Query 027525
Match_columns 222
No_of_seqs 134 out of 917
Neff 8.1
Searched_HMMs 29240
Date Mon Mar 25 18:59:55 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/027525.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/027525hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2nut_C Vesicle-trafficking pro 100.0 2.1E-52 7.1E-57 339.1 13.9 190 1-194 2-193 (196)
2 4b93_A Vesicle-associated memb 100.0 1.3E-53 4.3E-58 344.0 4.0 181 2-197 4-188 (189)
3 3kyq_A YKT6, synaptobrevin hom 100.0 1.2E-38 4.1E-43 257.9 7.6 181 2-191 4-194 (199)
4 4afi_A AP-3 complex subunit de 100.0 5.3E-31 1.8E-35 208.4 14.1 115 2-131 56-172 (173)
5 2vx8_A Nucleoporin-like protei 99.9 5.1E-27 1.8E-31 185.0 11.6 116 2-132 46-163 (169)
6 3bw6_A Synaptobrevin homolog Y 99.9 1.6E-24 5.4E-29 166.9 15.3 128 1-137 5-144 (144)
7 3hd7_A Vesicle-associated memb 99.9 1.5E-25 5.2E-30 159.1 6.9 76 134-209 3-83 (91)
8 2kog_A Vesicle-associated memb 99.9 2.3E-24 7.8E-29 159.9 -1.8 62 133-194 30-92 (119)
9 2nps_A VAMP-4, vesicle-associa 99.8 1.7E-22 5.7E-27 138.1 2.6 64 131-194 3-67 (74)
10 3b5n_A Synaptobrevin homolog 1 99.8 7E-22 2.4E-26 130.0 3.7 59 136-194 2-61 (61)
11 1n7s_A Vesicle-associated memb 99.8 9E-22 3.1E-26 130.5 3.7 60 135-194 3-63 (63)
12 1l4a_A Synaptobrevin; snare, s 99.8 5.4E-22 1.8E-26 137.5 2.4 65 129-194 9-74 (80)
13 1sfc_A VAMP 2, protein (synapt 99.8 3.9E-21 1.3E-25 137.4 4.3 61 134-194 28-89 (96)
14 1gl2_A Endobrevin; membrane pr 99.8 3.2E-20 1.1E-24 123.6 2.0 61 131-191 4-65 (65)
15 1urq_A M-tomosyn isoform; tran 99.7 1.6E-17 5.6E-22 109.1 2.8 58 136-193 4-62 (63)
16 3fie_C Fragment of vesicle-ass 98.6 4.2E-10 1.4E-14 66.1 -3.9 31 134-164 7-37 (38)
17 3zym_A Phosphatidylinositol-bi 98.3 1.4E-07 4.9E-12 80.7 2.3 32 135-166 279-310 (310)
18 2fh5_A Signal recognition part 97.5 0.00041 1.4E-08 54.6 8.0 90 4-104 14-106 (185)
19 3tjz_C Coatomer subunit zeta-1 96.2 0.13 4.3E-06 39.1 12.7 93 1-101 12-105 (153)
20 2vgl_S AP-2 complex subunit si 96.1 0.23 7.7E-06 37.0 13.2 95 1-102 1-96 (142)
21 1w63_Q Adapter-related protein 96.0 0.11 3.9E-06 39.5 11.3 91 1-98 1-91 (158)
22 3hd7_B Syntaxin-1A; membrane p 95.9 0.031 1.1E-06 40.0 7.2 59 136-194 21-83 (109)
23 2vgl_M AP-2 complex subunit MU 92.3 2.5 8.6E-05 37.1 13.1 89 1-98 1-89 (435)
24 1w63_M Adaptor-related protein 91.8 1.4 4.7E-05 38.7 10.7 94 1-102 2-96 (423)
25 2fz0_A R-snare NYV1P, V-snare 90.1 0.34 1.2E-05 35.7 4.1 61 35-96 49-114 (149)
26 3hd7_A Vesicle-associated memb 89.9 0.86 2.9E-05 31.3 6.0 47 137-183 13-59 (91)
27 2j3t_C Trafficking protein par 89.9 1.4 4.9E-05 32.8 7.7 91 37-130 45-138 (145)
28 2j3t_D Trafficking protein par 84.6 6.5 0.00022 31.4 9.0 93 37-132 118-212 (219)
29 2kog_A Vesicle-associated memb 80.3 0.46 1.6E-05 34.4 0.7 52 142-193 32-84 (119)
30 2j3w_A Sedlin, trafficking pro 78.3 17 0.0006 26.5 9.4 120 3-130 8-140 (142)
31 3cue_A Transport protein parti 75.7 15 0.0005 29.3 8.3 77 52-129 118-218 (219)
32 3cue_C Transport protein parti 69.8 15 0.00051 27.6 6.8 59 37-98 51-111 (159)
33 1t3j_A Mitofusin 1; coiled coi 61.5 11 0.00037 26.1 4.1 46 136-181 36-81 (96)
34 1utg_A Uteroglobin; steroid bi 56.7 19 0.00066 23.1 4.5 44 120-163 19-63 (70)
35 3hd7_B Syntaxin-1A; membrane p 53.0 53 0.0018 22.8 6.7 21 169-190 65-86 (109)
36 1ccd_A Clara cell 17 KD protei 49.5 21 0.00073 23.4 3.9 43 120-162 21-64 (77)
37 2nps_B Syntaxin 13, vesicle-as 43.5 35 0.0012 21.7 4.2 44 136-179 6-49 (71)
38 1txp_A HnRNP C, heterogeneous 42.4 8.5 0.00029 20.1 0.8 24 140-167 3-26 (28)
39 1utr_A Uteroglobin; clara cell 42.3 28 0.00094 23.8 3.7 42 121-162 41-83 (96)
40 3v2d_S 50S ribosomal protein L 42.0 49 0.0017 23.3 5.1 60 3-64 35-95 (112)
41 1nhl_A Synaptosomal-associated 42.0 43 0.0015 20.2 4.2 40 140-179 4-43 (54)
42 3b5n_B Protein SSO1; snare com 41.2 41 0.0014 21.3 4.2 44 136-179 10-53 (69)
43 1n7s_B Syntaxin 1A; neuronal s 39.8 44 0.0015 21.0 4.2 43 136-178 12-54 (68)
44 1gl2_B Syntaxin 7; membrane pr 39.5 46 0.0016 20.8 4.2 44 136-179 9-52 (65)
45 1jth_B Syntaxin 1A; coiled-coi 38.2 46 0.0016 21.5 4.2 43 136-178 10-52 (77)
46 1l4a_C S-SNAP25 fusion protein 37.5 50 0.0017 21.9 4.3 50 133-182 24-73 (83)
47 1n7s_A Vesicle-associated memb 37.0 33 0.0011 21.3 3.2 49 145-193 6-55 (63)
48 1n7s_C SNAP-25A; neuronal snar 36.8 62 0.0021 21.1 4.7 47 133-179 20-66 (79)
49 3b5n_A Synaptobrevin homolog 1 35.0 38 0.0013 20.9 3.2 49 145-193 4-53 (61)
50 1urq_A M-tomosyn isoform; tran 34.9 32 0.0011 21.6 2.9 44 139-182 14-57 (63)
51 1lgh_A LH II, B800/850, light 33.3 42 0.0014 20.6 3.1 25 195-219 16-42 (56)
52 3lcn_C MRNA transport factor G 32.9 24 0.00083 18.4 1.6 21 135-155 5-25 (29)
53 1sfc_A VAMP 2, protein (synapt 30.6 51 0.0017 22.5 3.5 52 142-193 29-81 (96)
54 3r8s_O 50S ribosomal protein L 29.3 52 0.0018 23.3 3.5 60 3-64 34-99 (116)
55 2dw3_A Intrinsic membrane prot 26.5 1.3E+02 0.0044 19.6 4.7 21 182-202 8-32 (77)
56 1sfc_B Protein (syntaxin 1A), 26.3 94 0.0032 20.3 4.2 43 136-178 21-63 (83)
57 2akf_A Coronin-1A; coiled coil 26.2 36 0.0012 17.9 1.6 15 156-170 15-29 (32)
58 1zkr_A Major allergen I polype 25.4 88 0.003 23.3 4.2 43 121-163 21-65 (153)
59 1l4a_A Synaptobrevin; snare, s 24.9 51 0.0018 21.5 2.6 51 143-193 15-66 (80)
60 3t12_B Gliding protein MGLB; G 24.7 2E+02 0.0068 20.7 9.6 84 6-98 31-126 (136)
61 2ygg_A Sodium/hydrogen exchang 23.1 43 0.0015 21.6 1.8 22 142-163 6-27 (70)
62 3h3g_B Parathyroid hormone-rel 23.1 41 0.0014 16.9 1.4 8 187-194 5-12 (24)
63 1j3w_A Giding PROTEIN-MGLB; gl 22.6 2.4E+02 0.0081 20.9 11.3 83 6-98 34-129 (163)
64 3b5n_C Protein transport prote 21.9 1.2E+02 0.004 19.4 3.8 55 135-189 11-66 (70)
65 2pjw_V Vacuolar protein sortin 21.4 1.9E+02 0.0066 19.4 5.3 58 117-174 13-71 (91)
66 3leq_A Uncharacterized protein 20.9 2.2E+02 0.0076 19.9 8.3 46 52-98 70-116 (126)
67 3din_D Preprotein translocase 20.6 1.2E+02 0.004 18.9 3.6 14 181-194 5-20 (65)
68 1pd7_B MAD1; PAH2, SIN3, eukar 20.1 58 0.002 16.6 1.6 21 154-174 3-23 (26)
No 1
>2nut_C Vesicle-trafficking protein SEC22B; human copii SEC23/24 complexed with SEC22, protein transport; 2.30A {Homo sapiens} PDB: 2nup_C 3egd_C 3egx_C 1ifq_A
Probab=100.00 E-value=2.1e-52 Score=339.07 Aligned_cols=190 Identities=27% Similarity=0.575 Sum_probs=122.0
Q ss_pred CcEEEEEEEecCCeeeeeeccCCCCCCCChhHHHHHHHHHHHHcCCCCCCCCceEEEEcCeEEEEEeeCCcEEEEEEeCC
Q 027525 1 MVKMTIVGRVSDGLPLARGPRYLNQEHDSFSFYKQQAEFILKEISRGALAPSKMTIRVDHHSFHYLMENGIGCFITLCDS 80 (222)
Q Consensus 1 mI~y~~IaR~~d~~iLae~~~~~~~~~~~~~~~~~~a~~il~~i~~~~~~~~k~s~~~~~~~~h~l~~~~~~~~~cvtd~ 80 (222)
||+|+||||.+|++|||++++.+...+.+..+++.+++.++++++++. ++|++++.++|+|||+.++| ++|+||||+
T Consensus 2 Mi~ya~IaR~~d~~iLa~~~d~~~~~~~~~~~~~~~a~~il~ki~~~~--~~r~s~~~~~y~fhy~~~~g-l~~l~i~d~ 78 (196)
T 2nut_C 2 MVLLTMIARVADGLPLAASMQEDEQSGRDLQQYQSQAKQLFRKLNEQS--PTRCTLEAGAMTFHYIIEQG-VCYLVLCEA 78 (196)
T ss_dssp CCCCEEEEETTTCCEEEEECCCC-----CHHHHHHHHHHHHHHCCTTS--CSEEEEEETTEEEEEEEETT-EEEEEEEET
T ss_pred ceEEEEEEEcCCCcEEEEeecccccccccHHHHHHHHHHHHHhcCCCC--CCeEEEEeCCEEEEEEeCCC-eEEEEEEcC
Confidence 999999999888999999997521112235567789999999999733 89999999999999999999 999999999
Q ss_pred CCChHHHHHHHHHHHHHH-hcchhhhhcccCCCcccccchHHHHHHHHhccCchhhhhHHHHHhhhccchhHHHHhHHHH
Q 027525 81 SYPRKLAFHYLQDLQKEF-QKFDISLIDKITRPYSCVKFESIIGNIRKQYVDTRTQANLSKLNANRGQDLDIVIEHMYQI 159 (222)
Q Consensus 81 ~~p~~~af~fL~ei~~~F-~~~~~~~~~~~~~~~~~~~f~~~l~~~~~~yn~~~~~dkl~~i~~~v~~vk~im~~Ni~~i 159 (222)
+||+++||.||++|+++| ..|+. .+...++||++.+|++.|+++|++|+||++.|++.+++++|+||++||++||+++
T Consensus 79 ~yp~r~af~fL~~i~~~F~~~~~~-~~~~~~~~~~~~~f~~~l~~~~~~y~~~~~~d~l~~~~~~l~ev~~im~~ni~~v 157 (196)
T 2nut_C 79 AFPKKLAFAYLEDLHSEFDEQHGK-KVPTVSRPYSFIEFDTFIQKTKKLYIDSRARRNLGSINTELQDVQRIMVANIEEV 157 (196)
T ss_dssp TSCHHHHHHHHHHHHHHHHHHHTT-TTTTCCSTTTTGGGHHHHHHHHTTTSCCC-----------------CCEEEHHHH
T ss_pred CcchHHHHHHHHHHHHHHHHhccc-hhccccCCCchHHHHHHHHHHHHHhcCccchhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999 99975 3444468999999999999999999999989999999999999999999999999
Q ss_pred HHchhchHHHHHHHHHHHhhcccc-CCchHHHHHHH
Q 027525 160 VERKRQSEISEEILTATRKHVSSI-WGSPRLEVIAL 194 (222)
Q Consensus 160 l~Rge~le~L~~kt~~L~~~s~~F-~~a~kl~r~~w 194 (222)
|+|||+||.|++||++|+.+|..| ++|++++|+||
T Consensus 158 l~Rge~l~~L~~ks~~L~~~s~~f~~~a~~l~~~~~ 193 (196)
T 2nut_C 158 LQRGEALSALDSKANNLSSLSKKYRQDAKYLNMRST 193 (196)
T ss_dssp C-----------------------------------
T ss_pred HHccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999 99999999998
No 2
>4b93_A Vesicle-associated membrane protein 7; endocytosis, exocytosis, snare; 2.00A {Mus musculus} PDB: 2dmw_A
Probab=100.00 E-value=1.3e-53 Score=344.02 Aligned_cols=181 Identities=18% Similarity=0.291 Sum_probs=143.4
Q ss_pred cEEEEEEEecCCeeeeeeccCCCCCCCChhHHHHHHHHHHHHcCCCCCCCCceEEEEcCeEEEEEeeCCcEEEEEEeCCC
Q 027525 2 VKMTIVGRVSDGLPLARGPRYLNQEHDSFSFYKQQAEFILKEISRGALAPSKMTIRVDHHSFHYLMENGIGCFITLCDSS 81 (222)
Q Consensus 2 I~y~~IaR~~d~~iLae~~~~~~~~~~~~~~~~~~a~~il~~i~~~~~~~~k~s~~~~~~~~h~l~~~~~~~~~cvtd~~ 81 (222)
|+|+|||| |++|||||+. .+|||. .+++.+|+++|+. ++|+++++|+|+|||+.++| ++|+|+||.+
T Consensus 4 ilYa~VAr--g~~iLae~t~----~~gnf~---~ia~~iL~kip~~---~~k~s~~~~~y~fHyl~~~g-l~yl~i~d~~ 70 (189)
T 4b93_A 4 ILFAVVAR--GTTILAKHAW----CGGNFL---EVTEQILAKIPSE---NNKLTYSHGNYLFHYICQDR-IVYLCITDDD 70 (189)
T ss_dssp EEEEEEEE--TTEEEEEEES----SEECHH---HHHHHHHTTCCSS---SEEEEEEETTEEEEEEEETT-EEEEEEEETT
T ss_pred eEEEEEEe--CCEEEEeCCC----CCCCHH---HHHHHHHHhCCCC---CCeEEEEECCEEEEEEEeCC-eEEEEEEcCc
Confidence 89999999 9999999997 579999 6999999999986 89999999999999999999 9999999999
Q ss_pred CChHHHHHHHHHHHHHH-hcchhhhhcccCCCcccc-cchHHHHHHHHhccCchhhhhHHHHHhhhccchhHHHHhHHHH
Q 027525 82 YPRKLAFHYLQDLQKEF-QKFDISLIDKITRPYSCV-KFESIIGNIRKQYVDTRTQANLSKLNANRGQDLDIVIEHMYQI 159 (222)
Q Consensus 82 ~p~~~af~fL~ei~~~F-~~~~~~~~~~~~~~~~~~-~f~~~l~~~~~~yn~~~~~dkl~~i~~~v~~vk~im~~Ni~~i 159 (222)
||+++||.||++|+++| +.|+.. +..+.|+++. +|++.|++.|++|++|++.|++.+++++|+||++||++||+++
T Consensus 71 yp~r~af~fL~~i~~eF~~~~~~~--~~~~~~~~~~~~f~~~l~~~~~~y~d~~~~d~l~~~~~~l~ev~~im~~Ni~~v 148 (189)
T 4b93_A 71 FERSRAFSFLNEVKKRFQTTYGSR--AQTALPYAMNSEFSSVLAAQLKHHSENKSLDKVMETQAQVDELKGIMVRNIDLV 148 (189)
T ss_dssp SCHHHHHHHHHHHHHHHHHHHGGG--GGTCCTTTTHHHHHHHHHHHHHHHHCC-------CCHHHHHTTTTCCEECCCCB
T ss_pred cCHHHHHHHHHHHHHHHHhhcccc--ccccCCccccchhhHHHHHHHHhhhcccchhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999 999763 3345788875 8999999999999999989999999999999999999999999
Q ss_pred HHchhchHHHHHHHHHHHhhcccc-CCchHHHHHHH-hhh
Q 027525 160 VERKRQSEISEEILTATRKHVSSI-WGSPRLEVIAL-KWT 197 (222)
Q Consensus 160 l~Rge~le~L~~kt~~L~~~s~~F-~~a~kl~r~~w-K~~ 197 (222)
|+|||+||.|++||++|+.+|..| ++|++|+|+|| |+.
T Consensus 149 l~Rge~l~~L~~ks~~L~~~s~~f~~~a~~l~r~mwwkn~ 188 (189)
T 4b93_A 149 AQRGERLELLIDKTENLVDSSVTFKTTSRNLARAMCMKNI 188 (189)
T ss_dssp CTTSSBCCCCEETTCC------------------------
T ss_pred HHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 999999999999999999999999 99999999998 553
No 3
>3kyq_A YKT6, synaptobrevin homolog YKT6; V-snare homolog, lipid binding, cytoplasmic vesicle, ER-GOLG transport, golgi apparatus, lipoprotein; HET: DPV; 2.44A {Rattus norvegicus}
Probab=100.00 E-value=1.2e-38 Score=257.92 Aligned_cols=181 Identities=14% Similarity=0.174 Sum_probs=148.3
Q ss_pred cEEEEEEEecCC--eeeeeeccCCC---CCCCChhH-HHHHHHHHHHHcCCCCCCCCceEEEEcCeEEE-EEeeCCcEEE
Q 027525 2 VKMTIVGRVSDG--LPLARGPRYLN---QEHDSFSF-YKQQAEFILKEISRGALAPSKMTIRVDHHSFH-YLMENGIGCF 74 (222)
Q Consensus 2 I~y~~IaR~~d~--~iLae~~~~~~---~~~~~~~~-~~~~a~~il~~i~~~~~~~~k~s~~~~~~~~h-~l~~~~~~~~ 74 (222)
|++..|.|..+. ++|+...+.++ -..++..+ +.-.++.+++++++ ++|++++.|+|.|| |+.++| ++|
T Consensus 4 ~~~~~v~~~~~~~~~~l~~~~dlssf~~f~r~sv~ef~~f~~r~il~r~~~----~~r~s~~~~~y~fH~y~~~~g-l~y 78 (199)
T 3kyq_A 4 LYSLSVFYKGEPKAVLLKAAYDVSSFSFFQRSSVQEFMTFTSQLIVERSAK----GSRASVKEQEYLCHVYVRSDS-LAG 78 (199)
T ss_dssp EEEEEEEEECSSCEEEEEEEECCTTSCTTTHHHHHHHHHHHHHHHHHTSCT----TEEEEEECSSEEEEEEECTTS-EEE
T ss_pred EEEEEEEEcCCCCceEEeeecccccccceehHhHHHHHHHHHHHHHhcCCC----CCeEEEEeCCEEEEEEEecCC-EEE
Confidence 566677774333 56777766421 01111122 22456799999887 68999999999999 899999 999
Q ss_pred EEEeCCCCChHHHHHHHHHHHHHH-hcchhhhh-cccCCCcccccchHHHHHHHHhccCchhhhhHHHHHhhhccchhHH
Q 027525 75 ITLCDSSYPRKLAFHYLQDLQKEF-QKFDISLI-DKITRPYSCVKFESIIGNIRKQYVDTRTQANLSKLNANRGQDLDIV 152 (222)
Q Consensus 75 ~cvtd~~~p~~~af~fL~ei~~~F-~~~~~~~~-~~~~~~~~~~~f~~~l~~~~~~yn~~~~~dkl~~i~~~v~~vk~im 152 (222)
+|+||++||+++||.||++|+++| +.|+...+ ....+|+ .| +.+++.|++|+||++.|++.+++++|+||++||
T Consensus 79 l~itd~~yp~r~AF~fL~ei~~eF~~~~~~~~~~~~~~~~~---~f-~~l~~~m~~Y~dp~~~d~l~~~q~el~evk~iM 154 (199)
T 3kyq_A 79 VVIADSEYPSRVAFTLLEKVLDEFSKQVDRIDWPVGSPATI---HY-TALDGHLSRYQNPREADPMSKVQAELDETKIIL 154 (199)
T ss_dssp EEEEETTSCHHHHHHHHHHHHHHHHHHSCGGGSTTCCTTTC---CC-CTHHHHHHHTTSGGGCCCCHHHHHHHHTCCCEE
T ss_pred EEEECCCCCHHHHHHHHHHHHHHHHHhccchhhhccccccc---cc-HHHHHHHHHhCCchhhhhHHHHHHHHHHHHHHH
Confidence 999999999999999999999999 99975322 1233455 46 678889999999999999999999999999999
Q ss_pred HHhHHHHHHchhchHHHHHHHHHHHhhcccc-CCchHHHH
Q 027525 153 IEHMYQIVERKRQSEISEEILTATRKHVSSI-WGSPRLEV 191 (222)
Q Consensus 153 ~~Ni~~il~Rge~le~L~~kt~~L~~~s~~F-~~a~kl~r 191 (222)
++||+++|+|||+||+|++||++|+.+|..| ++|+++++
T Consensus 155 ~~NI~~vl~RgekLd~L~~ks~~L~~~s~~F~k~a~~lns 194 (199)
T 3kyq_A 155 HNTMESLLERGEKLDDLVSKSEVLGTQSKAFYKTARKQNS 194 (199)
T ss_dssp ESSGGGTSCTTCCHHHHHHHCSSSCHHHHHHHHHHHHHC-
T ss_pred HHHHHHHHHccchHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 9999999999999999999999999999999 99999985
No 4
>4afi_A AP-3 complex subunit delta-1, vesicle-associated protein 7; endocytosis, exocytosis, clathrin adaptor, chimera, fusion P; 2.80A {Homo sapiens}
Probab=99.97 E-value=5.3e-31 Score=208.35 Aligned_cols=115 Identities=23% Similarity=0.418 Sum_probs=108.0
Q ss_pred cEEEEEEEecCCeeeeeeccCCCCCCCChhHHHHHHHHHHHHcCCCCCCCCceEEEEcCeEEEEEeeCCcEEEEEEeCCC
Q 027525 2 VKMTIVGRVSDGLPLARGPRYLNQEHDSFSFYKQQAEFILKEISRGALAPSKMTIRVDHHSFHYLMENGIGCFITLCDSS 81 (222)
Q Consensus 2 I~y~~IaR~~d~~iLae~~~~~~~~~~~~~~~~~~a~~il~~i~~~~~~~~k~s~~~~~~~~h~l~~~~~~~~~cvtd~~ 81 (222)
|+|+|||| |++|||||+. .+|||. .+++.+|+++|++ ++|++++.++|+|||++++| ++|+||||++
T Consensus 56 I~Ya~VAr--g~tiLAE~t~----~~gnf~---~va~~iL~kip~~---~~r~t~~~~~y~fHyl~~dg-l~yl~i~D~~ 122 (173)
T 4afi_A 56 ILFAVVAR--GTTILAKHAW----CGGNFL---EVTEQILAKIPSE---NNKLTYSHGNYLFHYICQDR-IVYLCITDDD 122 (173)
T ss_dssp EEEEEEEE--TTEEEEEEES----SCCCHH---HHHHHHHTTSCSS---SEEEEEEETTEEEEEEEETT-EEEEEEEETT
T ss_pred EEEEEEEC--CCEEEEEccC----CCCCHH---HHHHHHHHhCCCC---CCeEEEEECCEEEEEEEECC-EEEEEEECCc
Confidence 89999999 9999999998 579999 7999999999986 78999999999999999999 9999999999
Q ss_pred CChHHHHHHHHHHHHHH-hcchhhhhcccCCCcccc-cchHHHHHHHHhccC
Q 027525 82 YPRKLAFHYLQDLQKEF-QKFDISLIDKITRPYSCV-KFESIIGNIRKQYVD 131 (222)
Q Consensus 82 ~p~~~af~fL~ei~~~F-~~~~~~~~~~~~~~~~~~-~f~~~l~~~~~~yn~ 131 (222)
||+++||+||++|+++| ++|+. .+..++||+++ +|++.|+++|++||+
T Consensus 123 ~~rr~aF~FLedI~~eF~~~yg~--~~~ta~pya~~~eF~~~L~~~M~~yn~ 172 (173)
T 4afi_A 123 FERSRAFSFLNEVKKRFQTTYGS--RAQTALPYAMNSEFSSVLAAQLKHHSE 172 (173)
T ss_dssp SCHHHHHHHHHHHHHHHHHHHGG--GGGTCCTTTTHHHHHHHHHHHHHHHHH
T ss_pred cChhHHHHHHHHHHHHHHHHhch--hhhhccCcchhHHHHHHHHHHHHHhcC
Confidence 99999999999999999 99975 34557999998 999999999999985
No 5
>2vx8_A Nucleoporin-like protein RIP, vesicle-associated membrane protein 7; endocytosis,exocytosis, endocytosis, exocytosis, acetylation, coiled coil; 2.2A {Homo sapiens} PDB: 2dmw_A
Probab=99.94 E-value=5.1e-27 Score=184.95 Aligned_cols=116 Identities=22% Similarity=0.416 Sum_probs=100.9
Q ss_pred cEEEEEEEecCCeeeeeeccCCCCCCCChhHHHHHHHHHHHHcCCCCCCCCceEEEEcCeEEEEEeeCCcEEEEEEeCCC
Q 027525 2 VKMTIVGRVSDGLPLARGPRYLNQEHDSFSFYKQQAEFILKEISRGALAPSKMTIRVDHHSFHYLMENGIGCFITLCDSS 81 (222)
Q Consensus 2 I~y~~IaR~~d~~iLae~~~~~~~~~~~~~~~~~~a~~il~~i~~~~~~~~k~s~~~~~~~~h~l~~~~~~~~~cvtd~~ 81 (222)
|+|+||+| |++|||||++ .+++|. .+++.+++++++. ++|++++.|+|+|||+.+|| ++|+||||++
T Consensus 46 ilYa~VaR--G~~VLae~t~----~~gnf~---~iak~ll~kl~~~---~~r~s~~~~~y~fHyl~~ng-l~yl~I~D~~ 112 (169)
T 2vx8_A 46 ILFAVVAR--GTTILAKHAW----CGGNFL---EVTEQILAKIPSE---NNKLTYSHGNYLFHYICQDR-IVYLCITDDD 112 (169)
T ss_dssp CCEEEEEE--TTEEEEEEES----SCBSHH---HHHHHHHTTSCSS---CEEEEEEETTEEEEEEEETT-EEEEEEEETT
T ss_pred eEEEEEEc--CCEEEEEecc----CCCCHH---HHHHHHHhhCCCC---CCceEEEECCEEEEEEEECC-EEEEEEEccc
Confidence 89999999 9999999997 578999 6999999999985 78999999999999999999 9999999999
Q ss_pred CChHHHHHHHHHHHHHH-hcchhhhhcccCCCcccc-cchHHHHHHHHhccCc
Q 027525 82 YPRKLAFHYLQDLQKEF-QKFDISLIDKITRPYSCV-KFESIIGNIRKQYVDT 132 (222)
Q Consensus 82 ~p~~~af~fL~ei~~~F-~~~~~~~~~~~~~~~~~~-~f~~~l~~~~~~yn~~ 132 (222)
||+++||.||++|+++| +.|+. . +..++||+++ +|++.|++.|++|++.
T Consensus 113 yp~r~AF~fLedI~~eF~~~y~~-~-~~~a~pysf~~eF~~~Lk~~~~~~~~~ 163 (169)
T 2vx8_A 113 FERSRAFSFLNEVKKRFQTTYGS-R-AQTALPYAMNSEFSSVLAAQLKHHSEN 163 (169)
T ss_dssp SCHHHHHHHHHHHHHHHHHHHTT-G-GGTCCTTTTHHHHHHHHSCC-------
T ss_pred cchHHHHHHHHHHHHHHHHHhhh-h-hhccCCcchhHHHHHHHHHHHHHhcCc
Confidence 99999999999999999 99975 2 3345899998 9999999999999753
No 6
>3bw6_A Synaptobrevin homolog YKT6; YKT6P, farnesylation, vacuole fusion, snare, coiled coil, lipoprotein, membrane, phosphoprotein; 2.50A {Saccharomyces cerevisiae} PDB: 1h8m_A 1iou_A
Probab=99.92 E-value=1.6e-24 Score=166.93 Aligned_cols=128 Identities=19% Similarity=0.218 Sum_probs=98.4
Q ss_pred CcEEEE-EEEecC--CeeeeeeccCCC---CCCCChhHH-HHHHHHHHHHcCCCCCCCCceEEEEcCeEEEEE-eeCCcE
Q 027525 1 MVKMTI-VGRVSD--GLPLARGPRYLN---QEHDSFSFY-KQQAEFILKEISRGALAPSKMTIRVDHHSFHYL-MENGIG 72 (222)
Q Consensus 1 mI~y~~-IaR~~d--~~iLae~~~~~~---~~~~~~~~~-~~~a~~il~~i~~~~~~~~k~s~~~~~~~~h~l-~~~~~~ 72 (222)
|.+|++ |+|.++ +++|+++++.+. -+.++..++ +.+++.+++|+++ ++|++++.++|+|||+ .++| +
T Consensus 5 Mkl~~~~v~r~~~~~~~~L~~~~d~s~f~ffqr~sv~ef~~~~ar~i~~r~~~----~~R~sv~~~~y~fH~~~~~~g-l 79 (144)
T 3bw6_A 5 MRIYYIGVFRSGGEKALELSEVKDLSQFGFFERSSVGQFMTFFAETVASRTGA----GQRQSIEEGNYIGHVYARSEG-I 79 (144)
T ss_dssp CCEEEEEEEECCSSSCEEEEEEECCTTSCTTTTTHHHHHHHHHHHHHHHHCCT----TEEEEEEETTEEEEEEECTTS-E
T ss_pred EEEEEEEEEecCCCCCeEeEeeecccccChhhhhhHHHHHHHHHHHHHhhCCC----CceEEEEeCCEEEEEEEecCC-E
Confidence 555555 999544 899999998521 012222433 5789999999997 5899999999999999 7899 9
Q ss_pred EEEEEeCCCCChHHHHHHHHHHHHHH-hcchhhhhcccCC---CcccccchHHHHHHHHhccCchhhhh
Q 027525 73 CFITLCDSSYPRKLAFHYLQDLQKEF-QKFDISLIDKITR---PYSCVKFESIIGNIRKQYVDTRTQAN 137 (222)
Q Consensus 73 ~~~cvtd~~~p~~~af~fL~ei~~~F-~~~~~~~~~~~~~---~~~~~~f~~~l~~~~~~yn~~~~~dk 137 (222)
+|+|+||++||+|+||.||++|+++| ++|+...+....+ |+ .| +.|++.|++|+||++.|+
T Consensus 80 ~~l~i~D~~yp~rvAF~~L~~i~~eF~~~y~~~~~~~~~~~~~~~---~f-~~l~~~i~kYqdp~~aD~ 144 (144)
T 3bw6_A 80 CGVLITDKEYPVRPAYTLLNKILDEYLVAHPKEEWADVTETNDAL---KM-KQLDTYISKYQDPSQADA 144 (144)
T ss_dssp EEEEEEETTSCHHHHHHHHHHHHHHHHHHSCGGGTTTCSSCCGGG---CC-THHHHHHHHTSCC-----
T ss_pred EEEEEECCCCChhHHHHHHHHHHHHHHHHccchhhhhcccccCCc---ch-HHHHHHHHHhCchhhcCC
Confidence 99999999999999999999999999 9998643444445 44 55 788888889999988774
No 7
>3hd7_A Vesicle-associated membrane protein 2; membrane protein, coiled-coil, 4-helical bundle, cell juncti cytoplasmic vesicle, membrane, phosphoprotein; HET: GGG; 3.40A {Rattus norvegicus} PDB: 3hd9_A 3ipd_A
Probab=99.92 E-value=1.5e-25 Score=159.09 Aligned_cols=76 Identities=14% Similarity=0.161 Sum_probs=67.8
Q ss_pred hhhhHHHHHhhhccchhHHHHhHHHHHHchhchHHHHHHHHHHHhhcccc-CCchHHHHHHH----hhhHHHHHHHHHHH
Q 027525 134 TQANLSKLNANRGQDLDIVIEHMYQIVERKRQSEISEEILTATRKHVSSI-WGSPRLEVIAL----KWTPIAIIVAVAAI 208 (222)
Q Consensus 134 ~~dkl~~i~~~v~~vk~im~~Ni~~il~Rge~le~L~~kt~~L~~~s~~F-~~a~kl~r~~w----K~~~i~~~~~~~~~ 208 (222)
++|++.+++++|+||+++|++||+++|+|||+||+|++||++|+.+|..| ++|++++|+|| |+++++++++++++
T Consensus 3 ~~d~l~~vq~ev~evk~iM~~NI~kvL~RgekL~~L~~kt~~L~~~s~~F~~~A~~l~rkmwwkn~K~~iii~~iv~~il 82 (91)
T 3hd7_A 3 HMRRLQQTQAQVDEVVDIMRVNVDKVLERDQKLSELDDRADALQAGASQFETSAAKLKRKYWWKNLKMMIILGVICAIIL 82 (91)
T ss_dssp TTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35899999999999999999999999999999999999999999999999 99999999998 66666665554444
Q ss_pred H
Q 027525 209 L 209 (222)
Q Consensus 209 ~ 209 (222)
+
T Consensus 83 ~ 83 (91)
T 3hd7_A 83 I 83 (91)
T ss_dssp H
T ss_pred H
Confidence 3
No 8
>2kog_A Vesicle-associated membrane protein 2; synaptobrevin, VAMP2, DPC micelle, snare, coiled coil, membrane fusion, transmembrane; NMR {Rattus norvegicus}
Probab=99.87 E-value=2.3e-24 Score=159.95 Aligned_cols=62 Identities=15% Similarity=0.171 Sum_probs=60.0
Q ss_pred hhhhhHHHHHhhhccchhHHHHhHHHHHHchhchHHHHHHHHHHHhhcccc-CCchHHHHHHH
Q 027525 133 RTQANLSKLNANRGQDLDIVIEHMYQIVERKRQSEISEEILTATRKHVSSI-WGSPRLEVIAL 194 (222)
Q Consensus 133 ~~~dkl~~i~~~v~~vk~im~~Ni~~il~Rge~le~L~~kt~~L~~~s~~F-~~a~kl~r~~w 194 (222)
.+.|++.+++.+|+||++||++||+++|+|||+||+|++||++|+.+|..| ++|++++|+||
T Consensus 30 ~~~d~l~~vq~evdeVk~IM~~NIdkvLeRGEkLd~L~~KTe~L~~~S~~F~k~A~kl~rkmw 92 (119)
T 2kog_A 30 TSNRRLQQTQAQVDEVVDIMRVNVDKVLERDQKLSELDDRADALQAGASQFETSAAKLKRKYW 92 (119)
T ss_dssp SSCSHHHHSSHHHHHHHHHHHHHHHHHHCCCCSSCCCCSCCSCCCSSSHHHHHHHHHHHHHHS
T ss_pred ccchHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345999999999999999999999999999999999999999999999999 99999999998
No 9
>2nps_A VAMP-4, vesicle-associated membrane protein 4; vesicle fusion, snare complex, early endosomal snare complex, VTI1A, VAMP4, transport protein; 2.50A {Mus musculus}
Probab=99.85 E-value=1.7e-22 Score=138.13 Aligned_cols=64 Identities=9% Similarity=0.160 Sum_probs=60.2
Q ss_pred CchhhhhHHHHHhhhccchhHHHHhHHHHHHchhchHHHHHHHHHHHhhcccc-CCchHHHHHHH
Q 027525 131 DTRTQANLSKLNANRGQDLDIVIEHMYQIVERKRQSEISEEILTATRKHVSSI-WGSPRLEVIAL 194 (222)
Q Consensus 131 ~~~~~dkl~~i~~~v~~vk~im~~Ni~~il~Rge~le~L~~kt~~L~~~s~~F-~~a~kl~r~~w 194 (222)
+|++.|++.+++.+|++|++||.+||+++|+|||+||.|++||++|+.+|..| ++|++++|+||
T Consensus 3 ~~~~~d~l~~vq~el~ev~~iM~~NI~~vL~RgekLd~L~~ks~~L~~~s~~F~~~a~~l~r~~w 67 (74)
T 2nps_A 3 MGPRNDKIKHVQNQVDEVIDVMQENITKVIERGERLDELQDKSESLSDNATAFSNRSKQLRRQMW 67 (74)
T ss_dssp ---CCSSSHHHHTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred CchhhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 56677999999999999999999999999999999999999999999999999 99999999998
No 10
>3b5n_A Synaptobrevin homolog 1; snare complex, syntaxin, synaptobrevin, SNAP-25, SSO1P, SNC1P, SEC9P, SSO1, SNC1, coiled coil; 1.60A {Saccharomyces cerevisiae} SCOP: h.1.15.1
Probab=99.84 E-value=7e-22 Score=130.03 Aligned_cols=59 Identities=14% Similarity=0.205 Sum_probs=58.4
Q ss_pred hhHHHHHhhhccchhHHHHhHHHHHHchhchHHHHHHHHHHHhhcccc-CCchHHHHHHH
Q 027525 136 ANLSKLNANRGQDLDIVIEHMYQIVERKRQSEISEEILTATRKHVSSI-WGSPRLEVIAL 194 (222)
Q Consensus 136 dkl~~i~~~v~~vk~im~~Ni~~il~Rge~le~L~~kt~~L~~~s~~F-~~a~kl~r~~w 194 (222)
|++.+++.+|++|++||.+||+++|+|||+||.|++||++|+.+|..| ++|++|+|+||
T Consensus 2 d~l~~vq~~l~evk~iM~~NI~~vl~RgekLd~L~~ks~~L~~~s~~F~~~a~~l~r~mW 61 (61)
T 3b5n_A 2 SRTAELQAEIDDTVGIMRDNINKVAERGERLTSIEDKADNLAVSAQGFKRGANRVRKAMW 61 (61)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhC
Confidence 789999999999999999999999999999999999999999999999 99999999999
No 11
>1n7s_A Vesicle-associated membrane protein 2; neuronal snare protein complex, four helix bundle, transport protein; 1.45A {Rattus norvegicus} SCOP: h.1.15.1 PDB: 1kil_A 3rk2_A 3rk3_A 3rl0_A 3fii_B 3g94_B
Probab=99.84 E-value=9e-22 Score=130.45 Aligned_cols=60 Identities=15% Similarity=0.169 Sum_probs=59.1
Q ss_pred hhhHHHHHhhhccchhHHHHhHHHHHHchhchHHHHHHHHHHHhhcccc-CCchHHHHHHH
Q 027525 135 QANLSKLNANRGQDLDIVIEHMYQIVERKRQSEISEEILTATRKHVSSI-WGSPRLEVIAL 194 (222)
Q Consensus 135 ~dkl~~i~~~v~~vk~im~~Ni~~il~Rge~le~L~~kt~~L~~~s~~F-~~a~kl~r~~w 194 (222)
.|++.+++.+|++|++||.+||+++|+|||+||.|++||++|+.+|..| ++|++++|+||
T Consensus 3 ~d~l~~v~~~l~ev~~iM~~NI~~vl~RGekLd~L~~ks~~L~~~s~~F~~~a~~l~r~mW 63 (63)
T 1n7s_A 3 NRRLQQTQAQVDEVVDIMRVNVDKVLERDQKLSELDDRADALQAGASQFETSAAKLKRKYW 63 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhC
Confidence 4899999999999999999999999999999999999999999999999 99999999999
No 12
>1l4a_A Synaptobrevin; snare, snare complex, membrane fusion, neurotransmission, endocytosis/exocytosis complex; 2.95A {Loligo pealei} SCOP: h.1.15.1
Probab=99.84 E-value=5.4e-22 Score=137.54 Aligned_cols=65 Identities=14% Similarity=0.122 Sum_probs=61.6
Q ss_pred ccCchhhhhHHHHHhhhccchhHHHHhHHHHHHchhchHHHHHHHHHHHhhcccc-CCchHHHHHHH
Q 027525 129 YVDTRTQANLSKLNANRGQDLDIVIEHMYQIVERKRQSEISEEILTATRKHVSSI-WGSPRLEVIAL 194 (222)
Q Consensus 129 yn~~~~~dkl~~i~~~v~~vk~im~~Ni~~il~Rge~le~L~~kt~~L~~~s~~F-~~a~kl~r~~w 194 (222)
|| |.+.|+|.+++.+|++|++||.+||+++|+|||+||.|++||++|+.+|..| ++|++|+|+||
T Consensus 9 ~~-~~~~d~l~~vq~el~ev~~iM~~NI~~vLeRGekLd~L~~kt~~L~~~s~~F~k~A~~l~rk~w 74 (80)
T 1l4a_A 9 QP-VQQSKRLQQTQAQVEEVVDIMRVNVDKVLERDSKISELDDRADALQAGASQFEASAGKLKRKFW 74 (80)
T ss_dssp CC-CCCSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTTTSTTTTHHHHHHHHHCC
T ss_pred CC-cccccHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44 4456999999999999999999999999999999999999999999999999 99999999998
No 13
>1sfc_A VAMP 2, protein (synaptobrevin 2); membrane fusion protein complex, transport protein; 2.40A {Rattus norvegicus} SCOP: h.1.15.1
Probab=99.82 E-value=3.9e-21 Score=137.38 Aligned_cols=61 Identities=15% Similarity=0.175 Sum_probs=59.6
Q ss_pred hhhhHHHHHhhhccchhHHHHhHHHHHHchhchHHHHHHHHHHHhhcccc-CCchHHHHHHH
Q 027525 134 TQANLSKLNANRGQDLDIVIEHMYQIVERKRQSEISEEILTATRKHVSSI-WGSPRLEVIAL 194 (222)
Q Consensus 134 ~~dkl~~i~~~v~~vk~im~~Ni~~il~Rge~le~L~~kt~~L~~~s~~F-~~a~kl~r~~w 194 (222)
+.|+|.+++.+|++|++||++||+++|+|||+||.|++||++|+.+|..| ++|++|+|+||
T Consensus 28 ~~d~l~~vq~eldeVk~IM~~NI~kvLeRGEkLd~L~dkse~L~~~S~~F~k~A~kl~rkmw 89 (96)
T 1sfc_A 28 SNRRLQQTQAQVDEVVDIMRVNVDKVLERDQKLSELDDRADALQAGASQFETSAAKLKRKYW 89 (96)
T ss_dssp CSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cccHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35999999999999999999999999999999999999999999999999 99999999998
No 14
>1gl2_A Endobrevin; membrane protein, membrane fusion protein complex, coiled coil, transmembrane; 1.9A {Rattus norvegicus} SCOP: h.1.15.1
Probab=99.78 E-value=3.2e-20 Score=123.58 Aligned_cols=61 Identities=8% Similarity=0.062 Sum_probs=51.8
Q ss_pred CchhhhhHHHHHhhhccchhHHHHhHHHHHHchhchHHHHHHHHHHHhhcccc-CCchHHHH
Q 027525 131 DTRTQANLSKLNANRGQDLDIVIEHMYQIVERKRQSEISEEILTATRKHVSSI-WGSPRLEV 191 (222)
Q Consensus 131 ~~~~~dkl~~i~~~v~~vk~im~~Ni~~il~Rge~le~L~~kt~~L~~~s~~F-~~a~kl~r 191 (222)
+|++.|++.+++.+|++|+.||.+||+++|+|||+||.|++||++|+.+|..| ++|++|+|
T Consensus 4 ~~~~~d~l~~vq~~l~evk~iM~~NI~~vL~RgekLd~L~~ks~~L~~~s~~F~k~A~~l~r 65 (65)
T 1gl2_A 4 MSAGNDRVRNLQSEVEGVKNIMTQNVERILARGENLDHLRNKTEDLEATSEHFKTTSQKVAR 65 (65)
T ss_dssp ------CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC---
T ss_pred CchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 45667999999999999999999999999999999999999999999999999 99999986
No 15
>1urq_A M-tomosyn isoform; transport protein, tomosyn-snare complex, exocytosis, four helical bundle, coiled coil; 2.0A {Rattus norvegicus} SCOP: h.1.15.1
Probab=99.67 E-value=1.6e-17 Score=109.08 Aligned_cols=58 Identities=10% Similarity=0.022 Sum_probs=54.9
Q ss_pred hhHHHHHhhhccchhHHHHhHHHHHHchhchHHHHHHHHHHHhhcccc-CCchHHHHHH
Q 027525 136 ANLSKLNANRGQDLDIVIEHMYQIVERKRQSEISEEILTATRKHVSSI-WGSPRLEVIA 193 (222)
Q Consensus 136 dkl~~i~~~v~~vk~im~~Ni~~il~Rge~le~L~~kt~~L~~~s~~F-~~a~kl~r~~ 193 (222)
.++.+++.++++|+++|.+||++++||||+|+.|++||++|..+|..| +.|++|+++|
T Consensus 4 ~~i~~v~~qv~ev~~iM~~ni~kvlERGekL~~L~dkT~~L~~~A~~F~~~A~~l~~Ky 62 (63)
T 1urq_A 4 GGIEGVKGAASGVVGELARARLALDERGQKLSDLEERTAAMMSSADSFSKHAHEMMLKY 62 (63)
T ss_dssp --CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 479999999999999999999999999999999999999999999999 9999999886
No 16
>3fie_C Fragment of vesicle-associated membrane protein 2; BONT F, VAMP, inhibitor, complex structure, acetylation, cell junction, hydrolase; 2.10A {Clostridium botulinum}
Probab=98.64 E-value=4.2e-10 Score=66.15 Aligned_cols=31 Identities=19% Similarity=0.300 Sum_probs=29.3
Q ss_pred hhhhHHHHHhhhccchhHHHHhHHHHHHchh
Q 027525 134 TQANLSKLNANRGQDLDIVIEHMYQIVERKR 164 (222)
Q Consensus 134 ~~dkl~~i~~~v~~vk~im~~Ni~~il~Rge 164 (222)
..|++.++|.+|++|++||.+||+++|+||+
T Consensus 7 ~~d~l~~vq~qvdeVk~IM~~NIdkvLeRg~ 37 (38)
T 3fie_C 7 SNRRLQQTQAQVDEVVDIMRVNVDKVLERDC 37 (38)
T ss_dssp CCCSSCEESCCCCCSCCCCTTTHHHHSCCBC
T ss_pred chhHHHHHHHHHHHHHHHHHHhHHHHHHcCC
Confidence 3589999999999999999999999999997
No 17
>3zym_A Phosphatidylinositol-binding clathrin assembly PR vesicle-associated membrane protein...; endocytosis, synaptobrevin, VAMP2, VAMP3, AP180; HET: PO4; 2.03A {Rattus norvegicus}
Probab=98.33 E-value=1.4e-07 Score=80.66 Aligned_cols=32 Identities=13% Similarity=0.192 Sum_probs=24.0
Q ss_pred hhhHHHHHhhhccchhHHHHhHHHHHHchhch
Q 027525 135 QANLSKLNANRGQDLDIVIEHMYQIVERKRQS 166 (222)
Q Consensus 135 ~dkl~~i~~~v~~vk~im~~Ni~~il~Rge~l 166 (222)
.|.+.++|++|+||++||++|||++|+|||+|
T Consensus 279 ~d~l~~lq~~i~ev~~im~~ni~~vl~rge~l 310 (310)
T 3zym_A 279 MDRVRNLQSEVEGVKNIMTQNVERILARGENL 310 (310)
T ss_dssp -----CHHHHHHHHHHHHHHHHHHHHHHC---
T ss_pred chHHHHHHHHHHHHHHHHHHhHHHHHhccCCC
Confidence 48999999999999999999999999999986
No 18
>2fh5_A Signal recognition particle receptor alpha subunit; endomembrane targeting, GTPase, GAP, longin domain, SEDL, transport protein; HET: GTP; 2.45A {Homo sapiens} SCOP: d.110.4.4 PDB: 2go5_1
Probab=97.47 E-value=0.00041 Score=54.58 Aligned_cols=90 Identities=16% Similarity=0.193 Sum_probs=61.2
Q ss_pred EEEEEEecCCeeeeeeccCCCCCCCCh-hHHHHHHHHHHHHcCCCCCCCCceEEEEcCeEEEEEeeCCc-EEEEEEeCCC
Q 027525 4 MTIVGRVSDGLPLARGPRYLNQEHDSF-SFYKQQAEFILKEISRGALAPSKMTIRVDHHSFHYLMENGI-GCFITLCDSS 81 (222)
Q Consensus 4 y~~IaR~~d~~iLae~~~~~~~~~~~~-~~~~~~a~~il~~i~~~~~~~~k~s~~~~~~~~h~l~~~~~-~~~~cvtd~~ 81 (222)
++.+.| ||+||=+++.. ...+ ..+..+.+.++=. .. .+..+++.|+|.+.+..+|+. ++|++|=..-
T Consensus 14 ~~IfTk--GGvVLWs~~~~----~~~~~~~IN~LIr~VlLE--ER---~~~~~y~~d~ytlkW~l~NEl~LVFVvVYQ~i 82 (185)
T 2fh5_A 14 FTIFSK--GGLVLWCFQGV----SDSCTGPVNALIRSVLLQ--ER---GGNNSFTHEALTLKYKLDNQFELVFVVGFQKI 82 (185)
T ss_dssp EEEEET--TSBEEEEEBTT----TBSCCCHHHHHHHHTGGG--C----------CCCCCEEEEEEETTTTEEEEEEESCG
T ss_pred EEEEeC--CeEEEEeecCC----cccccchHHHHHHHhhhc--cc---cCCCceeEcCeEEEEEEeccCCEEEEEEEccc
Confidence 556677 99999988542 2122 2344555555532 12 234468899999999887644 9999998887
Q ss_pred CChHHHHHHHHHHHHHH-hcchhh
Q 027525 82 YPRKLAFHYLQDLQKEF-QKFDIS 104 (222)
Q Consensus 82 ~p~~~af~fL~ei~~~F-~~~~~~ 104 (222)
.+-...=.||+.++..| ..|.+.
T Consensus 83 L~L~YiD~LL~~v~~~Fv~~Y~~~ 106 (185)
T 2fh5_A 83 LTLTYVDKLIDDVHRLFRDKYRTE 106 (185)
T ss_dssp GGHHHHHHHHHHHHHHHHHHTHHH
T ss_pred ccchHHHHHHHHHHHHHHHHHHHH
Confidence 77777889999999999 999753
No 19
>3tjz_C Coatomer subunit zeta-1; protein trafficking, golgi membrane, protein transport-prote binding complex; HET: GNP; 2.90A {Bos taurus} PDB: 2hf6_A
Probab=96.24 E-value=0.13 Score=39.08 Aligned_cols=93 Identities=14% Similarity=0.019 Sum_probs=69.8
Q ss_pred CcEEEEEEEecCCeeeeeeccCCCCCCCChhHHHHHHHHHHHHcCCCCCCCCceEEEEcCeEEEEEeeCCcEEEEEEeCC
Q 027525 1 MVKMTIVGRVSDGLPLARGPRYLNQEHDSFSFYKQQAEFILKEISRGALAPSKMTIRVDHHSFHYLMENGIGCFITLCDS 80 (222)
Q Consensus 1 mI~y~~IaR~~d~~iLae~~~~~~~~~~~~~~~~~~a~~il~~i~~~~~~~~k~s~~~~~~~~h~l~~~~~~~~~cvtd~ 80 (222)
||.+.+|--.+|.++|+.|..+ .-.+..+.+...+.+.+++.+. + .-....+++.+.|...++ +.|+++++.
T Consensus 12 mI~~ililn~~Gk~~lsK~Y~~---~~~~~~~~~~~e~~i~~~~~r~---~-~~i~~~~~~~~vy~~~~~-Lyfv~~~~~ 83 (153)
T 3tjz_C 12 TVKAILILDNDGDRLFAKYYDD---TYPSVKEQKAFEKNIFNKTHRT---D-SEIALLEGLTVVYKSSID-LYFYVIGSS 83 (153)
T ss_dssp CEEEEEEECTTSCEEEEEECSS---SSCSHHHHHHHHHHHHHHHSSC---C-CCEEEETTEEEEEEECSS-CEEEEEEET
T ss_pred HheEEEEECCCCCEEEEEeCCC---CCCCHHHHHHHHHHHHHHHhCC---C-CCEEEECCEEEEEEEECC-EEEEEEEcC
Confidence 7788888877788999998862 1123333334455666666543 3 346778999999999999 999999999
Q ss_pred CCChHHHHHHHHHHHHHH-hcc
Q 027525 81 SYPRKLAFHYLQDLQKEF-QKF 101 (222)
Q Consensus 81 ~~p~~~af~fL~ei~~~F-~~~ 101 (222)
+.+.-..+.||..+.+.+ .-|
T Consensus 84 ~eNel~ile~L~~~ve~l~~yf 105 (153)
T 3tjz_C 84 YENELMLMTVLNCLFDSLSQML 105 (153)
T ss_dssp TSCHHHHHHHHHHHHHHHHHHH
T ss_pred CCChHHHHHHHHHHHHHHHHHh
Confidence 999999999999998888 555
No 20
>2vgl_S AP-2 complex subunit sigma-1; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Mus musculus} SCOP: i.23.1.1 PDB: 2jkt_I 2jkr_I* 2xa7_S
Probab=96.06 E-value=0.23 Score=36.96 Aligned_cols=95 Identities=12% Similarity=0.090 Sum_probs=65.8
Q ss_pred CcEEEEEEEecCCeeeeeeccCCCCCCCChhHHHHHHHHHHHHcCCCCCCCCceEEEEcCeEEEEEeeCCcEEEEEEeCC
Q 027525 1 MVKMTIVGRVSDGLPLARGPRYLNQEHDSFSFYKQQAEFILKEISRGALAPSKMTIRVDHHSFHYLMENGIGCFITLCDS 80 (222)
Q Consensus 1 mI~y~~IaR~~d~~iLae~~~~~~~~~~~~~~~~~~a~~il~~i~~~~~~~~k~s~~~~~~~~h~l~~~~~~~~~cvtd~ 80 (222)
||....|.--+|.++|+.+..+ .+++ +-+...+.+.+.+.... ...--.++.+++.+-|...++ +.|+|+++.
T Consensus 1 MI~~i~i~~~~Gk~~l~k~y~~---~~~~--~~~~~~~~f~~~v~~~~-~~~~~~~~~~~~~~vy~~~~~-Lyfv~~~~~ 73 (142)
T 2vgl_S 1 MIRFILIQNRAGKTRLAKWYMQ---FDDD--EKQKLIEEVHAVVTVRD-AKHTNFVEFRNFKIIYRRYAG-LYFCICVDV 73 (142)
T ss_dssp CEEEEEEEETTSCEEEEEECSC---CCHH--HHHHHHHHHHHHHHTCC-TTSCSEEEETTEEEEEEEETT-EEEEEEECT
T ss_pred CeEEEEEEcCCCCEEEEEeCCC---CChh--hhHHHHHHHHHHHhcCC-CCCCCEEEECCEEEEEEEECC-EEEEEEeCC
Confidence 8888888876788888888762 1122 22234444444433221 022335677899888888899 999999999
Q ss_pred CCChHHHHHHHHHHHHHH-hcch
Q 027525 81 SYPRKLAFHYLQDLQKEF-QKFD 102 (222)
Q Consensus 81 ~~p~~~af~fL~ei~~~F-~~~~ 102 (222)
+.+.-..+.||..+.+-+ .-++
T Consensus 74 ~~N~l~~le~L~~~ve~l~~yf~ 96 (142)
T 2vgl_S 74 NDNNLAYLEAIHNFVEVLNEYFH 96 (142)
T ss_dssp TSCHHHHHHHHHHHHHHHHHHTT
T ss_pred CCCHHHHHHHHHHHHHHHHHHHc
Confidence 999999999999988777 4443
No 21
>1w63_Q Adapter-related protein complex 1 sigma 1A subunit; endocytosis, clathrin adaptor, transport, coated PITS; 4.0A {Mus musculus} SCOP: i.23.1.1
Probab=95.98 E-value=0.11 Score=39.48 Aligned_cols=91 Identities=8% Similarity=0.016 Sum_probs=63.8
Q ss_pred CcEEEEEEEecCCeeeeeeccCCCCCCCChhHHHHHHHHHHHHcCCCCCCCCceEEEEcCeEEEEEeeCCcEEEEEEeCC
Q 027525 1 MVKMTIVGRVSDGLPLARGPRYLNQEHDSFSFYKQQAEFILKEISRGALAPSKMTIRVDHHSFHYLMENGIGCFITLCDS 80 (222)
Q Consensus 1 mI~y~~IaR~~d~~iLae~~~~~~~~~~~~~~~~~~a~~il~~i~~~~~~~~k~s~~~~~~~~h~l~~~~~~~~~cvtd~ 80 (222)
||.+..|.--+|.++|+.+..+ ....+. +.+.+.+.+.+.... ...--.++.+++.+-|...++ +.|+|+++.
T Consensus 1 MI~~i~Il~~~Gk~~lsk~y~~---~~~~~~--~~~~~~~~~~i~~~~-~~~~~~i~~~~~~~vy~~~~~-Lyfv~~~~~ 73 (158)
T 1w63_Q 1 MMRFMLLFSRQGKLRLQKWYLA---TSDKER--KKMVRELMQVVLARK-PKMCSFLEWRDLKVVYKRYAS-LYFCCAIEG 73 (158)
T ss_dssp CEEEEEEECSSSCEEEEEESSC---CCHHHH--HHHHHHHHHHHHTSC-SSSCSEEEETTEEEEEEEETT-EEEEEEECS
T ss_pred CeEEEEEECCCCCEEEEEeCCC---CCHHHH--HHHHHHHHHHHhccC-CCCCCeEEECCEEEEEEEECC-EEEEEEecC
Confidence 8888888876688888888763 111111 134444444443321 012335677899888888899 999999999
Q ss_pred CCChHHHHHHHHHHHHHH
Q 027525 81 SYPRKLAFHYLQDLQKEF 98 (222)
Q Consensus 81 ~~p~~~af~fL~ei~~~F 98 (222)
+.+.-..+.||..+.+-+
T Consensus 74 ~~Nel~~le~L~~~vevl 91 (158)
T 1w63_Q 74 QDNELITLELIHRYVELL 91 (158)
T ss_dssp SSCHHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHH
Confidence 999999999999988777
No 22
>3hd7_B Syntaxin-1A; membrane protein, coiled-coil, 4-helical bundle, cell juncti cytoplasmic vesicle, membrane, phosphoprotein; HET: GGG; 3.40A {Rattus norvegicus} PDB: 3hd9_B 3ipd_B
Probab=95.86 E-value=0.031 Score=40.03 Aligned_cols=59 Identities=10% Similarity=0.004 Sum_probs=43.3
Q ss_pred hhHHHHHhhhccchhHHHHhHHHHHHchhchHHHHHHHHHHHhh---cccc-CCchHHHHHHH
Q 027525 136 ANLSKLNANRGQDLDIVIEHMYQIVERKRQSEISEEILTATRKH---VSSI-WGSPRLEVIAL 194 (222)
Q Consensus 136 dkl~~i~~~v~~vk~im~~Ni~~il~Rge~le~L~~kt~~L~~~---s~~F-~~a~kl~r~~w 194 (222)
+.+.++++.+.|+.+++.+==..+-+.|+.+|.++...++-... +..- +.|.+-+++..
T Consensus 21 ~eI~~Ie~~I~eL~~iF~dla~lV~eQge~Id~Ie~nv~~a~~~v~~g~~eL~kA~~yqk~~r 83 (109)
T 3hd7_B 21 SEIIKLENSIRELHDMFMDMAMLVESQGEMIDRIEYNVEHAVDYVERAVSDTKKAVKYQSKAR 83 (109)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 56888999999999998888888889999999988776655443 2233 55655555554
No 23
>2vgl_M AP-2 complex subunit MU-1; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Rattus norvegicus} PDB: 2jkr_M 2jkt_M 2bp5_M* 2xa7_M
Probab=92.32 E-value=2.5 Score=37.14 Aligned_cols=89 Identities=8% Similarity=0.082 Sum_probs=63.1
Q ss_pred CcEEEEEEEecCCeeeeeeccCCCCCCCChhHHHHHHHHHHHHcCCCCCCCCceEEEEcCeEEEEEeeCCcEEEEEEeCC
Q 027525 1 MVKMTIVGRVSDGLPLARGPRYLNQEHDSFSFYKQQAEFILKEISRGALAPSKMTIRVDHHSFHYLMENGIGCFITLCDS 80 (222)
Q Consensus 1 mI~y~~IaR~~d~~iLae~~~~~~~~~~~~~~~~~~a~~il~~i~~~~~~~~k~s~~~~~~~~h~l~~~~~~~~~cvtd~ 80 (222)
||.+..|.--.|..+|+.+... ... . ..+....+.+........--.++.+++.|.|...++ +.|+|+++.
T Consensus 1 MI~~i~I~~~~Gk~~l~k~y~~----~~~-~---~~~~~f~~~v~~~~~~~~~~ii~~~~~~~vy~~~~~-Lyfv~~~~~ 71 (435)
T 2vgl_M 1 MIGGLFIYNHKGEVLISRVYRD----DIG-R---NAVDAFRVNVIHARQQVRSPVTNIARTSFFHVKRSN-IWLAAVTKQ 71 (435)
T ss_dssp CCCEEEEECTTCCEEEEEECSS----SCC-H---HHHHHHHHHTTTCSSCCCCSEEEETTEEEEEEEETT-EEEEEEESS
T ss_pred CeEEEEEECCCCCEEEEEecCC----CCC-h---hHHHHHHHHHhccccCCCCCEEEECCEEEEEEEECC-EEEEEEecC
Confidence 8888888876677888887762 111 1 234444444443210022345678899988888899 999999999
Q ss_pred CCChHHHHHHHHHHHHHH
Q 027525 81 SYPRKLAFHYLQDLQKEF 98 (222)
Q Consensus 81 ~~p~~~af~fL~ei~~~F 98 (222)
+.+.-..+.||..+.+-+
T Consensus 72 ~~n~l~~le~L~~~v~vl 89 (435)
T 2vgl_M 72 NVNAAMVFEFLYKMCDVM 89 (435)
T ss_dssp CCCHHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHH
Confidence 999999999999988777
No 24
>1w63_M Adaptor-related protein complex 1, MU 1 subunit; endocytosis, clathrin adaptor, transport, coated PITS; 4.0A {Mus musculus} SCOP: i.23.1.1
Probab=91.79 E-value=1.4 Score=38.72 Aligned_cols=94 Identities=13% Similarity=0.127 Sum_probs=64.0
Q ss_pred CcEEEEEEEecCCeeeeeeccCCCCCCCChhHHHHHHHHHHHHcCCCCCCCCceEEEEcCeEEEEEeeCCcEEEEEEeCC
Q 027525 1 MVKMTIVGRVSDGLPLARGPRYLNQEHDSFSFYKQQAEFILKEISRGALAPSKMTIRVDHHSFHYLMENGIGCFITLCDS 80 (222)
Q Consensus 1 mI~y~~IaR~~d~~iLae~~~~~~~~~~~~~~~~~~a~~il~~i~~~~~~~~k~s~~~~~~~~h~l~~~~~~~~~cvtd~ 80 (222)
||....|.--.|..+|+.+.... ...+.. +..-+.++.+-.+. ..--.++.+++.|.|...++ +.|+|+++.
T Consensus 2 MI~~i~I~~~~Gk~~l~k~y~~~--~~~~~~--~~f~~~v~~~~~~~---~~~~~i~~~~~~~vy~~~~~-Lyfv~~~~~ 73 (423)
T 1w63_M 2 SASAVYVLDLKGKVLICRNYRGD--VDMSEV--EHFMPILMEKEEEG---MLSPILAHGGVRFMWIKHNN-LYLVATSKK 73 (423)
T ss_dssp CCCEEEEEETTTEECSCBCCSCS--CTTTTH--HHHHHHHHHHHHTS---CCCSEEEETTEEEEEEEETT-EEEEEEESS
T ss_pred ceEEEEEECCCCCEEEEEecCCC--CChHHH--HHHHHHHhhccccC---CCCCEEEECCEEEEEEEECC-EEEEEEecC
Confidence 78888888666667777766531 111211 13344444442211 22345678899988888899 999999999
Q ss_pred CCChHHHHHHHHHHHHHH-hcch
Q 027525 81 SYPRKLAFHYLQDLQKEF-QKFD 102 (222)
Q Consensus 81 ~~p~~~af~fL~ei~~~F-~~~~ 102 (222)
+.+.-..+.||..+.+-+ .-++
T Consensus 74 ~~n~l~~le~L~~~v~~l~~yf~ 96 (423)
T 1w63_M 74 NACVSLVFSFLYKVVQVFSEYFK 96 (423)
T ss_dssp CCCTHHHHHHHHHHHHHHHHHSS
T ss_pred CCCHHHHHHHHHHHHHHHHHHHh
Confidence 999999999999988877 4443
No 25
>2fz0_A R-snare NYV1P, V-snare component of the vacuolar snare complex involved in vesicle fusion; inhibits...; snare protein, longin domain; NMR {Saccharomyces cerevisiae}
Probab=90.09 E-value=0.34 Score=35.70 Aligned_cols=61 Identities=16% Similarity=0.288 Sum_probs=44.6
Q ss_pred HHHHHHHHHcCCCC-CCCCceEEE-EcCeEEEEEe---eCCcEEEEEEeCCCCChHHHHHHHHHHHH
Q 027525 35 QQAEFILKEISRGA-LAPSKMTIR-VDHHSFHYLM---ENGIGCFITLCDSSYPRKLAFHYLQDLQK 96 (222)
Q Consensus 35 ~~a~~il~~i~~~~-~~~~k~s~~-~~~~~~h~l~---~~~~~~~~cvtd~~~p~~~af~fL~ei~~ 96 (222)
.+-..++.++-+-. +.-+|++.. .|||-+||.. ++| .+++|.|..+.|+-+|...|.++++
T Consensus 49 Li~dmViPkVV~v~GNKVTKmS~~LIDGyDCYYtT~~~~~~-~VlVCFt~~dvPKILPiRlLSeLk~ 114 (149)
T 2fz0_A 49 LIMDMVLPKVVPIKGNKVTKMSMNLIDGFDCFYSTDDHDPK-TVYVCFTLVDIPKILPIRILSGLQE 114 (149)
T ss_dssp HHHHTTGGGCCCCSSCSSEECCSCCSSSEEEEECCCSSCTT-EEEEEEEETTSCSSHHHHHHHHHTT
T ss_pred HHHheecceEEecCCCeEEEEeeeccccceeeeeccCCCCC-eEEEEEEecCCcccccHHHHhhhcc
Confidence 34455566665532 123455544 4899999987 245 8999999999999999999999874
No 26
>3hd7_A Vesicle-associated membrane protein 2; membrane protein, coiled-coil, 4-helical bundle, cell juncti cytoplasmic vesicle, membrane, phosphoprotein; HET: GGG; 3.40A {Rattus norvegicus} PDB: 3hd9_A 3ipd_A
Probab=89.94 E-value=0.86 Score=31.31 Aligned_cols=47 Identities=9% Similarity=0.113 Sum_probs=23.8
Q ss_pred hHHHHHhhhccchhHHHHhHHHHHHchhchHHHHHHHHHHHhhcccc
Q 027525 137 NLSKLNANRGQDLDIVIEHMYQIVERKRQSEISEEILTATRKHVSSI 183 (222)
Q Consensus 137 kl~~i~~~v~~vk~im~~Ni~~il~Rge~le~L~~kt~~L~~~s~~F 183 (222)
.+..++.-+.+.-+-+.++=+++=+=.++-|.|.+.|.....+|...
T Consensus 13 ev~evk~iM~~NI~kvL~RgekL~~L~~kt~~L~~~s~~F~~~A~~l 59 (91)
T 3hd7_A 13 QVDEVVDIMRVNVDKVLERDQKLSELDDRADALQAGASQFETSAAKL 59 (91)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHccchHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444444444444444444444455555556666666666655
No 27
>2j3t_C Trafficking protein particle complex subunit 1, trafficking protein particle complex subunit 3; trapp, palmitate, transport, lipoprotein, ER-golgi transport apparatus, protein transport; HET: PLM; 2.4A {Mus musculus}
Probab=89.87 E-value=1.4 Score=32.80 Aligned_cols=91 Identities=10% Similarity=0.102 Sum_probs=57.6
Q ss_pred HHHHHHHcCCCCCCCCceEEEEcCeEEEEEe-eCCcEEEEEEeCCCCChHHHHHHHHHHH-HHHhcc-hhhhhcccCCCc
Q 027525 37 AEFILKEISRGALAPSKMTIRVDHHSFHYLM-ENGIGCFITLCDSSYPRKLAFHYLQDLQ-KEFQKF-DISLIDKITRPY 113 (222)
Q Consensus 37 a~~il~~i~~~~~~~~k~s~~~~~~~~h~l~-~~~~~~~~cvtd~~~p~~~af~fL~ei~-~~F~~~-~~~~~~~~~~~~ 113 (222)
+..+.+++.|.....+..+++.++|..|+.. -.| +=|+.+||+..+. .-.||.+|. +.|.+| ..+-.-....|-
T Consensus 45 l~~i~~klsp~~~~~~~~~~~t~~ykl~~~~T~Tg-iKFvl~td~~~~~--i~~~l~~iy~~lYv~~v~kNPfy~~~~pI 121 (145)
T 2j3t_C 45 IRSFVSKMSPLDMKDGFLSFQTSRYKLHYYETPTG-IKVVMNTDLGVGP--IRDVLHHIYSALYVEFVVKNPLCPLGQTV 121 (145)
T ss_dssp HHHHHHHHCSSCCSSCEEEEECSSCEEEEEECTTS-CEEEEEECTTCCC--CHHHHHHHHHTTHHHHTTTCTTSCTTSCC
T ss_pred HHHHHHHhCCCCCCCceEEEecCCEEEEEEEcCCC-CEEEEEecCCcch--HHHHHHHHHHHHHHHHHhcCCCCCCCCce
Confidence 5567778877432356778888999888654 567 9999999987554 348889988 566332 110000001122
Q ss_pred ccccchHHHHHHHHhcc
Q 027525 114 SCVKFESIIGNIRKQYV 130 (222)
Q Consensus 114 ~~~~f~~~l~~~~~~yn 130 (222)
....|+.-++++++++.
T Consensus 122 ~s~~Fd~~v~~~~~~~~ 138 (145)
T 2j3t_C 122 QSELFRSRLDSYVRSLP 138 (145)
T ss_dssp CCHHHHHHHHHHHTTST
T ss_pred ecHHHHHHHHHHHHhCc
Confidence 22369988988887654
No 28
>2j3t_D Trafficking protein particle complex subunit 4; trapp, palmitate, transport, lipoprotein, ER-golgi transport apparatus, protein transport; HET: PLM; 2.4A {Homo sapiens} PDB: 2zmv_A 2jsn_A
Probab=84.64 E-value=6.5 Score=31.41 Aligned_cols=93 Identities=14% Similarity=0.121 Sum_probs=58.3
Q ss_pred HHHHHHHcCCCCCCCCceEEEEcCeEEEEEe-eCCcEEEEEEeCCCCChHHHHHHHHHHHHHHhcc-hhhhhcccCCCcc
Q 027525 37 AEFILKEISRGALAPSKMTIRVDHHSFHYLM-ENGIGCFITLCDSSYPRKLAFHYLQDLQKEFQKF-DISLIDKITRPYS 114 (222)
Q Consensus 37 a~~il~~i~~~~~~~~k~s~~~~~~~~h~l~-~~~~~~~~cvtd~~~p~~~af~fL~ei~~~F~~~-~~~~~~~~~~~~~ 114 (222)
...+.+++.|.....+-.+++.++|..|+.. -.| +-|+++||+..+ -.-.||.+|.+.|.++ ..+-.-....|-.
T Consensus 118 Ld~i~~klsp~~~s~g~~~~~T~~ykl~~y~T~Tg-iKFVLltd~~~~--~ir~~l~~IyelYvd~V~kNPFY~~~~pI~ 194 (219)
T 2j3t_D 118 LFAIGSQLSPEQGSSGIEMLETDTFKLHCYQTLTG-IKFVVLADPRQA--GIDSLLRKIYEIYSDFALKNPFYSLEMPIR 194 (219)
T ss_dssp HHHHHHHTCSSSSCCSCSEEEESSCEEEEEECTTS-CEEEEEECTTCC--CHHHHHHHHHHHHHHHHTTCTTCCTTSCCC
T ss_pred HHHHHHHhCCCCCCCCeeEEecCceEEEEEEcCCC-CEEEEEecCCch--HHHHHHHHHHHHHHHHhccCCCCCCCCccc
Confidence 4555667776321135578888999888654 567 999999998633 3458889998777333 1100000011222
Q ss_pred cccchHHHHHHHHhccCc
Q 027525 115 CVKFESIIGNIRKQYVDT 132 (222)
Q Consensus 115 ~~~f~~~l~~~~~~yn~~ 132 (222)
...|+..++++.+.++..
T Consensus 195 s~~Fd~~v~~l~~~~~~~ 212 (219)
T 2j3t_D 195 CELFDQNLKLALEVAEKA 212 (219)
T ss_dssp CHHHHHHHHHHHHHHTTS
T ss_pred hHHHHHHHHHHHHHhhcc
Confidence 337999999999888653
No 29
>2kog_A Vesicle-associated membrane protein 2; synaptobrevin, VAMP2, DPC micelle, snare, coiled coil, membrane fusion, transmembrane; NMR {Rattus norvegicus}
Probab=80.28 E-value=0.46 Score=34.43 Aligned_cols=52 Identities=15% Similarity=0.086 Sum_probs=29.8
Q ss_pred HhhhccchhHHHHhHHHHHHchhchHHHHHHHHHHHhhcccc-CCchHHHHHH
Q 027525 142 NANRGQDLDIVIEHMYQIVERKRQSEISEEILTATRKHVSSI-WGSPRLEVIA 193 (222)
Q Consensus 142 ~~~v~~vk~im~~Ni~~il~Rge~le~L~~kt~~L~~~s~~F-~~a~kl~r~~ 193 (222)
..+++.++.-+.+..+-+.++-+++-+-.++-++|.+.|... .+|.+.++..
T Consensus 32 ~d~l~~vq~evdeVk~IM~~NIdkvLeRGEkLd~L~~KTe~L~~~S~~F~k~A 84 (119)
T 2kog_A 32 NRRLQQTQAQVDEVVDIMRVNVDKVLERDQKLSELDDRADALQAGASQFETSA 84 (119)
T ss_dssp CSHHHHSSHHHHHHHHHHHHHHHHHHCCCCSSCCCCSCCSCCCSSSHHHHHHH
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345555555555555555555555555555555556666666 6666666555
No 30
>2j3w_A Sedlin, trafficking protein particle complex protein 2; multisubunit tethering factor, trapp, palmitate, transport, lipoprotein; HET: PLM; 2.1A {Mus musculus} SCOP: d.110.4.3 PDB: 1h3q_A
Probab=78.29 E-value=17 Score=26.55 Aligned_cols=120 Identities=13% Similarity=0.058 Sum_probs=66.0
Q ss_pred EEEEEEEecCCeeeeeeccCCCCCCCChh-HH----H---HHHHHHHHHcCCCCCCCC---ceEEEEcCeEEEE-EeeCC
Q 027525 3 KMTIVGRVSDGLPLARGPRYLNQEHDSFS-FY----K---QQAEFILKEISRGALAPS---KMTIRVDHHSFHY-LMENG 70 (222)
Q Consensus 3 ~y~~IaR~~d~~iLae~~~~~~~~~~~~~-~~----~---~~a~~il~~i~~~~~~~~---k~s~~~~~~~~h~-l~~~~ 70 (222)
..+.|.| ++.+|-+..-.. ....+.. +. . --+..+++++.+.. ++ ..+...++|..|+ .+-.|
T Consensus 8 ~~~Ii~~--~~~ply~~~~~~-~~~~~~~~~~~l~~~~i~hs~ldiv~~~~~~~--~~~~l~~~~~~~~y~v~~~~T~tg 82 (142)
T 2j3w_A 8 YFVIVGH--HDNPVFEMEFLP-PGKAESKDDHRHLNQFIAHAALDLVDENMWLS--NNMYLKTVDKFNEWFVSAFVTAGH 82 (142)
T ss_dssp EEEEECT--TSCEEEEEEECC-SCCGGGHHHHHHHHHHHHHHHHHHHHHHGGGC--SCSEEEEEEEETTEEEEEEECTTC
T ss_pred EEEEEeC--CCCEEEEEecCC-cCcCCccHHHHHHHHHHHHHHHHHHHHhcCCC--CcceeEeeecccceEEEEEEcCCC
Confidence 3456677 778887664421 0111111 10 0 12344555554321 23 4566667887775 55577
Q ss_pred cEEEEEEeCCCCChHHHHHHHHHHHHHH-hcchhhhhcccCCCcccccchHHHHHHHHhcc
Q 027525 71 IGCFITLCDSSYPRKLAFHYLQDLQKEF-QKFDISLIDKITRPYSCVKFESIIGNIRKQYV 130 (222)
Q Consensus 71 ~~~~~cvtd~~~p~~~af~fL~ei~~~F-~~~~~~~~~~~~~~~~~~~f~~~l~~~~~~yn 130 (222)
+=|+.++|+. ...-.-.||++|.+.| +-..+. .-....|-....|+..++++.++|-
T Consensus 83 -~Kfvl~~d~~-~~~~i~~~~~~iy~~Y~~~v~NP-fy~~~~pI~s~~Fd~~v~~~~~~~l 140 (142)
T 2j3w_A 83 -MRFIMLHDVR-QEDGIKNFFTDVYDLYIKFAMNP-FYEPNSPIRSSAFDRKVQFLGKKHL 140 (142)
T ss_dssp -CEEEEEESSC-CHHHHHHHHHHHHHHHHHHHHST-TCCTTCCCCCHHHHHHHHHHHHHHT
T ss_pred -cEEEEEeCCC-CcHHHHHHHHHHHHHHHHHhcCC-CCCCCCceecHHHHHHHHHHHHHhc
Confidence 9999999974 2445668899999877 422110 0000112222369999998887763
No 31
>3cue_A Transport protein particle 23 kDa subunit; membrane traffic, GEF, tethering complex, RAB activation, GU nucleotide exchange factor; HET: PLM; 3.70A {Saccharomyces cerevisiae}
Probab=75.66 E-value=15 Score=29.30 Aligned_cols=77 Identities=12% Similarity=0.191 Sum_probs=47.7
Q ss_pred CceEEEEcCeEEEEE-eeCCcEEEEEEeCCCCCh----------------------HHHHHHHHHHHHHH-hcchhhhhc
Q 027525 52 SKMTIRVDHHSFHYL-MENGIGCFITLCDSSYPR----------------------KLAFHYLQDLQKEF-QKFDISLID 107 (222)
Q Consensus 52 ~k~s~~~~~~~~h~l-~~~~~~~~~cvtd~~~p~----------------------~~af~fL~ei~~~F-~~~~~~~~~ 107 (222)
+-..+..+.|.+|+. .-.| +=|++++|+..+. ...-.||.+|...| +....+-.-
T Consensus 118 g~~~~~Td~y~l~~f~T~TG-iKFVlltd~~~~~~~~s~~~~~~~~~~~~~s~l~e~~ir~ff~~VYelYvd~VmkNPFY 196 (219)
T 3cue_A 118 GLRQLCTDQFTMFIYQTLTG-LKFVAISSSVMPQRQPTIATTDKPDRPKSTSNLAIQIADNFLRKVYCLYSDYVMKDPSY 196 (219)
T ss_dssp SCCEEEESSCEEEEEECTTS-CEEEEEESSCC--------------------CHHHHHHHHHHHHHHHHHHHHHHSCTTC
T ss_pred ceEEEEeCCEEEEEEEcCCC-CEEEEEecCCCcccccccccccccccccccccchHHHHHHHHHHHHHHHHHHHhcCCCC
Confidence 566788888887754 4578 9999999987743 45678999999877 422210000
Q ss_pred ccCCCcccccchHHHHHHHHhc
Q 027525 108 KITRPYSCVKFESIIGNIRKQY 129 (222)
Q Consensus 108 ~~~~~~~~~~f~~~l~~~~~~y 129 (222)
....|-....|+.-++.+.+.+
T Consensus 197 ~~~~pI~S~~Fd~~V~~~~~~~ 218 (219)
T 3cue_A 197 SMEMPIRSNLFDEKVKKMVENL 218 (219)
T ss_dssp CTTSCCCCHHHHHHHHHHHHHH
T ss_pred CCCCccccHHHHHHHHHHHHhc
Confidence 0001111226888888877654
No 32
>3cue_C Transport protein particle 18 kDa subunit; membrane traffic, GEF, tethering complex, RAB activation, GU nucleotide exchange factor; HET: PLM; 3.70A {Saccharomyces cerevisiae}
Probab=69.78 E-value=15 Score=27.63 Aligned_cols=59 Identities=19% Similarity=0.224 Sum_probs=42.0
Q ss_pred HHHHHHHcCCCCCCCCceEEEEcCeEEEEEe-eCCcEEEEEEeCCCCChHHHHHHHHHHHH-HH
Q 027525 37 AEFILKEISRGALAPSKMTIRVDHHSFHYLM-ENGIGCFITLCDSSYPRKLAFHYLQDLQK-EF 98 (222)
Q Consensus 37 a~~il~~i~~~~~~~~k~s~~~~~~~~h~l~-~~~~~~~~cvtd~~~p~~~af~fL~ei~~-~F 98 (222)
++.+.+++.+....++-..++.+.|..|+.. -.| +-|+++||...+. .-.+|.+|.. .|
T Consensus 51 L~~i~~kls~~~~~~~f~~~~T~~ykl~~~eT~Tg-iKFvl~td~~~~~--i~~~l~~iy~~lY 111 (159)
T 3cue_C 51 LRSITQKLSKGSVKNDIRSISTGKYRVHTYCTASG-LWFVLLSDFKQQS--YTQVLQYIYSHIY 111 (159)
T ss_dssp HHHHHHHSCCSSSCCCEEEEECSSCBEEEECCSSC-CEEEEECCSSSSC--THHHHHHHHHHHH
T ss_pred HHHHHHHhCCCCCCCCeEEEeeCCEEEEEEEeCCC-CEEEEEeCCCcch--HHHHHHHHHHHHH
Confidence 5667778877422245677788899888665 467 9999999987543 2367888886 66
No 33
>1t3j_A Mitofusin 1; coiled coil antiparallel, dimer, membrane protein; 2.50A {Mus musculus} SCOP: h.4.16.1
Probab=61.49 E-value=11 Score=26.06 Aligned_cols=46 Identities=11% Similarity=0.078 Sum_probs=37.8
Q ss_pred hhHHHHHhhhccchhHHHHhHHHHHHchhchHHHHHHHHHHHhhcc
Q 027525 136 ANLSKLNANRGQDLDIVIEHMYQIVERKRQSEISEEILTATRKHVS 181 (222)
Q Consensus 136 dkl~~i~~~v~~vk~im~~Ni~~il~Rge~le~L~~kt~~L~~~s~ 181 (222)
.-...+..+|++++.-|.+-|+.+-.+=..||.+..++..|...|.
T Consensus 36 ~tfarLc~~Vd~t~~eL~~EI~~L~~eI~~LE~iqs~aK~LRnKA~ 81 (96)
T 1t3j_A 36 TTFARLCQQVDMTQKHLEEEIARLSKEIDQLEKMQNNSKLLRNKAV 81 (96)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHH
Confidence 3467889999999999999999999988889888888776665544
No 34
>1utg_A Uteroglobin; steroid binding; 1.34A {Oryctolagus cuniculus} SCOP: a.101.1.1 PDB: 2utg_A
Probab=56.71 E-value=19 Score=23.10 Aligned_cols=44 Identities=9% Similarity=0.040 Sum_probs=34.9
Q ss_pred HHHHHHHHhccC-chhhhhHHHHHhhhccchhHHHHhHHHHHHch
Q 027525 120 SIIGNIRKQYVD-TRTQANLSKLNANRGQDLDIVIEHMYQIVERK 163 (222)
Q Consensus 120 ~~l~~~~~~yn~-~~~~dkl~~i~~~v~~vk~im~~Ni~~il~Rg 163 (222)
+..+...++|+. |.......++++-++....-=+.||.++|++-
T Consensus 19 ~~Y~~~l~~y~~~~~~~~A~~~lK~C~d~ls~e~~~~i~~~l~kI 63 (70)
T 1utg_A 19 SSYETSLKEFEPDDTMKDAGMQMKKVLDSLPQTTRENIMKLTEKI 63 (70)
T ss_dssp HHHHHHHHTTCCCHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHH
Confidence 345666778885 45567899999999999999999999998763
No 35
>3hd7_B Syntaxin-1A; membrane protein, coiled-coil, 4-helical bundle, cell juncti cytoplasmic vesicle, membrane, phosphoprotein; HET: GGG; 3.40A {Rattus norvegicus} PDB: 3hd9_B 3ipd_B
Probab=52.98 E-value=53 Score=22.83 Aligned_cols=21 Identities=19% Similarity=0.188 Sum_probs=9.6
Q ss_pred HHHHHHHHHhhcccc-CCchHHH
Q 027525 169 SEEILTATRKHVSSI-WGSPRLE 190 (222)
Q Consensus 169 L~~kt~~L~~~s~~F-~~a~kl~ 190 (222)
+..-.++|.. |..+ ++++|-+
T Consensus 65 v~~g~~eL~k-A~~yqk~~rkk~ 86 (109)
T 3hd7_B 65 VERAVSDTKK-AVKYQSKARRKK 86 (109)
T ss_dssp HHHHHHHHHH-HHHHHHHHHHHH
T ss_pred HHHHHHHHHH-HHHHHHhccCcc
Confidence 3333444443 4456 6555533
No 36
>1ccd_A Clara cell 17 KD protein; phospholipase A2 inhibitor; 3.00A {Rattus rattus} SCOP: a.101.1.1
Probab=49.52 E-value=21 Score=23.37 Aligned_cols=43 Identities=12% Similarity=0.000 Sum_probs=34.3
Q ss_pred HHHHHHHHhccC-chhhhhHHHHHhhhccchhHHHHhHHHHHHc
Q 027525 120 SIIGNIRKQYVD-TRTQANLSKLNANRGQDLDIVIEHMYQIVER 162 (222)
Q Consensus 120 ~~l~~~~~~yn~-~~~~dkl~~i~~~v~~vk~im~~Ni~~il~R 162 (222)
+..+...++|+. |.......++++-++....-=..||.++|++
T Consensus 21 ~~Y~~~l~~y~~~~~a~eA~~~lK~C~D~ls~e~r~~i~~~l~k 64 (77)
T 1ccd_A 21 SNYEAALKPFNPASDLQNAGTQLKRLVDTLPQETRINIVKLTEK 64 (77)
T ss_dssp HHHHHHHTTTCCCHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 345666778885 4556789999999999988889999998875
No 37
>2nps_B Syntaxin 13, vesicle-associated membrane protein 4; vesicle fusion, snare complex, early endosomal snare complex, VTI1A, VAMP4, transport protein; 2.50A {Rattus norvegicus}
Probab=43.52 E-value=35 Score=21.69 Aligned_cols=44 Identities=14% Similarity=0.113 Sum_probs=35.9
Q ss_pred hhHHHHHhhhccchhHHHHhHHHHHHchhchHHHHHHHHHHHhh
Q 027525 136 ANLSKLNANRGQDLDIVIEHMYQIVERKRQSEISEEILTATRKH 179 (222)
Q Consensus 136 dkl~~i~~~v~~vk~im~~Ni~~il~Rge~le~L~~kt~~L~~~ 179 (222)
+.+.+|.+.+.++.+++.+==.-+-+-|+-||.++...+.....
T Consensus 6 ~ei~~ie~~i~eL~~iF~dla~lV~eQge~id~Ie~nv~~a~~~ 49 (71)
T 2nps_B 6 TAIQQLEADILDVNQIFKDLAMMIHDQGDLIDSIEANVESSEVH 49 (71)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHH
Confidence 56888999999999998888888888999999888776655543
No 38
>1txp_A HnRNP C, heterogeneous nuclear ribonucleoprotein C protein; antiparallel four helix coiled coil tetramer HNRNPC, signaling protein; NMR {Homo sapiens}
Probab=42.41 E-value=8.5 Score=20.10 Aligned_cols=24 Identities=13% Similarity=0.122 Sum_probs=15.0
Q ss_pred HHHhhhccchhHHHHhHHHHHHchhchH
Q 027525 140 KLNANRGQDLDIVIEHMYQIVERKRQSE 167 (222)
Q Consensus 140 ~i~~~v~~vk~im~~Ni~~il~Rge~le 167 (222)
.++.++.++| +|||.+|+|=|+++
T Consensus 3 ~IkkELtQIK----~kvDsLLe~Le~~~ 26 (28)
T 1txp_A 3 AIKKELTQIK----QKVDSLLENLEKIE 26 (28)
T ss_dssp HHHHHHHHHH----HHHHHHHHHHHHSS
T ss_pred HHHHHHHHHH----HHHHHHHHHHHhhh
Confidence 3455555543 46888888776654
No 39
>1utr_A Uteroglobin; clara cell 17 kDa protein (CC10), phospholipase A2 inhibitor, clara cell phospholipid-binding protein, progesterone binding; HET: PCB; NMR {Rattus norvegicus} SCOP: a.101.1.1
Probab=42.29 E-value=28 Score=23.79 Aligned_cols=42 Identities=10% Similarity=-0.024 Sum_probs=33.8
Q ss_pred HHHHHHHhccCc-hhhhhHHHHHhhhccchhHHHHhHHHHHHc
Q 027525 121 IIGNIRKQYVDT-RTQANLSKLNANRGQDLDIVIEHMYQIVER 162 (222)
Q Consensus 121 ~l~~~~~~yn~~-~~~dkl~~i~~~v~~vk~im~~Ni~~il~R 162 (222)
..+...++||.+ ...+...++++-+++....=+.|+.++|++
T Consensus 41 ~Y~~~L~~y~~~~~a~~A~~~lK~Cvd~ls~e~r~~i~~ll~~ 83 (96)
T 1utr_A 41 NYEAALKPFNPASDLQNAGTQLKRLVDTLPQETRINIVKLTEK 83 (96)
T ss_dssp HHHHHHGGGCCCHHHHHHHHHHHHHHTTSCSHHHHHHHHHHHH
T ss_pred HHHHHHHhcCCCHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 455566689864 445789999999999999999999999875
No 40
>3v2d_S 50S ribosomal protein L18; ribosome associated inhibitor A, RAIA, protein Y, stress RES stationary phase, ribosome hibernation, ribosome; 2.70A {Thermus thermophilus} PDB: 1vsp_M 2hgj_R 2hgq_R 2hgu_R 1vsa_M 2j03_S 2jl6_S 2jl8_S 2v47_S 2v49_S 2wdi_S 2wdj_S 2wdl_S 2wdn_S 2wh2_S 2wh4_S 2wrj_S 2wrl_S 2wro_S 2wrr_S ...
Probab=42.03 E-value=49 Score=23.35 Aligned_cols=60 Identities=7% Similarity=0.046 Sum_probs=37.3
Q ss_pred EEEEEEEecCCeeeeeeccCCCC-CCCChhHHHHHHHHHHHHcCCCCCCCCceEEEEcCeEEE
Q 027525 3 KMTIVGRVSDGLPLARGPRYLNQ-EHDSFSFYKQQAEFILKEISRGALAPSKMTIRVDHHSFH 64 (222)
Q Consensus 3 ~y~~IaR~~d~~iLae~~~~~~~-~~~~~~~~~~~a~~il~~i~~~~~~~~k~s~~~~~~~~h 64 (222)
+|+.|....++.+||..++.... ..+|.+....+.+.+.++..... -....+..++|.||
T Consensus 35 iyAQiidd~~~~tlasAsT~e~~~k~~n~~AA~~vG~llA~ra~~~G--I~~vvfDrgg~~yh 95 (112)
T 3v2d_S 35 IYAQIIDDEKGVTLVSASSLALKLKGNKTEVARQVGRALAEKALALG--IKQVAFDRGPYKYH 95 (112)
T ss_dssp EEEEEEETTTTEEEEEEETTTTTCCCCHHHHHHHHHHHHHHHHHTTT--CCBCEEECTTSCSC
T ss_pred EEEEEEecCCCeEEEEEEecchhccCCCHHHHHHHHHHHHHHHHHCC--CCEEEEecCCCccc
Confidence 57888876677888876653111 13566655566666666654421 45677888888776
No 41
>1nhl_A Synaptosomal-associated protein 23; snare, coiled-coil, protein transport; 2.30A {Homo sapiens} SCOP: h.1.15.1
Probab=42.00 E-value=43 Score=20.17 Aligned_cols=40 Identities=23% Similarity=0.138 Sum_probs=31.6
Q ss_pred HHHhhhccchhHHHHhHHHHHHchhchHHHHHHHHHHHhh
Q 027525 140 KLNANRGQDLDIVIEHMYQIVERKRQSEISEEILTATRKH 179 (222)
Q Consensus 140 ~i~~~v~~vk~im~~Ni~~il~Rge~le~L~~kt~~L~~~ 179 (222)
....-++++.++-.+.+..+-+.||.|+......++....
T Consensus 4 ~~~~l~~ese~~g~~Tl~~L~~QgEql~r~~~~ld~i~~~ 43 (54)
T 1nhl_A 4 RILGLAIESQDAGIKTITMLDEQKEQLNRIEEGLDQINKD 43 (54)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhHhhHHHHHhHHHHHHhH
Confidence 3456677888889999999999999999888877766543
No 42
>3b5n_B Protein SSO1; snare complex, syntaxin, synaptobrevin, SNAP-25, SSO1P, SNC1P, SEC9P, SSO1, SNC1, coiled coil; 1.60A {Saccharomyces cerevisiae} SCOP: h.1.15.1
Probab=41.16 E-value=41 Score=21.27 Aligned_cols=44 Identities=9% Similarity=0.171 Sum_probs=36.8
Q ss_pred hhHHHHHhhhccchhHHHHhHHHHHHchhchHHHHHHHHHHHhh
Q 027525 136 ANLSKLNANRGQDLDIVIEHMYQIVERKRQSEISEEILTATRKH 179 (222)
Q Consensus 136 dkl~~i~~~v~~vk~im~~Ni~~il~Rge~le~L~~kt~~L~~~ 179 (222)
+.+.++.+.+.++.+++.+==..+.+-|+-||.++...+.-...
T Consensus 10 ~ei~~ie~~i~eL~~iF~dla~lV~eQge~id~Ie~nv~~a~~~ 53 (69)
T 3b5n_B 10 QELLKLEKSMAELTQLFNDMEELVIEQQENVDVIDKNVEDAQLD 53 (69)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHH
Confidence 56888999999999999888888899999999988877665543
No 43
>1n7s_B Syntaxin 1A; neuronal snare protein complex, four helix bundle, transport protein; 1.45A {Rattus norvegicus} SCOP: h.1.15.1 PDB: 3rk2_B 3rk3_B 3rl0_B 1kil_B
Probab=39.77 E-value=44 Score=20.99 Aligned_cols=43 Identities=9% Similarity=0.071 Sum_probs=36.2
Q ss_pred hhHHHHHhhhccchhHHHHhHHHHHHchhchHHHHHHHHHHHh
Q 027525 136 ANLSKLNANRGQDLDIVIEHMYQIVERKRQSEISEEILTATRK 178 (222)
Q Consensus 136 dkl~~i~~~v~~vk~im~~Ni~~il~Rge~le~L~~kt~~L~~ 178 (222)
+.+.++.+.+.++.+++.+==..+.+-|+-||.++...+.-..
T Consensus 12 ~ei~~Ie~~i~eL~~iF~dla~lV~eQge~id~Ie~nv~~a~~ 54 (68)
T 1n7s_B 12 SEIIKLENSIRELHDMFMDMAMLVESQGEMIDRIEYNVEHAVD 54 (68)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHH
Confidence 5688899999999999988888888999999998887765544
No 44
>1gl2_B Syntaxin 7; membrane protein, membrane fusion protein complex, coiled coil, transmembrane; 1.9A {Mus musculus} SCOP: h.1.15.1
Probab=39.49 E-value=46 Score=20.76 Aligned_cols=44 Identities=16% Similarity=0.116 Sum_probs=36.1
Q ss_pred hhHHHHHhhhccchhHHHHhHHHHHHchhchHHHHHHHHHHHhh
Q 027525 136 ANLSKLNANRGQDLDIVIEHMYQIVERKRQSEISEEILTATRKH 179 (222)
Q Consensus 136 dkl~~i~~~v~~vk~im~~Ni~~il~Rge~le~L~~kt~~L~~~ 179 (222)
..+.++.+.+.++.+++.+==.-+-+-|+.||.++...+.-...
T Consensus 9 ~~i~~ie~~i~eL~~iF~dla~lV~eQge~id~Ie~nv~~a~~~ 52 (65)
T 1gl2_B 9 SSIRQLEADIMDINEIFKDLGMMIHEQGDVIDSIEANVESAEVH 52 (65)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 56888999999999998888888888999999988877665543
No 45
>1jth_B Syntaxin 1A; coiled-coil, polar layer, endocytosis-exocytosis complex; 2.00A {Rattus norvegicus} SCOP: h.1.15.1 PDB: 1hvv_A* 1urq_B
Probab=38.24 E-value=46 Score=21.45 Aligned_cols=43 Identities=9% Similarity=0.071 Sum_probs=34.6
Q ss_pred hhHHHHHhhhccchhHHHHhHHHHHHchhchHHHHHHHHHHHh
Q 027525 136 ANLSKLNANRGQDLDIVIEHMYQIVERKRQSEISEEILTATRK 178 (222)
Q Consensus 136 dkl~~i~~~v~~vk~im~~Ni~~il~Rge~le~L~~kt~~L~~ 178 (222)
+.+.++++.+.++.+++.+==..+.+-|+-||.++...+.-..
T Consensus 10 ~ei~~ie~~i~eL~~iF~dla~lV~eQge~id~Ie~nv~~a~~ 52 (77)
T 1jth_B 10 SEIIKLENSIRELHDMFMDMAMLVESQGEMIDRIEYNVEHAVD 52 (77)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHH
Confidence 5688899999999999888888888899988887766554443
No 46
>1l4a_C S-SNAP25 fusion protein; snare, snare complex, membrane fusion, neurotransmission, endocytosis/exocytosis complex; 2.95A {Loligo pealei} SCOP: h.1.15.1
Probab=37.47 E-value=50 Score=21.95 Aligned_cols=50 Identities=12% Similarity=0.090 Sum_probs=42.1
Q ss_pred hhhhhHHHHHhhhccchhHHHHhHHHHHHchhchHHHHHHHHHHHhhccc
Q 027525 133 RTQANLSKLNANRGQDLDIVIEHMYQIVERKRQSEISEEILTATRKHVSS 182 (222)
Q Consensus 133 ~~~dkl~~i~~~v~~vk~im~~Ni~~il~Rge~le~L~~kt~~L~~~s~~ 182 (222)
.+.+.....-.-+++.+.+...++..+.+-||+|+......+.+...-..
T Consensus 24 esl~STrr~l~l~~es~~~g~~Tl~~L~~QgEQL~rie~~ld~I~~dl~~ 73 (83)
T 1l4a_C 24 DSLESTRRMLNMCEESKEAGIRTLVMLDEQGEQLDRIEEGLDQINQDMKD 73 (83)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHS
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33567778888889999999999999999999999999998888765443
No 47
>1n7s_A Vesicle-associated membrane protein 2; neuronal snare protein complex, four helix bundle, transport protein; 1.45A {Rattus norvegicus} SCOP: h.1.15.1 PDB: 1kil_A 3rk2_A 3rk3_A 3rl0_A 3fii_B 3g94_B
Probab=36.96 E-value=33 Score=21.27 Aligned_cols=49 Identities=14% Similarity=0.067 Sum_probs=27.1
Q ss_pred hccchhHHHHhHHHHHHchhchHHHHHHHHHHHhhcccc-CCchHHHHHH
Q 027525 145 RGQDLDIVIEHMYQIVERKRQSEISEEILTATRKHVSSI-WGSPRLEVIA 193 (222)
Q Consensus 145 v~~vk~im~~Ni~~il~Rge~le~L~~kt~~L~~~s~~F-~~a~kl~r~~ 193 (222)
+..++.-+.+..+-+.++-+++-.=.++-+.|.+-|... ..|...++..
T Consensus 6 l~~v~~~l~ev~~iM~~NI~~vl~RGekLd~L~~ks~~L~~~s~~F~~~a 55 (63)
T 1n7s_A 6 LQQTQAQVDEVVDIMRVNVDKVLERDQKLSELDDRADALQAGASQFETSA 55 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 444555555555555555555555555555566666666 5555555544
No 48
>1n7s_C SNAP-25A; neuronal snare protein complex, four helix bundle, transport protein; 1.45A {Rattus norvegicus} SCOP: h.1.15.1 PDB: 1sfc_C 1urq_C 3hd7_C* 3hd9_C 3ipd_C 3rk2_C 3rk3_C 3rl0_C 1kil_C 1jth_A
Probab=36.83 E-value=62 Score=21.15 Aligned_cols=47 Identities=13% Similarity=0.092 Sum_probs=39.9
Q ss_pred hhhhhHHHHHhhhccchhHHHHhHHHHHHchhchHHHHHHHHHHHhh
Q 027525 133 RTQANLSKLNANRGQDLDIVIEHMYQIVERKRQSEISEEILTATRKH 179 (222)
Q Consensus 133 ~~~dkl~~i~~~v~~vk~im~~Ni~~il~Rge~le~L~~kt~~L~~~ 179 (222)
++.+.+.....-+.++.++-.+.+..+-+.||.|+......++....
T Consensus 20 ~s~~s~~~~l~~a~Ete~~G~~Tl~~L~~Q~Eql~r~~~~ld~i~~~ 66 (79)
T 1n7s_C 20 ESLESTRRMLQLVEESKDAGIRTLVMLDEQGEQLDRVEEGMNHINQD 66 (79)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHhHHHHHHhH
Confidence 33578888899999999999999999999999999888887766554
No 49
>3b5n_A Synaptobrevin homolog 1; snare complex, syntaxin, synaptobrevin, SNAP-25, SSO1P, SNC1P, SEC9P, SSO1, SNC1, coiled coil; 1.60A {Saccharomyces cerevisiae} SCOP: h.1.15.1
Probab=35.05 E-value=38 Score=20.91 Aligned_cols=49 Identities=8% Similarity=0.003 Sum_probs=26.0
Q ss_pred hccchhHHHHhHHHHHHchhchHHHHHHHHHHHhhcccc-CCchHHHHHH
Q 027525 145 RGQDLDIVIEHMYQIVERKRQSEISEEILTATRKHVSSI-WGSPRLEVIA 193 (222)
Q Consensus 145 v~~vk~im~~Ni~~il~Rge~le~L~~kt~~L~~~s~~F-~~a~kl~r~~ 193 (222)
+..++.-+.+..+-+.++-+++=.=.++-+.|.+.|... ..|...++..
T Consensus 4 l~~vq~~l~evk~iM~~NI~~vl~RgekLd~L~~ks~~L~~~s~~F~~~a 53 (61)
T 3b5n_A 4 TAELQAEIDDTVGIMRDNINKVAERGERLTSIEDKADNLAVSAQGFKRGA 53 (61)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444445555555555555555555555566666 5555555544
No 50
>1urq_A M-tomosyn isoform; transport protein, tomosyn-snare complex, exocytosis, four helical bundle, coiled coil; 2.0A {Rattus norvegicus} SCOP: h.1.15.1
Probab=34.90 E-value=32 Score=21.60 Aligned_cols=44 Identities=9% Similarity=0.010 Sum_probs=20.6
Q ss_pred HHHHhhhccchhHHHHhHHHHHHchhchHHHHHHHHHHHhhccc
Q 027525 139 SKLNANRGQDLDIVIEHMYQIVERKRQSEISEEILTATRKHVSS 182 (222)
Q Consensus 139 ~~i~~~v~~vk~im~~Ni~~il~Rge~le~L~~kt~~L~~~s~~ 182 (222)
..+...+.+-.+-+.+.-+++=+=.++-+.|.+.++..+.+|..
T Consensus 14 ~ev~~iM~~ni~kvlERGekL~~L~dkT~~L~~~A~~F~~~A~~ 57 (63)
T 1urq_A 14 SGVVGELARARLALDERGQKLSDLEERTAAMMSSADSFSKHAHE 57 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33334444444444444444444455555555555555554443
No 51
>1lgh_A LH II, B800/850, light harvesting complex II; bacteriochlorophyll, dexter energy transfer, foerster exciton transfer mechanism; HET: BCL LYC DET HTO; 2.40A {Phaeospirillum molischianum} SCOP: f.3.1.1
Probab=33.26 E-value=42 Score=20.64 Aligned_cols=25 Identities=4% Similarity=-0.058 Sum_probs=11.9
Q ss_pred hhhHHHHHHHHHHHHHHHHH--hcCCc
Q 027525 195 KWTPIAIIVAVAAILLWANL--VLTDE 219 (222)
Q Consensus 195 K~~~i~~~~~~~~~~i~~~~--~~~~~ 219 (222)
+-...+.++.++++.+..+| .+++.
T Consensus 16 ~~~L~~l~~~v~vlAllIH~~lLs~~~ 42 (56)
T 1lgh_A 16 STWLPVIWIVATVVAIAVHAAVLAAPG 42 (56)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHSGG
T ss_pred ceeHHHHHHHHHHHHHHHHHHHHcCCC
Confidence 33444444444444566666 44443
No 52
>3lcn_C MRNA transport factor GFD1; nuclear mRNA export, metal-binding, nucleus, RNA-binding, ZI finger, membrane, nuclear pore complex; 2.00A {Saccharomyces cerevisiae}
Probab=32.88 E-value=24 Score=18.35 Aligned_cols=21 Identities=10% Similarity=0.199 Sum_probs=17.7
Q ss_pred hhhHHHHHhhhccchhHHHHh
Q 027525 135 QANLSKLNANRGQDLDIVIEH 155 (222)
Q Consensus 135 ~dkl~~i~~~v~~vk~im~~N 155 (222)
.+|+.-++..++|-+.|..++
T Consensus 5 ~sKm~lLKKKIEEQr~i~~~~ 25 (29)
T 3lcn_C 5 ASKMKLLKKKIEEQREILQKT 25 (29)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHh
Confidence 478889999999999987765
No 53
>1sfc_A VAMP 2, protein (synaptobrevin 2); membrane fusion protein complex, transport protein; 2.40A {Rattus norvegicus} SCOP: h.1.15.1
Probab=30.58 E-value=51 Score=22.45 Aligned_cols=52 Identities=15% Similarity=0.086 Sum_probs=31.2
Q ss_pred HhhhccchhHHHHhHHHHHHchhchHHHHHHHHHHHhhcccc-CCchHHHHHH
Q 027525 142 NANRGQDLDIVIEHMYQIVERKRQSEISEEILTATRKHVSSI-WGSPRLEVIA 193 (222)
Q Consensus 142 ~~~v~~vk~im~~Ni~~il~Rge~le~L~~kt~~L~~~s~~F-~~a~kl~r~~ 193 (222)
...+..++.-+.+..+.+.++-+++-+=.++-+.|.+.|... ..|...++..
T Consensus 29 ~d~l~~vq~eldeVk~IM~~NI~kvLeRGEkLd~L~dkse~L~~~S~~F~k~A 81 (96)
T 1sfc_A 29 NRRLQQTQAQVDEVVDIMRVNVDKVLERDQKLSELDDRADALQAGASQFETSA 81 (96)
T ss_dssp SHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344555555555556666666666666666666666666666 6666666554
No 54
>3r8s_O 50S ribosomal protein L18; protein biosynthesis, RNA, tRNA, transfer RNA, 23S ribosomal subunit, ribosome recycling factor, RRF, ribosome; 3.00A {Escherichia coli} PDB: 3fik_O 3j19_O 2wwq_O 3oat_O* 3oas_O* 3ofd_O 3ofc_O 3ofr_O* 3ofz_O* 3og0_O 3ofq_O 3r8t_O 3i1n_O 1p85_M 1p86_M 1vs8_O 1vs6_O 2aw4_O 2awb_O 1vt2_O ...
Probab=29.27 E-value=52 Score=23.29 Aligned_cols=60 Identities=5% Similarity=-0.048 Sum_probs=36.2
Q ss_pred EEEEEEEecCCeeeeeeccCCC------CCCCChhHHHHHHHHHHHHcCCCCCCCCceEEEEcCeEEE
Q 027525 3 KMTIVGRVSDGLPLARGPRYLN------QEHDSFSFYKQQAEFILKEISRGALAPSKMTIRVDHHSFH 64 (222)
Q Consensus 3 ~y~~IaR~~d~~iLae~~~~~~------~~~~~~~~~~~~a~~il~~i~~~~~~~~k~s~~~~~~~~h 64 (222)
+|+.|.-..++.+||..++... ...+|.+....+.+.+.++..... -+...+..++|.||
T Consensus 34 IyAQiidd~~g~tlasAST~e~~~~~~~~~~~n~~AA~~vG~llA~Ral~~G--I~~vvfDrgg~~yh 99 (116)
T 3r8s_O 34 IYAQVIAPNGSEVLVAASTVEKAIAEQLKYTGNKDAAAAVGKAVAERALEKG--IKDVSFDRSGFQYH 99 (116)
T ss_dssp EEEEEECTTSSCEEEECCSSSHHHHTTCSCSSSHHHHHHHHHHHHHHHHTTT--CCCCEEECTTSCSS
T ss_pred EEEEEEEcCCCeEEEEEeeCchhhccccCCCCCHHHHHHHHHHHHHHHHHCC--CCEEEEecCCCccc
Confidence 5778887556778876654310 124566655566666666654421 45667777777765
No 55
>2dw3_A Intrinsic membrane protein PUFX; quinone exchange, photosynthesis, light- harvesting, GXXXG motif, dimerization; NMR {Rhodobacter sphaeroides} PDB: 2ita_A
Probab=26.49 E-value=1.3e+02 Score=19.63 Aligned_cols=21 Identities=10% Similarity=-0.111 Sum_probs=12.2
Q ss_pred cc-CCchHHHHHHH---hhhHHHHH
Q 027525 182 SI-WGSPRLEVIAL---KWTPIAII 202 (222)
Q Consensus 182 ~F-~~a~kl~r~~w---K~~~i~~~ 202 (222)
++ .++.+.+=+.| .+..=.++
T Consensus 8 dyL~~~~k~rLr~~i~~qMlkGAg~ 32 (77)
T 2dw3_A 8 DHLNTNPKTNLRLWVAFQMMKGAGW 32 (77)
T ss_dssp CSCCCCHHHHHHHHHHHHHHHHHHH
T ss_pred HHhccCcchhHHHHHHHHHHhcccH
Confidence 45 66777776777 44443443
No 56
>1sfc_B Protein (syntaxin 1A), protein (synaptobrevin 2); membrane fusion protein complex, transport protein; 2.40A {Rattus norvegicus} SCOP: h.1.15.1 PDB: 1l4a_B
Probab=26.31 E-value=94 Score=20.28 Aligned_cols=43 Identities=9% Similarity=0.071 Sum_probs=35.4
Q ss_pred hhHHHHHhhhccchhHHHHhHHHHHHchhchHHHHHHHHHHHh
Q 027525 136 ANLSKLNANRGQDLDIVIEHMYQIVERKRQSEISEEILTATRK 178 (222)
Q Consensus 136 dkl~~i~~~v~~vk~im~~Ni~~il~Rge~le~L~~kt~~L~~ 178 (222)
..+.++.+.+.++.+++.+==.-+-+-|+-||.++...+.-..
T Consensus 21 ~ei~~ie~~i~eL~~iF~dla~lV~eQge~id~Ie~nv~~a~~ 63 (83)
T 1sfc_B 21 SEIIKLENSIRELHDMFMDMAMLVESQGEMIDRIEYNVEHAVD 63 (83)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHH
Confidence 5588899999999999888888888999999988777665444
No 57
>2akf_A Coronin-1A; coiled coil, protein binding; 1.20A {Synthetic}
Probab=26.22 E-value=36 Score=17.93 Aligned_cols=15 Identities=20% Similarity=0.191 Sum_probs=7.3
Q ss_pred HHHHHHchhchHHHH
Q 027525 156 MYQIVERKRQSEISE 170 (222)
Q Consensus 156 i~~il~Rge~le~L~ 170 (222)
++++-+|-++||+-+
T Consensus 15 vq~lq~r~drle~tv 29 (32)
T 2akf_A 15 VQKLQERLDRLEETV 29 (32)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH
Confidence 344445555555443
No 58
>1zkr_A Major allergen I polypeptide, fused chain 1, CHAI; CAT allergen, uteroglobin, secretoglobin; 1.64A {Felis catus} SCOP: a.101.1.1 a.101.1.1 PDB: 2ejn_A
Probab=25.40 E-value=88 Score=23.31 Aligned_cols=43 Identities=12% Similarity=0.006 Sum_probs=32.5
Q ss_pred HHHHHHHhccC-chhhhhHHHHHhhhc-cchhHHHHhHHHHHHch
Q 027525 121 IIGNIRKQYVD-TRTQANLSKLNANRG-QDLDIVIEHMYQIVERK 163 (222)
Q Consensus 121 ~l~~~~~~yn~-~~~~dkl~~i~~~v~-~vk~im~~Ni~~il~Rg 163 (222)
..+...++|+. |.......++++-++ ....-=..||.++|++-
T Consensus 21 eYk~~LkkYn~~pealeA~~eLKqCvD~~LS~Etr~nI~klLekI 65 (153)
T 1zkr_A 21 EYVEQVAQYKALPVVLENARILKNCVDAKMTEEDKENALSLLDKI 65 (153)
T ss_dssp HHHHHHHHHCCCHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHhcCCCHHHHHHHHHHHhcccccCCHHHHHHHHHHHHHH
Confidence 45566678875 455578899999999 88788888888888753
No 59
>1l4a_A Synaptobrevin; snare, snare complex, membrane fusion, neurotransmission, endocytosis/exocytosis complex; 2.95A {Loligo pealei} SCOP: h.1.15.1
Probab=24.89 E-value=51 Score=21.52 Aligned_cols=51 Identities=12% Similarity=0.054 Sum_probs=35.9
Q ss_pred hhhccchhHHHHhHHHHHHchhchHHHHHHHHHHHhhcccc-CCchHHHHHH
Q 027525 143 ANRGQDLDIVIEHMYQIVERKRQSEISEEILTATRKHVSSI-WGSPRLEVIA 193 (222)
Q Consensus 143 ~~v~~vk~im~~Ni~~il~Rge~le~L~~kt~~L~~~s~~F-~~a~kl~r~~ 193 (222)
..+..++.-+.+..+.+.++-+++-+=.++-+.|.+.|... ..|...++..
T Consensus 15 d~l~~vq~el~ev~~iM~~NI~~vLeRGekLd~L~~kt~~L~~~s~~F~k~A 66 (80)
T 1l4a_A 15 KRLQQTQAQVEEVVDIMRVNVDKVLERDSKISELDDRADALQAGASQFEASA 66 (80)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTTTSTTTTHHH
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45566666666777777777777777777777777777777 7777666655
No 60
>3t12_B Gliding protein MGLB; G-domain containing protein, bacterial polarity, motility, homodimeric GAP protein, POLE localisation; HET: GDP; 2.20A {Thermus thermophilus} PDB: 3t1q_B*
Probab=24.74 E-value=2e+02 Score=20.74 Aligned_cols=84 Identities=8% Similarity=0.025 Sum_probs=48.0
Q ss_pred EEEEecCCeeeeeecc---C-CCC-------CCCChhHHHHHHHHHHHHcCCCCCCCCceEEEEcCeEEEEE-eeCCcEE
Q 027525 6 IVGRVSDGLPLARGPR---Y-LNQ-------EHDSFSFYKQQAEFILKEISRGALAPSKMTIRVDHHSFHYL-MENGIGC 73 (222)
Q Consensus 6 ~IaR~~d~~iLae~~~---~-~~~-------~~~~~~~~~~~a~~il~~i~~~~~~~~k~s~~~~~~~~h~l-~~~~~~~ 73 (222)
+|.| ||.++++... . +.+ ..++|. .++.+.+.+..+. -+...++.++..+|+. ..++ ..
T Consensus 31 lvd~--dG~vIa~~~~~~~~~~~d~~~lAAl~A~~~~----a~~~la~~Lge~~--~~~l~~eGe~~~i~i~~vg~~-~i 101 (136)
T 3t12_B 31 LIDR--KGFVLAHKEALWAPKPPPLDTLATLVASNAA----ATQALAKLLGEAR--FQEEVHQGERMGLYVDEAGEH-AL 101 (136)
T ss_dssp EEET--TC-CCEEEECTTSCCCSCHHHHHHHHHHHHH----HHHHHHHHTTCSC--CCCEEEECSSCEEEEEESSTT-EE
T ss_pred EEcC--CCCEEEEeccccCCCCCcHHHHHHHHHHHHH----HHHHHHHHHCCCc--hhHheEEcCcCCEEEEEcCCC-EE
Confidence 4556 9999998743 2 101 123333 3556666666542 3444555556666654 4566 88
Q ss_pred EEEEeCCCCChHHHHHHHHHHHHHH
Q 027525 74 FITLCDSSYPRKLAFHYLQDLQKEF 98 (222)
Q Consensus 74 ~~cvtd~~~p~~~af~fL~ei~~~F 98 (222)
.++++|++.|--...-++++-.++.
T Consensus 102 Lvvifd~~~~LG~Vrl~~kka~~~l 126 (136)
T 3t12_B 102 LVLVFDETAPLGKVKLHGKAAAAAL 126 (136)
T ss_dssp EEEEECTTSCHHHHHHHHHHHHHHH
T ss_pred EEEEeCCCCCceEeeehHHHHHHHH
Confidence 8899999988655554554444433
No 61
>2ygg_A Sodium/hydrogen exchanger 1; metal binding protein-transport protein complex; HET: TAM; 2.23A {Homo sapiens}
Probab=23.09 E-value=43 Score=21.58 Aligned_cols=22 Identities=9% Similarity=0.107 Sum_probs=18.7
Q ss_pred HhhhccchhHHHHhHHHHHHch
Q 027525 142 NANRGQDLDIVIEHMYQIVERK 163 (222)
Q Consensus 142 ~~~v~~vk~im~~Ni~~il~Rg 163 (222)
..+++++++|+..|+.++=+|.
T Consensus 6 ~~~~e~ir~IL~~NLykiRqr~ 27 (70)
T 2ygg_A 6 KDKEEEIRKILRNNLQKTRQRL 27 (70)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHhc
Confidence 4678899999999999998774
No 62
>3h3g_B Parathyroid hormone-related protein; GPCR, extracellular domain, PTHRP, PTH, PThr1, sugar transpo transport, membrane protein; HET: MAL; 1.94A {Escherichia coli}
Probab=23.06 E-value=41 Score=16.89 Aligned_cols=8 Identities=13% Similarity=-0.031 Sum_probs=7.0
Q ss_pred hHHHHHHH
Q 027525 187 PRLEVIAL 194 (222)
Q Consensus 187 ~kl~r~~w 194 (222)
..+||+||
T Consensus 5 Q~~rRr~w 12 (24)
T 3h3g_B 5 QDLRRRFF 12 (26)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 67899999
No 63
>1j3w_A Giding PROTEIN-MGLB; gliding, motility, mutational function, riken structur genomics/proteomics initiative, RSGI, structural genomics; HET: MES; 1.50A {Thermus thermophilus} SCOP: d.110.7.1 PDB: 3t1r_A 3t1s_A 3t1x_A
Probab=22.57 E-value=2.4e+02 Score=20.89 Aligned_cols=83 Identities=10% Similarity=0.093 Sum_probs=49.2
Q ss_pred EEEEecCCeeeee-----eccCCCCCCCChhH-------HHHHHHHHHHHcCCCCCCCCceEEEEc-CeEEEEEeeCCcE
Q 027525 6 IVGRVSDGLPLAR-----GPRYLNQEHDSFSF-------YKQQAEFILKEISRGALAPSKMTIRVD-HHSFHYLMENGIG 72 (222)
Q Consensus 6 ~IaR~~d~~iLae-----~~~~~~~~~~~~~~-------~~~~a~~il~~i~~~~~~~~k~s~~~~-~~~~h~l~~~~~~ 72 (222)
++.+ ||++++. +... . +.+. .-..++.+.+.+..+. -....++.+ +|.|-.-..++ .
T Consensus 34 lvs~--DGl~ia~~~~~~~~~~----~-d~d~lAA~~A~~~sl~~~~a~~l~~G~--~~q~~ve~~~g~l~v~~~g~~-a 103 (163)
T 1j3w_A 34 LIDR--KGFVLAHKEALWAPKP----P-PLDTLATLVAGNAAATQALAKLLGEAR--FQEEVHQGERMGLYVDEAGEH-A 103 (163)
T ss_dssp EEET--TSCEEEEEECTTSCCC----S-CHHHHHHHHHHHHHHTHHHHHHTTCSS--CSEEEEECSSCEEEEEESSTT-E
T ss_pred EEcC--CCCEEEeecccccCCC----C-cHHHHHHHHHHHHHHHHHHHHHhCCCC--ceEEEEEeCCcEEEEEEeCCC-e
Confidence 3445 9999998 4331 1 3321 1234555556666552 334455555 45555556778 8
Q ss_pred EEEEEeCCCCChHHHHHHHHHHHHHH
Q 027525 73 CFITLCDSSYPRKLAFHYLQDLQKEF 98 (222)
Q Consensus 73 ~~~cvtd~~~p~~~af~fL~ei~~~F 98 (222)
+.+++++++.+--...-.+.+...+.
T Consensus 104 ~L~Vla~~~a~lG~v~~~m~~~v~~l 129 (163)
T 1j3w_A 104 LLVLVFDETAPLGKVKLHGKRASEAL 129 (163)
T ss_dssp EEEEEECTTSCHHHHHHHHHHHHHHH
T ss_pred EEEEEeCCCCChHHHHHHHHHHHHHH
Confidence 88889999998766555555555444
No 64
>3b5n_C Protein transport protein SEC9; snare complex, syntaxin, synaptobrevin, SNAP-25, SSO1P, SNC1P, SEC9P, SSO1, SNC1, coiled coil; 1.60A {Saccharomyces cerevisiae} SCOP: h.1.15.1
Probab=21.87 E-value=1.2e+02 Score=19.38 Aligned_cols=55 Identities=9% Similarity=-0.086 Sum_probs=39.2
Q ss_pred hhhHHHHHhhhccchhHHHHhHHHHHHchhchHHHHHHHHHHHhhcccc-CCchHH
Q 027525 135 QANLSKLNANRGQDLDIVIEHMYQIVERKRQSEISEEILTATRKHVSSI-WGSPRL 189 (222)
Q Consensus 135 ~dkl~~i~~~v~~vk~im~~Ni~~il~Rge~le~L~~kt~~L~~~s~~F-~~a~kl 189 (222)
.+.....-.-.++..++=..++..+-+-||+|+..+...+.+..+.+.= +..+.|
T Consensus 11 l~STrr~L~~a~e~e~~g~~Tl~~L~~QgEqL~rtE~~ld~i~~~~k~aek~l~~L 66 (70)
T 3b5n_C 11 VASTRNTLKMAQDAERAGMNTLGMLGHQSEQLNNVEGNLDLMKVQNKVADEKVAEL 66 (70)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3445555666677777888888999999999998888888777765544 443333
No 65
>2pjw_V Vacuolar protein sorting-associated protein 27; GAT domain, core complex, doamin SWAP, endocytosis/exocytosis complex; 3.01A {Saccharomyces cerevisiae}
Probab=21.43 E-value=1.9e+02 Score=19.41 Aligned_cols=58 Identities=7% Similarity=0.064 Sum_probs=40.5
Q ss_pred cchHHHHHHHHhcc-CchhhhhHHHHHhhhccchhHHHHhHHHHHHchhchHHHHHHHH
Q 027525 117 KFESIIGNIRKQYV-DTRTQANLSKLNANRGQDLDIVIEHMYQIVERKRQSEISEEILT 174 (222)
Q Consensus 117 ~f~~~l~~~~~~yn-~~~~~dkl~~i~~~v~~vk~im~~Ni~~il~Rge~le~L~~kt~ 174 (222)
-|...+.++...-. +.....++..+-.++...+.-|..++++-.++-+.+-++-+|-.
T Consensus 13 lF~~lv~~~k~~~~~~i~~d~~LqeLy~kv~~lRPKL~r~l~~~~~K~~~L~~mn~Kls 71 (91)
T 2pjw_V 13 MFASLVEKMKSRPLNEILEDSKLQNLAQRVFASKARLNYALNDKAQKYNTLIEMNGKIS 71 (91)
T ss_dssp HHHHHHHHHHTCSCSTTTTTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCcccccCCHHHHHHHHHHHhHhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45554444443211 11223689999999999999999999999998887777766643
No 66
>3leq_A Uncharacterized protein CVNB5; PSI, MCSG, structural genomics, midwest center for structura genomics, protein structure initiative; 1.85A {Streptomyces avermitilis}
Probab=20.94 E-value=2.2e+02 Score=19.92 Aligned_cols=46 Identities=11% Similarity=0.047 Sum_probs=28.9
Q ss_pred CceEEEEc-CeEEEEEeeCCcEEEEEEeCCCCChHHHHHHHHHHHHHH
Q 027525 52 SKMTIRVD-HHSFHYLMENGIGCFITLCDSSYPRKLAFHYLQDLQKEF 98 (222)
Q Consensus 52 ~k~s~~~~-~~~~h~l~~~~~~~~~cvtd~~~p~~~af~fL~ei~~~F 98 (222)
....++.+ +|.|-+-..++ .+..++++++.+--....=+.+...+.
T Consensus 70 ~qv~ve~~~G~l~v~~ag~~-a~L~vla~~~a~lG~v~~em~~~v~ri 116 (126)
T 3leq_A 70 RQALIEMGKGYLILTAAGPG-AHLVVLTRQGADVGVVAYQMNMLVKKI 116 (126)
T ss_dssp CEEEEECSSCEEEEEESSTT-EEEEEEECTTCCHHHHHHHHHHHHHHC
T ss_pred EEEEEEeCCCEEEEEEeCCC-cEEEEEeCCCCCHHHHHHHHHHHHHHH
Confidence 34455655 56666666677 777788899888766544444444443
No 67
>3din_D Preprotein translocase subunit SECE; protein translocation, membrane protein, ATPase, ATP-binding membrane, nucleotide-binding, protein transport; HET: ADP; 4.50A {Thermotoga maritima MSB8}
Probab=20.57 E-value=1.2e+02 Score=18.92 Aligned_cols=14 Identities=7% Similarity=-0.068 Sum_probs=6.7
Q ss_pred ccc-CCchH-HHHHHH
Q 027525 181 SSI-WGSPR-LEVIAL 194 (222)
Q Consensus 181 ~~F-~~a~k-l~r~~w 194 (222)
..| ++++. +|+-.|
T Consensus 5 ~~f~~~v~~ElkKV~W 20 (65)
T 3din_D 5 RKFFREVIAEAKKISW 20 (65)
T ss_dssp -----CHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcccC
Confidence 467 88744 666668
No 68
>1pd7_B MAD1; PAH2, SIN3, eukaryotic transcriptional regulation, protein-protein interactions; NMR {Mus musculus}
Probab=20.10 E-value=58 Score=16.62 Aligned_cols=21 Identities=14% Similarity=0.052 Sum_probs=16.2
Q ss_pred HhHHHHHHchhchHHHHHHHH
Q 027525 154 EHMYQIVERKRQSEISEEILT 174 (222)
Q Consensus 154 ~Ni~~il~Rge~le~L~~kt~ 174 (222)
.||+.+|+-.+=||..+.+++
T Consensus 3 ~nvq~LLeAAeyLErrEre~E 23 (26)
T 1pd7_B 3 MNIQMLLEAADYLERREREAE 23 (26)
T ss_dssp CSTHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHhhh
Confidence 378888888888887777654
Done!