Query 027524
Match_columns 222
No_of_seqs 136 out of 1227
Neff 9.8
Searched_HMMs 46136
Date Fri Mar 29 11:12:52 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/027524.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/027524hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0406 Glutathione S-transfer 100.0 2.6E-40 5.7E-45 250.6 22.4 212 3-215 9-226 (231)
2 PRK09481 sspA stringent starva 100.0 6.9E-39 1.5E-43 247.6 20.8 192 4-202 11-204 (211)
3 PLN02473 glutathione S-transfe 100.0 7.1E-36 1.5E-40 231.3 17.6 192 2-199 1-210 (214)
4 PLN02395 glutathione S-transfe 100.0 1.3E-34 2.9E-39 224.3 18.7 192 1-200 1-210 (215)
5 PRK15113 glutathione S-transfe 100.0 1.1E-34 2.3E-39 224.7 17.4 190 1-202 1-210 (214)
6 PRK13972 GSH-dependent disulfi 100.0 9.3E-35 2E-39 225.2 17.1 185 4-200 2-205 (215)
7 PRK10542 glutathionine S-trans 100.0 9.9E-35 2.2E-39 222.8 16.2 187 4-200 1-197 (201)
8 PRK10357 putative glutathione 100.0 1.4E-33 3E-38 216.7 19.3 190 4-200 1-200 (202)
9 TIGR01262 maiA maleylacetoacet 100.0 9.8E-34 2.1E-38 218.7 17.8 188 5-201 1-205 (210)
10 TIGR00862 O-ClC intracellular 100.0 8.8E-33 1.9E-37 214.5 21.4 192 10-212 17-232 (236)
11 PRK11752 putative S-transferas 100.0 2.5E-33 5.4E-38 223.0 18.6 194 3-201 44-259 (264)
12 COG0625 Gst Glutathione S-tran 100.0 3.3E-33 7.1E-38 215.9 18.0 183 4-195 1-199 (211)
13 KOG0868 Glutathione S-transfer 100.0 1.3E-33 2.8E-38 202.0 13.1 190 3-201 5-208 (217)
14 PLN02378 glutathione S-transfe 100.0 2.3E-32 5E-37 211.4 17.6 185 9-205 17-204 (213)
15 PTZ00057 glutathione s-transfe 100.0 3.6E-32 7.9E-37 209.1 16.4 189 1-202 1-201 (205)
16 PLN02817 glutathione dehydroge 100.0 1.3E-31 2.9E-36 212.2 19.2 184 10-205 71-256 (265)
17 KOG0867 Glutathione S-transfer 100.0 8.7E-30 1.9E-34 198.0 17.6 191 3-199 2-208 (226)
18 PRK10387 glutaredoxin 2; Provi 100.0 2.7E-30 5.9E-35 199.5 13.9 176 4-194 1-207 (210)
19 KOG1695 Glutathione S-transfer 100.0 2.2E-28 4.7E-33 184.6 14.7 192 1-202 1-202 (206)
20 TIGR02182 GRXB Glutaredoxin, G 100.0 1E-27 2.2E-32 184.8 14.1 174 5-194 1-206 (209)
21 KOG4420 Uncharacterized conser 99.9 5.4E-24 1.2E-28 161.2 12.2 200 3-206 26-293 (325)
22 KOG1422 Intracellular Cl- chan 99.9 7.2E-23 1.6E-27 150.9 15.6 191 11-211 20-216 (221)
23 PLN02907 glutamate-tRNA ligase 99.9 3.1E-23 6.8E-28 183.0 15.8 158 1-193 1-159 (722)
24 PF13417 GST_N_3: Glutathione 99.8 1.1E-20 2.3E-25 122.0 8.6 74 6-80 1-74 (75)
25 cd03059 GST_N_SspA GST_N famil 99.8 1E-19 2.3E-24 116.8 8.8 73 4-77 1-73 (73)
26 cd03052 GST_N_GDAP1 GST_N fami 99.8 1.3E-19 2.9E-24 116.1 8.0 70 4-74 1-73 (73)
27 cd03061 GST_N_CLIC GST_N famil 99.8 2.4E-19 5.1E-24 118.4 8.6 70 10-80 20-89 (91)
28 cd03058 GST_N_Tau GST_N family 99.8 2.7E-19 5.8E-24 115.2 8.7 74 4-77 1-74 (74)
29 cd03041 GST_N_2GST_N GST_N fam 99.8 3.9E-19 8.5E-24 115.3 8.7 73 4-77 2-77 (77)
30 cd03076 GST_N_Pi GST_N family, 99.8 2E-19 4.4E-24 115.4 6.7 73 3-76 1-73 (73)
31 cd03045 GST_N_Delta_Epsilon GS 99.8 5.6E-19 1.2E-23 113.7 8.1 71 4-75 1-74 (74)
32 cd03060 GST_N_Omega_like GST_N 99.8 1E-18 2.3E-23 111.5 8.0 69 4-73 1-70 (71)
33 cd03050 GST_N_Theta GST_N fami 99.8 1.5E-18 3.2E-23 112.3 8.7 73 4-77 1-76 (76)
34 cd03053 GST_N_Phi GST_N family 99.8 1.5E-18 3.2E-23 112.3 8.7 72 4-76 2-76 (76)
35 KOG3029 Glutathione S-transfer 99.8 1.3E-17 2.9E-22 128.1 13.6 179 3-190 90-354 (370)
36 cd03048 GST_N_Ure2p_like GST_N 99.8 3.9E-18 8.5E-23 111.7 8.8 73 4-78 2-80 (81)
37 cd03056 GST_N_4 GST_N family, 99.8 3.4E-18 7.4E-23 109.6 8.0 70 4-74 1-73 (73)
38 cd03044 GST_N_EF1Bgamma GST_N 99.8 4.1E-18 8.9E-23 109.9 8.0 70 5-75 2-74 (75)
39 cd03039 GST_N_Sigma_like GST_N 99.8 2.3E-18 5E-23 110.2 6.4 71 4-75 1-72 (72)
40 cd03047 GST_N_2 GST_N family, 99.8 5.2E-18 1.1E-22 108.9 7.9 70 4-74 1-73 (73)
41 cd03049 GST_N_3 GST_N family, 99.7 5.4E-18 1.2E-22 108.8 7.6 70 4-74 1-73 (73)
42 cd03037 GST_N_GRX2 GST_N famil 99.7 9.9E-18 2.1E-22 107.0 8.0 70 4-75 1-71 (71)
43 cd03046 GST_N_GTT1_like GST_N 99.7 1.1E-17 2.3E-22 108.2 8.3 73 4-78 1-76 (76)
44 cd03051 GST_N_GTT2_like GST_N 99.7 1E-17 2.2E-22 107.7 7.3 70 4-74 1-74 (74)
45 cd03055 GST_N_Omega GST_N fami 99.7 1.5E-17 3.3E-22 110.8 8.1 71 3-74 18-89 (89)
46 cd03042 GST_N_Zeta GST_N famil 99.7 1.6E-17 3.6E-22 106.5 7.9 70 4-74 1-73 (73)
47 cd03057 GST_N_Beta GST_N famil 99.7 1.9E-17 4.1E-22 107.4 8.1 73 4-78 1-77 (77)
48 cd03077 GST_N_Alpha GST_N fami 99.7 3.8E-17 8.3E-22 106.3 8.6 72 3-78 1-77 (79)
49 PF02798 GST_N: Glutathione S- 99.7 4.4E-17 9.5E-22 105.3 8.2 72 4-75 1-76 (76)
50 cd03075 GST_N_Mu GST_N family, 99.7 3.9E-17 8.4E-22 107.0 7.7 72 5-77 2-82 (82)
51 cd03040 GST_N_mPGES2 GST_N fam 99.7 5.6E-17 1.2E-21 105.1 8.1 72 3-77 1-76 (77)
52 cd03185 GST_C_Tau GST_C family 99.7 2.3E-16 5.1E-21 111.9 11.9 121 88-209 2-124 (126)
53 PF13409 GST_N_2: Glutathione 99.7 4.4E-17 9.6E-22 103.5 7.1 65 11-76 1-70 (70)
54 cd03080 GST_N_Metaxin_like GST 99.7 9.1E-17 2E-21 103.6 8.1 67 4-78 2-75 (75)
55 cd03184 GST_C_Omega GST_C fami 99.7 6.8E-16 1.5E-20 109.3 9.7 120 89-210 2-123 (124)
56 cd03038 GST_N_etherase_LigE GS 99.7 2.7E-16 5.8E-21 103.7 7.0 67 10-78 14-84 (84)
57 COG0435 ECM4 Predicted glutath 99.7 3.2E-16 7E-21 120.3 7.9 195 4-201 52-287 (324)
58 cd03043 GST_N_1 GST_N family, 99.7 8.6E-16 1.9E-20 98.4 8.4 66 8-74 6-73 (73)
59 cd03190 GST_C_ECM4_like GST_C 99.7 1.3E-15 2.7E-20 110.4 10.1 124 89-213 4-131 (142)
60 COG2999 GrxB Glutaredoxin 2 [P 99.6 1.8E-15 4E-20 108.9 10.4 176 4-194 1-207 (215)
61 KOG4244 Failed axon connection 99.6 3E-15 6.6E-20 114.6 10.6 173 4-190 46-272 (281)
62 cd00570 GST_N_family Glutathio 99.6 1.7E-15 3.6E-20 95.8 7.7 70 4-74 1-71 (71)
63 cd03186 GST_C_SspA GST_N famil 99.6 4.8E-15 1E-19 102.1 9.8 103 88-197 2-106 (107)
64 cd03054 GST_N_Metaxin GST_N fa 99.6 3.8E-15 8.3E-20 95.2 7.6 65 4-76 1-72 (72)
65 cd03196 GST_C_5 GST_C family, 99.6 8.9E-15 1.9E-19 102.1 9.3 108 85-197 2-114 (115)
66 cd03188 GST_C_Beta GST_C famil 99.6 1.4E-14 3.1E-19 100.7 8.8 102 89-198 2-114 (114)
67 KOG2903 Predicted glutathione 99.6 6E-15 1.3E-19 112.4 6.9 193 4-199 38-287 (319)
68 cd03203 GST_C_Lambda GST_C fam 99.6 2.3E-14 5E-19 100.8 8.3 114 86-208 1-119 (120)
69 cd03209 GST_C_Mu GST_C family, 99.5 5.7E-14 1.2E-18 99.0 9.1 108 89-203 2-112 (121)
70 cd03198 GST_C_CLIC GST_C famil 99.5 1E-13 2.2E-18 98.4 9.8 101 104-207 12-131 (134)
71 cd03182 GST_C_GTT2_like GST_C 99.5 1.9E-13 4.1E-18 95.6 10.1 102 86-194 1-117 (117)
72 cd03201 GST_C_DHAR GST_C famil 99.5 1.9E-13 4.1E-18 96.2 9.5 100 104-206 15-116 (121)
73 cd03189 GST_C_GTT1_like GST_C 99.5 2.4E-13 5.2E-18 95.4 9.9 101 84-192 2-119 (119)
74 cd03187 GST_C_Phi GST_C family 99.5 2.1E-13 4.6E-18 95.4 8.7 104 89-198 2-118 (118)
75 cd03178 GST_C_Ure2p_like GST_C 99.5 1.3E-13 2.7E-18 95.9 7.3 103 89-198 1-112 (113)
76 cd03210 GST_C_Pi GST_C family, 99.5 3E-13 6.6E-18 95.9 8.7 107 89-202 3-114 (126)
77 cd03191 GST_C_Zeta GST_C famil 99.5 3.5E-13 7.6E-18 94.9 8.6 105 88-200 2-119 (121)
78 cd03208 GST_C_Alpha GST_C fami 99.4 4.7E-13 1E-17 96.3 8.7 107 89-202 3-117 (137)
79 cd03177 GST_C_Delta_Epsilon GS 99.4 2.2E-13 4.7E-18 95.5 6.6 103 89-198 2-110 (118)
80 cd03181 GST_C_EFB1gamma GST_C 99.4 3.7E-13 7.9E-18 95.0 7.5 109 89-202 1-118 (123)
81 cd03200 GST_C_JTV1 GST_C famil 99.4 5.1E-13 1.1E-17 90.1 7.3 95 70-190 1-95 (96)
82 cd03180 GST_C_2 GST_C family, 99.4 1.1E-12 2.5E-17 90.4 9.2 98 89-194 2-110 (110)
83 cd03079 GST_N_Metaxin2 GST_N f 99.4 1.6E-12 3.5E-17 82.5 6.9 60 10-76 15-74 (74)
84 PF00043 GST_C: Glutathione S- 99.4 2E-12 4.4E-17 86.9 7.1 73 114-192 23-95 (95)
85 cd03183 GST_C_Theta GST_C fami 99.4 3.5E-12 7.6E-17 90.4 7.9 102 90-198 2-120 (126)
86 KOG3027 Mitochondrial outer me 99.3 2.2E-11 4.7E-16 90.1 11.3 168 12-191 34-248 (257)
87 cd03206 GST_C_7 GST_C family, 99.3 6.2E-12 1.3E-16 85.5 7.2 71 116-194 30-100 (100)
88 cd03195 GST_C_4 GST_C family, 99.3 7.6E-12 1.6E-16 87.2 7.1 101 88-199 2-112 (114)
89 PF13410 GST_C_2: Glutathione 99.3 6.3E-12 1.4E-16 79.5 5.9 68 115-187 2-69 (69)
90 cd03207 GST_C_8 GST_C family, 99.3 6.9E-12 1.5E-16 85.7 6.1 75 116-199 27-101 (103)
91 cd03204 GST_C_GDAP1 GST_C fami 99.3 1.8E-11 4E-16 84.2 7.1 76 114-194 24-111 (111)
92 cd03179 GST_C_1 GST_C family, 99.3 2.5E-11 5.3E-16 83.0 7.8 93 89-189 2-105 (105)
93 PRK10638 glutaredoxin 3; Provi 99.3 4.2E-11 9.2E-16 78.5 8.4 73 1-74 1-74 (83)
94 TIGR02190 GlrX-dom Glutaredoxi 99.2 4.6E-11 9.9E-16 77.6 7.9 71 3-74 9-79 (79)
95 cd03192 GST_C_Sigma_like GST_C 99.2 6.8E-11 1.5E-15 80.8 7.2 94 89-188 2-104 (104)
96 PF14497 GST_C_3: Glutathione 99.1 4.6E-11 1E-15 81.0 3.8 95 86-190 2-99 (99)
97 cd03194 GST_C_3 GST_C family, 99.1 3.2E-10 6.9E-15 78.9 8.0 72 117-199 39-113 (114)
98 cd03029 GRX_hybridPRX5 Glutare 99.1 7.8E-10 1.7E-14 70.4 8.3 71 3-74 2-72 (72)
99 cd03078 GST_N_Metaxin1_like GS 99.1 7.7E-10 1.7E-14 70.5 7.6 59 10-76 14-72 (73)
100 cd00299 GST_C_family Glutathio 99.1 8.2E-10 1.8E-14 74.4 7.9 70 114-188 31-100 (100)
101 cd03202 GST_C_etherase_LigE GS 99.1 4.5E-10 9.9E-15 79.3 6.7 68 117-190 56-123 (124)
102 cd03193 GST_C_Metaxin GST_C fa 99.0 7E-10 1.5E-14 73.5 5.3 68 119-189 19-88 (88)
103 KOG3028 Translocase of outer m 99.0 3.2E-08 7E-13 78.2 13.8 167 12-190 17-233 (313)
104 cd03027 GRX_DEP Glutaredoxin ( 98.9 1.2E-08 2.6E-13 65.1 7.5 68 3-71 2-70 (73)
105 cd02976 NrdH NrdH-redoxin (Nrd 98.9 1.1E-08 2.3E-13 64.9 6.8 63 3-66 1-64 (73)
106 TIGR02196 GlrX_YruB Glutaredox 98.9 1.5E-08 3.2E-13 64.3 7.4 69 4-73 2-73 (74)
107 PF14834 GST_C_4: Glutathione 98.8 1.9E-08 4.2E-13 68.1 7.8 103 86-199 1-113 (117)
108 PRK10329 glutaredoxin-like pro 98.8 1.8E-08 4E-13 65.5 7.3 61 3-64 2-62 (81)
109 cd02066 GRX_family Glutaredoxi 98.8 3E-08 6.4E-13 62.5 7.8 69 3-72 1-70 (72)
110 cd03418 GRX_GRXb_1_3_like Glut 98.8 5.3E-08 1.2E-12 62.3 8.1 72 3-74 1-73 (75)
111 cd03211 GST_C_Metaxin2 GST_C f 98.8 7.4E-09 1.6E-13 73.3 4.2 72 116-189 54-126 (126)
112 cd03205 GST_C_6 GST_C family, 98.7 5.1E-08 1.1E-12 65.8 7.0 67 114-188 32-98 (98)
113 cd03197 GST_C_mPGES2 GST_C fam 98.7 4.2E-08 9E-13 70.5 6.0 64 122-190 82-145 (149)
114 TIGR02200 GlrX_actino Glutared 98.7 1.2E-07 2.6E-12 60.8 7.2 70 3-73 1-75 (77)
115 cd03212 GST_C_Metaxin1_3 GST_C 98.7 6.3E-08 1.4E-12 69.5 5.9 74 115-190 60-134 (137)
116 TIGR02181 GRX_bact Glutaredoxi 98.6 1.9E-07 4.2E-12 60.4 7.4 71 4-75 1-72 (79)
117 COG0695 GrxC Glutaredoxin and 98.6 4.3E-07 9.4E-12 58.8 7.8 70 3-73 2-74 (80)
118 PRK11200 grxA glutaredoxin 1; 98.6 5.4E-07 1.2E-11 59.2 8.5 77 2-78 1-84 (85)
119 TIGR02194 GlrX_NrdH Glutaredox 98.6 2.5E-07 5.4E-12 58.8 6.5 57 4-61 1-57 (72)
120 PF00462 Glutaredoxin: Glutare 98.5 2E-07 4.3E-12 57.0 5.3 59 4-63 1-60 (60)
121 cd03419 GRX_GRXh_1_2_like Glut 98.5 2E-06 4.3E-11 55.8 8.5 72 3-75 1-76 (82)
122 TIGR02189 GlrX-like_plant Glut 98.4 2.5E-06 5.4E-11 57.7 8.8 69 3-72 9-81 (99)
123 TIGR02183 GRXA Glutaredoxin, G 98.4 3E-06 6.6E-11 55.7 8.4 75 4-78 2-83 (86)
124 PHA03050 glutaredoxin; Provisi 98.4 4.7E-06 1E-10 57.2 8.7 68 3-71 14-88 (108)
125 TIGR00365 monothiol glutaredox 98.2 1.1E-05 2.5E-10 54.2 8.1 70 3-73 13-88 (97)
126 TIGR02180 GRX_euk Glutaredoxin 98.2 1.5E-05 3.3E-10 51.8 8.2 71 4-75 1-77 (84)
127 cd03028 GRX_PICOT_like Glutare 98.2 1.6E-05 3.5E-10 52.7 8.0 70 3-73 9-84 (90)
128 PF10568 Tom37: Outer mitochon 98.1 1.8E-05 4E-10 50.0 6.8 55 11-73 13-71 (72)
129 PRK12759 bifunctional gluaredo 97.9 6.5E-05 1.4E-09 63.7 8.5 70 1-71 1-79 (410)
130 cd03031 GRX_GRX_like Glutaredo 97.7 0.00031 6.6E-09 50.8 8.2 69 4-72 2-80 (147)
131 PRK10824 glutaredoxin-4; Provi 97.7 0.00032 6.9E-09 48.5 7.6 70 3-73 16-91 (115)
132 KOG1752 Glutaredoxin and relat 97.4 0.0014 2.9E-08 44.5 7.6 71 3-74 15-89 (104)
133 cd02973 TRX_GRX_like Thioredox 97.2 0.002 4.4E-08 39.8 6.5 58 3-64 2-64 (67)
134 COG4545 Glutaredoxin-related p 97.1 0.002 4.4E-08 40.2 5.6 63 1-64 1-77 (85)
135 PTZ00062 glutaredoxin; Provisi 97.1 0.0034 7.4E-08 48.0 7.9 69 3-72 114-188 (204)
136 cd03199 GST_C_GRX2 GST_C famil 97.1 0.00097 2.1E-08 46.8 4.5 69 116-194 57-125 (128)
137 cd03036 ArsC_like Arsenate Red 96.9 0.0021 4.6E-08 44.3 4.9 34 4-37 1-34 (111)
138 KOG1147 Glutamyl-tRNA syntheta 96.9 0.00087 1.9E-08 57.3 3.3 115 58-194 43-158 (712)
139 PF04399 Glutaredoxin2_C: Glut 96.8 0.0025 5.4E-08 45.2 4.8 70 115-194 55-124 (132)
140 cd02977 ArsC_family Arsenate R 96.8 0.0034 7.5E-08 42.7 5.1 33 4-36 1-33 (105)
141 PRK01655 spxA transcriptional 96.8 0.0034 7.5E-08 44.6 5.2 33 4-36 2-34 (131)
142 TIGR00412 redox_disulf_2 small 96.7 0.012 2.6E-07 37.4 7.0 57 1-64 1-61 (76)
143 cd03032 ArsC_Spx Arsenate Redu 96.7 0.0048 1E-07 42.8 5.5 33 4-36 2-34 (115)
144 PRK10026 arsenate reductase; P 96.6 0.0034 7.4E-08 45.0 4.2 34 1-34 1-34 (141)
145 PRK13344 spxA transcriptional 96.5 0.0084 1.8E-07 42.7 5.6 34 4-37 2-35 (132)
146 PRK12559 transcriptional regul 96.4 0.0087 1.9E-07 42.5 5.3 34 4-37 2-35 (131)
147 TIGR01617 arsC_related transcr 96.3 0.0089 1.9E-07 41.5 4.9 33 4-36 1-33 (117)
148 PF05768 DUF836: Glutaredoxin- 96.1 0.031 6.6E-07 36.1 6.2 55 3-60 1-57 (81)
149 cd03035 ArsC_Yffb Arsenate Red 96.1 0.016 3.4E-07 39.5 5.0 32 4-35 1-32 (105)
150 cd03033 ArsC_15kD Arsenate Red 96.0 0.012 2.6E-07 40.7 4.0 33 3-35 1-33 (113)
151 PF11287 DUF3088: Protein of u 95.7 0.047 1E-06 37.1 5.9 68 11-78 23-108 (112)
152 cd03030 GRX_SH3BGR Glutaredoxi 95.6 0.11 2.5E-06 34.3 7.4 67 4-71 2-79 (92)
153 TIGR00411 redox_disulf_1 small 95.5 0.087 1.9E-06 33.5 6.5 56 4-61 3-62 (82)
154 COG1393 ArsC Arsenate reductas 95.4 0.053 1.2E-06 37.6 5.4 32 4-35 3-34 (117)
155 TIGR01616 nitro_assoc nitrogen 95.2 0.033 7.1E-07 39.3 4.1 33 3-35 2-34 (126)
156 PHA02125 thioredoxin-like prot 95.2 0.083 1.8E-06 33.4 5.6 53 4-61 2-54 (75)
157 PRK10853 putative reductase; P 95.2 0.035 7.6E-07 38.6 4.1 32 4-35 2-33 (118)
158 cd01659 TRX_superfamily Thiore 94.9 0.097 2.1E-06 30.6 5.1 54 4-58 1-59 (69)
159 cd03026 AhpF_NTD_C TRX-GRX-lik 94.9 0.15 3.3E-06 33.5 6.3 58 3-64 15-77 (89)
160 COG0278 Glutaredoxin-related p 94.8 0.16 3.4E-06 33.9 6.0 66 8-74 26-93 (105)
161 PF13192 Thioredoxin_3: Thiore 94.2 0.44 9.6E-06 30.1 7.2 57 4-66 3-63 (76)
162 cd03034 ArsC_ArsC Arsenate Red 93.9 0.093 2E-06 36.1 3.9 31 4-34 1-31 (112)
163 TIGR00014 arsC arsenate reduct 93.7 0.11 2.3E-06 36.0 3.9 32 4-35 1-32 (114)
164 PF04908 SH3BGR: SH3-binding, 92.4 0.71 1.5E-05 31.0 6.1 68 1-69 1-83 (99)
165 KOG0911 Glutaredoxin-related p 91.2 0.76 1.6E-05 35.4 5.8 66 8-74 150-216 (227)
166 PF03960 ArsC: ArsC family; I 85.9 1.1 2.4E-05 30.5 3.4 29 7-35 1-29 (110)
167 TIGR01295 PedC_BrcD bacterioci 85.8 6.1 0.00013 27.5 7.1 59 4-63 27-103 (122)
168 PF11801 Tom37_C: Tom37 C-term 85.4 2.1 4.6E-05 31.7 4.9 38 123-161 112-153 (168)
169 COG3019 Predicted metal-bindin 85.2 4.1 8.9E-05 29.0 5.8 75 3-77 27-104 (149)
170 PF00085 Thioredoxin: Thioredo 81.2 12 0.00027 24.2 8.5 69 4-75 21-102 (103)
171 TIGR02187 GlrX_arch Glutaredox 77.2 13 0.00029 28.5 7.0 54 4-59 137-193 (215)
172 PRK15317 alkyl hydroperoxide r 77.2 2.5 5.5E-05 37.2 3.2 72 3-76 119-197 (517)
173 PF09635 MetRS-N: MetRS-N bind 76.7 2 4.4E-05 29.8 2.0 27 52-78 35-63 (122)
174 TIGR03143 AhpF_homolog putativ 76.3 8.7 0.00019 34.2 6.4 58 3-64 479-541 (555)
175 TIGR03140 AhpF alkyl hydropero 75.8 2.5 5.4E-05 37.3 2.8 72 3-76 120-198 (515)
176 cd02984 TRX_PICOT TRX domain, 75.2 13 0.00029 24.0 5.7 58 4-63 18-81 (97)
177 cd02989 Phd_like_TxnDC9 Phosdu 74.9 13 0.00027 25.4 5.7 61 4-66 26-91 (113)
178 cd02975 PfPDO_like_N Pyrococcu 72.4 11 0.00025 25.6 5.0 53 4-58 25-81 (113)
179 PHA02278 thioredoxin-like prot 72.2 27 0.00058 23.5 6.9 58 5-63 19-85 (103)
180 cd02949 TRX_NTR TRX domain, no 72.0 24 0.00053 22.9 6.6 58 4-63 17-80 (97)
181 cd02953 DsbDgamma DsbD gamma f 69.5 22 0.00048 23.4 5.8 52 4-57 15-77 (104)
182 cd02963 TRX_DnaJ TRX domain, D 69.0 31 0.00068 23.2 6.6 57 4-62 28-91 (111)
183 cd02951 SoxW SoxW family; SoxW 68.0 29 0.00064 23.7 6.4 16 4-19 18-33 (125)
184 PHA03075 glutaredoxin-like pro 65.9 11 0.00023 26.1 3.5 68 1-77 1-70 (123)
185 PTZ00051 thioredoxin; Provisio 65.1 34 0.00075 22.0 6.4 58 4-63 22-84 (98)
186 PRK09381 trxA thioredoxin; Pro 63.3 41 0.00089 22.3 6.8 58 4-63 25-88 (109)
187 cd02947 TRX_family TRX family; 63.3 33 0.00072 21.2 6.8 54 4-61 14-74 (93)
188 TIGR02187 GlrX_arch Glutaredox 62.9 41 0.00089 25.8 6.9 58 3-62 22-89 (215)
189 cd02959 ERp19 Endoplasmic reti 60.5 49 0.0011 22.6 6.3 61 4-65 23-92 (117)
190 KOG1668 Elongation factor 1 be 59.8 3.4 7.4E-05 32.1 0.3 59 125-195 10-68 (231)
191 cd02957 Phd_like Phosducin (Ph 58.9 32 0.00068 23.2 5.1 64 5-71 29-97 (113)
192 cd03003 PDI_a_ERdj5_N PDIa fam 57.5 51 0.0011 21.5 6.2 56 4-61 22-83 (101)
193 cd02948 TRX_NDPK TRX domain, T 57.2 53 0.0012 21.6 7.8 57 4-63 21-84 (102)
194 TIGR02681 phage_pRha phage reg 54.2 14 0.0003 25.2 2.5 26 53-78 2-28 (108)
195 KOG2824 Glutaredoxin-related p 53.7 32 0.0007 27.6 4.8 57 14-71 149-210 (281)
196 PRK10996 thioredoxin 2; Provis 53.5 77 0.0017 22.4 7.3 58 4-63 56-119 (139)
197 cd02962 TMX2 TMX2 family; comp 52.8 85 0.0018 22.8 6.7 62 4-65 51-123 (152)
198 cd02993 PDI_a_APS_reductase PD 51.5 70 0.0015 21.3 6.0 53 4-57 25-83 (109)
199 PF01323 DSBA: DSBA-like thior 51.0 30 0.00066 25.6 4.3 36 3-38 1-41 (193)
200 PF10022 DUF2264: Uncharacteri 50.2 21 0.00047 30.0 3.5 108 53-163 98-215 (361)
201 PRK13947 shikimate kinase; Pro 49.7 25 0.00055 25.5 3.6 31 1-31 1-31 (171)
202 cd02987 Phd_like_Phd Phosducin 48.9 1.1E+02 0.0023 22.7 6.9 61 6-69 89-154 (175)
203 cd02996 PDI_a_ERp44 PDIa famil 48.4 69 0.0015 21.1 5.4 56 4-61 22-89 (108)
204 cd02954 DIM1 Dim1 family; Dim1 48.1 59 0.0013 22.4 4.9 56 6-63 20-81 (114)
205 TIGR01068 thioredoxin thioredo 46.9 74 0.0016 20.2 8.2 56 4-61 18-79 (101)
206 PRK13949 shikimate kinase; Pro 46.6 30 0.00065 25.5 3.6 31 1-31 1-31 (169)
207 PF14595 Thioredoxin_9: Thiore 45.5 15 0.00032 25.9 1.7 53 4-58 45-103 (129)
208 cd02997 PDI_a_PDIR PDIa family 43.5 88 0.0019 20.1 6.6 57 4-61 21-86 (104)
209 cd02956 ybbN ybbN protein fami 43.2 87 0.0019 20.0 7.0 57 4-62 16-78 (96)
210 cd02985 TRX_CDSP32 TRX family, 43.0 96 0.0021 20.4 7.0 58 5-63 20-84 (103)
211 KOG0190 Protein disulfide isom 42.8 1.1E+02 0.0023 27.1 6.6 73 4-78 46-133 (493)
212 cd02994 PDI_a_TMX PDIa family, 42.0 95 0.002 20.1 5.9 53 4-58 20-77 (101)
213 PF04134 DUF393: Protein of un 42.0 1E+02 0.0022 20.7 5.4 70 6-76 1-77 (114)
214 KOG3425 Uncharacterized conser 41.3 86 0.0019 21.9 4.7 68 9-76 42-122 (128)
215 cd03006 PDI_a_EFP1_N PDIa fami 41.2 60 0.0013 22.2 4.1 52 4-57 33-89 (113)
216 cd02955 SSP411 TRX domain, SSP 40.7 1.2E+02 0.0027 21.0 6.9 60 6-66 21-97 (124)
217 PF06110 DUF953: Eukaryotic pr 39.9 33 0.00071 23.9 2.6 59 8-67 34-106 (119)
218 PF13728 TraF: F plasmid trans 39.6 1.3E+02 0.0029 23.1 6.3 52 4-57 124-188 (215)
219 cd02950 TxlA TRX-like protein 38.9 1.4E+02 0.003 21.1 6.8 59 4-63 24-90 (142)
220 cd03004 PDI_a_ERdj5_C PDIa fam 37.4 89 0.0019 20.3 4.5 52 4-57 23-78 (104)
221 PF13098 Thioredoxin_2: Thiore 36.0 29 0.00063 23.0 1.9 34 4-37 9-49 (112)
222 TIGR01764 excise DNA binding d 35.7 61 0.0013 17.5 3.0 25 51-75 25-49 (49)
223 PRK09266 hypothetical protein; 35.1 79 0.0017 25.1 4.6 58 21-78 200-259 (266)
224 PTZ00102 disulphide isomerase; 35.0 2.8E+02 0.006 23.9 8.3 73 4-78 53-139 (477)
225 cd03005 PDI_a_ERp46 PDIa famil 34.7 1.2E+02 0.0027 19.3 6.0 56 4-61 20-84 (102)
226 cd03000 PDI_a_TMX3 PDIa family 34.3 1.3E+02 0.0029 19.6 6.0 52 4-57 19-77 (104)
227 PF04564 U-box: U-box domain; 34.2 1.2E+02 0.0025 18.8 4.7 25 52-77 15-39 (73)
228 PRK10877 protein disulfide iso 33.8 71 0.0015 25.0 4.0 22 4-25 111-132 (232)
229 cd03020 DsbA_DsbC_DsbG DsbA fa 33.3 63 0.0014 24.3 3.6 22 3-24 80-101 (197)
230 cd02952 TRP14_like Human TRX-r 33.3 1.6E+02 0.0036 20.3 6.2 55 10-65 38-105 (119)
231 cd02999 PDI_a_ERp44_like PDIa 32.8 1.1E+02 0.0023 20.2 4.3 53 4-57 22-77 (100)
232 KOG0912 Thiol-disulfide isomer 32.4 47 0.001 27.3 2.8 69 7-77 20-106 (375)
233 cd02972 DsbA_family DsbA famil 32.3 66 0.0014 20.1 3.2 22 4-25 1-22 (98)
234 TIGR01126 pdi_dom protein disu 32.1 63 0.0014 20.7 3.1 52 4-57 17-74 (102)
235 PF09413 DUF2007: Domain of un 31.8 54 0.0012 19.7 2.5 33 4-36 1-33 (67)
236 COG4289 Uncharacterized protei 31.6 1.6E+02 0.0034 25.0 5.6 101 59-161 117-226 (458)
237 cd02965 HyaE HyaE family; HyaE 31.1 1.3E+02 0.0029 20.6 4.5 60 4-65 31-98 (111)
238 TIGR01130 ER_PDI_fam protein d 31.0 3.2E+02 0.007 23.2 8.0 73 4-78 22-110 (462)
239 KOG2501 Thioredoxin, nucleored 30.8 1.8E+02 0.0038 21.4 5.3 34 5-38 37-78 (157)
240 COG3011 Predicted thiol-disulf 30.1 2.1E+02 0.0045 20.5 6.9 75 3-77 9-87 (137)
241 PF12728 HTH_17: Helix-turn-he 30.1 91 0.002 17.4 3.1 26 51-76 25-50 (51)
242 PTZ00443 Thioredoxin domain-co 29.6 2.7E+02 0.0059 21.7 8.6 72 4-77 56-139 (224)
243 COG3118 Thioredoxin domain-con 29.4 2.7E+02 0.0059 22.8 6.6 73 4-78 47-131 (304)
244 cd03002 PDI_a_MPD1_like PDI fa 29.3 1.7E+02 0.0036 19.1 6.0 53 4-57 22-79 (109)
245 COG2761 FrnE Predicted dithiol 29.1 28 0.0006 27.2 1.0 22 3-24 7-28 (225)
246 cd02970 PRX_like2 Peroxiredoxi 28.7 1.4E+02 0.0031 20.6 4.7 51 9-61 33-90 (149)
247 cd04911 ACT_AKiii-YclM-BS_1 AC 28.6 81 0.0018 20.0 2.9 25 11-35 14-38 (76)
248 PRK06217 hypothetical protein; 28.0 85 0.0018 23.2 3.5 29 1-29 1-29 (183)
249 cd03021 DsbA_GSTK DsbA family, 27.9 92 0.002 23.6 3.7 34 3-36 2-39 (209)
250 PF07728 AAA_5: AAA domain (dy 27.8 2.1E+02 0.0045 19.7 5.3 41 3-43 1-41 (139)
251 PRK11657 dsbG disulfide isomer 27.8 92 0.002 24.7 3.8 20 4-23 121-140 (251)
252 PRK08118 topology modulation p 27.0 94 0.002 22.7 3.5 31 1-31 1-31 (167)
253 cd02998 PDI_a_ERp38 PDIa famil 26.4 1.8E+02 0.0039 18.5 5.1 53 4-57 22-80 (105)
254 PRK03731 aroL shikimate kinase 26.0 1.1E+02 0.0023 22.2 3.6 30 2-31 3-32 (171)
255 PLN02309 5'-adenylylsulfate re 25.4 2.4E+02 0.0053 24.7 6.1 54 4-58 369-428 (457)
256 cd03025 DsbA_FrnE_like DsbA fa 25.0 1.3E+02 0.0029 22.1 4.1 33 3-35 2-40 (193)
257 PF00731 AIRC: AIR carboxylase 24.8 1.5E+02 0.0032 21.6 4.1 34 10-43 11-44 (150)
258 COG3150 Predicted esterase [Ge 24.6 92 0.002 23.3 2.9 33 4-36 3-35 (191)
259 cd02961 PDI_a_family Protein D 24.4 1.9E+02 0.004 18.0 6.0 52 4-57 19-76 (101)
260 PF09868 DUF2095: Uncharacteri 24.0 50 0.0011 22.8 1.4 62 16-77 26-91 (128)
261 COG0703 AroK Shikimate kinase 24.0 1.1E+02 0.0025 22.8 3.4 30 3-32 4-33 (172)
262 COG5515 Uncharacterized conser 23.9 79 0.0017 19.1 2.0 21 4-24 3-27 (70)
263 PRK00625 shikimate kinase; Pro 23.8 1.2E+02 0.0026 22.5 3.5 31 1-32 1-31 (173)
264 PF05496 RuvB_N: Holliday junc 23.4 2.5E+02 0.0054 22.1 5.3 33 3-35 52-84 (233)
265 COG5494 Predicted thioredoxin/ 23.3 2.5E+02 0.0055 21.8 5.1 70 4-75 13-86 (265)
266 cd03024 DsbA_FrnE DsbA family, 22.5 1E+02 0.0022 22.9 3.1 32 4-35 1-40 (201)
267 cd02995 PDI_a_PDI_a'_C PDIa fa 22.4 2.2E+02 0.0047 18.1 5.2 51 4-57 22-78 (104)
268 TIGR01162 purE phosphoribosyla 22.0 1.9E+02 0.0042 21.2 4.1 28 10-37 9-36 (156)
269 COG1102 Cmk Cytidylate kinase 21.9 1.2E+02 0.0026 22.6 3.1 28 4-31 3-30 (179)
270 PRK14531 adenylate kinase; Pro 21.8 1.4E+02 0.003 22.1 3.6 29 1-29 1-30 (183)
271 KOG0907 Thioredoxin [Posttrans 21.7 2.5E+02 0.0054 18.9 4.5 57 7-65 28-89 (106)
272 PRK14528 adenylate kinase; Pro 21.6 1.4E+02 0.003 22.2 3.6 29 1-29 1-29 (186)
273 COG0429 Predicted hydrolase of 21.3 2.3E+02 0.0049 23.7 4.9 69 5-83 80-151 (345)
274 cd03001 PDI_a_P5 PDIa family, 21.2 2.3E+02 0.0051 18.0 5.7 52 4-57 22-77 (103)
275 cd03022 DsbA_HCCA_Iso DsbA fam 21.0 1.4E+02 0.0031 21.9 3.5 32 4-35 1-36 (192)
276 PF15608 PELOTA_1: PELOTA RNA 21.0 2.1E+02 0.0045 19.3 3.8 29 5-33 59-87 (100)
277 PF00004 AAA: ATPase family as 20.7 2.2E+02 0.0048 19.0 4.3 30 4-33 1-30 (132)
278 cd03017 PRX_BCP Peroxiredoxin 20.2 1.7E+02 0.0036 20.1 3.6 49 10-60 34-89 (140)
No 1
>KOG0406 consensus Glutathione S-transferase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=2.6e-40 Score=250.59 Aligned_cols=212 Identities=46% Similarity=0.778 Sum_probs=187.9
Q ss_pred ceEEecccCChhhhHHHHHHHhhCCCeeEEEcCCCCChhHHHhhCCCCCcccEEEeCCeeeehhHHHHHHHHhhCC-CCC
Q 027524 3 EVKLHGGLLSPFNYRVVCALKLKGIPFELIKEDLSNKSALLLKYNPVHKKIPVLVHGGKPVCESMVILEYIEETWP-QNP 81 (222)
Q Consensus 3 ~~~L~~~~~s~~~~~v~~~l~~~gi~~~~~~v~~~~~~~~~~~~~p~~g~vP~L~~~g~~l~es~aI~~yL~~~~~-~~~ 81 (222)
+++||+++.|||++|++++|..+||+|+.+.+|+.+++++++..||.+++||+|+++|.+|.||..|++||++.++ +++
T Consensus 9 ~vrL~~~w~sPfa~R~~iaL~~KgI~yE~veedl~~Ks~~ll~~np~hkKVPvL~Hn~k~i~ESliiveYiDe~w~~~~~ 88 (231)
T KOG0406|consen 9 TVKLLGMWFSPFAQRVRIALKLKGIPYEYVEEDLTNKSEWLLEKNPVHKKVPVLEHNGKPICESLIIVEYIDETWPSGPP 88 (231)
T ss_pred eEEEEEeecChHHHHHHHHHHhcCCceEEEecCCCCCCHHHHHhccccccCCEEEECCceehhhHHHHHHHHhhccCCCC
Confidence 3899999999999999999999999999999999999999999997779999999999999999999999999999 589
Q ss_pred CCCCCHHHHHHHHHHHHHHhhh-cchhhhh-h-cCHHHHHHHHHHHHHHHHHHHhcccC-CCCccccCCCChhHHHHHHH
Q 027524 82 LMPSDPYDRAQARFWINFAENK-GAAVWKL-F-RSIEDQENTMKEILEMLQIVEEHGLG-EKKFFHGDKIGLVDIAFGSI 157 (222)
Q Consensus 82 l~p~~~~~~a~~~~~~~~~~~~-~~~~~~~-~-~~~~~~~~~~~~~~~~l~~l~e~~L~-~~~~l~G~~~s~AD~~l~~~ 157 (222)
++|.||.+|++++.|++++++. +.....+ . ..++.++.+.+.+.+.|..| |+.|. +.+|+.|+++++.|+++++.
T Consensus 89 iLP~DPy~Ra~arfwa~~id~~~~~~~~~~~~~~~~e~~~~~~~e~~e~l~~l-E~el~k~k~~fgG~~~G~vDi~~~p~ 167 (231)
T KOG0406|consen 89 ILPSDPYERAQARFWAEYIDKKVFFVGRFVVAAKGGEEQEAAKEELREALKVL-EEELGKGKDFFGGETIGFVDIAIGPS 167 (231)
T ss_pred CCCCCHHHHHHHHHHHHHHHhHHHHHHHHHHhhcCchHHHHHHHHHHHHHHHH-HHHHhcCCCCCCCCCcCHhhhhHHhh
Confidence 9999999999999999999987 3333322 2 44578888999999999999 77776 88999999999999999977
Q ss_pred HHHHHHHHHh-hcccccCCCCCchHHHHHHHhcccchhhccCCChHHHHHHHHHHHHHH
Q 027524 158 VHWLQIIEDI-VGVKLFESHKFPGLHAWLKNYKQVPVVEENLPSRDELLVFFKGRYEKL 215 (222)
Q Consensus 158 l~~~~~~~~~-~~~~~~~~~~~p~l~~w~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~ 215 (222)
+.+....... .|.+....+.+|+|.+|.++|.++|++++++++.+...++++++++..
T Consensus 168 ~~~~~~~~~~~~~~~~~~~~~~P~L~~W~~~~~~~~~V~~~~p~~e~~~e~~~~~~~~~ 226 (231)
T KOG0406|consen 168 FERWLAVLEKFGGVKFIIEEETPKLIKWIKRMKEDEAVKAVLPDSEKVVEFMKKYRQGS 226 (231)
T ss_pred HHHHHHHHHHhcCcccCCCCCCccHHHHHHHHhcChhHHhhcCCHHHHHHHHHHHHHhc
Confidence 7777555444 334556678999999999999999999999999999999999998864
No 2
>PRK09481 sspA stringent starvation protein A; Provisional
Probab=100.00 E-value=6.9e-39 Score=247.60 Aligned_cols=192 Identities=24% Similarity=0.413 Sum_probs=165.0
Q ss_pred eEEecccCChhhhHHHHHHHhhCCCeeEEEcCCCCChhHHHhhCCCCCcccEEEeCCeeeehhHHHHHHHHhhCCCCCCC
Q 027524 4 VKLHGGLLSPFNYRVVCALKLKGIPFELIKEDLSNKSALLLKYNPVHKKIPVLVHGGKPVCESMVILEYIEETWPQNPLM 83 (222)
Q Consensus 4 ~~L~~~~~s~~~~~v~~~l~~~gi~~~~~~v~~~~~~~~~~~~~p~~g~vP~L~~~g~~l~es~aI~~yL~~~~~~~~l~ 83 (222)
|+||+++.||+|++++++|+++|++|+.+.++..+++++|+++||. |+||+|+++|.+|+||.||++||++++|...|+
T Consensus 11 ~~Ly~~~~s~~~~rv~~~L~e~gl~~e~~~v~~~~~~~~~~~~nP~-g~VPvL~~~g~~l~ES~AIl~YL~~~~~~~~l~ 89 (211)
T PRK09481 11 MTLFSGPTDIYSHQVRIVLAEKGVSVEIEQVEKDNLPQDLIDLNPY-QSVPTLVDRELTLYESRIIMEYLDERFPHPPLM 89 (211)
T ss_pred eEEeCCCCChhHHHHHHHHHHCCCCCEEEeCCcccCCHHHHHhCCC-CCCCEEEECCEEeeCHHHHHHHHHHhCCCCCCC
Confidence 8999999999999999999999999999999988888999999999 999999999999999999999999999987899
Q ss_pred CCCHHHHHHHHHHHHHHhhhcchh-hhhh-cCHHHHHHHHHHHHHHHHHHHhcccCCCCccccCCCChhHHHHHHHHHHH
Q 027524 84 PSDPYDRAQARFWINFAENKGAAV-WKLF-RSIEDQENTMKEILEMLQIVEEHGLGEKKFFHGDKIGLVDIAFGSIVHWL 161 (222)
Q Consensus 84 p~~~~~~a~~~~~~~~~~~~~~~~-~~~~-~~~~~~~~~~~~~~~~l~~l~e~~L~~~~~l~G~~~s~AD~~l~~~l~~~ 161 (222)
|.++.+|++++.|+.++...+..+ ..+. ..+...+.....+.+.+..+ |+.|++++|++|+++|+||+++++.+.++
T Consensus 90 p~~~~~ra~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~l-e~~L~~~~~l~G~~~t~AD~~l~~~~~~~ 168 (211)
T PRK09481 90 PVYPVARGESRLMMHRIEKDWYSLMNKIVNGSASEADAARKQLREELLAI-APVFGEKPYFMSEEFSLVDCYLAPLLWRL 168 (211)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHH-HHHhccCCcccCCCccHHHHHHHHHHHHH
Confidence 999999999999998876542222 2222 22445566778899999999 99999899999999999999999998777
Q ss_pred HHHHHhhcccccCCCCCchHHHHHHHhcccchhhccCCChH
Q 027524 162 QIIEDIVGVKLFESHKFPGLHAWLKNYKQVPVVEENLPSRD 202 (222)
Q Consensus 162 ~~~~~~~~~~~~~~~~~p~l~~w~~~~~~~p~~~~~~~~~~ 202 (222)
... +.++. ...+|+|++|++++.++|++++++...+
T Consensus 169 ~~~----~~~~~-~~~~p~l~~w~~~~~~rp~~~~~~~~~~ 204 (211)
T PRK09481 169 PVL----GIELS-GPGAKELKGYMTRVFERDSFLASLTEAE 204 (211)
T ss_pred Hhc----CCCCC-CCCChhHHHHHHHHhccHHHHHHcCHHH
Confidence 432 44432 2479999999999999999999987543
No 3
>PLN02473 glutathione S-transferase
Probab=100.00 E-value=7.1e-36 Score=231.32 Aligned_cols=192 Identities=22% Similarity=0.335 Sum_probs=158.1
Q ss_pred cceEEecccCChhhhHHHHHHHhhCCCeeEEEcCCC---CChhHHHhhCCCCCcccEEEeCCeeeehhHHHHHHHHhhCC
Q 027524 2 AEVKLHGGLLSPFNYRVVCALKLKGIPFELIKEDLS---NKSALLLKYNPVHKKIPVLVHGGKPVCESMVILEYIEETWP 78 (222)
Q Consensus 2 ~~~~L~~~~~s~~~~~v~~~l~~~gi~~~~~~v~~~---~~~~~~~~~~p~~g~vP~L~~~g~~l~es~aI~~yL~~~~~ 78 (222)
-.|+||+++.|+++++|+++|+++||+|+.+.++.. ..+++++.+||. |+||+|+++|.+|+||.||++||+++++
T Consensus 1 ~~~kLy~~~~s~~~~rv~~~L~e~gi~ye~~~v~~~~~~~~~~~~~~~nP~-g~vP~L~~~g~~l~ES~aI~~YL~~~~~ 79 (214)
T PLN02473 1 MVVKVYGQIKAANPQRVLLCFLEKGIEFEVIHVDLDKLEQKKPEHLLRQPF-GQVPAIEDGDLKLFESRAIARYYATKYA 79 (214)
T ss_pred CceEEecCCCCCchHHHHHHHHHcCCCceEEEecCcccccCCHHHHhhCCC-CCCCeEEECCEEEEehHHHHHHHHHHcC
Confidence 038999999999999999999999999999998875 578889999999 9999999999999999999999999997
Q ss_pred CC--CCCCCCHHHHHHHHHHHHHHhhhcchh-----h-hhhc-------CHHHHHHHHHHHHHHHHHHHhcccCCCCccc
Q 027524 79 QN--PLMPSDPYDRAQARFWINFAENKGAAV-----W-KLFR-------SIEDQENTMKEILEMLQIVEEHGLGEKKFFH 143 (222)
Q Consensus 79 ~~--~l~p~~~~~~a~~~~~~~~~~~~~~~~-----~-~~~~-------~~~~~~~~~~~~~~~l~~l~e~~L~~~~~l~ 143 (222)
.. +|+|.++.+++++++|+.++++.+... . .++. +.+..+.....+.+.++.| |+.|++++|++
T Consensus 80 ~~~~~l~p~~~~~ra~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l-e~~L~~~~~l~ 158 (214)
T PLN02473 80 DQGTDLLGKTLEHRAIVDQWVEVENNYFYAVALPLVINLVFKPRLGEPCDVALVEELKVKFDKVLDVY-ENRLATNRYLG 158 (214)
T ss_pred CcCCCCCCCCHHHHHHHHHHHHHHHhcccHHHHHHHHHHHhcccccCCCChHHHHHHHHHHHHHHHHH-HHHhccCCccc
Confidence 43 589999999999999998887653211 1 1111 1233455678889999999 99999889999
Q ss_pred cCCCChhHHHHHHHHHHHHHHHHhhcccccCCCCCchHHHHHHHhcccchhhccCC
Q 027524 144 GDKIGLVDIAFGSIVHWLQIIEDIVGVKLFESHKFPGLHAWLKNYKQVPVVEENLP 199 (222)
Q Consensus 144 G~~~s~AD~~l~~~l~~~~~~~~~~~~~~~~~~~~p~l~~w~~~~~~~p~~~~~~~ 199 (222)
|+++|+||+++++.+.+....... ... .+++|+|.+|++++.++|++++++.
T Consensus 159 Gd~~t~ADi~~~~~~~~~~~~~~~--~~~--~~~~P~l~~w~~~~~~~p~~~~~~~ 210 (214)
T PLN02473 159 GDEFTLADLTHMPGMRYIMNETSL--SGL--VTSRENLNRWWNEISARPAWKKLME 210 (214)
T ss_pred CCCCCHHHHHHHHHHHHHHhcccc--HHH--HhcCHHHHHHHHHHhcChhhHHHHH
Confidence 999999999999988876422111 112 3589999999999999999998764
No 4
>PLN02395 glutathione S-transferase
Probab=100.00 E-value=1.3e-34 Score=224.32 Aligned_cols=192 Identities=23% Similarity=0.367 Sum_probs=155.9
Q ss_pred CcceEEecccCChhhhHHHHHHHhhCCCeeEEEcCCC---CChhHHHhhCCCCCcccEEEeCCeeeehhHHHHHHHHhhC
Q 027524 1 MAEVKLHGGLLSPFNYRVVCALKLKGIPFELIKEDLS---NKSALLLKYNPVHKKIPVLVHGGKPVCESMVILEYIEETW 77 (222)
Q Consensus 1 M~~~~L~~~~~s~~~~~v~~~l~~~gi~~~~~~v~~~---~~~~~~~~~~p~~g~vP~L~~~g~~l~es~aI~~yL~~~~ 77 (222)
|+ ++||+.+.| +++|++++|+++|++|+.+.++.. ..+++|+++||. |+||+|+++|.+|+||.+|++||++++
T Consensus 1 ~~-~~ly~~~~~-~~~rv~~~L~e~gl~~e~~~v~~~~~~~~~~~~~~~nP~-g~vP~L~~~~~~l~ES~aI~~YL~~~~ 77 (215)
T PLN02395 1 MV-LKVYGPAFA-SPKRALVTLIEKGVEFETVPVDLMKGEHKQPEYLALQPF-GVVPVIVDGDYKIFESRAIMRYYAEKY 77 (215)
T ss_pred Ce-EEEEcCCcC-cHHHHHHHHHHcCCCceEEEeccccCCcCCHHHHhhCCC-CCCCEEEECCEEEEcHHHHHHHHHHHc
Confidence 75 899996554 799999999999999999999875 567899999999 999999999999999999999999999
Q ss_pred CC--CCCCCCCHHHHHHHHHHHHHHhhh-cchhh-----hh-------hcCHHHHHHHHHHHHHHHHHHHhcccCCCCcc
Q 027524 78 PQ--NPLMPSDPYDRAQARFWINFAENK-GAAVW-----KL-------FRSIEDQENTMKEILEMLQIVEEHGLGEKKFF 142 (222)
Q Consensus 78 ~~--~~l~p~~~~~~a~~~~~~~~~~~~-~~~~~-----~~-------~~~~~~~~~~~~~~~~~l~~l~e~~L~~~~~l 142 (222)
++ .+++|.++.++++++.|+.+.+.. .+.+. .. ..+.+..+.....+.+.++.| |+.|++++|+
T Consensus 78 ~~~~~~l~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l-e~~L~~~~~l 156 (215)
T PLN02395 78 RSQGPDLLGKTIEERGQVEQWLDVEATSYHPPLLNLTLHILFASKMGFPADEKVIKESEEKLAKVLDVY-EARLSKSKYL 156 (215)
T ss_pred CCCCcCcCCCChhHHHHHHHHHHHHHHhcCchHHHHHHHHHhhhhccCCCcHHHHHHHHHHHHHHHHHH-HHHhcCCccc
Confidence 74 259999999999999999987755 22221 11 112233455678889999999 9999988999
Q ss_pred ccCCCChhHHHHHHHHHHHHHHHHhhcccccCCCCCchHHHHHHHhcccchhhccCCC
Q 027524 143 HGDKIGLVDIAFGSIVHWLQIIEDIVGVKLFESHKFPGLHAWLKNYKQVPVVEENLPS 200 (222)
Q Consensus 143 ~G~~~s~AD~~l~~~l~~~~~~~~~~~~~~~~~~~~p~l~~w~~~~~~~p~~~~~~~~ 200 (222)
+|+++|+||+++++++.+..... +. ......+|+|.+|++++.++|++++++..
T Consensus 157 ~G~~~s~ADi~l~~~~~~~~~~~---~~-~~~~~~~p~L~~w~~~~~~rp~~k~~~~~ 210 (215)
T PLN02395 157 AGDFVSLADLAHLPFTEYLVGPI---GK-AYLIKDRKHVSAWWDDISSRPAWKEVLAK 210 (215)
T ss_pred cCCCcCHHHHHHHHHHHHHhccc---ch-hhhhccCchHHHHHHHHHcChHHHHHHHH
Confidence 99999999999999877763210 11 11145799999999999999999998753
No 5
>PRK15113 glutathione S-transferase; Provisional
Probab=100.00 E-value=1.1e-34 Score=224.71 Aligned_cols=190 Identities=23% Similarity=0.311 Sum_probs=155.4
Q ss_pred Cc--ceEEeccc--CChhhhHHHHHHHhhCCCeeEEEcCCC---CChhHHHhhCCCCCcccEEEeCCeeeehhHHHHHHH
Q 027524 1 MA--EVKLHGGL--LSPFNYRVVCALKLKGIPFELIKEDLS---NKSALLLKYNPVHKKIPVLVHGGKPVCESMVILEYI 73 (222)
Q Consensus 1 M~--~~~L~~~~--~s~~~~~v~~~l~~~gi~~~~~~v~~~---~~~~~~~~~~p~~g~vP~L~~~g~~l~es~aI~~yL 73 (222)
|+ .|+||+++ .||+|++++++|+++||+|+.+.+++. ...++|+++||. |+||+|++||.+|+||.||++||
T Consensus 1 ~~~~~~~Ly~~~~~~s~~~~rv~~~l~e~gi~~e~~~v~~~~~~~~~~~~~~~nP~-g~VP~L~~~~~~l~ES~aI~~YL 79 (214)
T PRK15113 1 MSKPAITLYSDAHFFSPYVMSAFVALQEKGLPFELKTVDLDAGEHLQPTYQGYSLT-RRVPTLQHDDFELSESSAIAEYL 79 (214)
T ss_pred CCCCeEEEEeCCCCCCchHHHHHHHHHHcCCCCeEEEeCCCCccccCHHHHhcCCC-CCCCEEEECCEEEecHHHHHHHH
Confidence 55 58999976 799999999999999999999999875 356899999999 99999999999999999999999
Q ss_pred HhhCCCCC---CCCCCHHHHHHHHHHHHHHhhhcchhh------hhhc---CHHHHHHHHHHHHHHHHHHHhcccCC-CC
Q 027524 74 EETWPQNP---LMPSDPYDRAQARFWINFAENKGAAVW------KLFR---SIEDQENTMKEILEMLQIVEEHGLGE-KK 140 (222)
Q Consensus 74 ~~~~~~~~---l~p~~~~~~a~~~~~~~~~~~~~~~~~------~~~~---~~~~~~~~~~~~~~~l~~l~e~~L~~-~~ 140 (222)
++++++.. ++|.++.+++++++|+.+++..+.... .++. .....+.....+.+.++.+ |..|++ ++
T Consensus 80 ~~~~~~~~~~~l~p~~~~~ra~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l-e~~L~~~~~ 158 (214)
T PRK15113 80 EERFAPPAWERIYPADLQARARARQIQAWLRSDLMPLREERPTDVVFAGAKKAPLSEAGKAAAEKLFAVA-ERLLAPGQP 158 (214)
T ss_pred HHHcCCCCccccCCCCHHHHHHHHHHHHHHHhhhHHHhccCccchhccCCCCCcccHHHHHHHHHHHHHH-HHHHhcCCC
Confidence 99998665 999999999999999998865422111 1111 1223455667789999999 999974 57
Q ss_pred ccccCCCChhHHHHHHHHHHHHHHHHhhcccccCCCCCchHHHHHHHhcccchhhccCCChH
Q 027524 141 FFHGDKIGLVDIAFGSIVHWLQIIEDIVGVKLFESHKFPGLHAWLKNYKQVPVVEENLPSRD 202 (222)
Q Consensus 141 ~l~G~~~s~AD~~l~~~l~~~~~~~~~~~~~~~~~~~~p~l~~w~~~~~~~p~~~~~~~~~~ 202 (222)
|++|+ +|+||+++++++.++... +.. . .|+|.+|++++.++|+|++++++.+
T Consensus 159 ~l~G~-~TlADi~l~~~l~~~~~~----~~~---~--~p~l~~~~~r~~~rp~~~~~~~~~~ 210 (214)
T PRK15113 159 NLFGE-WCIADTDLALMLNRLVLH----GDE---V--PERLADYATFQWQRASVQRWLALSA 210 (214)
T ss_pred EeeCC-ccHHHHHHHHHHHHHHHc----CCC---C--CHHHHHHHHHHhcCHHHHHHHHHhh
Confidence 99995 999999999998877432 322 1 2999999999999999999886544
No 6
>PRK13972 GSH-dependent disulfide bond oxidoreductase; Provisional
Probab=100.00 E-value=9.3e-35 Score=225.20 Aligned_cols=185 Identities=21% Similarity=0.317 Sum_probs=149.9
Q ss_pred eEEecccCChhhhHHHHHHHhhCCCeeEEEcCCC---CChhHHHhhCCCCCcccEEEe-----CC--eeeehhHHHHHHH
Q 027524 4 VKLHGGLLSPFNYRVVCALKLKGIPFELIKEDLS---NKSALLLKYNPVHKKIPVLVH-----GG--KPVCESMVILEYI 73 (222)
Q Consensus 4 ~~L~~~~~s~~~~~v~~~l~~~gi~~~~~~v~~~---~~~~~~~~~~p~~g~vP~L~~-----~g--~~l~es~aI~~yL 73 (222)
|+||+.+ +++|++|+++|+++||||+.+.+++. ...++|+++||. |+||+|++ +| .+|+||.||++||
T Consensus 2 ~~Ly~~~-~~~~~~v~~~L~e~gl~~e~~~v~~~~~~~~~~~~~~iNP~-gkVP~L~~~~~~d~g~~~~L~ES~AI~~YL 79 (215)
T PRK13972 2 IDLYFAP-TPNGHKITLFLEEAELDYRLIKVDLGKGGQFRPEFLRISPN-NKIPAIVDHSPADGGEPLSLFESGAILLYL 79 (215)
T ss_pred eEEEECC-CCChHHHHHHHHHcCCCcEEEEecCcccccCCHHHHhhCcC-CCCCEEEeCCCCCCCCceeEEcHHHHHHHH
Confidence 7999876 78999999999999999999999875 346889999999 99999997 45 4799999999999
Q ss_pred HhhCCCCCCCCCCHHHHHHHHHHHHHHhhhc-chhh-h-hh------cCHHHHHHHHHHHHHHHHHHHhcccCCCCcccc
Q 027524 74 EETWPQNPLMPSDPYDRAQARFWINFAENKG-AAVW-K-LF------RSIEDQENTMKEILEMLQIVEEHGLGEKKFFHG 144 (222)
Q Consensus 74 ~~~~~~~~l~p~~~~~~a~~~~~~~~~~~~~-~~~~-~-~~------~~~~~~~~~~~~~~~~l~~l~e~~L~~~~~l~G 144 (222)
+++++ .+.|.++.+|++++.|+.+....+ +.+. . .+ .+....+.....+.+.+..| |..|++++|++|
T Consensus 80 ~~~~~--~l~p~~~~~ra~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l-e~~L~~~~~l~G 156 (215)
T PRK13972 80 AEKTG--LFLSHETRERAATLQWLFWQVGGLGPMLGQNHHFNHAAPQTIPYAIERYQVETQRLYHVL-NKRLENSPWLGG 156 (215)
T ss_pred HHhcC--CCCCCCHHHHHHHHHHHHHHhhccCcceeeeeeeeccCCCCCchHHHHHHHHHHHHHHHH-HHHhccCccccC
Confidence 99986 377889999999999999887652 2221 1 11 11234455667788999999 999998899999
Q ss_pred CCCChhHHHHHHHHHHHHHHHHhhcccccCCCCCchHHHHHHHhcccchhhccCCC
Q 027524 145 DKIGLVDIAFGSIVHWLQIIEDIVGVKLFESHKFPGLHAWLKNYKQVPVVEENLPS 200 (222)
Q Consensus 145 ~~~s~AD~~l~~~l~~~~~~~~~~~~~~~~~~~~p~l~~w~~~~~~~p~~~~~~~~ 200 (222)
+++|+||+++++.+...... + ++.+.||+|.+|++++.++|++++++..
T Consensus 157 d~~t~ADi~l~~~~~~~~~~----~---~~~~~~P~l~~w~~r~~~rp~~~~~~~~ 205 (215)
T PRK13972 157 ENYSIADIACWPWVNAWTRQ----R---IDLAMYPAVKNWHERIRSRPATGQALLK 205 (215)
T ss_pred CCCCHHHHHHHHHHHHHhhc----C---CcchhCHHHHHHHHHHHhCHHHHHHHHH
Confidence 99999999998876544211 2 2245899999999999999999987653
No 7
>PRK10542 glutathionine S-transferase; Provisional
Probab=100.00 E-value=9.9e-35 Score=222.79 Aligned_cols=187 Identities=20% Similarity=0.408 Sum_probs=154.5
Q ss_pred eEEecccCChhhhHHHHHHHhhCCCeeEEEcCCC----CChhHHHhhCCCCCcccEEE-eCCeeeehhHHHHHHHHhhCC
Q 027524 4 VKLHGGLLSPFNYRVVCALKLKGIPFELIKEDLS----NKSALLLKYNPVHKKIPVLV-HGGKPVCESMVILEYIEETWP 78 (222)
Q Consensus 4 ~~L~~~~~s~~~~~v~~~l~~~gi~~~~~~v~~~----~~~~~~~~~~p~~g~vP~L~-~~g~~l~es~aI~~yL~~~~~ 78 (222)
|+|||.+.| ++++++++|+++||+|+.+.+++. ..+++|+++||. |+||+|+ +||.+|+||.+|++||+++++
T Consensus 1 m~l~~~~~s-~~~~~~~~L~~~gi~~e~~~v~~~~~~~~~~~~~~~~nP~-g~vPvL~~~~g~~l~eS~aI~~YL~~~~~ 78 (201)
T PRK10542 1 MKLFYKPGA-CSLASHITLRESGLDFTLVSVDLAKKRLENGDDYLAINPK-GQVPALLLDDGTLLTEGVAIMQYLADSVP 78 (201)
T ss_pred CceeecccH-HHHHHHHHHHHcCCCceEEEeecccccccCChHHHHhCcC-CCCCeEEeCCCcEeecHHHHHHHHHHhCc
Confidence 589998766 799999999999999999999875 245789999999 9999998 588999999999999999998
Q ss_pred CCCCC-CCCHHHHHHHHHHHHHHhhh-cchhhhhhcC---HHHHHHHHHHHHHHHHHHHhcccCCCCccccCCCChhHHH
Q 027524 79 QNPLM-PSDPYDRAQARFWINFAENK-GAAVWKLFRS---IEDQENTMKEILEMLQIVEEHGLGEKKFFHGDKIGLVDIA 153 (222)
Q Consensus 79 ~~~l~-p~~~~~~a~~~~~~~~~~~~-~~~~~~~~~~---~~~~~~~~~~~~~~l~~l~e~~L~~~~~l~G~~~s~AD~~ 153 (222)
+++++ |.++.++++++.|+.++.+. .+.+..++.. ++........+.+.++.| |+.|++++|++|+++|+||++
T Consensus 79 ~~~l~~p~~~~~ra~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l-e~~L~~~~~l~G~~~s~ADi~ 157 (201)
T PRK10542 79 DRQLLAPVGSLSRYHTIEWLNYIATELHKGFTPLFRPDTPEEYKPTVRAQLEKKFQYV-DEALADEQWICGQRFTIADAY 157 (201)
T ss_pred ccccCCCCCcHHHHHHHHHHHHHHhhhhhhhhhccCCCChHHHHHHHHHHHHHHHHHH-HHHhcCCCeeeCCCCcHHhHH
Confidence 77766 66788999999999887655 3333322221 223345677899999999 999998899999999999999
Q ss_pred HHHHHHHHHHHHHhhcccccCCCCCchHHHHHHHhcccchhhccCCC
Q 027524 154 FGSIVHWLQIIEDIVGVKLFESHKFPGLHAWLKNYKQVPVVEENLPS 200 (222)
Q Consensus 154 l~~~l~~~~~~~~~~~~~~~~~~~~p~l~~w~~~~~~~p~~~~~~~~ 200 (222)
+++++.+.... +.+ ...+|+|.+|++++.++|++++++..
T Consensus 158 l~~~~~~~~~~----~~~---~~~~p~l~~w~~~~~~~p~~k~~~~~ 197 (201)
T PRK10542 158 LFTVLRWAYAV----KLN---LEGLEHIAAYMQRVAERPAVAAALKA 197 (201)
T ss_pred HHHHHHHhhcc----CCC---cccchHHHHHHHHHHcCHHHHHHHHH
Confidence 99988877332 322 35899999999999999999998753
No 8
>PRK10357 putative glutathione S-transferase; Provisional
Probab=100.00 E-value=1.4e-33 Score=216.67 Aligned_cols=190 Identities=26% Similarity=0.318 Sum_probs=155.6
Q ss_pred eEEecccCChhhhHHHHHHHhhCCCeeEEEcCCCCChhHHHhhCCCCCcccEEE-eCCeeeehhHHHHHHHHhhCCCCCC
Q 027524 4 VKLHGGLLSPFNYRVVCALKLKGIPFELIKEDLSNKSALLLKYNPVHKKIPVLV-HGGKPVCESMVILEYIEETWPQNPL 82 (222)
Q Consensus 4 ~~L~~~~~s~~~~~v~~~l~~~gi~~~~~~v~~~~~~~~~~~~~p~~g~vP~L~-~~g~~l~es~aI~~yL~~~~~~~~l 82 (222)
|+||+++.||++++|+++|+++||+|+.+.++......++.+.||. |+||+|+ ++|.+|+||.+|++||+++++.+.|
T Consensus 1 ~~Ly~~~~s~~~~~v~~~L~~~gv~ye~~~~~~~~~~~~~~~~nP~-g~vP~L~~~~g~~l~eS~aI~~yL~~~~~~~~l 79 (202)
T PRK10357 1 MKLIGSYTSPFVRKISILLLEKGITFEFVNELPYNADNGVAQYNPL-GKVPALVTEEGECWFDSPIIAEYIELLNVAPAM 79 (202)
T ss_pred CeeecCCCCchHHHHHHHHHHcCCCCeEEecCCCCCchhhhhcCCc-cCCCeEEeCCCCeeecHHHHHHHHHHhCCCCCC
Confidence 5899999999999999999999999999999877667788899999 9999998 5889999999999999999987779
Q ss_pred CCCCHHHHHHHHHHHHHHhhhcc-hh---hhh-hc----CHHHHHHHHHHHHHHHHHHHhcccCCCCccccCCCChhHHH
Q 027524 83 MPSDPYDRAQARFWINFAENKGA-AV---WKL-FR----SIEDQENTMKEILEMLQIVEEHGLGEKKFFHGDKIGLVDIA 153 (222)
Q Consensus 83 ~p~~~~~~a~~~~~~~~~~~~~~-~~---~~~-~~----~~~~~~~~~~~~~~~l~~l~e~~L~~~~~l~G~~~s~AD~~ 153 (222)
+|.++.+++++++|..++++... .. ... .. .....+.....+.+.|+.| |++|++++ ++|+++|+||++
T Consensus 80 ~p~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~l-e~~L~~~~-l~Gd~~t~ADi~ 157 (202)
T PRK10357 80 LPRDPLAALRVRQLEALADGIMDAALVSVREQARPAAQQSEDELLRQREKINRSLDAL-EGYLVDGT-LKTDTVNLATIA 157 (202)
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCccccccHHHHHHHHHHHHHHHHHH-HHhhccCc-ccCCCcCHHHHH
Confidence 99999999999999887665521 11 111 11 1223345677899999999 99998778 999999999999
Q ss_pred HHHHHHHHHHHHHhhcccccCCCCCchHHHHHHHhcccchhhccCCC
Q 027524 154 FGSIVHWLQIIEDIVGVKLFESHKFPGLHAWLKNYKQVPVVEENLPS 200 (222)
Q Consensus 154 l~~~l~~~~~~~~~~~~~~~~~~~~p~l~~w~~~~~~~p~~~~~~~~ 200 (222)
+++.+.+...... +... ..++|+|.+|++++.++|+|+++.+.
T Consensus 158 l~~~l~~~~~~~~--~~~~--~~~~p~l~~~~~~i~~rp~~~~~~~~ 200 (202)
T PRK10357 158 IACAVGYLNFRRV--APGW--CVDRPHLVKLVENLFQRESFARTEPP 200 (202)
T ss_pred HHHHHHHHHhccc--Ccch--hhcChHHHHHHHHHhcChhhhhcCCC
Confidence 9999887743211 1111 24799999999999999999998764
No 9
>TIGR01262 maiA maleylacetoacetate isomerase. Maleylacetoacetate isomerase is an enzyme of tyrosine and phenylalanine catabolism. It requires glutathione and belongs by homology to the zeta family of glutathione S-transferases. The enzyme (EC 5.2.1.2) is described as active also on maleylpyruvate, and the example from a Ralstonia sp. catabolic plasmid is described as a maleylpyruvate isomerase involved in gentisate catabolism.
Probab=100.00 E-value=9.8e-34 Score=218.69 Aligned_cols=188 Identities=29% Similarity=0.397 Sum_probs=155.2
Q ss_pred EEecccCChhhhHHHHHHHhhCCCeeEEEcCCC----CChhHHHhhCCCCCcccEEEeCCeeeehhHHHHHHHHhhCCCC
Q 027524 5 KLHGGLLSPFNYRVVCALKLKGIPFELIKEDLS----NKSALLLKYNPVHKKIPVLVHGGKPVCESMVILEYIEETWPQN 80 (222)
Q Consensus 5 ~L~~~~~s~~~~~v~~~l~~~gi~~~~~~v~~~----~~~~~~~~~~p~~g~vP~L~~~g~~l~es~aI~~yL~~~~~~~ 80 (222)
+||+++.||++++++++|+++||+|+.+.++.. ...++++++||. |+||+|+++|.+|+||.+|++||++++++.
T Consensus 1 ~Ly~~~~s~~~~~v~~~l~~~gi~~~~~~v~~~~~~~~~~~~~~~~nP~-g~vP~L~~~g~~l~ES~aI~~yl~~~~~~~ 79 (210)
T TIGR01262 1 KLYSYWRSSCSYRVRIALALKGIDYEYVPVNLLRDGEQRSPEFLALNPQ-GLVPTLDIDGEVLTQSLAIIEYLEETYPDP 79 (210)
T ss_pred CcccCCCCCchHHHHHHHHHCCCCceEEecccccccccCChhhhhcCCC-CcCCEEEECCEEeecHHHHHHHHHHhCCCC
Confidence 589999999999999999999999999999862 356789999998 999999999999999999999999999877
Q ss_pred CCCCCCHHHHHHHHHHHHHHhhhcch-----hhhhh-----cCHH-HHHHHHHHHHHHHHHHHhcccCC--CCccccCCC
Q 027524 81 PLMPSDPYDRAQARFWINFAENKGAA-----VWKLF-----RSIE-DQENTMKEILEMLQIVEEHGLGE--KKFFHGDKI 147 (222)
Q Consensus 81 ~l~p~~~~~~a~~~~~~~~~~~~~~~-----~~~~~-----~~~~-~~~~~~~~~~~~l~~l~e~~L~~--~~~l~G~~~ 147 (222)
.++|.++.+++++++|+.+++..+.. +.... ...+ ..+...+.+.+.|+.| |++|++ ++|++|+++
T Consensus 80 ~l~p~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l-e~~L~~~~~~~l~G~~~ 158 (210)
T TIGR01262 80 PLLPADPIKRARVRALALLIACDIHPLNNLRVLQYLREKLGVEEEARNRWYQHWISKGFAAL-EALLQPHAGAFCVGDTP 158 (210)
T ss_pred CCCCCCHHHHHHHHHHHHHHhcccChhhhhhHHHHHHhhcCCCHHHHHHHHHHHHHHHHHHH-HHHHhcCCCCEeeCCCC
Confidence 79999999999999999888654221 11111 1122 2334556789999999 999975 569999999
Q ss_pred ChhHHHHHHHHHHHHHHHHhhcccccCCCCCchHHHHHHHhcccchhhccCCCh
Q 027524 148 GLVDIAFGSIVHWLQIIEDIVGVKLFESHKFPGLHAWLKNYKQVPVVEENLPSR 201 (222)
Q Consensus 148 s~AD~~l~~~l~~~~~~~~~~~~~~~~~~~~p~l~~w~~~~~~~p~~~~~~~~~ 201 (222)
|+||+++++.+.+.... +. +.++||+|++|+++|.++|++++++...
T Consensus 159 T~ADi~~~~~l~~~~~~----~~---~~~~~p~l~~~~~~~~~rp~~~~~~~~~ 205 (210)
T TIGR01262 159 TLADLCLVPQVYNAERF----GV---DLTPYPTLRRIAAALAALPAFQRAHPEN 205 (210)
T ss_pred CHHHHHHHHHHHHHHHc----CC---CcccchHHHHHHHHHhcCHHHHHhCccc
Confidence 99999999998877422 22 2458999999999999999999988754
No 10
>TIGR00862 O-ClC intracellular chloride channel protein. These proteins are thought to function in the regulation of the membrane potential and in transepithelial ion absorption and secretion in the kidney.
Probab=100.00 E-value=8.8e-33 Score=214.54 Aligned_cols=192 Identities=22% Similarity=0.306 Sum_probs=155.7
Q ss_pred cCChhhhHHHHHHHhhCCCeeEEEcCCCCChhHHHhhCCCCCcccEEEeCCeeeehhHHHHHHHHhhCCC---CCCCCCC
Q 027524 10 LLSPFNYRVVCALKLKGIPFELIKEDLSNKSALLLKYNPVHKKIPVLVHGGKPVCESMVILEYIEETWPQ---NPLMPSD 86 (222)
Q Consensus 10 ~~s~~~~~v~~~l~~~gi~~~~~~v~~~~~~~~~~~~~p~~g~vP~L~~~g~~l~es~aI~~yL~~~~~~---~~l~p~~ 86 (222)
..||+|++++++|.++||+|+.+.+++..++++|+++||. |+||+|+++|.+|+||.+|++||+++++. +.+.|.+
T Consensus 17 ~~cp~~~rv~i~L~ekgi~~e~~~vd~~~~~~~fl~inP~-g~vPvL~~~g~~l~ES~aI~eYL~e~~~~~~~p~l~p~~ 95 (236)
T TIGR00862 17 GNCPFSQRLFMILWLKGVVFNVTTVDLKRKPEDLQNLAPG-THPPFLTYNTEVKTDVNKIEEFLEETLCPPRYPKLSPKH 95 (236)
T ss_pred CCCHhHHHHHHHHHHcCCCcEEEEECCCCCCHHHHHHCcC-CCCCEEEECCEEeecHHHHHHHHHHHcCCCCCCCCCCCC
Confidence 5799999999999999999999999999889999999998 99999999999999999999999999964 3456667
Q ss_pred HHHHHHHHHHHHHHhhhcchhhhhh--cCHHHHHHHHHHHHHHHHHHHhcccC------------------CCCccccCC
Q 027524 87 PYDRAQARFWINFAENKGAAVWKLF--RSIEDQENTMKEILEMLQIVEEHGLG------------------EKKFFHGDK 146 (222)
Q Consensus 87 ~~~~a~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~l~~l~e~~L~------------------~~~~l~G~~ 146 (222)
+..++.... .++.+..+. ..+...+...+.+.+.+..| |++|. +++|+.|++
T Consensus 96 ~~~~~~~~~-------l~~~~~~~~~~~~~~~~~~~~~~l~~~l~~L-e~~L~~~~~~~~~~~~~~~~~~~~~~f~~Gd~ 167 (236)
T TIGR00862 96 PESNTAGLD-------IFAKFSAYIKNSNPEANDNLEKGLLKALKKL-DDYLNSPLPEEIDEDSAEDEKVSRRKFLDGDE 167 (236)
T ss_pred HHHHHHHHH-------HHHHHHHHHHcCCHHHHHHHHHHHHHHHHHH-HHHHhccccccccccccccccccCCCcccCCc
Confidence 655543211 122222211 12334445566789999999 88886 579999999
Q ss_pred CChhHHHHHHHHHHHHHHH-HhhcccccCCCCCchHHHHHHHhcccchhhccCCChHHHHHHHHHHH
Q 027524 147 IGLVDIAFGSIVHWLQIIE-DIVGVKLFESHKFPGLHAWLKNYKQVPVVEENLPSRDELLVFFKGRY 212 (222)
Q Consensus 147 ~s~AD~~l~~~l~~~~~~~-~~~~~~~~~~~~~p~l~~w~~~~~~~p~~~~~~~~~~~~~~~~~~~~ 212 (222)
+|+|||++++.++++..+. ...|.++ .+++|+|.+|++++.++|+|+++++..+++.....+..
T Consensus 168 ~tlaD~~l~p~l~~l~~~~~~~~~~~i--~~~~p~l~~w~~~~~~~~sf~~t~p~~~~i~~~~~~~~ 232 (236)
T TIGR00862 168 LTLADCNLLPKLHIVKVVAKKYRNFDI--PAEFTGVWRYLSNAYAREEFTNTCPDDKEIELAYADVA 232 (236)
T ss_pred cchhhHHHHHHHHHHHHHHHHHhCcCc--cccCchHHHHHHHHhccchHHhhCCChHHHHHHHHHHh
Confidence 9999999999999997653 3346555 56999999999999999999999999999888777663
No 11
>PRK11752 putative S-transferase; Provisional
Probab=100.00 E-value=2.5e-33 Score=222.99 Aligned_cols=194 Identities=19% Similarity=0.282 Sum_probs=153.7
Q ss_pred ceEEecccCChhhhHHHHHHHhh------CCCeeEEEcCCC---CChhHHHhhCCCCCcccEEEeC----CeeeehhHHH
Q 027524 3 EVKLHGGLLSPFNYRVVCALKLK------GIPFELIKEDLS---NKSALLLKYNPVHKKIPVLVHG----GKPVCESMVI 69 (222)
Q Consensus 3 ~~~L~~~~~s~~~~~v~~~l~~~------gi~~~~~~v~~~---~~~~~~~~~~p~~g~vP~L~~~----g~~l~es~aI 69 (222)
+|+||+.+ ||+|++|+++|+++ |++|+.+.+++. ..+++|+++||. |+||+|+++ |.+|+||.||
T Consensus 44 ~~~Ly~~~-s~~~~rV~i~L~e~~~~~~~gl~ye~~~v~~~~~~~~~~e~~~iNP~-GkVP~Lv~~dg~~~~~L~ES~AI 121 (264)
T PRK11752 44 PLQLYSLG-TPNGQKVTIMLEELLALGVKGAEYDAWLIRIGEGDQFSSGFVEINPN-SKIPALLDRSGNPPIRVFESGAI 121 (264)
T ss_pred CeEEecCC-CCchHHHHHHHHHHHhccCCCCceEEEEecCccccccCHHHHhhCCC-CCCCEEEeCCCCCCeEEEcHHHH
Confidence 58999864 99999999999997 999999999875 457899999999 999999974 3689999999
Q ss_pred HHHHHhhCCCCCCCCCCHHHHHHHHHHHHHHhhhcchh----hhhh---cC--HHHHHHHHHHHHHHHHHHHhcccCCCC
Q 027524 70 LEYIEETWPQNPLMPSDPYDRAQARFWINFAENKGAAV----WKLF---RS--IEDQENTMKEILEMLQIVEEHGLGEKK 140 (222)
Q Consensus 70 ~~yL~~~~~~~~l~p~~~~~~a~~~~~~~~~~~~~~~~----~~~~---~~--~~~~~~~~~~~~~~l~~l~e~~L~~~~ 140 (222)
++||+++++. |+|.++.++++++.|+.+.....+.+ ..++ .. ....+.....+.+.|+.| |+.|++++
T Consensus 122 l~YL~~~~~~--L~P~~~~era~v~~wl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~l-e~~L~~~~ 198 (264)
T PRK11752 122 LLYLAEKFGA--FLPKDLAARTETLNWLFWQQGSAPFLGGGFGHFYAYAPEKIEYAINRFTMEAKRQLDVL-DKQLAEHE 198 (264)
T ss_pred HHHHHHhcCC--cCCCCHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHhCCccchHHHHHHHHHHHHHHHHH-HHHhccCC
Confidence 9999999873 99999999999999998876542211 1111 11 223345566788999999 99999889
Q ss_pred ccccCCCChhHHHHHHHHHHHHHHHHhhcccccCCCCCchHHHHHHHhcccchhhccCCCh
Q 027524 141 FFHGDKIGLVDIAFGSIVHWLQIIEDIVGVKLFESHKFPGLHAWLKNYKQVPVVEENLPSR 201 (222)
Q Consensus 141 ~l~G~~~s~AD~~l~~~l~~~~~~~~~~~~~~~~~~~~p~l~~w~~~~~~~p~~~~~~~~~ 201 (222)
|++|+++|+||+++++.+.++.........+..+.+.||+|.+|++++.++|++++++...
T Consensus 199 fl~Gd~~TlADi~l~~~l~~l~~~~~~~~~~~~~~~~~P~L~~w~~rv~~rPs~k~~~~~~ 259 (264)
T PRK11752 199 YIAGDEYTIADIAIWPWYGNLVLGNLYDAAEFLDVGSYKHVQRWAKEIAERPAVKRGRIVN 259 (264)
T ss_pred CCCCCccCHHHHHHHHHHHHHhhccccccccccCcccCHHHHHHHHHHHhCHHHHHHHhcc
Confidence 9999999999999999887764311000111223468999999999999999999987644
No 12
>COG0625 Gst Glutathione S-transferase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=3.3e-33 Score=215.94 Aligned_cols=183 Identities=32% Similarity=0.572 Sum_probs=155.5
Q ss_pred eEEecccCChhhhHHHHHHHhhCCCeeEEEcCCC--CChhHHHhhCCCCCcccEEEeCCe-eeehhHHHHHHHHhhCCCC
Q 027524 4 VKLHGGLLSPFNYRVVCALKLKGIPFELIKEDLS--NKSALLLKYNPVHKKIPVLVHGGK-PVCESMVILEYIEETWPQN 80 (222)
Q Consensus 4 ~~L~~~~~s~~~~~v~~~l~~~gi~~~~~~v~~~--~~~~~~~~~~p~~g~vP~L~~~g~-~l~es~aI~~yL~~~~~~~ 80 (222)
|+||+.+.||+|+++++++.++|+||+.+.++.. ..+++|+.+||. |+||+|+++|. +|+||.||++||++++|++
T Consensus 1 ~~L~~~~~sp~~~kv~l~l~e~g~~ye~~~v~~~~~~~~~~~~~~nP~-gkVPvL~~~~~~~l~ES~AI~~YL~~~~~~~ 79 (211)
T COG0625 1 MKLYGSPTSPYSRKVRLALEEKGLPYEIVLVDLDAEQKPPDFLALNPL-GKVPALVDDDGEVLTESGAILEYLAERYPGP 79 (211)
T ss_pred CeeecCCCCcchHHHHHHHHHcCCCceEEEeCcccccCCHHHHhcCCC-CCCCEEeeCCCCeeecHHHHHHHHHhhCCCC
Confidence 5899999999999999999999999999999987 588999999999 99999998654 8999999999999999977
Q ss_pred CCCCCCHH---HHHHHHHHHHHHhhh-cchhhhhh-c--------CHHHHHHHHHHHHHHHHHHHhcccCCCCccccCCC
Q 027524 81 PLMPSDPY---DRAQARFWINFAENK-GAAVWKLF-R--------SIEDQENTMKEILEMLQIVEEHGLGEKKFFHGDKI 147 (222)
Q Consensus 81 ~l~p~~~~---~~a~~~~~~~~~~~~-~~~~~~~~-~--------~~~~~~~~~~~~~~~l~~l~e~~L~~~~~l~G~~~ 147 (222)
+++|.++. +|+++..|+.++... .+.+.... . .....+.....+...++.+ |..|+.++|++|+++
T Consensus 80 ~l~p~~~~~r~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l-e~~L~~~~~l~G~~~ 158 (211)
T COG0625 80 PLLPADPLARRARALLLWWLFFAASDLHPVIGQRRRALLGSEPELLEAALEAARAEIRALLALL-EALLADGPYLAGDRF 158 (211)
T ss_pred CcCCCCchhHHHHHHHHHHHHHHHhcccHHHHHHHhhhccccccccHHHHHHHHHHHHHHHHHH-HHHhccCCcccCCCC
Confidence 69998885 788888999888655 33332111 1 2455667788999999999 999999999999999
Q ss_pred ChhHHHHHHHHHHHHHHHHhhcccccCCCCCchHHHHHHHhcccchhh
Q 027524 148 GLVDIAFGSIVHWLQIIEDIVGVKLFESHKFPGLHAWLKNYKQVPVVE 195 (222)
Q Consensus 148 s~AD~~l~~~l~~~~~~~~~~~~~~~~~~~~p~l~~w~~~~~~~p~~~ 195 (222)
|+||+++++.+.++... +.. .+.+|++.+|++|+.++|+++
T Consensus 159 tiAD~~~~~~~~~~~~~----~~~---~~~~p~l~~w~~r~~~rp~~~ 199 (211)
T COG0625 159 TIADIALAPLLWRLALL----GEE---LADYPALKAWYERVLARPAFR 199 (211)
T ss_pred CHHHHHHHHHHHHhhhc----Ccc---cccChHHHHHHHHHHcCCchh
Confidence 99999999999986433 322 258999999999999999965
No 13
>KOG0868 consensus Glutathione S-transferase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1.3e-33 Score=202.01 Aligned_cols=190 Identities=26% Similarity=0.395 Sum_probs=163.7
Q ss_pred ceEEecccCChhhhHHHHHHHhhCCCeeEEEcCCC----CChhHHHhhCCCCCcccEEEeCCeeeehhHHHHHHHHhhCC
Q 027524 3 EVKLHGGLLSPFNYRVVCALKLKGIPFELIKEDLS----NKSALLLKYNPVHKKIPVLVHGGKPVCESMVILEYIEETWP 78 (222)
Q Consensus 3 ~~~L~~~~~s~~~~~v~~~l~~~gi~~~~~~v~~~----~~~~~~~~~~p~~g~vP~L~~~g~~l~es~aI~~yL~~~~~ 78 (222)
+..||+++.|.+++|||++|+.+||+|+..+|++- +...+|.+.||+ ++||+|++||.+|+||.||++||++.+|
T Consensus 5 KpiLYSYWrSSCswRVRiALaLK~iDYey~PvnLlk~~~q~~~ef~~iNPm-~kVP~L~i~g~tl~eS~AII~YLeEt~P 83 (217)
T KOG0868|consen 5 KPILYSYWRSSCSWRVRIALALKGIDYEYKPVNLLKEEDQSDSEFKEINPM-EKVPTLVIDGLTLTESLAIIEYLEETYP 83 (217)
T ss_pred cchhhhhhcccchHHHHHHHHHcCCCcceeehhhhcchhhhhhHHhhcCch-hhCCeEEECCEEeehHHHHHHHHHhcCC
Confidence 68899999999999999999999999999999875 456789999999 8999999999999999999999999999
Q ss_pred CCCCCCCCHHHHHHHHHHHHHHhhhcchh---h--hhhcCHH---HHHHHHHHHHHHHHHHHhcccC--CCCccccCCCC
Q 027524 79 QNPLMPSDPYDRAQARFWINFAENKGAAV---W--KLFRSIE---DQENTMKEILEMLQIVEEHGLG--EKKFFHGDKIG 148 (222)
Q Consensus 79 ~~~l~p~~~~~~a~~~~~~~~~~~~~~~~---~--~~~~~~~---~~~~~~~~~~~~l~~l~e~~L~--~~~~l~G~~~s 148 (222)
+++|+|.|+..|+.++++...+.+.+..+ . .+...++ ....+..-+.+.|..| |+.|. .+.|-+|+++|
T Consensus 84 ~ppLLP~d~~KRA~~r~i~~~i~sgIQPlQNl~vl~~l~ek~~~~~~~W~q~~ItkGF~AL-EklL~~~aGkycvGDevt 162 (217)
T KOG0868|consen 84 DPPLLPKDPHKRAKARAISLLIASGIQPLQNLSVLKMLNEKEPGYGDQWAQHFITKGFTAL-EKLLKSHAGKYCVGDEVT 162 (217)
T ss_pred CCCCCCcCHHHHHHHHHHHHHHHhCCCcchhhHHHHHhcccccchhhHHHHHHHHHhHHHH-HHHHHHccCCcccCceee
Confidence 99999999999999999999888773333 2 2222222 2566778889999999 99995 67899999999
Q ss_pred hhHHHHHHHHHHHHHHHHhhcccccCCCCCchHHHHHHHhcccchhhccCCCh
Q 027524 149 LVDIAFGSIVHWLQIIEDIVGVKLFESHKFPGLHAWLKNYKQVPVVEENLPSR 201 (222)
Q Consensus 149 ~AD~~l~~~l~~~~~~~~~~~~~~~~~~~~p~l~~w~~~~~~~p~~~~~~~~~ 201 (222)
+||+++.+.+...... . ++...||.+.+..+.+.+.|+|+.+.++.
T Consensus 163 iADl~L~pqv~nA~rf----~---vdl~PYPti~ri~e~l~elpaFq~ahP~n 208 (217)
T KOG0868|consen 163 IADLCLPPQVYNANRF----H---VDLTPYPTITRINEELAELPAFQAAHPDN 208 (217)
T ss_pred hhhhccchhhhhhhhc----c---ccCCcCchHHHHHHHHHhCHHHHhcCCCC
Confidence 9999999988887433 2 34678999999999999999999987643
No 14
>PLN02378 glutathione S-transferase DHAR1
Probab=100.00 E-value=2.3e-32 Score=211.35 Aligned_cols=185 Identities=23% Similarity=0.376 Sum_probs=144.5
Q ss_pred ccCChhhhHHHHHHHhhCCCeeEEEcCCCCChhHHHhhCCCCCcccEEEeCCeeeehhHHHHHHHHhhCCCCCCCCCCHH
Q 027524 9 GLLSPFNYRVVCALKLKGIPFELIKEDLSNKSALLLKYNPVHKKIPVLVHGGKPVCESMVILEYIEETWPQNPLMPSDPY 88 (222)
Q Consensus 9 ~~~s~~~~~v~~~l~~~gi~~~~~~v~~~~~~~~~~~~~p~~g~vP~L~~~g~~l~es~aI~~yL~~~~~~~~l~p~~~~ 88 (222)
+..||||++|+++|+++|++|+.+.+++..++++|+++||. |+||+|+++|.+|+||.+|++||++++++..+ .++.
T Consensus 17 ~~~~p~~~rv~~~L~e~gl~~e~~~v~~~~~~~~~l~inP~-G~VPvL~~~~~~l~ES~aI~~YL~~~~~~~~l--~~~~ 93 (213)
T PLN02378 17 LGDCPFSQRALLTLEEKSLTYKIHLINLSDKPQWFLDISPQ-GKVPVLKIDDKWVTDSDVIVGILEEKYPDPPL--KTPA 93 (213)
T ss_pred CCCCcchHHHHHHHHHcCCCCeEEEeCcccCCHHHHHhCCC-CCCCEEEECCEEecCHHHHHHHHHHhCCCCCC--CCHH
Confidence 34699999999999999999999999998888899999998 99999999999999999999999999986555 3566
Q ss_pred HHHHHHHHHHHHhhhcchhhhhhcCHHHHHHHHHHHHHHHHHHHhcccC--CCCccccCCCChhHHHHHHHHHHHHHHHH
Q 027524 89 DRAQARFWINFAENKGAAVWKLFRSIEDQENTMKEILEMLQIVEEHGLG--EKKFFHGDKIGLVDIAFGSIVHWLQIIED 166 (222)
Q Consensus 89 ~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~e~~L~--~~~~l~G~~~s~AD~~l~~~l~~~~~~~~ 166 (222)
+++++...+. ..+..+.......+.....+.+.|+.+ |+.|+ +++|++|+++|+||+++++.+.++.....
T Consensus 94 ~~a~i~~~~~------~~~~~~~~~~~~~~~~~~~~~~~l~~l-e~~L~~~~~~fl~Gd~~T~ADi~l~~~~~~l~~~~~ 166 (213)
T PLN02378 94 EFASVGSNIF------GTFGTFLKSKDSNDGSEHALLVELEAL-ENHLKSHDGPFIAGERVSAVDLSLAPKLYHLQVALG 166 (213)
T ss_pred HHHHHHHHHH------HHHHHHHhcCChhhHHHHHHHHHHHHH-HHHHhcCCCCCcCCCCCchhhHHHHHHHHHHHHHHH
Confidence 7776654332 112222211112233446777889999 99997 57899999999999999999888754322
Q ss_pred -hhcccccCCCCCchHHHHHHHhcccchhhccCCChHHHH
Q 027524 167 -IVGVKLFESHKFPGLHAWLKNYKQVPVVEENLPSRDELL 205 (222)
Q Consensus 167 -~~~~~~~~~~~~p~l~~w~~~~~~~p~~~~~~~~~~~~~ 205 (222)
..+.+. .+.+|+|.+|++++.++|++++++..+....
T Consensus 167 ~~~~~~~--~~~~p~l~~w~~~~~~rpa~~~~~~~~~~~~ 204 (213)
T PLN02378 167 HFKSWSV--PESFPHVHNYMKTLFSLDSFEKTKTEEKYVI 204 (213)
T ss_pred HhcCCCc--hhHhHHHHHHHHHHhcCCCeecccCChHHHH
Confidence 112222 3589999999999999999999988765543
No 15
>PTZ00057 glutathione s-transferase; Provisional
Probab=100.00 E-value=3.6e-32 Score=209.14 Aligned_cols=189 Identities=15% Similarity=0.145 Sum_probs=143.1
Q ss_pred Cc-ceEEecccCChhhhHHHHHHHhhCCCeeEEEcCCCCChhHHH--------hhCCCCCcccEEEeCCeeeehhHHHHH
Q 027524 1 MA-EVKLHGGLLSPFNYRVVCALKLKGIPFELIKEDLSNKSALLL--------KYNPVHKKIPVLVHGGKPVCESMVILE 71 (222)
Q Consensus 1 M~-~~~L~~~~~s~~~~~v~~~l~~~gi~~~~~~v~~~~~~~~~~--------~~~p~~g~vP~L~~~g~~l~es~aI~~ 71 (222)
|+ +++|||++.+++++++|++|+++||+|+.+.++.. .. +++ ..||+ |+||+|++||.+|+||.||++
T Consensus 1 m~~~~~L~y~~~~~~~~~vrl~L~~~gi~ye~~~~~~~-~~-~~~~~~~~~~~~~nP~-g~vP~L~~~~~~l~eS~AI~~ 77 (205)
T PTZ00057 1 MAEEIVLYYFDARGKAELIRLIFAYLGIEYTDKRFGEN-GD-AFIEFKNFKKEKDTPF-EQVPILEMDNIIFAQSQAIVR 77 (205)
T ss_pred CCCceEEEecCCCcchHHHHHHHHHcCCCeEEEecccc-ch-HHHHHHhccccCCCCC-CCCCEEEECCEEEecHHHHHH
Confidence 66 68999999999999999999999999999987532 22 333 47998 999999999999999999999
Q ss_pred HHHhhCCCCCCCCCCHHHHHHHHHHHHHHhhhcchhhh-hhcCHHHHHHHHHHHHHHHHHHHhcccCC--CCccccCCCC
Q 027524 72 YIEETWPQNPLMPSDPYDRAQARFWINFAENKGAAVWK-LFRSIEDQENTMKEILEMLQIVEEHGLGE--KKFFHGDKIG 148 (222)
Q Consensus 72 yL~~~~~~~~l~p~~~~~~a~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~l~~l~e~~L~~--~~~l~G~~~s 148 (222)
||+++++ +.+.+..+++.++.+...+.+....+.. .....+..+.....+.+.+..| |+.|++ ++|++|+++|
T Consensus 78 YLa~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l-e~~L~~~~~~~l~Gd~~T 153 (205)
T PTZ00057 78 YLSKKYK---ICGESELNEFYADMIFCGVQDIHYKFNNTNLFKQNETTFLNEELPKWSGYF-ENILKKNHCNYFVGDNLT 153 (205)
T ss_pred HHHHHcC---CCCCCHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHH-HHHHHhCCCCeeeCCccc
Confidence 9999997 4566665555555444333232221111 1111223345568889999999 999964 3899999999
Q ss_pred hhHHHHHHHHHHHHHHHHhhcccccCCCCCchHHHHHHHhcccchhhccCCChH
Q 027524 149 LVDIAFGSIVHWLQIIEDIVGVKLFESHKFPGLHAWLKNYKQVPVVEENLPSRD 202 (222)
Q Consensus 149 ~AD~~l~~~l~~~~~~~~~~~~~~~~~~~~p~l~~w~~~~~~~p~~~~~~~~~~ 202 (222)
+||+++++.+.++.... + .+.+.||+|.+|+++++++|++++++++..
T Consensus 154 ~AD~~l~~~~~~~~~~~---~---~~l~~~P~l~~~~~r~~~~P~~k~y~~~~~ 201 (205)
T PTZ00057 154 YADLAVFNLYDDIETKY---P---NSLKNFPLLKAHNEFISNLPNIKNYISNRK 201 (205)
T ss_pred HHHHHHHHHHHHHHHhC---h---hhhccChhHHHHHHHHHhChHHHHHHHhCC
Confidence 99999999888874321 1 124589999999999999999999986543
No 16
>PLN02817 glutathione dehydrogenase (ascorbate)
Probab=100.00 E-value=1.3e-31 Score=212.19 Aligned_cols=184 Identities=24% Similarity=0.381 Sum_probs=144.9
Q ss_pred cCChhhhHHHHHHHhhCCCeeEEEcCCCCChhHHHhhCCCCCcccEEEeCCeeeehhHHHHHHHHhhCCCCCCCCCCHHH
Q 027524 10 LLSPFNYRVVCALKLKGIPFELIKEDLSNKSALLLKYNPVHKKIPVLVHGGKPVCESMVILEYIEETWPQNPLMPSDPYD 89 (222)
Q Consensus 10 ~~s~~~~~v~~~l~~~gi~~~~~~v~~~~~~~~~~~~~p~~g~vP~L~~~g~~l~es~aI~~yL~~~~~~~~l~p~~~~~ 89 (222)
..||+|++++++|+++||||+.+.+++..++++|+++||. |+||+|+++|.+|+||.+|++||++++|++.+. ++.+
T Consensus 71 g~cp~s~rV~i~L~ekgi~ye~~~vdl~~~~~~fl~iNP~-GkVPvL~~d~~~L~ES~aI~~YL~e~~p~~~L~--~~~e 147 (265)
T PLN02817 71 GDCPFCQRVLLTLEEKHLPYDMKLVDLTNKPEWFLKISPE-GKVPVVKLDEKWVADSDVITQALEEKYPDPPLA--TPPE 147 (265)
T ss_pred CCCcHHHHHHHHHHHcCCCCEEEEeCcCcCCHHHHhhCCC-CCCCEEEECCEEEecHHHHHHHHHHHCCCCCCC--CHHH
Confidence 3499999999999999999999999998889999999998 999999999999999999999999999876663 5677
Q ss_pred HHHHHHHHHHHhhhcchhhhhhcCHHHHHHHHHHHHHHHHHHHhcccC-CCCccccCCCChhHHHHHHHHHHHHHHHH-h
Q 027524 90 RAQARFWINFAENKGAAVWKLFRSIEDQENTMKEILEMLQIVEEHGLG-EKKFFHGDKIGLVDIAFGSIVHWLQIIED-I 167 (222)
Q Consensus 90 ~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~e~~L~-~~~~l~G~~~s~AD~~l~~~l~~~~~~~~-~ 167 (222)
+++++.++.. .+..+.......+.....+.+.++.| |+.|+ +++|++|+++|+||+++++.+.++..... .
T Consensus 148 ra~i~~~l~~------~~~~~~~~~~~~~~~~~~l~~~l~~L-E~~L~~~g~yl~Gd~~SlADi~l~p~L~~l~~~~~~~ 220 (265)
T PLN02817 148 KASVGSKIFS------TFIGFLKSKDPGDGTEQALLDELTSF-DDYIKENGPFINGEKISAADLSLGPKLYHLEIALGHY 220 (265)
T ss_pred HHHHHHHHHH------HHHHHhccCCcchHHHHHHHHHHHHH-HHHHhcCCCeeCCCCCCHHHHHHHHHHHHHHHHHHHh
Confidence 8887665421 11111111111122345677889999 99886 47999999999999999999988754322 1
Q ss_pred hcccccCCCCCchHHHHHHHhcccchhhccCCChHHHH
Q 027524 168 VGVKLFESHKFPGLHAWLKNYKQVPVVEENLPSRDELL 205 (222)
Q Consensus 168 ~~~~~~~~~~~p~l~~w~~~~~~~p~~~~~~~~~~~~~ 205 (222)
.+.++ .+.+|+|.+|++++.++|+|++++...++..
T Consensus 221 ~~~~i--~~~~P~L~~w~~ri~~rps~~~~~~~~~~~~ 256 (265)
T PLN02817 221 KNWSV--PDSLPFVKSYMKNIFSMESFVKTRALPEDVI 256 (265)
T ss_pred cCCCc--cccCHHHHHHHHHHhcchhHhhcCCCHHHHH
Confidence 12222 3589999999999999999999998655543
No 17
>KOG0867 consensus Glutathione S-transferase [Posttranslational modification, protein turnover, chaperones]
Probab=99.97 E-value=8.7e-30 Score=197.99 Aligned_cols=191 Identities=28% Similarity=0.387 Sum_probs=162.8
Q ss_pred ceEEecccCChhhhHHHHHHHhhCCCeeEEEcCCC---CChhHHHhhCCCCCcccEEEeCCeeeehhHHHHHHHHhhCC-
Q 027524 3 EVKLHGGLLSPFNYRVVCALKLKGIPFELIKEDLS---NKSALLLKYNPVHKKIPVLVHGGKPVCESMVILEYIEETWP- 78 (222)
Q Consensus 3 ~~~L~~~~~s~~~~~v~~~l~~~gi~~~~~~v~~~---~~~~~~~~~~p~~g~vP~L~~~g~~l~es~aI~~yL~~~~~- 78 (222)
.|+||++..|+.++++.+++.++|++|+.+.++.. +.+++|+++||. |+||+|+++|..++||.||+.||.++|.
T Consensus 2 ~~~ly~~~~s~~~r~vl~~~~~~~l~~e~~~v~~~~ge~~~pefl~~nP~-~kVP~l~d~~~~l~eS~AI~~Yl~~ky~~ 80 (226)
T KOG0867|consen 2 KLKLYGHLGSPPARAVLIAAKELGLEVELKPVDLVKGEQKSPEFLKLNPL-GKVPALEDGGLTLWESHAILRYLAEKYGP 80 (226)
T ss_pred CceEeecCCCcchHHHHHHHHHcCCceeEEEeeccccccCCHHHHhcCcC-CCCCeEecCCeEEeeHHHHHHHHHHHcCC
Confidence 38999999999999999999999999999988765 899999999999 8999999999999999999999999996
Q ss_pred CCC-CCCCCHHHHHHHHHHHHHHhhhc-ch--hhh------hh--cCHHHHHHHHHHHHHHHHHHHhcccCCCCccccCC
Q 027524 79 QNP-LMPSDPYDRAQARFWINFAENKG-AA--VWK------LF--RSIEDQENTMKEILEMLQIVEEHGLGEKKFFHGDK 146 (222)
Q Consensus 79 ~~~-l~p~~~~~~a~~~~~~~~~~~~~-~~--~~~------~~--~~~~~~~~~~~~~~~~l~~l~e~~L~~~~~l~G~~ 146 (222)
.+. ++|.+..+|+.+++|+.+.++.+ +. ... +. .+.....+....+.+.++.+ |.+|.++.|+.|++
T Consensus 81 ~~~~l~p~~~~~ra~v~~~l~~~~~~l~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~-e~~l~~~~yl~g~~ 159 (226)
T KOG0867|consen 81 LGGILLPKDLKERAIVDQWLEFENGVLDPVTFERPILAPLLVGLPLNPTAVKELEAKLRKALDNL-ERFLKTQVYLAGDQ 159 (226)
T ss_pred CCcccCCcCHHHHHHHHHHHHhhhcccccccccceeeecceecccCcchhhHHHHHHHHHHHHHH-HHHHccCCcccCCc
Confidence 334 89999999999999998888773 32 221 11 14566788899999999999 99999999999999
Q ss_pred CChhHHHHHHHHHHHHHHHHhhcccccCCCCCchHHHHHHHhcccchhhccCC
Q 027524 147 IGLVDIAFGSIVHWLQIIEDIVGVKLFESHKFPGLHAWLKNYKQVPVVEENLP 199 (222)
Q Consensus 147 ~s~AD~~l~~~l~~~~~~~~~~~~~~~~~~~~p~l~~w~~~~~~~p~~~~~~~ 199 (222)
+|+||+.+.+.+..+.. ... +. .+..++|++.+|++++.++|++++...
T Consensus 160 ~tlADl~~~~~~~~~~~-~~~-~~--~~~~~~p~v~~W~~~~~~~P~~~e~~~ 208 (226)
T KOG0867|consen 160 LTLADLSLASTLSQFQG-KFA-TE--KDFEKYPKVARWYERIQKRPAYEEANE 208 (226)
T ss_pred ccHHHHHHhhHHHHHhH-hhh-hh--hhhhhChHHHHHHHHHHhCccHHHHHH
Confidence 99999999998888842 111 11 236799999999999999999887654
No 18
>PRK10387 glutaredoxin 2; Provisional
Probab=99.97 E-value=2.7e-30 Score=199.46 Aligned_cols=176 Identities=20% Similarity=0.227 Sum_probs=136.1
Q ss_pred eEEecccCChhhhHHHHHHHhhCCCeeEEEcCCCCChhHHHhhCCCCCcccEE-EeCCeeeehhHHHHHHHHhhCCCCCC
Q 027524 4 VKLHGGLLSPFNYRVVCALKLKGIPFELIKEDLSNKSALLLKYNPVHKKIPVL-VHGGKPVCESMVILEYIEETWPQNPL 82 (222)
Q Consensus 4 ~~L~~~~~s~~~~~v~~~l~~~gi~~~~~~v~~~~~~~~~~~~~p~~g~vP~L-~~~g~~l~es~aI~~yL~~~~~~~~l 82 (222)
|+||+++.||+|++++++|+++||||+.+.++...... ....||. |+||+| .++|..|+||.+|++||+++||++.+
T Consensus 1 ~~Ly~~~~sp~~~kv~~~L~~~gi~y~~~~~~~~~~~~-~~~~~p~-~~VPvL~~~~g~~l~eS~aI~~yL~~~~~~~~l 78 (210)
T PRK10387 1 MKLYIYDHCPFCVKARMIFGLKNIPVELIVLANDDEAT-PIRMIGQ-KQVPILQKDDGSYMPESLDIVHYIDELDGKPLL 78 (210)
T ss_pred CEEEeCCCCchHHHHHHHHHHcCCCeEEEEcCCCchhh-HHHhcCC-cccceEEecCCeEecCHHHHHHHHHHhCCCccC
Confidence 68999999999999999999999999999886553222 2678998 899999 47899999999999999999986544
Q ss_pred CCCCHHHHHHHHHHHHHHhhhc-chhh-hhh-------cCHH---------------------HHHHHHHHHHHHHHHHH
Q 027524 83 MPSDPYDRAQARFWINFAENKG-AAVW-KLF-------RSIE---------------------DQENTMKEILEMLQIVE 132 (222)
Q Consensus 83 ~p~~~~~~a~~~~~~~~~~~~~-~~~~-~~~-------~~~~---------------------~~~~~~~~~~~~l~~l~ 132 (222)
.+ .+++.++.|+.++.... ..+. .+. .... ..+...+.+.+.|+.+
T Consensus 79 ~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l- 154 (210)
T PRK10387 79 TG---KRSPAIEEWLRKVFGYLNKLLYPRFAKADLPEFATPSARQYFIDKKEASIGDFDALLAHTPGLIKEINADLRAL- 154 (210)
T ss_pred CC---cccHHHHHHHHHHHHHhhcchhcccccCCCcccCCHHHHHHHHHhHHhccCCHHHHHhcCHHHHHHHHHHHHHH-
Confidence 32 25778888887765441 1111 000 0000 0135677899999999
Q ss_pred hcccCCCCccccCCCChhHHHHHHHHHHHHHHHHhhcccccCCCCCchHHHHHHHhcccchh
Q 027524 133 EHGLGEKKFFHGDKIGLVDIAFGSIVHWLQIIEDIVGVKLFESHKFPGLHAWLKNYKQVPVV 194 (222)
Q Consensus 133 e~~L~~~~~l~G~~~s~AD~~l~~~l~~~~~~~~~~~~~~~~~~~~p~l~~w~~~~~~~p~~ 194 (222)
|++|++ +|++|+++|+||+++++.+.++.... + ++ .+|+|.+|++|+.++|.+
T Consensus 155 e~~L~~-~~l~G~~~s~ADi~l~~~l~~~~~~~---~---~~--~~p~l~~w~~r~~~r~~~ 207 (210)
T PRK10387 155 DPLIVK-PNAVNGELSTDDIHLFPILRNLTLVK---G---IE--WPPRVADYRDNMSKKTQV 207 (210)
T ss_pred HHHhcC-ccccCCCCCHHHHHHHHHHhcceeec---C---CC--CCHHHHHHHHHHHHHhCC
Confidence 999986 99999999999999999998885321 2 22 469999999999999876
No 19
>KOG1695 consensus Glutathione S-transferase [Posttranslational modification, protein turnover, chaperones]
Probab=99.96 E-value=2.2e-28 Score=184.58 Aligned_cols=192 Identities=20% Similarity=0.269 Sum_probs=156.3
Q ss_pred CcceEEecccCChhhhHHHHHHHhhCCCeeEEEcCCCCChhHHHhhCCCCCcccEEEeCCeeeehhHHHHHHHHhhCCCC
Q 027524 1 MAEVKLHGGLLSPFNYRVVCALKLKGIPFELIKEDLSNKSALLLKYNPVHKKIPVLVHGGKPVCESMVILEYIEETWPQN 80 (222)
Q Consensus 1 M~~~~L~~~~~s~~~~~v~~~l~~~gi~~~~~~v~~~~~~~~~~~~~p~~g~vP~L~~~g~~l~es~aI~~yL~~~~~~~ 80 (222)
|.+++|+||+..+++..+|++++++|++|+.+.++..+.-...+...|+ |++|+|..||..|.||.||++||+++++
T Consensus 1 m~~ykL~Yf~~RG~ae~iR~lf~~a~v~fEd~r~~~~~~w~~~K~~~pf-gqlP~l~vDg~~i~QS~AI~RyLArk~g-- 77 (206)
T KOG1695|consen 1 MPPYKLTYFNIRGLAEPIRLLFAYAGVSFEDKRITMEDAWEELKDKMPF-GQLPVLEVDGKKLVQSRAILRYLARKFG-- 77 (206)
T ss_pred CCceEEEecCcchhHHHHHHHHHhcCCCcceeeeccccchhhhcccCCC-CCCCEEeECCEeeccHHHHHHHHHHHhC--
Confidence 7789999999999999999999999999999999876533344555798 9999999999999999999999999998
Q ss_pred CCCCCCHHHHHHHHHHHHHHhhhcch-hhhhhc------CHHHHH-HHHHHHHHHHHHHHhcccC--CCCccccCCCChh
Q 027524 81 PLMPSDPYDRAQARFWINFAENKGAA-VWKLFR------SIEDQE-NTMKEILEMLQIVEEHGLG--EKKFFHGDKIGLV 150 (222)
Q Consensus 81 ~l~p~~~~~~a~~~~~~~~~~~~~~~-~~~~~~------~~~~~~-~~~~~~~~~l~~l~e~~L~--~~~~l~G~~~s~A 150 (222)
|.++++.+.+.++.+.+...+.+.. ++.... ..+..+ .......+.+..+ +..|. +++|++|+++|+|
T Consensus 78 -l~Gkt~~E~a~vD~i~d~~~D~~~~~~~~~~~~~~~g~~~~~~~~~~~Pa~~~~~~~~-~~~L~~~~sgflvGd~lT~a 155 (206)
T KOG1695|consen 78 -LAGKTEEEEAWVDMIVDQFKDFRWEIFRQPYTAPEAGKSEEELDKLYLPAKPKYFKIL-EKILKKNKSGFLVGDKLTWA 155 (206)
T ss_pred -cCCCCHHHHHHHHHHHHhhhhHHHHHHHHhhhhhhhccchhhhhhhhccchHHHHHHH-HHHHHhCCCCeeecCcccHH
Confidence 9999999999999998888777433 221111 111112 4556677788888 88886 5679999999999
Q ss_pred HHHHHHHHHHHHHHHHhhcccccCCCCCchHHHHHHHhcccchhhccCCChH
Q 027524 151 DIAFGSIVHWLQIIEDIVGVKLFESHKFPGLHAWLKNYKQVPVVEENLPSRD 202 (222)
Q Consensus 151 D~~l~~~l~~~~~~~~~~~~~~~~~~~~p~l~~w~~~~~~~p~~~~~~~~~~ 202 (222)
|+.++..+..+... ...+. ...+|+|+++.+++.++|.+++++.+..
T Consensus 156 Dl~i~e~l~~l~~~---~~~~~--~~~~P~L~a~~~kv~~~p~ik~~i~~r~ 202 (206)
T KOG1695|consen 156 DLVIAEHLDTLEEL---LDPSA--LDHFPKLKAFKERVSSIPNIKKYLESRP 202 (206)
T ss_pred HHHHHHHHHHHHHh---cCchh--hccChHHHHHHHHHhcCchHHHHHhcCC
Confidence 99999999988653 12333 3478999999999999999999887543
No 20
>TIGR02182 GRXB Glutaredoxin, GrxB family. This model includes the highly abundant E. coli GrxB (Grx2) glutaredoxin which is notably longer than either GrxA or GrxC. Unlike the other two E. coli glutaredoxins, GrxB appears to be unable to reduce ribonucleotide reductase, and may have more to do with resistance to redox stress.
Probab=99.95 E-value=1e-27 Score=184.80 Aligned_cols=174 Identities=19% Similarity=0.231 Sum_probs=131.0
Q ss_pred EEecccCChhhhHHHHHHHhhCCCeeEEEcCCCCChhHHHhhCCCCCcccEEE-eCCeeeehhHHHHHHHHhhCCCCCCC
Q 027524 5 KLHGGLLSPFNYRVVCALKLKGIPFELIKEDLSNKSALLLKYNPVHKKIPVLV-HGGKPVCESMVILEYIEETWPQNPLM 83 (222)
Q Consensus 5 ~L~~~~~s~~~~~v~~~l~~~gi~~~~~~v~~~~~~~~~~~~~p~~g~vP~L~-~~g~~l~es~aI~~yL~~~~~~~~l~ 83 (222)
+||++..||+|++|+++|+++|++|+.+.++.... ....+.||. |+||+|+ ++|..|+||.+|++||+++||.+.+.
T Consensus 1 ~Ly~~~~sp~~~kvr~~L~~~gl~~e~~~~~~~~~-~~~~~~np~-g~vP~l~~~~g~~l~es~~I~~yL~~~~~~~~~~ 78 (209)
T TIGR02182 1 KLYIYDHCPFCVRARMIFGLKNIPVEKHVLLNDDE-ETPIRMIGA-KQVPILQKDDGRAMPESLDIVAYFDKLDGEPLLT 78 (209)
T ss_pred CeecCCCCChHHHHHHHHHHcCCCeEEEECCCCcc-hhHHHhcCC-CCcceEEeeCCeEeccHHHHHHHHHHhCCCccCC
Confidence 68999999999999999999999999987755432 234789998 8999998 78999999999999999999764343
Q ss_pred CCCHHHHHHHHHHHHHHhhhc-----chhhh--------------hhcCHHH-----------HHHHHHHHHHHHHHHHh
Q 027524 84 PSDPYDRAQARFWINFAENKG-----AAVWK--------------LFRSIED-----------QENTMKEILEMLQIVEE 133 (222)
Q Consensus 84 p~~~~~~a~~~~~~~~~~~~~-----~~~~~--------------~~~~~~~-----------~~~~~~~~~~~l~~l~e 133 (222)
|. ++++++.|+.++...+ +.+.. +....+. .+.....+.+.|+.+ |
T Consensus 79 ~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~l~~l-e 154 (209)
T TIGR02182 79 GK---VSPEIEAWLRKVTGYANKLLLPRFAKSDLPEFATQSARKYFTDKKEASAGNFSALLNHTPGLLEEINADLEEL-D 154 (209)
T ss_pred CC---ChHHHHHHHHHHHHHhhhhhccccccCCCcccCCHHHHHHHHHHHHHhcCCHHHHHccCHHHHHHHHHHHHHH-H
Confidence 32 3566777776644431 11110 0000000 135667889999999 9
Q ss_pred cccCCCCccccCCCChhHHHHHHHHHHHHHHHHhhcccccCCCCCc-hHHHHHHHhcccchh
Q 027524 134 HGLGEKKFFHGDKIGLVDIAFGSIVHWLQIIEDIVGVKLFESHKFP-GLHAWLKNYKQVPVV 194 (222)
Q Consensus 134 ~~L~~~~~l~G~~~s~AD~~l~~~l~~~~~~~~~~~~~~~~~~~~p-~l~~w~~~~~~~p~~ 194 (222)
.+|++++|++| ++|+||+++++.+.++... + .+ .+| +|.+|++||++++++
T Consensus 155 ~~L~~~~~l~g-~~TiADi~l~~~l~~~~~~----~--~~---~~p~~l~~w~~Ri~ar~~~ 206 (209)
T TIGR02182 155 KLIDGPNAVNG-ELSEDDILVFPLLRNLTLV----A--GI---NWPSRVADYLDNMSKKSKV 206 (209)
T ss_pred HHHhCccccCC-CCCHHHHHHHHHhcCeeee----c--CC---CCChHHHHHHHHHHHHhCC
Confidence 99999999965 6999999999998887422 1 11 356 999999999998875
No 21
>KOG4420 consensus Uncharacterized conserved protein (Ganglioside-induced differentiation associated protein 1, GDAP1) [Function unknown]
Probab=99.91 E-value=5.4e-24 Score=161.20 Aligned_cols=200 Identities=20% Similarity=0.317 Sum_probs=144.0
Q ss_pred ceEEecccCChhhhHHHHHHHhhCCCeeEEEcCCC---CChhHHHhhCCCCCcccEEEeCCeeeehhHHHHHHHHhhCC-
Q 027524 3 EVKLHGGLLSPFNYRVVCALKLKGIPFELIKEDLS---NKSALLLKYNPVHKKIPVLVHGGKPVCESMVILEYIEETWP- 78 (222)
Q Consensus 3 ~~~L~~~~~s~~~~~v~~~l~~~gi~~~~~~v~~~---~~~~~~~~~~p~~g~vP~L~~~g~~l~es~aI~~yL~~~~~- 78 (222)
.+.||.+++|-.+++||++++++||+|+...|++. ..++||..+||. |.||||+++..+|.++.-|++|+++++-
T Consensus 26 ~~vLyhhpysf~sQkVrlvi~EK~id~~~y~V~l~~geh~epwFmrlNp~-gevPVl~~g~~II~d~tqIIdYvErtf~g 104 (325)
T KOG4420|consen 26 SLVLYHHPYSFSSQKVRLVIAEKGIDCEEYDVSLPQGEHKEPWFMRLNPG-GEVPVLIHGDNIISDYTQIIDYVERTFTG 104 (325)
T ss_pred cceeeecCcccccceeeeehhhcccccceeeccCccccccCchheecCCC-CCCceEecCCeecccHHHHHHHHHHhhcc
Confidence 37899999999999999999999999999999886 788999999998 9999999999999999999999999884
Q ss_pred CCCCCCC-CHHHHHHHHHHHHHHhhh--------------------cchhhhhh---------------cC---------
Q 027524 79 QNPLMPS-DPYDRAQARFWINFAENK--------------------GAAVWKLF---------------RS--------- 113 (222)
Q Consensus 79 ~~~l~p~-~~~~~a~~~~~~~~~~~~--------------------~~~~~~~~---------------~~--------- 113 (222)
+..|.|+ +..+..++.......+.. .|..+... .+
T Consensus 105 er~l~pe~~S~~~d~~l~~e~~l~~lpm~~~t~g~~lh~eL~~~s~iP~~~~iR~~~~k~~~~v~~l~~~e~pdla~ay~ 184 (325)
T KOG4420|consen 105 ERVLMPEVGSLQHDRVLQYEELLDALPMDAYTHGCILHPELTTDSMIPKYAEIRRHLAKATTDVMKLDHEEEPDLAEAYL 184 (325)
T ss_pred cccccccccccccHHHHHHHHHHHhcCcchhhccccccchhhccccCcccHHHHHHHHHHHHHHHHHHhhcCchhhHHHH
Confidence 4456664 222222222221111100 11111000 00
Q ss_pred ---------------HHHHHHHHHHHHHHHHHHHhcccCC----CCccccCCCChhHHHHHHHHHHHHHHHHhhcccccC
Q 027524 114 ---------------IEDQENTMKEILEMLQIVEEHGLGE----KKFFHGDKIGLVDIAFGSIVHWLQIIEDIVGVKLFE 174 (222)
Q Consensus 114 ---------------~~~~~~~~~~~~~~l~~l~e~~L~~----~~~l~G~~~s~AD~~l~~~l~~~~~~~~~~~~~~~~ 174 (222)
....+.....+...|+.. |.-|.+ ..||+|+.+|+||+.+.+.|+++..++-.. ....
T Consensus 185 akqkkl~~kl~~hdd~s~lkkild~l~~~Ld~V-EteLe~r~~~~~wL~G~efslADVsLg~~LhRL~~Lg~e~--~yw~ 261 (325)
T KOG4420|consen 185 AKQKKLMAKLLEHDDVSYLKKILDELAMVLDQV-ETELEKRKLCELWLCGCEFSLADVSLGATLHRLKFLGLEK--KYWE 261 (325)
T ss_pred HHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHH-HHHHhhccccceeeccccchHHHHHHHHHHHHHHHcccHH--Hhcc
Confidence 001122355556666667 666654 679999999999999999999997663211 1122
Q ss_pred CCCCchHHHHHHHhcccchhhccCCChHHHHH
Q 027524 175 SHKFPGLHAWLKNYKQVPVVEENLPSRDELLV 206 (222)
Q Consensus 175 ~~~~p~l~~w~~~~~~~p~~~~~~~~~~~~~~ 206 (222)
.+..|+|..|++|+..|+++++++...-.+.-
T Consensus 262 ~gsrpnle~Yf~rvrrR~sf~kvlg~~fnilr 293 (325)
T KOG4420|consen 262 DGSRPNLESYFERVRRRFSFRKVLGDIFNILR 293 (325)
T ss_pred cCCCccHHHHHHHHHhhhHHHHhhhhHHHHHH
Confidence 46899999999999999999999975555443
No 22
>KOG1422 consensus Intracellular Cl- channel CLIC, contains GST domain [Inorganic ion transport and metabolism]
Probab=99.91 E-value=7.2e-23 Score=150.93 Aligned_cols=191 Identities=26% Similarity=0.395 Sum_probs=156.2
Q ss_pred CChhhhHHHHHHHhhCCCeeEEEcCCCCChhHHHhhCCCCCcccEEEeCCeeeehhHHHHHHHHhhCCCCCCCCCCHHHH
Q 027524 11 LSPFNYRVVCALKLKGIPFELIKEDLSNKSALLLKYNPVHKKIPVLVHGGKPVCESMVILEYIEETWPQNPLMPSDPYDR 90 (222)
Q Consensus 11 ~s~~~~~v~~~l~~~gi~~~~~~v~~~~~~~~~~~~~p~~g~vP~L~~~g~~l~es~aI~~yL~~~~~~~~l~p~~~~~~ 90 (222)
.||+||++.+.|..+|++|.++.||+..++++|+.+.|. |++|+|..|+..++||..|.++|++.+|.+++---++.|.
T Consensus 20 dcpf~qr~~m~L~~k~~~f~vttVd~~~kp~~f~~~sp~-~~~P~l~~d~~~~tDs~~Ie~~Lee~l~~p~~~~~~~~E~ 98 (221)
T KOG1422|consen 20 DCPFCQRLFMTLELKGVPFKVTTVDLSRKPEWFLDISPG-GKPPVLKFDEKWVTDSDKIEEFLEEKLPPPKLPTLAPPES 98 (221)
T ss_pred CChhHHHHHHHHHHcCCCceEEEeecCCCcHHHHhhCCC-CCCCeEEeCCceeccHHHHHHHHHHhcCCCCCcccCCHHH
Confidence 599999999999999999999999999999999999998 9999999999999999999999999998765322222222
Q ss_pred HHHHHHHHHHhhhcchhhhhh-cCHH-HHHHHHHHHHHHHHHHHhcccCC---CCccccCCCChhHHHHHHHHHHHHHHH
Q 027524 91 AQARFWINFAENKGAAVWKLF-RSIE-DQENTMKEILEMLQIVEEHGLGE---KKFFHGDKIGLVDIAFGSIVHWLQIIE 165 (222)
Q Consensus 91 a~~~~~~~~~~~~~~~~~~~~-~~~~-~~~~~~~~~~~~l~~l~e~~L~~---~~~l~G~~~s~AD~~l~~~l~~~~~~~ 165 (222)
+ +...+.+..+..|. .+.+ ..+.....+...|..| |.+|+. ++|+.|+++|+||+.++|-|+-++...
T Consensus 99 a------sag~diF~kF~~fi~ksk~~~n~~~e~~Ll~~L~~L-d~yL~sp~~~~Fl~Gd~lt~aDcsLlPKL~~i~va~ 171 (221)
T KOG1422|consen 99 A------SAGSDIFAKFSAFIKKSKDAANDGLEKALLKELEKL-DDYLKSPSRRKFLDGDKLTLADCSLLPKLHHIKVAA 171 (221)
T ss_pred H------hhHHHHHHHHHHHHhCchhhccchHHHHHHHHHHHH-HHHhcCccCCccccCCeeeeehhhhchhHHHHHHHH
Confidence 2 23444456665553 3333 4455677788888999 999974 799999999999999999999997654
Q ss_pred Hh-hcccccCCCCCchHHHHHHHhcccchhhccCCChHHHHHHHHHH
Q 027524 166 DI-VGVKLFESHKFPGLHAWLKNYKQVPVVEENLPSRDELLVFFKGR 211 (222)
Q Consensus 166 ~~-~~~~~~~~~~~p~l~~w~~~~~~~p~~~~~~~~~~~~~~~~~~~ 211 (222)
.+ .+.++ .+.++++++|+..+.++.+|.++.+.+.++.......
T Consensus 172 k~yk~~~I--P~~lt~V~rYl~~~ya~d~F~~tcp~d~ei~~~y~~~ 216 (221)
T KOG1422|consen 172 KHYKNFEI--PASLTGVWRYLKNAYARDEFTNTCPADQEIILAYAPV 216 (221)
T ss_pred HHhcCCCC--chhhhHHHHHHHHHHhHHHhhcCCchHHHHHHhhhhh
Confidence 43 45555 5699999999999999999999999988877665543
No 23
>PLN02907 glutamate-tRNA ligase
Probab=99.91 E-value=3.1e-23 Score=183.00 Aligned_cols=158 Identities=22% Similarity=0.303 Sum_probs=130.8
Q ss_pred CcceEEecccCChhhhHHHHHHHhhCCCeeEEEcCCCCChhHHHhhCCCCCcccEEEe-CCeeeehhHHHHHHHHhhCCC
Q 027524 1 MAEVKLHGGLLSPFNYRVVCALKLKGIPFELIKEDLSNKSALLLKYNPVHKKIPVLVH-GGKPVCESMVILEYIEETWPQ 79 (222)
Q Consensus 1 M~~~~L~~~~~s~~~~~v~~~l~~~gi~~~~~~v~~~~~~~~~~~~~p~~g~vP~L~~-~g~~l~es~aI~~yL~~~~~~ 79 (222)
|+ ++||+.+.|+ +.++.++|++.|++|+.+.. +|. |+||+|+. +|..|+||.||++||++.++.
T Consensus 1 ~~-~kLy~~~~S~-~~~v~~~L~~lgv~~e~~~~------------~p~-GkVPvLv~ddG~~L~ES~AIl~YLa~~~p~ 65 (722)
T PLN02907 1 ME-AKLSFPPDSP-PLAVIAAAKVAGVPLTIDPS------------LKS-GSAPTLLFSSGEKLTGTNVLLRYIARSASL 65 (722)
T ss_pred Ce-EEEEECCCCC-hHHHHHHHHHcCCCcEEeec------------CCC-CCCcEEEECCCCEEECHHHHHHHHHHhCCC
Confidence 77 8999988774 77899999999999999752 577 89999995 889999999999999999987
Q ss_pred CCCCCCCHHHHHHHHHHHHHHhhhcchhhhhhcCHHHHHHHHHHHHHHHHHHHhcccCCCCccccCCCChhHHHHHHHHH
Q 027524 80 NPLMPSDPYDRAQARFWINFAENKGAAVWKLFRSIEDQENTMKEILEMLQIVEEHGLGEKKFFHGDKIGLVDIAFGSIVH 159 (222)
Q Consensus 80 ~~l~p~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~e~~L~~~~~l~G~~~s~AD~~l~~~l~ 159 (222)
..|+|.++.+++++++|+.++..... . ..+...++.| |.+|+.++||+|+++|+||+++++.+.
T Consensus 66 ~~L~p~d~~erAqV~qWL~~~~~~~~--------~-------~~l~~~L~~L-E~~L~~rtYLvGd~lTLADIaL~~~L~ 129 (722)
T PLN02907 66 PGFYGQDAFESSQVDEWLDYAPTFSS--------G-------SEFENACEYV-DGYLASRTFLVGYSLTIADIAIWSGLA 129 (722)
T ss_pred cCCCCCCHHHHHHHHHHHHHHhhccc--------H-------HHHHHHHHHH-HHHhccCCeecCCCCCHHHHHHHHHHH
Confidence 78999999999999999998754211 1 1356678999 999999999999999999999999876
Q ss_pred HHHHHHHhhcccccCCCCCchHHHHHHHhcccch
Q 027524 160 WLQIIEDIVGVKLFESHKFPGLHAWLKNYKQVPV 193 (222)
Q Consensus 160 ~~~~~~~~~~~~~~~~~~~p~l~~w~~~~~~~p~ 193 (222)
...... .+... .+.||+|.+|++++.++|+
T Consensus 130 ~~~~~~--~~~~~--~~~yPnL~RW~erI~arPs 159 (722)
T PLN02907 130 GSGQRW--ESLRK--SKKYQNLVRWFNSISAEYS 159 (722)
T ss_pred hhhhhh--hcccc--cccCHHHHHHHHHHHhCCC
Confidence 552110 02112 4589999999999999999
No 24
>PF13417 GST_N_3: Glutathione S-transferase, N-terminal domain; PDB: 3ERG_B 3IBH_A 3ERF_A 3UBL_A 3UBK_A 3IR4_A 3M8N_B 2R4V_A 2PER_A 2R5G_A ....
Probab=99.84 E-value=1.1e-20 Score=122.02 Aligned_cols=74 Identities=43% Similarity=0.672 Sum_probs=70.8
Q ss_pred EecccCChhhhHHHHHHHhhCCCeeEEEcCCCCChhHHHhhCCCCCcccEEEeCCeeeehhHHHHHHHHhhCCCC
Q 027524 6 LHGGLLSPFNYRVVCALKLKGIPFELIKEDLSNKSALLLKYNPVHKKIPVLVHGGKPVCESMVILEYIEETWPQN 80 (222)
Q Consensus 6 L~~~~~s~~~~~v~~~l~~~gi~~~~~~v~~~~~~~~~~~~~p~~g~vP~L~~~g~~l~es~aI~~yL~~~~~~~ 80 (222)
||++++||||++++++|+++||+|+.+.++...+.+++.+.||. |+||+|++||.+|+||.+|++||+++++++
T Consensus 1 Ly~~~~Sp~~~kv~~~l~~~~i~~~~~~v~~~~~~~~~~~~~p~-~~vPvL~~~g~~l~dS~~I~~yL~~~~~~~ 74 (75)
T PF13417_consen 1 LYGFPGSPYSQKVRLALEEKGIPYELVPVDPEEKRPEFLKLNPK-GKVPVLVDDGEVLTDSAAIIEYLEERYPGP 74 (75)
T ss_dssp EEEETTSHHHHHHHHHHHHHTEEEEEEEEBTTSTSHHHHHHSTT-SBSSEEEETTEEEESHHHHHHHHHHHSTSS
T ss_pred CCCcCCChHHHHHHHHHHHcCCeEEEeccCcccchhHHHhhccc-ccceEEEECCEEEeCHHHHHHHHHHHcCCC
Confidence 89999999999999999999999999999988888999999998 899999999999999999999999999864
No 25
>cd03059 GST_N_SspA GST_N family, Stringent starvation protein A (SspA) subfamily; SspA is a RNA polymerase (RNAP)-associated protein required for the lytic development of phage P1 and for stationary phase-induced acid tolerance of E. coli. It is implicated in survival during nutrient starvation. SspA adopts the GST fold with an N-terminal TRX-fold domain and a C-terminal alpha helical domain, but it does not bind glutathione (GSH) and lacks GST activity. SspA is highly conserved among gram-negative bacteria. Related proteins found in Neisseria (called RegF), Francisella and Vibrio regulate the expression of virulence factors necessary for pathogenesis.
Probab=99.82 E-value=1e-19 Score=116.80 Aligned_cols=73 Identities=32% Similarity=0.474 Sum_probs=69.2
Q ss_pred eEEecccCChhhhHHHHHHHhhCCCeeEEEcCCCCChhHHHhhCCCCCcccEEEeCCeeeehhHHHHHHHHhhC
Q 027524 4 VKLHGGLLSPFNYRVVCALKLKGIPFELIKEDLSNKSALLLKYNPVHKKIPVLVHGGKPVCESMVILEYIEETW 77 (222)
Q Consensus 4 ~~L~~~~~s~~~~~v~~~l~~~gi~~~~~~v~~~~~~~~~~~~~p~~g~vP~L~~~g~~l~es~aI~~yL~~~~ 77 (222)
|+||+.+.||+|++++++|+++|++|+.+.++..+..+++++.||. |++|+|+++|..++||.+|++||++++
T Consensus 1 ~~ly~~~~~~~~~~v~~~l~~~gi~~~~~~v~~~~~~~~~~~~~p~-~~vP~l~~~~~~l~es~aI~~yL~~~~ 73 (73)
T cd03059 1 MTLYSGPDDVYSHRVRIVLAEKGVSVEIIDVDPDNPPEDLAELNPY-GTVPTLVDRDLVLYESRIIMEYLDERF 73 (73)
T ss_pred CEEEECCCChhHHHHHHHHHHcCCccEEEEcCCCCCCHHHHhhCCC-CCCCEEEECCEEEEcHHHHHHHHHhhC
Confidence 6899999999999999999999999999999988888999999998 899999999999999999999999864
No 26
>cd03052 GST_N_GDAP1 GST_N family, Ganglioside-induced differentiation-associated protein 1 (GDAP1) subfamily; GDAP1 was originally identified as a highly expressed gene at the differentiated stage of GD3 synthase-transfected cells. More recently, mutations in GDAP1 have been reported to cause both axonal and demyelinating autosomal-recessive Charcot-Marie-Tooth (CMT) type 4A neuropathy. CMT is characterized by slow and progressive weakness and atrophy of muscles. Sequence analysis of GDAP1 shows similarities and differences with GSTs; it appears to contain both N-terminal TRX-fold and C-terminal alpha helical domains of GSTs, however, it also contains additional C-terminal transmembrane domains unlike GSTs. GDAP1 is mainly expressed in neuronal cells and is localized in the mitochondria through its transmembrane domains. It does not exhibit GST activity using standard substrates.
Probab=99.81 E-value=1.3e-19 Score=116.06 Aligned_cols=70 Identities=26% Similarity=0.465 Sum_probs=65.1
Q ss_pred eEEecccCChhhhHHHHHHHhhCCCeeEEEcCCC---CChhHHHhhCCCCCcccEEEeCCeeeehhHHHHHHHH
Q 027524 4 VKLHGGLLSPFNYRVVCALKLKGIPFELIKEDLS---NKSALLLKYNPVHKKIPVLVHGGKPVCESMVILEYIE 74 (222)
Q Consensus 4 ~~L~~~~~s~~~~~v~~~l~~~gi~~~~~~v~~~---~~~~~~~~~~p~~g~vP~L~~~g~~l~es~aI~~yL~ 74 (222)
.+||+++.|++|++++++|+++|++|+.+.++.. .+.++|+++||. |+||+|++||.+|+||.+|++||+
T Consensus 1 ~~ly~~~~s~~s~rv~~~L~e~gl~~e~~~v~~~~~~~~~~~~~~inP~-g~vP~L~~~g~~l~Es~aI~~yLe 73 (73)
T cd03052 1 LVLYHWTQSFSSQKVRLVIAEKGLRCEEYDVSLPLSEHNEPWFMRLNPT-GEVPVLIHGDNIICDPTQIIDYLE 73 (73)
T ss_pred CEEecCCCCccHHHHHHHHHHcCCCCEEEEecCCcCccCCHHHHHhCcC-CCCCEEEECCEEEEcHHHHHHHhC
Confidence 4799999999999999999999999999998874 567889999998 899999999999999999999985
No 27
>cd03061 GST_N_CLIC GST_N family, Chloride Intracellular Channel (CLIC) subfamily; composed of CLIC1-5, p64, parchorin and similar proteins. They are auto-inserting, self-assembling intracellular anion channels involved in a wide variety of functions including regulated secretion, cell division and apoptosis. They can exist in both water-soluble and membrane-bound states, and are found in various vesicles and membranes. Biochemical studies of the C. elegans homolog, EXC-4, show that the membrane localization domain is present in the N-terminal part of the protein. The structure of soluble human CLIC1 reveals that it is monomeric and it adopts a fold similar to GSTs, containing an N-terminal domain with a TRX fold and a C-terminal alpha helical domain. Upon oxidation, the N-terminal domain of CLIC1 undergoes a structural change to form a non-covalent dimer stabilized by the formation of an intramolecular disulfide bond between two cysteines that are far apart in the reduced form. The CLI
Probab=99.80 E-value=2.4e-19 Score=118.38 Aligned_cols=70 Identities=29% Similarity=0.373 Sum_probs=66.3
Q ss_pred cCChhhhHHHHHHHhhCCCeeEEEcCCCCChhHHHhhCCCCCcccEEEeCCeeeehhHHHHHHHHhhCCCC
Q 027524 10 LLSPFNYRVVCALKLKGIPFELIKEDLSNKSALLLKYNPVHKKIPVLVHGGKPVCESMVILEYIEETWPQN 80 (222)
Q Consensus 10 ~~s~~~~~v~~~l~~~gi~~~~~~v~~~~~~~~~~~~~p~~g~vP~L~~~g~~l~es~aI~~yL~~~~~~~ 80 (222)
..||||+++|++|+++||+|+.+.+++.+++++|+++||. |+||+|.++|.+|+||.+|++||+++++.+
T Consensus 20 g~cpf~~rvrl~L~eKgi~ye~~~vd~~~~p~~~~~~nP~-g~vPvL~~~~~~i~eS~~I~eYLde~~~~~ 89 (91)
T cd03061 20 GNCPFCQRLFMVLWLKGVVFNVTTVDMKRKPEDLKDLAPG-TQPPFLLYNGEVKTDNNKIEEFLEETLCPP 89 (91)
T ss_pred CCChhHHHHHHHHHHCCCceEEEEeCCCCCCHHHHHhCCC-CCCCEEEECCEEecCHHHHHHHHHHHccCC
Confidence 4699999999999999999999999999889999999998 999999999999999999999999998643
No 28
>cd03058 GST_N_Tau GST_N family, Class Tau subfamily; GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. The plant-specific class Tau GST subfamily has undergone extensive gene duplication. The Arabidopsis and Oryza genomes contain 28 and 40 Tau GSTs, respectively. They are primarily responsible for herbicide detoxification together with class Phi GSTs, showing class specificity in substrate preference. Tau enzymes are highly efficient in detoxifying diphenylether and aryloxyphenoxypropionate herbicides. In addition, Tau GSTs play important roles in intracellular signalling, biosynthesis of anthocyanin,
Probab=99.80 E-value=2.7e-19 Score=115.22 Aligned_cols=74 Identities=65% Similarity=1.120 Sum_probs=68.6
Q ss_pred eEEecccCChhhhHHHHHHHhhCCCeeEEEcCCCCChhHHHhhCCCCCcccEEEeCCeeeehhHHHHHHHHhhC
Q 027524 4 VKLHGGLLSPFNYRVVCALKLKGIPFELIKEDLSNKSALLLKYNPVHKKIPVLVHGGKPVCESMVILEYIEETW 77 (222)
Q Consensus 4 ~~L~~~~~s~~~~~v~~~l~~~gi~~~~~~v~~~~~~~~~~~~~p~~g~vP~L~~~g~~l~es~aI~~yL~~~~ 77 (222)
|+||+++.||+|++++++|+++|++|+.+.++...+.+++++.||.+|++|+|+++|.+++||.+|++||++++
T Consensus 1 ~~Ly~~~~sp~~~~v~~~l~~~gl~~~~~~~~~~~~~~~~~~~~p~~~~vP~l~~~~~~l~eS~aI~~yL~~~~ 74 (74)
T cd03058 1 VKLLGAWASPFVLRVRIALALKGVPYEYVEEDLGNKSELLLASNPVHKKIPVLLHNGKPICESLIIVEYIDEAW 74 (74)
T ss_pred CEEEECCCCchHHHHHHHHHHcCCCCEEEEeCcccCCHHHHHhCCCCCCCCEEEECCEEeehHHHHHHHHHhhC
Confidence 68999999999999999999999999999998877788999999943899999999999999999999999863
No 29
>cd03041 GST_N_2GST_N GST_N family, 2 repeats of the N-terminal domain of soluble GSTs (2 GST_N) subfamily; composed of uncharacterized proteins. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins, and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains.
Probab=99.80 E-value=3.9e-19 Score=115.26 Aligned_cols=73 Identities=25% Similarity=0.200 Sum_probs=66.2
Q ss_pred eEEecccCChhhhHHHHHHHhhCCCeeEEEcCCC-CChhHHHhhCCCCCcccEEEe--CCeeeehhHHHHHHHHhhC
Q 027524 4 VKLHGGLLSPFNYRVVCALKLKGIPFELIKEDLS-NKSALLLKYNPVHKKIPVLVH--GGKPVCESMVILEYIEETW 77 (222)
Q Consensus 4 ~~L~~~~~s~~~~~v~~~l~~~gi~~~~~~v~~~-~~~~~~~~~~p~~g~vP~L~~--~g~~l~es~aI~~yL~~~~ 77 (222)
++||+++.||+|++++++|+++||||+.+.++.. ...+++++.||. |+||+|++ +|..++||.+|++||++++
T Consensus 2 ~~Ly~~~~sp~~~kv~~~L~~~gi~y~~~~v~~~~~~~~~~~~~~p~-~~vP~l~~~~~~~~l~es~~I~~yL~~~~ 77 (77)
T cd03041 2 LELYEFEGSPFCRLVREVLTELELDVILYPCPKGSPKRDKFLEKGGK-VQVPYLVDPNTGVQMFESADIVKYLFKTY 77 (77)
T ss_pred ceEecCCCCchHHHHHHHHHHcCCcEEEEECCCChHHHHHHHHhCCC-CcccEEEeCCCCeEEEcHHHHHHHHHHhC
Confidence 7999999999999999999999999999988754 356789999998 89999997 4789999999999999874
No 30
>cd03076 GST_N_Pi GST_N family, Class Pi subfamily; GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. Class Pi GST is a homodimeric eukaryotic protein. The human GSTP1 is mainly found in erythrocytes, kidney, placenta and fetal liver. It is involved in stress responses and in cellular proliferation pathways as an inhibitor of JNK (c-Jun N-terminal kinase). Following oxidative stress, monomeric GSTP1 dissociates from JNK and dimerizes, losing its ability to bind JNK and causing an increase in JNK activity, thereby promoting apoptosis. GSTP1 is expressed in various tumors and is the predominant GST in a w
Probab=99.79 E-value=2e-19 Score=115.41 Aligned_cols=73 Identities=15% Similarity=0.075 Sum_probs=67.2
Q ss_pred ceEEecccCChhhhHHHHHHHhhCCCeeEEEcCCCCChhHHHhhCCCCCcccEEEeCCeeeehhHHHHHHHHhh
Q 027524 3 EVKLHGGLLSPFNYRVVCALKLKGIPFELIKEDLSNKSALLLKYNPVHKKIPVLVHGGKPVCESMVILEYIEET 76 (222)
Q Consensus 3 ~~~L~~~~~s~~~~~v~~~l~~~gi~~~~~~v~~~~~~~~~~~~~p~~g~vP~L~~~g~~l~es~aI~~yL~~~ 76 (222)
+++||+++.|++|++++++|+++|++|+.+.++.....++++..||. |++|+|+++|.+|+||.||++||+++
T Consensus 1 ~~~Ly~~~~~~~~~~v~~~L~~~~i~~e~~~v~~~~~~~~~~~~~p~-~~vP~l~~~~~~l~es~aI~~yL~~~ 73 (73)
T cd03076 1 PYTLTYFPVRGRAEAIRLLLADQGISWEEERVTYEEWQESLKPKMLF-GQLPCFKDGDLTLVQSNAILRHLGRK 73 (73)
T ss_pred CcEEEEeCCcchHHHHHHHHHHcCCCCEEEEecHHHhhhhhhccCCC-CCCCEEEECCEEEEcHHHHHHHHhcC
Confidence 47999999999999999999999999999999876556688999998 89999999999999999999999863
No 31
>cd03045 GST_N_Delta_Epsilon GST_N family, Class Delta and Epsilon subfamily; GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. The class Delta and Epsilon subfamily is made up primarily of insect GSTs, which play major roles in insecticide resistance by facilitating reductive dehydrochlorination of insecticides or conjugating them with GSH to produce water-soluble metabolites that are easily excreted. They are also implicated in protection against cellular damage by oxidative stress.
Probab=99.79 E-value=5.6e-19 Score=113.71 Aligned_cols=71 Identities=31% Similarity=0.343 Sum_probs=65.9
Q ss_pred eEEecccCChhhhHHHHHHHhhCCCeeEEEcCCC---CChhHHHhhCCCCCcccEEEeCCeeeehhHHHHHHHHh
Q 027524 4 VKLHGGLLSPFNYRVVCALKLKGIPFELIKEDLS---NKSALLLKYNPVHKKIPVLVHGGKPVCESMVILEYIEE 75 (222)
Q Consensus 4 ~~L~~~~~s~~~~~v~~~l~~~gi~~~~~~v~~~---~~~~~~~~~~p~~g~vP~L~~~g~~l~es~aI~~yL~~ 75 (222)
|+||+++.||+|++++++|+++|++|+.+.++.. ...+++++.||. |+||+|+++|..|+||.||++||++
T Consensus 1 ~~Ly~~~~~~~~~~v~~~l~~~gi~~e~~~i~~~~~~~~~~~~~~~~p~-~~vP~l~~~~~~l~es~aI~~yL~~ 74 (74)
T cd03045 1 IDLYYLPGSPPCRAVLLTAKALGLELNLKEVNLMKGEHLKPEFLKLNPQ-HTVPTLVDNGFVLWESHAILIYLVE 74 (74)
T ss_pred CEEEeCCCCCcHHHHHHHHHHcCCCCEEEEecCccCCcCCHHHHhhCcC-CCCCEEEECCEEEEcHHHHHHHHhC
Confidence 6899999999999999999999999999999864 356899999999 8999999999999999999999974
No 32
>cd03060 GST_N_Omega_like GST_N family, Omega-like subfamily; composed of uncharacterized proteins with similarity to class Omega GSTs. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. Class Omega GSTs show little or no GSH-conjugating activity towards standard GST substrates. Instead, they catalyze the GSH dependent reduction of protein disulfides, dehydroascorbate and monomethylarsonate, activities which are more characteristic of glutaredoxins. Like Omega enzymes, proteins in this subfamily contain a conserved cysteine equivalent to the first cysteine in the CXXC motif of glutaredoxins, which is a r
Probab=99.78 E-value=1e-18 Score=111.50 Aligned_cols=69 Identities=35% Similarity=0.441 Sum_probs=64.8
Q ss_pred eEEecccCChhhhHHHHHHHhhCCCeeEEEcCCCCChhHHHhhCCCCCcccEEEe-CCeeeehhHHHHHHH
Q 027524 4 VKLHGGLLSPFNYRVVCALKLKGIPFELIKEDLSNKSALLLKYNPVHKKIPVLVH-GGKPVCESMVILEYI 73 (222)
Q Consensus 4 ~~L~~~~~s~~~~~v~~~l~~~gi~~~~~~v~~~~~~~~~~~~~p~~g~vP~L~~-~g~~l~es~aI~~yL 73 (222)
.+||++++||||++++++|+++|++|+.+.++...+.+++++.||. |+||+|++ ||..|+||.+|++|+
T Consensus 1 ~~ly~~~~~p~~~rv~~~L~~~gl~~e~~~v~~~~~~~~~~~~np~-~~vP~L~~~~g~~l~eS~aI~~y~ 70 (71)
T cd03060 1 PILYSFRRCPYAMRARMALLLAGITVELREVELKNKPAEMLAASPK-GTVPVLVLGNGTVIEESLDIMRWA 70 (71)
T ss_pred CEEEecCCCcHHHHHHHHHHHcCCCcEEEEeCCCCCCHHHHHHCCC-CCCCEEEECCCcEEecHHHHHHhh
Confidence 3799999999999999999999999999999988778899999998 89999998 599999999999996
No 33
>cd03050 GST_N_Theta GST_N family, Class Theta subfamily; composed of eukaryotic class Theta GSTs and bacterial dichloromethane (DCM) dehalogenase. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. Mammalian class Theta GSTs show poor GSH conjugating activity towards the standard substrates, CDNB and ethacrynic acid, differentiating them from other mammalian GSTs. GSTT1-1 shows similar cataytic activity as bacterial DCM dehalogenase, catalyzing the GSH-dependent hydrolytic dehalogenation of dihalomethanes. This is an essential process in methylotrophic bacteria to enable them to use chloromethane and DC
Probab=99.78 E-value=1.5e-18 Score=112.34 Aligned_cols=73 Identities=36% Similarity=0.490 Sum_probs=66.9
Q ss_pred eEEecccCChhhhHHHHHHHhhCCCeeEEEcCCC---CChhHHHhhCCCCCcccEEEeCCeeeehhHHHHHHHHhhC
Q 027524 4 VKLHGGLLSPFNYRVVCALKLKGIPFELIKEDLS---NKSALLLKYNPVHKKIPVLVHGGKPVCESMVILEYIEETW 77 (222)
Q Consensus 4 ~~L~~~~~s~~~~~v~~~l~~~gi~~~~~~v~~~---~~~~~~~~~~p~~g~vP~L~~~g~~l~es~aI~~yL~~~~ 77 (222)
++||+++.|++|++++++|+++|++|+.+.++.. ...+++.+.||. |++|+|+++|.+|+||.||++||++++
T Consensus 1 ~~ly~~~~s~~~~~v~~~l~~~g~~~~~~~v~~~~~~~~~~~~~~~~p~-~~vP~L~~~~~~l~eS~aI~~Yl~~~~ 76 (76)
T cd03050 1 LKLYYDLMSQPSRAVYIFLKLNKIPFEECPIDLRKGEQLTPEFKKINPF-GKVPAIVDGDFTLAESVAILRYLARKF 76 (76)
T ss_pred CEEeeCCCChhHHHHHHHHHHcCCCcEEEEecCCCCCcCCHHHHHhCcC-CCCCEEEECCEEEEcHHHHHHHHHhhC
Confidence 5799999999999999999999999999999865 345789999998 999999999999999999999999864
No 34
>cd03053 GST_N_Phi GST_N family, Class Phi subfamily; composed of plant-specific class Phi GSTs and related fungal and bacterial proteins. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. The class Phi GST subfamily has experience extensive gene duplication. The Arabidopsis and Oryza genomes contain 13 and 16 Phi GSTs, respectively. They are primarily responsible for herbicide detoxification together with class Tau GSTs, showing class specificity in substrate preference. Phi enzymes are highly reactive toward chloroacetanilide and thiocarbamate herbicides. Some Phi GSTs have other functions including t
Probab=99.78 E-value=1.5e-18 Score=112.32 Aligned_cols=72 Identities=38% Similarity=0.541 Sum_probs=66.7
Q ss_pred eEEecccCChhhhHHHHHHHhhCCCeeEEEcCCC---CChhHHHhhCCCCCcccEEEeCCeeeehhHHHHHHHHhh
Q 027524 4 VKLHGGLLSPFNYRVVCALKLKGIPFELIKEDLS---NKSALLLKYNPVHKKIPVLVHGGKPVCESMVILEYIEET 76 (222)
Q Consensus 4 ~~L~~~~~s~~~~~v~~~l~~~gi~~~~~~v~~~---~~~~~~~~~~p~~g~vP~L~~~g~~l~es~aI~~yL~~~ 76 (222)
++||+++.||+|++++++|+++|++|+.+.++.. ...++|.+.||. |++|+|+++|..|+||.||++||+++
T Consensus 2 ~~Ly~~~~s~~s~~v~~~l~~~~i~~~~~~~~~~~~~~~~~~~~~~~P~-~~vP~l~~~g~~l~es~aI~~yL~~~ 76 (76)
T cd03053 2 LKLYGAAMSTCVRRVLLCLEEKGVDYELVPVDLTKGEHKSPEHLARNPF-GQIPALEDGDLKLFESRAITRYLAEK 76 (76)
T ss_pred eEEEeCCCChhHHHHHHHHHHcCCCcEEEEeCccccccCCHHHHhhCCC-CCCCEEEECCEEEEcHHHHHHHHhhC
Confidence 7999999999999999999999999999988764 456889999998 89999999999999999999999863
No 35
>KOG3029 consensus Glutathione S-transferase-related protein [General function prediction only]
Probab=99.77 E-value=1.3e-17 Score=128.06 Aligned_cols=179 Identities=17% Similarity=0.356 Sum_probs=121.3
Q ss_pred ceEEecccCChhhhHHHHHHHhhCCCeeEEEcCCCCChhHHHhhCCCCCcccEEEeCCeeeehhHHHHHHHH--------
Q 027524 3 EVKLHGGLLSPFNYRVVCALKLKGIPFELIKEDLSNKSALLLKYNPVHKKIPVLVHGGKPVCESMVILEYIE-------- 74 (222)
Q Consensus 3 ~~~L~~~~~s~~~~~v~~~l~~~gi~~~~~~v~~~~~~~~~~~~~p~~g~vP~L~~~g~~l~es~aI~~yL~-------- 74 (222)
+++||.+-.||||.+||.+|.+.||||++++|++-.+.+ .+.+. +.+||+|..+|..+.||.+|+.-|+
T Consensus 90 ~l~LyQyetCPFCcKVrAFLDyhgisY~VVEVnpV~r~e--Ik~Ss-ykKVPil~~~Geqm~dSsvIIs~laTyLq~~~q 166 (370)
T KOG3029|consen 90 DLVLYQYETCPFCCKVRAFLDYHGISYAVVEVNPVLRQE--IKWSS-YKKVPILLIRGEQMVDSSVIISLLATYLQDKRQ 166 (370)
T ss_pred eEEEEeeccCchHHHHHHHHhhcCCceEEEEecchhhhh--ccccc-cccccEEEeccceechhHHHHHHHHHHhccCCC
Confidence 578999999999999999999999999999998753222 23344 3899999998888999999997663
Q ss_pred ------hhCCCCCCCCC-----------------------CHHHHHHHHHHHHHHhhhc-----chhh----------hh
Q 027524 75 ------ETWPQNPLMPS-----------------------DPYDRAQARFWINFAENKG-----AAVW----------KL 110 (222)
Q Consensus 75 ------~~~~~~~l~p~-----------------------~~~~~a~~~~~~~~~~~~~-----~~~~----------~~ 110 (222)
+.||.-+++-+ +-..+...+.|..|+++.+ |.+. .+
T Consensus 167 ~l~eiiq~yPa~~~~ne~GK~v~~~~NKyflM~~e~d~~~~ke~~~eerkWR~WvDn~lVHLiSPNvYrn~~EsletFew 246 (370)
T KOG3029|consen 167 DLGEIIQMYPATSFFNEDGKEVNDILNKYFLMYREHDPGVSKETDEEERKWRSWVDNHLVHLISPNVYRNMGESLETFEW 246 (370)
T ss_pred CHHHHHHhccccccccccccchhhcchhheeeeeccCCCccccchHHHhHHHHHHhhhhhhhcCcccccChhhHHHHHHH
Confidence 23442111111 1112334566777776651 2221 00
Q ss_pred h-cCHH--------------------------------HHHHHHHHHHHHHHHHHhccc-CCCCccccCCCChhHHHHHH
Q 027524 111 F-RSIE--------------------------------DQENTMKEILEMLQIVEEHGL-GEKKFFHGDKIGLVDIAFGS 156 (222)
Q Consensus 111 ~-~~~~--------------------------------~~~~~~~~~~~~l~~l~e~~L-~~~~~l~G~~~s~AD~~l~~ 156 (222)
+ +.++ +.....+.+.+.++.+ -..| .+++|+.|.+|++||+.+++
T Consensus 247 f~q~G~w~~~FpawEr~lavY~GAtAM~lisK~LKkkhni~D~Re~lydA~d~W-vaalgknr~flGG~kPnLaDLsvfG 325 (370)
T KOG3029|consen 247 FSQAGEWDVHFPAWERDLAVYCGATAMYLISKMLKKKHNISDEREHLYDAADQW-VAALGKNRPFLGGKKPNLADLSVFG 325 (370)
T ss_pred HHHcCCccccCchHHHHHHHHhhHHHHHHHHHHHHhhcccchHHHHHHHHHHHH-HHHhCCCCCccCCCCCchhhhhhhh
Confidence 0 0000 0011245556666666 5555 57899999999999999999
Q ss_pred HHHHHHHHHHhhcccccCCCCCchHHHHHHHhcc
Q 027524 157 IVHWLQIIEDIVGVKLFESHKFPGLHAWLKNYKQ 190 (222)
Q Consensus 157 ~l~~~~~~~~~~~~~~~~~~~~p~l~~w~~~~~~ 190 (222)
++..+.++... .+.+ ...+|..|+-+|++
T Consensus 326 vl~sm~gc~af--kd~~---q~t~I~eW~~rmea 354 (370)
T KOG3029|consen 326 VLRSMEGCQAF--KDCL---QNTSIGEWYYRMEA 354 (370)
T ss_pred hhhHhhhhhHH--HHHH---hcchHHHHHHHHHH
Confidence 99999877653 2223 67899999999987
No 36
>cd03048 GST_N_Ure2p_like GST_N family, Ure2p-like subfamily; composed of the Saccharomyces cerevisiae Ure2p and related GSTs. Ure2p is a regulator for nitrogen catabolism in yeast. It represses the expression of several gene products involved in the use of poor nitrogen sources when rich sources are available. A transmissible conformational change of Ure2p results in a prion called [Ure3], an inactive, self-propagating and infectious amyloid. Ure2p displays a GST fold containing an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. The N-terminal TRX-fold domain is sufficient to induce the [Ure3] phenotype and is also called the prion domain of Ure2p. In addition to its role in nitrogen regulation, Ure2p confers protection to cells against heavy metal ion and oxidant toxicity, and shows glutathione (GSH) peroxidase activity. Characterized GSTs in this subfamily include Aspergillus fumigatus GSTs 1 and 2, and
Probab=99.76 E-value=3.9e-18 Score=111.71 Aligned_cols=73 Identities=33% Similarity=0.484 Sum_probs=67.0
Q ss_pred eEEecccCChhhhHHHHHHHhhCCCeeEEEcCCC---CChhHHHhhCCCCCcccEEEeC---CeeeehhHHHHHHHHhhC
Q 027524 4 VKLHGGLLSPFNYRVVCALKLKGIPFELIKEDLS---NKSALLLKYNPVHKKIPVLVHG---GKPVCESMVILEYIEETW 77 (222)
Q Consensus 4 ~~L~~~~~s~~~~~v~~~l~~~gi~~~~~~v~~~---~~~~~~~~~~p~~g~vP~L~~~---g~~l~es~aI~~yL~~~~ 77 (222)
++||+++. |+|++++++|+++|++|+.+.++.. ..+++|++.||. |+||+|+++ |..|+||.+|++||++++
T Consensus 2 ~~Ly~~~~-~~~~~v~~~l~~~gl~~~~~~~~~~~~~~~~~~~~~~~p~-~~vP~l~~~~~~g~~l~eS~aI~~yL~~~~ 79 (81)
T cd03048 2 ITLYTHGT-PNGFKVSIMLEELGLPYEIHPVDISKGEQKKPEFLKINPN-GRIPAIVDHNGTPLTVFESGAILLYLAEKY 79 (81)
T ss_pred eEEEeCCC-CChHHHHHHHHHcCCCcEEEEecCcCCcccCHHHHHhCcC-CCCCEEEeCCCCceEEEcHHHHHHHHHHHh
Confidence 79999885 9999999999999999999999864 567899999998 899999986 899999999999999987
Q ss_pred C
Q 027524 78 P 78 (222)
Q Consensus 78 ~ 78 (222)
+
T Consensus 80 ~ 80 (81)
T cd03048 80 D 80 (81)
T ss_pred C
Confidence 6
No 37
>cd03056 GST_N_4 GST_N family, unknown subfamily 4; composed of uncharacterized bacterial proteins with similarity to GSTs. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains.
Probab=99.76 E-value=3.4e-18 Score=109.64 Aligned_cols=70 Identities=37% Similarity=0.552 Sum_probs=65.0
Q ss_pred eEEecccCChhhhHHHHHHHhhCCCeeEEEcCCC---CChhHHHhhCCCCCcccEEEeCCeeeehhHHHHHHHH
Q 027524 4 VKLHGGLLSPFNYRVVCALKLKGIPFELIKEDLS---NKSALLLKYNPVHKKIPVLVHGGKPVCESMVILEYIE 74 (222)
Q Consensus 4 ~~L~~~~~s~~~~~v~~~l~~~gi~~~~~~v~~~---~~~~~~~~~~p~~g~vP~L~~~g~~l~es~aI~~yL~ 74 (222)
++||+++.||+|++++++|+++|++|+.+.++.. .+.+++++.||. |++|+|+++|..|+||.+|++||+
T Consensus 1 ~~Ly~~~~~~~~~~v~~~l~~~~~~~~~~~i~~~~~~~~~~~~~~~~p~-~~vP~l~~~~~~i~es~aI~~yl~ 73 (73)
T cd03056 1 MKLYGFPLSGNCYKVRLLLALLGIPYEWVEVDILKGETRTPEFLALNPN-GEVPVLELDGRVLAESNAILVYLA 73 (73)
T ss_pred CEEEeCCCCccHHHHHHHHHHcCCCcEEEEecCCCcccCCHHHHHhCCC-CCCCEEEECCEEEEcHHHHHHHhC
Confidence 5899999999999999999999999999999864 467889999998 899999999999999999999984
No 38
>cd03044 GST_N_EF1Bgamma GST_N family, Gamma subunit of Elongation Factor 1B (EFB1gamma) subfamily; EF1Bgamma is part of the eukaryotic translation elongation factor-1 (EF1) complex which plays a central role in the elongation cycle during protein biosynthesis. EF1 consists of two functionally distinct units, EF1A and EF1B. EF1A catalyzes the GTP-dependent binding of aminoacyl-tRNA to the ribosomal A site concomitant with the hydrolysis of GTP. The resulting inactive EF1A:GDP complex is recycled to the active GTP form by the guanine-nucleotide exchange factor EF1B, a complex composed of at least two subunits, alpha and gamma. Metazoan EFB1 contain a third subunit, beta. The EF1B gamma subunit contains a GST fold consisting of an N-terminal TRX-fold domain and a C-terminal alpha helical domain. The GST-like domain of EF1Bgamma is believed to mediate the dimerization of the EF1 complex, which in yeast is a dimer of the heterotrimer EF1A:EF1Balpha:EF1Bgamma. In addition to its role in prot
Probab=99.76 E-value=4.1e-18 Score=109.93 Aligned_cols=70 Identities=26% Similarity=0.341 Sum_probs=65.5
Q ss_pred EEecccCChhhhHHHHHHHhhCCCeeEEEcCCC--CChhHHHhhCCCCCcccEEEe-CCeeeehhHHHHHHHHh
Q 027524 5 KLHGGLLSPFNYRVVCALKLKGIPFELIKEDLS--NKSALLLKYNPVHKKIPVLVH-GGKPVCESMVILEYIEE 75 (222)
Q Consensus 5 ~L~~~~~s~~~~~v~~~l~~~gi~~~~~~v~~~--~~~~~~~~~~p~~g~vP~L~~-~g~~l~es~aI~~yL~~ 75 (222)
+||+++.||+|++++++|+++|++|+.+.++.. .+.++|+++||. |++|+|++ +|.+|+||.||++||++
T Consensus 2 ~Ly~~~~~~~~~~~~~~l~~~gi~~~~~~v~~~~~~~~~~~~~~nP~-~~vP~L~~~~g~~l~es~aI~~yL~~ 74 (75)
T cd03044 2 TLYTYPGNPRSLKILAAAKYNGLDVEIVDFQPGKENKTPEFLKKFPL-GKVPAFEGADGFCLFESNAIAYYVAN 74 (75)
T ss_pred eEecCCCCccHHHHHHHHHHcCCceEEEecccccccCCHHHHHhCCC-CCCCEEEcCCCCEEeeHHHHHHHHhh
Confidence 799999999999999999999999999999875 567899999999 99999997 58999999999999986
No 39
>cd03039 GST_N_Sigma_like GST_N family, Class Sigma_like; composed of GSTs belonging to class Sigma and similar proteins, including GSTs from class Mu, Pi and Alpha. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. Vertebrate class Sigma GSTs are characterized as GSH-dependent hematopoietic prostaglandin (PG) D synthases and are responsible for the production of PGD2 by catalyzing the isomerization of PGH2. The functions of PGD2 include the maintenance of body temperature, inhibition of platelet aggregation, bronchoconstriction, vasodilation and mediation of allergy and inflammation. Other class Sigma
Probab=99.75 E-value=2.3e-18 Score=110.23 Aligned_cols=71 Identities=23% Similarity=0.207 Sum_probs=64.0
Q ss_pred eEEecccCChhhhHHHHHHHhhCCCeeEEEcCCC-CChhHHHhhCCCCCcccEEEeCCeeeehhHHHHHHHHh
Q 027524 4 VKLHGGLLSPFNYRVVCALKLKGIPFELIKEDLS-NKSALLLKYNPVHKKIPVLVHGGKPVCESMVILEYIEE 75 (222)
Q Consensus 4 ~~L~~~~~s~~~~~v~~~l~~~gi~~~~~~v~~~-~~~~~~~~~~p~~g~vP~L~~~g~~l~es~aI~~yL~~ 75 (222)
++||+++.|++|+++|++|+++|++|+.+.++.. ....++.+.||. |++|+|+++|..|+||.||++||++
T Consensus 1 ~~Ly~~~~~~~~~~v~~~l~~~gi~~e~~~~~~~~~~~~~~~~~~p~-~~vP~L~~~~~~l~es~aI~~yL~~ 72 (72)
T cd03039 1 YKLTYFNIRGRGEPIRLLLADAGVEYEDVRITYEEWPELDLKPTLPF-GQLPVLEIDGKKLTQSNAILRYLAR 72 (72)
T ss_pred CEEEEEcCcchHHHHHHHHHHCCCCcEEEEeCHHHhhhhhhccCCcC-CCCCEEEECCEEEEecHHHHHHhhC
Confidence 5899999999999999999999999999998865 333458899998 8999999999999999999999974
No 40
>cd03047 GST_N_2 GST_N family, unknown subfamily 2; composed of uncharacterized bacterial proteins with similarity to GSTs. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. The sequence from Burkholderia cepacia was identified as part of a gene cluster involved in the degradation of 2,4,5-trichlorophenoxyacetic acid. Some GSTs (e.g. Class Zeta and Delta) are known to catalyze dechlorination reactions.
Probab=99.75 E-value=5.2e-18 Score=108.87 Aligned_cols=70 Identities=29% Similarity=0.389 Sum_probs=64.4
Q ss_pred eEEecccCChhhhHHHHHHHhhCCCeeEEEcCCC---CChhHHHhhCCCCCcccEEEeCCeeeehhHHHHHHHH
Q 027524 4 VKLHGGLLSPFNYRVVCALKLKGIPFELIKEDLS---NKSALLLKYNPVHKKIPVLVHGGKPVCESMVILEYIE 74 (222)
Q Consensus 4 ~~L~~~~~s~~~~~v~~~l~~~gi~~~~~~v~~~---~~~~~~~~~~p~~g~vP~L~~~g~~l~es~aI~~yL~ 74 (222)
++||+++.|+++++++++|+++|++|+.+.++.. ...+++++.||. |++|+|+++|..|+||.||++||+
T Consensus 1 ~~l~~~~~s~~~~~v~~~L~~~~l~~~~~~~~~~~~~~~~~~~~~~nP~-~~vP~L~~~~~~l~eS~aI~~YL~ 73 (73)
T cd03047 1 LTIWGRRSSINVQKVLWLLDELGLPYERIDAGGQFGGLDTPEFLAMNPN-GRVPVLEDGDFVLWESNAILRYLA 73 (73)
T ss_pred CEEEecCCCcchHHHHHHHHHcCCCCEEEEeccccccccCHHHHhhCCC-CCCCEEEECCEEEECHHHHHHHhC
Confidence 5899999999999999999999999999988753 456889999999 899999999999999999999984
No 41
>cd03049 GST_N_3 GST_N family, unknown subfamily 3; composed of uncharacterized bacterial proteins with similarity to GSTs. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains.
Probab=99.75 E-value=5.4e-18 Score=108.78 Aligned_cols=70 Identities=34% Similarity=0.435 Sum_probs=65.3
Q ss_pred eEEecccCChhhhHHHHHHHh--hCCCeeEEEcCCCCChhHHHhhCCCCCcccEEEe-CCeeeehhHHHHHHHH
Q 027524 4 VKLHGGLLSPFNYRVVCALKL--KGIPFELIKEDLSNKSALLLKYNPVHKKIPVLVH-GGKPVCESMVILEYIE 74 (222)
Q Consensus 4 ~~L~~~~~s~~~~~v~~~l~~--~gi~~~~~~v~~~~~~~~~~~~~p~~g~vP~L~~-~g~~l~es~aI~~yL~ 74 (222)
|+||+++.||+|++++++|++ +|++|+.+.++...+.+++++.||. |++|+|++ +|..++||.+|++||+
T Consensus 1 ~~Ly~~~~s~~~~~~~~~l~~~~~~i~~~~~~~~~~~~~~~~~~~~p~-~~vP~l~~~~g~~l~es~aI~~yLe 73 (73)
T cd03049 1 MKLLYSPTSPYVRKVRVAAHETGLGDDVELVLVNPWSDDESLLAVNPL-GKIPALVLDDGEALFDSRVICEYLD 73 (73)
T ss_pred CEEecCCCCcHHHHHHHHHHHhCCCCCcEEEEcCcccCChHHHHhCCC-CCCCEEEECCCCEEECHHHHHhhhC
Confidence 589999999999999999999 8999999999877778899999998 99999985 8899999999999985
No 42
>cd03037 GST_N_GRX2 GST_N family, Glutaredoxin 2 (GRX2) subfamily; composed of bacterial proteins similar to E. coli GRX2, an atypical GRX with a molecular mass of about 24kD, compared with other GRXs which are 9-12kD in size. GRX2 adopts a GST fold containing an N-terminal thioredoxin-fold domain and a C-terminal alpha helical domain. It contains a redox active CXXC motif located in the N-terminal domain but is not able to reduce ribonucleotide reductase like other GRXs. However, it catalyzes GSH-dependent protein disulfide reduction of other substrates efficiently. GRX2 is thought to function primarily in catalyzing the reversible glutathionylation of proteins in cellular redox regulation including stress responses.
Probab=99.74 E-value=9.9e-18 Score=106.98 Aligned_cols=70 Identities=29% Similarity=0.364 Sum_probs=61.6
Q ss_pred eEEecccCChhhhHHHHHHHhhCCCeeEEEcCCCCChhHHHhhCCCCCcccEEEeC-CeeeehhHHHHHHHHh
Q 027524 4 VKLHGGLLSPFNYRVVCALKLKGIPFELIKEDLSNKSALLLKYNPVHKKIPVLVHG-GKPVCESMVILEYIEE 75 (222)
Q Consensus 4 ~~L~~~~~s~~~~~v~~~l~~~gi~~~~~~v~~~~~~~~~~~~~p~~g~vP~L~~~-g~~l~es~aI~~yL~~ 75 (222)
|+||+++.||+|+++|++|+++|++|+.+.++... ....++.+|. |++|+|+++ |..++||.+|++||++
T Consensus 1 ~~Ly~~~~~p~~~rvr~~L~~~gl~~~~~~~~~~~-~~~~~~~~~~-~~vP~L~~~~~~~l~es~aI~~yL~~ 71 (71)
T cd03037 1 MKLYIYEHCPFCVKARMIAGLKNIPVEQIILQNDD-EATPIRMIGA-KQVPILEKDDGSFMAESLDIVAFIDE 71 (71)
T ss_pred CceEecCCCcHhHHHHHHHHHcCCCeEEEECCCCc-hHHHHHhcCC-CccCEEEeCCCeEeehHHHHHHHHhC
Confidence 57999999999999999999999999999887543 2344678998 899999975 8999999999999974
No 43
>cd03046 GST_N_GTT1_like GST_N family, Saccharomyces cerevisiae GTT1-like subfamily; composed of predominantly uncharacterized proteins with similarity to the S. cerevisiae GST protein, GTT1, and the Schizosaccharomyces pombe GST-III. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. GTT1, a homodimer, exhibits GST activity with standard substrates and associates with the endoplasmic reticulum. Its expression is induced after diauxic shift and remains high throughout the stationary phase. S. pomb
Probab=99.74 E-value=1.1e-17 Score=108.20 Aligned_cols=73 Identities=30% Similarity=0.480 Sum_probs=66.5
Q ss_pred eEEecccCChhhhHHHHHHHhhCCCeeEEEcCCC---CChhHHHhhCCCCCcccEEEeCCeeeehhHHHHHHHHhhCC
Q 027524 4 VKLHGGLLSPFNYRVVCALKLKGIPFELIKEDLS---NKSALLLKYNPVHKKIPVLVHGGKPVCESMVILEYIEETWP 78 (222)
Q Consensus 4 ~~L~~~~~s~~~~~v~~~l~~~gi~~~~~~v~~~---~~~~~~~~~~p~~g~vP~L~~~g~~l~es~aI~~yL~~~~~ 78 (222)
|+||+++. +++++++++|+++|++|+.+.++.. .+.+++++.||. |++|+|+++|..|+||.+|++||++++|
T Consensus 1 ~~l~~~~~-~~~~~v~~~l~~~~i~~~~~~~~~~~~~~~~~~~~~~~p~-~~vP~l~~~g~~l~es~aI~~yL~~~~~ 76 (76)
T cd03046 1 ITLYHLPR-SRSFRILWLLEELGLPYELVLYDRGPGEQAPPEYLAINPL-GKVPVLVDGDLVLTESAAIILYLAEKYG 76 (76)
T ss_pred CEEEeCCC-CChHHHHHHHHHcCCCcEEEEeCCCCCccCCHHHHhcCCC-CCCCEEEECCEEEEcHHHHHHHHHHhCc
Confidence 58999876 5899999999999999999999864 567899999998 8999999999999999999999999874
No 44
>cd03051 GST_N_GTT2_like GST_N family, Saccharomyces cerevisiae GTT2-like subfamily; composed of predominantly uncharacterized proteins with similarity to the S. cerevisiae GST protein, GTT2. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. GTT2, a homodimer, exhibits GST activity with standard substrates. Strains with deleted GTT2 genes are viable but exhibit increased sensitivity to heat shock.
Probab=99.73 E-value=1e-17 Score=107.65 Aligned_cols=70 Identities=36% Similarity=0.483 Sum_probs=63.9
Q ss_pred eEEecccCChhhhHHHHHHHhhCCCeeEEEcCCC---CChhHHHhhCCCCCcccEEEe-CCeeeehhHHHHHHHH
Q 027524 4 VKLHGGLLSPFNYRVVCALKLKGIPFELIKEDLS---NKSALLLKYNPVHKKIPVLVH-GGKPVCESMVILEYIE 74 (222)
Q Consensus 4 ~~L~~~~~s~~~~~v~~~l~~~gi~~~~~~v~~~---~~~~~~~~~~p~~g~vP~L~~-~g~~l~es~aI~~yL~ 74 (222)
|+||+++.||+|++++++|+++|++|+.+.++.. ...+++.+.||. |++|+|++ +|..++||.+|++||+
T Consensus 1 ~~Ly~~~~s~~~~~~~~~L~~~~l~~~~~~v~~~~~~~~~~~~~~~~p~-~~vP~l~~~~~~~l~es~aI~~yLe 74 (74)
T cd03051 1 MKLYDSPTAPNPRRVRIFLAEKGIDVPLVTVDLAAGEQRSPEFLAKNPA-GTVPVLELDDGTVITESVAICRYLE 74 (74)
T ss_pred CEEEeCCCCcchHHHHHHHHHcCCCceEEEeecccCccCCHHHHhhCCC-CCCCEEEeCCCCEEecHHHHHHHhC
Confidence 5899999999999999999999999999998764 356789999998 89999995 7899999999999985
No 45
>cd03055 GST_N_Omega GST_N family, Class Omega subfamily; GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. Class Omega GSTs show little or no GSH-conjugating activity towards standard GST substrates. Instead, they catalyze the GSH dependent reduction of protein disulfides, dehydroascorbate and monomethylarsonate, activities which are more characteristic of glutaredoxins. They contain a conserved cysteine equivalent to the first cysteine in the CXXC motif of glutaredoxins, which is a redox active residue capable of reducing GSH mixed disulfides in a monothiol mechanism. Polymorphisms of the class Omega
Probab=99.73 E-value=1.5e-17 Score=110.77 Aligned_cols=71 Identities=35% Similarity=0.563 Sum_probs=66.3
Q ss_pred ceEEecccCChhhhHHHHHHHhhCCCeeEEEcCCCCChhHHHhhCCCCCcccEEEeC-CeeeehhHHHHHHHH
Q 027524 3 EVKLHGGLLSPFNYRVVCALKLKGIPFELIKEDLSNKSALLLKYNPVHKKIPVLVHG-GKPVCESMVILEYIE 74 (222)
Q Consensus 3 ~~~L~~~~~s~~~~~v~~~l~~~gi~~~~~~v~~~~~~~~~~~~~p~~g~vP~L~~~-g~~l~es~aI~~yL~ 74 (222)
.++||+++.||+|++++++|+++|++|+.+.++.....+++.+.||. |++|+|+++ |..|+||.+|++||+
T Consensus 18 ~~~Ly~~~~sp~~~kv~~~L~~~gl~~~~~~v~~~~~~~~~~~~np~-~~vPvL~~~~g~~l~eS~aI~~yLe 89 (89)
T cd03055 18 IIRLYSMRFCPYAQRARLVLAAKNIPHEVININLKDKPDWFLEKNPQ-GKVPALEIDEGKVVYESLIICEYLD 89 (89)
T ss_pred cEEEEeCCCCchHHHHHHHHHHcCCCCeEEEeCCCCCcHHHHhhCCC-CCcCEEEECCCCEEECHHHHHHhhC
Confidence 48999999999999999999999999999999887767789999998 899999986 899999999999985
No 46
>cd03042 GST_N_Zeta GST_N family, Class Zeta subfamily; GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. Class Zeta GSTs, also known as maleylacetoacetate (MAA) isomerases, catalyze the isomerization of MAA to fumarylacetoacetate, the penultimate step in tyrosine/phenylalanine catabolism, using GSH as a cofactor. They show little GSH-conjugating activity towards traditional GST substrates but display modest GSH peroxidase activity. They are also implicated in the detoxification of the carcinogen dichloroacetic acid by catalyzing its dechlorination to glyoxylic acid.
Probab=99.73 E-value=1.6e-17 Score=106.47 Aligned_cols=70 Identities=33% Similarity=0.489 Sum_probs=65.0
Q ss_pred eEEecccCChhhhHHHHHHHhhCCCeeEEEcCCC---CChhHHHhhCCCCCcccEEEeCCeeeehhHHHHHHHH
Q 027524 4 VKLHGGLLSPFNYRVVCALKLKGIPFELIKEDLS---NKSALLLKYNPVHKKIPVLVHGGKPVCESMVILEYIE 74 (222)
Q Consensus 4 ~~L~~~~~s~~~~~v~~~l~~~gi~~~~~~v~~~---~~~~~~~~~~p~~g~vP~L~~~g~~l~es~aI~~yL~ 74 (222)
|+||+++.|++|++++++|+++|++|+.+.++.. ...+++++.||. |++|+|+++|..++||.||++||+
T Consensus 1 ~~L~~~~~~~~~~~~~~~l~~~gi~~~~~~~~~~~~~~~~~~~~~~~p~-~~vP~l~~~~~~l~es~aI~~yL~ 73 (73)
T cd03042 1 MILYSYFRSSASYRVRIALNLKGLDYEYVPVNLLKGEQLSPAYRALNPQ-GLVPTLVIDGLVLTQSLAIIEYLD 73 (73)
T ss_pred CEEecCCCCcchHHHHHHHHHcCCCCeEEEecCccCCcCChHHHHhCCC-CCCCEEEECCEEEEcHHHHHHHhC
Confidence 5899999999999999999999999999999864 456889999998 899999999999999999999985
No 47
>cd03057 GST_N_Beta GST_N family, Class Beta subfamily; GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. Unlike mammalian GSTs which detoxify a broad range of compounds, the bacterial class Beta GSTs exhibit limited GSH conjugating activity with a narrow range of substrates. In addition to GSH conjugation, they also bind antibiotics and reduce the antimicrobial activity of beta-lactam drugs. The structure of the Proteus mirabilis enzyme reveals that the cysteine in the active site forms a covalent bond with GSH.
Probab=99.73 E-value=1.9e-17 Score=107.38 Aligned_cols=73 Identities=36% Similarity=0.511 Sum_probs=65.7
Q ss_pred eEEecccCChhhhHHHHHHHhhCCCeeEEEcCCC---CChhHHHhhCCCCCcccEEEeC-CeeeehhHHHHHHHHhhCC
Q 027524 4 VKLHGGLLSPFNYRVVCALKLKGIPFELIKEDLS---NKSALLLKYNPVHKKIPVLVHG-GKPVCESMVILEYIEETWP 78 (222)
Q Consensus 4 ~~L~~~~~s~~~~~v~~~l~~~gi~~~~~~v~~~---~~~~~~~~~~p~~g~vP~L~~~-g~~l~es~aI~~yL~~~~~ 78 (222)
|+||+++.| ++++++++|+++|++|+.+.++.. ...+++++.||. |++|+|+++ |..++||.+|++||++++|
T Consensus 1 ~~Ly~~~~~-~~~~v~~~l~~~~i~~~~~~~~~~~~~~~~~~~~~~np~-~~vP~l~~~~g~~l~eS~aI~~yL~~~~p 77 (77)
T cd03057 1 MKLYYSPGA-CSLAPHIALEELGLPFELVRVDLRTKTQKGADYLAINPK-GQVPALVLDDGEVLTESAAILQYLADLHP 77 (77)
T ss_pred CEEEeCCCC-chHHHHHHHHHcCCCceEEEEecccCccCCHhHHHhCCC-CCCCEEEECCCcEEEcHHHHHHHHHHhCc
Confidence 589999876 699999999999999999988875 357899999998 899999986 8999999999999999875
No 48
>cd03077 GST_N_Alpha GST_N family, Class Alpha subfamily; GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. The class Alpha subfamily is composed of eukaryotic GSTs which can form homodimer and heterodimers. There are at least six types of class Alpha GST subunits in rats, four of which have human counterparts, resulting in many possible isoenzymes with different activities, tissue distribution and substrate specificities. Human GSTA1-1 and GSTA2-2 show high GSH peroxidase activity. GSTA3-3 catalyzes the isomerization of intermediates in steroid hormone biosynthesis. GSTA4-4 preferentially catalyzes the
Probab=99.72 E-value=3.8e-17 Score=106.35 Aligned_cols=72 Identities=19% Similarity=0.167 Sum_probs=62.6
Q ss_pred ceEEecccCChhhhHHHHHHHhhCCCeeEEEcCCCCChhHHHhhC-----CCCCcccEEEeCCeeeehhHHHHHHHHhhC
Q 027524 3 EVKLHGGLLSPFNYRVVCALKLKGIPFELIKEDLSNKSALLLKYN-----PVHKKIPVLVHGGKPVCESMVILEYIEETW 77 (222)
Q Consensus 3 ~~~L~~~~~s~~~~~v~~~l~~~gi~~~~~~v~~~~~~~~~~~~~-----p~~g~vP~L~~~g~~l~es~aI~~yL~~~~ 77 (222)
+++||+++.|+.+++++++|+++|++|+.+.++.. +++.+.+ |. |+||+|++||.+|+||.||++||++++
T Consensus 1 ~~~Ly~~~~~~~~~~v~~~l~~~gi~~e~~~v~~~---~~~~~~~~~~~~~~-g~vP~L~~~g~~l~ES~AI~~YL~~~~ 76 (79)
T cd03077 1 KPVLHYFNGRGRMESIRWLLAAAGVEFEEKFIESA---EDLEKLKKDGSLMF-QQVPMVEIDGMKLVQTRAILNYIAGKY 76 (79)
T ss_pred CCEEEEeCCCChHHHHHHHHHHcCCCcEEEEeccH---HHHHhhccccCCCC-CCCCEEEECCEEEeeHHHHHHHHHHHc
Confidence 36899999999999999999999999999988752 3344444 46 899999999999999999999999987
Q ss_pred C
Q 027524 78 P 78 (222)
Q Consensus 78 ~ 78 (222)
+
T Consensus 77 ~ 77 (79)
T cd03077 77 N 77 (79)
T ss_pred C
Confidence 6
No 49
>PF02798 GST_N: Glutathione S-transferase, N-terminal domain; InterPro: IPR004045 In eukaryotes, glutathione S-transferases (GSTs) participate in the detoxification of reactive electrophillic compounds by catalysing their conjugation to glutathione. The GST domain is also found in S-crystallins from squid, and proteins with no known GST activity, such as eukaryotic elongation factors 1-gamma and the HSP26 family of stress-related proteins, which include auxin-regulated proteins in plants and stringent starvation proteins in Escherichia coli. The major lens polypeptide of Cephalopoda is also a GST [, , , ]. Bacterial GSTs of known function often have a specific, growth-supporting role in biodegradative metabolism: epoxide ring opening and tetrachlorohydroquinone reductive dehalogenation are two examples of the reactions catalysed by these bacterial GSTs. Some regulatory proteins, like the stringent starvation proteins, also belong to the GST family [, ]. GST seems to be absent from Archaea in which gamma-glutamylcysteine substitute to glutathione as major thiol. Soluble GSTs activate glutathione (GSH) to GS-. In many GSTs, this is accomplished by a Tyr at H-bonding distance from the sulphur of GSH. These enzymes catalyse nucleophilic attack by reduced glutathione (GSH) on nonpolar compounds that contain an electrophillic carbon, nitrogen, or sulphur atom []. Glutathione S-transferases form homodimers, but in eukaryotes can also form heterodimers of the A1 and A2 or YC1 and YC2 subunits. The homodimeric enzymes display a conserved structural fold, with each monomer composed of two distinct domains []. The N-terminal domain forms a thioredoxin-like fold that binds the glutathione moiety, while the C-terminal domain contains several hydrophobic alpha-helices that specifically bind hydrophobic substrates. This entry represents the N-terminal domain of GST.; GO: 0005515 protein binding; PDB: 2VCT_H 2WJU_B 4ACS_A 1BYE_D 1AXD_B 2VCV_P 1TDI_A 1JLV_D 1Y6E_A 1U88_B ....
Probab=99.71 E-value=4.4e-17 Score=105.26 Aligned_cols=72 Identities=31% Similarity=0.392 Sum_probs=60.4
Q ss_pred eEEecccCChhhhHHHHHHHhhCCCeeEEEcCCC---CChhHHHhhCCCCCcccEEEeC-CeeeehhHHHHHHHHh
Q 027524 4 VKLHGGLLSPFNYRVVCALKLKGIPFELIKEDLS---NKSALLLKYNPVHKKIPVLVHG-GKPVCESMVILEYIEE 75 (222)
Q Consensus 4 ~~L~~~~~s~~~~~v~~~l~~~gi~~~~~~v~~~---~~~~~~~~~~p~~g~vP~L~~~-g~~l~es~aI~~yL~~ 75 (222)
|+|++++.++++.++|++|+++|++|+.+.++.. .+.++|++.||..|++|+|+++ |..|+||.||++||++
T Consensus 1 ~~l~l~~~~~~~~~~r~~l~~~gv~~e~~~v~~~~~~~~~~e~~~~~p~~g~vP~l~~~~~~~l~es~AI~~YLa~ 76 (76)
T PF02798_consen 1 MTLTLYNGRGRSERIRLLLAEKGVEYEDVRVDFEKGEHKSPEFLAINPMFGKVPALEDGDGFVLTESNAILRYLAR 76 (76)
T ss_dssp EEEEEESSSTTTHHHHHHHHHTT--EEEEEEETTTTGGGSHHHHHHTTTSSSSSEEEETTTEEEESHHHHHHHHHH
T ss_pred CEEEEECCCCchHHHHHHHHHhcccCceEEEecccccccchhhhhcccccceeeEEEECCCCEEEcHHHHHHHhCC
Confidence 3455555666999999999999999999999874 3459999999963699999998 9999999999999985
No 50
>cd03075 GST_N_Mu GST_N family, Class Mu subfamily; GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. The class Mu subfamily is composed of eukaryotic GSTs. In rats, at least six distinct class Mu subunits have been identified, with homologous genes in humans for five of these subunits. Class Mu GSTs can form homodimers and heterodimers, giving a large number of possible isoenzymes that can be formed, all with overlapping activities but different substrate specificities. They are the most abundant GSTs in human liver, skeletal muscle and brain, and are believed to provide protection against diseases inc
Probab=99.71 E-value=3.9e-17 Score=107.02 Aligned_cols=72 Identities=18% Similarity=0.228 Sum_probs=62.0
Q ss_pred EEecccCChhhhHHHHHHHhhCCCeeEEEcCCCC----ChhHHHhh-----CCCCCcccEEEeCCeeeehhHHHHHHHHh
Q 027524 5 KLHGGLLSPFNYRVVCALKLKGIPFELIKEDLSN----KSALLLKY-----NPVHKKIPVLVHGGKPVCESMVILEYIEE 75 (222)
Q Consensus 5 ~L~~~~~s~~~~~v~~~l~~~gi~~~~~~v~~~~----~~~~~~~~-----~p~~g~vP~L~~~g~~l~es~aI~~yL~~ 75 (222)
+|||+..++.|++++++|+++|++|+.+.+++.. ..+++... +|+ |+||+|++||.+|+||.||++||++
T Consensus 2 ~l~y~~~~~~~~~~~~~l~~~gi~~e~~~v~~~~~~~~~~~~~~~~~~~~~~P~-g~vP~L~~~g~~l~ES~AIl~YLa~ 80 (82)
T cd03075 2 TLGYWDIRGLAQPIRLLLEYTGEKYEEKRYELGDAPDYDRSQWLNEKFKLGLDF-PNLPYYIDGDVKLTQSNAILRYIAR 80 (82)
T ss_pred EEEEeCCccccHHHHHHHHHcCCCcEEEEeccCCccccchHhhhccchhcCCcC-CCCCEEEECCEEEeehHHHHHHHhh
Confidence 7999999999999999999999999999998753 13445432 298 8999999999999999999999998
Q ss_pred hC
Q 027524 76 TW 77 (222)
Q Consensus 76 ~~ 77 (222)
++
T Consensus 81 ~~ 82 (82)
T cd03075 81 KH 82 (82)
T ss_pred cC
Confidence 64
No 51
>cd03040 GST_N_mPGES2 GST_N family; microsomal Prostaglandin E synthase Type 2 (mPGES2) subfamily; mPGES2 is a membrane-anchored dimeric protein containing a CXXC motif which catalyzes the isomerization of PGH2 to PGE2. Unlike cytosolic PGE synthase (cPGES) and microsomal PGES Type 1 (mPGES1), mPGES2 does not require glutathione (GSH) for its activity, although its catalytic rate is increased two- to four-fold in the presence of DTT, GSH or other thiol compounds. PGE2 is widely distributed in various tissues and is implicated in the sleep/wake cycle, relaxation/contraction of smooth muscle, excretion of sodium ions, maintenance of body temperature and mediation of inflammation. mPGES2 contains an N-terminal hydrophobic domain which is membrane associated, and a C-terminal soluble domain with a GST-like structure.
Probab=99.71 E-value=5.6e-17 Score=105.14 Aligned_cols=72 Identities=25% Similarity=0.469 Sum_probs=62.8
Q ss_pred ceEEecccCChhhhHHHHHHHhhCCCeeEEEcCCCCChhHHHhhCCCCCcccEEEeC----CeeeehhHHHHHHHHhhC
Q 027524 3 EVKLHGGLLSPFNYRVVCALKLKGIPFELIKEDLSNKSALLLKYNPVHKKIPVLVHG----GKPVCESMVILEYIEETW 77 (222)
Q Consensus 3 ~~~L~~~~~s~~~~~v~~~l~~~gi~~~~~~v~~~~~~~~~~~~~p~~g~vP~L~~~----g~~l~es~aI~~yL~~~~ 77 (222)
+++||+++.||+|++++++|+++||+|+.+.++..... + ...||. ++||+|+++ |.+|+||.+|++||++..
T Consensus 1 ~i~Ly~~~~~p~c~kv~~~L~~~gi~y~~~~~~~~~~~-~-~~~~~~-~~vP~l~~~~~~~~~~l~eS~~I~~yL~~~~ 76 (77)
T cd03040 1 KITLYQYKTCPFCCKVRAFLDYHGIPYEVVEVNPVSRK-E-IKWSSY-KKVPILRVESGGDGQQLVDSSVIISTLKTYL 76 (77)
T ss_pred CEEEEEcCCCHHHHHHHHHHHHCCCceEEEECCchhHH-H-HHHhCC-CccCEEEECCCCCccEEEcHHHHHHHHHHHc
Confidence 48999999999999999999999999999998764332 3 466998 899999965 789999999999999864
No 52
>cd03185 GST_C_Tau GST_C family, Class Tau subfamily; GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. The GST fold contains an N-terminal thioredoxin-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. GSH binds to the N-terminal domain while the hydrophobic substrate occupies a pocket in the C-terminal domain. The plant-specific class Tau GST subfamily has undergone extensive gene duplication. The Arabidopsis and Oryza genomes contain 28 and 40 Tau GSTs, respectively. They are primarily responsible for herbicide detoxification together with class Phi GSTs, showing class specificity in substrate preference. Tau enzymes are highly efficient in detoxifying diphenylether and aryloxyphenoxypropi
Probab=99.71 E-value=2.3e-16 Score=111.86 Aligned_cols=121 Identities=44% Similarity=0.764 Sum_probs=95.1
Q ss_pred HHHHHHHHHHHHHhhh-cchhhhhh-cCHHHHHHHHHHHHHHHHHHHhcccCCCCccccCCCChhHHHHHHHHHHHHHHH
Q 027524 88 YDRAQARFWINFAENK-GAAVWKLF-RSIEDQENTMKEILEMLQIVEEHGLGEKKFFHGDKIGLVDIAFGSIVHWLQIIE 165 (222)
Q Consensus 88 ~~~a~~~~~~~~~~~~-~~~~~~~~-~~~~~~~~~~~~~~~~l~~l~e~~L~~~~~l~G~~~s~AD~~l~~~l~~~~~~~ 165 (222)
.+|++++.|+.+++.. .+.+...+ ..++..+.....+.+.++.| |..|++++|++|+++|+||+++++.+.++....
T Consensus 2 ~~ra~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l-e~~L~~~~~l~G~~~t~ADi~l~~~~~~~~~~~ 80 (126)
T cd03185 2 YERAVARFWAAFIDDKLFPAGRKVLAAKGEEREKAKEEALEALKVL-EEELGGKPFFGGDTIGYVDIALGSFLGWFRAYE 80 (126)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHccchHHHHHHHHHHHHHHHHH-HHHhcCCCCCCCCCcchHHHHHHHHHHHHHHHH
Confidence 4689999999998877 44443222 23445566788999999999 999998899999999999999999999986544
Q ss_pred HhhcccccCCCCCchHHHHHHHhcccchhhccCCChHHHHHHHH
Q 027524 166 DIVGVKLFESHKFPGLHAWLKNYKQVPVVEENLPSRDELLVFFK 209 (222)
Q Consensus 166 ~~~~~~~~~~~~~p~l~~w~~~~~~~p~~~~~~~~~~~~~~~~~ 209 (222)
...+.+..+.+.+|++.+|+++++++|++++++...+...++++
T Consensus 81 ~~~~~~~~~~~~~p~l~~w~~~~~~~p~~~~~~~~~~~~~~~~~ 124 (126)
T cd03185 81 EVGGVKLLDEEKTPLLAAWAERFLELEAVKEVLPDRDKLVEFAK 124 (126)
T ss_pred HHcCccccCcccCchHHHHHHHHHhccHHHHhCCCHHHHHHHHH
Confidence 43344332346899999999999999999999998777666554
No 53
>PF13409 GST_N_2: Glutathione S-transferase, N-terminal domain; PDB: 3C8E_B 3M1G_A 3R3E_A 3O3T_A 1RK4_A 1K0O_B 1K0N_A 3QR6_A 3SWL_A 3TGZ_B ....
Probab=99.70 E-value=4.4e-17 Score=103.54 Aligned_cols=65 Identities=46% Similarity=0.722 Sum_probs=56.8
Q ss_pred CChhhhHHHHHHHhhCCCeeEEEcCC----CCChhHHHhhCCCCCcccEEEe-CCeeeehhHHHHHHHHhh
Q 027524 11 LSPFNYRVVCALKLKGIPFELIKEDL----SNKSALLLKYNPVHKKIPVLVH-GGKPVCESMVILEYIEET 76 (222)
Q Consensus 11 ~s~~~~~v~~~l~~~gi~~~~~~v~~----~~~~~~~~~~~p~~g~vP~L~~-~g~~l~es~aI~~yL~~~ 76 (222)
+|||++|++++|+++|++|+...+.. ...+++|.+.||. |+||+|++ +|.++.||.+|++||+++
T Consensus 1 ~sP~a~Rv~i~l~~~gl~~~~~~v~~~~~~~~~~~~~~~~~p~-~~VP~L~~~~g~vi~eS~~I~~yL~~~ 70 (70)
T PF13409_consen 1 FSPFAHRVRIALEEKGLPYEIKVVPLIPKGEQKPPEFLALNPR-GKVPVLVDPDGTVINESLAILEYLEEQ 70 (70)
T ss_dssp T-HHHHHHHHHHHHHTGTCEEEEEETTTTBCTTCHBHHHHSTT--SSSEEEETTTEEEESHHHHHHHHHHT
T ss_pred CchHhHHHHHHHHHhCCCCEEEEEeeecCccccChhhhccCcC-eEEEEEEECCCCEeeCHHHHHHHHhcC
Confidence 59999999999999999999988843 2556899999999 89999997 899999999999999874
No 54
>cd03080 GST_N_Metaxin_like GST_N family, Metaxin subfamily, Metaxin-like proteins; a heterogenous group of proteins, predominantly uncharacterized, with similarity to metaxins and GSTs. Metaxin 1 is a component of a preprotein import complex of the mitochondrial outer membrane. It extends to the cytosol and is anchored to the mitochondrial membrane through its C-terminal domain. In mice, metaxin is required for embryonic development. In humans, alterations in the metaxin gene may be associated with Gaucher disease. One characterized member of this subgroup is a novel GST from Rhodococcus with toluene o-monooxygenase and gamma-glutamylcysteine synthetase activities. Also members are the cadmium-inducible lysosomal protein CDR-1 and its homologs from C. elegans, and the failed axon connections (fax) protein from Drosophila. CDR-1 is an integral membrane protein that functions to protect against cadmium toxicity and may also have a role in osmoregulation to maintain salt balance in C. ele
Probab=99.70 E-value=9.1e-17 Score=103.57 Aligned_cols=67 Identities=31% Similarity=0.509 Sum_probs=60.9
Q ss_pred eEEeccc-------CChhhhHHHHHHHhhCCCeeEEEcCCCCChhHHHhhCCCCCcccEEEeCCeeeehhHHHHHHHHhh
Q 027524 4 VKLHGGL-------LSPFNYRVVCALKLKGIPFELIKEDLSNKSALLLKYNPVHKKIPVLVHGGKPVCESMVILEYIEET 76 (222)
Q Consensus 4 ~~L~~~~-------~s~~~~~v~~~l~~~gi~~~~~~v~~~~~~~~~~~~~p~~g~vP~L~~~g~~l~es~aI~~yL~~~ 76 (222)
++||+++ .||+|++++++|+++|++|+.+.++. .+.||. |++|+|+++|..|+||.+|++||+++
T Consensus 2 ~~L~~~~~~~~~~~~sp~~~~v~~~L~~~gi~~~~~~~~~-------~~~~p~-g~vPvl~~~g~~l~eS~~I~~yL~~~ 73 (75)
T cd03080 2 ITLYQFPRAFGVPSLSPFCLKVETFLRMAGIPYENKFGGL-------AKRSPK-GKLPFIELNGEKIADSELIIDHLEEK 73 (75)
T ss_pred EEEEecCCCCCCCCCCHHHHHHHHHHHHCCCCcEEeecCc-------ccCCCC-CCCCEEEECCEEEcCHHHHHHHHHHH
Confidence 6899888 68999999999999999999998864 257898 89999999999999999999999998
Q ss_pred CC
Q 027524 77 WP 78 (222)
Q Consensus 77 ~~ 78 (222)
++
T Consensus 74 ~~ 75 (75)
T cd03080 74 YG 75 (75)
T ss_pred cC
Confidence 64
No 55
>cd03184 GST_C_Omega GST_C family, Class Omega subfamily; GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. The GST fold contains an N-terminal thioredoxin-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. GSH binds to the N-terminal domain while the hydrophobic substrate occupies a pocket in the C-terminal domain. Class Omega GSTs show little or no GSH-conjugating activity towards standard GST substrates. Instead, they catalyze the GSH dependent reduction of protein disulfides, dehydroascorbate and monomethylarsonate, activities which are more characteristic of glutaredoxins. They contain a conserved cysteine equivalent to the first cysteine in the CXXC motif of glutaredoxins, which is a re
Probab=99.66 E-value=6.8e-16 Score=109.30 Aligned_cols=120 Identities=25% Similarity=0.427 Sum_probs=95.2
Q ss_pred HHHHHHHHHHHHhhhcchhhhhhcCHHHHHHHHHHHHHHHHHHHhcccCC--CCccccCCCChhHHHHHHHHHHHHHHHH
Q 027524 89 DRAQARFWINFAENKGAAVWKLFRSIEDQENTMKEILEMLQIVEEHGLGE--KKFFHGDKIGLVDIAFGSIVHWLQIIED 166 (222)
Q Consensus 89 ~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~e~~L~~--~~~l~G~~~s~AD~~l~~~l~~~~~~~~ 166 (222)
+||+.+.|+++++...+.+......++..+...+.+.+.++.+ |+.|++ ++|++|+++|+||+++++.+.++.....
T Consensus 2 ~ra~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l-e~~L~~~~~~yl~G~~~t~aDi~~~~~~~~~~~~~~ 80 (124)
T cd03184 2 EKAQQKLLLERFSKVVSAFYKLLGAPSDREEKKAELRSALENL-EEELTKRGTPFFGGDSPGMVDYMIWPWFERLEALKL 80 (124)
T ss_pred hHHHHHHHHHHHhhhhHHHHHHHhccccchhhHHHHHHHHHHH-HHHHHhcCCCCcCCCCccHHHHHhhHHHHHHHHHHh
Confidence 5899999999997665555422222556677888999999999 999974 7999999999999999999988765433
Q ss_pred hhcccccCCCCCchHHHHHHHhcccchhhccCCChHHHHHHHHH
Q 027524 167 IVGVKLFESHKFPGLHAWLKNYKQVPVVEENLPSRDELLVFFKG 210 (222)
Q Consensus 167 ~~~~~~~~~~~~p~l~~w~~~~~~~p~~~~~~~~~~~~~~~~~~ 210 (222)
..|. ....+.+|+|.+|++++.++|+++.++.+.+.+.++++.
T Consensus 81 ~~~~-~~~~~~~p~l~~w~~r~~~~p~v~~~~~~~~~~~~~~~~ 123 (124)
T cd03184 81 LLGY-EFPLDRFPKLKKWMDAMKEDPAVQAFYTDTEIHAEFLKS 123 (124)
T ss_pred hccc-cCCcccChHHHHHHHHhccChHHHHHhCCHHHHHHHHhc
Confidence 2221 223568999999999999999999999999888888763
No 56
>cd03038 GST_N_etherase_LigE GST_N family, Beta etherase LigE subfamily; composed of proteins similar to Sphingomonas paucimobilis beta etherase, LigE, a GST-like protein that catalyzes the cleavage of the beta-aryl ether linkages present in low-moleculer weight lignins using GSH as the hydrogen donor. This reaction is an essential step in the degradation of lignin, a complex phenolic polymer that is the most abundant aromatic material in the biosphere. The beta etherase activity of LigE is enantioselective and it complements the activity of the other GST family beta etherase, LigF.
Probab=99.66 E-value=2.7e-16 Score=103.68 Aligned_cols=67 Identities=28% Similarity=0.543 Sum_probs=58.6
Q ss_pred cCChhhhHHHHHHHhhCCCeeEEEcCCCCC---hhHHHhhCCCCCcccEEEeC-CeeeehhHHHHHHHHhhCC
Q 027524 10 LLSPFNYRVVCALKLKGIPFELIKEDLSNK---SALLLKYNPVHKKIPVLVHG-GKPVCESMVILEYIEETWP 78 (222)
Q Consensus 10 ~~s~~~~~v~~~l~~~gi~~~~~~v~~~~~---~~~~~~~~p~~g~vP~L~~~-g~~l~es~aI~~yL~~~~~ 78 (222)
++||+|++++++|+++|++|+.+.++.... ..++ +.||. |++|+|+++ |..|+||.+|++||++++|
T Consensus 14 ~~Sp~~~kv~~~L~~~~i~~~~~~~~~~~~~~~~~~~-~~~p~-~~vP~L~~~~~~~l~eS~aI~~yL~~~~p 84 (84)
T cd03038 14 AFSPNVWKTRLALNHKGLEYKTVPVEFPDIPPILGEL-TSGGF-YTVPVIVDGSGEVIGDSFAIAEYLEEAYP 84 (84)
T ss_pred CcCChhHHHHHHHHhCCCCCeEEEecCCCcccccccc-cCCCC-ceeCeEEECCCCEEeCHHHHHHHHHHhCc
Confidence 679999999999999999999999886532 2334 78998 899999998 8999999999999999875
No 57
>COG0435 ECM4 Predicted glutathione S-transferase [Posttranslational modification, protein turnover, chaperones]
Probab=99.66 E-value=3.2e-16 Score=120.33 Aligned_cols=195 Identities=19% Similarity=0.281 Sum_probs=146.8
Q ss_pred eEEecccCChhhhHHHHHHHhhCCC----eeEEEcCCCCCh----------------------hHHHhhCCCC---Cccc
Q 027524 4 VKLHGGLLSPFNYRVVCALKLKGIP----FELIKEDLSNKS----------------------ALLLKYNPVH---KKIP 54 (222)
Q Consensus 4 ~~L~~~~~s~~~~~v~~~l~~~gi~----~~~~~v~~~~~~----------------------~~~~~~~p~~---g~vP 54 (222)
+.||..-.|||++|..++=+.+|++ ..++.-.+.... +-|....|.| -+||
T Consensus 52 YhLYvslaCPWAHRTLI~R~LkgLE~~Isvsvv~~~m~~~GW~F~~~~~g~t~dpl~g~~~L~~~Y~~adP~YsgRvTVP 131 (324)
T COG0435 52 YHLYVSLACPWAHRTLIFRALKGLEPVISVSVVHPLMDENGWTFDPEFPGATGDPLYGIERLSQLYTRADPDYSGRVTVP 131 (324)
T ss_pred EEEEEEecCchHHHHHHHHHHhcccccceEEEecccccCCCceEcCCCCCCCCCcccchhHHHHHHhhcCCCCCCceeEE
Confidence 6899999999999999999999985 222211111111 1122334432 1699
Q ss_pred EEEeC--C-eeeehhHHHHHHHHhhCC-----CCCCCCCCHHHHHHHHHHHHHHhhhc-chh-h-hhhcCHHHHHHHHHH
Q 027524 55 VLVHG--G-KPVCESMVILEYIEETWP-----QNPLMPSDPYDRAQARFWINFAENKG-AAV-W-KLFRSIEDQENTMKE 123 (222)
Q Consensus 55 ~L~~~--g-~~l~es~aI~~yL~~~~~-----~~~l~p~~~~~~a~~~~~~~~~~~~~-~~~-~-~~~~~~~~~~~~~~~ 123 (222)
+|-+. . .+=.||..|++-+...+. ...|+|.+. |.+++.+.+++.+.+ +.+ + .|-...+.-+++...
T Consensus 132 VLwDk~~~tIVnNES~eIirm~N~aFde~~~~~~dlyP~~L--r~eId~~n~~Iy~~vNNGVYk~GFA~tq~aYeea~~~ 209 (324)
T COG0435 132 VLWDKKTQTIVNNESAEIIRMFNSAFDEFGASAVDLYPEAL--RTEIDELNKWIYDTVNNGVYKAGFATTQEAYEEAVKK 209 (324)
T ss_pred EEEecCCCeeecCCcHHHHHHHHHHHHHHhhhccccCCHHH--HHHHHHHHhhhcccccCceeeecccchHHHHHHHHHH
Confidence 99873 3 444899999999887652 235788775 788999999988773 344 2 555667888999999
Q ss_pred HHHHHHHHHhcccCCCCccccCCCChhHHHHHHHHHHHHHH-HHhhcccccCCCCCchHHHHHHHhcccchhhccCCCh
Q 027524 124 ILEMLQIVEEHGLGEKKFFHGDKIGLVDIAFGSIVHWLQII-EDIVGVKLFESHKFPGLHAWLKNYKQVPVVEENLPSR 201 (222)
Q Consensus 124 ~~~~l~~l~e~~L~~~~~l~G~~~s~AD~~l~~~l~~~~~~-~~~~~~~~~~~~~~p~l~~w~~~~~~~p~~~~~~~~~ 201 (222)
+-+.|+.| |..|+++.|++|+++|-||+-+++.|-+++.. -.++.++.-...+||+|..|...+.+.|.|.++..-.
T Consensus 210 lF~~Ld~l-E~~L~~~ryl~Gd~lTEAD~RLftTlvRFD~VYvgHFKCN~~rI~dypnL~~yLr~LYq~pg~~~T~df~ 287 (324)
T COG0435 210 LFEALDKL-EQILSERRYLTGDQLTEADIRLFTTLVRFDPVYVGHFKCNLRRIRDYPNLWGYLRDLYQLPGFAETVDFD 287 (324)
T ss_pred HHHHHHHH-HHHhhcCeeeccccchHhhhhhhheeEeecceEEeeeecccchhhcCchHHHHHHHHhcCcccccccchh
Confidence 99999999 99999999999999999999999998888532 2234566555668999999999999999999988633
No 58
>cd03043 GST_N_1 GST_N family, unknown subfamily 1; composed of uncharacterized proteins, predominantly from bacteria, with similarity to GSTs. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains.
Probab=99.65 E-value=8.6e-16 Score=98.42 Aligned_cols=66 Identities=39% Similarity=0.597 Sum_probs=59.9
Q ss_pred cccCChhhhHHHHHHHhhCCCeeEEEcCCC--CChhHHHhhCCCCCcccEEEeCCeeeehhHHHHHHHH
Q 027524 8 GGLLSPFNYRVVCALKLKGIPFELIKEDLS--NKSALLLKYNPVHKKIPVLVHGGKPVCESMVILEYIE 74 (222)
Q Consensus 8 ~~~~s~~~~~v~~~l~~~gi~~~~~~v~~~--~~~~~~~~~~p~~g~vP~L~~~g~~l~es~aI~~yL~ 74 (222)
....|++|++++++|+++|++|+.+.++.. +..++|++.||. |++|+|+++|.+|+||.+|++||+
T Consensus 6 ~~~~s~~s~~v~~~L~~~gl~~e~~~v~~~~~~~~~~~~~~nP~-g~vP~L~~~g~~l~eS~aI~~YL~ 73 (73)
T cd03043 6 NKNYSSWSLRPWLLLKAAGIPFEEILVPLYTPDTRARILEFSPT-GKVPVLVDGGIVVWDSLAICEYLA 73 (73)
T ss_pred CCCCCHHHHHHHHHHHHcCCCCEEEEeCCCCccccHHHHhhCCC-CcCCEEEECCEEEEcHHHHHHHhC
Confidence 456799999999999999999999999875 356889999998 999999999999999999999984
No 59
>cd03190 GST_C_ECM4_like GST_C family, ECM4-like subfamily; composed of predominantly uncharacterized and taxonomically diverse proteins with similarity to the translation product of the Saccharomyces cerevisiae gene ECM4. ECM4, a gene of unknown function, is involved in cell surface biosynthesis and architecture. S. cerevisiae ECM4 mutants show increased amounts of the cell wall hexose, N-acetylglucosamine. More recently, global gene expression analysis shows that ECM4 is upregulated during genotoxic conditions and together with the expression profiles of 18 other genes could potentially differentiate between genotoxic and cytotoxic insults in yeast.
Probab=99.65 E-value=1.3e-15 Score=110.43 Aligned_cols=124 Identities=17% Similarity=0.281 Sum_probs=96.6
Q ss_pred HHHHHHHHHHHHhhh-cchhhhh--hcCHHHHHHHHHHHHHHHHHHHhcccCCCCccccCCCChhHHHHHHHHHHHHHHH
Q 027524 89 DRAQARFWINFAENK-GAAVWKL--FRSIEDQENTMKEILEMLQIVEEHGLGEKKFFHGDKIGLVDIAFGSIVHWLQIIE 165 (222)
Q Consensus 89 ~~a~~~~~~~~~~~~-~~~~~~~--~~~~~~~~~~~~~~~~~l~~l~e~~L~~~~~l~G~~~s~AD~~l~~~l~~~~~~~ 165 (222)
.|++++.|++|..+. .+.+... ..+++..+.....+.+.|+.| |+.|++++|++|+++|+||+++++.+.++....
T Consensus 4 ~~a~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~L-E~~L~~~~yl~Gd~~TlADi~l~~~l~~~~~~~ 82 (142)
T cd03190 4 LRSEIDELNEWIYDNINNGVYKAGFATTQEAYDEAVDELFEALDRL-EELLSDRRYLLGDRLTEADIRLFTTLIRFDAVY 82 (142)
T ss_pred HHHHHHHHHHHHHHHHhhHHHHHhhccCHHHHHHHHHHHHHHHHHH-HHHHccCCeeeCCCccHHHHHHHHHHHHHHHHh
Confidence 588899999999888 3433322 244566677889999999999 999998999999999999999999987764321
Q ss_pred -HhhcccccCCCCCchHHHHHHHhcccchhhccCCChHHHHHHHHHHHH
Q 027524 166 -DIVGVKLFESHKFPGLHAWLKNYKQVPVVEENLPSRDELLVFFKGRYE 213 (222)
Q Consensus 166 -~~~~~~~~~~~~~p~l~~w~~~~~~~p~~~~~~~~~~~~~~~~~~~~~ 213 (222)
..........+.||+|.+|++++.++|++++++.......+|++++++
T Consensus 83 ~~~~~~~~~~~~~~P~L~~w~~r~~~~P~~k~~~~~~~~~~~~~~~~~~ 131 (142)
T cd03190 83 VQHFKCNLKRIRDYPNLWNYLRRLYQNPGVAETTNFDHIKQHYYGSHFP 131 (142)
T ss_pred hhhcccccchhhhCchHHHHHHHHhcCchHhhhcCHHHHHHHHHhhcCC
Confidence 111111111348999999999999999999999988888888888754
No 60
>COG2999 GrxB Glutaredoxin 2 [Posttranslational modification, protein turnover, chaperones]
Probab=99.65 E-value=1.8e-15 Score=108.87 Aligned_cols=176 Identities=20% Similarity=0.251 Sum_probs=123.5
Q ss_pred eEEecccCChhhhHHHHHHHhhCCCeeEEEcCCCCChhHHHhhCCCCCcccEEE-eCCeeeehhHHHHHHHHhhCCCCCC
Q 027524 4 VKLHGGLLSPFNYRVVCALKLKGIPFELIKEDLSNKSALLLKYNPVHKKIPVLV-HGGKPVCESMVILEYIEETWPQNPL 82 (222)
Q Consensus 4 ~~L~~~~~s~~~~~v~~~l~~~gi~~~~~~v~~~~~~~~~~~~~p~~g~vP~L~-~~g~~l~es~aI~~yL~~~~~~~~l 82 (222)
|+||-+.+||||-|+|+++-++|||++.+....++....-.-+.. .+||+|+ +||..+.||..|+.|+++.++++-+
T Consensus 1 MkLYIYdHCPfcvrarmi~Gl~nipve~~vL~nDDe~Tp~rmiG~--KqVPiL~Kedg~~m~ESlDIV~y~d~~~~~~~l 78 (215)
T COG2999 1 MKLYIYDHCPFCVRARMIFGLKNIPVELHVLLNDDEETPIRMIGQ--KQVPILQKEDGRAMPESLDIVHYVDELDGKPLL 78 (215)
T ss_pred CceeEeccChHHHHHHHHhhccCCChhhheeccCcccChhhhhcc--cccceEEccccccchhhhHHHHHHHHhcCchhh
Confidence 689999999999999999999999999988765543333333333 5899998 5899999999999999999876433
Q ss_pred CCCCHHHHHHHHHHHHHHhhh-----cchhh-------------hhhcC------------HHHHHHHHHHHHHHHHHHH
Q 027524 83 MPSDPYDRAQARFWINFAENK-----GAAVW-------------KLFRS------------IEDQENTMKEILEMLQIVE 132 (222)
Q Consensus 83 ~p~~~~~~a~~~~~~~~~~~~-----~~~~~-------------~~~~~------------~~~~~~~~~~~~~~l~~l~ 132 (222)
-.. -+..+..|+.-++.. +|.+. .+|.. -++......++..-++.+
T Consensus 79 t~~---~~pai~~wlrkv~~y~nkll~PR~~k~~l~EF~T~sA~~yf~~KKe~s~g~F~~~l~~t~~~~~~i~~dl~~l- 154 (215)
T COG2999 79 TGK---VRPAIEAWLRKVNGYLNKLLLPRFAKSALPEFATPSARKYFTDKKEASEGSFESLLNHTAQYLKRIQADLRAL- 154 (215)
T ss_pred ccC---cCHHHHHHHHHhcchHhhhhhhhHhhcCCccccCHHHHHHHHhhhhhccccHHHHHhchHHHHHHHHHHHHHH-
Confidence 222 123344454444332 34332 11111 112345578888889999
Q ss_pred hcccCCCCccccCCCChhHHHHHHHHHHHHHHHHhhcccccCCCCCchHHHHHHHhcccchh
Q 027524 133 EHGLGEKKFFHGDKIGLVDIAFGSIVHWLQIIEDIVGVKLFESHKFPGLHAWLKNYKQVPVV 194 (222)
Q Consensus 133 e~~L~~~~~l~G~~~s~AD~~l~~~l~~~~~~~~~~~~~~~~~~~~p~l~~w~~~~~~~p~~ 194 (222)
+..+.+..-+-| .+|.-|+.+|++|..+-.. .|..|. .++..|..+|.+...+
T Consensus 155 ~~Li~~~s~~n~-~l~~ddi~vFplLRnlt~v---~gi~wp-----s~v~dy~~~msektqV 207 (215)
T COG2999 155 DKLIVGPSAVNG-ELSEDDILVFPLLRNLTLV---AGIQWP-----SRVADYRDNMSEKTQV 207 (215)
T ss_pred HHHhcCcchhcc-ccchhhhhhhHHhccceec---ccCCCc-----HHHHHHHHHHHHhhCc
Confidence 888877664544 5999999999999988332 254443 5899999999876544
No 61
>KOG4244 consensus Failed axon connections (fax) protein/glutathione S-transferase-like protein [Signal transduction mechanisms]
Probab=99.63 E-value=3e-15 Score=114.58 Aligned_cols=173 Identities=22% Similarity=0.307 Sum_probs=125.5
Q ss_pred eEEeccc-------CChhhhHHHHHHHhhCCCeeEEEcCCCCChhHHHhhCCCCCcccEEEeCCeeeehhHHHHHHHHhh
Q 027524 4 VKLHGGL-------LSPFNYRVVCALKLKGIPFELIKEDLSNKSALLLKYNPVHKKIPVLVHGGKPVCESMVILEYIEET 76 (222)
Q Consensus 4 ~~L~~~~-------~s~~~~~v~~~l~~~gi~~~~~~v~~~~~~~~~~~~~p~~g~vP~L~~~g~~l~es~aI~~yL~~~ 76 (222)
+-||.|+ .||||+++-.+|...+|||+.+...+. ..+.. |++|.++.||..+.+|..|..+|.+.
T Consensus 46 VYLyQF~R~~~~PnLSPfClKvEt~lR~~~IpYE~~~~~~~-------~rSr~-G~lPFIELNGe~iaDS~~I~~~L~~h 117 (281)
T KOG4244|consen 46 VYLYQFPRTKTCPNLSPFCLKVETFLRAYDIPYEIVDCSLK-------RRSRN-GTLPFIELNGEHIADSDLIEDRLRKH 117 (281)
T ss_pred EEEEeccccCCCCCCChHHHHHHHHHHHhCCCceeccccce-------eeccC-CCcceEEeCCeeccccHHHHHHHHHH
Confidence 4566663 599999999999999999999976542 23454 99999999999999999999999998
Q ss_pred CCCCCCCCCCHHHHHHHHHHHHHHhhh-cchh-h---------------------------hhh-c---CH---------
Q 027524 77 WPQNPLMPSDPYDRAQARFWINFAENK-GAAV-W---------------------------KLF-R---SI--------- 114 (222)
Q Consensus 77 ~~~~~l~p~~~~~~a~~~~~~~~~~~~-~~~~-~---------------------------~~~-~---~~--------- 114 (222)
+.-+.. -++.++++.+.+..+++.. +-.+ + .++ . ..
T Consensus 118 f~~~~~--L~~e~~a~s~Al~rm~dnhL~~~l~y~k~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~f~~kv~~r~~g~ 195 (281)
T KOG4244|consen 118 FKIPDD--LSAEQRAQSRALSRMADNHLFWILLYYKGADDAWLNTDRKLIGLPGFLFPLLLPLFWKAIFGKKVYKRSTGA 195 (281)
T ss_pred cCCCCC--CCHHHHHHHHHHHHHHHHHHHHHHHHhhhcchHHHHHHHhccCccccchHHHHHHHHHHHHHHHHHHHhhcc
Confidence 863332 3556677777666555433 0000 0 000 0 00
Q ss_pred ---HHHHHHHHHHHHHHHHHHhcccCCCCccccCCCChhHHHHHHHHHHHHHHHHhhcccc--cCCCCCchHHHHHHHhc
Q 027524 115 ---EDQENTMKEILEMLQIVEEHGLGEKKFFHGDKIGLVDIAFGSIVHWLQIIEDIVGVKL--FESHKFPGLHAWLKNYK 189 (222)
Q Consensus 115 ---~~~~~~~~~~~~~l~~l~e~~L~~~~~l~G~~~s~AD~~l~~~l~~~~~~~~~~~~~~--~~~~~~p~l~~w~~~~~ 189 (222)
=..++....+.+-|..+ +..|++.+||+|+++|-+|+.+++.|..+.. +. ..++ +-.+++|+|.+|++|++
T Consensus 196 IG~f~~~Ei~ell~rDlr~i-~~~Lg~KkflfGdkit~~DatvFgqLa~v~Y--P~-~~~i~d~le~d~p~l~eYceRIr 271 (281)
T KOG4244|consen 196 IGDFESAEIDELLHRDLRAI-SDYLGDKKFLFGDKITPADATVFGQLAQVYY--PF-RSHISDLLEGDFPNLLEYCERIR 271 (281)
T ss_pred ccCcCHHHHHHHHHHHHHHH-HHHhCCCccccCCCCCcceeeehhhhhheec--cC-CCcHHHHHhhhchHHHHHHHHHH
Confidence 01234566678888999 9999999999999999999999998877744 21 2221 11578999999999998
Q ss_pred c
Q 027524 190 Q 190 (222)
Q Consensus 190 ~ 190 (222)
+
T Consensus 272 ~ 272 (281)
T KOG4244|consen 272 K 272 (281)
T ss_pred H
Confidence 7
No 62
>cd00570 GST_N_family Glutathione S-transferase (GST) family, N-terminal domain; a large, diverse group of cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. In addition, GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. This family, also referred to as soluble GSTs, is the largest family of GSH transferases and is only distantly related to the mitochondrial GSTs (GSTK subfamily, a member of the DsbA family). Soluble GSTs bear no structural similarity to microsomal GSTs (MAPEG family) and display additional activities unique to their group, such as catalyzing thiolysis, reduction and isomerization of certain compounds. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical doma
Probab=99.63 E-value=1.7e-15 Score=95.80 Aligned_cols=70 Identities=43% Similarity=0.602 Sum_probs=63.0
Q ss_pred eEEecccCChhhhHHHHHHHhhCCCeeEEEcCCCCChh-HHHhhCCCCCcccEEEeCCeeeehhHHHHHHHH
Q 027524 4 VKLHGGLLSPFNYRVVCALKLKGIPFELIKEDLSNKSA-LLLKYNPVHKKIPVLVHGGKPVCESMVILEYIE 74 (222)
Q Consensus 4 ~~L~~~~~s~~~~~v~~~l~~~gi~~~~~~v~~~~~~~-~~~~~~p~~g~vP~L~~~g~~l~es~aI~~yL~ 74 (222)
++||+++.||+|++++++|+++|++|+.+.++...... ++...+|. +++|+|.++|..++||.+|++||+
T Consensus 1 ~~ly~~~~~~~~~~~~~~l~~~~i~~~~~~~~~~~~~~~~~~~~~~~-~~~P~l~~~~~~~~es~~I~~yl~ 71 (71)
T cd00570 1 LKLYYFPGSPRSLRVRLALEEKGLPYELVPVDLGEGEQEEFLALNPL-GKVPVLEDGGLVLTESLAILEYLA 71 (71)
T ss_pred CEEEeCCCCccHHHHHHHHHHcCCCcEEEEeCCCCCCCHHHHhcCCC-CCCCEEEECCEEEEcHHHHHHHhC
Confidence 58999999999999999999999999999998763322 58889998 899999999999999999999984
No 63
>cd03186 GST_C_SspA GST_N family, Stringent starvation protein A (SspA) subfamily; SspA is a RNA polymerase (RNAP)-associated protein required for the lytic development of phage P1 and for stationary phase-induced acid tolerance of E. coli. It is implicated in survival during nutrient starvation. SspA adopts the GST fold with an N-terminal thioredoxin-fold domain and a C-terminal alpha helical domain, but it does not bind glutathione (GSH) and lacks GST activity. SspA is highly conserved among gram-negative bacteria. Related proteins found in Neisseria (called RegF), Francisella and Vibrio regulate the expression of virulence factors necessary for pathogenesis.
Probab=99.62 E-value=4.8e-15 Score=102.13 Aligned_cols=103 Identities=19% Similarity=0.279 Sum_probs=82.6
Q ss_pred HHHHHHHHHHHHHhhh-cchhhhhh-cCHHHHHHHHHHHHHHHHHHHhcccCCCCccccCCCChhHHHHHHHHHHHHHHH
Q 027524 88 YDRAQARFWINFAENK-GAAVWKLF-RSIEDQENTMKEILEMLQIVEEHGLGEKKFFHGDKIGLVDIAFGSIVHWLQIIE 165 (222)
Q Consensus 88 ~~~a~~~~~~~~~~~~-~~~~~~~~-~~~~~~~~~~~~~~~~l~~l~e~~L~~~~~l~G~~~s~AD~~l~~~l~~~~~~~ 165 (222)
.+|++++.|+.+++.. .+.+..+. ..++..+.....+.+.+..| |..|++++|++|+++|+||+++++.+.+...
T Consensus 2 ~~ra~~r~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l-e~~L~~~~~l~G~~~t~aDi~~~~~~~~~~~-- 78 (107)
T cd03186 2 VARARSRLLMHRIEQDWYPLVDTIEKGRKKEAEKARKELRESLLAL-APVFAHKPYFMSEEFSLVDCALAPLLWRLPA-- 78 (107)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHH-HHHHcCCCcccCCCCcHHHHHHHHHHHHHHH--
Confidence 5799999999999886 44443332 22555667888999999999 9999999999999999999999998865532
Q ss_pred HhhcccccCCCCCchHHHHHHHhcccchhhcc
Q 027524 166 DIVGVKLFESHKFPGLHAWLKNYKQVPVVEEN 197 (222)
Q Consensus 166 ~~~~~~~~~~~~~p~l~~w~~~~~~~p~~~~~ 197 (222)
.|.+.. ..+|++.+|++++.++|+++.+
T Consensus 79 --~~~~~~--~~~p~l~~w~~~~~~rpa~~~~ 106 (107)
T cd03186 79 --LGIELP--KQAKPLKDYMERVFARDSFQKS 106 (107)
T ss_pred --cCCCCc--ccchHHHHHHHHHHCCHHHHHh
Confidence 254432 4799999999999999999875
No 64
>cd03054 GST_N_Metaxin GST_N family, Metaxin subfamily; composed of metaxins and related proteins. Metaxin 1 is a component of a preprotein import complex of the mitochondrial outer membrane. It extends to the cytosol and is anchored to the mitochondrial membrane through its C-terminal domain. In mice, metaxin is required for embryonic development. In humans, alterations in the metaxin gene may be associated with Gaucher disease. Metaxin 2 binds to metaxin 1 and may also play a role in protein translocation into the mitochondria. Genome sequencing shows that a third metaxin gene also exists in zebrafish, Xenopus, chicken and mammals. Sequence analysis suggests that all three metaxins share a common ancestry and that they possess similarity to GSTs. Also included in the subfamily are uncharacterized proteins with similarity to metaxins, including a novel GST from Rhodococcus with toluene o-monooxygenase and glutamylcysteine synthetase activities.
Probab=99.60 E-value=3.8e-15 Score=95.18 Aligned_cols=65 Identities=29% Similarity=0.475 Sum_probs=57.9
Q ss_pred eEEeccc-------CChhhhHHHHHHHhhCCCeeEEEcCCCCChhHHHhhCCCCCcccEEEeCCeeeehhHHHHHHHHhh
Q 027524 4 VKLHGGL-------LSPFNYRVVCALKLKGIPFELIKEDLSNKSALLLKYNPVHKKIPVLVHGGKPVCESMVILEYIEET 76 (222)
Q Consensus 4 ~~L~~~~-------~s~~~~~v~~~l~~~gi~~~~~~v~~~~~~~~~~~~~p~~g~vP~L~~~g~~l~es~aI~~yL~~~ 76 (222)
++||.++ .||+|++++++|+++||||+.+.++... .||. |++|+|+++|..+.||.+|++||+++
T Consensus 1 ~~L~~~~~~~~~~s~sp~~~~v~~~L~~~~i~~~~~~~~~~~-------~~p~-g~vP~l~~~g~~l~es~~I~~yL~~~ 72 (72)
T cd03054 1 LELYQWGRAFGLPSLSPECLKVETYLRMAGIPYEVVFSSNPW-------RSPT-GKLPFLELNGEKIADSEKIIEYLKKK 72 (72)
T ss_pred CEEEEeCCCCCCCCCCHHHHHHHHHHHhCCCceEEEecCCcc-------cCCC-cccCEEEECCEEEcCHHHHHHHHhhC
Confidence 3577666 8999999999999999999999987532 7898 89999999999999999999999874
No 65
>cd03196 GST_C_5 GST_C family, unknown subfamily 5; composed of uncharacterized bacterial proteins with similarity to GSTs. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins, and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal thioredoxin-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. GSH binds to the N-terminal domain while the hydrophobic substrate occupies a pocket in the C-terminal domain.
Probab=99.59 E-value=8.9e-15 Score=102.14 Aligned_cols=108 Identities=21% Similarity=0.314 Sum_probs=83.8
Q ss_pred CCHHHHHHHHHHHHHHhhh-cchhhhh----hcCHHHHHHHHHHHHHHHHHHHhcccCCCCccccCCCChhHHHHHHHHH
Q 027524 85 SDPYDRAQARFWINFAENK-GAAVWKL----FRSIEDQENTMKEILEMLQIVEEHGLGEKKFFHGDKIGLVDIAFGSIVH 159 (222)
Q Consensus 85 ~~~~~~a~~~~~~~~~~~~-~~~~~~~----~~~~~~~~~~~~~~~~~l~~l~e~~L~~~~~l~G~~~s~AD~~l~~~l~ 159 (222)
.++.+++++++|+.+.+.. .+.+... ..+.+..+.....+.+.++.| |..|++++|++|+++|+||+++++.+.
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~l-e~~L~~~~yl~Gd~~tlADi~l~~~l~ 80 (115)
T cd03196 2 QDPAALKEMLALIAENDNEFKHHLDRYKYADRYPEESEEEYRQQAEAFLKDL-EARLQQHSYLLGDKPSLADWAIFPFVR 80 (115)
T ss_pred CchHHHHHHHHHHHHcchhhHHHHHhccchhhcCcccHHHHHHHHHHHHHHH-HHHHccCCccCCCCccHHHHHHHHHHH
Confidence 3688999999999998877 3333321 111224667888999999999 999998899999999999999999887
Q ss_pred HHHHHHHhhcccccCCCCCchHHHHHHHhcccchhhcc
Q 027524 160 WLQIIEDIVGVKLFESHKFPGLHAWLKNYKQVPVVEEN 197 (222)
Q Consensus 160 ~~~~~~~~~~~~~~~~~~~p~l~~w~~~~~~~p~~~~~ 197 (222)
++... ....++..++|+|.+|++++.++|+++++
T Consensus 81 ~~~~~----~~~~~~~~~~P~L~~w~~r~~~rpa~~~~ 114 (115)
T cd03196 81 QFAHV----DPKWFDQSPYPRLRRWLNGFLASPLFSKI 114 (115)
T ss_pred HHHHh----hhcccCcccCHHHHHHHHHHHcChHHHhh
Confidence 66432 11112246899999999999999999975
No 66
>cd03188 GST_C_Beta GST_C family, Class Beta subfamily; GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins, and products of oxidative stress. The GST fold contains an N-terminal thioredoxin-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. GSH binds to the N-terminal domain while the hydrophobic substrate occupies a pocket in the C-terminal domain. Unlike mammalian GSTs which detoxify a broad range of compounds, the bacterial class Beta GSTs exhibit limited GSH conjugating activity with a narrow range of substrates. In addition to GSH conjugation, they also bind antibiotics and reduce the antimicrobial activity of beta-lactam drugs. The structure of the Proteus mirabilis enzyme reveals that the cysteine in the active site for
Probab=99.57 E-value=1.4e-14 Score=100.74 Aligned_cols=102 Identities=23% Similarity=0.431 Sum_probs=79.5
Q ss_pred HHHHHHHHHHHHhhh-cchhhhhh------c----CHHHHHHHHHHHHHHHHHHHhcccCCCCccccCCCChhHHHHHHH
Q 027524 89 DRAQARFWINFAENK-GAAVWKLF------R----SIEDQENTMKEILEMLQIVEEHGLGEKKFFHGDKIGLVDIAFGSI 157 (222)
Q Consensus 89 ~~a~~~~~~~~~~~~-~~~~~~~~------~----~~~~~~~~~~~~~~~l~~l~e~~L~~~~~l~G~~~s~AD~~l~~~ 157 (222)
+|+++++|+.+.++. .+.+.... . .+...+.....+.+.++.+ |+.|++++|++|+++|+||+++++.
T Consensus 2 ~ra~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l-e~~l~~~~~l~G~~~t~aDi~~~~~ 80 (114)
T cd03188 2 ERARLLEWLNFLSSELHKAFGPLFYPARWATDEAAQEEVKAAARERLAARLAYL-DAQLAGGPYLLGDRFSVADAYLFVV 80 (114)
T ss_pred cHHHHHHHHHHHhhhhchhhhhcccccccccChhhHHHHHHHHHHHHHHHHHHH-HHHhcCCCeeeCCCcchHHHHHHHH
Confidence 588999999999776 44443111 1 1233456778899999999 9999988999999999999999999
Q ss_pred HHHHHHHHHhhcccccCCCCCchHHHHHHHhcccchhhccC
Q 027524 158 VHWLQIIEDIVGVKLFESHKFPGLHAWLKNYKQVPVVEENL 198 (222)
Q Consensus 158 l~~~~~~~~~~~~~~~~~~~~p~l~~w~~~~~~~p~~~~~~ 198 (222)
+.++... +. +.+++|+|.+|++++.++|++++++
T Consensus 81 ~~~~~~~----~~---~~~~~p~l~~w~~~~~~~p~~k~~~ 114 (114)
T cd03188 81 LRWAPGV----GL---DLSDWPNLAAYLARVAARPAVQAAL 114 (114)
T ss_pred HHHHhhc----CC---ChhhChHHHHHHHHHHhCHHhHhhC
Confidence 8876432 32 2348999999999999999999763
No 67
>KOG2903 consensus Predicted glutathione S-transferase [Posttranslational modification, protein turnover, chaperones]
Probab=99.57 E-value=6e-15 Score=112.41 Aligned_cols=193 Identities=23% Similarity=0.299 Sum_probs=140.4
Q ss_pred eEEecccCChhhhHHHHHHHhhCCC----eeEEEcCCCCChhH------------------------------HHhhCCC
Q 027524 4 VKLHGGLLSPFNYRVVCALKLKGIP----FELIKEDLSNKSAL------------------------------LLKYNPV 49 (222)
Q Consensus 4 ~~L~~~~~s~~~~~v~~~l~~~gi~----~~~~~v~~~~~~~~------------------------------~~~~~p~ 49 (222)
+.||..-.|||++|+.+..+.+|++ +..+.--.+++... |...+|.
T Consensus 38 yhLYvslaCPWAhRtLi~r~LKGL~~~i~~s~v~~~~d~~gW~F~~~~~~~nDs~~l~~~~d~~~g~k~l~elY~~~~p~ 117 (319)
T KOG2903|consen 38 YHLYVSLACPWAHRTLIVRALKGLEPAIGVSVVHWHLDDKGWRFLDEHIIINDSERLGVTPDPLNGAKRLRELYYIASPN 117 (319)
T ss_pred EEEEEeccCcHHHHHHHHHHHcCccccceeEEeccccCCCcccCCCcccCCCchhcccCCCcccccchhHHHHHhhcCCC
Confidence 6799999999999999999999985 22221101111111 1122332
Q ss_pred C---CcccEEEe---CCeeeehhHHHHHHHHhh---------CCCCCCCCCCHHHHHHHHHHHHHHhhhc-chhh--hhh
Q 027524 50 H---KKIPVLVH---GGKPVCESMVILEYIEET---------WPQNPLMPSDPYDRAQARFWINFAENKG-AAVW--KLF 111 (222)
Q Consensus 50 ~---g~vP~L~~---~g~~l~es~aI~~yL~~~---------~~~~~l~p~~~~~~a~~~~~~~~~~~~~-~~~~--~~~ 111 (222)
+ -+||+|=| ...+-.||..|++.+... .+.-.|+|.+. +++++.+.+|+.+.+ ..+. .|-
T Consensus 118 Y~grfTVPVLWD~k~ktIVnNES~eIIr~fNs~f~ef~~~~e~~~lDL~P~~L--~~~Ide~N~wvy~~INNGVYk~GFA 195 (319)
T KOG2903|consen 118 YTGRFTVPVLWDLKTKTIVNNESSEIIRMFNSAFDEFNGIAENPVLDLYPSSL--RAQIDETNSWVYDKINNGVYKCGFA 195 (319)
T ss_pred CCceEEEEEEEccccceeecCchHHHHHHHhhhhhhhhccccCCccccCCHHH--HHHHhhhhceecccccCceeeeccc
Confidence 1 16999976 345568999999999932 23334777765 788999999988773 3442 566
Q ss_pred cCHHHHHHHHHHHHHHHHHHHhcccCCCC--ccccCCCChhHHHHHHHHHHHHHH-HHhhcccccC-CCCCchHHHHHHH
Q 027524 112 RSIEDQENTMKEILEMLQIVEEHGLGEKK--FFHGDKIGLVDIAFGSIVHWLQII-EDIVGVKLFE-SHKFPGLHAWLKN 187 (222)
Q Consensus 112 ~~~~~~~~~~~~~~~~l~~l~e~~L~~~~--~l~G~~~s~AD~~l~~~l~~~~~~-~~~~~~~~~~-~~~~p~l~~w~~~ 187 (222)
...+.-+.....+-+.|+.+ |..|+++. |++|+++|-||+.+++.+-+++.. .-++.++.-. +.+||+|..|...
T Consensus 196 ~~~e~Ye~~V~~lfe~LDr~-E~vL~~~~~~f~~G~~LTeaDirLy~TiIRFD~VY~~hFKCn~~~ir~~Yp~l~~~lk~ 274 (319)
T KOG2903|consen 196 EKQEAYEEEVNQLFEALDRC-EDVLGKNRKYFLCGDTLTEADIRLYTTIIRFDEVYVQHFKCNKKTIRDEYPNLHNWLKN 274 (319)
T ss_pred cccchHHHHHHHHHHHHHHH-HHHHhcccceEeeccccchhheeeeeeEEeehhhhheeeecchhhhhccCcHHHHHHHH
Confidence 66778888899999999999 99998776 999999999999999988887432 2223443322 4599999999999
Q ss_pred hcc-cchhhccCC
Q 027524 188 YKQ-VPVVEENLP 199 (222)
Q Consensus 188 ~~~-~p~~~~~~~ 199 (222)
+.+ .|++..+..
T Consensus 275 iY~~~~~~~~Ttd 287 (319)
T KOG2903|consen 275 IYWNIPGFSSTTD 287 (319)
T ss_pred HHhhccchhhccc
Confidence 999 899998875
No 68
>cd03203 GST_C_Lambda GST_C family, Class Lambda subfamily; composed of plant-specific class Lambda GSTs. GSTs are cytosolic, usually dimeric, proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins, and products of oxidative stress. The GST fold contains an N-terminal thioredoxin-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. GSH binds to the N-terminal domain while the hydrophobic substrate occupies a pocket in the C-terminal domain. The class Lambda subfamily was recently discovered, together with dehydroascorbate reductases (DHARs), as two outlying groups of the GST superfamily in Arabidopsis thaliana, which contain conserved active site cysteines. Characterization of recombinant A. thaliana proteins show that Lambda class GSTs are monomeric, similar
Probab=99.55 E-value=2.3e-14 Score=100.81 Aligned_cols=114 Identities=24% Similarity=0.443 Sum_probs=79.9
Q ss_pred CHHHHHHHHHHHHHHhhhcchhh-hhhcCHHHHHHHHHHHHHHHHHHHhcccC---CCCccccCCCChhHHHHHHHHHHH
Q 027524 86 DPYDRAQARFWINFAENKGAAVW-KLFRSIEDQENTMKEILEMLQIVEEHGLG---EKKFFHGDKIGLVDIAFGSIVHWL 161 (222)
Q Consensus 86 ~~~~~a~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~l~~l~e~~L~---~~~~l~G~~~s~AD~~l~~~l~~~ 161 (222)
|+.+|+++++++.+.......+. .++.... ...+.+.++.| |+.|+ +++|++| ++|+||+++++.+.++
T Consensus 1 d~~~ra~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~l~~L-e~~L~~~~~~~fl~G-~~tlADi~l~~~~~~~ 73 (120)
T cd03203 1 DPAKREFADELLAYTDAFTKALYSSLIKGDP-----SAEAAAALDYI-ENALSKFDDGPFFLG-QFSLVDIAYVPFIERF 73 (120)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHhcCCc-----hHHHHHHHHHH-HHHHHhcCCCCCcCC-CccHHHHHHHHHHHHH
Confidence 46789999999988322222221 2222211 22345567777 66665 5799999 9999999999999877
Q ss_pred HHH-HHhhcccccCCCCCchHHHHHHHhcccchhhccCCChHHHHHHH
Q 027524 162 QII-EDIVGVKLFESHKFPGLHAWLKNYKQVPVVEENLPSRDELLVFF 208 (222)
Q Consensus 162 ~~~-~~~~~~~~~~~~~~p~l~~w~~~~~~~p~~~~~~~~~~~~~~~~ 208 (222)
... ....|.++ .+++|+|.+|++++.++|+++++.++.+++..++
T Consensus 74 ~~~~~~~~~~~~--~~~~P~l~~W~~~~~~rp~~~~~~~~~~~~~~~~ 119 (120)
T cd03203 74 QIFLSELFNYDI--TEGRPNLAAWIEEMNKIEAYTQTKQDPQELLDLA 119 (120)
T ss_pred HHHHHHhcCccc--cccCcHHHHHHHHHhcchHHHhHcCCHHHHHhhh
Confidence 542 22235544 3589999999999999999999999888776654
No 69
>cd03209 GST_C_Mu GST_C family, Class Mu subfamily; GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins, and products of oxidative stress. The GST fold contains an N-terminal thioredoxin-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. GSH binds to the N-terminal domain while the hydrophobic substrate occupies a pocket in the C-terminal domain. The class Mu subfamily is composed of eukaryotic GSTs. In rats, at least six distinct class Mu subunits have been identified, with homologous genes in humans for five of these subunits. Class Mu GSTs can form homodimers and heterodimers, giving a large number of possible isoenzymes that can be formed, all with overlapping activities but different substrate specificities. They are the m
Probab=99.53 E-value=5.7e-14 Score=98.98 Aligned_cols=108 Identities=18% Similarity=0.334 Sum_probs=84.1
Q ss_pred HHHHHHHHHHHHhhhcchhhhh-hcC--HHHHHHHHHHHHHHHHHHHhcccCCCCccccCCCChhHHHHHHHHHHHHHHH
Q 027524 89 DRAQARFWINFAENKGAAVWKL-FRS--IEDQENTMKEILEMLQIVEEHGLGEKKFFHGDKIGLVDIAFGSIVHWLQIIE 165 (222)
Q Consensus 89 ~~a~~~~~~~~~~~~~~~~~~~-~~~--~~~~~~~~~~~~~~l~~l~e~~L~~~~~l~G~~~s~AD~~l~~~l~~~~~~~ 165 (222)
++++++++++.+.+....+..+ +.+ ....+.....+.+.++.| |..|++++|++|+++|+||+++++++.++...
T Consensus 2 e~~~id~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l-e~~L~~~~~l~G~~~T~aDi~l~~~~~~~~~~- 79 (121)
T cd03209 2 ERIRVDMLEQQAMDLRMGLARICYSPDFEKLKPDYLAKLPDKLKLF-SDFLGDRPWFAGDKITYVDFLLYEALDQHRIF- 79 (121)
T ss_pred chHHHHHHHHHHHHHHHHHHHhhcCcchHHHHHHHHHHHHHHHHHH-HHHhCCCCCcCCCCccHHHHHHHHHHHHHHHh-
Confidence 5788888888888775544322 221 334455677889999999 99999889999999999999999999888543
Q ss_pred HhhcccccCCCCCchHHHHHHHhcccchhhccCCChHH
Q 027524 166 DIVGVKLFESHKFPGLHAWLKNYKQVPVVEENLPSRDE 203 (222)
Q Consensus 166 ~~~~~~~~~~~~~p~l~~w~~~~~~~p~~~~~~~~~~~ 203 (222)
+... .+.+|+|.+|++++.++|++++++++.+.
T Consensus 80 ---~~~~--~~~~P~l~~~~~rv~~~p~vk~~~~~~~~ 112 (121)
T cd03209 80 ---EPDC--LDAFPNLKDFLERFEALPKISAYMKSDRF 112 (121)
T ss_pred ---Cccc--cccChHHHHHHHHHHHCHHHHHHHhcccC
Confidence 2222 34899999999999999999999876643
No 70
>cd03198 GST_C_CLIC GST_C family, Chloride Intracellular Channel (CLIC) subfamily; composed of CLIC1-5, p64, parchorin, and similar proteins. They are auto-inserting, self-assembling intracellular anion channels involved in a wide variety of functions including regulated secretion, cell division, and apoptosis. They can exist in both water-soluble and membrane-bound states and are found in various vesicles and membranes. Biochemical studies of the C. elegans homolog, EXC-4, show that the membrane localization domain is present in the N-terminal part of the protein. The structure of soluble human CLIC1 reveals that it is monomeric and adopts a fold similar to GSTs, containing an N-terminal domain with a thioredoxin fold and a C-terminal alpha helical domain. Upon oxidation, the N-terminal domain of CLIC1 undergoes a structural change to form a non-covalent dimer stabilized by the formation of an intramolecular disulfide bond between two cysteines that are far apart in the reduced form. T
Probab=99.53 E-value=1e-13 Score=98.39 Aligned_cols=101 Identities=22% Similarity=0.325 Sum_probs=80.1
Q ss_pred cchhhhhhcC--HHHHHHHHHHHHHHHHHHHhcccCC----------------CCccccCCCChhHHHHHHHHHHHHHHH
Q 027524 104 GAAVWKLFRS--IEDQENTMKEILEMLQIVEEHGLGE----------------KKFFHGDKIGLVDIAFGSIVHWLQIIE 165 (222)
Q Consensus 104 ~~~~~~~~~~--~~~~~~~~~~~~~~l~~l~e~~L~~----------------~~~l~G~~~s~AD~~l~~~l~~~~~~~ 165 (222)
++.+..+..+ ++..+...+.+.+.|..| |.+|++ ++|++|+++|+|||++++.+.++....
T Consensus 12 f~~~~~~~~~~~~~~~e~~~~~l~~~L~~l-d~~L~~~~~~~~~~~~~~~~~~~~fL~Gd~fTlADi~l~p~L~~~~~~~ 90 (134)
T cd03198 12 FAKFSAYIKNSNPALNENLEKGLLKALKKL-DDYLNSPLPDEIDSAEDEGVSQRKFLDGDELTLADCNLLPKLHIVKVVA 90 (134)
T ss_pred HHHHHHHHcCCChhhhHHHHHHHHHHHHHH-HHHHccCccccccccccccccCCCCCCCCCCCHHHHHHHHHHHHHHHHH
Confidence 5555555543 466677888999999999 999976 679999999999999999988875432
Q ss_pred H-hhcccccCCCCCchHHHHHHHhcccchhhccCCChHHHHHH
Q 027524 166 D-IVGVKLFESHKFPGLHAWLKNYKQVPVVEENLPSRDELLVF 207 (222)
Q Consensus 166 ~-~~~~~~~~~~~~p~l~~w~~~~~~~p~~~~~~~~~~~~~~~ 207 (222)
. ..+..+ .+.+|+|.+|++++.+||+|++++...+++...
T Consensus 91 ~~~~g~~i--~~~~P~L~aw~~ri~aRPsfk~t~~~~~~i~~~ 131 (134)
T cd03198 91 KKYRNFEI--PADLTGLWRYLKNAYQREEFTNTCPADQEIELA 131 (134)
T ss_pred HhhcCCCc--cccCHHHHHHHHHHHCCHHHHHHcCCHHHHHHH
Confidence 2 124443 368999999999999999999999988776654
No 71
>cd03182 GST_C_GTT2_like GST_C family, Saccharomyces cerevisiae GTT2-like subfamily; composed of predominantly uncharacterized proteins with similarity to the S. cerevisiae GST protein, GTT2. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins, and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal thioredoxin-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. GSH binds to the N-terminal domain while the hydrophobic substrate occupies a pocket in the C-terminal domain. GTT2, a homodimer, exhibits GST activity with standard substrates. Strains with deleted GTT2 genes are viable but exhibit increased sensiti
Probab=99.51 E-value=1.9e-13 Score=95.59 Aligned_cols=102 Identities=19% Similarity=0.325 Sum_probs=80.0
Q ss_pred CHHHHHHHHHHHHHHhhh-cchhh-hh-----h--------cCHHHHHHHHHHHHHHHHHHHhcccCCCCccccCCCChh
Q 027524 86 DPYDRAQARFWINFAENK-GAAVW-KL-----F--------RSIEDQENTMKEILEMLQIVEEHGLGEKKFFHGDKIGLV 150 (222)
Q Consensus 86 ~~~~~a~~~~~~~~~~~~-~~~~~-~~-----~--------~~~~~~~~~~~~~~~~l~~l~e~~L~~~~~l~G~~~s~A 150 (222)
|+.+|+++++|+.+++.. .+.+. .+ . .+.+..+.....+.+.|+.| |+.|++++|++|+++|+|
T Consensus 1 d~~~ra~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~l-e~~L~~~~~l~gd~~t~a 79 (117)
T cd03182 1 TPLERAQIEMWQRRAELQGLYPIGQAFRHATPGLKPPDREEQVPEWGERSKARAADFLAYL-DTRLAGSPYVAGDRFTIA 79 (117)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCccccCccccccCHHHHHHHHHHHHHHHHHH-HHHhcCCCcccCCCCCHH
Confidence 467899999999998766 43332 11 0 12344567788899999999 999998899999999999
Q ss_pred HHHHHHHHHHHHHHHHhhcccccCCCCCchHHHHHHHhcccchh
Q 027524 151 DIAFGSIVHWLQIIEDIVGVKLFESHKFPGLHAWLKNYKQVPVV 194 (222)
Q Consensus 151 D~~l~~~l~~~~~~~~~~~~~~~~~~~~p~l~~w~~~~~~~p~~ 194 (222)
|+++++.+.+.... +.++ ...+|+|.+|++++.++|++
T Consensus 80 Di~l~~~~~~~~~~----~~~~--~~~~p~l~~w~~~~~~~p~~ 117 (117)
T cd03182 80 DITAFVGLDFAKVV----KLRV--PEELTHLRAWYDRMAARPSA 117 (117)
T ss_pred HHHHHHHhHHHHhc----CCCC--ccccHHHHHHHHHHHhccCC
Confidence 99999999887543 4443 35899999999999999974
No 72
>cd03201 GST_C_DHAR GST_C family, Dehydroascorbate Reductase (DHAR) subfamily; composed of plant-specific DHARs, monomeric enzymes catalyzing the reduction of DHA into ascorbic acid (AsA) using glutathione as the reductant. DHAR allows plants to recycle oxidized AsA before it is lost. AsA serves as a cofactor of violaxanthin de-epoxidase in the xanthophyll cycle and as an antioxidant in the detoxification of reactive oxygen species. Because AsA is the major reductant in plants, DHAR serves to regulate their redox state. It has been suggested that a significant portion of DHAR activity is plastidic, acting to reduce the large amounts of ascorbate oxidized during hydrogen peroxide scavenging by ascorbate peroxidase. DHAR contains a conserved cysteine in its active site and in addition to its reductase activity, shows thiol transferase activity similar to glutaredoxins.
Probab=99.50 E-value=1.9e-13 Score=96.17 Aligned_cols=100 Identities=16% Similarity=0.307 Sum_probs=76.2
Q ss_pred cchhhhhhcCHHHHHHHHHHHHHHHHHHHhcccCC-CCccccCCCChhHHHHHHHHHHHHHHHH-hhcccccCCCCCchH
Q 027524 104 GAAVWKLFRSIEDQENTMKEILEMLQIVEEHGLGE-KKFFHGDKIGLVDIAFGSIVHWLQIIED-IVGVKLFESHKFPGL 181 (222)
Q Consensus 104 ~~~~~~~~~~~~~~~~~~~~~~~~l~~l~e~~L~~-~~~l~G~~~s~AD~~l~~~l~~~~~~~~-~~~~~~~~~~~~p~l 181 (222)
++.+..+.......++..+.+.+.|..| |..|++ ++|++|+++|+||+++++.+.++..... ..+... .+.+|+|
T Consensus 15 ~~~~~~~~~~~~~~~~~~~~l~~~l~~L-e~~L~~~~~fl~Gd~~TlADi~l~~~l~~l~~~~~~~~~~~~--~~~~P~l 91 (121)
T cd03201 15 FSTFVGFLKSKDSNDGTEQALLDELEAL-EDHLKENGPFINGEKISAVDLSLAPKLYHLEIALGHYKNWSV--PESLTSV 91 (121)
T ss_pred HHHHHHHHHCCcHHHHHHHHHHHHHHHH-HHHHhcCCCccCCCCCCHHhHHHHHHHHHHHHHHHHhcCCCC--cccchHH
Confidence 5555554444444466778899999999 889974 7999999999999999998877754322 123222 3689999
Q ss_pred HHHHHHhcccchhhccCCChHHHHH
Q 027524 182 HAWLKNYKQVPVVEENLPSRDELLV 206 (222)
Q Consensus 182 ~~w~~~~~~~p~~~~~~~~~~~~~~ 206 (222)
.+|++++.+||+|+++++..+++..
T Consensus 92 ~~w~~rl~~rps~~~t~~~~~~~~~ 116 (121)
T cd03201 92 KSYMKALFSRESFVKTKAEKEDVIA 116 (121)
T ss_pred HHHHHHHHCCchhhhcCCCHHHHHH
Confidence 9999999999999999987776543
No 73
>cd03189 GST_C_GTT1_like GST_C family, Saccharomyces cerevisiae GTT1-like subfamily; composed of predominantly uncharacterized proteins with similarity to the S. cerevisiae GST protein, GTT1, and the Schizosaccharomyces pombe GST-III. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins, and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal thioredoxin-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. GSH binds to the N-terminal domain while the hydrophobic substrate occupies a pocket in the C-terminal domain. GTT1, a homodimer, exhibits GST activity with standard substrates and associates with the endopl
Probab=99.50 E-value=2.4e-13 Score=95.39 Aligned_cols=101 Identities=26% Similarity=0.393 Sum_probs=78.0
Q ss_pred CCCHHHHHHHHHHHHHHhhh-cchhh-h-h---hcC-----------HHHHHHHHHHHHHHHHHHHhcccCCCCccccCC
Q 027524 84 PSDPYDRAQARFWINFAENK-GAAVW-K-L---FRS-----------IEDQENTMKEILEMLQIVEEHGLGEKKFFHGDK 146 (222)
Q Consensus 84 p~~~~~~a~~~~~~~~~~~~-~~~~~-~-~---~~~-----------~~~~~~~~~~~~~~l~~l~e~~L~~~~~l~G~~ 146 (222)
|.++.+++++++|+.+.+.. .+.+. . + +.. ....+.....+.+.++.| |..|++++|++|++
T Consensus 2 ~~~~~~ra~~~~wl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l-e~~L~~~~~l~Gd~ 80 (119)
T cd03189 2 PPDTAEYADYLYWLHFAEGSLMPPLLLKLVLSRIGSAPPPIANKIADKVLAGFINPELKKHLDFL-EDRLAKKGYFVGDK 80 (119)
T ss_pred CCCHHHHHHHHHHHHHHhHhhhHHHHHHHHHhhcCCCCcchHHHHHHHHHHHHHhHHHHHHHHHH-HHHHccCCCCCCCC
Confidence 56889999999999998776 44332 1 1 111 222334567899999999 99999999999999
Q ss_pred CChhHHHHHHHHHHHHHHHHhhcccccCCCCCchHHHHHHHhcccc
Q 027524 147 IGLVDIAFGSIVHWLQIIEDIVGVKLFESHKFPGLHAWLKNYKQVP 192 (222)
Q Consensus 147 ~s~AD~~l~~~l~~~~~~~~~~~~~~~~~~~~p~l~~w~~~~~~~p 192 (222)
+|+||+++++.+.+.... +. ....+|+|.+|+++++++|
T Consensus 81 ~t~ADi~l~~~~~~~~~~----~~---~~~~~p~l~~w~~~~~~~p 119 (119)
T cd03189 81 LTAADIMMSFPLEAALAR----GP---LLEKYPNIAAYLERIEARP 119 (119)
T ss_pred CCHHHHHHHHHHHHHHHc----Cc---ccccCchHHHHHHHHhcCC
Confidence 999999999988887432 22 2458999999999999986
No 74
>cd03187 GST_C_Phi GST_C family, Class Phi subfamily; composed of plant-specific class Phi GSTs and related fungal and bacterial proteins. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins, and products of oxidative stress. The GST fold contains an N-terminal thioredoxin-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. GSH binds to the N-terminal domain while the hydrophobic substrate occupies a pocket in the C-terminal domain. The class Phi GST subfamily has experience extensive gene duplication. The Arabidopsis and Oryza genomes contain 13 and 16 Tau GSTs, respectively. They are primarily responsible for herbicide detoxification together with class Tau GSTs, showing class specificity in substrate preference. Phi enzymes a
Probab=99.48 E-value=2.1e-13 Score=95.40 Aligned_cols=104 Identities=18% Similarity=0.365 Sum_probs=78.2
Q ss_pred HHHHHHHHHHHHhhh-cchhhh-----hh-------cCHHHHHHHHHHHHHHHHHHHhcccCCCCccccCCCChhHHHHH
Q 027524 89 DRAQARFWINFAENK-GAAVWK-----LF-------RSIEDQENTMKEILEMLQIVEEHGLGEKKFFHGDKIGLVDIAFG 155 (222)
Q Consensus 89 ~~a~~~~~~~~~~~~-~~~~~~-----~~-------~~~~~~~~~~~~~~~~l~~l~e~~L~~~~~l~G~~~s~AD~~l~ 155 (222)
+|+++..|+.+.+.. .+.+.. .+ .+.+..+.....+.+.++.| |..|++++|++|+++|+||++++
T Consensus 2 ~ra~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l-e~~L~~~~~l~G~~~t~aDi~l~ 80 (118)
T cd03187 2 ERAIVEQWLEVESHQFDPPASALAFELVFKPMLGLPTDEAVVEENEEKLKKVLDVY-EARLSKSKYLAGDSFTLADLSHL 80 (118)
T ss_pred chHHHHHHHHHHHhhcchhHHHHHHHHHHhhccCCCCCHHHHHHHHHHHHHHHHHH-HHHcccCcccCCCCccHHHHHHH
Confidence 578888998887655 333221 11 12344456778899999999 99999899999999999999999
Q ss_pred HHHHHHHHHHHhhcccccCCCCCchHHHHHHHhcccchhhccC
Q 027524 156 SIVHWLQIIEDIVGVKLFESHKFPGLHAWLKNYKQVPVVEENL 198 (222)
Q Consensus 156 ~~l~~~~~~~~~~~~~~~~~~~~p~l~~w~~~~~~~p~~~~~~ 198 (222)
+++.+.... +.... .+.+|+|.+|++++.++|++++++
T Consensus 81 ~~~~~~~~~----~~~~~-~~~~p~l~~~~~~~~~~p~~~~~~ 118 (118)
T cd03187 81 PYLQYLMAT----PFAKL-FDSRPHVKAWWEDISARPAWKKVL 118 (118)
T ss_pred HHHHHHHHc----cchhh-hhcCchHHHHHHHHHhCHHHHhhC
Confidence 998887431 11111 348999999999999999998764
No 75
>cd03178 GST_C_Ure2p_like GST_C family, Ure2p-like subfamily; composed of the Saccharomyces cerevisiae Ure2p and related GSTs. Ure2p is a regulator for nitrogen catabolism in yeast. It represses the expression of several gene products involved in the use of poor nitrogen sources when rich sources are available. A transmissible conformational change of Ure2p results in a prion called [Ure3], an inactive, self-propagating and infectious amyloid. Ure2p displays a GST fold containing an N-terminal thioredoxin-fold domain and a C-terminal alpha helical domain. The N-terminal thioredoxin-fold domain is sufficient to induce the [Ure3] phenotype and is also called the prion domain of Ure2p. In addition to its role in nitrogen regulation, Ure2p confers protection to cells against heavy metal ion and oxidant toxicity, and shows glutathione (GSH) peroxidase activity. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of GSH with a wide range of en
Probab=99.48 E-value=1.3e-13 Score=95.88 Aligned_cols=103 Identities=22% Similarity=0.417 Sum_probs=80.3
Q ss_pred HHHHHHHHHHHHhhh-cchhhh-----hhc---CHHHHHHHHHHHHHHHHHHHhcccCCCCccccCCCChhHHHHHHHHH
Q 027524 89 DRAQARFWINFAENK-GAAVWK-----LFR---SIEDQENTMKEILEMLQIVEEHGLGEKKFFHGDKIGLVDIAFGSIVH 159 (222)
Q Consensus 89 ~~a~~~~~~~~~~~~-~~~~~~-----~~~---~~~~~~~~~~~~~~~l~~l~e~~L~~~~~l~G~~~s~AD~~l~~~l~ 159 (222)
+++++++|+.+.+.. .+.+.. ... .+.........+.+.++.+ |+.|++++|++|+++|+||+++++.+.
T Consensus 1 ~ra~~~~wl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l-e~~L~~~~~l~G~~~t~aDi~l~~~~~ 79 (113)
T cd03178 1 ERYEVLQWLFFQMGGLGPMFGQAGHFSRYAPEKIPYAIERYTNEAKRLYGVL-DKRLAGRDYLAGDEYSIADIAIFPWVR 79 (113)
T ss_pred ChHHHHHHHHHHHccCCCcchHHHHHHHhCCCCChHHHHHHHHHHHHHHHHH-HHHHccCCcccCCCCCeeeeeHHHHHH
Confidence 478899999998777 333321 111 1344566788899999999 999998899999999999999999888
Q ss_pred HHHHHHHhhcccccCCCCCchHHHHHHHhcccchhhccC
Q 027524 160 WLQIIEDIVGVKLFESHKFPGLHAWLKNYKQVPVVEENL 198 (222)
Q Consensus 160 ~~~~~~~~~~~~~~~~~~~p~l~~w~~~~~~~p~~~~~~ 198 (222)
+.... +... ..++|++.+|++++.++|++++++
T Consensus 80 ~~~~~----~~~~--~~~~p~l~~w~~~~~~~p~~~~~~ 112 (113)
T cd03178 80 RLEWI----GIDD--LDDFPNVKRWLDRIAARPAVQRGL 112 (113)
T ss_pred HHHhc----cccc--hhhchHHHHHHHHHhhCHHHHHhc
Confidence 87543 2222 458999999999999999999865
No 76
>cd03210 GST_C_Pi GST_C family, Class Pi subfamily; GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins, and products of oxidative stress. The GST fold contains an N-terminal thioredoxin-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. GSH binds to the N-terminal domain while the hydrophobic substrate occupies a pocket in the C-terminal domain. Class Pi GST is a homodimeric eukaryotic protein. The human GSTP1 is mainly found in erythrocytes, kidney, placenta and fetal liver. It is involved in stress responses and in cellular proliferation pathways as an inhibitor of JNK (c-Jun N-terminal kinase). Following oxidative stress, monomeric GSTP1 dissociates from JNK and dimerizes, losing its ability to bind JNK and causing an incre
Probab=99.47 E-value=3e-13 Score=95.95 Aligned_cols=107 Identities=20% Similarity=0.287 Sum_probs=81.4
Q ss_pred HHHHHHHHHHHHhhhcchhhh-hhcC-HHHHHHHHHHHHHHHHHHHhcccCC---CCccccCCCChhHHHHHHHHHHHHH
Q 027524 89 DRAQARFWINFAENKGAAVWK-LFRS-IEDQENTMKEILEMLQIVEEHGLGE---KKFFHGDKIGLVDIAFGSIVHWLQI 163 (222)
Q Consensus 89 ~~a~~~~~~~~~~~~~~~~~~-~~~~-~~~~~~~~~~~~~~l~~l~e~~L~~---~~~l~G~~~s~AD~~l~~~l~~~~~ 163 (222)
++++++.+++.+.+.+..+.. ++.. ....+.....+.+.+..| |+.|++ ++|++|+++|+||+++++.+.++..
T Consensus 3 e~~~vd~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l-e~~L~~~~~~~~l~G~~~T~ADi~l~~~~~~~~~ 81 (126)
T cd03210 3 EAALIDMVNDGVEDLRLKYVRMIYQNYEAGKDDYIKDLPEQLKPF-EKLLSKNNGKGFIVGDKISFADYNLFDLLDIHLV 81 (126)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHH-HHHHHhCCCCCeeeCCCccHHHHHHHHHHHHHHH
Confidence 577888888877776554432 2222 334556677789999999 999963 5899999999999999999988853
Q ss_pred HHHhhcccccCCCCCchHHHHHHHhcccchhhccCCChH
Q 027524 164 IEDIVGVKLFESHKFPGLHAWLKNYKQVPVVEENLPSRD 202 (222)
Q Consensus 164 ~~~~~~~~~~~~~~~p~l~~w~~~~~~~p~~~~~~~~~~ 202 (222)
. +... .+.+|+|.+|++++.++|+|++++....
T Consensus 82 ~----~~~~--~~~~P~l~~~~~rv~~~p~v~~~~~~~~ 114 (126)
T cd03210 82 L----APGC--LDAFPLLKAFVERLSARPKLKAYLESDA 114 (126)
T ss_pred h----ChHh--hhcChHHHHHHHHHHhCcHHHHHHhCcC
Confidence 3 1122 3589999999999999999999886543
No 77
>cd03191 GST_C_Zeta GST_C family, Class Zeta subfamily; GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins, and products of oxidative stress. The GST fold contains an N-terminal thioredoxin-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. GSH binds to the N-terminal domain while the hydrophobic substrate occupies a pocket in the C-terminal domain. Class Zeta GSTs, also known as maleylacetoacetate (MAA) isomerases, catalyze the isomerization of MAA to fumarylacetoacetate, the penultimate step in tyrosine/phenylalanine catabolism, using GSH as a cofactor. They show little GSH-conjugating activity towards traditional GST substrates, but display modest GSH peroxidase activity. They are also implicated in the detoxification of th
Probab=99.46 E-value=3.5e-13 Score=94.86 Aligned_cols=105 Identities=19% Similarity=0.178 Sum_probs=78.3
Q ss_pred HHHHHHHHHHHHHhhh-cchh----hhhhc------CHHHHHHHHHHHHHHHHHHHhcccC--CCCccccCCCChhHHHH
Q 027524 88 YDRAQARFWINFAENK-GAAV----WKLFR------SIEDQENTMKEILEMLQIVEEHGLG--EKKFFHGDKIGLVDIAF 154 (222)
Q Consensus 88 ~~~a~~~~~~~~~~~~-~~~~----~~~~~------~~~~~~~~~~~~~~~l~~l~e~~L~--~~~~l~G~~~s~AD~~l 154 (222)
.+|+++++|+.++++. .+.+ ..... .....+.....+.+.|..| |+.|+ +++|++|+++|+||+++
T Consensus 2 ~~ra~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l-e~~L~~~~~~~l~G~~~t~ADi~~ 80 (121)
T cd03191 2 KKRARVRALALIIACDIHPLNNLRVLKYLTEELGLDEEAKNAWYRHWIARGFAAL-EKLLAQTAGKFCFGDEPTLADICL 80 (121)
T ss_pred hhHHHHHHHHHHHHccCCccccHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHH-HHHHHhcCCCeecCCcCCHHHHHH
Confidence 4789999999998866 3321 11111 1122233456789999999 99997 45799999999999999
Q ss_pred HHHHHHHHHHHHhhcccccCCCCCchHHHHHHHhcccchhhccCCC
Q 027524 155 GSIVHWLQIIEDIVGVKLFESHKFPGLHAWLKNYKQVPVVEENLPS 200 (222)
Q Consensus 155 ~~~l~~~~~~~~~~~~~~~~~~~~p~l~~w~~~~~~~p~~~~~~~~ 200 (222)
++.+.+.... +.. ...+|+|.+|++++.++|+|+++.+.
T Consensus 81 ~~~~~~~~~~----~~~---~~~~p~l~~w~~~~~~~p~~~~~~~~ 119 (121)
T cd03191 81 VPQVYNARRF----GVD---LSPYPTIARINEACLELPAFQAAHPD 119 (121)
T ss_pred HHHHHHHHHh----CCC---cccCcHHHHHHHHHHhChhHHHhCcC
Confidence 9988776432 322 35899999999999999999998763
No 78
>cd03208 GST_C_Alpha GST_C family, Class Alpha subfamily; GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins, and products of oxidative stress. The GST fold contains an N-terminal thioredoxin-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. GSH binds to the N-terminal domain while the hydrophobic substrate occupies a pocket in the C-terminal domain. The class Alpha subfamily is composed of vertebrate GSTs which can form homodimer and heterodimers. There are at least six types of class Alpha GST subunits in rats, four of which have human counterparts, resulting in many possible isoenzymes with different activities, tissue distribution and substrate specificities. Human GSTA1-1 and GSTA2-2 show high GSH peroxidase activity. GS
Probab=99.45 E-value=4.7e-13 Score=96.27 Aligned_cols=107 Identities=19% Similarity=0.277 Sum_probs=79.3
Q ss_pred HHHHHHHHHHHHhhhcchhh-hhhcCHHHHH-----HHHHHHHHHHHHHHhcccC--CCCccccCCCChhHHHHHHHHHH
Q 027524 89 DRAQARFWINFAENKGAAVW-KLFRSIEDQE-----NTMKEILEMLQIVEEHGLG--EKKFFHGDKIGLVDIAFGSIVHW 160 (222)
Q Consensus 89 ~~a~~~~~~~~~~~~~~~~~-~~~~~~~~~~-----~~~~~~~~~l~~l~e~~L~--~~~~l~G~~~s~AD~~l~~~l~~ 160 (222)
++++++++++.+.+....+. .++...+... .....+.+.|+.| |+.|+ +++|++|+++|+||+++++.+.+
T Consensus 3 e~a~iD~i~~~v~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l-E~~L~~~~~~~l~G~~~T~ADi~l~~~l~~ 81 (137)
T cd03208 3 ERALIDMYVEGTADLMEMILMLPFLPPEEKEAKLALIKEKAKNRYFPVF-EKVLKSHGQDFLVGNKLSRADIHLLEAILM 81 (137)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHccCChhhHHHHHHHHHHHHHHHHHHHH-HHHHHhCCCCeeeCCCCCHHHHHHHHHHHH
Confidence 57788888888877754443 2222222222 2234567899999 99997 67899999999999999999988
Q ss_pred HHHHHHhhcccccCCCCCchHHHHHHHhcccchhhccCCChH
Q 027524 161 LQIIEDIVGVKLFESHKFPGLHAWLKNYKQVPVVEENLPSRD 202 (222)
Q Consensus 161 ~~~~~~~~~~~~~~~~~~p~l~~w~~~~~~~p~~~~~~~~~~ 202 (222)
+... +... ...+|+|.+|++++.++|++++++....
T Consensus 82 ~~~~----~~~~--l~~~P~l~~~~~rv~~~P~vk~~~~~~~ 117 (137)
T cd03208 82 VEEL----DPSL--LSDFPLLQAFKTRISNLPTIKKFLQPGS 117 (137)
T ss_pred HHHh----chhh--hccChHHHHHHHHHHcCHHHHHHHhcCC
Confidence 8543 2222 3589999999999999999999887544
No 79
>cd03177 GST_C_Delta_Epsilon GST_C family, Class Delta and Epsilon subfamily; GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal thioredoxin-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. GSH binds to the N-terminal domain while the hydrophobic substrate occupies a pocket in the C-terminal domain. The class Delta and Epsilon subfamily is made up primarily of insect GSTs, which play major roles in insecticide resistance by facilitating reductive dehydrochlorination of insecticides or conjugating them with GSH to produce water-soluble metabolites th
Probab=99.45 E-value=2.2e-13 Score=95.52 Aligned_cols=103 Identities=24% Similarity=0.425 Sum_probs=79.4
Q ss_pred HHHHHHHHHHHHhhh-cchhh-----hhhcCHHHHHHHHHHHHHHHHHHHhcccCCCCccccCCCChhHHHHHHHHHHHH
Q 027524 89 DRAQARFWINFAENK-GAAVW-----KLFRSIEDQENTMKEILEMLQIVEEHGLGEKKFFHGDKIGLVDIAFGSIVHWLQ 162 (222)
Q Consensus 89 ~~a~~~~~~~~~~~~-~~~~~-----~~~~~~~~~~~~~~~~~~~l~~l~e~~L~~~~~l~G~~~s~AD~~l~~~l~~~~ 162 (222)
+++++++|+.+.... .+.+. .........+.....+.+.++.| |+.|++++|++|+++|+||+++++++.++.
T Consensus 2 ~~a~~~~wl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l-e~~L~~~~~l~G~~~s~aDi~l~~~~~~~~ 80 (118)
T cd03177 2 KRAIVNQRLHFDSGTLYQRLRDYYYPILFGGAEPPEEKLDKLEEALDFL-ETFLEGSDYVAGDQLTIADLSLVATVSTLE 80 (118)
T ss_pred hHHHHHHHHHhhhchHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHH-HHHHccCCeeCCCCcCHHHHHHHHHHHHHH
Confidence 578899999888655 33332 11122244566788899999999 999988899999999999999999998885
Q ss_pred HHHHhhcccccCCCCCchHHHHHHHhcccchhhccC
Q 027524 163 IIEDIVGVKLFESHKFPGLHAWLKNYKQVPVVEENL 198 (222)
Q Consensus 163 ~~~~~~~~~~~~~~~~p~l~~w~~~~~~~p~~~~~~ 198 (222)
.. .+.. ...+|+|.+|++++.++|++++..
T Consensus 81 ~~---~~~~---~~~~p~l~~w~~~~~~~p~~~~~~ 110 (118)
T cd03177 81 AL---LPLD---LSKYPNVRAWLERLKALPPYEEAN 110 (118)
T ss_pred Hh---cCCC---hhhCchHHHHHHHHHcccchHHHH
Confidence 31 1322 347999999999999999999854
No 80
>cd03181 GST_C_EFB1gamma GST_C family, Gamma subunit of Elongation Factor 1B (EFB1gamma) subfamily; EF1Bgamma is part of the eukaryotic translation elongation factor-1 (EF1) complex which plays a central role in the elongation cycle during protein biosynthesis. EF1 consists of two functionally distinct units, EF1A and EF1B. EF1A catalyzes the GTP-dependent binding of aminoacyl-tRNA to the ribosomal A site concomitant with the hydrolysis of GTP. The resulting inactive EF1A:GDP complex is recycled to the active GTP form by the guanine-nucleotide exchange factor EF1B, a complex composed of at least two subunits, alpha and gamma. Metazoan EFB1 contain a third subunit, beta. The EF1B gamma subunit contains a GST fold consisting of an N-terminal thioredoxin-fold domain and a C-terminal alpha helical domain. The GST-like domain of EF1Bgamma is believed to mediate the dimerization of the EF1 complex, which in yeast is a dimer of the heterotrimer EF1A:EF1Balpha:EF1Bgamma. In addition to its role
Probab=99.44 E-value=3.7e-13 Score=94.96 Aligned_cols=109 Identities=19% Similarity=0.347 Sum_probs=83.2
Q ss_pred HHHHHHHHHHHHhhh-cchhh----hhh----cCHHHHHHHHHHHHHHHHHHHhcccCCCCccccCCCChhHHHHHHHHH
Q 027524 89 DRAQARFWINFAENK-GAAVW----KLF----RSIEDQENTMKEILEMLQIVEEHGLGEKKFFHGDKIGLVDIAFGSIVH 159 (222)
Q Consensus 89 ~~a~~~~~~~~~~~~-~~~~~----~~~----~~~~~~~~~~~~~~~~l~~l~e~~L~~~~~l~G~~~s~AD~~l~~~l~ 159 (222)
+|+++++|+.+++.. .+.+. ... .+....+.....+.+.++.| |+.|++++|++|+++|+||+++++.+.
T Consensus 1 ~ra~~~~wl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l-e~~l~~~~~l~G~~~siaDi~l~~~~~ 79 (123)
T cd03181 1 EEAQVLQWVSFANTELLPAVAAWFLPLLGIAPYNKKSVEAALEELDRVLGVL-EERLLKRTYLVGERLTLADIFVAGALL 79 (123)
T ss_pred ChHHHHHHHHHHHhhhHHHHHHHHHHHcCccCCCHHHHHHHHHHHHHHHHHH-HHHHccCceeccCCccHHHHHHHHHHH
Confidence 368889999988776 44332 111 12345667788899999999 999998899999999999999999988
Q ss_pred HHHHHHHhhcccccCCCCCchHHHHHHHhcccchhhccCCChH
Q 027524 160 WLQIIEDIVGVKLFESHKFPGLHAWLKNYKQVPVVEENLPSRD 202 (222)
Q Consensus 160 ~~~~~~~~~~~~~~~~~~~p~l~~w~~~~~~~p~~~~~~~~~~ 202 (222)
+...... +... ...+|++.+|++++.++|++++++.+.+
T Consensus 80 ~~~~~~~--~~~~--~~~~p~l~~w~~~~~~~p~~~~~~~~~~ 118 (123)
T cd03181 80 LGFTYVF--DKEW--RAKYPNVTRWFNTVVNQPIFKAVFGEVK 118 (123)
T ss_pred HHHHHHc--CHHH--HHhChHHHHHHHHHHcCHHHHHHcCCCC
Confidence 8743211 1112 2479999999999999999999887654
No 81
>cd03200 GST_C_JTV1 GST_C family, JTV-1 subfamily; composed of uncharacterized proteins with similarity to the translation product of the human JTV-1 gene. Human JTV-1, a gene of unknown function, initiates within the human PMS2 gene promoter, but is transcribed from the opposite strand. PMS2 encodes a protein involved in DNA mismatch repair and is mutated in a subset of patients with hereditary nonpolyposis colon cancer. It is unknown whether the expression of JTV-1 affects that of PMS2, or vice versa, as a result of their juxtaposition. JTV-1 is up-regulated while PMS2 is down-regulated in tumor cell spheroids that show increased resistance to anticancer cytotoxic drugs compared with tumor cell monolayers indicating that suppressed DNA mismatch repair may be a mechanism for multicellular resistance to alkylating agents.
Probab=99.43 E-value=5.1e-13 Score=90.08 Aligned_cols=95 Identities=20% Similarity=0.328 Sum_probs=74.0
Q ss_pred HHHHHhhCCCCCCCCCCHHHHHHHHHHHHHHhhhcchhhhhhcCHHHHHHHHHHHHHHHHHHHhcccCCCCccccCCCCh
Q 027524 70 LEYIEETWPQNPLMPSDPYDRAQARFWINFAENKGAAVWKLFRSIEDQENTMKEILEMLQIVEEHGLGEKKFFHGDKIGL 149 (222)
Q Consensus 70 ~~yL~~~~~~~~l~p~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~e~~L~~~~~l~G~~~s~ 149 (222)
++||++.. .++|.++.++++++.|++.....+. ......+.+.++.+ |+.|++++|++|+++|+
T Consensus 1 ~r~~~~~~---~~~~~~~~~~~~vd~~~d~~~~~l~------------~~~~~~~~~~l~~l-e~~L~~~~fl~Gd~~ti 64 (96)
T cd03200 1 ARFLYRLL---GPAPNAPNAATNIDSWVDTAIFQLA------------EGSSKEKAAVLRAL-NSALGRSPWLVGSEFTV 64 (96)
T ss_pred CchHHHHh---cccCCCchHHHHHHHHHHHHHHHHh------------cCCHHHHHHHHHHH-HHHHcCCCccCCCCCCH
Confidence 47888883 3899999999999999997642211 11334456788899 99999999999999999
Q ss_pred hHHHHHHHHHHHHHHHHhhcccccCCCCCchHHHHHHHhcc
Q 027524 150 VDIAFGSIVHWLQIIEDIVGVKLFESHKFPGLHAWLKNYKQ 190 (222)
Q Consensus 150 AD~~l~~~l~~~~~~~~~~~~~~~~~~~~p~l~~w~~~~~~ 190 (222)
||+++++.+.+. +. ..+.+|+|.+|++++.+
T Consensus 65 ADi~l~~~l~~~-------~~---~~~~~p~l~~w~~r~~~ 95 (96)
T cd03200 65 ADIVSWCALLQT-------GL---ASAAPANVQRWLKSCEN 95 (96)
T ss_pred HHHHHHHHHHHc-------cc---ccccChHHHHHHHHHHh
Confidence 999999987643 21 13489999999999975
No 82
>cd03180 GST_C_2 GST_C family, unknown subfamily 2; composed of uncharacterized bacterial proteins, with similarity to GSTs. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal thioredoxin-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. GSH binds to the N-terminal domain while the hydrophobic substrate occupies a pocket in the C-terminal domain.
Probab=99.43 E-value=1.1e-12 Score=90.44 Aligned_cols=98 Identities=18% Similarity=0.374 Sum_probs=74.2
Q ss_pred HHHHHHHHHHHHhhh-cchhhhh-----hc-----CHHHHHHHHHHHHHHHHHHHhcccCCCCccccCCCChhHHHHHHH
Q 027524 89 DRAQARFWINFAENK-GAAVWKL-----FR-----SIEDQENTMKEILEMLQIVEEHGLGEKKFFHGDKIGLVDIAFGSI 157 (222)
Q Consensus 89 ~~a~~~~~~~~~~~~-~~~~~~~-----~~-----~~~~~~~~~~~~~~~l~~l~e~~L~~~~~l~G~~~s~AD~~l~~~ 157 (222)
+|+++++|+.+.++. .+.+... .. +....+.....+.+.++.| |+.|++++|++|+++|+||++++++
T Consensus 2 ~ra~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l-E~~L~~~~~l~g~~~t~aDi~~~~~ 80 (110)
T cd03180 2 ARARADRWMDWQTSTLNPAFRYAFWGLVRTPPEQRDPAAIAASLAAWAKLMAIL-DAQLAGRPYLAGDRFTLADIPLGCS 80 (110)
T ss_pred chhHHHHHHHHHHhhcChHHHHHHHHHHcCCcccCCHHHHHHHHHHHHHHHHHH-HHHhCCCCcccCCCCCHHHHHHHHH
Confidence 478899999888766 4444211 11 1233456788999999999 9999988999999999999999998
Q ss_pred HHHHHHHHHhhcccccCCCCCchHHHHHHHhcccchh
Q 027524 158 VHWLQIIEDIVGVKLFESHKFPGLHAWLKNYKQVPVV 194 (222)
Q Consensus 158 l~~~~~~~~~~~~~~~~~~~~p~l~~w~~~~~~~p~~ 194 (222)
+...... + .+..++|+|.+|++++.++|++
T Consensus 81 ~~~~~~~----~---~~~~~~p~l~~~~~~~~~~p~~ 110 (110)
T cd03180 81 AYRWFEL----P---IERPPLPHLERWYARLRARPAF 110 (110)
T ss_pred HHHHHHc----c---cccccCchHHHHHHHHHhCCCC
Confidence 7544211 2 1246899999999999999975
No 83
>cd03079 GST_N_Metaxin2 GST_N family, Metaxin subfamily, Metaxin 2; a metaxin 1 binding protein identified through a yeast two-hybrid system using metaxin 1 as the bait. Metaxin 2 shares sequence similarity with metaxin 1 but does not contain a C-terminal mitochondrial outer membrane signal-anchor domain. It associates with mitochondrial membranes through its interaction with metaxin 1, which is a component of the mitochondrial preprotein import complex of the outer membrane. The biological function of metaxin 2 is unknown. It is likely that it also plays a role in protein translocation into the mitochondria. However, this has not been experimentally validated. In a recent proteomics study, it has been shown that metaxin 2 is overexpressed in response to lipopolysaccharide-induced liver injury.
Probab=99.39 E-value=1.6e-12 Score=82.51 Aligned_cols=60 Identities=23% Similarity=0.268 Sum_probs=50.0
Q ss_pred cCChhhhHHHHHHHhhCCCeeEEEcCCCCChhHHHhhCCCCCcccEEEeCCeeeehhHHHHHHHHhh
Q 027524 10 LLSPFNYRVVCALKLKGIPFELIKEDLSNKSALLLKYNPVHKKIPVLVHGGKPVCESMVILEYIEET 76 (222)
Q Consensus 10 ~~s~~~~~v~~~l~~~gi~~~~~~v~~~~~~~~~~~~~p~~g~vP~L~~~g~~l~es~aI~~yL~~~ 76 (222)
+.+++|.+++++|+++|+||+.+.+.. .. ..+|. |+||+|++||.+|+||.+|+.||.++
T Consensus 15 ~~~~~~~kv~~~L~elglpye~~~~~~----~~--~~~P~-GkVP~L~~dg~vI~eS~aIl~yL~~~ 74 (74)
T cd03079 15 PDNASCLAVQTFLKMCNLPFNVRCRAN----AE--FMSPS-GKVPFIRVGNQIVSEFGPIVQFVEAK 74 (74)
T ss_pred CCCCCHHHHHHHHHHcCCCcEEEecCC----cc--ccCCC-CcccEEEECCEEEeCHHHHHHHHhcC
Confidence 357789999999999999999984321 11 15787 89999999999999999999999864
No 84
>PF00043 GST_C: Glutathione S-transferase, C-terminal domain; InterPro: IPR004046 In eukaryotes, glutathione S-transferases (GSTs) participate in the detoxification of reactive electrophillic compounds by catalysing their conjugation to glutathione. The GST domain is also found in S-crystallins from squid, and proteins with no known GST activity, such as eukaryotic elongation factors 1-gamma and the HSP26 family of stress-related proteins, which include auxin-regulated proteins in plants and stringent starvation proteins in Escherichia coli. The major lens polypeptide of cephalopods is also a GST [, , , ]. Bacterial GSTs of known function often have a specific, growth-supporting role in biodegradative metabolism: epoxide ring opening and tetrachlorohydroquinone reductive dehalogenation are two examples of the reactions catalysed by these bacterial GSTs. Some regulatory proteins, like the stringent starvation proteins, also belong to the GST family [, ]. GST seems to be absent from Archaea in which gamma-glutamylcysteine substitute to glutathione as major thiol. Glutathione S-transferases form homodimers, but in eukaryotes can also form heterodimers of the A1 and A2 or YC1 and YC2 subunits. The homodimeric enzymes display a conserved structural fold. Each monomer is composed of a distinct N-terminal sub-domain, which adopts the thioredoxin fold, and a C-terminal all-helical sub-domain. This entry is the C-terminal domain.; PDB: 3UAP_A 3UAR_A 3QAV_A 3QAW_A 1Y6E_A 1U88_B 4AI6_B 1UA5_A 4AKH_A 3QMZ_S ....
Probab=99.37 E-value=2e-12 Score=86.90 Aligned_cols=73 Identities=27% Similarity=0.543 Sum_probs=61.5
Q ss_pred HHHHHHHHHHHHHHHHHHHhcccCCCCccccCCCChhHHHHHHHHHHHHHHHHhhcccccCCCCCchHHHHHHHhcccc
Q 027524 114 IEDQENTMKEILEMLQIVEEHGLGEKKFFHGDKIGLVDIAFGSIVHWLQIIEDIVGVKLFESHKFPGLHAWLKNYKQVP 192 (222)
Q Consensus 114 ~~~~~~~~~~~~~~l~~l~e~~L~~~~~l~G~~~s~AD~~l~~~l~~~~~~~~~~~~~~~~~~~~p~l~~w~~~~~~~p 192 (222)
++..+.....+.+.|+.+ |..|++++|++|+++|+||+++++.+.++... +.... .+++|+|.+|++++.++|
T Consensus 23 ~~~~~~~~~~~~~~l~~l-e~~l~~~~~l~G~~~t~ADi~~~~~~~~~~~~----~~~~~-~~~~P~l~~w~~~~~~~P 95 (95)
T PF00043_consen 23 EEMVEEARAKVPRYLEVL-EKRLKGGPYLVGDKLTIADIALFPMLDWLERL----GPDFL-FEKFPKLKKWYERMFARP 95 (95)
T ss_dssp HHHHHHHHHHHHHHHHHH-HHHHHTSSSSSBSS-CHHHHHHHHHHHHHHHH----TTTTT-HTTSHHHHHHHHHHHTSH
T ss_pred HHHHHHHHHHHHHHHHHH-HHHHcCCCeeeccCCchhHHHHHHHHHHHHHh----CCCcc-cccCHHHHHHHHHHHcCC
Confidence 335667788999999999 99999999999999999999999999998665 33332 269999999999999987
No 85
>cd03183 GST_C_Theta GST_C family, Class Theta subfamily; composed of eukaryotic class Theta GSTs and bacterial dichloromethane (DCM) dehalogenase. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. The GST fold contains an N-terminal thioredoxin-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. GSH binds to the N-terminal domain while the hydrophobic substrate occupies a pocket in the C-terminal domain. Mammalian class Theta GSTs show poor GSH conjugating activity towards the standard substrates, CDNB and ethacrynic acid, differentiating them from other mammalian GSTs. GSTT1-1 shows similar cataytic activity as bacterial DCM dehalogenase, catalyzing the GSH-dependent hydrolytic dehalogenatio
Probab=99.35 E-value=3.5e-12 Score=90.37 Aligned_cols=102 Identities=25% Similarity=0.370 Sum_probs=73.8
Q ss_pred HHHHHHHHHHHhhh-cchhh-----h----hh----cCHHHHHHHHHHHHHHHHHHHhcc-cCCCCccccCCCChhHHHH
Q 027524 90 RAQARFWINFAENK-GAAVW-----K----LF----RSIEDQENTMKEILEMLQIVEEHG-LGEKKFFHGDKIGLVDIAF 154 (222)
Q Consensus 90 ~a~~~~~~~~~~~~-~~~~~-----~----~~----~~~~~~~~~~~~~~~~l~~l~e~~-L~~~~~l~G~~~s~AD~~l 154 (222)
++++++|+.+.... .+.+. . .+ .+.+..+.....+.+.++.+ |.. +++++|++|+++|+||+++
T Consensus 2 ra~~~~wl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l-e~~l~~~~~~l~Gd~~t~ADi~l 80 (126)
T cd03183 2 RARVDEYLAWQHTNLRLGCAKYFWQKVLLPLLGGKPVSPEKVKKAEENLEESLDLL-ENYFLKDKPFLAGDEISIADLSA 80 (126)
T ss_pred cccHHHHHHHHHhhhHhhHHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHHHHHH-HHHHhcCCCcccCCCCCHHHHHH
Confidence 45677777776544 22221 0 11 12445566778899999999 876 5667899999999999999
Q ss_pred HHHHHHHHHHHHhhcccccCCCCCchHHHHHHHhcc--cchhhccC
Q 027524 155 GSIVHWLQIIEDIVGVKLFESHKFPGLHAWLKNYKQ--VPVVEENL 198 (222)
Q Consensus 155 ~~~l~~~~~~~~~~~~~~~~~~~~p~l~~w~~~~~~--~p~~~~~~ 198 (222)
++.+.+.... +.+. .+++|+|.+|++++.+ +|++++..
T Consensus 81 ~~~~~~~~~~----~~~~--~~~~p~l~~w~~~~~~~~~p~~~~~~ 120 (126)
T cd03183 81 VCEIMQPEAA----GYDV--FEGRPKLAAWRKRVKEAGNPLFDEAH 120 (126)
T ss_pred HHHHHHHHhc----CCcc--cccCchHHHHHHHHHHhcchhHHHHH
Confidence 9988766432 4333 3589999999999999 99998754
No 86
>KOG3027 consensus Mitochondrial outer membrane protein Metaxin 2, Metaxin 1-binding protein [Cell wall/membrane/envelope biogenesis; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.34 E-value=2.2e-11 Score=90.08 Aligned_cols=168 Identities=16% Similarity=0.250 Sum_probs=122.8
Q ss_pred ChhhhHHHHHHHhhCCCeeEEEcCCCCChhHHHhhCCCCCcccEEEeCCeeeehhHHHHHHHHhhCCCCCCC-CCCHHHH
Q 027524 12 SPFNYRVVCALKLKGIPFELIKEDLSNKSALLLKYNPVHKKIPVLVHGGKPVCESMVILEYIEETWPQNPLM-PSDPYDR 90 (222)
Q Consensus 12 s~~~~~v~~~l~~~gi~~~~~~v~~~~~~~~~~~~~p~~g~vP~L~~~g~~l~es~aI~~yL~~~~~~~~l~-p~~~~~~ 90 (222)
..-|..|...|.++++||..+.-+ ..+| ++|- |+||.|..+...++|-.+|+.+...+.-. |- ..+..++
T Consensus 34 ~ascLAVqtfLrMcnLPf~v~~~~----Naef--mSP~-G~vPllr~g~~~~aef~pIV~fVeak~~~--l~s~lsE~qk 104 (257)
T KOG3027|consen 34 NASCLAVQTFLRMCNLPFNVRQRA----NAEF--MSPG-GKVPLLRIGKTLFAEFEPIVDFVEAKGVT--LTSWLSEDQK 104 (257)
T ss_pred chhHHHHHHHHHHcCCCceeeecC----Cccc--cCCC-CCCceeeecchhhhhhhHHHHHHHHhccc--hhhhhhhHHH
Confidence 346899999999999999988654 3444 6786 89999999999999999999999998521 22 2355678
Q ss_pred HHHHHHHHHHhhhcch--hhhhhcC------------------------------------------HHHHHHHHHHHHH
Q 027524 91 AQARFWINFAENKGAA--VWKLFRS------------------------------------------IEDQENTMKEILE 126 (222)
Q Consensus 91 a~~~~~~~~~~~~~~~--~~~~~~~------------------------------------------~~~~~~~~~~~~~ 126 (222)
+..+..+++++..+.. +...|.+ ....++....+.+
T Consensus 105 admra~vslVen~~t~aEl~~s~~de~ty~~vT~~R~gs~ypWPLs~i~~f~Krr~~~r~lk~~~W~~~~~DqVie~vdk 184 (257)
T KOG3027|consen 105 ADMRAYVSLVENLLTTAELYVSWNDEETYDEVTALRYGSVYPWPLSHILPFVKRRKALRELKVYDWDDKTMDQVIEQVDK 184 (257)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHhhhccCCCCCCcHHHHHHHHHHHHHHHHHhhcCcccccHHHHHHHHHH
Confidence 8888888777655211 1111111 1123445778888
Q ss_pred HHHHHHhcccCCCCccccCCCChhHHHHHHHHHHHHHHH-Hhhc-ccccCCCCCchHHHHHHHhccc
Q 027524 127 MLQIVEEHGLGEKKFFHGDKIGLVDIAFGSIVHWLQIIE-DIVG-VKLFESHKFPGLHAWLKNYKQV 191 (222)
Q Consensus 127 ~l~~l~e~~L~~~~~l~G~~~s~AD~~l~~~l~~~~~~~-~~~~-~~~~~~~~~p~l~~w~~~~~~~ 191 (222)
.++.| ...|+.++||.|++||-+|..+|+.+..+.... +... ... .++|++|-+++.|+++.
T Consensus 185 c~~aL-sa~L~~q~yf~g~~P~elDAlvFGHlytilTt~Lpn~ela~~--lkkys~LlefcrrIeq~ 248 (257)
T KOG3027|consen 185 CCRAL-SAQLGSQPYFTGDQPTELDALVFGHLYTILTTRLPNMELANI--LKKYSNLLEFCRRIEQQ 248 (257)
T ss_pred HHHHH-HHHhcCCCccCCCCccHHHHHHHhhhHHhhhhcCCcHHHHHH--HHHhHHHHHHHHHHHHH
Confidence 99999 999999999999999999999999877774431 1000 111 45899999999998873
No 87
>cd03206 GST_C_7 GST_C family, unknown subfamily 7; composed of uncharacterized proteins with similarity to GSTs. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins, and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal thioredoxin-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. GSH binds to the N-terminal domain while the hydrophobic substrate occupies a pocket in the C-terminal domain.
Probab=99.32 E-value=6.2e-12 Score=85.50 Aligned_cols=71 Identities=21% Similarity=0.469 Sum_probs=59.1
Q ss_pred HHHHHHHHHHHHHHHHHhcccCCCCccccCCCChhHHHHHHHHHHHHHHHHhhcccccCCCCCchHHHHHHHhcccchh
Q 027524 116 DQENTMKEILEMLQIVEEHGLGEKKFFHGDKIGLVDIAFGSIVHWLQIIEDIVGVKLFESHKFPGLHAWLKNYKQVPVV 194 (222)
Q Consensus 116 ~~~~~~~~~~~~l~~l~e~~L~~~~~l~G~~~s~AD~~l~~~l~~~~~~~~~~~~~~~~~~~~p~l~~w~~~~~~~p~~ 194 (222)
..+.....+.+.++.+ |+.|++++|++|+++|+||+++++++.+.... + ....++|+|.+|++++.++|++
T Consensus 30 ~~~~~~~~~~~~l~~l-e~~L~~~~~l~G~~~t~aDi~~~~~~~~~~~~----~---~~~~~~p~l~~~~~~~~~~p~~ 100 (100)
T cd03206 30 DKETAIARAHRLLRLL-EEHLAGRDWLAGDRPTIADVAVYPYVALAPEG----G---VDLEDYPAIRRWLARIEALPGF 100 (100)
T ss_pred HHHHHHHHHHHHHHHH-HHHHccCCccCCCCCCHHHHHHHHHHHHHhcc----C---CChhhCcHHHHHHHHHHhCcCC
Confidence 4556788999999999 99999899999999999999999988654211 2 2245899999999999999975
No 88
>cd03195 GST_C_4 GST_C family, unknown subfamily 4; composed of uncharacterized proteins with similarity to GSTs. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal thioredoxin-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. GSH binds to the N-terminal domain while the hydrophobic substrate occupies a pocket in the C-terminal domain.
Probab=99.30 E-value=7.6e-12 Score=87.16 Aligned_cols=101 Identities=17% Similarity=0.178 Sum_probs=77.1
Q ss_pred HHHHHHHHHHHHHhhhcchhh--hh----hcC---HHHHHHHHHHHHHHHHHHHhcccC-CCCccccCCCChhHHHHHHH
Q 027524 88 YDRAQARFWINFAENKGAAVW--KL----FRS---IEDQENTMKEILEMLQIVEEHGLG-EKKFFHGDKIGLVDIAFGSI 157 (222)
Q Consensus 88 ~~~a~~~~~~~~~~~~~~~~~--~~----~~~---~~~~~~~~~~~~~~l~~l~e~~L~-~~~~l~G~~~s~AD~~l~~~ 157 (222)
.+|++++.|+.++++.+.... .. +.+ +...+.....+.+.+..+ |..|+ +++|++| ++|+||++++++
T Consensus 2 ~~ra~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l-e~~l~~~~~~l~G-~fSiAD~~l~~~ 79 (114)
T cd03195 2 RQRARARQVQAWLRSDLLPIRVERSTEVVFAGAKAEPLSEAAQAAAEKLIAVA-EALLPPGAANLFG-EWCIADTDLALM 79 (114)
T ss_pred HhhHHHHHHHHHHHhhHHHHHHhCCccceecCCCCCCCCHHHHHHHHHHHHHH-HHHHhcCCCcccC-CccHHHHHHHHH
Confidence 579999999999988843321 11 111 123456677788889999 88885 5589999 599999999999
Q ss_pred HHHHHHHHHhhcccccCCCCCchHHHHHHHhcccchhhccCC
Q 027524 158 VHWLQIIEDIVGVKLFESHKFPGLHAWLKNYKQVPVVEENLP 199 (222)
Q Consensus 158 l~~~~~~~~~~~~~~~~~~~~p~l~~w~~~~~~~p~~~~~~~ 199 (222)
+.+.... |.++ . |++.+|.+|+.+||++++.++
T Consensus 80 ~~~~~~~----g~~l----~-p~l~ay~~r~~~rPa~~~~~~ 112 (114)
T cd03195 80 LNRLVLN----GDPV----P-ERLRDYARRQWQRPSVQAWLA 112 (114)
T ss_pred HHHHHHc----CCCC----C-HHHHHHHHHHHCCHHHHHHHh
Confidence 9988554 5443 2 999999999999999998764
No 89
>PF13410 GST_C_2: Glutathione S-transferase, C-terminal domain; PDB: 4DEJ_H 3IC8_A 2JL4_A 2V6K_B 3CBU_B 1JLW_B 3F6D_B 3G7I_A 3F63_A 3G7J_B ....
Probab=99.30 E-value=6.3e-12 Score=79.46 Aligned_cols=68 Identities=25% Similarity=0.497 Sum_probs=55.6
Q ss_pred HHHHHHHHHHHHHHHHHHhcccCCCCccccCCCChhHHHHHHHHHHHHHHHHhhcccccCCCCCchHHHHHHH
Q 027524 115 EDQENTMKEILEMLQIVEEHGLGEKKFFHGDKIGLVDIAFGSIVHWLQIIEDIVGVKLFESHKFPGLHAWLKN 187 (222)
Q Consensus 115 ~~~~~~~~~~~~~l~~l~e~~L~~~~~l~G~~~s~AD~~l~~~l~~~~~~~~~~~~~~~~~~~~p~l~~w~~~ 187 (222)
...++..+.+.+.++.| |..|++++|++|++||+||+++++.+.++..... +..+ .+.+|+|.+|++|
T Consensus 2 ~~~~~~~~~~~~~l~~l-e~~L~~~~fl~G~~~s~aD~~l~~~l~~~~~~~~--~~~~--~~~~p~l~~w~~r 69 (69)
T PF13410_consen 2 AAVERARAQLEAALDAL-EDHLADGPFLFGDRPSLADIALAPFLWRLRFVGP--DFDL--LEAYPNLRAWYER 69 (69)
T ss_dssp HHHHHHHHHHHHHHHHH-HHHHTTSSBTTBSS--HHHHHHHHHHHHHHHCTH--TCCH--HTTSHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH-HHHHhhCCCCCCCCCCHHHHHHHHHHHHHHHhCc--CcCc--cccCHHHHHHHhC
Confidence 35677889999999999 9999999999999999999999999999976532 2222 4699999999986
No 90
>cd03207 GST_C_8 GST_C family, unknown subfamily 8; composed of uncharacterized bacterial proteins with similarity to GSTs. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins, and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal thioredoxin-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. GSH binds to the N-terminal domain while the hydrophobic substrate occupies a pocket in the C-terminal domain.
Probab=99.29 E-value=6.9e-12 Score=85.66 Aligned_cols=75 Identities=17% Similarity=0.361 Sum_probs=64.3
Q ss_pred HHHHHHHHHHHHHHHHHhcccCCCCccccCCCChhHHHHHHHHHHHHHHHHhhcccccCCCCCchHHHHHHHhcccchhh
Q 027524 116 DQENTMKEILEMLQIVEEHGLGEKKFFHGDKIGLVDIAFGSIVHWLQIIEDIVGVKLFESHKFPGLHAWLKNYKQVPVVE 195 (222)
Q Consensus 116 ~~~~~~~~~~~~l~~l~e~~L~~~~~l~G~~~s~AD~~l~~~l~~~~~~~~~~~~~~~~~~~~p~l~~w~~~~~~~p~~~ 195 (222)
..+.....+.+.++.| |..|++++|++|+++|+||+++++++.+.... + . ...+|+|.+|++++.++|+++
T Consensus 27 ~~~~~~~~~~~~l~~l-e~~l~~~~~l~g~~~t~aDi~~~~~~~~~~~~----~--~--~~~~p~l~~w~~~~~~~p~~~ 97 (103)
T cd03207 27 ARMAGFGSYDDVLAAL-EQALAKGPYLLGERFTAADVLVGSPLGWGLQF----G--L--LPERPAFDAYIARITDRPAFQ 97 (103)
T ss_pred hhhhhhhhHHHHHHHH-HHHHccCCcccCCccCHHHHHHHHHHHHHHHc----C--C--CCCChHHHHHHHHHHcCHHHH
Confidence 3455678899999999 99999889999999999999999999887432 2 2 348999999999999999999
Q ss_pred ccCC
Q 027524 196 ENLP 199 (222)
Q Consensus 196 ~~~~ 199 (222)
++..
T Consensus 98 ~~~~ 101 (103)
T cd03207 98 RAAA 101 (103)
T ss_pred HHhc
Confidence 8775
No 91
>cd03204 GST_C_GDAP1 GST_C family, Ganglioside-induced differentiation-associated protein 1 (GDAP1) subfamily; GDAP1 was originally identified as a highly expressed gene at the differentiated stage of GD3 synthase-transfected cells. More recently, mutations in GDAP1 have been reported to cause both axonal and demyelinating autosomal-recessive Charcot-Marie-Tooth (CMT) type 4A neuropathy. CMT is characterized by slow and progressive weakness and atrophy of muscles. Sequence analysis of GDAP1 shows similarities and differences with GSTs; it appears to contain both N-terminal thioredoxin-fold and C-terminal alpha helical domains of GSTs, however, it also contains additional C-terminal transmembrane domains unlike GSTs. GDAP1 is mainly expressed in neuronal cells and is localized in the mitochondria through its transmembrane domains. It does not exhibit GST activity using standard substrates.
Probab=99.26 E-value=1.8e-11 Score=84.21 Aligned_cols=76 Identities=26% Similarity=0.426 Sum_probs=60.9
Q ss_pred HHHHHHHHHHHHHHHHHHHhcccCCC----------CccccCCCChhHHHHHHHHHHHHHHHHhhccccc--CCCCCchH
Q 027524 114 IEDQENTMKEILEMLQIVEEHGLGEK----------KFFHGDKIGLVDIAFGSIVHWLQIIEDIVGVKLF--ESHKFPGL 181 (222)
Q Consensus 114 ~~~~~~~~~~~~~~l~~l~e~~L~~~----------~~l~G~~~s~AD~~l~~~l~~~~~~~~~~~~~~~--~~~~~p~l 181 (222)
.+..+.....+.+.++.| |..|.++ +|++|+++|+||+++++.+.++... +.... ....+|+|
T Consensus 24 ~~~i~~~~~~l~~~l~~L-E~~L~~~~~~~~~~~~~~yL~Gd~~TlADi~l~~~l~~~~~~----~~~~~~~~~~~~P~l 98 (111)
T cd03204 24 VEYLKKILDELEMVLDQV-EQELQRRKEETEEQKCQLWLCGDTFTLADISLGVTLHRLKFL----GLSRRYWGNGKRPNL 98 (111)
T ss_pred HHHHHHHHHHHHHHHHHH-HHHHHcCCcccccccCCCccCCCCCCHHHHHHHHHHHHHHHc----CccccccccccChHH
Confidence 445567888999999999 9988654 5999999999999999999988543 32211 02579999
Q ss_pred HHHHHHhcccchh
Q 027524 182 HAWLKNYKQVPVV 194 (222)
Q Consensus 182 ~~w~~~~~~~p~~ 194 (222)
.+|++++.+||+|
T Consensus 99 ~~w~~rv~aRpsf 111 (111)
T cd03204 99 EAYFERVLQRESF 111 (111)
T ss_pred HHHHHHHHcCCCC
Confidence 9999999999985
No 92
>cd03179 GST_C_1 GST_C family, unknown subfamily 1; composed of uncharacterized bacterial proteins, with similarity to GSTs. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal thioredoxin-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. GSH binds to the N-terminal domain while the hydrophobic substrate occupies a pocket in the C-terminal domain.
Probab=99.26 E-value=2.5e-11 Score=83.05 Aligned_cols=93 Identities=23% Similarity=0.375 Sum_probs=71.5
Q ss_pred HHHHHHHHHHHHhhh-cchhh-----hh-----hcCHHHHHHHHHHHHHHHHHHHhcccCCCCccccCCCChhHHHHHHH
Q 027524 89 DRAQARFWINFAENK-GAAVW-----KL-----FRSIEDQENTMKEILEMLQIVEEHGLGEKKFFHGDKIGLVDIAFGSI 157 (222)
Q Consensus 89 ~~a~~~~~~~~~~~~-~~~~~-----~~-----~~~~~~~~~~~~~~~~~l~~l~e~~L~~~~~l~G~~~s~AD~~l~~~ 157 (222)
+|+++++|+.+.++. .+.+. .. ..+++..+.....+.+.++.| |..|++++|++|+++|+||++++++
T Consensus 2 ~ra~~~~wl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l-e~~L~~~~~l~g~~~slaDi~~~~~ 80 (105)
T cd03179 2 ERAQVLRWLFFEQYSHEPYIATLRFLRVYLGLGEADAEVLAFLRERGHAALAVL-EAHLAGRDFLVGDALTIADIALAAY 80 (105)
T ss_pred cHHHHHHHHHHhhcccCccceeeeeeEeeccCCCCCHHHHHHHHHHHHHHHHHH-HHHHccCccccCCCCCHHHHHHHHH
Confidence 588999999987666 33321 11 112445567888999999999 9999888999999999999999999
Q ss_pred HHHHHHHHHhhcccccCCCCCchHHHHHHHhc
Q 027524 158 VHWLQIIEDIVGVKLFESHKFPGLHAWLKNYK 189 (222)
Q Consensus 158 l~~~~~~~~~~~~~~~~~~~~p~l~~w~~~~~ 189 (222)
+.++... +.+ ..++|+|.+|+++++
T Consensus 81 ~~~~~~~----~~~---~~~~p~l~~~~~~~~ 105 (105)
T cd03179 81 THVADEG----GFD---LADYPAIRAWLARIE 105 (105)
T ss_pred HHhcccc----CCC---hHhCccHHHHHHhhC
Confidence 9887432 322 357999999999874
No 93
>PRK10638 glutaredoxin 3; Provisional
Probab=99.26 E-value=4.2e-11 Score=78.51 Aligned_cols=73 Identities=21% Similarity=0.246 Sum_probs=65.3
Q ss_pred CcceEEecccCChhhhHHHHHHHhhCCCeeEEEcCCC-CChhHHHhhCCCCCcccEEEeCCeeeehhHHHHHHHH
Q 027524 1 MAEVKLHGGLLSPFNYRVVCALKLKGIPFELIKEDLS-NKSALLLKYNPVHKKIPVLVHGGKPVCESMVILEYIE 74 (222)
Q Consensus 1 M~~~~L~~~~~s~~~~~v~~~l~~~gi~~~~~~v~~~-~~~~~~~~~~p~~g~vP~L~~~g~~l~es~aI~~yL~ 74 (222)
|+++++|+.+.||||++++.+|+..|++|+.+.++.. ...+++.+.++. +++|++..+|..|.+...+.++-.
T Consensus 1 m~~v~ly~~~~Cp~C~~a~~~L~~~gi~y~~~dv~~~~~~~~~l~~~~g~-~~vP~i~~~g~~igG~~~~~~~~~ 74 (83)
T PRK10638 1 MANVEIYTKATCPFCHRAKALLNSKGVSFQEIPIDGDAAKREEMIKRSGR-TTVPQIFIDAQHIGGCDDLYALDA 74 (83)
T ss_pred CCcEEEEECCCChhHHHHHHHHHHcCCCcEEEECCCCHHHHHHHHHHhCC-CCcCEEEECCEEEeCHHHHHHHHH
Confidence 8889999999999999999999999999999999766 356778899998 899999999999999988877643
No 94
>TIGR02190 GlrX-dom Glutaredoxin-family domain. This C-terminal domain with homology to glutaredoxin is fused to an N-terminal peroxiredoxin-like domain.
Probab=99.25 E-value=4.6e-11 Score=77.58 Aligned_cols=71 Identities=24% Similarity=0.270 Sum_probs=63.3
Q ss_pred ceEEecccCChhhhHHHHHHHhhCCCeeEEEcCCCCChhHHHhhCCCCCcccEEEeCCeeeehhHHHHHHHH
Q 027524 3 EVKLHGGLLSPFNYRVVCALKLKGIPFELIKEDLSNKSALLLKYNPVHKKIPVLVHGGKPVCESMVILEYIE 74 (222)
Q Consensus 3 ~~~L~~~~~s~~~~~v~~~l~~~gi~~~~~~v~~~~~~~~~~~~~p~~g~vP~L~~~g~~l~es~aI~~yL~ 74 (222)
+++||+.++||+|.+++.+|+..||+|+.+.++-+....++...++. .++|++..+|..|.++..|.+||+
T Consensus 9 ~V~ly~~~~Cp~C~~ak~~L~~~gi~y~~idi~~~~~~~~~~~~~g~-~~vP~i~i~g~~igG~~~l~~~l~ 79 (79)
T TIGR02190 9 SVVVFTKPGCPFCAKAKATLKEKGYDFEEIPLGNDARGRSLRAVTGA-TTVPQVFIGGKLIGGSDELEAYLA 79 (79)
T ss_pred CEEEEECCCCHhHHHHHHHHHHcCCCcEEEECCCChHHHHHHHHHCC-CCcCeEEECCEEEcCHHHHHHHhC
Confidence 58999999999999999999999999999998766555666677776 799999999999999999999984
No 95
>cd03192 GST_C_Sigma_like GST_C family, Class Sigma_like; composed of GSTs belonging to class Sigma and similar proteins, including GSTs from class Mu, Pi, and Alpha. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins, and products of oxidative stress. The GST fold contains an N-terminal thioredoxin-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. GSH binds to the N-terminal domain while the hydrophobic substrate occupies a pocket in the C-terminal domain. Vertebrate class Sigma GSTs are characterized as GSH-dependent hematopoietic prostaglandin (PG) D synthases and are responsible for the production of PGD2 by catalyzing the isomerization of PGH2. The functions of PGD2 include the maintenance of body temperature, inhibition
Probab=99.20 E-value=6.8e-11 Score=80.83 Aligned_cols=94 Identities=20% Similarity=0.279 Sum_probs=72.0
Q ss_pred HHHHHHHHHHHHhhhcchhh-hhhc------CHHHHHHHHHHHHHHHHHHHhcccCC--CCccccCCCChhHHHHHHHHH
Q 027524 89 DRAQARFWINFAENKGAAVW-KLFR------SIEDQENTMKEILEMLQIVEEHGLGE--KKFFHGDKIGLVDIAFGSIVH 159 (222)
Q Consensus 89 ~~a~~~~~~~~~~~~~~~~~-~~~~------~~~~~~~~~~~~~~~l~~l~e~~L~~--~~~l~G~~~s~AD~~l~~~l~ 159 (222)
++++++.+++.+++....+. .++. ..+........+.+.++.| |+.|++ ++|++|+++|+||+++++++.
T Consensus 2 e~~~v~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l-e~~l~~~~~~~~~G~~~s~aDi~l~~~~~ 80 (104)
T cd03192 2 EAARVDALVDTIADLRAEFAKYFYEKDGEEKKEKKKEFLKEAIPKYLKKL-EKILKENGGGYLVGDKLTWADLVVFDVLD 80 (104)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHhhcCchHHHHHHHHHHHHHhhHHHHHHH-HHHHHHcCCCeeeCCCccHHHHHHHHHHH
Confidence 47888999888877755553 2332 2445667788899999999 999976 899999999999999999998
Q ss_pred HHHHHHHhhcccccCCCCCchHHHHHHHh
Q 027524 160 WLQIIEDIVGVKLFESHKFPGLHAWLKNY 188 (222)
Q Consensus 160 ~~~~~~~~~~~~~~~~~~~p~l~~w~~~~ 188 (222)
++... +... ....+|+|.+|++++
T Consensus 81 ~~~~~----~~~~-~~~~~p~l~~~~~~~ 104 (104)
T cd03192 81 YLLYL----DPKL-LLKKYPKLKALRERV 104 (104)
T ss_pred HHHhh----Cchh-hHHhChhHHHHHHhC
Confidence 88544 2221 134799999999885
No 96
>PF14497 GST_C_3: Glutathione S-transferase, C-terminal domain; PDB: 3AY8_A 2UZ8_B 1V2A_C 2HNL_A 2YV9_B 3H1N_A 3FR6_A 1Q4J_B 1PA3_B 1OKT_B ....
Probab=99.13 E-value=4.6e-11 Score=81.02 Aligned_cols=95 Identities=28% Similarity=0.485 Sum_probs=62.9
Q ss_pred CHHHHHHHHHHHHHHhhh-cchhhhhhcCHHHHHHHHHHHHHHHHHHHhcccCCCC--ccccCCCChhHHHHHHHHHHHH
Q 027524 86 DPYDRAQARFWINFAENK-GAAVWKLFRSIEDQENTMKEILEMLQIVEEHGLGEKK--FFHGDKIGLVDIAFGSIVHWLQ 162 (222)
Q Consensus 86 ~~~~~a~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~l~~l~e~~L~~~~--~l~G~~~s~AD~~l~~~l~~~~ 162 (222)
++..++.++.|+++.. . ..............+.....+.+.+..+ ++.|+.++ |++|++||+||+++++.|..+.
T Consensus 2 ~~~~~a~i~~W~~f~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l-~~~L~~~~~~~l~G~~~T~AD~~v~~~l~~~~ 79 (99)
T PF14497_consen 2 DPYWRALIDRWLDFSV-AFRRRKARLEKDEASGDFSREELPKALKIL-EKHLAERGGDFLVGDKPTLADIAVFGFLASLR 79 (99)
T ss_dssp --TTHHHHHHHHH-GH-CCHCCHCHHHHHCCHHHHHHHHHHHHHHHH-HHHHHHTSSSSSSSSS--HHHHHHHHHHHHHH
T ss_pred chHHHHHHHHHHhccc-hhhhHHHHHHHhhhhHHhhHHHHHHHHHHH-HHHHHcCCCeeecCCCCCHHHHHHHHHHHHHh
Confidence 3455777778887431 1 0000011122345567788889999999 99997655 9999999999999999886663
Q ss_pred HHHHhhcccccCCCCCchHHHHHHHhcc
Q 027524 163 IIEDIVGVKLFESHKFPGLHAWLKNYKQ 190 (222)
Q Consensus 163 ~~~~~~~~~~~~~~~~p~l~~w~~~~~~ 190 (222)
. + . + .+++|+|.+|++||++
T Consensus 80 ~-----~-~-~-~~~~p~L~~w~~ri~~ 99 (99)
T PF14497_consen 80 W-----A-D-F-PKDYPNLVRWYERIEE 99 (99)
T ss_dssp C-----C-H-H-TTTCHHHHHHHHHHHT
T ss_pred h-----c-c-c-ccccHHHHHHHHhhcC
Confidence 1 1 1 1 1589999999999974
No 97
>cd03194 GST_C_3 GST_C family, unknown subfamily 3; composed of uncharacterized proteins with similarity to GSTs. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins, and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal thioredoxin-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. GSH binds to the N-terminal domain while the hydrophobic substrate occupies a pocket in the C-terminal domain.
Probab=99.13 E-value=3.2e-10 Score=78.94 Aligned_cols=72 Identities=21% Similarity=0.362 Sum_probs=54.1
Q ss_pred HHHHHHHHHHHHHHHHhccc---CCCCccccCCCChhHHHHHHHHHHHHHHHHhhcccccCCCCCchHHHHHHHhcccch
Q 027524 117 QENTMKEILEMLQIVEEHGL---GEKKFFHGDKIGLVDIAFGSIVHWLQIIEDIVGVKLFESHKFPGLHAWLKNYKQVPV 193 (222)
Q Consensus 117 ~~~~~~~~~~~l~~l~e~~L---~~~~~l~G~~~s~AD~~l~~~l~~~~~~~~~~~~~~~~~~~~p~l~~w~~~~~~~p~ 193 (222)
.+.....+.+.++.+ |.++ ++++|++|+ +|+||+++++++.+.... +.+ ..|+|.+|++++.++|+
T Consensus 39 ~~~~~~~~~~~~~~l-e~~l~~~~~~~yl~Gd-~T~ADi~l~~~~~~~~~~----~~~-----~~P~l~~~~~rv~~rPs 107 (114)
T cd03194 39 SEAVQADIARIEAIW-AECLARFQGGPFLFGD-FSIADAFFAPVVTRFRTY----GLP-----LSPAAQAYVDALLAHPA 107 (114)
T ss_pred CHHHHHHHHHHHHHH-HHHHHHcCCCCCCCCC-CcHHHHHHHHHHHHHHHc----CCC-----CCHHHHHHHHHHHCCHH
Confidence 344455555555566 5554 567899999 999999999998888432 322 23999999999999999
Q ss_pred hhccCC
Q 027524 194 VEENLP 199 (222)
Q Consensus 194 ~~~~~~ 199 (222)
+++.++
T Consensus 108 v~~~~~ 113 (114)
T cd03194 108 MQEWIA 113 (114)
T ss_pred HHHHHh
Confidence 998764
No 98
>cd03029 GRX_hybridPRX5 Glutaredoxin (GRX) family, PRX5 hybrid subfamily; composed of hybrid proteins containing peroxiredoxin (PRX) and GRX domains, which is found in some pathogenic bacteria and cyanobacteria. PRXs are thiol-specific antioxidant (TSA) proteins that confer a protective antioxidant role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either thioredoxin, glutathione, trypanothione and AhpF. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins. PRX-GRX hybrid proteins from Haemophilus influenza and Neisseria meningitis exhibit GSH-dependent peroxidase activity. The flow of reducing equivalents in the catalytic cycle of the hybrid protein goes from NADPH - GSH reductase - GSH - GRX domain of hybrid - PRX domain of hybrid - peroxide substrate.
Probab=99.10 E-value=7.8e-10 Score=70.41 Aligned_cols=71 Identities=23% Similarity=0.232 Sum_probs=60.9
Q ss_pred ceEEecccCChhhhHHHHHHHhhCCCeeEEEcCCCCChhHHHhhCCCCCcccEEEeCCeeeehhHHHHHHHH
Q 027524 3 EVKLHGGLLSPFNYRVVCALKLKGIPFELIKEDLSNKSALLLKYNPVHKKIPVLVHGGKPVCESMVILEYIE 74 (222)
Q Consensus 3 ~~~L~~~~~s~~~~~v~~~l~~~gi~~~~~~v~~~~~~~~~~~~~p~~g~vP~L~~~g~~l~es~aI~~yL~ 74 (222)
+++||+.++||+|.+++-+|...|++|+.+.++.......+...... .++|++..||..+.++..|.+||+
T Consensus 2 ~v~lys~~~Cp~C~~ak~~L~~~~i~~~~~~v~~~~~~~~~~~~~g~-~~vP~ifi~g~~igg~~~l~~~l~ 72 (72)
T cd03029 2 SVSLFTKPGCPFCARAKAALQENGISYEEIPLGKDITGRSLRAVTGA-MTVPQVFIDGELIGGSDDLEKYFA 72 (72)
T ss_pred eEEEEECCCCHHHHHHHHHHHHcCCCcEEEECCCChhHHHHHHHhCC-CCcCeEEECCEEEeCHHHHHHHhC
Confidence 48999999999999999999999999999998765434445555565 689999999999999999999974
No 99
>cd03078 GST_N_Metaxin1_like GST_N family, Metaxin subfamily, Metaxin 1-like proteins; composed of metaxins 1 and 3, and similar proteins including Tom37 from fungi. Mammalian metaxin (or metaxin 1) and the fungal protein Tom37 are components of preprotein import complexes of the mitochondrial outer membrane. Metaxin extends to the cytosol and is anchored to the mitochondrial membrane through its C-terminal domain. In mice, metaxin is required for embryonic development. Like the murine gene, the human metaxin gene is located downstream to the glucocerebrosidase (GBA) pseudogene and is convergently transcribed. Inherited deficiency of GBA results in Gaucher disease, which presents many diverse clinical phenotypes. Alterations in the metaxin gene, in addition to GBA mutations, may be associated with Gaucher disease. Genome sequencing shows that a third metaxin gene also exists in zebrafish, Xenopus, chicken and mammals.
Probab=99.08 E-value=7.7e-10 Score=70.51 Aligned_cols=59 Identities=24% Similarity=0.475 Sum_probs=50.5
Q ss_pred cCChhhhHHHHHHHhhCCCeeEEEcCCCCChhHHHhhCCCCCcccEEEeCCeeeehhHHHHHHHHhh
Q 027524 10 LLSPFNYRVVCALKLKGIPFELIKEDLSNKSALLLKYNPVHKKIPVLVHGGKPVCESMVILEYIEET 76 (222)
Q Consensus 10 ~~s~~~~~v~~~l~~~gi~~~~~~v~~~~~~~~~~~~~p~~g~vP~L~~~g~~l~es~aI~~yL~~~ 76 (222)
+.||+|.++.++|.++|+||+.+..... ..+|. |++|+|+++|..|.+|..|++||.++
T Consensus 14 s~sp~clk~~~~Lr~~~~~~~v~~~~n~-------~~sp~-gkLP~l~~~~~~i~d~~~Ii~~L~~~ 72 (73)
T cd03078 14 SVDPECLAVLAYLKFAGAPLKVVPSNNP-------WRSPT-GKLPALLTSGTKISGPEKIIEYLRKQ 72 (73)
T ss_pred cCCHHHHHHHHHHHcCCCCEEEEecCCC-------CCCCC-CccCEEEECCEEecChHHHHHHHHHc
Confidence 4589999999999999999998855321 23577 89999999999999999999999875
No 100
>cd00299 GST_C_family Glutathione S-transferase (GST) family, C-terminal alpha helical domain; a large, diverse group of cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. In addition, GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. This family, also referred to as soluble GSTs, is the largest family of GSH transferases and is only distantly related to the mitochondrial GSTs (GSTK). Soluble GSTs bear no structural similarity to microsomal GSTs (MAPEG family) and display additional activities unique to their group, such as catalyzing thiolysis, reduction and isomerization of certain compounds. The GST fold contains an N-terminal thioredoxin-fold domain and a C-terminal alpha helical domain, with an activ
Probab=99.07 E-value=8.2e-10 Score=74.41 Aligned_cols=70 Identities=26% Similarity=0.540 Sum_probs=58.1
Q ss_pred HHHHHHHHHHHHHHHHHHHhcccCCCCccccCCCChhHHHHHHHHHHHHHHHHhhcccccCCCCCchHHHHHHHh
Q 027524 114 IEDQENTMKEILEMLQIVEEHGLGEKKFFHGDKIGLVDIAFGSIVHWLQIIEDIVGVKLFESHKFPGLHAWLKNY 188 (222)
Q Consensus 114 ~~~~~~~~~~~~~~l~~l~e~~L~~~~~l~G~~~s~AD~~l~~~l~~~~~~~~~~~~~~~~~~~~p~l~~w~~~~ 188 (222)
.+..+...+.+.+.++.| |+.|++++|++|+++|+||+++++++.++.......+ . .+.+|++.+|++++
T Consensus 31 ~~~~~~~~~~~~~~~~~l-~~~L~~~~~~~g~~~t~aDi~~~~~l~~~~~~~~~~~--~--~~~~p~l~~~~~~~ 100 (100)
T cd00299 31 EAALEEAREELAAALAAL-EKLLAGRPYLAGDRFSLADIALAPVLARLDLLGPLLG--L--LDEYPRLAAWYDRL 100 (100)
T ss_pred HHHHHHHHHHHHHHHHHH-HHHHccCCCCCCCCcCHHHHHHHHHHHHHHHhhhhhh--h--hccCccHHHHHHhC
Confidence 556677888999999999 9999989999999999999999999999965532211 1 35899999999875
No 101
>cd03202 GST_C_etherase_LigE GST_C family, Beta etherase LigE subfamily; composed of proteins similar to Sphingomonas paucimobilis beta etherase, LigE, a GST-like protein that catalyzes the cleavage of the beta-aryl ether linkages present in low-moleculer weight lignins using GSH as the hydrogen donor. This reaction is an essential step in the degradation of lignin, a complex phenolic polymer that is the most abundant aromatic material in the biosphere. The beta etherase activity of LigE is enantioselective and it complements the activity of the other GST family beta etherase, LigF. The GST fold contains an N-terminal thioredoxin-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains.
Probab=99.06 E-value=4.5e-10 Score=79.35 Aligned_cols=68 Identities=15% Similarity=0.255 Sum_probs=57.1
Q ss_pred HHHHHHHHHHHHHHHHhcccCCCCccccCCCChhHHHHHHHHHHHHHHHHhhcccccCCCCCchHHHHHHHhcc
Q 027524 117 QENTMKEILEMLQIVEEHGLGEKKFFHGDKIGLVDIAFGSIVHWLQIIEDIVGVKLFESHKFPGLHAWLKNYKQ 190 (222)
Q Consensus 117 ~~~~~~~~~~~l~~l~e~~L~~~~~l~G~~~s~AD~~l~~~l~~~~~~~~~~~~~~~~~~~~p~l~~w~~~~~~ 190 (222)
.+.....+.+.++.+ |+.|++++|+.|+++|+||+++++.+.+..... +... .+.+|+|.+|++||.+
T Consensus 56 ~~~~~~~~~~~l~~l-~~~L~~~~fl~Gd~~t~AD~~l~~~l~~~~~~~---~~~~--~~~~p~l~~W~~r~~~ 123 (124)
T cd03202 56 REAALANFRAALEPL-RATLKGQPFLGGAAPNYADYIVFGGFQWARIVS---PFPL--LEEDDPVYDWFERCLD 123 (124)
T ss_pred hHHHHHHHHHHHHHH-HHHHcCCCccCCCCCchhHHHHHHHHHHHHHcC---cccc--cccCChHHHHHHHHhc
Confidence 356778899999999 999999999999999999999999998885421 3332 3589999999999976
No 102
>cd03193 GST_C_Metaxin GST_C family, Metaxin subfamily; composed of metaxins and related proteins. Metaxin 1 is a component of a preprotein import complex of the mitochondrial outer membrane. It extends to the cytosol and is anchored to the mitochondrial membrane through its C-terminal domain. In mice, metaxin is required for embryonic development. In humans, alterations in the metaxin gene may be associated with Gaucher disease. Metaxin 2 binds to metaxin 1 and may also play a role in protein translocation into the mitochondria. Genome sequencing shows that a third metaxin gene also exists in zebrafish, Xenopus, chicken, and mammals. Sequence analysis suggests that all three metaxins share a common ancestry and that they possess similarity to GSTs. Also included in the subfamily are uncharacterized proteins with similarity to metaxins, including a novel GST from Rhodococcus with toluene o-monooxygenase and glutamylcysteine synthetase activities. Other members are the cadmium-inducible
Probab=99.00 E-value=7e-10 Score=73.50 Aligned_cols=68 Identities=19% Similarity=0.256 Sum_probs=53.4
Q ss_pred HHHHHHHHHHHHHHhcccCCCCccccCCCChhHHHHHHHHHHHHHHHHhhcccc--cCCCCCchHHHHHHHhc
Q 027524 119 NTMKEILEMLQIVEEHGLGEKKFFHGDKIGLVDIAFGSIVHWLQIIEDIVGVKL--FESHKFPGLHAWLKNYK 189 (222)
Q Consensus 119 ~~~~~~~~~l~~l~e~~L~~~~~l~G~~~s~AD~~l~~~l~~~~~~~~~~~~~~--~~~~~~p~l~~w~~~~~ 189 (222)
.....+.+.++.+ |+.|++++|++|+++|+||+++++.+.++... .. +... ...+.+|+|.+|++++.
T Consensus 19 ~~~~~~~~~l~~l-e~~L~~~~yl~Gd~~t~aDi~l~~~l~~~~~~-~~-~~~~~~~~~~~~p~l~~~~~r~~ 88 (88)
T cd03193 19 EIYSLAKKDLKAL-SDLLGDKKFFFGDKPTSLDATVFGHLASILYA-PL-PNSALQLILKEYPNLVEYCERIR 88 (88)
T ss_pred HHHHHHHHHHHHH-HHHhCCCCccCCCCCCHHHHHHHHHHHHHHhc-CC-CChHHHHHHHhCcHHHHHHHHhC
Confidence 6677889999999 99999999999999999999999998887432 00 1100 01347999999999974
No 103
>KOG3028 consensus Translocase of outer mitochondrial membrane complex, subunit TOM37/Metaxin 1 [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.96 E-value=3.2e-08 Score=78.18 Aligned_cols=167 Identities=20% Similarity=0.332 Sum_probs=116.6
Q ss_pred ChhhhHHHHHHHhhCCCeeEEEcCCCCChhHHHhhCCCCCcccEEEe-CCeeeehhHHHHHHHHhhCCCCCCCCC-CHHH
Q 027524 12 SPFNYRVVCALKLKGIPFELIKEDLSNKSALLLKYNPVHKKIPVLVH-GGKPVCESMVILEYIEETWPQNPLMPS-DPYD 89 (222)
Q Consensus 12 s~~~~~v~~~l~~~gi~~~~~~v~~~~~~~~~~~~~p~~g~vP~L~~-~g~~l~es~aI~~yL~~~~~~~~l~p~-~~~~ 89 (222)
++-|..+.+++.+++-|.+++..+... .+|. |++|+|.. +|..++.-.-|+.||.....+..+-+. ...+
T Consensus 17 d~~sL~~l~y~kl~~~~l~v~~ssN~~-------~s~s-g~LP~l~~~ng~~va~~~~iv~~L~k~~~ky~~d~dl~~kq 88 (313)
T KOG3028|consen 17 DPDSLAALIYLKLAGAPLKVVVSSNPW-------RSPS-GKLPYLITDNGTKVAGPVKIVQFLKKNTKKYNLDADLSAKQ 88 (313)
T ss_pred ChhHHHHHHHHHHhCCCceeEeecCCC-------CCCC-CCCCeEEecCCceeccHHHHHHHHHHhcccCCcCccHHHHH
Confidence 788999999999999777777665432 2466 89999996 579999999999999884222112222 2567
Q ss_pred HHHHHHHHHHHhhh-cchh-hhhhcC-------------------------------------------HHHHHHHHHHH
Q 027524 90 RAQARFWINFAENK-GAAV-WKLFRS-------------------------------------------IEDQENTMKEI 124 (222)
Q Consensus 90 ~a~~~~~~~~~~~~-~~~~-~~~~~~-------------------------------------------~~~~~~~~~~~ 124 (222)
+++...|.+++... .+.+ ..+|-+ .+...+.....
T Consensus 89 ~a~~~a~~sll~~~l~~a~~~t~~v~~~Ny~e~Tkk~yak~l~fP~n~~~p~~l~~qAk~rl~l~~g~~~~~e~~i~~~A 168 (313)
T KOG3028|consen 89 LADTLAFMSLLEENLEPALLYTFWVDTENYNEVTKKWYAKALPFPLNYILPGKLQRQAKERLQLTLGELTEREDQIYKDA 168 (313)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcccchhhHhHHHHHhcCCCchhhcchhhhHHHHHHHHHHHhCCchhhHHHHHHHH
Confidence 78888887776655 2222 111100 11233456667
Q ss_pred HHHHHHHHhcccCCCCccccCCCChhHHHHHHHHHHHHHH-HHh--hcccccCCCCCchHHHHHHHhcc
Q 027524 125 LEMLQIVEEHGLGEKKFFHGDKIGLVDIAFGSIVHWLQII-EDI--VGVKLFESHKFPGLHAWLKNYKQ 190 (222)
Q Consensus 125 ~~~l~~l~e~~L~~~~~l~G~~~s~AD~~l~~~l~~~~~~-~~~--~~~~~~~~~~~p~l~~w~~~~~~ 190 (222)
.++++.| .+.|+...|++|++||--|+.++..+..+-.. .+. .... ...++||.++++++..
T Consensus 169 ska~~~L-S~~Lgs~kffFgd~psslDa~lfs~la~~~~~~Lp~~~Lq~~---l~~~~NL~~~~~~i~s 233 (313)
T KOG3028|consen 169 SKALNLL-STLLGSKKFFFGDKPSSLDALLFSYLAILLQVALPNDSLQVH---LLAHKNLVRYVERIRS 233 (313)
T ss_pred HHHHHHH-HHHhcCceEeeCCCCchHHHHHHHHHHHHHhccCCchhHHHH---HHhcchHHHHHHHHHH
Confidence 8889999 99999999999999999999999988884221 111 0111 2359999999999986
No 104
>cd03027 GRX_DEP Glutaredoxin (GRX) family, Dishevelled, Egl-10, and Pleckstrin (DEP) subfamily; composed of uncharacterized proteins containing a GRX domain and additional domains DEP and DUF547, both of which have unknown functions. GRX is a glutathione (GSH) dependent reductase containing a redox active CXXC motif in a TRX fold. It has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. By altering the redox state of target proteins, GRX is involved in many cellular functions.
Probab=98.88 E-value=1.2e-08 Score=65.11 Aligned_cols=68 Identities=21% Similarity=0.158 Sum_probs=58.2
Q ss_pred ceEEecccCChhhhHHHHHHHhhCCCeeEEEcCCC-CChhHHHhhCCCCCcccEEEeCCeeeehhHHHHH
Q 027524 3 EVKLHGGLLSPFNYRVVCALKLKGIPFELIKEDLS-NKSALLLKYNPVHKKIPVLVHGGKPVCESMVILE 71 (222)
Q Consensus 3 ~~~L~~~~~s~~~~~v~~~l~~~gi~~~~~~v~~~-~~~~~~~~~~p~~g~vP~L~~~g~~l~es~aI~~ 71 (222)
.++||+.+.||+|++++.+|+..||+|+.+.++-. ...+++.+.++. +++|++..+|..|..-....+
T Consensus 2 ~v~ly~~~~C~~C~ka~~~L~~~gi~~~~~di~~~~~~~~el~~~~g~-~~vP~v~i~~~~iGg~~~~~~ 70 (73)
T cd03027 2 RVTIYSRLGCEDCTAVRLFLREKGLPYVEINIDIFPERKAELEERTGS-SVVPQIFFNEKLVGGLTDLKS 70 (73)
T ss_pred EEEEEecCCChhHHHHHHHHHHCCCceEEEECCCCHHHHHHHHHHhCC-CCcCEEEECCEEEeCHHHHHh
Confidence 47999999999999999999999999999988754 445678888887 799999999998877665543
No 105
>cd02976 NrdH NrdH-redoxin (NrdH) family; NrdH is a small monomeric protein with a conserved redox active CXXC motif within a TRX fold, characterized by a glutaredoxin (GRX)-like sequence and TRX-like activity profile. In vitro, it displays protein disulfide reductase activity that is dependent on TRX reductase, not glutathione (GSH). It is part of the NrdHIEF operon, where NrdEF codes for class Ib ribonucleotide reductase (RNR-Ib), an efficient enzyme at low oxygen levels. Under these conditions when GSH is mostly conjugated to spermidine, NrdH can still function and act as a hydrogen donor for RNR-Ib. It has been suggested that the NrdHEF system may be the oldest RNR reducing system, capable of functioning in a microaerophilic environment, where GSH was not yet available. NrdH from Corynebacterium ammoniagenes can form domain-swapped dimers, although it is unknown if this happens in vivo. Domain-swapped dimerization, which results in the blocking of the TRX reductase binding site, cou
Probab=98.87 E-value=1.1e-08 Score=64.90 Aligned_cols=63 Identities=27% Similarity=0.327 Sum_probs=53.9
Q ss_pred ceEEecccCChhhhHHHHHHHhhCCCeeEEEcCCC-CChhHHHhhCCCCCcccEEEeCCeeeehh
Q 027524 3 EVKLHGGLLSPFNYRVVCALKLKGIPFELIKEDLS-NKSALLLKYNPVHKKIPVLVHGGKPVCES 66 (222)
Q Consensus 3 ~~~L~~~~~s~~~~~v~~~l~~~gi~~~~~~v~~~-~~~~~~~~~~p~~g~vP~L~~~g~~l~es 66 (222)
++++|+.++||+|++++.+|...|++|..+.++.. ...+++.+.+|. +++|++.++|..+.+.
T Consensus 1 ~v~l~~~~~c~~c~~~~~~l~~~~i~~~~~~i~~~~~~~~~~~~~~~~-~~vP~i~~~~~~i~g~ 64 (73)
T cd02976 1 EVTVYTKPDCPYCKATKRFLDERGIPFEEVDVDEDPEALEELKKLNGY-RSVPVVVIGDEHLSGF 64 (73)
T ss_pred CEEEEeCCCChhHHHHHHHHHHCCCCeEEEeCCCCHHHHHHHHHHcCC-cccCEEEECCEEEecC
Confidence 47999999999999999999999999999988765 345678888898 8999999988776553
No 106
>TIGR02196 GlrX_YruB Glutaredoxin-like protein, YruB-family. This glutaredoxin-like protein family contains the conserved CxxC motif and includes the Clostridium pasteurianum protein YruB which has been cloned from a rubredoxin operon. Somewhat related to NrdH, it is unknown whether this protein actually interacts with glutathione/glutathione reducatase, or, like NrdH, some other reductant system.
Probab=98.86 E-value=1.5e-08 Score=64.34 Aligned_cols=69 Identities=25% Similarity=0.258 Sum_probs=56.8
Q ss_pred eEEecccCChhhhHHHHHHHhhCCCeeEEEcCCC-CChhHHHhhCCCCCcccEEEeCCeee--ehhHHHHHHH
Q 027524 4 VKLHGGLLSPFNYRVVCALKLKGIPFELIKEDLS-NKSALLLKYNPVHKKIPVLVHGGKPV--CESMVILEYI 73 (222)
Q Consensus 4 ~~L~~~~~s~~~~~v~~~l~~~gi~~~~~~v~~~-~~~~~~~~~~p~~g~vP~L~~~g~~l--~es~aI~~yL 73 (222)
++||+.++||+|++++.+|+..|++|..+.++.. ...+++.+.++. +.+|++..+|..+ +++..|.++|
T Consensus 2 i~lf~~~~C~~C~~~~~~l~~~~i~~~~vdi~~~~~~~~~~~~~~~~-~~vP~~~~~~~~~~g~~~~~i~~~i 73 (74)
T TIGR02196 2 VKVYTTPWCPPCKKAKEYLTSKGIAFEEIDVEKDSAAREEVLKVLGQ-RGVPVIVIGHKIIVGFDPEKLDQLL 73 (74)
T ss_pred EEEEcCCCChhHHHHHHHHHHCCCeEEEEeccCCHHHHHHHHHHhCC-CcccEEEECCEEEeeCCHHHHHHHh
Confidence 7999999999999999999999999999888654 234556777887 7999999988877 5666666665
No 107
>PF14834 GST_C_4: Glutathione S-transferase, C-terminal domain; PDB: 3BBY_A.
Probab=98.85 E-value=1.9e-08 Score=68.05 Aligned_cols=103 Identities=19% Similarity=0.222 Sum_probs=71.5
Q ss_pred CHHHHHHHHHHHHHHhhhcchhhh------hhcC---HHHHHHHHHHHHHHHHHHHhcccC-CCCccccCCCChhHHHHH
Q 027524 86 DPYDRAQARFWINFAENKGAAVWK------LFRS---IEDQENTMKEILEMLQIVEEHGLG-EKKFFHGDKIGLVDIAFG 155 (222)
Q Consensus 86 ~~~~~a~~~~~~~~~~~~~~~~~~------~~~~---~~~~~~~~~~~~~~l~~l~e~~L~-~~~~l~G~~~s~AD~~l~ 155 (222)
|..+|++.+++..|+.+.+.+++. .+.. ..-.+.+...+.+.+... +.+|. +++||+|+ .|+||..++
T Consensus 1 D~~~RArAR~vqAwlrSdf~~lR~Erpt~vvf~~~~~~pLs~~a~~~a~kL~~~a-~~ll~~g~~~LFGe-wsIAD~dlA 78 (117)
T PF14834_consen 1 DRQERARARQVQAWLRSDFMALRQERPTNVVFRGARKPPLSEAAQAAAQKLIAVA-ERLLADGGPNLFGE-WSIADADLA 78 (117)
T ss_dssp SHHHHHHHHHHHHHHHHS-HHHHHHS-THHHHS--------HHHHHHHHHHHHHH-HHHTTT--SSTTSS---HHHHHHH
T ss_pred CHHHHHHHHHHHHHHHcccHHHHhhCChhhhhcCCCCCCCCHHHHHHHHHHHHHH-HHHhccCCCCcccc-chHHHHHHH
Confidence 457899999999999988776651 2221 223456677778888888 77776 67899995 999999999
Q ss_pred HHHHHHHHHHHhhcccccCCCCCchHHHHHHHhcccchhhccCC
Q 027524 156 SIVHWLQIIEDIVGVKLFESHKFPGLHAWLKNYKQVPVVEENLP 199 (222)
Q Consensus 156 ~~l~~~~~~~~~~~~~~~~~~~~p~l~~w~~~~~~~p~~~~~~~ 199 (222)
+++.++... |.++ -+.+..|.++.-++|++++.+.
T Consensus 79 ~ml~Rl~~~----gd~v-----P~~l~~Ya~~qwqrpsVQ~Wla 113 (117)
T PF14834_consen 79 LMLNRLVTY----GDPV-----PERLADYAERQWQRPSVQRWLA 113 (117)
T ss_dssp HHHHHHHTT----T---------HHHHHHHHHHHT-HHHHHHHH
T ss_pred HHHHHHHHc----CCCC-----CHHHHHHHHHHHCCHHHHHHHH
Confidence 999999543 5333 3799999999999999998764
No 108
>PRK10329 glutaredoxin-like protein; Provisional
Probab=98.84 E-value=1.8e-08 Score=65.50 Aligned_cols=61 Identities=18% Similarity=0.231 Sum_probs=49.4
Q ss_pred ceEEecccCChhhhHHHHHHHhhCCCeeEEEcCCCCChhHHHhhCCCCCcccEEEeCCeeee
Q 027524 3 EVKLHGGLLSPFNYRVVCALKLKGIPFELIKEDLSNKSALLLKYNPVHKKIPVLVHGGKPVC 64 (222)
Q Consensus 3 ~~~L~~~~~s~~~~~v~~~l~~~gi~~~~~~v~~~~~~~~~~~~~p~~g~vP~L~~~g~~l~ 64 (222)
.++||+.++||+|.+++-+|+..||+|+.+.++-+....+....++. .+||+++.++..+.
T Consensus 2 ~v~lYt~~~Cp~C~~ak~~L~~~gI~~~~idi~~~~~~~~~~~~~g~-~~vPvv~i~~~~~~ 62 (81)
T PRK10329 2 RITIYTRNDCVQCHATKRAMESRGFDFEMINVDRVPEAAETLRAQGF-RQLPVVIAGDLSWS 62 (81)
T ss_pred EEEEEeCCCCHhHHHHHHHHHHCCCceEEEECCCCHHHHHHHHHcCC-CCcCEEEECCEEEe
Confidence 38999999999999999999999999999999765333333344676 79999999886654
No 109
>cd02066 GRX_family Glutaredoxin (GRX) family; composed of GRX, approximately 10 kDa in size, and proteins containing a GRX or GRX-like domain. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins such as ribonucleotide reductase. It contains a redox active CXXC motif in a TRX fold and uses a similar dithiol mechanism employed by TRXs for intramolecular disulfide bond reduction of protein substrates. Unlike TRX, GRX has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. The flow of reducing equivalents in the GRX system goes from NADPH - GSH reductase - GSH - GRX - protein substrates. By altering the redox state of target proteins, GRX is involved in many cellular functions including DNA synthesis, signal transduction and the defense against oxidative stress. Different classes are known including human GRX1 and GRX2, as well as E. coli GRX1 and GRX3, which
Probab=98.82 E-value=3e-08 Score=62.52 Aligned_cols=69 Identities=17% Similarity=0.126 Sum_probs=59.9
Q ss_pred ceEEecccCChhhhHHHHHHHhhCCCeeEEEcCCCC-ChhHHHhhCCCCCcccEEEeCCeeeehhHHHHHH
Q 027524 3 EVKLHGGLLSPFNYRVVCALKLKGIPFELIKEDLSN-KSALLLKYNPVHKKIPVLVHGGKPVCESMVILEY 72 (222)
Q Consensus 3 ~~~L~~~~~s~~~~~v~~~l~~~gi~~~~~~v~~~~-~~~~~~~~~p~~g~vP~L~~~g~~l~es~aI~~y 72 (222)
++++|+.++||+|++++.+|+..|++|+.+.++... ...++...++. .++|++..+|..+.++..|.+.
T Consensus 1 ~v~ly~~~~Cp~C~~~~~~L~~~~i~~~~~di~~~~~~~~~l~~~~~~-~~~P~~~~~~~~igg~~~~~~~ 70 (72)
T cd02066 1 KVVVFSKSTCPYCKRAKRLLESLGIEFEEIDILEDGELREELKELSGW-PTVPQIFINGEFIGGYDDLKAL 70 (72)
T ss_pred CEEEEECCCCHHHHHHHHHHHHcCCcEEEEECCCCHHHHHHHHHHhCC-CCcCEEEECCEEEecHHHHHHh
Confidence 478999999999999999999999999988886553 45667778887 7999999999999999888764
No 110
>cd03418 GRX_GRXb_1_3_like Glutaredoxin (GRX) family, GRX bacterial class 1 and 3 (b_1_3)-like subfamily; composed of bacterial GRXs, approximately 10 kDa in size, and proteins containing a GRX or GRX-like domain. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins such as ribonucleotide reductase. It contains a redox active CXXC motif in a TRX fold and uses a similar dithiol mechanism employed by TRXs for intramolecular disulfide bond reduction of protein substrates. Unlike TRX, GRX has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. The flow of reducing equivalents in the GRX system goes from NADPH - GSH reductase - GSH - GRX - protein substrates. By altering the redox state of target proteins, GRX is involved in many cellular functions including DNA synthesis, signal transduction and the defense against oxidative stress. Different classes are known i
Probab=98.78 E-value=5.3e-08 Score=62.29 Aligned_cols=72 Identities=15% Similarity=0.199 Sum_probs=57.6
Q ss_pred ceEEecccCChhhhHHHHHHHhhCCCeeEEEcCCC-CChhHHHhhCCCCCcccEEEeCCeeeehhHHHHHHHH
Q 027524 3 EVKLHGGLLSPFNYRVVCALKLKGIPFELIKEDLS-NKSALLLKYNPVHKKIPVLVHGGKPVCESMVILEYIE 74 (222)
Q Consensus 3 ~~~L~~~~~s~~~~~v~~~l~~~gi~~~~~~v~~~-~~~~~~~~~~p~~g~vP~L~~~g~~l~es~aI~~yL~ 74 (222)
+++||+.+.||+|.+++-+|+..||+|+.+.++.. +...++.........+|++..+|..+.+...+.++-.
T Consensus 1 ~i~ly~~~~Cp~C~~ak~~L~~~~i~~~~i~i~~~~~~~~~~~~~~~~~~~vP~v~i~g~~igg~~~~~~~~~ 73 (75)
T cd03418 1 KVEIYTKPNCPYCVRAKALLDKKGVDYEEIDVDGDPALREEMINRSGGRRTVPQIFIGDVHIGGCDDLYALER 73 (75)
T ss_pred CEEEEeCCCChHHHHHHHHHHHCCCcEEEEECCCCHHHHHHHHHHhCCCCccCEEEECCEEEeChHHHHHHHh
Confidence 47899999999999999999999999999998754 2234444444431289999999999999988887643
No 111
>cd03211 GST_C_Metaxin2 GST_C family, Metaxin subfamily, Metaxin 2; a metaxin 1 binding protein identified through a yeast two-hybrid system using metaxin 1 as the bait. Metaxin 2 shares sequence similarity with metaxin 1 but does not contain a C-terminal mitochondrial outer membrane signal-anchor domain. It associates with mitochondrial membranes through its interaction with metaxin 1, which is a component of the mitochondrial preprotein import complex of the outer membrane. The biological function of metaxin 2 is unknown. It is likely that it also plays a role in protein translocation into the mitochondria. However, this has not been experimentally validated. In a recent proteomics study, it has been shown that metaxin 2 is overexpressed in response to lipopolysaccharide-induced liver injury.
Probab=98.78 E-value=7.4e-09 Score=73.30 Aligned_cols=72 Identities=15% Similarity=0.198 Sum_probs=55.9
Q ss_pred HHHHHHHHHHHHHHHHHhcccCCCCccccCCCChhHHHHHHHHHHHHHHHH-hhcccccCCCCCchHHHHHHHhc
Q 027524 116 DQENTMKEILEMLQIVEEHGLGEKKFFHGDKIGLVDIAFGSIVHWLQIIED-IVGVKLFESHKFPGLHAWLKNYK 189 (222)
Q Consensus 116 ~~~~~~~~~~~~l~~l~e~~L~~~~~l~G~~~s~AD~~l~~~l~~~~~~~~-~~~~~~~~~~~~p~l~~w~~~~~ 189 (222)
..++....+.+.|+.| +..|++++||+|++||.+|+++++++..+..... ....... .+++|+|.+|++||.
T Consensus 54 ~~ee~~~~~~~~l~aL-s~~Lg~~~~l~Gd~pT~~Da~vf~~la~~~~~~~~~~~l~~~-~~~~pnL~~y~~Ri~ 126 (126)
T cd03211 54 TLDQVIEEVDQCCQAL-SQRLGTQPYFFGDQPTELDALVFGHLFTILTTQLPNDELAEK-VKKYSNLLAFCRRIE 126 (126)
T ss_pred CHHHHHHHHHHHHHHH-HHHHCCCCCCCCCCCcHHHHHHHHHHHHHHhcCCCChHHHHH-HHhCcHHHHHHHhcC
Confidence 4567788889999999 9999999999999999999999999888753200 0011111 458999999999974
No 112
>cd03205 GST_C_6 GST_C family, unknown subfamily 6; composed of uncharacterized bacterial proteins with similarity to GSTs. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins, and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal thioredoxin-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. GSH binds to the N-terminal domain while the hydrophobic substrate occupies a pocket in the C-terminal domain.
Probab=98.73 E-value=5.1e-08 Score=65.84 Aligned_cols=67 Identities=22% Similarity=0.343 Sum_probs=53.5
Q ss_pred HHHHHHHHHHHHHHHHHHHhcccCCCCccccCCCChhHHHHHHHHHHHHHHHHhhcccccCCCCCchHHHHHHHh
Q 027524 114 IEDQENTMKEILEMLQIVEEHGLGEKKFFHGDKIGLVDIAFGSIVHWLQIIEDIVGVKLFESHKFPGLHAWLKNY 188 (222)
Q Consensus 114 ~~~~~~~~~~~~~~l~~l~e~~L~~~~~l~G~~~s~AD~~l~~~l~~~~~~~~~~~~~~~~~~~~p~l~~w~~~~ 188 (222)
.+..+.....+.+.++.+ |..|++++| +++|+||+++++.+.+..... .+... .+++|+|.+|+++|
T Consensus 32 ~~~~~~~~~~~~~~l~~l-e~~L~~~~~---d~~TlADi~l~~~l~~~~~~~--~~~~~--~~~~p~l~~w~~rm 98 (98)
T cd03205 32 QPWLERQRGKIERALDAL-EAELAKLPL---DPLDLADIAVACALGYLDFRH--PDLDW--RAAHPALAAWYARF 98 (98)
T ss_pred hHHHHHHHHHHHHHHHHH-HHhhhhCCC---CCCCHHHHHHHHHHHHHHhHc--cCcch--hhhChHHHHHHHhC
Confidence 445567789999999999 999998888 899999999999999885431 12222 35899999999986
No 113
>cd03197 GST_C_mPGES2 GST_C family; microsomal Prostaglandin E synthase Type 2 (mPGES2) subfamily; mPGES2 is a membrane-anchored dimeric protein containing a CXXC motif which catalyzes the isomerization of PGH2 to PGE2. Unlike cytosolic PGE synthase (cPGES) and microsomal PGES Type 1 (mPGES1), mPGES2 does not require glutathione (GSH) for its activity, although its catalytic rate is increased two- to four-fold in the presence of DTT, GSH, or other thiol compounds. PGE2 is widely distributed in various tissues and is implicated in the sleep/wake cycle, relaxation/contraction of smooth muscle, excretion of sodium ions, maintenance of body temperature, and mediation of inflammation. mPGES2 contains an N-terminal hydrophobic domain which is membrane associated and a C-terminal soluble domain with a GST-like structure. The C-terminus contains two structural domains a N-terminal thioredoxin-fold domain and a C-terminal alpha helical domain. The GST active site is located in a cleft between t
Probab=98.69 E-value=4.2e-08 Score=70.50 Aligned_cols=64 Identities=14% Similarity=0.193 Sum_probs=45.9
Q ss_pred HHHHHHHHHHHhcccCCCCccccCCCChhHHHHHHHHHHHHHHHHhhcccccCCCCCchHHHHHHHhcc
Q 027524 122 KEILEMLQIVEEHGLGEKKFFHGDKIGLVDIAFGSIVHWLQIIEDIVGVKLFESHKFPGLHAWLKNYKQ 190 (222)
Q Consensus 122 ~~~~~~l~~l~e~~L~~~~~l~G~~~s~AD~~l~~~l~~~~~~~~~~~~~~~~~~~~p~l~~w~~~~~~ 190 (222)
..+...++.+-+...++++|++|++||+||+++++.+..+..+. +.+ +..++|+|.+|++||++
T Consensus 82 ~~L~~a~~~w~~~~~~~~~FlaGd~ptIADisvyg~l~s~e~~~---~~~--Dl~~~p~I~~W~eRm~~ 145 (149)
T cd03197 82 EWLYDALNTWVAALGKDRQFHGGSKPNLADLAVYGVLRSVEGHP---AFK--DMVEETKIGEWYERMDA 145 (149)
T ss_pred HHHHHHHHHHHHHhcCCCCccCCCCCCHHHHHHHHHHHHHHHhc---ccc--chhhCcCHHHHHHHHHH
Confidence 33444444442333456789999999999999999998885442 221 34589999999999986
No 114
>TIGR02200 GlrX_actino Glutaredoxin-like protein. This family of glutaredoxin-like proteins is limited to the Actinobacteria and contains the conserved CxxC motif.
Probab=98.67 E-value=1.2e-07 Score=60.80 Aligned_cols=70 Identities=10% Similarity=0.191 Sum_probs=54.3
Q ss_pred ceEEecccCChhhhHHHHHHHhhCCCeeEEEcCCC-CChhHHHhhC-CCCCcccEEEe-CCeeeehhH--HHHHHH
Q 027524 3 EVKLHGGLLSPFNYRVVCALKLKGIPFELIKEDLS-NKSALLLKYN-PVHKKIPVLVH-GGKPVCESM--VILEYI 73 (222)
Q Consensus 3 ~~~L~~~~~s~~~~~v~~~l~~~gi~~~~~~v~~~-~~~~~~~~~~-p~~g~vP~L~~-~g~~l~es~--aI~~yL 73 (222)
+++||+.++||+|++++.+|+..|++|+.+.++-. .....+.+.| +. ..+|++.. +|..+.++. .|..+|
T Consensus 1 ~v~ly~~~~C~~C~~~~~~L~~~~~~~~~idi~~~~~~~~~~~~~~~~~-~~vP~i~~~~g~~l~~~~~~~~~~~l 75 (77)
T TIGR02200 1 TITVYGTTWCGYCAQLMRTLDKLGAAYEWVDIEEDEGAADRVVSVNNGN-MTVPTVKFADGSFLTNPSAAQVKAKL 75 (77)
T ss_pred CEEEEECCCChhHHHHHHHHHHcCCceEEEeCcCCHhHHHHHHHHhCCC-ceeCEEEECCCeEecCCCHHHHHHHh
Confidence 47999999999999999999999999998888654 3345566776 76 79999974 777776553 344444
No 115
>cd03212 GST_C_Metaxin1_3 GST_C family, Metaxin subfamily, Metaxin 1-like proteins; composed of metaxins 1 and 3, and similar proteins. Mammalian metaxin (or metaxin 1) is a component of the preprotein import complex of the mitochondrial outer membrane. Metaxin extends to the cytosol and is anchored to the mitochondrial membrane through its C-terminal domain. In mice, metaxin is required for embryonic development. Like the murine gene, the human metaxin gene is located downstream to the glucocerebrosidase (GBA) pseudogene and is convergently transcribed. Inherited deficiency of GBA results in Gaucher disease, which presents many diverse clinical phenotypes. Alterations in the metaxin gene, in addition to GBA mutations, may be associated with Gaucher disease. Genome sequencing shows that a third metaxin gene also exists in zebrafish, Xenopus, chicken, and mammals.
Probab=98.65 E-value=6.3e-08 Score=69.51 Aligned_cols=74 Identities=19% Similarity=0.216 Sum_probs=56.8
Q ss_pred HHHHHHHHHHHHHHHHHHhcccCCCCccccCCCChhHHHHHHHHHHHHHH-HHhhcccccCCCCCchHHHHHHHhcc
Q 027524 115 EDQENTMKEILEMLQIVEEHGLGEKKFFHGDKIGLVDIAFGSIVHWLQII-EDIVGVKLFESHKFPGLHAWLKNYKQ 190 (222)
Q Consensus 115 ~~~~~~~~~~~~~l~~l~e~~L~~~~~l~G~~~s~AD~~l~~~l~~~~~~-~~~~~~~~~~~~~~p~l~~w~~~~~~ 190 (222)
...++....+.+.++.| ++.|++++|++|+++|.+|+++++++..+... .+....... ..++|+|.+|++|+.+
T Consensus 60 ~~~~~~~~~a~~~l~~l-~~~L~~~~~~~Gd~~t~~D~~~~~~l~~~~~~~~~~~~l~~~-~~~~pnL~~~~~ri~~ 134 (137)
T cd03212 60 EVEAEIYRDAKECLNLL-SQRLGESQFFFGDTPTSLDALVFGYLAPLLKAPLPNNKLQNH-LKQCPNLCRFCDRILS 134 (137)
T ss_pred hhHHHHHHHHHHHHHHH-HHHHCCCCcCCCCCCcHHHHHHHHHHHHHHhccCCChHHHHH-HHHCcHHHHHHHHHHH
Confidence 35667788889999999 99999999999999999999999988777421 000000011 4589999999999975
No 116
>TIGR02181 GRX_bact Glutaredoxin, GrxC family. This family of glutaredoxins includes the E. coli protein GrxC (Grx3) which appears to have a secondary role in reducing ribonucleotide reductase (in the absence of GrxA) possibly indicating a role in the reduction of other protein disulfides.
Probab=98.64 E-value=1.9e-07 Score=60.37 Aligned_cols=71 Identities=18% Similarity=0.223 Sum_probs=59.2
Q ss_pred eEEecccCChhhhHHHHHHHhhCCCeeEEEcCCC-CChhHHHhhCCCCCcccEEEeCCeeeehhHHHHHHHHh
Q 027524 4 VKLHGGLLSPFNYRVVCALKLKGIPFELIKEDLS-NKSALLLKYNPVHKKIPVLVHGGKPVCESMVILEYIEE 75 (222)
Q Consensus 4 ~~L~~~~~s~~~~~v~~~l~~~gi~~~~~~v~~~-~~~~~~~~~~p~~g~vP~L~~~g~~l~es~aI~~yL~~ 75 (222)
+++|+.+.||+|.+++-+|+..|++|+.+.++.. ...+++.+.... ..+|++..+|..+.+...+.++-.+
T Consensus 1 v~ly~~~~Cp~C~~a~~~L~~~~i~~~~~di~~~~~~~~~~~~~~g~-~~vP~i~i~g~~igg~~~~~~~~~~ 72 (79)
T TIGR02181 1 VTIYTKPYCPYCTRAKALLSSKGVTFTEIRVDGDPALRDEMMQRSGR-RTVPQIFIGDVHVGGCDDLYALDRE 72 (79)
T ss_pred CEEEecCCChhHHHHHHHHHHcCCCcEEEEecCCHHHHHHHHHHhCC-CCcCEEEECCEEEcChHHHHHHHHc
Confidence 5799999999999999999999999999999765 334556666665 6899999999999988888776544
No 117
>COG0695 GrxC Glutaredoxin and related proteins [Posttranslational modification, protein turnover, chaperones]
Probab=98.58 E-value=4.3e-07 Score=58.85 Aligned_cols=70 Identities=21% Similarity=0.246 Sum_probs=55.9
Q ss_pred ceEEecccCChhhhHHHHHHHhhCCCeeEEEcCCCC--ChhHHHhh-CCCCCcccEEEeCCeeeehhHHHHHHH
Q 027524 3 EVKLHGGLLSPFNYRVVCALKLKGIPFELIKEDLSN--KSALLLKY-NPVHKKIPVLVHGGKPVCESMVILEYI 73 (222)
Q Consensus 3 ~~~L~~~~~s~~~~~v~~~l~~~gi~~~~~~v~~~~--~~~~~~~~-~p~~g~vP~L~~~g~~l~es~aI~~yL 73 (222)
++++|+.++||||.++.-+|..+|++|+.+.++... ...++... ++. .+||++..||..+.....+-++.
T Consensus 2 ~v~iyt~~~CPyC~~ak~~L~~~g~~~~~i~~~~~~~~~~~~~~~~~~g~-~tvP~I~i~~~~igg~~d~~~~~ 74 (80)
T COG0695 2 NVTIYTKPGCPYCKRAKRLLDRKGVDYEEIDVDDDEPEEAREMVKRGKGQ-RTVPQIFIGGKHVGGCDDLDALE 74 (80)
T ss_pred CEEEEECCCCchHHHHHHHHHHcCCCcEEEEecCCcHHHHHHHHHHhCCC-CCcCEEEECCEEEeCcccHHHHH
Confidence 489999999999999999999999999999987764 44444444 466 79999999998887655554443
No 118
>PRK11200 grxA glutaredoxin 1; Provisional
Probab=98.58 E-value=5.4e-07 Score=59.15 Aligned_cols=77 Identities=14% Similarity=0.122 Sum_probs=60.8
Q ss_pred cceEEecccCChhhhHHHHHHHh-----hCCCeeEEEcCCCC-ChhHHHhhCCC-CCcccEEEeCCeeeehhHHHHHHHH
Q 027524 2 AEVKLHGGLLSPFNYRVVCALKL-----KGIPFELIKEDLSN-KSALLLKYNPV-HKKIPVLVHGGKPVCESMVILEYIE 74 (222)
Q Consensus 2 ~~~~L~~~~~s~~~~~v~~~l~~-----~gi~~~~~~v~~~~-~~~~~~~~~p~-~g~vP~L~~~g~~l~es~aI~~yL~ 74 (222)
..+++|+.++||+|.+++-+|+. .|++|+.+.++-+. ..+++...... ...+|++..||..+.+...|.+++.
T Consensus 1 m~v~iy~~~~C~~C~~a~~~L~~l~~~~~~i~~~~idi~~~~~~~~el~~~~~~~~~~vP~ifi~g~~igg~~~~~~~~~ 80 (85)
T PRK11200 1 MFVVIFGRPGCPYCVRAKELAEKLSEERDDFDYRYVDIHAEGISKADLEKTVGKPVETVPQIFVDQKHIGGCTDFEAYVK 80 (85)
T ss_pred CEEEEEeCCCChhHHHHHHHHHhhcccccCCcEEEEECCCChHHHHHHHHHHCCCCCcCCEEEECCEEEcCHHHHHHHHH
Confidence 03899999999999999999999 89999999887542 12344433221 1379999999999999999999998
Q ss_pred hhCC
Q 027524 75 ETWP 78 (222)
Q Consensus 75 ~~~~ 78 (222)
+.++
T Consensus 81 ~~~~ 84 (85)
T PRK11200 81 ENLG 84 (85)
T ss_pred Hhcc
Confidence 8654
No 119
>TIGR02194 GlrX_NrdH Glutaredoxin-like protein NrdH. NrdH-redoxin is a representative of a class of small redox proteins that contain a conserved CXXC motif and are characterized by a glutaredoxin-like amino acid sequence and thioredoxin-like activity profile. Unlike other the glutaredoxins to which it is most closely related, NrdH aparrently does not interact with glutathione/glutathione reductase, but rather with thioredoxin reductase to catalyze the reduction of ribonucleotide reductase.
Probab=98.58 E-value=2.5e-07 Score=58.79 Aligned_cols=57 Identities=23% Similarity=0.233 Sum_probs=45.8
Q ss_pred eEEecccCChhhhHHHHHHHhhCCCeeEEEcCCCCChhHHHhhCCCCCcccEEEeCCe
Q 027524 4 VKLHGGLLSPFNYRVVCALKLKGIPFELIKEDLSNKSALLLKYNPVHKKIPVLVHGGK 61 (222)
Q Consensus 4 ~~L~~~~~s~~~~~v~~~l~~~gi~~~~~~v~~~~~~~~~~~~~p~~g~vP~L~~~g~ 61 (222)
++||+.+.||+|++++-+|+..||+|+.+.++-+....+.+...+. ..||++..+|.
T Consensus 1 v~ly~~~~Cp~C~~ak~~L~~~~i~~~~~di~~~~~~~~~~~~~g~-~~vP~v~~~g~ 57 (72)
T TIGR02194 1 ITVYSKNNCVQCKMTKKALEEHGIAFEEINIDEQPEAIDYVKAQGF-RQVPVIVADGD 57 (72)
T ss_pred CEEEeCCCCHHHHHHHHHHHHCCCceEEEECCCCHHHHHHHHHcCC-cccCEEEECCC
Confidence 5899999999999999999999999999999765433333444455 58999998664
No 120
>PF00462 Glutaredoxin: Glutaredoxin; InterPro: IPR002109 Glutaredoxins [, , ], also known as thioltransferases (disulphide reductases, are small proteins of approximately one hundred amino-acid residues which utilise glutathione and NADPH as cofactors. Oxidized glutathione is regenerated by glutathione reductase. Together these components compose the glutathione system []. Glutaredoxin functions as an electron carrier in the glutathione-dependent synthesis of deoxyribonucleotides by the enzyme ribonucleotide reductase. Like thioredoxin, which functions in a similar way, glutaredoxin possesses an active centre disulphide bond []. It exists in either a reduced or an oxidized form where the two cysteine residues are linked in an intramolecular disulphide bond. Glutaredoxin has been sequenced in a variety of species. On the basis of extensive sequence similarity, it has been proposed [] that Vaccinia virus protein O2L is most probably a glutaredoxin. Finally, it must be noted that Bacteriophage T4 thioredoxin seems also to be evolutionary related. In position 5 of the pattern T4 thioredoxin has Val instead of Pro. This entry represents Glutaredoxin.; GO: 0009055 electron carrier activity, 0015035 protein disulfide oxidoreductase activity, 0045454 cell redox homeostasis; PDB: 1QFN_A 1GRX_A 1EGO_A 1EGR_A 3RHC_A 3RHB_A 3IPZ_A 1NHO_A 3GX8_A 3D5J_A ....
Probab=98.55 E-value=2e-07 Score=56.98 Aligned_cols=59 Identities=24% Similarity=0.309 Sum_probs=50.4
Q ss_pred eEEecccCChhhhHHHHHHHhhCCCeeEEEcCCC-CChhHHHhhCCCCCcccEEEeCCeee
Q 027524 4 VKLHGGLLSPFNYRVVCALKLKGIPFELIKEDLS-NKSALLLKYNPVHKKIPVLVHGGKPV 63 (222)
Q Consensus 4 ~~L~~~~~s~~~~~v~~~l~~~gi~~~~~~v~~~-~~~~~~~~~~p~~g~vP~L~~~g~~l 63 (222)
+++|+.++||+|.+++-+|+..|++|+.+.++.. ...+++.+.... .++|++..||..|
T Consensus 1 V~vy~~~~C~~C~~~~~~L~~~~i~y~~~dv~~~~~~~~~l~~~~g~-~~~P~v~i~g~~I 60 (60)
T PF00462_consen 1 VVVYTKPGCPYCKKAKEFLDEKGIPYEEVDVDEDEEAREELKELSGV-RTVPQVFIDGKFI 60 (60)
T ss_dssp EEEEESTTSHHHHHHHHHHHHTTBEEEEEEGGGSHHHHHHHHHHHSS-SSSSEEEETTEEE
T ss_pred cEEEEcCCCcCHHHHHHHHHHcCCeeeEcccccchhHHHHHHHHcCC-CccCEEEECCEEC
Confidence 5799999999999999999999999999999876 455666666554 6899999998765
No 121
>cd03419 GRX_GRXh_1_2_like Glutaredoxin (GRX) family, GRX human class 1 and 2 (h_1_2)-like subfamily; composed of proteins similar to human GRXs, approximately 10 kDa in size, and proteins containing a GRX or GRX-like domain. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins such as ribonucleotide reductase. It contains a redox active CXXC motif in a TRX fold and uses a similar dithiol mechanism employed by TRXs for intramolecular disulfide bond reduction of protein substrates. Unlike TRX, GRX has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. The flow of reducing equivalents in the GRX system goes from NADPH - GSH reductase - GSH - GRX - protein substrates. By altering the redox state of target proteins, GRX is involved in many cellular functions including DNA synthesis, signal transduction and the defense against oxidative stress. Different classes
Probab=98.45 E-value=2e-06 Score=55.85 Aligned_cols=72 Identities=17% Similarity=0.234 Sum_probs=60.0
Q ss_pred ceEEecccCChhhhHHHHHHHhhCCCeeEEEcCCCCCh----hHHHhhCCCCCcccEEEeCCeeeehhHHHHHHHHh
Q 027524 3 EVKLHGGLLSPFNYRVVCALKLKGIPFELIKEDLSNKS----ALLLKYNPVHKKIPVLVHGGKPVCESMVILEYIEE 75 (222)
Q Consensus 3 ~~~L~~~~~s~~~~~v~~~l~~~gi~~~~~~v~~~~~~----~~~~~~~p~~g~vP~L~~~g~~l~es~aI~~yL~~ 75 (222)
++++|+.++||+|.+++-+|...+++|+...++..+.. ..+.+.+.. ..+|++..+|..+.++..|.++..+
T Consensus 1 ~v~~y~~~~Cp~C~~~~~~l~~~~~~~~~~~v~~~~~~~~~~~~~~~~~g~-~~~P~v~~~g~~igg~~~~~~~~~~ 76 (82)
T cd03419 1 PVVVFSKSYCPYCKRAKSLLKELGVKPAVVELDQHEDGSEIQDYLQELTGQ-RTVPNVFIGGKFIGGCDDLMALHKS 76 (82)
T ss_pred CEEEEEcCCCHHHHHHHHHHHHcCCCcEEEEEeCCCChHHHHHHHHHHhCC-CCCCeEEECCEEEcCHHHHHHHHHc
Confidence 47899999999999999999999999999998876432 234455555 6899999999999999999887654
No 122
>TIGR02189 GlrX-like_plant Glutaredoxin-like family. This family of glutaredoxin-like proteins is aparrently limited to plants. Multiple isoforms are found in A. thaliana and O.sativa.
Probab=98.43 E-value=2.5e-06 Score=57.66 Aligned_cols=69 Identities=16% Similarity=0.086 Sum_probs=56.8
Q ss_pred ceEEecccCChhhhHHHHHHHhhCCCeeEEEcCCCCChh----HHHhhCCCCCcccEEEeCCeeeehhHHHHHH
Q 027524 3 EVKLHGGLLSPFNYRVVCALKLKGIPFELIKEDLSNKSA----LLLKYNPVHKKIPVLVHGGKPVCESMVILEY 72 (222)
Q Consensus 3 ~~~L~~~~~s~~~~~v~~~l~~~gi~~~~~~v~~~~~~~----~~~~~~p~~g~vP~L~~~g~~l~es~aI~~y 72 (222)
++++|+-++||||.++.-+|...|++|+.+.++..+... .+...+.. .++|.+..+|..|.+...+...
T Consensus 9 ~Vvvysk~~Cp~C~~ak~~L~~~~i~~~~vdid~~~~~~~~~~~l~~~tg~-~tvP~Vfi~g~~iGG~ddl~~l 81 (99)
T TIGR02189 9 AVVIFSRSSCCMCHVVKRLLLTLGVNPAVHEIDKEPAGKDIENALSRLGCS-PAVPAVFVGGKLVGGLENVMAL 81 (99)
T ss_pred CEEEEECCCCHHHHHHHHHHHHcCCCCEEEEcCCCccHHHHHHHHHHhcCC-CCcCeEEECCEEEcCHHHHHHH
Confidence 689999999999999999999999999999998653322 23444555 6899999999999888877764
No 123
>TIGR02183 GRXA Glutaredoxin, GrxA family. This model includes the E. coli glyutaredoxin GrxA which appears to have primary responsibility for the reduction of ribonucleotide reductase.
Probab=98.40 E-value=3e-06 Score=55.71 Aligned_cols=75 Identities=17% Similarity=0.150 Sum_probs=57.6
Q ss_pred eEEecccCChhhhHHHHHHHhhC-----CCeeEEEcCCCC-ChhHHHhhCCC-CCcccEEEeCCeeeehhHHHHHHHHhh
Q 027524 4 VKLHGGLLSPFNYRVVCALKLKG-----IPFELIKEDLSN-KSALLLKYNPV-HKKIPVLVHGGKPVCESMVILEYIEET 76 (222)
Q Consensus 4 ~~L~~~~~s~~~~~v~~~l~~~g-----i~~~~~~v~~~~-~~~~~~~~~p~-~g~vP~L~~~g~~l~es~aI~~yL~~~ 76 (222)
+++|+.++||||.+++-+|+..+ ++|+.+.++... ...++....-. ...||++..||..+.++..|.+++.+.
T Consensus 2 V~vys~~~Cp~C~~ak~~L~~~~~~~~~i~~~~idi~~~~~~~~~l~~~~g~~~~tVP~ifi~g~~igG~~dl~~~~~~~ 81 (86)
T TIGR02183 2 VVIFGRPGCPYCVRAKQLAEKLAIERADFEFRYIDIHAEGISKADLEKTVGKPVETVPQIFVDEKHVGGCTDFEQLVKEN 81 (86)
T ss_pred EEEEeCCCCccHHHHHHHHHHhCcccCCCcEEEEECCCCHHHHHHHHHHhCCCCCCcCeEEECCEEecCHHHHHHHHHhc
Confidence 68999999999999999999985 567777776432 13334433321 138999999999999999999998886
Q ss_pred CC
Q 027524 77 WP 78 (222)
Q Consensus 77 ~~ 78 (222)
+.
T Consensus 82 ~~ 83 (86)
T TIGR02183 82 FD 83 (86)
T ss_pred cc
Confidence 54
No 124
>PHA03050 glutaredoxin; Provisional
Probab=98.35 E-value=4.7e-06 Score=57.19 Aligned_cols=68 Identities=13% Similarity=0.198 Sum_probs=56.8
Q ss_pred ceEEecccCChhhhHHHHHHHhhCC---CeeEEEcCCCC----ChhHHHhhCCCCCcccEEEeCCeeeehhHHHHH
Q 027524 3 EVKLHGGLLSPFNYRVVCALKLKGI---PFELIKEDLSN----KSALLLKYNPVHKKIPVLVHGGKPVCESMVILE 71 (222)
Q Consensus 3 ~~~L~~~~~s~~~~~v~~~l~~~gi---~~~~~~v~~~~----~~~~~~~~~p~~g~vP~L~~~g~~l~es~aI~~ 71 (222)
++++|+.++||||.+++-+|...|+ +|+.+.++-.. -..++.+.+.. .+||.+..+|..|.....+..
T Consensus 14 ~V~vys~~~CPyC~~ak~~L~~~~i~~~~~~~i~i~~~~~~~~~~~~l~~~tG~-~tVP~IfI~g~~iGG~ddl~~ 88 (108)
T PHA03050 14 KVTIFVKFTCPFCRNALDILNKFSFKRGAYEIVDIKEFKPENELRDYFEQITGG-RTVPRIFFGKTSIGGYSDLLE 88 (108)
T ss_pred CEEEEECCCChHHHHHHHHHHHcCCCcCCcEEEECCCCCCCHHHHHHHHHHcCC-CCcCEEEECCEEEeChHHHHH
Confidence 6899999999999999999999999 78888887532 23556666665 689999999999988877766
No 125
>TIGR00365 monothiol glutaredoxin, Grx4 family. The gene for the member of this glutaredoxin family in E. coli, originally designated ydhD, is now designated grxD. Its protein, Grx4, is a monothiol glutaredoxin similar to Grx5 of yeast, which is involved in iron-sulfur cluster formation.
Probab=98.21 E-value=1.1e-05 Score=54.20 Aligned_cols=70 Identities=26% Similarity=0.248 Sum_probs=54.5
Q ss_pred ceEEecc-----cCChhhhHHHHHHHhhCCCeeEEEcCCC-CChhHHHhhCCCCCcccEEEeCCeeeehhHHHHHHH
Q 027524 3 EVKLHGG-----LLSPFNYRVVCALKLKGIPFELIKEDLS-NKSALLLKYNPVHKKIPVLVHGGKPVCESMVILEYI 73 (222)
Q Consensus 3 ~~~L~~~-----~~s~~~~~v~~~l~~~gi~~~~~~v~~~-~~~~~~~~~~p~~g~vP~L~~~g~~l~es~aI~~yL 73 (222)
++.+|.- ++||||.+++-+|...||+|+.+.++-. ....++...+.. .++|.+..+|..|.+...+.+..
T Consensus 13 ~Vvvf~kg~~~~~~Cp~C~~ak~lL~~~~i~~~~~di~~~~~~~~~l~~~tg~-~tvP~vfi~g~~iGG~ddl~~l~ 88 (97)
T TIGR00365 13 PVVLYMKGTPQFPQCGFSARAVQILKACGVPFAYVNVLEDPEIRQGIKEYSNW-PTIPQLYVKGEFVGGCDIIMEMY 88 (97)
T ss_pred CEEEEEccCCCCCCCchHHHHHHHHHHcCCCEEEEECCCCHHHHHHHHHHhCC-CCCCEEEECCEEEeChHHHHHHH
Confidence 5677743 7899999999999999999999888533 223344455655 68999999999998888777643
No 126
>TIGR02180 GRX_euk Glutaredoxin. This model represents eukaryotic glutaredoxins and includes sequences from fungi, plants and metazoans as well as viruses.
Probab=98.20 E-value=1.5e-05 Score=51.79 Aligned_cols=71 Identities=14% Similarity=0.220 Sum_probs=57.2
Q ss_pred eEEecccCChhhhHHHHHHHhhCCC--eeEEEcCCCCChh----HHHhhCCCCCcccEEEeCCeeeehhHHHHHHHHh
Q 027524 4 VKLHGGLLSPFNYRVVCALKLKGIP--FELIKEDLSNKSA----LLLKYNPVHKKIPVLVHGGKPVCESMVILEYIEE 75 (222)
Q Consensus 4 ~~L~~~~~s~~~~~v~~~l~~~gi~--~~~~~v~~~~~~~----~~~~~~p~~g~vP~L~~~g~~l~es~aI~~yL~~ 75 (222)
+++|+-++||+|.+++-+|+..+++ |+.+.++...... .+...... ..+|.+..+|..+.++..+.++..+
T Consensus 1 V~~f~~~~Cp~C~~~~~~L~~~~i~~~~~~~~v~~~~~~~~~~~~l~~~~g~-~~vP~v~i~g~~igg~~~~~~~~~~ 77 (84)
T TIGR02180 1 VVVFSKSYCPYCKKAKEILAKLNVKPAYEVVELDQLSNGSEIQDYLEEITGQ-RTVPNIFINGKFIGGCSDLLALYKS 77 (84)
T ss_pred CEEEECCCChhHHHHHHHHHHcCCCCCCEEEEeeCCCChHHHHHHHHHHhCC-CCCCeEEECCEEEcCHHHHHHHHHc
Confidence 4789999999999999999999999 8888887653332 24444554 5899999999999999888887654
No 127
>cd03028 GRX_PICOT_like Glutaredoxin (GRX) family, PKC-interacting cousin of TRX (PICOT)-like subfamily; composed of PICOT and GRX-PICOT-like proteins. The non-PICOT members of this family contain only the GRX-like domain, whereas PICOT contains an N-terminal TRX-like domain followed by one to three GRX-like domains. It is interesting to note that PICOT from plants contain three repeats of the GRX-like domain, metazoan proteins (except for insect) have two repeats, while fungal sequences contain only one copy of the domain. PICOT is a protein that interacts with protein kinase C (PKC) theta, a calcium independent PKC isoform selectively expressed in skeletal muscle and T lymphocytes. PICOT inhibits the activation of c-Jun N-terminal kinase and the transcription factors, AP-1 and NF-kB, induced by PKC theta or T-cell activating stimuli. Both GRX and TRX domains of PICOT are required for its activity. Characterized non-PICOT members of this family include CXIP1, a CAX-interacting protein
Probab=98.17 E-value=1.6e-05 Score=52.69 Aligned_cols=70 Identities=21% Similarity=0.161 Sum_probs=55.5
Q ss_pred ceEEecc-----cCChhhhHHHHHHHhhCCCeeEEEcCCC-CChhHHHhhCCCCCcccEEEeCCeeeehhHHHHHHH
Q 027524 3 EVKLHGG-----LLSPFNYRVVCALKLKGIPFELIKEDLS-NKSALLLKYNPVHKKIPVLVHGGKPVCESMVILEYI 73 (222)
Q Consensus 3 ~~~L~~~-----~~s~~~~~v~~~l~~~gi~~~~~~v~~~-~~~~~~~~~~p~~g~vP~L~~~g~~l~es~aI~~yL 73 (222)
++.+|.- ++||||.+++-+|...|++|+.+.++.+ ....++.+.+.. .++|.+..+|..|.+...+.+..
T Consensus 9 ~vvvf~k~~~~~~~Cp~C~~ak~~L~~~~i~y~~idv~~~~~~~~~l~~~~g~-~tvP~vfi~g~~iGG~~~l~~l~ 84 (90)
T cd03028 9 PVVLFMKGTPEEPRCGFSRKVVQILNQLGVDFGTFDILEDEEVRQGLKEYSNW-PTFPQLYVNGELVGGCDIVKEMH 84 (90)
T ss_pred CEEEEEcCCCCCCCCcHHHHHHHHHHHcCCCeEEEEcCCCHHHHHHHHHHhCC-CCCCEEEECCEEEeCHHHHHHHH
Confidence 4677754 6999999999999999999999998654 223444555555 68999999999999988887754
No 128
>PF10568 Tom37: Outer mitochondrial membrane transport complex protein; InterPro: IPR019564 Tom37 is one of the outer membrane proteins that make up the TOM complex for guiding cytosolic mitochondrial beta-barrel proteins from the cytosol across the outer mitochondrial membrane into the intramembrane space. In conjunction with Tom70, it guides peptides without an mitochondrial targeting sequence (MTS) into Tom40, the protein that forms the passage through the outer membrane []. It has homology with metaxin, also part of the outer mitochondrial membrane beta-barrel protein transport complex []. This entry represents outer mitochondrial membrane transport complex proteins Tom37 and metaxin.; GO: 0006626 protein targeting to mitochondrion, 0005741 mitochondrial outer membrane
Probab=98.11 E-value=1.8e-05 Score=49.99 Aligned_cols=55 Identities=29% Similarity=0.553 Sum_probs=48.3
Q ss_pred CChhhhHHHHHHHhhCCC---eeEEEcCCCCChhHHHhhCCCCCcccEEEe-CCeeeehhHHHHHHH
Q 027524 11 LSPFNYRVVCALKLKGIP---FELIKEDLSNKSALLLKYNPVHKKIPVLVH-GGKPVCESMVILEYI 73 (222)
Q Consensus 11 ~s~~~~~v~~~l~~~gi~---~~~~~v~~~~~~~~~~~~~p~~g~vP~L~~-~g~~l~es~aI~~yL 73 (222)
.+|-|.++.++|..++.| ++++..+-.. ++|. |++|+|.+ ++..+.+-..|++||
T Consensus 13 id~ecLa~~~yl~~~~~~~~~~~vv~s~n~~-------~Spt-g~LP~L~~~~~~~vsg~~~Iv~yL 71 (72)
T PF10568_consen 13 IDPECLAVIAYLKFAGAPEQQFKVVPSNNPW-------LSPT-GELPALIDSGGTWVSGFRNIVEYL 71 (72)
T ss_pred cCHHHHHHHHHHHhCCCCCceEEEEEcCCCC-------cCCC-CCCCEEEECCCcEEECHHHHHHhh
Confidence 589999999999999999 8888775322 5687 89999999 999999999999998
No 129
>PRK12759 bifunctional gluaredoxin/ribonucleoside-diphosphate reductase subunit beta; Provisional
Probab=97.89 E-value=6.5e-05 Score=63.71 Aligned_cols=70 Identities=20% Similarity=0.249 Sum_probs=55.5
Q ss_pred CcceEEecccCChhhhHHHHHHHhhCCCeeEEEcCCCCChhHHH-hh--------CCCCCcccEEEeCCeeeehhHHHHH
Q 027524 1 MAEVKLHGGLLSPFNYRVVCALKLKGIPFELIKEDLSNKSALLL-KY--------NPVHKKIPVLVHGGKPVCESMVILE 71 (222)
Q Consensus 1 M~~~~L~~~~~s~~~~~v~~~l~~~gi~~~~~~v~~~~~~~~~~-~~--------~p~~g~vP~L~~~g~~l~es~aI~~ 71 (222)
|.++++|+.++||+|.++.-+|...||||+.+.++-+....++. .. ... ..||++..+|..|.+-..+..
T Consensus 1 m~~V~vys~~~Cp~C~~aK~~L~~~gi~~~~idi~~~~~~~~~~~~~~~~~~~~~~g~-~tvP~ifi~~~~igGf~~l~~ 79 (410)
T PRK12759 1 MVEVRIYTKTNCPFCDLAKSWFGANDIPFTQISLDDDVKRAEFYAEVNKNILLVEEHI-RTVPQIFVGDVHIGGYDNLMA 79 (410)
T ss_pred CCcEEEEeCCCCHHHHHHHHHHHHCCCCeEEEECCCChhHHHHHHHHhhccccccCCC-CccCeEEECCEEEeCchHHHH
Confidence 77899999999999999999999999999999997443222322 21 233 589999999998888777655
No 130
>cd03031 GRX_GRX_like Glutaredoxin (GRX) family, GRX-like domain containing protein subfamily; composed of uncharacterized eukaryotic proteins containing a GRX-like domain having only one conserved cysteine, aligning to the C-terminal cysteine of the CXXC motif of GRXs. This subfamily is predominantly composed of plant proteins. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins via a redox active CXXC motif using a similar dithiol mechanism employed by TRXs. GRX has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. Proteins containing only the C-terminal cysteine are generally redox inactive.
Probab=97.70 E-value=0.00031 Score=50.84 Aligned_cols=69 Identities=13% Similarity=0.027 Sum_probs=55.6
Q ss_pred eEEeccc------CChhhhHHHHHHHhhCCCeeEEEcCCC-CChhHHHhhCCC---CCcccEEEeCCeeeehhHHHHHH
Q 027524 4 VKLHGGL------LSPFNYRVVCALKLKGIPFELIKEDLS-NKSALLLKYNPV---HKKIPVLVHGGKPVCESMVILEY 72 (222)
Q Consensus 4 ~~L~~~~------~s~~~~~v~~~l~~~gi~~~~~~v~~~-~~~~~~~~~~p~---~g~vP~L~~~g~~l~es~aI~~y 72 (222)
++||..+ .+|+|.+++-+|+.+||+|+.+.++.. ...+++.+.... ...+|.+..+|..|.....+.+.
T Consensus 2 VvlYttsl~giR~t~~~C~~ak~iL~~~~V~~~e~DVs~~~~~~~EL~~~~g~~~~~~tvPqVFI~G~~IGG~del~~L 80 (147)
T cd03031 2 VVLYTTSLRGVRKTFEDCNNVRAILESFRVKFDERDVSMDSGFREELRELLGAELKAVSLPRVFVDGRYLGGAEEVLRL 80 (147)
T ss_pred EEEEEcCCcCCCCcChhHHHHHHHHHHCCCcEEEEECCCCHHHHHHHHHHhCCCCCCCCCCEEEECCEEEecHHHHHHH
Confidence 6899998 899999999999999999999998765 334555554221 15899999999999988887774
No 131
>PRK10824 glutaredoxin-4; Provisional
Probab=97.68 E-value=0.00032 Score=48.52 Aligned_cols=70 Identities=23% Similarity=0.184 Sum_probs=54.4
Q ss_pred ceEEecc-----cCChhhhHHHHHHHhhCCCeeEEEcCCC-CChhHHHhhCCCCCcccEEEeCCeeeehhHHHHHHH
Q 027524 3 EVKLHGG-----LLSPFNYRVVCALKLKGIPFELIKEDLS-NKSALLLKYNPVHKKIPVLVHGGKPVCESMVILEYI 73 (222)
Q Consensus 3 ~~~L~~~-----~~s~~~~~v~~~l~~~gi~~~~~~v~~~-~~~~~~~~~~p~~g~vP~L~~~g~~l~es~aI~~yL 73 (222)
++.+|.- ++||||.++.-+|...|++|..+.++-+ .-...+...+-. .+||-+..+|..|.++..+....
T Consensus 16 ~Vvvf~Kg~~~~p~Cpyc~~ak~lL~~~~i~~~~idi~~d~~~~~~l~~~sg~-~TVPQIFI~G~~IGG~ddl~~l~ 91 (115)
T PRK10824 16 PILLYMKGSPKLPSCGFSAQAVQALSACGERFAYVDILQNPDIRAELPKYANW-PTFPQLWVDGELVGGCDIVIEMY 91 (115)
T ss_pred CEEEEECCCCCCCCCchHHHHHHHHHHcCCCceEEEecCCHHHHHHHHHHhCC-CCCCeEEECCEEEcChHHHHHHH
Confidence 4566644 5899999999999999999999887644 223445555554 69999999999999988777743
No 132
>KOG1752 consensus Glutaredoxin and related proteins [Posttranslational modification, protein turnover, chaperones]
Probab=97.39 E-value=0.0014 Score=44.50 Aligned_cols=71 Identities=15% Similarity=0.205 Sum_probs=57.7
Q ss_pred ceEEecccCChhhhHHHHHHHhhCCCeeEEEcCCCCChhHH----HhhCCCCCcccEEEeCCeeeehhHHHHHHHH
Q 027524 3 EVKLHGGLLSPFNYRVVCALKLKGIPFELIKEDLSNKSALL----LKYNPVHKKIPVLVHGGKPVCESMVILEYIE 74 (222)
Q Consensus 3 ~~~L~~~~~s~~~~~v~~~l~~~gi~~~~~~v~~~~~~~~~----~~~~p~~g~vP~L~~~g~~l~es~aI~~yL~ 74 (222)
++.+|.=++||||+++.-+|...|+++.++++|-.+...++ .++.-. .+||.+..+|..|.....+.++-.
T Consensus 15 ~VVifSKs~C~~c~~~k~ll~~~~v~~~vvELD~~~~g~eiq~~l~~~tg~-~tvP~vFI~Gk~iGG~~dl~~lh~ 89 (104)
T KOG1752|consen 15 PVVIFSKSSCPYCHRAKELLSDLGVNPKVVELDEDEDGSEIQKALKKLTGQ-RTVPNVFIGGKFIGGASDLMALHK 89 (104)
T ss_pred CEEEEECCcCchHHHHHHHHHhCCCCCEEEEccCCCCcHHHHHHHHHhcCC-CCCCEEEECCEEEcCHHHHHHHHH
Confidence 57788889999999999999999999999999877444343 233433 589999999999999988887643
No 133
>cd02973 TRX_GRX_like Thioredoxin (TRX)-Glutaredoxin (GRX)-like family; composed of archaeal and bacterial proteins that show similarity to both TRX and GRX, including the C-terminal TRX-fold subdomain of Pyrococcus furiosus protein disulfide oxidoreductase (PfPDO). All members contain a redox-active CXXC motif and may function as PDOs. The archaeal proteins Mj0307 and Mt807 show structures more similar to GRX, but activities more similar to TRX. Some members of the family are similar to PfPDO in that they contain a second CXXC motif located in a second TRX-fold subdomain at the N-terminus; the superimposable N- and C-terminal TRX subdomains form a compact structure. PfPDO is postulated to be the archaeal counterpart of bacterial DsbA and eukaryotic protein disulfide isomerase (PDI). The C-terminal CXXC motif of PfPDO is required for its oxidase, reductase and isomerase activities. Also included in the family is the C-terminal TRX-fold subdomain of the N-terminal domain (NTD) of bacteri
Probab=97.21 E-value=0.002 Score=39.77 Aligned_cols=58 Identities=21% Similarity=0.197 Sum_probs=40.8
Q ss_pred ceEEecccCChhhhHHHHHHHhh-----CCCeeEEEcCCCCChhHHHhhCCCCCcccEEEeCCeeee
Q 027524 3 EVKLHGGLLSPFNYRVVCALKLK-----GIPFELIKEDLSNKSALLLKYNPVHKKIPVLVHGGKPVC 64 (222)
Q Consensus 3 ~~~L~~~~~s~~~~~v~~~l~~~-----gi~~~~~~v~~~~~~~~~~~~~p~~g~vP~L~~~g~~l~ 64 (222)
++++|+.++||+|.++.-+++.. ++++..+.++ .. +++...... ..+|++..+|..+.
T Consensus 2 ~v~~f~~~~C~~C~~~~~~l~~l~~~~~~i~~~~id~~--~~-~~l~~~~~i-~~vPti~i~~~~~~ 64 (67)
T cd02973 2 NIEVFVSPTCPYCPDAVQAANRIAALNPNISAEMIDAA--EF-PDLADEYGV-MSVPAIVINGKVEF 64 (67)
T ss_pred EEEEEECCCCCCcHHHHHHHHHHHHhCCceEEEEEEcc--cC-HhHHHHcCC-cccCEEEECCEEEE
Confidence 47899999999999999998876 4555555543 22 233333333 47999999887664
No 134
>COG4545 Glutaredoxin-related protein [Posttranslational modification, protein turnover, chaperones]
Probab=97.14 E-value=0.002 Score=40.16 Aligned_cols=63 Identities=25% Similarity=0.286 Sum_probs=47.6
Q ss_pred CcceEEecccCChhhhHHHHHHHhhCCCeeEEEcCCC-----------CChhHHHhh--CCCCCcccEEEe-CCeeee
Q 027524 1 MAEVKLHGGLLSPFNYRVVCALKLKGIPFELIKEDLS-----------NKSALLLKY--NPVHKKIPVLVH-GGKPVC 64 (222)
Q Consensus 1 M~~~~L~~~~~s~~~~~v~~~l~~~gi~~~~~~v~~~-----------~~~~~~~~~--~p~~g~vP~L~~-~g~~l~ 64 (222)
|++.+||+...||-|-...-.|+-.+++|+.+.+.-. +..++|-+. |.. --+|+|.. ||.+|.
T Consensus 1 mskp~lfgsn~Cpdca~a~eyl~rl~v~yd~VeIt~Sm~NlKrFl~lRDs~~~Fd~vk~~gy-iGIPall~~d~~vVl 77 (85)
T COG4545 1 MSKPKLFGSNLCPDCAPAVEYLERLNVDYDFVEITESMANLKRFLHLRDSRPEFDEVKSNGY-IGIPALLTDDGKVVL 77 (85)
T ss_pred CCCceeeccccCcchHHHHHHHHHcCCCceeeehhhhhhhHHHHHhhhccchhHHhhhhcCc-ccceEEEeCCCcEEE
Confidence 7877999999999999999999999999999988532 344444332 222 35999884 676665
No 135
>PTZ00062 glutaredoxin; Provisional
Probab=97.10 E-value=0.0034 Score=48.01 Aligned_cols=69 Identities=20% Similarity=0.197 Sum_probs=53.0
Q ss_pred ceEEecc-----cCChhhhHHHHHHHhhCCCeeEEEcCCC-CChhHHHhhCCCCCcccEEEeCCeeeehhHHHHHH
Q 027524 3 EVKLHGG-----LLSPFNYRVVCALKLKGIPFELIKEDLS-NKSALLLKYNPVHKKIPVLVHGGKPVCESMVILEY 72 (222)
Q Consensus 3 ~~~L~~~-----~~s~~~~~v~~~l~~~gi~~~~~~v~~~-~~~~~~~~~~p~~g~vP~L~~~g~~l~es~aI~~y 72 (222)
++.||.- |.||||+++.-+|...||+|+...++-+ .....+...+.. ..+|.+..+|..|.+...+.+.
T Consensus 114 ~Vvvf~Kg~~~~p~C~~C~~~k~~L~~~~i~y~~~DI~~d~~~~~~l~~~sg~-~TvPqVfI~G~~IGG~d~l~~l 188 (204)
T PTZ00062 114 KILLFMKGSKTFPFCRFSNAVVNMLNSSGVKYETYNIFEDPDLREELKVYSNW-PTYPQLYVNGELIGGHDIIKEL 188 (204)
T ss_pred CEEEEEccCCCCCCChhHHHHHHHHHHcCCCEEEEEcCCCHHHHHHHHHHhCC-CCCCeEEECCEEEcChHHHHHH
Confidence 4667733 6899999999999999999998888644 223444555554 6899999999999888777763
No 136
>cd03199 GST_C_GRX2 GST_C family, Glutaredoxin 2 (GRX2) subfamily; composed of bacterial proteins similar to E. coli GRX2, an atypical GRX with a molecular mass of about 24kD (most GRXs range from 9-12kD). GRX2 adopts a GST fold containing an N-terminal thioredoxin-fold domain and a C-terminal alpha helical domain. It contains a redox active CXXC motif located in the N-terminal domain, but is not able to reduce ribonucleotide reductase like other GRXs. However, it catalyzes GSH-dependent protein disulfide reduction of other substrates efficiently. GRX2 is thought to function primarily in catalyzing the reversible glutathionylation of proteins in cellular redox regulation including stress responses.
Probab=97.09 E-value=0.00097 Score=46.82 Aligned_cols=69 Identities=14% Similarity=0.263 Sum_probs=51.9
Q ss_pred HHHHHHHHHHHHHHHHHhcccCCCCccccCCCChhHHHHHHHHHHHHHHHHhhcccccCCCCCchHHHHHHHhcccchh
Q 027524 116 DQENTMKEILEMLQIVEEHGLGEKKFFHGDKIGLVDIAFGSIVHWLQIIEDIVGVKLFESHKFPGLHAWLKNYKQVPVV 194 (222)
Q Consensus 116 ~~~~~~~~~~~~l~~l~e~~L~~~~~l~G~~~s~AD~~l~~~l~~~~~~~~~~~~~~~~~~~~p~l~~w~~~~~~~p~~ 194 (222)
+.......+...|..+ +.++...... ++++|+-|+.+|++|..+.... |..+ -|++.+|+++|++.-.|
T Consensus 57 ~t~~~i~~l~~~L~~l-~~ll~~~~~~-n~~ls~DDi~lFp~LR~Lt~vk---gi~~-----P~~V~~Y~~~~s~~t~V 125 (128)
T cd03199 57 NTPQYIAALNALLEEL-DPLILSSEAV-NGQLSTDDIILFPILRNLTLVK---GLVF-----PPKVKAYLERMSALTKV 125 (128)
T ss_pred ccHHHHHHHHHHHHHH-HHHHcCcccc-CCcCCHHHHHHHHHHhhhhhhc---CCCC-----CHHHHHHHHHHHHHhCC
Confidence 3446777888888889 8888544443 5579999999999999996542 4332 28999999999986544
No 137
>cd03036 ArsC_like Arsenate Reductase (ArsC) family, unknown subfamily; uncharacterized proteins containing a CXXC motif with similarity to thioredoxin (TRX)-fold arsenic reductases, ArsC. Proteins containing a redox active CXXC motif like TRX and glutaredoxin (GRX) function as protein disulfide oxidoreductases, altering the redox state of target proteins via the reversible oxidation of the active site dithiol. ArsC catalyzes the reduction of arsenate [As(V)] to arsenite [As(III)], using reducing equivalents derived from glutathione via GRX, through a single catalytic cysteine.
Probab=96.92 E-value=0.0021 Score=44.29 Aligned_cols=34 Identities=12% Similarity=-0.033 Sum_probs=31.2
Q ss_pred eEEecccCChhhhHHHHHHHhhCCCeeEEEcCCC
Q 027524 4 VKLHGGLLSPFNYRVVCALKLKGIPFELIKEDLS 37 (222)
Q Consensus 4 ~~L~~~~~s~~~~~v~~~l~~~gi~~~~~~v~~~ 37 (222)
++||+.+.||+|++++-+|+..|++|+.+.+.-.
T Consensus 1 i~iY~~~~C~~c~ka~~~L~~~~i~~~~idi~~~ 34 (111)
T cd03036 1 LKFYEYPKCSTCRKAKKWLDEHGVDYTAIDIVEE 34 (111)
T ss_pred CEEEECCCCHHHHHHHHHHHHcCCceEEecccCC
Confidence 5899999999999999999999999999988543
No 138
>KOG1147 consensus Glutamyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=96.89 E-value=0.00087 Score=57.30 Aligned_cols=115 Identities=16% Similarity=0.283 Sum_probs=78.6
Q ss_pred eCCeeeehhHHHHHHHHhhCC-CCCCCCCCHHHHHHHHHHHHHHhhhcchhhhhhcCHHHHHHHHHHHHHHHHHHHhccc
Q 027524 58 HGGKPVCESMVILEYIEETWP-QNPLMPSDPYDRAQARFWINFAENKGAAVWKLFRSIEDQENTMKEILEMLQIVEEHGL 136 (222)
Q Consensus 58 ~~g~~l~es~aI~~yL~~~~~-~~~l~p~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~e~~L 136 (222)
.+|..+..+..+..|.+.... .+.+|+.+ .++.+++.|+++... .....+...+..+ +..|
T Consensus 43 ~d~~~l~~a~~~~~~~~~~~~~~~~lf~~~-~d~~~vd~w~~~s~~----------------~~~~~~s~~~~~l-d~~l 104 (712)
T KOG1147|consen 43 LDGRKLNGATEPVVYSAALAKADPKLFGNN-IDRSQVDHWVSFSST----------------FSFDEISSSLSEL-DKFL 104 (712)
T ss_pred cccccccCCccchhhhhhhcccCHhHcCCc-ccHHHHHHHHHHhhh----------------cchHHHHHHHHHH-Hhhh
Confidence 346666666666677654432 22478777 789999999988743 1233445667788 8888
Q ss_pred CCCCccccCCCChhHHHHHHHHHHHHHHHHhhcccccCCCCCchHHHHHHHhcccchh
Q 027524 137 GEKKFFHGDKIGLVDIAFGSIVHWLQIIEDIVGVKLFESHKFPGLHAWLKNYKQVPVV 194 (222)
Q Consensus 137 ~~~~~l~G~~~s~AD~~l~~~l~~~~~~~~~~~~~~~~~~~~p~l~~w~~~~~~~p~~ 194 (222)
.-..||+|.++|+||+++|.+++.-..+.+.... .+.+-++.+|++-.+..++.
T Consensus 105 ~~~t~lvg~sls~Ad~aiw~~l~~n~~~~~~lk~----~k~~~~v~Rw~~~~~~~~a~ 158 (712)
T KOG1147|consen 105 VLRTFLVGNSLSIADFAIWGALHSNGMRQEQLKA----KKDYQNVERWYDLPEFQEAH 158 (712)
T ss_pred hHHHHhhccchhHHHHHHHHHHhcccchHHHHHh----hCCchhhhhhcCcHhHHHHH
Confidence 8788999999999999999999876433332111 34678999999844433333
No 139
>PF04399 Glutaredoxin2_C: Glutaredoxin 2, C terminal domain; InterPro: IPR007494 Glutaredoxins [, , ], also known as thioltransferases (disulphide reductases, are small proteins of approximately one hundred amino-acid residues which utilise glutathione and NADPH as cofactors. Oxidized glutathione is regenerated by glutathione reductase. Together these components compose the glutathione system []. Glutaredoxin functions as an electron carrier in the glutathione-dependent synthesis of deoxyribonucleotides by the enzyme ribonucleotide reductase. Like thioredoxin, which functions in a similar way, glutaredoxin possesses an active centre disulphide bond []. It exists in either a reduced or an oxidized form where the two cysteine residues are linked in an intramolecular disulphide bond. Glutaredoxin has been sequenced in a variety of species. On the basis of extensive sequence similarity, it has been proposed [] that Vaccinia virus protein O2L is most probably a glutaredoxin. Finally, it must be noted that Bacteriophage T4 thioredoxin seems also to be evolutionary related. In position 5 of the pattern T4 thioredoxin has Val instead of Pro. Unlike other glutaredoxins, glutaredoxin 2 (Grx2) cannot reduce ribonucleotide reductase. Grx2 has significantly higher catalytic activity in the reduction of mixed disulphides with glutathione (GSH) compared with other glutaredoxins. The active site residues (Cys9-Pro10-Tyr11-Cys12, in Escherichia coli Grx2, P39811 from SWISSPROT), which are found at the interface between the N- and C-terminal domains are identical to other glutaredoxins, but there is no other similarity between glutaredoxin 2 and other glutaredoxins. Grx2 is structurally similar to glutathione-S-transferases (GST), but there is no obvious sequence similarity. The inter-domain contacts are mainly hydrophobic, suggesting that the two domains are unlikely to be stable on their own. Both domains are needed for correct folding and activity of Grx2. It is thought that the primary function of Grx2 is to catalyse reversible glutathionylation of proteins with GSH in cellular redox regulation including the response to oxidative stress. The N-terminal domain is IPR004045 from INTERPRO.; PDB: 1G7O_A 3IR4_A.
Probab=96.85 E-value=0.0025 Score=45.16 Aligned_cols=70 Identities=20% Similarity=0.324 Sum_probs=50.1
Q ss_pred HHHHHHHHHHHHHHHHHHhcccCCCCccccCCCChhHHHHHHHHHHHHHHHHhhcccccCCCCCchHHHHHHHhcccchh
Q 027524 115 EDQENTMKEILEMLQIVEEHGLGEKKFFHGDKIGLVDIAFGSIVHWLQIIEDIVGVKLFESHKFPGLHAWLKNYKQVPVV 194 (222)
Q Consensus 115 ~~~~~~~~~~~~~l~~l~e~~L~~~~~l~G~~~s~AD~~l~~~l~~~~~~~~~~~~~~~~~~~~p~l~~w~~~~~~~p~~ 194 (222)
++..+..+.+...|..| +.++.......| ++|+-|+.+|+.|+.+.... |..+ -|++.+|.++|.+...|
T Consensus 55 ~~t~~~i~~l~~~L~~L-e~ll~~~~~~n~-~LS~dDi~lFp~LR~Ltivk---gi~~-----P~~V~~Y~~~~s~~t~V 124 (132)
T PF04399_consen 55 AKTPELIAELNADLEEL-EPLLASPNAVNG-ELSIDDIILFPILRSLTIVK---GIQW-----PPKVRAYMDRMSKATGV 124 (132)
T ss_dssp HCHHHHHHHHHHHHHHH-HHH-SCTTBTTS-S--HHHHHHHHHHHHHCTCT---TS--------HHHHHHHHHHHHHHT-
T ss_pred HcCHHHHHHHHHHHHHH-HHHhccccccCC-CCCHHHHHHHHHHhhhhhcc---CCcC-----CHHHHHHHHHHHHHcCC
Confidence 34567788889999999 999986656555 89999999999999994332 4333 38999999999986554
No 140
>cd02977 ArsC_family Arsenate Reductase (ArsC) family; composed of TRX-fold arsenic reductases and similar proteins including the transcriptional regulator, Spx. ArsC catalyzes the reduction of arsenate [As(V)] to arsenite [As(III)], using reducing equivalents derived from glutathione (GSH) via glutaredoxin (GRX), through a single catalytic cysteine. This family of predominantly bacterial enzymes is unrelated to two other families of arsenate reductases which show similarity to low-molecular-weight acid phosphatases and phosphotyrosyl phosphatases. Spx is a general regulator that exerts negative and positive control over transcription initiation by binding to the C-terminal domain of the alpha subunit of RNA polymerase.
Probab=96.78 E-value=0.0034 Score=42.70 Aligned_cols=33 Identities=18% Similarity=0.243 Sum_probs=30.7
Q ss_pred eEEecccCChhhhHHHHHHHhhCCCeeEEEcCC
Q 027524 4 VKLHGGLLSPFNYRVVCALKLKGIPFELIKEDL 36 (222)
Q Consensus 4 ~~L~~~~~s~~~~~v~~~l~~~gi~~~~~~v~~ 36 (222)
+++|+.+.||+|++++-+|+..|++|+.+.+.-
T Consensus 1 i~iY~~~~C~~c~ka~~~L~~~~i~~~~idi~~ 33 (105)
T cd02977 1 ITIYGNPNCSTSRKALAWLEEHGIEYEFIDYLK 33 (105)
T ss_pred CEEEECCCCHHHHHHHHHHHHcCCCcEEEeecc
Confidence 579999999999999999999999999998853
No 141
>PRK01655 spxA transcriptional regulator Spx; Reviewed
Probab=96.77 E-value=0.0034 Score=44.58 Aligned_cols=33 Identities=18% Similarity=0.023 Sum_probs=31.1
Q ss_pred eEEecccCChhhhHHHHHHHhhCCCeeEEEcCC
Q 027524 4 VKLHGGLLSPFNYRVVCALKLKGIPFELIKEDL 36 (222)
Q Consensus 4 ~~L~~~~~s~~~~~v~~~l~~~gi~~~~~~v~~ 36 (222)
+++|+.+.|++|++++-+|+..||+|+.+.+.-
T Consensus 2 i~iY~~~~C~~C~ka~~~L~~~gi~~~~idi~~ 34 (131)
T PRK01655 2 VTLFTSPSCTSCRKAKAWLEEHDIPFTERNIFS 34 (131)
T ss_pred EEEEeCCCChHHHHHHHHHHHcCCCcEEeeccC
Confidence 899999999999999999999999999998853
No 142
>TIGR00412 redox_disulf_2 small redox-active disulfide protein 2. This small protein is found in three archaeal species so far (Methanococcus jannaschii, Archeoglobus fulgidus, and Methanobacterium thermoautotrophicum) as well as in Anabaena PCC7120. It is homologous to thioredoxins, glutaredoxins, and protein disulfide isomerases, and shares with them a redox-active disulfide. The redox active disulfide region CXXC motif resembles neither thioredoxin nor glutaredoxin. A closely related protein found in the same three Archaea, described by redox_disulf_1, has a glutaredoxin-like CP[YH]C sequence; it has been characterized in functional assays as redox-active but unlikely to be a thioredoxin or glutaredoxin.
Probab=96.72 E-value=0.012 Score=37.44 Aligned_cols=57 Identities=19% Similarity=0.102 Sum_probs=42.0
Q ss_pred CcceEEecccCChhhhHH----HHHHHhhCCCeeEEEcCCCCChhHHHhhCCCCCcccEEEeCCeeee
Q 027524 1 MAEVKLHGGLLSPFNYRV----VCALKLKGIPFELIKEDLSNKSALLLKYNPVHKKIPVLVHGGKPVC 64 (222)
Q Consensus 1 M~~~~L~~~~~s~~~~~v----~~~l~~~gi~~~~~~v~~~~~~~~~~~~~p~~g~vP~L~~~g~~l~ 64 (222)
|. +.+|. ++||.|..+ .-+++..|++++.+.++- .++..+.+- ..+|++..||..+.
T Consensus 1 m~-i~~~a-~~C~~C~~~~~~~~~~~~e~~~~~~~~~v~~---~~~a~~~~v--~~vPti~i~G~~~~ 61 (76)
T TIGR00412 1 MK-IQIYG-TGCANCQMTEKNVKKAVEELGIDAEFEKVTD---MNEILEAGV--TATPGVAVDGELVI 61 (76)
T ss_pred CE-EEEEC-CCCcCHHHHHHHHHHHHHHcCCCeEEEEeCC---HHHHHHcCC--CcCCEEEECCEEEE
Confidence 44 77877 999999988 668888899999988872 223333333 47999999886653
No 143
>cd03032 ArsC_Spx Arsenate Reductase (ArsC) family, Spx subfamily; Spx is a unique RNA polymerase (RNAP)-binding protein present in bacilli and some mollicutes. It inhibits transcription by binding to the C-terminal domain of the alpha subunit of RNAP, disrupting complex formation between RNAP and certain transcriptional activator proteins like ResD and ComA. In response to oxidative stress, Spx can also activate transcription, making it a general regulator that exerts both positive and negative control over transcription initiation. Spx has been shown to exert redox-sensitive transcriptional control over genes like trxA (TRX) and trxB (TRX reductase), genes that function in thiol homeostasis. This redox-sensitive activity is dependent on the presence of a CXXC motif, present in some members of the Spx subfamily, that acts as a thiol/disulfide switch. Spx has also been shown to repress genes in a sulfate-dependent manner independent of the presence of the CXXC motif.
Probab=96.71 E-value=0.0048 Score=42.77 Aligned_cols=33 Identities=21% Similarity=0.029 Sum_probs=31.0
Q ss_pred eEEecccCChhhhHHHHHHHhhCCCeeEEEcCC
Q 027524 4 VKLHGGLLSPFNYRVVCALKLKGIPFELIKEDL 36 (222)
Q Consensus 4 ~~L~~~~~s~~~~~v~~~l~~~gi~~~~~~v~~ 36 (222)
+++|+.+.|+.|++++-+|+..|++|+.+.+.-
T Consensus 2 i~iY~~~~C~~c~ka~~~L~~~gi~~~~idi~~ 34 (115)
T cd03032 2 IKLYTSPSCSSCRKAKQWLEEHQIPFEERNLFK 34 (115)
T ss_pred EEEEeCCCCHHHHHHHHHHHHCCCceEEEecCC
Confidence 799999999999999999999999999998843
No 144
>PRK10026 arsenate reductase; Provisional
Probab=96.61 E-value=0.0034 Score=45.01 Aligned_cols=34 Identities=9% Similarity=0.084 Sum_probs=32.5
Q ss_pred CcceEEecccCChhhhHHHHHHHhhCCCeeEEEc
Q 027524 1 MAEVKLHGGLLSPFNYRVVCALKLKGIPFELIKE 34 (222)
Q Consensus 1 M~~~~L~~~~~s~~~~~v~~~l~~~gi~~~~~~v 34 (222)
|+.|++|+.+.|.-|++++-+|+..|++|+++.+
T Consensus 1 m~~i~iY~~p~Cst~RKA~~wL~~~gi~~~~~d~ 34 (141)
T PRK10026 1 MSNITIYHNPACGTSRNTLEMIRNSGTEPTIIHY 34 (141)
T ss_pred CCEEEEEeCCCCHHHHHHHHHHHHCCCCcEEEee
Confidence 8889999999999999999999999999999976
No 145
>PRK13344 spxA transcriptional regulator Spx; Reviewed
Probab=96.49 E-value=0.0084 Score=42.66 Aligned_cols=34 Identities=6% Similarity=-0.078 Sum_probs=31.5
Q ss_pred eEEecccCChhhhHHHHHHHhhCCCeeEEEcCCC
Q 027524 4 VKLHGGLLSPFNYRVVCALKLKGIPFELIKEDLS 37 (222)
Q Consensus 4 ~~L~~~~~s~~~~~v~~~l~~~gi~~~~~~v~~~ 37 (222)
+++|+.+.|+.|++++-+|+..||+|+.+.+.-.
T Consensus 2 i~iY~~~~C~~crkA~~~L~~~~i~~~~~d~~~~ 35 (132)
T PRK13344 2 IKIYTISSCTSCKKAKTWLNAHQLSYKEQNLGKE 35 (132)
T ss_pred EEEEeCCCCHHHHHHHHHHHHcCCCeEEEECCCC
Confidence 8999999999999999999999999999988543
No 146
>PRK12559 transcriptional regulator Spx; Provisional
Probab=96.42 E-value=0.0087 Score=42.50 Aligned_cols=34 Identities=12% Similarity=-0.099 Sum_probs=31.4
Q ss_pred eEEecccCChhhhHHHHHHHhhCCCeeEEEcCCC
Q 027524 4 VKLHGGLLSPFNYRVVCALKLKGIPFELIKEDLS 37 (222)
Q Consensus 4 ~~L~~~~~s~~~~~v~~~l~~~gi~~~~~~v~~~ 37 (222)
+++|+.+.|+.|+++.-+|+..||+|+.+.+.-.
T Consensus 2 i~iY~~~~C~~crkA~~~L~~~gi~~~~~di~~~ 35 (131)
T PRK12559 2 VVLYTTASCASCRKAKAWLEENQIDYTEKNIVSN 35 (131)
T ss_pred EEEEeCCCChHHHHHHHHHHHcCCCeEEEEeeCC
Confidence 8999999999999999999999999999988543
No 147
>TIGR01617 arsC_related transcriptional regulator, Spx/MgsR family. This model represents a portion of the proteins within the larger set covered by Pfam model pfam03960. That larger family includes a glutaredoxin-dependent arsenate reductase (TIGR00014). Characterized members of this family include Spx and MgsR from Bacillus subtili. Spx is a global regulator for response to thiol-specific oxidative stress. It interacts with RNA polymerase. MgsR (modulator of the general stress response, also called YqgZ) provides a second level of regulation for more than a third of the proteins in the B. subtilis general stress regulon controlled by Sigma-B.
Probab=96.32 E-value=0.0089 Score=41.55 Aligned_cols=33 Identities=18% Similarity=0.199 Sum_probs=30.5
Q ss_pred eEEecccCChhhhHHHHHHHhhCCCeeEEEcCC
Q 027524 4 VKLHGGLLSPFNYRVVCALKLKGIPFELIKEDL 36 (222)
Q Consensus 4 ~~L~~~~~s~~~~~v~~~l~~~gi~~~~~~v~~ 36 (222)
++||+.+.||+|+++.-+|+..|++|+.+.+.-
T Consensus 1 i~iY~~~~C~~c~ka~~~L~~~~i~~~~idi~~ 33 (117)
T TIGR01617 1 IKVYGSPNCTTCKKARRWLEANGIEYQFIDIGE 33 (117)
T ss_pred CEEEeCCCCHHHHHHHHHHHHcCCceEEEecCC
Confidence 579999999999999999999999999998853
No 148
>PF05768 DUF836: Glutaredoxin-like domain (DUF836); InterPro: IPR008554 Glutaredoxins [, , ], also known as thioltransferases (disulphide reductases, are small proteins of approximately one hundred amino-acid residues which utilise glutathione and NADPH as cofactors. Oxidized glutathione is regenerated by glutathione reductase. Together these components compose the glutathione system []. Glutaredoxin functions as an electron carrier in the glutathione-dependent synthesis of deoxyribonucleotides by the enzyme ribonucleotide reductase. Like thioredoxin, which functions in a similar way, glutaredoxin possesses an active centre disulphide bond []. It exists in either a reduced or an oxidized form where the two cysteine residues are linked in an intramolecular disulphide bond. Glutaredoxin has been sequenced in a variety of species. On the basis of extensive sequence similarity, it has been proposed [] that Vaccinia virus protein O2L is most probably a glutaredoxin. Finally, it must be noted that Bacteriophage T4 thioredoxin seems also to be evolutionary related. In position 5 of the pattern T4 thioredoxin has Val instead of Pro. This family contains several viral glutaredoxins, and many related bacterial and eukaryotic proteins of unknown function. The best characterised member of this family is G4L (P68460 from SWISSPROT) from Vaccinia virus (strain Western Reserve/WR) (VACV), which is necessary for virion morphogenesis and virus replication []. This is a cytomplasmic protein which functions as a shuttle in a redox pathway between membrane-associated E10R and L1R or F9L []. ; PDB: 1TTZ_A 1XPV_A 2FGX_A 2G2Q_C 1WJK_A.
Probab=96.08 E-value=0.031 Score=36.08 Aligned_cols=55 Identities=27% Similarity=0.326 Sum_probs=40.2
Q ss_pred ceEEecccCChhhhHHHHHHHhhC--CCeeEEEcCCCCChhHHHhhCCCCCcccEEEeCC
Q 027524 3 EVKLHGGLLSPFNYRVVCALKLKG--IPFELIKEDLSNKSALLLKYNPVHKKIPVLVHGG 60 (222)
Q Consensus 3 ~~~L~~~~~s~~~~~v~~~l~~~g--i~~~~~~v~~~~~~~~~~~~~p~~g~vP~L~~~g 60 (222)
+++||+-++|+.|..+.-.|+... .+++...+|..+....+...+ ..||+|..+|
T Consensus 1 ~l~l~~k~~C~LC~~a~~~L~~~~~~~~~~l~~vDI~~d~~l~~~Y~---~~IPVl~~~~ 57 (81)
T PF05768_consen 1 TLTLYTKPGCHLCDEAKEILEEVAAEFPFELEEVDIDEDPELFEKYG---YRIPVLHIDG 57 (81)
T ss_dssp -EEEEE-SSSHHHHHHHHHHHHCCTTSTCEEEEEETTTTHHHHHHSC---TSTSEEEETT
T ss_pred CEEEEcCCCCChHHHHHHHHHHHHhhcCceEEEEECCCCHHHHHHhc---CCCCEEEEcC
Confidence 479999999999999999999654 556677777775445444433 3799999877
No 149
>cd03035 ArsC_Yffb Arsenate Reductase (ArsC) family, Yffb subfamily; Yffb is an uncharacterized bacterial protein encoded by the yffb gene, related to the thioredoxin-fold arsenic reductases, ArsC. The structure of Yffb and the conservation of the catalytic cysteine suggest that it is likely to function as a glutathione (GSH)-dependent thiol reductase. ArsC catalyzes the reduction of arsenate [As(V)] to arsenite [As(III)], using reducing equivalents derived from GSH via glutaredoxin, through a single catalytic cysteine.
Probab=96.07 E-value=0.016 Score=39.48 Aligned_cols=32 Identities=13% Similarity=0.089 Sum_probs=30.2
Q ss_pred eEEecccCChhhhHHHHHHHhhCCCeeEEEcC
Q 027524 4 VKLHGGLLSPFNYRVVCALKLKGIPFELIKED 35 (222)
Q Consensus 4 ~~L~~~~~s~~~~~v~~~l~~~gi~~~~~~v~ 35 (222)
+++|+.+.|+.|++++-+|+..|++|+.+.+.
T Consensus 1 i~iy~~~~C~~crka~~~L~~~~i~~~~~di~ 32 (105)
T cd03035 1 ITLYGIKNCDTVKKARKWLEARGVAYTFHDYR 32 (105)
T ss_pred CEEEeCCCCHHHHHHHHHHHHcCCCeEEEecc
Confidence 58999999999999999999999999999884
No 150
>cd03033 ArsC_15kD Arsenate Reductase (ArsC) family, 15kD protein subfamily; composed of proteins of unknown function with similarity to thioredoxin-fold arsenic reductases, ArsC. It is encoded by an ORF present in a gene cluster associated with nitrogen fixation that also encodes dinitrogenase reductase ADP-ribosyltransferase (DRAT) and dinitrogenase reductase activating glycohydrolase (DRAG). ArsC catalyzes the reduction of arsenate [As(V)] to arsenite [As(III)], using reducing equivalents derived from glutathione via glutaredoxin, through a single catalytic cysteine.
Probab=95.97 E-value=0.012 Score=40.68 Aligned_cols=33 Identities=15% Similarity=-0.009 Sum_probs=30.8
Q ss_pred ceEEecccCChhhhHHHHHHHhhCCCeeEEEcC
Q 027524 3 EVKLHGGLLSPFNYRVVCALKLKGIPFELIKED 35 (222)
Q Consensus 3 ~~~L~~~~~s~~~~~v~~~l~~~gi~~~~~~v~ 35 (222)
.++||+.+.|+.|++++-+|+..|++|+.+.+-
T Consensus 1 ~i~iy~~p~C~~crkA~~~L~~~gi~~~~~d~~ 33 (113)
T cd03033 1 DIIFYEKPGCANNARQKALLEAAGHEVEVRDLL 33 (113)
T ss_pred CEEEEECCCCHHHHHHHHHHHHcCCCcEEeehh
Confidence 379999999999999999999999999999874
No 151
>PF11287 DUF3088: Protein of unknown function (DUF3088); InterPro: IPR021439 This family of proteins with unknown function appears to be restricted to Proteobacteria.
Probab=95.70 E-value=0.047 Score=37.11 Aligned_cols=68 Identities=19% Similarity=0.292 Sum_probs=46.7
Q ss_pred CChhhhHHHHHHHhh---CCCeeEEEcCCC-CChhHHHhhCCCCCcccEEEe-CC-------------eeeehhHHHHHH
Q 027524 11 LSPFNYRVVCALKLK---GIPFELIKEDLS-NKSALLLKYNPVHKKIPVLVH-GG-------------KPVCESMVILEY 72 (222)
Q Consensus 11 ~s~~~~~v~~~l~~~---gi~~~~~~v~~~-~~~~~~~~~~p~~g~vP~L~~-~g-------------~~l~es~aI~~y 72 (222)
+||.|..+.=+|... .-..+++.|+.. .+.+-...+...+..+|+|+- +| ..|.++..|++|
T Consensus 23 ~Cp~c~~iEGlLa~~P~l~~~ldV~rV~f~RPR~~vi~llGE~~QslPvLVL~~~~~~~~~~~~~~~~rfi~d~~~I~~~ 102 (112)
T PF11287_consen 23 YCPHCAAIEGLLASFPDLRERLDVRRVDFPRPRQAVIALLGEANQSLPVLVLADGAPSPDDAGSHGGRRFIDDPRRILRY 102 (112)
T ss_pred ECCchHHHHhHHhhChhhhhcccEEEeCCCCchHHHHHHhChhccCCCEEEeCCCCCCcccccccCCeEEeCCHHHHHHH
Confidence 577887777777653 334555666665 333333445554578999984 33 379999999999
Q ss_pred HHhhCC
Q 027524 73 IEETWP 78 (222)
Q Consensus 73 L~~~~~ 78 (222)
|.++|+
T Consensus 103 La~r~g 108 (112)
T PF11287_consen 103 LAERHG 108 (112)
T ss_pred HHHHcC
Confidence 999987
No 152
>cd03030 GRX_SH3BGR Glutaredoxin (GRX) family, SH3BGR (SH3 domain binding glutamic acid-rich protein) subfamily; a recently-identified subfamily composed of SH3BGR and similar proteins possessing significant sequence similarity to GRX, but without a redox active CXXC motif. The SH3BGR gene was cloned in an effort to identify genes mapping to chromosome 21, which could be involved in the pathogenesis of congenital heart disease affecting Down syndrome newborns. Several human SH3BGR-like (SH3BGRL) genes have been identified since, mapping to different locations in the chromosome. Of these, SH3BGRL3 was identified as a tumor necrosis factor (TNF) alpha inhibitory protein and was also named TIP-B1. Upregulation of expression of SH3BGRL3 is associated with differentiation. It has been suggested that it functions as a regulator of differentiation-related signal transduction pathways.
Probab=95.60 E-value=0.11 Score=34.35 Aligned_cols=67 Identities=16% Similarity=0.134 Sum_probs=49.6
Q ss_pred eEEecccCCh------hhhHHHHHHHhhCCCeeEEEcCCC-CChhHHHhhC----CCCCcccEEEeCCeeeehhHHHHH
Q 027524 4 VKLHGGLLSP------FNYRVVCALKLKGIPFELIKEDLS-NKSALLLKYN----PVHKKIPVLVHGGKPVCESMVILE 71 (222)
Q Consensus 4 ~~L~~~~~s~------~~~~v~~~l~~~gi~~~~~~v~~~-~~~~~~~~~~----p~~g~vP~L~~~g~~l~es~aI~~ 71 (222)
+++|+.+.++ .|+++..+|.-+||+|+.+.++.+ ....+..+.. +. ..+|-+..++..|.+...+..
T Consensus 2 i~vY~ts~~g~~~~k~~~~~v~~lL~~k~I~f~eiDI~~d~~~r~em~~~~~~~~g~-~tvPQIFi~~~~iGg~ddl~~ 79 (92)
T cd03030 2 IKVYIASSSGSTEIKKRQQEVLGFLEAKKIEFEEVDISMNEENRQWMRENVPNENGK-PLPPQIFNGDEYCGDYEAFFE 79 (92)
T ss_pred EEEEEecccccHHHHHHHHHHHHHHHHCCCceEEEecCCCHHHHHHHHHhcCCCCCC-CCCCEEEECCEEeeCHHHHHH
Confidence 6788777654 466889999999999999999865 3334444443 23 579999999999888765555
No 153
>TIGR00411 redox_disulf_1 small redox-active disulfide protein 1. This protein is homologous to a family of proteins that includes thioredoxins, glutaredoxins, protein-disulfide isomerases, and others, some of which have several such domains. The sequence of this protein at the redox-active disufide site, CPYC, matches glutaredoxins rather than thioredoxins, although its overall sequence seems closer to thioredoxins. It is suggested to be a ribonucleotide-reducing system component distinct from thioredoxin or glutaredoxin.
Probab=95.47 E-value=0.087 Score=33.55 Aligned_cols=56 Identities=13% Similarity=0.199 Sum_probs=39.4
Q ss_pred eEEecccCChhhhHHHHHHHh----hCCCeeEEEcCCCCChhHHHhhCCCCCcccEEEeCCe
Q 027524 4 VKLHGGLLSPFNYRVVCALKL----KGIPFELIKEDLSNKSALLLKYNPVHKKIPVLVHGGK 61 (222)
Q Consensus 4 ~~L~~~~~s~~~~~v~~~l~~----~gi~~~~~~v~~~~~~~~~~~~~p~~g~vP~L~~~g~ 61 (222)
+++|+.++||+|..+.-.++. .+..+....+|.....+.... ... ..+|++..+|.
T Consensus 3 v~~f~~~~C~~C~~~~~~l~~l~~~~~~~~~~~~vd~~~~~~~~~~-~~v-~~vPt~~~~g~ 62 (82)
T TIGR00411 3 IELFTSPTCPYCPAAKRVVEEVAKEMGDAVEVEYINVMENPQKAME-YGI-MAVPAIVINGD 62 (82)
T ss_pred EEEEECCCCcchHHHHHHHHHHHHHhcCceEEEEEeCccCHHHHHH-cCC-ccCCEEEECCE
Confidence 789999999999988887754 355566667776544443333 333 47999998775
No 154
>COG1393 ArsC Arsenate reductase and related proteins, glutaredoxin family [Inorganic ion transport and metabolism]
Probab=95.36 E-value=0.053 Score=37.65 Aligned_cols=32 Identities=16% Similarity=0.206 Sum_probs=30.2
Q ss_pred eEEecccCChhhhHHHHHHHhhCCCeeEEEcC
Q 027524 4 VKLHGGLLSPFNYRVVCALKLKGIPFELIKED 35 (222)
Q Consensus 4 ~~L~~~~~s~~~~~v~~~l~~~gi~~~~~~v~ 35 (222)
+++|+.+-|.-|++++-+|+..||+|+++.+-
T Consensus 3 itiy~~p~C~t~rka~~~L~~~gi~~~~~~y~ 34 (117)
T COG1393 3 ITIYGNPNCSTCRKALAWLEEHGIEYTFIDYL 34 (117)
T ss_pred EEEEeCCCChHHHHHHHHHHHcCCCcEEEEee
Confidence 89999999999999999999999999998764
No 155
>TIGR01616 nitro_assoc nitrogenase-associated protein. This model describes a small family of uncharacterized proteins found so far in alpha and gamma proteobacteria and in Nostoc sp. PCC 7120, a cyanobacterium. The gene for this protein is associated with nitrogenase genes. This family shows sequence similarity to TIGR00014, a glutaredoxin-dependent arsenate reductase that converts arsentate to arsenite for disposal. This family is one of several included in Pfam model pfam03960.
Probab=95.25 E-value=0.033 Score=39.27 Aligned_cols=33 Identities=21% Similarity=0.029 Sum_probs=30.9
Q ss_pred ceEEecccCChhhhHHHHHHHhhCCCeeEEEcC
Q 027524 3 EVKLHGGLLSPFNYRVVCALKLKGIPFELIKED 35 (222)
Q Consensus 3 ~~~L~~~~~s~~~~~v~~~l~~~gi~~~~~~v~ 35 (222)
+++||+.+.|.-|++++-+|+..||+|+++.+-
T Consensus 2 ~i~iY~~p~Cst~RKA~~~L~~~gi~~~~~d~~ 34 (126)
T TIGR01616 2 TIIFYEKPGCANNARQKAALKASGHDVEVQDIL 34 (126)
T ss_pred eEEEEeCCCCHHHHHHHHHHHHCCCCcEEEecc
Confidence 589999999999999999999999999999873
No 156
>PHA02125 thioredoxin-like protein
Probab=95.20 E-value=0.083 Score=33.40 Aligned_cols=53 Identities=17% Similarity=0.220 Sum_probs=37.6
Q ss_pred eEEecccCChhhhHHHHHHHhhCCCeeEEEcCCCCChhHHHhhCCCCCcccEEEeCCe
Q 027524 4 VKLHGGLLSPFNYRVVCALKLKGIPFELIKEDLSNKSALLLKYNPVHKKIPVLVHGGK 61 (222)
Q Consensus 4 ~~L~~~~~s~~~~~v~~~l~~~gi~~~~~~v~~~~~~~~~~~~~p~~g~vP~L~~~g~ 61 (222)
+.+|+.++|+.|..+.-.|+ ++++....+|.+... ++...... ..+|++. +|.
T Consensus 2 iv~f~a~wC~~Ck~~~~~l~--~~~~~~~~vd~~~~~-~l~~~~~v-~~~PT~~-~g~ 54 (75)
T PHA02125 2 IYLFGAEWCANCKMVKPMLA--NVEYTYVDVDTDEGV-ELTAKHHI-RSLPTLV-NTS 54 (75)
T ss_pred EEEEECCCCHhHHHHHHHHH--HHhheEEeeeCCCCH-HHHHHcCC-ceeCeEE-CCE
Confidence 78899999999999888776 456777777765433 44444444 5899998 443
No 157
>PRK10853 putative reductase; Provisional
Probab=95.18 E-value=0.035 Score=38.63 Aligned_cols=32 Identities=19% Similarity=0.083 Sum_probs=30.2
Q ss_pred eEEecccCChhhhHHHHHHHhhCCCeeEEEcC
Q 027524 4 VKLHGGLLSPFNYRVVCALKLKGIPFELIKED 35 (222)
Q Consensus 4 ~~L~~~~~s~~~~~v~~~l~~~gi~~~~~~v~ 35 (222)
+++|+.+.|.-|++++-+|+..|++|+++.+-
T Consensus 2 i~iy~~~~C~t~rkA~~~L~~~~i~~~~~d~~ 33 (118)
T PRK10853 2 VTLYGIKNCDTIKKARRWLEAQGIDYRFHDYR 33 (118)
T ss_pred EEEEcCCCCHHHHHHHHHHHHcCCCcEEeehc
Confidence 89999999999999999999999999999773
No 158
>cd01659 TRX_superfamily Thioredoxin (TRX) superfamily; a large, diverse group of proteins containing a TRX-fold. Many members contain a classic TRX domain with a redox active CXXC motif. They function as protein disulfide oxidoreductases (PDOs), altering the redox state of target proteins via the reversible oxidation of their active site dithiol. The PDO members of this superfamily include TRX, protein disulfide isomerase (PDI), tlpA-like, glutaredoxin, NrdH redoxin, and the bacterial Dsb (DsbA, DsbC, DsbG, DsbE, DsbDgamma) protein families. Members of the superfamily that do not function as PDOs but contain a TRX-fold domain include phosducins, peroxiredoxins and glutathione (GSH) peroxidases, SCO proteins, GSH transferases (GST, N-terminal domain), arsenic reductases, TRX-like ferredoxins and calsequestrin, among others.
Probab=94.87 E-value=0.097 Score=30.59 Aligned_cols=54 Identities=28% Similarity=0.265 Sum_probs=36.6
Q ss_pred eEEecccCChhhhHHHHHHH-----hhCCCeeEEEcCCCCChhHHHhhCCCCCcccEEEe
Q 027524 4 VKLHGGLLSPFNYRVVCALK-----LKGIPFELIKEDLSNKSALLLKYNPVHKKIPVLVH 58 (222)
Q Consensus 4 ~~L~~~~~s~~~~~v~~~l~-----~~gi~~~~~~v~~~~~~~~~~~~~p~~g~vP~L~~ 58 (222)
+.+|+..+|++|++....+. ..++.+..+.++............+. ..+|++..
T Consensus 1 l~~~~~~~c~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~P~~~~ 59 (69)
T cd01659 1 LVLFYAPWCPFCQALRPVLAELALLNKGVKFEAVDVDEDPALEKELKRYGV-GGVPTLVV 59 (69)
T ss_pred CEEEECCCChhHHhhhhHHHHHHhhCCCcEEEEEEcCCChHHhhHHHhCCC-ccccEEEE
Confidence 35777889999999999999 45566666655544322222245666 78998875
No 159
>cd03026 AhpF_NTD_C TRX-GRX-like family, Alkyl hydroperoxide reductase F subunit (AhpF) N-terminal domain (NTD) subfamily, C-terminal TRX-fold subdomain; AhpF is a homodimeric flavoenzyme which catalyzes the NADH-dependent reduction of the peroxiredoxin AhpC, which then reduces hydrogen peroxide and organic hydroperoxides. AhpF contains an NTD containing two contiguous TRX-fold subdomains similar to Pyrococcus furiosus protein disulfide oxidoreductase (PfPDO). It also contains a catalytic core similar to TRX reductase containing FAD and NADH binding domains with an active site disulfide. The proposed mechanism of action of AhpF is similar to a TRX/TRX reductase system. The flow of reducing equivalents goes from NADH - catalytic core of AhpF - NTD of AhpF - AhpC - peroxide substrates. The catalytic CXXC motif of the NTD of AhpF is contained in its C-terminal TRX subdomain.
Probab=94.86 E-value=0.15 Score=33.51 Aligned_cols=58 Identities=19% Similarity=0.104 Sum_probs=39.4
Q ss_pred ceEEecccCChhhhHHHHHHHhh-----CCCeeEEEcCCCCChhHHHhhCCCCCcccEEEeCCeeee
Q 027524 3 EVKLHGGLLSPFNYRVVCALKLK-----GIPFELIKEDLSNKSALLLKYNPVHKKIPVLVHGGKPVC 64 (222)
Q Consensus 3 ~~~L~~~~~s~~~~~v~~~l~~~-----gi~~~~~~v~~~~~~~~~~~~~p~~g~vP~L~~~g~~l~ 64 (222)
.+.+|..++|++|..+.-+++.. ++.+..+.++ ...+.....+- ..+|++..||..+.
T Consensus 15 ~i~~F~~~~C~~C~~~~~~~~~l~~~~~~i~~~~vd~~--~~~e~a~~~~V--~~vPt~vidG~~~~ 77 (89)
T cd03026 15 NFETYVSLSCHNCPDVVQALNLMAVLNPNIEHEMIDGA--LFQDEVEERGI--MSVPAIFLNGELFG 77 (89)
T ss_pred EEEEEECCCCCCcHHHHHHHHHHHHHCCCceEEEEEhH--hCHHHHHHcCC--ccCCEEEECCEEEE
Confidence 47889999999999888777665 4555555543 33333334443 47999998887654
No 160
>COG0278 Glutaredoxin-related protein [Posttranslational modification, protein turnover, chaperones]
Probab=94.77 E-value=0.16 Score=33.87 Aligned_cols=66 Identities=18% Similarity=0.158 Sum_probs=47.7
Q ss_pred cccCChhhhHHHHHHHhhC-CCeeEEEcCCC-CChhHHHhhCCCCCcccEEEeCCeeeehhHHHHHHHH
Q 027524 8 GGLLSPFNYRVVCALKLKG-IPFELIKEDLS-NKSALLLKYNPVHKKIPVLVHGGKPVCESMVILEYIE 74 (222)
Q Consensus 8 ~~~~s~~~~~v~~~l~~~g-i~~~~~~v~~~-~~~~~~~~~~p~~g~vP~L~~~g~~l~es~aI~~yL~ 74 (222)
.+|-|+||.++--+|..+| ++|..+.|=.+ +-...+...+- |.++|-|-.+|..|..|..|.+-..
T Consensus 26 ~~P~CGFS~~~vqiL~~~g~v~~~~vnVL~d~eiR~~lk~~s~-WPT~PQLyi~GEfvGG~DIv~Em~q 93 (105)
T COG0278 26 EFPQCGFSAQAVQILSACGVVDFAYVDVLQDPEIRQGLKEYSN-WPTFPQLYVNGEFVGGCDIVREMYQ 93 (105)
T ss_pred CCCCCCccHHHHHHHHHcCCcceeEEeeccCHHHHhccHhhcC-CCCCceeeECCEEeccHHHHHHHHH
Confidence 4577999999999999999 67777766221 22222333333 4789999999999999987777543
No 161
>PF13192 Thioredoxin_3: Thioredoxin domain; PDB: 1ZYP_B 1ZYN_A 1HYU_A 1ILO_A 1J08_F 2YWM_B 2AYT_B 2HLS_B 1A8L_A 2K8S_B ....
Probab=94.22 E-value=0.44 Score=30.11 Aligned_cols=57 Identities=30% Similarity=0.361 Sum_probs=37.5
Q ss_pred eEEecccCChhhhHHHH----HHHhhCCCeeEEEcCCCCChhHHHhhCCCCCcccEEEeCCeeeehh
Q 027524 4 VKLHGGLLSPFNYRVVC----ALKLKGIPFELIKEDLSNKSALLLKYNPVHKKIPVLVHGGKPVCES 66 (222)
Q Consensus 4 ~~L~~~~~s~~~~~v~~----~l~~~gi~~~~~~v~~~~~~~~~~~~~p~~g~vP~L~~~g~~l~es 66 (222)
++++ .+.||+|..+.- ++...|++++...+ ...++..+. .. ..+|++..||..++..
T Consensus 3 I~v~-~~~C~~C~~~~~~~~~~~~~~~i~~ei~~~---~~~~~~~~y-gv-~~vPalvIng~~~~~G 63 (76)
T PF13192_consen 3 IKVF-SPGCPYCPELVQLLKEAAEELGIEVEIIDI---EDFEEIEKY-GV-MSVPALVINGKVVFVG 63 (76)
T ss_dssp EEEE-CSSCTTHHHHHHHHHHHHHHTTEEEEEEET---TTHHHHHHT-T--SSSSEEEETTEEEEES
T ss_pred EEEe-CCCCCCcHHHHHHHHHHHHhcCCeEEEEEc---cCHHHHHHc-CC-CCCCEEEECCEEEEEe
Confidence 6774 567999996655 45556877877776 223444333 33 4899999998776544
No 162
>cd03034 ArsC_ArsC Arsenate Reductase (ArsC) family, ArsC subfamily; arsenic reductases similar to that encoded by arsC on the R733 plasmid of Escherichia coli. E. coli ArsC catalyzes the reduction of arsenate [As(V)] to arsenite [As(III)], the first step in the detoxification of arsenic, using reducing equivalents derived from glutathione (GSH) via glutaredoxin (GRX). ArsC contains a single catalytic cysteine, within a thioredoxin fold, that forms a covalent thiolate-As(V) intermediate, which is reduced by GRX through a mixed GSH-arsenate intermediate. This family of predominantly bacterial enzymes is unrelated to two other families of arsenate reductases which show similarity to low-molecular-weight acid phosphatases and phosphotyrosyl phosphatases.
Probab=93.94 E-value=0.093 Score=36.12 Aligned_cols=31 Identities=13% Similarity=0.135 Sum_probs=29.3
Q ss_pred eEEecccCChhhhHHHHHHHhhCCCeeEEEc
Q 027524 4 VKLHGGLLSPFNYRVVCALKLKGIPFELIKE 34 (222)
Q Consensus 4 ~~L~~~~~s~~~~~v~~~l~~~gi~~~~~~v 34 (222)
+++|+.+.|.-|+++.-+|+..|++|+.+.+
T Consensus 1 i~iy~~~~C~t~rkA~~~L~~~~i~~~~~di 31 (112)
T cd03034 1 ITIYHNPRCSKSRNALALLEEAGIEPEIVEY 31 (112)
T ss_pred CEEEECCCCHHHHHHHHHHHHCCCCeEEEec
Confidence 5899999999999999999999999999876
No 163
>TIGR00014 arsC arsenate reductase (glutaredoxin). composed of two polypeptides, the products of the arsA and arsB genes. The pump alone produces resistance to arsenite and antimonite. This protein, ArsC, catalyzes the reduction of arsenate to arsenite, and thus extends resistance to include arsenate.
Probab=93.75 E-value=0.11 Score=35.98 Aligned_cols=32 Identities=22% Similarity=0.127 Sum_probs=29.7
Q ss_pred eEEecccCChhhhHHHHHHHhhCCCeeEEEcC
Q 027524 4 VKLHGGLLSPFNYRVVCALKLKGIPFELIKED 35 (222)
Q Consensus 4 ~~L~~~~~s~~~~~v~~~l~~~gi~~~~~~v~ 35 (222)
+++|+.+.|.-|++++-+|+..|++|+.+.+-
T Consensus 1 i~iy~~~~C~t~rkA~~~L~~~~i~~~~~di~ 32 (114)
T TIGR00014 1 VTIYHNPRCSKSRNTLALLEDKGIEPEVVKYL 32 (114)
T ss_pred CEEEECCCCHHHHHHHHHHHHCCCCeEEEecc
Confidence 58999999999999999999999999998763
No 164
>PF04908 SH3BGR: SH3-binding, glutamic acid-rich protein; InterPro: IPR006993 This family of proteins, which contains SH3BGRL3, is functionally uncharacterised. SH3BGRL3 is a highly conserved small protein, which is widely expressed and shows a significant similarity to glutaredoxin 1 (GRX1) of Escherichia coli which is predicted to belong to the thioredoxin superfamily. However, SH3BGRL3 lacks both conserved cysteine residues, which characterise the enzymatic active site of GRX. This structural feature raises the possibility that SH3BGRL3 and its homologues could function as endogenous modulators of GRX activity []. ; PDB: 1SJ6_A 1U6T_A 1WRY_A 1T1V_B 1J0F_A 2CT6_A.
Probab=92.38 E-value=0.71 Score=31.01 Aligned_cols=68 Identities=21% Similarity=0.251 Sum_probs=39.5
Q ss_pred CcceEEecccCChh------hhHHHHHHHhhCCCeeEEEcCCC-CChhHHHhhC------CCC--CcccEEEeCCeeeeh
Q 027524 1 MAEVKLHGGLLSPF------NYRVVCALKLKGIPFELIKEDLS-NKSALLLKYN------PVH--KKIPVLVHGGKPVCE 65 (222)
Q Consensus 1 M~~~~L~~~~~s~~------~~~v~~~l~~~gi~~~~~~v~~~-~~~~~~~~~~------p~~--g~vP~L~~~g~~l~e 65 (222)
|. +++|..+.++. .+++..+|+.++|+|+.+.+..+ ....+.+... |.+ .-.|.+..++.-+.+
T Consensus 1 m~-I~vy~ss~sg~~~ikk~q~~v~~iL~a~kI~fe~vDIa~~e~~r~~mr~~~g~~~~~~~~~~~lpPqiF~~~~Y~Gd 79 (99)
T PF04908_consen 1 MV-IKVYISSISGSREIKKRQQRVLMILEAKKIPFEEVDIAMDEEARQWMRENAGPEEKDPGNGKPLPPQIFNGDEYCGD 79 (99)
T ss_dssp -S-EEEEE-SS-SSHHHHHHHHHHHHHHHHTT--EEEEETTT-HHHHHHHHHHT--CCCS-TSTT--S-EEEETTEEEEE
T ss_pred CE-EEEEEecccCCHHHHHHHHHHHHHHHHcCCCcEEEeCcCCHHHHHHHHHhccccccCCCCCCCCCCEEEeCCEEEee
Confidence 44 78888776653 45899999999999999999765 3334444433 111 234688888876655
Q ss_pred hHHH
Q 027524 66 SMVI 69 (222)
Q Consensus 66 s~aI 69 (222)
=-.+
T Consensus 80 ye~f 83 (99)
T PF04908_consen 80 YEDF 83 (99)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 4443
No 165
>KOG0911 consensus Glutaredoxin-related protein [Posttranslational modification, protein turnover, chaperones]
Probab=91.19 E-value=0.76 Score=35.41 Aligned_cols=66 Identities=14% Similarity=0.141 Sum_probs=50.0
Q ss_pred cccCChhhhHHHHHHHhhCCCeeEEEcCCC-CChhHHHhhCCCCCcccEEEeCCeeeehhHHHHHHHH
Q 027524 8 GGLLSPFNYRVVCALKLKGIPFELIKEDLS-NKSALLLKYNPVHKKIPVLVHGGKPVCESMVILEYIE 74 (222)
Q Consensus 8 ~~~~s~~~~~v~~~l~~~gi~~~~~~v~~~-~~~~~~~~~~p~~g~vP~L~~~g~~l~es~aI~~yL~ 74 (222)
..|-|++++.+.-+|...|++|....|-.+ .-..-.+..+- |.+.|-|-.+|..+.++..|.+-+.
T Consensus 150 ~~P~CGFS~~~v~iL~~~nV~~~~fdIL~DeelRqglK~fSd-WPTfPQlyI~GEFiGGlDIl~~m~~ 216 (227)
T KOG0911|consen 150 EEPKCGFSRQLVGILQSHNVNYTIFDVLTDEELRQGLKEFSD-WPTFPQLYVKGEFIGGLDILKEMHE 216 (227)
T ss_pred CcccccccHHHHHHHHHcCCCeeEEeccCCHHHHHHhhhhcC-CCCccceeECCEeccCcHHHHHHhh
Confidence 357799999999999999999999888443 22223334444 4789999999999998877766543
No 166
>PF03960 ArsC: ArsC family; InterPro: IPR006660 Several bacterial taxon have a chromosomal resistance system, encoded by the ars operon, for the detoxification of arsenate, arsenite, and antimonite []. This system transports arsenite and antimonite out of the cell. The pump is composed of two polypeptides, the products of the arsA and arsB genes. This two-subunit enzyme produces resistance to arsenite and antimonite. Arsenate, however, must first be reduced to arsenite before it is extruded. A third gene, arsC, expands the substrate specificity to allow for arsenate pumping and resistance. ArsC is an approximately 150-residue arsenate reductase that uses reduced glutathione (GSH) to convert arsenate to arsenite with a redox active cysteine residue in the active site. ArsC forms an active quaternary complex with GSH, arsenate, and glutaredoxin 1 (Grx1). The three ligands must be present simultaneously for reduction to occur []. The arsC family also comprises the Spx proteins which are GRAM-positive bacterial transcription factors that regulate the transcription of multiple genes in response to disulphide stress []. The arsC protein structure has been solved []. It belongs to the thioredoxin superfamily fold which is defined by a beta-sheet core surrounded by alpha-helices. The active cysteine residue of ArsC is located in the loop between the first beta-strand and the first helix, which is also conserved in the Spx protein and its homologues.; PDB: 2KOK_A 1SK1_A 1SK2_A 1JZW_A 1J9B_A 1S3C_A 1SD8_A 1SD9_A 1I9D_A 1SK0_A ....
Probab=85.87 E-value=1.1 Score=30.51 Aligned_cols=29 Identities=21% Similarity=0.217 Sum_probs=23.1
Q ss_pred ecccCChhhhHHHHHHHhhCCCeeEEEcC
Q 027524 7 HGGLLSPFNYRVVCALKLKGIPFELIKED 35 (222)
Q Consensus 7 ~~~~~s~~~~~v~~~l~~~gi~~~~~~v~ 35 (222)
|+.+.|.-|++++-+|+..|++|+.+.+.
T Consensus 1 Y~~~~C~t~rka~~~L~~~gi~~~~~d~~ 29 (110)
T PF03960_consen 1 YGNPNCSTCRKALKWLEENGIEYEFIDYK 29 (110)
T ss_dssp EE-TT-HHHHHHHHHHHHTT--EEEEETT
T ss_pred CcCCCCHHHHHHHHHHHHcCCCeEeehhh
Confidence 78899999999999999999999999874
No 167
>TIGR01295 PedC_BrcD bacteriocin transport accessory protein, putative. This model describes a small family of proteins believed to aid in the export of various class II bacteriocins, which are ribosomally-synthesized, non-lantibiotic bacterial peptide antibiotics. Members of this family are found in operons for pediocin PA-1 from Pediococcus acidilactici and brochocin-C from Brochothrix campestris.
Probab=85.77 E-value=6.1 Score=27.49 Aligned_cols=59 Identities=19% Similarity=0.226 Sum_probs=34.1
Q ss_pred eEEecccCChhhhHHHHHHHh----hCCCeeEEEcCCCC-----Ch---hHHHhhC----CCCCcccEEEe--CCeee
Q 027524 4 VKLHGGLLSPFNYRVVCALKL----KGIPFELIKEDLSN-----KS---ALLLKYN----PVHKKIPVLVH--GGKPV 63 (222)
Q Consensus 4 ~~L~~~~~s~~~~~v~~~l~~----~gi~~~~~~v~~~~-----~~---~~~~~~~----p~~g~vP~L~~--~g~~l 63 (222)
+..++.++||+|+.+.=.|+. .++++-.+.++... .. .++.... .. ..+|+++. +|..+
T Consensus 27 iv~f~~~~Cp~C~~~~P~l~~~~~~~~~~~y~vdvd~~~~~~~~~~~~~~~~~~~~~i~~~i-~~~PT~v~~k~Gk~v 103 (122)
T TIGR01295 27 TFFIGRKTCPYCRKFSGTLSGVVAQTKAPIYYIDSENNGSFEMSSLNDLTAFRSRFGIPTSF-MGTPTFVHITDGKQV 103 (122)
T ss_pred EEEEECCCChhHHHHhHHHHHHHHhcCCcEEEEECCCccCcCcccHHHHHHHHHHcCCcccC-CCCCEEEEEeCCeEE
Confidence 456788999999985554443 45666666665321 11 1333322 22 34998874 77544
No 168
>PF11801 Tom37_C: Tom37 C-terminal domain; InterPro: IPR019564 Tom37 is one of the outer membrane proteins that make up the TOM complex for guiding cytosolic mitochondrial beta-barrel proteins from the cytosol across the outer mitochondrial membrane into the intramembrane space. In conjunction with Tom70, it guides peptides without an mitochondrial targeting sequence (MTS) into Tom40, the protein that forms the passage through the outer membrane []. It has homology with metaxin, also part of the outer mitochondrial membrane beta-barrel protein transport complex []. This entry represents outer mitochondrial membrane transport complex proteins Tom37 and metaxin.; GO: 0006626 protein targeting to mitochondrion, 0005741 mitochondrial outer membrane
Probab=85.44 E-value=2.1 Score=31.74 Aligned_cols=38 Identities=29% Similarity=0.389 Sum_probs=32.2
Q ss_pred HHHHHHHHHHhcccCCC---CccccCC-CChhHHHHHHHHHHH
Q 027524 123 EILEMLQIVEEHGLGEK---KFFHGDK-IGLVDIAFGSIVHWL 161 (222)
Q Consensus 123 ~~~~~l~~l~e~~L~~~---~~l~G~~-~s~AD~~l~~~l~~~ 161 (222)
.-.+.+..| ++.|++. +|+.|+. +|-.||.+++.|.-+
T Consensus 112 ~a~~~l~~L-~~~L~~~~~~~~~f~~~~psslD~L~~ayL~l~ 153 (168)
T PF11801_consen 112 LAMECLSLL-EELLGEWEEARYFFGDSKPSSLDCLAFAYLALL 153 (168)
T ss_pred HHHHHHHHH-HHHHhhccccccccCCCCCCHHHHHHHHHHHHH
Confidence 456788888 8888877 8999977 999999999988776
No 169
>COG3019 Predicted metal-binding protein [General function prediction only]
Probab=85.21 E-value=4.1 Score=29.05 Aligned_cols=75 Identities=13% Similarity=-0.032 Sum_probs=50.0
Q ss_pred ceEEecccCChhhhHHHHHHHhhCCCeeEEEcCCCCChhHHHhhCCCCCcccEEEeCCeeeeh---hHHHHHHHHhhC
Q 027524 3 EVKLHGGLLSPFNYRVVCALKLKGIPFELIKEDLSNKSALLLKYNPVHKKIPVLVHGGKPVCE---SMVILEYIEETW 77 (222)
Q Consensus 3 ~~~L~~~~~s~~~~~v~~~l~~~gi~~~~~~v~~~~~~~~~~~~~p~~g~vP~L~~~g~~l~e---s~aI~~yL~~~~ 77 (222)
+|..|+.|.|++|..-.=.++.+|..+..+..+....-..-+.+-+.....=+.+.+|..|-. ..+|.+.|+++.
T Consensus 27 ~~~vyksPnCGCC~~w~~~mk~~Gf~Vk~~~~~d~~alK~~~gIp~e~~SCHT~VI~Gy~vEGHVPa~aI~~ll~~~p 104 (149)
T COG3019 27 EMVVYKSPNCGCCDEWAQHMKANGFEVKVVETDDFLALKRRLGIPYEMQSCHTAVINGYYVEGHVPAEAIARLLAEKP 104 (149)
T ss_pred eEEEEeCCCCccHHHHHHHHHhCCcEEEEeecCcHHHHHHhcCCChhhccccEEEEcCEEEeccCCHHHHHHHHhCCC
Confidence 588999999999999888999999988888775321100001111111344456678877633 367999999876
No 170
>PF00085 Thioredoxin: Thioredoxin; InterPro: IPR013766 Thioredoxins [, , , ] are small disulphide-containing redox proteins that have been found in all the kingdoms of living organisms. Thioredoxin serves as a general protein disulphide oxidoreductase. It interacts with a broad range of proteins by a redox mechanism based on reversible oxidation of two cysteine thiol groups to a disulphide, accompanied by the transfer of two electrons and two protons. The net result is the covalent interconversion of a disulphide and a dithiol. In the NADPH-dependent protein disulphide reduction, thioredoxin reductase (TR) catalyses the reduction of oxidised thioredoxin (trx) by NADPH using FAD and its redox-active disulphide; reduced thioredoxin then directly reduces the disulphide in the substrate protein []. Thioredoxin is present in prokaryotes and eukaryotes and the sequence around the redox-active disulphide bond is well conserved. All thioredoxins contain a cis-proline located in a loop preceding beta-strand 4, which makes contact with the active site cysteines, and is important for stability and function []. Thioredoxin belongs to a structural family that includes glutaredoxin, glutathione peroxidase, bacterial protein disulphide isomerase DsbA, and the N-terminal domain of glutathione transferase []. Thioredoxins have a beta-alpha unit preceding the motif common to all these proteins. A number of eukaryotic proteins contain domains evolutionary related to thioredoxin, most of them are protein disulphide isomerases (PDI). PDI (5.3.4.1 from EC) [, , ] is an endoplasmic reticulum multi-functional enzyme that catalyses the formation and rearrangement of disulphide bonds during protein folding []. All PDI contains two or three (ERp72) copies of the thioredoxin domain, each of which contributes to disulphide isomerase activity, but which are functionally non-equivalent []. Moreover, PDI exhibits chaperone-like activity towards proteins that contain no disulphide bonds, i.e. behaving independently of its disulphide isomerase activity []. The various forms of PDI which are currently known are: PDI major isozyme; a multifunctional protein that also function as the beta subunit of prolyl 4-hydroxylase (1.14.11.2 from EC), as a component of oligosaccharyl transferase (2.4.1.119 from EC), as thyroxine deiodinase (3.8.1.4 from EC), as glutathione-insulin transhydrogenase (1.8.4.2 from EC) and as a thyroid hormone-binding protein ERp60 (ER-60; 58 Kd microsomal protein). ERp60 was originally thought to be a phosphoinositide-specific phospholipase C isozyme and later to be a protease. ERp72. ERp5. Bacterial proteins that act as thiol:disulphide interchange proteins that allows disulphide bond formation in some periplasmic proteins also contain a thioredoxin domain. These proteins include: Escherichia coli DsbA (or PrfA) and its orthologs in Vibrio cholerae (TtcpG) and Haemophilus influenzae (Por). E. coli DsbC (or XpRA) and its orthologues in Erwinia chrysanthemi and H. influenzae. E. coli DsbD (or DipZ) and its H. influenzae orthologue. E. coli DsbE (or CcmG) and orthologues in H. influenzae. Rhodobacter capsulatus (Rhodopseudomonas capsulata) (HelX), Rhiziobiacae (CycY and TlpA). This entry represents the thioredoxin domain.; GO: 0045454 cell redox homeostasis; PDB: 3ED3_B 1EP7_A 1EP8_B 1TOF_A 2OE3_B 2OE1_B 2OE0_B 1V98_A 3H79_A 3CXG_A ....
Probab=81.19 E-value=12 Score=24.23 Aligned_cols=69 Identities=25% Similarity=0.304 Sum_probs=42.1
Q ss_pred eEEecccCChhhhHHHHHHH-----hhCCCeeEEEcCCCCChhHHHhhCCCCCcccEEEe--CCeee------ehhHHHH
Q 027524 4 VKLHGGLLSPFNYRVVCALK-----LKGIPFELIKEDLSNKSALLLKYNPVHKKIPVLVH--GGKPV------CESMVIL 70 (222)
Q Consensus 4 ~~L~~~~~s~~~~~v~~~l~-----~~gi~~~~~~v~~~~~~~~~~~~~p~~g~vP~L~~--~g~~l------~es~aI~ 70 (222)
+..++.++|+.|+...=.++ +.+ ++....+|...... +...--. ..+|++.. +|..+ .....|.
T Consensus 21 vv~f~~~~C~~C~~~~~~~~~~~~~~~~-~v~~~~vd~~~~~~-l~~~~~v-~~~Pt~~~~~~g~~~~~~~g~~~~~~l~ 97 (103)
T PF00085_consen 21 VVYFYAPWCPPCKAFKPILEKLAKEYKD-NVKFAKVDCDENKE-LCKKYGV-KSVPTIIFFKNGKEVKRYNGPRNAESLI 97 (103)
T ss_dssp EEEEESTTSHHHHHHHHHHHHHHHHTTT-TSEEEEEETTTSHH-HHHHTTC-SSSSEEEEEETTEEEEEEESSSSHHHHH
T ss_pred EEEEeCCCCCccccccceeccccccccc-ccccchhhhhccch-hhhccCC-CCCCEEEEEECCcEEEEEECCCCHHHHH
Confidence 45677889999998774443 333 66677777664433 3333344 58998873 66443 2445566
Q ss_pred HHHHh
Q 027524 71 EYIEE 75 (222)
Q Consensus 71 ~yL~~ 75 (222)
++|.+
T Consensus 98 ~~i~~ 102 (103)
T PF00085_consen 98 EFIEK 102 (103)
T ss_dssp HHHHH
T ss_pred HHHHc
Confidence 66654
No 171
>TIGR02187 GlrX_arch Glutaredoxin-like domain protein. This family of archaeal proteins contains a C-terminal domain with homology to bacterial and eukaryotic glutaredoxins, including a CPYC motif. There is an N-terminal domain which has even more distant homology to glutaredoxins. The name "glutaredoxin" may be inappropriate in the sense of working in tandem with glutathione and glutathione reductase which may not be present in the archaea. The overall domain structure appears to be related to bacterial alkylhydroperoxide reductases, but the homology may be distant enough that the function of this family is wholly different.
Probab=77.25 E-value=13 Score=28.49 Aligned_cols=54 Identities=11% Similarity=0.027 Sum_probs=34.1
Q ss_pred eEEecccCChhhhHHHHHHHhhCC---CeeEEEcCCCCChhHHHhhCCCCCcccEEEeC
Q 027524 4 VKLHGGLLSPFNYRVVCALKLKGI---PFELIKEDLSNKSALLLKYNPVHKKIPVLVHG 59 (222)
Q Consensus 4 ~~L~~~~~s~~~~~v~~~l~~~gi---~~~~~~v~~~~~~~~~~~~~p~~g~vP~L~~~ 59 (222)
+.+|+.++||+|..+.-+++..-- ......+|..... +....... ..+|++..+
T Consensus 137 I~~F~a~~C~~C~~~~~~l~~l~~~~~~i~~~~vD~~~~~-~~~~~~~V-~~vPtl~i~ 193 (215)
T TIGR02187 137 IEVFVTPTCPYCPYAVLMAHKFALANDKILGEMIEANENP-DLAEKYGV-MSVPKIVIN 193 (215)
T ss_pred EEEEECCCCCCcHHHHHHHHHHHHhcCceEEEEEeCCCCH-HHHHHhCC-ccCCEEEEe
Confidence 567889999999988877775432 2334455655433 33333333 479999863
No 172
>PRK15317 alkyl hydroperoxide reductase subunit F; Provisional
Probab=77.16 E-value=2.5 Score=37.22 Aligned_cols=72 Identities=15% Similarity=0.059 Sum_probs=44.2
Q ss_pred ceEEecccCChhhhHHHHHHHhhCCC---eeEEEcCCCCChhHHHhhCCCCCcccEEEeCCeeeehh----HHHHHHHHh
Q 027524 3 EVKLHGGLLSPFNYRVVCALKLKGIP---FELIKEDLSNKSALLLKYNPVHKKIPVLVHGGKPVCES----MVILEYIEE 75 (222)
Q Consensus 3 ~~~L~~~~~s~~~~~v~~~l~~~gi~---~~~~~v~~~~~~~~~~~~~p~~g~vP~L~~~g~~l~es----~aI~~yL~~ 75 (222)
.+++|..+.||||-.+.-+++...+. .+...+|.... +++.+..-. ..||++..+|..+.+. ..+++.+.+
T Consensus 119 ~i~~fv~~~Cp~Cp~~v~~~~~~a~~~~~i~~~~id~~~~-~~~~~~~~v-~~VP~~~i~~~~~~~g~~~~~~~~~~~~~ 196 (517)
T PRK15317 119 HFETYVSLSCHNCPDVVQALNLMAVLNPNITHTMIDGALF-QDEVEARNI-MAVPTVFLNGEEFGQGRMTLEEILAKLDT 196 (517)
T ss_pred EEEEEEcCCCCCcHHHHHHHHHHHHhCCCceEEEEEchhC-HhHHHhcCC-cccCEEEECCcEEEecCCCHHHHHHHHhc
Confidence 37899999999999877666554432 33333333333 334444444 5899999887665542 345666655
Q ss_pred h
Q 027524 76 T 76 (222)
Q Consensus 76 ~ 76 (222)
.
T Consensus 197 ~ 197 (517)
T PRK15317 197 G 197 (517)
T ss_pred c
Confidence 4
No 173
>PF09635 MetRS-N: MetRS-N binding domain; InterPro: IPR018285 This entry represents the N-terminal domain of methionyl-tRNA synthetase (MetRS). This N-terminal appended domain mediates non-catalytic complex formation through its interaction with a domain in the tRNA aminoacylation cofactor Arc1p. The interacting domains of MetRS, GluRS (glutamyl-tRNA synthetase) and Arc1p form a ternary complex resembling a classical GST homo-dimer []. Domain-swapping between symmetrically related MetRS-N and Arc1p-N domains generates a 2:2 tetramer held together by van der Waals forces. This domain is necessary for formation of the aminoacyl-tRNA synthetase complex necessary for tRNA nuclear export and shuttling as part of the translational apparatus. ; PDB: 2HSN_A.
Probab=76.72 E-value=2 Score=29.82 Aligned_cols=27 Identities=22% Similarity=0.428 Sum_probs=13.5
Q ss_pred cccEEEe--CCeeeehhHHHHHHHHhhCC
Q 027524 52 KIPVLVH--GGKPVCESMVILEYIEETWP 78 (222)
Q Consensus 52 ~vP~L~~--~g~~l~es~aI~~yL~~~~~ 78 (222)
.-|-|.+ +|..++|+.||++|+..-|.
T Consensus 35 ~~~~L~~~~~gF~L~e~NAIvrYl~nDF~ 63 (122)
T PF09635_consen 35 SGPLLKDKKSGFELFEPNAIVRYLANDFE 63 (122)
T ss_dssp -S--EEE-S--S----HHHHHHHHTT--T
T ss_pred ccceeeecCCceEEecccHHHHHHHhhcC
Confidence 4577864 78999999999999988653
No 174
>TIGR03143 AhpF_homolog putative alkyl hydroperoxide reductase F subunit. This family of thioredoxin reductase homologs is found adjacent to alkylhydroperoxide reductase C subunit predominantly in cases where there is only one C subunit in the genome and that genome is lacking the F subunit partner (also a thioredcxin reductase homolog) that is usually found (TIGR03140).
Probab=76.26 E-value=8.7 Score=34.23 Aligned_cols=58 Identities=19% Similarity=0.189 Sum_probs=37.8
Q ss_pred ceEEecccCChhhhHHHH----HHHhh-CCCeeEEEcCCCCChhHHHhhCCCCCcccEEEeCCeeee
Q 027524 3 EVKLHGGLLSPFNYRVVC----ALKLK-GIPFELIKEDLSNKSALLLKYNPVHKKIPVLVHGGKPVC 64 (222)
Q Consensus 3 ~~~L~~~~~s~~~~~v~~----~l~~~-gi~~~~~~v~~~~~~~~~~~~~p~~g~vP~L~~~g~~l~ 64 (222)
.+++|..+.||||-.+.- ++.+. +|..+.+.+... ++..+.... ..||++..||.++.
T Consensus 479 ~i~v~~~~~C~~Cp~~~~~~~~~~~~~~~i~~~~i~~~~~---~~~~~~~~v-~~vP~~~i~~~~~~ 541 (555)
T TIGR03143 479 NIKIGVSLSCTLCPDVVLAAQRIASLNPNVEAEMIDVSHF---PDLKDEYGI-MSVPAIVVDDQQVY 541 (555)
T ss_pred EEEEEECCCCCCcHHHHHHHHHHHHhCCCceEEEEECccc---HHHHHhCCc-eecCEEEECCEEEE
Confidence 378888899999986554 34444 677777766433 344433333 47999998886543
No 175
>TIGR03140 AhpF alkyl hydroperoxide reductase, F subunit. This enzyme is the partner of the peroxiredoxin (alkyl hydroperoxide reductase) AhpC which contains the peroxide-reactive cysteine. AhpF contains the reductant (NAD(P)H) binding domain (pfam00070) and presumably acts to resolve the disulfide which forms after oxidation of the active site cysteine in AphC. This proteins contains two paired conserved cysteine motifs, CxxCP and CxHCDGP.
Probab=75.81 E-value=2.5 Score=37.26 Aligned_cols=72 Identities=18% Similarity=0.106 Sum_probs=43.2
Q ss_pred ceEEecccCChhhhHHHHHHHhhCCC---eeEEEcCCCCChhHHHhhCCCCCcccEEEeCCeeeehh----HHHHHHHHh
Q 027524 3 EVKLHGGLLSPFNYRVVCALKLKGIP---FELIKEDLSNKSALLLKYNPVHKKIPVLVHGGKPVCES----MVILEYIEE 75 (222)
Q Consensus 3 ~~~L~~~~~s~~~~~v~~~l~~~gi~---~~~~~v~~~~~~~~~~~~~p~~g~vP~L~~~g~~l~es----~aI~~yL~~ 75 (222)
.+++|..+.||||-.+.-++....+. .+...+|-...++ +.+..-. ..||.+..+|..+.+. ..+++.+..
T Consensus 120 ~i~~f~~~~Cp~Cp~~v~~~~~~a~~~p~i~~~~id~~~~~~-~~~~~~v-~~VP~~~i~~~~~~~g~~~~~~~~~~l~~ 197 (515)
T TIGR03140 120 HFETYVSLTCQNCPDVVQALNQMALLNPNISHTMIDGALFQD-EVEALGI-QGVPAVFLNGEEFHNGRMDLAELLEKLEE 197 (515)
T ss_pred EEEEEEeCCCCCCHHHHHHHHHHHHhCCCceEEEEEchhCHH-HHHhcCC-cccCEEEECCcEEEecCCCHHHHHHHHhh
Confidence 37899999999999877776655443 2333344333333 3333343 5899999887666553 234455544
Q ss_pred h
Q 027524 76 T 76 (222)
Q Consensus 76 ~ 76 (222)
.
T Consensus 198 ~ 198 (515)
T TIGR03140 198 T 198 (515)
T ss_pred c
Confidence 3
No 176
>cd02984 TRX_PICOT TRX domain, PICOT (for PKC-interacting cousin of TRX) subfamily; PICOT is a protein that interacts with protein kinase C (PKC) theta, a calcium independent PKC isoform selectively expressed in skeletal muscle and T lymphocytes. PICOT contains an N-terminal TRX-like domain, which does not contain the catalytic CXXC motif, followed by one to three glutaredoxin domains. The TRX-like domain is required for interaction with PKC theta. PICOT inhibits the activation of c-Jun N-terminal kinase and the transcription factors, AP-1 and NF-kB, induced by PKC theta or T-cell activating stimuli.
Probab=75.22 E-value=13 Score=23.97 Aligned_cols=58 Identities=10% Similarity=0.028 Sum_probs=36.7
Q ss_pred eEEecccCChhhhHHHHHHHhh----CCCeeEEEcCCCCChhHHHhhCCCCCcccEEE--eCCeee
Q 027524 4 VKLHGGLLSPFNYRVVCALKLK----GIPFELIKEDLSNKSALLLKYNPVHKKIPVLV--HGGKPV 63 (222)
Q Consensus 4 ~~L~~~~~s~~~~~v~~~l~~~----gi~~~~~~v~~~~~~~~~~~~~p~~g~vP~L~--~~g~~l 63 (222)
+..++.++|+.|++..-.++.. +..+....+|......-....+. ..+|++. .+|..+
T Consensus 18 ~v~f~~~~C~~C~~~~~~l~~l~~~~~~~i~~~~vd~~~~~~~~~~~~i--~~~Pt~~~~~~g~~~ 81 (97)
T cd02984 18 VLHFWAPWAEPCKQMNQVFEELAKEAFPSVLFLSIEAEELPEISEKFEI--TAVPTFVFFRNGTIV 81 (97)
T ss_pred EEEEECCCCHHHHHHhHHHHHHHHHhCCceEEEEEccccCHHHHHhcCC--ccccEEEEEECCEEE
Confidence 4566778999999886666542 34566677776544443344554 4699876 366543
No 177
>cd02989 Phd_like_TxnDC9 Phosducin (Phd)-like family, Thioredoxin (TRX) domain containing protein 9 (TxnDC9) subfamily; composed of predominantly uncharacterized eukaryotic proteins, containing a TRX-like domain without the redox active CXXC motif. The gene name for the human protein is TxnDC9. The two characterized members are described as Phd-like proteins, PLP1 of Saccharomyces cerevisiae and PhLP3 of Dictyostelium discoideum. Gene disruption experiments show that both PLP1 and PhLP3 are non-essential proteins. Unlike Phd and most Phd-like proteins, members of this group do not contain the Phd N-terminal helical domain which is implicated in binding to the G protein betagamma subunit.
Probab=74.93 E-value=13 Score=25.40 Aligned_cols=61 Identities=16% Similarity=0.053 Sum_probs=37.1
Q ss_pred eEEecccCChhhhHHHHHHHhhCC---CeeEEEcCCCCChhHHHhhCCCCCcccEEEe--CCeeeehh
Q 027524 4 VKLHGGLLSPFNYRVVCALKLKGI---PFELIKEDLSNKSALLLKYNPVHKKIPVLVH--GGKPVCES 66 (222)
Q Consensus 4 ~~L~~~~~s~~~~~v~~~l~~~gi---~~~~~~v~~~~~~~~~~~~~p~~g~vP~L~~--~g~~l~es 66 (222)
+..++.++|+.|+.+.-.++...- ......+|.+... +..+.... ..+|++.. +|..+...
T Consensus 26 vV~f~a~~c~~C~~~~p~l~~la~~~~~i~f~~Vd~~~~~-~l~~~~~v-~~vPt~l~fk~G~~v~~~ 91 (113)
T cd02989 26 VCHFYHPEFFRCKIMDKHLEILAKKHLETKFIKVNAEKAP-FLVEKLNI-KVLPTVILFKNGKTVDRI 91 (113)
T ss_pred EEEEECCCCccHHHHHHHHHHHHHHcCCCEEEEEEcccCH-HHHHHCCC-ccCCEEEEEECCEEEEEE
Confidence 345677899999987766654221 2355666655433 34444444 58998873 78766543
No 178
>cd02975 PfPDO_like_N Pyrococcus furiosus protein disulfide oxidoreductase (PfPDO)-like family, N-terminal TRX-fold subdomain; composed of proteins with similarity to PfPDO, a redox active thermostable protein believed to be the archaeal counterpart of bacterial DsbA and eukaryotic protein disulfide isomerase (PDI), which are both involved in oxidative protein folding. PfPDO contains two redox active CXXC motifs in two contiguous TRX-fold subdomains. The active site in the N-terminal TRX-fold subdomain is required for isomerase but not for reductase activity of PfPDO. The exclusive presence of PfPDO-like proteins in extremophiles may suggest that they have a special role in adaptation to extreme conditions.
Probab=72.39 E-value=11 Score=25.59 Aligned_cols=53 Identities=9% Similarity=0.005 Sum_probs=32.2
Q ss_pred eEEe-cccCChhhhHHHHHHHhhCCC---eeEEEcCCCCChhHHHhhCCCCCcccEEEe
Q 027524 4 VKLH-GGLLSPFNYRVVCALKLKGIP---FELIKEDLSNKSALLLKYNPVHKKIPVLVH 58 (222)
Q Consensus 4 ~~L~-~~~~s~~~~~v~~~l~~~gi~---~~~~~v~~~~~~~~~~~~~p~~g~vP~L~~ 58 (222)
+.++ +.++||+|+.+.-+++...-. .+...++.+. .+++...-.. ..+|++..
T Consensus 25 vvv~f~a~wC~~C~~~~~~l~~la~~~~~i~~~~vd~d~-~~~l~~~~~v-~~vPt~~i 81 (113)
T cd02975 25 LVVFSSKEGCQYCEVTKQLLEELSELSDKLKLEIYDFDE-DKEKAEKYGV-ERVPTTIF 81 (113)
T ss_pred EEEEeCCCCCCChHHHHHHHHHHHHhcCceEEEEEeCCc-CHHHHHHcCC-CcCCEEEE
Confidence 4444 557999999887777654432 2444455443 3344444444 58998874
No 179
>PHA02278 thioredoxin-like protein
Probab=72.24 E-value=27 Score=23.46 Aligned_cols=58 Identities=14% Similarity=0.090 Sum_probs=31.6
Q ss_pred EEecccCChhhhHHHHHHHhh----CCCeeEEEcCCCCC---hhHHHhhCCCCCcccEEEe--CCeee
Q 027524 5 KLHGGLLSPFNYRVVCALKLK----GIPFELIKEDLSNK---SALLLKYNPVHKKIPVLVH--GGKPV 63 (222)
Q Consensus 5 ~L~~~~~s~~~~~v~~~l~~~----gi~~~~~~v~~~~~---~~~~~~~~p~~g~vP~L~~--~g~~l 63 (222)
.-++.+||+.|+...=.++.. +.......++.+.. .+++....-. ..+|++.. +|..+
T Consensus 19 V~F~A~WCgpCk~m~p~l~~l~~~~~~~~~~~~vdvd~~~~d~~~l~~~~~I-~~iPT~i~fk~G~~v 85 (103)
T PHA02278 19 VMITQDNCGKCEILKSVIPMFQESGDIKKPILTLNLDAEDVDREKAVKLFDI-MSTPVLIGYKDGQLV 85 (103)
T ss_pred EEEECCCCHHHHhHHHHHHHHHhhhcCCceEEEEECCccccccHHHHHHCCC-ccccEEEEEECCEEE
Confidence 345668999999766544433 22223444444422 2334333333 57998874 77655
No 180
>cd02949 TRX_NTR TRX domain, novel NADPH thioredoxin reductase (NTR) family; composed of fusion proteins found only in oxygenic photosynthetic organisms containing both TRX and NTR domains. The TRX domain functions as a protein disulfide reductase via the reversible oxidation of an active center dithiol present in a CXXC motif, while the NTR domain functions as a reductant to oxidized TRX. The fusion protein is bifunctional, showing both TRX and NTR activities, but it is not an independent NTR/TRX system. In plants, the protein is found exclusively in shoots and mature leaves and is localized in the chloroplast. It is involved in plant protection against oxidative stress.
Probab=72.02 E-value=24 Score=22.94 Aligned_cols=58 Identities=9% Similarity=-0.001 Sum_probs=34.1
Q ss_pred eEEecccCChhhhHHHHHHHh----hCCCeeEEEcCCCCChhHHHhhCCCCCcccEEE--eCCeee
Q 027524 4 VKLHGGLLSPFNYRVVCALKL----KGIPFELIKEDLSNKSALLLKYNPVHKKIPVLV--HGGKPV 63 (222)
Q Consensus 4 ~~L~~~~~s~~~~~v~~~l~~----~gi~~~~~~v~~~~~~~~~~~~~p~~g~vP~L~--~~g~~l 63 (222)
+.+|+.++|+.|+...-.++. .+-.+....+|.+... ++....-. ..+|++. .+|..+
T Consensus 17 lv~f~a~~C~~C~~~~~~l~~l~~~~~~~v~~~~id~d~~~-~l~~~~~v-~~vPt~~i~~~g~~v 80 (97)
T cd02949 17 LVLYTSPTCGPCRTLKPILNKVIDEFDGAVHFVEIDIDEDQ-EIAEAAGI-MGTPTVQFFKDKELV 80 (97)
T ss_pred EEEEECCCChhHHHHHHHHHHHHHHhCCceEEEEEECCCCH-HHHHHCCC-eeccEEEEEECCeEE
Confidence 456777899999987766644 2213455566655433 33333233 4799776 366554
No 181
>cd02953 DsbDgamma DsbD gamma family; DsbD gamma is the C-terminal periplasmic domain of the bacterial protein DsbD. It contains a CXXC motif in a TRX fold and shuttles the reducing potential from the membrane domain (DsbD beta) to the N-terminal periplasmic domain (DsbD alpha). DsbD beta, a transmembrane domain comprising of eight helices, acquires its reducing potential from the cytoplasmic thioredoxin. DsbD alpha transfers the acquired reducing potential from DsbD gamma to target proteins such as the periplasmic protein disulphide isomerases, DsbC and DsbG. This flow of reducing potential from the cytoplasm through DsbD allows DsbC and DsbG to act as isomerases in the oxidizing environment of the bacterial periplasm. DsbD also transfers reducing potential from the cytoplasm to specific reductases in the periplasm which are involved in the maturation of cytochromes.
Probab=69.53 E-value=22 Score=23.43 Aligned_cols=52 Identities=17% Similarity=0.016 Sum_probs=30.2
Q ss_pred eEEecccCChhhhHHHHHH--------HhhCCCeeEEEcCCCCC---hhHHHhhCCCCCcccEEE
Q 027524 4 VKLHGGLLSPFNYRVVCAL--------KLKGIPFELIKEDLSNK---SALLLKYNPVHKKIPVLV 57 (222)
Q Consensus 4 ~~L~~~~~s~~~~~v~~~l--------~~~gi~~~~~~v~~~~~---~~~~~~~~p~~g~vP~L~ 57 (222)
+..|+.++|++|+...-.+ .+.+ .+....+|.... ..++...... ..+|++.
T Consensus 15 lv~f~a~wC~~C~~~~~~~~~~~~~~~~~~~-~~~~~~vd~~~~~~~~~~~~~~~~i-~~~Pti~ 77 (104)
T cd02953 15 FVDFTADWCVTCKVNEKVVFSDPEVQAALKK-DVVLLRADWTKNDPEITALLKRFGV-FGPPTYL 77 (104)
T ss_pred EEEEEcchhHHHHHHHHHhcCCHHHHHHHhC-CeEEEEEecCCCCHHHHHHHHHcCC-CCCCEEE
Confidence 4567778999999875332 2232 456556665421 2344444444 5799776
No 182
>cd02963 TRX_DnaJ TRX domain, DnaJ domain containing protein family; composed of uncharacterized proteins of about 500-800 amino acids, containing an N-terminal DnaJ domain followed by one redox active TRX domain. DnaJ is a member of the 40 kDa heat-shock protein (Hsp40) family of molecular chaperones, which regulate the activity of Hsp70s. TRX is involved in the redox regulation of many protein substrates through the reduction of disulfide bonds. TRX has been implicated to catalyse the reduction of Hsp33, a chaperone holdase that binds to unfolded protein intermediates. The presence of DnaJ and TRX domains in members of this family suggests that they could be involved in a redox-regulated chaperone network.
Probab=69.05 E-value=31 Score=23.21 Aligned_cols=57 Identities=9% Similarity=0.044 Sum_probs=31.6
Q ss_pred eEEecccCChhhhHHHHHH-----HhhCCCeeEEEcCCCCChhHHHhhCCCCCcccEEE--eCCee
Q 027524 4 VKLHGGLLSPFNYRVVCAL-----KLKGIPFELIKEDLSNKSALLLKYNPVHKKIPVLV--HGGKP 62 (222)
Q Consensus 4 ~~L~~~~~s~~~~~v~~~l-----~~~gi~~~~~~v~~~~~~~~~~~~~p~~g~vP~L~--~~g~~ 62 (222)
+..++.++|+.|+...-.+ ++.|.......++.+... ........ ..+|++. .+|..
T Consensus 28 lV~F~a~wC~~C~~~~p~~~~l~~~~~~~~v~~~~vd~d~~~-~l~~~~~V-~~~Pt~~i~~~g~~ 91 (111)
T cd02963 28 LIKITSDWCFSCIHIEPVWKEVIQELEPLGVGIATVNAGHER-RLARKLGA-HSVPAIVGIINGQV 91 (111)
T ss_pred EEEEECCccHhHHHhhHHHHHHHHHHHhcCceEEEEeccccH-HHHHHcCC-ccCCEEEEEECCEE
Confidence 3456778999998654333 233334455556554322 33333333 5899887 36654
No 183
>cd02951 SoxW SoxW family; SoxW is a bacterial periplasmic TRX, containing a redox active CXXC motif, encoded by a genetic locus (sox operon) involved in thiosulfate oxidation. Sulfur bacteria oxidize sulfur compounds to provide reducing equivalents for carbon dioxide fixation during autotrophic growth and the respiratory electron transport chain. It is unclear what the role of SoxW is, since it has been found to be dispensable in the oxidation of thiosulfate to sulfate. SoxW is specifically kept in the reduced state by SoxV, which is essential in thiosulfate oxidation.
Probab=67.98 E-value=29 Score=23.74 Aligned_cols=16 Identities=13% Similarity=0.154 Sum_probs=12.4
Q ss_pred eEEecccCChhhhHHH
Q 027524 4 VKLHGGLLSPFNYRVV 19 (222)
Q Consensus 4 ~~L~~~~~s~~~~~v~ 19 (222)
+..++.++|++|++..
T Consensus 18 lv~f~a~wC~~C~~~~ 33 (125)
T cd02951 18 LLLFSQPGCPYCDKLK 33 (125)
T ss_pred EEEEeCCCCHHHHHHH
Confidence 4566778999999865
No 184
>PHA03075 glutaredoxin-like protein; Provisional
Probab=65.87 E-value=11 Score=26.08 Aligned_cols=68 Identities=13% Similarity=0.190 Sum_probs=48.6
Q ss_pred Cc-ceEEecccCChhhhHHHHHHHhhCCCeeEEEcCCCCChhHHHhhCCCCCcccEEEeCC-eeeehhHHHHHHHHhhC
Q 027524 1 MA-EVKLHGGLLSPFNYRVVCALKLKGIPFELIKEDLSNKSALLLKYNPVHKKIPVLVHGG-KPVCESMVILEYIEETW 77 (222)
Q Consensus 1 M~-~~~L~~~~~s~~~~~v~~~l~~~gi~~~~~~v~~~~~~~~~~~~~p~~g~vP~L~~~g-~~l~es~aI~~yL~~~~ 77 (222)
|. ++.|+|=|.|+-|..+.-+|....=+|+...|+.-+ |.. - .|++-+|..++ ..+ -..|.+||...+
T Consensus 1 mK~tLILfGKP~C~vCe~~s~~l~~ledeY~ilrVNIlS----fFs--K-~g~v~~lg~d~~y~l--Inn~~~~lgne~ 70 (123)
T PHA03075 1 MKKTLILFGKPLCSVCESISEALKELEDEYDILRVNILS----FFS--K-DGQVKVLGMDKGYTL--INNFFKHLGNEY 70 (123)
T ss_pred CCceEEEeCCcccHHHHHHHHHHHHhhccccEEEEEeee----eec--c-CCceEEEecccceeh--HHHHHHhhcccE
Confidence 56 689999999999999999999999999999997642 111 1 26777777643 221 234667776543
No 185
>PTZ00051 thioredoxin; Provisional
Probab=65.08 E-value=34 Score=22.02 Aligned_cols=58 Identities=10% Similarity=0.027 Sum_probs=32.6
Q ss_pred eEEecccCChhhhHHHHHHHhh---CCCeeEEEcCCCCChhHHHhhCCCCCcccEEEe--CCeee
Q 027524 4 VKLHGGLLSPFNYRVVCALKLK---GIPFELIKEDLSNKSALLLKYNPVHKKIPVLVH--GGKPV 63 (222)
Q Consensus 4 ~~L~~~~~s~~~~~v~~~l~~~---gi~~~~~~v~~~~~~~~~~~~~p~~g~vP~L~~--~g~~l 63 (222)
+..++.++|+.|+...-.++.. ...+....++.... ..+...... ..+|++.. +|..+
T Consensus 22 li~f~~~~C~~C~~~~~~l~~l~~~~~~~~~~~vd~~~~-~~~~~~~~v-~~~Pt~~~~~~g~~~ 84 (98)
T PTZ00051 22 IVDFYAEWCGPCKRIAPFYEECSKEYTKMVFVKVDVDEL-SEVAEKENI-TSMPTFKVFKNGSVV 84 (98)
T ss_pred EEEEECCCCHHHHHHhHHHHHHHHHcCCcEEEEEECcch-HHHHHHCCC-ceeeEEEEEeCCeEE
Confidence 4466788999999776555442 12244445554432 333333333 57998763 66543
No 186
>PRK09381 trxA thioredoxin; Provisional
Probab=63.28 E-value=41 Score=22.27 Aligned_cols=58 Identities=14% Similarity=0.072 Sum_probs=33.4
Q ss_pred eEEecccCChhhhHHHHHHHh----hCCCeeEEEcCCCCChhHHHhhCCCCCcccEEE--eCCeee
Q 027524 4 VKLHGGLLSPFNYRVVCALKL----KGIPFELIKEDLSNKSALLLKYNPVHKKIPVLV--HGGKPV 63 (222)
Q Consensus 4 ~~L~~~~~s~~~~~v~~~l~~----~gi~~~~~~v~~~~~~~~~~~~~p~~g~vP~L~--~~g~~l 63 (222)
+..++.++||.|+...-.++. .+-.+....++...........+. ..+|++. .+|..+
T Consensus 25 vv~f~~~~C~~C~~~~p~~~~l~~~~~~~~~~~~vd~~~~~~~~~~~~v--~~~Pt~~~~~~G~~~ 88 (109)
T PRK09381 25 LVDFWAEWCGPCKMIAPILDEIADEYQGKLTVAKLNIDQNPGTAPKYGI--RGIPTLLLFKNGEVA 88 (109)
T ss_pred EEEEECCCCHHHHHHhHHHHHHHHHhCCCcEEEEEECCCChhHHHhCCC--CcCCEEEEEeCCeEE
Confidence 345667899999977544432 222355566666543333334444 5799886 367654
No 187
>cd02947 TRX_family TRX family; composed of two groups: Group I, which includes proteins that exclusively encode a TRX domain; and Group II, which are composed of fusion proteins of TRX and additional domains. Group I TRX is a small ancient protein that alter the redox state of target proteins via the reversible oxidation of an active site dithiol, present in a CXXC motif, partially exposed at the protein's surface. TRX reduces protein disulfide bonds, resulting in a disulfide bond at its active site. Oxidized TRX is converted to the active form by TRX reductase, using reducing equivalents derived from either NADPH or ferredoxins. By altering their redox state, TRX regulates the functions of at least 30 target proteins, some of which are enzymes and transcription factors. It also plays an important role in the defense against oxidative stress by directly reducing hydrogen peroxide and certain radicals, and by serving as a reductant for peroxiredoxins. At least two major types of functio
Probab=63.25 E-value=33 Score=21.17 Aligned_cols=54 Identities=19% Similarity=0.146 Sum_probs=33.3
Q ss_pred eEEecccCChhhhHHHHHHHh-----hCCCeeEEEcCCCCChhHHHhhCCCCCcccEEEe--CCe
Q 027524 4 VKLHGGLLSPFNYRVVCALKL-----KGIPFELIKEDLSNKSALLLKYNPVHKKIPVLVH--GGK 61 (222)
Q Consensus 4 ~~L~~~~~s~~~~~v~~~l~~-----~gi~~~~~~v~~~~~~~~~~~~~p~~g~vP~L~~--~g~ 61 (222)
+.+++.++|++|+...-.++. .++.+-.+.++ . ...+...... ..+|++.. +|.
T Consensus 14 ll~~~~~~C~~C~~~~~~~~~~~~~~~~~~~~~i~~~--~-~~~~~~~~~v-~~~P~~~~~~~g~ 74 (93)
T cd02947 14 VVDFWAPWCGPCKAIAPVLEELAEEYPKVKFVKVDVD--E-NPELAEEYGV-RSIPTFLFFKNGK 74 (93)
T ss_pred EEEEECCCChhHHHhhHHHHHHHHHCCCceEEEEECC--C-ChhHHHhcCc-ccccEEEEEECCE
Confidence 556778899999988877776 55555544443 2 2223333333 47998763 565
No 188
>TIGR02187 GlrX_arch Glutaredoxin-like domain protein. This family of archaeal proteins contains a C-terminal domain with homology to bacterial and eukaryotic glutaredoxins, including a CPYC motif. There is an N-terminal domain which has even more distant homology to glutaredoxins. The name "glutaredoxin" may be inappropriate in the sense of working in tandem with glutathione and glutathione reductase which may not be present in the archaea. The overall domain structure appears to be related to bacterial alkylhydroperoxide reductases, but the homology may be distant enough that the function of this family is wholly different.
Probab=62.90 E-value=41 Score=25.76 Aligned_cols=58 Identities=14% Similarity=0.118 Sum_probs=35.1
Q ss_pred ceEEecc---cCChhhhHHHHHHHhh-----CCCeeEEEcCCCCChhHHHhhCCCCCcccEEEe--CCee
Q 027524 3 EVKLHGG---LLSPFNYRVVCALKLK-----GIPFELIKEDLSNKSALLLKYNPVHKKIPVLVH--GGKP 62 (222)
Q Consensus 3 ~~~L~~~---~~s~~~~~v~~~l~~~-----gi~~~~~~v~~~~~~~~~~~~~p~~g~vP~L~~--~g~~ 62 (222)
++.+|.. +|||.|..+.=.++.. ++.+..+.+|.+.. .+.....-. ..+|++.. +|..
T Consensus 22 ~i~~f~~~~a~wC~~C~~~~p~l~~la~~~~~~~i~~v~vd~~~~-~~l~~~~~V-~~~Pt~~~f~~g~~ 89 (215)
T TIGR02187 22 EIVVFTDNDKEGCQYCKETEQLLEELSEVSPKLKLEIYDFDTPED-KEEAEKYGV-ERVPTTIILEEGKD 89 (215)
T ss_pred EEEEEcCCCCCCCCchHHHHHHHHHHHhhCCCceEEEEecCCccc-HHHHHHcCC-CccCEEEEEeCCee
Confidence 3667777 8999999877777655 24444555554432 333333333 57998874 5543
No 189
>cd02959 ERp19 Endoplasmic reticulum protein 19 (ERp19) family; ERp19 is also known as ERp18, a protein located in the ER containing one redox active TRX domain. Denaturation studies indicate that the reduced form is more stable than the oxidized form, suggesting that the protein is involved in disulfide bond formation. In vitro, ERp19 has been shown to possess thiol-disulfide oxidase activity which is dependent on the presence of both active site cysteines. Although described as protein disulfide isomerase (PDI)-like, the protein does not complement for PDI activity. ERp19 shows a wide tissue distribution but is most abundant in liver, testis, heart and kidney.
Probab=60.48 E-value=49 Score=22.63 Aligned_cols=61 Identities=11% Similarity=0.037 Sum_probs=32.5
Q ss_pred eEEecccCChhhhHHHHHHHh------hCCCeeEEEcCCCCChhHHHhhCCCCCcccEEEe---CCeeeeh
Q 027524 4 VKLHGGLLSPFNYRVVCALKL------KGIPFELIKEDLSNKSALLLKYNPVHKKIPVLVH---GGKPVCE 65 (222)
Q Consensus 4 ~~L~~~~~s~~~~~v~~~l~~------~gi~~~~~~v~~~~~~~~~~~~~p~~g~vP~L~~---~g~~l~e 65 (222)
+..++.++|++|+...-.+.. .+..|-.+.++.... +.-...+..++.+|++.. +|..+..
T Consensus 23 lV~F~a~WC~~C~~~~~~~~~~~~~~~~~~~fv~v~vd~~~~-~~~~~~~~~g~~vPt~~f~~~~Gk~~~~ 92 (117)
T cd02959 23 MLLIHKTWCGACKALKPKFAESKEISELSHNFVMVNLEDDEE-PKDEEFSPDGGYIPRILFLDPSGDVHPE 92 (117)
T ss_pred EEEEeCCcCHHHHHHHHHHhhhHHHHhhcCcEEEEEecCCCC-chhhhcccCCCccceEEEECCCCCCchh
Confidence 344567899999977554444 223444444443321 111234554235998762 6666543
No 190
>KOG1668 consensus Elongation factor 1 beta/delta chain [Transcription]
Probab=59.78 E-value=3.4 Score=32.05 Aligned_cols=59 Identities=14% Similarity=0.211 Sum_probs=43.8
Q ss_pred HHHHHHHHhcccCCCCccccCCCChhHHHHHHHHHHHHHHHHhhcccccCCCCCchHHHHHHHhcccchhh
Q 027524 125 LEMLQIVEEHGLGEKKFFHGDKIGLVDIAFGSIVHWLQIIEDIVGVKLFESHKFPGLHAWLKNYKQVPVVE 195 (222)
Q Consensus 125 ~~~l~~l~e~~L~~~~~l~G~~~s~AD~~l~~~l~~~~~~~~~~~~~~~~~~~~p~l~~w~~~~~~~p~~~ 195 (222)
...+..+ +..|.+.+|.-|.++|-+|+.++..+.-- . ....+++..+|+..+.+.-.+.
T Consensus 10 ~~glk~l-~~sLA~ks~~~g~~~s~edv~vf~al~~e----------p-~s~~~v~~~~w~~~l~a~~~~~ 68 (231)
T KOG1668|consen 10 PAGLKKL-NKSLAEKSYIEGYQLSKEDVVVFAALGVE----------P-QSARLVNAERWYSKLEALLRLL 68 (231)
T ss_pred hhhhhhh-hHhhhcccCCCCCCcccccceeehhcccC----------c-chhhhhHHHHHHHHHHHHHHHH
Confidence 4568889 99999999999999999999887754221 1 1336778888888887755444
No 191
>cd02957 Phd_like Phosducin (Phd)-like family; composed of Phd and Phd-like proteins (PhLP), characterized as cytosolic regulators of G protein functions. Phd and PhLPs specifically bind G protein betagamma (Gbg)-subunits with high affinity, resulting in the solubilization of Gbg from the plasma membrane and impeding G protein-mediated signal transduction by inhibiting the formation of a functional G protein trimer (G protein alphabetagamma). Phd also inhibits the GTPase activity of G protein alpha. Phd can be phosphorylated by protein kinase A and G protein-coupled receptor kinase 2, leading to its inactivation. Phd was originally isolated from the retina, where it is highly expressed and has been implicated to play an important role in light adaptation. It is also found in the pineal gland, liver, spleen, striated muscle and the brain. The C-terminal domain of Phd adopts a thioredoxin fold, but it does not contain a CXXC motif. Phd interacts with G protein beta mostly through the N-te
Probab=58.95 E-value=32 Score=23.23 Aligned_cols=64 Identities=16% Similarity=0.109 Sum_probs=35.8
Q ss_pred EEecccCChhhhHHHHHHHhhCC---CeeEEEcCCCCChhHHHhhCCCCCcccEEEe--CCeeeehhHHHHH
Q 027524 5 KLHGGLLSPFNYRVVCALKLKGI---PFELIKEDLSNKSALLLKYNPVHKKIPVLVH--GGKPVCESMVILE 71 (222)
Q Consensus 5 ~L~~~~~s~~~~~v~~~l~~~gi---~~~~~~v~~~~~~~~~~~~~p~~g~vP~L~~--~g~~l~es~aI~~ 71 (222)
..++.++|+.|+.+.=.++...- ...+..+|.... .+....-. ..+|++.. +|..+....-...
T Consensus 29 v~F~a~~c~~C~~l~~~l~~la~~~~~v~f~~vd~~~~--~l~~~~~i-~~~Pt~~~f~~G~~v~~~~G~~~ 97 (113)
T cd02957 29 VHFYEPGFPRCKILDSHLEELAAKYPETKFVKINAEKA--FLVNYLDI-KVLPTLLVYKNGELIDNIVGFEE 97 (113)
T ss_pred EEEeCCCCCcHHHHHHHHHHHHHHCCCcEEEEEEchhh--HHHHhcCC-CcCCEEEEEECCEEEEEEecHHH
Confidence 45677899999977655543221 123445554432 43333333 58998873 7877654443333
No 192
>cd03003 PDI_a_ERdj5_N PDIa family, N-terminal ERdj5 subfamily; ERdj5, also known as JPDI and macrothioredoxin, is a protein containing an N-terminal DnaJ domain and four redox active TRX domains. This subfamily is comprised of the first TRX domain of ERdj5 located after the DnaJ domain at the N-terminal half of the protein. ERdj5 is a ubiquitous protein localized in the endoplasmic reticulum (ER) and is abundant in secretory cells. It's transcription is induced during ER stress. It interacts with BiP through its DnaJ domain in an ATP-dependent manner. BiP, an ER-resident member of the Hsp70 chaperone family, functions in ER-associated degradation and protein translocation.
Probab=57.52 E-value=51 Score=21.47 Aligned_cols=56 Identities=9% Similarity=-0.030 Sum_probs=31.8
Q ss_pred eEEecccCChhhhHHHHHHHhhCC----CeeEEEcCCCCChhHHHhhCCCCCcccEEEe--CCe
Q 027524 4 VKLHGGLLSPFNYRVVCALKLKGI----PFELIKEDLSNKSALLLKYNPVHKKIPVLVH--GGK 61 (222)
Q Consensus 4 ~~L~~~~~s~~~~~v~~~l~~~gi----~~~~~~v~~~~~~~~~~~~~p~~g~vP~L~~--~g~ 61 (222)
+..++.++|+.|+...-.++...- .+.+..++.+.... +....-. ..+|++.. +|.
T Consensus 22 ~v~f~a~wC~~C~~~~p~~~~~a~~~~~~~~~~~vd~~~~~~-~~~~~~v-~~~Pt~~~~~~g~ 83 (101)
T cd03003 22 FVNFYSPRCSHCHDLAPTWREFAKEMDGVIRIGAVNCGDDRM-LCRSQGV-NSYPSLYVFPSGM 83 (101)
T ss_pred EEEEECCCChHHHHhHHHHHHHHHHhcCceEEEEEeCCccHH-HHHHcCC-CccCEEEEEcCCC
Confidence 445677899999866554433221 24556666664333 3333333 57998863 554
No 193
>cd02948 TRX_NDPK TRX domain, TRX and NDP-kinase (NDPK) fusion protein family; most members of this group are fusion proteins which contain one redox active TRX domain containing a CXXC motif and three NDPK domains, and are characterized as intermediate chains (ICs) of axonemal outer arm dynein. Dyneins are molecular motors that generate force against microtubules to produce cellular movement, and are divided into two classes: axonemal and cytoplasmic. They are supramolecular complexes consisting of three protein groups classified according to size: dynein heavy, intermediate and light chains. Axonemal dyneins form two structures, the inner and outer arms, which are attached to doublet microtubules throughout the cilia and flagella. The human homolog is the sperm-specific Sptrx-2, presumed to be a component of the human sperm axoneme architecture. Included in this group is another human protein, TRX-like protein 2, a smaller fusion protein containing one TRX and one NDPK domain, which
Probab=57.19 E-value=53 Score=21.60 Aligned_cols=57 Identities=19% Similarity=0.016 Sum_probs=30.7
Q ss_pred eEEecccCChhhhHHHHHHHhh----C-CCeeEEEcCCCCChhHHHhhCCCCCcccEEEe--CCeee
Q 027524 4 VKLHGGLLSPFNYRVVCALKLK----G-IPFELIKEDLSNKSALLLKYNPVHKKIPVLVH--GGKPV 63 (222)
Q Consensus 4 ~~L~~~~~s~~~~~v~~~l~~~----g-i~~~~~~v~~~~~~~~~~~~~p~~g~vP~L~~--~g~~l 63 (222)
+..++.+||+.|+...-.++.. + -...+..++.+ . .+.....-. ..+|++.. +|..+
T Consensus 21 vv~F~a~wC~~Ck~~~p~l~~~~~~~~~~~~~~~~vd~d-~-~~~~~~~~v-~~~Pt~~~~~~g~~~ 84 (102)
T cd02948 21 VVDVYQEWCGPCKAVVSLFKKIKNELGDDLLHFATAEAD-T-IDTLKRYRG-KCEPTFLFYKNGELV 84 (102)
T ss_pred EEEEECCcCHhHHHHhHHHHHHHHHcCCCcEEEEEEeCC-C-HHHHHHcCC-CcCcEEEEEECCEEE
Confidence 3456778999999765444322 2 12344455544 2 233333333 57997763 67544
No 194
>TIGR02681 phage_pRha phage regulatory protein, rha family. Members of this protein family are found in temperate phage and bacterial prophage regions. Members include the product of the rha gene of the lambdoid phage phi-80, a late operon gene. The presence of this gene interferes with infection of bacterial strains that lack integration host factor (IHF), which regulates the rha gene. It is suggested that pRha is a phage regulatory protein.
Probab=54.20 E-value=14 Score=25.23 Aligned_cols=26 Identities=12% Similarity=0.279 Sum_probs=21.4
Q ss_pred ccEEE-eCCeeeehhHHHHHHHHhhCC
Q 027524 53 IPVLV-HGGKPVCESMVILEYIEETWP 78 (222)
Q Consensus 53 vP~L~-~~g~~l~es~aI~~yL~~~~~ 78 (222)
+|.+. .+|.+++.|..|+++++.++.
T Consensus 2 ~~~v~~~~~~~~ttS~~IAe~fgK~H~ 28 (108)
T TIGR02681 2 FPKVFTKRNQVVTDSLTMAQMFGKRHD 28 (108)
T ss_pred CceEEEECCEEEEeHHHHHHHHCcchH
Confidence 46555 699999999999999988764
No 195
>KOG2824 consensus Glutaredoxin-related protein [Posttranslational modification, protein turnover, chaperones]
Probab=53.74 E-value=32 Score=27.59 Aligned_cols=57 Identities=9% Similarity=0.022 Sum_probs=43.7
Q ss_pred hhhHHHHHHHhhCCCeeEEEcCCC-CChhHHHhhC----CCCCcccEEEeCCeeeehhHHHHH
Q 027524 14 FNYRVVCALKLKGIPFELIKEDLS-NKSALLLKYN----PVHKKIPVLVHGGKPVCESMVILE 71 (222)
Q Consensus 14 ~~~~v~~~l~~~gi~~~~~~v~~~-~~~~~~~~~~----p~~g~vP~L~~~g~~l~es~aI~~ 71 (222)
-|..||.+|+-.+|-|+...|.++ ...+++..+- -. -.+|.+..+|.-|...--|.+
T Consensus 149 ~C~~VR~ilesf~V~v~ERDVSMd~~fr~EL~~~lg~~~~~-~~LPrVFV~GryIGgaeeV~~ 210 (281)
T KOG2824|consen 149 DCNAVRAILESFRVKVDERDVSMDSEFREELQELLGEDEKA-VSLPRVFVKGRYIGGAEEVVR 210 (281)
T ss_pred HHHHHHHHHHhCceEEEEecccccHHHHHHHHHHHhccccc-CccCeEEEccEEeccHHHhhh
Confidence 578999999999999999999987 4555554331 12 479988889988887777665
No 196
>PRK10996 thioredoxin 2; Provisional
Probab=53.55 E-value=77 Score=22.36 Aligned_cols=58 Identities=12% Similarity=0.101 Sum_probs=34.8
Q ss_pred eEEecccCChhhhHHHHHHHh----hCCCeeEEEcCCCCChhHHHhhCCCCCcccEEEe--CCeee
Q 027524 4 VKLHGGLLSPFNYRVVCALKL----KGIPFELIKEDLSNKSALLLKYNPVHKKIPVLVH--GGKPV 63 (222)
Q Consensus 4 ~~L~~~~~s~~~~~v~~~l~~----~gi~~~~~~v~~~~~~~~~~~~~p~~g~vP~L~~--~g~~l 63 (222)
+..++.++|+.|+...-.+.. .+-.+....+|......-....+- ..+|++.. +|..+
T Consensus 56 vv~F~a~wC~~C~~~~~~l~~l~~~~~~~v~~~~vd~~~~~~l~~~~~V--~~~Ptlii~~~G~~v 119 (139)
T PRK10996 56 VIDFWAPWCGPCRNFAPIFEDVAAERSGKVRFVKVNTEAERELSARFRI--RSIPTIMIFKNGQVV 119 (139)
T ss_pred EEEEECCCCHHHHHHHHHHHHHHHHhCCCeEEEEEeCCCCHHHHHhcCC--CccCEEEEEECCEEE
Confidence 446677899999975444433 233466666776654443344444 47998873 67654
No 197
>cd02962 TMX2 TMX2 family; composed of proteins similar to human TMX2, a 372-amino acid TRX-related transmembrane protein, identified and characterized through the cloning of its cDNA from a human fetal library. It contains a TRX domain but the redox active CXXC motif is replaced with SXXC. Sequence analysis predicts that TMX2 may be a Type I membrane protein, with its C-terminal half protruding on the luminal side of the endoplasmic reticulum (ER). In addition to the TRX domain, transmembrane region and ER-retention signal, TMX2 also contains a Myb DNA-binding domain repeat signature and a dileucine motif in the tail.
Probab=52.81 E-value=85 Score=22.77 Aligned_cols=62 Identities=18% Similarity=0.204 Sum_probs=34.8
Q ss_pred eEEecccCChhhhHHHHHHHh-----hCCCeeEEEcCCCCChhHHHhhCCCC----CcccEEE--eCCeeeeh
Q 027524 4 VKLHGGLLSPFNYRVVCALKL-----KGIPFELIKEDLSNKSALLLKYNPVH----KKIPVLV--HGGKPVCE 65 (222)
Q Consensus 4 ~~L~~~~~s~~~~~v~~~l~~-----~gi~~~~~~v~~~~~~~~~~~~~p~~----g~vP~L~--~~g~~l~e 65 (222)
+..|+.++|+.|+...-.++. .+-.+.+..||.+...+--.+.+-.. +++|++. .+|..+..
T Consensus 51 vV~Fya~wC~~Ck~l~p~l~~la~~~~~~~v~f~~VDvd~~~~la~~~~V~~~~~v~~~PT~ilf~~Gk~v~r 123 (152)
T cd02962 51 LVEFFTTWSPECVNFAPVFAELSLKYNNNNLKFGKIDIGRFPNVAEKFRVSTSPLSKQLPTIILFQGGKEVAR 123 (152)
T ss_pred EEEEECCCCHHHHHHHHHHHHHHHHcccCCeEEEEEECCCCHHHHHHcCceecCCcCCCCEEEEEECCEEEEE
Confidence 456677899999976644433 22345666677654332222223210 2389887 47877653
No 198
>cd02993 PDI_a_APS_reductase PDIa family, 5'-Adenylylsulfate (APS) reductase subfamily; composed of plant-type APS reductases containing a C-terminal redox active TRX domain and an N-terminal reductase domain which is part of a superfamily that includes N type ATP PPases. APS reductase catalyzes the reduction of activated sulfate to sulfite, a key step in the biosynthesis of sulfur-containing metabolites. Sulfate is first activated by ATP sulfurylase, forming APS, which can be phosphorylated to 3'-phosphoadenosine-5'-phosphosulfate (PAPS). Depending on the organism, either APS or PAPS can be used for sulfate reduction. Prokaryotes and fungi use PAPS, whereas plants use both APS and PAPS. Since plant-type APS reductase uses glutathione (GSH) as its electron donor, the C-terminal domain may function like glutaredoxin, a GSH-dependent member of the TRX superfamily. The flow of reducing equivalents goes from GSH - C-terminal TRX domain - N-terminal reductase domain - APS. Plant-type APS red
Probab=51.50 E-value=70 Score=21.28 Aligned_cols=53 Identities=11% Similarity=0.148 Sum_probs=30.2
Q ss_pred eEEecccCChhhhHHHHHHHh-----hCCCeeEEEcCCCCChhHHH-hhCCCCCcccEEE
Q 027524 4 VKLHGGLLSPFNYRVVCALKL-----KGIPFELIKEDLSNKSALLL-KYNPVHKKIPVLV 57 (222)
Q Consensus 4 ~~L~~~~~s~~~~~v~~~l~~-----~gi~~~~~~v~~~~~~~~~~-~~~p~~g~vP~L~ 57 (222)
+..++.++||.|+...-.++. .+-.+....++.+.....+. ..... ..+|++.
T Consensus 25 lv~f~a~wC~~C~~~~~~~~~la~~~~~~~~~~~~vd~d~~~~~~~~~~~~v-~~~Pti~ 83 (109)
T cd02993 25 LVVLYAPWCPFCQAMEASYEELAEKLAGSNVKVAKFNADGEQREFAKEELQL-KSFPTIL 83 (109)
T ss_pred EEEEECCCCHHHHHHhHHHHHHHHHhccCCeEEEEEECCccchhhHHhhcCC-CcCCEEE
Confidence 566788999999976544433 33345555555543222222 22344 5799886
No 199
>PF01323 DSBA: DSBA-like thioredoxin domain; InterPro: IPR001853 DSBA is a sub-family of the Thioredoxin family []. The efficient and correct folding of bacterial disulphide bonded proteins in vivo is dependent upon a class of periplasmic oxidoreductase proteins called DsbA, after the Escherichia coli enzyme. The bacterial protein-folding factor DsbA is the most oxidizing of the thioredoxin family. DsbA catalyses disulphide-bond formation during the folding of secreted proteins. The extremely oxidizing nature of DsbA has been proposed to result from either domain motion or stabilising active-site interactions in the reduced form. DsbA's highly oxidizing nature is a result of hydrogen bond, electrostatic and helix-dipole interactions that favour the thiolate over the disulphide at the active site []. In the pathogenic bacterium Vibrio cholerae, the DsbA homologue (TcpG) is responsible for the folding, maturation and secretion of virulence factors. While the overall architecture of TcpG and DsbA is similar and the surface features are retained in TcpG, there are significant differences. For example, the kinked active site helix results from a three-residue loop in DsbA, but is caused by a proline in TcpG (making TcpG more similar to thioredoxin in this respect). Furthermore, the proposed peptide binding groove of TcpG is substantially shortened compared with that of DsbA due to a six-residue deletion. Also, the hydrophobic pocket of TcpG is more shallow and the acidic patch is much less extensive than that of E. coli DsbA [].; GO: 0015035 protein disulfide oxidoreductase activity; PDB: 3GL5_A 3DKS_D 3RPP_C 3RPN_B 1YZX_A 3L9V_C 2IMD_A 2IME_A 2IMF_A 2B3S_B ....
Probab=51.01 E-value=30 Score=25.55 Aligned_cols=36 Identities=11% Similarity=0.089 Sum_probs=27.1
Q ss_pred ceEEecccCChhhhHH----HHHHHhh-CCCeeEEEcCCCC
Q 027524 3 EVKLHGGLLSPFNYRV----VCALKLK-GIPFELIKEDLSN 38 (222)
Q Consensus 3 ~~~L~~~~~s~~~~~v----~~~l~~~-gi~~~~~~v~~~~ 38 (222)
++++|+...||||... +-+++.. ++.++..++.+..
T Consensus 1 ~i~~~~D~~Cp~cy~~~~~l~~l~~~~~~~~i~~~p~~l~~ 41 (193)
T PF01323_consen 1 TIEFFFDFICPWCYLASPRLRKLRAEYPDVEIEWRPFPLRP 41 (193)
T ss_dssp EEEEEEBTTBHHHHHHHHHHHHHHHHHTTCEEEEEEESSST
T ss_pred CEEEEEeCCCHHHHHHHHHHHHHHHHhcCCcEEEecccccc
Confidence 4789999999999844 4445555 8888888887654
No 200
>PF10022 DUF2264: Uncharacterized protein conserved in bacteria (DUF2264); InterPro: IPR016624 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=50.15 E-value=21 Score=29.98 Aligned_cols=108 Identities=14% Similarity=0.074 Sum_probs=66.3
Q ss_pred ccEEEeCCeeeehhHHHHHHHHhhCCCCCCC-CCCHHHHHHHHHHHHHHhhh-cc-hhhhhhcC-------HHHHHHHHH
Q 027524 53 IPVLVHGGKPVCESMVILEYIEETWPQNPLM-PSDPYDRAQARFWINFAENK-GA-AVWKLFRS-------IEDQENTMK 122 (222)
Q Consensus 53 vP~L~~~g~~l~es~aI~~yL~~~~~~~~l~-p~~~~~~a~~~~~~~~~~~~-~~-~~~~~~~~-------~~~~~~~~~ 122 (222)
.+-+.+.++.+.|+.+|+.-|...-. .++ |-+..+|.++..|+.-+++. .+ .-+.++.. ..-.+....
T Consensus 98 w~~~~~~dQ~~VEaa~la~aL~~a~~--~lW~~L~~~~k~~l~~wL~~~~~~~~~~nNW~lF~v~v~~~L~~~G~~~d~~ 175 (361)
T PF10022_consen 98 WGFIGDYDQRLVEAASLALALLRAPE--WLWDPLDEEEKENLVDWLKQIRGIKPPDNNWLLFRVMVEAFLKKVGEEYDEE 175 (361)
T ss_pred cCCcccchhhHhHHHHHHHHHHHCHH--HHHhhCCHHHHHHHHHHHHhcCcCCCccchhHHHHHHHHHHHHHcCCCCcHH
Confidence 34445567999999999998877532 143 67888999999988877665 11 11111110 000011136
Q ss_pred HHHHHHHHHHhcccCCCCccccCCCChhHHHHHHHHHHHHH
Q 027524 123 EILEMLQIVEEHGLGEKKFFHGDKIGLVDIAFGSIVHWLQI 163 (222)
Q Consensus 123 ~~~~~l~~l~e~~L~~~~~l~G~~~s~AD~~l~~~l~~~~~ 163 (222)
.+...++.+ |++-.+.+|..-..-.-.|.+..-.++....
T Consensus 176 ~i~~~l~~~-e~~Y~GdGWY~DG~~~~~DYYns~aih~y~l 215 (361)
T PF10022_consen 176 RIDYDLERI-EEWYLGDGWYSDGPEFQFDYYNSWAIHPYLL 215 (361)
T ss_pred HHHHHHHHH-HHHhccCCccccCCccCCcchHHHHHHHHHH
Confidence 677788888 6666666677433345668887776766643
No 201
>PRK13947 shikimate kinase; Provisional
Probab=49.66 E-value=25 Score=25.51 Aligned_cols=31 Identities=13% Similarity=-0.110 Sum_probs=28.1
Q ss_pred CcceEEecccCChhhhHHHHHHHhhCCCeeE
Q 027524 1 MAEVKLHGGLLSPFNYRVVCALKLKGIPFEL 31 (222)
Q Consensus 1 M~~~~L~~~~~s~~~~~v~~~l~~~gi~~~~ 31 (222)
|.++.|.|.++|+-+...+.+.+..|++|-.
T Consensus 1 m~~I~l~G~~GsGKst~a~~La~~lg~~~id 31 (171)
T PRK13947 1 MKNIVLIGFMGTGKTTVGKRVATTLSFGFID 31 (171)
T ss_pred CCeEEEEcCCCCCHHHHHHHHHHHhCCCEEE
Confidence 7789999999999999999999999998743
No 202
>cd02987 Phd_like_Phd Phosducin (Phd)-like family, Phd subfamily; Phd is a cytosolic regulator of G protein functions. It specifically binds G protein betagamma (Gbg)-subunits with high affinity, resulting in the solubilization of Gbg from the plasma membrane. This impedes the formation of a functional G protein trimer (G protein alphabetagamma), thereby inhibiting G protein-mediated signal transduction. Phd also inhibits the GTPase activity of G protein alpha. Phd can be phosphorylated by protein kinase A and G protein-coupled receptor kinase 2, leading to its inactivation. Phd was originally isolated from the retina, where it is highly expressed and has been implicated to play an important role in light adaptation. It is also found in the pineal gland, liver, spleen, striated muscle and the brain. The C-terminal domain of Phd adopts a thioredoxin fold, but it does not contain a CXXC motif. Phd interacts with G protein beta mostly through the N-terminal helical domain.
Probab=48.87 E-value=1.1e+02 Score=22.74 Aligned_cols=61 Identities=13% Similarity=-0.021 Sum_probs=34.7
Q ss_pred EecccCChhhhHHHHHHHhhC---CCeeEEEcCCCCChhHHHhhCCCCCcccEEEe--CCeeeehhHHH
Q 027524 6 LHGGLLSPFNYRVVCALKLKG---IPFELIKEDLSNKSALLLKYNPVHKKIPVLVH--GGKPVCESMVI 69 (222)
Q Consensus 6 L~~~~~s~~~~~v~~~l~~~g---i~~~~~~v~~~~~~~~~~~~~p~~g~vP~L~~--~g~~l~es~aI 69 (222)
.++.++|+.|+.+-=.|+..- -.+.++.|+.... ......+. ..+|++.. +|..+..-.-.
T Consensus 89 ~Fya~wc~~Ck~m~~~l~~LA~~~~~vkF~kVd~d~~--~l~~~f~v-~~vPTlllyk~G~~v~~~vG~ 154 (175)
T cd02987 89 HIYEPGIPGCAALNSSLLCLAAEYPAVKFCKIRASAT--GASDEFDT-DALPALLVYKGGELIGNFVRV 154 (175)
T ss_pred EEECCCCchHHHHHHHHHHHHHHCCCeEEEEEeccch--hhHHhCCC-CCCCEEEEEECCEEEEEEech
Confidence 456688998986543332221 1345556655432 34444455 58998874 88776544333
No 203
>cd02996 PDI_a_ERp44 PDIa family, endoplasmic reticulum protein 44 (ERp44) subfamily; ERp44 is an ER-resident protein, induced during stress, involved in thiol-mediated ER retention. It contains an N-terminal TRX domain, similar to that of PDIa, with a CXFS motif followed by two redox inactive TRX-like domains, homologous to the b and b' domains of PDI. The CXFS motif in the N-terminal domain allows ERp44 to form stable reversible mixed disulfides with its substrates. Through this activity, ERp44 mediates the ER localization of Ero1alpha, a protein that oxidizes protein disulfide isomerases into their active form. ERp44 also prevents the secretion of unassembled cargo protein with unpaired cysteines. It also modulates the activity of inositol 1,4,5-triphosphate type I receptor (IP3R1), an intracellular channel protein that mediates calcium release from the ER to the cytosol.
Probab=48.44 E-value=69 Score=21.14 Aligned_cols=56 Identities=14% Similarity=0.035 Sum_probs=32.1
Q ss_pred eEEecccCChhhhHHHHHHHhhC------C----CeeEEEcCCCCChhHHHhhCCCCCcccEEEe--CCe
Q 027524 4 VKLHGGLLSPFNYRVVCALKLKG------I----PFELIKEDLSNKSALLLKYNPVHKKIPVLVH--GGK 61 (222)
Q Consensus 4 ~~L~~~~~s~~~~~v~~~l~~~g------i----~~~~~~v~~~~~~~~~~~~~p~~g~vP~L~~--~g~ 61 (222)
+..++.++|+.|+...-.++... . .+....+|.+... ++....-. ..+|++.. +|.
T Consensus 22 lv~F~a~wC~~C~~~~p~~~~~a~~~~~~~~~~~~~~~~~vd~d~~~-~l~~~~~v-~~~Ptl~~~~~g~ 89 (108)
T cd02996 22 LVNFYADWCRFSQMLHPIFEEAAAKIKEEFPDAGKVVWGKVDCDKES-DIADRYRI-NKYPTLKLFRNGM 89 (108)
T ss_pred EEEEECCCCHHHHhhHHHHHHHHHHHhhccCCCCcEEEEEEECCCCH-HHHHhCCC-CcCCEEEEEeCCc
Confidence 44667789999997765553221 1 2445556655433 33333333 57998873 565
No 204
>cd02954 DIM1 Dim1 family; Dim1 is also referred to as U5 small nuclear ribonucleoprotein particle (snRNP)-specific 15kD protein. It is a component of U5 snRNP, which pre-assembles with U4/U6 snRNPs to form a [U4/U6:U5] tri-snRNP complex required for pre-mRNA splicing. Dim1 interacts with multiple splicing-associated proteins, suggesting that it functions at multiple control points in the splicing of pre-mRNA as part of a large spliceosomal complex involving many protein-protein interactions. U5 snRNP contains seven core proteins (common to all snRNPs) and nine U5-specific proteins, one of which is Dim1. Dim1 adopts a thioredoxin fold but does not contain the redox active CXXC motif. It is essential for G2/M phase transition, as a consequence to its role in pre-mRNA splicing.
Probab=48.10 E-value=59 Score=22.38 Aligned_cols=56 Identities=13% Similarity=0.048 Sum_probs=32.8
Q ss_pred EecccCChhhhHHHHHHHhhCCC----eeEEEcCCCCChhHHHhhCCCCCcccEEEe--CCeee
Q 027524 6 LHGGLLSPFNYRVVCALKLKGIP----FELIKEDLSNKSALLLKYNPVHKKIPVLVH--GGKPV 63 (222)
Q Consensus 6 L~~~~~s~~~~~v~~~l~~~gi~----~~~~~v~~~~~~~~~~~~~p~~g~vP~L~~--~g~~l 63 (222)
-++-+|||.|+.+.=.++..--. ..+..||.+.. +++....-. ..+|++.. +|..+
T Consensus 20 ~F~A~WCgpCk~m~P~le~la~~~~~~v~f~kVDvD~~-~~la~~~~V-~~iPTf~~fk~G~~v 81 (114)
T cd02954 20 RFGRDWDPVCMQMDEVLAKIAEDVSNFAVIYLVDIDEV-PDFNKMYEL-YDPPTVMFFFRNKHM 81 (114)
T ss_pred EEECCCChhHHHHHHHHHHHHHHccCceEEEEEECCCC-HHHHHHcCC-CCCCEEEEEECCEEE
Confidence 35678999999776555443322 34455665543 344444333 47998873 77664
No 205
>TIGR01068 thioredoxin thioredoxin. Several proteins, such as protein disulfide isomerase, have two or more copies of a domain closely related to thioredoxin. This model is designed to recognize authentic thioredoxin, a small protein that should be hit exactly once by this model.
Probab=46.89 E-value=74 Score=20.21 Aligned_cols=56 Identities=16% Similarity=0.140 Sum_probs=31.7
Q ss_pred eEEecccCChhhhHHHHHHHh----hCCCeeEEEcCCCCChhHHHhhCCCCCcccEEEe--CCe
Q 027524 4 VKLHGGLLSPFNYRVVCALKL----KGIPFELIKEDLSNKSALLLKYNPVHKKIPVLVH--GGK 61 (222)
Q Consensus 4 ~~L~~~~~s~~~~~v~~~l~~----~gi~~~~~~v~~~~~~~~~~~~~p~~g~vP~L~~--~g~ 61 (222)
+..++.++|+.|+...-.++. .+-.+....+|...........+- ..+|++.. +|.
T Consensus 18 vi~f~~~~C~~C~~~~~~l~~~~~~~~~~~~~~~vd~~~~~~~~~~~~v--~~~P~~~~~~~g~ 79 (101)
T TIGR01068 18 LVDFWAPWCGPCKMIAPILEELAKEYEGKVKFVKLNVDENPDIAAKYGI--RSIPTLLLFKNGK 79 (101)
T ss_pred EEEEECCCCHHHHHhCHHHHHHHHHhcCCeEEEEEECCCCHHHHHHcCC--CcCCEEEEEeCCc
Confidence 345567889999877544433 232355566665543333334444 47998763 554
No 206
>PRK13949 shikimate kinase; Provisional
Probab=46.64 E-value=30 Score=25.48 Aligned_cols=31 Identities=19% Similarity=0.040 Sum_probs=27.6
Q ss_pred CcceEEecccCChhhhHHHHHHHhhCCCeeE
Q 027524 1 MAEVKLHGGLLSPFNYRVVCALKLKGIPFEL 31 (222)
Q Consensus 1 M~~~~L~~~~~s~~~~~v~~~l~~~gi~~~~ 31 (222)
|..+.|.|.++|+-+...+++.+..|+++-.
T Consensus 1 m~~I~liG~~GsGKstl~~~La~~l~~~~id 31 (169)
T PRK13949 1 MARIFLVGYMGAGKTTLGKALARELGLSFID 31 (169)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHcCCCeec
Confidence 7789999999999999999999999977544
No 207
>PF14595 Thioredoxin_9: Thioredoxin; PDB: 1Z6N_A.
Probab=45.50 E-value=15 Score=25.90 Aligned_cols=53 Identities=15% Similarity=0.100 Sum_probs=26.1
Q ss_pred eEEecccCChhhhHH----HHHHHhh-CCCeeEEEcCCC-CChhHHHhhCCCCCcccEEEe
Q 027524 4 VKLHGGLLSPFNYRV----VCALKLK-GIPFELIKEDLS-NKSALLLKYNPVHKKIPVLVH 58 (222)
Q Consensus 4 ~~L~~~~~s~~~~~v----~~~l~~~-gi~~~~~~v~~~-~~~~~~~~~~p~~g~vP~L~~ 58 (222)
+.++.-+|||.|++. .-+++.. +|+++....|-. ...+.|+. +-. .+||+++.
T Consensus 45 ilvi~e~WCgD~~~~vP~l~kiae~~p~i~~~~i~rd~~~el~~~~lt-~g~-~~IP~~I~ 103 (129)
T PF14595_consen 45 ILVITETWCGDCARNVPVLAKIAEANPNIEVRIILRDENKELMDQYLT-NGG-RSIPTFIF 103 (129)
T ss_dssp EEEE--TT-HHHHHHHHHHHHHHHH-TTEEEEEE-HHHHHHHTTTTTT--SS---SSEEEE
T ss_pred EEEEECCCchhHHHHHHHHHHHHHhCCCCeEEEEEecCChhHHHHHHh-CCC-eecCEEEE
Confidence 556677899999943 4445555 677766655321 22233334 333 58998873
No 208
>cd02997 PDI_a_PDIR PDIa family, PDIR subfamily; composed of proteins similar to human PDIR (for Protein Disulfide Isomerase Related). PDIR is composed of three redox active TRX (a) domains and an N-terminal redox inactive TRX-like (b) domain. Similar to PDI, it is involved in oxidative protein folding in the endoplasmic reticulum (ER) through its isomerase and chaperone activities. These activities are lower compared to PDI, probably due to PDIR acting only on a subset of proteins. PDIR is preferentially expressed in cells actively secreting proteins and its expression is induced by stress. Similar to PDI, the isomerase and chaperone activities of PDIR are independent; CXXC mutants lacking isomerase activity retain chaperone activity.
Probab=43.46 E-value=88 Score=20.12 Aligned_cols=57 Identities=14% Similarity=0.006 Sum_probs=29.6
Q ss_pred eEEecccCChhhhHHHHHH----HhhC--CCeeEEEcCCCC-ChhHHHhhCCCCCcccEEEe--CCe
Q 027524 4 VKLHGGLLSPFNYRVVCAL----KLKG--IPFELIKEDLSN-KSALLLKYNPVHKKIPVLVH--GGK 61 (222)
Q Consensus 4 ~~L~~~~~s~~~~~v~~~l----~~~g--i~~~~~~v~~~~-~~~~~~~~~p~~g~vP~L~~--~g~ 61 (222)
+.+++.++|+.|+...=.+ +... -.+....++... ....+...... ..+|++.. +|.
T Consensus 21 ~v~f~a~wC~~C~~~~~~~~~~~~~~~~~~~~~~~~id~~~~~~~~~~~~~~i-~~~Pt~~~~~~g~ 86 (104)
T cd02997 21 LVMFYAPWCGHCKKMKPEFTKAATELKEDGKGVLAAVDCTKPEHDALKEEYNV-KGFPTFKYFENGK 86 (104)
T ss_pred EEEEECCCCHHHHHhCHHHHHHHHHHhhCCceEEEEEECCCCccHHHHHhCCC-ccccEEEEEeCCC
Confidence 4567778999999774222 2221 223444444442 13333333333 47998863 454
No 209
>cd02956 ybbN ybbN protein family; ybbN is a hypothetical protein containing a redox-inactive TRX-like domain. Its gene has been sequenced from several gammaproteobacteria and actinobacteria.
Probab=43.16 E-value=87 Score=19.97 Aligned_cols=57 Identities=19% Similarity=0.173 Sum_probs=33.2
Q ss_pred eEEecccCChhhhHHHHHHHhhC----CCeeEEEcCCCCChhHHHhhCCCCCcccEEE--eCCee
Q 027524 4 VKLHGGLLSPFNYRVVCALKLKG----IPFELIKEDLSNKSALLLKYNPVHKKIPVLV--HGGKP 62 (222)
Q Consensus 4 ~~L~~~~~s~~~~~v~~~l~~~g----i~~~~~~v~~~~~~~~~~~~~p~~g~vP~L~--~~g~~ 62 (222)
+..++.++|+.|+...-.++... -.+....+|.+.. ..+...-.. ..+|++. .+|..
T Consensus 16 lv~f~a~wC~~C~~~~~~~~~~~~~~~~~~~~~~vd~~~~-~~l~~~~~i-~~~Pt~~~~~~g~~ 78 (96)
T cd02956 16 VVDFWAPRSPPSKELLPLLERLAEEYQGQFVLAKVNCDAQ-PQIAQQFGV-QALPTVYLFAAGQP 78 (96)
T ss_pred EEEEECCCChHHHHHHHHHHHHHHHhCCcEEEEEEeccCC-HHHHHHcCC-CCCCEEEEEeCCEE
Confidence 34556788999997765554322 2355566666543 333333333 5799887 46654
No 210
>cd02985 TRX_CDSP32 TRX family, chloroplastic drought-induced stress protein of 32 kD (CDSP32); CDSP32 is composed of two TRX domains, a C-terminal TRX domain which contains a redox active CXXC motif and an N-terminal TRX-like domain which contains an SXXS sequence instead of the redox active motif. CDSP32 is a stress-inducible TRX, i.e., it acts as a TRX by reducing protein disulfides and is induced by environmental and oxidative stress conditions. It plays a critical role in plastid defense against oxidative damage, a role related to its function as a physiological electron donor to BAS1, a plastidic 2-cys peroxiredoxin. Plants lacking CDSP32 exhibit decreased photosystem II photochemical efficiencies and chlorophyll retention compared to WT controls, as well as an increased proportion of BAS1 in its overoxidized monomeric form.
Probab=43.03 E-value=96 Score=20.40 Aligned_cols=58 Identities=7% Similarity=0.028 Sum_probs=31.1
Q ss_pred EEecccCChhhhHHHHHHHhhC---CCeeEEEcCCCCCh--hHHHhhCCCCCcccEEEe--CCeee
Q 027524 5 KLHGGLLSPFNYRVVCALKLKG---IPFELIKEDLSNKS--ALLLKYNPVHKKIPVLVH--GGKPV 63 (222)
Q Consensus 5 ~L~~~~~s~~~~~v~~~l~~~g---i~~~~~~v~~~~~~--~~~~~~~p~~g~vP~L~~--~g~~l 63 (222)
..++.+||+.|+...=.++... -...+..++.+... .++...... ..+|++.. +|..+
T Consensus 20 v~F~a~wC~~C~~~~p~l~~la~~~~~v~~~~vd~d~~~~~~~l~~~~~V-~~~Pt~~~~~~G~~v 84 (103)
T cd02985 20 LEFALKHSGPSVKIYPTMVKLSRTCNDVVFLLVNGDENDSTMELCRREKI-IEVPHFLFYKDGEKI 84 (103)
T ss_pred EEEECCCCHhHHHHhHHHHHHHHHCCCCEEEEEECCCChHHHHHHHHcCC-CcCCEEEEEeCCeEE
Confidence 4456678999986654443321 12344555544322 244444344 47998763 67654
No 211
>KOG0190 consensus Protein disulfide isomerase (prolyl 4-hydroxylase beta subunit) [Posttranslational modification, protein turnover, chaperones]
Probab=42.80 E-value=1.1e+02 Score=27.11 Aligned_cols=73 Identities=19% Similarity=0.180 Sum_probs=47.9
Q ss_pred eEEecccCChhhhH-------HHHHHHhhCCCeeEEEcCCCCChhHHHhhCCCCCcccEEEe--CCee------eehhHH
Q 027524 4 VKLHGGLLSPFNYR-------VVCALKLKGIPFELIKEDLSNKSALLLKYNPVHKKIPVLVH--GGKP------VCESMV 68 (222)
Q Consensus 4 ~~L~~~~~s~~~~~-------v~~~l~~~gi~~~~~~v~~~~~~~~~~~~~p~~g~vP~L~~--~g~~------l~es~a 68 (222)
+.-||-|||+.|.+ +.=.|...|=+.....||.... .++-...-. .-.|+|.. +|.. .-+...
T Consensus 46 lVeFYAPWCghck~LaPey~kAA~~Lke~~s~i~LakVDat~~-~~~~~~y~v-~gyPTlkiFrnG~~~~~Y~G~r~adg 123 (493)
T KOG0190|consen 46 LVEFYAPWCGHCKALAPEYEKAATELKEEGSPVKLAKVDATEE-SDLASKYEV-RGYPTLKIFRNGRSAQDYNGPREADG 123 (493)
T ss_pred EEEEEchhhhhhhhhCcHHHHHHHHhhccCCCceeEEeecchh-hhhHhhhcC-CCCCeEEEEecCCcceeccCcccHHH
Confidence 45667789888874 3344555566888888887643 223333333 46899984 6653 356678
Q ss_pred HHHHHHhhCC
Q 027524 69 ILEYIEETWP 78 (222)
Q Consensus 69 I~~yL~~~~~ 78 (222)
|+.||-++.+
T Consensus 124 Iv~wl~kq~g 133 (493)
T KOG0190|consen 124 IVKWLKKQSG 133 (493)
T ss_pred HHHHHHhccC
Confidence 9999998864
No 212
>cd02994 PDI_a_TMX PDIa family, TMX subfamily; composed of proteins similar to the TRX-related human transmembrane protein, TMX. TMX is a type I integral membrane protein; the N-terminal redox active TRX domain is present in the endoplasmic reticulum (ER) lumen while the C-terminus is oriented towards the cytoplasm. It is expressed in many cell types and its active site motif (CPAC) is unique. In vitro, TMX reduces interchain disulfides of insulin and renatures inactive RNase containing incorrect disulfide bonds. The C. elegans homolog, DPY-11, is expressed only in the hypodermis and resides in the cytoplasm. It is required for body and sensory organ morphogeneis. Another uncharacterized TRX-related transmembrane protein, human TMX4, is included in the alignment. The active site sequence of TMX4 is CPSC.
Probab=42.00 E-value=95 Score=20.06 Aligned_cols=53 Identities=13% Similarity=0.064 Sum_probs=30.1
Q ss_pred eEEecccCChhhhHHHHHHHhh-----CCCeeEEEcCCCCChhHHHhhCCCCCcccEEEe
Q 027524 4 VKLHGGLLSPFNYRVVCALKLK-----GIPFELIKEDLSNKSALLLKYNPVHKKIPVLVH 58 (222)
Q Consensus 4 ~~L~~~~~s~~~~~v~~~l~~~-----gi~~~~~~v~~~~~~~~~~~~~p~~g~vP~L~~ 58 (222)
+..++.++|+.|+...=.++.. +..+....+|..... .+...... ..+|++..
T Consensus 20 lv~f~a~wC~~C~~~~p~~~~l~~~~~~~~v~~~~vd~~~~~-~~~~~~~i-~~~Pt~~~ 77 (101)
T cd02994 20 MIEFYAPWCPACQQLQPEWEEFADWSDDLGINVAKVDVTQEP-GLSGRFFV-TALPTIYH 77 (101)
T ss_pred EEEEECCCCHHHHHHhHHHHHHHHhhccCCeEEEEEEccCCH-hHHHHcCC-cccCEEEE
Confidence 4556778999998765444322 334555566554333 33333333 57998873
No 213
>PF04134 DUF393: Protein of unknown function, DUF393; InterPro: IPR007263 The DCC family, named after the conserved N-terminal DxxCxxC motif, encompasses COG3011 from COG. Proteins in this family are predicted to have a thioredoxin-like fold which, together with the presence of an invariant catalytic cysteine residue, suggests that they are a novel group of thiol-disulphide oxidoreductases []. As some of the bacterial proteins are encoded near penicillin-binding proteins, it has been suggested that these may be involved in redox regulation of cell wall biosynthesis [].
Probab=41.95 E-value=1e+02 Score=20.68 Aligned_cols=70 Identities=14% Similarity=0.123 Sum_probs=39.6
Q ss_pred EecccCChhhhHHHHHHHhhCC--CeeEEEcCCCCChhHH---HhhCCCC-CcccEEEeCCe-eeehhHHHHHHHHhh
Q 027524 6 LHGGLLSPFNYRVVCALKLKGI--PFELIKEDLSNKSALL---LKYNPVH-KKIPVLVHGGK-PVCESMVILEYIEET 76 (222)
Q Consensus 6 L~~~~~s~~~~~v~~~l~~~gi--~~~~~~v~~~~~~~~~---~~~~p~~-g~vP~L~~~g~-~l~es~aI~~yL~~~ 76 (222)
|+|...||+|....-.+.-..- .++.+.+.... ..+. ..+++.. -+.-.+..+|. ...++.|+.+-+...
T Consensus 1 v~YDg~C~lC~~~~~~l~~~d~~~~l~~~~~~~~~-~~~~~~~~~~~~~~~~~~l~~~~~g~~~~~G~~A~~~l~~~~ 77 (114)
T PF04134_consen 1 VFYDGDCPLCRREVRFLRRRDRGGRLRFVDIQSEP-DQALLASYGISPEDADSRLHLIDDGERVYRGSDAVLRLLRRL 77 (114)
T ss_pred CEECCCCHhHHHHHHHHHhcCCCCCEEEEECCChh-hhhHHHhcCcCHHHHcCeeEEecCCCEEEEcHHHHHHHHHHc
Confidence 4667889999988888877765 34444442111 1111 1111100 12333345665 999999998875553
No 214
>KOG3425 consensus Uncharacterized conserved protein [Function unknown]
Probab=41.26 E-value=86 Score=21.92 Aligned_cols=68 Identities=15% Similarity=0.075 Sum_probs=39.4
Q ss_pred ccCChhhhHH----HHHHHhhCCCeeEEEcCCCCChhHHHhhCCC-----C-CcccEEEe-C--CeeeehhHHHHHHHHh
Q 027524 9 GLLSPFNYRV----VCALKLKGIPFELIKEDLSNKSALLLKYNPV-----H-KKIPVLVH-G--GKPVCESMVILEYIEE 75 (222)
Q Consensus 9 ~~~s~~~~~v----~~~l~~~gi~~~~~~v~~~~~~~~~~~~~p~-----~-g~vP~L~~-~--g~~l~es~aI~~yL~~ 75 (222)
-+|||.|.++ +=++++++.+..++.++..+++.|--..||+ . --||+|.. + +..+.+...-...|.+
T Consensus 42 qSWCPdCV~AEPvi~~alk~ap~~~~~v~v~VG~rp~Wk~p~n~FR~d~~~lt~vPTLlrw~~~~~rL~~~q~~~~~Lve 121 (128)
T KOG3425|consen 42 QSWCPDCVAAEPVINEALKHAPEDVHFVHVYVGNRPYWKDPANPFRKDPGILTAVPTLLRWKRQPQRLDGLQCLNDHLVE 121 (128)
T ss_pred CcCCchHHHhhHHHHHHHHhCCCceEEEEEEecCCCcccCCCCccccCCCceeecceeeEEcCccccchHhHhhHHHHHH
Confidence 3689999864 4556666777777766655444443333333 0 24888873 3 4556666555555554
Q ss_pred h
Q 027524 76 T 76 (222)
Q Consensus 76 ~ 76 (222)
.
T Consensus 122 ~ 122 (128)
T KOG3425|consen 122 M 122 (128)
T ss_pred H
Confidence 3
No 215
>cd03006 PDI_a_EFP1_N PDIa family, N-terminal EFP1 subfamily; EFP1 is a binding partner protein of thyroid oxidase (ThOX), also called Duox. ThOX proteins are responsible for the generation of hydrogen peroxide, a crucial substrate of thyroperoxidase, which functions to iodinate thyroglobulin and synthesize thyroid hormones. EFP1 was isolated through a yeast two-hybrid method using the EF-hand fragment of dog Duox1 as a bait. It could be one of the partners in the assembly of a multiprotein complex constituting the thyroid hydrogen peroxide generating system. EFP1 contains two TRX domains related to the redox active TRX domains of protein disulfide isomerase (PDI). This subfamily is composed of the N-terminal TRX domain of EFP1, which contains a CXXS sequence in place of the typical CXXC motif, similar to ERp44. The CXXS motif allows the formation of stable mixed disulfides, crucial for the ER-retention function of ERp44.
Probab=41.15 E-value=60 Score=22.17 Aligned_cols=52 Identities=6% Similarity=-0.138 Sum_probs=30.5
Q ss_pred eEEecccCChhhhHHHHHHHhhCCC----eeEEEcCCCCChhHHH-hhCCCCCcccEEE
Q 027524 4 VKLHGGLLSPFNYRVVCALKLKGIP----FELIKEDLSNKSALLL-KYNPVHKKIPVLV 57 (222)
Q Consensus 4 ~~L~~~~~s~~~~~v~~~l~~~gi~----~~~~~v~~~~~~~~~~-~~~p~~g~vP~L~ 57 (222)
+..++-+||+.|+...-.++...-. ..+..||.+... ... ...-. ..+|++.
T Consensus 33 lV~FyA~WC~~Ck~l~p~~~~la~~~~~~v~~~~Vd~d~~~-~l~~~~~~I-~~~PTl~ 89 (113)
T cd03006 33 LVMYYAPWDAQSQAARQEFEQVAQKLSDQVLFVAINCWWPQ-GKCRKQKHF-FYFPVIH 89 (113)
T ss_pred EEEEECCCCHHHHHHHHHHHHHHHHhcCCeEEEEEECCCCh-HHHHHhcCC-cccCEEE
Confidence 4466788999999876666654322 444566655322 232 22222 4799887
No 216
>cd02955 SSP411 TRX domain, SSP411 protein family; members of this family are highly conserved proteins present in eukaryotes, bacteria and archaea, about 600-800 amino acids in length, which contain a TRX domain with a redox active CXXC motif. The human/rat protein, called SSP411, is specifically expressed in the testis in an age-dependent manner. The SSP411 mRNA is increased during spermiogenesis and is localized in round and elongated spermatids, suggesting a function in fertility regulation.
Probab=40.70 E-value=1.2e+02 Score=21.04 Aligned_cols=60 Identities=15% Similarity=0.081 Sum_probs=35.6
Q ss_pred EecccCChhhhHHHH-------HHHhhCCCeeEEEcCCCCChhH---HHh----hCCCCCcccEEEe---CCeeeehh
Q 027524 6 LHGGLLSPFNYRVVC-------ALKLKGIPFELIKEDLSNKSAL---LLK----YNPVHKKIPVLVH---GGKPVCES 66 (222)
Q Consensus 6 L~~~~~s~~~~~v~~-------~l~~~gi~~~~~~v~~~~~~~~---~~~----~~p~~g~vP~L~~---~g~~l~es 66 (222)
.++..+|++|++.-- +.+...-.|..+.+|.+..++. +.+ ..-. +-+|+++. +|..+..+
T Consensus 21 ~f~a~WC~~Ck~me~~~f~~~~V~~~l~~~fv~VkvD~~~~~~~~~~~~~~~~~~~~~-~G~Pt~vfl~~~G~~~~~~ 97 (124)
T cd02955 21 SIGYSTCHWCHVMEHESFEDEEVAAILNENFVPIKVDREERPDVDKIYMNAAQAMTGQ-GGWPLNVFLTPDLKPFFGG 97 (124)
T ss_pred EEccCCCHhHHHHHHHccCCHHHHHHHhCCEEEEEEeCCcCcHHHHHHHHHHHHhcCC-CCCCEEEEECCCCCEEeee
Confidence 456788999997632 2223344688888887642221 111 1223 46897763 78888776
No 217
>PF06110 DUF953: Eukaryotic protein of unknown function (DUF953); InterPro: IPR010357 This family consists of several hypothetical eukaryotic proteins of unknown function that are thioredoxin-like.; PDB: 1V9W_A 1WOU_A.
Probab=39.90 E-value=33 Score=23.87 Aligned_cols=59 Identities=17% Similarity=0.215 Sum_probs=27.6
Q ss_pred cccCChhhhHHHHHHH----hhCCCeeEEEcCCCCChh------HHHhhCCCC--CcccEEEe--CCeeeehhH
Q 027524 8 GGLLSPFNYRVVCALK----LKGIPFELIKEDLSNKSA------LLLKYNPVH--KKIPVLVH--GGKPVCESM 67 (222)
Q Consensus 8 ~~~~s~~~~~v~~~l~----~~gi~~~~~~v~~~~~~~------~~~~~~p~~--g~vP~L~~--~g~~l~es~ 67 (222)
+-+|||.|..+.=.++ .+.-....+.+...++.. .|+. +|.. ..||+|.. ++..+.|..
T Consensus 34 g~sWCPDC~~aep~v~~~f~~~~~~~~lv~v~VG~r~~Wkdp~n~fR~-~p~~~l~~IPTLi~~~~~~rL~e~e 106 (119)
T PF06110_consen 34 GQSWCPDCVAAEPVVEKAFKKAPENARLVYVEVGDRPEWKDPNNPFRT-DPDLKLKGIPTLIRWETGERLVEEE 106 (119)
T ss_dssp S-BSSHHHHHHHHHHHHHHHH-STTEEEEEEE---HHHHC-TTSHHHH---CC---SSSEEEECTSS-EEEHHH
T ss_pred CCcccHHHHHHHHHHHHHHHhCCCCceEEEEEcCCHHHhCCCCCCceE-cceeeeeecceEEEECCCCccchhh
Confidence 3478999997764443 332345555444333222 2222 2210 36999984 456666653
No 218
>PF13728 TraF: F plasmid transfer operon protein
Probab=39.62 E-value=1.3e+02 Score=23.15 Aligned_cols=52 Identities=12% Similarity=0.003 Sum_probs=34.8
Q ss_pred eEEecccCChhhh----HHHHHHHhhCCCeeEEEcCCC---------CChhHHHhhCCCCCcccEEE
Q 027524 4 VKLHGGLLSPFNY----RVVCALKLKGIPFELIKEDLS---------NKSALLLKYNPVHKKIPVLV 57 (222)
Q Consensus 4 ~~L~~~~~s~~~~----~v~~~l~~~gi~~~~~~v~~~---------~~~~~~~~~~p~~g~vP~L~ 57 (222)
+.+++-+.||||+ .++.+....|+++-.+.+|-. ........++. ..+|+|.
T Consensus 124 L~~F~~~~C~~C~~~~pil~~~~~~yg~~v~~vs~DG~~~~~fp~~~~~~g~~~~l~v--~~~Pal~ 188 (215)
T PF13728_consen 124 LFFFYRSDCPYCQQQAPILQQFADKYGFSVIPVSLDGRPIPSFPNPRPDPGQAKRLGV--KVTPALF 188 (215)
T ss_pred EEEEEcCCCchhHHHHHHHHHHHHHhCCEEEEEecCCCCCcCCCCCCCCHHHHHHcCC--CcCCEEE
Confidence 4566778999998 566777778999888888622 11222334455 4799876
No 219
>cd02950 TxlA TRX-like protein A (TxlA) family; TxlA was originally isolated from the cyanobacterium Synechococcus. It is found only in oxygenic photosynthetic organisms. TRX is a small enzyme that participate in redox reactions, via the reversible oxidation of an active site dithiol present in a CXXC motif. Disruption of the txlA gene suggests that the protein is involved in the redox regulation of the structure and function of photosynthetic apparatus. The plant homolog (designated as HCF164) is localized in the chloroplast and is involved in the assembly of the cytochrome b6f complex, which takes a central position in photosynthetic electron transport.
Probab=38.92 E-value=1.4e+02 Score=21.15 Aligned_cols=59 Identities=12% Similarity=0.036 Sum_probs=30.0
Q ss_pred eEEecccCChhhhHHHHHHHh----hCCCeeEEEcCCCCC-hhHHHhhCCCCCcccEEE--e-CCeee
Q 027524 4 VKLHGGLLSPFNYRVVCALKL----KGIPFELIKEDLSNK-SALLLKYNPVHKKIPVLV--H-GGKPV 63 (222)
Q Consensus 4 ~~L~~~~~s~~~~~v~~~l~~----~gi~~~~~~v~~~~~-~~~~~~~~p~~g~vP~L~--~-~g~~l 63 (222)
+..|+.+||+.|+...=.++. .+-.+.++.++.+.. ...+....-. ..+|++. + +|..+
T Consensus 24 vV~F~A~WC~~C~~~~p~l~~l~~~~~~~~~~v~v~vd~~~~~~~~~~~~V-~~iPt~v~~~~~G~~v 90 (142)
T cd02950 24 LVEFYADWCTVCQEMAPDVAKLKQKYGDQVNFVMLNVDNPKWLPEIDRYRV-DGIPHFVFLDREGNEE 90 (142)
T ss_pred EEEEECCcCHHHHHhHHHHHHHHHHhccCeeEEEEEcCCcccHHHHHHcCC-CCCCEEEEECCCCCEE
Confidence 345566789999866544432 222244454444421 1223332333 4699776 2 46554
No 220
>cd03004 PDI_a_ERdj5_C PDIa family, C-terminal ERdj5 subfamily; ERdj5, also known as JPDI and macrothioredoxin, is a protein containing an N-terminal DnaJ domain and four redox active TRX domains. This subfamily is composed of the three TRX domains located at the C-terminal half of the protein. ERdj5 is a ubiquitous protein localized in the endoplasmic reticulum (ER) and is abundant in secretory cells. It's transcription is induced during ER stress. It interacts with BiP through its DnaJ domain in an ATP-dependent manner. BiP, an ER-resident member of the Hsp70 chaperone family, functions in ER-associated degradation and protein translocation. Also included in the alignment is the single complete TRX domain of an uncharacterized protein from Tetraodon nigroviridis, which also contains a DnaJ domain at its N-terminus.
Probab=37.40 E-value=89 Score=20.31 Aligned_cols=52 Identities=8% Similarity=-0.064 Sum_probs=29.3
Q ss_pred eEEecccCChhhhHHHHHHHhh----CCCeeEEEcCCCCChhHHHhhCCCCCcccEEE
Q 027524 4 VKLHGGLLSPFNYRVVCALKLK----GIPFELIKEDLSNKSALLLKYNPVHKKIPVLV 57 (222)
Q Consensus 4 ~~L~~~~~s~~~~~v~~~l~~~----gi~~~~~~v~~~~~~~~~~~~~p~~g~vP~L~ 57 (222)
+..|+.++|+.|+...=.++.. +-.+....+|.+.. .++...... ..+|++.
T Consensus 23 ~v~f~a~wC~~C~~~~p~~~~~~~~~~~~~~~~~vd~~~~-~~~~~~~~i-~~~Pt~~ 78 (104)
T cd03004 23 LVDFYAPWCGPCQALLPELRKAARALKGKVKVGSVDCQKY-ESLCQQANI-RAYPTIR 78 (104)
T ss_pred EEEEECCCCHHHHHHHHHHHHHHHHhcCCcEEEEEECCch-HHHHHHcCC-CcccEEE
Confidence 4466778999998764444332 21244555665543 333333333 5799887
No 221
>PF13098 Thioredoxin_2: Thioredoxin-like domain; PDB: 1T3B_A 2L57_A 1EEJ_B 1TJD_A 1JZD_B 1JZO_A 1G0T_B 3GV1_A 1V58_A 2H0H_A ....
Probab=35.95 E-value=29 Score=23.05 Aligned_cols=34 Identities=15% Similarity=0.139 Sum_probs=19.6
Q ss_pred eEEecccCChhhhHHHHHHHh---h----CCCeeEEEcCCC
Q 027524 4 VKLHGGLLSPFNYRVVCALKL---K----GIPFELIKEDLS 37 (222)
Q Consensus 4 ~~L~~~~~s~~~~~v~~~l~~---~----gi~~~~~~v~~~ 37 (222)
+.+++.++||||++..-.+.. . .-.+..+.++..
T Consensus 9 v~~F~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 49 (112)
T PF13098_consen 9 VVVFTDPWCPYCKKLEKELFPDNDVARYLKDDFQVIFVNID 49 (112)
T ss_dssp EEEEE-TT-HHHHHHHHHHHHHHHHHCEEHCECEEEECESH
T ss_pred EEEEECCCCHHHHHHHHHHHHHHHHHHHhhcCeEEEEEecC
Confidence 556778899999987555542 1 113555666554
No 222
>TIGR01764 excise DNA binding domain, excisionase family. An excisionase, or Xis protein, is a small protein that binds and promotes excisive recombination; it is not enzymatically active. This model represents a number of putative excisionases and related proteins from temperate phage, plasmids, and transposons, as well as DNA binding domains of other proteins, such as a DNA modification methylase. This model identifies mostly small proteins and N-terminal regions of large proteins, but some proteins appear to have two copies. This domain appears similar, in both sequence and predicted secondary structure (PSIPRED) to the MerR family of transcriptional regulators (pfam00376).
Probab=35.70 E-value=61 Score=17.52 Aligned_cols=25 Identities=20% Similarity=0.263 Sum_probs=20.4
Q ss_pred CcccEEEeCCeeeehhHHHHHHHHh
Q 027524 51 KKIPVLVHGGKPVCESMVILEYIEE 75 (222)
Q Consensus 51 g~vP~L~~~g~~l~es~aI~~yL~~ 75 (222)
|.+|....++..+.....|.+|+.+
T Consensus 25 g~i~~~~~g~~~~~~~~~l~~~~~~ 49 (49)
T TIGR01764 25 GELPAYRVGRHYRIPREDVDEYLEQ 49 (49)
T ss_pred CCCCeEEeCCeEEEeHHHHHHHHhC
Confidence 6889887788888888888888753
No 223
>PRK09266 hypothetical protein; Provisional
Probab=35.13 E-value=79 Score=25.11 Aligned_cols=58 Identities=19% Similarity=0.194 Sum_probs=39.8
Q ss_pred HHHhhCCCeeEEEcCCC--CChhHHHhhCCCCCcccEEEeCCeeeehhHHHHHHHHhhCC
Q 027524 21 ALKLKGIPFELIKEDLS--NKSALLLKYNPVHKKIPVLVHGGKPVCESMVILEYIEETWP 78 (222)
Q Consensus 21 ~l~~~gi~~~~~~v~~~--~~~~~~~~~~p~~g~vP~L~~~g~~l~es~aI~~yL~~~~~ 78 (222)
.+...|++++...++.. ...++..-.|...|-+|+-..|+..+.....|.+.|.+.|.
T Consensus 200 ~~~~~g~~v~e~~i~~~eL~~adevfltnSl~gi~pV~~i~~~~~~~~~~~~~~l~~~~~ 259 (266)
T PRK09266 200 GLERLGIPQRTRPVTLADLGRFAGAFACNAWRGQRAVSAIDDVALPDSHALLELLRRAYE 259 (266)
T ss_pred HHHHcCCeeEEEECCHHHHHHhhHhhhhcCccceEEEEEECCEECCCCchHHHHHHHHHH
Confidence 45566999999888765 22233333455448899999988887655678887777653
No 224
>PTZ00102 disulphide isomerase; Provisional
Probab=35.01 E-value=2.8e+02 Score=23.95 Aligned_cols=73 Identities=16% Similarity=0.145 Sum_probs=43.0
Q ss_pred eEEecccCChhhhHHHHHH-------HhhCCCeeEEEcCCCCChhHHHhhCCCCCcccEEEe--CCeee-----ehhHHH
Q 027524 4 VKLHGGLLSPFNYRVVCAL-------KLKGIPFELIKEDLSNKSALLLKYNPVHKKIPVLVH--GGKPV-----CESMVI 69 (222)
Q Consensus 4 ~~L~~~~~s~~~~~v~~~l-------~~~gi~~~~~~v~~~~~~~~~~~~~p~~g~vP~L~~--~g~~l-----~es~aI 69 (222)
+..++.+||++|++..=.+ ...+-++....+|......-..+.+- ..+|++.. +|..+ .....|
T Consensus 53 lv~f~a~wC~~Ck~~~p~~~~~a~~~~~~~~~i~~~~vd~~~~~~l~~~~~i--~~~Pt~~~~~~g~~~~y~g~~~~~~l 130 (477)
T PTZ00102 53 LVKFYAPWCGHCKRLAPEYKKAAKMLKEKKSEIVLASVDATEEMELAQEFGV--RGYPTIKFFNKGNPVNYSGGRTADGI 130 (477)
T ss_pred EEEEECCCCHHHHHhhHHHHHHHHHHHhcCCcEEEEEEECCCCHHHHHhcCC--CcccEEEEEECCceEEecCCCCHHHH
Confidence 4567788999998664221 22234566667766543333333343 46998862 44332 245678
Q ss_pred HHHHHhhCC
Q 027524 70 LEYIEETWP 78 (222)
Q Consensus 70 ~~yL~~~~~ 78 (222)
.+|+.+..+
T Consensus 131 ~~~l~~~~~ 139 (477)
T PTZ00102 131 VSWIKKLTG 139 (477)
T ss_pred HHHHHHhhC
Confidence 899888753
No 225
>cd03005 PDI_a_ERp46 PDIa family, endoplasmic reticulum protein 46 (ERp46) subfamily; ERp46 is an ER-resident protein containing three redox active TRX domains. Yeast complementation studies show that ERp46 can substitute for protein disulfide isomerase (PDI) function in vivo. It has been detected in many tissues, however, transcript and protein levels do not correlate in all tissues, suggesting regulation at a posttranscriptional level. An identical protein, named endoPDI, has been identified as an endothelial PDI that is highly expressed in the endothelium of tumors and hypoxic lesions. It has a protective effect on cells exposed to hypoxia.
Probab=34.68 E-value=1.2e+02 Score=19.32 Aligned_cols=56 Identities=14% Similarity=0.162 Sum_probs=31.1
Q ss_pred eEEecccCChhhhHHHHHH-----HhhC--CCeeEEEcCCCCChhHHHhhCCCCCcccEEEe--CCe
Q 027524 4 VKLHGGLLSPFNYRVVCAL-----KLKG--IPFELIKEDLSNKSALLLKYNPVHKKIPVLVH--GGK 61 (222)
Q Consensus 4 ~~L~~~~~s~~~~~v~~~l-----~~~g--i~~~~~~v~~~~~~~~~~~~~p~~g~vP~L~~--~g~ 61 (222)
+..++.++|+.|+...=.+ +..+ -.+....+|...........+. ..+|++.. +|.
T Consensus 20 lv~f~a~wC~~C~~~~p~~~~~~~~~~~~~~~~~~~~vd~~~~~~~~~~~~v--~~~Pt~~~~~~g~ 84 (102)
T cd03005 20 FVKFFAPWCGHCKRLAPTWEQLAKKFNNENPSVKIAKVDCTQHRELCSEFQV--RGYPTLLLFKDGE 84 (102)
T ss_pred EEEEECCCCHHHHHhCHHHHHHHHHHhccCCcEEEEEEECCCChhhHhhcCC--CcCCEEEEEeCCC
Confidence 4456778999998654322 3333 2455666665543333333343 47998762 554
No 226
>cd03000 PDI_a_TMX3 PDIa family, TMX3 subfamily; composed of eukaryotic proteins similar to human TMX3, a TRX related transmembrane protein containing one redox active TRX domain at the N-terminus and a classical ER retrieval sequence for type I transmembrane proteins at the C-terminus. The TMX3 transcript is found in a variety of tissues with the highest levels detected in skeletal muscle and the heart. In vitro, TMX3 showed oxidase activity albeit slightly lower than that of protein disulfide isomerase.
Probab=34.27 E-value=1.3e+02 Score=19.56 Aligned_cols=52 Identities=12% Similarity=0.062 Sum_probs=28.6
Q ss_pred eEEecccCChhhhHHHHHHHh----h---CCCeeEEEcCCCCChhHHHhhCCCCCcccEEE
Q 027524 4 VKLHGGLLSPFNYRVVCALKL----K---GIPFELIKEDLSNKSALLLKYNPVHKKIPVLV 57 (222)
Q Consensus 4 ~~L~~~~~s~~~~~v~~~l~~----~---gi~~~~~~v~~~~~~~~~~~~~p~~g~vP~L~ 57 (222)
+..|+.++||.|+...-.++. . |..+....++......-....+. ..+|++.
T Consensus 19 lv~f~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~~~~vd~~~~~~~~~~~~I--~~~Pt~~ 77 (104)
T cd03000 19 LVDFYAPWCGHCKKLEPVWNEVGAELKSSGSPVRVGKLDATAYSSIASEFGV--RGYPTIK 77 (104)
T ss_pred EEEEECCCCHHHHhhChHHHHHHHHHHhcCCcEEEEEEECccCHhHHhhcCC--ccccEEE
Confidence 445677899999965533322 2 44455555555433322223344 4799886
No 227
>PF04564 U-box: U-box domain; InterPro: IPR003613 Quality control of intracellular proteins is essential for cellular homeostasis. Molecular chaperones recognise and contribute to the refolding of misfolded or unfolded proteins, whereas the ubiquitin-proteasome system mediates the degradation of such abnormal proteins. Ubiquitin-protein ligases (E3s) determine the substrate specificity for ubiquitylation and have been classified into HECT and RING-finger families. More recently, however, U-box proteins, which contain a domain (the U box) of about 70 amino acids that is conserved from yeast to humans, have been identified as a new type of E3 []. Members of the U-box family of proteins constitute a class of ubiquitin-protein ligases (E3s) distinct from the HECT-type and RING finger-containing E3 families []. Using yeast two-hybrid technology, all mammalian U-box proteins have been reported to interact with molecular chaperones or co-chaperones, including Hsp90, Hsp70, DnaJc7, EKN1, CRN, and VCP. This suggests that the function of U box-type E3s is to mediate the degradation of unfolded or misfolded proteins in conjunction with molecular chaperones as receptors that recognise such abnormal proteins [, ]. Unlike the RING finger domain, IPR001841 from INTERPRO, that is stabilised by Zn2+ ions coordinated by the cysteines and a histidine, the U-box scaffold is probably stabilised by a system of salt-bridges and hydrogen bonds. The charged and polar residues that participate in this network of bonds are more strongly conserved in the U-box proteins than in classic RING fingers, which supports their role in maintaining the stability of the U box. Thus, the U box appears to have evolved from a RING finger domain by appropriation of a new set of residues required to stabilise its structure, concomitant with the loss of the original, metal-chelating residues [].; GO: 0004842 ubiquitin-protein ligase activity, 0016567 protein ubiquitination, 0000151 ubiquitin ligase complex; PDB: 1T1H_A 2C2L_D 2C2V_V 1WGM_A 2KR4_A 3L1Z_B 3L1X_A 2KRE_A 3M63_A 2QIZ_A ....
Probab=34.17 E-value=1.2e+02 Score=18.80 Aligned_cols=25 Identities=24% Similarity=0.417 Sum_probs=21.2
Q ss_pred cccEEEeCCeeeehhHHHHHHHHhhC
Q 027524 52 KIPVLVHGGKPVCESMVILEYIEETW 77 (222)
Q Consensus 52 ~vP~L~~~g~~l~es~aI~~yL~~~~ 77 (222)
+=|++..+| ..+|-.+|.+||.+..
T Consensus 15 ~dPVi~~~G-~tyer~~I~~~l~~~~ 39 (73)
T PF04564_consen 15 RDPVILPSG-HTYERSAIERWLEQNG 39 (73)
T ss_dssp SSEEEETTS-EEEEHHHHHHHHCTTS
T ss_pred hCceeCCcC-CEEcHHHHHHHHHcCC
Confidence 568888888 7899999999999944
No 228
>PRK10877 protein disulfide isomerase II DsbC; Provisional
Probab=33.80 E-value=71 Score=24.95 Aligned_cols=22 Identities=5% Similarity=0.066 Sum_probs=17.6
Q ss_pred eEEecccCChhhhHHHHHHHhh
Q 027524 4 VKLHGGLLSPFNYRVVCALKLK 25 (222)
Q Consensus 4 ~~L~~~~~s~~~~~v~~~l~~~ 25 (222)
+.+|..+.||||++..=-+...
T Consensus 111 I~vFtDp~CpyCkkl~~~l~~~ 132 (232)
T PRK10877 111 ITVFTDITCGYCHKLHEQMKDY 132 (232)
T ss_pred EEEEECCCChHHHHHHHHHHHH
Confidence 6778889999999987666553
No 229
>cd03020 DsbA_DsbC_DsbG DsbA family, DsbC and DsbG subfamily; V-shaped homodimeric proteins containing a redox active CXXC motif imbedded in a TRX fold. They function as protein disulfide isomerases and chaperones in the bacterial periplasm to correct non-native disulfide bonds formed by DsbA and prevent aggregation of incorrectly folded proteins. DsbC and DsbG are kept in their reduced state by the cytoplasmic membrane protein DsbD, which utilizes the TRX/TRX reductase system in the cytosol as a source of reducing equivalents. DsbG differ from DsbC in that it has a more limited substrate specificity, and it may preferentially act later in the folding process to catalyze disulfide rearrangements in folded or partially folded proteins. Also included in the alignment is the predicted protein TrbB, whose gene was sequenced from the enterohemorrhagic E. coli type IV pilus gene cluster, which is required for efficient plasmid transfer.
Probab=33.34 E-value=63 Score=24.26 Aligned_cols=22 Identities=18% Similarity=0.119 Sum_probs=17.9
Q ss_pred ceEEecccCChhhhHHHHHHHh
Q 027524 3 EVKLHGGLLSPFNYRVVCALKL 24 (222)
Q Consensus 3 ~~~L~~~~~s~~~~~v~~~l~~ 24 (222)
.+.+|..+.||||++..-.+..
T Consensus 80 ~i~~f~D~~Cp~C~~~~~~l~~ 101 (197)
T cd03020 80 VVYVFTDPDCPYCRKLEKELKP 101 (197)
T ss_pred EEEEEECCCCccHHHHHHHHhh
Confidence 3667888899999999887764
No 230
>cd02952 TRP14_like Human TRX-related protein 14 (TRP14)-like family; composed of proteins similar to TRP14, a 14kD cytosolic protein that shows disulfide reductase activity in vitro with a different substrate specificity compared with another human cytosolic protein, TRX1. TRP14 catalyzes the reduction of small disulfide-containing peptides but does not reduce disulfides of ribonucleotide reductase, peroxiredoxin and methionine sulfoxide reductase, which are TRX1 substrates. TRP14 also plays a role in tumor necrosis factor (TNF)-alpha signaling pathways, distinct from that of TRX1. Its depletion promoted TNF-alpha induced activation of c-Jun N-terminal kinase and mitogen-activated protein kinases.
Probab=33.33 E-value=1.6e+02 Score=20.30 Aligned_cols=55 Identities=13% Similarity=0.097 Sum_probs=28.7
Q ss_pred cCChhhhHHHHHH----HhhCCCeeEEEcCCCC------ChhHHHhhCCCCC-cccEEEe--CCeeeeh
Q 027524 10 LLSPFNYRVVCAL----KLKGIPFELIKEDLSN------KSALLLKYNPVHK-KIPVLVH--GGKPVCE 65 (222)
Q Consensus 10 ~~s~~~~~v~~~l----~~~gi~~~~~~v~~~~------~~~~~~~~~p~~g-~vP~L~~--~g~~l~e 65 (222)
+|||.|+.+.-.+ +...-.+.++.|+.++ ...++...--. . .+|++.. +|..|.|
T Consensus 38 ~WC~pCr~~~P~l~~l~~~~~~~v~fv~Vdvd~~~~w~d~~~~~~~~~~I-~~~iPT~~~~~~~~~l~~ 105 (119)
T cd02952 38 SWCPDCVKAEPVVREALKAAPEDCVFIYCDVGDRPYWRDPNNPFRTDPKL-TTGVPTLLRWKTPQRLVE 105 (119)
T ss_pred CCCHhHHhhchhHHHHHHHCCCCCEEEEEEcCCcccccCcchhhHhccCc-ccCCCEEEEEcCCceecc
Confidence 6899999665433 3333234555555442 12344332222 3 6998873 4555444
No 231
>cd02999 PDI_a_ERp44_like PDIa family, endoplasmic reticulum protein 44 (ERp44)-like subfamily; composed of uncharacterized PDI-like eukaryotic proteins containing only one redox active TRX (a) domain with a CXXS motif, similar to ERp44. CXXS is still a redox active motif; however, the mixed disulfide formed with the substrate is more stable than those formed by CXXC motif proteins. PDI-related proteins are usually involved in the oxidative protein folding in the ER by acting as catalysts and folding assistants. ERp44 is involved in thiol-mediated retention in the ER.
Probab=32.78 E-value=1.1e+02 Score=20.15 Aligned_cols=53 Identities=15% Similarity=0.094 Sum_probs=28.1
Q ss_pred eEEecccCChhhhHHHHHHHhhCCC---eeEEEcCCCCChhHHHhhCCCCCcccEEE
Q 027524 4 VKLHGGLLSPFNYRVVCALKLKGIP---FELIKEDLSNKSALLLKYNPVHKKIPVLV 57 (222)
Q Consensus 4 ~~L~~~~~s~~~~~v~~~l~~~gi~---~~~~~v~~~~~~~~~~~~~p~~g~vP~L~ 57 (222)
+..++.+||+.|+...=.++...-. .....+|..+....+....-. ..+|++.
T Consensus 22 lV~F~a~WC~~C~~~~p~l~~la~~~~~~~~~~vd~~~~~~~l~~~~~V-~~~PT~~ 77 (100)
T cd02999 22 AVLFYASWCPFSASFRPHFNALSSMFPQIRHLAIEESSIKPSLLSRYGV-VGFPTIL 77 (100)
T ss_pred EEEEECCCCHHHHhHhHHHHHHHHHhccCceEEEECCCCCHHHHHhcCC-eecCEEE
Confidence 4456778999998776555432211 233444444222333333233 4799876
No 232
>KOG0912 consensus Thiol-disulfide isomerase and thioredoxin [Posttranslational modification, protein turnover, chaperones; Energy production and conversion]
Probab=32.37 E-value=47 Score=27.27 Aligned_cols=69 Identities=17% Similarity=0.214 Sum_probs=42.4
Q ss_pred ecccCChhhhHHHHHHHhhCCCee-------EE--EcCCCCChhHHHhhCCCCCcccEEEe--CCeeee-------hhHH
Q 027524 7 HGGLLSPFNYRVVCALKLKGIPFE-------LI--KEDLSNKSALLLKYNPVHKKIPVLVH--GGKPVC-------ESMV 68 (222)
Q Consensus 7 ~~~~~s~~~~~v~~~l~~~gi~~~-------~~--~v~~~~~~~~~~~~~p~~g~vP~L~~--~g~~l~-------es~a 68 (222)
+|-.||++|++..=..+++.-.|. ++ .||.+ +........-. .+.|+|.. +|..+. ..-|
T Consensus 20 FyAdWCrFSq~L~piF~EAa~~~~~e~P~~kvvwg~VDcd-~e~~ia~ky~I-~KyPTlKvfrnG~~~~rEYRg~RsVea 97 (375)
T KOG0912|consen 20 FYADWCRFSQMLKPIFEEAAAKFKQEFPEGKVVWGKVDCD-KEDDIADKYHI-NKYPTLKVFRNGEMMKREYRGQRSVEA 97 (375)
T ss_pred eehhhchHHHHHhHHHHHHHHHHHHhCCCcceEEEEcccc-hhhHHhhhhcc-ccCceeeeeeccchhhhhhccchhHHH
Confidence 456799999999888887654332 22 33333 23333333444 48999984 776665 2356
Q ss_pred HHHHHHhhC
Q 027524 69 ILEYIEETW 77 (222)
Q Consensus 69 I~~yL~~~~ 77 (222)
.++|+..+-
T Consensus 98 L~efi~kq~ 106 (375)
T KOG0912|consen 98 LIEFIEKQL 106 (375)
T ss_pred HHHHHHHHh
Confidence 777877753
No 233
>cd02972 DsbA_family DsbA family; consists of DsbA and DsbA-like proteins, including DsbC, DsbG, glutathione (GSH) S-transferase kappa (GSTK), 2-hydroxychromene-2-carboxylate (HCCA) isomerase, an oxidoreductase (FrnE) presumed to be involved in frenolicin biosynthesis, a 27-kDa outer membrane protein, and similar proteins. Members of this family contain a redox active CXXC motif (except GSTK and HCCA isomerase) imbedded in a TRX fold, and an alpha helical insert of about 75 residues (shorter in DsbC and DsbG) relative to TRX. DsbA is involved in the oxidative protein folding pathway in prokaryotes, catalyzing disulfide bond formation of proteins secreted into the bacterial periplasm. DsbC and DsbG function as protein disulfide isomerases and chaperones to correct non-native disulfide bonds formed by DsbA and prevent aggregation of incorrectly folded proteins.
Probab=32.27 E-value=66 Score=20.09 Aligned_cols=22 Identities=18% Similarity=0.120 Sum_probs=17.4
Q ss_pred eEEecccCChhhhHHHHHHHhh
Q 027524 4 VKLHGGLLSPFNYRVVCALKLK 25 (222)
Q Consensus 4 ~~L~~~~~s~~~~~v~~~l~~~ 25 (222)
+.+|..+.||+|....-.+...
T Consensus 1 i~~f~d~~Cp~C~~~~~~l~~~ 22 (98)
T cd02972 1 IVEFFDPLCPYCYLFEPELEKL 22 (98)
T ss_pred CeEEECCCCHhHHhhhHHHHHH
Confidence 4578888999999887777664
No 234
>TIGR01126 pdi_dom protein disulfide-isomerase domain. This model describes a domain of eukaryotic protein disulfide isomerases, generally found in two copies. The high cutoff for total score reflects the expectation of finding both copies. The domain is similar to thioredoxin but the redox-active disulfide region motif is APWCGHCK.
Probab=32.07 E-value=63 Score=20.68 Aligned_cols=52 Identities=17% Similarity=0.050 Sum_probs=28.5
Q ss_pred eEEecccCChhhhHHHHHHH-----hhCC-CeeEEEcCCCCChhHHHhhCCCCCcccEEE
Q 027524 4 VKLHGGLLSPFNYRVVCALK-----LKGI-PFELIKEDLSNKSALLLKYNPVHKKIPVLV 57 (222)
Q Consensus 4 ~~L~~~~~s~~~~~v~~~l~-----~~gi-~~~~~~v~~~~~~~~~~~~~p~~g~vP~L~ 57 (222)
+.+|+.++|+.|+...-.++ ..+- .+....++... ...+...... ..+|.+.
T Consensus 17 ~i~f~~~~C~~c~~~~~~~~~~~~~~~~~~~~~~~~~d~~~-~~~~~~~~~i-~~~P~~~ 74 (102)
T TIGR01126 17 LVEFYAPWCGHCKNLAPEYEKLAKELKGDPDIVLAKVDATA-EKDLASRFGV-SGFPTIK 74 (102)
T ss_pred EEEEECCCCHHHHhhChHHHHHHHHhccCCceEEEEEEccc-hHHHHHhCCC-CcCCEEE
Confidence 56778899999987543332 2222 24444444433 2333333333 4799875
No 235
>PF09413 DUF2007: Domain of unknown function (DUF2007); InterPro: IPR018551 This is a family of proteins with unknown function. ; PDB: 2HFV_A.
Probab=31.77 E-value=54 Score=19.69 Aligned_cols=33 Identities=21% Similarity=0.040 Sum_probs=20.6
Q ss_pred eEEecccCChhhhHHHHHHHhhCCCeeEEEcCC
Q 027524 4 VKLHGGLLSPFNYRVVCALKLKGIPFELIKEDL 36 (222)
Q Consensus 4 ~~L~~~~~s~~~~~v~~~l~~~gi~~~~~~v~~ 36 (222)
.+||.+....-++.++-+|+..||++.......
T Consensus 1 ~~l~~~~~~~ea~~i~~~L~~~gI~~~v~~~~~ 33 (67)
T PF09413_consen 1 KKLYTAGDPIEAELIKGLLEENGIPAFVKNEHM 33 (67)
T ss_dssp EEEEEE--HHHHHHHHHHHHHTT--EE--S---
T ss_pred CEEEEcCCHHHHHHHHHHHHhCCCcEEEECCcc
Confidence 367877777788999999999999998875543
No 236
>COG4289 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=31.56 E-value=1.6e+02 Score=24.95 Aligned_cols=101 Identities=9% Similarity=0.002 Sum_probs=58.1
Q ss_pred CCeeeehhHHHHHHHHhhCCCCCCCCCCHHHHHHHHHHHHHHhhh---cchhh------hhhcCHHHHHHHHHHHHHHHH
Q 027524 59 GGKPVCESMVILEYIEETWPQNPLMPSDPYDRAQARFWINFAENK---GAAVW------KLFRSIEDQENTMKEILEMLQ 129 (222)
Q Consensus 59 ~g~~l~es~aI~~yL~~~~~~~~l~p~~~~~~a~~~~~~~~~~~~---~~~~~------~~~~~~~~~~~~~~~~~~~l~ 129 (222)
.++.|.|+.++..-|-.. |+.-.-|-++.++.++..++...... .+.+. .+.-..-..+.........+.
T Consensus 117 rdQrlve~A~L~~Al~la-pe~lWe~l~~~ek~~l~r~l~a~rk~~~~dnNW~lF~~mVd~~~~~lg~e~D~sltd~~lk 195 (458)
T COG4289 117 RDQRLVELAALGFALWLA-PESLWEPLTPPEKQNLTRYLLAARKLQYADNNWKLFRVMVDFALDSLGIEGDRSLTDDKLK 195 (458)
T ss_pred ccchHHHHHHHHHHHHhC-hHhhcccCChHHHHHHHHHHHHhcccccccccchhhHHHHHHHHHHccCcccchhHHHHHH
Confidence 358899999988766543 22223377888888888887766554 12211 111001111111234456677
Q ss_pred HHHhcccCCCCccccCCCChhHHHHHHHHHHH
Q 027524 130 IVEEHGLGEKKFFHGDKIGLVDIAFGSIVHWL 161 (222)
Q Consensus 130 ~l~e~~L~~~~~l~G~~~s~AD~~l~~~l~~~ 161 (222)
.+ +.+..+.+|+-.+..---|.+.+..++..
T Consensus 196 ~l-~~fyigdGwyrDG~~~r~DyYnaf~~h~y 226 (458)
T COG4289 196 EL-DEFYIGDGWYRDGNQRRYDYYNAFAMHFY 226 (458)
T ss_pred Hh-hheeecccccccCCccchhhhhhhhhhhh
Confidence 78 77776666775445666677766666644
No 237
>cd02965 HyaE HyaE family; HyaE is also called HupG and HoxO. They are proteins serving a critical role in the assembly of multimeric [NiFe] hydrogenases, the enzymes that catalyze the oxidation of molecular hydrogen to enable microorganisms to utilize hydrogen as the sole energy source. The E. coli HyaE protein is a chaperone that specifically interacts with the twin-arginine translocation (Tat) signal peptide of the [NiFe] hydrogenase-1 beta subunit precursor. Tat signal peptides target precursor proteins to the Tat protein export system, which facilitates the transport of fully folded proteins across the inner membrane. HyaE may be involved in regulating the traffic of [NiFe] hydrogenase-1 on the Tat transport pathway.
Probab=31.14 E-value=1.3e+02 Score=20.56 Aligned_cols=60 Identities=22% Similarity=0.114 Sum_probs=36.4
Q ss_pred eEEecccC--ChhhhHHHHHHHhhCCCe----eEEEcCCCCChhHHHhhCCCCCcccEEEe--CCeeeeh
Q 027524 4 VKLHGGLL--SPFNYRVVCALKLKGIPF----ELIKEDLSNKSALLLKYNPVHKKIPVLVH--GGKPVCE 65 (222)
Q Consensus 4 ~~L~~~~~--s~~~~~v~~~l~~~gi~~----~~~~v~~~~~~~~~~~~~p~~g~vP~L~~--~g~~l~e 65 (222)
+.+++-.+ ||-|+.+.=.++..--.| .+..++.++.. +.....-. ..+|+|.. +|..+..
T Consensus 31 v~~f~~~~~~cp~c~~i~P~leela~e~~~~v~f~kVdid~~~-~la~~f~V-~sIPTli~fkdGk~v~~ 98 (111)
T cd02965 31 VLLLAGDPVRFPEVLDVAVVLPELLKAFPGRFRAAVVGRADEQ-ALAARFGV-LRTPALLFFRDGRYVGV 98 (111)
T ss_pred EEEecCCcccCcchhhhHhHHHHHHHHCCCcEEEEEEECCCCH-HHHHHcCC-CcCCEEEEEECCEEEEE
Confidence 34555554 999998887666554443 34456655544 44444343 57999873 8876644
No 238
>TIGR01130 ER_PDI_fam protein disulfide isomerases, eukaryotic. Members of this family have at least two protein-disulfide domains, each similar to thioredoxin but with the redox-active disulfide in the motif PWCGHCK, and an ER retention signal at the extreme C-terminus (KDEL, HDEL, and similar motifs).
Probab=31.04 E-value=3.2e+02 Score=23.22 Aligned_cols=73 Identities=19% Similarity=0.179 Sum_probs=42.6
Q ss_pred eEEecccCChhhhHHHHHHH-----h--hCCCeeEEEcCCCCChhHHHhhCCCCCcccEEEe--CCee----e---ehhH
Q 027524 4 VKLHGGLLSPFNYRVVCALK-----L--KGIPFELIKEDLSNKSALLLKYNPVHKKIPVLVH--GGKP----V---CESM 67 (222)
Q Consensus 4 ~~L~~~~~s~~~~~v~~~l~-----~--~gi~~~~~~v~~~~~~~~~~~~~p~~g~vP~L~~--~g~~----l---~es~ 67 (222)
+.+++.+||+.|+...=.+. + .+-++....++..... ++...-.. ..+|++.. +|.. . ....
T Consensus 22 ~v~f~a~wC~~c~~~~~~~~~~a~~~~~~~~~v~~~~vd~~~~~-~l~~~~~i-~~~Pt~~~~~~g~~~~~~~~g~~~~~ 99 (462)
T TIGR01130 22 LVEFYAPWCGHCKSLAPEYEKAADELKKKGPPIKLAKVDATEEK-DLAQKYGV-SGYPTLKIFRNGEDSVSDYNGPRDAD 99 (462)
T ss_pred EEEEECCCCHHHHhhhHHHHHHHHHHhhcCCceEEEEEECCCcH-HHHHhCCC-ccccEEEEEeCCccceeEecCCCCHH
Confidence 45677789999997643222 2 2334666667665432 33333333 46898763 4443 1 2456
Q ss_pred HHHHHHHhhCC
Q 027524 68 VILEYIEETWP 78 (222)
Q Consensus 68 aI~~yL~~~~~ 78 (222)
.|.+|+.+..+
T Consensus 100 ~l~~~i~~~~~ 110 (462)
T TIGR01130 100 GIVKYMKKQSG 110 (462)
T ss_pred HHHHHHHHhcC
Confidence 78888887754
No 239
>KOG2501 consensus Thioredoxin, nucleoredoxin and related proteins [General function prediction only]
Probab=30.79 E-value=1.8e+02 Score=21.39 Aligned_cols=34 Identities=21% Similarity=0.102 Sum_probs=22.1
Q ss_pred EEec-ccCChhhh-------HHHHHHHhhCCCeeEEEcCCCC
Q 027524 5 KLHG-GLLSPFNY-------RVVCALKLKGIPFELIKEDLSN 38 (222)
Q Consensus 5 ~L~~-~~~s~~~~-------~v~~~l~~~gi~~~~~~v~~~~ 38 (222)
.||. ..+||-|+ ...=.+...+-|++++.|+.+.
T Consensus 37 ~lyFsA~wC~pCR~FTP~Lk~fYe~l~~~~~~fEVvfVS~D~ 78 (157)
T KOG2501|consen 37 GLYFSAHWCPPCRDFTPILKDFYEELKDNAAPFEVVFVSSDR 78 (157)
T ss_pred EEEEEEEECCchhhCCchHHHHHHHHHhcCCceEEEEEecCC
Confidence 4443 34688777 3444555567789999998763
No 240
>COG3011 Predicted thiol-disulfide oxidoreductase [General function prediction only]
Probab=30.10 E-value=2.1e+02 Score=20.50 Aligned_cols=75 Identities=13% Similarity=0.026 Sum_probs=44.1
Q ss_pred ceEEecccCChhhhHHHHHHHhhCCCeeEEEcCCC-CChhHHHhhCCCCCccc---EEEeCCeeeehhHHHHHHHHhhC
Q 027524 3 EVKLHGGLLSPFNYRVVCALKLKGIPFELIKEDLS-NKSALLLKYNPVHKKIP---VLVHGGKPVCESMVILEYIEETW 77 (222)
Q Consensus 3 ~~~L~~~~~s~~~~~v~~~l~~~gi~~~~~~v~~~-~~~~~~~~~~p~~g~vP---~L~~~g~~l~es~aI~~yL~~~~ 77 (222)
+++++|..-|++|-..--.|..+.-.-.....++. +.....+...+....-+ .++.+|..+.+|.|+++-+-...
T Consensus 9 ~~vvlyDG~C~lC~~~vrfLi~~D~~~~i~f~~~q~e~g~~~l~~~~l~~~~~~s~~~~~~g~~~~~sdA~~~i~~~L~ 87 (137)
T COG3011 9 DLVVLYDGVCPLCDGWVRFLIRRDQGGRIRFAALQSEPGQALLEAAGLDPEDVDSVLLVEAGQLLVGSDAAIRILRLLP 87 (137)
T ss_pred CEEEEECCcchhHHHHHHHHHHhccCCcEEEEeccCchhhhHHhhcCCChhhhheeeEecCCceEeccHHHHHHHHHCC
Confidence 45777778899998766666666544444433333 22223333333211112 23458999999999999776654
No 241
>PF12728 HTH_17: Helix-turn-helix domain
Probab=30.06 E-value=91 Score=17.41 Aligned_cols=26 Identities=23% Similarity=0.206 Sum_probs=22.0
Q ss_pred CcccEEEeCCeeeehhHHHHHHHHhh
Q 027524 51 KKIPVLVHGGKPVCESMVILEYIEET 76 (222)
Q Consensus 51 g~vP~L~~~g~~l~es~aI~~yL~~~ 76 (222)
|.+|....++.....-.+|.+|+.++
T Consensus 25 g~i~~~~~g~~~~~~~~~l~~~~~~~ 50 (51)
T PF12728_consen 25 GKIPPFKIGRKWRIPKSDLDRWLERR 50 (51)
T ss_pred CCCCeEEeCCEEEEeHHHHHHHHHhC
Confidence 78998888888888889999998764
No 242
>PTZ00443 Thioredoxin domain-containing protein; Provisional
Probab=29.62 E-value=2.7e+02 Score=21.67 Aligned_cols=72 Identities=13% Similarity=0.037 Sum_probs=38.9
Q ss_pred eEEecccCChhhhHHHHHHHhh----CCCeeEEEcCCCCChhHHHhhCCCCCcccEEE--eCCeeee------hhHHHHH
Q 027524 4 VKLHGGLLSPFNYRVVCALKLK----GIPFELIKEDLSNKSALLLKYNPVHKKIPVLV--HGGKPVC------ESMVILE 71 (222)
Q Consensus 4 ~~L~~~~~s~~~~~v~~~l~~~----gi~~~~~~v~~~~~~~~~~~~~p~~g~vP~L~--~~g~~l~------es~aI~~ 71 (222)
+..++.+||+.|+...=.++.. +-.+....+|.... ..+.+.... ..+|++. .+|..+. ....|.+
T Consensus 56 lV~FyApWC~~Ck~~~P~~e~la~~~~~~v~~~~VD~~~~-~~l~~~~~I-~~~PTl~~f~~G~~v~~~~G~~s~e~L~~ 133 (224)
T PTZ00443 56 FVKFYAPWCSHCRKMAPAWERLAKALKGQVNVADLDATRA-LNLAKRFAI-KGYPTLLLFDKGKMYQYEGGDRSTEKLAA 133 (224)
T ss_pred EEEEECCCChHHHHHHHHHHHHHHHcCCCeEEEEecCccc-HHHHHHcCC-CcCCEEEEEECCEEEEeeCCCCCHHHHHH
Confidence 3456778999998664444332 21244455555433 333333333 5799887 3665431 2344556
Q ss_pred HHHhhC
Q 027524 72 YIEETW 77 (222)
Q Consensus 72 yL~~~~ 77 (222)
|+.+.+
T Consensus 134 fi~~~~ 139 (224)
T PTZ00443 134 FALGDF 139 (224)
T ss_pred HHHHHH
Confidence 665554
No 243
>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=29.36 E-value=2.7e+02 Score=22.83 Aligned_cols=73 Identities=14% Similarity=0.185 Sum_probs=46.1
Q ss_pred eEEecccCChhhhHHHHHHHh----hCCCeeEEEcCCCCChhHHHhhCCCCCcccEEE--eCCeeeehh------HHHHH
Q 027524 4 VKLHGGLLSPFNYRVVCALKL----KGIPFELIKEDLSNKSALLLKYNPVHKKIPVLV--HGGKPVCES------MVILE 71 (222)
Q Consensus 4 ~~L~~~~~s~~~~~v~~~l~~----~gi~~~~~~v~~~~~~~~~~~~~p~~g~vP~L~--~~g~~l~es------~aI~~ 71 (222)
+.+++.|+|+-|....=.|+- .+=.|....|+.+....--...+. ..||++. .+|.+|-+- ..|-+
T Consensus 47 lV~fWap~~~~c~qL~p~Lekla~~~~G~f~LakvN~D~~p~vAaqfgi--qsIPtV~af~dGqpVdgF~G~qPesqlr~ 124 (304)
T COG3118 47 LVDFWAPWCGPCKQLTPTLEKLAAEYKGKFKLAKVNCDAEPMVAAQFGV--QSIPTVYAFKDGQPVDGFQGAQPESQLRQ 124 (304)
T ss_pred EEEecCCCCchHHHHHHHHHHHHHHhCCceEEEEecCCcchhHHHHhCc--CcCCeEEEeeCCcCccccCCCCcHHHHHH
Confidence 456677788888765544443 444677888887754443334444 5899876 477665332 36888
Q ss_pred HHHhhCC
Q 027524 72 YIEETWP 78 (222)
Q Consensus 72 yL~~~~~ 78 (222)
||++..|
T Consensus 125 ~ld~~~~ 131 (304)
T COG3118 125 FLDKVLP 131 (304)
T ss_pred HHHHhcC
Confidence 8888655
No 244
>cd03002 PDI_a_MPD1_like PDI family, MPD1-like subfamily; composed of eukaryotic proteins similar to Saccharomyces cerevisiae MPD1 protein, which contains a single redox active TRX domain located at the N-terminus, and an ER retention signal at the C-terminus indicative of an ER-resident protein. MPD1 has been shown to suppress the maturation defect of carboxypeptidase Y caused by deletion of the yeast PDI1 gene. Other characterized members of this subfamily include the Aspergillus niger prpA protein and Giardia PDI-1. PrpA is non-essential to strain viability, however, its transcript level is induced by heterologous protein expression suggesting a possible role in oxidative protein folding during high protein production. Giardia PDI-1 has the ability to refold scrambled RNase and exhibits transglutaminase activity.
Probab=29.33 E-value=1.7e+02 Score=19.08 Aligned_cols=53 Identities=11% Similarity=-0.058 Sum_probs=28.7
Q ss_pred eEEecccCChhhhHHHHHHHhh----CCCeeEEEcCCCC-ChhHHHhhCCCCCcccEEE
Q 027524 4 VKLHGGLLSPFNYRVVCALKLK----GIPFELIKEDLSN-KSALLLKYNPVHKKIPVLV 57 (222)
Q Consensus 4 ~~L~~~~~s~~~~~v~~~l~~~----gi~~~~~~v~~~~-~~~~~~~~~p~~g~vP~L~ 57 (222)
+..++.++|+.|+...-.++.. +-.+.+..++.+. ....+...... ..+|++.
T Consensus 22 lv~f~a~wC~~C~~~~~~~~~~a~~~~~~~~~~~v~~~~~~~~~~~~~~~i-~~~Pt~~ 79 (109)
T cd03002 22 LVEFYAPWCGHCKNLKPEYAKAAKELDGLVQVAAVDCDEDKNKPLCGKYGV-QGFPTLK 79 (109)
T ss_pred EEEEECCCCHHHHhhChHHHHHHHHhcCCceEEEEecCccccHHHHHHcCC-CcCCEEE
Confidence 4566778999998664433332 2223444455442 12333333333 5799887
No 245
>COG2761 FrnE Predicted dithiol-disulfide isomerase involved in polyketide biosynthesis [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=29.09 E-value=28 Score=27.16 Aligned_cols=22 Identities=18% Similarity=0.353 Sum_probs=15.6
Q ss_pred ceEEecccCChhhhHHHHHHHh
Q 027524 3 EVKLHGGLLSPFNYRVVCALKL 24 (222)
Q Consensus 3 ~~~L~~~~~s~~~~~v~~~l~~ 24 (222)
+|.+|+...||||....--|+.
T Consensus 7 ~I~v~sD~vCPwC~ig~~rL~k 28 (225)
T COG2761 7 EIDVFSDVVCPWCYIGKRRLEK 28 (225)
T ss_pred EEEEEeCCcCchhhcCHHHHHH
Confidence 5778888899999854444443
No 246
>cd02970 PRX_like2 Peroxiredoxin (PRX)-like 2 family; hypothetical proteins that show sequence similarity to PRXs. Members of this group contain a CXXC motif, similar to TRX. The second cysteine in the motif corresponds to the peroxidatic cysteine of PRX, however, these proteins do not contain the other two residues of the catalytic triad of PRX. PRXs confer a protective antioxidant role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either thioredoxin, glutathione, trypanothione and AhpF. TRXs alter the redox state of target proteins by catalyzing the reduction of their disulfide bonds via the CXXC motif using reducing equivalents derived from either NADPH or ferredoxins.
Probab=28.65 E-value=1.4e+02 Score=20.61 Aligned_cols=51 Identities=22% Similarity=0.219 Sum_probs=26.6
Q ss_pred ccCChhhhHHHHHHHh-----hCCCeeEEEcCCC--CChhHHHhhCCCCCcccEEEeCCe
Q 027524 9 GLLSPFNYRVVCALKL-----KGIPFELIKEDLS--NKSALLLKYNPVHKKIPVLVHGGK 61 (222)
Q Consensus 9 ~~~s~~~~~v~~~l~~-----~gi~~~~~~v~~~--~~~~~~~~~~p~~g~vP~L~~~g~ 61 (222)
..+||.|+.-.-.|.. .+-.++++.|..+ .....+.+... -..|++.|.+.
T Consensus 33 ~~~Cp~C~~~~~~l~~~~~~~~~~~v~vv~V~~~~~~~~~~~~~~~~--~~~p~~~D~~~ 90 (149)
T cd02970 33 GFGCPFCREYLRALSKLLPELDALGVELVAVGPESPEKLEAFDKGKF--LPFPVYADPDR 90 (149)
T ss_pred CCCChhHHHHHHHHHHHHHHHHhcCeEEEEEeCCCHHHHHHHHHhcC--CCCeEEECCch
Confidence 4689999864433332 2233455555443 22223444444 36888877543
No 247
>cd04911 ACT_AKiii-YclM-BS_1 ACT domains located C-terminal to the catalytic domain of the lysine plus threonine-sensitive aspartokinase isoenzyme AKIII. This CD includes the first of two ACT domains located C-terminal to the catalytic domain of the lysine plus threonine-sensitive aspartokinase isoenzyme AKIII, a monofunctional class enzyme found in Bacilli (Bacillus subtilis (BS) YclM) and Clostridia species. Aspartokinase is the first enzyme in the aspartate metabolic pathway and catalyzes the conversion of aspartate and ATP to aspartylphosphate and ADP. Bacillus subtilis YclM is reported to be a single polypeptide of 50 kD. AKIII from Bacillus subtilis strain 168 is induced by lysine and repressed by threonine and it is synergistically inhibited by lysine and threonine. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=28.65 E-value=81 Score=19.99 Aligned_cols=25 Identities=20% Similarity=0.372 Sum_probs=21.6
Q ss_pred CChhhhHHHHHHHhhCCCeeEEEcC
Q 027524 11 LSPFNYRVVCALKLKGIPFELIKED 35 (222)
Q Consensus 11 ~s~~~~~v~~~l~~~gi~~~~~~v~ 35 (222)
--+|++++.=.++..|++|+..+-.
T Consensus 14 evGF~rk~L~I~E~~~is~Eh~PSG 38 (76)
T cd04911 14 EVGFGRKLLSILEDNGISYEHMPSG 38 (76)
T ss_pred hhcHHHHHHHHHHHcCCCEeeecCC
Confidence 3578999999999999999998654
No 248
>PRK06217 hypothetical protein; Validated
Probab=28.03 E-value=85 Score=23.21 Aligned_cols=29 Identities=17% Similarity=0.106 Sum_probs=26.2
Q ss_pred CcceEEecccCChhhhHHHHHHHhhCCCe
Q 027524 1 MAEVKLHGGLLSPFNYRVVCALKLKGIPF 29 (222)
Q Consensus 1 M~~~~L~~~~~s~~~~~v~~~l~~~gi~~ 29 (222)
|..|.|.|.++|+-+-.++.+.+..|+++
T Consensus 1 ~~~I~i~G~~GsGKSTla~~L~~~l~~~~ 29 (183)
T PRK06217 1 MMRIHITGASGSGTTTLGAALAERLDIPH 29 (183)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHcCCcE
Confidence 66689999999999999999999999874
No 249
>cd03021 DsbA_GSTK DsbA family, Glutathione (GSH) S-transferase Kappa (GSTK) subfamily; GSTK is a member of the GST family of enzymes which catalyzes the transfer of the thiol of GSH to electrophilic substrates. It is specifically located in the mitochondria and peroxisomes, unlike other members of the canonical GST family, which are mainly cytosolic. The biological substrates of GSTK are not yet known. It is presumed to have a protective role during respiration when large amounts of reactive oxygen species are generated. GSTK has the same general fold as DsbA, consisting of a thioredoxin domain interrupted by an alpha-helical domain and its biological unit is a homodimer. GSTK is closely related to the bacterial enzyme, 2-hydroxychromene-2-carboxylate (HCCA) isomerase. It shows little sequence similarity to the other members of the GST family.
Probab=27.85 E-value=92 Score=23.65 Aligned_cols=34 Identities=15% Similarity=0.214 Sum_probs=24.2
Q ss_pred ceEEecccCChhhhHH----HHHHHhhCCCeeEEEcCC
Q 027524 3 EVKLHGGLLSPFNYRV----VCALKLKGIPFELIKEDL 36 (222)
Q Consensus 3 ~~~L~~~~~s~~~~~v----~~~l~~~gi~~~~~~v~~ 36 (222)
+|.+|+...||||... .-++...+++++.+++.+
T Consensus 2 ~Id~~~D~vcPwcylg~~~l~~~~~~~~v~i~~~P~~L 39 (209)
T cd03021 2 KIELYYDVVSPYSYLAFEVLCRYQTAWNVDITYVPVFL 39 (209)
T ss_pred ceEEEEeCCChHHHHHHHHHHHHHHHhCCeEEEEeeeh
Confidence 4789999999999865 334445677777777654
No 250
>PF07728 AAA_5: AAA domain (dynein-related subfamily); InterPro: IPR011704 The ATPases Associated to a variety of cellular Activities (AAA) are a family distinguished by a highly conserved module of 230 amino acids []. The highly conserved nature of this module across taxa suggests that it has a key cellular role. Members of the family are involved in diverse cellular functions including gene expression, peroxisome assembly and vesicle mediated transport. Although the role of this ATPase AAA domain is not, as yet, clear, the AAA+ superfamily of proteins to which the AAA ATPases belong has a chaperone-like function in the assembly, operation or disassembly of proteins []. This ATPase domain includes some proteins not detected by the IPR003959 from INTERPRO model.; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NBX_X 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.
Probab=27.80 E-value=2.1e+02 Score=19.73 Aligned_cols=41 Identities=20% Similarity=-0.023 Sum_probs=33.0
Q ss_pred ceEEecccCChhhhHHHHHHHhhCCCeeEEEcCCCCChhHH
Q 027524 3 EVKLHGGLLSPFNYRVVCALKLKGIPFELIKEDLSNKSALL 43 (222)
Q Consensus 3 ~~~L~~~~~s~~~~~v~~~l~~~gi~~~~~~v~~~~~~~~~ 43 (222)
++-|+|-++++-+..++.+++..+.++..+.++......++
T Consensus 1 ~vlL~G~~G~GKt~l~~~la~~~~~~~~~i~~~~~~~~~dl 41 (139)
T PF07728_consen 1 PVLLVGPPGTGKTTLARELAALLGRPVIRINCSSDTTEEDL 41 (139)
T ss_dssp EEEEEESSSSSHHHHHHHHHHHHTCEEEEEE-TTTSTHHHH
T ss_pred CEEEECCCCCCHHHHHHHHHHHhhcceEEEEeccccccccc
Confidence 36789999999999999999999999999888765444444
No 251
>PRK11657 dsbG disulfide isomerase/thiol-disulfide oxidase; Provisional
Probab=27.79 E-value=92 Score=24.67 Aligned_cols=20 Identities=10% Similarity=0.087 Sum_probs=16.0
Q ss_pred eEEecccCChhhhHHHHHHH
Q 027524 4 VKLHGGLLSPFNYRVVCALK 23 (222)
Q Consensus 4 ~~L~~~~~s~~~~~v~~~l~ 23 (222)
+..|..+.||||++..--+.
T Consensus 121 I~vFtDp~CpyC~kl~~~l~ 140 (251)
T PRK11657 121 VYVFADPNCPYCKQFWQQAR 140 (251)
T ss_pred EEEEECCCChhHHHHHHHHH
Confidence 56778889999999876654
No 252
>PRK08118 topology modulation protein; Reviewed
Probab=26.96 E-value=94 Score=22.75 Aligned_cols=31 Identities=19% Similarity=-0.020 Sum_probs=27.5
Q ss_pred CcceEEecccCChhhhHHHHHHHhhCCCeeE
Q 027524 1 MAEVKLHGGLLSPFNYRVVCALKLKGIPFEL 31 (222)
Q Consensus 1 M~~~~L~~~~~s~~~~~v~~~l~~~gi~~~~ 31 (222)
|..+.+.|.++|+-+-.++.+.+..|+|+-.
T Consensus 1 m~rI~I~G~~GsGKSTlak~L~~~l~~~~~~ 31 (167)
T PRK08118 1 MKKIILIGSGGSGKSTLARQLGEKLNIPVHH 31 (167)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHhCCCcee
Confidence 6778999999999999999999999998543
No 253
>cd02998 PDI_a_ERp38 PDIa family, endoplasmic reticulum protein 38 (ERp38) subfamily; composed of proteins similar to the P5-like protein first isolated from alfalfa, which contains two redox active TRX (a) domains at the N-terminus, like human P5, and a C-terminal domain with homology to the C-terminal domain of ERp29, unlike human P5. The cDNA clone of this protein (named G1) was isolated from an alfalfa cDNA library by screening with human protein disulfide isomerase (PDI) cDNA. The G1 protein is constitutively expressed in all major organs of the plant and its expression is induced by treatment with tunicamycin, indicating that it may be a glucose-regulated protein. The G1 homolog in the eukaryotic social amoeba Dictyostelium discoideum is also described as a P5-like protein, which is located in the endoplasmic reticulum (ER) despite the absence of an ER-retrieval signal. G1 homologs from Aspergillus niger and Neurospora crassa have also been characterized, and are named TIGA and ER
Probab=26.42 E-value=1.8e+02 Score=18.54 Aligned_cols=53 Identities=13% Similarity=-0.043 Sum_probs=30.0
Q ss_pred eEEecccCChhhhHHHHHHHh----hC--CCeeEEEcCCCCChhHHHhhCCCCCcccEEE
Q 027524 4 VKLHGGLLSPFNYRVVCALKL----KG--IPFELIKEDLSNKSALLLKYNPVHKKIPVLV 57 (222)
Q Consensus 4 ~~L~~~~~s~~~~~v~~~l~~----~g--i~~~~~~v~~~~~~~~~~~~~p~~g~vP~L~ 57 (222)
+..++.++|+.|+...-.++. .+ -.+....++.....+.+...-.. ..+|++.
T Consensus 22 ~v~f~a~~C~~C~~~~~~~~~~~~~~~~~~~~~~~~id~~~~~~~~~~~~~i-~~~P~~~ 80 (105)
T cd02998 22 LVEFYAPWCGHCKNLAPEYEKLAAVFANEDDVVIAKVDADEANKDLAKKYGV-SGFPTLK 80 (105)
T ss_pred EEEEECCCCHHHHhhChHHHHHHHHhCCCCCEEEEEEECCCcchhhHHhCCC-CCcCEEE
Confidence 456778899999855433322 22 23566666655413333333344 5799886
No 254
>PRK03731 aroL shikimate kinase II; Reviewed
Probab=26.01 E-value=1.1e+02 Score=22.22 Aligned_cols=30 Identities=13% Similarity=-0.077 Sum_probs=26.2
Q ss_pred cceEEecccCChhhhHHHHHHHhhCCCeeE
Q 027524 2 AEVKLHGGLLSPFNYRVVCALKLKGIPFEL 31 (222)
Q Consensus 2 ~~~~L~~~~~s~~~~~v~~~l~~~gi~~~~ 31 (222)
+.+.|.|.++|+=+...+.+.+..|++|-.
T Consensus 3 ~~i~~~G~~GsGKst~~~~la~~lg~~~~d 32 (171)
T PRK03731 3 QPLFLVGARGCGKTTVGMALAQALGYRFVD 32 (171)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHhCCCEEE
Confidence 368888999999999999999999998743
No 255
>PLN02309 5'-adenylylsulfate reductase
Probab=25.42 E-value=2.4e+02 Score=24.67 Aligned_cols=54 Identities=11% Similarity=0.097 Sum_probs=31.1
Q ss_pred eEEecccCChhhhHHHHHHHh-----hCCCeeEEEcCCCCChhHHHh-hCCCCCcccEEEe
Q 027524 4 VKLHGGLLSPFNYRVVCALKL-----KGIPFELIKEDLSNKSALLLK-YNPVHKKIPVLVH 58 (222)
Q Consensus 4 ~~L~~~~~s~~~~~v~~~l~~-----~gi~~~~~~v~~~~~~~~~~~-~~p~~g~vP~L~~ 58 (222)
+..||.+||+.|+...-.++. .+-.+.+..++.+.....+.. ..-. ..+|++..
T Consensus 369 lV~FyApWC~~Cq~m~p~~e~LA~~~~~~~V~f~kVD~d~~~~~la~~~~~I-~~~PTil~ 428 (457)
T PLN02309 369 LVVLYAPWCPFCQAMEASYEELAEKLAGSGVKVAKFRADGDQKEFAKQELQL-GSFPTILL 428 (457)
T ss_pred EEEEECCCChHHHHHHHHHHHHHHHhccCCeEEEEEECCCcchHHHHhhCCC-ceeeEEEE
Confidence 567788999999865544332 344455666665522223332 1233 57998873
No 256
>cd03025 DsbA_FrnE_like DsbA family, FrnE-like subfamily; composed of uncharacterized proteins containing a CXXC motif with similarity to DsbA and FrnE. FrnE is presumed to be a thiol oxidoreductase involved in polyketide biosynthesis, specifically in the production of the aromatic antibiotics frenolicin and nanaomycins.
Probab=24.97 E-value=1.3e+02 Score=22.09 Aligned_cols=33 Identities=21% Similarity=0.088 Sum_probs=21.3
Q ss_pred ceEEecccCChhhhHHHH----HHHhh--CCCeeEEEcC
Q 027524 3 EVKLHGGLLSPFNYRVVC----ALKLK--GIPFELIKED 35 (222)
Q Consensus 3 ~~~L~~~~~s~~~~~v~~----~l~~~--gi~~~~~~v~ 35 (222)
+|.+|..+.||||....- +.+.. +++++.+...
T Consensus 2 ~i~~~~D~~cp~c~~~~~~l~~l~~~~~~~~~v~~~~~~ 40 (193)
T cd03025 2 ELYYFIDPLCGWCYGFEPLLEKLKEEYGGGIEVELHLGG 40 (193)
T ss_pred eEEEEECCCCchhhCchHHHHHHHHHhCCCceEEEEecc
Confidence 378899999999984443 33343 5666655443
No 257
>PF00731 AIRC: AIR carboxylase; InterPro: IPR000031 Phosphoribosylaminoimidazole carboxylase is a fusion protein in plants and fungi, but consists of two non-interacting proteins in bacteria, PurK and PurE. PurK, N5-carboxyaminoimidazole ribonucleotide (N5_CAIR) synthetase, catalyzes the conversion of 5-aminoimidazole ribonucleotide (AIR), ATP, and bicarbonate to N5-CAIR, ADP, and Pi. PurE converts N5-CAIR to CAIR, the sixth step of de novo purine biosynthesis. In the presence of high concentrations of bicarbonate, PurE is reported able to convert AIR to CAIR directly and without ATP. Some members of this family contain two copies of this domain []. The crystal structure of PurE indicates a unique quaternary structure that confirms the octameric nature of the enzyme [].; GO: 0004638 phosphoribosylaminoimidazole carboxylase activity, 0006189 'de novo' IMP biosynthetic process; PDB: 3TRH_O 2YWX_A 2NSL_A 1D7A_A 2NSJ_A 1QCZ_A 2ATE_A 2NSH_A 3RG8_C 3RGG_D ....
Probab=24.84 E-value=1.5e+02 Score=21.57 Aligned_cols=34 Identities=21% Similarity=0.210 Sum_probs=23.9
Q ss_pred cCChhhhHHHHHHHhhCCCeeEEEcCCCCChhHH
Q 027524 10 LLSPFNYRVVCALKLKGIPFELIKEDLSNKSALL 43 (222)
Q Consensus 10 ~~s~~~~~v~~~l~~~gi~~~~~~v~~~~~~~~~ 43 (222)
+.-+.++.++-.|+..|++|+.........++.+
T Consensus 11 SD~~~~~~a~~~L~~~gi~~~~~V~saHR~p~~l 44 (150)
T PF00731_consen 11 SDLPIAEEAAKTLEEFGIPYEVRVASAHRTPERL 44 (150)
T ss_dssp GGHHHHHHHHHHHHHTT-EEEEEE--TTTSHHHH
T ss_pred HHHHHHHHHHHHHHHcCCCEEEEEEeccCCHHHH
Confidence 3567899999999999999998877655433433
No 258
>COG3150 Predicted esterase [General function prediction only]
Probab=24.56 E-value=92 Score=23.34 Aligned_cols=33 Identities=24% Similarity=0.134 Sum_probs=27.6
Q ss_pred eEEecccCChhhhHHHHHHHhhCCCeeEEEcCC
Q 027524 4 VKLHGGLLSPFNYRVVCALKLKGIPFELIKEDL 36 (222)
Q Consensus 4 ~~L~~~~~s~~~~~v~~~l~~~gi~~~~~~v~~ 36 (222)
+-|+||+-||.+++..++++..+-.+..+....
T Consensus 3 lYlHGFnSSP~shka~l~~q~~~~~~~~i~y~~ 35 (191)
T COG3150 3 LYLHGFNSSPGSHKAVLLLQFIDEDVRDIEYST 35 (191)
T ss_pred EEEecCCCCcccHHHHHHHHHHhccccceeeec
Confidence 457899999999999999999988777776543
No 259
>cd02961 PDI_a_family Protein Disulfide Isomerase (PDIa) family, redox active TRX domains; composed of eukaryotic proteins involved in oxidative protein folding in the endoplasmic reticulum (ER) by acting as catalysts and folding assistants. Members of this family include PDI and PDI-related proteins like ERp72, ERp57 (or ERp60), ERp44, P5, PDIR, ERp46 and the transmembrane PDIs. PDI, ERp57, ERp72, P5, PDIR and ERp46 are all oxidases, catalyzing the formation of disulfide bonds of newly synthesized polypeptides in the ER. They also exhibit reductase activity in acting as isomerases to correct any non-native disulfide bonds, as well as chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. These proteins usually contain multiple copies of a redox active TRX (a) domain containing a CXXC motif, and may also contain one or more redox inactive TRX-like (b) domains. Only one a domain is required for the oxidase function but multiple copies
Probab=24.41 E-value=1.9e+02 Score=18.01 Aligned_cols=52 Identities=10% Similarity=-0.082 Sum_probs=31.0
Q ss_pred eEEecccCChhhhHHHHHHHh----h--CCCeeEEEcCCCCChhHHHhhCCCCCcccEEE
Q 027524 4 VKLHGGLLSPFNYRVVCALKL----K--GIPFELIKEDLSNKSALLLKYNPVHKKIPVLV 57 (222)
Q Consensus 4 ~~L~~~~~s~~~~~v~~~l~~----~--gi~~~~~~v~~~~~~~~~~~~~p~~g~vP~L~ 57 (222)
+.+|+.++|++|+...-.+.. . +-.+....++... ...+...-.. ..+|++.
T Consensus 19 ~v~f~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~~~v~~~~-~~~~~~~~~i-~~~Pt~~ 76 (101)
T cd02961 19 LVEFYAPWCGHCKALAPEYEKLAKELKGDGKVVVAKVDCTA-NNDLCSEYGV-RGYPTIK 76 (101)
T ss_pred EEEEECCCCHHHHhhhHHHHHHHHHhccCCceEEEEeeccc-hHHHHHhCCC-CCCCEEE
Confidence 456777899999986665543 2 3345555665543 2333333333 4799876
No 260
>PF09868 DUF2095: Uncharacterized protein conserved in archaea (DUF2095); InterPro: IPR018662 This domain, found in various hypothetical prokaryotic proteins, has no known function.
Probab=24.01 E-value=50 Score=22.79 Aligned_cols=62 Identities=15% Similarity=0.077 Sum_probs=37.2
Q ss_pred hHHHHHHHhhCCCeeEEEcCCCC-ChhHHHhhCCCCCcccEEEe---CCeeeehhHHHHHHHHhhC
Q 027524 16 YRVVCALKLKGIPFELIKEDLSN-KSALLLKYNPVHKKIPVLVH---GGKPVCESMVILEYIEETW 77 (222)
Q Consensus 16 ~~v~~~l~~~gi~~~~~~v~~~~-~~~~~~~~~p~~g~vP~L~~---~g~~l~es~aI~~yL~~~~ 77 (222)
..++=+.+..|++.+....+-.. ...+-....|+.|-+|+++| .=.+.-|..-|+.||.++.
T Consensus 26 ~LakEl~e~~g~~I~~~r~~~~~~l~~e~~~~~~~sGy~PtViD~lrRC~T~EEALEVInylek~G 91 (128)
T PF09868_consen 26 ALAKELEEEEGISIEGYRLDEEQVLEEEEEEPDDFSGYNPTVIDYLRRCKTDEEALEVINYLEKRG 91 (128)
T ss_pred HHHHHHhccCCCceeeeechhhhhhhhccccCCCccCCCChHHHHHHHhCcHHHHHHHHHHHHHhC
Confidence 44555667788887765554221 01111113444478888875 3466677788999988874
No 261
>COG0703 AroK Shikimate kinase [Amino acid transport and metabolism]
Probab=23.98 E-value=1.1e+02 Score=22.76 Aligned_cols=30 Identities=17% Similarity=0.001 Sum_probs=27.8
Q ss_pred ceEEecccCChhhhHHHHHHHhhCCCeeEE
Q 027524 3 EVKLHGGLLSPFNYRVVCALKLKGIPFELI 32 (222)
Q Consensus 3 ~~~L~~~~~s~~~~~v~~~l~~~gi~~~~~ 32 (222)
++.|.|+++++-|-..+.+...+|.+|-..
T Consensus 4 ~IvLiG~mGaGKSTIGr~LAk~L~~~F~D~ 33 (172)
T COG0703 4 NIVLIGFMGAGKSTIGRALAKALNLPFIDT 33 (172)
T ss_pred cEEEEcCCCCCHhHHHHHHHHHcCCCcccc
Confidence 689999999999999999999999998665
No 262
>COG5515 Uncharacterized conserved small protein [Function unknown]
Probab=23.90 E-value=79 Score=19.06 Aligned_cols=21 Identities=38% Similarity=0.188 Sum_probs=15.9
Q ss_pred eEEecc----cCChhhhHHHHHHHh
Q 027524 4 VKLHGG----LLSPFNYRVVCALKL 24 (222)
Q Consensus 4 ~~L~~~----~~s~~~~~v~~~l~~ 24 (222)
|+||.+ ..|.||++|-.+|..
T Consensus 3 mKLYRfiTGpDDssFChrvta~LN~ 27 (70)
T COG5515 3 MKLYRFITGPDDSSFCHRVTAALNK 27 (70)
T ss_pred ceeeEeecCCchHHHHHHHHHHHhC
Confidence 677755 457799999988864
No 263
>PRK00625 shikimate kinase; Provisional
Probab=23.82 E-value=1.2e+02 Score=22.46 Aligned_cols=31 Identities=19% Similarity=0.005 Sum_probs=26.4
Q ss_pred CcceEEecccCChhhhHHHHHHHhhCCCeeEE
Q 027524 1 MAEVKLHGGLLSPFNYRVVCALKLKGIPFELI 32 (222)
Q Consensus 1 M~~~~L~~~~~s~~~~~v~~~l~~~gi~~~~~ 32 (222)
|+ +.|.|+++|+-+...+.+.+..|.++-..
T Consensus 1 ~~-I~LiG~pGsGKTT~~k~La~~l~~~~id~ 31 (173)
T PRK00625 1 MQ-IFLCGLPTVGKTSFGKALAKFLSLPFFDT 31 (173)
T ss_pred CE-EEEECCCCCCHHHHHHHHHHHhCCCEEEh
Confidence 44 78999999999999999999999877443
No 264
>PF05496 RuvB_N: Holliday junction DNA helicase ruvB N-terminus; InterPro: IPR008824 The RuvB protein makes up part of the RuvABC revolvasome which catalyses the resolution of Holliday junctions that arise during genetic recombination and DNA repair. Branch migration is catalysed by the RuvB protein that is targeted to the Holliday junction by the structure specific RuvA protein []. This group of sequences contain this signature which is located in the N-terminal region of the proteins.; GO: 0009378 four-way junction helicase activity, 0006281 DNA repair, 0006310 DNA recombination; PDB: 1IQP_B 3PFI_B 1IXR_C 1HQC_B 1IXS_B.
Probab=23.42 E-value=2.5e+02 Score=22.11 Aligned_cols=33 Identities=9% Similarity=-0.037 Sum_probs=27.4
Q ss_pred ceEEecccCChhhhHHHHHHHhhCCCeeEEEcC
Q 027524 3 EVKLHGGLLSPFNYRVVCALKLKGIPFELIKED 35 (222)
Q Consensus 3 ~~~L~~~~~s~~~~~v~~~l~~~gi~~~~~~v~ 35 (222)
.+.|||-|+++-+--++++..+.|.++....-.
T Consensus 52 h~lf~GPPG~GKTTLA~IIA~e~~~~~~~~sg~ 84 (233)
T PF05496_consen 52 HMLFYGPPGLGKTTLARIIANELGVNFKITSGP 84 (233)
T ss_dssp EEEEESSTTSSHHHHHHHHHHHCT--EEEEECC
T ss_pred eEEEECCCccchhHHHHHHHhccCCCeEeccch
Confidence 478999999999999999999999999877653
No 265
>COG5494 Predicted thioredoxin/glutaredoxin [Posttranslational modification, protein turnover, chaperones]
Probab=23.33 E-value=2.5e+02 Score=21.80 Aligned_cols=70 Identities=19% Similarity=0.149 Sum_probs=44.9
Q ss_pred eEEecccCChhhhHHHHHHHhhCCCeeEEEcCCCCChhHHHhhCCCCCcccEEEeCCeeee----hhHHHHHHHHh
Q 027524 4 VKLHGGLLSPFNYRVVCALKLKGIPFELIKEDLSNKSALLLKYNPVHKKIPVLVHGGKPVC----ESMVILEYIEE 75 (222)
Q Consensus 4 ~~L~~~~~s~~~~~v~~~l~~~gi~~~~~~v~~~~~~~~~~~~~p~~g~vP~L~~~g~~l~----es~aI~~yL~~ 75 (222)
+++|.+-.|..|-...=.|+.+|+-=.+..++.......+.. |-. -.+|.+..||..+. |-..|-+-+.-
T Consensus 13 VkI~~HktC~ssy~Lf~~L~nkgll~~Vkii~a~~p~f~~~~-~~V-~SvP~Vf~DGel~~~dpVdp~~ies~~~G 86 (265)
T COG5494 13 VKIFTHKTCVSSYMLFEYLENKGLLGKVKIIDAELPPFLAFE-KGV-ISVPSVFIDGELVYADPVDPEEIESILSG 86 (265)
T ss_pred EEEEEecchHHHHHHHHHHHhcCCCCCceEEEcCCChHHHhh-cce-eecceEEEcCeEEEcCCCCHHHHHHHHcC
Confidence 677888888888888889999998655555554432222222 333 48999988887653 44445444443
No 266
>cd03024 DsbA_FrnE DsbA family, FrnE subfamily; FrnE is a DsbA-like protein containing a CXXC motif. It is presumed to be a thiol oxidoreductase involved in polyketide biosynthesis, specifically in the production of the aromatic antibiotics frenolicin and nanaomycins.
Probab=22.46 E-value=1e+02 Score=22.91 Aligned_cols=32 Identities=13% Similarity=0.188 Sum_probs=20.3
Q ss_pred eEEecccCChhhhHHHHHH----Hhh----CCCeeEEEcC
Q 027524 4 VKLHGGLLSPFNYRVVCAL----KLK----GIPFELIKED 35 (222)
Q Consensus 4 ~~L~~~~~s~~~~~v~~~l----~~~----gi~~~~~~v~ 35 (222)
|++|+...||||....--| +.. ++.++.+++.
T Consensus 1 I~~~~D~~cP~cyl~~~~l~~~~~~~~~~~~~~v~~~p~~ 40 (201)
T cd03024 1 IDIWSDVVCPWCYIGKRRLEKALAELGDEVDVEIEWRPFE 40 (201)
T ss_pred CeEEecCcCccHHHHHHHHHHHHHhCCCCCceEEEEeeee
Confidence 4688888999999554444 344 4555555553
No 267
>cd02995 PDI_a_PDI_a'_C PDIa family, C-terminal TRX domain (a') subfamily; composed of the C-terminal redox active a' domains of PDI, ERp72, ERp57 (or ERp60) and EFP1. PDI, ERp72 and ERp57 are endoplasmic reticulum (ER)-resident eukaryotic proteins involved in oxidative protein folding. They are oxidases, catalyzing the formation of disulfide bonds of newly synthesized polypeptides in the ER. They also exhibit reductase activity in acting as isomerases to correct any non-native disulfide bonds, as well as chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. PDI and ERp57 have the abb'a' domain structure (where a and a' are redox active TRX domains while b and b' are redox inactive TRX-like domains). PDI also contains an acidic region (c domain) after the a' domain that is absent in ERp57. ERp72 has an additional a domain at the N-terminus (a"abb'a' domain structure). ERp57 interacts with the lectin chaperones, calnexin and calreticu
Probab=22.41 E-value=2.2e+02 Score=18.11 Aligned_cols=51 Identities=8% Similarity=0.001 Sum_probs=28.7
Q ss_pred eEEecccCChhhhHHHHHHHhh-----C-CCeeEEEcCCCCChhHHHhhCCCCCcccEEE
Q 027524 4 VKLHGGLLSPFNYRVVCALKLK-----G-IPFELIKEDLSNKSALLLKYNPVHKKIPVLV 57 (222)
Q Consensus 4 ~~L~~~~~s~~~~~v~~~l~~~-----g-i~~~~~~v~~~~~~~~~~~~~p~~g~vP~L~ 57 (222)
+.+++.++|+.|+...-.++.. + ..+....+|.... +.....+. ..+|++.
T Consensus 22 ~v~f~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~~~id~~~~-~~~~~~~~--~~~Pt~~ 78 (104)
T cd02995 22 LVEFYAPWCGHCKALAPIYEELAEKLKGDDNVVIAKMDATAN-DVPSEFVV--DGFPTIL 78 (104)
T ss_pred EEEEECCCCHHHHHHhhHHHHHHHHhcCCCCEEEEEEeCcch-hhhhhccC--CCCCEEE
Confidence 4567788999999765444332 2 2355556665432 21122232 4799887
No 268
>TIGR01162 purE phosphoribosylaminoimidazole carboxylase, PurE protein. Phosphoribosylaminoimidazole carboxylase is a fusion protein in plants and fungi, but consists of two non-interacting proteins in bacteria, PurK and PurE. This model represents PurK, an N5-CAIR mutase.
Probab=21.98 E-value=1.9e+02 Score=21.19 Aligned_cols=28 Identities=25% Similarity=0.179 Sum_probs=24.0
Q ss_pred cCChhhhHHHHHHHhhCCCeeEEEcCCC
Q 027524 10 LLSPFNYRVVCALKLKGIPFELIKEDLS 37 (222)
Q Consensus 10 ~~s~~~~~v~~~l~~~gi~~~~~~v~~~ 37 (222)
+.-+.++.+...|+..||+|+.......
T Consensus 9 SD~~~~~~a~~~L~~~gi~~dv~V~SaH 36 (156)
T TIGR01162 9 SDLPTMKKAADILEEFGIPYELRVVSAH 36 (156)
T ss_pred hhHHHHHHHHHHHHHcCCCeEEEEECcc
Confidence 4567889999999999999999988765
No 269
>COG1102 Cmk Cytidylate kinase [Nucleotide transport and metabolism]
Probab=21.91 E-value=1.2e+02 Score=22.59 Aligned_cols=28 Identities=11% Similarity=-0.094 Sum_probs=25.6
Q ss_pred eEEecccCChhhhHHHHHHHhhCCCeeE
Q 027524 4 VKLHGGLLSPFNYRVVCALKLKGIPFEL 31 (222)
Q Consensus 4 ~~L~~~~~s~~~~~v~~~l~~~gi~~~~ 31 (222)
+++-|-|+|+-+-.++.+.+..|+++-.
T Consensus 3 ItIsG~pGsG~TTva~~lAe~~gl~~vs 30 (179)
T COG1102 3 ITISGLPGSGKTTVARELAEHLGLKLVS 30 (179)
T ss_pred EEeccCCCCChhHHHHHHHHHhCCceee
Confidence 7888999999999999999999999755
No 270
>PRK14531 adenylate kinase; Provisional
Probab=21.82 E-value=1.4e+02 Score=22.08 Aligned_cols=29 Identities=10% Similarity=0.017 Sum_probs=25.7
Q ss_pred Cc-ceEEecccCChhhhHHHHHHHhhCCCe
Q 027524 1 MA-EVKLHGGLLSPFNYRVVCALKLKGIPF 29 (222)
Q Consensus 1 M~-~~~L~~~~~s~~~~~v~~~l~~~gi~~ 29 (222)
|. .+.+.|.|+|+-+-.++.+.+..|+++
T Consensus 1 ~~~~i~i~G~pGsGKsT~~~~la~~~g~~~ 30 (183)
T PRK14531 1 MKQRLLFLGPPGAGKGTQAARLCAAHGLRH 30 (183)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHhCCCe
Confidence 55 578899999999999999999999876
No 271
>KOG0907 consensus Thioredoxin [Posttranslational modification, protein turnover, chaperones]
Probab=21.74 E-value=2.5e+02 Score=18.90 Aligned_cols=57 Identities=19% Similarity=0.181 Sum_probs=33.4
Q ss_pred ecccCChhhhHHHHHHHhhCCCee---EEEcCCCCChhHHHhhCCCCCcccEEEe--CCeeeeh
Q 027524 7 HGGLLSPFNYRVVCALKLKGIPFE---LIKEDLSNKSALLLKYNPVHKKIPVLVH--GGKPVCE 65 (222)
Q Consensus 7 ~~~~~s~~~~~v~~~l~~~gi~~~---~~~v~~~~~~~~~~~~~p~~g~vP~L~~--~g~~l~e 65 (222)
++..|||.|..+.=.++..-..|. +..+|.+. ..++....-. ..+|++.. +|..+.+
T Consensus 28 F~a~wCgPCk~i~P~~~~La~~y~~v~Flkvdvde-~~~~~~~~~V-~~~PTf~f~k~g~~~~~ 89 (106)
T KOG0907|consen 28 FYATWCGPCKAIAPKFEKLAEKYPDVVFLKVDVDE-LEEVAKEFNV-KAMPTFVFYKGGEEVDE 89 (106)
T ss_pred EECCCCcchhhhhhHHHHHHHHCCCCEEEEEeccc-CHhHHHhcCc-eEeeEEEEEECCEEEEE
Confidence 566789888877655555544443 34455554 4444433333 47998884 6655443
No 272
>PRK14528 adenylate kinase; Provisional
Probab=21.57 E-value=1.4e+02 Score=22.24 Aligned_cols=29 Identities=14% Similarity=0.024 Sum_probs=26.1
Q ss_pred CcceEEecccCChhhhHHHHHHHhhCCCe
Q 027524 1 MAEVKLHGGLLSPFNYRVVCALKLKGIPF 29 (222)
Q Consensus 1 M~~~~L~~~~~s~~~~~v~~~l~~~gi~~ 29 (222)
|..+.+.|.|+|+-+..+..+.+..|+++
T Consensus 1 ~~~i~i~G~pGsGKtt~a~~la~~~~~~~ 29 (186)
T PRK14528 1 MKNIIFMGPPGAGKGTQAKILCERLSIPQ 29 (186)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHhCCCe
Confidence 67788999999999999999999998776
No 273
>COG0429 Predicted hydrolase of the alpha/beta-hydrolase fold [General function prediction only]
Probab=21.33 E-value=2.3e+02 Score=23.74 Aligned_cols=69 Identities=23% Similarity=0.432 Sum_probs=46.0
Q ss_pred EEeccc---CChhhhHHHHHHHhhCCCeeEEEcCCCCChhHHHhhCCCCCcccEEEeCCeeeehhHHHHHHHHhhCCCCC
Q 027524 5 KLHGGL---LSPFNYRVVCALKLKGIPFELIKEDLSNKSALLLKYNPVHKKIPVLVHGGKPVCESMVILEYIEETWPQNP 81 (222)
Q Consensus 5 ~L~~~~---~s~~~~~v~~~l~~~gi~~~~~~v~~~~~~~~~~~~~p~~g~vP~L~~~g~~l~es~aI~~yL~~~~~~~~ 81 (222)
.+||.. .|+|.+...-.+...| |..+-++....+. .| -..|.+-++|.. .|-..++++|-++++..+
T Consensus 80 l~HGL~G~s~s~y~r~L~~~~~~rg--~~~Vv~~~Rgcs~-----~~--n~~p~~yh~G~t-~D~~~~l~~l~~~~~~r~ 149 (345)
T COG0429 80 LFHGLEGSSNSPYARGLMRALSRRG--WLVVVFHFRGCSG-----EA--NTSPRLYHSGET-EDIRFFLDWLKARFPPRP 149 (345)
T ss_pred EEeccCCCCcCHHHHHHHHHHHhcC--CeEEEEecccccC-----Cc--ccCcceecccch-hHHHHHHHHHHHhCCCCc
Confidence 455554 4666666666666677 8888777653221 12 268999998877 777778888888777666
Q ss_pred CC
Q 027524 82 LM 83 (222)
Q Consensus 82 l~ 83 (222)
++
T Consensus 150 ~~ 151 (345)
T COG0429 150 LY 151 (345)
T ss_pred eE
Confidence 54
No 274
>cd03001 PDI_a_P5 PDIa family, P5 subfamily; composed of eukaryotic proteins similar to human P5, a PDI-related protein with a domain structure of aa'b (where a and a' are redox active TRX domains and b is a redox inactive TRX-like domain). Like PDI, P5 is located in the endoplasmic reticulum (ER) and displays both isomerase and chaperone activities, which are independent of each other. Compared to PDI, the isomerase and chaperone activities of P5 are lower. The first cysteine in the CXXC motif of both redox active domains in P5 is necessary for isomerase activity. The P5 gene was first isolated as an amplified gene from a hydroxyurea-resistant hamster cell line. The zebrafish P5 homolog has been implicated to play a critical role in establishing left/right asymmetries in the embryonic midline. Some members of this subfamily are P5-like proteins containing only one redox active TRX domain.
Probab=21.16 E-value=2.3e+02 Score=17.99 Aligned_cols=52 Identities=10% Similarity=-0.031 Sum_probs=28.0
Q ss_pred eEEecccCChhhhHHHHHHHh----hCCCeeEEEcCCCCChhHHHhhCCCCCcccEEE
Q 027524 4 VKLHGGLLSPFNYRVVCALKL----KGIPFELIKEDLSNKSALLLKYNPVHKKIPVLV 57 (222)
Q Consensus 4 ~~L~~~~~s~~~~~v~~~l~~----~gi~~~~~~v~~~~~~~~~~~~~p~~g~vP~L~ 57 (222)
+.+++.++|+.|+...=.+.. ..-.+....++......-....+. ..+|++.
T Consensus 22 lv~f~a~~C~~C~~~~~~~~~~~~~~~~~~~~~~id~~~~~~~~~~~~i--~~~P~~~ 77 (103)
T cd03001 22 LVEFYAPWCGHCKNLAPEWKKAAKALKGIVKVGAVDADVHQSLAQQYGV--RGFPTIK 77 (103)
T ss_pred EEEEECCCCHHHHHHhHHHHHHHHHhcCCceEEEEECcchHHHHHHCCC--CccCEEE
Confidence 445667889999876433322 111244455555443333344455 4699776
No 275
>cd03022 DsbA_HCCA_Iso DsbA family, 2-hydroxychromene-2-carboxylate (HCCA) isomerase subfamily; HCCA isomerase is a glutathione (GSH) dependent enzyme involved in the naphthalene catabolic pathway. It converts HCCA, a hemiketal formed spontaneously after ring cleavage of 1,2-dihydroxynapthalene by a dioxygenase, into cis-o-hydroxybenzylidenepyruvate (cHBPA). This is the fourth reaction in a six-step pathway that converts napthalene into salicylate. HCCA isomerase is unique to bacteria that degrade polycyclic aromatic compounds. It is closely related to the eukaryotic protein, GSH transferase kappa (GSTK).
Probab=21.01 E-value=1.4e+02 Score=21.87 Aligned_cols=32 Identities=13% Similarity=0.075 Sum_probs=21.2
Q ss_pred eEEecccCChhhhHHHH----HHHhhCCCeeEEEcC
Q 027524 4 VKLHGGLLSPFNYRVVC----ALKLKGIPFELIKED 35 (222)
Q Consensus 4 ~~L~~~~~s~~~~~v~~----~l~~~gi~~~~~~v~ 35 (222)
+++|+...||||....- +.+..++.++.+++.
T Consensus 1 i~~~~D~~cP~cy~~~~~l~~~~~~~~~~i~~~p~~ 36 (192)
T cd03022 1 IDFYFDFSSPYSYLAHERLPALAARHGATVRYRPIL 36 (192)
T ss_pred CeEEEeCCChHHHHHHHHHHHHHHHhCCeeEEeeee
Confidence 46788889999986533 333456666666654
No 276
>PF15608 PELOTA_1: PELOTA RNA binding domain
Probab=20.99 E-value=2.1e+02 Score=19.30 Aligned_cols=29 Identities=21% Similarity=0.173 Sum_probs=23.4
Q ss_pred EEecccCChhhhHHHHHHHhhCCCeeEEE
Q 027524 5 KLHGGLLSPFNYRVVCALKLKGIPFELIK 33 (222)
Q Consensus 5 ~L~~~~~s~~~~~v~~~l~~~gi~~~~~~ 33 (222)
.|......|...-++.+++++|||++...
T Consensus 59 vLVr~~~~pd~~Hl~~LA~ekgVpVe~~~ 87 (100)
T PF15608_consen 59 VLVRDPDDPDLAHLLLLAEEKGVPVEVYP 87 (100)
T ss_pred EEECCCCCccHHHHHHHHHHcCCcEEEeC
Confidence 45556677888899999999999988774
No 277
>PF00004 AAA: ATPase family associated with various cellular activities (AAA); InterPro: IPR003959 AAA ATPases (ATPases Associated with diverse cellular Activities) form a large protein family and play a number of roles in the cell including cell-cycle regulation, protein proteolysis and disaggregation, organelle biogenesis and intracellular transport. Some of them function as molecular chaperones, subunits of proteolytic complexes or independent proteases (FtsH, Lon). They also act as DNA helicases and transcription factors []. AAA ATPases belong to the AAA+ superfamily of ringshaped P-loop NTPases, which act via the energy-dependent unfolding of macromolecules [, ]. There are six major clades of AAA domains (proteasome subunits, metalloproteases, domains D1 and D2 of ATPases with two AAA domains, the MSP1/katanin/spastin group and BCS1 and it homologues), as well as a number of deeply branching minor clades []. They assemble into oligomeric assemblies (often hexamers) that form a ring-shaped structure with a central pore. These proteins produce a molecular motor that couples ATP binding and hydrolysis to changes in conformational states that act upon a target substrate, either translocating or remodelling it []. They are found in all living organisms and share the common feature of the presence of a highly conserved AAA domain called the AAA module. This domain is responsible for ATP binding and hydrolysis. It contains 200-250 residues, among them there are two classical motifs, Walker A (GX4GKT) and Walker B (HyDE) []. The functional variety seen between AAA ATPases is in part due to their extensive number of accessory domains and factors, and to their variable organisation within oligomeric assemblies, in addition to changes in key functional residues within the ATPase domain itself. More information about these proteins can be found at Protein of the Month: AAA ATPases [].; GO: 0005524 ATP binding; PDB: 3H4M_A 1NSF_A 1D2N_A 1HQY_E 1DO0_E 1DO2_C 1G4B_E 1HT1_F 1G4A_F 1HT2_G ....
Probab=20.75 E-value=2.2e+02 Score=18.99 Aligned_cols=30 Identities=23% Similarity=0.214 Sum_probs=25.3
Q ss_pred eEEecccCChhhhHHHHHHHhhCCCeeEEE
Q 027524 4 VKLHGGLLSPFNYRVVCALKLKGIPFELIK 33 (222)
Q Consensus 4 ~~L~~~~~s~~~~~v~~~l~~~gi~~~~~~ 33 (222)
+-|+|-++++-+..++.++...|.++-...
T Consensus 1 ill~G~~G~GKT~l~~~la~~l~~~~~~i~ 30 (132)
T PF00004_consen 1 ILLHGPPGTGKTTLARALAQYLGFPFIEID 30 (132)
T ss_dssp EEEESSTTSSHHHHHHHHHHHTTSEEEEEE
T ss_pred CEEECcCCCCeeHHHHHHHhhccccccccc
Confidence 468999999999999999999997764443
No 278
>cd03017 PRX_BCP Peroxiredoxin (PRX) family, Bacterioferritin comigratory protein (BCP) subfamily; composed of thioredoxin-dependent thiol peroxidases, widely expressed in pathogenic bacteria, that protect cells against toxicity from reactive oxygen species by reducing and detoxifying hydroperoxides. The protein was named BCP based on its electrophoretic mobility before its function was known. BCP shows substrate selectivity toward fatty acid hydroperoxides rather than hydrogen peroxide or alkyl hydroperoxides. BCP contains the peroxidatic cysteine but appears not to possess a resolving cysteine (some sequences, not all, contain a second cysteine but its role is still unknown). Unlike other PRXs, BCP exists as a monomer. The plant homolog of BCP is PRX Q, which is expressed only in leaves and is cellularly localized in the chloroplasts and the guard cells of stomata. Also included in this subfamily is the fungal nuclear protein, Dot5p (for disrupter of telomere silencing protein 5), w
Probab=20.19 E-value=1.7e+02 Score=20.13 Aligned_cols=49 Identities=14% Similarity=0.127 Sum_probs=22.7
Q ss_pred cCChhhhHHHHH-----HHhhCCCeeEEEcCCC--CChhHHHhhCCCCCcccEEEeCC
Q 027524 10 LLSPFNYRVVCA-----LKLKGIPFELIKEDLS--NKSALLLKYNPVHKKIPVLVHGG 60 (222)
Q Consensus 10 ~~s~~~~~v~~~-----l~~~gi~~~~~~v~~~--~~~~~~~~~~p~~g~vP~L~~~g 60 (222)
.+||.|....-. -...+-.+.++.|..+ ..-..|.+.... ..|++.+.+
T Consensus 34 ~~cp~C~~~~~~l~~~~~~~~~~~~~vv~is~d~~~~~~~~~~~~~~--~~~~l~D~~ 89 (140)
T cd03017 34 DDTPGCTKEACDFRDLYEEFKALGAVVIGVSPDSVESHAKFAEKYGL--PFPLLSDPD 89 (140)
T ss_pred CCCCchHHHHHHHHHHHHHHHHCCCEEEEEcCCCHHHHHHHHHHhCC--CceEEECCc
Confidence 467877642222 1122223344544433 333344444443 578776644
Done!