Query 027525
Match_columns 222
No_of_seqs 134 out of 917
Neff 8.1
Searched_HMMs 46136
Date Fri Mar 29 11:13:55 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/027525.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/027525hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0859 Synaptobrevin/VAMP-lik 100.0 2.5E-56 5.3E-61 349.7 15.1 203 2-218 3-212 (217)
2 KOG0862 Synaptobrevin/VAMP-lik 100.0 2.9E-45 6.3E-50 292.9 19.6 209 1-214 1-213 (216)
3 KOG0861 SNARE protein YKT6, sy 100.0 3.8E-31 8.2E-36 204.0 13.9 182 2-191 3-193 (198)
4 COG5143 SNC1 Synaptobrevin/VAM 99.9 1.5E-25 3.2E-30 177.2 12.8 183 4-194 3-188 (190)
5 KOG0860 Synaptobrevin/VAMP-lik 99.9 1.3E-24 2.7E-29 158.3 7.6 80 135-214 28-113 (116)
6 PF00957 Synaptobrevin: Synapt 99.9 8.2E-23 1.8E-27 146.0 6.9 83 135-217 2-89 (89)
7 PF13774 Longin: Regulated-SNA 99.8 3.7E-19 8E-24 125.4 9.7 81 36-120 1-82 (83)
8 COG5143 SNC1 Synaptobrevin/VAM 96.9 0.0016 3.5E-08 52.2 5.1 70 137-206 95-169 (190)
9 KOG0810 SNARE protein Syntaxin 96.3 0.0093 2E-07 51.5 6.1 79 136-214 206-288 (297)
10 PF01217 Clat_adaptor_s: Clath 95.9 0.43 9.4E-06 36.4 13.1 95 1-102 1-96 (141)
11 PF03908 Sec20: Sec20; InterP 95.6 0.068 1.5E-06 38.0 7.0 70 141-213 6-88 (92)
12 PF04086 SRP-alpha_N: Signal r 94.7 0.09 2E-06 44.9 6.3 54 51-104 17-72 (279)
13 PF00957 Synaptobrevin: Synapt 94.5 0.19 4.2E-06 35.2 6.5 51 136-186 10-61 (89)
14 COG5074 t-SNARE complex subuni 92.5 0.4 8.6E-06 39.8 6.0 58 137-194 186-247 (280)
15 PF04099 Sybindin: Sybindin-li 91.7 2.5 5.3E-05 32.5 9.4 63 37-101 45-114 (142)
16 PF09426 Nyv1_N: Vacuolar R-SN 91.6 0.25 5.4E-06 37.4 3.5 58 37-95 47-109 (141)
17 PF03904 DUF334: Domain of unk 90.6 1.3 2.7E-05 36.7 7.0 31 118-148 76-109 (230)
18 KOG0811 SNARE protein PEP12/VA 89.2 1.3 2.8E-05 37.8 6.4 59 136-194 180-242 (269)
19 KOG0781 Signal recognition par 87.9 4.1 9E-05 37.6 9.0 88 4-102 5-95 (587)
20 KOG1983 Tomosyn and related SN 83.8 0.51 1.1E-05 47.4 1.3 46 152-197 943-991 (993)
21 PF07798 DUF1640: Protein of u 80.3 9.4 0.0002 30.3 7.2 79 136-214 80-175 (177)
22 PF11166 DUF2951: Protein of u 79.7 12 0.00027 26.6 6.6 27 136-163 28-54 (98)
23 KOG0812 SNARE protein SED5/Syn 78.0 8.3 0.00018 33.1 6.3 75 136-214 227-309 (311)
24 PF09889 DUF2116: Uncharacteri 77.6 4.7 0.0001 26.2 3.8 9 206-214 50-58 (59)
25 KOG3894 SNARE protein Syntaxin 77.2 4.9 0.00011 34.8 4.9 51 117-172 215-268 (316)
26 KOG0938 Adaptor complexes medi 76.5 55 0.0012 29.1 11.8 90 1-102 1-93 (446)
27 KOG3369 Transport protein part 76.4 24 0.00053 28.1 8.1 80 40-127 110-196 (199)
28 KOG3251 Golgi SNAP receptor co 76.2 17 0.00037 29.9 7.5 60 153-212 135-208 (213)
29 KOG0860 Synaptobrevin/VAMP-lik 75.5 11 0.00023 28.0 5.6 32 163-194 63-97 (116)
30 PF09753 Use1: Membrane fusion 75.0 5.3 0.00011 33.6 4.5 10 89-98 113-122 (251)
31 PF09753 Use1: Membrane fusion 74.2 9.6 0.00021 32.0 5.9 16 178-193 206-222 (251)
32 PRK01026 tetrahydromethanopter 71.2 9.9 0.00022 26.0 4.2 42 164-207 22-65 (77)
33 TIGR01149 mtrG N5-methyltetrah 69.9 9.4 0.0002 25.5 3.8 37 164-202 19-57 (70)
34 PF04210 MtrG: Tetrahydrometha 68.9 16 0.00034 24.5 4.7 44 163-208 18-63 (70)
35 KOG1666 V-SNARE [Intracellular 67.2 20 0.00044 29.5 6.0 40 163-202 159-204 (220)
36 PF04799 Fzo_mitofusin: fzo-li 65.7 11 0.00023 30.0 4.1 47 137-183 110-156 (171)
37 KOG3368 Transport protein part 65.5 58 0.0013 24.8 7.9 57 37-96 45-102 (140)
38 COG1422 Predicted membrane pro 64.4 21 0.00046 29.1 5.6 72 136-220 72-148 (201)
39 COG5074 t-SNARE complex subuni 62.6 12 0.00026 31.3 4.0 55 137-194 196-251 (280)
40 TIGR00060 L18_bact ribosomal p 61.8 35 0.00075 25.3 6.0 60 3-64 36-97 (114)
41 PF03164 Mon1: Trafficking pro 61.8 98 0.0021 28.1 10.1 66 35-103 39-105 (415)
42 KOG3385 V-SNARE [Intracellular 61.4 17 0.00038 26.9 4.2 19 135-153 35-53 (118)
43 PF11657 Activator-TraM: Trans 60.9 75 0.0016 24.5 9.9 44 77-130 19-63 (144)
44 COG5122 TRS23 Transport protei 60.7 66 0.0014 23.8 8.9 84 39-126 45-131 (134)
45 PF05478 Prominin: Prominin; 60.1 49 0.0011 32.8 8.4 8 195-202 413-420 (806)
46 PF03908 Sec20: Sec20; InterP 57.7 33 0.00072 24.0 5.1 74 137-212 9-90 (92)
47 COG5325 t-SNARE complex subuni 57.0 50 0.0011 28.3 6.8 42 136-177 195-236 (283)
48 PF01099 Uteroglobin: Uteroglo 53.3 33 0.00072 22.5 4.3 43 120-162 17-60 (67)
49 PRK10884 SH3 domain-containing 53.1 70 0.0015 26.2 7.0 44 137-183 108-151 (206)
50 PRK12430 putative bifunctional 50.5 24 0.00053 31.5 4.1 38 165-202 102-141 (379)
51 KOG1693 emp24/gp25L/p24 family 50.1 62 0.0013 26.4 6.0 56 163-218 144-203 (209)
52 KOG3156 Uncharacterized membra 49.7 42 0.0009 27.6 5.0 35 136-171 123-157 (220)
53 PF10717 ODV-E18: Occlusion-de 48.4 20 0.00044 24.9 2.6 17 202-218 34-50 (85)
54 PRK05593 rplR 50S ribosomal pr 48.3 67 0.0015 23.8 5.6 60 3-64 36-100 (117)
55 KOG3202 SNARE protein TLG1/Syn 48.1 1.1E+02 0.0025 25.6 7.6 58 136-193 137-200 (235)
56 PF12352 V-SNARE_C: Snare regi 46.1 41 0.00088 21.7 3.8 47 135-181 7-53 (66)
57 smart00096 UTG Uteroglobin. 46.0 57 0.0012 21.9 4.5 41 122-162 21-62 (69)
58 PF01105 EMP24_GP25L: emp24/gp 45.1 7.1 0.00015 30.2 0.0 28 167-194 129-157 (183)
59 cd07912 Tweety_N N-terminal do 44.5 2.2E+02 0.0048 26.0 9.4 39 117-157 106-144 (418)
60 KOG2635 Medium subunit of clat 43.8 2.7E+02 0.0058 25.8 11.3 44 51-95 44-87 (512)
61 PHA03240 envelope glycoprotein 43.0 21 0.00045 29.5 2.3 18 197-214 216-233 (258)
62 PHA02650 hypothetical protein; 42.8 50 0.0011 22.7 3.8 16 187-202 42-57 (81)
63 COG4499 Predicted membrane pro 42.6 34 0.00074 30.8 3.8 52 163-214 184-240 (434)
64 KOG2678 Predicted membrane pro 41.8 45 0.00096 27.7 4.1 43 172-215 195-240 (244)
65 PF06008 Laminin_I: Laminin Do 41.0 1.5E+02 0.0033 24.8 7.6 44 136-179 192-235 (264)
66 PF01601 Corona_S2: Coronaviru 40.9 14 0.0003 35.0 1.2 14 117-130 481-494 (610)
67 cd00633 Secretoglobin Secretog 40.9 75 0.0016 20.7 4.5 43 120-162 17-60 (67)
68 PF11337 DUF3139: Protein of u 40.3 34 0.00074 23.6 2.9 10 208-217 19-28 (85)
69 PHA02690 hypothetical protein; 38.5 1.3E+02 0.0029 20.7 5.9 14 181-194 28-42 (90)
70 PF13800 Sigma_reg_N: Sigma fa 38.4 51 0.0011 23.2 3.6 17 187-203 6-23 (96)
71 PF05739 SNARE: SNARE domain; 37.9 92 0.002 19.6 4.5 43 136-178 4-46 (63)
72 CHL00139 rpl18 ribosomal prote 37.0 1.3E+02 0.0028 22.0 5.6 60 3-64 27-92 (109)
73 PF10779 XhlA: Haemolysin XhlA 36.7 1.3E+02 0.0027 20.0 5.5 31 163-193 19-50 (71)
74 COG5346 Predicted membrane pro 35.7 1.9E+02 0.0041 21.8 6.2 28 127-154 45-74 (136)
75 KOG1666 V-SNARE [Intracellular 35.5 2.6E+02 0.0055 23.2 7.7 78 137-214 136-219 (220)
76 PF08923 MAPKK1_Int: Mitogen-a 35.4 1.8E+02 0.004 21.5 11.4 91 5-98 19-112 (119)
77 COG1459 PulF Type II secretory 35.0 1.6E+02 0.0034 26.7 7.0 88 118-214 93-183 (397)
78 TIGR03745 conj_TIGR03745 integ 32.3 33 0.00071 24.9 1.8 24 191-214 73-98 (104)
79 PF15188 CCDC-167: Coiled-coil 32.2 85 0.0018 22.0 3.7 46 166-211 38-84 (85)
80 PF06837 Fijivirus_P9-2: Fijiv 32.0 1.1E+02 0.0023 24.8 4.7 38 142-179 22-61 (214)
81 PHA02844 putative transmembran 30.5 67 0.0015 21.8 2.9 8 194-201 48-55 (75)
82 KOG3230 Vacuolar assembly/sort 30.3 80 0.0017 25.7 3.8 26 142-167 132-157 (224)
83 PF11190 DUF2976: Protein of u 30.3 40 0.00087 23.7 1.9 24 190-213 56-81 (87)
84 PF12277 DUF3618: Protein of u 30.0 1.4E+02 0.003 18.3 4.1 41 138-178 5-45 (49)
85 PHA01811 hypothetical protein 29.4 65 0.0014 21.2 2.6 20 51-70 4-23 (78)
86 PF04628 Sedlin_N: Sedlin, N-t 29.2 2.4E+02 0.0052 20.9 8.2 91 6-101 1-106 (132)
87 TIGR01478 STEVOR variant surfa 28.4 24 0.00051 30.4 0.5 12 119-130 57-68 (295)
88 KOG2740 Clathrin-associated pr 28.2 3E+02 0.0066 24.7 7.3 35 67-102 61-96 (418)
89 PRK10573 type IV pilin biogene 27.9 4.3E+02 0.0094 23.4 8.8 20 1-20 4-23 (399)
90 PF06825 HSBP1: Heat shock fac 27.5 55 0.0012 20.8 2.0 18 163-180 34-51 (54)
91 PF13228 DUF4037: Domain of un 27.4 1.9E+02 0.0041 20.6 5.1 42 136-177 39-80 (100)
92 PHA03054 IMV membrane protein; 27.2 85 0.0018 21.1 2.9 8 194-201 48-55 (72)
93 KOG4827 Uncharacterized conser 26.9 36 0.00077 27.8 1.3 20 189-208 237-258 (279)
94 PHA02819 hypothetical protein; 26.5 89 0.0019 21.0 2.9 8 194-201 46-53 (71)
95 KOG0972 Huntingtin interacting 26.4 95 0.0021 27.0 3.8 37 87-130 246-283 (384)
96 PTZ00370 STEVOR; Provisional 25.7 29 0.00063 29.9 0.6 20 136-155 102-121 (296)
97 PF08006 DUF1700: Protein of u 25.4 3.1E+02 0.0067 21.4 6.5 13 89-101 5-17 (181)
98 PF04079 DUF387: Putative tran 25.1 90 0.0019 24.4 3.2 81 83-163 25-121 (159)
99 PHA03011 hypothetical protein; 25.1 1.2E+02 0.0027 21.9 3.6 58 117-176 61-118 (120)
100 PF04906 Tweety: Tweety; Inte 25.0 4.9E+02 0.011 23.5 8.4 10 195-204 185-194 (406)
101 PTZ00032 60S ribosomal protein 25.0 2.4E+02 0.0053 23.1 5.7 60 3-64 117-194 (211)
102 PF05659 RPW8: Arabidopsis bro 24.9 1.1E+02 0.0024 23.6 3.7 50 117-166 31-81 (147)
103 COG4064 MtrG Tetrahydromethano 24.9 2E+02 0.0043 19.4 4.3 16 163-178 21-36 (75)
104 PF07439 DUF1515: Protein of u 24.3 2.9E+02 0.0063 20.3 5.5 16 147-162 33-48 (112)
105 PF01788 PsbJ: PsbJ; InterPro 24.3 1.2E+02 0.0027 17.9 2.9 22 196-217 10-31 (40)
106 PTZ00478 Sec superfamily; Prov 24.2 84 0.0018 21.8 2.5 43 160-202 10-54 (81)
107 smart00397 t_SNARE Helical reg 23.8 1.9E+02 0.0041 17.8 4.3 44 136-179 12-55 (66)
108 KOG0809 SNARE protein TLG2/Syn 23.7 1.1E+02 0.0024 26.5 3.8 39 136-174 218-256 (305)
109 PF15202 Adipogenin: Adipogeni 23.7 1.1E+02 0.0024 20.4 2.9 10 206-215 30-39 (81)
110 PF15469 Sec5: Exocyst complex 23.6 3.2E+02 0.0069 21.3 6.3 59 136-194 40-98 (182)
111 PF06103 DUF948: Bacterial pro 23.6 1.6E+02 0.0034 20.2 4.0 15 164-178 68-82 (90)
112 TIGR01478 STEVOR variant surfa 23.5 71 0.0015 27.5 2.5 11 203-213 273-283 (295)
113 PF12579 DUF3755: Protein of u 23.1 54 0.0012 18.9 1.2 19 135-153 16-34 (35)
114 PHA03386 P10 fibrous body prot 23.1 1E+02 0.0022 21.9 2.9 15 136-150 19-33 (94)
115 PRK14750 kdpF potassium-transp 23.0 1.3E+02 0.0027 16.5 2.5 15 199-213 6-20 (29)
116 KOG0810 SNARE protein Syntaxin 22.5 73 0.0016 27.7 2.5 40 148-190 231-271 (297)
117 cd00193 t_SNARE Soluble NSF (N 22.5 1.9E+02 0.0041 17.5 4.4 43 136-178 6-48 (60)
118 PRK11546 zraP zinc resistance 22.3 1.5E+02 0.0031 22.9 3.8 20 133-152 86-105 (143)
119 PTZ00370 STEVOR; Provisional 22.2 79 0.0017 27.3 2.5 11 203-213 269-279 (296)
120 PF10883 DUF2681: Protein of u 21.5 1E+02 0.0022 21.7 2.6 9 206-214 15-23 (87)
121 PF06103 DUF948: Bacterial pro 21.1 2.3E+02 0.005 19.4 4.5 12 138-149 35-46 (90)
122 PF02520 DUF148: Domain of unk 20.9 2.2E+02 0.0048 20.4 4.5 43 117-162 20-62 (113)
123 PHA02975 hypothetical protein; 20.7 1.2E+02 0.0027 20.2 2.7 13 190-202 40-52 (69)
124 PF09832 DUF2059: Uncharacteri 20.7 2.2E+02 0.0047 18.0 4.0 24 120-144 20-43 (64)
125 PRK05529 cell division protein 20.1 75 0.0016 26.8 2.0 10 207-216 49-58 (255)
No 1
>KOG0859 consensus Synaptobrevin/VAMP-like protein [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=2.5e-56 Score=349.72 Aligned_cols=203 Identities=20% Similarity=0.319 Sum_probs=184.3
Q ss_pred cEEEEEEEecCCeeeeeeccCCCCCCCChhHHHHHHHHHHHHcCCCCCCCCceEEEEcCeEEEEEeeCCcEEEEEEeCCC
Q 027525 2 VKMTIVGRVSDGLPLARGPRYLNQEHDSFSFYKQQAEFILKEISRGALAPSKMTIRVDHHSFHYLMENGIGCFITLCDSS 81 (222)
Q Consensus 2 I~y~~IaR~~d~~iLae~~~~~~~~~~~~~~~~~~a~~il~~i~~~~~~~~k~s~~~~~~~~h~l~~~~~~~~~cvtd~~ 81 (222)
|+|+.||| |.+|||||++ .+|||. .++..+|+++|+++ ++|.+|..|+|+|||+++|| ++|+|++|++
T Consensus 3 iiYs~VAR--GTvvLaeft~----~~gNf~---sva~qiL~klp~~~--n~k~tYs~d~y~Fh~l~~dg-~tylcvadds 70 (217)
T KOG0859|consen 3 IIYSFVAR--GTVILAEFTE----FSGNFS---SIAAQILQKLPSSS--NSKFTYSCDGYTFHYLVEDG-LTYLCVADDS 70 (217)
T ss_pred eeEEEEec--ceEEEEeeee----ccCCHH---HHHHHHHHhCCCCC--CCceEEecCCeEEEEEEeCC-eEEEEEEecc
Confidence 79999999 9999999998 699999 69999999999986 77999999999999999999 9999999999
Q ss_pred CChHHHHHHHHHHHHHH-hcchhhhhcccCCCcccc-cchHHHHHHHHhccCchhhhhHHHHHhhhccchhHHHHhHHHH
Q 027525 82 YPRKLAFHYLQDLQKEF-QKFDISLIDKITRPYSCV-KFESIIGNIRKQYVDTRTQANLSKLNANRGQDLDIVIEHMYQI 159 (222)
Q Consensus 82 ~p~~~af~fL~ei~~~F-~~~~~~~~~~~~~~~~~~-~f~~~l~~~~~~yn~~~~~dkl~~i~~~v~~vk~im~~Ni~~i 159 (222)
.++++||.||++|+++| +.|+.. ...+.+|+++ +|++.|++.|+.|.+.++.|++++++.||+|+|+||.+||||+
T Consensus 71 ~gR~ipfaFLe~Ik~~F~k~YG~~--a~ta~AysmN~EFs~vL~qqm~y~s~~p~id~lskvkaqv~evk~vM~eNIekv 148 (217)
T KOG0859|consen 71 AGRQIPFAFLERIKEDFKKRYGGG--AHTAVAYSMNKEFSSVLKQQMQYCSEHPEISKLAKVKAQVTEVKGVMMENIEKV 148 (217)
T ss_pred ccccccHHHHHHHHHHHHHHhccc--hhHHHHhHhHHHHHHHHHHHHHHHHcCcchhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999 999863 4456889998 9999999999999766668999999999999999999999999
Q ss_pred HHchhchHHHHHHHHHHHhhcccc-CCchHHHHHHH----hhhHHHHHHHHHHHHHHHHHhcCC
Q 027525 160 VERKRQSEISEEILTATRKHVSSI-WGSPRLEVIAL----KWTPIAIIVAVAAILLWANLVLTD 218 (222)
Q Consensus 160 l~Rge~le~L~~kt~~L~~~s~~F-~~a~kl~r~~w----K~~~i~~~~~~~~~~i~~~~~~~~ 218 (222)
|+|||+||.|+|||++|+.++..| +++++++|+|| |++.+++.++++++.|-..++|||
T Consensus 149 ldRGekiELLVdKTenl~~~s~~fr~q~r~~~r~mw~~n~kl~~iv~~~~~~~iyiiv~~~CgG 212 (217)
T KOG0859|consen 149 LDRGEKIELLVDKTENLRSKSFDFRTQGRKLRRKMWFQNMKLKLIVLGVSISLIYIIVARRCGG 212 (217)
T ss_pred HhccCeEEeeechhhhhhhhhHHHHHHHHHHHHHHHHhccceehhhhhHHHHHHHHHHHHhccC
Confidence 999999999999999999999999 99999999999 666666555555554444457877
No 2
>KOG0862 consensus Synaptobrevin/VAMP-like protein SEC22 [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=2.9e-45 Score=292.86 Aligned_cols=209 Identities=31% Similarity=0.608 Sum_probs=188.4
Q ss_pred CcEEEEEEEecCCeeeeeeccCCCCCCCChhHHHHHHHHHHHHcCCCCCCCCceEEEEcCeEEEEEeeCCcEEEEEEeCC
Q 027525 1 MVKMTIVGRVSDGLPLARGPRYLNQEHDSFSFYKQQAEFILKEISRGALAPSKMTIRVDHHSFHYLMENGIGCFITLCDS 80 (222)
Q Consensus 1 mI~y~~IaR~~d~~iLae~~~~~~~~~~~~~~~~~~a~~il~~i~~~~~~~~k~s~~~~~~~~h~l~~~~~~~~~cvtd~ 80 (222)
||++++|+|+.||+|||..++++-+.++++.++|+.++.+.+++.+.+ ++++|.+.|.|+|||++++| +||+|+||.
T Consensus 1 mi~~T~I~RV~DGLPLa~s~d~~e~~~~s~~e~r~q~K~L~kkLs~~s--~~r~Sietg~f~fHfli~~~-Vcylvicd~ 77 (216)
T KOG0862|consen 1 MILLTLIARVRDGLPLAASTDDNEQSGDSLLEYRQQAKSLFKKLSQQS--PTRCSIETGPFVFHFLIESG-VCYLVICDK 77 (216)
T ss_pred CceeEEEEEecCCcccccccCcccCCCchHHHHHHHHHHHHHhccCCC--CcccccccCCeEEEEEecCC-EEEEEEecC
Confidence 899999999999999999988522244556899999999999999987 89999999999999999999 999999999
Q ss_pred CCChHHHHHHHHHHHHHH-hcchhhhhcccCCCcccccchHHHHHHHHhccCchhhhhHHHHHhhhccchhHHHHhHHHH
Q 027525 81 SYPRKLAFHYLQDLQKEF-QKFDISLIDKITRPYSCVKFESIIGNIRKQYVDTRTQANLSKLNANRGQDLDIVIEHMYQI 159 (222)
Q Consensus 81 ~~p~~~af~fL~ei~~~F-~~~~~~~~~~~~~~~~~~~f~~~l~~~~~~yn~~~~~dkl~~i~~~v~~vk~im~~Ni~~i 159 (222)
.||+++||+||+++.++| +.|+........|||+|.+|+++|++..++|||+++.+++.++.+++.+|+.+|.+||+.+
T Consensus 78 ~yP~kLAF~YLedL~~EF~~~~~~~~~~~~~RPY~FieFD~~IQk~Kk~ynd~r~~~n~~~~n~el~~v~~im~~niedv 157 (216)
T KOG0862|consen 78 SYPRKLAFSYLEDLAQEFDKSYGKNIIQPASRPYAFIEFDTFIQKTKKRYNDTRSQRNLLKLNQELQDVQRIMVENLEDV 157 (216)
T ss_pred CCcHHHHHHHHHHHHHHHHHhcccccCCccCCCeeEEehhHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHHHhHHHH
Confidence 999999999999999999 9998755555789999999999999999999999999999999999999999999999999
Q ss_pred HHchhchHHHHHHHHHHHhhcccc-CCchHHHHHH-H-hhhHHHHHHHHHHHHHHHHH
Q 027525 160 VERKRQSEISEEILTATRKHVSSI-WGSPRLEVIA-L-KWTPIAIIVAVAAILLWANL 214 (222)
Q Consensus 160 l~Rge~le~L~~kt~~L~~~s~~F-~~a~kl~r~~-w-K~~~i~~~~~~~~~~i~~~~ 214 (222)
+.|||.|+.|..++.+|+..|+.. ++|+.++++. | ||+.+... ..++++|++|
T Consensus 158 l~rg~~l~~l~~~~s~l~~~s~~y~~~a~~in~~sl~~~~aa~~~~--~~~l~f~~~f 213 (216)
T KOG0862|consen 158 LQRGEVLNALSSMASELSSESRKYPKTAKGINRKSLIRKYAAYVVF--FVLLLFYVRF 213 (216)
T ss_pred HhhchHHHhhhhhhhcccHHHHhhHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHH
Confidence 999999999999999999999999 9999999977 5 88843333 3334456666
No 3
>KOG0861 consensus SNARE protein YKT6, synaptobrevin/VAMP syperfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.97 E-value=3.8e-31 Score=203.98 Aligned_cols=182 Identities=13% Similarity=0.163 Sum_probs=146.0
Q ss_pred cEEEEEEEe--cCCeeeeeeccCCC---CCCCChhH-HHHHHHHHHHHcCCCCCCCCceEEEEcCeEEEEEe-eCCcEEE
Q 027525 2 VKMTIVGRV--SDGLPLARGPRYLN---QEHDSFSF-YKQQAEFILKEISRGALAPSKMTIRVDHHSFHYLM-ENGIGCF 74 (222)
Q Consensus 2 I~y~~IaR~--~d~~iLae~~~~~~---~~~~~~~~-~~~~a~~il~~i~~~~~~~~k~s~~~~~~~~h~l~-~~~~~~~ 74 (222)
|.+..|-+. ++..+|+..++.++ =..++..| +--+++.+.++.+| .+|+++++++|.+|... .+| +++
T Consensus 3 i~sl~V~~~~~~~~~ll~~a~dls~FsfFqRssV~Efm~F~sktvaeRt~~----g~rqsvk~~~Y~~h~yvrndg-L~~ 77 (198)
T KOG0861|consen 3 IYSLSVLHKGTSDVKLLKTASDLSSFSFFQRSSVQEFMTFISKTVAERTGP----GQRQSVKHEEYLVHVYVRNDG-LCG 77 (198)
T ss_pred eEEEEEEeeCCcchhhhhhhcccccccceeeccHHHHHHHHHHHHHHhcCc----ccccccccceeEEEEEEecCC-eeE
Confidence 344455554 46677777665421 02333332 22568999999998 58999999999999655 458 999
Q ss_pred EEEeCCCCChHHHHHHHHHHHHHH-hcchhhhhcccCCCcccccchHHHHHHHHhccCchhhhhHHHHHhhhccchhHHH
Q 027525 75 ITLCDSSYPRKLAFHYLQDLQKEF-QKFDISLIDKITRPYSCVKFESIIGNIRKQYVDTRTQANLSKLNANRGQDLDIVI 153 (222)
Q Consensus 75 ~cvtd~~~p~~~af~fL~ei~~~F-~~~~~~~~~~~~~~~~~~~f~~~l~~~~~~yn~~~~~dkl~~i~~~v~~vk~im~ 153 (222)
++++|.+||.|+||.+|.++.++| ...+.. .|... ..+-..| |.|+....+|+||.+.|+|.++|+++||||.||+
T Consensus 78 V~~~D~eYP~rvA~tLL~kvld~~~~k~~~~-~W~~~-~~~~~~~-~~L~~~l~kyqdP~ead~l~kvQ~EldETKiiLh 154 (198)
T KOG0861|consen 78 VLIADDEYPVRVAFTLLNKVLDEFTTKVPAT-QWPVG-ETADLSY-PYLDTLLSKYQDPAEADPLLKVQNELDETKIILH 154 (198)
T ss_pred EEEecCcCchhHHHHHHHHHHHHHhhcCccc-ccCcC-CCcCCCc-hhHHHHHHHhcChhhhChHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999 665542 34332 2222355 7899999999999999999999999999999999
Q ss_pred HhHHHHHHchhchHHHHHHHHHHHhhcccc-CCchHHHH
Q 027525 154 EHMYQIVERKRQSEISEEILTATRKHVSSI-WGSPRLEV 191 (222)
Q Consensus 154 ~Ni~~il~Rge~le~L~~kt~~L~~~s~~F-~~a~kl~r 191 (222)
++|+.+|+|||+||+|++||++|+.+|+.| ++|+|.++
T Consensus 155 kTiesVL~RgEKLDdLV~KSe~Ls~qSKmfYKsAKK~Ns 193 (198)
T KOG0861|consen 155 KTIESVLERGEKLDDLVSKSENLSLQSKMFYKSAKKTNS 193 (198)
T ss_pred HHHHHHHHccchHHHHHHHHHhhhHHHHHHHHHHhhcCC
Confidence 999999999999999999999999999999 99998663
No 4
>COG5143 SNC1 Synaptobrevin/VAMP-like protein [Intracellular trafficking and secretion]
Probab=99.93 E-value=1.5e-25 Score=177.19 Aligned_cols=183 Identities=20% Similarity=0.298 Sum_probs=148.6
Q ss_pred EEEEEEecCCeeeeeeccCCCCCCCChhHHHHHHHHHHHHcCCCCCCCCceEEEEcCeEEEEEee-CCcEEEEEEeCCCC
Q 027525 4 MTIVGRVSDGLPLARGPRYLNQEHDSFSFYKQQAEFILKEISRGALAPSKMTIRVDHHSFHYLME-NGIGCFITLCDSSY 82 (222)
Q Consensus 4 y~~IaR~~d~~iLae~~~~~~~~~~~~~~~~~~a~~il~~i~~~~~~~~k~s~~~~~~~~h~l~~-~~~~~~~cvtd~~~ 82 (222)
++.+-|. ++.+++..++.....+..|- -+..+..+|.++.|.. .++.+++.++|.|||.-. +| ++|+|+|+.+|
T Consensus 3 s~~~~~~-~~~~~~~~~~~~s~~~~~ff-~~~~v~~~l~~~~~~~--a~~~~ies~~~~~~~~~~s~g-i~y~~~~~~e~ 77 (190)
T COG5143 3 SISLFRV-KGEPLRTLSDAESLSSFSFF-HRSKVKEVLRFLSKTS--ASRASIESGDYFFHYLKMSSG-IVYVPISDKEY 77 (190)
T ss_pred eEEEEee-cCCcceeeccccccCccccc-ccchHHHHHHHhcccc--cchhccccCceEEEEEecCCC-ceeEEeccccc
Confidence 4455564 56666666554211222332 2466788888877754 568889999999998765 48 99999999999
Q ss_pred ChHHHHHHHHHHHHHH-hcchhhhhcccCCCcccccchHHHHHHHHhccCchhhhhHHHHHhhhccchhHHHHhHHHHHH
Q 027525 83 PRKLAFHYLQDLQKEF-QKFDISLIDKITRPYSCVKFESIIGNIRKQYVDTRTQANLSKLNANRGQDLDIVIEHMYQIVE 161 (222)
Q Consensus 83 p~~~af~fL~ei~~~F-~~~~~~~~~~~~~~~~~~~f~~~l~~~~~~yn~~~~~dkl~~i~~~v~~vk~im~~Ni~~il~ 161 (222)
|+++|++.++++..+| .++.......+..++.+.+|++++++ .|++|...|++.+++.++++||.+|.+||+++|+
T Consensus 78 p~~la~~~~~~~~~~~~~s~~~~~~~d~~~~~~~~~~d~~~e~---~y~d~s~~D~~d~l~~el~e~K~~l~k~ie~~l~ 154 (190)
T COG5143 78 PNKLAYGYLNSIATEFLKSSALEQLIDDTVGIMRVNIDKVIEK---GYRDPSIQDKLDQLQQELEETKRVLNKNIEKVLY 154 (190)
T ss_pred chhhhhHHHHhhccHhhhhhhHhhcccCccchhhhhHHHHHHh---hcCCchhhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999 77765444444456666688888887 3999999999999999999999999999999999
Q ss_pred chhchHHHHHHHHHHHhhcccc-CCchHHHHHHH
Q 027525 162 RKRQSEISEEILTATRKHVSSI-WGSPRLEVIAL 194 (222)
Q Consensus 162 Rge~le~L~~kt~~L~~~s~~F-~~a~kl~r~~w 194 (222)
|||+|+.|+++|+.|...|+.| +.|++.+..+|
T Consensus 155 R~ekl~~lv~~ss~L~~~s~~~~k~akk~n~~~~ 188 (190)
T COG5143 155 RDEKLDLLVDLSSILLLSSKMFPKSAKKSNLCCL 188 (190)
T ss_pred ccchHHHHHHHHHHHHHHHHHHHHHHHHhhhhhe
Confidence 9999999999999999999999 99999998886
No 5
>KOG0860 consensus Synaptobrevin/VAMP-like protein [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.91 E-value=1.3e-24 Score=158.26 Aligned_cols=80 Identities=15% Similarity=0.177 Sum_probs=70.4
Q ss_pred hhhHHHHHhhhccchhHHHHhHHHHHHchhchHHHHHHHHHHHhhcccc-CCchHHHHHHH----hhhHHHHHHHHHHH-
Q 027525 135 QANLSKLNANRGQDLDIVIEHMYQIVERKRQSEISEEILTATRKHVSSI-WGSPRLEVIAL----KWTPIAIIVAVAAI- 208 (222)
Q Consensus 135 ~dkl~~i~~~v~~vk~im~~Ni~~il~Rge~le~L~~kt~~L~~~s~~F-~~a~kl~r~~w----K~~~i~~~~~~~~~- 208 (222)
++++.++|+||++|++||++||+|+|||||||++|++||+.|+..|..| ++|.++||+|| ||..++++++++++
T Consensus 28 ~~k~~~tq~QvdeVv~IMr~NV~KVlER~ekL~~L~drad~L~~~as~F~~~A~klkrk~wWkn~Km~~il~~v~~i~l~ 107 (116)
T KOG0860|consen 28 NDKLQQTQAQVDEVVDIMRENVEKVLERGEKLDELDDRADQLQAGASQFEKTAVKLKRKMWWKNCKMRIILGLVIIILLV 107 (116)
T ss_pred hHHHHHHHHHHHHHHHHHHHhHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5899999999999999999999999999999999999999999999999 99999999998 77777776555444
Q ss_pred HHHHHH
Q 027525 209 LLWANL 214 (222)
Q Consensus 209 ~i~~~~ 214 (222)
++.+.+
T Consensus 108 iiii~~ 113 (116)
T KOG0860|consen 108 VIIIYI 113 (116)
T ss_pred HHHHHH
Confidence 333333
No 6
>PF00957 Synaptobrevin: Synaptobrevin; InterPro: IPR001388 Synaptobrevin is an intrinsic membrane protein of small synaptic vesicles [], specialised secretory organelles of neurons that actively accumulate neurotransmitters and participate in their calcium-dependent release by exocytosis. Vesicle function is mediated by proteins in their membranes, although the precise nature of the protein-protein interactions underlying this are still uncertain []. Synaptobrevin may play a role in the molecular events underlying neurotransmitter release and vesicle recycling and may be involved in the regulation of membrane flow in the nerve terminal, a process mediated by interaction with low molecular weight GTP-binding proteins []. Synaptic vesicle-associated membrane proteins (VAMPs) from Torpedo californica (Pacific electric ray) and SNC1 from yeast are related to synaptobrevin.; GO: 0016192 vesicle-mediated transport, 0016021 integral to membrane; PDB: 3EGX_C 2NUP_C 3EGD_C 2NUT_C 1IOU_A 1H8M_A 3B5N_A 3ZYM_A 2NPS_A 1SFC_E ....
Probab=99.88 E-value=8.2e-23 Score=145.96 Aligned_cols=83 Identities=13% Similarity=0.217 Sum_probs=68.0
Q ss_pred hhhHHHHHhhhccchhHHHHhHHHHHHchhchHHHHHHHHHHHhhcccc-CCchHHHHHHH--hhhHHHHHHHHHHHHHH
Q 027525 135 QANLSKLNANRGQDLDIVIEHMYQIVERKRQSEISEEILTATRKHVSSI-WGSPRLEVIAL--KWTPIAIIVAVAAILLW 211 (222)
Q Consensus 135 ~dkl~~i~~~v~~vk~im~~Ni~~il~Rge~le~L~~kt~~L~~~s~~F-~~a~kl~r~~w--K~~~i~~~~~~~~~~i~ 211 (222)
+|++.++++++++|+++|.+||+++++|||+||+|+++|++|+.+|..| ++|++++|+|| +++..++++++++++++
T Consensus 2 ~dkl~~i~~~v~~v~~im~~Ni~~ll~Rge~L~~L~~kt~~L~~~a~~F~k~a~~l~r~~~~~~~k~~~i~~~iv~~~~~ 81 (89)
T PF00957_consen 2 NDKLEQIQEQVEEVKNIMRENIDKLLERGEKLEELEDKTEELSDNAKQFKKNAKKLKRKMWWRNYKLYIIIIIIVIIIIL 81 (89)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHcCchHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhHHhhhhhhhh
Confidence 4899999999999999999999999999999999999999999999999 99999999997 44444444444444444
Q ss_pred HHH--hcC
Q 027525 212 ANL--VLT 217 (222)
Q Consensus 212 ~~~--~~~ 217 (222)
+.+ +||
T Consensus 82 ~i~~~~~g 89 (89)
T PF00957_consen 82 IIIIVICG 89 (89)
T ss_dssp HHHHTT--
T ss_pred HHHHHHhC
Confidence 433 555
No 7
>PF13774 Longin: Regulated-SNARE-like domain; PDB: 1IOU_A 3BW6_A 1H8M_A 3EGX_C 2NUP_C 3EGD_C 2NUT_C 3KYQ_A 1IFQ_B 2VX8_D ....
Probab=99.80 E-value=3.7e-19 Score=125.36 Aligned_cols=81 Identities=38% Similarity=0.706 Sum_probs=69.2
Q ss_pred HHHHHHHHcCCCCCCCCceEEEEcCeEEEEEeeCCcEEEEEEeCCCCChHHHHHHHHHHHHHH-hcchhhhhcccCCCcc
Q 027525 36 QAEFILKEISRGALAPSKMTIRVDHHSFHYLMENGIGCFITLCDSSYPRKLAFHYLQDLQKEF-QKFDISLIDKITRPYS 114 (222)
Q Consensus 36 ~a~~il~~i~~~~~~~~k~s~~~~~~~~h~l~~~~~~~~~cvtd~~~p~~~af~fL~ei~~~F-~~~~~~~~~~~~~~~~ 114 (222)
+|+.||++++++. ++|.+++.++|.||+++++| ++|+|+||++||+++||.||++|+++| ++|+...+. .+.||+
T Consensus 1 ~a~~il~~i~~~~--~~k~s~~~~~~~fh~~~~~~-i~~~citd~~~~~r~aF~fL~~i~~~F~~~~~~~~~~-~a~~~~ 76 (83)
T PF13774_consen 1 QARKILKRIPPNG--NSKMSYESGNYVFHYLVEDG-IAYLCITDKSYPKRVAFAFLEEIKQEFIQTYGGDQIK-SASPYS 76 (83)
T ss_dssp HHHHHHHTS-TTS--ESEEEEEETTEEEEEEEETT-EEEEEEEETTS-HHHHHHHHHHHHHHHHHHCTTTTTT-TSTTTT
T ss_pred CHHHHHHhcCCCC--CCeEEEEECCEEEEEEEcCC-eEEEEEEcCCCCcchHHHHHHHHHHHHHHHcCcchhc-ccCCcc
Confidence 5899999999752 48999999999999999999 999999999999999999999999999 999843343 345898
Q ss_pred cccchH
Q 027525 115 CVKFES 120 (222)
Q Consensus 115 ~~~f~~ 120 (222)
+.+|++
T Consensus 77 ~~~F~~ 82 (83)
T PF13774_consen 77 FKEFDS 82 (83)
T ss_dssp THHHHH
T ss_pred hhhcCC
Confidence 888875
No 8
>COG5143 SNC1 Synaptobrevin/VAMP-like protein [Intracellular trafficking and secretion]
Probab=96.93 E-value=0.0016 Score=52.16 Aligned_cols=70 Identities=10% Similarity=0.083 Sum_probs=61.6
Q ss_pred hHHHHHhhhccchhHHHHhHHHHHHchhchHHHHHHHHHHHhhcccc-CCchHHHHHHH----hhhHHHHHHHHH
Q 027525 137 NLSKLNANRGQDLDIVIEHMYQIVERKRQSEISEEILTATRKHVSSI-WGSPRLEVIAL----KWTPIAIIVAVA 206 (222)
Q Consensus 137 kl~~i~~~v~~vk~im~~Ni~~il~Rge~le~L~~kt~~L~~~s~~F-~~a~kl~r~~w----K~~~i~~~~~~~ 206 (222)
+...++...++++.+|..|+|+.++||++.....|+.++|+.+++.| +-..+...+|| |+-.++..+..+
T Consensus 95 ~s~~~~~~~d~~~~~~~~~~d~~~e~~y~d~s~~D~~d~l~~el~e~K~~l~k~ie~~l~R~ekl~~lv~~ss~L 169 (190)
T COG5143 95 KSSALEQLIDDTVGIMRVNIDKVIEKGYRDPSIQDKLDQLQQELEETKRVLNKNIEKVLYRDEKLDLLVDLSSIL 169 (190)
T ss_pred hhhhHhhcccCccchhhhhHHHHHHhhcCCchhhhHHHHHHHHHHHHHHHHHHHHHHHHHccchHHHHHHHHHHH
Confidence 56788999999999999999999999999999999999999999999 88888888887 777777654443
No 9
>KOG0810 consensus SNARE protein Syntaxin 1 and related proteins [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.34 E-value=0.0093 Score=51.50 Aligned_cols=79 Identities=13% Similarity=0.160 Sum_probs=54.8
Q ss_pred hhHHHHHhhhccchhHHHHhHHHHHHchhchHHHHHHHHHHH---hhcccc-CCchHHHHHHHhhhHHHHHHHHHHHHHH
Q 027525 136 ANLSKLNANRGQDLDIVIEHMYQIVERKRQSEISEEILTATR---KHVSSI-WGSPRLEVIALKWTPIAIIVAVAAILLW 211 (222)
Q Consensus 136 dkl~~i~~~v~~vk~im~~Ni~~il~Rge~le~L~~kt~~L~---~~s~~F-~~a~kl~r~~wK~~~i~~~~~~~~~~i~ 211 (222)
+.+.+++..+.|+.++-.+==--+.+.||.+|.++...++-. .++..- ++|.+..++..||+.+.+++++++++|.
T Consensus 206 ~~ik~LEksi~ELhqlFlDMa~LVe~QgEmvd~IE~nV~~A~~~V~~g~~~~~kAv~~qkkaRK~k~i~ii~~iii~~v~ 285 (297)
T KOG0810|consen 206 DEIKKLEKSIRELHQLFLDMAVLVESQGEMVDRIENNVENAVDYVEQGVDHLKKAVKYQKKARKWKIIIIIILIIIIVVL 285 (297)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhceeeeehHHHHHHHHH
Confidence 578888899999988877777778888988888876554433 344555 7777777777677766666555555444
Q ss_pred HHH
Q 027525 212 ANL 214 (222)
Q Consensus 212 ~~~ 214 (222)
+.+
T Consensus 286 v~~ 288 (297)
T KOG0810|consen 286 VVV 288 (297)
T ss_pred hhh
Confidence 333
No 10
>PF01217 Clat_adaptor_s: Clathrin adaptor complex small chain; InterPro: IPR022775 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. Clathrin coats contain both clathrin and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors []. All AP complexes are heterotetramers composed of two large subunits (adaptins), a medium subunit (mu) and a small subunit (sigma). Each subunit has a specific function. Adaptin subunits recognise and bind to clathrin through their hinge region (clathrin box), and recruit accessory proteins that modulate AP function through their C-terminal appendage domains. By contrast, GGAs are monomers composed of four domains, which have functions similar to AP subunits: an N-terminal VHS (Vps27p/Hrs/Stam) domain, a GAT (GGA and Tom1) domain, a hinge region, and a C-terminal GAE (gamma-adaptin ear) domain. The GAE domain is similar to the AP gamma-adaptin ear domain, being responsible for the recruitment of accessory proteins that regulate clathrin-mediated endocytosis []. While clathrin mediates endocytic protein transport from ER to Golgi, coatomers (COPI, COPII) primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the small sigma and mu subunits of various adaptins from different AP clathrin adaptor complexes (including AP1, AP2, AP3 and AP4), and the zeta and delta subunits of various coatomer (COP) adaptors. The small sigma subunit of AP proteins have been characterised in several species [, , , ]. The sigma subunit plays a role in protein sorting in the late-Golgi/trans-Golgi network (TGN) and/or endosomes. The zeta subunit of coatomers (zeta-COP) is required for coatomer binding to Golgi membranes and for coat-vesicle assembly [, ]. More information about these proteins can be found at Protein of the Month: Clathrin [].; PDB: 1W63_W 2JKR_I 2VGL_S 2JKT_I 2XA7_S 2HF6_A 3TJZ_C.
Probab=95.92 E-value=0.43 Score=36.36 Aligned_cols=95 Identities=16% Similarity=0.145 Sum_probs=67.3
Q ss_pred CcEEEEEEEecCCeeeeeeccCCCCCCCChhHHHHHHHHHHHHcCCCCCCCCceEEEEcCeEEEEEeeCCcEEEEEEeCC
Q 027525 1 MVKMTIVGRVSDGLPLARGPRYLNQEHDSFSFYKQQAEFILKEISRGALAPSKMTIRVDHHSFHYLMENGIGCFITLCDS 80 (222)
Q Consensus 1 mI~y~~IaR~~d~~iLae~~~~~~~~~~~~~~~~~~a~~il~~i~~~~~~~~k~s~~~~~~~~h~l~~~~~~~~~cvtd~ 80 (222)
||...+|.-.+|..+++.|..+ .+. .+-+...+++.+...... +..--.+..+++.+-|...++ +.++++++.
T Consensus 1 MI~~i~i~n~~G~~i~~k~y~~---~~~--~~~~~~~~~~~~~~~~~~-~~~~~i~~~~~~~~vy~~~~d-l~~~~v~~~ 73 (141)
T PF01217_consen 1 MIKAILILNSQGKRILSKYYRD---VSE--EERQKLFEKFIKKKSSRN-SKQSPIFEHDNYRIVYKRYSD-LYFVVVGDE 73 (141)
T ss_dssp SEEEEEEEETTSEEEEEEESST---STS--HHHHHHHHHHHHHHHTSS-SSSTSEEEETTEEEEEEEETT-EEEEEEESS
T ss_pred CEEEEEEEcCCCCEEEehhcCC---ccH--HHHHHHHHHHHHHHHhcc-cccceeeecccceeeeEeecc-EEEEEEeec
Confidence 8999999988888999999863 211 111234444443332221 023445778899888888889 999999999
Q ss_pred CCChHHHHHHHHHHHHHH-hcch
Q 027525 81 SYPRKLAFHYLQDLQKEF-QKFD 102 (222)
Q Consensus 81 ~~p~~~af~fL~ei~~~F-~~~~ 102 (222)
+...-....||..+.+.+ .-++
T Consensus 74 ~eNel~~~e~l~~~v~~l~~~~~ 96 (141)
T PF01217_consen 74 NENELLLLEFLHRLVEVLDDYFG 96 (141)
T ss_dssp TSBHHHHHHHHHHHHHHHHHHHS
T ss_pred ccchHHHHHHHHHhhhhhhhhhc
Confidence 999999999999988887 4443
No 11
>PF03908 Sec20: Sec20; InterPro: IPR005606 Sec20 is a membrane glycoprotein associated with secretory pathway.
Probab=95.64 E-value=0.068 Score=37.96 Aligned_cols=70 Identities=9% Similarity=0.020 Sum_probs=39.8
Q ss_pred HHhhhccchhHHHHhHHHHHHchhchHHHHHHHHHHHhhcccc-CC----------chHHHHHHH--hhhHHHHHHHHHH
Q 027525 141 LNANRGQDLDIVIEHMYQIVERKRQSEISEEILTATRKHVSSI-WG----------SPRLEVIAL--KWTPIAIIVAVAA 207 (222)
Q Consensus 141 i~~~v~~vk~im~~Ni~~il~Rge~le~L~~kt~~L~~~s~~F-~~----------a~kl~r~~w--K~~~i~~~~~~~~ 207 (222)
+-+.+..++..|.+.+++- ...++.|.+.|+.|......| .- -+++.|+.| |+.+.+++.++++
T Consensus 6 vT~~L~rt~~~m~~ev~~s---~~t~~~L~~Ss~~L~~~~~e~~~~~~~l~~s~~ll~~l~r~~~~D~~li~~~~~~f~~ 82 (92)
T PF03908_consen 6 VTESLRRTRQMMAQEVERS---ELTLQTLEESSATLRSTNDEYDGQSSLLKKSRKLLKKLERRDKTDRILIFFAFLFFLL 82 (92)
T ss_pred HHHHHHHHHHHHHHHHHHH---HHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence 4455555566665554443 445556666666665554444 22 245666666 7777777666666
Q ss_pred HHHHHH
Q 027525 208 ILLWAN 213 (222)
Q Consensus 208 ~~i~~~ 213 (222)
+++|..
T Consensus 83 ~v~yI~ 88 (92)
T PF03908_consen 83 VVLYIL 88 (92)
T ss_pred HHHHHh
Confidence 666554
No 12
>PF04086 SRP-alpha_N: Signal recognition particle, alpha subunit, N-terminal; InterPro: IPR007222 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]. SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. The SR receptor is a monomer consisting of the loosely membrane-associated SR-alpha homologue FtsY, while the eukaryotic SR receptor is a heterodimer of SR-alpha (70 kDa) and SR-beta (25 kDa), both of which contain a GTP-binding domain []. SR-alpha regulates the targeting of SRP-ribosome-nascent polypeptide complexes to the translocon []. SR-alpha binds to the SRP54 subunit of the SRP complex. The SR-beta subunit is a transmembrane GTPase that anchors the SR-alpha subunit (a peripheral membrane GTPase) to the ER membrane []. SR-beta interacts with the N-terminal SRX-domain of SR-alpha, which is not present in the bacterial FtsY homologue. SR-beta also functions in recruiting the SRP-nascent polypeptide to the protein-conducting channel. This entry represents the alpha subunit of the SR receptor.; GO: 0003924 GTPase activity, 0005047 signal recognition particle binding, 0005525 GTP binding, 0006184 GTP catabolic process, 0006886 intracellular protein transport, 0005785 signal recognition particle receptor complex; PDB: 2FH5_A 2GO5_1.
Probab=94.72 E-value=0.09 Score=44.88 Aligned_cols=54 Identities=15% Similarity=0.325 Sum_probs=37.3
Q ss_pred CCceEEEEcCeEEEEEeeCCc-EEEEEEeCCCCChHHHHHHHHHHHHHH-hcchhh
Q 027525 51 PSKMTIRVDHHSFHYLMENGI-GCFITLCDSSYPRKLAFHYLQDLQKEF-QKFDIS 104 (222)
Q Consensus 51 ~~k~s~~~~~~~~h~l~~~~~-~~~~cvtd~~~p~~~af~fL~ei~~~F-~~~~~~ 104 (222)
.+..+|++++|.++|...|+. ++|++|=..-..-...=.||+.|+..| ..|...
T Consensus 17 ~~~~~~~~d~y~lkw~~~Ne~~LvfVvvYq~il~l~yvd~LL~~v~~~F~~~y~~~ 72 (279)
T PF04086_consen 17 SGNSSFTYDNYTLKWTLDNELGLVFVVVYQKILQLTYVDKLLDDVKKEFVKLYKNQ 72 (279)
T ss_dssp -----------EEEEEEETTTTEEEEEEES-GGGHHHHHHHHHHHHHHHHHHTHHH
T ss_pred cCCCceeEcCEEEEEEEeccCCEEEeeeecccccchHHHHHHHHHHHHHHHHHhHH
Confidence 355678999999999887754 999999999988888889999999999 999863
No 13
>PF00957 Synaptobrevin: Synaptobrevin; InterPro: IPR001388 Synaptobrevin is an intrinsic membrane protein of small synaptic vesicles [], specialised secretory organelles of neurons that actively accumulate neurotransmitters and participate in their calcium-dependent release by exocytosis. Vesicle function is mediated by proteins in their membranes, although the precise nature of the protein-protein interactions underlying this are still uncertain []. Synaptobrevin may play a role in the molecular events underlying neurotransmitter release and vesicle recycling and may be involved in the regulation of membrane flow in the nerve terminal, a process mediated by interaction with low molecular weight GTP-binding proteins []. Synaptic vesicle-associated membrane proteins (VAMPs) from Torpedo californica (Pacific electric ray) and SNC1 from yeast are related to synaptobrevin.; GO: 0016192 vesicle-mediated transport, 0016021 integral to membrane; PDB: 3EGX_C 2NUP_C 3EGD_C 2NUT_C 1IOU_A 1H8M_A 3B5N_A 3ZYM_A 2NPS_A 1SFC_E ....
Probab=94.45 E-value=0.19 Score=35.25 Aligned_cols=51 Identities=10% Similarity=0.145 Sum_probs=41.0
Q ss_pred hhHHHHHhhhccchhHHHHhHHHHHHchhchHHHHHHHHHHHhhcccc-CCc
Q 027525 136 ANLSKLNANRGQDLDIVIEHMYQIVERKRQSEISEEILTATRKHVSSI-WGS 186 (222)
Q Consensus 136 dkl~~i~~~v~~vk~im~~Ni~~il~Rge~le~L~~kt~~L~~~s~~F-~~a 186 (222)
+++.+++..+.+.-+-+.++=+++=+=.++-+.|.+.|+.....|... +..
T Consensus 10 ~~v~~v~~im~~Ni~~ll~Rge~L~~L~~kt~~L~~~a~~F~k~a~~l~r~~ 61 (89)
T PF00957_consen 10 EQVEEVKNIMRENIDKLLERGEKLEELEDKTEELSDNAKQFKKNAKKLKRKM 61 (89)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHcCchHHHHHHHHHHHHHHhHHHHHHHHHHHHHH
Confidence 566777777777777777777777777888999999999999999999 554
No 14
>COG5074 t-SNARE complex subunit, syntaxin [Intracellular trafficking and secretion]
Probab=92.47 E-value=0.4 Score=39.80 Aligned_cols=58 Identities=5% Similarity=0.065 Sum_probs=38.4
Q ss_pred hHHHHHhhhccchhHHHHhHHHHHHchhchHHHHHHHHHHHhh---cccc-CCchHHHHHHH
Q 027525 137 NLSKLNANRGQDLDIVIEHMYQIVERKRQSEISEEILTATRKH---VSSI-WGSPRLEVIAL 194 (222)
Q Consensus 137 kl~~i~~~v~~vk~im~~Ni~~il~Rge~le~L~~kt~~L~~~---s~~F-~~a~kl~r~~w 194 (222)
.|.++..-+.|..+...+==+.+.++.|..|.+.+..++-... +... -+|.+--|+..
T Consensus 186 ~ikkiEkt~ael~qLfndm~~~V~eq~e~Vd~I~~~~~~~~~n~~~g~~h~d~AvksaRaaR 247 (280)
T COG5074 186 EIKKIEKTMAELTQLFNDMEELVIEQQENVDVIDKNVEDAQENVEQGVGHTDKAVKSARAAR 247 (280)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhcchHHHHHhhHhhHHhhHHHhhhhHHHHHHHHHHHH
Confidence 4666666666666666666678899999999888877766543 3333 44544455554
No 15
>PF04099 Sybindin: Sybindin-like family ; InterPro: IPR007233 Sybindin is a physiological syndecan-2 ligand on dendritic spines, the small protrusions on the surface of dendrites that receive the vast majority of excitatory synapses. Syndecan-2 induces spine formation by recruiting intracellular vesicles toward postsynaptic sites through the interaction with synbindin []. ; GO: 0006888 ER to Golgi vesicle-mediated transport, 0005801 cis-Golgi network; PDB: 3CUE_C 2J3T_C 2ZMV_B 2JSN_A.
Probab=91.74 E-value=2.5 Score=32.49 Aligned_cols=63 Identities=16% Similarity=0.197 Sum_probs=39.2
Q ss_pred HHHHHHHcCCCC------CCCCceEEEEcCeEEEEEe-eCCcEEEEEEeCCCCChHHHHHHHHHHHHHHhcc
Q 027525 37 AEFILKEISRGA------LAPSKMTIRVDHHSFHYLM-ENGIGCFITLCDSSYPRKLAFHYLQDLQKEFQKF 101 (222)
Q Consensus 37 a~~il~~i~~~~------~~~~k~s~~~~~~~~h~l~-~~~~~~~~cvtd~~~p~~~af~fL~ei~~~F~~~ 101 (222)
.+.+..++.|.. ...+..+++.+.|.+|+.- -.| +-|+++||++.+. ..-.+++.+.+.|.+|
T Consensus 45 l~~i~~klsp~~~~~~~~~~~g~~~~~T~~yklh~~eT~TG-lKFvl~td~~~~~-~~~~l~~~~~~lY~dy 114 (142)
T PF04099_consen 45 LKAIASKLSPVDSKPNEPGSSGFESFETDTYKLHCFETPTG-LKFVLITDPNVPS-LRDELLRIYYELYVDY 114 (142)
T ss_dssp HHHHHHHT-SSSSSS-SSS--SEEEEEESS-EEEEEE-TTS--EEEEEE-TTCCH-CHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhCCCCcccccccceeEEEEEeCCEEEEEEEcCcC-cEEEEEecCCCcc-HHHHHHHHHHHHHHHH
Confidence 455666777721 1246778899999999875 488 9999999999863 3345566666655333
No 16
>PF09426 Nyv1_N: Vacuolar R-SNARE Nyv1 N terminal; InterPro: IPR019005 This entry represents the N-terminal domain of vacuolar R-SNARE Nyv1, which adopts a longin fold []. Vacuolar v-SNARE is required for docking and is only involved in homotypic vacuole fusion. Nyv1 is required for Ca(2+) efflux from the vacuolar lumen, a required signal for subsequent membrane fusion events, by inhibiting vacuolar Ca(2+)-ATPase PMC1 and promoting Ca(2+) release when forming trans-SNARE assemblies during the docking step. In yeast, the N-terminal domain of Nyv1 is sufficient to direct the transport of Nyv1 to limiting membrane of the vacuole []. ; PDB: 2FZ0_A.
Probab=91.55 E-value=0.25 Score=37.35 Aligned_cols=58 Identities=16% Similarity=0.346 Sum_probs=35.7
Q ss_pred HHHHHHHcCCCC-CCCCceEEE-EcCeEEEEEe---eCCcEEEEEEeCCCCChHHHHHHHHHHH
Q 027525 37 AEFILKEISRGA-LAPSKMTIR-VDHHSFHYLM---ENGIGCFITLCDSSYPRKLAFHYLQDLQ 95 (222)
Q Consensus 37 a~~il~~i~~~~-~~~~k~s~~-~~~~~~h~l~---~~~~~~~~cvtd~~~p~~~af~fL~ei~ 95 (222)
-..++.++-|-. +.-+|++.. .|||-+||.. +++ -+++|.+..+.|+-+|-..|.|++
T Consensus 47 ~dmVlPkVV~v~GNKVTK~S~~lIDGyDCYYTT~~~d~~-~vlVCFt~~~vPKILPiRlLSeLK 109 (141)
T PF09426_consen 47 HDMVLPKVVPVEGNKVTKMSMHLIDGYDCYYTTEDNDDN-KVLVCFTRVDVPKILPIRLLSELK 109 (141)
T ss_dssp HHTTGGG----SS-SSEE--S--SSSEEEEE---SS-TT-EEEEEEEETTS-SSHHHHHHHHHT
T ss_pred hhccccceEEccCCeEEEEEeecccccceeeecccCCCC-eEEEEEEecCCcceecHHHHHhhc
Confidence 333444544432 224455555 4899999988 345 999999999999999999999987
No 17
>PF03904 DUF334: Domain of unknown function (DUF334); InterPro: IPR005602 This is a family of proteins found in Staphylococcus aureus plasmid with no characterised function.
Probab=90.59 E-value=1.3 Score=36.66 Aligned_cols=31 Identities=13% Similarity=0.148 Sum_probs=16.6
Q ss_pred chHHHHHHHHhccCc---hhhhhHHHHHhhhccc
Q 027525 118 FESIIGNIRKQYVDT---RTQANLSKLNANRGQD 148 (222)
Q Consensus 118 f~~~l~~~~~~yn~~---~~~dkl~~i~~~v~~v 148 (222)
....|++..+.|++. ...|=+..++.++++|
T Consensus 76 I~ssL~eTtkdf~~~~~k~~~dF~~~Lq~~Lk~V 109 (230)
T PF03904_consen 76 IKSSLEETTKDFIDKTEKVHNDFQDILQDELKDV 109 (230)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 344566666666543 2234555666666555
No 18
>KOG0811 consensus SNARE protein PEP12/VAM3/Syntaxin 7/Syntaxin 17 [Intracellular trafficking, secretion, and vesicular transport]
Probab=89.23 E-value=1.3 Score=37.80 Aligned_cols=59 Identities=12% Similarity=0.027 Sum_probs=44.9
Q ss_pred hhHHHHHhhhccchhHHHHhHHHHHHchhchHHHHHHHHHHHhhcc---cc-CCchHHHHHHH
Q 027525 136 ANLSKLNANRGQDLDIVIEHMYQIVERKRQSEISEEILTATRKHVS---SI-WGSPRLEVIAL 194 (222)
Q Consensus 136 dkl~~i~~~v~~vk~im~~Ni~~il~Rge~le~L~~kt~~L~~~s~---~F-~~a~kl~r~~w 194 (222)
+.+.+++.+|.||..|+++==--+=+-|+.+|.+++.-++...+.. .= ++|.+-++++.
T Consensus 180 q~I~~lE~dI~dvN~IFkdL~~lV~eQG~~VDsIe~nve~a~~nveqg~~~L~kA~~yq~~~~ 242 (269)
T KOG0811|consen 180 QAIEQLEADIIDVNEIFKDLGSLVHEQGELVDSIEANVENASVNVEQGTENLRKAAKYQRKAR 242 (269)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 5789999999999999988888888999999999988887766533 22 44444445443
No 19
>KOG0781 consensus Signal recognition particle receptor, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=87.93 E-value=4.1 Score=37.64 Aligned_cols=88 Identities=16% Similarity=0.201 Sum_probs=62.9
Q ss_pred EEEEEEecCCeeeeeeccCCCCCCCChhH-HHHHHHHHHHHcCCCCCCCCceEEEEcCeEEEEEeeCCc-EEEEEEeCCC
Q 027525 4 MTIVGRVSDGLPLARGPRYLNQEHDSFSF-YKQQAEFILKEISRGALAPSKMTIRVDHHSFHYLMENGI-GCFITLCDSS 81 (222)
Q Consensus 4 y~~IaR~~d~~iLae~~~~~~~~~~~~~~-~~~~a~~il~~i~~~~~~~~k~s~~~~~~~~h~l~~~~~-~~~~cvtd~~ 81 (222)
++.+.| ||++|-.|.. .+.+|.+ +....+.++-.=.. +--+++.+.|+.-|-.+|+. ++|+|+-.+-
T Consensus 5 faIFtk--gG~vLw~~~~----~~~~~~~~in~lI~~~ll~er~-----~~~~~~~~~yTlk~q~~N~~~lvfvvvfqki 73 (587)
T KOG0781|consen 5 FAIFTK--GGLVLWCYQE----VGDNLKGPINALIRSVLLSERG-----GVNSFTFEAYTLKYQLDNQYSLVFVVVFQKI 73 (587)
T ss_pred eeeecC--CcEEEEEecc----cchhccchHHHHHHHHHHHhhc-----CcccCchhheeEeeeecCCccEEEEEEEecc
Confidence 566667 9999999987 3555653 33455555433122 22237888999888776543 9999999888
Q ss_pred CChHHHHHHHHHHHHHH-hcch
Q 027525 82 YPRKLAFHYLQDLQKEF-QKFD 102 (222)
Q Consensus 82 ~p~~~af~fL~ei~~~F-~~~~ 102 (222)
..-..+-.+|+++.+.| ..|.
T Consensus 74 ~~L~yv~~ll~~v~~~f~e~~~ 95 (587)
T KOG0781|consen 74 LTLTYVDKLLNDVLNLFREKYD 95 (587)
T ss_pred chhhhHHHHHHHHHHHHHHHhc
Confidence 87788889999999999 8885
No 20
>KOG1983 consensus Tomosyn and related SNARE-interacting proteins [Intracellular trafficking, secretion, and vesicular transport]
Probab=83.75 E-value=0.51 Score=47.42 Aligned_cols=46 Identities=15% Similarity=0.086 Sum_probs=37.7
Q ss_pred HHHhHHHHHHchhchHHHHHHHHHHHhhcccc-CCchHHHHHHH--hhh
Q 027525 152 VIEHMYQIVERKRQSEISEEILTATRKHVSSI-WGSPRLEVIAL--KWT 197 (222)
Q Consensus 152 m~~Ni~~il~Rge~le~L~~kt~~L~~~s~~F-~~a~kl~r~~w--K~~ 197 (222)
-..--+++.+|||+|+.++++|++|++++.+| ..|.++.-++- ||+
T Consensus 943 ~~~a~~~l~e~~erL~~~e~~t~~~~~sa~~~s~~a~e~~~~~~~kk~~ 991 (993)
T KOG1983|consen 943 ASGALQPLNERGERLSRLEERTAEMANSAKQFSSTAHELTGKYKVKKWY 991 (993)
T ss_pred hhhcchhhHhhccccchHHHHHHHhhccHHHHHHHHHHHHhhhhhhhhc
Confidence 33445778999999999999999999999999 98887765552 654
No 21
>PF07798 DUF1640: Protein of unknown function (DUF1640); InterPro: IPR024461 This family consists of uncharacterised proteins.
Probab=80.29 E-value=9.4 Score=30.34 Aligned_cols=79 Identities=16% Similarity=0.111 Sum_probs=43.2
Q ss_pred hhHHHHHhhhccchhHHHHhHHHHHH---------chhchHHHHHHHHHHHhhcccc-CCchHHHHHH----H---hhhH
Q 027525 136 ANLSKLNANRGQDLDIVIEHMYQIVE---------RKRQSEISEEILTATRKHVSSI-WGSPRLEVIA----L---KWTP 198 (222)
Q Consensus 136 dkl~~i~~~v~~vk~im~~Ni~~il~---------Rge~le~L~~kt~~L~~~s~~F-~~a~kl~r~~----w---K~~~ 198 (222)
....+++.+++.++.-+.+-|+++-. ||+.=+.....-..+..-...+ ..-..+|..+ | ||..
T Consensus 80 ~~~e~L~~eie~l~~~L~~ei~~l~a~~klD~n~eK~~~r~e~~~~~~ki~e~~~ki~~ei~~lr~~iE~~K~~~lr~~~ 159 (177)
T PF07798_consen 80 SENEKLQREIEKLRQELREEINKLRAEVKLDLNLEKGRIREEQAKQELKIQELNNKIDTEIANLRTEIESLKWDTLRWLV 159 (177)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35778888899988888888887544 3332233333333333333344 3333455544 5 7755
Q ss_pred HHHHHHHHHHHHHHHH
Q 027525 199 IAIIVAVAAILLWANL 214 (222)
Q Consensus 199 i~~~~~~~~~~i~~~~ 214 (222)
-++++++.+++-+++|
T Consensus 160 g~i~~~~a~~la~~r~ 175 (177)
T PF07798_consen 160 GVIFGCVALVLAILRL 175 (177)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 4444444444444444
No 22
>PF11166 DUF2951: Protein of unknown function (DUF2951); InterPro: IPR021337 This family of proteins has no known function. It has a highly conserved sequence.
Probab=79.72 E-value=12 Score=26.58 Aligned_cols=27 Identities=4% Similarity=0.044 Sum_probs=17.3
Q ss_pred hhHHHHHhhhccchhHHHHhHHHHHHch
Q 027525 136 ANLSKLNANRGQDLDIVIEHMYQIVERK 163 (222)
Q Consensus 136 dkl~~i~~~v~~vk~im~~Ni~~il~Rg 163 (222)
+.|..-+...++|-.-|..++|+ +.|.
T Consensus 28 ~~Ik~gq~~qe~v~~kld~tlD~-i~re 54 (98)
T PF11166_consen 28 DEIKDGQHDQELVNQKLDRTLDE-INRE 54 (98)
T ss_pred HHHHHhHhhHHHHHHHHHhhHHH-HHHH
Confidence 44555566667777777777777 4443
No 23
>KOG0812 consensus SNARE protein SED5/Syntaxin 5 [Intracellular trafficking, secretion, and vesicular transport]
Probab=77.96 E-value=8.3 Score=33.13 Aligned_cols=75 Identities=8% Similarity=0.119 Sum_probs=44.5
Q ss_pred hhHHHHHhhhccchhHHHHhHHHHHHchhchHHHHHHHHHHHhhcccc-CCchHHHHHHH------hhhHHHHHHHHHH-
Q 027525 136 ANLSKLNANRGQDLDIVIEHMYQIVERKRQSEISEEILTATRKHVSSI-WGSPRLEVIAL------KWTPIAIIVAVAA- 207 (222)
Q Consensus 136 dkl~~i~~~v~~vk~im~~Ni~~il~Rge~le~L~~kt~~L~~~s~~F-~~a~kl~r~~w------K~~~i~~~~~~~~- 207 (222)
..+..|...|.|+=+||.+=-..+=+-||-+.-+.+ .-+.+..- ..|...=++.| +|..+=+++++++
T Consensus 227 ~~~q~IEstIsElG~IF~QLA~mVseQ~E~i~RID~----nv~ds~lnI~gA~~ellKy~e~vSSNRwLmvkiF~i~ivF 302 (311)
T KOG0812|consen 227 KTMQNIESTISELGGIFQQLASMVSEQEETIQRIDD----NVDDSDLNIEGAHSELLKYFERVSSNRWLMVKIFGILIVF 302 (311)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh----cchhhhhhhHHHHHHHHHHHHHhccchHHHHHHHHHHHHH
Confidence 567788888888888888777777777764433332 22233333 55666666676 5555444444433
Q ss_pred HHHHHHH
Q 027525 208 ILLWANL 214 (222)
Q Consensus 208 ~~i~~~~ 214 (222)
|++|+.|
T Consensus 303 flvfvlf 309 (311)
T KOG0812|consen 303 FLVFVLF 309 (311)
T ss_pred HHHHHHh
Confidence 3455554
No 24
>PF09889 DUF2116: Uncharacterized protein containing a Zn-ribbon (DUF2116); InterPro: IPR019216 This entry contains various hypothetical prokaryotic proteins whose functions are unknown. They contain a conserved zinc ribbon motif in the N-terminal part and a predicted transmembrane segment in the C-terminal part.
Probab=77.57 E-value=4.7 Score=26.21 Aligned_cols=9 Identities=11% Similarity=0.438 Sum_probs=3.5
Q ss_pred HHHHHHHHH
Q 027525 206 AAILLWANL 214 (222)
Q Consensus 206 ~~~~i~~~~ 214 (222)
+++++++.|
T Consensus 50 l~v~~~~~~ 58 (59)
T PF09889_consen 50 LAVWIFMTF 58 (59)
T ss_pred HHHHHHHHh
Confidence 333444433
No 25
>KOG3894 consensus SNARE protein Syntaxin 18/UFE1 [Intracellular trafficking, secretion, and vesicular transport]
Probab=77.21 E-value=4.9 Score=34.84 Aligned_cols=51 Identities=6% Similarity=0.130 Sum_probs=33.4
Q ss_pred cchHHHHHHHHhccCchhhhhHHHHHhhhc---cchhHHHHhHHHHHHchhchHHHHHH
Q 027525 117 KFESIIGNIRKQYVDTRTQANLSKLNANRG---QDLDIVIEHMYQIVERKRQSEISEEI 172 (222)
Q Consensus 117 ~f~~~l~~~~~~yn~~~~~dkl~~i~~~v~---~vk~im~~Ni~~il~Rge~le~L~~k 172 (222)
-|....+++...+|+. .|.+.++++.|- ..+++|. +++++-.++||.+.+-
T Consensus 215 ~~E~En~~l~~~~n~~--~devrqie~~lvEI~~Lq~ifs---ehvl~Q~~~Id~I~d~ 268 (316)
T KOG3894|consen 215 LLETENQRLLNELNEL--LDEVRQIEKRLVEISALQDIFS---EHVLQQDQNIDLIHDL 268 (316)
T ss_pred HHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHh
Confidence 4566666676667652 255666666554 4555654 5688889999988873
No 26
>KOG0938 consensus Adaptor complexes medium subunit family [Intracellular trafficking, secretion, and vesicular transport]
Probab=76.51 E-value=55 Score=29.05 Aligned_cols=90 Identities=11% Similarity=0.170 Sum_probs=61.8
Q ss_pred CcEEEEEEEecCCeeeeeeccCCCCCCCChhHHHHHHH-HHHHHcCCCCCCCCce-EEEEcCeEEEEEeeCCcEEEEEEe
Q 027525 1 MVKMTIVGRVSDGLPLARGPRYLNQEHDSFSFYKQQAE-FILKEISRGALAPSKM-TIRVDHHSFHYLMENGIGCFITLC 78 (222)
Q Consensus 1 mI~y~~IaR~~d~~iLae~~~~~~~~~~~~~~~~~~a~-~il~~i~~~~~~~~k~-s~~~~~~~~h~l~~~~~~~~~cvt 78 (222)
||-=..|....|.+.++....+ +..++..+ +-+ .++.. . +.+. ..+.++-+|||...++ +-.++||
T Consensus 1 misglfi~n~rGevlink~fr~--dlkrs~~d---iFRv~vi~n----~--d~r~PV~~igsttf~~~r~~n-l~lvait 68 (446)
T KOG0938|consen 1 MISGLFIYNLRGEVLINKTFRD--DLKRSIVD---IFRVQVINN----L--DVRSPVLTIGSTTFHHIRSSN-LWLVAIT 68 (446)
T ss_pred CcceEEEEeccCcEEEehhhhh--hhhhhHHH---HHHHhhhhc----c--ccCCCeeEecceeEEEEeecc-EEEEEEe
Confidence 5555556666688988876543 23444442 222 22222 1 3333 4567888999999999 9999999
Q ss_pred CCCCChHHHHHHHHHHHHHH-hcch
Q 027525 79 DSSYPRKLAFHYLQDLQKEF-QKFD 102 (222)
Q Consensus 79 d~~~p~~~af~fL~ei~~~F-~~~~ 102 (222)
..+-.....|.||.++.+-+ .=|+
T Consensus 69 ksN~Nva~v~eFl~kl~avm~aYfg 93 (446)
T KOG0938|consen 69 KSNANVAAVFEFLYKLDAVMNAYFG 93 (446)
T ss_pred cCCCchhhHHHHHHHHHHHHHHHhc
Confidence 99999999999999999888 5554
No 27
>KOG3369 consensus Transport protein particle (TRAPP) complex subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=76.44 E-value=24 Score=28.12 Aligned_cols=80 Identities=15% Similarity=0.287 Sum_probs=53.0
Q ss_pred HHHHcCCCCCCCCceEEEEcCeEEEEEe-eCCcEEEEEEeCCCCChHHHHHHHHHHHHHHhcchhhhhcccCCCcc----
Q 027525 40 ILKEISRGALAPSKMTIRVDHHSFHYLM-ENGIGCFITLCDSSYPRKLAFHYLQDLQKEFQKFDISLIDKITRPYS---- 114 (222)
Q Consensus 40 il~~i~~~~~~~~k~s~~~~~~~~h~l~-~~~~~~~~cvtd~~~p~~~af~fL~ei~~~F~~~~~~~~~~~~~~~~---- 114 (222)
+..++.|..-..+....+.+.+..|+.. -.| +-|+++|++.. ..|=.+|+.+...|++|... .+-|+
T Consensus 110 I~~qlsp~~ksSGie~LetdtF~l~~~QTlTG-~KFVvis~~~~--~~aD~lLrKiYelYsDyvlK-----NPfYSlEMP 181 (199)
T KOG3369|consen 110 ISTQLSPEPKSSGIEVLETDTFTLHIFQTLTG-TKFVVIAEPGT--QGADSLLRKIYELYSDYVLK-----NPFYSLEMP 181 (199)
T ss_pred eeeccCCCCCCCceEEEEeccEEEEEEEccCC-cEEEEEecCCc--hhHHHHHHHHHHHHHHHhhc-----CCccCcccc
Confidence 3344444211135677888999988665 588 99999999877 55668899988888777531 02333
Q ss_pred --cccchHHHHHHHH
Q 027525 115 --CVKFESIIGNIRK 127 (222)
Q Consensus 115 --~~~f~~~l~~~~~ 127 (222)
+..|+.-|+...+
T Consensus 182 IRc~lFDe~lk~~le 196 (199)
T KOG3369|consen 182 IRCELFDEKLKFLLE 196 (199)
T ss_pred eeHHHhhHHHHHHHh
Confidence 3368777776654
No 28
>KOG3251 consensus Golgi SNAP receptor complex member [Intracellular trafficking, secretion, and vesicular transport]
Probab=76.21 E-value=17 Score=29.90 Aligned_cols=60 Identities=12% Similarity=-0.075 Sum_probs=35.8
Q ss_pred HHhHHHHHHchhc-hHHHHHHHHHHHhhcccc-CCc----------hHHHHHHH--hhhHHHHHHHHHHHHHHH
Q 027525 153 IEHMYQIVERKRQ-SEISEEILTATRKHVSSI-WGS----------PRLEVIAL--KWTPIAIIVAVAAILLWA 212 (222)
Q Consensus 153 ~~Ni~~il~Rge~-le~L~~kt~~L~~~s~~F-~~a----------~kl~r~~w--K~~~i~~~~~~~~~~i~~ 212 (222)
+.-+|.+|++|-. +|.|+.+-..|+..-+.+ .-+ +-+.|+.. |+..+++++++++++.++
T Consensus 135 ~~~lDd~l~~G~~ile~l~~Q~~~L~~~~~ki~~~~ntLGlSn~ti~lIeRR~~~Dk~iF~~G~i~~~v~~yl~ 208 (213)
T KOG3251|consen 135 HNMLDDLLESGSAILENLVEQRLTLKGTQKKILDILNTLGLSNQTIRLIERRVREDKIIFYGGVILTLVIMYLF 208 (213)
T ss_pred HhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHH
Confidence 4446777777754 678888777777665554 321 33455555 666666665554443333
No 29
>KOG0860 consensus Synaptobrevin/VAMP-like protein [Intracellular trafficking, secretion, and vesicular transport]
Probab=75.51 E-value=11 Score=28.02 Aligned_cols=32 Identities=3% Similarity=-0.014 Sum_probs=19.3
Q ss_pred hhchHHHHHHHHHHHhhcccc-CCc--hHHHHHHH
Q 027525 163 KRQSEISEEILTATRKHVSSI-WGS--PRLEVIAL 194 (222)
Q Consensus 163 ge~le~L~~kt~~L~~~s~~F-~~a--~kl~r~~w 194 (222)
.+|-|.|.+-|+.-...|... +.= +.+|-+++
T Consensus 63 ~drad~L~~~as~F~~~A~klkrk~wWkn~Km~~i 97 (116)
T KOG0860|consen 63 DDRADQLQAGASQFEKTAVKLKRKMWWKNCKMRII 97 (116)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 555666777777777777766 332 44444444
No 30
>PF09753 Use1: Membrane fusion protein Use1; InterPro: IPR019150 This entry represents a family of proteins, approximately 300 residues in length, involved in vesicle transport. They have a single C-terminal transmembrane domain and a SNARE [soluble NSF (N-ethylmaleimide-sensitive fusion protein) attachment protein receptor] domain of approximately 60 residues. The SNARE domains are essential for membrane fusion and are conserved from yeasts to humans. Use1 is one of the three protein subunits that make up the SNARE complex and it is specifically required for Golgi-endoplasmic reticulum retrograde transport [].
Probab=74.98 E-value=5.3 Score=33.61 Aligned_cols=10 Identities=30% Similarity=0.703 Sum_probs=5.9
Q ss_pred HHHHHHHHHH
Q 027525 89 HYLQDLQKEF 98 (222)
Q Consensus 89 ~fL~ei~~~F 98 (222)
.+-.+++++.
T Consensus 113 ~~~~eLR~~l 122 (251)
T PF09753_consen 113 RYTSELRKRL 122 (251)
T ss_pred hhhHHHHhhh
Confidence 4446666666
No 31
>PF09753 Use1: Membrane fusion protein Use1; InterPro: IPR019150 This entry represents a family of proteins, approximately 300 residues in length, involved in vesicle transport. They have a single C-terminal transmembrane domain and a SNARE [soluble NSF (N-ethylmaleimide-sensitive fusion protein) attachment protein receptor] domain of approximately 60 residues. The SNARE domains are essential for membrane fusion and are conserved from yeasts to humans. Use1 is one of the three protein subunits that make up the SNARE complex and it is specifically required for Golgi-endoplasmic reticulum retrograde transport [].
Probab=74.20 E-value=9.6 Score=32.01 Aligned_cols=16 Identities=31% Similarity=0.397 Sum_probs=6.8
Q ss_pred hhcccc-CCchHHHHHH
Q 027525 178 KHVSSI-WGSPRLEVIA 193 (222)
Q Consensus 178 ~~s~~F-~~a~kl~r~~ 193 (222)
.+.... +.+.+|+.+.
T Consensus 206 ~n~~~l~~~~~rl~~~~ 222 (251)
T PF09753_consen 206 RNLSSLKRESKRLKEHS 222 (251)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 333444 4444444433
No 32
>PRK01026 tetrahydromethanopterin S-methyltransferase subunit G; Provisional
Probab=71.23 E-value=9.9 Score=26.00 Aligned_cols=42 Identities=10% Similarity=-0.029 Sum_probs=22.0
Q ss_pred hchHHHHHHHHHHHhhcccc-CCchHHHHHHH-hhhHHHHHHHHHH
Q 027525 164 RQSEISEEILTATRKHVSSI-WGSPRLEVIAL-KWTPIAIIVAVAA 207 (222)
Q Consensus 164 e~le~L~~kt~~L~~~s~~F-~~a~kl~r~~w-K~~~i~~~~~~~~ 207 (222)
+|||++++|-|.-. |.-| +..+|+=|-.= =|..++++.++++
T Consensus 22 ~rLD~iEeKVEftn--~Ei~Qr~GkkvGRDiGIlYG~viGlli~~i 65 (77)
T PRK01026 22 KRLDEIEEKVEFTN--AEIFQRIGKKVGRDIGILYGLVIGLLIVLV 65 (77)
T ss_pred HHHHHHHHHHHHHH--HHHHHHHhHHhhhHHHHHHHHHHHHHHHHH
Confidence 45666666666433 3445 55566666553 3444444443333
No 33
>TIGR01149 mtrG N5-methyltetrahydromethanopterin:coenzyme M methyltransferase subunit G. coenzyme M methyltransferase subunit G in methanogenic archaea. This methyltranfersae is membrane-associated enzyme complex that uses methyl-transfer reaction to drive sodium-ion pump. Archaea have evolved energy-yielding pathways marked by one-carbon biochemistry featuring novel cofactors and enzymes. This transferase is involved in the transfer of 'methyl' group from N5-methyltetrahydromethanopterin to coenzyme M. In an accompanying reaction, methane is produced by two-electron reduction of the methyl moiety in methyl-coenzyme M by another enzyme methyl-coenzyme M reductase.
Probab=69.94 E-value=9.4 Score=25.53 Aligned_cols=37 Identities=5% Similarity=-0.125 Sum_probs=19.8
Q ss_pred hchHHHHHHHHHHHhhcccc-CCchHHHHHHH-hhhHHHHH
Q 027525 164 RQSEISEEILTATRKHVSSI-WGSPRLEVIAL-KWTPIAII 202 (222)
Q Consensus 164 e~le~L~~kt~~L~~~s~~F-~~a~kl~r~~w-K~~~i~~~ 202 (222)
+|||.+++|-|.-. +.-| +..+|+=|..= =|..++++
T Consensus 19 ~rLd~iEeKVEf~~--~E~~Qr~Gkk~GRDiGIlYG~viGl 57 (70)
T TIGR01149 19 KRLDEIEEKVEFVN--GEVAQRIGKKVGRDIGILYGLVIGL 57 (70)
T ss_pred HHHHHHHHHHHHHH--HHHHHHHhHHhhhHHHHHHHHHHHH
Confidence 45666666666433 3445 55566666553 34444444
No 34
>PF04210 MtrG: Tetrahydromethanopterin S-methyltransferase, subunit G ; InterPro: IPR005866 This model describes the N5-methyltetrahydromethanopterin: coenzyme M methyltransferase subunit G in methanogenic archaea. This methyltranferase is a membrane-associated enzyme complex that uses methyl-transfer reaction to drive a sodium-ion pump. Archaea have evolved energy-yielding pathways marked by one-carbon biochemistry featuring novel cofactors and enzymes. This transferase is involved in the transfer of a methyl group from N5-methyltetrahydromethanopterin to coenzyme M. In an accompanying reaction, methane is produced by two-electron reduction of the methyl moiety in methyl-coenzyme M by another enzyme methyl-coenzyme M reductase.; GO: 0030269 tetrahydromethanopterin S-methyltransferase activity, 0015948 methanogenesis, 0016021 integral to membrane
Probab=68.85 E-value=16 Score=24.50 Aligned_cols=44 Identities=7% Similarity=-0.031 Sum_probs=23.4
Q ss_pred hhchHHHHHHHHHHHhhcccc-CCchHHHHHHH-hhhHHHHHHHHHHH
Q 027525 163 KRQSEISEEILTATRKHVSSI-WGSPRLEVIAL-KWTPIAIIVAVAAI 208 (222)
Q Consensus 163 ge~le~L~~kt~~L~~~s~~F-~~a~kl~r~~w-K~~~i~~~~~~~~~ 208 (222)
.+|||.+++|-|.-. |.-+ +..+|+=|-.= =|..++++.+++++
T Consensus 18 ~~rLd~iEeKvEf~~--~Ei~Qr~GkkiGRDiGIlYG~v~Glii~~~~ 63 (70)
T PF04210_consen 18 MKRLDEIEEKVEFTN--AEIAQRAGKKIGRDIGILYGLVIGLIIFIIY 63 (70)
T ss_pred HHHHHHHHHHHHhHH--HHHHHHHhHHhhhHHHHHHHHHHHHHHHHHH
Confidence 456777777766433 3445 55566666543 35555554443333
No 35
>KOG1666 consensus V-SNARE [Intracellular trafficking, secretion, and vesicular transport]
Probab=67.24 E-value=20 Score=29.46 Aligned_cols=40 Identities=25% Similarity=0.239 Sum_probs=21.0
Q ss_pred hhchHHHHHHHHHHHhhcccc-CCchHHHHHH---H--hhhHHHHH
Q 027525 163 KRQSEISEEILTATRKHVSSI-WGSPRLEVIA---L--KWTPIAII 202 (222)
Q Consensus 163 ge~le~L~~kt~~L~~~s~~F-~~a~kl~r~~---w--K~~~i~~~ 202 (222)
+..-|.|+..=+.|....... +..+-|+-.+ . ||...+++
T Consensus 159 ~~QRe~L~rar~rL~~td~~lgkS~kiL~tM~RR~~~nk~~~~aii 204 (220)
T KOG1666|consen 159 HGQREQLERARERLRETDANLGKSRKILTTMTRRLIRNKFTLTAII 204 (220)
T ss_pred HHHHHHHHHHHHHHHhchhhhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344455555555666666666 5554454433 3 55544444
No 36
>PF04799 Fzo_mitofusin: fzo-like conserved region; InterPro: IPR006884 This entry represents the heptad repeat domain which is conserved at the C terminus of Fzo/mitofusion family of GTPases. Fzo is a mediator of mitochondrial fusion during spermatogenesis []. This conserved region is also found in the human mitofusin protein []. This domain forms a dimeric antiparallel coiled coil structure, which has been proposed to act as a mitochodrial tether before vesicle fusion [].; GO: 0003924 GTPase activity, 0006184 GTP catabolic process, 0008053 mitochondrial fusion, 0005741 mitochondrial outer membrane, 0016021 integral to membrane; PDB: 1T3J_A.
Probab=65.68 E-value=11 Score=30.00 Aligned_cols=47 Identities=11% Similarity=0.120 Sum_probs=41.2
Q ss_pred hHHHHHhhhccchhHHHHhHHHHHHchhchHHHHHHHHHHHhhcccc
Q 027525 137 NLSKLNANRGQDLDIVIEHMYQIVERKRQSEISEEILTATRKHVSSI 183 (222)
Q Consensus 137 kl~~i~~~v~~vk~im~~Ni~~il~Rge~le~L~~kt~~L~~~s~~F 183 (222)
-...+..+|++++.-|.+.|+++-..-++||.+..++..|++.+..+
T Consensus 110 tf~rL~~~Vd~~~~eL~~eI~~L~~~i~~le~~~~~~k~LrnKa~~L 156 (171)
T PF04799_consen 110 TFARLCQQVDQTKNELEDEIKQLEKEIQRLEEIQSKSKTLRNKANWL 156 (171)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 46778999999999999999999999999999999988888776654
No 37
>KOG3368 consensus Transport protein particle (TRAPP) complex subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=65.47 E-value=58 Score=24.77 Aligned_cols=57 Identities=14% Similarity=0.185 Sum_probs=44.1
Q ss_pred HHHHHHHcCCCCCCCCceEEEEcCeEEEEEee-CCcEEEEEEeCCCCChHHHHHHHHHHHH
Q 027525 37 AEFILKEISRGALAPSKMTIRVDHHSFHYLME-NGIGCFITLCDSSYPRKLAFHYLQDLQK 96 (222)
Q Consensus 37 a~~il~~i~~~~~~~~k~s~~~~~~~~h~l~~-~~~~~~~cvtd~~~p~~~af~fL~ei~~ 96 (222)
.+.+.+|+.|+...++..++.-+.|-.||... .| +=++.+||+....- -+.|+.|.+
T Consensus 45 lkS~v~Kls~~d~k~~f~sy~Ts~YklhfyeTptg-lk~vl~Tdpk~~~i--r~vLq~IYs 102 (140)
T KOG3368|consen 45 LKSFVSKLSPGDVKDGFLSYKTSKYKLHFYETPTG-LKFVLNTDPKAGSI--RDVLQYIYS 102 (140)
T ss_pred HHHHHHhcCCCCcccCeeEEeeceeEEEEEEcCCC-cEEEEecCCCcccH--HHHHHHHHH
Confidence 67788899987545778888999999998765 78 99999999876542 255666666
No 38
>COG1422 Predicted membrane protein [Function unknown]
Probab=64.37 E-value=21 Score=29.06 Aligned_cols=72 Identities=14% Similarity=0.145 Sum_probs=41.6
Q ss_pred hhHHHHHhhhccchhHHHHhHHHHHH--chhchHHHHHHHHHHHhhcccc-CCchHHHHHHHhhhHHHHH-HHHHHHHHH
Q 027525 136 ANLSKLNANRGQDLDIVIEHMYQIVE--RKRQSEISEEILTATRKHVSSI-WGSPRLEVIALKWTPIAII-VAVAAILLW 211 (222)
Q Consensus 136 dkl~~i~~~v~~vk~im~~Ni~~il~--Rge~le~L~~kt~~L~~~s~~F-~~a~kl~r~~wK~~~i~~~-~~~~~~~i~ 211 (222)
.++.++|+...|.++-+.+ +=+ ..++|+.|+++=.++......+ +. ..+|.+.. ++.++++.|
T Consensus 72 ekm~~~qk~m~efq~e~~e----A~~~~d~~~lkkLq~~qmem~~~Q~elmk~---------qfkPM~~~~v~tI~~F~W 138 (201)
T COG1422 72 EKMKELQKMMKEFQKEFRE----AQESGDMKKLKKLQEKQMEMMDDQRELMKM---------QFKPMLYISVLTIPFFAW 138 (201)
T ss_pred HHHHHHHHHHHHHHHHHHH----HHHhCCHHHHHHHHHHHHHHHHHHHHHHHH---------hhhhHHHHHHHHHHHHHH
Confidence 4688888888877777543 333 2345666666655554433333 32 24455554 444566788
Q ss_pred HHH-hcCCcc
Q 027525 212 ANL-VLTDEF 220 (222)
Q Consensus 212 ~~~-~~~~~~ 220 (222)
++- ++|++.
T Consensus 139 l~~~~~~~~~ 148 (201)
T COG1422 139 LRWFVGTGGY 148 (201)
T ss_pred HHHHHccCcc
Confidence 887 555543
No 39
>COG5074 t-SNARE complex subunit, syntaxin [Intracellular trafficking and secretion]
Probab=62.63 E-value=12 Score=31.26 Aligned_cols=55 Identities=13% Similarity=0.017 Sum_probs=25.0
Q ss_pred hHHHHHhhhccchhHHHHhHHHHHHchhchHHHHHHHHHHHhhcccc-CCchHHHHHHH
Q 027525 137 NLSKLNANRGQDLDIVIEHMYQIVERKRQSEISEEILTATRKHVSSI-WGSPRLEVIAL 194 (222)
Q Consensus 137 kl~~i~~~v~~vk~im~~Ni~~il~Rge~le~L~~kt~~L~~~s~~F-~~a~kl~r~~w 194 (222)
.|+++-+.+++...-=.+|+|.+-.. +++-...++.-..+...= +.+++-|.+=|
T Consensus 196 el~qLfndm~~~V~eq~e~Vd~I~~~---~~~~~~n~~~g~~h~d~AvksaRaaRkkki 251 (280)
T COG5074 196 ELTQLFNDMEELVIEQQENVDVIDKN---VEDAQENVEQGVGHTDKAVKSARAARKKKI 251 (280)
T ss_pred HHHHHHHHHHHHHHhhcchHHHHHhh---HhhHHhhHHHhhhhHHHHHHHHHHHHhcce
Confidence 34444444444433334555555433 233333334444444433 44555555555
No 40
>TIGR00060 L18_bact ribosomal protein L18, bacterial type. The archaeal and eukaryotic type rpL18 is not detectable under this model.
Probab=61.77 E-value=35 Score=25.27 Aligned_cols=60 Identities=10% Similarity=0.040 Sum_probs=38.7
Q ss_pred EEEEEEEecCCeeeeeeccCCCC--CCCChhHHHHHHHHHHHHcCCCCCCCCceEEEEcCeEEE
Q 027525 3 KMTIVGRVSDGLPLARGPRYLNQ--EHDSFSFYKQQAEFILKEISRGALAPSKMTIRVDHHSFH 64 (222)
Q Consensus 3 ~y~~IaR~~d~~iLae~~~~~~~--~~~~~~~~~~~a~~il~~i~~~~~~~~k~s~~~~~~~~h 64 (222)
+|+.|.-..++.+||..++.... ..+|.+....+...+.++..... -.+..+..++|.||
T Consensus 36 iyaQiIdd~~~~tlasaST~ek~~~~~~n~~aA~~vG~~la~ra~~~g--i~~vvfDrgg~~Yh 97 (114)
T TIGR00060 36 IYAQVIDDSKSEVLASASTLEKKLKYTGNKDAAKKVGKLVAERLKEKG--IKDVVFDRGGYKYH 97 (114)
T ss_pred EEEEEEECCCCEEEEEEecchhhhcCCCCHHHHHHHHHHHHHHHHHCC--CCEEEEeCCCCcch
Confidence 57778776677888877653111 24566655566666666655432 45677788888887
No 41
>PF03164 Mon1: Trafficking protein Mon1; InterPro: IPR004353 Members of this family have been called SAND proteins [] although these proteins do not contain a SAND domain. In Saccharomyces cerevisiae a protein complex of Mon1 and Ccz1 functions with the small GTPase Ypt7 to mediate vesicle trafficking to the vacuole [, ]. The Mon1/Ccz1 complex is conserved in eukaryotic evolution and members of this family (previously known as DUF254) are distant homologues to domains of known structure that assemble into cargo vesicle adapter (AP) complexes [, ].
Probab=61.76 E-value=98 Score=28.12 Aligned_cols=66 Identities=11% Similarity=0.099 Sum_probs=52.3
Q ss_pred HHHHHHHHHcCCCCCCCCceEEEEcCeEEEEEeeCCcEEEEEEeCCCCChHHHHHHHHHHHHHH-hcchh
Q 027525 35 QQAEFILKEISRGALAPSKMTIRVDHHSFHYLMENGIGCFITLCDSSYPRKLAFHYLQDLQKEF-QKFDI 103 (222)
Q Consensus 35 ~~a~~il~~i~~~~~~~~k~s~~~~~~~~h~l~~~~~~~~~cvtd~~~p~~~af~fL~ei~~~F-~~~~~ 103 (222)
.+.+.++....... +.-.++..|+..|.|+..+. +.++||+..+.|...-..-|+-+.... +....
T Consensus 39 g~~~aiiS~~~~~~--d~l~~i~~~~~~ivfl~r~p-l~lv~vS~~~e~~~~l~~qL~~ly~qils~lt~ 105 (415)
T PF03164_consen 39 GVIQAIISFFQSNG--DELRSIRAGDHRIVFLNRGP-LILVAVSKTGESESQLRKQLDYLYSQILSILTK 105 (415)
T ss_pred HHHHHHHHHHHhCC--CcEEEEEeCCEEEEEEecCC-EEEEEEcCCcCCHHHHHHHHHHHHHHHHHhccH
Confidence 57777777665442 55667888999999999999 999999999999887778888888777 55543
No 42
>KOG3385 consensus V-SNARE [Intracellular trafficking, secretion, and vesicular transport]
Probab=61.40 E-value=17 Score=26.86 Aligned_cols=19 Identities=5% Similarity=0.029 Sum_probs=13.5
Q ss_pred hhhHHHHHhhhccchhHHH
Q 027525 135 QANLSKLNANRGQDLDIVI 153 (222)
Q Consensus 135 ~dkl~~i~~~v~~vk~im~ 153 (222)
...+..+++.|...|..-.
T Consensus 35 ee~~e~L~~kV~aLKsLs~ 53 (118)
T KOG3385|consen 35 EEAAESLQQKVKALKSLSL 53 (118)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3567788888888777743
No 43
>PF11657 Activator-TraM: Transcriptional activator TraM
Probab=60.90 E-value=75 Score=24.52 Aligned_cols=44 Identities=9% Similarity=0.053 Sum_probs=25.2
Q ss_pred EeCCCCChHHHHHHHHHHHHHH-hcchhhhhcccCCCcccccchHHHHHHHHhcc
Q 027525 77 LCDSSYPRKLAFHYLQDLQKEF-QKFDISLIDKITRPYSCVKFESIIGNIRKQYV 130 (222)
Q Consensus 77 vtd~~~p~~~af~fL~ei~~~F-~~~~~~~~~~~~~~~~~~~f~~~l~~~~~~yn 130 (222)
+-+++-|--+.....+.+.++. +.... .+..|...+..+..++.
T Consensus 19 ~L~~DDPILil~TiNe~ll~~~~~aq~~----------~l~~fk~elE~~~~~w~ 63 (144)
T PF11657_consen 19 ALSRDDPILILQTINERLLEDSAKAQQE----------QLDQFKEELEEIASRWG 63 (144)
T ss_pred ccCCCCchHHHHHHHHHHHHHHHHHHHH----------HHHHHHHHHHHHHHHHH
Confidence 3456777777666666666555 33321 11256666766666554
No 44
>COG5122 TRS23 Transport protein particle (TRAPP) complex subunit [Intracellular trafficking and secretion]
Probab=60.73 E-value=66 Score=23.82 Aligned_cols=84 Identities=12% Similarity=0.212 Sum_probs=48.3
Q ss_pred HHHHHcCCCCCCCCceEEEEcCeEEEEEe-eCCcEEEEEEeCCCCChHHHHHHHHHHHHHHhcchhhhhccc--CCCccc
Q 027525 39 FILKEISRGALAPSKMTIRVDHHSFHYLM-ENGIGCFITLCDSSYPRKLAFHYLQDLQKEFQKFDISLIDKI--TRPYSC 115 (222)
Q Consensus 39 ~il~~i~~~~~~~~k~s~~~~~~~~h~l~-~~~~~~~~cvtd~~~p~~~af~fL~ei~~~F~~~~~~~~~~~--~~~~~~ 115 (222)
.|+.++.|--...++.....++++.|+.. ..| .-|+.++.+ -+...+|+ |+.+...|++|... .... .-|-.+
T Consensus 45 aI~tq~~p~~gssg~~~l~~~~f~m~I~qT~TG-~kFV~~~~k-~t~na~~q-l~kiY~lYsdYV~k-nPfys~EMPI~c 120 (134)
T COG5122 45 AILTQTIPLPGSSGRLVLYFRNFVMTIFQTTTG-TKFVFVAEK-RTVNALFQ-LQKIYSLYSDYVTK-NPFYSPEMPIQC 120 (134)
T ss_pred hhhhhcccCCCCCceEEEEeccEEEEEEEecCC-cEEEEEecC-CchhHHHH-HHHHHHHHHHHhhc-CCCCCcccceeh
Confidence 34444444111168888899999988654 588 999999943 34444555 55566555555321 0000 123334
Q ss_pred ccchHHHHHHH
Q 027525 116 VKFESIIGNIR 126 (222)
Q Consensus 116 ~~f~~~l~~~~ 126 (222)
+.|++.+|+..
T Consensus 121 ~lFde~lkrm~ 131 (134)
T COG5122 121 SLFDEHLKRMF 131 (134)
T ss_pred hhhhHHHHHHh
Confidence 46888777654
No 45
>PF05478 Prominin: Prominin; InterPro: IPR008795 The prominins are an emerging family of proteins that, among the multispan membrane proteins, display a novel topology. Mouse and Homo sapiens prominin and (Mus musculus) prominin-like 1 (PROML1) are predicted to contain five membrane spanning domains, with an N-terminal domain exposed to the extracellular space followed by four, alternating small cytoplasmic and large extracellular, loops and a cytoplasmic C-terminal domain []. The exact function of prominin is unknown although in humans defects in PROM1, the gene coding for prominin, cause retinal degeneration [].; GO: 0016021 integral to membrane
Probab=60.11 E-value=49 Score=32.77 Aligned_cols=8 Identities=25% Similarity=0.650 Sum_probs=3.2
Q ss_pred hhhHHHHH
Q 027525 195 KWTPIAII 202 (222)
Q Consensus 195 K~~~i~~~ 202 (222)
+|..-+++
T Consensus 413 R~~~~lil 420 (806)
T PF05478_consen 413 RWIVGLIL 420 (806)
T ss_pred HHHHHHHH
Confidence 34433333
No 46
>PF03908 Sec20: Sec20; InterPro: IPR005606 Sec20 is a membrane glycoprotein associated with secretory pathway.
Probab=57.67 E-value=33 Score=24.01 Aligned_cols=74 Identities=9% Similarity=0.166 Sum_probs=36.1
Q ss_pred hHHHHHhhhccchhHHHHhHHHHHHchhchHHHHHHHHH----HHhhcc---cc-CCchHHHHHHHhhhHHHHHHHHHHH
Q 027525 137 NLSKLNANRGQDLDIVIEHMYQIVERKRQSEISEEILTA----TRKHVS---SI-WGSPRLEVIALKWTPIAIIVAVAAI 208 (222)
Q Consensus 137 kl~~i~~~v~~vk~im~~Ni~~il~Rge~le~L~~kt~~----L~~~s~---~F-~~a~kl~r~~wK~~~i~~~~~~~~~ 208 (222)
.+..+.+.+.+..+-...|++.+-+--+.|..+.+.-+. |..+.+ .+ ++...=+.-+| ..++++++++++
T Consensus 9 ~L~rt~~~m~~ev~~s~~t~~~L~~Ss~~L~~~~~e~~~~~~~l~~s~~ll~~l~r~~~~D~~li~--~~~~~f~~~v~y 86 (92)
T PF03908_consen 9 SLRRTRQMMAQEVERSELTLQTLEESSATLRSTNDEYDGQSSLLKKSRKLLKKLERRDKTDRILIF--FAFLFFLLVVLY 86 (92)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHH--HHHHHHHHHHHH
Confidence 444555555555555555555555555555444443332 222222 34 33333333334 556666666677
Q ss_pred HHHH
Q 027525 209 LLWA 212 (222)
Q Consensus 209 ~i~~ 212 (222)
++|=
T Consensus 87 I~~r 90 (92)
T PF03908_consen 87 ILWR 90 (92)
T ss_pred Hhhh
Confidence 7764
No 47
>COG5325 t-SNARE complex subunit, syntaxin [Intracellular trafficking and secretion]
Probab=57.03 E-value=50 Score=28.29 Aligned_cols=42 Identities=10% Similarity=-0.034 Sum_probs=30.7
Q ss_pred hhHHHHHhhhccchhHHHHhHHHHHHchhchHHHHHHHHHHH
Q 027525 136 ANLSKLNANRGQDLDIVIEHMYQIVERKRQSEISEEILTATR 177 (222)
Q Consensus 136 dkl~~i~~~v~~vk~im~~Ni~~il~Rge~le~L~~kt~~L~ 177 (222)
..+.++..-|.|+..|-++==.-+.+-|+-+|.++-.-++++
T Consensus 195 ~eI~~l~~gI~Eln~IF~dL~~lV~eQG~lVdrID~Ni~~t~ 236 (283)
T COG5325 195 EEIKNLARGIYELNEIFRDLGSLVGEQGELVDRIDFNIENTS 236 (283)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHhhhhhhhh
Confidence 457777777888888877777778889988887765544433
No 48
>PF01099 Uteroglobin: Uteroglobin family; InterPro: IPR006038 Uteroglobin (or blastokinin) is a mammalian steroid-inducible secreted protein originally isolated from the uterus of rabbits during early pregnancy. The mucosal epithelia of several organs that communicate with the external environment express uteroglobin. Its tissue-specific expression is regulated by steroid hormones, and is augmented in the uterus by non-steroidal prolactin. Uteroglobin may be a multi-functional protein with anti-inflammatory/immunomodulatory properties, acting to inhibit phospholipase A2 activity, and binding to (and possibly sequestering) several hydrophobic ligands such as progesterone, retinols, polychlorinated biphenyls, phospholipids and prostaglandins. In addition, uteroglobin has anti-chemotactic, anti-allergic, anti-tumourigenic and embryo growth-stimulatory properties. Uteroglobin may have a homeostatic role against oxidative damage, inflammation, autoimmunity and cancer [, , , ]. Uteroglobin consists of a disulphide-linked dimer of two identical polypeptides, each polypeptide being composed of four helices. It is a member of the secretoglobin superfamily. This entry represents uteroglobin proteins from several mammalian species, as well as other members of the secretoglobin superfamily, such as lipophilin B [], prostatic steroid-binding protein [], mammaglobin [], and the related allergen Fel d 1 (Felis domesticus allergen 1) [].; GO: 0005488 binding, 0005576 extracellular region; PDB: 1UTR_B 1CCD_A 1UTG_A 2UTG_A 1ZKR_B 1PUO_B 2EJN_B.
Probab=53.27 E-value=33 Score=22.54 Aligned_cols=43 Identities=9% Similarity=0.079 Sum_probs=31.6
Q ss_pred HHHHHHHHhccCc-hhhhhHHHHHhhhccchhHHHHhHHHHHHc
Q 027525 120 SIIGNIRKQYVDT-RTQANLSKLNANRGQDLDIVIEHMYQIVER 162 (222)
Q Consensus 120 ~~l~~~~~~yn~~-~~~dkl~~i~~~v~~vk~im~~Ni~~il~R 162 (222)
+..+...++|+.+ .......++++-+++...-=..||.++|++
T Consensus 17 ~~Y~~~l~~y~~~~~~~~A~~~lK~C~d~ls~e~~~~i~~~l~~ 60 (67)
T PF01099_consen 17 EEYKESLQKYNPPPEAVEAKLELKQCVDKLSNETRENILKLLEK 60 (67)
T ss_dssp HHHHHHHHCC---HHHHHHHHHHHHHHTTS-HHHHHHHHHHHHH
T ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 4566677788754 456789999999999998888999888874
No 49
>PRK10884 SH3 domain-containing protein; Provisional
Probab=53.08 E-value=70 Score=26.20 Aligned_cols=44 Identities=9% Similarity=0.034 Sum_probs=20.1
Q ss_pred hHHHHHhhhccchhHHHHhHHHHHHchhchHHHHHHHHHHHhhcccc
Q 027525 137 NLSKLNANRGQDLDIVIEHMYQIVERKRQSEISEEILTATRKHVSSI 183 (222)
Q Consensus 137 kl~~i~~~v~~vk~im~~Ni~~il~Rge~le~L~~kt~~L~~~s~~F 183 (222)
++..+.++.++.+.-|.+-++. +...+++|....+.|+.+-..-
T Consensus 108 ~l~~~~~~~~~~~~~l~~~~~~---~~~~~~~L~~~n~~L~~~l~~~ 151 (206)
T PRK10884 108 KLNNIDNTWNQRTAEMQQKVAQ---SDSVINGLKEENQKLKNQLIVA 151 (206)
T ss_pred HHHHHHhHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHH
Confidence 4444444444444444332222 3444555555555555544433
No 50
>PRK12430 putative bifunctional flagellar biosynthesis protein FliO/FliP; Provisional
Probab=50.46 E-value=24 Score=31.46 Aligned_cols=38 Identities=11% Similarity=-0.052 Sum_probs=27.3
Q ss_pred chHHHHHHHHHHHhhcccc-CCchHHHHHHH-hhhHHHHH
Q 027525 165 QSEISEEILTATRKHVSSI-WGSPRLEVIAL-KWTPIAII 202 (222)
Q Consensus 165 ~le~L~~kt~~L~~~s~~F-~~a~kl~r~~w-K~~~i~~~ 202 (222)
..|+..+|+.+---.++.| .+-+..+|-+| |...+-++
T Consensus 102 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 141 (379)
T PRK12430 102 SKDEVIKKTNDTLLQKNNFNRSLKNFSKTSWKKTMFYRII 141 (379)
T ss_pred chhHHHHhhhhhhccccccchhHHHHHHHHHHHHHHHHHH
Confidence 4455566666666677889 77788999999 76666655
No 51
>KOG1693 consensus emp24/gp25L/p24 family of membrane trafficking proteins [Intracellular trafficking, secretion, and vesicular transport]
Probab=50.06 E-value=62 Score=26.41 Aligned_cols=56 Identities=13% Similarity=0.125 Sum_probs=29.9
Q ss_pred hhchHHHHHHHHHHHh-hccccCCchHHHH-HHH-hhhHHHHHHHHHHH-HHHHHHhcCC
Q 027525 163 KRQSEISEEILTATRK-HVSSIWGSPRLEV-IAL-KWTPIAIIVAVAAI-LLWANLVLTD 218 (222)
Q Consensus 163 ge~le~L~~kt~~L~~-~s~~F~~a~kl~r-~~w-K~~~i~~~~~~~~~-~i~~~~~~~~ 218 (222)
++.|..+.+--..++. ++....++..++. -|| -...+++++++.+. ++.++||-+|
T Consensus 144 ~~~L~~I~~~q~y~R~RE~rn~~tv~st~~Rv~~~Sl~e~~~vv~iSi~Qv~ilk~fFt~ 203 (209)
T KOG1693|consen 144 HRALNKIDDTQTYYRLREARNRSTVESTNSRVTWWSLLEIIAVVVISIAQVFILKFFFTD 203 (209)
T ss_pred HHHHHHHHHHHHHHHHHHhcCccchhcccchhhHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 4455555555555544 3444444444443 345 55555555566555 7777885544
No 52
>KOG3156 consensus Uncharacterized membrane protein [Function unknown]
Probab=49.75 E-value=42 Score=27.64 Aligned_cols=35 Identities=11% Similarity=0.077 Sum_probs=26.1
Q ss_pred hhHHHHHhhhccchhHHHHhHHHHHHchhchHHHHH
Q 027525 136 ANLSKLNANRGQDLDIVIEHMYQIVERKRQSEISEE 171 (222)
Q Consensus 136 dkl~~i~~~v~~vk~im~~Ni~~il~Rge~le~L~~ 171 (222)
..-.+++.+||.+|.-.++-++++.. |.|||.=-+
T Consensus 123 ~e~EklkndlEk~ks~lr~ei~~~~a-~~rLdLNLE 157 (220)
T KOG3156|consen 123 AENEKLKNDLEKLKSSLRHEISKTTA-EFRLDLNLE 157 (220)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcch-hceeecchh
Confidence 35678999999999999999988865 555554333
No 53
>PF10717 ODV-E18: Occlusion-derived virus envelope protein ODV-E18; InterPro: IPR019655 Baculovirus occlusion-derived virus (ODV) derives its envelope from an intranuclear membrane source. Occlusion-derived viral envelope proteins that are detected in viral-induced intranuclear microvesicles, but not detected in the plasma membrane, cytoplasmic membranes, or the nuclear envelope. This entry represents ODV-E18 protein which is encoded by baculovirus late genes with transcription initiating from a TAAG motif. ODV-E18 exists as a dimer in the ODV envelope, which contains a hydrophobic domain that putatively acts as a target or retention signal for intranuclear microvesicles []. ; GO: 0019031 viral envelope
Probab=48.41 E-value=20 Score=24.90 Aligned_cols=17 Identities=6% Similarity=0.159 Sum_probs=6.3
Q ss_pred HHHHHHHHHHHHHhcCC
Q 027525 202 IVAVAAILLWANLVLTD 218 (222)
Q Consensus 202 ~~~~~~~~i~~~~~~~~ 218 (222)
++|++|+++++---++|
T Consensus 34 LVIIiLlImlfqsSS~~ 50 (85)
T PF10717_consen 34 LVIIILLIMLFQSSSNG 50 (85)
T ss_pred HHHHHHHHHHHhccCCC
Confidence 33333333333324444
No 54
>PRK05593 rplR 50S ribosomal protein L18; Reviewed
Probab=48.25 E-value=67 Score=23.82 Aligned_cols=60 Identities=12% Similarity=0.067 Sum_probs=37.7
Q ss_pred EEEEEEEecCCeeeeeeccCCCC-----CCCChhHHHHHHHHHHHHcCCCCCCCCceEEEEcCeEEE
Q 027525 3 KMTIVGRVSDGLPLARGPRYLNQ-----EHDSFSFYKQQAEFILKEISRGALAPSKMTIRVDHHSFH 64 (222)
Q Consensus 3 ~y~~IaR~~d~~iLae~~~~~~~-----~~~~~~~~~~~a~~il~~i~~~~~~~~k~s~~~~~~~~h 64 (222)
+|+.|....++.+||..++.... ..+|-+....+...+.++..... -...++..++|.||
T Consensus 36 iyAQvidd~~~~tl~saST~e~~~k~~~~~~n~~aa~~vG~~la~ra~~~g--i~~vvfDrg~~~yh 100 (117)
T PRK05593 36 IYAQVIDDVKGKTLASASTLEKDVRAGLKGGNKEAAKKVGKLIAERAKAKG--IKQVVFDRGGYKYH 100 (117)
T ss_pred EEEEEEECCCCEEEEEEecCcHhHhccccCCCHHHHHHHHHHHHHHHHHCC--CCEEEEcCCCCccc
Confidence 57877776677777776653111 14566656677777777644421 45677777788776
No 55
>KOG3202 consensus SNARE protein TLG1/Syntaxin 6 [Intracellular trafficking, secretion, and vesicular transport]
Probab=48.07 E-value=1.1e+02 Score=25.55 Aligned_cols=58 Identities=17% Similarity=0.137 Sum_probs=38.1
Q ss_pred hhHHHHHhhhccchhHHHHhHHHHHHchhch-----HHHHHHHHHHHhhcccc-CCchHHHHHH
Q 027525 136 ANLSKLNANRGQDLDIVIEHMYQIVERKRQS-----EISEEILTATRKHVSSI-WGSPRLEVIA 193 (222)
Q Consensus 136 dkl~~i~~~v~~vk~im~~Ni~~il~Rge~l-----e~L~~kt~~L~~~s~~F-~~a~kl~r~~ 193 (222)
+.+.+.|+++=+=+++.-++|.+-+.|-..+ ++|++++.-|.+-+..+ ..-.+|+|.+
T Consensus 137 ~~~~~~qqqm~~eQDe~Ld~ls~ti~rlk~~a~~~g~EL~~Q~~llDdl~~e~d~t~srl~~~~ 200 (235)
T KOG3202|consen 137 QEIVQLQQQMLQEQDEGLDGLSATVQRLKGMALAMGEELEEQGRLLDDLDNEMDRTESRLDRVM 200 (235)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5677888888888888888888888775444 45555555555555555 4444554444
No 56
>PF12352 V-SNARE_C: Snare region anchored in the vesicle membrane C-terminus; PDB: 1GL2_C 2NPS_C.
Probab=46.08 E-value=41 Score=21.72 Aligned_cols=47 Identities=9% Similarity=0.123 Sum_probs=38.8
Q ss_pred hhhHHHHHhhhccchhHHHHhHHHHHHchhchHHHHHHHHHHHhhcc
Q 027525 135 QANLSKLNANRGQDLDIVIEHMYQIVERKRQSEISEEILTATRKHVS 181 (222)
Q Consensus 135 ~dkl~~i~~~v~~vk~im~~Ni~~il~Rge~le~L~~kt~~L~~~s~ 181 (222)
.+.|.....-++++.++-.+..+.+-+-++.|....+|..++...-.
T Consensus 7 ~~~L~~s~~~~~e~~~~g~~~l~~L~~Qre~L~~~~~kl~~i~~~l~ 53 (66)
T PF12352_consen 7 SDSLQRSHRMADETEEIGAATLEDLRSQREQLKRVRDKLDDIDSNLP 53 (66)
T ss_dssp HCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 46788888889999999999999999989988888888777766543
No 57
>smart00096 UTG Uteroglobin.
Probab=46.01 E-value=57 Score=21.88 Aligned_cols=41 Identities=12% Similarity=0.034 Sum_probs=31.1
Q ss_pred HHHHHHhccC-chhhhhHHHHHhhhccchhHHHHhHHHHHHc
Q 027525 122 IGNIRKQYVD-TRTQANLSKLNANRGQDLDIVIEHMYQIVER 162 (222)
Q Consensus 122 l~~~~~~yn~-~~~~dkl~~i~~~v~~vk~im~~Ni~~il~R 162 (222)
....++.||. |...+...++++-+|....-=+.||-++|++
T Consensus 21 Y~~~l~~y~~~~~~~ea~~~lK~cvD~L~~~~k~~i~~ll~k 62 (69)
T smart00096 21 YEASLKQFKPDPDMLEAGRQLKKLVDTLPQETRENILKLTEK 62 (69)
T ss_pred HHHHHHhcCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Confidence 4445567875 4556788999999999888888888888764
No 58
>PF01105 EMP24_GP25L: emp24/gp25L/p24 family/GOLD; InterPro: IPR009038 The GOLD (for Golgi dynamics) domain is a protein module found in several eukaryotic Golgi and lipid-traffic proteins. It is typically between 90 and 150 amino acids long. Most of the size difference observed in the GOLD-domain superfamily is traceable to a single large low-complexity insert that is seen in some versions of the domain. With the exception of the p24 proteins, which have a simple architecture with the GOLD domain as their only globular domain, all other GOLD-domain proteins contain additional conserved globular domains. In these proteins, the GOLD domain co-occurs with lipid-, sterol- or fatty acid-binding domains such as PH, CRAL-TRIO, FYVE oxysterol binding- and acyl CoA-binding domains, suggesting that these proteins may interact with membranes. The GOLD domain can also be found associated with a RUN domain, which may have a role in the interaction of various proteins with cytoskeletal filaments. The GOLD domain is predicted to mediate diverse protein-protein interactions []. A secondary structure prediction for the GOLD domain reveals that it is likely to adopt a compact all-beta-fold structure with six to seven strands. Most of the sequence conservation is centred on the hydrophobic cores that support these predicted strands. The predicted secondary-structure elements and the size of the conserved core of the domain suggests that it may form a beta- sandwich fold with the strands arranged in two beta sheets stacked on each other []. Some proteins known to contain a GOLD domain are listed below: Eukaryotic proteins of the p24 family. Animal Sec14-like proteins. They are involved in secretion. Human Golgi resident protein GCP60. It interacts with the Golgi integral membrane protein Giantin. Yeast oxysterol-binding protein homologue 3 (OSH3). ; GO: 0006810 transport, 0016021 integral to membrane; PDB: 1P23_A 1M23_A.
Probab=45.07 E-value=7.1 Score=30.15 Aligned_cols=28 Identities=4% Similarity=-0.156 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHhhcccc-CCchHHHHHHH
Q 027525 167 EISEEILTATRKHVSSI-WGSPRLEVIAL 194 (222)
Q Consensus 167 e~L~~kt~~L~~~s~~F-~~a~kl~r~~w 194 (222)
..+.+..+.+...-..+ ....+.++++|
T Consensus 129 ~~i~~~q~~~~~r~~~~~~~~es~~~~i~ 157 (183)
T PF01105_consen 129 KEIKDEQKYLREREERHRQLNESTNSRIM 157 (183)
T ss_dssp -----------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhheEE
Confidence 33344444444444445 55566667775
No 59
>cd07912 Tweety_N N-terminal domain of the protein encoded by the Drosophila tweety gene and related proteins, a family of chloride ion channels. The protein product of the Drosophila tweety (tty) gene is thought to form a trans-membrane protein with five membrane-spanning regions and a cytoplasmic C-terminus. This N-terminal domain contains the putative transmembrane spanning regions. Tweety has been suggested as a candidate for a large conductance chloride channel, both in vertebrate and insect cells. Three human homologs have been identified and designated TTYH1-3. TTYH2 has been associated with the progression of cancer, and Drosophila melanogaster tweety has been assumed to play a role in development. TTYH2, and TTYH3 bind to and are ubiquinated by Nedd4-2, a HECT type E3 ubiquitin ligase, which most likely plays a role in controlling the cellular levels of tweety family proteins.
Probab=44.50 E-value=2.2e+02 Score=26.03 Aligned_cols=39 Identities=0% Similarity=-0.024 Sum_probs=19.8
Q ss_pred cchHHHHHHHHhccCchhhhhHHHHHhhhccchhHHHHhHH
Q 027525 117 KFESIIGNIRKQYVDTRTQANLSKLNANRGQDLDIVIEHMY 157 (222)
Q Consensus 117 ~f~~~l~~~~~~yn~~~~~dkl~~i~~~v~~vk~im~~Ni~ 157 (222)
+|...+.+..+..++ .+.-++.+.++++.+...|..+++
T Consensus 106 ~~h~gV~~t~~si~~--an~tv~~l~nqv~~l~~al~~t~~ 144 (418)
T cd07912 106 ETHDGVVQLTYSLRN--ANHTVAGIDNQTSDTEASLNVTVE 144 (418)
T ss_pred HHhhhHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHhhhhh
Confidence 444444444443322 234556666666666665555544
No 60
>KOG2635 consensus Medium subunit of clathrin adaptor complex [Intracellular trafficking, secretion, and vesicular transport]
Probab=43.76 E-value=2.7e+02 Score=25.76 Aligned_cols=44 Identities=7% Similarity=0.034 Sum_probs=30.9
Q ss_pred CCceEEEEcCeEEEEEeeCCcEEEEEEeCCCCChHHHHHHHHHHH
Q 027525 51 PSKMTIRVDHHSFHYLMENGIGCFITLCDSSYPRKLAFHYLQDLQ 95 (222)
Q Consensus 51 ~~k~s~~~~~~~~h~l~~~~~~~~~cvtd~~~p~~~af~fL~ei~ 95 (222)
.+-..++.+.+-|-|-.-+. +-++.||...+.--....-|.-+.
T Consensus 44 ~qhT~vEt~~VRYVYqP~d~-lY~vLITtk~SNIleDl~TL~Lfs 87 (512)
T KOG2635|consen 44 KQHTFVETDSVRYVYQPLDN-LYIVLITTKQSNILEDLETLRLFS 87 (512)
T ss_pred CCccEEecccEEEEEEeccc-EEEEEEeccccchhhHHHHHHHHH
Confidence 34456677777777777788 999999999987665555554433
No 61
>PHA03240 envelope glycoprotein M; Provisional
Probab=42.98 E-value=21 Score=29.48 Aligned_cols=18 Identities=33% Similarity=0.549 Sum_probs=8.7
Q ss_pred hHHHHHHHHHHHHHHHHH
Q 027525 197 TPIAIIVAVAAILLWANL 214 (222)
Q Consensus 197 ~~i~~~~~~~~~~i~~~~ 214 (222)
.+++++++++++++|+++
T Consensus 216 IiilIIiIiIIIL~cfKi 233 (258)
T PHA03240 216 IFIAIIIIIVIILFFFKI 233 (258)
T ss_pred HHHHHHHHHHHHHHHHhc
Confidence 344444444445566654
No 62
>PHA02650 hypothetical protein; Provisional
Probab=42.79 E-value=50 Score=22.71 Aligned_cols=16 Identities=6% Similarity=-0.147 Sum_probs=7.2
Q ss_pred hHHHHHHHhhhHHHHH
Q 027525 187 PRLEVIALKWTPIAII 202 (222)
Q Consensus 187 ~kl~r~~wK~~~i~~~ 202 (222)
+..+..-|++.+++++
T Consensus 42 ~~~~~~~~~~~ii~i~ 57 (81)
T PHA02650 42 KSVSWFNGQNFIFLIF 57 (81)
T ss_pred cccCCchHHHHHHHHH
Confidence 3334444545544443
No 63
>COG4499 Predicted membrane protein [Function unknown]
Probab=42.60 E-value=34 Score=30.78 Aligned_cols=52 Identities=13% Similarity=0.182 Sum_probs=25.5
Q ss_pred hhchHHHHHHHHH-HHhhcccc-CCchHHHHHHH---hhhHHHHHHHHHHHHHHHHH
Q 027525 163 KRQSEISEEILTA-TRKHVSSI-WGSPRLEVIAL---KWTPIAIIVAVAAILLWANL 214 (222)
Q Consensus 163 ge~le~L~~kt~~-L~~~s~~F-~~a~kl~r~~w---K~~~i~~~~~~~~~~i~~~~ 214 (222)
.+.+++|-+--+. ...+.... ++=-.+.+.=| ||..+..+++++++++|+.+
T Consensus 184 a~Tld~l~e~i~e~~~kE~e~~~kn~a~VpK~k~~ifk~~giGliillvl~li~~~Y 240 (434)
T COG4499 184 AETLDDLAEFIDEEYQKETEKINKNYAFVPKKKYTIFKYFGIGLIILLVLLLIYFTY 240 (434)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHhcceeecccccceehhhHHHhHHHHHHHHHHHHHH
Confidence 3344444333333 44444445 45444445556 88777555555455554443
No 64
>KOG2678 consensus Predicted membrane protein [Function unknown]
Probab=41.78 E-value=45 Score=27.72 Aligned_cols=43 Identities=7% Similarity=-0.060 Sum_probs=17.5
Q ss_pred HHHHHHhhcccc-CCchHHHHHHH-hhhHHHHHHHHHHH-HHHHHHh
Q 027525 172 ILTATRKHVSSI-WGSPRLEVIAL-KWTPIAIIVAVAAI-LLWANLV 215 (222)
Q Consensus 172 kt~~L~~~s~~F-~~a~kl~r~~w-K~~~i~~~~~~~~~-~i~~~~~ 215 (222)
.++.|...|..- +-+++ ++-.| +|..|+++++.+++ ++...+|
T Consensus 195 N~~~L~~~Serve~y~ks-k~s~wf~~~miI~v~~sFVsMiliiqif 240 (244)
T KOG2678|consen 195 NSQGLMDVSERVEKYDKS-KLSYWFYITMIIFVILSFVSMILIIQIF 240 (244)
T ss_pred HHHHHHhhhHHHHHHHHh-hhhHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 334444444444 33322 12446 55544443332222 4544444
No 65
>PF06008 Laminin_I: Laminin Domain I; InterPro: IPR009254 Laminins are glycoproteins that are major constituents of the basement membrane of cells. Laminins are trimeric molecules; laminin-1 is an alpha1 beta1 gamma1 trimer. It has been suggested that the domains I and II from laminin A, B1 and B2 may come together to form a triple helical coiled-coil structure []. Binding to cells via a high affinity receptor, laminin is thought to mediate the attachment, migration and organisation of cells into tissues during embryonic development by interacting with other extracellular matrix components.; GO: 0005102 receptor binding, 0030155 regulation of cell adhesion, 0030334 regulation of cell migration, 0045995 regulation of embryonic development, 0005606 laminin-1 complex
Probab=41.04 E-value=1.5e+02 Score=24.82 Aligned_cols=44 Identities=14% Similarity=-0.009 Sum_probs=22.4
Q ss_pred hhHHHHHhhhccchhHHHHhHHHHHHchhchHHHHHHHHHHHhh
Q 027525 136 ANLSKLNANRGQDLDIVIEHMYQIVERKRQSEISEEILTATRKH 179 (222)
Q Consensus 136 dkl~~i~~~v~~vk~im~~Ni~~il~Rge~le~L~~kt~~L~~~ 179 (222)
+|+..++.-+++..+...+--+.--.+..+++++.+|-+.++..
T Consensus 192 ~kL~Dl~~~l~eA~~~~~ea~~ln~~n~~~l~~~~~k~~~l~~~ 235 (264)
T PF06008_consen 192 AKLQDLRDLLNEAQNKTREAEDLNRANQKNLEDLEKKKQELSEQ 235 (264)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45555555555555555444444444455555555555544443
No 66
>PF01601 Corona_S2: Coronavirus S2 glycoprotein; InterPro: IPR002552 The type I glycoprotein S of Coronavirus, trimers of which constitute the typical viral spikes, is assembled into virions through noncovalent interactions with the M protein. The spike glycoprotein is translated as a large polypeptide that is subsequently cleaved to S1 IPR002551 from INTERPRO and S2 []. Both chimeric S proteins appeared to cause cell fusion when expressed individually, suggesting that they were biologically fully active []. The spike is a type I membrane glycoprotein that possesses a conserved transmembrane anchor and an unusual cysteine-rich (cys) domain that bridges the putative junction of the anchor and the cytoplasmic tail [].; GO: 0006944 cellular membrane fusion, 0046813 virion attachment, binding of host cell surface receptor, 0016021 integral to membrane, 0019031 viral envelope; PDB: 2BEQ_B 2FXP_A 1ZVB_A 1WNC_D 1ZV8_H 1ZV7_B 1WYY_B 1ZVA_A 2BEZ_F 1WDG_A ....
Probab=40.94 E-value=14 Score=35.03 Aligned_cols=14 Identities=21% Similarity=0.290 Sum_probs=0.7
Q ss_pred cchHHHHHHHHhcc
Q 027525 117 KFESIIGNIRKQYV 130 (222)
Q Consensus 117 ~f~~~l~~~~~~yn 130 (222)
+|++.+.++.+.+|
T Consensus 481 Dfnkel~e~~~n~n 494 (610)
T PF01601_consen 481 DFNKELDEIFKNLN 494 (610)
T ss_dssp ------------S-
T ss_pred ChHHHHHHHHHhcC
Confidence 67777777777664
No 67
>cd00633 Secretoglobin Secretoglobins are relatively small, secreted, disulphide-bridged dimeric proteins with encoding genes sharing substantial sequence similarity. Their family subunits may be grouped into five subfamilies, A-E. Uteroglobin (subfamily A), which is identical to Clara cell protein (CC10), forms a globular shaped homodimer with a large hydrophobic pocket located between the two dimers. The uteroglobin monomer structure is composed of four alpha helices that do not form a canonical four helix-bundle motif but rather a boomerang-shaped structure in which helices H1, H3, and H4 are able to bind a homodimeric partner. The hydrophobic pocket binds steroids, particularly progesterone, with high specificity. However, the true biological function of uteroglobin is poorly understood. In mammals, uteroglobin has immunosuppressive and anti-inflammatory properties through the inhibition of phospholipase A2. The other four main subfamilies of secretoglobins are found in heterodimeri
Probab=40.91 E-value=75 Score=20.75 Aligned_cols=43 Identities=9% Similarity=0.053 Sum_probs=32.2
Q ss_pred HHHHHHHHhccC-chhhhhHHHHHhhhccchhHHHHhHHHHHHc
Q 027525 120 SIIGNIRKQYVD-TRTQANLSKLNANRGQDLDIVIEHMYQIVER 162 (222)
Q Consensus 120 ~~l~~~~~~yn~-~~~~dkl~~i~~~v~~vk~im~~Ni~~il~R 162 (222)
..+....+.||. |.......++|+=+++...-=..|+-++|+.
T Consensus 17 ~~y~~~L~~f~~~~~~~~A~~~lK~C~d~~~~e~k~~~~~~m~~ 60 (67)
T cd00633 17 EEYKAELEKFNATPEAVEAKEKLKQCVDEQSLETKENIAKLLEK 60 (67)
T ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHHHhcCCHhHHHHHHHHHHH
Confidence 345666678875 5556789999999999877777787777763
No 68
>PF11337 DUF3139: Protein of unknown function (DUF3139); InterPro: IPR021486 This family of proteins with unknown function appears to be restricted to Firmicutes.
Probab=40.31 E-value=34 Score=23.59 Aligned_cols=10 Identities=10% Similarity=-0.164 Sum_probs=4.1
Q ss_pred HHHHHHHhcC
Q 027525 208 ILLWANLVLT 217 (222)
Q Consensus 208 ~~i~~~~~~~ 217 (222)
++.+..||.|
T Consensus 19 i~~~~~~~~~ 28 (85)
T PF11337_consen 19 IIGIYYFFNG 28 (85)
T ss_pred HHHHHHhhcC
Confidence 3344444444
No 69
>PHA02690 hypothetical protein; Provisional
Probab=38.49 E-value=1.3e+02 Score=20.71 Aligned_cols=14 Identities=21% Similarity=-0.059 Sum_probs=10.2
Q ss_pred ccc-CCchHHHHHHH
Q 027525 181 SSI-WGSPRLEVIAL 194 (222)
Q Consensus 181 ~~F-~~a~kl~r~~w 194 (222)
+.+ ..|+-+-|+||
T Consensus 28 qrhlEgs~plLR~~~ 42 (90)
T PHA02690 28 QRHLEGSTPLLRQMW 42 (90)
T ss_pred HHHHhcCCHHHHHHH
Confidence 345 66778888998
No 70
>PF13800 Sigma_reg_N: Sigma factor regulator N-terminal
Probab=38.43 E-value=51 Score=23.16 Aligned_cols=17 Identities=24% Similarity=0.249 Sum_probs=8.2
Q ss_pred hHHHHHH-HhhhHHHHHH
Q 027525 187 PRLEVIA-LKWTPIAIIV 203 (222)
Q Consensus 187 ~kl~r~~-wK~~~i~~~~ 203 (222)
+|-||+. ||+..+.+++
T Consensus 6 kK~K~k~~l~~~~isi~~ 23 (96)
T PF13800_consen 6 KKAKRKSRLRTVVISIIS 23 (96)
T ss_pred HHHHHHHHHHHHHHHHhh
Confidence 4455554 3555444443
No 71
>PF05739 SNARE: SNARE domain; InterPro: IPR000727 The process of vesicular fusion with target membranes depends on a set of SNAREs (SNAP-Receptors), which are associated with the fusing membranes [, ]. Target SNAREs (t-SNAREs) are localised on the target membrane and belong to two different families, the syntaxin-like family and the SNAP-25 like family. One member of each family, together with a v-SNARE localised on the vesicular membrane, are required for fusion. The Syntaxins are type-I transmembrane proteins that contain several regions with coiled-coil propensity in their cytosolic part, the SNARE motif. SNAP-25 (IPR000928 from INTERPRO) is a protein consisting of two coiled-coil regions, which is associated with the membrane by lipid anchors. SNARE motifs assemble into parallel four helix bundles stabilised by the burial of these hydrophobic helix faces in the bundle core. Monomeric SNARE motifs are disordered so this assembly reaction is accompanied by a dramatic increase in alpha-helical secondary structure []. The parallel arrangement of SNARE motifs within complexes bring the transmembrane anchors, and the two membranes, into close proximity. Recently, it was shown that the two coiled-coil regions of SNAP-25 and one of the coiled-coil regions of the syntaxins are related []. This domain is found in both Syntaxin and SNAP-25 families as well as in other proteins.; GO: 0005515 protein binding; PDB: 1URQ_B 3RL0_R 1HVV_B 1SFC_B 1N7S_B 3IPD_B 3C98_B 3HD7_F 3RK2_B 1KIL_B ....
Probab=37.86 E-value=92 Score=19.60 Aligned_cols=43 Identities=9% Similarity=0.093 Sum_probs=32.3
Q ss_pred hhHHHHHhhhccchhHHHHhHHHHHHchhchHHHHHHHHHHHh
Q 027525 136 ANLSKLNANRGQDLDIVIEHMYQIVERKRQSEISEEILTATRK 178 (222)
Q Consensus 136 dkl~~i~~~v~~vk~im~~Ni~~il~Rge~le~L~~kt~~L~~ 178 (222)
+.|..+...|.+++.++.+==+.+-+-|+-||.+.+..+....
T Consensus 4 ~~l~~l~~~i~~l~~~~~~i~~ev~~Q~~~ld~i~~~vd~~~~ 46 (63)
T PF05739_consen 4 EELDELEQSIQELKQMFQDIGEEVEEQNEMLDRIEDNVDRANE 46 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHCHhhHHHHHHHHHHHHH
Confidence 5678888888888888777667777778888888877665443
No 72
>CHL00139 rpl18 ribosomal protein L18; Validated
Probab=36.98 E-value=1.3e+02 Score=21.97 Aligned_cols=60 Identities=10% Similarity=0.056 Sum_probs=35.9
Q ss_pred EEEEEEEecCCeeeeeeccCCC------CCCCChhHHHHHHHHHHHHcCCCCCCCCceEEEEcCeEEE
Q 027525 3 KMTIVGRVSDGLPLARGPRYLN------QEHDSFSFYKQQAEFILKEISRGALAPSKMTIRVDHHSFH 64 (222)
Q Consensus 3 ~y~~IaR~~d~~iLae~~~~~~------~~~~~~~~~~~~a~~il~~i~~~~~~~~k~s~~~~~~~~h 64 (222)
+|+.|....++.+||..++... ...+|.+....+...+.++..... -+...+..++|.||
T Consensus 27 iyaQvidd~~g~tlasaST~ek~~~~~~~~~~n~~aA~~vG~lla~ra~~~g--i~~vvfDrgg~~yh 92 (109)
T CHL00139 27 IYAQIIDDTNGKTLVACSTLEPDVKSSLSSTSTCDASKLVGQKLAKKSLKKG--ITKVVFDRGGKLYH 92 (109)
T ss_pred EEEEEEECCCCCEEEEEecCchhhhccccCCCCHHHHHHHHHHHHHHHHHCC--CCEEEEcCCCCccc
Confidence 5777776445567766554310 124566655566666666655432 45677777788877
No 73
>PF10779 XhlA: Haemolysin XhlA; InterPro: IPR019715 Haemolysin XhlA is a cell-surface associated haemolysin that lyses the two most prevalent types of insect immune cells (granulocytes and plasmatocytes) as well as rabbit and horse erythrocytes [].
Probab=36.67 E-value=1.3e+02 Score=19.97 Aligned_cols=31 Identities=10% Similarity=0.099 Sum_probs=15.2
Q ss_pred hhchHHHHHHHHHHHhhcccc-CCchHHHHHH
Q 027525 163 KRQSEISEEILTATRKHVSSI-WGSPRLEVIA 193 (222)
Q Consensus 163 ge~le~L~~kt~~L~~~s~~F-~~a~kl~r~~ 193 (222)
.++++.|+..++.+......- .+=.+++-..
T Consensus 19 ~~~i~~lE~~~~~~e~~i~~~~~~l~~I~~n~ 50 (71)
T PF10779_consen 19 EERIDKLEKRDAANEKDIKNLNKQLEKIKSNT 50 (71)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445555555555555554444 4444444433
No 74
>COG5346 Predicted membrane protein [Function unknown]
Probab=35.70 E-value=1.9e+02 Score=21.76 Aligned_cols=28 Identities=11% Similarity=0.099 Sum_probs=14.6
Q ss_pred HhccC--chhhhhHHHHHhhhccchhHHHH
Q 027525 127 KQYVD--TRTQANLSKLNANRGQDLDIVIE 154 (222)
Q Consensus 127 ~~yn~--~~~~dkl~~i~~~v~~vk~im~~ 154 (222)
.+||+ |.+.+.|-.+-++=.+.+..|..
T Consensus 45 ~qYnsI~pnt~~rimaMAekEQahrH~~~~ 74 (136)
T COG5346 45 SQYNSIYPNTLQRIMAMAEKEQAHRHAIDL 74 (136)
T ss_pred HHHHhhcCCHHHHHHHHHHHHHHHHHHHHH
Confidence 45554 44445555555555555555543
No 75
>KOG1666 consensus V-SNARE [Intracellular trafficking, secretion, and vesicular transport]
Probab=35.51 E-value=2.6e+02 Score=23.16 Aligned_cols=78 Identities=15% Similarity=0.070 Sum_probs=43.5
Q ss_pred hHHHHHhhhccchhHHHHhHHHHHHchhch----HHHHHHHHHHHhhcccc-CCchH-HHHHHHhhhHHHHHHHHHHHHH
Q 027525 137 NLSKLNANRGQDLDIVIEHMYQIVERKRQS----EISEEILTATRKHVSSI-WGSPR-LEVIALKWTPIAIIVAVAAILL 210 (222)
Q Consensus 137 kl~~i~~~v~~vk~im~~Ni~~il~Rge~l----e~L~~kt~~L~~~s~~F-~~a~k-l~r~~wK~~~i~~~~~~~~~~i 210 (222)
.+..-+.-..||.+|=.+=++.+=.-.|.| +-|.+-.++|..+.+.. .-+++ .+++..=+.+|+++++++++++
T Consensus 136 rl~ds~Ria~ETEqIG~~IL~dL~~QRe~L~rar~rL~~td~~lgkS~kiL~tM~RR~~~nk~~~~aii~~l~~~il~il 215 (220)
T KOG1666|consen 136 RLKDSQRIALETEQIGSEILEDLHGQREQLERARERLRETDANLGKSRKILTTMTRRLIRNKFTLTAIIALLVLAILLIL 215 (220)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333333444443333333333333333 34666667777776666 55544 3446644788888877777788
Q ss_pred HHHH
Q 027525 211 WANL 214 (222)
Q Consensus 211 ~~~~ 214 (222)
|.+|
T Consensus 216 Y~kf 219 (220)
T KOG1666|consen 216 YSKF 219 (220)
T ss_pred HHhc
Confidence 8776
No 76
>PF08923 MAPKK1_Int: Mitogen-activated protein kinase kinase 1 interacting; InterPro: IPR015019 Protein phosphorylation, which plays a key role in most cellular activities, is a reversible process mediated by protein kinases and phosphoprotein phosphatases. Protein kinases catalyse the transfer of the gamma phosphate from nucleotide triphosphates (often ATP) to one or more amino acid residues in a protein substrate side chain, resulting in a conformational change affecting protein function. Phosphoprotein phosphatases catalyse the reverse process. Protein kinases fall into three broad classes, characterised with respect to substrate specificity []: Serine/threonine-protein kinases Tyrosine-protein kinases Dual specific protein kinases (e.g. MEK - phosphorylates both Thr and Tyr on target proteins) Protein kinase function has been evolutionarily conserved from Escherichia coli to human []. Protein kinases play a role in a multitude of cellular processes, including division, proliferation, apoptosis, and differentiation []. Phosphorylation usually results in a functional change of the target protein by changing enzyme activity, cellular location, or association with other proteins. The catalytic subunits of protein kinases are highly conserved, and several structures have been solved [], leading to large screens to develop kinase-specific inhibitors for the treatments of a number of diseases []. This entry represents Mitogen-activated protein kinase kinase 1 interacting protein, which is a small subcellular adaptor protein required for MAPK signalling and ERK1/2 activation. The overall topology of this domain has a central five-stranded beta-sheet sandwiched between a two alpha-helix and a one alpha-helix layer []. ; PDB: 1VEU_A 1VET_A 1SKO_A 2ZL1_A 3CPT_A.
Probab=35.37 E-value=1.8e+02 Score=21.49 Aligned_cols=91 Identities=14% Similarity=0.044 Sum_probs=49.1
Q ss_pred EEEEEecCCeeeeeeccCCC-C--CCCChhHHHHHHHHHHHHcCCCCCCCCceEEEEcCeEEEEEeeCCcEEEEEEeCCC
Q 027525 5 TIVGRVSDGLPLARGPRYLN-Q--EHDSFSFYKQQAEFILKEISRGALAPSKMTIRVDHHSFHYLMENGIGCFITLCDSS 81 (222)
Q Consensus 5 ~~IaR~~d~~iLae~~~~~~-~--~~~~~~~~~~~a~~il~~i~~~~~~~~k~s~~~~~~~~h~l~~~~~~~~~cvtd~~ 81 (222)
+.+.=.+||.||+....++. + ..+.|...=..+.+-+.|+.-+. +...+..+++|......... +.+..+|+++
T Consensus 19 ~I~itDrDGvpi~~v~~~~~~~~~~~~~~~~tf~~a~~Q~~KL~lG~--nk~ii~~Y~~~qvv~~~~~p-l~it~ias~~ 95 (119)
T PF08923_consen 19 AIVITDRDGVPIAKVSSDSAPESAMRPSLLSTFAMAIDQASKLGLGK--NKSIIAYYDSYQVVQFNKLP-LYITFIASSN 95 (119)
T ss_dssp EEEEEETTS-EEEEEE-TTS-GGGGSHHHHCCHHHHHHHHTTSSS-S--EEEEEEEESSEEEEEEEETT-EEEEEEEETT
T ss_pred EEEEECCCCcEEEEecCCCCcchhhhhHHHHHHHHHhhcccccCCCC--ceEEEEEeCCEEEEEEeCCC-eEEEEEecCC
Confidence 33333469999999775421 1 11112100013444456766552 34445567888754444566 8888899998
Q ss_pred CChHHHHHHHHHHHHHH
Q 027525 82 YPRKLAFHYLQDLQKEF 98 (222)
Q Consensus 82 ~p~~~af~fL~ei~~~F 98 (222)
...-.-..+-+++..-+
T Consensus 96 aN~G~il~l~~~L~~~l 112 (119)
T PF08923_consen 96 ANTGLILSLEEELAPIL 112 (119)
T ss_dssp S-HHHHHHHHHHHHHHH
T ss_pred CCHHHHHHhHHHHHHHH
Confidence 88777666666665433
No 77
>COG1459 PulF Type II secretory pathway, component PulF [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=34.98 E-value=1.6e+02 Score=26.71 Aligned_cols=88 Identities=14% Similarity=0.081 Sum_probs=42.8
Q ss_pred chHHHHHHHHhccCchhhhhHHHHHhhhccchhHHHHhHHHHHHchhchHHHHHHHHHHHhhccccCCchHHHHHHH---
Q 027525 118 FESIIGNIRKQYVDTRTQANLSKLNANRGQDLDIVIEHMYQIVERKRQSEISEEILTATRKHVSSIWGSPRLEVIAL--- 194 (222)
Q Consensus 118 f~~~l~~~~~~yn~~~~~dkl~~i~~~v~~vk~im~~Ni~~il~Rge~le~L~~kt~~L~~~s~~F~~a~kl~r~~w--- 194 (222)
+...+.+++..-.. ...+++.-++...+=+-..-++=.+=||+.+|+..-++..+.. .+..++|++.-
T Consensus 93 ~~~~l~~i~~~l~~---G~sls~al~~~~~~F~~~~~~~v~~gE~~G~L~~~l~~la~y~------e~~~~lr~Ki~~Al 163 (397)
T COG1459 93 LKQVLTSILEELES---GKSLSEALAQLPGVFPDLYVAMVAAGERSGNLDEVLQRLAKYL------EKQAALRKKIKSAL 163 (397)
T ss_pred HHHHHHHHHHHHHC---CCcHHHHHHhCcccCCHHHHHHHHHHHhcCCHHHHHHHHHHHH------HHHHHHHHHHHHHH
Confidence 44445555443322 2345555555554444444445555666666666655544322 33445555554
Q ss_pred hhhHHHHHHHHHHHHHHHHH
Q 027525 195 KWTPIAIIVAVAAILLWANL 214 (222)
Q Consensus 195 K~~~i~~~~~~~~~~i~~~~ 214 (222)
.|..+++++.++++++++.|
T Consensus 164 ~YP~vll~v~~~v~~~Ll~~ 183 (397)
T COG1459 164 IYPLVLLVVALVVVLFLLIF 183 (397)
T ss_pred HhhHHHHHHHHHHHHHHHHH
Confidence 45555554444444444444
No 78
>TIGR03745 conj_TIGR03745 integrating conjugative element membrane protein, PFL_4702 family. Members of this protein family are found occasionally on plasmids such as the Pseudomonas putida TOL plasmid pWWO_p085. Usually, however, they are found on the bacterial main chromosome in a region flanked by markers of conjugative transfer and/or transposition.
Probab=32.32 E-value=33 Score=24.92 Aligned_cols=24 Identities=8% Similarity=0.329 Sum_probs=16.5
Q ss_pred HHHH-hhhHHHHHHHHHHH-HHHHHH
Q 027525 191 VIAL-KWTPIAIIVAVAAI-LLWANL 214 (222)
Q Consensus 191 r~~w-K~~~i~~~~~~~~~-~i~~~~ 214 (222)
|+-| ++..++++++++++ +||+.-
T Consensus 73 k~~W~~fg~~v~VGviLLv~vIwLlt 98 (104)
T TIGR03745 73 KATWGDFGATVVVGAILLVVIIWLLT 98 (104)
T ss_pred hhhHHhCcchhhhHhHHHHHHHHHHH
Confidence 4568 88888888666555 678753
No 79
>PF15188 CCDC-167: Coiled-coil domain-containing protein 167
Probab=32.16 E-value=85 Score=21.96 Aligned_cols=46 Identities=11% Similarity=0.066 Sum_probs=27.1
Q ss_pred hHHHHHHHHHHHhhcccc-CCchHHHHHHHhhhHHHHHHHHHHHHHH
Q 027525 166 SEISEEILTATRKHVSSI-WGSPRLEVIALKWTPIAIIVAVAAILLW 211 (222)
Q Consensus 166 le~L~~kt~~L~~~s~~F-~~a~kl~r~~wK~~~i~~~~~~~~~~i~ 211 (222)
-..|++--..|....... +.=+.|++.=+|...+.+.+.++++++|
T Consensus 38 R~~lE~E~~~l~~~l~~~E~eL~~LrkENrK~~~ls~~l~~v~~LvY 84 (85)
T PF15188_consen 38 RRSLEKELNELKEKLENNEKELKLLRKENRKSMLLSVALFFVCFLVY 84 (85)
T ss_pred HHHHHHHHHHHHHHhhccHHHHHHHHHhhhhhHHHHHHHHHHHHHHc
Confidence 344555555666666666 6666676665667666665444444444
No 80
>PF06837 Fijivirus_P9-2: Fijivirus P9-2 protein; InterPro: IPR009650 This family consists of several Fijivirus specific P9-2 proteins from Rice black streaked dwarf virus (RBSDV) and Fiji disease virus. The function of this family is unknown.
Probab=31.99 E-value=1.1e+02 Score=24.83 Aligned_cols=38 Identities=11% Similarity=0.083 Sum_probs=27.8
Q ss_pred HhhhccchhHHHH--hHHHHHHchhchHHHHHHHHHHHhh
Q 027525 142 NANRGQDLDIVIE--HMYQIVERKRQSEISEEILTATRKH 179 (222)
Q Consensus 142 ~~~v~~vk~im~~--Ni~~il~Rge~le~L~~kt~~L~~~ 179 (222)
|-+++.++++|++ |-+.++||--.=.+|.++-++|...
T Consensus 22 Kiq~~~~k~~m~d~snf~~ife~~~sdse~Dd~vd~lE~~ 61 (214)
T PF06837_consen 22 KIQIESIKPIMQDFSNFDEIFERPLSDSELDDKVDKLETD 61 (214)
T ss_pred HHHHHhhhHHHHhccchHHHHcccCcchhHHHHHHHHhhh
Confidence 3456667788875 8888998877777777777777654
No 81
>PHA02844 putative transmembrane protein; Provisional
Probab=30.50 E-value=67 Score=21.81 Aligned_cols=8 Identities=25% Similarity=0.061 Sum_probs=3.4
Q ss_pred HhhhHHHH
Q 027525 194 LKWTPIAI 201 (222)
Q Consensus 194 wK~~~i~~ 201 (222)
|.++++++
T Consensus 48 ~~~~ii~i 55 (75)
T PHA02844 48 TKIWILTI 55 (75)
T ss_pred HHHHHHHH
Confidence 43444444
No 82
>KOG3230 consensus Vacuolar assembly/sorting protein DID4 [Intracellular trafficking, secretion, and vesicular transport]
Probab=30.27 E-value=80 Score=25.73 Aligned_cols=26 Identities=4% Similarity=0.056 Sum_probs=19.0
Q ss_pred HhhhccchhHHHHhHHHHHHchhchH
Q 027525 142 NANRGQDLDIVIEHMYQIVERKRQSE 167 (222)
Q Consensus 142 ~~~v~~vk~im~~Ni~~il~Rge~le 167 (222)
.+.++.+.+.|-++||..|+..|.=|
T Consensus 132 se~Mdm~~Emm~daIDdal~~~edEE 157 (224)
T KOG3230|consen 132 SEIMDMKEEMMDDAIDDALGDDEDEE 157 (224)
T ss_pred HHHHHHHHHHHHHHHHHhhcccchhH
Confidence 34566778899999999997544433
No 83
>PF11190 DUF2976: Protein of unknown function (DUF2976); InterPro: IPR021356 Members of this protein family are found occasionally on plasmids such as the Pseudomonas putida TOL plasmid pWWO_p085. Usually, however, they are found on the bacterial main chromosome in a region flanked by markers of conjugative transfer and/or transposition.
Probab=30.27 E-value=40 Score=23.70 Aligned_cols=24 Identities=8% Similarity=0.277 Sum_probs=15.8
Q ss_pred HHHHH-hhhHHHHHHHHHHH-HHHHH
Q 027525 190 EVIAL-KWTPIAIIVAVAAI-LLWAN 213 (222)
Q Consensus 190 ~r~~w-K~~~i~~~~~~~~~-~i~~~ 213 (222)
.|+-| +.....++++++++ ++|+.
T Consensus 56 gK~~W~~fg~~~vVGvvLlv~viwLl 81 (87)
T PF11190_consen 56 GKKTWGDFGATVVVGVVLLVFVIWLL 81 (87)
T ss_pred CcccHHHhhhHHHHHHHHHHHHHHHH
Confidence 35668 77777777655554 67764
No 84
>PF12277 DUF3618: Protein of unknown function (DUF3618); InterPro: IPR022062 This domain family is found in bacteria, and is approximately 50 amino acids in length.
Probab=29.99 E-value=1.4e+02 Score=18.33 Aligned_cols=41 Identities=10% Similarity=0.157 Sum_probs=30.3
Q ss_pred HHHHHhhhccchhHHHHhHHHHHHchhchHHHHHHHHHHHh
Q 027525 138 LSKLNANRGQDLDIVIEHMYQIVERKRQSEISEEILTATRK 178 (222)
Q Consensus 138 l~~i~~~v~~vk~im~~Ni~~il~Rge~le~L~~kt~~L~~ 178 (222)
...|+.+|+.++.-|.++++.+-.|-.-=....+..+....
T Consensus 5 ~~~ie~dIe~tR~~La~tvd~L~~r~~P~~~a~~~~~~~r~ 45 (49)
T PF12277_consen 5 PDEIERDIERTRAELAETVDELAARLSPKRLADEAKERVRA 45 (49)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHH
Confidence 56799999999999999999988876654444444444433
No 85
>PHA01811 hypothetical protein
Probab=29.39 E-value=65 Score=21.18 Aligned_cols=20 Identities=30% Similarity=0.499 Sum_probs=16.5
Q ss_pred CCceEEEEcCeEEEEEeeCC
Q 027525 51 PSKMTIRVDHHSFHYLMENG 70 (222)
Q Consensus 51 ~~k~s~~~~~~~~h~l~~~~ 70 (222)
++-.+....||.+||+-+++
T Consensus 4 ddivtlrvkgyi~hyldd~n 23 (78)
T PHA01811 4 DDIVTLRVKGYILHYLDDDN 23 (78)
T ss_pred ccEEEEEEeeEEEEEEcCch
Confidence 56778889999999997655
No 86
>PF04628 Sedlin_N: Sedlin, N-terminal conserved region; InterPro: IPR006722 Sedlin is a 140 amino-acid protein with a putative role in endoplasmic reticulum-to-Golgi transport. Several missense mutations and deletion mutations in the SEDL gene, which result in protein truncation by frame shift, are responsible for spondyloepiphyseal dysplasia tarda, a progressive skeletal disorder (OMIM:313400). [].; GO: 0006888 ER to Golgi vesicle-mediated transport, 0005622 intracellular; PDB: 3PR6_A 2J3W_A 1H3Q_A.
Probab=29.22 E-value=2.4e+02 Score=20.95 Aligned_cols=91 Identities=14% Similarity=0.206 Sum_probs=47.7
Q ss_pred EEEEecCCeeeeeeccCCCCCCCC--------hhHHHHHHHHHHHHcCCC-C-CCCCceEEEEcCeEEE-EEeeCCcEEE
Q 027525 6 IVGRVSDGLPLARGPRYLNQEHDS--------FSFYKQQAEFILKEISRG-A-LAPSKMTIRVDHHSFH-YLMENGIGCF 74 (222)
Q Consensus 6 ~IaR~~d~~iLae~~~~~~~~~~~--------~~~~~~~a~~il~~i~~~-~-~~~~k~s~~~~~~~~h-~l~~~~~~~~ 74 (222)
.|++ +..||-+.+-.. .+.. +.-+--.+..+++..-.. . .+-=+.....++|..| |+...+ +=|
T Consensus 1 IIg~--~n~PLy~~~~~~--~~~~~~~~~~~l~~~~~h~sLD~iee~~~~~~~~~yLg~l~~~~~~~vygyvT~t~-~Kf 75 (132)
T PF04628_consen 1 IIGP--NNNPLYIRSFPS--EKESSSSDARHLYQFIAHSSLDVIEEKLWKSSSDMYLGLLDPFEDYKVYGYVTNTG-IKF 75 (132)
T ss_dssp EE-T--TS-EEEEEEE----ST-CGHHHHHHHHHHHHHHHHHHHHHCCHCSSSCSEEEEEEEETTEEEEEEETTT---EE
T ss_pred CCCC--CCcceEEEecCC--CcccccchHHHHHHHHHHHHHHHHHHHHhhcccccccCceehhhhHHHHhhhccCc-eeE
Confidence 3667 788887766531 1211 221112344555532221 1 0112456677887654 877777 888
Q ss_pred EEEeC---CCCChHHHHHHHHHHHHHH-hcc
Q 027525 75 ITLCD---SSYPRKLAFHYLQDLQKEF-QKF 101 (222)
Q Consensus 75 ~cvtd---~~~p~~~af~fL~ei~~~F-~~~ 101 (222)
+.+++ ........-.|++++++.| +..
T Consensus 76 vl~~~~~~~~~~d~~ik~fF~~vh~~Y~~~~ 106 (132)
T PF04628_consen 76 VLVHDMSDNSIRDEDIKQFFKEVHELYVKAL 106 (132)
T ss_dssp EEEECGGG-S--HHHHHHHHHHHHHHHHHHH
T ss_pred EEEEecccCCcchHHHHHHHHHHHHHHHHHc
Confidence 88887 4566677788899998888 443
No 87
>TIGR01478 STEVOR variant surface antigen, stevor family. This model represents the stevor branch of the rifin/stevor family (pfam02009) of predicted variant surface antigens as found in Plasmodium falciparum. This model is based on a set of stevor sequences kindly provided by Matt Berriman from the Sanger Center. This is a global model and assesses a penalty for incomplete sequence. Additional fragmentary sequences may be found with the fragment model and a cutoff of 8 bits.
Probab=28.39 E-value=24 Score=30.39 Aligned_cols=12 Identities=8% Similarity=0.124 Sum_probs=5.1
Q ss_pred hHHHHHHHHhcc
Q 027525 119 ESIIGNIRKQYV 130 (222)
Q Consensus 119 ~~~l~~~~~~yn 130 (222)
||.++++|+.+|
T Consensus 57 DpEmK~iid~~n 68 (295)
T TIGR01478 57 DPELKEIIDKLN 68 (295)
T ss_pred cHHHHHHHHHHh
Confidence 344444444443
No 88
>KOG2740 consensus Clathrin-associated protein medium chain [Intracellular trafficking, secretion, and vesicular transport]
Probab=28.19 E-value=3e+02 Score=24.75 Aligned_cols=35 Identities=11% Similarity=0.239 Sum_probs=27.3
Q ss_pred eeCCcEEEEEEeCCCCChHHHHHHHHHHHHHH-hcch
Q 027525 67 MENGIGCFITLCDSSYPRKLAFHYLQDLQKEF-QKFD 102 (222)
Q Consensus 67 ~~~~~~~~~cvtd~~~p~~~af~fL~ei~~~F-~~~~ 102 (222)
..++ +.+++++.-+.|.-.++.||.+|-+-| +=|+
T Consensus 61 ~~~~-i~~~~~st~e~pPL~~iefL~rv~dv~~eyFg 96 (418)
T KOG2740|consen 61 YRDL-IFFCAVSTVETPPLMVIEFLHRVVDVLLEYFG 96 (418)
T ss_pred eccC-cEEEEEEeccCCChhHHHHHHHHHHHHHHHhc
Confidence 3566 666677778899999999999999888 4443
No 89
>PRK10573 type IV pilin biogenesis protein; Provisional
Probab=27.86 E-value=4.3e+02 Score=23.44 Aligned_cols=20 Identities=5% Similarity=-0.328 Sum_probs=11.6
Q ss_pred CcEEEEEEEecCCeeeeeec
Q 027525 1 MVKMTIVGRVSDGLPLARGP 20 (222)
Q Consensus 1 mI~y~~IaR~~d~~iLae~~ 20 (222)
|-.|...|+..+|...-..-
T Consensus 4 ~~~~~y~a~~~~G~~~~g~~ 23 (399)
T PRK10573 4 KQLWRWQAINGKGELQDGML 23 (399)
T ss_pred CCeEEEEEECCCCCEEEEEE
Confidence 34566666655777665544
No 90
>PF06825 HSBP1: Heat shock factor binding protein 1; InterPro: IPR009643 Heat shock factor binding protein 1 (HSBP1) appears to be a negative regulator of the heat shock response [].; PDB: 3CI9_A.
Probab=27.52 E-value=55 Score=20.85 Aligned_cols=18 Identities=6% Similarity=0.019 Sum_probs=7.9
Q ss_pred hhchHHHHHHHHHHHhhc
Q 027525 163 KRQSEISEEILTATRKHV 180 (222)
Q Consensus 163 ge~le~L~~kt~~L~~~s 180 (222)
|.|||+|+..-.+|..+|
T Consensus 34 ~~RIDdLE~si~dl~~qa 51 (54)
T PF06825_consen 34 SSRIDDLEKSIADLMTQA 51 (54)
T ss_dssp HHHHHCCHHHH-------
T ss_pred HhhHHHHHHHHHHHHHhc
Confidence 667777777766666554
No 91
>PF13228 DUF4037: Domain of unknown function (DUF4037)
Probab=27.36 E-value=1.9e+02 Score=20.61 Aligned_cols=42 Identities=14% Similarity=0.005 Sum_probs=32.0
Q ss_pred hhHHHHHhhhccchhHHHHhHHHHHHchhchHHHHHHHHHHH
Q 027525 136 ANLSKLNANRGQDLDIVIEHMYQIVERKRQSEISEEILTATR 177 (222)
Q Consensus 136 dkl~~i~~~v~~vk~im~~Ni~~il~Rge~le~L~~kt~~L~ 177 (222)
=....+..+...+.+...-|+.+.++||+-+..-.-.++=+.
T Consensus 39 l~~~~ia~~~~~~~qa~~~n~~ra~~R~D~~~~~~~~~~fv~ 80 (100)
T PF13228_consen 39 LRLNKIARNLMLLAQAGQYNLGRALKRGDILAANHAISEFVR 80 (100)
T ss_pred HHHHHHHHHHHHhhhhhHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 356667777777767778899999999999888777766443
No 92
>PHA03054 IMV membrane protein; Provisional
Probab=27.22 E-value=85 Score=21.11 Aligned_cols=8 Identities=25% Similarity=0.489 Sum_probs=3.5
Q ss_pred HhhhHHHH
Q 027525 194 LKWTPIAI 201 (222)
Q Consensus 194 wK~~~i~~ 201 (222)
|++.++++
T Consensus 48 ~~~~ii~l 55 (72)
T PHA03054 48 WYWLIIIF 55 (72)
T ss_pred HHHHHHHH
Confidence 44444444
No 93
>KOG4827 consensus Uncharacterized conserved protein [Function unknown]
Probab=26.90 E-value=36 Score=27.77 Aligned_cols=20 Identities=25% Similarity=0.052 Sum_probs=14.0
Q ss_pred HHHHHH-hhhHHHH-HHHHHHH
Q 027525 189 LEVIAL-KWTPIAI-IVAVAAI 208 (222)
Q Consensus 189 l~r~~w-K~~~i~~-~~~~~~~ 208 (222)
=.|..| |||.+++ +++++++
T Consensus 237 ~eRSF~AKYWMYiiPlglVVl~ 258 (279)
T KOG4827|consen 237 DERSFLAKYWMYIIPLGLVVLF 258 (279)
T ss_pred cchhHHHHHHHhhccchhhhhh
Confidence 347789 9988877 5655555
No 94
>PHA02819 hypothetical protein; Provisional
Probab=26.49 E-value=89 Score=21.00 Aligned_cols=8 Identities=13% Similarity=0.135 Sum_probs=3.5
Q ss_pred HhhhHHHH
Q 027525 194 LKWTPIAI 201 (222)
Q Consensus 194 wK~~~i~~ 201 (222)
|++.++++
T Consensus 46 ~~~~ii~l 53 (71)
T PHA02819 46 RYYLIIGL 53 (71)
T ss_pred HHHHHHHH
Confidence 44444444
No 95
>KOG0972 consensus Huntingtin interacting protein 1 (Hip1) interactor Hippi [Signal transduction mechanisms]
Probab=26.45 E-value=95 Score=27.00 Aligned_cols=37 Identities=19% Similarity=0.389 Sum_probs=22.1
Q ss_pred HHHHHHHHHHHH-hcchhhhhcccCCCcccccchHHHHHHHHhcc
Q 027525 87 AFHYLQDLQKEF-QKFDISLIDKITRPYSCVKFESIIGNIRKQYV 130 (222)
Q Consensus 87 af~fL~ei~~~F-~~~~~~~~~~~~~~~~~~~f~~~l~~~~~~yn 130 (222)
+-.||+.+.++| ..... +.+ |.- ..+..|+.+|.+|.
T Consensus 246 ~~~~Ldklh~eit~~LEk--I~S--REK---~lNnqL~~l~q~fr 283 (384)
T KOG0972|consen 246 VGPYLDKLHKEITKALEK--IAS--REK---SLNNQLASLMQKFR 283 (384)
T ss_pred hhHHHHHHHHHHHHHHHH--HHH--HHH---HHHHHHHHHHHHHH
Confidence 457899999988 65542 322 332 33455666666664
No 96
>PTZ00370 STEVOR; Provisional
Probab=25.69 E-value=29 Score=29.90 Aligned_cols=20 Identities=10% Similarity=0.117 Sum_probs=9.3
Q ss_pred hhHHHHHhhhccchhHHHHh
Q 027525 136 ANLSKLNANRGQDLDIVIEH 155 (222)
Q Consensus 136 dkl~~i~~~v~~vk~im~~N 155 (222)
+...+++.++-++=+-|-.+
T Consensus 102 e~k~klEKel~e~~ee~fg~ 121 (296)
T PTZ00370 102 EPMSTLEKELLETYEEMFGD 121 (296)
T ss_pred chhHHHHHHHHHHHHHHhcC
Confidence 34455555554444444433
No 97
>PF08006 DUF1700: Protein of unknown function (DUF1700); InterPro: IPR012963 This family contains many hypothetical bacterial proteins and two putative membrane proteins (Q6GFD0 from SWISSPROT and Q6G806 from SWISSPROT).
Probab=25.37 E-value=3.1e+02 Score=21.44 Aligned_cols=13 Identities=31% Similarity=0.713 Sum_probs=7.8
Q ss_pred HHHHHHHHHHhcc
Q 027525 89 HYLQDLQKEFQKF 101 (222)
Q Consensus 89 ~fL~ei~~~F~~~ 101 (222)
.||+++++..+..
T Consensus 5 efL~~L~~~L~~l 17 (181)
T PF08006_consen 5 EFLNELEKYLKKL 17 (181)
T ss_pred HHHHHHHHHHHcC
Confidence 5777777665333
No 98
>PF04079 DUF387: Putative transcriptional regulators (Ypuh-like); InterPro: IPR005234 This family represents ScpB, which along with ScpA (IPR003768 from INTERPRO) interacts with SMC in vivo forming a complex that is required for chromosome condensation and segregation [, ]. The SMC-Scp complex appears to be similar to the MukB-MukE-Muk-F complex in Escherichia coli [], where MukB (IPR007406 from INTERPRO) is the homologue of SMC. ScpA and ScpB have little sequence similarity to MukE (IPR007385 from INTERPRO) or MukF (IPR005582 from INTERPRO), they are predicted to be structurally similar, being predominantly alpha-helical with coiled coil regions. In general scpA and scpB form an operon in most bacterial genomes. Flanking genes are highly variable suggesting that the operon has moved throughout evolution. Bacteria containing an smc gene also contain scpA or scpB but not necessarily both. An exception is found in Deinococcus radiodurans, which contains scpB but neither smc nor scpA. In the archaea the gene order SMC-ScpA is conserved in nearly all species, as is the very short distance between the two genes, indicating co-transcription of the both in different archaeal genera and arguing that interaction of the gene products is not confined to the homologues in Bacillus subtilis. It would seem probable that, in light of all the studies, SMC, ScpA and ScpB proteins or homologues act together in chromosome condensation and segregation in all prokaryotes []. ; GO: 0051304 chromosome separation; PDB: 1T6S_B 2Z99_A.
Probab=25.13 E-value=90 Score=24.42 Aligned_cols=81 Identities=15% Similarity=0.144 Sum_probs=38.6
Q ss_pred ChHHHHHHHHHHHHHH-hcchhhhhcccCCCcccc---cchHHHHHHHHhccCc-hhhhhHH----------HHHhhhcc
Q 027525 83 PRKLAFHYLQDLQKEF-QKFDISLIDKITRPYSCV---KFESIIGNIRKQYVDT-RTQANLS----------KLNANRGQ 147 (222)
Q Consensus 83 p~~~af~fL~ei~~~F-~~~~~~~~~~~~~~~~~~---~f~~~l~~~~~~yn~~-~~~dkl~----------~i~~~v~~ 147 (222)
+....-..|+++.++| ..-..=.+...+.-|.+. +|.+.+++....-..+ -+...+. -.+.+|++
T Consensus 25 ~~~~v~~~l~~L~~~y~~~~~gl~l~~~~~~y~l~tk~~~~~~v~~~~~~~~~~~LS~aalEtLAiIAY~QPiTr~eIe~ 104 (159)
T PF04079_consen 25 SEDEVEEALEELQEEYNEEDRGLELVEVGGGYRLQTKPEYAEYVEKLFKKPKPPKLSQAALETLAIIAYKQPITRAEIEE 104 (159)
T ss_dssp -HHHHHHHHHHHHHHHHHCT-SEEEEEETTEEEEEE-GGGHHHHHHHHCTCCCHHHHHHHHHHHHHHHHH-SEEHHHHHH
T ss_pred CHHHHHHHHHHHHHHhccCCCCEEEEEECCEEEEEEhHHHHHHHHHHhccCccCCCCHHHHHHHHHHHhcCCcCHHHHHH
Confidence 4455567788888888 333211122222334442 6777777666541110 0000000 13566777
Q ss_pred chhHHHHh-HHHHHHch
Q 027525 148 DLDIVIEH-MYQIVERK 163 (222)
Q Consensus 148 vk~im~~N-i~~il~Rg 163 (222)
++++=.++ |+++++||
T Consensus 105 IRGv~s~~~i~~L~e~g 121 (159)
T PF04079_consen 105 IRGVNSDSVIKTLLERG 121 (159)
T ss_dssp HHTS--HCHHHHHHHTT
T ss_pred HcCCChHHHHHHHHHCC
Confidence 76665444 66777765
No 99
>PHA03011 hypothetical protein; Provisional
Probab=25.06 E-value=1.2e+02 Score=21.86 Aligned_cols=58 Identities=10% Similarity=0.058 Sum_probs=43.2
Q ss_pred cchHHHHHHHHhccCchhhhhHHHHHhhhccchhHHHHhHHHHHHchhchHHHHHHHHHH
Q 027525 117 KFESIIGNIRKQYVDTRTQANLSKLNANRGQDLDIVIEHMYQIVERKRQSEISEEILTAT 176 (222)
Q Consensus 117 ~f~~~l~~~~~~yn~~~~~dkl~~i~~~v~~vk~im~~Ni~~il~Rge~le~L~~kt~~L 176 (222)
.....+.++..+||.- .|...-+..++.+...+.++|.|.+.-=...+|.|.+.-.++
T Consensus 61 ai~e~ldeL~~qYN~L--~dEYn~i~Ne~k~~~~iIQdn~d~I~~LraeIDkLK~niaN~ 118 (120)
T PHA03011 61 AIIEILDELIAQYNEL--LDEYNLIENEIKDLEIIIQDNDDEIHFLRAEIDKLKENIANL 118 (120)
T ss_pred HHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHHHHhcc
Confidence 4456677777788753 366777888888888899999888888777777777665544
No 100
>PF04906 Tweety: Tweety; InterPro: IPR006990 None of the members of the tweety (tty) family have been functionally characterised. However, they are considered to be transmembrane proteins with five potential membrane-spanning regions. A number of potential functions have been suggested on the basis of homology to the yeast FTR1 and FTH1 iron transporter proteins and the mammalian neurotensin receptors 1 and 2 in that they have a similar hydrophobicity profiles although there is no detectable sequence homology to the tweety-related proteins. It has been proposed that the tweety-related proteins could be involved in transport of iron or other divalent cations or alternatively that they may be membrane-bound receptors [].
Probab=25.01 E-value=4.9e+02 Score=23.54 Aligned_cols=10 Identities=10% Similarity=0.444 Sum_probs=5.8
Q ss_pred hhhHHHHHHH
Q 027525 195 KWTPIAIIVA 204 (222)
Q Consensus 195 K~~~i~~~~~ 204 (222)
||...+++.+
T Consensus 185 Rw~~~~~lL~ 194 (406)
T PF04906_consen 185 RWLAYLGLLI 194 (406)
T ss_pred HHHHHHHHHH
Confidence 7766665433
No 101
>PTZ00032 60S ribosomal protein L18; Provisional
Probab=24.99 E-value=2.4e+02 Score=23.10 Aligned_cols=60 Identities=8% Similarity=-0.017 Sum_probs=36.0
Q ss_pred EEEEEEEecCCeeeeeeccCCCC------------------CCCChhHHHHHHHHHHHHcCCCCCCCCceEEEEcCeEEE
Q 027525 3 KMTIVGRVSDGLPLARGPRYLNQ------------------EHDSFSFYKQQAEFILKEISRGALAPSKMTIRVDHHSFH 64 (222)
Q Consensus 3 ~y~~IaR~~d~~iLae~~~~~~~------------------~~~~~~~~~~~a~~il~~i~~~~~~~~k~s~~~~~~~~h 64 (222)
+|+.|.=...+.+||..++...+ .+++-+.-+.+.+.+.++..... =.+.+|..++|.||
T Consensus 117 IYAQIIDD~~~~TLasaSTlek~l~~~~~~~~~~~~n~~~~~g~nieaA~~VGk~IAerAl~kG--I~kVvFDRgGy~YH 194 (211)
T PTZ00032 117 MYATIVDDYTRHVLCFSCTNFKYLSHIFGTYPTKTTNRVRNNGGTIKAAYELGKLIGRKALSKG--ISKVRFDRAHYKYA 194 (211)
T ss_pred EEEEEEECCCCCEEEEecCCCHHHHhhhcccccccccccccCCCcHHHHHHHHHHHHHHHHHCC--CCEEEEeCCCCeeh
Confidence 57777775566778776653111 13344444455566666544431 46778888899998
No 102
>PF05659 RPW8: Arabidopsis broad-spectrum mildew resistance protein RPW8; InterPro: IPR008808 This entry represents the RPW8 domain found in several broad-spectrum mildew resistance proteins from Arabidopsis thaliana and other dicots. Plant disease resistance (R) genes control the recognition of specific pathogens and activate subsequent defence responses. The R protein-mediated defences typically involve a rapid, localized necrosis, or hypersensitive response (HR), at the site of infection, and the localised formation of antimicrobial chemicals and proteins that restrict growth of the pathogen. The A. thaliana locus Resistance to Powdery Mildew 8 (RPW8) contains two naturally polymorphic, dominant R genes: RPW8.1 and RPW8.2, which individually control resistance to a broad range of powdery mildew pathogens. They induce localised, salicylic acid-dependent defences similar to those induced by R genes that control specific resistance. Apparently, broad-spectrum resistance mediated by RPW8 uses the same mechanisms as specific resistance [, ]. RPW8.1 and RPW8.2 share similarity with an ~150 amino acid module forming the N terminus of a group of disease resistance proteins, which have a nucleotide-binding site (NBS) and leucine-rich repeats (LRRs) [, ]. The RPW8 domain sequences contain a predicted N-terminal transmembrane (TM) region or possibly a signal peptide, and a coiled-coil (CC) motif [].
Probab=24.95 E-value=1.1e+02 Score=23.56 Aligned_cols=50 Identities=18% Similarity=0.306 Sum_probs=28.3
Q ss_pred cchHHHHHHHHhccC-chhhhhHHHHHhhhccchhHHHHhHHHHHHchhch
Q 027525 117 KFESIIGNIRKQYVD-TRTQANLSKLNANRGQDLDIVIEHMYQIVERKRQS 166 (222)
Q Consensus 117 ~f~~~l~~~~~~yn~-~~~~dkl~~i~~~v~~vk~im~~Ni~~il~Rge~l 166 (222)
.|.+.++++...-+. .+..+.|.+++.+++.-+.-..+-+...|++|+.|
T Consensus 31 ~fk~~l~~L~sTl~~i~P~i~eI~~~~~eld~~~~ee~e~L~~~L~~g~~L 81 (147)
T PF05659_consen 31 SFKSILKRLESTLESIIPIIKEIDKLNVELDRPRQEEIERLKELLEKGKEL 81 (147)
T ss_pred hhhhHHHHHHHHHHHhhhHHHHHHHHhhhcCCchhHHHHHHHHHHHHHHHH
Confidence 445555555443332 12346677777777777555555666666666543
No 103
>COG4064 MtrG Tetrahydromethanopterin S-methyltransferase, subunit G [Coenzyme metabolism]
Probab=24.92 E-value=2e+02 Score=19.35 Aligned_cols=16 Identities=13% Similarity=0.098 Sum_probs=10.3
Q ss_pred hhchHHHHHHHHHHHh
Q 027525 163 KRQSEISEEILTATRK 178 (222)
Q Consensus 163 ge~le~L~~kt~~L~~ 178 (222)
.+|||++++|-|....
T Consensus 21 ~kRLdeieekvef~~~ 36 (75)
T COG4064 21 HKRLDEIEEKVEFVNG 36 (75)
T ss_pred HHHHHHHHHHHHhhHH
Confidence 4567777777775443
No 104
>PF07439 DUF1515: Protein of unknown function (DUF1515); InterPro: IPR010889 This family consists of several hypothetical bacterial proteins of around 130 residues in length. Members of this family seem to be found exclusively in Rhizobium species. The function of this family is unknown.
Probab=24.31 E-value=2.9e+02 Score=20.26 Aligned_cols=16 Identities=19% Similarity=0.264 Sum_probs=7.3
Q ss_pred cchhHHHHhHHHHHHc
Q 027525 147 QDLDIVIEHMYQIVER 162 (222)
Q Consensus 147 ~vk~im~~Ni~~il~R 162 (222)
.-+..|+.-+|.+.+|
T Consensus 33 ~SRa~mhrRlDElV~R 48 (112)
T PF07439_consen 33 ASRASMHRRLDELVER 48 (112)
T ss_pred hhhHHHHHhHHHHHHH
Confidence 3344554444444443
No 105
>PF01788 PsbJ: PsbJ; InterPro: IPR002682 Oxygenic photosynthesis uses two multi-subunit photosystems (I and II) located in the cell membranes of cyanobacteria and in the thylakoid membranes of chloroplasts in plants and algae. Photosystem II (PSII) has a P680 reaction centre containing chlorophyll 'a' that uses light energy to carry out the oxidation (splitting) of water molecules, and to produce ATP via a proton pump. Photosystem I (PSI) has a P700 reaction centre containing chlorophyll that takes the electron and associated hydrogen donated from PSII to reduce NADP+ to NADPH. Both ATP and NADPH are subsequently used in the light-independent reactions to convert carbon dioxide to glucose using the hydrogen atom extracted from water by PSII, releasing oxygen as a by-product. PSII is a multisubunit protein-pigment complex containing polypeptides both intrinsic and extrinsic to the photosynthetic membrane [, ]. Within the core of the complex, the chlorophyll and beta-carotene pigments are mainly bound to the antenna proteins CP43 (PsbC) and CP47 (PsbB), which pass the excitation energy on to the reaction centre proteins D1 (Qb, PsbA) and D2 (Qa, PsbD) that bind all the redox-active cofactors involved in the energy conversion process. The PSII oxygen-evolving complex (OEC) oxidises water to provide protons for use by PSI, and consists of OEE1 (PsbO), OEE2 (PsbP) and OEE3 (PsbQ). The remaining subunits in PSII are of low molecular weight (less than 10 kDa), and are involved in PSII assembly, stabilisation, dimerisation, and photo-protection []. This family represents the low molecular weight transmembrane protein PsbJ found in PSII. PsbJ is one of the most hydrophobic proteins in the thylakoid membrane, and is located in a gene cluster with PsbE, PsbF and PsbL (PsbEFJL). Both PsbJ and PsbL (IPR003372 from INTERPRO) are essential for proper assembly of the OEC. Mutations in PsbJ cause the light-harvesting antenna to remain detached from the PSII dimers []. In addition, both PsbJ and PsbL are involved in the unidirectional flow of electrons, where PsbJ regulates the forward electron flow from D2 (Qa) to the plastoquinone pool, and PsbL prevents the reduction of PSII by back electron flow from plastoquinol protecting PSII from photo-inactivation [].; GO: 0015979 photosynthesis, 0009523 photosystem II, 0009539 photosystem II reaction center, 0016020 membrane; PDB: 3A0H_J 3ARC_J 3A0B_J 3KZI_J 2AXT_J 3PRQ_J 4FBY_b 3BZ2_J 1S5L_j 3PRR_J ....
Probab=24.29 E-value=1.2e+02 Score=17.92 Aligned_cols=22 Identities=14% Similarity=0.083 Sum_probs=12.5
Q ss_pred hhHHHHHHHHHHHHHHHHHhcC
Q 027525 196 WTPIAIIVAVAAILLWANLVLT 217 (222)
Q Consensus 196 ~~~i~~~~~~~~~~i~~~~~~~ 217 (222)
.|.+..++.+..+.+...||.|
T Consensus 10 LWlVgtv~G~~vi~lvglFfYG 31 (40)
T PF01788_consen 10 LWLVGTVAGIAVIGLVGLFFYG 31 (40)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHC
T ss_pred chHHHHHHHHHHHHHHHHheec
Confidence 3455555555555566666665
No 106
>PTZ00478 Sec superfamily; Provisional
Probab=24.22 E-value=84 Score=21.78 Aligned_cols=43 Identities=0% Similarity=-0.047 Sum_probs=21.7
Q ss_pred HHchhchHHHHHHHHHHHhhcccc-CCchHHHHHHH-hhhHHHHH
Q 027525 160 VERKRQSEISEEILTATRKHVSSI-WGSPRLEVIAL-KWTPIAII 202 (222)
Q Consensus 160 l~Rge~le~L~~kt~~L~~~s~~F-~~a~kl~r~~w-K~~~i~~~ 202 (222)
.+..+.++.+.+...+.-.++..| +..+|=.|+-. |.....++
T Consensus 10 ~~~m~~~~~v~~~~~eF~kds~r~vkrctKPdrkEf~kiakat~i 54 (81)
T PTZ00478 10 TDKSNPVGYVVSGVQEFANDSRRLIRKCTKPDAKEYTNIAYACSV 54 (81)
T ss_pred hcccchhHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHH
Confidence 334444555666665555555555 55555444433 44444443
No 107
>smart00397 t_SNARE Helical region found in SNAREs. All alpha-helical motifs that form twisted and parallel four-helix bundles in target soluble N-ethylmaleimide-sensitive factor (NSF) attachment protein (SNAP) receptor proteins. This motif found in "Q-SNAREs".
Probab=23.79 E-value=1.9e+02 Score=17.84 Aligned_cols=44 Identities=16% Similarity=0.203 Sum_probs=31.9
Q ss_pred hhHHHHHhhhccchhHHHHhHHHHHHchhchHHHHHHHHHHHhh
Q 027525 136 ANLSKLNANRGQDLDIVIEHMYQIVERKRQSEISEEILTATRKH 179 (222)
Q Consensus 136 dkl~~i~~~v~~vk~im~~Ni~~il~Rge~le~L~~kt~~L~~~ 179 (222)
+.+..+...+.+++++..+=-..+-+-++.|+.+.+..+.....
T Consensus 12 ~~l~~l~~~i~~l~~l~~~i~~~v~~Q~~~ld~i~~~~d~~~~~ 55 (66)
T smart00397 12 EELEQLEKSIGELKQIFLDMGTELEEQGEQLDRIEDNVDDADVN 55 (66)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHH
Confidence 57888888888888887765556666778888887776655443
No 108
>KOG0809 consensus SNARE protein TLG2/Syntaxin 16 [Intracellular trafficking, secretion, and vesicular transport]
Probab=23.75 E-value=1.1e+02 Score=26.48 Aligned_cols=39 Identities=8% Similarity=-0.012 Sum_probs=31.4
Q ss_pred hhHHHHHhhhccchhHHHHhHHHHHHchhchHHHHHHHH
Q 027525 136 ANLSKLNANRGQDLDIVIEHMYQIVERKRQSEISEEILT 174 (222)
Q Consensus 136 dkl~~i~~~v~~vk~im~~Ni~~il~Rge~le~L~~kt~ 174 (222)
..+.++-+-|.|+..||.+==..+.+-|--+|-+.-.-|
T Consensus 218 ~EV~ql~~sI~dL~~if~DL~~lVvdQGtvvDRIDyNvE 256 (305)
T KOG0809|consen 218 KEVTQLVESIYDLNQIFKDLSALVVDQGTVVDRIDYNVE 256 (305)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhccchhheecchh
Confidence 468899999999999999988899999987776654433
No 109
>PF15202 Adipogenin: Adipogenin
Probab=23.66 E-value=1.1e+02 Score=20.45 Aligned_cols=10 Identities=10% Similarity=0.700 Sum_probs=7.5
Q ss_pred HHHHHHHHHh
Q 027525 206 AAILLWANLV 215 (222)
Q Consensus 206 ~~~~i~~~~~ 215 (222)
++.|+|++|.
T Consensus 30 fl~ivwlrfl 39 (81)
T PF15202_consen 30 FLLIVWLRFL 39 (81)
T ss_pred HHHHHHHHHH
Confidence 4458999993
No 110
>PF15469 Sec5: Exocyst complex component Sec5
Probab=23.60 E-value=3.2e+02 Score=21.32 Aligned_cols=59 Identities=10% Similarity=0.054 Sum_probs=48.3
Q ss_pred hhHHHHHhhhccchhHHHHhHHHHHHchhchHHHHHHHHHHHhhccccCCchHHHHHHH
Q 027525 136 ANLSKLNANRGQDLDIVIEHMYQIVERKRQSEISEEILTATRKHVSSIWGSPRLEVIAL 194 (222)
Q Consensus 136 dkl~~i~~~v~~vk~im~~Ni~~il~Rge~le~L~~kt~~L~~~s~~F~~a~kl~r~~w 194 (222)
..+.++.+.++++......-...+++|.++.+.+..--+-|.....-|.=..+|++...
T Consensus 40 ~~~~~L~~~l~~~~~~~~~~~~pll~~~~k~~~l~~~l~~l~r~~flF~LP~~L~~~i~ 98 (182)
T PF15469_consen 40 SGTEKLEESLNEASSKANSVFKPLLERREKADKLRNALEFLQRNRFLFNLPSNLRECIK 98 (182)
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHH
Confidence 45888999999999999999999999999999998888888877777755556666554
No 111
>PF06103 DUF948: Bacterial protein of unknown function (DUF948); InterPro: IPR009293 This family consists of bacterial sequences several of which are thought to be general stress proteins.
Probab=23.57 E-value=1.6e+02 Score=20.22 Aligned_cols=15 Identities=7% Similarity=0.000 Sum_probs=6.0
Q ss_pred hchHHHHHHHHHHHh
Q 027525 164 RQSEISEEILTATRK 178 (222)
Q Consensus 164 e~le~L~~kt~~L~~ 178 (222)
++++.+.+..+++..
T Consensus 68 ~~v~~~~~~v~~~g~ 82 (90)
T PF06103_consen 68 EKVDPVFEAVADLGE 82 (90)
T ss_pred HhHHHHHHHHHHHHH
Confidence 334444444444433
No 112
>TIGR01478 STEVOR variant surface antigen, stevor family. This model represents the stevor branch of the rifin/stevor family (pfam02009) of predicted variant surface antigens as found in Plasmodium falciparum. This model is based on a set of stevor sequences kindly provided by Matt Berriman from the Sanger Center. This is a global model and assesses a penalty for incomplete sequence. Additional fragmentary sequences may be found with the fragment model and a cutoff of 8 bits.
Probab=23.54 E-value=71 Score=27.55 Aligned_cols=11 Identities=18% Similarity=0.634 Sum_probs=6.4
Q ss_pred HHHHHHHHHHH
Q 027525 203 VAVAAILLWAN 213 (222)
Q Consensus 203 ~~~~~~~i~~~ 213 (222)
++++++.||++
T Consensus 273 vvliiLYiWly 283 (295)
T TIGR01478 273 VVLIILYIWLY 283 (295)
T ss_pred HHHHHHHHHHH
Confidence 44445567875
No 113
>PF12579 DUF3755: Protein of unknown function (DUF3755); InterPro: IPR022228 This domain family is found in eukaryotes, and is approximately 40 amino acids in length. There is a single completely conserved residue N that may be functionally important.
Probab=23.11 E-value=54 Score=18.89 Aligned_cols=19 Identities=11% Similarity=0.094 Sum_probs=14.9
Q ss_pred hhhHHHHHhhhccchhHHH
Q 027525 135 QANLSKLNANRGQDLDIVI 153 (222)
Q Consensus 135 ~dkl~~i~~~v~~vk~im~ 153 (222)
.|+|..+.+++.++.++|.
T Consensus 16 R~NI~~il~~m~~mpgim~ 34 (35)
T PF12579_consen 16 RDNILAILNDMNDMPGIMS 34 (35)
T ss_pred HHHHHHHHHHHHcchhhhc
Confidence 3678888888888888875
No 114
>PHA03386 P10 fibrous body protein; Provisional
Probab=23.10 E-value=1e+02 Score=21.87 Aligned_cols=15 Identities=7% Similarity=0.056 Sum_probs=11.8
Q ss_pred hhHHHHHhhhccchh
Q 027525 136 ANLSKLNANRGQDLD 150 (222)
Q Consensus 136 dkl~~i~~~v~~vk~ 150 (222)
+|+..+|.+|++++.
T Consensus 19 ~KVdaLQ~qV~dv~~ 33 (94)
T PHA03386 19 TKVDALQTQLNGLEE 33 (94)
T ss_pred hHHHHHHHHHHHHHh
Confidence 688888888888764
No 115
>PRK14750 kdpF potassium-transporting ATPase subunit F; Provisional
Probab=23.01 E-value=1.3e+02 Score=16.54 Aligned_cols=15 Identities=13% Similarity=0.069 Sum_probs=6.1
Q ss_pred HHHHHHHHHHHHHHH
Q 027525 199 IAIIVAVAAILLWAN 213 (222)
Q Consensus 199 i~~~~~~~~~~i~~~ 213 (222)
+.+.+++++++.|+.
T Consensus 6 i~g~llv~lLl~YLv 20 (29)
T PRK14750 6 VCGALLVLLLLGYLV 20 (29)
T ss_pred HHHHHHHHHHHHHHH
Confidence 344434434444443
No 116
>KOG0810 consensus SNARE protein Syntaxin 1 and related proteins [Intracellular trafficking, secretion, and vesicular transport]
Probab=22.49 E-value=73 Score=27.69 Aligned_cols=40 Identities=10% Similarity=-0.039 Sum_probs=21.0
Q ss_pred chhHHHHhHHHHHHchhchHHHHHHHHHHHhhcccc-CCchHHH
Q 027525 148 DLDIVIEHMYQIVERKRQSEISEEILTATRKHVSSI-WGSPRLE 190 (222)
Q Consensus 148 vk~im~~Ni~~il~Rge~le~L~~kt~~L~~~s~~F-~~a~kl~ 190 (222)
-++-|.++|+.=.+++ .+-+++..+=-..|..+ ++|+|-+
T Consensus 231 ~QgEmvd~IE~nV~~A---~~~V~~g~~~~~kAv~~qkkaRK~k 271 (297)
T KOG0810|consen 231 SQGEMVDRIENNVENA---VDYVEQGVDHLKKAVKYQKKARKWK 271 (297)
T ss_pred HHHhHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHhhhce
Confidence 4556666666555444 34445533333445666 6665544
No 117
>cd00193 t_SNARE Soluble NSF (N-ethylmaleimide-sensitive fusion protein)-Attachment protein (SNAP) REceptor domain; these alpha-helical motifs form twisted and parallel heterotetrameric helix bundles; the core complex contains one helix from a protein that is anchored in the vesicle membrane (synaptobrevin), one helix from a protein of the target membrane (syntaxin), and two helices from another protein anchored in the target membrane (SNAP-25); their interaction forms a core which is composed of a polar zero layer, a flanking leucine-zipper layer acts as a water tight shield to isolate ionic interactions in the zero layer from the surrounding solvent
Probab=22.46 E-value=1.9e+02 Score=17.46 Aligned_cols=43 Identities=16% Similarity=0.184 Sum_probs=26.6
Q ss_pred hhHHHHHhhhccchhHHHHhHHHHHHchhchHHHHHHHHHHHh
Q 027525 136 ANLSKLNANRGQDLDIVIEHMYQIVERKRQSEISEEILTATRK 178 (222)
Q Consensus 136 dkl~~i~~~v~~vk~im~~Ni~~il~Rge~le~L~~kt~~L~~ 178 (222)
+.+.++...+.+++.+..+==..+-+-|+.|+.+.+..+....
T Consensus 6 ~~l~~l~~~i~~l~~l~~~i~~~v~~Q~~~ld~i~~~~~~~~~ 48 (60)
T cd00193 6 EELEQLEASIGELKQIFLDLGTEVEEQGELLDRIEDNVDNADV 48 (60)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4577777778887777554444444455667777666554443
No 118
>PRK11546 zraP zinc resistance protein; Provisional
Probab=22.32 E-value=1.5e+02 Score=22.94 Aligned_cols=20 Identities=0% Similarity=-0.007 Sum_probs=15.4
Q ss_pred hhhhhHHHHHhhhccchhHH
Q 027525 133 RTQANLSKLNANRGQDLDIV 152 (222)
Q Consensus 133 ~~~dkl~~i~~~v~~vk~im 152 (222)
+...+|.++.+||.+++.-|
T Consensus 86 pD~~kI~aL~kEI~~Lr~kL 105 (143)
T PRK11546 86 PDSSKINAVAKEMENLRQSL 105 (143)
T ss_pred CCHHHHHHHHHHHHHHHHHH
Confidence 33468999999999988754
No 119
>PTZ00370 STEVOR; Provisional
Probab=22.17 E-value=79 Score=27.33 Aligned_cols=11 Identities=18% Similarity=0.634 Sum_probs=6.2
Q ss_pred HHHHHHHHHHH
Q 027525 203 VAVAAILLWAN 213 (222)
Q Consensus 203 ~~~~~~~i~~~ 213 (222)
++++++.||++
T Consensus 269 vvliilYiwly 279 (296)
T PTZ00370 269 VVLIILYIWLY 279 (296)
T ss_pred HHHHHHHHHHH
Confidence 44444467775
No 120
>PF10883 DUF2681: Protein of unknown function (DUF2681); InterPro: IPR020274 This entry contains membrane proteins with no known function.
Probab=21.54 E-value=1e+02 Score=21.67 Aligned_cols=9 Identities=33% Similarity=0.246 Sum_probs=3.7
Q ss_pred HHHHHHHHH
Q 027525 206 AAILLWANL 214 (222)
Q Consensus 206 ~~~~i~~~~ 214 (222)
++++.|+.|
T Consensus 15 ~~i~~y~~~ 23 (87)
T PF10883_consen 15 ALILAYLWW 23 (87)
T ss_pred HHHHHHHHH
Confidence 333444443
No 121
>PF06103 DUF948: Bacterial protein of unknown function (DUF948); InterPro: IPR009293 This family consists of bacterial sequences several of which are thought to be general stress proteins.
Probab=21.10 E-value=2.3e+02 Score=19.37 Aligned_cols=12 Identities=8% Similarity=0.047 Sum_probs=5.3
Q ss_pred HHHHHhhhccch
Q 027525 138 LSKLNANRGQDL 149 (222)
Q Consensus 138 l~~i~~~v~~vk 149 (222)
+..++++++.+.
T Consensus 35 i~~l~~~~~~i~ 46 (90)
T PF06103_consen 35 IDTLQEQVDPIT 46 (90)
T ss_pred HHHHHHhHHHHH
Confidence 444444444433
No 122
>PF02520 DUF148: Domain of unknown function DUF148; InterPro: IPR003677 This entry represents the domain DUF148, which has no known function.
Probab=20.94 E-value=2.2e+02 Score=20.42 Aligned_cols=43 Identities=12% Similarity=0.204 Sum_probs=33.6
Q ss_pred cchHHHHHHHHhccCchhhhhHHHHHhhhccchhHHHHhHHHHHHc
Q 027525 117 KFESIIGNIRKQYVDTRTQANLSKLNANRGQDLDIVIEHMYQIVER 162 (222)
Q Consensus 117 ~f~~~l~~~~~~yn~~~~~dkl~~i~~~v~~vk~im~~Ni~~il~R 162 (222)
+...-+.+....|+- .+.+.+-..++..-+.-+.+|+..++.+
T Consensus 20 e~~~~l~~Wa~~~~v---~~~~~~f~~~~~~~~~~~~~~~~~vi~~ 62 (113)
T PF02520_consen 20 EIEEQLDEWAEKYGV---QDQYNEFKAQVQAQKEEVRKNVTAVISN 62 (113)
T ss_pred HHHHHHHHHHHHCCc---HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 566677777777762 3778888888888888888888888775
No 123
>PHA02975 hypothetical protein; Provisional
Probab=20.70 E-value=1.2e+02 Score=20.23 Aligned_cols=13 Identities=23% Similarity=-0.074 Sum_probs=5.8
Q ss_pred HHHHHhhhHHHHH
Q 027525 190 EVIALKWTPIAII 202 (222)
Q Consensus 190 ~r~~wK~~~i~~~ 202 (222)
+...|.+.+++++
T Consensus 40 ~~~~~~~~ii~i~ 52 (69)
T PHA02975 40 KSSLSIILIIFII 52 (69)
T ss_pred CCchHHHHHHHHH
Confidence 3344545544443
No 124
>PF09832 DUF2059: Uncharacterized protein conserved in bacteria (DUF2059); InterPro: IPR018637 This entry contains proteins that have no known function. ; PDB: 2X3O_B 3OAO_A.
Probab=20.66 E-value=2.2e+02 Score=18.03 Aligned_cols=24 Identities=8% Similarity=0.043 Sum_probs=16.9
Q ss_pred HHHHHHHHhccCchhhhhHHHHHhh
Q 027525 120 SIIGNIRKQYVDTRTQANLSKLNAN 144 (222)
Q Consensus 120 ~~l~~~~~~yn~~~~~dkl~~i~~~ 144 (222)
..|+.+...|+.|.+ .|+.+.+..
T Consensus 20 ~El~~i~~FY~Sp~G-qk~~~~~~~ 43 (64)
T PF09832_consen 20 EELDAILAFYESPLG-QKIVAKEPA 43 (64)
T ss_dssp HHHHHHHHHHHSHHH-HHHHHHHHH
T ss_pred HHHHHHHHHHCCHHh-HHHHHHhHH
Confidence 568889999998876 555554443
No 125
>PRK05529 cell division protein FtsQ; Provisional
Probab=20.07 E-value=75 Score=26.78 Aligned_cols=10 Identities=0% Similarity=-0.008 Sum_probs=5.0
Q ss_pred HHHHHHHHhc
Q 027525 207 AILLWANLVL 216 (222)
Q Consensus 207 ~~~i~~~~~~ 216 (222)
++++|++|++
T Consensus 49 ~~l~~~~~~S 58 (255)
T PRK05529 49 LLFVMLSAYS 58 (255)
T ss_pred HHHHHHheeC
Confidence 3345555543
Done!