCceeecccCCC
Q 027523 64 YGSTVNINFCASCSYRGTAITMKRMLETQFPGIDVVLANYPP 105 (222)
Q Consensus 64 ~g~tV~i~YC~sCgY~~~f~~lk~~L~~~yP~i~V~G~nYPp 105 (222)
.+..+++..|+++ +.+.+++++.=+++-+.+++|..
T Consensus 45 ~~~~~~v~~ft~~------e~~~~~~~~~~~dilli~e~~~~ 80 (373)
T 3fkq_A 45 YADKLEVYSFTDE------KNAIESVKEYRIDVLIAEEDFNI 80 (373)
T ss_dssp TTTTEEEEEESCH------HHHHHHHHHHTCSEEEEETTCCC
T ss_pred cCCceEEEEECCH------HHHHHHHhcCCCCEEEEcchhhh
Confidence 3456677766654 44455556665666566666643
No 297
>2ozv_A Hypothetical protein ATU0636; structural genomics, predicted transferase, predicted O-methyltransferase, PFAM PF05175; HET: MSE; 1.70A {Agrobacterium tumefaciens str}
Probab=21.13 E-value=77 Score=26.10 Aligned_cols=37 Identities=8% Similarity=0.057 Sum_probs=22.4
Q ss_pred EEEecCCCCchhhHHHHHHHHHHhCCCceeecccCCCChHHHH
Q 027523 69 NINFCASCSYRGTAITMKRMLETQFPGIDVVLANYPPPLPKRL 111 (222)
Q Consensus 69 ~i~YC~sCgY~~~f~~lk~~L~~~yP~i~V~G~nYPpp~~k~~ 111 (222)
-+..|..+|.- ...+.+++|+.+|+|-...+......
T Consensus 40 VLDlG~G~G~~------~l~la~~~~~~~v~gvDi~~~~~~~a 76 (260)
T 2ozv_A 40 IADLGAGAGAA------GMAVAARLEKAEVTLYERSQEMAEFA 76 (260)
T ss_dssp EEECCSSSSHH------HHHHHHHCTTEEEEEEESSHHHHHHH
T ss_pred EEEeCChHhHH------HHHHHHhCCCCeEEEEECCHHHHHHH
Confidence 35556666653 34556678888888766655444433
No 298
>1lu4_A Soluble secreted antigen MPT53; thioredoxin-like fold, structural genomics, PSI, protein structure initiative; 1.12A {Mycobacterium tuberculosis} SCOP: c.47.1.10
Probab=20.85 E-value=2.1e+02 Score=19.66 Aligned_cols=37 Identities=11% Similarity=0.140 Sum_probs=22.2
Q ss_pred cEEEEEecCCCCchhhHHHHHHHHHHhCCCceeeccc
Q 027523 66 STVNINFCASCSYRGTAITMKRMLETQFPGIDVVLAN 102 (222)
Q Consensus 66 ~tV~i~YC~sCgY~~~f~~lk~~L~~~yP~i~V~G~n 102 (222)
++|-..|-..|++=......=+.+.++|+++.+.+-+
T Consensus 26 ~~lv~f~~~~C~~C~~~~~~l~~~~~~~~~~~~~~v~ 62 (136)
T 1lu4_A 26 PAVLWFWTPWCPFCNAEAPSLSQVAAANPAVTFVGIA 62 (136)
T ss_dssp CEEEEEECTTCHHHHHHHHHHHHHHHHCTTSEEEEEE
T ss_pred EEEEEEECCcChhHHHHHHHHHHHHHHCCCcEEEEEE
Confidence 4555556566765555544445567778887765533
No 299
>4h1z_A Enolase Q92ZS5; dehydratase, magnesium binding site, enzyme function initiat isomerase; 2.01A {Sinorhizobium meliloti} PDB: 2ppg_A
Probab=20.74 E-value=21 Score=32.34 Aligned_cols=14 Identities=7% Similarity=0.278 Sum_probs=9.0
Q ss_pred hHHHHHHHHHhcCC
Q 027523 198 IELKDLVAKQLASS 211 (222)
Q Consensus 198 ~EL~~~I~~~l~~~ 211 (222)
.+.++.||+++.++
T Consensus 219 ~~~v~~vR~~~g~~ 232 (412)
T 4h1z_A 219 AKEMEILRERLGPA 232 (412)
T ss_dssp HHHHHHHHHHHCSS
T ss_pred HHHHHHHHhccCCe
Confidence 45567777777554
No 300
>4gmn_B 60S ribosomal protein L5-like protein; ARM, heat, solenoid, linear motif, nuclear transport, chaper ribosome assembly, RPL11, KAP104; 2.95A {Chaetomium thermophilum}
Probab=20.74 E-value=30 Score=23.35 Aligned_cols=9 Identities=56% Similarity=0.870 Sum_probs=4.6
Q ss_pred CCCCCCCCC
Q 027523 32 PKSASHHHH 40 (222)
Q Consensus 32 ~~~~~~~~~ 40 (222)
+++||||||
T Consensus 41 Kas~~~~~~ 49 (49)
T 4gmn_B 41 KGSHHHHHH 49 (49)
T ss_pred ccccccccC
Confidence 455555543
No 301
>1yqb_A Ubiquilin 3; structural genomics consortium, ubiquitin, ubiquitin-like domain, structural genomics, signaling protein SGC; 2.00A {Homo sapiens} SCOP: d.15.1.1
Probab=20.69 E-value=1.2e+02 Score=21.81 Aligned_cols=15 Identities=20% Similarity=0.302 Sum_probs=11.7
Q ss_pred hhhHHHHHHHHHHhC
Q 027523 79 RGTAITMKRMLETQF 93 (222)
Q Consensus 79 ~~~f~~lk~~L~~~y 93 (222)
..+-.++|+.|+++.
T Consensus 41 ~~TV~~LK~~I~~~~ 55 (100)
T 1yqb_A 41 TCTIQQLKEEISQRF 55 (100)
T ss_dssp TCBHHHHHHHHHHHH
T ss_pred CCcHHHHHHHHHHHH
Confidence 456788999998874
No 302
>4ec6_A Putative uncharacterized protein; GRAM-positive, conjugation, NTF2-like, unknown function; 2.50A {Enterococcus faecalis}
Probab=20.56 E-value=21 Score=29.52 Aligned_cols=6 Identities=50% Similarity=0.994 Sum_probs=0.0
Q ss_pred CCCCCC
Q 027523 38 HHHKPP 43 (222)
Q Consensus 38 ~~~~~~ 43 (222)
|||||.
T Consensus 5 ~~~~~~ 10 (161)
T 4ec6_A 5 HHHHHS 10 (161)
T ss_dssp ------
T ss_pred cccccc
Confidence 333333
No 303
>2v73_A CBM40, putative EXO-alpha-sialidase; carbohydrate-binding module, bacterial pathogen, sialic acid, sugar-binding protein; HET: SIA; 2.2A {Clostridium perfringens}
Probab=20.46 E-value=86 Score=26.28 Aligned_cols=19 Identities=16% Similarity=0.156 Sum_probs=16.7
Q ss_pred CCcEEEEEECCeEeEeeec
Q 027523 172 SSGAFEVYCNDDLVFSKLK 190 (222)
Q Consensus 172 stGaFEV~vng~LV~SKl~ 190 (222)
.++-+.||+||++|+++..
T Consensus 116 ~~~~~~ly~NG~~V~t~~~ 134 (191)
T 2v73_A 116 KGIGAKIFLNGSLVKTVSD 134 (191)
T ss_dssp TTTEEEEEETTEEEEEEEC
T ss_pred CCccEEEEECCEEEEEEec
Confidence 4789999999999999854
No 304
>2lfh_A DNA-binding protein inhibitor ID-3; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Homo sapiens}
Probab=20.38 E-value=33 Score=24.48 Aligned_cols=27 Identities=7% Similarity=0.127 Sum_probs=16.8
Q ss_pred CCccEEEEEecCCCCchhhHHHHHHHH
Q 027523 63 GYGSTVNINFCASCSYRGTAITMKRML 89 (222)
Q Consensus 63 ~~g~tV~i~YC~sCgY~~~f~~lk~~L 89 (222)
|..+-.+=+-+--+....+|++|++.|
T Consensus 14 ~~~~a~erER~Rm~~lN~aF~~LR~~V 40 (68)
T 2lfh_A 14 GKGPAAEEPLSLLDDMNHCYSRLRELV 40 (68)
T ss_dssp CCCCCBCCCSCSSSHHHHHHHHHHHHC
T ss_pred CCCCccHHHHHHHHHHHHHHHHHHHHC
Confidence 333433444555566788898888765
No 305
>3qii_A PHD finger protein 20; tudor domain, structural genomics, structural GE consortium, SGC, transcription regulator; 2.30A {Homo sapiens}
Probab=20.37 E-value=52 Score=24.41 Aligned_cols=17 Identities=12% Similarity=0.364 Sum_probs=13.6
Q ss_pred ccCCccEEEEEecCCCCc
Q 027523 61 GIGYGSTVNINFCASCSY 78 (222)
Q Consensus 61 ~~~~g~tV~i~YC~sCgY 78 (222)
....|.+|...+ .+|.|
T Consensus 21 ~f~vGd~VlArW-~D~~y 37 (85)
T 3qii_A 21 EFQINEQVLACW-SDCRF 37 (85)
T ss_dssp CCCTTCEEEEEC-TTSCE
T ss_pred ccccCCEEEEEe-CCCCE
Confidence 446788999998 99965
No 306
>2qyp_A Proactivator polypeptide; saposin, activator protein, alternative splicing, disease mutation, gaucher disease, glycoprotein, GM2- gangliosidosis; 2.45A {Homo sapiens} SCOP: a.64.1.1 PDB: 2z9a_A
Probab=20.17 E-value=22 Score=25.27 Aligned_cols=7 Identities=43% Similarity=0.805 Sum_probs=0.0
Q ss_pred CCCCCCC
Q 027523 33 KSASHHH 39 (222)
Q Consensus 33 ~~~~~~~ 39 (222)
++|||||
T Consensus 84 ~~~~~~~ 90 (91)
T 2qyp_A 84 TRHHHHH 90 (91)
T ss_dssp -------
T ss_pred ccccccc
Confidence 4444443
Done!