Query 027527
Match_columns 222
No_of_seqs 144 out of 1273
Neff 6.4
Searched_HMMs 46136
Date Fri Mar 29 11:15:44 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/027527.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/027527hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 cd02970 PRX_like2 Peroxiredoxi 99.9 3.1E-26 6.6E-31 181.3 12.1 136 74-221 1-136 (149)
2 COG1225 Bcp Peroxiredoxin [Pos 99.9 5.7E-22 1.2E-26 162.3 12.0 106 68-174 3-108 (157)
3 KOG4498 Uncharacterized conser 99.9 1.4E-22 3E-27 168.6 5.6 159 49-221 8-166 (197)
4 PF00578 AhpC-TSA: AhpC/TSA fa 99.9 6E-21 1.3E-25 146.8 12.2 103 71-174 1-103 (124)
5 cd03018 PRX_AhpE_like Peroxire 99.8 5E-20 1.1E-24 146.5 11.5 104 70-173 2-107 (149)
6 cd03013 PRX5_like Peroxiredoxi 99.8 7.3E-20 1.6E-24 149.2 9.7 104 71-174 1-111 (155)
7 cd03017 PRX_BCP Peroxiredoxin 99.8 5.7E-19 1.2E-23 138.8 11.3 101 73-174 1-101 (140)
8 PF08534 Redoxin: Redoxin; In 99.8 7.8E-19 1.7E-23 139.6 11.7 101 70-172 1-104 (146)
9 PRK09437 bcp thioredoxin-depen 99.8 9.3E-19 2E-23 140.8 12.0 106 67-173 2-107 (154)
10 cd03016 PRX_1cys Peroxiredoxin 99.8 5.3E-19 1.1E-23 149.9 10.7 102 71-173 1-108 (203)
11 cd02971 PRX_family Peroxiredox 99.8 1.7E-18 3.7E-23 135.9 11.2 101 74-175 1-102 (140)
12 TIGR03137 AhpC peroxiredoxin. 99.8 1.1E-18 2.4E-23 146.1 10.3 102 70-172 3-111 (187)
13 PRK13599 putative peroxiredoxi 99.8 1.8E-18 3.9E-23 148.4 10.8 102 70-172 3-110 (215)
14 PRK13190 putative peroxiredoxi 99.8 2E-18 4.3E-23 146.5 10.7 102 69-172 2-109 (202)
15 PF13911 AhpC-TSA_2: AhpC/TSA 99.8 3.5E-18 7.5E-23 131.9 10.5 99 119-221 2-101 (115)
16 PRK13191 putative peroxiredoxi 99.8 3.3E-18 7.3E-23 146.7 11.0 103 69-172 7-115 (215)
17 PTZ00137 2-Cys peroxiredoxin; 99.8 3.4E-18 7.5E-23 150.6 11.2 109 65-173 64-182 (261)
18 cd03015 PRX_Typ2cys Peroxiredo 99.8 6.7E-18 1.4E-22 139.1 11.4 101 71-172 1-112 (173)
19 PRK13189 peroxiredoxin; Provis 99.8 6.2E-18 1.4E-22 145.6 11.5 103 69-172 9-117 (222)
20 PRK00522 tpx lipid hydroperoxi 99.7 1.3E-17 2.7E-22 137.3 11.1 102 69-174 18-122 (167)
21 cd03014 PRX_Atyp2cys Peroxired 99.7 1.4E-17 3.1E-22 132.0 10.7 101 70-173 1-103 (143)
22 PTZ00056 glutathione peroxidas 99.7 1.5E-17 3.2E-22 141.0 10.5 90 69-160 13-110 (199)
23 PRK10382 alkyl hydroperoxide r 99.7 2.4E-17 5.1E-22 138.7 11.0 102 70-172 3-111 (187)
24 cd02969 PRX_like1 Peroxiredoxi 99.7 4.7E-17 1E-21 133.3 10.9 107 72-179 1-115 (171)
25 KOG0855 Alkyl hydroperoxide re 99.7 2.1E-17 4.4E-22 135.9 8.0 113 67-179 61-173 (211)
26 cd00340 GSH_Peroxidase Glutath 99.7 2.2E-17 4.8E-22 133.3 7.9 84 75-161 2-94 (152)
27 PRK15000 peroxidase; Provision 99.7 6.6E-17 1.4E-21 137.2 11.0 103 70-172 3-117 (200)
28 PTZ00256 glutathione peroxidas 99.7 7.1E-17 1.5E-21 134.6 9.9 90 70-160 15-113 (183)
29 PRK03147 thiol-disulfide oxido 99.7 2E-16 4.4E-21 128.6 12.2 112 66-179 32-144 (173)
30 TIGR02661 MauD methylamine deh 99.7 3.4E-16 7.4E-21 131.3 12.9 109 67-179 44-152 (189)
31 PLN02412 probable glutathione 99.7 1.8E-16 3.9E-21 130.5 8.9 87 72-160 6-101 (167)
32 PLN02399 phospholipid hydroper 99.7 5.1E-16 1.1E-20 135.1 12.1 90 69-160 73-171 (236)
33 cd03012 TlpA_like_DipZ_like Tl 99.7 2.3E-16 4.9E-21 123.2 8.6 93 85-179 13-111 (126)
34 PTZ00253 tryparedoxin peroxida 99.7 3.6E-16 7.8E-21 132.0 10.5 105 67-172 4-119 (199)
35 PRK15412 thiol:disulfide inter 99.7 8.4E-16 1.8E-20 128.3 11.1 107 68-179 38-148 (185)
36 TIGR02540 gpx7 putative glutat 99.6 3.5E-16 7.7E-21 126.2 7.6 84 75-160 2-94 (153)
37 cd02968 SCO SCO (an acronym fo 99.6 7.5E-16 1.6E-20 121.3 9.1 99 74-174 1-110 (142)
38 TIGR00385 dsbE periplasmic pro 99.6 2E-15 4.3E-20 124.5 10.7 110 65-179 30-143 (173)
39 cd02967 mauD Methylamine utili 99.6 6E-15 1.3E-19 112.2 11.7 100 76-179 1-101 (114)
40 cd03010 TlpA_like_DsbE TlpA-li 99.6 6E-15 1.3E-19 114.7 10.2 102 73-179 1-106 (127)
41 cd02966 TlpA_like_family TlpA- 99.6 1.3E-14 2.9E-19 107.4 10.4 101 77-179 1-103 (116)
42 cd03011 TlpA_like_ScsD_MtbDsbE 99.5 4.5E-14 9.8E-19 108.7 9.6 97 76-179 1-99 (123)
43 PRK10606 btuE putative glutath 99.5 6.5E-14 1.4E-18 117.6 8.6 95 73-170 3-112 (183)
44 COG0450 AhpC Peroxiredoxin [Po 99.5 1.5E-13 3.3E-18 115.6 9.7 104 69-173 3-117 (194)
45 PRK14018 trifunctional thiored 99.5 4.6E-13 9.9E-18 128.0 12.5 106 68-177 31-143 (521)
46 cd03009 TryX_like_TryX_NRX Try 99.4 4.1E-13 8.8E-18 105.0 7.2 98 80-180 3-106 (131)
47 cd03008 TryX_like_RdCVF Trypar 99.4 1.1E-12 2.3E-17 106.6 8.6 91 87-179 17-118 (146)
48 PLN02919 haloacid dehalogenase 99.4 1.1E-12 2.5E-17 134.5 10.3 112 66-179 388-508 (1057)
49 cd02964 TryX_like_family Trypa 99.3 8.3E-12 1.8E-16 98.2 8.7 96 80-179 3-105 (132)
50 PRK13728 conjugal transfer pro 99.2 6.3E-11 1.4E-15 99.4 9.1 82 70-171 50-132 (181)
51 KOG0854 Alkyl hydroperoxide re 99.2 6.7E-11 1.4E-15 98.4 8.5 105 66-171 3-116 (224)
52 TIGR01626 ytfJ_HI0045 conserve 99.2 9.4E-11 2E-15 98.7 8.8 103 69-177 23-149 (184)
53 PF13905 Thioredoxin_8: Thiore 99.1 7.4E-10 1.6E-14 81.6 9.1 83 97-179 1-88 (95)
54 TIGR02738 TrbB type-F conjugat 98.7 2.2E-08 4.7E-13 81.9 6.3 49 84-141 43-91 (153)
55 COG2077 Tpx Peroxiredoxin [Pos 98.7 1.1E-07 2.4E-12 77.4 9.3 103 69-174 18-122 (158)
56 KOG0541 Alkyl hydroperoxide re 98.7 3.5E-08 7.5E-13 80.7 6.1 113 65-177 5-128 (171)
57 KOG0852 Alkyl hydroperoxide re 98.7 1.1E-07 2.4E-12 79.1 8.9 102 71-173 6-117 (196)
58 PF02630 SCO1-SenC: SCO1/SenC; 98.6 4.6E-07 1E-11 75.2 9.8 84 71-156 28-118 (174)
59 KOG2501 Thioredoxin, nucleored 98.6 1.1E-07 2.3E-12 78.0 5.6 104 75-179 12-121 (157)
60 cd02950 TxlA TRX-like protein 98.5 5.1E-08 1.1E-12 78.3 3.2 85 79-165 2-89 (142)
61 cd02985 TRX_CDSP32 TRX family, 98.5 3.3E-07 7.2E-12 69.3 7.5 56 97-154 15-70 (103)
62 PF00255 GSHPx: Glutathione pe 98.5 6E-07 1.3E-11 69.5 8.3 80 77-159 3-91 (108)
63 COG0678 AHP1 Peroxiredoxin [Po 98.4 6.2E-07 1.3E-11 73.0 6.3 108 69-176 3-121 (165)
64 COG0386 BtuE Glutathione perox 98.3 1.6E-06 3.5E-11 70.9 7.2 94 74-170 4-112 (162)
65 cd02948 TRX_NDPK TRX domain, T 98.3 3.7E-07 8E-12 68.8 2.9 53 95-147 15-67 (102)
66 PF05988 DUF899: Bacterial pro 98.3 3.1E-06 6.7E-11 72.5 8.4 98 73-171 44-147 (211)
67 TIGR02740 TraF-like TraF-like 98.2 8.1E-07 1.8E-11 78.9 3.4 80 85-179 156-235 (271)
68 cd02999 PDI_a_ERp44_like PDIa 98.1 4.3E-06 9.3E-11 63.1 5.4 42 96-139 17-58 (100)
69 cd02963 TRX_DnaJ TRX domain, D 98.0 1.1E-05 2.3E-10 61.8 5.4 46 96-141 23-68 (111)
70 cd02993 PDI_a_APS_reductase PD 98.0 1.9E-05 4.1E-10 60.1 6.3 44 97-140 21-64 (109)
71 COG1999 Uncharacterized protei 98.0 4.7E-05 1E-09 65.1 9.3 94 77-173 49-155 (207)
72 cd02956 ybbN ybbN protein fami 98.0 1.6E-05 3.4E-10 58.4 5.4 63 97-160 12-74 (96)
73 cd02951 SoxW SoxW family; SoxW 97.9 1E-05 2.2E-10 62.7 4.2 46 95-141 11-60 (125)
74 cd02954 DIM1 Dim1 family; Dim1 97.9 4E-05 8.7E-10 59.9 6.8 84 97-181 14-97 (114)
75 KOG1651 Glutathione peroxidase 97.9 3.5E-05 7.5E-10 63.8 6.4 99 72-172 11-124 (171)
76 cd02953 DsbDgamma DsbD gamma f 97.9 1.7E-05 3.7E-10 59.4 4.2 69 95-164 9-85 (104)
77 cd02959 ERp19 Endoplasmic reti 97.9 2.7E-05 5.8E-10 60.6 5.3 71 96-167 18-91 (117)
78 cd03000 PDI_a_TMX3 PDIa family 97.9 4.3E-05 9.2E-10 57.3 6.3 45 97-141 15-61 (104)
79 PRK10996 thioredoxin 2; Provis 97.8 7E-06 1.5E-10 65.6 1.7 54 89-143 44-97 (139)
80 cd03003 PDI_a_ERdj5_N PDIa fam 97.8 3.1E-05 6.8E-10 57.6 4.7 56 95-154 16-71 (101)
81 cd03006 PDI_a_EFP1_N PDIa fami 97.8 9.6E-05 2.1E-09 57.4 7.5 47 95-142 27-73 (113)
82 cd02949 TRX_NTR TRX domain, no 97.8 2.8E-05 6.2E-10 57.7 3.9 65 95-161 11-76 (97)
83 cd03002 PDI_a_MPD1_like PDI fa 97.8 8.2E-05 1.8E-09 55.6 6.4 66 96-163 17-85 (109)
84 cd02998 PDI_a_ERp38 PDIa famil 97.8 4.5E-05 9.7E-10 56.2 4.9 64 97-162 18-85 (105)
85 cd03005 PDI_a_ERp46 PDIa famil 97.8 4.4E-05 9.5E-10 56.2 4.8 46 96-142 16-63 (102)
86 PRK09381 trxA thioredoxin; Pro 97.7 3.9E-05 8.5E-10 57.8 4.4 47 96-143 20-66 (109)
87 cd03004 PDI_a_ERdj5_C PDIa fam 97.7 0.00012 2.6E-09 54.5 6.8 54 97-154 19-72 (104)
88 TIGR01126 pdi_dom protein disu 97.7 4E-05 8.6E-10 56.2 4.1 68 94-164 10-81 (102)
89 cd02997 PDI_a_PDIR PDIa family 97.7 2.3E-05 4.9E-10 57.9 2.7 72 92-164 12-86 (104)
90 cd02962 TMX2 TMX2 family; comp 97.7 5.5E-05 1.2E-09 61.8 5.1 46 97-142 47-92 (152)
91 cd02996 PDI_a_ERp44 PDIa famil 97.7 6E-05 1.3E-09 56.8 4.9 50 92-141 13-67 (108)
92 PTZ00051 thioredoxin; Provisio 97.7 2.4E-05 5.2E-10 57.5 2.6 47 93-141 14-60 (98)
93 cd02986 DLP Dim1 family, Dim1- 97.7 0.00013 2.8E-09 57.1 6.8 80 96-179 13-95 (114)
94 cd02994 PDI_a_TMX PDIa family, 97.7 6.6E-05 1.4E-09 55.7 4.8 52 100-154 19-70 (101)
95 COG4312 Uncharacterized protei 97.7 0.00012 2.6E-09 63.1 6.5 94 77-171 54-153 (247)
96 cd02995 PDI_a_PDI_a'_C PDIa fa 97.7 0.00015 3.3E-09 53.3 6.3 47 97-143 18-65 (104)
97 PF00837 T4_deiodinase: Iodoth 97.6 0.00023 5.1E-09 62.1 7.7 108 68-177 72-206 (237)
98 TIGR01295 PedC_BrcD bacterioci 97.6 4.6E-05 1E-09 59.8 3.0 59 94-155 20-86 (122)
99 cd02984 TRX_PICOT TRX domain, 97.6 9.8E-05 2.1E-09 54.0 4.6 43 97-140 14-56 (97)
100 cd03001 PDI_a_P5 PDIa family, 97.6 0.00026 5.7E-09 52.1 6.7 46 96-142 17-62 (103)
101 cd02961 PDI_a_family Protein D 97.6 0.0001 2.2E-09 53.0 4.2 69 92-163 10-82 (101)
102 TIGR01068 thioredoxin thioredo 97.5 0.00015 3.3E-09 52.6 4.9 54 97-154 14-67 (101)
103 cd02947 TRX_family TRX family; 97.5 8.8E-05 1.9E-09 52.2 3.3 43 96-140 9-51 (93)
104 cd02992 PDI_a_QSOX PDIa family 97.5 0.0005 1.1E-08 53.0 7.5 57 97-154 19-77 (114)
105 PF00085 Thioredoxin: Thioredo 97.5 0.00047 1E-08 50.3 6.7 54 97-154 17-70 (103)
106 COG0526 TrxA Thiol-disulfide i 97.4 0.00075 1.6E-08 48.3 6.9 66 97-163 32-101 (127)
107 PF13098 Thioredoxin_2: Thiore 97.4 0.00028 6.2E-09 53.0 4.9 82 96-179 4-88 (112)
108 cd02952 TRP14_like Human TRX-r 97.4 0.00051 1.1E-08 54.0 6.1 43 98-141 22-71 (119)
109 KOG0907 Thioredoxin [Posttrans 97.3 0.00045 9.8E-09 53.2 5.3 53 97-154 21-73 (106)
110 PLN00410 U5 snRNP protein, DIM 97.3 0.00091 2E-08 54.2 7.1 55 96-154 22-76 (142)
111 cd01659 TRX_superfamily Thiore 97.2 0.0017 3.7E-08 41.2 6.3 45 101-147 1-45 (69)
112 PHA02278 thioredoxin-like prot 97.1 0.00069 1.5E-08 51.7 4.5 45 95-140 12-56 (103)
113 cd02975 PfPDO_like_N Pyrococcu 97.1 0.0017 3.7E-08 49.9 6.3 60 97-161 22-84 (113)
114 TIGR00424 APS_reduc 5'-adenyly 97.0 0.0019 4.1E-08 61.6 7.3 46 96-141 370-415 (463)
115 KOG2792 Putative cytochrome C 97.0 0.0033 7.2E-08 55.6 7.7 82 66-152 113-202 (280)
116 PF13899 Thioredoxin_7: Thiore 97.0 0.0056 1.2E-07 44.0 7.8 64 97-161 17-82 (82)
117 cd02957 Phd_like Phosducin (Ph 96.9 0.0023 5E-08 48.8 5.8 50 98-153 25-74 (113)
118 cd02989 Phd_like_TxnDC9 Phosdu 96.9 0.0016 3.5E-08 50.1 5.0 72 97-171 22-94 (113)
119 PTZ00443 Thioredoxin domain-co 96.9 0.0024 5.2E-08 55.4 6.2 59 98-160 53-114 (224)
120 PRK00293 dipZ thiol:disulfide 96.9 0.0029 6.3E-08 61.8 7.4 67 97-165 474-547 (571)
121 cd02955 SSP411 TRX domain, SSP 96.9 0.0038 8.2E-08 49.3 6.7 98 95-200 13-123 (124)
122 TIGR01130 ER_PDI_fam protein d 96.8 0.0011 2.3E-08 61.4 3.9 59 93-154 14-74 (462)
123 TIGR00411 redox_disulf_1 small 96.8 0.0028 6E-08 44.8 5.0 42 99-141 1-42 (82)
124 PF13728 TraF: F plasmid trans 96.8 0.0058 1.2E-07 52.6 7.8 74 90-179 115-189 (215)
125 cd03065 PDI_b_Calsequestrin_N 96.6 0.0042 9.2E-08 48.8 5.2 46 96-141 26-76 (120)
126 PTZ00102 disulphide isomerase; 96.6 0.003 6.5E-08 59.1 4.9 82 80-164 359-443 (477)
127 PLN02309 5'-adenylylsulfate re 96.6 0.0048 1E-07 58.8 6.4 44 96-139 364-407 (457)
128 KOG0910 Thioredoxin-like prote 96.5 0.0042 9.1E-08 50.8 4.7 44 97-141 61-104 (150)
129 cd02982 PDI_b'_family Protein 96.4 0.005 1.1E-07 45.3 4.4 53 98-154 13-65 (103)
130 PTZ00102 disulphide isomerase; 96.4 0.0041 8.9E-08 58.2 4.8 60 92-154 44-105 (477)
131 cd02965 HyaE HyaE family; HyaE 96.4 0.0044 9.5E-08 48.3 4.1 45 97-142 27-73 (111)
132 TIGR02196 GlrX_YruB Glutaredox 96.4 0.019 4.1E-07 39.0 6.8 54 101-161 2-57 (74)
133 cd02987 Phd_like_Phd Phosducin 96.0 0.017 3.8E-07 48.0 5.9 42 98-141 84-125 (175)
134 TIGR02739 TraF type-F conjugat 95.9 0.025 5.5E-07 50.1 6.9 69 96-179 150-219 (256)
135 COG3118 Thioredoxin domain-con 95.8 0.021 4.6E-07 51.5 5.9 47 97-144 43-89 (304)
136 PF14595 Thioredoxin_9: Thiore 95.6 0.0053 1.1E-07 48.8 1.1 67 96-164 40-109 (129)
137 TIGR02200 GlrX_actino Glutared 95.5 0.047 1E-06 37.7 5.8 41 101-148 2-42 (77)
138 TIGR00412 redox_disulf_2 small 95.5 0.035 7.5E-07 39.6 5.1 42 102-146 3-44 (76)
139 TIGR01130 ER_PDI_fam protein d 95.5 0.02 4.3E-07 52.9 4.8 47 96-142 363-411 (462)
140 KOG0190 Protein disulfide isom 95.5 0.015 3.2E-07 55.9 3.9 64 90-156 35-101 (493)
141 cd02973 TRX_GRX_like Thioredox 95.4 0.036 7.8E-07 37.8 4.7 39 101-141 3-41 (67)
142 PF04592 SelP_N: Selenoprotein 95.4 0.09 2E-06 46.0 8.1 78 97-174 26-111 (238)
143 cd02960 AGR Anterior Gradient 95.1 0.055 1.2E-06 43.2 5.6 99 96-200 22-124 (130)
144 TIGR02190 GlrX-dom Glutaredoxi 95.0 0.097 2.1E-06 37.4 6.1 53 101-160 10-63 (79)
145 PF00462 Glutaredoxin: Glutare 94.9 0.12 2.6E-06 34.6 6.3 50 101-157 1-52 (60)
146 PF07976 Phe_hydrox_dim: Pheno 94.8 0.026 5.6E-07 46.7 3.1 110 65-174 26-167 (169)
147 PRK13703 conjugal pilus assemb 94.8 0.1 2.3E-06 46.0 6.9 74 90-179 138-212 (248)
148 TIGR02180 GRX_euk Glutaredoxin 94.7 0.13 2.8E-06 36.2 6.3 53 101-156 1-56 (84)
149 TIGR02187 GlrX_arch Glutaredox 94.7 0.069 1.5E-06 45.4 5.5 42 96-139 19-62 (215)
150 PF06110 DUF953: Eukaryotic pr 94.6 0.12 2.5E-06 40.8 6.1 45 96-141 19-69 (119)
151 cd02976 NrdH NrdH-redoxin (Nrd 94.5 0.27 5.8E-06 33.1 7.2 55 101-162 2-58 (73)
152 PRK11200 grxA glutaredoxin 1; 94.5 0.2 4.3E-06 36.1 6.8 58 101-160 3-65 (85)
153 cd03026 AhpF_NTD_C TRX-GRX-lik 94.4 0.055 1.2E-06 40.0 3.8 60 96-160 11-72 (89)
154 TIGR02187 GlrX_arch Glutaredox 94.4 0.12 2.5E-06 44.0 6.3 44 96-141 132-175 (215)
155 cd03032 ArsC_Spx Arsenate Redu 94.4 0.14 3.1E-06 39.4 6.2 66 101-173 2-71 (115)
156 PHA02125 thioredoxin-like prot 94.3 0.086 1.9E-06 37.3 4.5 21 101-121 2-22 (75)
157 PTZ00062 glutaredoxin; Provisi 94.3 0.086 1.9E-06 45.2 5.2 40 98-139 18-57 (204)
158 cd02977 ArsC_family Arsenate R 94.2 0.11 2.4E-06 39.1 5.1 66 101-173 1-70 (105)
159 cd02988 Phd_like_VIAF Phosduci 94.2 0.086 1.9E-06 44.6 4.9 40 98-139 103-142 (192)
160 cd03036 ArsC_like Arsenate Red 94.1 0.12 2.6E-06 39.6 5.3 65 102-173 2-70 (111)
161 PRK01655 spxA transcriptional 93.9 0.19 4.2E-06 39.8 6.2 66 101-173 2-71 (131)
162 cd02066 GRX_family Glutaredoxi 93.7 0.37 8.1E-06 32.1 6.6 53 101-160 2-56 (72)
163 cd02958 UAS UAS family; UAS is 93.6 0.22 4.8E-06 37.7 5.9 67 96-164 16-89 (114)
164 TIGR01617 arsC_related transcr 93.5 0.23 5E-06 38.3 5.9 65 102-173 2-70 (117)
165 TIGR00365 monothiol glutaredox 93.5 0.41 8.8E-06 35.9 7.0 59 94-160 9-74 (97)
166 PRK10329 glutaredoxin-like pro 93.2 0.47 1E-05 34.3 6.8 55 101-162 3-58 (81)
167 KOG0191 Thioredoxin/protein di 93.2 0.15 3.2E-06 47.2 5.1 57 96-156 46-103 (383)
168 TIGR02194 GlrX_NrdH Glutaredox 93.1 0.47 1E-05 33.1 6.4 54 101-161 1-55 (72)
169 PRK12559 transcriptional regul 93.0 0.33 7.2E-06 38.5 6.2 66 101-173 2-71 (131)
170 smart00594 UAS UAS domain. 93.0 0.36 7.7E-06 37.4 6.2 66 96-163 26-97 (122)
171 PF13462 Thioredoxin_4: Thiore 92.6 0.38 8.3E-06 37.9 6.1 49 87-137 4-53 (162)
172 cd03418 GRX_GRXb_1_3_like Glut 92.5 0.88 1.9E-05 31.3 7.2 52 101-159 2-56 (75)
173 PRK10824 glutaredoxin-4; Provi 92.5 0.51 1.1E-05 36.9 6.5 57 99-162 16-79 (115)
174 cd03007 PDI_a_ERp29_N PDIa fam 91.9 0.33 7.2E-06 38.0 4.8 63 90-156 11-82 (116)
175 TIGR02181 GRX_bact Glutaredoxi 91.9 0.53 1.2E-05 33.1 5.5 50 101-157 1-52 (79)
176 cd03419 GRX_GRXh_1_2_like Glut 91.9 0.82 1.8E-05 31.9 6.5 53 101-158 2-57 (82)
177 cd03023 DsbA_Com1_like DsbA fa 91.7 0.27 5.8E-06 38.1 4.2 31 96-126 4-34 (154)
178 PRK10638 glutaredoxin 3; Provi 91.6 0.78 1.7E-05 32.8 6.2 51 101-158 4-56 (83)
179 cd03029 GRX_hybridPRX5 Glutare 91.6 0.91 2E-05 31.4 6.4 50 101-157 3-53 (72)
180 KOG1731 FAD-dependent sulfhydr 91.6 0.075 1.6E-06 51.8 1.0 60 97-157 57-119 (606)
181 TIGR02189 GlrX-like_plant Glut 91.4 0.42 9.1E-06 35.9 4.8 51 103-160 12-68 (99)
182 cd02979 PHOX_C FAD-dependent P 91.1 0.74 1.6E-05 37.9 6.4 113 72-184 1-147 (167)
183 PHA03050 glutaredoxin; Provisi 91.1 1 2.2E-05 34.5 6.7 56 101-158 15-73 (108)
184 cd03035 ArsC_Yffb Arsenate Red 90.9 0.59 1.3E-05 35.6 5.2 63 101-172 1-67 (105)
185 TIGR02183 GRXA Glutaredoxin, G 90.8 0.72 1.6E-05 33.5 5.4 58 101-160 2-64 (86)
186 PF13778 DUF4174: Domain of un 90.8 1.1 2.4E-05 34.8 6.8 76 90-165 3-91 (118)
187 KOG0908 Thioredoxin-like prote 90.3 0.3 6.4E-06 43.4 3.4 53 96-153 20-72 (288)
188 PRK13344 spxA transcriptional 89.9 1.1 2.4E-05 35.6 6.2 66 101-173 2-71 (132)
189 cd03028 GRX_PICOT_like Glutare 89.8 1.1 2.3E-05 32.9 5.7 61 92-160 3-70 (90)
190 cd03027 GRX_DEP Glutaredoxin ( 89.6 2.4 5.2E-05 29.4 7.1 51 101-158 3-55 (73)
191 PRK08294 phenol 2-monooxygenas 88.1 2 4.3E-05 42.6 7.9 118 66-183 460-609 (634)
192 PF05768 DUF836: Glutaredoxin- 87.6 1.7 3.6E-05 31.2 5.3 56 101-162 2-57 (81)
193 TIGR03759 conj_TIGR03759 integ 86.8 2.7 5.9E-05 35.9 6.9 69 97-171 109-184 (200)
194 KOG0190 Protein disulfide isom 86.8 0.86 1.9E-05 44.0 4.3 33 97-129 384-416 (493)
195 KOG3425 Uncharacterized conser 86.7 1.8 3.9E-05 34.3 5.3 45 96-141 25-76 (128)
196 COG0695 GrxC Glutaredoxin and 85.9 2.9 6.2E-05 30.1 5.8 54 101-161 3-60 (80)
197 KOG0191 Thioredoxin/protein di 85.5 1.5 3.1E-05 40.6 5.0 57 98-154 163-220 (383)
198 cd03034 ArsC_ArsC Arsenate Red 85.0 2.4 5.2E-05 32.5 5.3 66 101-173 1-70 (112)
199 PRK10026 arsenate reductase; P 84.9 3 6.4E-05 33.7 5.9 67 100-173 3-73 (141)
200 cd02991 UAS_ETEA UAS family, E 84.0 3.1 6.7E-05 32.2 5.5 89 96-191 16-112 (116)
201 COG4232 Thiol:disulfide interc 83.8 0.74 1.6E-05 45.1 2.4 75 90-164 465-546 (569)
202 cd03019 DsbA_DsbA DsbA family, 83.8 2.5 5.3E-05 33.8 5.1 38 96-134 14-51 (178)
203 PTZ00062 glutaredoxin; Provisi 82.8 1.7 3.7E-05 37.2 4.0 64 90-161 106-176 (204)
204 cd03020 DsbA_DsbC_DsbG DsbA fa 82.2 2.4 5.1E-05 35.3 4.6 26 96-121 76-101 (197)
205 TIGR00014 arsC arsenate reduct 82.1 4.2 9.1E-05 31.2 5.6 66 101-173 1-71 (114)
206 PRK10877 protein disulfide iso 81.9 3.1 6.7E-05 36.0 5.3 37 96-136 106-142 (232)
207 TIGR00995 3a0901s06TIC22 chlor 81.3 2.3 5E-05 38.0 4.3 84 70-162 77-161 (270)
208 COG2179 Predicted hydrolase of 80.4 3.8 8.2E-05 34.3 5.0 40 116-155 48-87 (175)
209 PF13192 Thioredoxin_3: Thiore 75.7 9.6 0.00021 26.7 5.4 48 106-160 7-56 (76)
210 PRK11657 dsbG disulfide isomer 75.4 6.2 0.00013 34.6 5.2 29 96-124 116-144 (251)
211 PF03190 Thioredox_DsbH: Prote 74.7 8 0.00017 32.1 5.4 70 97-166 37-116 (163)
212 cd02972 DsbA_family DsbA famil 74.2 4.7 0.0001 28.0 3.5 35 101-136 1-35 (98)
213 COG1393 ArsC Arsenate reductas 73.9 6.3 0.00014 30.7 4.4 66 100-172 2-71 (117)
214 cd01427 HAD_like Haloacid deha 72.7 9.1 0.0002 27.9 4.9 38 116-153 26-63 (139)
215 PRK13601 putative L7Ae-like ri 72.3 13 0.00028 27.2 5.5 53 122-175 16-72 (82)
216 PRK10853 putative reductase; P 71.5 9.2 0.0002 29.7 4.8 64 101-173 2-69 (118)
217 cd03041 GST_N_2GST_N GST_N fam 71.4 21 0.00045 24.8 6.3 53 101-161 2-57 (77)
218 KOG3414 Component of the U4/U6 71.0 41 0.00088 27.1 8.3 54 97-154 23-76 (142)
219 cd03060 GST_N_Omega_like GST_N 71.0 8.4 0.00018 26.3 4.1 54 102-162 2-56 (71)
220 PRK06184 hypothetical protein; 69.9 17 0.00036 34.5 7.2 87 68-182 385-472 (502)
221 PF03960 ArsC: ArsC family; I 69.8 20 0.00043 27.0 6.3 58 106-170 3-64 (110)
222 COG1651 DsbG Protein-disulfide 68.9 11 0.00023 32.2 5.1 49 78-128 67-115 (244)
223 cd00570 GST_N_family Glutathio 68.4 8.5 0.00018 24.7 3.6 57 103-165 3-60 (71)
224 PRK12759 bifunctional gluaredo 67.5 11 0.00023 35.6 5.2 41 101-148 4-44 (410)
225 KOG0912 Thiol-disulfide isomer 67.2 15 0.00033 33.8 5.8 32 97-128 13-44 (375)
226 cd03033 ArsC_15kD Arsenate Red 67.2 18 0.00038 27.9 5.6 64 101-173 2-69 (113)
227 PF06053 DUF929: Domain of unk 67.0 8 0.00017 34.2 4.0 38 92-129 53-90 (249)
228 PRK06183 mhpA 3-(3-hydroxyphen 66.6 18 0.0004 34.7 6.8 99 69-182 411-509 (538)
229 PF09695 YtfJ_HI0045: Bacteria 66.4 62 0.0013 26.8 8.8 106 70-177 2-127 (160)
230 PF00875 DNA_photolyase: DNA p 65.8 29 0.00063 27.7 6.9 66 96-162 24-97 (165)
231 PRK13600 putative ribosomal pr 64.9 26 0.00057 25.8 5.8 55 120-175 19-77 (84)
232 cd03059 GST_N_SspA GST_N famil 62.8 9.1 0.0002 25.8 2.9 53 103-164 3-58 (73)
233 PRK10954 periplasmic protein d 62.6 14 0.0003 31.0 4.6 34 100-134 40-76 (207)
234 PF01323 DSBA: DSBA-like thior 60.8 32 0.0007 27.6 6.4 41 101-141 2-42 (193)
235 PF02966 DIM1: Mitosis protein 60.5 31 0.00066 27.8 5.9 45 96-141 19-63 (133)
236 PRK01018 50S ribosomal protein 59.9 32 0.0007 25.8 5.7 51 123-173 25-79 (99)
237 PTZ00222 60S ribosomal protein 59.9 61 0.0013 28.9 8.2 54 119-173 137-195 (263)
238 KOG1752 Glutaredoxin and relat 59.7 30 0.00066 26.4 5.6 15 99-114 15-29 (104)
239 PF05176 ATP-synt_10: ATP10 pr 58.6 18 0.0004 31.9 4.8 109 66-177 92-218 (252)
240 PRK12702 mannosyl-3-phosphogly 57.4 50 0.0011 30.1 7.4 49 120-168 24-72 (302)
241 PF10740 DUF2529: Protein of u 56.4 16 0.00035 30.6 3.8 82 72-163 60-146 (172)
242 TIGR03765 ICE_PFL_4695 integra 56.4 68 0.0015 24.8 6.9 61 115-176 36-96 (105)
243 PRK13602 putative ribosomal pr 56.3 46 0.00099 24.1 5.8 55 121-176 18-76 (82)
244 TIGR01662 HAD-SF-IIIA HAD-supe 55.7 41 0.0009 25.4 5.9 40 117-156 28-75 (132)
245 TIGR01684 viral_ppase viral ph 55.5 64 0.0014 29.4 7.8 68 74-159 124-193 (301)
246 PF13419 HAD_2: Haloacid dehal 55.0 23 0.00051 27.1 4.4 34 121-154 84-117 (176)
247 PRK07714 hypothetical protein; 54.5 86 0.0019 23.3 7.3 59 123-182 27-89 (100)
248 PF00702 Hydrolase: haloacid d 54.5 38 0.00082 27.3 5.8 58 117-174 130-196 (215)
249 PF11072 DUF2859: Protein of u 54.5 68 0.0015 26.0 7.0 60 115-175 74-133 (142)
250 PF09419 PGP_phosphatase: Mito 53.2 23 0.0005 29.4 4.3 80 74-155 17-109 (168)
251 TIGR03609 S_layer_CsaB polysac 52.0 87 0.0019 27.3 8.1 61 97-158 172-236 (298)
252 TIGR01485 SPP_plant-cyano sucr 51.4 31 0.00068 29.4 5.0 54 114-167 21-76 (249)
253 COG3769 Predicted hydrolase (H 50.7 24 0.00052 31.2 4.1 70 75-166 6-76 (274)
254 PTZ00365 60S ribosomal protein 50.6 1E+02 0.0022 27.6 8.1 54 118-172 136-194 (266)
255 PTZ00106 60S ribosomal protein 50.4 47 0.001 25.5 5.3 52 124-175 35-90 (108)
256 cd03061 GST_N_CLIC GST_N famil 48.6 23 0.00051 26.3 3.3 57 107-170 20-77 (91)
257 COG3019 Predicted metal-bindin 47.1 54 0.0012 26.8 5.3 50 98-157 25-74 (149)
258 TIGR03556 photolyase_8HDF deox 46.9 1.1E+02 0.0024 29.1 8.4 58 97-154 27-92 (471)
259 PRK08132 FAD-dependent oxidore 46.9 48 0.001 31.9 6.0 97 68-182 426-522 (547)
260 cd03055 GST_N_Omega GST_N fami 46.3 15 0.00032 26.4 1.9 54 101-161 19-73 (89)
261 cd03045 GST_N_Delta_Epsilon GS 46.2 21 0.00046 24.1 2.6 61 102-167 2-64 (74)
262 TIGR00591 phr2 photolyase PhrI 45.4 1.2E+02 0.0026 28.6 8.3 58 97-154 53-115 (454)
263 COG0809 QueA S-adenosylmethion 45.3 73 0.0016 29.6 6.5 59 124-186 243-307 (348)
264 cd03037 GST_N_GRX2 GST_N famil 44.6 48 0.001 22.2 4.2 48 104-161 4-54 (71)
265 TIGR01761 thiaz-red thiazoliny 44.3 34 0.00073 31.6 4.3 48 108-162 10-57 (343)
266 cd01821 Rhamnogalacturan_acety 44.1 92 0.002 25.2 6.5 43 113-155 90-149 (198)
267 cd00860 ThrRS_anticodon ThrRS 43.8 96 0.0021 21.5 5.9 49 116-164 14-63 (91)
268 cd03051 GST_N_GTT2_like GST_N 42.4 68 0.0015 21.1 4.7 56 102-162 2-59 (74)
269 PF13714 PEP_mutase: Phosphoen 42.3 1.7E+02 0.0038 25.4 8.3 76 100-175 138-217 (238)
270 PRK06683 hypothetical protein; 41.5 86 0.0019 22.7 5.3 52 123-175 20-75 (82)
271 TIGR01616 nitro_assoc nitrogen 41.3 89 0.0019 24.5 5.7 64 101-173 3-70 (126)
272 KOG1615 Phosphoserine phosphat 40.9 67 0.0014 27.9 5.2 47 119-165 93-145 (227)
273 PHA03398 viral phosphatase sup 40.7 66 0.0014 29.4 5.5 77 74-168 126-204 (303)
274 PF13417 GST_N_3: Glutathione 40.1 19 0.00041 24.8 1.6 56 104-166 2-58 (75)
275 PF12710 HAD: haloacid dehalog 38.4 38 0.00082 26.9 3.3 35 121-155 96-130 (192)
276 TIGR02463 MPGP_rel mannosyl-3- 38.2 69 0.0015 26.5 5.0 48 120-167 22-70 (221)
277 PLN02311 chalcone isomerase 38.2 68 0.0015 28.8 5.1 90 1-92 1-94 (271)
278 cd01453 vWA_transcription_fact 37.9 1.4E+02 0.0029 24.6 6.7 43 120-162 126-169 (183)
279 TIGR02765 crypto_DASH cryptoch 37.7 81 0.0017 29.4 5.8 46 116-162 60-105 (429)
280 PRK11320 prpB 2-methylisocitra 37.6 1.9E+02 0.0041 26.1 7.9 56 121-176 170-233 (292)
281 cd03031 GRX_GRX_like Glutaredo 37.3 1.4E+02 0.003 24.1 6.4 38 108-152 15-53 (147)
282 PLN02640 glucose-6-phosphate 1 37.2 1.1E+02 0.0024 30.3 6.8 46 96-141 86-132 (573)
283 TIGR01428 HAD_type_II 2-haloal 36.9 1E+02 0.0022 24.9 5.7 40 117-156 95-136 (198)
284 PF05116 S6PP: Sucrose-6F-phos 36.5 84 0.0018 27.1 5.4 58 110-167 15-74 (247)
285 cd03040 GST_N_mPGES2 GST_N fam 35.8 48 0.001 22.6 3.1 52 101-161 2-54 (77)
286 cd01026 TOPRIM_OLD TOPRIM_OLD: 35.7 1.5E+02 0.0033 21.5 6.0 41 125-165 28-68 (97)
287 TIGR01488 HAD-SF-IB Haloacid D 35.1 79 0.0017 24.8 4.7 37 118-154 77-113 (177)
288 PF04278 Tic22: Tic22-like fam 34.9 37 0.0008 30.3 2.9 85 70-162 70-161 (274)
289 TIGR03143 AhpF_homolog putativ 34.5 59 0.0013 31.6 4.5 60 97-161 476-537 (555)
290 COG4607 CeuA ABC-type enteroch 34.4 94 0.002 28.5 5.4 61 72-151 37-99 (320)
291 PRK10200 putative racemase; Pr 34.3 77 0.0017 27.2 4.8 40 115-154 60-100 (230)
292 PF14968 CCDC84: Coiled coil p 34.2 9.1 0.0002 35.4 -1.1 15 105-119 57-71 (336)
293 COG4615 PvdE ABC-type sideroph 34.0 1.1E+02 0.0025 29.5 6.0 53 94-148 464-519 (546)
294 PRK04175 rpl7ae 50S ribosomal 33.9 1.6E+02 0.0034 23.0 6.0 50 123-173 39-93 (122)
295 TIGR01490 HAD-SF-IB-hyp1 HAD-s 33.8 1.2E+02 0.0025 24.6 5.6 33 122-154 95-127 (202)
296 TIGR01689 EcbF-BcbF capsule bi 33.8 1.4E+02 0.0031 23.4 5.8 43 118-160 28-86 (126)
297 PF04134 DUF393: Protein of un 33.4 36 0.00077 25.4 2.3 29 105-136 3-31 (114)
298 PF07905 PucR: Purine cataboli 32.9 1.4E+02 0.003 22.9 5.6 38 118-155 60-102 (123)
299 PF08235 LNS2: LNS2 (Lipin/Ned 32.9 1.3E+02 0.0029 24.7 5.7 49 117-165 30-87 (157)
300 PF03129 HGTP_anticodon: Antic 32.9 1.3E+02 0.0028 21.3 5.1 49 116-164 15-64 (94)
301 PF02677 DUF208: Uncharacteriz 32.8 2.4E+02 0.0053 23.6 7.3 118 98-216 23-152 (176)
302 COG5418 Predicted secreted pro 32.2 69 0.0015 26.4 3.8 61 69-139 46-106 (164)
303 cd00738 HGTP_anticodon HGTP an 31.9 1.3E+02 0.0028 20.9 4.9 47 116-162 17-64 (94)
304 cd00859 HisRS_anticodon HisRS 31.8 1.6E+02 0.0035 19.8 5.7 46 116-161 14-60 (91)
305 PF01408 GFO_IDH_MocA: Oxidore 31.6 74 0.0016 23.4 3.8 32 129-162 24-55 (120)
306 PF01297 TroA: Periplasmic sol 30.7 80 0.0017 27.1 4.3 46 116-162 185-231 (256)
307 TIGR01261 hisB_Nterm histidino 30.6 1.4E+02 0.003 24.1 5.5 69 78-158 3-89 (161)
308 PF01248 Ribosomal_L7Ae: Ribos 30.4 67 0.0015 23.2 3.3 53 121-174 22-79 (95)
309 TIGR02766 crypt_chrom_pln cryp 30.3 1.6E+02 0.0034 28.0 6.6 39 116-154 50-89 (475)
310 cd05013 SIS_RpiR RpiR-like pro 30.3 1.1E+02 0.0024 22.7 4.6 44 98-147 61-104 (139)
311 PF00448 SRP54: SRP54-type pro 30.2 1.1E+02 0.0023 25.7 4.8 56 98-157 1-61 (196)
312 COG2143 Thioredoxin-related pr 30.1 2.2E+02 0.0049 23.9 6.5 25 96-120 41-65 (182)
313 cd00861 ProRS_anticodon_short 30.0 1.5E+02 0.0033 20.7 5.1 51 114-164 15-66 (94)
314 PF02514 CobN-Mg_chel: CobN/Ma 29.9 1.6E+02 0.0034 31.6 7.0 74 98-174 73-163 (1098)
315 COG5561 Predicted metal-bindin 29.8 35 0.00076 25.8 1.6 30 107-137 5-34 (101)
316 PRK01158 phosphoglycolate phos 29.7 1.2E+02 0.0027 24.9 5.2 49 118-166 24-72 (230)
317 PRK10017 colanic acid biosynth 29.6 3.4E+02 0.0074 25.7 8.6 42 96-138 233-281 (426)
318 PHA00649 hypothetical protein 29.2 1.2E+02 0.0026 21.8 4.2 39 106-151 5-43 (83)
319 COG0560 SerB Phosphoserine pho 28.9 99 0.0021 26.3 4.5 37 119-155 82-118 (212)
320 KOG4530 Predicted flavoprotein 28.8 73 0.0016 26.8 3.5 34 91-124 113-146 (199)
321 TIGR01482 SPP-subfamily Sucros 28.6 1.2E+02 0.0026 24.9 4.9 42 121-162 22-63 (225)
322 cd03025 DsbA_FrnE_like DsbA fa 28.4 61 0.0013 26.0 3.0 33 101-134 3-35 (193)
323 cd03053 GST_N_Phi GST_N family 28.4 1.1E+02 0.0024 20.5 4.0 57 101-162 2-60 (76)
324 PRK13738 conjugal transfer pil 28.3 2.2E+02 0.0049 24.5 6.5 62 109-178 127-188 (209)
325 TIGR02319 CPEP_Pphonmut carbox 28.1 3.6E+02 0.0078 24.4 8.2 55 122-176 170-232 (294)
326 smart00775 LNS2 LNS2 domain. T 28.0 2.2E+02 0.0048 22.8 6.2 50 117-166 30-88 (157)
327 cd01450 vWFA_subfamily_ECM Von 28.0 1.5E+02 0.0032 22.4 5.0 34 118-151 120-155 (161)
328 TIGR00035 asp_race aspartate r 27.9 1.1E+02 0.0025 25.9 4.7 57 115-171 60-117 (229)
329 cd01460 vWA_midasin VWA_Midasi 27.9 76 0.0016 28.3 3.7 18 124-141 188-205 (266)
330 PF12740 Chlorophyllase2: Chlo 27.5 1.5E+02 0.0032 26.4 5.4 37 96-137 15-51 (259)
331 TIGR02949 anti_SigH_actin anti 27.4 68 0.0015 23.3 2.8 23 107-129 37-59 (84)
332 TIGR02461 osmo_MPG_phos mannos 27.3 1.7E+02 0.0036 24.8 5.7 46 120-165 21-66 (225)
333 PRK15317 alkyl hydroperoxide r 27.2 1.5E+02 0.0033 28.3 6.0 39 96-136 115-153 (517)
334 cd03058 GST_N_Tau GST_N family 27.0 89 0.0019 21.0 3.3 57 103-166 3-61 (74)
335 cd02983 P5_C P5 family, C-term 26.6 3.1E+02 0.0067 21.3 6.7 67 97-163 21-92 (130)
336 TIGR00099 Cof-subfamily Cof su 26.5 2.2E+02 0.0047 24.1 6.2 47 120-166 22-68 (256)
337 TIGR00338 serB phosphoserine p 26.5 1.6E+02 0.0034 24.2 5.2 33 122-154 93-125 (219)
338 TIGR02320 PEP_mutase phosphoen 26.5 3.7E+02 0.008 24.1 7.9 55 121-175 173-238 (285)
339 COG0561 Cof Predicted hydrolas 26.4 1.4E+02 0.0031 25.3 5.2 52 117-168 23-74 (264)
340 PF01136 Peptidase_U32: Peptid 26.4 3.1E+02 0.0067 22.9 7.1 56 116-174 1-64 (233)
341 PLN02954 phosphoserine phospha 26.0 1.3E+02 0.0029 24.7 4.8 38 118-155 88-125 (224)
342 KOG0098 GTPase Rab2, small G p 25.8 1.7E+02 0.0036 25.3 5.2 47 109-155 87-145 (216)
343 PF11360 DUF3110: Protein of u 25.4 1.4E+02 0.003 22.0 4.1 64 84-159 12-75 (86)
344 PF10790 DUF2604: Protein of U 25.0 67 0.0015 22.9 2.2 28 69-96 30-57 (76)
345 cd05017 SIS_PGI_PMI_1 The memb 24.8 2.1E+02 0.0046 21.4 5.3 51 96-154 42-92 (119)
346 TIGR02743 TraW type-F conjugat 24.7 2.3E+02 0.0051 24.2 6.0 61 109-177 129-189 (202)
347 TIGR00377 ant_ant_sig anti-ant 24.7 2.1E+02 0.0045 20.5 5.1 19 119-137 64-82 (108)
348 PF13344 Hydrolase_6: Haloacid 24.7 2.4E+02 0.0052 20.8 5.5 39 117-155 17-58 (101)
349 TIGR02317 prpB methylisocitrat 24.6 3.9E+02 0.0086 24.0 7.7 54 122-175 166-227 (285)
350 cd01018 ZntC Metal binding pro 24.4 2.1E+02 0.0044 24.9 5.8 38 117-154 204-242 (266)
351 cd03056 GST_N_4 GST_N family, 24.2 91 0.002 20.5 2.8 57 103-164 3-61 (73)
352 PF08285 DPM3: Dolichol-phosph 24.2 80 0.0017 23.6 2.7 27 107-133 64-91 (91)
353 PF08282 Hydrolase_3: haloacid 23.9 2.3E+02 0.005 22.9 5.8 47 118-164 19-65 (254)
354 PLN02834 3-dehydroquinate synt 23.7 3.5E+02 0.0076 25.7 7.6 36 114-149 144-183 (433)
355 cd01473 vWA_CTRP CTRP for CS 23.7 94 0.002 25.7 3.4 24 119-142 128-151 (192)
356 TIGR03351 PhnX-like phosphonat 23.7 2.1E+02 0.0045 23.5 5.5 36 119-154 92-127 (220)
357 cd00851 MTH1175 This uncharact 23.7 2.8E+02 0.006 19.8 5.9 24 70-93 16-39 (103)
358 PF15632 ATPgrasp_Ter: ATP-gra 23.6 1.6E+02 0.0035 27.0 5.1 58 115-172 75-144 (329)
359 TIGR01491 HAD-SF-IB-PSPlk HAD- 23.5 1.7E+02 0.0036 23.4 4.7 34 121-154 87-120 (201)
360 PF01206 TusA: Sulfurtransfera 23.4 2.4E+02 0.0052 19.0 5.1 56 101-160 2-59 (70)
361 TIGR02471 sucr_syn_bact_C sucr 23.3 2E+02 0.0042 24.1 5.3 47 118-165 19-67 (236)
362 TIGR00213 GmhB_yaeD D,D-heptos 23.3 3.1E+02 0.0067 21.9 6.3 24 117-140 29-52 (176)
363 TIGR01487 SPP-like sucrose-pho 23.2 2.4E+02 0.0052 23.2 5.8 42 118-159 22-63 (215)
364 COG4469 CoiA Competence protei 23.0 20 0.00044 33.1 -0.9 35 78-117 2-36 (342)
365 KOG0713 Molecular chaperone (D 22.9 28 0.0006 32.2 -0.0 36 138-175 50-86 (336)
366 COG0066 LeuD 3-isopropylmalate 22.8 1.1E+02 0.0024 26.0 3.6 30 99-134 64-93 (191)
367 PF01583 APS_kinase: Adenylyls 22.7 2.1E+02 0.0045 23.4 5.1 55 113-167 57-114 (156)
368 PRK10826 2-deoxyglucose-6-phos 22.4 2.2E+02 0.0049 23.4 5.4 35 120-154 98-132 (222)
369 PRK10674 deoxyribodipyrimidine 22.4 4.7E+02 0.01 24.9 8.3 45 115-160 55-103 (472)
370 cd06556 ICL_KPHMT Members of t 22.3 4.4E+02 0.0095 23.0 7.4 61 115-175 154-220 (240)
371 PRK01122 potassium-transportin 22.3 1.7E+02 0.0036 29.7 5.3 36 119-154 450-485 (679)
372 PRK10530 pyridoxal phosphate ( 22.3 1.9E+02 0.0041 24.5 5.1 47 120-166 26-72 (272)
373 PRK07283 hypothetical protein; 22.3 2.6E+02 0.0056 20.7 5.2 52 123-175 27-82 (98)
374 PRK14010 potassium-transportin 22.2 1.8E+02 0.0038 29.5 5.4 37 118-154 445-481 (673)
375 KOG0084 GTPase Rab1/YPT1, smal 22.0 3.9E+02 0.0084 23.1 6.7 73 77-154 59-147 (205)
376 TIGR02886 spore_II_AA anti-sig 22.0 2.3E+02 0.005 20.4 4.9 37 116-154 57-93 (106)
377 TIGR01486 HAD-SF-IIB-MPGP mann 21.9 1.6E+02 0.0034 25.1 4.5 48 120-167 22-69 (256)
378 COG1465 Predicted alternative 21.8 98 0.0021 28.5 3.2 35 69-103 324-358 (376)
379 PRK15126 thiamin pyrimidine py 21.8 2E+02 0.0043 24.6 5.1 47 120-166 25-71 (272)
380 PF11775 CobT_C: Cobalamin bio 21.8 2.6E+02 0.0056 24.4 5.7 59 81-141 115-188 (219)
381 PF07476 MAAL_C: Methylasparta 21.5 2.3E+02 0.005 25.0 5.3 43 113-155 119-164 (248)
382 TIGR01647 ATPase-IIIA_H plasma 21.4 1.9E+02 0.0041 29.4 5.6 38 120-157 448-485 (755)
383 cd01137 PsaA Metal binding pro 21.2 1.9E+02 0.0042 25.5 5.0 38 117-154 213-251 (287)
384 PF02844 GARS_N: Phosphoribosy 21.0 76 0.0016 24.1 2.0 34 121-154 53-88 (100)
385 cd03052 GST_N_GDAP1 GST_N fami 20.9 1.3E+02 0.0029 20.6 3.2 60 102-166 2-63 (73)
386 PF04007 DUF354: Protein of un 20.8 2.7E+02 0.0057 25.6 5.9 50 115-165 12-61 (335)
387 PF12689 Acid_PPase: Acid Phos 20.8 2.7E+02 0.0059 23.0 5.5 14 79-92 35-48 (169)
388 COG1433 Uncharacterized conser 20.7 3.8E+02 0.0082 21.0 6.0 22 71-92 19-40 (121)
389 cd05014 SIS_Kpsf KpsF-like pro 20.7 1.6E+02 0.0034 22.0 3.8 44 99-148 49-92 (128)
390 TIGR03677 rpl7ae 50S ribosomal 20.6 3.7E+02 0.008 20.6 5.9 49 124-173 36-89 (117)
391 TIGR01484 HAD-SF-IIB HAD-super 20.5 2.2E+02 0.0048 23.0 5.0 47 117-165 20-66 (204)
392 TIGR03436 acidobact_VWFA VWFA- 20.5 4.3E+02 0.0093 23.0 7.1 37 118-154 182-234 (296)
393 cd03049 GST_N_3 GST_N family, 20.5 2.3E+02 0.0049 18.8 4.3 54 102-162 2-58 (73)
394 PRK03669 mannosyl-3-phosphogly 20.5 2E+02 0.0044 24.8 4.9 46 121-166 31-77 (271)
395 PF04800 ETC_C1_NDUFA4: ETC co 20.5 77 0.0017 24.2 2.0 30 134-163 51-80 (101)
396 COG1358 RPL8A Ribosomal protei 20.3 3.3E+02 0.0072 21.2 5.6 54 121-175 34-93 (116)
397 PF12017 Tnp_P_element: Transp 20.3 1.9E+02 0.0042 25.3 4.7 38 116-153 195-232 (236)
398 PF04244 DPRP: Deoxyribodipyri 20.3 2.8E+02 0.0061 23.9 5.7 47 116-162 48-101 (224)
399 COG1490 Dtd D-Tyr-tRNAtyr deac 20.3 95 0.0021 25.3 2.5 34 131-164 28-61 (145)
400 PRK11869 2-oxoacid ferredoxin 20.2 94 0.002 27.9 2.8 23 104-126 6-30 (280)
401 PRK09545 znuA high-affinity zi 20.2 2.3E+02 0.005 25.4 5.4 38 117-154 239-277 (311)
402 cd00858 GlyRS_anticodon GlyRS 20.1 3.9E+02 0.0084 20.1 8.7 48 116-164 41-89 (121)
403 PLN03098 LPA1 LOW PSII ACCUMUL 20.1 2.9E+02 0.0063 26.7 6.2 63 75-140 276-338 (453)
No 1
>cd02970 PRX_like2 Peroxiredoxin (PRX)-like 2 family; hypothetical proteins that show sequence similarity to PRXs. Members of this group contain a CXXC motif, similar to TRX. The second cysteine in the motif corresponds to the peroxidatic cysteine of PRX, however, these proteins do not contain the other two residues of the catalytic triad of PRX. PRXs confer a protective antioxidant role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either thioredoxin, glutathione, trypanothione and AhpF. TRXs alter the redox state of target proteins by catalyzing the reduction of their disulfide bonds via the CXXC motif using reducing equivalents derived from either NADPH or ferredoxins.
Probab=99.94 E-value=3.1e-26 Score=181.29 Aligned_cols=136 Identities=30% Similarity=0.461 Sum_probs=116.2
Q ss_pred cCCCcEEecCCCCeEeCCCccCCCeEEEEEEcCCCChhHHHHHHHHHHhHHHHHhCCCEEEEEcCCCHHHHHHHHHHcCC
Q 027527 74 LLDTVKVYDVNGNAIPISDLWKDRKAVVAFARHFGCVLCRKRADYLAAKKDVMDASGVALVLIGPGSVEQARTFSEQTKF 153 (222)
Q Consensus 74 ~apdf~L~D~~G~~v~Lsdl~~~~~vvVvF~R~~~Cp~C~~el~~L~~~~~~l~~~gv~lvaIs~~s~~~i~~f~~~~~~ 153 (222)
.+|+|++.|.+|+.++++++.+++++||+|||++|||+|++|++.|+++++++++.|+++|+|+.++.+..++|.+++++
T Consensus 1 ~~p~f~l~~~~g~~~~l~~~~~~~~~vl~f~~~~~Cp~C~~~~~~l~~~~~~~~~~~v~vv~V~~~~~~~~~~~~~~~~~ 80 (149)
T cd02970 1 TAPDFELPDAGGETVTLSALLGEGPVVVVFYRGFGCPFCREYLRALSKLLPELDALGVELVAVGPESPEKLEAFDKGKFL 80 (149)
T ss_pred CCCCccccCCCCCEEchHHHhcCCCEEEEEECCCCChhHHHHHHHHHHHHHHHHhcCeEEEEEeCCCHHHHHHHHHhcCC
Confidence 47999999999999999998777899999999999999999999999999999999999999999999888899999999
Q ss_pred CCceeecCChHHHHHcCCccccceeeccchhHHHHHHHHHHHHhhhccccccCCccCCceeeCceEEE
Q 027527 154 KGEVYADPNHSSYEALSFVSGVLVTFTPKAGLKIIQSYMEGYRQDWKLSFERDTVSRGGWYDTPLFEV 221 (222)
Q Consensus 154 pfpil~Dpd~~lyk~lGl~~~~~~~~~P~a~~~~l~~~~~g~r~~~k~~~~g~~~~g~~~Q~GG~fvv 221 (222)
+||+++|+++.++++||+.......+.+..+++ ....... ....|++.|+||+|||
T Consensus 81 ~~p~~~D~~~~~~~~~g~~~~~~~~~~~~~~~~-----------~~~~~~~-~~~~~~~~~~p~~fvi 136 (149)
T cd02970 81 PFPVYADPDRKLYRALGLVRSLPWSNTPRALWK-----------NAAIGFR-GNDEGDGLQLPGVFVI 136 (149)
T ss_pred CCeEEECCchhHHHHcCceecCcHHHHHHHHhh-----------Ccccccc-cCCCCcccccceEEEE
Confidence 999999999999999999877665554433332 1111122 2355779999999997
No 2
>COG1225 Bcp Peroxiredoxin [Posttranslational modification, protein turnover, chaperones]
Probab=99.87 E-value=5.7e-22 Score=162.28 Aligned_cols=106 Identities=17% Similarity=0.197 Sum_probs=101.2
Q ss_pred CccccCcCCCcEEecCCCCeEeCCCccCCCeEEEEEEcCCCChhHHHHHHHHHHhHHHHHhCCCEEEEEcCCCHHHHHHH
Q 027527 68 SEDTKNLLDTVKVYDVNGNAIPISDLWKDRKAVVAFARHFGCVLCRKRADYLAAKKDVMDASGVALVLIGPGSVEQARTF 147 (222)
Q Consensus 68 ~~~~g~~apdf~L~D~~G~~v~Lsdl~~~~~vvVvF~R~~~Cp~C~~el~~L~~~~~~l~~~gv~lvaIs~~s~~~i~~f 147 (222)
...+|+++|||+|.|.+|+.++|+|+. ++++||.||+..++|.|..|+..+++.+++|++.|++|++||.|+++..++|
T Consensus 3 ~l~~G~~aPdF~Lp~~~g~~v~Lsd~~-Gk~VVLyFYPk~~TpgCT~Ea~~Frd~~~ef~~~~a~V~GIS~Ds~~~~~~F 81 (157)
T COG1225 3 MLKVGDKAPDFELPDQDGETVSLSDLR-GKPVVLYFYPKDFTPGCTTEACDFRDLLEEFEKLGAVVLGISPDSPKSHKKF 81 (157)
T ss_pred cCCCCCcCCCeEeecCCCCEEehHHhc-CCcEEEEECCCCCCCcchHHHHHHHHHHHHHHhCCCEEEEEeCCCHHHHHHH
Confidence 367899999999999999999999975 6699999999999999999999999999999999999999999999999999
Q ss_pred HHHcCCCCceeecCChHHHHHcCCccc
Q 027527 148 SEQTKFKGEVYADPNHSSYEALSFVSG 174 (222)
Q Consensus 148 ~~~~~~pfpil~Dpd~~lyk~lGl~~~ 174 (222)
+++++++|++++|+++++.++||+...
T Consensus 82 ~~k~~L~f~LLSD~~~~v~~~ygv~~~ 108 (157)
T COG1225 82 AEKHGLTFPLLSDEDGEVAEAYGVWGE 108 (157)
T ss_pred HHHhCCCceeeECCcHHHHHHhCcccc
Confidence 999999999999999999999998653
No 3
>KOG4498 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.86 E-value=1.4e-22 Score=168.63 Aligned_cols=159 Identities=35% Similarity=0.578 Sum_probs=128.0
Q ss_pred cCCCCceeecccCCCCCCCCccccCcCCCcEEecCCCCeEeCCCccCCCeEEEEEEcCCCChhHHHHHHHHHHhHHHHHh
Q 027527 49 PRRPSHVIASAVSESPPSVSEDTKNLLDTVKVYDVNGNAIPISDLWKDRKAVVAFARHFGCVLCRKRADYLAAKKDVMDA 128 (222)
Q Consensus 49 ~~~~~~~~~~~~s~~~~~~~~~~g~~apdf~L~D~~G~~v~Lsdl~~~~~vvVvF~R~~~Cp~C~~el~~L~~~~~~l~~ 128 (222)
|+++.+.++|.++ +..++...++.-.+ .|..|+.+++.+||+++++||.|+|+++|..||+++.+|.++.+-+++
T Consensus 8 p~t~~~l~~s~i~--pa~sgp~~~q~~a~---l~~rg~~vp~~~L~~~~~avV~~vRrpgCvlCR~~aadLa~l~~~ld~ 82 (197)
T KOG4498|consen 8 PSTRLPLIASTIV--PARSGPMIGQLPAN---LDSRGESVPVTSLFKERSAVVAFVRRPGCVLCREEAADLASLKDLLDE 82 (197)
T ss_pred chhhhhHHHhhcc--cccCCccccccchh---hhhcCceeehHHhhhcCCeEEEEeccCcEEEeHHHHHHHHHHHHHHHH
Confidence 3444455555433 33333444443333 789999999999999999999999999999999999999999999999
Q ss_pred CCCEEEEEcCCCHHHHHHHHHHcCCCCceeecCChHHHHHcCCccccceeeccchhHHHHHHHHHHHHhhhccccccCCc
Q 027527 129 SGVALVLIGPGSVEQARTFSEQTKFKGEVYADPNHSSYEALSFVSGVLVTFTPKAGLKIIQSYMEGYRQDWKLSFERDTV 208 (222)
Q Consensus 129 ~gv~lvaIs~~s~~~i~~f~~~~~~pfpil~Dpd~~lyk~lGl~~~~~~~~~P~a~~~~l~~~~~g~r~~~k~~~~g~~~ 208 (222)
+|+.+|+|++++..+...|+.++++..+||.||++++|+.+++++.....+.|..+...++ +|...++| |+
T Consensus 83 ~Gv~Li~vg~g~~~~~~~f~~q~~f~gevylD~~~~~Y~~le~k~~~~g~l~~g~~~~~~K--------a~~~gv~g-n~ 153 (197)
T KOG4498|consen 83 LGVVLIAVGPGSHVQFEDFWDQTYFSGEVYLDPHRGFYKPLEFKRAEMGFLRPGTDAAAVK--------AKAVGVEG-NL 153 (197)
T ss_pred hCCEEEEEeccceeecchhhcccCcceeEEEcCccceechhhhhcccccccccccHHHHHH--------HhhcccCC-Cc
Confidence 9999999999999999999999999999999999999999999998655554444433332 33344555 78
Q ss_pred cCCceeeCceEEE
Q 027527 209 SRGGWYDTPLFEV 221 (222)
Q Consensus 209 ~g~~~Q~GG~fvv 221 (222)
+|++.|+||.++|
T Consensus 154 ~gd~~~~gG~~~V 166 (197)
T KOG4498|consen 154 EGDGLLSGGVLVV 166 (197)
T ss_pred ccChHHhCCeEEE
Confidence 9999999999987
No 4
>PF00578 AhpC-TSA: AhpC/TSA family; InterPro: IPR000866 Peroxiredoxins (Prxs) are a ubiquitous family of antioxidant enzymes that also control cytokine-induced peroxide levels which mediate signal transduction in mammalian cells. Prxs can be regulated by changes to phosphorylation, redox and possibly oligomerisation states. Prxs are divided into three classes: typical 2-Cys Prxs; atypical 2-Cys Prxs; and 1-Cys Prxs. All Prxs share the same basic catalytic mechanism, in which an active-site cysteine (the peroxidatic cysteine) is oxidised to a sulphenic acid by the peroxide substrate. The recycling of the sulphenic acid back to a thiol is what distinguishes the three enzyme classes. Using crystal structures, a detailed catalytic cycle has been derived for typical 2-Cys Prxs, including a model for the redox-regulated oligomeric state proposed to control enzyme activity []. Alkyl hydroperoxide reductase (AhpC) is responsible for directly reducing organic hyperoxides in its reduced dithiol form. Thiol specific antioxidant (TSA) is a physiologically important antioxidant which constitutes an enzymatic defence against sulphur-containing radicals. This family contains AhpC and TSA, as well as related proteins.; GO: 0016209 antioxidant activity, 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1QMV_A 1PRX_B 3HJP_C 3HA9_A 2V41_G 2V32_C 2V2G_C 3LWA_A 3IA1_B 1ZYE_G ....
Probab=99.86 E-value=6e-21 Score=146.78 Aligned_cols=103 Identities=20% Similarity=0.303 Sum_probs=97.1
Q ss_pred ccCcCCCcEEecCCCCeEeCCCccCCCeEEEEEEcCCCChhHHHHHHHHHHhHHHHHhCCCEEEEEcCCCHHHHHHHHHH
Q 027527 71 TKNLLDTVKVYDVNGNAIPISDLWKDRKAVVAFARHFGCVLCRKRADYLAAKKDVMDASGVALVLIGPGSVEQARTFSEQ 150 (222)
Q Consensus 71 ~g~~apdf~L~D~~G~~v~Lsdl~~~~~vvVvF~R~~~Cp~C~~el~~L~~~~~~l~~~gv~lvaIs~~s~~~i~~f~~~ 150 (222)
+|+++|+|++.|.+|+.++|+++ +++++||+|++..|||.|++++++|+++++++++.|+++++|+.++.+.+++|.++
T Consensus 1 vG~~~P~f~l~~~~g~~~~l~~l-~gk~~vl~f~~~~~c~~c~~~l~~l~~~~~~~~~~~~~vi~is~d~~~~~~~~~~~ 79 (124)
T PF00578_consen 1 VGDKAPDFTLTDSDGKTVSLSDL-KGKPVVLFFWPTAWCPFCQAELPELNELYKKYKDKGVQVIGISTDDPEEIKQFLEE 79 (124)
T ss_dssp TTSBGGCEEEETTTSEEEEGGGG-TTSEEEEEEESTTTSHHHHHHHHHHHHHHHHHHTTTEEEEEEESSSHHHHHHHHHH
T ss_pred CcCCCCCcEeECCCCCEEEHHHH-CCCcEEEEEeCccCccccccchhHHHHHhhhhccceEEeeecccccccchhhhhhh
Confidence 58999999999999999999998 67787777777779999999999999999999999999999999999999999999
Q ss_pred cCCCCceeecCChHHHHHcCCccc
Q 027527 151 TKFKGEVYADPNHSSYEALSFVSG 174 (222)
Q Consensus 151 ~~~pfpil~Dpd~~lyk~lGl~~~ 174 (222)
.+++|++++|+++.+.+.||+...
T Consensus 80 ~~~~~~~~~D~~~~~~~~~~~~~~ 103 (124)
T PF00578_consen 80 YGLPFPVLSDPDGELAKAFGIEDE 103 (124)
T ss_dssp HTCSSEEEEETTSHHHHHTTCEET
T ss_pred hccccccccCcchHHHHHcCCccc
Confidence 999999999999999999999843
No 5
>cd03018 PRX_AhpE_like Peroxiredoxin (PRX) family, AhpE-like subfamily; composed of proteins similar to Mycobacterium tuberculosis AhpE. AhpE is described as a 1-cys PRX because of the absence of a resolving cysteine. The structure and sequence of AhpE, however, show greater similarity to 2-cys PRXs than 1-cys PRXs. PRXs are thiol-specific antioxidant (TSA) proteins that confer a protective role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either thioredoxin, glutathione, trypanothione and AhpF. The first step of catalysis is the nucleophilic attack by the peroxidatic cysteine on the peroxide leading to the formation of a cysteine sulfenic acid intermediate. The absence of a resolving cysteine suggests that functional AhpE is regenerated by an external reductant. The solution behavior and crystal structure of AhpE show that it forms dimers and octamers.
Probab=99.83 E-value=5e-20 Score=146.53 Aligned_cols=104 Identities=16% Similarity=0.200 Sum_probs=97.3
Q ss_pred cccCcCCCcEEecCCCCeEeCCCccCCCeEEEEEEcCCCChhHHHHHHHHHHhHHHHHhCCCEEEEEcCCCHHHHHHHHH
Q 027527 70 DTKNLLDTVKVYDVNGNAIPISDLWKDRKAVVAFARHFGCVLCRKRADYLAAKKDVMDASGVALVLIGPGSVEQARTFSE 149 (222)
Q Consensus 70 ~~g~~apdf~L~D~~G~~v~Lsdl~~~~~vvVvF~R~~~Cp~C~~el~~L~~~~~~l~~~gv~lvaIs~~s~~~i~~f~~ 149 (222)
++|+.+|+|.+.|.+|+.++|+++.+++++||+|+|+.|||.|.++++.|+++++++++.|+++|+|+.++++.+++|.+
T Consensus 2 ~~G~~~p~~~l~~~~g~~v~l~~~~g~k~~vl~f~~~~~c~~C~~~~~~l~~~~~~~~~~~v~vi~vs~d~~~~~~~~~~ 81 (149)
T cd03018 2 EVGDKAPDFELPDQNGQEVRLSEFRGRKPVVLVFFPLAFTPVCTKELCALRDSLELFEAAGAEVLGISVDSPFSLRAWAE 81 (149)
T ss_pred CCCCcCCCcEecCCCCCEEeHHHHcCCCeEEEEEeCCCCCccHHHHHHHHHHHHHHHHhCCCEEEEecCCCHHHHHHHHH
Confidence 57999999999999999999999854377888888999999999999999999999999999999999999999999999
Q ss_pred HcCCCCceeecCC--hHHHHHcCCcc
Q 027527 150 QTKFKGEVYADPN--HSSYEALSFVS 173 (222)
Q Consensus 150 ~~~~pfpil~Dpd--~~lyk~lGl~~ 173 (222)
+++++|++++|++ +++++.||+..
T Consensus 82 ~~~~~~~~~~D~~~~~~~~~~~g~~~ 107 (149)
T cd03018 82 ENGLTFPLLSDFWPHGEVAKAYGVFD 107 (149)
T ss_pred hcCCCceEecCCCchhHHHHHhCCcc
Confidence 9999999999988 99999999874
No 6
>cd03013 PRX5_like Peroxiredoxin (PRX) family, PRX5-like subfamily; members are similar to the human protein, PRX5, a homodimeric TRX peroxidase, widely expressed in tissues and found cellularly in mitochondria, peroxisomes and the cytosol. The cellular location of PRX5 suggests that it may have an important antioxidant role in organelles that are major sources of reactive oxygen species (ROS), as well as a role in the control of signal transduction. PRX5 has been shown to reduce hydrogen peroxide, alkyl hydroperoxides and peroxynitrite. As with all other PRXs, the N-terminal peroxidatic cysteine of PRX5 is oxidized into a sulfenic acid intermediate upon reaction with peroxides. Human PRX5 is able to resolve this intermediate by forming an intramolecular disulfide bond with its C-terminal cysteine (the resolving cysteine), which can then be reduced by TRX, just like an atypical 2-cys PRX. This resolving cysteine, however, is not conserved in other members of the subfamily. In such cases
Probab=99.81 E-value=7.3e-20 Score=149.21 Aligned_cols=104 Identities=18% Similarity=0.212 Sum_probs=97.8
Q ss_pred ccCcCCCcEEecCC---CCeEeCCCccCCCeEEEEEEcCCCChhHHHH-HHHHHHhHHHHHhCCC-EEEEEcCCCHHHHH
Q 027527 71 TKNLLDTVKVYDVN---GNAIPISDLWKDRKAVVAFARHFGCVLCRKR-ADYLAAKKDVMDASGV-ALVLIGPGSVEQAR 145 (222)
Q Consensus 71 ~g~~apdf~L~D~~---G~~v~Lsdl~~~~~vvVvF~R~~~Cp~C~~e-l~~L~~~~~~l~~~gv-~lvaIs~~s~~~i~ 145 (222)
+|+++|+|++.+.+ |+.++|+++++++++||+||++.|||.|..| ++.|++.+++|++.|+ .|++|+.+++...+
T Consensus 1 vG~~aPdF~l~~~~~~~g~~v~L~~~~~gk~vvl~fyP~~~tp~Ct~e~~~~~~~~~~~f~~~g~~~V~~iS~D~~~~~~ 80 (155)
T cd03013 1 VGDKLPNVTLFEYVPGPPNPVNLSELFKGKKVVIFGVPGAFTPTCSAQHLPGYVENADELKAKGVDEVICVSVNDPFVMK 80 (155)
T ss_pred CCCcCCCeEeeeeccCCCceeeHHHHhCCCcEEEEEeCCCCCCCCchhHHHHHHHhHHHHHHCCCCEEEEEECCCHHHHH
Confidence 58999999999985 9999999966678999999999999999999 9999999999999999 69999999999999
Q ss_pred HHHHHcCC--CCceeecCChHHHHHcCCccc
Q 027527 146 TFSEQTKF--KGEVYADPNHSSYEALSFVSG 174 (222)
Q Consensus 146 ~f~~~~~~--pfpil~Dpd~~lyk~lGl~~~ 174 (222)
+|+++.++ +|++++|+++++.++||+...
T Consensus 81 ~~~~~~~~~~~f~lLsD~~~~~~~~ygv~~~ 111 (155)
T cd03013 81 AWGKALGAKDKIRFLADGNGEFTKALGLTLD 111 (155)
T ss_pred HHHHhhCCCCcEEEEECCCHHHHHHcCCCcc
Confidence 99999998 899999999999999999644
No 7
>cd03017 PRX_BCP Peroxiredoxin (PRX) family, Bacterioferritin comigratory protein (BCP) subfamily; composed of thioredoxin-dependent thiol peroxidases, widely expressed in pathogenic bacteria, that protect cells against toxicity from reactive oxygen species by reducing and detoxifying hydroperoxides. The protein was named BCP based on its electrophoretic mobility before its function was known. BCP shows substrate selectivity toward fatty acid hydroperoxides rather than hydrogen peroxide or alkyl hydroperoxides. BCP contains the peroxidatic cysteine but appears not to possess a resolving cysteine (some sequences, not all, contain a second cysteine but its role is still unknown). Unlike other PRXs, BCP exists as a monomer. The plant homolog of BCP is PRX Q, which is expressed only in leaves and is cellularly localized in the chloroplasts and the guard cells of stomata. Also included in this subfamily is the fungal nuclear protein, Dot5p (for disrupter of telomere silencing protein 5), w
Probab=99.80 E-value=5.7e-19 Score=138.83 Aligned_cols=101 Identities=21% Similarity=0.271 Sum_probs=93.7
Q ss_pred CcCCCcEEecCCCCeEeCCCccCCCeEEEEEEcCCCChhHHHHHHHHHHhHHHHHhCCCEEEEEcCCCHHHHHHHHHHcC
Q 027527 73 NLLDTVKVYDVNGNAIPISDLWKDRKAVVAFARHFGCVLCRKRADYLAAKKDVMDASGVALVLIGPGSVEQARTFSEQTK 152 (222)
Q Consensus 73 ~~apdf~L~D~~G~~v~Lsdl~~~~~vvVvF~R~~~Cp~C~~el~~L~~~~~~l~~~gv~lvaIs~~s~~~i~~f~~~~~ 152 (222)
+.+|+|++.|.+|+.++++++. ++++||.|++..|||.|.++++.|+++++++++.|+++|+|+.++++.+++|+++++
T Consensus 1 ~~~p~f~l~~~~g~~~~l~~~~-gk~~ll~f~~~~~cp~C~~~~~~l~~~~~~~~~~~~~vv~is~d~~~~~~~~~~~~~ 79 (140)
T cd03017 1 DKAPDFTLPDQDGETVSLSDLR-GKPVVLYFYPKDDTPGCTKEACDFRDLYEEFKALGAVVIGVSPDSVESHAKFAEKYG 79 (140)
T ss_pred CCCCCccccCCCCCEEeHHHhC-CCcEEEEEeCCCCCCchHHHHHHHHHHHHHHHHCCCEEEEEcCCCHHHHHHHHHHhC
Confidence 5789999999999999999974 667777666689999999999999999999999999999999999999999999999
Q ss_pred CCCceeecCChHHHHHcCCccc
Q 027527 153 FKGEVYADPNHSSYEALSFVSG 174 (222)
Q Consensus 153 ~pfpil~Dpd~~lyk~lGl~~~ 174 (222)
++|++++|+++++++.||+...
T Consensus 80 ~~~~~l~D~~~~~~~~~gv~~~ 101 (140)
T cd03017 80 LPFPLLSDPDGKLAKAYGVWGE 101 (140)
T ss_pred CCceEEECCccHHHHHhCCccc
Confidence 9999999999999999998765
No 8
>PF08534 Redoxin: Redoxin; InterPro: IPR013740 This redoxin domain is found in peroxiredoxin, thioredoxin and glutaredoxin proteins. Peroxiredoxins (Prxs) constitute a family of thiol peroxidases that reduce hydrogen peroxide, peroxinitrite, and hydroperoxides using a strictly conserved cysteine []. Chloroplast thioredoxin systems in plants regulate the enzymes involved in photosynthetic carbon assimilation []. It is thought that redoxins have a large role to play in anti-oxidant defence. Cadmium-sensitive proteins are also regulated via thioredoxin and glutaredoxin thiol redox systems [].; GO: 0016491 oxidoreductase activity; PDB: 2H30_A 1TP9_A 1Y25_A 1XVQ_A 2B1K_A 2G0F_A 2B1L_B 3K8N_A 1Z5Y_E 3OR5_A ....
Probab=99.79 E-value=7.8e-19 Score=139.55 Aligned_cols=101 Identities=23% Similarity=0.343 Sum_probs=89.9
Q ss_pred cccCcCCCcEEec--CCCCeEeCCCccCCCeEEEEEEcCC-CChhHHHHHHHHHHhHHHHHhCCCEEEEEcCCCHHHHHH
Q 027527 70 DTKNLLDTVKVYD--VNGNAIPISDLWKDRKAVVAFARHF-GCVLCRKRADYLAAKKDVMDASGVALVLIGPGSVEQART 146 (222)
Q Consensus 70 ~~g~~apdf~L~D--~~G~~v~Lsdl~~~~~vvVvF~R~~-~Cp~C~~el~~L~~~~~~l~~~gv~lvaIs~~s~~~i~~ 146 (222)
++|+++|+|++.| .+|+.++|+++ ++++ +|++||+. |||+|+++++.|+++++++.+.|+.+|+|..++...+++
T Consensus 1 k~G~~~P~~~~~~~~~~g~~~~l~~~-~gk~-~vv~f~~~~~Cp~C~~~~p~l~~l~~~~~~~~v~~v~v~~~~~~~~~~ 78 (146)
T PF08534_consen 1 KVGDKAPDFSLKDLDLDGKPVSLSDF-KGKP-VVVNFWASAWCPPCRKELPYLNELQEKYKDKGVDVVGVSSDDDPPVRE 78 (146)
T ss_dssp STTSB--CCEEEEEETTSEEEEGGGG-TTSE-EEEEEESTTTSHHHHHHHHHHHHHHHHHHTTTCEEEEEEESSSHHHHH
T ss_pred CCCCCCCCeEEEeecCCCCEecHHHh-CCCe-EEEEEEccCCCCcchhhhhhHHhhhhhhccCceEEEEecccCCHHHHH
Confidence 4799999999966 99999999995 4554 66666777 999999999999999999999999999999998877999
Q ss_pred HHHHcCCCCceeecCChHHHHHcCCc
Q 027527 147 FSEQTKFKGEVYADPNHSSYEALSFV 172 (222)
Q Consensus 147 f~~~~~~pfpil~Dpd~~lyk~lGl~ 172 (222)
|+++++++|+++.|++..+.++||+.
T Consensus 79 ~~~~~~~~~~~~~D~~~~~~~~~~~~ 104 (146)
T PF08534_consen 79 FLKKYGINFPVLSDPDGALAKALGVT 104 (146)
T ss_dssp HHHHTTTTSEEEEETTSHHHHHTTCE
T ss_pred HHHhhCCCceEEechHHHHHHHhCCc
Confidence 99999999999999999999999987
No 9
>PRK09437 bcp thioredoxin-dependent thiol peroxidase; Reviewed
Probab=99.79 E-value=9.3e-19 Score=140.84 Aligned_cols=106 Identities=17% Similarity=0.258 Sum_probs=96.2
Q ss_pred CCccccCcCCCcEEecCCCCeEeCCCccCCCeEEEEEEcCCCChhHHHHHHHHHHhHHHHHhCCCEEEEEcCCCHHHHHH
Q 027527 67 VSEDTKNLLDTVKVYDVNGNAIPISDLWKDRKAVVAFARHFGCVLCRKRADYLAAKKDVMDASGVALVLIGPGSVEQART 146 (222)
Q Consensus 67 ~~~~~g~~apdf~L~D~~G~~v~Lsdl~~~~~vvVvF~R~~~Cp~C~~el~~L~~~~~~l~~~gv~lvaIs~~s~~~i~~ 146 (222)
....+|+.+|+|++.|.+|+.++|+++ +++++||.|++..|||.|+.+++.|+++++++++.|+++|+|+.|+.+.+++
T Consensus 2 ~~~~~g~~~p~f~l~~~~G~~~~l~~~-~gk~~ll~f~~~~~~p~C~~~~~~l~~~~~~~~~~~v~vi~Is~d~~~~~~~ 80 (154)
T PRK09437 2 NPLKAGDIAPKFSLPDQDGEQVSLTDF-QGQRVLVYFYPKAMTPGCTVQACGLRDNMDELKKAGVVVLGISTDKPEKLSR 80 (154)
T ss_pred CcCCCCCcCCCcEeeCCCCCEEeHHHh-CCCCEEEEEECCCCCCchHHHHHHHHHHHHHHHHCCCEEEEEcCCCHHHHHH
Confidence 456789999999999999999999996 5666666665567899999999999999999999999999999999999999
Q ss_pred HHHHcCCCCceeecCChHHHHHcCCcc
Q 027527 147 FSEQTKFKGEVYADPNHSSYEALSFVS 173 (222)
Q Consensus 147 f~~~~~~pfpil~Dpd~~lyk~lGl~~ 173 (222)
|+++++++|+++.|+++.+.++||+..
T Consensus 81 ~~~~~~~~~~~l~D~~~~~~~~~gv~~ 107 (154)
T PRK09437 81 FAEKELLNFTLLSDEDHQVAEQFGVWG 107 (154)
T ss_pred HHHHhCCCCeEEECCCchHHHHhCCCc
Confidence 999999999999999999999999853
No 10
>cd03016 PRX_1cys Peroxiredoxin (PRX) family, 1-cys PRX subfamily; composed of PRXs containing only one conserved cysteine, which serves as the peroxidatic cysteine. They are homodimeric thiol-specific antioxidant (TSA) proteins that confer a protective role in cells by reducing and detoxifying hydrogen peroxide, peroxynitrite, and organic hydroperoxides. As with all other PRXs, a cysteine sulfenic acid intermediate is formed upon reaction of 1-cys PRX with its substrates. Having no resolving cysteine, the oxidized enzyme is resolved by an external small-molecule or protein reductant such as thioredoxin or glutaredoxin. Similar to typical 2-cys PRX, 1-cys PRX forms a functional dimeric unit with a B-type interface, as well as a decameric structure which is stabilized in the reduced form of the enzyme. Other oligomeric forms, tetramers and hexamers, have also been reported. Mammalian 1-cys PRX is localized cellularly in the cytosol and is expressed at high levels in brain, eye, testes an
Probab=99.79 E-value=5.3e-19 Score=149.92 Aligned_cols=102 Identities=16% Similarity=0.165 Sum_probs=92.6
Q ss_pred ccCcCCCcEEecCCCCeEeCCCccCCCeEEEEEEcCCCChhHHHHHHHHHHhHHHHHhCCCEEEEEcCCCHHHHHHHHHH
Q 027527 71 TKNLLDTVKVYDVNGNAIPISDLWKDRKAVVAFARHFGCVLCRKRADYLAAKKDVMDASGVALVLIGPGSVEQARTFSEQ 150 (222)
Q Consensus 71 ~g~~apdf~L~D~~G~~v~Lsdl~~~~~vvVvF~R~~~Cp~C~~el~~L~~~~~~l~~~gv~lvaIs~~s~~~i~~f~~~ 150 (222)
+|+.+|+|++.|.+|+ ++|+++.+++++||+|||+.|||.|..|++.|++++++|++.|++|++|+.++.+..++|.++
T Consensus 1 vG~~aP~F~~~~~~g~-~~l~d~~g~k~vvlf~~pa~~cp~C~~el~~l~~~~~~f~~~gv~vigvS~D~~~~~~~~~~~ 79 (203)
T cd03016 1 LGDTAPNFEADTTHGP-IKFHDYLGDSWGILFSHPADFTPVCTTELGAFAKLAPEFKKRNVKLIGLSVDSVESHIKWIED 79 (203)
T ss_pred CcCCCCCeEEecCCCc-EeHHHHcCCCEEEEEEecCCCCCcCHHHHHHHHHHHHHHHHcCCEEEEEECCCHHHHHHHHhh
Confidence 4899999999999984 899998544678899999999999999999999999999999999999999999877777765
Q ss_pred ------cCCCCceeecCChHHHHHcCCcc
Q 027527 151 ------TKFKGEVYADPNHSSYEALSFVS 173 (222)
Q Consensus 151 ------~~~pfpil~Dpd~~lyk~lGl~~ 173 (222)
.+++||+++|+++.++++||+..
T Consensus 80 i~~~~~~~~~fpil~D~~~~ia~~yg~~~ 108 (203)
T cd03016 80 IEEYTGVEIPFPIIADPDREVAKLLGMID 108 (203)
T ss_pred HHHhcCCCCceeEEECchHHHHHHcCCcc
Confidence 68999999999999999999863
No 11
>cd02971 PRX_family Peroxiredoxin (PRX) family; composed of the different classes of PRXs including many proteins originally known as bacterioferritin comigratory proteins (BCP), based on their electrophoretic mobility before their function was identified. PRXs are thiol-specific antioxidant (TSA) proteins also known as TRX peroxidases and alkyl hydroperoxide reductase C22 (AhpC) proteins. They confer a protective antioxidant role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either TRX, glutathione, trypanothione and AhpF. They are distinct from other peroxidases in that they have no cofactors such as metals or prosthetic groups. The first step of catalysis, common to all PRXs, is the nucleophilic attack by the catalytic cysteine (also known as the peroxidatic cysteine) on the peroxide leading to cleavage of the oxygen-oxygen bond and the formation of a
Probab=99.78 E-value=1.7e-18 Score=135.92 Aligned_cols=101 Identities=13% Similarity=0.167 Sum_probs=94.4
Q ss_pred cCCCcEEecCCCCeEeCCCccCCCeEEEEEEcCCCChhHHHHHHHHHHhHHHHHhCCCEEEEEcCCCHHHHHHHHHHc-C
Q 027527 74 LLDTVKVYDVNGNAIPISDLWKDRKAVVAFARHFGCVLCRKRADYLAAKKDVMDASGVALVLIGPGSVEQARTFSEQT-K 152 (222)
Q Consensus 74 ~apdf~L~D~~G~~v~Lsdl~~~~~vvVvF~R~~~Cp~C~~el~~L~~~~~~l~~~gv~lvaIs~~s~~~i~~f~~~~-~ 152 (222)
++|+|++.|.+|+.++|+++ +++++||+|++..||+.|..+++.|+++++++++.|+.+|+|+.++++.+++|++++ +
T Consensus 1 ~~p~f~l~~~~g~~~~l~~~-~gk~~ll~f~~~~~c~~C~~~~~~l~~~~~~~~~~~~~~i~is~d~~~~~~~~~~~~~~ 79 (140)
T cd02971 1 KAPDFTLPATDGGEVSLSDF-KGKWVVLFFYPKDFTPVCTTELCAFRDLAEEFAKGGAEVLGVSVDSPFSHKAWAEKEGG 79 (140)
T ss_pred CCCCceeccCCCcEEehHHh-CCCeEEEEEeCCCCCCcCHHHHHHHHHHHHHHHHCCCEEEEEeCCCHHHHHHHHhcccC
Confidence 47999999999999999998 577788888889999999999999999999999999999999999999999999999 9
Q ss_pred CCCceeecCChHHHHHcCCcccc
Q 027527 153 FKGEVYADPNHSSYEALSFVSGV 175 (222)
Q Consensus 153 ~pfpil~Dpd~~lyk~lGl~~~~ 175 (222)
.+|++++|+++.+++.||+....
T Consensus 80 ~~~~~l~D~~~~~~~~~g~~~~~ 102 (140)
T cd02971 80 LNFPLLSDPDGEFAKAYGVLIEK 102 (140)
T ss_pred CCceEEECCChHHHHHcCCcccc
Confidence 99999999999999999998665
No 12
>TIGR03137 AhpC peroxiredoxin. This gene contains two invariant cysteine residues, one near the N-terminus and one near the C-terminus, each followed immediately by a proline residue.
Probab=99.78 E-value=1.1e-18 Score=146.10 Aligned_cols=102 Identities=16% Similarity=0.192 Sum_probs=91.8
Q ss_pred cccCcCCCcEEec-CCCC--eEeCCCccCCCeEEEEEEcCCCChhHHHHHHHHHHhHHHHHhCCCEEEEEcCCCHHHHHH
Q 027527 70 DTKNLLDTVKVYD-VNGN--AIPISDLWKDRKAVVAFARHFGCVLCRKRADYLAAKKDVMDASGVALVLIGPGSVEQART 146 (222)
Q Consensus 70 ~~g~~apdf~L~D-~~G~--~v~Lsdl~~~~~vvVvF~R~~~Cp~C~~el~~L~~~~~~l~~~gv~lvaIs~~s~~~i~~ 146 (222)
.+|+.+|+|++.| .+|+ .++++++ +++++||.|+++.|||.|+.|+++|++.+++|++.|++||+|+.++++..++
T Consensus 3 ~~G~~aP~f~l~~~~~g~~~~~sl~d~-~Gk~vvl~F~p~~~cp~C~~el~~l~~~~~~~~~~gv~vi~VS~D~~~~~~~ 81 (187)
T TIGR03137 3 LINTEIKPFKATAYHNGEFVEVTDEDV-KGKWSVFFFYPADFTFVCPTELEDLADKYAELKKLGVEVYSVSTDTHFVHKA 81 (187)
T ss_pred ccCCcCCCcEeeeccCCceeEecHHHH-CCCEEEEEEECCCcCCcCHHHHHHHHHHHHHHHhcCCcEEEEeCCCHHHHHH
Confidence 5799999999999 6787 6778886 5677888888899999999999999999999999999999999999988888
Q ss_pred HHHHc----CCCCceeecCChHHHHHcCCc
Q 027527 147 FSEQT----KFKGEVYADPNHSSYEALSFV 172 (222)
Q Consensus 147 f~~~~----~~pfpil~Dpd~~lyk~lGl~ 172 (222)
|++.. +++||+++|+++++.+.||+.
T Consensus 82 ~~~~~~~~~~l~fpllsD~~~~~a~~~gv~ 111 (187)
T TIGR03137 82 WHDTSEAIGKITYPMLGDPTGVLTRNFGVL 111 (187)
T ss_pred HHhhhhhccCcceeEEECCccHHHHHhCCc
Confidence 88764 689999999999999999986
No 13
>PRK13599 putative peroxiredoxin; Provisional
Probab=99.77 E-value=1.8e-18 Score=148.44 Aligned_cols=102 Identities=14% Similarity=0.035 Sum_probs=92.1
Q ss_pred cccCcCCCcEEecCCCCeEeCCCccCCCeEEEEEEcCCCChhHHHHHHHHHHhHHHHHhCCCEEEEEcCCCHHHHHHHHH
Q 027527 70 DTKNLLDTVKVYDVNGNAIPISDLWKDRKAVVAFARHFGCVLCRKRADYLAAKKDVMDASGVALVLIGPGSVEQARTFSE 149 (222)
Q Consensus 70 ~~g~~apdf~L~D~~G~~v~Lsdl~~~~~vvVvF~R~~~Cp~C~~el~~L~~~~~~l~~~gv~lvaIs~~s~~~i~~f~~ 149 (222)
.+|+++|+|++.+.+|+.+.++++ +++++||+|||+.|||.|..|++.|++++++|+++|++||+|+.|+.+..++|++
T Consensus 3 ~~Gd~aPdF~l~t~~G~~~~~~~~-~Gk~vVL~~~pa~~tpvCt~El~~l~~~~~~f~~~gv~vigIS~D~~~~~~~w~~ 81 (215)
T PRK13599 3 LLGEKFPSMEVVTTQGVKRLPEDY-AGKWFVLFSHPADFTPVCTTEFVEFARKANDFKELNTELIGLSVDQVFSHIKWVE 81 (215)
T ss_pred CCCCCCCCCEeECCCCcEecHHHH-CCCeEEEEEeCCCCCCcCHHHHHHHHHHHHHHHHCCCEEEEEeCCCHHHHHHHHH
Confidence 579999999999999998777775 5778889999999999999999999999999999999999999999977766654
Q ss_pred ------HcCCCCceeecCChHHHHHcCCc
Q 027527 150 ------QTKFKGEVYADPNHSSYEALSFV 172 (222)
Q Consensus 150 ------~~~~pfpil~Dpd~~lyk~lGl~ 172 (222)
..+++|||++|+++++.++||+.
T Consensus 82 ~i~~~~~~~i~fPil~D~~~~va~~yg~~ 110 (215)
T PRK13599 82 WIKDNTNIAIPFPVIADDLGKVSNQLGMI 110 (215)
T ss_pred hHHHhcCCCCceeEEECCCchHHHHcCCC
Confidence 34789999999999999999984
No 14
>PRK13190 putative peroxiredoxin; Provisional
Probab=99.77 E-value=2e-18 Score=146.46 Aligned_cols=102 Identities=15% Similarity=0.103 Sum_probs=90.6
Q ss_pred ccccCcCCCcEEecCCCCeEeCCCccCCCeEEEEEEcCCCChhHHHHHHHHHHhHHHHHhCCCEEEEEcCCCHHHHHHHH
Q 027527 69 EDTKNLLDTVKVYDVNGNAIPISDLWKDRKAVVAFARHFGCVLCRKRADYLAAKKDVMDASGVALVLIGPGSVEQARTFS 148 (222)
Q Consensus 69 ~~~g~~apdf~L~D~~G~~v~Lsdl~~~~~vvVvF~R~~~Cp~C~~el~~L~~~~~~l~~~gv~lvaIs~~s~~~i~~f~ 148 (222)
..+|+.+|+|++.|.+| .++|+++ +++++||+|||+.|||.|..|+++|++++++|++.|++|++|+.++.+..++|+
T Consensus 2 ~~vG~~aP~F~~~~~~g-~v~l~d~-~gk~vvL~~~p~~~cp~C~~El~~l~~~~~~f~~~~~~vi~vS~D~~~~~~~w~ 79 (202)
T PRK13190 2 VKLGQKAPDFTVNTTKG-PIDLSKY-KGKWVLLFSHPADFTPVCTTEFIAFSRRYEDFKKLGVELVGLSVDSIYSHIAWL 79 (202)
T ss_pred CCCCCCCCCcEEecCCC-cEeHHHh-CCCEEEEEEEcCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCCHHHHHHHH
Confidence 46799999999999888 6999996 577788889999999999999999999999999999999999999987655554
Q ss_pred ----HHcC--CCCceeecCChHHHHHcCCc
Q 027527 149 ----EQTK--FKGEVYADPNHSSYEALSFV 172 (222)
Q Consensus 149 ----~~~~--~pfpil~Dpd~~lyk~lGl~ 172 (222)
++.+ ++||+++|+++.+.++||+.
T Consensus 80 ~~~~~~~g~~~~fPll~D~~~~ia~~ygv~ 109 (202)
T PRK13190 80 RDIEERFGIKIPFPVIADIDKELAREYNLI 109 (202)
T ss_pred HhHHHhcCCCceEEEEECCChHHHHHcCCc
Confidence 4555 68999999999999999984
No 15
>PF13911 AhpC-TSA_2: AhpC/TSA antioxidant enzyme
Probab=99.77 E-value=3.5e-18 Score=131.95 Aligned_cols=99 Identities=28% Similarity=0.384 Sum_probs=81.1
Q ss_pred HHHhHHHHHhCCCEEEEEcCCCHHHHHHHHHHcCCCCceeecCChHHHHHcCCccccceeeccchhHHHHHHHHHHHHhh
Q 027527 119 LAAKKDVMDASGVALVLIGPGSVEQARTFSEQTKFKGEVYADPNHSSYEALSFVSGVLVTFTPKAGLKIIQSYMEGYRQD 198 (222)
Q Consensus 119 L~~~~~~l~~~gv~lvaIs~~s~~~i~~f~~~~~~pfpil~Dpd~~lyk~lGl~~~~~~~~~P~a~~~~l~~~~~g~r~~ 198 (222)
|++..++|++.||++|+|++++++.+++|++.+++|++||+||++++|++||+.++....+.|...+..+. +.++..
T Consensus 2 L~~~~~~l~~~gv~lv~I~~g~~~~~~~f~~~~~~p~~ly~D~~~~lY~~lg~~~~~~~~~~~~~~~~~~~---~~~~~~ 78 (115)
T PF13911_consen 2 LSRRKPELEAAGVKLVVIGCGSPEGIEKFCELTGFPFPLYVDPERKLYKALGLKRGLKWSLLPPALWSGLS---NIVQSA 78 (115)
T ss_pred hhHhHHHHHHcCCeEEEEEcCCHHHHHHHHhccCCCCcEEEeCcHHHHHHhCCccccccCCCchHHHHHHH---HHHHHH
Confidence 67788999999999999999999889999999999999999999999999999998777776554444443 233344
Q ss_pred hccccccCCc-cCCceeeCceEEE
Q 027527 199 WKLSFERDTV-SRGGWYDTPLFEV 221 (222)
Q Consensus 199 ~k~~~~g~~~-~g~~~Q~GG~fvv 221 (222)
++..+.+ +. +|+++|+||+|||
T Consensus 79 ~~~~~~~-~~~~g~~~q~GG~fv~ 101 (115)
T PF13911_consen 79 KNGGIPG-NKDQGDGWQLGGTFVF 101 (115)
T ss_pred HHcCCCC-cccCCCceecCeEEEE
Confidence 4444555 34 7889999999998
No 16
>PRK13191 putative peroxiredoxin; Provisional
Probab=99.76 E-value=3.3e-18 Score=146.70 Aligned_cols=103 Identities=16% Similarity=0.117 Sum_probs=91.3
Q ss_pred ccccCcCCCcEEecCCCCeEeCCCccCCCeEEEEEEcCCCChhHHHHHHHHHHhHHHHHhCCCEEEEEcCCCHHHHHHHH
Q 027527 69 EDTKNLLDTVKVYDVNGNAIPISDLWKDRKAVVAFARHFGCVLCRKRADYLAAKKDVMDASGVALVLIGPGSVEQARTFS 148 (222)
Q Consensus 69 ~~~g~~apdf~L~D~~G~~v~Lsdl~~~~~vvVvF~R~~~Cp~C~~el~~L~~~~~~l~~~gv~lvaIs~~s~~~i~~f~ 148 (222)
..+|+.+|||++.+.+|+ +.+.+.++++++||+|||+.|||.|..|+++|++++++|+++|++|++|+.|+....++|+
T Consensus 7 ~~iG~~aPdF~l~~~~G~-~~l~~~~~GK~vvLff~pa~ftpvC~tEl~~l~~~~~ef~~~g~~VigvS~Ds~~~h~aw~ 85 (215)
T PRK13191 7 PLIGEKFPEMEVITTHGK-IKLPDDYKGRWFVLFSHPGDFTPVCTTEFYSFAKKYEEFKKLNTELIGLSVDSNISHIEWV 85 (215)
T ss_pred ccCCCcCCCCEeecCCCC-EEcHHHhCCCcEEEEEeCCCCCCcCHHHHHHHHHHHHHHHHCCCEEEEEECCCHHHHHHHH
Confidence 468999999999999997 5666645677888899999999999999999999999999999999999999998776665
Q ss_pred H------HcCCCCceeecCChHHHHHcCCc
Q 027527 149 E------QTKFKGEVYADPNHSSYEALSFV 172 (222)
Q Consensus 149 ~------~~~~pfpil~Dpd~~lyk~lGl~ 172 (222)
+ ..+++||+++|+++++.++||+.
T Consensus 86 ~~~~~~~~~~i~fPllsD~~~~ia~~ygv~ 115 (215)
T PRK13191 86 MWIEKNLKVEVPFPIIADPMGNVAKRLGMI 115 (215)
T ss_pred hhHHHhcCCCCceEEEECCchHHHHHcCCc
Confidence 4 24688999999999999999985
No 17
>PTZ00137 2-Cys peroxiredoxin; Provisional
Probab=99.76 E-value=3.4e-18 Score=150.63 Aligned_cols=109 Identities=15% Similarity=0.184 Sum_probs=96.2
Q ss_pred CCCCccccCcCCCcEEec-CCC--CeEeCCCccCCCeEEEEEEcCCCChhHHHHHHHHHHhHHHHHhCCCEEEEEcCCCH
Q 027527 65 PSVSEDTKNLLDTVKVYD-VNG--NAIPISDLWKDRKAVVAFARHFGCVLCRKRADYLAAKKDVMDASGVALVLIGPGSV 141 (222)
Q Consensus 65 ~~~~~~~g~~apdf~L~D-~~G--~~v~Lsdl~~~~~vvVvF~R~~~Cp~C~~el~~L~~~~~~l~~~gv~lvaIs~~s~ 141 (222)
......+|+++|||++.| .+| +.++|+++.+++++||+|+|+.|||.|..|++.|++.+++|++.|++|++|+.|++
T Consensus 64 ~~~~~~vGd~aPdF~l~~~~~g~~~~vsLsd~~kgk~vVL~FyPa~ftpvCt~El~~l~~~~~ef~~~gv~VigIS~Ds~ 143 (261)
T PTZ00137 64 TVTSSLVGKLMPSFKGTALLNDDLVQFNSSDYFKDSYGLLVFYPLDFTFVCPSELLGFSERLKEFEERGVKVLGVSVDSP 143 (261)
T ss_pred ccccccCCCCCCCCEeecccCCCceEEeHHHHcCCCeEEEEEECCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEECCCH
Confidence 334457999999999987 455 46899998778899999999999999999999999999999999999999999998
Q ss_pred HHHHHHHHH-------cCCCCceeecCChHHHHHcCCcc
Q 027527 142 EQARTFSEQ-------TKFKGEVYADPNHSSYEALSFVS 173 (222)
Q Consensus 142 ~~i~~f~~~-------~~~pfpil~Dpd~~lyk~lGl~~ 173 (222)
...++|++. .+++||+++|+++++.++||+..
T Consensus 144 ~~h~aw~~~~~~~~g~~~l~fPlLsD~~~~iakayGv~~ 182 (261)
T PTZ00137 144 FSHKAWKELDVRQGGVSPLKFPLFSDISREVSKSFGLLR 182 (261)
T ss_pred HHHHHHHhhhhhhccccCcceEEEEcCChHHHHHcCCCC
Confidence 777777763 57899999999999999999853
No 18
>cd03015 PRX_Typ2cys Peroxiredoxin (PRX) family, Typical 2-Cys PRX subfamily; PRXs are thiol-specific antioxidant (TSA) proteins, which confer a protective role in cells through its peroxidase activity by reducing hydrogen peroxide, peroxynitrite, and organic hydroperoxides. The functional unit of typical 2-cys PRX is a homodimer. A unique intermolecular redox-active disulfide center is utilized for its activity. Upon reaction with peroxides, its peroxidatic cysteine is oxidized into a sulfenic acid intermediate which is resolved by bonding with the resolving cysteine from the other subunit of the homodimer. This intermolecular disulfide bond is then reduced by thioredoxin, tryparedoxin or AhpF. Typical 2-cys PRXs, like 1-cys PRXs, form decamers which are stabilized by reduction of the active site cysteine. Typical 2-cys PRX interacts through beta strands at one edge of the monomer (B-type interface) to form the functional homodimer, and uses an A-type interface (similar to the dimeric
Probab=99.76 E-value=6.7e-18 Score=139.06 Aligned_cols=101 Identities=14% Similarity=0.119 Sum_probs=91.1
Q ss_pred ccCcCCCcEEecCCC----CeEeCCCccCCCeEEEEEEcCCCChhHHHHHHHHHHhHHHHHhCCCEEEEEcCCCHHHHHH
Q 027527 71 TKNLLDTVKVYDVNG----NAIPISDLWKDRKAVVAFARHFGCVLCRKRADYLAAKKDVMDASGVALVLIGPGSVEQART 146 (222)
Q Consensus 71 ~g~~apdf~L~D~~G----~~v~Lsdl~~~~~vvVvF~R~~~Cp~C~~el~~L~~~~~~l~~~gv~lvaIs~~s~~~i~~ 146 (222)
+|+++|+|++.|.+| +.++|+++ +++++||.|+++.|||.|..+++.|++++++|.+.|+.+++|+.++.+..++
T Consensus 1 vG~~aP~f~~~~~~g~~~~~~~~l~~~-~Gk~vvl~F~~~~~c~~C~~~l~~l~~~~~~~~~~~v~vv~Is~d~~~~~~~ 79 (173)
T cd03015 1 VGKKAPDFKATAVVPNGEFKEISLSDY-KGKWVVLFFYPLDFTFVCPTEIIAFSDRYEEFKKLNAEVLGVSTDSHFSHLA 79 (173)
T ss_pred CCCcCCCCEeecccCCCCceEEehHHh-CCCEEEEEEECCCCCCcCHHHHHHHHHHHHHHHHCCCEEEEEecCCHHHHHH
Confidence 589999999999887 79999997 4677777777799999999999999999999999999999999998877777
Q ss_pred HHHH-------cCCCCceeecCChHHHHHcCCc
Q 027527 147 FSEQ-------TKFKGEVYADPNHSSYEALSFV 172 (222)
Q Consensus 147 f~~~-------~~~pfpil~Dpd~~lyk~lGl~ 172 (222)
|.+. .+++|++++|+++++++.||+.
T Consensus 80 ~~~~~~~~~~~~~~~f~~l~D~~~~~~~~~gv~ 112 (173)
T cd03015 80 WRNTPRKEGGLGKINFPLLADPKKKISRDYGVL 112 (173)
T ss_pred HHHhhhhhCCccCcceeEEECCchhHHHHhCCc
Confidence 8776 4689999999999999999986
No 19
>PRK13189 peroxiredoxin; Provisional
Probab=99.75 E-value=6.2e-18 Score=145.62 Aligned_cols=103 Identities=14% Similarity=0.092 Sum_probs=92.9
Q ss_pred ccccCcCCCcEEecCCCCeEeCCCccCCCeEEEEEEcCCCChhHHHHHHHHHHhHHHHHhCCCEEEEEcCCCHHHHHHHH
Q 027527 69 EDTKNLLDTVKVYDVNGNAIPISDLWKDRKAVVAFARHFGCVLCRKRADYLAAKKDVMDASGVALVLIGPGSVEQARTFS 148 (222)
Q Consensus 69 ~~~g~~apdf~L~D~~G~~v~Lsdl~~~~~vvVvF~R~~~Cp~C~~el~~L~~~~~~l~~~gv~lvaIs~~s~~~i~~f~ 148 (222)
..+|+.+|+|++.+.+|+ +.+++.++++++||+|||+.|||.|..|+.+|++++++|++.|++||+|+.|+....++|+
T Consensus 9 ~~vG~~aPdF~~~~~~g~-~~l~d~~~Gk~vvL~f~pa~fcpvC~tEl~~l~~~~~ef~~~~v~VigvS~D~~~~h~aw~ 87 (222)
T PRK13189 9 PLIGDKFPEFEVKTTHGP-IKLPDDYKGKWFVLFSHPADFTPVCTTEFVAFQKRYDEFRELNTELIGLSIDQVFSHIKWV 87 (222)
T ss_pred ccCCCcCCCcEeEcCCCC-EeeHHHhCCCeEEEEEeCCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEECCCHHHHHHHH
Confidence 468999999999999985 7888866777899999999999999999999999999999999999999999998777776
Q ss_pred HH------cCCCCceeecCChHHHHHcCCc
Q 027527 149 EQ------TKFKGEVYADPNHSSYEALSFV 172 (222)
Q Consensus 149 ~~------~~~pfpil~Dpd~~lyk~lGl~ 172 (222)
+. .+++||+++|+++++.++||+.
T Consensus 88 ~~~~~~~g~~i~fPllsD~~~~ia~~ygv~ 117 (222)
T PRK13189 88 EWIKEKLGVEIEFPIIADDRGEIAKKLGMI 117 (222)
T ss_pred HhHHHhcCcCcceeEEEcCccHHHHHhCCC
Confidence 54 3589999999999999999986
No 20
>PRK00522 tpx lipid hydroperoxide peroxidase; Provisional
Probab=99.74 E-value=1.3e-17 Score=137.30 Aligned_cols=102 Identities=9% Similarity=0.069 Sum_probs=89.4
Q ss_pred ccccCcCCCcEEecCCCCeEeCCCccCCCeEEEEEEcCCC-ChhHHHHHHHHHHhHHHHHhCCCEEEEEcCCCHHHHHHH
Q 027527 69 EDTKNLLDTVKVYDVNGNAIPISDLWKDRKAVVAFARHFG-CVLCRKRADYLAAKKDVMDASGVALVLIGPGSVEQARTF 147 (222)
Q Consensus 69 ~~~g~~apdf~L~D~~G~~v~Lsdl~~~~~vvVvF~R~~~-Cp~C~~el~~L~~~~~~l~~~gv~lvaIs~~s~~~i~~f 147 (222)
..+|+.+|+|++.|.+|+.++|+++ +++ .+|++||..| ||+|.+|++.|+++++++ .|++|++|+.|+++..++|
T Consensus 18 ~~~G~~~P~f~l~~~~g~~v~l~~~-~Gk-~vvl~f~~s~~cp~C~~e~~~l~~~~~~~--~~~~vv~vs~D~~~~~~~f 93 (167)
T PRK00522 18 PQVGDKAPDFTLVANDLSDVSLADF-AGK-RKVLNIFPSIDTGVCATSVRKFNQEAAEL--DNTVVLCISADLPFAQKRF 93 (167)
T ss_pred CCCCCCCCCeEEEcCCCcEEehHHh-CCC-EEEEEEEcCCCCCccHHHHHHHHHHHHHc--CCcEEEEEeCCCHHHHHHH
Confidence 4679999999999999999999997 455 4556666666 999999999999999998 3899999999999889999
Q ss_pred HHHcCCC-Cceeec-CChHHHHHcCCccc
Q 027527 148 SEQTKFK-GEVYAD-PNHSSYEALSFVSG 174 (222)
Q Consensus 148 ~~~~~~p-fpil~D-pd~~lyk~lGl~~~ 174 (222)
.++++++ +++++| +++.+.++||+...
T Consensus 94 ~~~~~~~~~~~lsD~~~~~~~~~~gv~~~ 122 (167)
T PRK00522 94 CGAEGLENVITLSDFRDHSFGKAYGVAIA 122 (167)
T ss_pred HHhCCCCCceEeecCCccHHHHHhCCeec
Confidence 9999998 799999 56799999998644
No 21
>cd03014 PRX_Atyp2cys Peroxiredoxin (PRX) family, Atypical 2-cys PRX subfamily; composed of PRXs containing peroxidatic and resolving cysteines, similar to the homodimeric thiol specific antioxidant (TSA) protein also known as TRX-dependent thiol peroxidase (Tpx). Tpx is a bacterial periplasmic peroxidase which differs from other PRXs in that it shows substrate specificity toward alkyl hydroperoxides over hydrogen peroxide. As with all other PRXs, the peroxidatic cysteine (N-terminal) of Tpx is oxidized into a sulfenic acid intermediate upon reaction with peroxides. Tpx is able to resolve this intermediate by forming an intramolecular disulfide bond with a conserved C-terminal cysteine (the resolving cysteine), which can then be reduced by thioredoxin. This differs from the typical 2-cys PRX which resolves the oxidized cysteine by forming an intermolecular disulfide bond with the resolving cysteine from the other subunit of the homodimer. Atypical 2-cys PRX homodimers have a loop-based
Probab=99.74 E-value=1.4e-17 Score=132.05 Aligned_cols=101 Identities=8% Similarity=0.132 Sum_probs=89.0
Q ss_pred cccCcCCCcEEecCCCCeEeCCCccCCCeEEEEEEcCCCChhHHHHHHHHHHhHHHHHhCCCEEEEEcCCCHHHHHHHHH
Q 027527 70 DTKNLLDTVKVYDVNGNAIPISDLWKDRKAVVAFARHFGCVLCRKRADYLAAKKDVMDASGVALVLIGPGSVEQARTFSE 149 (222)
Q Consensus 70 ~~g~~apdf~L~D~~G~~v~Lsdl~~~~~vvVvF~R~~~Cp~C~~el~~L~~~~~~l~~~gv~lvaIs~~s~~~i~~f~~ 149 (222)
++|+.+|+|++.|.+|+.++|+++ +++++||.|++..|||+|+++++.|+++++++ .|+.+|+|+.++.+..++|.+
T Consensus 1 ~~G~~aP~f~l~~~~g~~~~l~~~-~gk~vvl~f~~~~~c~~C~~e~~~l~~~~~~~--~~~~vi~Is~d~~~~~~~~~~ 77 (143)
T cd03014 1 KVGDKAPDFTLVTSDLSEVSLADF-AGKVKVISVFPSIDTPVCATQTKRFNKEAAKL--DNTVVLTISADLPFAQKRWCG 77 (143)
T ss_pred CCCCCCCCcEEECCCCcEEeHHHh-CCCeEEEEEEcCCCCCcCHHHHHHHHHHHHhc--CCCEEEEEECCCHHHHHHHHH
Confidence 368999999999999999999997 46666666665566899999999999999997 389999999999998999999
Q ss_pred HcCC-CCceeecCC-hHHHHHcCCcc
Q 027527 150 QTKF-KGEVYADPN-HSSYEALSFVS 173 (222)
Q Consensus 150 ~~~~-pfpil~Dpd-~~lyk~lGl~~ 173 (222)
+.+. +|++++|++ +++.++||+..
T Consensus 78 ~~~~~~~~~l~D~~~~~~~~~~gv~~ 103 (143)
T cd03014 78 AEGVDNVTTLSDFRDHSFGKAYGVLI 103 (143)
T ss_pred hcCCCCceEeecCcccHHHHHhCCee
Confidence 9997 699999997 99999999964
No 22
>PTZ00056 glutathione peroxidase; Provisional
Probab=99.73 E-value=1.5e-17 Score=141.02 Aligned_cols=90 Identities=19% Similarity=0.386 Sum_probs=82.2
Q ss_pred ccccCcCCCcEEecCCCCeEeCCCccCCCeEEEEEEcCCCChhHHHHHHHHHHhHHHHHhCCCEEEEEcC--------CC
Q 027527 69 EDTKNLLDTVKVYDVNGNAIPISDLWKDRKAVVAFARHFGCVLCRKRADYLAAKKDVMDASGVALVLIGP--------GS 140 (222)
Q Consensus 69 ~~~g~~apdf~L~D~~G~~v~Lsdl~~~~~vvVvF~R~~~Cp~C~~el~~L~~~~~~l~~~gv~lvaIs~--------~s 140 (222)
.+.+..+|+|++.|.+|+.++|+++ + +++||++||++|||+|++|++.|+++++++.+.|++||+|++ ++
T Consensus 13 ~~~~~~~pdf~l~d~~G~~vsL~~~-k-Gkvvlv~fwAswC~~C~~e~p~L~~l~~~~~~~g~~vvgv~~~~~~~~e~d~ 90 (199)
T PTZ00056 13 DELRKSIYDYTVKTLEGTTVPMSSL-K-NKVLMITNSASKCGLTKKHVDQMNRLHSVFNPLGLEILAFPTSQFLNQEFPN 90 (199)
T ss_pred hhcCCCCCceEEECCCCCEEeHHHh-C-CCEEEEEEECCCCCChHHHHHHHHHHHHHHhcCceEEEEecchhccCCCCCC
Confidence 3456789999999999999999997 3 468899999999999999999999999999999999999986 56
Q ss_pred HHHHHHHHHHcCCCCceeec
Q 027527 141 VEQARTFSEQTKFKGEVYAD 160 (222)
Q Consensus 141 ~~~i~~f~~~~~~pfpil~D 160 (222)
++.+++|+++++++||+++|
T Consensus 91 ~e~~~~f~~~~~~~fpvl~d 110 (199)
T PTZ00056 91 TKDIRKFNDKNKIKYNFFEP 110 (199)
T ss_pred HHHHHHHHHHcCCCceeeee
Confidence 78999999999999999986
No 23
>PRK10382 alkyl hydroperoxide reductase subunit C; Provisional
Probab=99.73 E-value=2.4e-17 Score=138.74 Aligned_cols=102 Identities=13% Similarity=0.103 Sum_probs=91.8
Q ss_pred cccCcCCCcEEec---CCCCeEeCCCccCCCeEEEEEEcCCCChhHHHHHHHHHHhHHHHHhCCCEEEEEcCCCHHHHHH
Q 027527 70 DTKNLLDTVKVYD---VNGNAIPISDLWKDRKAVVAFARHFGCVLCRKRADYLAAKKDVMDASGVALVLIGPGSVEQART 146 (222)
Q Consensus 70 ~~g~~apdf~L~D---~~G~~v~Lsdl~~~~~vvVvF~R~~~Cp~C~~el~~L~~~~~~l~~~gv~lvaIs~~s~~~i~~ 146 (222)
.+|+++|+|++.- -+.+.++|+++ .++++||.|+++.|||.|..|++.|++.+++|++.|++|++|+.|++...++
T Consensus 3 ~~~~~~p~f~~~~~~~g~~~~v~L~d~-~Gk~vvL~F~P~~~~p~C~~el~~l~~~~~~f~~~g~~vigIS~D~~~~~~a 81 (187)
T PRK10382 3 LINTKIKPFKNQAFKNGEFIEVTEKDT-EGRWSVFFFYPADFTFVCPTELGDVADHYEELQKLGVDVYSVSTDTHFTHKA 81 (187)
T ss_pred ccCCcCCCcEEEEEeCCcceEEEHHHh-CCCeEEEEEECCCCCCcCHHHHHHHHHHHHHHHhCCCEEEEEeCCCHHHHHH
Confidence 5799999998765 45567788896 4678889999999999999999999999999999999999999999999999
Q ss_pred HHHH----cCCCCceeecCChHHHHHcCCc
Q 027527 147 FSEQ----TKFKGEVYADPNHSSYEALSFV 172 (222)
Q Consensus 147 f~~~----~~~pfpil~Dpd~~lyk~lGl~ 172 (222)
|++. .+++||+++|+++.+.++||+.
T Consensus 82 ~~~~~~~~~~l~fpllsD~~~~ia~~ygv~ 111 (187)
T PRK10382 82 WHSSSETIAKIKYAMIGDPTGALTRNFDNM 111 (187)
T ss_pred HHHhhccccCCceeEEEcCchHHHHHcCCC
Confidence 9976 3789999999999999999984
No 24
>cd02969 PRX_like1 Peroxiredoxin (PRX)-like 1 family; hypothetical proteins that show sequence similarity to PRXs. Members of this group contain a conserved cysteine that aligns to the first cysteine in the CXXC motif of TRX. This does not correspond to the peroxidatic cysteine found in PRXs, which aligns to the second cysteine in the CXXC motif of TRX. In addition, these proteins do not contain the other two conserved residues of the catalytic triad of PRX. PRXs confer a protective antioxidant role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either thioredoxin, glutathione, trypanothione and AhpF.
Probab=99.72 E-value=4.7e-17 Score=133.34 Aligned_cols=107 Identities=19% Similarity=0.184 Sum_probs=96.2
Q ss_pred cCcCCCcEEecCCCCeEeCCCccCCCeEEEEEEcCCCChhHHHHHHHHHHhHHHHHhCCCEEEEEcCC--------CHHH
Q 027527 72 KNLLDTVKVYDVNGNAIPISDLWKDRKAVVAFARHFGCVLCRKRADYLAAKKDVMDASGVALVLIGPG--------SVEQ 143 (222)
Q Consensus 72 g~~apdf~L~D~~G~~v~Lsdl~~~~~vvVvF~R~~~Cp~C~~el~~L~~~~~~l~~~gv~lvaIs~~--------s~~~ 143 (222)
|+++|+|++.|.+|+.++|+++. +++++|++||.+|||.|.++++.|+++++++++.++++|+|+.+ +++.
T Consensus 1 g~~~p~f~l~~~~g~~v~l~~~~-~~k~~ll~f~~t~Cp~c~~~~~~l~~l~~~~~~~~v~~v~is~d~~~~~~~d~~~~ 79 (171)
T cd02969 1 GSPAPDFSLPDTDGKTYSLADFA-DGKALVVMFICNHCPYVKAIEDRLNRLAKEYGAKGVAVVAINSNDIEAYPEDSPEN 79 (171)
T ss_pred CCcCCCccccCCCCCEEeHHHHh-CCCEEEEEEECCCCccHHHHHHHHHHHHHHHhhCCeEEEEEecCccccccccCHHH
Confidence 57899999999999999999964 44578888889999999999999999999999999999999986 4689
Q ss_pred HHHHHHHcCCCCceeecCChHHHHHcCCccccceee
Q 027527 144 ARTFSEQTKFKGEVYADPNHSSYEALSFVSGVLVTF 179 (222)
Q Consensus 144 i~~f~~~~~~pfpil~Dpd~~lyk~lGl~~~~~~~~ 179 (222)
+++|.++++++|+++.|+++.+.+.||+...+...+
T Consensus 80 ~~~~~~~~~~~~~~l~D~~~~~~~~~~v~~~P~~~l 115 (171)
T cd02969 80 MKAKAKEHGYPFPYLLDETQEVAKAYGAACTPDFFL 115 (171)
T ss_pred HHHHHHHCCCCceEEECCchHHHHHcCCCcCCcEEE
Confidence 999999999999999999999999999977665444
No 25
>KOG0855 consensus Alkyl hydroperoxide reductase, thiol specific antioxidant and related enzymes [Posttranslational modification, protein turnover, chaperones]
Probab=99.71 E-value=2.1e-17 Score=135.89 Aligned_cols=113 Identities=12% Similarity=0.224 Sum_probs=106.8
Q ss_pred CCccccCcCCCcEEecCCCCeEeCCCccCCCeEEEEEEcCCCChhHHHHHHHHHHhHHHHHhCCCEEEEEcCCCHHHHHH
Q 027527 67 VSEDTKNLLDTVKVYDVNGNAIPISDLWKDRKAVVAFARHFGCVLCRKRADYLAAKKDVMDASGVALVLIGPGSVEQART 146 (222)
Q Consensus 67 ~~~~~g~~apdf~L~D~~G~~v~Lsdl~~~~~vvVvF~R~~~Cp~C~~el~~L~~~~~~l~~~gv~lvaIs~~s~~~i~~ 146 (222)
-..++|+.+|||+|+|.||+.|+|.++-+.+++|++|+++.-.|.|.+++..+++.|++|++.|.+|++++.|+....++
T Consensus 61 ~~v~~Gd~iPD~tL~dedg~sisLkkit~nk~vV~f~YP~asTPGCTkQaCgFRDnY~k~kka~aeV~GlS~D~s~sqKa 140 (211)
T KOG0855|consen 61 LKVNKGDAIPDFTLKDEDGKSISLKKITGNKPVVLFFYPAASTPGCTKQACGFRDNYEKFKKAGAEVIGLSGDDSASQKA 140 (211)
T ss_pred eeeecCCcCCCcccccCCCCeeeeeeecCCCcEEEEEeccCCCCCcccccccccccHHHHhhcCceEEeeccCchHHHHH
Confidence 36899999999999999999999999987788999999999999999999999999999999999999999999999999
Q ss_pred HHHHcCCCCceeecCChHHHHHcCCccccceee
Q 027527 147 FSEQTKFKGEVYADPNHSSYEALSFVSGVLVTF 179 (222)
Q Consensus 147 f~~~~~~pfpil~Dpd~~lyk~lGl~~~~~~~~ 179 (222)
|..+.++||.+++||.+++.+.||....+...+
T Consensus 141 F~sKqnlPYhLLSDpk~e~ik~lGa~k~p~gg~ 173 (211)
T KOG0855|consen 141 FASKQNLPYHLLSDPKNEVIKDLGAPKDPFGGL 173 (211)
T ss_pred hhhhccCCeeeecCcchhHHHHhCCCCCCCCCc
Confidence 999999999999999999999999998765543
No 26
>cd00340 GSH_Peroxidase Glutathione (GSH) peroxidase family; tetrameric selenoenzymes that catalyze the reduction of a variety of hydroperoxides including lipid peroxidases, using GSH as a specific electron donor substrate. GSH peroxidase contains one selenocysteine residue per subunit, which is involved in catalysis. Different isoenzymes are known in mammals,which are involved in protection against reactive oxygen species, redox regulation of many metabolic processes, peroxinitrite scavenging, and modulation of inflammatory processes.
Probab=99.71 E-value=2.2e-17 Score=133.26 Aligned_cols=84 Identities=18% Similarity=0.230 Sum_probs=76.3
Q ss_pred CCCcEEecCCCCeEeCCCccCCCeEEEEEEcCCCChhHHHHHHHHHHhHHHHHhCCCEEEEEcC--------CCHHHHHH
Q 027527 75 LDTVKVYDVNGNAIPISDLWKDRKAVVAFARHFGCVLCRKRADYLAAKKDVMDASGVALVLIGP--------GSVEQART 146 (222)
Q Consensus 75 apdf~L~D~~G~~v~Lsdl~~~~~vvVvF~R~~~Cp~C~~el~~L~~~~~~l~~~gv~lvaIs~--------~s~~~i~~ 146 (222)
+|+|++.|.+|+.++|+++. +++||++||++||| |+++++.|+++++++++.|+.+|+|+. ++.+.+++
T Consensus 2 ~~~f~l~d~~G~~v~l~~~~--Gk~vvl~fwatwC~-C~~e~p~l~~l~~~~~~~~~~vv~v~~~~~~~~~~~~~~~~~~ 78 (152)
T cd00340 2 IYDFSVKDIDGEPVSLSKYK--GKVLLIVNVASKCG-FTPQYEGLEALYEKYKDRGLVVLGFPCNQFGGQEPGSNEEIKE 78 (152)
T ss_pred cceeEEECCCCCEEeHHHhC--CCEEEEEEEcCCCC-chHHHHHHHHHHHHhcCCCEEEEEeccCccccCCCCCHHHHHH
Confidence 78999999999999999973 46788899999999 999999999999999999999999986 44688999
Q ss_pred HHHH-cCCCCceeecC
Q 027527 147 FSEQ-TKFKGEVYADP 161 (222)
Q Consensus 147 f~~~-~~~pfpil~Dp 161 (222)
|+++ ++++||++.|.
T Consensus 79 f~~~~~~~~fp~~~d~ 94 (152)
T cd00340 79 FCETNYGVTFPMFAKI 94 (152)
T ss_pred HHHHhcCCCceeeeeE
Confidence 9987 89999999874
No 27
>PRK15000 peroxidase; Provisional
Probab=99.71 E-value=6.6e-17 Score=137.17 Aligned_cols=103 Identities=13% Similarity=0.058 Sum_probs=87.7
Q ss_pred cccCcCCCcEEecCC--CCe---EeCCCccCCCeEEEEEEcCCCChhHHHHHHHHHHhHHHHHhCCCEEEEEcCCCHHHH
Q 027527 70 DTKNLLDTVKVYDVN--GNA---IPISDLWKDRKAVVAFARHFGCVLCRKRADYLAAKKDVMDASGVALVLIGPGSVEQA 144 (222)
Q Consensus 70 ~~g~~apdf~L~D~~--G~~---v~Lsdl~~~~~vvVvF~R~~~Cp~C~~el~~L~~~~~~l~~~gv~lvaIs~~s~~~i 144 (222)
.+|+++|+|++.+.. |+. ++|+++.+++++||.|++..|||.|..|+++|++++++|+++|++|++|+.|+.+..
T Consensus 3 ~vg~~aPdF~~~~~~~~g~~~~~~~l~~~~~gk~vvL~F~p~~~t~vC~~El~~l~~~~~~f~~~g~~vigvS~D~~~~~ 82 (200)
T PRK15000 3 LVTRQAPDFTAAAVLGSGEIVDKFNFKQHTNGKTTVLFFWPMDFTFVCPSELIAFDKRYEEFQKRGVEVVGVSFDSEFVH 82 (200)
T ss_pred cCCCcCCCCEeecccCCCceeeeeeHHHHhCCCEEEEEEECCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEECCCHHHH
Confidence 479999999999864 453 456665567788888888899999999999999999999999999999999998776
Q ss_pred HHHHHH----cC---CCCceeecCChHHHHHcCCc
Q 027527 145 RTFSEQ----TK---FKGEVYADPNHSSYEALSFV 172 (222)
Q Consensus 145 ~~f~~~----~~---~pfpil~Dpd~~lyk~lGl~ 172 (222)
++|.+. .+ ++||+++|+++++.+.||+.
T Consensus 83 ~~w~~~~~~~~g~~~i~fpllsD~~~~ia~~ygv~ 117 (200)
T PRK15000 83 NAWRNTPVDKGGIGPVKYAMVADVKREIQKAYGIE 117 (200)
T ss_pred HHHHhhHHHhCCccccCceEEECCCcHHHHHcCCc
Confidence 666543 44 68999999999999999986
No 28
>PTZ00256 glutathione peroxidase; Provisional
Probab=99.70 E-value=7.1e-17 Score=134.65 Aligned_cols=90 Identities=11% Similarity=0.235 Sum_probs=78.7
Q ss_pred cccCcCCCcEEecCCCCeEeCCCccCCCeEEEEEEcCCCChhHHHHHHHHHHhHHHHHhCCCEEEEEcCC--------CH
Q 027527 70 DTKNLLDTVKVYDVNGNAIPISDLWKDRKAVVAFARHFGCVLCRKRADYLAAKKDVMDASGVALVLIGPG--------SV 141 (222)
Q Consensus 70 ~~g~~apdf~L~D~~G~~v~Lsdl~~~~~vvVvF~R~~~Cp~C~~el~~L~~~~~~l~~~gv~lvaIs~~--------s~ 141 (222)
..++.+|+|++.|.+|+.++|+++ +++++||+++|++|||+|++|++.|+++++++++.|+.||+|+++ +.
T Consensus 15 ~~~~~~p~f~l~d~~G~~vsLs~~-~Gk~vvlv~n~atwCp~C~~e~p~l~~l~~~~~~~gv~vv~vs~~~~~~~~~~~~ 93 (183)
T PTZ00256 15 PPTKSFFEFEAIDIDGQLVQLSKF-KGKKAIIVVNVACKCGLTSDHYTQLVELYKQYKSQGLEILAFPCNQFMEQEPWDE 93 (183)
T ss_pred CCCCcccceEeEcCCCCEEeHHHh-CCCcEEEEEEECCCCCchHHHHHHHHHHHHHHhhCCcEEEEEecccccccCCCCH
Confidence 345779999999999999999997 466677777799999999999999999999999999999999863 45
Q ss_pred HHHHHHHH-HcCCCCceeec
Q 027527 142 EQARTFSE-QTKFKGEVYAD 160 (222)
Q Consensus 142 ~~i~~f~~-~~~~pfpil~D 160 (222)
+.+++|.+ +++++||++.|
T Consensus 94 ~~~~~f~~~~~~~~fpv~~d 113 (183)
T PTZ00256 94 PEIKEYVQKKFNVDFPLFQK 113 (183)
T ss_pred HHHHHHHHHhcCCCCCCceE
Confidence 78888975 78999999965
No 29
>PRK03147 thiol-disulfide oxidoreductase; Provisional
Probab=99.70 E-value=2e-16 Score=128.62 Aligned_cols=112 Identities=16% Similarity=0.177 Sum_probs=99.1
Q ss_pred CCCccccCcCCCcEEecCCCCeEeCCCccCCCeEEEEEEcCCCChhHHHHHHHHHHhHHHHHhCCCEEEEEcCCCH-HHH
Q 027527 66 SVSEDTKNLLDTVKVYDVNGNAIPISDLWKDRKAVVAFARHFGCVLCRKRADYLAAKKDVMDASGVALVLIGPGSV-EQA 144 (222)
Q Consensus 66 ~~~~~~g~~apdf~L~D~~G~~v~Lsdl~~~~~vvVvF~R~~~Cp~C~~el~~L~~~~~~l~~~gv~lvaIs~~s~-~~i 144 (222)
.....+|+.+|+|++.|.+|+.++++++ ++ +.++++|++.||+.|+.+.+.|+++.+++.+.++++++|+.++. +.+
T Consensus 32 ~~~~~~g~~~p~~~~~~~~g~~~~l~~~-~~-k~~~l~f~a~~C~~C~~~~~~l~~~~~~~~~~~~~vi~i~~d~~~~~~ 109 (173)
T PRK03147 32 KEKVQVGKEAPNFVLTDLEGKKIELKDL-KG-KGVFLNFWGTWCKPCEKEMPYMNELYPKYKEKGVEIIAVNVDETELAV 109 (173)
T ss_pred ccccCCCCCCCCcEeecCCCCEEeHHHc-CC-CEEEEEEECCcCHHHHHHHHHHHHHHHHhhcCCeEEEEEEcCCCHHHH
Confidence 4457889999999999999999999996 44 45666777999999999999999999999999999999999755 788
Q ss_pred HHHHHHcCCCCceeecCChHHHHHcCCccccceee
Q 027527 145 RTFSEQTKFKGEVYADPNHSSYEALSFVSGVLVTF 179 (222)
Q Consensus 145 ~~f~~~~~~pfpil~Dpd~~lyk~lGl~~~~~~~~ 179 (222)
++|.++.+++|+++.|++..+.+.||+...+...+
T Consensus 110 ~~~~~~~~~~~~~~~d~~~~~~~~~~v~~~P~~~l 144 (173)
T PRK03147 110 KNFVNRYGLTFPVAIDKGRQVIDAYGVGPLPTTFL 144 (173)
T ss_pred HHHHHHhCCCceEEECCcchHHHHcCCCCcCeEEE
Confidence 99999999999999999999999999987765444
No 30
>TIGR02661 MauD methylamine dehydrogenase accessory protein MauD. This protein, MauD, appears critical to proper formation of the small subunit of methylamine dehydrogenase, which has both an unusual tryptophan tryptophylquinone cofactor and multiple disulfide bonds. MauD shares sequence similarity, including a CPxC motif, with a number of thiol:disulfide interchange proteins. In MauD mutants, the small subunit apparently does not form properly and is rapidly degraded.
Probab=99.69 E-value=3.4e-16 Score=131.26 Aligned_cols=109 Identities=15% Similarity=0.205 Sum_probs=90.8
Q ss_pred CCccccCcCCCcEEecCCCCeEeCCCccCCCeEEEEEEcCCCChhHHHHHHHHHHhHHHHHhCCCEEEEEcCCCHHHHHH
Q 027527 67 VSEDTKNLLDTVKVYDVNGNAIPISDLWKDRKAVVAFARHFGCVLCRKRADYLAAKKDVMDASGVALVLIGPGSVEQART 146 (222)
Q Consensus 67 ~~~~~g~~apdf~L~D~~G~~v~Lsdl~~~~~vvVvF~R~~~Cp~C~~el~~L~~~~~~l~~~gv~lvaIs~~s~~~i~~ 146 (222)
...++|+.+|+|+++|.+|+.+++++.-..++.+|++||++|||+|+++++.+++++++ .|+++++|+.+++++.++
T Consensus 44 ~~~~vG~~aP~f~l~d~~G~~v~l~~~~~~gk~vvl~F~atwCp~C~~~lp~l~~~~~~---~~~~vv~Is~~~~~~~~~ 120 (189)
T TIGR02661 44 HGPDVGDAAPIFNLPDFDGEPVRIGGSIAPGRPTLLMFTAPSCPVCDKLFPIIKSIARA---EETDVVMISDGTPAEHRR 120 (189)
T ss_pred cCCCCCCcCCCcEecCCCCCEEeccchhcCCCEEEEEEECCCChhHHHHHHHHHHHHHh---cCCcEEEEeCCCHHHHHH
Confidence 34689999999999999999999974311345677777999999999999999997753 478999999999999999
Q ss_pred HHHHcCCCCceeecCChHHHHHcCCccccceee
Q 027527 147 FSEQTKFKGEVYADPNHSSYEALSFVSGVLVTF 179 (222)
Q Consensus 147 f~~~~~~pfpil~Dpd~~lyk~lGl~~~~~~~~ 179 (222)
|+++++++|+.|. .+.++.+.||+...+...+
T Consensus 121 ~~~~~~~~~~~~~-~~~~i~~~y~v~~~P~~~l 152 (189)
T TIGR02661 121 FLKDHELGGERYV-VSAEIGMAFQVGKIPYGVL 152 (189)
T ss_pred HHHhcCCCcceee-chhHHHHhccCCccceEEE
Confidence 9999999998765 6788999999976665444
No 31
>PLN02412 probable glutathione peroxidase
Probab=99.67 E-value=1.8e-16 Score=130.50 Aligned_cols=87 Identities=16% Similarity=0.228 Sum_probs=76.4
Q ss_pred cCcCCCcEEecCCCCeEeCCCccCCCeEEEEEEcCCCChhHHHHHHHHHHhHHHHHhCCCEEEEEcC--------CCHHH
Q 027527 72 KNLLDTVKVYDVNGNAIPISDLWKDRKAVVAFARHFGCVLCRKRADYLAAKKDVMDASGVALVLIGP--------GSVEQ 143 (222)
Q Consensus 72 g~~apdf~L~D~~G~~v~Lsdl~~~~~vvVvF~R~~~Cp~C~~el~~L~~~~~~l~~~gv~lvaIs~--------~s~~~ 143 (222)
.+.+|+|++.|.+|+.++|+++ + ++++|++||++|||+|++|++.|+++++++++.|+.|++|+. ++.++
T Consensus 6 ~~~~pdf~l~d~~G~~v~l~~~-~-gk~vlv~f~a~~C~~c~~e~~~l~~l~~~~~~~g~~vvgv~~~~~~~~~~~~~~~ 83 (167)
T PLN02412 6 PKSIYDFTVKDIGGNDVSLNQY-K-GKVLLIVNVASKCGLTDSNYKELNVLYEKYKEQGFEILAFPCNQFLGQEPGSNEE 83 (167)
T ss_pred CCCCCceEEECCCCCEEeHHHh-C-CCEEEEEEeCCCCCChHHHHHHHHHHHHHHhhCCcEEEEecccccccCCCCCHHH
Confidence 4779999999999999999997 3 467888889999999999999999999999999999999986 35556
Q ss_pred HHH-HHHHcCCCCceeec
Q 027527 144 ART-FSEQTKFKGEVYAD 160 (222)
Q Consensus 144 i~~-f~~~~~~pfpil~D 160 (222)
+.+ |+++++++||++.|
T Consensus 84 ~~~~~~~~~~~~fpvl~~ 101 (167)
T PLN02412 84 IQQTVCTRFKAEFPIFDK 101 (167)
T ss_pred HHHHHHHccCCCCceEeE
Confidence 655 56999999999873
No 32
>PLN02399 phospholipid hydroperoxide glutathione peroxidase
Probab=99.67 E-value=5.1e-16 Score=135.11 Aligned_cols=90 Identities=17% Similarity=0.272 Sum_probs=81.1
Q ss_pred ccccCcCCCcEEecCCCCeEeCCCccCCCeEEEEEEcCCCChhHHHHHHHHHHhHHHHHhCCCEEEEEcC--------CC
Q 027527 69 EDTKNLLDTVKVYDVNGNAIPISDLWKDRKAVVAFARHFGCVLCRKRADYLAAKKDVMDASGVALVLIGP--------GS 140 (222)
Q Consensus 69 ~~~g~~apdf~L~D~~G~~v~Lsdl~~~~~vvVvF~R~~~Cp~C~~el~~L~~~~~~l~~~gv~lvaIs~--------~s 140 (222)
..+++.+|+|++.|.+|+.++|+++ + +++||++||++|||+|+.|++.|+++++++++.|++||+|.+ ++
T Consensus 73 ~~~g~~aPdF~l~d~~G~~vsLsd~-k-GK~vvl~FwAswCp~c~~e~p~L~~L~~~~~~~Gv~VIgV~~d~~~~~e~~s 150 (236)
T PLN02399 73 AATEKSVHDFTVKDIDGKDVALSKF-K-GKVLLIVNVASKCGLTSSNYSELSHLYEKYKTQGFEILAFPCNQFGGQEPGS 150 (236)
T ss_pred hhcCCCCCceEEECCCCCEEeHHHh-C-CCeEEEEEEcCCCcchHHHHHHHHHHHHHHhcCCcEEEEEecccccccCCCC
Confidence 3588999999999999999999997 3 468888999999999999999999999999999999999996 46
Q ss_pred HHHHHHHH-HHcCCCCceeec
Q 027527 141 VEQARTFS-EQTKFKGEVYAD 160 (222)
Q Consensus 141 ~~~i~~f~-~~~~~pfpil~D 160 (222)
.+++++|+ ++++++||++.|
T Consensus 151 ~~ei~~f~~~~~g~~fPvl~~ 171 (236)
T PLN02399 151 NPEIKQFACTRFKAEFPIFDK 171 (236)
T ss_pred HHHHHHHHHHhcCCCCccccc
Confidence 67899997 688999999864
No 33
>cd03012 TlpA_like_DipZ_like TlpA-like family, DipZ-like subfamily; composed uncharacterized proteins containing a TlpA-like TRX domain. Some members show domain architectures similar to that of E. coli DipZ protein (also known as DsbD). The only eukaryotic members of the TlpA family belong to this subfamily. TlpA is a disulfide reductase known to have a crucial role in the biogenesis of cytochrome aa3.
Probab=99.67 E-value=2.3e-16 Score=123.21 Aligned_cols=93 Identities=12% Similarity=0.208 Sum_probs=82.2
Q ss_pred CCeEeCCCccCCCeEEEEEEcCCCChhHHHHHHHHHHhHHHHHhCCCEEEEEcC------CCHHHHHHHHHHcCCCCcee
Q 027527 85 GNAIPISDLWKDRKAVVAFARHFGCVLCRKRADYLAAKKDVMDASGVALVLIGP------GSVEQARTFSEQTKFKGEVY 158 (222)
Q Consensus 85 G~~v~Lsdl~~~~~vvVvF~R~~~Cp~C~~el~~L~~~~~~l~~~gv~lvaIs~------~s~~~i~~f~~~~~~pfpil 158 (222)
|++++|+++ ++ +++|++||++|||+|+++++.|+++++++.+.|+.+++|+. ++++.+++|+++++++||++
T Consensus 13 ~~~v~l~~~-~g-k~vvl~F~a~~C~~C~~~~p~l~~l~~~~~~~~~~vi~i~~~~~~~~~~~~~~~~~~~~~~~~~p~~ 90 (126)
T cd03012 13 DKPLSLAQL-RG-KVVLLDFWTYCCINCLHTLPYLTDLEQKYKDDGLVVIGVHSPEFAFERDLANVKSAVLRYGITYPVA 90 (126)
T ss_pred CCccCHHHh-CC-CEEEEEEECCCCccHHHHHHHHHHHHHHcCcCCeEEEEeccCccccccCHHHHHHHHHHcCCCCCEE
Confidence 578999997 44 56777888999999999999999999999999999999976 46789999999999999999
Q ss_pred ecCChHHHHHcCCccccceee
Q 027527 159 ADPNHSSYEALSFVSGVLVTF 179 (222)
Q Consensus 159 ~Dpd~~lyk~lGl~~~~~~~~ 179 (222)
.|++..+++.||+...+...+
T Consensus 91 ~D~~~~~~~~~~v~~~P~~~v 111 (126)
T cd03012 91 NDNDYATWRAYGNQYWPALYL 111 (126)
T ss_pred ECCchHHHHHhCCCcCCeEEE
Confidence 999999999999976665444
No 34
>PTZ00253 tryparedoxin peroxidase; Provisional
Probab=99.67 E-value=3.6e-16 Score=131.99 Aligned_cols=105 Identities=10% Similarity=0.028 Sum_probs=90.3
Q ss_pred CCccccCcCCCcEEec----CCCCeEeCCCccCCCeEEEEEEcCCCChhHHHHHHHHHHhHHHHHhCCCEEEEEcCCCHH
Q 027527 67 VSEDTKNLLDTVKVYD----VNGNAIPISDLWKDRKAVVAFARHFGCVLCRKRADYLAAKKDVMDASGVALVLIGPGSVE 142 (222)
Q Consensus 67 ~~~~~g~~apdf~L~D----~~G~~v~Lsdl~~~~~vvVvF~R~~~Cp~C~~el~~L~~~~~~l~~~gv~lvaIs~~s~~ 142 (222)
....+|+++|||++.+ .+|+.++|+++ ++++++|+|++..||+.|..++.+|++++++|++.|++||+|+.++.+
T Consensus 4 ~~~~~G~~aPdF~~~~~~~~~~~~~v~l~d~-~Gk~~lL~F~p~~~~~~C~~e~~~l~~~~~~f~~~g~~vv~IS~d~~~ 82 (199)
T PTZ00253 4 GDAKINHPAPSFEEVALMPNGSFKKISLSSY-KGKWVVLFFYPLDFTFVCPTEIIQFSDSVKRFNELNCEVLACSMDSEY 82 (199)
T ss_pred cccccCCcCCCCEeeccccCCCCcEEeHHHH-CCCEEEEEEEcCCCCCcCHHHHHHHHHHHHHHHHcCCEEEEEeCCCHH
Confidence 3457899999999654 57789999996 567888888889999999999999999999999999999999999987
Q ss_pred HHHHHHHH-------cCCCCceeecCChHHHHHcCCc
Q 027527 143 QARTFSEQ-------TKFKGEVYADPNHSSYEALSFV 172 (222)
Q Consensus 143 ~i~~f~~~-------~~~pfpil~Dpd~~lyk~lGl~ 172 (222)
...+|... .+++||+++|+++++.+.||+.
T Consensus 83 ~~~~~~~~~~~~~~~~~~~fpll~D~~~~ia~~ygv~ 119 (199)
T PTZ00253 83 AHLQWTLQERKKGGLGTMAIPMLADKTKSIARSYGVL 119 (199)
T ss_pred HHHHHHhChHhhCCccccccceEECcHhHHHHHcCCc
Confidence 66665431 1489999999999999999985
No 35
>PRK15412 thiol:disulfide interchange protein DsbE; Provisional
Probab=99.65 E-value=8.4e-16 Score=128.28 Aligned_cols=107 Identities=15% Similarity=0.100 Sum_probs=89.1
Q ss_pred CccccCcCCCcEEecCC--CCeEeCCCccCCCeEEEEEEcCCCChhHHHHHHHHHHhHHHHHhCCCEEEEEcCC-CHHHH
Q 027527 68 SEDTKNLLDTVKVYDVN--GNAIPISDLWKDRKAVVAFARHFGCVLCRKRADYLAAKKDVMDASGVALVLIGPG-SVEQA 144 (222)
Q Consensus 68 ~~~~g~~apdf~L~D~~--G~~v~Lsdl~~~~~vvVvF~R~~~Cp~C~~el~~L~~~~~~l~~~gv~lvaIs~~-s~~~i 144 (222)
...+|+.+|+|++.|.+ |+.+.+.++.+ ++++|++||++|||+|+++++.|.++. +.|+++++|+.+ +.+.+
T Consensus 38 ~~~~g~~~p~f~l~~~~g~g~~~~~~~~~~-gk~vvv~FwatwC~~C~~e~p~l~~l~----~~~~~vi~v~~~~~~~~~ 112 (185)
T PRK15412 38 SALIGKPVPKFRLESLENPGQFYQADVLTQ-GKPVLLNVWATWCPTCRAEHQYLNQLS----AQGIRVVGMNYKDDRQKA 112 (185)
T ss_pred hhhcCCCCCCcCCccCCCCCccccHHHhcC-CCEEEEEEECCCCHHHHHHHHHHHHHH----HcCCEEEEEECCCCHHHH
Confidence 45679999999999988 47777766544 456888889999999999999997764 458999999964 56789
Q ss_pred HHHHHHcCCCCc-eeecCChHHHHHcCCccccceee
Q 027527 145 RTFSEQTKFKGE-VYADPNHSSYEALSFVSGVLVTF 179 (222)
Q Consensus 145 ~~f~~~~~~pfp-il~Dpd~~lyk~lGl~~~~~~~~ 179 (222)
++|.++++++|+ ++.|++..+.+.||+...+...+
T Consensus 113 ~~~~~~~~~~~~~~~~D~~~~~~~~~gv~~~P~t~v 148 (185)
T PRK15412 113 ISWLKELGNPYALSLFDGDGMLGLDLGVYGAPETFL 148 (185)
T ss_pred HHHHHHcCCCCceEEEcCCccHHHhcCCCcCCeEEE
Confidence 999999999998 58899999999999987775444
No 36
>TIGR02540 gpx7 putative glutathione peroxidase Gpx7. This model represents one of several families of known and probable glutathione peroxidases. This family is restricted to animals and designated GPX7.
Probab=99.65 E-value=3.5e-16 Score=126.25 Aligned_cols=84 Identities=11% Similarity=0.190 Sum_probs=75.8
Q ss_pred CCCcEEecCCCCeEeCCCccCCCeEEEEEEcCCCChhHHHHHHHHHHhHHHHHhCCCEEEEEcC--------CCHHHHHH
Q 027527 75 LDTVKVYDVNGNAIPISDLWKDRKAVVAFARHFGCVLCRKRADYLAAKKDVMDASGVALVLIGP--------GSVEQART 146 (222)
Q Consensus 75 apdf~L~D~~G~~v~Lsdl~~~~~vvVvF~R~~~Cp~C~~el~~L~~~~~~l~~~gv~lvaIs~--------~s~~~i~~ 146 (222)
+-+|++.|.+|+.++|+++ ++ +++|++||++|||+|.++++.|+++++++.+.|+.+++|.+ ++.+.+++
T Consensus 2 ~~~f~l~~~~G~~~~l~~~-~G-k~vvv~~~as~C~~c~~~~~~l~~l~~~~~~~~~~v~~i~~~~~~~~~~d~~~~~~~ 79 (153)
T TIGR02540 2 FYSFEVKDARGRTVSLEKY-RG-KVSLVVNVASECGFTDQNYRALQELHRELGPSHFNVLAFPCNQFGESEPDSSKEIES 79 (153)
T ss_pred cccceeECCCCCEecHHHh-CC-CEEEEEEeCCCCCchhhhHHHHHHHHHHHhhCCeEEEEEeccccccCCCCCHHHHHH
Confidence 4579999999999999997 34 55778899999999999999999999999999999999985 67789999
Q ss_pred HHHH-cCCCCceeec
Q 027527 147 FSEQ-TKFKGEVYAD 160 (222)
Q Consensus 147 f~~~-~~~pfpil~D 160 (222)
|+++ ++++||++.|
T Consensus 80 f~~~~~~~~fp~~~d 94 (153)
T TIGR02540 80 FARRNYGVTFPMFSK 94 (153)
T ss_pred HHHHhcCCCCCccce
Confidence 9986 8999999987
No 37
>cd02968 SCO SCO (an acronym for Synthesis of Cytochrome c Oxidase) family; composed of proteins similar to Sco1, a membrane-anchored protein possessing a soluble domain with a TRX fold. Members of this family are required for the proper assembly of cytochrome c oxidase (COX). They contain a metal binding motif, typically CXXXC, which is located in a flexible loop. COX, the terminal enzyme in the respiratory chain, is imbedded in the inner mitochondrial membrane of all eukaryotes and in the plasma membrane of some prokaryotes. It is composed of two subunits, COX I and COX II. It has been proposed that Sco1 specifically delivers copper to the CuA site, a dinuclear copper center, of the COX II subunit. Mutations in human Sco1 and Sco2 cause fatal infantile hepatoencephalomyopathy and cardioencephalomyopathy, respectively. Both disorders are associated with severe COX deficiency in affected tissues. More recently, it has been argued that the redox sensitivity of the copper binding properti
Probab=99.64 E-value=7.5e-16 Score=121.29 Aligned_cols=99 Identities=19% Similarity=0.235 Sum_probs=87.5
Q ss_pred cCCCcEEecCCCCeEeCCCccCCCeEEEEEEcCCCChh-HHHHHHHHHHhHHHHHhCC---CEEEEEcCC----CHHHHH
Q 027527 74 LLDTVKVYDVNGNAIPISDLWKDRKAVVAFARHFGCVL-CRKRADYLAAKKDVMDASG---VALVLIGPG----SVEQAR 145 (222)
Q Consensus 74 ~apdf~L~D~~G~~v~Lsdl~~~~~vvVvF~R~~~Cp~-C~~el~~L~~~~~~l~~~g---v~lvaIs~~----s~~~i~ 145 (222)
.+|+|++.|.+|+.++++++ ++ +.+|++|++.||+. |+++++.|+++++++.+.| +++++|+.+ +++.++
T Consensus 1 ~~p~f~l~~~~g~~~~l~~~-~g-k~~vl~f~~~~C~~~C~~~l~~l~~~~~~~~~~~~~~v~~v~vs~d~~~d~~~~~~ 78 (142)
T cd02968 1 IGPDFTLTDQDGRPVTLSDL-KG-KPVLVYFGYTHCPDVCPTTLANLAQALKQLGADGGDDVQVVFISVDPERDTPEVLK 78 (142)
T ss_pred CCCceEEEcCCCCEEchHHh-CC-CEEEEEEEcCCCcccCHHHHHHHHHHHHHhhHhhcCceEEEEEEECCCCCCHHHHH
Confidence 47999999999999999997 44 56778889999997 9999999999999998875 999999974 468899
Q ss_pred HHHHHcCCCCceeecCC---hHHHHHcCCccc
Q 027527 146 TFSEQTKFKGEVYADPN---HSSYEALSFVSG 174 (222)
Q Consensus 146 ~f~~~~~~pfpil~Dpd---~~lyk~lGl~~~ 174 (222)
+|.++++.+|+++.|++ ..+.+.||+...
T Consensus 79 ~~~~~~~~~~~~l~~~~~~~~~~~~~~g~~~~ 110 (142)
T cd02968 79 AYAKAFGPGWIGLTGTPEEIEALAKAFGVYYE 110 (142)
T ss_pred HHHHHhCCCcEEEECCHHHHHHHHHHhcEEEE
Confidence 99999999999999986 789999998654
No 38
>TIGR00385 dsbE periplasmic protein thiol:disulfide oxidoreductases, DsbE subfamily. Involved in the biogenesis of c-type cytochromes as well as in disulfide bond formation in some periplasmic proteins.
Probab=99.63 E-value=2e-15 Score=124.53 Aligned_cols=110 Identities=15% Similarity=0.104 Sum_probs=88.1
Q ss_pred CCCCccccCcCCCcEEecCCCCeEeC--CCccCCCeEEEEEEcCCCChhHHHHHHHHHHhHHHHHhCCCEEEEEcCC-CH
Q 027527 65 PSVSEDTKNLLDTVKVYDVNGNAIPI--SDLWKDRKAVVAFARHFGCVLCRKRADYLAAKKDVMDASGVALVLIGPG-SV 141 (222)
Q Consensus 65 ~~~~~~~g~~apdf~L~D~~G~~v~L--sdl~~~~~vvVvF~R~~~Cp~C~~el~~L~~~~~~l~~~gv~lvaIs~~-s~ 141 (222)
..+...+|+.+|+|++.|.+|+..++ +++. +++++|++||+.|||.|+++++.|++++ +.|+++++|+.+ +.
T Consensus 30 ~~~~~~vG~~ap~f~l~~~~G~~~~~~~~~~~-~gk~vll~F~a~wC~~C~~~~p~l~~l~----~~~~~vi~V~~~~~~ 104 (173)
T TIGR00385 30 ALPSALIGKPVPAFPLAALREPLQAYTPEAFI-QGKPVLLNVWASWCPPCRAEHPYLNELA----KDGLPIVGVDYKDQS 104 (173)
T ss_pred cCcchhcCCCCCCccccccCCCCcccCHHHhc-CCCEEEEEEECCcCHHHHHHHHHHHHHH----HcCCEEEEEECCCCh
Confidence 34456789999999999999984444 4554 4467788888999999999999987665 458999999975 44
Q ss_pred HHHHHHHHHcCCCCc-eeecCChHHHHHcCCccccceee
Q 027527 142 EQARTFSEQTKFKGE-VYADPNHSSYEALSFVSGVLVTF 179 (222)
Q Consensus 142 ~~i~~f~~~~~~pfp-il~Dpd~~lyk~lGl~~~~~~~~ 179 (222)
+..++|+++++++|+ ++.|+++.+.+.||+...+...+
T Consensus 105 ~~~~~~~~~~~~~f~~v~~D~~~~~~~~~~v~~~P~~~~ 143 (173)
T TIGR00385 105 QNALKFLKELGNPYQAILIDPNGKLGLDLGVYGAPETFL 143 (173)
T ss_pred HHHHHHHHHcCCCCceEEECCCCchHHhcCCeeCCeEEE
Confidence 677899999999998 67899999999999877664433
No 39
>cd02967 mauD Methylamine utilization (mau) D family; mauD protein is the translation product of the mauD gene found in methylotrophic bacteria, which are able to use methylamine as a sole carbon source and a nitrogen source. mauD is an essential accessory protein for the biosynthesis of methylamine dehydrogenase (MADH), the enzyme that catalyzes the oxidation of methylamine and other primary amines. MADH possesses an alpha2beta2 subunit structure; the alpha subunit is also referred to as the large subunit. Each beta (small) subunit contains a tryptophan tryptophylquinone (TTQ) prosthetic group. Accessory proteins are essential for the proper transport of MADH to the periplasm, TTQ synthesis and the formation of several structural disulfide bonds. Bacterial mutants containing an insertion on the mauD gene were unable to grow on methylamine as a sole carbon source, were found to lack the MADH small subunit and had decreased amounts of the MADH large subunit.
Probab=99.62 E-value=6e-15 Score=112.16 Aligned_cols=100 Identities=13% Similarity=0.161 Sum_probs=83.4
Q ss_pred CCcEEecCCCCeEeCCCccCCCeEEEEEEcCCCChhHHHHHHHHHHhHHHHHhCCCEEEEEcCCCHHHHHHHHHHcCCC-
Q 027527 76 DTVKVYDVNGNAIPISDLWKDRKAVVAFARHFGCVLCRKRADYLAAKKDVMDASGVALVLIGPGSVEQARTFSEQTKFK- 154 (222)
Q Consensus 76 pdf~L~D~~G~~v~Lsdl~~~~~vvVvF~R~~~Cp~C~~el~~L~~~~~~l~~~gv~lvaIs~~s~~~i~~f~~~~~~p- 154 (222)
|+|++.|.+|+.++|+++. +++.+|++||+.||+.|+++++.|+++++++ +.++.+++|+.++.+..++|+++++++
T Consensus 1 p~f~l~~~~G~~~~l~~~~-~gk~vvl~F~~~wC~~C~~~~p~l~~~~~~~-~~~~~vi~v~~~~~~~~~~~~~~~~~~~ 78 (114)
T cd02967 1 PTFDLTTIDGAPVRIGGIS-PGRPTLLFFLSPTCPVCKKLLPVIRSIARAE-ADWLDVVLASDGEKAEHQRFLKKHGLEA 78 (114)
T ss_pred CCceeecCCCCEEEccccc-CCCeEEEEEECCCCcchHhHhHHHHHHHHHh-cCCcEEEEEeCCCHHHHHHHHHHhCCCC
Confidence 7899999999999999974 3456677788999999999999999988776 446888999888889999999999996
Q ss_pred CceeecCChHHHHHcCCccccceee
Q 027527 155 GEVYADPNHSSYEALSFVSGVLVTF 179 (222)
Q Consensus 155 fpil~Dpd~~lyk~lGl~~~~~~~~ 179 (222)
+|++.| ..+.+.||+...+...+
T Consensus 79 ~p~~~~--~~~~~~~~~~~~P~~~v 101 (114)
T cd02967 79 FPYVLS--AELGMAYQVSKLPYAVL 101 (114)
T ss_pred CcEEec--HHHHhhcCCCCcCeEEE
Confidence 898774 46888999876655444
No 40
>cd03010 TlpA_like_DsbE TlpA-like family, DsbE (also known as CcmG and CycY) subfamily; DsbE is a membrane-anchored, periplasmic TRX-like reductase containing a CXXC motif that specifically donates reducing equivalents to apocytochrome c via CcmH, another cytochrome c maturation (Ccm) factor with a redox active CXXC motif. Assembly of cytochrome c requires the ligation of heme to reduced thiols of the apocytochrome. In bacteria, this assembly occurs in the periplasm. The reductase activity of DsbE in the oxidizing environment of the periplasm is crucial in the maturation of cytochrome c.
Probab=99.60 E-value=6e-15 Score=114.71 Aligned_cols=102 Identities=18% Similarity=0.098 Sum_probs=85.8
Q ss_pred CcCCCcEEecCCC--CeEeCCCccCCCeEEEEEEcCCCChhHHHHHHHHHHhHHHHHhCCCEEEEEcC-CCHHHHHHHHH
Q 027527 73 NLLDTVKVYDVNG--NAIPISDLWKDRKAVVAFARHFGCVLCRKRADYLAAKKDVMDASGVALVLIGP-GSVEQARTFSE 149 (222)
Q Consensus 73 ~~apdf~L~D~~G--~~v~Lsdl~~~~~vvVvF~R~~~Cp~C~~el~~L~~~~~~l~~~gv~lvaIs~-~s~~~i~~f~~ 149 (222)
+++|+|++.|.+| +.++++++ ++ +.+|+.||+.|||.|+++++.|+++.++. ++++|+|+. ++.+.+++|++
T Consensus 1 ~~~p~f~~~~~~g~~~~~~~~~~-~g-k~vvv~F~a~~C~~C~~~~~~l~~l~~~~---~~~vv~v~~~~~~~~~~~~~~ 75 (127)
T cd03010 1 KPAPAFSLPALPGPDKTLTSADL-KG-KPYLLNVWASWCAPCREEHPVLMALARQG---RVPIYGINYKDNPENALAWLA 75 (127)
T ss_pred CCCCCcccccccCCCccccHHHc-CC-CEEEEEEEcCcCHHHHHHHHHHHHHHHhc---CcEEEEEECCCCHHHHHHHHH
Confidence 3689999999999 88999887 34 45666777999999999999999987653 599999996 56689999999
Q ss_pred HcCCCCc-eeecCChHHHHHcCCccccceee
Q 027527 150 QTKFKGE-VYADPNHSSYEALSFVSGVLVTF 179 (222)
Q Consensus 150 ~~~~pfp-il~Dpd~~lyk~lGl~~~~~~~~ 179 (222)
+++++|+ +++|++..+.+.||+...+...+
T Consensus 76 ~~~~~~~~~~~D~~~~~~~~~~v~~~P~~~~ 106 (127)
T cd03010 76 RHGNPYAAVGFDPDGRVGIDLGVYGVPETFL 106 (127)
T ss_pred hcCCCCceEEECCcchHHHhcCCCCCCeEEE
Confidence 9999986 77999999999999987764444
No 41
>cd02966 TlpA_like_family TlpA-like family; composed of TlpA, ResA, DsbE and similar proteins. TlpA, ResA and DsbE are bacterial protein disulfide reductases with important roles in cytochrome maturation. They are membrane-anchored proteins with a soluble TRX domain containing a CXXC motif located in the periplasm. The TRX domains of this family contain an insert, approximately 25 residues in length, which correspond to an extra alpha helix and a beta strand when compared with TRX. TlpA catalyzes an essential reaction in the biogenesis of cytochrome aa3, while ResA and DsbE are essential proteins in cytochrome c maturation. Also included in this family are proteins containing a TlpA-like TRX domain with domain architectures similar to E. coli DipZ protein, and the N-terminal TRX domain of PilB protein from Neisseria which acts as a disulfide reductase that can recylce methionine sulfoxide reductases.
Probab=99.59 E-value=1.3e-14 Score=107.38 Aligned_cols=101 Identities=20% Similarity=0.216 Sum_probs=90.7
Q ss_pred CcEEecCCCCeEeCCCccCCCeEEEEEEcCCCChhHHHHHHHHHHhHHHHHhCCCEEEEEcCCC--HHHHHHHHHHcCCC
Q 027527 77 TVKVYDVNGNAIPISDLWKDRKAVVAFARHFGCVLCRKRADYLAAKKDVMDASGVALVLIGPGS--VEQARTFSEQTKFK 154 (222)
Q Consensus 77 df~L~D~~G~~v~Lsdl~~~~~vvVvF~R~~~Cp~C~~el~~L~~~~~~l~~~gv~lvaIs~~s--~~~i~~f~~~~~~p 154 (222)
+|++.|.+|+.+++.++. ++.+|++|++.||+.|++.++.|.++.+++.+.++.+++|+.+. .+.+++|.++++.+
T Consensus 1 ~~~~~~~~g~~~~~~~~~--~k~~ll~f~~~~C~~C~~~~~~l~~~~~~~~~~~~~~~~v~~d~~~~~~~~~~~~~~~~~ 78 (116)
T cd02966 1 DFSLPDLDGKPVSLSDLK--GKVVLVNFWASWCPPCRAEMPELEALAKEYKDDGVEVVGVNVDDDDPAAVKAFLKKYGIT 78 (116)
T ss_pred CccccCCCCCEeehHHcC--CCEEEEEeecccChhHHHHhHHHHHHHHHhCCCCeEEEEEECCCCCHHHHHHHHHHcCCC
Confidence 578899999999999973 46778888899999999999999999999988899999999987 89999999999999
Q ss_pred CceeecCChHHHHHcCCccccceee
Q 027527 155 GEVYADPNHSSYEALSFVSGVLVTF 179 (222)
Q Consensus 155 fpil~Dpd~~lyk~lGl~~~~~~~~ 179 (222)
++++.|++..+.+.||+...+...+
T Consensus 79 ~~~~~~~~~~~~~~~~~~~~P~~~l 103 (116)
T cd02966 79 FPVLLDPDGELAKAYGVRGLPTTFL 103 (116)
T ss_pred cceEEcCcchHHHhcCcCccceEEE
Confidence 9999999999999999986665433
No 42
>cd03011 TlpA_like_ScsD_MtbDsbE TlpA-like family, suppressor for copper sensitivity D protein (ScsD) and actinobacterial DsbE homolog subfamily; composed of ScsD, the DsbE homolog of Mycobacterium tuberculosis (MtbDsbE) and similar proteins, all containing a redox-active CXXC motif. The Salmonella typhimurium ScsD is a thioredoxin-like protein which confers copper tolerance to copper-sensitive mutants of E. coli. MtbDsbE has been characterized as an oxidase in vitro, catalyzing the disulfide bond formation of substrates like hirudin. The reduced form of MtbDsbE is more stable than its oxidized form, consistent with an oxidase function. This is in contrast to the function of DsbE from gram-negative bacteria which is a specific reductase of apocytochrome c.
Probab=99.54 E-value=4.5e-14 Score=108.71 Aligned_cols=97 Identities=12% Similarity=0.172 Sum_probs=83.8
Q ss_pred CCcEEecCCCCeEeCCCccCCCeEEEEEEcCCCChhHHHHHHHHHHhHHHHHhCCCEEEEEcCC--CHHHHHHHHHHcCC
Q 027527 76 DTVKVYDVNGNAIPISDLWKDRKAVVAFARHFGCVLCRKRADYLAAKKDVMDASGVALVLIGPG--SVEQARTFSEQTKF 153 (222)
Q Consensus 76 pdf~L~D~~G~~v~Lsdl~~~~~vvVvF~R~~~Cp~C~~el~~L~~~~~~l~~~gv~lvaIs~~--s~~~i~~f~~~~~~ 153 (222)
|+|++.|.+|+.+++.++ ++ +.+|++|++.||+.|+.+++.|++++++ +++++|+.+ +++.+++|.+++++
T Consensus 1 p~f~l~~~~g~~~~~~~~-~~-k~~vl~F~~~~C~~C~~~~~~l~~~~~~-----~~~i~i~~~~~~~~~~~~~~~~~~~ 73 (123)
T cd03011 1 PLFTATTLDGEQFDLESL-SG-KPVLVYFWATWCPVCRFTSPTVNQLAAD-----YPVVSVALRSGDDGAVARFMQKKGY 73 (123)
T ss_pred CCceeecCCCCEeeHHHh-CC-CEEEEEEECCcChhhhhhChHHHHHHhh-----CCEEEEEccCCCHHHHHHHHHHcCC
Confidence 789999999999999996 34 5677777799999999999999999876 566777654 57899999999999
Q ss_pred CCceeecCChHHHHHcCCccccceee
Q 027527 154 KGEVYADPNHSSYEALSFVSGVLVTF 179 (222)
Q Consensus 154 pfpil~Dpd~~lyk~lGl~~~~~~~~ 179 (222)
+|+++.|++.++.+.|++...+...+
T Consensus 74 ~~~~~~d~~~~~~~~~~i~~~P~~~v 99 (123)
T cd03011 74 GFPVINDPDGVISARWGVSVTPAIVI 99 (123)
T ss_pred CccEEECCCcHHHHhCCCCcccEEEE
Confidence 99999999999999999988776555
No 43
>PRK10606 btuE putative glutathione peroxidase; Provisional
Probab=99.50 E-value=6.5e-14 Score=117.60 Aligned_cols=95 Identities=15% Similarity=0.221 Sum_probs=80.5
Q ss_pred CcCCCcEEecCCCCeEeCCCccCCCeEEEEEEcCCCChhHHHHHHHHHHhHHHHHhCCCEEEEEcC--------CCHHHH
Q 027527 73 NLLDTVKVYDVNGNAIPISDLWKDRKAVVAFARHFGCVLCRKRADYLAAKKDVMDASGVALVLIGP--------GSVEQA 144 (222)
Q Consensus 73 ~~apdf~L~D~~G~~v~Lsdl~~~~~vvVvF~R~~~Cp~C~~el~~L~~~~~~l~~~gv~lvaIs~--------~s~~~i 144 (222)
+.+.+|++.|.+|+.++|+++ ++ ++|||.++++||++|. +++.|+++++++++.|+.|++|.+ ++.+++
T Consensus 3 ~~~~~f~~~~~~G~~v~Ls~~-~G-KvvLVvf~AS~C~~~~-q~~~L~~L~~~y~~~gl~Vlg~p~nqf~~qe~~~~~ei 79 (183)
T PRK10606 3 DSILTTVVTTIDGEVTTLEKY-AG-NVLLIVNVASKCGLTP-QYEQLENIQKAWADQGFVVLGFPCNQFLGQEPGSDEEI 79 (183)
T ss_pred CCccCcEeECCCCCEEeHHHh-CC-CEEEEEEEeCCCCCcH-HHHHHHHHHHHHhhCCeEEEEeeccccccCCCCCHHHH
Confidence 458899999999999999997 34 5677777999999995 799999999999999999999987 577899
Q ss_pred HHHHH-HcCCCCceeecCC------hHHHHHcC
Q 027527 145 RTFSE-QTKFKGEVYADPN------HSSYEALS 170 (222)
Q Consensus 145 ~~f~~-~~~~pfpil~Dpd------~~lyk~lG 170 (222)
++|++ +++++||++.|-+ ..+|+-|.
T Consensus 80 ~~f~~~~~g~~Fpv~~k~dvnG~~~~pl~~~Lk 112 (183)
T PRK10606 80 KTYCRTTWGVTFPMFSKIEVNGEGRHPLYQKLI 112 (183)
T ss_pred HHHHHHccCCCceeEEEEccCCCCCCHHHHHHH
Confidence 99997 7999999994432 44677664
No 44
>COG0450 AhpC Peroxiredoxin [Posttranslational modification, protein turnover, chaperones]
Probab=99.49 E-value=1.5e-13 Score=115.55 Aligned_cols=104 Identities=17% Similarity=0.198 Sum_probs=96.0
Q ss_pred ccccCcCCCcEEecC-CCC---eEeCCCccCCCeEEEEEEcCCCChhHHHHHHHHHHhHHHHHhCCCEEEEEcCCCHHHH
Q 027527 69 EDTKNLLDTVKVYDV-NGN---AIPISDLWKDRKAVVAFARHFGCVLCRKRADYLAAKKDVMDASGVALVLIGPGSVEQA 144 (222)
Q Consensus 69 ~~~g~~apdf~L~D~-~G~---~v~Lsdl~~~~~vvVvF~R~~~Cp~C~~el~~L~~~~~~l~~~gv~lvaIs~~s~~~i 144 (222)
.-+|+++|+|++... .|+ +++|+|+.+ +.+|++|++..+.|.|--|+.++++.+++|+++|++|++||.|+....
T Consensus 3 ~lIg~~aP~F~~~a~~~~~~~~~i~l~d~~g-kw~VLff~P~DFTfVCpTEi~af~~~y~eF~~~g~eVigvS~Ds~fsH 81 (194)
T COG0450 3 SLIGKKAPDFTANAVLGGEIFEEITLSDYYG-KWVVLFFYPADFTFVCPTEIIAFAKRYEEFQKRGVEVIGVSTDSVFSH 81 (194)
T ss_pred cccCCcCCCcEEEEEecCceeeEEechhhcC-cEEEEEeccCCCCccCcchHHHHHhhhHHHHHcCCEEEEEecCcHHHH
Confidence 467999999999887 775 999999876 899999999999999999999999999999999999999999999999
Q ss_pred HHHHHH----cC---CCCceeecCChHHHHHcCCcc
Q 027527 145 RTFSEQ----TK---FKGEVYADPNHSSYEALSFVS 173 (222)
Q Consensus 145 ~~f~~~----~~---~pfpil~Dpd~~lyk~lGl~~ 173 (222)
.+|.+. .+ ++||+++|+++++.++|||..
T Consensus 82 ~aW~~~~~~~~gi~~i~~PmiaD~~~~vs~~ygvl~ 117 (194)
T COG0450 82 KAWKATIREAGGIGKIKFPMIADPKGEIARAYGVLH 117 (194)
T ss_pred HHHHhcHHhcCCccceecceEEcCchhHHHHcCCcc
Confidence 998876 55 789999999999999999965
No 45
>PRK14018 trifunctional thioredoxin/methionine sulfoxide reductase A/B protein; Provisional
Probab=99.47 E-value=4.6e-13 Score=128.03 Aligned_cols=106 Identities=12% Similarity=0.071 Sum_probs=91.7
Q ss_pred CccccCcCCCcEEecCCCCeEeCCCccCCCeEEEEEEcCCCChhHHHHHHHHHHhHHHHHhCCCEEEEEcCC------CH
Q 027527 68 SEDTKNLLDTVKVYDVNGNAIPISDLWKDRKAVVAFARHFGCVLCRKRADYLAAKKDVMDASGVALVLIGPG------SV 141 (222)
Q Consensus 68 ~~~~g~~apdf~L~D~~G~~v~Lsdl~~~~~vvVvF~R~~~Cp~C~~el~~L~~~~~~l~~~gv~lvaIs~~------s~ 141 (222)
...+++.+|+|++.|.+|+.+.++ .+++|||+||++||++|+++++.|++++++++..+++||+|..+ +.
T Consensus 31 ~~~~~~~lP~f~l~D~dG~~v~ls----kGKpVvV~FWATWCppCk~emP~L~eL~~e~k~~~v~VI~Vs~~~~~~e~~~ 106 (521)
T PRK14018 31 TATVPHTLSTLKTADNRPASVYLK----KDKPTLIKFWASWCPLCLSELGETEKWAQDAKFSSANLITVASPGFLHEKKD 106 (521)
T ss_pred cccccCCCCCeEeecCCCceeecc----CCCEEEEEEEcCCCHHHHHHHHHHHHHHHHhccCCeEEEEEecccccccccH
Confidence 356778899999999999999987 34678999999999999999999999999998788999999752 34
Q ss_pred HHHHHHHHHcCCC-CceeecCChHHHHHcCCccccce
Q 027527 142 EQARTFSEQTKFK-GEVYADPNHSSYEALSFVSGVLV 177 (222)
Q Consensus 142 ~~i~~f~~~~~~p-fpil~Dpd~~lyk~lGl~~~~~~ 177 (222)
+.+++|.+..+++ ++++.|++..+.+.||+...+..
T Consensus 107 ~~~~~~~~~~~y~~~pV~~D~~~~lak~fgV~giPTt 143 (521)
T PRK14018 107 GDFQKWYAGLDYPKLPVLTDNGGTLAQSLNISVYPSW 143 (521)
T ss_pred HHHHHHHHhCCCcccceeccccHHHHHHcCCCCcCeE
Confidence 6777888887875 79999999999999999877765
No 46
>cd03009 TryX_like_TryX_NRX Tryparedoxin (TryX)-like family, TryX and nucleoredoxin (NRX) subfamily; TryX and NRX are thioredoxin (TRX)-like protein disulfide oxidoreductases that alter the redox state of target proteins via the reversible oxidation of an active center CXXC motif. TryX is involved in the regulation of oxidative stress in parasitic trypanosomatids by reducing TryX peroxidase, which in turn catalyzes the reduction of hydrogen peroxide and organic hydroperoxides. TryX derives reducing equivalents from reduced trypanothione, a polyamine peptide conjugate unique to trypanosomatids, which is regenerated by the NADPH-dependent flavoprotein trypanothione reductase. Vertebrate NRX is a 400-amino acid nuclear protein with one redox active TRX domain containing a CPPC active site motif followed by one redox inactive TRX-like domain. Mouse NRX transcripts are expressed in all adult tissues but is restricted to the nervous system and limb buds in embryos. Plant NRX, longer than the
Probab=99.42 E-value=4.1e-13 Score=105.03 Aligned_cols=98 Identities=14% Similarity=0.158 Sum_probs=79.0
Q ss_pred EecCCCCeEeCCCccCCCeEEEEEEcCCCChhHHHHHHHHHHhHHHHHhC--CCEEEEEcCCCH-HHHHHHHHHcC---C
Q 027527 80 VYDVNGNAIPISDLWKDRKAVVAFARHFGCVLCRKRADYLAAKKDVMDAS--GVALVLIGPGSV-EQARTFSEQTK---F 153 (222)
Q Consensus 80 L~D~~G~~v~Lsdl~~~~~vvVvF~R~~~Cp~C~~el~~L~~~~~~l~~~--gv~lvaIs~~s~-~~i~~f~~~~~---~ 153 (222)
|.|.+|+.++|+++ .++++|++||++||+.|+++++.|+++++++.+. +++|++|+.+.. +..++|.++.+ +
T Consensus 3 l~~~~G~~v~l~~~--~gk~vll~Fwa~wC~~C~~~~p~l~~~~~~~~~~~~~~~vv~is~d~~~~~~~~~~~~~~~~~~ 80 (131)
T cd03009 3 LLRNDGGKVPVSSL--EGKTVGLYFSASWCPPCRAFTPKLVEFYEKLKESGKNFEIVFISWDRDEESFNDYFSKMPWLAV 80 (131)
T ss_pred ccccCCCCccHHHh--CCcEEEEEEECCCChHHHHHhHHHHHHHHHHHhcCCCEEEEEEECCCCHHHHHHHHHcCCeeEc
Confidence 56899999999997 3457899999999999999999999999999765 799999998855 56777877654 3
Q ss_pred CCceeecCChHHHHHcCCccccceeec
Q 027527 154 KGEVYADPNHSSYEALSFVSGVLVTFT 180 (222)
Q Consensus 154 pfpil~Dpd~~lyk~lGl~~~~~~~~~ 180 (222)
+|+. .|.+..+.+.||+...+...+-
T Consensus 81 ~~~~-~~~~~~~~~~~~v~~~P~~~li 106 (131)
T cd03009 81 PFSD-RERRSRLNRTFKIEGIPTLIIL 106 (131)
T ss_pred ccCC-HHHHHHHHHHcCCCCCCEEEEE
Confidence 3332 3666889999999877766553
No 47
>cd03008 TryX_like_RdCVF Tryparedoxin (TryX)-like family, Rod-derived cone viability factor (RdCVF) subfamily; RdCVF is a thioredoxin (TRX)-like protein specifically expressed in photoreceptors. RdCVF was isolated and identified as a factor that supports cone survival in retinal cultures. Cone photoreceptor loss is responsible for the visual handicap resulting from the inherited disease, retinitis pigmentosa. RdCVF shows 33% similarity to TRX but does not exhibit any detectable thiol oxidoreductase activity.
Probab=99.40 E-value=1.1e-12 Score=106.65 Aligned_cols=91 Identities=14% Similarity=0.066 Sum_probs=73.5
Q ss_pred eEeCCCccCCCeEEEEEEcCCCChhHHHHHHHHHHhHHHHHhC-------CCEEEEEcCCCH-HHHHHHHHHcCCCC---
Q 027527 87 AIPISDLWKDRKAVVAFARHFGCVLCRKRADYLAAKKDVMDAS-------GVALVLIGPGSV-EQARTFSEQTKFKG--- 155 (222)
Q Consensus 87 ~v~Lsdl~~~~~vvVvF~R~~~Cp~C~~el~~L~~~~~~l~~~-------gv~lvaIs~~s~-~~i~~f~~~~~~pf--- 155 (222)
.++|+++ .+++|++.||++|||+|+++++.|.++++++.+. ++.+|+|+.|.. +.+++|.++.++++
T Consensus 17 ~~~ls~~--kgk~vlL~FwAsWCppCr~e~P~L~~ly~~~~~~~~~~~~~~~~vV~Vs~D~~~~~~~~f~~~~~~~~~~~ 94 (146)
T cd03008 17 REIVARL--ENRVLLLFFGAVVSPQCQLFAPKLKDFFVRLTDEFYVDRSAQLALVYVSMDQSEQQQESFLKDMPKKWLFL 94 (146)
T ss_pred cccHHHh--CCCEEEEEEECCCChhHHHHHHHHHHHHHHHHhhcccccCCCEEEEEEECCCCHHHHHHHHHHCCCCceee
Confidence 5677887 4578999999999999999999999999988654 799999999854 56899999999654
Q ss_pred ceeecCChHHHHHcCCccccceee
Q 027527 156 EVYADPNHSSYEALSFVSGVLVTF 179 (222)
Q Consensus 156 pil~Dpd~~lyk~lGl~~~~~~~~ 179 (222)
++..|.+..+.+.||+..-+...+
T Consensus 95 p~~~~~~~~l~~~y~v~~iPt~vl 118 (146)
T cd03008 95 PFEDEFRRELEAQFSVEELPTVVV 118 (146)
T ss_pred cccchHHHHHHHHcCCCCCCEEEE
Confidence 334344678999999977766555
No 48
>PLN02919 haloacid dehalogenase-like hydrolase family protein
Probab=99.39 E-value=1.1e-12 Score=134.52 Aligned_cols=112 Identities=15% Similarity=0.118 Sum_probs=96.3
Q ss_pred CCCccccCcCCCcEEec--CCCCeEeCC-CccCCCeEEEEEEcCCCChhHHHHHHHHHHhHHHHHhCCCEEEEEcC---C
Q 027527 66 SVSEDTKNLLDTVKVYD--VNGNAIPIS-DLWKDRKAVVAFARHFGCVLCRKRADYLAAKKDVMDASGVALVLIGP---G 139 (222)
Q Consensus 66 ~~~~~~g~~apdf~L~D--~~G~~v~Ls-dl~~~~~vvVvF~R~~~Cp~C~~el~~L~~~~~~l~~~gv~lvaIs~---~ 139 (222)
+.....|+.+|+|...+ .+|++++|. ++ .+++||+.||++||++|+.+++.|+++++++++.++.+|+|.. +
T Consensus 388 ~~~~~~g~~~p~f~~~~~~~~g~~~~l~~~l--kGK~vll~FWAsWC~pC~~e~P~L~~l~~~y~~~~~~vvgV~~~~~D 465 (1057)
T PLN02919 388 LESKKTATKVPEFPPKLDWLNTAPLQFRRDL--KGKVVILDFWTYCCINCMHVLPDLEFLEKKYKDQPFTVVGVHSAKFD 465 (1057)
T ss_pred hhccccCCcCCCCcccccccCCccccchhhc--CCCEEEEEEECCcChhHHhHhHHHHHHHHHcCCCCeEEEEEeccccc
Confidence 44456799999999876 789999984 65 3568999999999999999999999999999989999999963 2
Q ss_pred ---CHHHHHHHHHHcCCCCceeecCChHHHHHcCCccccceee
Q 027527 140 ---SVEQARTFSEQTKFKGEVYADPNHSSYEALSFVSGVLVTF 179 (222)
Q Consensus 140 ---s~~~i~~f~~~~~~pfpil~Dpd~~lyk~lGl~~~~~~~~ 179 (222)
+.+.+++|.++++++||++.|.+.++.+.|++...+...+
T Consensus 466 ~~~~~~~~~~~~~~~~i~~pvv~D~~~~~~~~~~V~~iPt~il 508 (1057)
T PLN02919 466 NEKDLEAIRNAVLRYNISHPVVNDGDMYLWRELGVSSWPTFAV 508 (1057)
T ss_pred ccccHHHHHHHHHHhCCCccEEECCchHHHHhcCCCccceEEE
Confidence 4578899999999999999999999999999977665544
No 49
>cd02964 TryX_like_family Tryparedoxin (TryX)-like family; composed of TryX and related proteins including nucleoredoxin (NRX), rod-derived cone viability factor (RdCVF) and the nematode homolog described as a 16-kD class of TRX. Most members of this family, except RdCVF, are protein disulfide oxidoreductases containing an active site CXXC motif, similar to TRX.
Probab=99.31 E-value=8.3e-12 Score=98.20 Aligned_cols=96 Identities=14% Similarity=0.164 Sum_probs=75.1
Q ss_pred EecCCCCeEeCCCccCCCeEEEEEEcCCCChhHHHHHHHHHHhHHHHHhC--CCEEEEEcCCC-HHHHHHHHHHcCCCCc
Q 027527 80 VYDVNGNAIPISDLWKDRKAVVAFARHFGCVLCRKRADYLAAKKDVMDAS--GVALVLIGPGS-VEQARTFSEQTKFKGE 156 (222)
Q Consensus 80 L~D~~G~~v~Lsdl~~~~~vvVvF~R~~~Cp~C~~el~~L~~~~~~l~~~--gv~lvaIs~~s-~~~i~~f~~~~~~pfp 156 (222)
|.|.+ ++++++++ .++++|++||++||+.|+++++.|+++++++.+. +++|++|+.+. .+.+++|.++++ ++.
T Consensus 3 ~~~~~-~~v~l~~~--~Gk~vll~F~atwC~~C~~~~p~l~~l~~~~~~~~~~v~vi~Vs~d~~~~~~~~~~~~~~-~~~ 78 (132)
T cd02964 3 LLDGE-GVVPVSAL--EGKTVGLYFSASWCPPCRAFTPKLVEFYEKLKEEGKNFEIVFVSRDRSEESFNEYFSEMP-PWL 78 (132)
T ss_pred cccCC-ccccHHHh--CCCEEEEEEECCCCchHHHHHHHHHHHHHHHhhcCCCeEEEEEecCCCHHHHHHHHhcCC-CeE
Confidence 34544 59999997 3578999999999999999999999999999775 89999999874 468899999986 433
Q ss_pred --eeec--CChHHHHHcCCccccceee
Q 027527 157 --VYAD--PNHSSYEALSFVSGVLVTF 179 (222)
Q Consensus 157 --il~D--pd~~lyk~lGl~~~~~~~~ 179 (222)
.+.| ....+.+.||+...+...+
T Consensus 79 ~~~~~d~~~~~~~~~~~~v~~iPt~~l 105 (132)
T cd02964 79 AVPFEDEELRELLEKQFKVEGIPTLVV 105 (132)
T ss_pred eeccCcHHHHHHHHHHcCCCCCCEEEE
Confidence 2344 2346677899877766654
No 50
>PRK13728 conjugal transfer protein TrbB; Provisional
Probab=99.21 E-value=6.3e-11 Score=99.41 Aligned_cols=82 Identities=12% Similarity=0.069 Sum_probs=67.6
Q ss_pred cccCcCCCcEEecCCCCeEeCCCccCCCeEEEEEEcCCCChhHHHHHHHHHHhHHHHHhCCCEEEEEcCCCHHHHHHHHH
Q 027527 70 DTKNLLDTVKVYDVNGNAIPISDLWKDRKAVVAFARHFGCVLCRKRADYLAAKKDVMDASGVALVLIGPGSVEQARTFSE 149 (222)
Q Consensus 70 ~~g~~apdf~L~D~~G~~v~Lsdl~~~~~vvVvF~R~~~Cp~C~~el~~L~~~~~~l~~~gv~lvaIs~~s~~~i~~f~~ 149 (222)
.....-++|++. +|+.++++++. |++||++|||+|+++++.|+++++++ |+.|++|+.|...
T Consensus 50 ~~~~~~~~f~l~--dG~~v~lsd~~------lV~FwaswCp~C~~e~P~L~~l~~~~---g~~Vi~Vs~D~~~------- 111 (181)
T PRK13728 50 TEKPAPRWFRLS--NGRQVNLADWK------VVLFMQGHCPYCHQFDPVLKQLAQQY---GFSVFPYTLDGQG------- 111 (181)
T ss_pred cCCCCCCccCCC--CCCEeehhHce------EEEEECCCCHhHHHHHHHHHHHHHHc---CCEEEEEEeCCCC-------
Confidence 344567888884 99999999972 66799999999999999999998886 7999999987442
Q ss_pred HcCCCCceeec-CChHHHHHcCC
Q 027527 150 QTKFKGEVYAD-PNHSSYEALSF 171 (222)
Q Consensus 150 ~~~~pfpil~D-pd~~lyk~lGl 171 (222)
...||++.| ++..+.+.||.
T Consensus 112 --~~~fPv~~dd~~~~~~~~~g~ 132 (181)
T PRK13728 112 --DTAFPEALPAPPDVMQTFFPN 132 (181)
T ss_pred --CCCCceEecCchhHHHHHhCC
Confidence 368999985 67788888984
No 51
>KOG0854 consensus Alkyl hydroperoxide reductase, thiol specific antioxidant and related enzymes [Posttranslational modification, protein turnover, chaperones]
Probab=99.20 E-value=6.7e-11 Score=98.42 Aligned_cols=105 Identities=16% Similarity=0.163 Sum_probs=93.2
Q ss_pred CCCccccCcCCCcEEecCCCCeEeCCCccCCCeEEEEEEcCCCChhHHHHHHHHHHhHHHHHhCCCEEEEEcCCCHH---
Q 027527 66 SVSEDTKNLLDTVKVYDVNGNAIPISDLWKDRKAVVAFARHFGCVLCRKRADYLAAKKDVMDASGVALVLIGPGSVE--- 142 (222)
Q Consensus 66 ~~~~~~g~~apdf~L~D~~G~~v~Lsdl~~~~~vvVvF~R~~~Cp~C~~el~~L~~~~~~l~~~gv~lvaIs~~s~~--- 142 (222)
.+....|+.+|+|+.....| .++|.|++++.+.|++-..+.+.|.|.-|+..++++.++|+++|+++++.++|+.+
T Consensus 3 ~~~l~lgd~~PNfea~Tt~g-~i~fhd~~gdSW~vLFSHPaDFTPVCTTElgr~Akl~pEF~KRnvKlialS~d~vesH~ 81 (224)
T KOG0854|consen 3 GPRLRLGDTVPNFEADTTVG-KIKFHDYLGDSWGVLFSHPADFTPVCTTELGRFAKLAPEFDKRNVKLIALSVDDVESHK 81 (224)
T ss_pred CCcccccCcCCCcccccccc-ceehhhhcccceEEEecCcccCCcchhHHHHHHHhhChhhhhcCceEEEeehhhHHHHH
Confidence 45567899999999976666 58999999999999999999999999999999999999999999999999999875
Q ss_pred ----HHHHHHHHcC--CCCceeecCChHHHHHcCC
Q 027527 143 ----QARTFSEQTK--FKGEVYADPNHSSYEALSF 171 (222)
Q Consensus 143 ----~i~~f~~~~~--~pfpil~Dpd~~lyk~lGl 171 (222)
.++.|++... ++|||+.|+++++.-.|||
T Consensus 82 ~Wi~DIks~~~~~~~~~~yPIIaD~~rela~~l~M 116 (224)
T KOG0854|consen 82 DWIKDIKSYAKVKNHSVPYPIIADPNRELAFLLNM 116 (224)
T ss_pred HHHHHHHHHHhccCCCCCCCeecCCchhhhhhhcc
Confidence 4555665555 9999999999999999998
No 52
>TIGR01626 ytfJ_HI0045 conserved hypothetical protein YtfJ-family, TIGR01626. This model represents sequences from gamma proteobacteria that are related to the E. coli protein, YtfJ.
Probab=99.18 E-value=9.4e-11 Score=98.65 Aligned_cols=103 Identities=14% Similarity=0.029 Sum_probs=81.5
Q ss_pred ccccCcCCCcEEecC----------CCCeEeCCCccCCCeEEEEEEcCCCChhHHHHHHHHHHhHHHHHhCCCEE-----
Q 027527 69 EDTKNLLDTVKVYDV----------NGNAIPISDLWKDRKAVVAFARHFGCVLCRKRADYLAAKKDVMDASGVAL----- 133 (222)
Q Consensus 69 ~~~g~~apdf~L~D~----------~G~~v~Lsdl~~~~~vvVvF~R~~~Cp~C~~el~~L~~~~~~l~~~gv~l----- 133 (222)
...|+.+|.+.+.|. +.+..+..++ .+++.||+||+.||+.|+.|++.|.++ +++|+.+
T Consensus 23 ~~~~~~~p~v~~~~~ge~~~~~~~~~y~~~~~~~l--~GKV~lvn~~Aswc~~c~~e~P~l~~l----~~~~~~~~~y~~ 96 (184)
T TIGR01626 23 LQVEQSVPSVGVSEYGEIVLSGKDTVYQPWGSAEL--AGKVRVVHHIAGRTSAKEXNASLIDAI----KAAKFPPVKYQT 96 (184)
T ss_pred hhcCCcCCceEecCCceEEEcCCcccceeccHHHc--CCCEEEEEEEecCCChhhccchHHHHH----HHcCCCcccccc
Confidence 456666666666554 3456666776 378999999999999999999999988 5667888
Q ss_pred -EEEcCCCH-----HHHHHHHHHcCCCCc---eeecCChHHHHHcCCccccce
Q 027527 134 -VLIGPGSV-----EQARTFSEQTKFKGE---VYADPNHSSYEALSFVSGVLV 177 (222)
Q Consensus 134 -vaIs~~s~-----~~i~~f~~~~~~pfp---il~Dpd~~lyk~lGl~~~~~~ 177 (222)
++|..++. ..++.|.++.+..|| ++.|+++.+.++||+...+..
T Consensus 97 t~~IN~dd~~~~~~~fVk~fie~~~~~~P~~~vllD~~g~v~~~~gv~~~P~T 149 (184)
T TIGR01626 97 TTIINADDAIVGTGMFVKSSAKKGKKENPWSQVVLDDKGAVKNAWQLNSEDSA 149 (184)
T ss_pred eEEEECccchhhHHHHHHHHHHHhcccCCcceEEECCcchHHHhcCCCCCCce
Confidence 99998863 346667777787777 999999999999999877666
No 53
>PF13905 Thioredoxin_8: Thioredoxin-like; PDB: 1FG4_A 1I5G_A 1OC8_B 1O6J_A 1OC9_B 1O81_A 3FKF_A 1O85_A 1O7U_A 1O8W_A ....
Probab=99.09 E-value=7.4e-10 Score=81.60 Aligned_cols=83 Identities=14% Similarity=0.132 Sum_probs=67.0
Q ss_pred CeEEEEEEcCCCChhHHHHHHHHHHhHHHHH-hCCCEEEEEcCCCH-HHHHHHHHHcCCCCceeec---CChHHHHHcCC
Q 027527 97 RKAVVAFARHFGCVLCRKRADYLAAKKDVMD-ASGVALVLIGPGSV-EQARTFSEQTKFKGEVYAD---PNHSSYEALSF 171 (222)
Q Consensus 97 ~~vvVvF~R~~~Cp~C~~el~~L~~~~~~l~-~~gv~lvaIs~~s~-~~i~~f~~~~~~pfpil~D---pd~~lyk~lGl 171 (222)
++++++.||+.||+.|+++++.|.++++++. ..++++|+|+.|.. ++.++|.++.+.++..+.. ....+.+.|++
T Consensus 1 gK~~ll~fwa~~c~~c~~~~~~l~~l~~~~~~~~~v~~v~Vs~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~i 80 (95)
T PF13905_consen 1 GKPVLLYFWASWCPPCKKELPKLKELYKKYKKKDDVEFVFVSLDEDEEEWKKFLKKNNFPWYNVPFDDDNNSELLKKYGI 80 (95)
T ss_dssp TSEEEEEEE-TTSHHHHHHHHHHHHHHHHHTTTTTEEEEEEE-SSSHHHHHHHHHTCTTSSEEEETTTHHHHHHHHHTT-
T ss_pred CCEEEEEEECCCCHHHHHHHHHHHHHHHHhCCCCCEEEEEEEeCCCHHHHHHHHHhcCCCceEEeeCcchHHHHHHHCCC
Confidence 3678999999999999999999999999997 78899999999865 7889999998777765443 45788999999
Q ss_pred ccccceee
Q 027527 172 VSGVLVTF 179 (222)
Q Consensus 172 ~~~~~~~~ 179 (222)
...+...+
T Consensus 81 ~~iP~~~l 88 (95)
T PF13905_consen 81 NGIPTLVL 88 (95)
T ss_dssp TSSSEEEE
T ss_pred CcCCEEEE
Confidence 88765544
No 54
>TIGR02738 TrbB type-F conjugative transfer system pilin assembly thiol-disulfide isomerase TrbB. This protein is part of a large group of proteins involved in conjugative transfer of plasmid DNA, specifically the F-type system. This protein has been predicted to contain a thioredoxin fold, contains a conserved pair of cysteines and has been shown to function as a thiol disulfide isomerase by complementation of an Ecoli DsbA defect. The protein is believed to be involved in pilin assembly. The protein is closely related to TraF (TIGR02739) which is somewhat longer, lacks the cysteine motif and is apparently not functional as a disulfide bond isomerase.
Probab=98.73 E-value=2.2e-08 Score=81.89 Aligned_cols=49 Identities=16% Similarity=0.263 Sum_probs=41.6
Q ss_pred CCCeEeCCCccCCCeEEEEEEcCCCChhHHHHHHHHHHhHHHHHhCCCEEEEEcCCCH
Q 027527 84 NGNAIPISDLWKDRKAVVAFARHFGCVLCRKRADYLAAKKDVMDASGVALVLIGPGSV 141 (222)
Q Consensus 84 ~G~~v~Lsdl~~~~~vvVvF~R~~~Cp~C~~el~~L~~~~~~l~~~gv~lvaIs~~s~ 141 (222)
.|+.+.++++ .|++||++|||+|+++++.|+++++++ |+++++|+.++.
T Consensus 43 ~G~~~~l~~~------~lvnFWAsWCppCr~e~P~L~~l~~~~---~~~Vi~Vs~d~~ 91 (153)
T TIGR02738 43 QGRHANQDDY------ALVFFYQSTCPYCHQFAPVLKRFSQQF---GLPVYAFSLDGQ 91 (153)
T ss_pred cchhhhcCCC------EEEEEECCCChhHHHHHHHHHHHHHHc---CCcEEEEEeCCC
Confidence 3778888775 289999999999999999999998876 688999988753
No 55
>COG2077 Tpx Peroxiredoxin [Posttranslational modification, protein turnover, chaperones]
Probab=98.70 E-value=1.1e-07 Score=77.39 Aligned_cols=103 Identities=9% Similarity=0.139 Sum_probs=91.7
Q ss_pred ccccCcCCCcEEecCCCCeEeCCCccCCCeEEEEEEcCCCChhHHHHHHHHHHhHHHHHhCCCEEEEEcCCCHHHHHHHH
Q 027527 69 EDTKNLLDTVKVYDVNGNAIPISDLWKDRKAVVAFARHFGCVLCRKRADYLAAKKDVMDASGVALVLIGPGSVEQARTFS 148 (222)
Q Consensus 69 ~~~g~~apdf~L~D~~G~~v~Lsdl~~~~~vvVvF~R~~~Cp~C~~el~~L~~~~~~l~~~gv~lvaIs~~s~~~i~~f~ 148 (222)
.++|+++|+|++.+.+.+.++|.++ .+++.||..|+.--.|.|-.+++.+++...++. ++.++.||.|-|-..+.||
T Consensus 18 ~~vGd~ap~ftl~~~dL~~v~l~~~-~gk~~vi~v~PSiDT~VC~~qvr~Fn~~aa~~~--~~~Vl~IS~DLPFAq~RfC 94 (158)
T COG2077 18 PQVGDKAPDFTLVGKDLNDVSLADF-AGKKKVISVFPSIDTPVCATQVRKFNEEAAKLG--NTVVLCISMDLPFAQKRFC 94 (158)
T ss_pred CccCCcCCceEEEcCcccceecccc-CCceEEEEEccCCCCchhhHHHHHHHHHHhccC--CcEEEEEeCCChhHHhhhh
Confidence 6899999999999999999999996 577889999999999999999999999888764 4999999999999999999
Q ss_pred HHcCCC-Cceeec-CChHHHHHcCCccc
Q 027527 149 EQTKFK-GEVYAD-PNHSSYEALSFVSG 174 (222)
Q Consensus 149 ~~~~~p-fpil~D-pd~~lyk~lGl~~~ 174 (222)
...|+. .-.++| .++.+.+.||+.-.
T Consensus 95 ~aeGi~nv~~lSd~r~~~Fge~yGv~I~ 122 (158)
T COG2077 95 GAEGIENVITLSDFRDRAFGENYGVLIN 122 (158)
T ss_pred hhcCcccceEhhhhhhhhhhHhhCEEec
Confidence 999999 567888 56778899998543
No 56
>KOG0541 consensus Alkyl hydroperoxide reductase/peroxiredoxin [Posttranslational modification, protein turnover, chaperones]
Probab=98.69 E-value=3.5e-08 Score=80.67 Aligned_cols=113 Identities=13% Similarity=0.168 Sum_probs=95.0
Q ss_pred CCCCccccCcCCC--cEEecCC-----CCeEeCCCccCCCeEEEEEEcCCCChh-HHHHHHHHHHhHHHHHhCCCE-EEE
Q 027527 65 PSVSEDTKNLLDT--VKVYDVN-----GNAIPISDLWKDRKAVVAFARHFGCVL-CRKRADYLAAKKDVMDASGVA-LVL 135 (222)
Q Consensus 65 ~~~~~~~g~~apd--f~L~D~~-----G~~v~Lsdl~~~~~vvVvF~R~~~Cp~-C~~el~~L~~~~~~l~~~gv~-lva 135 (222)
.+...++|+.+|+ +.+.+.+ +.++.+++|.++++++|+=.++.+.|. |..|++-+.+..++|+++||+ |+.
T Consensus 5 ~~a~i~vGd~~p~~~is~~~~~~~~~~~~tv~~~~l~~GKKvIifGvPgAFtPtCs~~HvPGyi~~a~elksKGVd~iic 84 (171)
T KOG0541|consen 5 VMAPIAVGDTLPSGTISLFEDEPEQLQGNTVNVSSLFKGKKVILFGVPGAFTPTCSSSHVPGYIEKADELKSKGVDEIIC 84 (171)
T ss_pred ccccccccCccccccchhhccCccccccceEEhHHhcCCceEEEEcCCCccCCccccccCchHHHHHHHHHhcCCcEEEE
Confidence 3445788999999 5533332 238999999999999999999999999 788999999999999999998 667
Q ss_pred EcCCCHHHHHHHHHHcCCC--CceeecCChHHHHHcCCccccce
Q 027527 136 IGPGSVEQARTFSEQTKFK--GEVYADPNHSSYEALSFVSGVLV 177 (222)
Q Consensus 136 Is~~s~~~i~~f~~~~~~p--fpil~Dpd~~lyk~lGl~~~~~~ 177 (222)
|+.+++-.+++|.+.++-. ..++.|+++++.+.+|+.-....
T Consensus 85 vSVnDpFv~~aW~k~~g~~~~V~f~aD~~g~ftk~lgleld~~d 128 (171)
T KOG0541|consen 85 VSVNDPFVMKAWAKSLGANDHVKFVADPAGEFTKSLGLELDLSD 128 (171)
T ss_pred EecCcHHHHHHHHhhcCccceEEEEecCCCceeeeccceeeecc
Confidence 7889999999999998875 46899999999999999766543
No 57
>KOG0852 consensus Alkyl hydroperoxide reductase, thiol specific antioxidant and related enzymes [Posttranslational modification, protein turnover, chaperones]
Probab=98.68 E-value=1.1e-07 Score=79.14 Aligned_cols=102 Identities=17% Similarity=0.111 Sum_probs=86.5
Q ss_pred ccCcCCCcE---EecCCCCeEeCCCccCCCeEEEEEEcCCCChhHHHHHHHHHHhHHHHHhCCCEEEEEcCCCHHHHHHH
Q 027527 71 TKNLLDTVK---VYDVNGNAIPISDLWKDRKAVVAFARHFGCVLCRKRADYLAAKKDVMDASGVALVLIGPGSVEQARTF 147 (222)
Q Consensus 71 ~g~~apdf~---L~D~~G~~v~Lsdl~~~~~vvVvF~R~~~Cp~C~~el~~L~~~~~~l~~~gv~lvaIs~~s~~~i~~f 147 (222)
+..++|+|. +.|-.-+.++|+++ .++.+|+.|+...+-..|-.|+..+.+.+++|++.|.+|++++.|+.....+|
T Consensus 6 ~~~p~p~fk~~aVVdG~f~e~~L~dy-~gkyvvlfFyplDftfVcPteIiafSd~~~eF~~~n~eVig~S~DS~fshlAW 84 (196)
T KOG0852|consen 6 VFKPAPDFKGTAVVDGEFKEIKLSDY-KGKYVVLFFYPLDFTFVCPTEIIAFSDRAPEFRKLNTEVLGISTDSVFSHLAW 84 (196)
T ss_pred cCCCCCCcceeEEEcCcceEEeehhh-cccEEEEEecCCceeeECchhhhhhhhhHHHHHhcCCeEEEEeccchhhhhhH
Confidence 344556764 66777789999997 46788888888999999999999999999999999999999999999888887
Q ss_pred H----HHcCCC---CceeecCChHHHHHcCCcc
Q 027527 148 S----EQTKFK---GEVYADPNHSSYEALSFVS 173 (222)
Q Consensus 148 ~----~~~~~p---fpil~Dpd~~lyk~lGl~~ 173 (222)
. ++-|+- .|+++|+++++.+.||+-.
T Consensus 85 ~ntprk~gGlg~~~iPllsD~~~~IsrdyGvL~ 117 (196)
T KOG0852|consen 85 INTPRKQGGLGPLNIPLLSDLNHEISRDYGVLK 117 (196)
T ss_pred hcCchhhCCcCccccceeeccchhhHHhcCcee
Confidence 6 444554 8999999999999999843
No 58
>PF02630 SCO1-SenC: SCO1/SenC; InterPro: IPR003782 This family is involved in biogenesis of respiratory and photosynthetic systems. In yeast the SCO1 protein is specifically required for a post-translational step in the accumulation of subunits 1 and 2 of cytochrome c oxidase (COXI and COX-II) []. It is a mitochondrion-associated cytochrome c oxidase assembly factor. The purple nonsulphur photosynthetic eubacterium Rhodobacter capsulatus is a versatile organism that can obtain cellular energy by several means, including the capture of light energy for photosynthesis as well as the use of light-independent respiration, in which molecular oxygen serves as a terminal electron acceptor. The SenC protein is required for optimal cytochrome c oxidase activity in aerobically grown R. capsulatus cells and is involved in the induction of structural polypeptides of the light-harvesting and reaction centre complexes [].; PDB: 2K6V_A 3ME8_A 3ME7_A 2GT6_A 2GQL_A 2GQK_A 2GGT_B 1WP0_C 2HRN_A 2GQM_A ....
Probab=98.57 E-value=4.6e-07 Score=75.16 Aligned_cols=84 Identities=17% Similarity=0.288 Sum_probs=67.5
Q ss_pred ccCcCCCcEEecCCCCeEeCCCccCCCeEEEEEEcCCCCh-hHHHHHHHHHHhHHHHHhC--CCEEEEEcCC----CHHH
Q 027527 71 TKNLLDTVKVYDVNGNAIPISDLWKDRKAVVAFARHFGCV-LCRKRADYLAAKKDVMDAS--GVALVLIGPG----SVEQ 143 (222)
Q Consensus 71 ~g~~apdf~L~D~~G~~v~Lsdl~~~~~vvVvF~R~~~Cp-~C~~el~~L~~~~~~l~~~--gv~lvaIs~~----s~~~ 143 (222)
.....++|+|.|.+|+.+++.++ .++++|++|-.+.|| .|-..+..|++..+++.+. .+++|.|+.| +++.
T Consensus 28 ~~~~~~~f~L~d~~G~~~~~~~~--~Gk~~lv~F~yT~CpdvCp~~l~~l~~~~~~l~~~~~~v~~v~ISvDP~~DTp~~ 105 (174)
T PF02630_consen 28 NPRIVPDFTLTDQDGKTVTLDDL--KGKWVLVFFGYTRCPDVCPTTLANLSQLQKQLGEEGKDVQFVFISVDPERDTPEV 105 (174)
T ss_dssp TSCSSST-EEEETTSSEEEGGGG--TTSEEEEEEE-TTSSSHHHHHHHHHHHHHHHHHHTTTTEEEEEEESSTTTC-HHH
T ss_pred CCccCCCcEEEcCCCCEecHHHh--CCCeEEEEEEEcCCCccCHHHHHHHHHHHHHhhhccCceEEEEEEeCCCCCCHHH
Confidence 45568899999999999999997 456777788899996 8999999999999998764 6889999876 5689
Q ss_pred HHHHHHHcCCCCc
Q 027527 144 ARTFSEQTKFKGE 156 (222)
Q Consensus 144 i~~f~~~~~~pfp 156 (222)
+++|++..+-.+.
T Consensus 106 L~~Y~~~~~~~~~ 118 (174)
T PF02630_consen 106 LKKYAKKFGPDFI 118 (174)
T ss_dssp HHHHHHCHTTTCE
T ss_pred HHHHHHhcCCCcc
Confidence 9999998765554
No 59
>KOG2501 consensus Thioredoxin, nucleoredoxin and related proteins [General function prediction only]
Probab=98.56 E-value=1.1e-07 Score=78.04 Aligned_cols=104 Identities=13% Similarity=0.102 Sum_probs=84.6
Q ss_pred CCCcEEecCCCCeEeCCCccCCCeEEEEEEcCCCChhHHHHHHHHHHhHHHHHhC--CCEEEEEcCCCH-HHHHHHHHHc
Q 027527 75 LDTVKVYDVNGNAIPISDLWKDRKAVVAFARHFGCVLCRKRADYLAAKKDVMDAS--GVALVLIGPGSV-EQARTFSEQT 151 (222)
Q Consensus 75 apdf~L~D~~G~~v~Lsdl~~~~~vvVvF~R~~~Cp~C~~el~~L~~~~~~l~~~--gv~lvaIs~~s~-~~i~~f~~~~ 151 (222)
+....|.+.+|..+..++.+++ ++|.+.|++.|||+||...+.|.++|+++++. .+.||.|+.|.. ++..+|..++
T Consensus 12 ~~g~~l~~~~~~~~~~~~~l~g-KvV~lyFsA~wC~pCR~FTP~Lk~fYe~l~~~~~~fEVvfVS~D~~~~~~~~y~~~~ 90 (157)
T KOG2501|consen 12 LRGNRLRKQDGTEVLASEALQG-KVVGLYFSAHWCPPCRDFTPILKDFYEELKDNAAPFEVVFVSSDRDEESLDEYMLEH 90 (157)
T ss_pred HcCCeeeccCCccchHhHhhCC-cEEEEEEEEEECCchhhCCchHHHHHHHHHhcCCceEEEEEecCCCHHHHHHHHHhc
Confidence 3347788899999999876655 89999999999999999999999999999765 488999999865 6888888876
Q ss_pred CCCC---ceeecCChHHHHHcCCccccceee
Q 027527 152 KFKG---EVYADPNHSSYEALSFVSGVLVTF 179 (222)
Q Consensus 152 ~~pf---pil~Dpd~~lyk~lGl~~~~~~~~ 179 (222)
..+. |..-|...++-+.|+++.-+....
T Consensus 91 ~~~W~~iPf~d~~~~~l~~ky~v~~iP~l~i 121 (157)
T KOG2501|consen 91 HGDWLAIPFGDDLIQKLSEKYEVKGIPALVI 121 (157)
T ss_pred CCCeEEecCCCHHHHHHHHhcccCcCceeEE
Confidence 6653 555567788889999987765443
No 60
>cd02950 TxlA TRX-like protein A (TxlA) family; TxlA was originally isolated from the cyanobacterium Synechococcus. It is found only in oxygenic photosynthetic organisms. TRX is a small enzyme that participate in redox reactions, via the reversible oxidation of an active site dithiol present in a CXXC motif. Disruption of the txlA gene suggests that the protein is involved in the redox regulation of the structure and function of photosynthetic apparatus. The plant homolog (designated as HCF164) is localized in the chloroplast and is involved in the assembly of the cytochrome b6f complex, which takes a central position in photosynthetic electron transport.
Probab=98.54 E-value=5.1e-08 Score=78.34 Aligned_cols=85 Identities=13% Similarity=0.133 Sum_probs=61.4
Q ss_pred EEecCCCCeEeCCCccCCCeEEEEEEcCCCChhHHHHHHHHHHhHHHHHhCCCEEEEEcCCCHHHHHHHHHHcCC---CC
Q 027527 79 KVYDVNGNAIPISDLWKDRKAVVAFARHFGCVLCRKRADYLAAKKDVMDASGVALVLIGPGSVEQARTFSEQTKF---KG 155 (222)
Q Consensus 79 ~L~D~~G~~v~Lsdl~~~~~vvVvF~R~~~Cp~C~~el~~L~~~~~~l~~~gv~lvaIs~~s~~~i~~f~~~~~~---pf 155 (222)
++.|.+++...+.+....++.+||+|++.||+.|+..++.|.++.+++.+ .+.++.|..+..+ ..++++++++ |.
T Consensus 2 ~~~~~~~~~~~~~~a~~~gk~vvV~F~A~WC~~C~~~~p~l~~l~~~~~~-~~~~v~v~vd~~~-~~~~~~~~~V~~iPt 79 (142)
T cd02950 2 SLEQLAASSTPPEVALSNGKPTLVEFYADWCTVCQEMAPDVAKLKQKYGD-QVNFVMLNVDNPK-WLPEIDRYRVDGIPH 79 (142)
T ss_pred ChHHHhhccCCHHHHHhCCCEEEEEEECCcCHHHHHhHHHHHHHHHHhcc-CeeEEEEEcCCcc-cHHHHHHcCCCCCCE
Confidence 35566677777777666677899999999999999999999999988854 4778888776532 2234444454 44
Q ss_pred ceeecCChHH
Q 027527 156 EVYADPNHSS 165 (222)
Q Consensus 156 pil~Dpd~~l 165 (222)
-++.|+++++
T Consensus 80 ~v~~~~~G~~ 89 (142)
T cd02950 80 FVFLDREGNE 89 (142)
T ss_pred EEEECCCCCE
Confidence 4777876654
No 61
>cd02985 TRX_CDSP32 TRX family, chloroplastic drought-induced stress protein of 32 kD (CDSP32); CDSP32 is composed of two TRX domains, a C-terminal TRX domain which contains a redox active CXXC motif and an N-terminal TRX-like domain which contains an SXXS sequence instead of the redox active motif. CDSP32 is a stress-inducible TRX, i.e., it acts as a TRX by reducing protein disulfides and is induced by environmental and oxidative stress conditions. It plays a critical role in plastid defense against oxidative damage, a role related to its function as a physiological electron donor to BAS1, a plastidic 2-cys peroxiredoxin. Plants lacking CDSP32 exhibit decreased photosystem II photochemical efficiencies and chlorophyll retention compared to WT controls, as well as an increased proportion of BAS1 in its overoxidized monomeric form.
Probab=98.54 E-value=3.3e-07 Score=69.27 Aligned_cols=56 Identities=11% Similarity=0.006 Sum_probs=47.7
Q ss_pred CeEEEEEEcCCCChhHHHHHHHHHHhHHHHHhCCCEEEEEcCCCHHHHHHHHHHcCCC
Q 027527 97 RKAVVAFARHFGCVLCRKRADYLAAKKDVMDASGVALVLIGPGSVEQARTFSEQTKFK 154 (222)
Q Consensus 97 ~~vvVvF~R~~~Cp~C~~el~~L~~~~~~l~~~gv~lvaIs~~s~~~i~~f~~~~~~p 154 (222)
++.+|+.|++.||++|+..++.|.++.+++ .++.++.|..+......++++++++.
T Consensus 15 ~k~vvv~F~a~wC~~C~~~~p~l~~la~~~--~~v~~~~vd~d~~~~~~~l~~~~~V~ 70 (103)
T cd02985 15 GRLVVLEFALKHSGPSVKIYPTMVKLSRTC--NDVVFLLVNGDENDSTMELCRREKII 70 (103)
T ss_pred CCEEEEEEECCCCHhHHHHhHHHHHHHHHC--CCCEEEEEECCCChHHHHHHHHcCCC
Confidence 578999999999999999999999999888 56889999988766666777777765
No 62
>PF00255 GSHPx: Glutathione peroxidase; InterPro: IPR000889 Glutathione peroxidase (GSHPx) (1.11.1.9 from EC) is an enzyme that catalyses the reduction of hydroxyperoxides by glutathione [, ]. Its main function is to protect against the damaging effect of endogenously formed hydroxyperoxides. In higher vertebrates, several forms of GSHPx are known, including a ubiquitous cytosolic form (GSHPx-1), a gastrointestinal cytosolic form (GSHPx-GI), a plasma secreted form (GSHPx-P), and an epididymal secretory form (GSHPx-EP). In addition to these characterised forms, the sequence of a protein of unknown function [] has been shown to be evolutionary related to those of GSHPx's. In filarial nematode parasites, the major soluble cuticular protein (gp29) is a secreted GSHPx, which may provide a mechanism of resistance to the immune reaction of the mammalian host by neutralising the products of the oxidative burst of leukocytes []. The Escherichia coli protein btuE, a periplasmic protein involved in vitamin B12 transport, is evolutionarily related to GSHPxs, although the significance of this relationship is unclear. The structure of bovine seleno-glutathione peroxidase has been determined []. The protein belongs to the alpha-beta class, with a 3 layer(aba) sandwich architecture. The catalyic site of GSHPx contains a conserved residue which is either a cysteine or, in many eukaryotic GSHPx, a selenocysteine []. ; GO: 0004602 glutathione peroxidase activity, 0006979 response to oxidative stress, 0055114 oxidation-reduction process; PDB: 3E0U_A 2VUP_A 2RM5_A 2RM6_A 3DWV_B 2P31_B 2R37_B 1GP1_B 2F8A_B 3KIJ_C ....
Probab=98.51 E-value=6e-07 Score=69.52 Aligned_cols=80 Identities=14% Similarity=0.250 Sum_probs=66.6
Q ss_pred CcEEecCCCCeEeCCCccCCCeEEEEEEcCCCChhHHHHHHHHHHhHHHHHhCCCEEEEEcCC--------CHHHHHHHH
Q 027527 77 TVKVYDVNGNAIPISDLWKDRKAVVAFARHFGCVLCRKRADYLAAKKDVMDASGVALVLIGPG--------SVEQARTFS 148 (222)
Q Consensus 77 df~L~D~~G~~v~Lsdl~~~~~vvVvF~R~~~Cp~C~~el~~L~~~~~~l~~~gv~lvaIs~~--------s~~~i~~f~ 148 (222)
||++.|.+|+.++|+++ +++. +||.--++.|.... +...|+++++++.+.|..|+++-+. +.+++++|+
T Consensus 3 df~~~~~~G~~v~l~~y-~Gkv-~LIVNvAs~Cg~t~-qy~~L~~L~~ky~~~gl~ILaFPcnqFg~QEp~~~~ei~~~~ 79 (108)
T PF00255_consen 3 DFSAKDIDGKPVSLSKY-KGKV-LLIVNVASKCGYTK-QYKQLNELYEKYKDKGLEILAFPCNQFGNQEPGSNEEIKEFC 79 (108)
T ss_dssp GSEEEBTTSSEEEGGGG-TTSE-EEEEEEESSSTTHH-HHHHHHHHHHHHGGGTEEEEEEEBSTTTTTTSSCHHHHHHHH
T ss_pred ceeeeCCCCCEECHHHc-CCCE-EEEEecccccCCcc-ccHHHHHHHHHHhcCCeEEEeeehHHhccccCCCHHHHHHHH
Confidence 68999999999999996 4554 44444589999999 8999999999999999999998543 558999999
Q ss_pred HH-cCCCCceee
Q 027527 149 EQ-TKFKGEVYA 159 (222)
Q Consensus 149 ~~-~~~pfpil~ 159 (222)
.. .+..|||+.
T Consensus 80 ~~~~~~~F~vf~ 91 (108)
T PF00255_consen 80 KEKFGVTFPVFE 91 (108)
T ss_dssp CHCHT-SSEEBS
T ss_pred HhccCCcccceE
Confidence 88 678888875
No 63
>COG0678 AHP1 Peroxiredoxin [Posttranslational modification, protein turnover, chaperones]
Probab=98.41 E-value=6.2e-07 Score=73.03 Aligned_cols=108 Identities=15% Similarity=0.104 Sum_probs=93.9
Q ss_pred ccccCcCCCcEEecC------CC-CeEeCCCccCCCeEEEEEEcCCCChhHHH-HHHHHHHhHHHHHhCCCE-EEEEcCC
Q 027527 69 EDTKNLLDTVKVYDV------NG-NAIPISDLWKDRKAVVAFARHFGCVLCRK-RADYLAAKKDVMDASGVA-LVLIGPG 139 (222)
Q Consensus 69 ~~~g~~apdf~L~D~------~G-~~v~Lsdl~~~~~vvVvF~R~~~Cp~C~~-el~~L~~~~~~l~~~gv~-lvaIs~~ 139 (222)
..+|+++|..++... +| +.++-.++.++++++|+-+++.+.|-|-. |++.+.+++++|+++||. |+.|+..
T Consensus 3 ~~vg~klP~vtf~tr~~~~~~~~~~~~ts~~lf~gKkVvlf~lPGAFTPTCS~~hlPgY~~~~d~f~~kGVD~I~cVSVN 82 (165)
T COG0678 3 IMVGKKLPAVTFKTRVGDETADGWVDVTTDDLFKGKKVVLFSLPGAFTPTCSSSHLPGYLELADEFKAKGVDEIYCVSVN 82 (165)
T ss_pred cccCCcCCceEeEEeeccccCCCcccccHHHhcCCCEEEEEeCCCccCCCcccccCccHHHHHHHHHHcCCceEEEEEeC
Confidence 568999999988754 22 46778888889999999999999999998 999999999999999998 7788999
Q ss_pred CHHHHHHHHHHcCCC--CceeecCChHHHHHcCCccccc
Q 027527 140 SVEQARTFSEQTKFK--GEVYADPNHSSYEALSFVSGVL 176 (222)
Q Consensus 140 s~~~i~~f~~~~~~p--fpil~Dpd~~lyk~lGl~~~~~ 176 (222)
++-...+|.+..+.. ..++.|.+.++-+++|+.-...
T Consensus 83 D~FVm~AWak~~g~~~~I~fi~Dg~geFTk~~Gm~~d~~ 121 (165)
T COG0678 83 DAFVMNAWAKSQGGEGNIKFIPDGNGEFTKAMGMLVDKS 121 (165)
T ss_pred cHHHHHHHHHhcCCCccEEEecCCCchhhhhcCceeecc
Confidence 999999999999988 4589999999999999965543
No 64
>COG0386 BtuE Glutathione peroxidase [Posttranslational modification, protein turnover, chaperones]
Probab=98.34 E-value=1.6e-06 Score=70.87 Aligned_cols=94 Identities=17% Similarity=0.243 Sum_probs=76.7
Q ss_pred cCCCcEEecCCCCeEeCCCccCCCeEEEEEEcCCCChhHHHHHHHHHHhHHHHHhCCCEEEEEcCC--------CHHHHH
Q 027527 74 LLDTVKVYDVNGNAIPISDLWKDRKAVVAFARHFGCVLCRKRADYLAAKKDVMDASGVALVLIGPG--------SVEQAR 145 (222)
Q Consensus 74 ~apdf~L~D~~G~~v~Lsdl~~~~~vvVvF~R~~~Cp~C~~el~~L~~~~~~l~~~gv~lvaIs~~--------s~~~i~ 145 (222)
.+-||++.|.+|+.++|+++ .+++|+|.--++-|.+.- +-..|+.+|++++++|..|+++-+. +.++++
T Consensus 4 ~~yd~~~~~~~G~~~~l~~~--~GkVlLIVNtASkCGfTp-QYegLe~Ly~ky~~~Gf~VLgFPcNQF~~QEPg~~eEI~ 80 (162)
T COG0386 4 SIYDFSVKDIDGEPVSLSDY--KGKVLLIVNTASKCGFTP-QYEGLEALYKKYKDKGFEVLGFPCNQFGGQEPGSDEEIA 80 (162)
T ss_pred ccccceeeccCCCCccHHHh--CCcEEEEEEcccccCCcH-hHHHHHHHHHHHhhCCcEEEeccccccccCCCCCHHHHH
Confidence 45689999999999999996 456777777899999988 6789999999999999999999653 678999
Q ss_pred HHHH-HcCCCCceee------cCChHHHHHcC
Q 027527 146 TFSE-QTKFKGEVYA------DPNHSSYEALS 170 (222)
Q Consensus 146 ~f~~-~~~~pfpil~------Dpd~~lyk~lG 170 (222)
+||+ .++.+||++. +...-+|+-|-
T Consensus 81 ~fC~~~YgVtFp~f~Ki~VnG~~a~PLy~~L~ 112 (162)
T COG0386 81 KFCQLNYGVTFPMFSKIDVNGKNAHPLYKYLK 112 (162)
T ss_pred HHHHhccCceeeeeeEEeecCCCCCcHHHHHH
Confidence 9995 4568899876 23355666554
No 65
>cd02948 TRX_NDPK TRX domain, TRX and NDP-kinase (NDPK) fusion protein family; most members of this group are fusion proteins which contain one redox active TRX domain containing a CXXC motif and three NDPK domains, and are characterized as intermediate chains (ICs) of axonemal outer arm dynein. Dyneins are molecular motors that generate force against microtubules to produce cellular movement, and are divided into two classes: axonemal and cytoplasmic. They are supramolecular complexes consisting of three protein groups classified according to size: dynein heavy, intermediate and light chains. Axonemal dyneins form two structures, the inner and outer arms, which are attached to doublet microtubules throughout the cilia and flagella. The human homolog is the sperm-specific Sptrx-2, presumed to be a component of the human sperm axoneme architecture. Included in this group is another human protein, TRX-like protein 2, a smaller fusion protein containing one TRX and one NDPK domain, which
Probab=98.32 E-value=3.7e-07 Score=68.81 Aligned_cols=53 Identities=8% Similarity=0.173 Sum_probs=43.6
Q ss_pred CCCeEEEEEEcCCCChhHHHHHHHHHHhHHHHHhCCCEEEEEcCCCHHHHHHH
Q 027527 95 KDRKAVVAFARHFGCVLCRKRADYLAAKKDVMDASGVALVLIGPGSVEQARTF 147 (222)
Q Consensus 95 ~~~~vvVvF~R~~~Cp~C~~el~~L~~~~~~l~~~gv~lvaIs~~s~~~i~~f 147 (222)
+.++.+|+.|++.||++|+..++.|.++++++.+..+.++.|..++.+.+++|
T Consensus 15 ~~~~~vvv~F~a~wC~~Ck~~~p~l~~~~~~~~~~~~~~~~vd~d~~~~~~~~ 67 (102)
T cd02948 15 SNKGLTVVDVYQEWCGPCKAVVSLFKKIKNELGDDLLHFATAEADTIDTLKRY 67 (102)
T ss_pred ccCCeEEEEEECCcCHhHHHHhHHHHHHHHHcCCCcEEEEEEeCCCHHHHHHc
Confidence 34567889999999999999999999999988766678888888866555555
No 66
>PF05988 DUF899: Bacterial protein of unknown function (DUF899); InterPro: IPR010296 This family consists of uncharacterised bacterial proteins of unknown function which are thioredoxin-like.
Probab=98.30 E-value=3.1e-06 Score=72.49 Aligned_cols=98 Identities=13% Similarity=0.248 Sum_probs=82.8
Q ss_pred CcCCCcEEecCCCCeEeCCCccCCCeEEEE-EEc-----CCCChhHHHHHHHHHHhHHHHHhCCCEEEEEcCCCHHHHHH
Q 027527 73 NLLDTVKVYDVNGNAIPISDLWKDRKAVVA-FAR-----HFGCVLCRKRADYLAAKKDVMDASGVALVLIGPGSVEQART 146 (222)
Q Consensus 73 ~~apdf~L~D~~G~~v~Lsdl~~~~~vvVv-F~R-----~~~Cp~C~~el~~L~~~~~~l~~~gv~lvaIs~~s~~~i~~ 146 (222)
..-.++.+...+|+ ++|.||++++.-+|| .|- ..+||.|.-.+..+......|.++++.+++|+....+++..
T Consensus 44 ~v~~~Y~F~g~~G~-v~L~dLF~Gr~qLivyhfM~~p~~~~~C~gCs~~~D~~~g~l~hL~~rd~tfa~vSraP~~~i~a 122 (211)
T PF05988_consen 44 EVDKDYVFDGPDGP-VSLADLFEGRRQLIVYHFMFGPDWDEGCPGCSFWADHIDGALRHLHARDTTFAVVSRAPLEKIEA 122 (211)
T ss_pred cCCCCeEEeCCCCc-ccHHHHcCCCceEEEEeeccCCCCCCCCCchhhhHhhhhhhHHHHHhCCceEEEEeCCCHHHHHH
Confidence 33345777677777 999999988754333 332 56999999999999988999999999999999999999999
Q ss_pred HHHHcCCCCceeecCChHHHHHcCC
Q 027527 147 FSEQTKFKGEVYADPNHSSYEALSF 171 (222)
Q Consensus 147 f~~~~~~pfpil~Dpd~~lyk~lGl 171 (222)
|+++.||.||.|+.-+..+-..|++
T Consensus 123 fk~rmGW~~pw~Ss~gs~Fn~D~~~ 147 (211)
T PF05988_consen 123 FKRRMGWTFPWYSSYGSDFNYDFGV 147 (211)
T ss_pred HHHhcCCCceEEEcCCCcccccccc
Confidence 9999999999999988887777776
No 67
>TIGR02740 TraF-like TraF-like protein. This protein is related to the F-type conjugation system pilus assembly proteins TraF (TIGR02739)and TrbB (TIGR02738) both of which exhibit a thioredoxin fold. The protein represented by this model has the same length and architecture as TraF, but lacks the CXXC-motif found in TrbB and believed to be responsible for the disulfide isomerase activity of that protein.
Probab=98.22 E-value=8.1e-07 Score=78.89 Aligned_cols=80 Identities=18% Similarity=0.186 Sum_probs=59.0
Q ss_pred CCeEeCCCccCCCeEEEEEEcCCCChhHHHHHHHHHHhHHHHHhCCCEEEEEcCCCHHHHHHHHHHcCCCCceeecCChH
Q 027527 85 GNAIPISDLWKDRKAVVAFARHFGCVLCRKRADYLAAKKDVMDASGVALVLIGPGSVEQARTFSEQTKFKGEVYADPNHS 164 (222)
Q Consensus 85 G~~v~Lsdl~~~~~vvVvF~R~~~Cp~C~~el~~L~~~~~~l~~~gv~lvaIs~~s~~~i~~f~~~~~~pfpil~Dpd~~ 164 (222)
.+...++++ .++.+|++|++.||++|+.+++.|+++.+++ |+.|++|+.|.... -.|+.+ +.+..
T Consensus 156 ~~~~~l~~l--~~k~~Lv~F~AswCp~C~~~~P~L~~la~~y---g~~Vi~VsvD~~~~---------~~fp~~-~~d~~ 220 (271)
T TIGR02740 156 QKDRVMKDL--AKKSGLFFFFKSDCPYCHQQAPILQAFEDRY---GIEVLPVSVDGGPL---------PGFPNA-RPDAG 220 (271)
T ss_pred HHHHHHHHh--cCCeEEEEEECCCCccHHHHhHHHHHHHHHc---CcEEEEEeCCCCcc---------ccCCcc-cCCHH
Confidence 445677776 2456888889999999999999999998875 68999999875321 015554 55667
Q ss_pred HHHHcCCccccceee
Q 027527 165 SYEALSFVSGVLVTF 179 (222)
Q Consensus 165 lyk~lGl~~~~~~~~ 179 (222)
+.+.||+...+...+
T Consensus 221 la~~~gV~~vPtl~L 235 (271)
T TIGR02740 221 QAQQLKIRTVPAVFL 235 (271)
T ss_pred HHHHcCCCcCCeEEE
Confidence 788888877665544
No 68
>cd02999 PDI_a_ERp44_like PDIa family, endoplasmic reticulum protein 44 (ERp44)-like subfamily; composed of uncharacterized PDI-like eukaryotic proteins containing only one redox active TRX (a) domain with a CXXS motif, similar to ERp44. CXXS is still a redox active motif; however, the mixed disulfide formed with the substrate is more stable than those formed by CXXC motif proteins. PDI-related proteins are usually involved in the oxidative protein folding in the ER by acting as catalysts and folding assistants. ERp44 is involved in thiol-mediated retention in the ER.
Probab=98.14 E-value=4.3e-06 Score=63.09 Aligned_cols=42 Identities=7% Similarity=0.017 Sum_probs=35.8
Q ss_pred CCeEEEEEEcCCCChhHHHHHHHHHHhHHHHHhCCCEEEEEcCC
Q 027527 96 DRKAVVAFARHFGCVLCRKRADYLAAKKDVMDASGVALVLIGPG 139 (222)
Q Consensus 96 ~~~vvVvF~R~~~Cp~C~~el~~L~~~~~~l~~~gv~lvaIs~~ 139 (222)
.++++||.|++.||++|+..++.|.++.+++. ++.++.|..+
T Consensus 17 ~g~~vlV~F~a~WC~~C~~~~p~l~~la~~~~--~~~~~~vd~~ 58 (100)
T cd02999 17 REDYTAVLFYASWCPFSASFRPHFNALSSMFP--QIRHLAIEES 58 (100)
T ss_pred CCCEEEEEEECCCCHHHHhHhHHHHHHHHHhc--cCceEEEECC
Confidence 34678999999999999999999999998885 5778888665
No 69
>cd02963 TRX_DnaJ TRX domain, DnaJ domain containing protein family; composed of uncharacterized proteins of about 500-800 amino acids, containing an N-terminal DnaJ domain followed by one redox active TRX domain. DnaJ is a member of the 40 kDa heat-shock protein (Hsp40) family of molecular chaperones, which regulate the activity of Hsp70s. TRX is involved in the redox regulation of many protein substrates through the reduction of disulfide bonds. TRX has been implicated to catalyse the reduction of Hsp33, a chaperone holdase that binds to unfolded protein intermediates. The presence of DnaJ and TRX domains in members of this family suggests that they could be involved in a redox-regulated chaperone network.
Probab=98.01 E-value=1.1e-05 Score=61.82 Aligned_cols=46 Identities=13% Similarity=0.160 Sum_probs=40.4
Q ss_pred CCeEEEEEEcCCCChhHHHHHHHHHHhHHHHHhCCCEEEEEcCCCH
Q 027527 96 DRKAVVAFARHFGCVLCRKRADYLAAKKDVMDASGVALVLIGPGSV 141 (222)
Q Consensus 96 ~~~vvVvF~R~~~Cp~C~~el~~L~~~~~~l~~~gv~lvaIs~~s~ 141 (222)
.++++||+|++.||+.|+...+.+.++.++++..++.+..|.++..
T Consensus 23 ~~~~vlV~F~a~wC~~C~~~~p~~~~l~~~~~~~~v~~~~vd~d~~ 68 (111)
T cd02963 23 FKKPYLIKITSDWCFSCIHIEPVWKEVIQELEPLGVGIATVNAGHE 68 (111)
T ss_pred CCCeEEEEEECCccHhHHHhhHHHHHHHHHHHhcCceEEEEecccc
Confidence 3568899999999999999999999999999877888898888754
No 70
>cd02993 PDI_a_APS_reductase PDIa family, 5'-Adenylylsulfate (APS) reductase subfamily; composed of plant-type APS reductases containing a C-terminal redox active TRX domain and an N-terminal reductase domain which is part of a superfamily that includes N type ATP PPases. APS reductase catalyzes the reduction of activated sulfate to sulfite, a key step in the biosynthesis of sulfur-containing metabolites. Sulfate is first activated by ATP sulfurylase, forming APS, which can be phosphorylated to 3'-phosphoadenosine-5'-phosphosulfate (PAPS). Depending on the organism, either APS or PAPS can be used for sulfate reduction. Prokaryotes and fungi use PAPS, whereas plants use both APS and PAPS. Since plant-type APS reductase uses glutathione (GSH) as its electron donor, the C-terminal domain may function like glutaredoxin, a GSH-dependent member of the TRX superfamily. The flow of reducing equivalents goes from GSH - C-terminal TRX domain - N-terminal reductase domain - APS. Plant-type APS red
Probab=97.98 E-value=1.9e-05 Score=60.05 Aligned_cols=44 Identities=9% Similarity=0.175 Sum_probs=38.9
Q ss_pred CeEEEEEEcCCCChhHHHHHHHHHHhHHHHHhCCCEEEEEcCCC
Q 027527 97 RKAVVAFARHFGCVLCRKRADYLAAKKDVMDASGVALVLIGPGS 140 (222)
Q Consensus 97 ~~vvVvF~R~~~Cp~C~~el~~L~~~~~~l~~~gv~lvaIs~~s 140 (222)
++.++++|++.||++|++..+.+.++..++++.++.+..|..+.
T Consensus 21 ~k~vlv~f~a~wC~~C~~~~~~~~~la~~~~~~~~~~~~vd~d~ 64 (109)
T cd02993 21 NQSTLVVLYAPWCPFCQAMEASYEELAEKLAGSNVKVAKFNADG 64 (109)
T ss_pred CCCEEEEEECCCCHHHHHHhHHHHHHHHHhccCCeEEEEEECCc
Confidence 46788889999999999999999999999987778899988875
No 71
>COG1999 Uncharacterized protein SCO1/SenC/PrrC, involved in biogenesis of respiratory and photosynthetic systems [General function prediction only]
Probab=97.98 E-value=4.7e-05 Score=65.13 Aligned_cols=94 Identities=18% Similarity=0.261 Sum_probs=71.9
Q ss_pred CcEEecCCCCeEeCCCccCCCeEEEEEEcCCCCh-hHHHHHHHHHHhHHHHH---hCCCEEEEEcCC----CHHHHHHHH
Q 027527 77 TVKVYDVNGNAIPISDLWKDRKAVVAFARHFGCV-LCRKRADYLAAKKDVMD---ASGVALVLIGPG----SVEQARTFS 148 (222)
Q Consensus 77 df~L~D~~G~~v~Lsdl~~~~~vvVvF~R~~~Cp-~C~~el~~L~~~~~~l~---~~gv~lvaIs~~----s~~~i~~f~ 148 (222)
+|+|.|.+|+.+.+.++ +++..|+||-.+.|| .|--.+..|.+..+++. ...++++.|+.| +++.+++|.
T Consensus 49 ~f~l~d~~G~~~~~~~l--~Gk~~lv~FgyT~CpdVCP~~l~~l~~~~~~l~~~~~~~v~vv~itvDPerDtp~~lk~Y~ 126 (207)
T COG1999 49 DFELTDQDGKPFTLKDL--KGKPSLVFFGYTHCPDVCPTTLAELKALLKKLGEGEGDDVQVVFITVDPERDTPEVLKKYA 126 (207)
T ss_pred ceeeecCCCCEeecccc--CCCEEEEEeecCCCCccChHHHHHHHHHHHHhccccCCCEEEEEEEECCCCCCHHHHHHHh
Confidence 79999999999999998 445677777888998 79999999999998887 455778888776 568888898
Q ss_pred HHcCCC--Cceee---cCChHHHHHcCCcc
Q 027527 149 EQTKFK--GEVYA---DPNHSSYEALSFVS 173 (222)
Q Consensus 149 ~~~~~p--fpil~---Dpd~~lyk~lGl~~ 173 (222)
+ .++. +.-+. +.-.++.++|++..
T Consensus 127 ~-~~~~~~~~~ltg~~~~~~~~~k~~~V~~ 155 (207)
T COG1999 127 E-LNFDPRWIGLTGTPEQIEEVAKAYGVFY 155 (207)
T ss_pred c-ccCCCCeeeeeCCHHHHHHHHHHhccee
Confidence 8 3332 33333 34466778888764
No 72
>cd02956 ybbN ybbN protein family; ybbN is a hypothetical protein containing a redox-inactive TRX-like domain. Its gene has been sequenced from several gammaproteobacteria and actinobacteria.
Probab=97.97 E-value=1.6e-05 Score=58.42 Aligned_cols=63 Identities=8% Similarity=-0.100 Sum_probs=43.8
Q ss_pred CeEEEEEEcCCCChhHHHHHHHHHHhHHHHHhCCCEEEEEcCCCHHHHHHHHHHcCCCCceeec
Q 027527 97 RKAVVAFARHFGCVLCRKRADYLAAKKDVMDASGVALVLIGPGSVEQARTFSEQTKFKGEVYAD 160 (222)
Q Consensus 97 ~~vvVvF~R~~~Cp~C~~el~~L~~~~~~l~~~gv~lvaIs~~s~~~i~~f~~~~~~pfpil~D 160 (222)
++.+|++|++.||+.|+...+.+.++.+++.. .+.++.|..+....+.+-..-.++|--++.+
T Consensus 12 ~~~vlv~f~a~wC~~C~~~~~~~~~~~~~~~~-~~~~~~vd~~~~~~l~~~~~i~~~Pt~~~~~ 74 (96)
T cd02956 12 QVPVVVDFWAPRSPPSKELLPLLERLAEEYQG-QFVLAKVNCDAQPQIAQQFGVQALPTVYLFA 74 (96)
T ss_pred CCeEEEEEECCCChHHHHHHHHHHHHHHHhCC-cEEEEEEeccCCHHHHHHcCCCCCCEEEEEe
Confidence 46889999999999999999999999988854 4777888777543332211222344335555
No 73
>cd02951 SoxW SoxW family; SoxW is a bacterial periplasmic TRX, containing a redox active CXXC motif, encoded by a genetic locus (sox operon) involved in thiosulfate oxidation. Sulfur bacteria oxidize sulfur compounds to provide reducing equivalents for carbon dioxide fixation during autotrophic growth and the respiratory electron transport chain. It is unclear what the role of SoxW is, since it has been found to be dispensable in the oxidation of thiosulfate to sulfate. SoxW is specifically kept in the reduced state by SoxV, which is essential in thiosulfate oxidation.
Probab=97.94 E-value=1e-05 Score=62.67 Aligned_cols=46 Identities=20% Similarity=0.273 Sum_probs=34.3
Q ss_pred CCC-eEEEEEEcCCCChhHHHHHHHHH---HhHHHHHhCCCEEEEEcCCCH
Q 027527 95 KDR-KAVVAFARHFGCVLCRKRADYLA---AKKDVMDASGVALVLIGPGSV 141 (222)
Q Consensus 95 ~~~-~vvVvF~R~~~Cp~C~~el~~L~---~~~~~l~~~gv~lvaIs~~s~ 141 (222)
+.+ +.++|+|++.||++|++..+.+. ++.+.++ .++.++.|..++.
T Consensus 11 ~~~~k~vlv~f~a~wC~~C~~~~~~~~~~~~~~~~~~-~~~~~~~i~~d~~ 60 (125)
T cd02951 11 ADGKKPLLLLFSQPGCPYCDKLKRDYLNDPAVQAYIR-AHFVVVYINIDGD 60 (125)
T ss_pred HcCCCcEEEEEeCCCCHHHHHHHHHhcCcHHHHHHHH-hheEEEEEEccCC
Confidence 345 67888999999999999998875 3444454 4677888877643
No 74
>cd02954 DIM1 Dim1 family; Dim1 is also referred to as U5 small nuclear ribonucleoprotein particle (snRNP)-specific 15kD protein. It is a component of U5 snRNP, which pre-assembles with U4/U6 snRNPs to form a [U4/U6:U5] tri-snRNP complex required for pre-mRNA splicing. Dim1 interacts with multiple splicing-associated proteins, suggesting that it functions at multiple control points in the splicing of pre-mRNA as part of a large spliceosomal complex involving many protein-protein interactions. U5 snRNP contains seven core proteins (common to all snRNPs) and nine U5-specific proteins, one of which is Dim1. Dim1 adopts a thioredoxin fold but does not contain the redox active CXXC motif. It is essential for G2/M phase transition, as a consequence to its role in pre-mRNA splicing.
Probab=97.90 E-value=4e-05 Score=59.89 Aligned_cols=84 Identities=13% Similarity=0.014 Sum_probs=56.0
Q ss_pred CeEEEEEEcCCCChhHHHHHHHHHHhHHHHHhCCCEEEEEcCCCHHHHHHHHHHcCCCCceeecCChHHHHHcCCccccc
Q 027527 97 RKAVVAFARHFGCVLCRKRADYLAAKKDVMDASGVALVLIGPGSVEQARTFSEQTKFKGEVYADPNHSSYEALSFVSGVL 176 (222)
Q Consensus 97 ~~vvVvF~R~~~Cp~C~~el~~L~~~~~~l~~~gv~lvaIs~~s~~~i~~f~~~~~~pfpil~Dpd~~lyk~lGl~~~~~ 176 (222)
.+.+|+.|++.||++|+.-.+.|.++.+++... +.++-|..|....+.+-..-.++|-=++.-....+.+..|....-.
T Consensus 14 ~~~vVV~F~A~WCgpCk~m~P~le~la~~~~~~-v~f~kVDvD~~~~la~~~~V~~iPTf~~fk~G~~v~~~~G~~~~~~ 92 (114)
T cd02954 14 EKVVVIRFGRDWDPVCMQMDEVLAKIAEDVSNF-AVIYLVDIDEVPDFNKMYELYDPPTVMFFFRNKHMKIDLGTGNNNK 92 (114)
T ss_pred CCEEEEEEECCCChhHHHHHHHHHHHHHHccCc-eEEEEEECCCCHHHHHHcCCCCCCEEEEEECCEEEEEEcCCCCCce
Confidence 467899999999999999999999998887432 6778888886544433323334553344445556666667655544
Q ss_pred eeecc
Q 027527 177 VTFTP 181 (222)
Q Consensus 177 ~~~~P 181 (222)
....+
T Consensus 93 ~~~~~ 97 (114)
T cd02954 93 INWVF 97 (114)
T ss_pred EEEec
Confidence 44443
No 75
>KOG1651 consensus Glutathione peroxidase [Posttranslational modification, protein turnover, chaperones]
Probab=97.87 E-value=3.5e-05 Score=63.77 Aligned_cols=99 Identities=17% Similarity=0.205 Sum_probs=78.8
Q ss_pred cCcCCCcEEecCCCCeEeCCCccCCCeEEEEEEcCCCChhHHHHHHHHHHhHHHHHhCCCEEEEEcCC--------CHHH
Q 027527 72 KNLLDTVKVYDVNGNAIPISDLWKDRKAVVAFARHFGCVLCRKRADYLAAKKDVMDASGVALVLIGPG--------SVEQ 143 (222)
Q Consensus 72 g~~apdf~L~D~~G~~v~Lsdl~~~~~vvVvF~R~~~Cp~C~~el~~L~~~~~~l~~~gv~lvaIs~~--------s~~~ 143 (222)
-..+=||++.|.+|+.++|+.+ .++++++.--++.|.+....-.+|+++++++++.|.+|++.-|. +.++
T Consensus 11 ~~siydf~~~d~~G~~v~l~~y--rGkV~LiVNVAS~Cg~T~~~Y~~l~~L~~ky~~~Gl~ILaFPCNQFg~QEp~~n~E 88 (171)
T KOG1651|consen 11 KGSIYDFSAKDLDGEYVSLSQY--RGKVVLIVNVASQCGLTESQYTELNELYEKYKDQGLEILAFPCNQFGNQEPGSNEE 88 (171)
T ss_pred hcceeeeEEecCCCCCccHHHh--CCeEEEEEEcccccccchhcchhHHHHHHHHhhCCeEEEEeccccccCcCCCCcHH
Confidence 3456789999999999999997 45677777779999999977779999999999999999999663 4478
Q ss_pred HHHHH-HHcCCCCceee------cCChHHHHHcCCc
Q 027527 144 ARTFS-EQTKFKGEVYA------DPNHSSYEALSFV 172 (222)
Q Consensus 144 i~~f~-~~~~~pfpil~------Dpd~~lyk~lGl~ 172 (222)
+..|+ .+++..|+|+. |....+|+-|.-.
T Consensus 89 i~~f~~~r~~~~f~if~KidVNG~~~~PlykfLK~~ 124 (171)
T KOG1651|consen 89 ILNFVKVRYGAEFPIFQKIDVNGDNADPLYKFLKKV 124 (171)
T ss_pred HHHHHHhccCCCCccEeEEecCCCCCchHHHHHhhc
Confidence 88888 56677788775 3455666655443
No 76
>cd02953 DsbDgamma DsbD gamma family; DsbD gamma is the C-terminal periplasmic domain of the bacterial protein DsbD. It contains a CXXC motif in a TRX fold and shuttles the reducing potential from the membrane domain (DsbD beta) to the N-terminal periplasmic domain (DsbD alpha). DsbD beta, a transmembrane domain comprising of eight helices, acquires its reducing potential from the cytoplasmic thioredoxin. DsbD alpha transfers the acquired reducing potential from DsbD gamma to target proteins such as the periplasmic protein disulphide isomerases, DsbC and DsbG. This flow of reducing potential from the cytoplasm through DsbD allows DsbC and DsbG to act as isomerases in the oxidizing environment of the bacterial periplasm. DsbD also transfers reducing potential from the cytoplasm to specific reductases in the periplasm which are involved in the maturation of cytochromes.
Probab=97.87 E-value=1.7e-05 Score=59.35 Aligned_cols=69 Identities=12% Similarity=0.134 Sum_probs=48.3
Q ss_pred CCCeEEEEEEcCCCChhHHHHHHHH---HHhHHHHHhCCCEEEEEcCCCH-HHHHHHHHHcCCC-Cc--eeecC-ChH
Q 027527 95 KDRKAVVAFARHFGCVLCRKRADYL---AAKKDVMDASGVALVLIGPGSV-EQARTFSEQTKFK-GE--VYADP-NHS 164 (222)
Q Consensus 95 ~~~~vvVvF~R~~~Cp~C~~el~~L---~~~~~~l~~~gv~lvaIs~~s~-~~i~~f~~~~~~p-fp--il~Dp-d~~ 164 (222)
+.++.+||.|++.||++|+...+.+ .++.+.+.+ ++.++.|..+.. ....++++++++. +| ++.|+ +++
T Consensus 9 ~~~k~vlv~f~a~wC~~C~~~~~~~~~~~~~~~~~~~-~~~~~~vd~~~~~~~~~~~~~~~~i~~~Pti~~~~~~~g~ 85 (104)
T cd02953 9 AQGKPVFVDFTADWCVTCKVNEKVVFSDPEVQAALKK-DVVLLRADWTKNDPEITALLKRFGVFGPPTYLFYGPGGEP 85 (104)
T ss_pred HcCCeEEEEEEcchhHHHHHHHHHhcCCHHHHHHHhC-CeEEEEEecCCCCHHHHHHHHHcCCCCCCEEEEECCCCCC
Confidence 3456788888999999999998776 456666655 788888887643 3356677766654 34 66676 444
No 77
>cd02959 ERp19 Endoplasmic reticulum protein 19 (ERp19) family; ERp19 is also known as ERp18, a protein located in the ER containing one redox active TRX domain. Denaturation studies indicate that the reduced form is more stable than the oxidized form, suggesting that the protein is involved in disulfide bond formation. In vitro, ERp19 has been shown to possess thiol-disulfide oxidase activity which is dependent on the presence of both active site cysteines. Although described as protein disulfide isomerase (PDI)-like, the protein does not complement for PDI activity. ERp19 shows a wide tissue distribution but is most abundant in liver, testis, heart and kidney.
Probab=97.87 E-value=2.7e-05 Score=60.62 Aligned_cols=71 Identities=14% Similarity=0.247 Sum_probs=47.1
Q ss_pred CCeEEEEEEcCCCChhHHHHHHHHHHhHHHHHhCCCEEEEEcCCCH--HHHHHHHHHc-CCCCceeecCChHHHH
Q 027527 96 DRKAVVAFARHFGCVLCRKRADYLAAKKDVMDASGVALVLIGPGSV--EQARTFSEQT-KFKGEVYADPNHSSYE 167 (222)
Q Consensus 96 ~~~vvVvF~R~~~Cp~C~~el~~L~~~~~~l~~~gv~lvaIs~~s~--~~i~~f~~~~-~~pfpil~Dpd~~lyk 167 (222)
.++.|+|+|++.||++|+...+.+.+..+... .+..++.|..+.. ...+.|.... ++|.-++.|+++++.+
T Consensus 18 ~~kpVlV~F~a~WC~~C~~~~~~~~~~~~~~~-~~~~fv~v~vd~~~~~~~~~~~~~g~~vPt~~f~~~~Gk~~~ 91 (117)
T cd02959 18 SGKPLMLLIHKTWCGACKALKPKFAESKEISE-LSHNFVMVNLEDDEEPKDEEFSPDGGYIPRILFLDPSGDVHP 91 (117)
T ss_pred cCCcEEEEEeCCcCHHHHHHHHHHhhhHHHHh-hcCcEEEEEecCCCCchhhhcccCCCccceEEEECCCCCCch
Confidence 34678888889999999999999888655432 3344555544422 2334453332 2777799999887755
No 78
>cd03000 PDI_a_TMX3 PDIa family, TMX3 subfamily; composed of eukaryotic proteins similar to human TMX3, a TRX related transmembrane protein containing one redox active TRX domain at the N-terminus and a classical ER retrieval sequence for type I transmembrane proteins at the C-terminus. The TMX3 transcript is found in a variety of tissues with the highest levels detected in skeletal muscle and the heart. In vitro, TMX3 showed oxidase activity albeit slightly lower than that of protein disulfide isomerase.
Probab=97.86 E-value=4.3e-05 Score=57.35 Aligned_cols=45 Identities=13% Similarity=0.079 Sum_probs=36.5
Q ss_pred CeEEEEEEcCCCChhHHHHHHHHHHhHHHHHhCC--CEEEEEcCCCH
Q 027527 97 RKAVVAFARHFGCVLCRKRADYLAAKKDVMDASG--VALVLIGPGSV 141 (222)
Q Consensus 97 ~~vvVvF~R~~~Cp~C~~el~~L~~~~~~l~~~g--v~lvaIs~~s~ 141 (222)
.+.++++|++.||++|++..+.|.++.++++..+ +.+..+..+..
T Consensus 15 ~~~vlv~f~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~~~~vd~~~~ 61 (104)
T cd03000 15 EDIWLVDFYAPWCGHCKKLEPVWNEVGAELKSSGSPVRVGKLDATAY 61 (104)
T ss_pred CCeEEEEEECCCCHHHHhhChHHHHHHHHHHhcCCcEEEEEEECccC
Confidence 4578999999999999999999999999887654 56666666543
No 79
>PRK10996 thioredoxin 2; Provisional
Probab=97.84 E-value=7e-06 Score=65.56 Aligned_cols=54 Identities=19% Similarity=0.167 Sum_probs=42.2
Q ss_pred eCCCccCCCeEEEEEEcCCCChhHHHHHHHHHHhHHHHHhCCCEEEEEcCCCHHH
Q 027527 89 PISDLWKDRKAVVAFARHFGCVLCRKRADYLAAKKDVMDASGVALVLIGPGSVEQ 143 (222)
Q Consensus 89 ~Lsdl~~~~~vvVvF~R~~~Cp~C~~el~~L~~~~~~l~~~gv~lvaIs~~s~~~ 143 (222)
.+.++.+.++.++++|++.||++|+...+.|.++.+++.+ ++.++.|..++...
T Consensus 44 ~~~~~i~~~k~vvv~F~a~wC~~C~~~~~~l~~l~~~~~~-~v~~~~vd~~~~~~ 97 (139)
T PRK10996 44 TLDKLLQDDLPVVIDFWAPWCGPCRNFAPIFEDVAAERSG-KVRFVKVNTEAERE 97 (139)
T ss_pred HHHHHHhCCCeEEEEEECCCCHHHHHHHHHHHHHHHHhCC-CeEEEEEeCCCCHH
Confidence 4445555567899999999999999999999998887754 58888887775543
No 80
>cd03003 PDI_a_ERdj5_N PDIa family, N-terminal ERdj5 subfamily; ERdj5, also known as JPDI and macrothioredoxin, is a protein containing an N-terminal DnaJ domain and four redox active TRX domains. This subfamily is comprised of the first TRX domain of ERdj5 located after the DnaJ domain at the N-terminal half of the protein. ERdj5 is a ubiquitous protein localized in the endoplasmic reticulum (ER) and is abundant in secretory cells. It's transcription is induced during ER stress. It interacts with BiP through its DnaJ domain in an ATP-dependent manner. BiP, an ER-resident member of the Hsp70 chaperone family, functions in ER-associated degradation and protein translocation.
Probab=97.81 E-value=3.1e-05 Score=57.60 Aligned_cols=56 Identities=11% Similarity=0.076 Sum_probs=43.5
Q ss_pred CCCeEEEEEEcCCCChhHHHHHHHHHHhHHHHHhCCCEEEEEcCCCHHHHHHHHHHcCCC
Q 027527 95 KDRKAVVAFARHFGCVLCRKRADYLAAKKDVMDASGVALVLIGPGSVEQARTFSEQTKFK 154 (222)
Q Consensus 95 ~~~~vvVvF~R~~~Cp~C~~el~~L~~~~~~l~~~gv~lvaIs~~s~~~i~~f~~~~~~p 154 (222)
.+.+.++++|++.||+.|++..+.+.++.++++. .+.+..|.++... ..++++++.
T Consensus 16 ~~~~~~~v~f~a~wC~~C~~~~p~~~~~a~~~~~-~~~~~~vd~~~~~---~~~~~~~v~ 71 (101)
T cd03003 16 NSGEIWFVNFYSPRCSHCHDLAPTWREFAKEMDG-VIRIGAVNCGDDR---MLCRSQGVN 71 (101)
T ss_pred cCCCeEEEEEECCCChHHHHhHHHHHHHHHHhcC-ceEEEEEeCCccH---HHHHHcCCC
Confidence 3457789999999999999999999999998864 4788889888543 345555554
No 81
>cd03006 PDI_a_EFP1_N PDIa family, N-terminal EFP1 subfamily; EFP1 is a binding partner protein of thyroid oxidase (ThOX), also called Duox. ThOX proteins are responsible for the generation of hydrogen peroxide, a crucial substrate of thyroperoxidase, which functions to iodinate thyroglobulin and synthesize thyroid hormones. EFP1 was isolated through a yeast two-hybrid method using the EF-hand fragment of dog Duox1 as a bait. It could be one of the partners in the assembly of a multiprotein complex constituting the thyroid hydrogen peroxide generating system. EFP1 contains two TRX domains related to the redox active TRX domains of protein disulfide isomerase (PDI). This subfamily is composed of the N-terminal TRX domain of EFP1, which contains a CXXS sequence in place of the typical CXXC motif, similar to ERp44. The CXXS motif allows the formation of stable mixed disulfides, crucial for the ER-retention function of ERp44.
Probab=97.80 E-value=9.6e-05 Score=57.39 Aligned_cols=47 Identities=9% Similarity=-0.059 Sum_probs=39.6
Q ss_pred CCCeEEEEEEcCCCChhHHHHHHHHHHhHHHHHhCCCEEEEEcCCCHH
Q 027527 95 KDRKAVVAFARHFGCVLCRKRADYLAAKKDVMDASGVALVLIGPGSVE 142 (222)
Q Consensus 95 ~~~~vvVvF~R~~~Cp~C~~el~~L~~~~~~l~~~gv~lvaIs~~s~~ 142 (222)
++.+.+|+.|++.||++|+...+.+.++.+++++. +.+..|.++...
T Consensus 27 ~~~~~vlV~FyA~WC~~Ck~l~p~~~~la~~~~~~-v~~~~Vd~d~~~ 73 (113)
T cd03006 27 TDAEVSLVMYYAPWDAQSQAARQEFEQVAQKLSDQ-VLFVAINCWWPQ 73 (113)
T ss_pred cCCCEEEEEEECCCCHHHHHHHHHHHHHHHHhcCC-eEEEEEECCCCh
Confidence 45678899999999999999999999999998543 788889887554
No 82
>cd02949 TRX_NTR TRX domain, novel NADPH thioredoxin reductase (NTR) family; composed of fusion proteins found only in oxygenic photosynthetic organisms containing both TRX and NTR domains. The TRX domain functions as a protein disulfide reductase via the reversible oxidation of an active center dithiol present in a CXXC motif, while the NTR domain functions as a reductant to oxidized TRX. The fusion protein is bifunctional, showing both TRX and NTR activities, but it is not an independent NTR/TRX system. In plants, the protein is found exclusively in shoots and mature leaves and is localized in the chloroplast. It is involved in plant protection against oxidative stress.
Probab=97.77 E-value=2.8e-05 Score=57.68 Aligned_cols=65 Identities=14% Similarity=0.138 Sum_probs=45.4
Q ss_pred CCCeEEEEEEcCCCChhHHHHHHHHHHhHHHHHhCCCEEEEEcCCCHHHH-HHHHHHcCCCCceeecC
Q 027527 95 KDRKAVVAFARHFGCVLCRKRADYLAAKKDVMDASGVALVLIGPGSVEQA-RTFSEQTKFKGEVYADP 161 (222)
Q Consensus 95 ~~~~vvVvF~R~~~Cp~C~~el~~L~~~~~~l~~~gv~lvaIs~~s~~~i-~~f~~~~~~pfpil~Dp 161 (222)
++.++++++|++.||+.|+...+.+.++.+++.. ++.++.|..+...++ ++| .-.++|.-++.+.
T Consensus 11 ~~~~~vlv~f~a~~C~~C~~~~~~l~~l~~~~~~-~v~~~~id~d~~~~l~~~~-~v~~vPt~~i~~~ 76 (97)
T cd02949 11 ESDRLILVLYTSPTCGPCRTLKPILNKVIDEFDG-AVHFVEIDIDEDQEIAEAA-GIMGTPTVQFFKD 76 (97)
T ss_pred hCCCeEEEEEECCCChhHHHHHHHHHHHHHHhCC-ceEEEEEECCCCHHHHHHC-CCeeccEEEEEEC
Confidence 4567899999999999999999999998888753 577888887754322 222 2234554444443
No 83
>cd03002 PDI_a_MPD1_like PDI family, MPD1-like subfamily; composed of eukaryotic proteins similar to Saccharomyces cerevisiae MPD1 protein, which contains a single redox active TRX domain located at the N-terminus, and an ER retention signal at the C-terminus indicative of an ER-resident protein. MPD1 has been shown to suppress the maturation defect of carboxypeptidase Y caused by deletion of the yeast PDI1 gene. Other characterized members of this subfamily include the Aspergillus niger prpA protein and Giardia PDI-1. PrpA is non-essential to strain viability, however, its transcript level is induced by heterologous protein expression suggesting a possible role in oxidative protein folding during high protein production. Giardia PDI-1 has the ability to refold scrambled RNase and exhibits transglutaminase activity.
Probab=97.76 E-value=8.2e-05 Score=55.63 Aligned_cols=66 Identities=9% Similarity=0.031 Sum_probs=46.7
Q ss_pred CCeEEEEEEcCCCChhHHHHHHHHHHhHHHHHhCCCEEEEEcCCCHHHHHHHHHHcCCC-Cc--eeecCCh
Q 027527 96 DRKAVVAFARHFGCVLCRKRADYLAAKKDVMDASGVALVLIGPGSVEQARTFSEQTKFK-GE--VYADPNH 163 (222)
Q Consensus 96 ~~~vvVvF~R~~~Cp~C~~el~~L~~~~~~l~~~gv~lvaIs~~s~~~i~~f~~~~~~p-fp--il~Dpd~ 163 (222)
.++.+|+.|++.||+.|++..+.+.++.+++. ..+.++.|.++.. ...++++++++. +| ++.+++.
T Consensus 17 ~~~~~lv~f~a~wC~~C~~~~~~~~~~a~~~~-~~~~~~~v~~~~~-~~~~~~~~~~i~~~Pt~~~~~~~~ 85 (109)
T cd03002 17 TNYTTLVEFYAPWCGHCKNLKPEYAKAAKELD-GLVQVAAVDCDED-KNKPLCGKYGVQGFPTLKVFRPPK 85 (109)
T ss_pred CCCeEEEEEECCCCHHHHhhChHHHHHHHHhc-CCceEEEEecCcc-ccHHHHHHcCCCcCCEEEEEeCCC
Confidence 34568899999999999999999999988875 3578888888752 123344454544 33 4555554
No 84
>cd02998 PDI_a_ERp38 PDIa family, endoplasmic reticulum protein 38 (ERp38) subfamily; composed of proteins similar to the P5-like protein first isolated from alfalfa, which contains two redox active TRX (a) domains at the N-terminus, like human P5, and a C-terminal domain with homology to the C-terminal domain of ERp29, unlike human P5. The cDNA clone of this protein (named G1) was isolated from an alfalfa cDNA library by screening with human protein disulfide isomerase (PDI) cDNA. The G1 protein is constitutively expressed in all major organs of the plant and its expression is induced by treatment with tunicamycin, indicating that it may be a glucose-regulated protein. The G1 homolog in the eukaryotic social amoeba Dictyostelium discoideum is also described as a P5-like protein, which is located in the endoplasmic reticulum (ER) despite the absence of an ER-retrieval signal. G1 homologs from Aspergillus niger and Neurospora crassa have also been characterized, and are named TIGA and ER
Probab=97.76 E-value=4.5e-05 Score=56.16 Aligned_cols=64 Identities=13% Similarity=0.161 Sum_probs=44.8
Q ss_pred CeEEEEEEcCCCChhHHHHHHHHHHhHHHHH-hCCCEEEEEcCCCHHHHHHHHHHcC---CCCceeecCC
Q 027527 97 RKAVVAFARHFGCVLCRKRADYLAAKKDVMD-ASGVALVLIGPGSVEQARTFSEQTK---FKGEVYADPN 162 (222)
Q Consensus 97 ~~vvVvF~R~~~Cp~C~~el~~L~~~~~~l~-~~gv~lvaIs~~s~~~i~~f~~~~~---~pfpil~Dpd 162 (222)
++.+|+.|++.||+.|++..+.+.++..+++ ..++.++.|..+.. ...++++++ +|.-++.++.
T Consensus 18 ~~~~~v~f~a~~C~~C~~~~~~~~~~~~~~~~~~~~~~~~id~~~~--~~~~~~~~~i~~~P~~~~~~~~ 85 (105)
T cd02998 18 KKDVLVEFYAPWCGHCKNLAPEYEKLAAVFANEDDVVIAKVDADEA--NKDLAKKYGVSGFPTLKFFPKG 85 (105)
T ss_pred CCcEEEEEECCCCHHHHhhChHHHHHHHHhCCCCCEEEEEEECCCc--chhhHHhCCCCCcCEEEEEeCC
Confidence 4578888999999999999999999998886 34577778877662 223333334 4433455554
No 85
>cd03005 PDI_a_ERp46 PDIa family, endoplasmic reticulum protein 46 (ERp46) subfamily; ERp46 is an ER-resident protein containing three redox active TRX domains. Yeast complementation studies show that ERp46 can substitute for protein disulfide isomerase (PDI) function in vivo. It has been detected in many tissues, however, transcript and protein levels do not correlate in all tissues, suggesting regulation at a posttranscriptional level. An identical protein, named endoPDI, has been identified as an endothelial PDI that is highly expressed in the endothelium of tumors and hypoxic lesions. It has a protective effect on cells exposed to hypoxia.
Probab=97.76 E-value=4.4e-05 Score=56.24 Aligned_cols=46 Identities=9% Similarity=0.040 Sum_probs=38.0
Q ss_pred CCeEEEEEEcCCCChhHHHHHHHHHHhHHHHHh--CCCEEEEEcCCCHH
Q 027527 96 DRKAVVAFARHFGCVLCRKRADYLAAKKDVMDA--SGVALVLIGPGSVE 142 (222)
Q Consensus 96 ~~~vvVvF~R~~~Cp~C~~el~~L~~~~~~l~~--~gv~lvaIs~~s~~ 142 (222)
+++ +++.|++.||+.|++.++.+.++.++++. ..+.++.|.++...
T Consensus 16 ~~~-~lv~f~a~wC~~C~~~~p~~~~~~~~~~~~~~~~~~~~vd~~~~~ 63 (102)
T cd03005 16 EGN-HFVKFFAPWCGHCKRLAPTWEQLAKKFNNENPSVKIAKVDCTQHR 63 (102)
T ss_pred cCC-EEEEEECCCCHHHHHhCHHHHHHHHHHhccCCcEEEEEEECCCCh
Confidence 444 78888999999999999999999999876 46888888877544
No 86
>PRK09381 trxA thioredoxin; Provisional
Probab=97.74 E-value=3.9e-05 Score=57.75 Aligned_cols=47 Identities=13% Similarity=0.069 Sum_probs=39.1
Q ss_pred CCeEEEEEEcCCCChhHHHHHHHHHHhHHHHHhCCCEEEEEcCCCHHH
Q 027527 96 DRKAVVAFARHFGCVLCRKRADYLAAKKDVMDASGVALVLIGPGSVEQ 143 (222)
Q Consensus 96 ~~~vvVvF~R~~~Cp~C~~el~~L~~~~~~l~~~gv~lvaIs~~s~~~ 143 (222)
.++.+|+.|+..|||.|+...+.|+++.+++.. ++.+..|..+....
T Consensus 20 ~~~~vvv~f~~~~C~~C~~~~p~~~~l~~~~~~-~~~~~~vd~~~~~~ 66 (109)
T PRK09381 20 ADGAILVDFWAEWCGPCKMIAPILDEIADEYQG-KLTVAKLNIDQNPG 66 (109)
T ss_pred CCCeEEEEEECCCCHHHHHHhHHHHHHHHHhCC-CcEEEEEECCCChh
Confidence 345688899999999999999999999998864 58888888876543
No 87
>cd03004 PDI_a_ERdj5_C PDIa family, C-terminal ERdj5 subfamily; ERdj5, also known as JPDI and macrothioredoxin, is a protein containing an N-terminal DnaJ domain and four redox active TRX domains. This subfamily is composed of the three TRX domains located at the C-terminal half of the protein. ERdj5 is a ubiquitous protein localized in the endoplasmic reticulum (ER) and is abundant in secretory cells. It's transcription is induced during ER stress. It interacts with BiP through its DnaJ domain in an ATP-dependent manner. BiP, an ER-resident member of the Hsp70 chaperone family, functions in ER-associated degradation and protein translocation. Also included in the alignment is the single complete TRX domain of an uncharacterized protein from Tetraodon nigroviridis, which also contains a DnaJ domain at its N-terminus.
Probab=97.73 E-value=0.00012 Score=54.51 Aligned_cols=54 Identities=11% Similarity=0.098 Sum_probs=41.7
Q ss_pred CeEEEEEEcCCCChhHHHHHHHHHHhHHHHHhCCCEEEEEcCCCHHHHHHHHHHcCCC
Q 027527 97 RKAVVAFARHFGCVLCRKRADYLAAKKDVMDASGVALVLIGPGSVEQARTFSEQTKFK 154 (222)
Q Consensus 97 ~~vvVvF~R~~~Cp~C~~el~~L~~~~~~l~~~gv~lvaIs~~s~~~i~~f~~~~~~p 154 (222)
++.+||.|++.||+.|+...+.+.++.+++. ..+.+..|.++.... .++++++.
T Consensus 19 ~~~v~v~f~a~wC~~C~~~~p~~~~~~~~~~-~~~~~~~vd~~~~~~---~~~~~~i~ 72 (104)
T cd03004 19 KEPWLVDFYAPWCGPCQALLPELRKAARALK-GKVKVGSVDCQKYES---LCQQANIR 72 (104)
T ss_pred CCeEEEEEECCCCHHHHHHHHHHHHHHHHhc-CCcEEEEEECCchHH---HHHHcCCC
Confidence 4578889999999999999999999998884 357888888876433 34444543
No 88
>TIGR01126 pdi_dom protein disulfide-isomerase domain. This model describes a domain of eukaryotic protein disulfide isomerases, generally found in two copies. The high cutoff for total score reflects the expectation of finding both copies. The domain is similar to thioredoxin but the redox-active disulfide region motif is APWCGHCK.
Probab=97.72 E-value=4e-05 Score=56.15 Aligned_cols=68 Identities=9% Similarity=0.054 Sum_probs=47.6
Q ss_pred cCCCeEEEEEEcCCCChhHHHHHHHHHHhHHHHHhCC-CEEEEEcCCCHHHHHHHHHHcCCC-Cc--eeecCChH
Q 027527 94 WKDRKAVVAFARHFGCVLCRKRADYLAAKKDVMDASG-VALVLIGPGSVEQARTFSEQTKFK-GE--VYADPNHS 164 (222)
Q Consensus 94 ~~~~~vvVvF~R~~~Cp~C~~el~~L~~~~~~l~~~g-v~lvaIs~~s~~~i~~f~~~~~~p-fp--il~Dpd~~ 164 (222)
...++++++.|+..||+.|+...+.+.++.++++..+ +.++.|..+.. ...++++++. +| ++.+++..
T Consensus 10 ~~~~~~~~i~f~~~~C~~c~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~---~~~~~~~~i~~~P~~~~~~~~~~ 81 (102)
T TIGR01126 10 VLSNKDVLVEFYAPWCGHCKNLAPEYEKLAKELKGDPDIVLAKVDATAE---KDLASRFGVSGFPTIKFFPKGKK 81 (102)
T ss_pred hccCCcEEEEEECCCCHHHHhhChHHHHHHHHhccCCceEEEEEEccch---HHHHHhCCCCcCCEEEEecCCCc
Confidence 3456788899999999999999999999888886553 77776666543 3344445544 34 45666654
No 89
>cd02997 PDI_a_PDIR PDIa family, PDIR subfamily; composed of proteins similar to human PDIR (for Protein Disulfide Isomerase Related). PDIR is composed of three redox active TRX (a) domains and an N-terminal redox inactive TRX-like (b) domain. Similar to PDI, it is involved in oxidative protein folding in the endoplasmic reticulum (ER) through its isomerase and chaperone activities. These activities are lower compared to PDI, probably due to PDIR acting only on a subset of proteins. PDIR is preferentially expressed in cells actively secreting proteins and its expression is induced by stress. Similar to PDI, the isomerase and chaperone activities of PDIR are independent; CXXC mutants lacking isomerase activity retain chaperone activity.
Probab=97.72 E-value=2.3e-05 Score=57.87 Aligned_cols=72 Identities=14% Similarity=0.086 Sum_probs=47.1
Q ss_pred CccCCCeEEEEEEcCCCChhHHHHHHHHHHhHHHHHh-CCCEEEEEcCCCHHHHHHHHHHcCCC-Cc-eeecCChH
Q 027527 92 DLWKDRKAVVAFARHFGCVLCRKRADYLAAKKDVMDA-SGVALVLIGPGSVEQARTFSEQTKFK-GE-VYADPNHS 164 (222)
Q Consensus 92 dl~~~~~vvVvF~R~~~Cp~C~~el~~L~~~~~~l~~-~gv~lvaIs~~s~~~i~~f~~~~~~p-fp-il~Dpd~~ 164 (222)
++.++.+.+++.|++.||+.|+...+.+.++.+++.+ ..+.++.|..+.. ....+++++++. +| ++..++++
T Consensus 12 ~~~~~~~~~~v~f~a~wC~~C~~~~~~~~~~~~~~~~~~~~~~~~id~~~~-~~~~~~~~~~i~~~Pt~~~~~~g~ 86 (104)
T cd02997 12 KFLKKEKHVLVMFYAPWCGHCKKMKPEFTKAATELKEDGKGVLAAVDCTKP-EHDALKEEYNVKGFPTFKYFENGK 86 (104)
T ss_pred HHHhhCCCEEEEEECCCCHHHHHhCHHHHHHHHHHhhCCceEEEEEECCCC-ccHHHHHhCCCccccEEEEEeCCC
Confidence 3334455789999999999999999999999988865 3455666666542 233445555552 44 33444443
No 90
>cd02962 TMX2 TMX2 family; composed of proteins similar to human TMX2, a 372-amino acid TRX-related transmembrane protein, identified and characterized through the cloning of its cDNA from a human fetal library. It contains a TRX domain but the redox active CXXC motif is replaced with SXXC. Sequence analysis predicts that TMX2 may be a Type I membrane protein, with its C-terminal half protruding on the luminal side of the endoplasmic reticulum (ER). In addition to the TRX domain, transmembrane region and ER-retention signal, TMX2 also contains a Myb DNA-binding domain repeat signature and a dileucine motif in the tail.
Probab=97.71 E-value=5.5e-05 Score=61.82 Aligned_cols=46 Identities=13% Similarity=-0.031 Sum_probs=40.7
Q ss_pred CeEEEEEEcCCCChhHHHHHHHHHHhHHHHHhCCCEEEEEcCCCHH
Q 027527 97 RKAVVAFARHFGCVLCRKRADYLAAKKDVMDASGVALVLIGPGSVE 142 (222)
Q Consensus 97 ~~vvVvF~R~~~Cp~C~~el~~L~~~~~~l~~~gv~lvaIs~~s~~ 142 (222)
++.+|+.|++.||++|+...+.+.++.+++...+++++.|..+...
T Consensus 47 ~~~vvV~Fya~wC~~Ck~l~p~l~~la~~~~~~~v~f~~VDvd~~~ 92 (152)
T cd02962 47 RVTWLVEFFTTWSPECVNFAPVFAELSLKYNNNNLKFGKIDIGRFP 92 (152)
T ss_pred CCEEEEEEECCCCHHHHHHHHHHHHHHHHcccCCeEEEEEECCCCH
Confidence 4678999999999999999999999999887778999999988654
No 91
>cd02996 PDI_a_ERp44 PDIa family, endoplasmic reticulum protein 44 (ERp44) subfamily; ERp44 is an ER-resident protein, induced during stress, involved in thiol-mediated ER retention. It contains an N-terminal TRX domain, similar to that of PDIa, with a CXFS motif followed by two redox inactive TRX-like domains, homologous to the b and b' domains of PDI. The CXFS motif in the N-terminal domain allows ERp44 to form stable reversible mixed disulfides with its substrates. Through this activity, ERp44 mediates the ER localization of Ero1alpha, a protein that oxidizes protein disulfide isomerases into their active form. ERp44 also prevents the secretion of unassembled cargo protein with unpaired cysteines. It also modulates the activity of inositol 1,4,5-triphosphate type I receptor (IP3R1), an intracellular channel protein that mediates calcium release from the ER to the cytosol.
Probab=97.71 E-value=6e-05 Score=56.84 Aligned_cols=50 Identities=8% Similarity=0.012 Sum_probs=38.6
Q ss_pred CccCCCeEEEEEEcCCCChhHHHHHHHHHHhHHHHHhC-----CCEEEEEcCCCH
Q 027527 92 DLWKDRKAVVAFARHFGCVLCRKRADYLAAKKDVMDAS-----GVALVLIGPGSV 141 (222)
Q Consensus 92 dl~~~~~vvVvF~R~~~Cp~C~~el~~L~~~~~~l~~~-----gv~lvaIs~~s~ 141 (222)
+..+..+.++|+|++.||+.|++..+.+.++.+++++. .+.+..|.++..
T Consensus 13 ~~i~~~~~vlv~F~a~wC~~C~~~~p~~~~~a~~~~~~~~~~~~~~~~~vd~d~~ 67 (108)
T cd02996 13 DILQSAELVLVNFYADWCRFSQMLHPIFEEAAAKIKEEFPDAGKVVWGKVDCDKE 67 (108)
T ss_pred HHHhcCCEEEEEEECCCCHHHHhhHHHHHHHHHHHhhccCCCCcEEEEEEECCCC
Confidence 34445577899999999999999999999988887532 366777777654
No 92
>PTZ00051 thioredoxin; Provisional
Probab=97.71 E-value=2.4e-05 Score=57.54 Aligned_cols=47 Identities=11% Similarity=0.147 Sum_probs=37.3
Q ss_pred ccCCCeEEEEEEcCCCChhHHHHHHHHHHhHHHHHhCCCEEEEEcCCCH
Q 027527 93 LWKDRKAVVAFARHFGCVLCRKRADYLAAKKDVMDASGVALVLIGPGSV 141 (222)
Q Consensus 93 l~~~~~vvVvF~R~~~Cp~C~~el~~L~~~~~~l~~~gv~lvaIs~~s~ 141 (222)
+.+.++.++++|++.||+.|+...+.|.++..++ .++.++.|..+..
T Consensus 14 ~~~~~~~vli~f~~~~C~~C~~~~~~l~~l~~~~--~~~~~~~vd~~~~ 60 (98)
T PTZ00051 14 TLSQNELVIVDFYAEWCGPCKRIAPFYEECSKEY--TKMVFVKVDVDEL 60 (98)
T ss_pred HHhcCCeEEEEEECCCCHHHHHHhHHHHHHHHHc--CCcEEEEEECcch
Confidence 3445678899999999999999999999888765 3578888877643
No 93
>cd02986 DLP Dim1 family, Dim1-like protein (DLP) subfamily; DLP is a novel protein which shares 38% sequence identity to Dim1. Like Dim1, it is also implicated in pre-mRNA splicing and cell cycle progression. DLP is located in the nucleus and has been shown to interact with the U5 small nuclear ribonucleoprotein particle (snRNP)-specific 102kD protein (or Prp6). Dim1 protein, also known as U5 snRNP-specific 15kD protein is a component of U5 snRNP, which pre-assembles with U4/U6 snRNPs to form a [U4/U6:U5] tri-snRNP complex required for pre-mRNA splicing. Dim1 adopts a thioredoxin fold but does not contain the redox active CXXC motif.
Probab=97.70 E-value=0.00013 Score=57.07 Aligned_cols=80 Identities=9% Similarity=0.052 Sum_probs=51.8
Q ss_pred CCeEEEEEEcCCCChhHHHHHHHHHHhHHHHHhCCCEEEEEcCCCHHHHHHHHHHcCC---CCceeecCChHHHHHcCCc
Q 027527 96 DRKAVVAFARHFGCVLCRKRADYLAAKKDVMDASGVALVLIGPGSVEQARTFSEQTKF---KGEVYADPNHSSYEALSFV 172 (222)
Q Consensus 96 ~~~vvVvF~R~~~Cp~C~~el~~L~~~~~~l~~~gv~lvaIs~~s~~~i~~f~~~~~~---pfpil~Dpd~~lyk~lGl~ 172 (222)
+.++||+.|.+.||++|+.-.+-|.++.+++... +.++-|..|... .+.+++++ |.-++.-....+.=.+|-.
T Consensus 13 ~~klVVVdF~a~WC~pCk~mdp~l~ela~~~~~~-~~f~kVDVDev~---dva~~y~I~amPtfvffkngkh~~~d~gt~ 88 (114)
T cd02986 13 AEKVLVLRFGRDEDAVCLQLDDILSKTSHDLSKM-ASIYLVDVDKVP---VYTQYFDISYIPSTIFFFNGQHMKVDYGSP 88 (114)
T ss_pred CCCEEEEEEeCCCChhHHHHHHHHHHHHHHccCc-eEEEEEeccccH---HHHHhcCceeCcEEEEEECCcEEEEecCCC
Confidence 4678999999999999999999999999988433 778888887544 44444443 4223333333333345544
Q ss_pred cccceee
Q 027527 173 SGVLVTF 179 (222)
Q Consensus 173 ~~~~~~~ 179 (222)
......+
T Consensus 89 ~~~k~~~ 95 (114)
T cd02986 89 DHTKFVG 95 (114)
T ss_pred CCcEEEE
Confidence 4433333
No 94
>cd02994 PDI_a_TMX PDIa family, TMX subfamily; composed of proteins similar to the TRX-related human transmembrane protein, TMX. TMX is a type I integral membrane protein; the N-terminal redox active TRX domain is present in the endoplasmic reticulum (ER) lumen while the C-terminus is oriented towards the cytoplasm. It is expressed in many cell types and its active site motif (CPAC) is unique. In vitro, TMX reduces interchain disulfides of insulin and renatures inactive RNase containing incorrect disulfide bonds. The C. elegans homolog, DPY-11, is expressed only in the hypodermis and resides in the cytoplasm. It is required for body and sensory organ morphogeneis. Another uncharacterized TRX-related transmembrane protein, human TMX4, is included in the alignment. The active site sequence of TMX4 is CPSC.
Probab=97.68 E-value=6.6e-05 Score=55.67 Aligned_cols=52 Identities=12% Similarity=0.024 Sum_probs=40.6
Q ss_pred EEEEEcCCCChhHHHHHHHHHHhHHHHHhCCCEEEEEcCCCHHHHHHHHHHcCCC
Q 027527 100 VVAFARHFGCVLCRKRADYLAAKKDVMDASGVALVLIGPGSVEQARTFSEQTKFK 154 (222)
Q Consensus 100 vVvF~R~~~Cp~C~~el~~L~~~~~~l~~~gv~lvaIs~~s~~~i~~f~~~~~~p 154 (222)
+|+.|++.||++|++..+.+.++.++++..++.+..|..++... .++++++.
T Consensus 19 ~lv~f~a~wC~~C~~~~p~~~~l~~~~~~~~v~~~~vd~~~~~~---~~~~~~i~ 70 (101)
T cd02994 19 WMIEFYAPWCPACQQLQPEWEEFADWSDDLGINVAKVDVTQEPG---LSGRFFVT 70 (101)
T ss_pred EEEEEECCCCHHHHHHhHHHHHHHHhhccCCeEEEEEEccCCHh---HHHHcCCc
Confidence 57999999999999999999999888766678888887775433 34444544
No 95
>COG4312 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=97.66 E-value=0.00012 Score=63.13 Aligned_cols=94 Identities=16% Similarity=0.267 Sum_probs=77.5
Q ss_pred CcEEecCCCCeEeCCCccCCCeEEEE--EE----cCCCChhHHHHHHHHHHhHHHHHhCCCEEEEEcCCCHHHHHHHHHH
Q 027527 77 TVKVYDVNGNAIPISDLWKDRKAVVA--FA----RHFGCVLCRKRADYLAAKKDVMDASGVALVLIGPGSVEQARTFSEQ 150 (222)
Q Consensus 77 df~L~D~~G~~v~Lsdl~~~~~vvVv--F~----R~~~Cp~C~~el~~L~~~~~~l~~~gv~lvaIs~~s~~~i~~f~~~ 150 (222)
++.....+| +.+|.||++++.-+|| |+ |..+||.|.--+..+.-....|+..++.+++|+....+++..|.++
T Consensus 54 ~Y~Fe~~~G-~~sLadLF~grsqLIvYhfmF~P~~~~~C~gCS~laD~~dGa~~HL~~~dv~lv~VsRAPl~~l~~~k~r 132 (247)
T COG4312 54 DYVFETENG-KKSLADLFGGRSQLIVYHFMFGPGWDHGCPGCSFLADHWDGAVAHLEHHDVTLVAVSRAPLEELVAYKRR 132 (247)
T ss_pred eeEeecCCc-chhHHHHhCCCceEEEEEEecCCCccCCCCchhhHHhhhhhhhhhHhhcCceEEEEecCcHHHHHHHHHh
Confidence 333333455 7899999988754443 33 3458999999999998888899999999999999999999999999
Q ss_pred cCCCCceeecCChHHHHHcCC
Q 027527 151 TKFKGEVYADPNHSSYEALSF 171 (222)
Q Consensus 151 ~~~pfpil~Dpd~~lyk~lGl 171 (222)
.||.||.+++.+..+=+.|.+
T Consensus 133 mGW~f~w~Ss~~s~Fn~Df~v 153 (247)
T COG4312 133 MGWQFPWVSSTDSDFNRDFQV 153 (247)
T ss_pred cCCcceeEeccCccccccccc
Confidence 999999999999887777755
No 96
>cd02995 PDI_a_PDI_a'_C PDIa family, C-terminal TRX domain (a') subfamily; composed of the C-terminal redox active a' domains of PDI, ERp72, ERp57 (or ERp60) and EFP1. PDI, ERp72 and ERp57 are endoplasmic reticulum (ER)-resident eukaryotic proteins involved in oxidative protein folding. They are oxidases, catalyzing the formation of disulfide bonds of newly synthesized polypeptides in the ER. They also exhibit reductase activity in acting as isomerases to correct any non-native disulfide bonds, as well as chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. PDI and ERp57 have the abb'a' domain structure (where a and a' are redox active TRX domains while b and b' are redox inactive TRX-like domains). PDI also contains an acidic region (c domain) after the a' domain that is absent in ERp57. ERp72 has an additional a domain at the N-terminus (a"abb'a' domain structure). ERp57 interacts with the lectin chaperones, calnexin and calreticu
Probab=97.65 E-value=0.00015 Score=53.29 Aligned_cols=47 Identities=13% Similarity=0.141 Sum_probs=39.4
Q ss_pred CeEEEEEEcCCCChhHHHHHHHHHHhHHHHHh-CCCEEEEEcCCCHHH
Q 027527 97 RKAVVAFARHFGCVLCRKRADYLAAKKDVMDA-SGVALVLIGPGSVEQ 143 (222)
Q Consensus 97 ~~vvVvF~R~~~Cp~C~~el~~L~~~~~~l~~-~gv~lvaIs~~s~~~ 143 (222)
++.++++|++.||+.|+...+.+.++.++++. ..+.+..|.++..+.
T Consensus 18 ~~~~~v~f~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~~~id~~~~~~ 65 (104)
T cd02995 18 DKDVLVEFYAPWCGHCKALAPIYEELAEKLKGDDNVVIAKMDATANDV 65 (104)
T ss_pred CCcEEEEEECCCCHHHHHHhhHHHHHHHHhcCCCCEEEEEEeCcchhh
Confidence 46788999999999999999999999998866 468888888876543
No 97
>PF00837 T4_deiodinase: Iodothyronine deiodinase; InterPro: IPR000643 Iodothyronine deiodinase (1.97.1.10 from EC) (DI) [] is the vertebrate enzyme responsible for the deiodination of the prohormone thyroxine (T4 or 3,5,3',5'-tetraiodothyronine) into the biologically active hormone T3 (3,5,3'-triiodothyronine) and of T3 into the inactive metabolite T2 (3,3'-diiodothyronine). All known DI are proteins of about 250 residues that contain a selenocysteine at their active site. Three types of DI are known, type II is essential for providing the brain with the appropriate levels of T3 during the critical period of development, and type III is essential for the regulation of thyroid hormone inactivation during embryological development.; GO: 0004800 thyroxine 5'-deiodinase activity, 0055114 oxidation-reduction process
Probab=97.61 E-value=0.00023 Score=62.10 Aligned_cols=108 Identities=13% Similarity=0.112 Sum_probs=83.6
Q ss_pred CccccCcCCCcEEecCCCCe-EeCCCccCCCeEEEEEEcCCCChhHHHHHHHHHHhHHHHHhCCCEEEEEcCC-------
Q 027527 68 SEDTKNLLDTVKVYDVNGNA-IPISDLWKDRKAVVAFARHFGCVLCRKRADYLAAKKDVMDASGVALVLIGPG------- 139 (222)
Q Consensus 68 ~~~~g~~apdf~L~D~~G~~-v~Lsdl~~~~~vvVvF~R~~~Cp~C~~el~~L~~~~~~l~~~gv~lvaIs~~------- 139 (222)
+...|..|||.+|...+|+. .++.|+.++++.+|++|...-||+=+..+.+++++.+++.+. ++.+.|...
T Consensus 72 ~a~~G~~APns~vv~l~g~~~~~ildf~~g~RPLVlnFGS~TCPpF~~~l~~f~~l~~~f~d~-adFl~VYI~EAHpsDg 150 (237)
T PF00837_consen 72 EAKLGGPAPNSPVVTLDGQRSCRILDFAKGNRPLVLNFGSCTCPPFMAKLDAFKRLVEDFSDV-ADFLIVYIEEAHPSDG 150 (237)
T ss_pred ceeCCCCCCCCceEeeCCCcceeHHHhccCCCCeEEEcccccchHHHHHHHHHHHHHHHhhhh-hheehhhHhhhCcCCC
Confidence 35789999999999999999 999999888888999999999999999999999999988651 233333221
Q ss_pred --------------CH----HHHHHHHHHcCCCCceeec-CChHHHHHcCCccccce
Q 027527 140 --------------SV----EQARTFSEQTKFKGEVYAD-PNHSSYEALSFVSGVLV 177 (222)
Q Consensus 140 --------------s~----~~i~~f~~~~~~pfpil~D-pd~~lyk~lGl~~~~~~ 177 (222)
+. ..++.+.++ ...+|+++| -++...++||.......
T Consensus 151 W~~~~~~~~i~qh~sledR~~aA~~l~~~-~~~~pi~vD~mdN~~~~~YgA~PeRly 206 (237)
T PF00837_consen 151 WAFGNNPYEIPQHRSLEDRLRAAKLLKEE-FPQCPIVVDTMDNNFNKAYGALPERLY 206 (237)
T ss_pred ccCCCCceeecCCCCHHHHHHHHHHHHhh-CCCCCEEEEccCCHHHHHhCCCcceEE
Confidence 11 233444444 467899998 68888999998766543
No 98
>TIGR01295 PedC_BrcD bacteriocin transport accessory protein, putative. This model describes a small family of proteins believed to aid in the export of various class II bacteriocins, which are ribosomally-synthesized, non-lantibiotic bacterial peptide antibiotics. Members of this family are found in operons for pediocin PA-1 from Pediococcus acidilactici and brochocin-C from Brochothrix campestris.
Probab=97.60 E-value=4.6e-05 Score=59.79 Aligned_cols=59 Identities=14% Similarity=0.228 Sum_probs=45.1
Q ss_pred cCCCeEEEEEEcCCCChhHHHHHHHHHHhHHHHHhCCCEEEEEcCCCH--------HHHHHHHHHcCCCC
Q 027527 94 WKDRKAVVAFARHFGCVLCRKRADYLAAKKDVMDASGVALVLIGPGSV--------EQARTFSEQTKFKG 155 (222)
Q Consensus 94 ~~~~~vvVvF~R~~~Cp~C~~el~~L~~~~~~l~~~gv~lvaIs~~s~--------~~i~~f~~~~~~pf 155 (222)
.+.+..+|++|.+.|||+|+...+.|.++.++ .++.+.-|..+.. +.+.+|.+.++++.
T Consensus 20 i~~~~~~iv~f~~~~Cp~C~~~~P~l~~~~~~---~~~~~y~vdvd~~~~~~~~~~~~~~~~~~~~~i~~ 86 (122)
T TIGR01295 20 LDKKETATFFIGRKTCPYCRKFSGTLSGVVAQ---TKAPIYYIDSENNGSFEMSSLNDLTAFRSRFGIPT 86 (122)
T ss_pred HHcCCcEEEEEECCCChhHHHHhHHHHHHHHh---cCCcEEEEECCCccCcCcccHHHHHHHHHHcCCcc
Confidence 34567789999999999999999999999876 4466777777621 26678888776543
No 99
>cd02984 TRX_PICOT TRX domain, PICOT (for PKC-interacting cousin of TRX) subfamily; PICOT is a protein that interacts with protein kinase C (PKC) theta, a calcium independent PKC isoform selectively expressed in skeletal muscle and T lymphocytes. PICOT contains an N-terminal TRX-like domain, which does not contain the catalytic CXXC motif, followed by one to three glutaredoxin domains. The TRX-like domain is required for interaction with PKC theta. PICOT inhibits the activation of c-Jun N-terminal kinase and the transcription factors, AP-1 and NF-kB, induced by PKC theta or T-cell activating stimuli.
Probab=97.60 E-value=9.8e-05 Score=54.04 Aligned_cols=43 Identities=12% Similarity=0.047 Sum_probs=35.4
Q ss_pred CeEEEEEEcCCCChhHHHHHHHHHHhHHHHHhCCCEEEEEcCCC
Q 027527 97 RKAVVAFARHFGCVLCRKRADYLAAKKDVMDASGVALVLIGPGS 140 (222)
Q Consensus 97 ~~vvVvF~R~~~Cp~C~~el~~L~~~~~~l~~~gv~lvaIs~~s 140 (222)
++.++++|++.||+.|++..+.|.++.+++ ..++.++.|..+.
T Consensus 14 ~~~v~v~f~~~~C~~C~~~~~~l~~l~~~~-~~~i~~~~vd~~~ 56 (97)
T cd02984 14 SKLLVLHFWAPWAEPCKQMNQVFEELAKEA-FPSVLFLSIEAEE 56 (97)
T ss_pred CCEEEEEEECCCCHHHHHHhHHHHHHHHHh-CCceEEEEEcccc
Confidence 367888889999999999999999888887 5577888876653
No 100
>cd03001 PDI_a_P5 PDIa family, P5 subfamily; composed of eukaryotic proteins similar to human P5, a PDI-related protein with a domain structure of aa'b (where a and a' are redox active TRX domains and b is a redox inactive TRX-like domain). Like PDI, P5 is located in the endoplasmic reticulum (ER) and displays both isomerase and chaperone activities, which are independent of each other. Compared to PDI, the isomerase and chaperone activities of P5 are lower. The first cysteine in the CXXC motif of both redox active domains in P5 is necessary for isomerase activity. The P5 gene was first isolated as an amplified gene from a hydroxyurea-resistant hamster cell line. The zebrafish P5 homolog has been implicated to play a critical role in establishing left/right asymmetries in the embryonic midline. Some members of this subfamily are P5-like proteins containing only one redox active TRX domain.
Probab=97.58 E-value=0.00026 Score=52.09 Aligned_cols=46 Identities=9% Similarity=0.016 Sum_probs=36.2
Q ss_pred CCeEEEEEEcCCCChhHHHHHHHHHHhHHHHHhCCCEEEEEcCCCHH
Q 027527 96 DRKAVVAFARHFGCVLCRKRADYLAAKKDVMDASGVALVLIGPGSVE 142 (222)
Q Consensus 96 ~~~vvVvF~R~~~Cp~C~~el~~L~~~~~~l~~~gv~lvaIs~~s~~ 142 (222)
.++.+++.|++.||+.|++..+.+.++.+++.. .+.+..|..+...
T Consensus 17 ~~~~vlv~f~a~~C~~C~~~~~~~~~~~~~~~~-~~~~~~id~~~~~ 62 (103)
T cd03001 17 SDDVWLVEFYAPWCGHCKNLAPEWKKAAKALKG-IVKVGAVDADVHQ 62 (103)
T ss_pred CCCcEEEEEECCCCHHHHHHhHHHHHHHHHhcC-CceEEEEECcchH
Confidence 355577788899999999999999999888753 4777878776543
No 101
>cd02961 PDI_a_family Protein Disulfide Isomerase (PDIa) family, redox active TRX domains; composed of eukaryotic proteins involved in oxidative protein folding in the endoplasmic reticulum (ER) by acting as catalysts and folding assistants. Members of this family include PDI and PDI-related proteins like ERp72, ERp57 (or ERp60), ERp44, P5, PDIR, ERp46 and the transmembrane PDIs. PDI, ERp57, ERp72, P5, PDIR and ERp46 are all oxidases, catalyzing the formation of disulfide bonds of newly synthesized polypeptides in the ER. They also exhibit reductase activity in acting as isomerases to correct any non-native disulfide bonds, as well as chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. These proteins usually contain multiple copies of a redox active TRX (a) domain containing a CXXC motif, and may also contain one or more redox inactive TRX-like (b) domains. Only one a domain is required for the oxidase function but multiple copies
Probab=97.57 E-value=0.0001 Score=53.02 Aligned_cols=69 Identities=13% Similarity=0.078 Sum_probs=49.6
Q ss_pred CccCCCeEEEEEEcCCCChhHHHHHHHHHHhHHHHH-hCCCEEEEEcCCCHHHHHHHHHHcCCC-Cc--eeecCCh
Q 027527 92 DLWKDRKAVVAFARHFGCVLCRKRADYLAAKKDVMD-ASGVALVLIGPGSVEQARTFSEQTKFK-GE--VYADPNH 163 (222)
Q Consensus 92 dl~~~~~vvVvF~R~~~Cp~C~~el~~L~~~~~~l~-~~gv~lvaIs~~s~~~i~~f~~~~~~p-fp--il~Dpd~ 163 (222)
+..++++.+|++|+..||+.|++..+.+.+..+.++ ..++.++.|..+. ...+++++++. +| ++.+++.
T Consensus 10 ~~i~~~~~~~v~f~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~~~v~~~~---~~~~~~~~~i~~~Pt~~~~~~~~ 82 (101)
T cd02961 10 ELVKDSKDVLVEFYAPWCGHCKALAPEYEKLAKELKGDGKVVVAKVDCTA---NNDLCSEYGVRGYPTIKLFPNGS 82 (101)
T ss_pred HHHhCCCcEEEEEECCCCHHHHhhhHHHHHHHHHhccCCceEEEEeeccc---hHHHHHhCCCCCCCEEEEEcCCC
Confidence 334445578888899999999999999999988886 5678888887775 33445555554 34 5556653
No 102
>TIGR01068 thioredoxin thioredoxin. Several proteins, such as protein disulfide isomerase, have two or more copies of a domain closely related to thioredoxin. This model is designed to recognize authentic thioredoxin, a small protein that should be hit exactly once by this model.
Probab=97.54 E-value=0.00015 Score=52.65 Aligned_cols=54 Identities=15% Similarity=0.133 Sum_probs=40.7
Q ss_pred CeEEEEEEcCCCChhHHHHHHHHHHhHHHHHhCCCEEEEEcCCCHHHHHHHHHHcCCC
Q 027527 97 RKAVVAFARHFGCVLCRKRADYLAAKKDVMDASGVALVLIGPGSVEQARTFSEQTKFK 154 (222)
Q Consensus 97 ~~vvVvF~R~~~Cp~C~~el~~L~~~~~~l~~~gv~lvaIs~~s~~~i~~f~~~~~~p 154 (222)
++.++++|+..||+.|+...+.|+++.+++. ..+.++.|..+.... +++++++.
T Consensus 14 ~~~vvi~f~~~~C~~C~~~~~~l~~~~~~~~-~~~~~~~vd~~~~~~---~~~~~~v~ 67 (101)
T TIGR01068 14 DKPVLVDFWAPWCGPCKMIAPILEELAKEYE-GKVKFVKLNVDENPD---IAAKYGIR 67 (101)
T ss_pred CCcEEEEEECCCCHHHHHhCHHHHHHHHHhc-CCeEEEEEECCCCHH---HHHHcCCC
Confidence 4578888899999999999999999888774 358888888775533 33444543
No 103
>cd02947 TRX_family TRX family; composed of two groups: Group I, which includes proteins that exclusively encode a TRX domain; and Group II, which are composed of fusion proteins of TRX and additional domains. Group I TRX is a small ancient protein that alter the redox state of target proteins via the reversible oxidation of an active site dithiol, present in a CXXC motif, partially exposed at the protein's surface. TRX reduces protein disulfide bonds, resulting in a disulfide bond at its active site. Oxidized TRX is converted to the active form by TRX reductase, using reducing equivalents derived from either NADPH or ferredoxins. By altering their redox state, TRX regulates the functions of at least 30 target proteins, some of which are enzymes and transcription factors. It also plays an important role in the defense against oxidative stress by directly reducing hydrogen peroxide and certain radicals, and by serving as a reductant for peroxiredoxins. At least two major types of functio
Probab=97.52 E-value=8.8e-05 Score=52.18 Aligned_cols=43 Identities=21% Similarity=0.146 Sum_probs=36.2
Q ss_pred CCeEEEEEEcCCCChhHHHHHHHHHHhHHHHHhCCCEEEEEcCCC
Q 027527 96 DRKAVVAFARHFGCVLCRKRADYLAAKKDVMDASGVALVLIGPGS 140 (222)
Q Consensus 96 ~~~vvVvF~R~~~Cp~C~~el~~L~~~~~~l~~~gv~lvaIs~~s 140 (222)
+.+.++++|+..||+.|++..+.+++...+ ..++.++.|..+.
T Consensus 9 ~~~~~ll~~~~~~C~~C~~~~~~~~~~~~~--~~~~~~~~i~~~~ 51 (93)
T cd02947 9 SAKPVVVDFWAPWCGPCKAIAPVLEELAEE--YPKVKFVKVDVDE 51 (93)
T ss_pred cCCcEEEEEECCCChhHHHhhHHHHHHHHH--CCCceEEEEECCC
Confidence 446788888999999999999999888776 6778899888876
No 104
>cd02992 PDI_a_QSOX PDIa family, Quiescin-sulfhydryl oxidase (QSOX) subfamily; QSOX is a eukaryotic protein containing an N-terminal redox active TRX domain, similar to that of PDI, and a small C-terminal flavin adenine dinucleotide (FAD)-binding domain homologous to the yeast ERV1p protein. QSOX oxidizes thiol groups to disulfides like PDI, however, unlike PDI, this oxidation is accompanied by the reduction of oxygen to hydrogen peroxide. QSOX is localized in high concentrations in cells with heavy secretory load and prefers peptides and proteins as substrates, not monothiols like glutathione. Inside the cell, QSOX is found in the endoplasmic reticulum and Golgi. The flow of reducing equivalents in a QSOX-catalyzed reaction goes from the dithiol substrate - dithiol of the QSOX TRX domain - dithiols of the QSOX ERV1p domain - FAD - oxygen.
Probab=97.50 E-value=0.0005 Score=52.96 Aligned_cols=57 Identities=11% Similarity=-0.015 Sum_probs=41.2
Q ss_pred CeEEEEEEcCCCChhHHHHHHHHHHhHHHHHhC-C-CEEEEEcCCCHHHHHHHHHHcCCC
Q 027527 97 RKAVVAFARHFGCVLCRKRADYLAAKKDVMDAS-G-VALVLIGPGSVEQARTFSEQTKFK 154 (222)
Q Consensus 97 ~~vvVvF~R~~~Cp~C~~el~~L~~~~~~l~~~-g-v~lvaIs~~s~~~i~~f~~~~~~p 154 (222)
++.+|+.|++.||++|+...+.+.++.+++++. + +.+..|.++.. ....+++++++.
T Consensus 19 ~~~vvV~f~a~wC~~C~~~~~~~~~la~~~~~~~~~v~~~~vd~~~~-~~~~~~~~~~i~ 77 (114)
T cd02992 19 PSAWLVEFYASWCGHCRAFAPTWKKLARDLRKWRPVVRVAAVDCADE-ENVALCRDFGVT 77 (114)
T ss_pred CCeEEEEEECCCCHHHHHHhHHHHHHHHHHHhcCCceEEEEEeccch-hhHHHHHhCCCC
Confidence 468899999999999999999999999888643 3 66666665432 234455555544
No 105
>PF00085 Thioredoxin: Thioredoxin; InterPro: IPR013766 Thioredoxins [, , , ] are small disulphide-containing redox proteins that have been found in all the kingdoms of living organisms. Thioredoxin serves as a general protein disulphide oxidoreductase. It interacts with a broad range of proteins by a redox mechanism based on reversible oxidation of two cysteine thiol groups to a disulphide, accompanied by the transfer of two electrons and two protons. The net result is the covalent interconversion of a disulphide and a dithiol. In the NADPH-dependent protein disulphide reduction, thioredoxin reductase (TR) catalyses the reduction of oxidised thioredoxin (trx) by NADPH using FAD and its redox-active disulphide; reduced thioredoxin then directly reduces the disulphide in the substrate protein []. Thioredoxin is present in prokaryotes and eukaryotes and the sequence around the redox-active disulphide bond is well conserved. All thioredoxins contain a cis-proline located in a loop preceding beta-strand 4, which makes contact with the active site cysteines, and is important for stability and function []. Thioredoxin belongs to a structural family that includes glutaredoxin, glutathione peroxidase, bacterial protein disulphide isomerase DsbA, and the N-terminal domain of glutathione transferase []. Thioredoxins have a beta-alpha unit preceding the motif common to all these proteins. A number of eukaryotic proteins contain domains evolutionary related to thioredoxin, most of them are protein disulphide isomerases (PDI). PDI (5.3.4.1 from EC) [, , ] is an endoplasmic reticulum multi-functional enzyme that catalyses the formation and rearrangement of disulphide bonds during protein folding []. All PDI contains two or three (ERp72) copies of the thioredoxin domain, each of which contributes to disulphide isomerase activity, but which are functionally non-equivalent []. Moreover, PDI exhibits chaperone-like activity towards proteins that contain no disulphide bonds, i.e. behaving independently of its disulphide isomerase activity []. The various forms of PDI which are currently known are: PDI major isozyme; a multifunctional protein that also function as the beta subunit of prolyl 4-hydroxylase (1.14.11.2 from EC), as a component of oligosaccharyl transferase (2.4.1.119 from EC), as thyroxine deiodinase (3.8.1.4 from EC), as glutathione-insulin transhydrogenase (1.8.4.2 from EC) and as a thyroid hormone-binding protein ERp60 (ER-60; 58 Kd microsomal protein). ERp60 was originally thought to be a phosphoinositide-specific phospholipase C isozyme and later to be a protease. ERp72. ERp5. Bacterial proteins that act as thiol:disulphide interchange proteins that allows disulphide bond formation in some periplasmic proteins also contain a thioredoxin domain. These proteins include: Escherichia coli DsbA (or PrfA) and its orthologs in Vibrio cholerae (TtcpG) and Haemophilus influenzae (Por). E. coli DsbC (or XpRA) and its orthologues in Erwinia chrysanthemi and H. influenzae. E. coli DsbD (or DipZ) and its H. influenzae orthologue. E. coli DsbE (or CcmG) and orthologues in H. influenzae. Rhodobacter capsulatus (Rhodopseudomonas capsulata) (HelX), Rhiziobiacae (CycY and TlpA). This entry represents the thioredoxin domain.; GO: 0045454 cell redox homeostasis; PDB: 3ED3_B 1EP7_A 1EP8_B 1TOF_A 2OE3_B 2OE1_B 2OE0_B 1V98_A 3H79_A 3CXG_A ....
Probab=97.46 E-value=0.00047 Score=50.32 Aligned_cols=54 Identities=15% Similarity=0.173 Sum_probs=43.3
Q ss_pred CeEEEEEEcCCCChhHHHHHHHHHHhHHHHHhCCCEEEEEcCCCHHHHHHHHHHcCCC
Q 027527 97 RKAVVAFARHFGCVLCRKRADYLAAKKDVMDASGVALVLIGPGSVEQARTFSEQTKFK 154 (222)
Q Consensus 97 ~~vvVvF~R~~~Cp~C~~el~~L~~~~~~l~~~gv~lvaIs~~s~~~i~~f~~~~~~p 154 (222)
.+.+|+.|...||+.|+...+.|.++.+++.+ ++.++-|..+.. +.+++++++.
T Consensus 17 ~~~vvv~f~~~~C~~C~~~~~~~~~~~~~~~~-~v~~~~vd~~~~---~~l~~~~~v~ 70 (103)
T PF00085_consen 17 DKPVVVYFYAPWCPPCKAFKPILEKLAKEYKD-NVKFAKVDCDEN---KELCKKYGVK 70 (103)
T ss_dssp SSEEEEEEESTTSHHHHHHHHHHHHHHHHTTT-TSEEEEEETTTS---HHHHHHTTCS
T ss_pred CCCEEEEEeCCCCCccccccceeccccccccc-ccccchhhhhcc---chhhhccCCC
Confidence 45677777789999999999999999999877 899999998854 4455555554
No 106
>COG0526 TrxA Thiol-disulfide isomerase and thioredoxins [Posttranslational modification, protein turnover, chaperones / Energy production and conversion]
Probab=97.39 E-value=0.00075 Score=48.25 Aligned_cols=66 Identities=18% Similarity=0.193 Sum_probs=43.9
Q ss_pred CeEEEEEEcCCCChhHHHHHHHHHHhHHHHHhCCCEEEEEcCC--CHHHHHHHHH-HcCCC-CceeecCCh
Q 027527 97 RKAVVAFARHFGCVLCRKRADYLAAKKDVMDASGVALVLIGPG--SVEQARTFSE-QTKFK-GEVYADPNH 163 (222)
Q Consensus 97 ~~vvVvF~R~~~Cp~C~~el~~L~~~~~~l~~~gv~lvaIs~~--s~~~i~~f~~-~~~~p-fpil~Dpd~ 163 (222)
.+.+++.|++.||+.|+.+++.|.+..+++.. .+.++.|... ..+....|.. -..+| +.++.|.+.
T Consensus 32 ~~~~~v~f~~~~C~~C~~~~~~l~~~~~~~~~-~~~~~~i~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~ 101 (127)
T COG0526 32 GKPVLVDFWAPWCPPCRAEAPLLEELAEEYGG-DVEVVAVNVDDENPDLAAEFGVAVRSIPTLLLFKDGKE 101 (127)
T ss_pred CceEEEEEEcCcCHHHHhhchhHHHHHHHhcC-CcEEEEEECCCCChHHHHHHhhhhccCCeEEEEeCcch
Confidence 34455555699999999999999999998866 7788888875 3344444442 23333 234445554
No 107
>PF13098 Thioredoxin_2: Thioredoxin-like domain; PDB: 1T3B_A 2L57_A 1EEJ_B 1TJD_A 1JZD_B 1JZO_A 1G0T_B 3GV1_A 1V58_A 2H0H_A ....
Probab=97.39 E-value=0.00028 Score=53.01 Aligned_cols=82 Identities=13% Similarity=0.185 Sum_probs=46.2
Q ss_pred CCeEEEEEEcCCCChhHHHHHHHHHHhHHHHH--hCCCEEEEEcCCCHH-HHHHHHHHcCCCCceeecCChHHHHHcCCc
Q 027527 96 DRKAVVAFARHFGCVLCRKRADYLAAKKDVMD--ASGVALVLIGPGSVE-QARTFSEQTKFKGEVYADPNHSSYEALSFV 172 (222)
Q Consensus 96 ~~~vvVvF~R~~~Cp~C~~el~~L~~~~~~l~--~~gv~lvaIs~~s~~-~i~~f~~~~~~pfpil~Dpd~~lyk~lGl~ 172 (222)
.++.+|++|...|||.|++.-.++.+..+-.+ +.++.++.+..++.. ....+....+.+. +...+.++.+.||+.
T Consensus 4 ~~k~~v~~F~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~l~~~~~v~ 81 (112)
T PF13098_consen 4 NGKPIVVVFTDPWCPYCKKLEKELFPDNDVARYLKDDFQVIFVNIDDSRDESEAVLDFDGQKN--VRLSNKELAQRYGVN 81 (112)
T ss_dssp TSSEEEEEEE-TT-HHHHHHHHHHHHHHHHHCEEHCECEEEECESHSHHHHHHHHHSHTCHSS--CHHHHHHHHHHTT--
T ss_pred CCCEEEEEEECCCCHHHHHHHHHHHHHHHHHHHhhcCeEEEEEecCCcccccccccccccchh--hhHHHHHHHHHcCCC
Confidence 34556666689999999987777776544221 336888888887664 3334444323211 112334677777776
Q ss_pred cccceee
Q 027527 173 SGVLVTF 179 (222)
Q Consensus 173 ~~~~~~~ 179 (222)
-++...+
T Consensus 82 gtPt~~~ 88 (112)
T PF13098_consen 82 GTPTIVF 88 (112)
T ss_dssp SSSEEEE
T ss_pred ccCEEEE
Confidence 6665555
No 108
>cd02952 TRP14_like Human TRX-related protein 14 (TRP14)-like family; composed of proteins similar to TRP14, a 14kD cytosolic protein that shows disulfide reductase activity in vitro with a different substrate specificity compared with another human cytosolic protein, TRX1. TRP14 catalyzes the reduction of small disulfide-containing peptides but does not reduce disulfides of ribonucleotide reductase, peroxiredoxin and methionine sulfoxide reductase, which are TRX1 substrates. TRP14 also plays a role in tumor necrosis factor (TNF)-alpha signaling pathways, distinct from that of TRX1. Its depletion promoted TNF-alpha induced activation of c-Jun N-terminal kinase and mitogen-activated protein kinases.
Probab=97.36 E-value=0.00051 Score=54.00 Aligned_cols=43 Identities=12% Similarity=0.136 Sum_probs=35.0
Q ss_pred eEEEEEEcC-------CCChhHHHHHHHHHHhHHHHHhCCCEEEEEcCCCH
Q 027527 98 KAVVAFARH-------FGCVLCRKRADYLAAKKDVMDASGVALVLIGPGSV 141 (222)
Q Consensus 98 ~vvVvF~R~-------~~Cp~C~~el~~L~~~~~~l~~~gv~lvaIs~~s~ 141 (222)
+.+||.|++ .||++|+...+.|.++.+++. .++.++-|..|+.
T Consensus 22 ~~vvV~F~A~~~~~~~~WC~pCr~~~P~l~~l~~~~~-~~v~fv~Vdvd~~ 71 (119)
T cd02952 22 KPIFILFYGDKDPDGQSWCPDCVKAEPVVREALKAAP-EDCVFIYCDVGDR 71 (119)
T ss_pred CeEEEEEEccCCCCCCCCCHhHHhhchhHHHHHHHCC-CCCEEEEEEcCCc
Confidence 456667777 999999999999999988875 3588888888753
No 109
>KOG0907 consensus Thioredoxin [Posttranslational modification, protein turnover, chaperones]
Probab=97.32 E-value=0.00045 Score=53.18 Aligned_cols=53 Identities=15% Similarity=0.133 Sum_probs=44.8
Q ss_pred CeEEEEEEcCCCChhHHHHHHHHHHhHHHHHhCCCEEEEEcCCCHHHHHHHHHHcCCC
Q 027527 97 RKAVVAFARHFGCVLCRKRADYLAAKKDVMDASGVALVLIGPGSVEQARTFSEQTKFK 154 (222)
Q Consensus 97 ~~vvVvF~R~~~Cp~C~~el~~L~~~~~~l~~~gv~lvaIs~~s~~~i~~f~~~~~~p 154 (222)
++.+|+.|.++||++|+.-.+.+.++..++.+ +.++-|..|. ...++++.++.
T Consensus 21 ~kliVvdF~a~wCgPCk~i~P~~~~La~~y~~--v~Flkvdvde---~~~~~~~~~V~ 73 (106)
T KOG0907|consen 21 DKLVVVDFYATWCGPCKAIAPKFEKLAEKYPD--VVFLKVDVDE---LEEVAKEFNVK 73 (106)
T ss_pred CCeEEEEEECCCCcchhhhhhHHHHHHHHCCC--CEEEEEeccc---CHhHHHhcCce
Confidence 57888889999999999999999999998866 8889999887 66676666654
No 110
>PLN00410 U5 snRNP protein, DIM1 family; Provisional
Probab=97.30 E-value=0.00091 Score=54.21 Aligned_cols=55 Identities=16% Similarity=0.175 Sum_probs=40.6
Q ss_pred CCeEEEEEEcCCCChhHHHHHHHHHHhHHHHHhCCCEEEEEcCCCHHHHHHHHHHcCCC
Q 027527 96 DRKAVVAFARHFGCVLCRKRADYLAAKKDVMDASGVALVLIGPGSVEQARTFSEQTKFK 154 (222)
Q Consensus 96 ~~~vvVvF~R~~~Cp~C~~el~~L~~~~~~l~~~gv~lvaIs~~s~~~i~~f~~~~~~p 154 (222)
+.++||+.|++.||++|+...+-|.++.+++.+. +.++-|..|... .+.+++++.
T Consensus 22 ~~~lVVvdF~A~WCgpCk~m~p~l~~la~~~~~~-~~~~kVDVDe~~---dla~~y~I~ 76 (142)
T PLN00410 22 EERLVVIRFGHDWDETCMQMDEVLASVAETIKNF-AVIYLVDITEVP---DFNTMYELY 76 (142)
T ss_pred CCCEEEEEEECCCChhHHHHHHHHHHHHHHcCCc-eEEEEEECCCCH---HHHHHcCcc
Confidence 3567889999999999999999999998887432 667888887543 334444443
No 111
>cd01659 TRX_superfamily Thioredoxin (TRX) superfamily; a large, diverse group of proteins containing a TRX-fold. Many members contain a classic TRX domain with a redox active CXXC motif. They function as protein disulfide oxidoreductases (PDOs), altering the redox state of target proteins via the reversible oxidation of their active site dithiol. The PDO members of this superfamily include TRX, protein disulfide isomerase (PDI), tlpA-like, glutaredoxin, NrdH redoxin, and the bacterial Dsb (DsbA, DsbC, DsbG, DsbE, DsbDgamma) protein families. Members of the superfamily that do not function as PDOs but contain a TRX-fold domain include phosducins, peroxiredoxins and glutathione (GSH) peroxidases, SCO proteins, GSH transferases (GST, N-terminal domain), arsenic reductases, TRX-like ferredoxins and calsequestrin, among others.
Probab=97.19 E-value=0.0017 Score=41.21 Aligned_cols=45 Identities=13% Similarity=0.120 Sum_probs=37.4
Q ss_pred EEEEcCCCChhHHHHHHHHHHhHHHHHhCCCEEEEEcCCCHHHHHHH
Q 027527 101 VAFARHFGCVLCRKRADYLAAKKDVMDASGVALVLIGPGSVEQARTF 147 (222)
Q Consensus 101 VvF~R~~~Cp~C~~el~~L~~~~~~l~~~gv~lvaIs~~s~~~i~~f 147 (222)
|++|+..||+.|++....+.+. +....++.++.+..+.......+
T Consensus 1 l~~~~~~~c~~c~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~ 45 (69)
T cd01659 1 LVLFYAPWCPFCQALRPVLAEL--ALLNKGVKFEAVDVDEDPALEKE 45 (69)
T ss_pred CEEEECCCChhHHhhhhHHHHH--HhhCCCcEEEEEEcCCChHHhhH
Confidence 4678899999999999999998 55677899999999877655554
No 112
>PHA02278 thioredoxin-like protein
Probab=97.13 E-value=0.00069 Score=51.69 Aligned_cols=45 Identities=11% Similarity=0.230 Sum_probs=34.8
Q ss_pred CCCeEEEEEEcCCCChhHHHHHHHHHHhHHHHHhCCCEEEEEcCCC
Q 027527 95 KDRKAVVAFARHFGCVLCRKRADYLAAKKDVMDASGVALVLIGPGS 140 (222)
Q Consensus 95 ~~~~vvVvF~R~~~Cp~C~~el~~L~~~~~~l~~~gv~lvaIs~~s 140 (222)
..++.+|+.|++.||++|+...+.|.++.++.. ..+.++-|..+.
T Consensus 12 ~~~~~vvV~F~A~WCgpCk~m~p~l~~l~~~~~-~~~~~~~vdvd~ 56 (103)
T PHA02278 12 RQKKDVIVMITQDNCGKCEILKSVIPMFQESGD-IKKPILTLNLDA 56 (103)
T ss_pred hCCCcEEEEEECCCCHHHHhHHHHHHHHHhhhc-CCceEEEEECCc
Confidence 345678999999999999999999999876642 235677777664
No 113
>cd02975 PfPDO_like_N Pyrococcus furiosus protein disulfide oxidoreductase (PfPDO)-like family, N-terminal TRX-fold subdomain; composed of proteins with similarity to PfPDO, a redox active thermostable protein believed to be the archaeal counterpart of bacterial DsbA and eukaryotic protein disulfide isomerase (PDI), which are both involved in oxidative protein folding. PfPDO contains two redox active CXXC motifs in two contiguous TRX-fold subdomains. The active site in the N-terminal TRX-fold subdomain is required for isomerase but not for reductase activity of PfPDO. The exclusive presence of PfPDO-like proteins in extremophiles may suggest that they have a special role in adaptation to extreme conditions.
Probab=97.07 E-value=0.0017 Score=49.91 Aligned_cols=60 Identities=13% Similarity=0.248 Sum_probs=40.9
Q ss_pred CeEEEEEEcCCCChhHHHHHHHHHHhHHHHHhCCCEEEEEcCCCHHHHHHHHHHcCC---CCceeecC
Q 027527 97 RKAVVAFARHFGCVLCRKRADYLAAKKDVMDASGVALVLIGPGSVEQARTFSEQTKF---KGEVYADP 161 (222)
Q Consensus 97 ~~vvVvF~R~~~Cp~C~~el~~L~~~~~~l~~~gv~lvaIs~~s~~~i~~f~~~~~~---pfpil~Dp 161 (222)
...++++|++.||++|+...+.|.++.++. ..+++..|..+... +.++++++ |.-++.+.
T Consensus 22 ~~~vvv~f~a~wC~~C~~~~~~l~~la~~~--~~i~~~~vd~d~~~---~l~~~~~v~~vPt~~i~~~ 84 (113)
T cd02975 22 PVDLVVFSSKEGCQYCEVTKQLLEELSELS--DKLKLEIYDFDEDK---EKAEKYGVERVPTTIFLQD 84 (113)
T ss_pred CeEEEEEeCCCCCCChHHHHHHHHHHHHhc--CceEEEEEeCCcCH---HHHHHcCCCcCCEEEEEeC
Confidence 445888899999999999888888887665 34777888776443 33444444 43345443
No 114
>TIGR00424 APS_reduc 5'-adenylylsulfate reductase, thioredoxin-independent. This enzyme, involved in the assimilation of inorganic sulfate, is closely related to the thioredoxin-dependent PAPS reductase of Bacteria (CysH) and Saccharomyces cerevisiae. However, it has its own C-terminal thioredoxin-like domain and is not thioredoxin-dependent. Also, it has a substrate preference for 5'-adenylylsulfate (APS) over 3'-phosphoadenylylsulfate (PAPS) so the pathway does not require an APS kinase (CysC) to convert APS to PAPS. Arabidopsis thaliana appears to have three isozymes, all able to complement E. coli CysH mutants (even in backgrounds lacking thioredoxin or APS kinase) but likely localized to different compartments in Arabidopsis.
Probab=97.02 E-value=0.0019 Score=61.64 Aligned_cols=46 Identities=13% Similarity=0.176 Sum_probs=40.5
Q ss_pred CCeEEEEEEcCCCChhHHHHHHHHHHhHHHHHhCCCEEEEEcCCCH
Q 027527 96 DRKAVVAFARHFGCVLCRKRADYLAAKKDVMDASGVALVLIGPGSV 141 (222)
Q Consensus 96 ~~~vvVvF~R~~~Cp~C~~el~~L~~~~~~l~~~gv~lvaIs~~s~ 141 (222)
.++.+||.|++.||++|+...+.+.++.+++...++.++.|..+..
T Consensus 370 ~~k~VLV~FyApWC~~Ck~m~P~~eelA~~~~~~~v~~~kVdvD~~ 415 (463)
T TIGR00424 370 RKEAWLVVLYAPWCPFCQAMEASYLELAEKLAGSGVKVAKFRADGD 415 (463)
T ss_pred CCCeEEEEEECCCChHHHHHHHHHHHHHHHhccCCcEEEEEECCCC
Confidence 4567999999999999999999999999999877889988988753
No 115
>KOG2792 consensus Putative cytochrome C oxidase assembly protein [Energy production and conversion]
Probab=96.96 E-value=0.0033 Score=55.59 Aligned_cols=82 Identities=17% Similarity=0.302 Sum_probs=62.1
Q ss_pred CCCccccCcCCCcEEecCCCCeEeCCCccCCCeEEEEEEcCCCCh-hHHHHHHHHHHhHHHHHhC-CCE--EEEEcCC--
Q 027527 66 SVSEDTKNLLDTVKVYDVNGNAIPISDLWKDRKAVVAFARHFGCV-LCRKRADYLAAKKDVMDAS-GVA--LVLIGPG-- 139 (222)
Q Consensus 66 ~~~~~~g~~apdf~L~D~~G~~v~Lsdl~~~~~vvVvF~R~~~Cp-~C~~el~~L~~~~~~l~~~-gv~--lvaIs~~-- 139 (222)
.....+| -.|+|.|.+|+.++=.||. + +-+|+-|-.+.|| .|-+|+..|.+..+++++. |+. -|.|++|
T Consensus 113 ~gk~~iG---GpF~L~d~~Gk~~te~df~-G-kw~LiYFGFThCPDICPdELeKm~~~Vd~i~~~~~~~~~PlFIsvDPe 187 (280)
T KOG2792|consen 113 AGKPAIG---GPFSLVDHDGKRVTEKDFL-G-KWSLIYFGFTHCPDICPDELEKMSAVVDEIEAKPGLPPVPLFISVDPE 187 (280)
T ss_pred cCCCccC---CceEEEecCCCeecccccc-c-ceEEEEecccCCCCcChHHHHHHHHHHHHHhccCCCCccceEEEeCcc
Confidence 3334455 3799999999999999984 4 4567777889999 6999999999999999754 433 3666665
Q ss_pred --CHHHHHHHHHHcC
Q 027527 140 --SVEQARTFSEQTK 152 (222)
Q Consensus 140 --s~~~i~~f~~~~~ 152 (222)
+++.+++|+++..
T Consensus 188 RD~~~~~~eY~~eF~ 202 (280)
T KOG2792|consen 188 RDSVEVVAEYVSEFH 202 (280)
T ss_pred cCCHHHHHHHHHhcC
Confidence 4577788877644
No 116
>PF13899 Thioredoxin_7: Thioredoxin-like; PDB: 2LST_A 3PH9_A 1UC7_A 2JU5_A 1VRS_D 2FWG_A 2FWF_A 2FWH_A 2FWE_A 3FK8_A ....
Probab=96.96 E-value=0.0056 Score=44.05 Aligned_cols=64 Identities=16% Similarity=0.179 Sum_probs=43.7
Q ss_pred CeEEEEEEcCCCChhHHHHHHHHHHh--HHHHHhCCCEEEEEcCCCHHHHHHHHHHcCCCCceeecC
Q 027527 97 RKAVVAFARHFGCVLCRKRADYLAAK--KDVMDASGVALVLIGPGSVEQARTFSEQTKFKGEVYADP 161 (222)
Q Consensus 97 ~~vvVvF~R~~~Cp~C~~el~~L~~~--~~~l~~~gv~lvaIs~~s~~~i~~f~~~~~~pfpil~Dp 161 (222)
++.|+|.|.+.||+.|+..-..+-.. ..++-..++..+-|..++.+....+.. .++|.-++.||
T Consensus 17 ~kpvlv~f~a~wC~~C~~l~~~~~~~~~v~~~~~~~fv~v~vd~~~~~~~~~~~~-~~~P~~~~ldp 82 (82)
T PF13899_consen 17 GKPVLVDFGADWCPPCKKLEREVFSDPEVQEALNKNFVLVKVDVDDEDPNAQFDR-QGYPTFFFLDP 82 (82)
T ss_dssp TSEEEEEEETTTTHHHHHHHHHTTTSHHHHHHHHHCSEEEEEETTTHHHHHHHHH-CSSSEEEEEET
T ss_pred CCCEEEEEECCCCHhHHHHHHHHcCCHHHHHHHHCCEEEEEEEcCCCChhHHhCC-ccCCEEEEeCC
Confidence 45566666899999999987776443 233234778888888887765444433 57777677775
No 117
>cd02957 Phd_like Phosducin (Phd)-like family; composed of Phd and Phd-like proteins (PhLP), characterized as cytosolic regulators of G protein functions. Phd and PhLPs specifically bind G protein betagamma (Gbg)-subunits with high affinity, resulting in the solubilization of Gbg from the plasma membrane and impeding G protein-mediated signal transduction by inhibiting the formation of a functional G protein trimer (G protein alphabetagamma). Phd also inhibits the GTPase activity of G protein alpha. Phd can be phosphorylated by protein kinase A and G protein-coupled receptor kinase 2, leading to its inactivation. Phd was originally isolated from the retina, where it is highly expressed and has been implicated to play an important role in light adaptation. It is also found in the pineal gland, liver, spleen, striated muscle and the brain. The C-terminal domain of Phd adopts a thioredoxin fold, but it does not contain a CXXC motif. Phd interacts with G protein beta mostly through the N-te
Probab=96.93 E-value=0.0023 Score=48.83 Aligned_cols=50 Identities=14% Similarity=0.079 Sum_probs=39.1
Q ss_pred eEEEEEEcCCCChhHHHHHHHHHHhHHHHHhCCCEEEEEcCCCHHHHHHHHHHcCC
Q 027527 98 KAVVAFARHFGCVLCRKRADYLAAKKDVMDASGVALVLIGPGSVEQARTFSEQTKF 153 (222)
Q Consensus 98 ~vvVvF~R~~~Cp~C~~el~~L~~~~~~l~~~gv~lvaIs~~s~~~i~~f~~~~~~ 153 (222)
+.+|+.|++.||+.|+...+.|.++.+++. ++.++-|..+.. ..++++++
T Consensus 25 ~~vvv~F~a~~c~~C~~l~~~l~~la~~~~--~v~f~~vd~~~~----~l~~~~~i 74 (113)
T cd02957 25 TRVVVHFYEPGFPRCKILDSHLEELAAKYP--ETKFVKINAEKA----FLVNYLDI 74 (113)
T ss_pred CEEEEEEeCCCCCcHHHHHHHHHHHHHHCC--CcEEEEEEchhh----HHHHhcCC
Confidence 678889999999999999999999888764 577777777644 44555555
No 118
>cd02989 Phd_like_TxnDC9 Phosducin (Phd)-like family, Thioredoxin (TRX) domain containing protein 9 (TxnDC9) subfamily; composed of predominantly uncharacterized eukaryotic proteins, containing a TRX-like domain without the redox active CXXC motif. The gene name for the human protein is TxnDC9. The two characterized members are described as Phd-like proteins, PLP1 of Saccharomyces cerevisiae and PhLP3 of Dictyostelium discoideum. Gene disruption experiments show that both PLP1 and PhLP3 are non-essential proteins. Unlike Phd and most Phd-like proteins, members of this group do not contain the Phd N-terminal helical domain which is implicated in binding to the G protein betagamma subunit.
Probab=96.93 E-value=0.0016 Score=50.12 Aligned_cols=72 Identities=8% Similarity=0.053 Sum_probs=47.8
Q ss_pred CeEEEEEEcCCCChhHHHHHHHHHHhHHHHHhCCCEEEEEcCCCHHHHH-HHHHHcCCCCceeecCChHHHHHcCC
Q 027527 97 RKAVVAFARHFGCVLCRKRADYLAAKKDVMDASGVALVLIGPGSVEQAR-TFSEQTKFKGEVYADPNHSSYEALSF 171 (222)
Q Consensus 97 ~~vvVvF~R~~~Cp~C~~el~~L~~~~~~l~~~gv~lvaIs~~s~~~i~-~f~~~~~~pfpil~Dpd~~lyk~lGl 171 (222)
...+|+.|++.||+.|+...+.|.++.+++ .+++++-|..+....+. +| .-..+|--++......+.+..|.
T Consensus 22 ~~~vvV~f~a~~c~~C~~~~p~l~~la~~~--~~i~f~~Vd~~~~~~l~~~~-~v~~vPt~l~fk~G~~v~~~~g~ 94 (113)
T cd02989 22 SERVVCHFYHPEFFRCKIMDKHLEILAKKH--LETKFIKVNAEKAPFLVEKL-NIKVLPTVILFKNGKTVDRIVGF 94 (113)
T ss_pred CCcEEEEEECCCCccHHHHHHHHHHHHHHc--CCCEEEEEEcccCHHHHHHC-CCccCCEEEEEECCEEEEEEECc
Confidence 457888889999999999999999988776 35888888887654332 33 22244533555444444443343
No 119
>PTZ00443 Thioredoxin domain-containing protein; Provisional
Probab=96.88 E-value=0.0024 Score=55.41 Aligned_cols=59 Identities=14% Similarity=0.085 Sum_probs=41.6
Q ss_pred eEEEEEEcCCCChhHHHHHHHHHHhHHHHHhCCCEEEEEcCCCHHHHHHHHHHcCCC-Cc--eeec
Q 027527 98 KAVVAFARHFGCVLCRKRADYLAAKKDVMDASGVALVLIGPGSVEQARTFSEQTKFK-GE--VYAD 160 (222)
Q Consensus 98 ~vvVvF~R~~~Cp~C~~el~~L~~~~~~l~~~gv~lvaIs~~s~~~i~~f~~~~~~p-fp--il~D 160 (222)
..+++.|++.||++|+...+.+.++.++++. .+.+..|..+.. ...++++++. +| ++.+
T Consensus 53 ~~vlV~FyApWC~~Ck~~~P~~e~la~~~~~-~v~~~~VD~~~~---~~l~~~~~I~~~PTl~~f~ 114 (224)
T PTZ00443 53 GPWFVKFYAPWCSHCRKMAPAWERLAKALKG-QVNVADLDATRA---LNLAKRFAIKGYPTLLLFD 114 (224)
T ss_pred CCEEEEEECCCChHHHHHHHHHHHHHHHcCC-CeEEEEecCccc---HHHHHHcCCCcCCEEEEEE
Confidence 4678889999999999999999999888853 366666665543 3445555554 34 4444
No 120
>PRK00293 dipZ thiol:disulfide interchange protein precursor; Provisional
Probab=96.87 E-value=0.0029 Score=61.76 Aligned_cols=67 Identities=12% Similarity=0.152 Sum_probs=46.3
Q ss_pred CeEEEEEEcCCCChhHHHHHHHH---HHhHHHHHhCCCEEEEEcCCCH-HHHHHHHHHcCCC---CceeecCChHH
Q 027527 97 RKAVVAFARHFGCVLCRKRADYL---AAKKDVMDASGVALVLIGPGSV-EQARTFSEQTKFK---GEVYADPNHSS 165 (222)
Q Consensus 97 ~~vvVvF~R~~~Cp~C~~el~~L---~~~~~~l~~~gv~lvaIs~~s~-~~i~~f~~~~~~p---fpil~Dpd~~l 165 (222)
++.|++.|++.||+.|++..+.. .+..++++ ++.++-|..++. ++.+++.+++++. .-++.|++++.
T Consensus 474 gK~VlVdF~A~WC~~Ck~~e~~~~~~~~v~~~l~--~~~~v~vDvt~~~~~~~~l~~~~~v~g~Pt~~~~~~~G~~ 547 (571)
T PRK00293 474 GKPVMLDLYADWCVACKEFEKYTFSDPQVQQALA--DTVLLQADVTANNAEDVALLKHYNVLGLPTILFFDAQGQE 547 (571)
T ss_pred CCcEEEEEECCcCHhHHHHHHHhcCCHHHHHHhc--CCEEEEEECCCCChhhHHHHHHcCCCCCCEEEEECCCCCC
Confidence 46788899999999999865553 34455553 577777777643 4556677777754 44788888764
No 121
>cd02955 SSP411 TRX domain, SSP411 protein family; members of this family are highly conserved proteins present in eukaryotes, bacteria and archaea, about 600-800 amino acids in length, which contain a TRX domain with a redox active CXXC motif. The human/rat protein, called SSP411, is specifically expressed in the testis in an age-dependent manner. The SSP411 mRNA is increased during spermiogenesis and is localized in round and elongated spermatids, suggesting a function in fertility regulation.
Probab=96.86 E-value=0.0038 Score=49.29 Aligned_cols=98 Identities=12% Similarity=0.258 Sum_probs=55.8
Q ss_pred CCCeEEEEEEcCCCChhHHHHHHHH-H--HhHHHHHhCCCEEEEEcCCCH-HHHHHHHH-------HcCCCCceeecCCh
Q 027527 95 KDRKAVVAFARHFGCVLCRKRADYL-A--AKKDVMDASGVALVLIGPGSV-EQARTFSE-------QTKFKGEVYADPNH 163 (222)
Q Consensus 95 ~~~~vvVvF~R~~~Cp~C~~el~~L-~--~~~~~l~~~gv~lvaIs~~s~-~~i~~f~~-------~~~~pfpil~Dpd~ 163 (222)
+.++.|+++|.+.||+.|+..-... . +..+.+ ..+..+|-|..+.. +..+.|.+ ..|+|.-++.|+++
T Consensus 13 ~~~KpVll~f~a~WC~~Ck~me~~~f~~~~V~~~l-~~~fv~VkvD~~~~~~~~~~~~~~~~~~~~~~G~Pt~vfl~~~G 91 (124)
T cd02955 13 REDKPIFLSIGYSTCHWCHVMEHESFEDEEVAAIL-NENFVPIKVDREERPDVDKIYMNAAQAMTGQGGWPLNVFLTPDL 91 (124)
T ss_pred HcCCeEEEEEccCCCHhHHHHHHHccCCHHHHHHH-hCCEEEEEEeCCcCcHHHHHHHHHHHHhcCCCCCCEEEEECCCC
Confidence 3456678888999999999765532 2 223333 34566666766543 33333332 34788889999997
Q ss_pred HHHHHcCCccccceeeccc--hhHHHHHHHHHHHHhhhc
Q 027527 164 SSYEALSFVSGVLVTFTPK--AGLKIIQSYMEGYRQDWK 200 (222)
Q Consensus 164 ~lyk~lGl~~~~~~~~~P~--a~~~~l~~~~~g~r~~~k 200 (222)
+.....+ .+.|. .....+..+++..|..|.
T Consensus 92 ~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~ 123 (124)
T cd02955 92 KPFFGGT-------YFPPEDRYGRPGFKTVLEKIRELWR 123 (124)
T ss_pred CEEeeee-------ecCCCCcCCCcCHHHHHHHHHHHHh
Confidence 7543332 22221 111234555667776664
No 122
>TIGR01130 ER_PDI_fam protein disulfide isomerases, eukaryotic. Members of this family have at least two protein-disulfide domains, each similar to thioredoxin but with the redox-active disulfide in the motif PWCGHCK, and an ER retention signal at the extreme C-terminus (KDEL, HDEL, and similar motifs).
Probab=96.84 E-value=0.0011 Score=61.36 Aligned_cols=59 Identities=14% Similarity=0.176 Sum_probs=45.7
Q ss_pred ccCCCeEEEEEEcCCCChhHHHHHHHHHHhHHHHHhCC--CEEEEEcCCCHHHHHHHHHHcCCC
Q 027527 93 LWKDRKAVVAFARHFGCVLCRKRADYLAAKKDVMDASG--VALVLIGPGSVEQARTFSEQTKFK 154 (222)
Q Consensus 93 l~~~~~vvVvF~R~~~Cp~C~~el~~L~~~~~~l~~~g--v~lvaIs~~s~~~i~~f~~~~~~p 154 (222)
+.+..+.++++|++.||+.|++..+.+.+..+++++.+ +.++.|.++... +.++++++.
T Consensus 14 ~i~~~~~~~v~f~a~wC~~c~~~~~~~~~~a~~~~~~~~~v~~~~vd~~~~~---~l~~~~~i~ 74 (462)
T TIGR01130 14 FIKSHEFVLVEFYAPWCGHCKSLAPEYEKAADELKKKGPPIKLAKVDATEEK---DLAQKYGVS 74 (462)
T ss_pred HHhcCCCEEEEEECCCCHHHHhhhHHHHHHHHHHhhcCCceEEEEEECCCcH---HHHHhCCCc
Confidence 34456678999999999999999999999998887766 888888887553 344555554
No 123
>TIGR00411 redox_disulf_1 small redox-active disulfide protein 1. This protein is homologous to a family of proteins that includes thioredoxins, glutaredoxins, protein-disulfide isomerases, and others, some of which have several such domains. The sequence of this protein at the redox-active disufide site, CPYC, matches glutaredoxins rather than thioredoxins, although its overall sequence seems closer to thioredoxins. It is suggested to be a ribonucleotide-reducing system component distinct from thioredoxin or glutaredoxin.
Probab=96.80 E-value=0.0028 Score=44.77 Aligned_cols=42 Identities=12% Similarity=0.135 Sum_probs=33.4
Q ss_pred EEEEEEcCCCChhHHHHHHHHHHhHHHHHhCCCEEEEEcCCCH
Q 027527 99 AVVAFARHFGCVLCRKRADYLAAKKDVMDASGVALVLIGPGSV 141 (222)
Q Consensus 99 vvVvF~R~~~Cp~C~~el~~L~~~~~~l~~~gv~lvaIs~~s~ 141 (222)
+.|..|+..||+.|++..+.|.++..++.. .+.++-|..+..
T Consensus 1 ~~v~~f~~~~C~~C~~~~~~l~~l~~~~~~-~~~~~~vd~~~~ 42 (82)
T TIGR00411 1 VKIELFTSPTCPYCPAAKRVVEEVAKEMGD-AVEVEYINVMEN 42 (82)
T ss_pred CEEEEEECCCCcchHHHHHHHHHHHHHhcC-ceEEEEEeCccC
Confidence 357788899999999999999999887743 377788877543
No 124
>PF13728 TraF: F plasmid transfer operon protein
Probab=96.80 E-value=0.0058 Score=52.60 Aligned_cols=74 Identities=15% Similarity=0.241 Sum_probs=52.6
Q ss_pred CCCccCCCeEEEEEEcCCCChhHHHHHHHHHHhHHHHHhCCCEEEEEcCCCHHHHHHHHHHcCCC-CceeecCChHHHHH
Q 027527 90 ISDLWKDRKAVVAFARHFGCVLCRKRADYLAAKKDVMDASGVALVLIGPGSVEQARTFSEQTKFK-GEVYADPNHSSYEA 168 (222)
Q Consensus 90 Lsdl~~~~~vvVvF~R~~~Cp~C~~el~~L~~~~~~l~~~gv~lvaIs~~s~~~i~~f~~~~~~p-fpil~Dpd~~lyk~ 168 (222)
|.++ .++..+++||+. .|++|+..++-|+.+.++. |+.|++|+.|.. +++ ||-.. ++..+.+.
T Consensus 115 l~~l-a~~~gL~~F~~~-~C~~C~~~~pil~~~~~~y---g~~v~~vs~DG~----------~~~~fp~~~-~~~g~~~~ 178 (215)
T PF13728_consen 115 LKQL-AQKYGLFFFYRS-DCPYCQQQAPILQQFADKY---GFSVIPVSLDGR----------PIPSFPNPR-PDPGQAKR 178 (215)
T ss_pred HHHH-hhCeEEEEEEcC-CCchhHHHHHHHHHHHHHh---CCEEEEEecCCC----------CCcCCCCCC-CCHHHHHH
Confidence 4444 245566666666 8999999999999998865 999999999842 222 32221 26778888
Q ss_pred cCCccccceee
Q 027527 169 LSFVSGVLVTF 179 (222)
Q Consensus 169 lGl~~~~~~~~ 179 (222)
||+...+..++
T Consensus 179 l~v~~~Pal~L 189 (215)
T PF13728_consen 179 LGVKVTPALFL 189 (215)
T ss_pred cCCCcCCEEEE
Confidence 99987777655
No 125
>cd03065 PDI_b_Calsequestrin_N PDIb family, Calsequestrin subfamily, N-terminal TRX-fold domain; Calsequestrin is the major calcium storage protein in the sarcoplasmic reticulum (SR) of skeletal and cardiac muscle. It stores calcium ions in sufficient quantities (up to 20 mM) to allow repetitive contractions and is essential to maintain movement, respiration and heart beat. A missense mutation in human cardiac calsequestrin is associated with catecholamine-induced polymorphic ventricular tachycardia (CPVT), a rare disease characterized by seizures or sudden death in response to physiologic or emotional stress. Calsequestrin is a highly acidic protein with up to 50 calcium binding sites formed simply by the clustering of two or more acidic residues. The monomer contains three redox inactive TRX-fold domains. Calsequestrin is condensed as a linear polymer in the SR lumen and is membrane-anchored through binding with intra-membrane proteins triadin, junctin and ryanodine receptor (RyR) Ca2
Probab=96.61 E-value=0.0042 Score=48.81 Aligned_cols=46 Identities=4% Similarity=0.072 Sum_probs=34.3
Q ss_pred CCeEEEEEEcCCCChh--HHH--HHHHHHHhHHH-HHhCCCEEEEEcCCCH
Q 027527 96 DRKAVVAFARHFGCVL--CRK--RADYLAAKKDV-MDASGVALVLIGPGSV 141 (222)
Q Consensus 96 ~~~vvVvF~R~~~Cp~--C~~--el~~L~~~~~~-l~~~gv~lvaIs~~s~ 141 (222)
.+.+||+||+..||++ |+. ..+-|.+...+ +++.++.++-|..+..
T Consensus 26 ~~~~vvv~f~a~wc~p~~Ck~~~~~p~~~~~aa~~l~~~~v~~~kVD~d~~ 76 (120)
T cd03065 26 YDVLCLLYHEPVESDKEAQKQFQMEELVLELAAQVLEDKGIGFGLVDSKKD 76 (120)
T ss_pred CCceEEEEECCCcCChhhChhhcchhhHHHHHHHHhhcCCCEEEEEeCCCC
Confidence 4568999999999988 994 44445555444 5667899998988854
No 126
>PTZ00102 disulphide isomerase; Provisional
Probab=96.58 E-value=0.003 Score=59.15 Aligned_cols=82 Identities=16% Similarity=0.226 Sum_probs=51.4
Q ss_pred EecCCCCeEeCCCc-cCCCeEEEEEEcCCCChhHHHHHHHHHHhHHHHHhCC-CEEEEEcCCCHHHH-HHHHHHcCCCCc
Q 027527 80 VYDVNGNAIPISDL-WKDRKAVVAFARHFGCVLCRKRADYLAAKKDVMDASG-VALVLIGPGSVEQA-RTFSEQTKFKGE 156 (222)
Q Consensus 80 L~D~~G~~v~Lsdl-~~~~~vvVvF~R~~~Cp~C~~el~~L~~~~~~l~~~g-v~lvaIs~~s~~~i-~~f~~~~~~pfp 156 (222)
+....|+.+. +. .+.++.++++|++.||+.|++..+.+.++..++++.+ +.+..|..+..+.. +.|. -.++|--
T Consensus 359 v~~l~~~~f~--~~v~~~~k~vlv~f~a~wC~~C~~~~p~~~~~a~~~~~~~~v~~~~id~~~~~~~~~~~~-v~~~Pt~ 435 (477)
T PTZ00102 359 VKVVVGNTFE--EIVFKSDKDVLLEIYAPWCGHCKNLEPVYNELGEKYKDNDSIIVAKMNGTANETPLEEFS-WSAFPTI 435 (477)
T ss_pred eEEecccchH--HHHhcCCCCEEEEEECCCCHHHHHHHHHHHHHHHHhccCCcEEEEEEECCCCccchhcCC-CcccCeE
Confidence 4444455433 22 2345678889999999999999999999988886643 55666666543332 2332 2245544
Q ss_pred eeecCChH
Q 027527 157 VYADPNHS 164 (222)
Q Consensus 157 il~Dpd~~ 164 (222)
++.+.+.+
T Consensus 436 ~~~~~~~~ 443 (477)
T PTZ00102 436 LFVKAGER 443 (477)
T ss_pred EEEECCCc
Confidence 56665554
No 127
>PLN02309 5'-adenylylsulfate reductase
Probab=96.58 E-value=0.0048 Score=58.81 Aligned_cols=44 Identities=11% Similarity=0.196 Sum_probs=39.6
Q ss_pred CCeEEEEEEcCCCChhHHHHHHHHHHhHHHHHhCCCEEEEEcCC
Q 027527 96 DRKAVVAFARHFGCVLCRKRADYLAAKKDVMDASGVALVLIGPG 139 (222)
Q Consensus 96 ~~~vvVvF~R~~~Cp~C~~el~~L~~~~~~l~~~gv~lvaIs~~ 139 (222)
.++.+||+|.+.||++|+...+.+.++.+++...++.+..|..+
T Consensus 364 ~~k~vlV~FyApWC~~Cq~m~p~~e~LA~~~~~~~V~f~kVD~d 407 (457)
T PLN02309 364 RKEPWLVVLYAPWCPFCQAMEASYEELAEKLAGSGVKVAKFRAD 407 (457)
T ss_pred CCCeEEEEEECCCChHHHHHHHHHHHHHHHhccCCeEEEEEECC
Confidence 35678999999999999999999999999998778999999888
No 128
>KOG0910 consensus Thioredoxin-like protein [Posttranslational modification, protein turnover, chaperones]
Probab=96.50 E-value=0.0042 Score=50.76 Aligned_cols=44 Identities=14% Similarity=0.053 Sum_probs=36.7
Q ss_pred CeEEEEEEcCCCChhHHHHHHHHHHhHHHHHhCCCEEEEEcCCCH
Q 027527 97 RKAVVAFARHFGCVLCRKRADYLAAKKDVMDASGVALVLIGPGSV 141 (222)
Q Consensus 97 ~~vvVvF~R~~~Cp~C~~el~~L~~~~~~l~~~gv~lvaIs~~s~ 141 (222)
...|||-|++.||.+|+--.+.|+++..++ +.-+++.-|..|+.
T Consensus 61 ~~PVlVdF~A~WCgPCk~l~P~l~~~~~~~-~g~~k~~kvdtD~~ 104 (150)
T KOG0910|consen 61 DVPVLVDFHAEWCGPCKMLGPILEELVSEY-AGKFKLYKVDTDEH 104 (150)
T ss_pred CCCEEEEEecCcCccHhHhhHHHHHHHHhh-cCeEEEEEEccccc
Confidence 456788889999999999999999999988 55578888877754
No 129
>cd02982 PDI_b'_family Protein Disulfide Isomerase (PDIb') family, redox inactive TRX-like domain b'; composed of eukaryotic proteins involved in oxidative protein folding in the endoplasmic reticulum (ER) by acting as catalysts and folding assistants. Members of this family include PDI, calsequestrin and other PDI-related proteins like ERp72, ERp57 (or ERp60), ERp44, P5 and PDIR. PDI, ERp57, ERp72, P5 and PDIR are all oxidases, catalyzing the formation of disulfide bonds of newly synthesized polypeptides in the ER. They also exhibit reductase activity in acting as isomerases to correct any non-native disulfide bonds, as well as chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. These proteins contain multiple copies of a redox active TRX (a) domain containing a CXXC motif, and one or more redox inactive TRX-like (b) domains. The molecular structure of PDI is abb'a'. Also included in this family is the PDI-related protein ERp27, w
Probab=96.43 E-value=0.005 Score=45.34 Aligned_cols=53 Identities=8% Similarity=0.061 Sum_probs=39.1
Q ss_pred eEEEEEEcCCCChhHHHHHHHHHHhHHHHHhCCCEEEEEcCCCHHHHHHHHHHcCCC
Q 027527 98 KAVVAFARHFGCVLCRKRADYLAAKKDVMDASGVALVLIGPGSVEQARTFSEQTKFK 154 (222)
Q Consensus 98 ~vvVvF~R~~~Cp~C~~el~~L~~~~~~l~~~gv~lvaIs~~s~~~i~~f~~~~~~p 154 (222)
..++++|...||+.|....+.|.++.++++.. +.++.|..+.. ..+++.+++.
T Consensus 13 ~~~~~~f~~~~~~~~~~~~~~~~~vA~~~~~~-v~f~~vd~~~~---~~~~~~~~i~ 65 (103)
T cd02982 13 KPLLVLFYNKDDSESEELRERFKEVAKKFKGK-LLFVVVDADDF---GRHLEYFGLK 65 (103)
T ss_pred CCEEEEEEcCChhhHHHHHHHHHHHHHHhCCe-EEEEEEchHhh---HHHHHHcCCC
Confidence 45677778999999999999999999999733 66777666653 3345555553
No 130
>PTZ00102 disulphide isomerase; Provisional
Probab=96.42 E-value=0.0041 Score=58.23 Aligned_cols=60 Identities=8% Similarity=0.147 Sum_probs=43.5
Q ss_pred CccCCCeEEEEEEcCCCChhHHHHHHHHHHhHHHHHhCC--CEEEEEcCCCHHHHHHHHHHcCCC
Q 027527 92 DLWKDRKAVVAFARHFGCVLCRKRADYLAAKKDVMDASG--VALVLIGPGSVEQARTFSEQTKFK 154 (222)
Q Consensus 92 dl~~~~~vvVvF~R~~~Cp~C~~el~~L~~~~~~l~~~g--v~lvaIs~~s~~~i~~f~~~~~~p 154 (222)
++.+..+.++|+|++.||+.|++..+.+.+...++.+.+ +.+.-|.++... +.++++++.
T Consensus 44 ~~i~~~~~~lv~f~a~wC~~Ck~~~p~~~~~a~~~~~~~~~i~~~~vd~~~~~---~l~~~~~i~ 105 (477)
T PTZ00102 44 KFITENEIVLVKFYAPWCGHCKRLAPEYKKAAKMLKEKKSEIVLASVDATEEM---ELAQEFGVR 105 (477)
T ss_pred HHHhcCCcEEEEEECCCCHHHHHhhHHHHHHHHHHHhcCCcEEEEEEECCCCH---HHHHhcCCC
Confidence 334456678999999999999999999999888887554 667777666433 344455544
No 131
>cd02965 HyaE HyaE family; HyaE is also called HupG and HoxO. They are proteins serving a critical role in the assembly of multimeric [NiFe] hydrogenases, the enzymes that catalyze the oxidation of molecular hydrogen to enable microorganisms to utilize hydrogen as the sole energy source. The E. coli HyaE protein is a chaperone that specifically interacts with the twin-arginine translocation (Tat) signal peptide of the [NiFe] hydrogenase-1 beta subunit precursor. Tat signal peptides target precursor proteins to the Tat protein export system, which facilitates the transport of fully folded proteins across the inner membrane. HyaE may be involved in regulating the traffic of [NiFe] hydrogenase-1 on the Tat transport pathway.
Probab=96.41 E-value=0.0044 Score=48.25 Aligned_cols=45 Identities=9% Similarity=-0.032 Sum_probs=33.5
Q ss_pred CeEEEEEEcCCC--ChhHHHHHHHHHHhHHHHHhCCCEEEEEcCCCHH
Q 027527 97 RKAVVAFARHFG--CVLCRKRADYLAAKKDVMDASGVALVLIGPGSVE 142 (222)
Q Consensus 97 ~~vvVvF~R~~~--Cp~C~~el~~L~~~~~~l~~~gv~lvaIs~~s~~ 142 (222)
...+|++|.+.| ||.|++-.+.|.++.+++.+. +.++-|..++..
T Consensus 27 ~~~~v~~f~~~~~~cp~c~~i~P~leela~e~~~~-v~f~kVdid~~~ 73 (111)
T cd02965 27 GGDLVLLLAGDPVRFPEVLDVAVVLPELLKAFPGR-FRAAVVGRADEQ 73 (111)
T ss_pred CCCEEEEecCCcccCcchhhhHhHHHHHHHHCCCc-EEEEEEECCCCH
Confidence 345677777775 999999999999998887543 566666666543
No 132
>TIGR02196 GlrX_YruB Glutaredoxin-like protein, YruB-family. This glutaredoxin-like protein family contains the conserved CxxC motif and includes the Clostridium pasteurianum protein YruB which has been cloned from a rubredoxin operon. Somewhat related to NrdH, it is unknown whether this protein actually interacts with glutathione/glutathione reducatase, or, like NrdH, some other reductant system.
Probab=96.37 E-value=0.019 Score=38.98 Aligned_cols=54 Identities=19% Similarity=0.194 Sum_probs=38.9
Q ss_pred EEEEcCCCChhHHHHHHHHHHhHHHHHhCCCEEEEEcCCC-HHHHHHHHHHcCCC-CceeecC
Q 027527 101 VAFARHFGCVLCRKRADYLAAKKDVMDASGVALVLIGPGS-VEQARTFSEQTKFK-GEVYADP 161 (222)
Q Consensus 101 VvF~R~~~Cp~C~~el~~L~~~~~~l~~~gv~lvaIs~~s-~~~i~~f~~~~~~p-fpil~Dp 161 (222)
|.+|...|||+|++....|. +.|+.+..+..++ .+..+++.+.++.. .|.+.+.
T Consensus 2 i~lf~~~~C~~C~~~~~~l~-------~~~i~~~~vdi~~~~~~~~~~~~~~~~~~vP~~~~~ 57 (74)
T TIGR02196 2 VKVYTTPWCPPCKKAKEYLT-------SKGIAFEEIDVEKDSAAREEVLKVLGQRGVPVIVIG 57 (74)
T ss_pred EEEEcCCCChhHHHHHHHHH-------HCCCeEEEEeccCCHHHHHHHHHHhCCCcccEEEEC
Confidence 57889999999998655553 4678888887764 34566788887766 6766653
No 133
>cd02987 Phd_like_Phd Phosducin (Phd)-like family, Phd subfamily; Phd is a cytosolic regulator of G protein functions. It specifically binds G protein betagamma (Gbg)-subunits with high affinity, resulting in the solubilization of Gbg from the plasma membrane. This impedes the formation of a functional G protein trimer (G protein alphabetagamma), thereby inhibiting G protein-mediated signal transduction. Phd also inhibits the GTPase activity of G protein alpha. Phd can be phosphorylated by protein kinase A and G protein-coupled receptor kinase 2, leading to its inactivation. Phd was originally isolated from the retina, where it is highly expressed and has been implicated to play an important role in light adaptation. It is also found in the pineal gland, liver, spleen, striated muscle and the brain. The C-terminal domain of Phd adopts a thioredoxin fold, but it does not contain a CXXC motif. Phd interacts with G protein beta mostly through the N-terminal helical domain.
Probab=95.99 E-value=0.017 Score=47.99 Aligned_cols=42 Identities=17% Similarity=0.108 Sum_probs=35.2
Q ss_pred eEEEEEEcCCCChhHHHHHHHHHHhHHHHHhCCCEEEEEcCCCH
Q 027527 98 KAVVAFARHFGCVLCRKRADYLAAKKDVMDASGVALVLIGPGSV 141 (222)
Q Consensus 98 ~vvVvF~R~~~Cp~C~~el~~L~~~~~~l~~~gv~lvaIs~~s~ 141 (222)
..|||.|++.||++|+.-.+.|.++..++. +++++-|..+..
T Consensus 84 ~~VVV~Fya~wc~~Ck~m~~~l~~LA~~~~--~vkF~kVd~d~~ 125 (175)
T cd02987 84 TTVVVHIYEPGIPGCAALNSSLLCLAAEYP--AVKFCKIRASAT 125 (175)
T ss_pred cEEEEEEECCCCchHHHHHHHHHHHHHHCC--CeEEEEEeccch
Confidence 378889999999999998888888888763 588888888754
No 134
>TIGR02739 TraF type-F conjugative transfer system pilin assembly protein TraF. This protein is part of a large group of proteins involved in conjugative transfer of plasmid DNA, specifically the F-type system. This protein has been predicted to contain a thioredoxin fold and has been shown to be localized to the periplasm. Unlike the related protein TrbB (TIGR02738), TraF does not contain a conserved pair of cysteines and has been shown not to function as a thiol disulfide isomerase by complementation of an Ecoli DsbA defect. The protein is believed to be involved in pilin assembly. Even more closely related than TrbB is a clade of genes (TIGR02740) which do contain the CXXC motif, but it is unclear whether these genes are involved in type-F conjugation systems per se.
Probab=95.90 E-value=0.025 Score=50.07 Aligned_cols=69 Identities=12% Similarity=0.032 Sum_probs=49.5
Q ss_pred CCeEEEEEEcCCCChhHHHHHHHHHHhHHHHHhCCCEEEEEcCCCHHHHHHHHHHcCCC-CceeecCChHHHHHcCCccc
Q 027527 96 DRKAVVAFARHFGCVLCRKRADYLAAKKDVMDASGVALVLIGPGSVEQARTFSEQTKFK-GEVYADPNHSSYEALSFVSG 174 (222)
Q Consensus 96 ~~~vvVvF~R~~~Cp~C~~el~~L~~~~~~l~~~gv~lvaIs~~s~~~i~~f~~~~~~p-fpil~Dpd~~lyk~lGl~~~ 174 (222)
++..+++||+ ..||+|++.++-|+.+.++ .|+.|++|+.|.. ++| ||-.. +|....+.||+...
T Consensus 150 ~~~gL~fFy~-~~C~~C~~~apil~~fa~~---ygi~v~~VS~DG~----------~~p~fp~~~-~d~gqa~~l~v~~~ 214 (256)
T TIGR02739 150 QSYGLFFFYR-GKSPISQKMAPVIQAFAKE---YGISVIPISVDGT----------LIPGLPNSR-SDSGQAQHLGVKYF 214 (256)
T ss_pred hceeEEEEEC-CCCchhHHHHHHHHHHHHH---hCCeEEEEecCCC----------CCCCCCCcc-CChHHHHhcCCccC
Confidence 3466777777 7799999999999988874 5899999999843 222 33222 35666777888777
Q ss_pred cceee
Q 027527 175 VLVTF 179 (222)
Q Consensus 175 ~~~~~ 179 (222)
+..++
T Consensus 215 Pal~L 219 (256)
T TIGR02739 215 PALYL 219 (256)
T ss_pred ceEEE
Confidence 66555
No 135
>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=95.78 E-value=0.021 Score=51.47 Aligned_cols=47 Identities=11% Similarity=0.019 Sum_probs=35.9
Q ss_pred CeEEEEEEcCCCChhHHHHHHHHHHhHHHHHhCCCEEEEEcCCCHHHH
Q 027527 97 RKAVVAFARHFGCVLCRKRADYLAAKKDVMDASGVALVLIGPGSVEQA 144 (222)
Q Consensus 97 ~~vvVvF~R~~~Cp~C~~el~~L~~~~~~l~~~gv~lvaIs~~s~~~i 144 (222)
+..|||.||+.||++|+.-.+.|.++..+. ...+.+.-|.+|....+
T Consensus 43 ~~PVlV~fWap~~~~c~qL~p~Lekla~~~-~G~f~LakvN~D~~p~v 89 (304)
T COG3118 43 EVPVLVDFWAPWCGPCKQLTPTLEKLAAEY-KGKFKLAKVNCDAEPMV 89 (304)
T ss_pred CCCeEEEecCCCCchHHHHHHHHHHHHHHh-CCceEEEEecCCcchhH
Confidence 346888999999999999999999998876 33366666777654333
No 136
>PF14595 Thioredoxin_9: Thioredoxin; PDB: 1Z6N_A.
Probab=95.57 E-value=0.0053 Score=48.76 Aligned_cols=67 Identities=10% Similarity=0.141 Sum_probs=42.0
Q ss_pred CCeEEEEEEcCCCChhHHHHHHHHHHhHHHHHhCCCEEEEEcCCC-HHHHHHHHHHcC--CCCceeecCChH
Q 027527 96 DRKAVVAFARHFGCVLCRKRADYLAAKKDVMDASGVALVLIGPGS-VEQARTFSEQTK--FKGEVYADPNHS 164 (222)
Q Consensus 96 ~~~vvVvF~R~~~Cp~C~~el~~L~~~~~~l~~~gv~lvaIs~~s-~~~i~~f~~~~~--~pfpil~Dpd~~ 164 (222)
.++.-++.+-..|||.|+..++.|.+..+.- .++++-.|..|. .+...+|....+ +|-=|+.|.+.+
T Consensus 40 ~~~~~ilvi~e~WCgD~~~~vP~l~kiae~~--p~i~~~~i~rd~~~el~~~~lt~g~~~IP~~I~~d~~~~ 109 (129)
T PF14595_consen 40 QKPYNILVITETWCGDCARNVPVLAKIAEAN--PNIEVRIILRDENKELMDQYLTNGGRSIPTFIFLDKDGK 109 (129)
T ss_dssp -S-EEEEEE--TT-HHHHHHHHHHHHHHHH---TTEEEEEE-HHHHHHHTTTTTT-SS--SSEEEEE-TT--
T ss_pred CCCcEEEEEECCCchhHHHHHHHHHHHHHhC--CCCeEEEEEecCChhHHHHHHhCCCeecCEEEEEcCCCC
Confidence 3556777778999999999999999998863 378888888874 466677876333 443477777643
No 137
>TIGR02200 GlrX_actino Glutaredoxin-like protein. This family of glutaredoxin-like proteins is limited to the Actinobacteria and contains the conserved CxxC motif.
Probab=95.52 E-value=0.047 Score=37.74 Aligned_cols=41 Identities=17% Similarity=0.121 Sum_probs=26.2
Q ss_pred EEEEcCCCChhHHHHHHHHHHhHHHHHhCCCEEEEEcCCCHHHHHHHH
Q 027527 101 VAFARHFGCVLCRKRADYLAAKKDVMDASGVALVLIGPGSVEQARTFS 148 (222)
Q Consensus 101 VvF~R~~~Cp~C~~el~~L~~~~~~l~~~gv~lvaIs~~s~~~i~~f~ 148 (222)
|.+|.+.|||+|++....|. +.|+..-.|..+......++.
T Consensus 2 v~ly~~~~C~~C~~~~~~L~-------~~~~~~~~idi~~~~~~~~~~ 42 (77)
T TIGR02200 2 ITVYGTTWCGYCAQLMRTLD-------KLGAAYEWVDIEEDEGAADRV 42 (77)
T ss_pred EEEEECCCChhHHHHHHHHH-------HcCCceEEEeCcCCHhHHHHH
Confidence 56788999999998666554 445555556665444444443
No 138
>TIGR00412 redox_disulf_2 small redox-active disulfide protein 2. This small protein is found in three archaeal species so far (Methanococcus jannaschii, Archeoglobus fulgidus, and Methanobacterium thermoautotrophicum) as well as in Anabaena PCC7120. It is homologous to thioredoxins, glutaredoxins, and protein disulfide isomerases, and shares with them a redox-active disulfide. The redox active disulfide region CXXC motif resembles neither thioredoxin nor glutaredoxin. A closely related protein found in the same three Archaea, described by redox_disulf_1, has a glutaredoxin-like CP[YH]C sequence; it has been characterized in functional assays as redox-active but unlikely to be a thioredoxin or glutaredoxin.
Probab=95.50 E-value=0.035 Score=39.60 Aligned_cols=42 Identities=10% Similarity=0.175 Sum_probs=29.8
Q ss_pred EEEcCCCChhHHHHHHHHHHhHHHHHhCCCEEEEEcCCCHHHHHH
Q 027527 102 AFARHFGCVLCRKRADYLAAKKDVMDASGVALVLIGPGSVEQART 146 (222)
Q Consensus 102 vF~R~~~Cp~C~~el~~L~~~~~~l~~~gv~lvaIs~~s~~~i~~ 146 (222)
|.|.+.|||.|..-.+.+.++.+++ |.++-.+-.++.+++.+
T Consensus 3 i~~~a~~C~~C~~~~~~~~~~~~e~---~~~~~~~~v~~~~~a~~ 44 (76)
T TIGR00412 3 IQIYGTGCANCQMTEKNVKKAVEEL---GIDAEFEKVTDMNEILE 44 (76)
T ss_pred EEEECCCCcCHHHHHHHHHHHHHHc---CCCeEEEEeCCHHHHHH
Confidence 4456799999999999888888865 34445566666665443
No 139
>TIGR01130 ER_PDI_fam protein disulfide isomerases, eukaryotic. Members of this family have at least two protein-disulfide domains, each similar to thioredoxin but with the redox-active disulfide in the motif PWCGHCK, and an ER retention signal at the extreme C-terminus (KDEL, HDEL, and similar motifs).
Probab=95.47 E-value=0.02 Score=52.89 Aligned_cols=47 Identities=13% Similarity=0.155 Sum_probs=39.5
Q ss_pred CCeEEEEEEcCCCChhHHHHHHHHHHhHHHHHhC--CCEEEEEcCCCHH
Q 027527 96 DRKAVVAFARHFGCVLCRKRADYLAAKKDVMDAS--GVALVLIGPGSVE 142 (222)
Q Consensus 96 ~~~vvVvF~R~~~Cp~C~~el~~L~~~~~~l~~~--gv~lvaIs~~s~~ 142 (222)
.++.+||+|++.||+.|+...+.+.++.+++... ++.+..|.++..+
T Consensus 363 ~~~~vlv~f~a~wC~~C~~~~p~~~~~~~~~~~~~~~i~~~~id~~~n~ 411 (462)
T TIGR01130 363 ETKDVLVEFYAPWCGHCKNLAPIYEELAEKYKDAESDVVIAKMDATAND 411 (462)
T ss_pred CCCeEEEEEECCCCHhHHHHHHHHHHHHHHhhcCCCcEEEEEEECCCCc
Confidence 3567899999999999999999999999998762 6888888887543
No 140
>KOG0190 consensus Protein disulfide isomerase (prolyl 4-hydroxylase beta subunit) [Posttranslational modification, protein turnover, chaperones]
Probab=95.47 E-value=0.015 Score=55.94 Aligned_cols=64 Identities=9% Similarity=0.091 Sum_probs=49.8
Q ss_pred CCCccCCCeEEEEEEcCCCChhHHHHHHHHHHhHHHHHhC--CCEEEEEcCCCHHHHHHHHHHcCCC-Cc
Q 027527 90 ISDLWKDRKAVVAFARHFGCVLCRKRADYLAAKKDVMDAS--GVALVLIGPGSVEQARTFSEQTKFK-GE 156 (222)
Q Consensus 90 Lsdl~~~~~vvVvF~R~~~Cp~C~~el~~L~~~~~~l~~~--gv~lvaIs~~s~~~i~~f~~~~~~p-fp 156 (222)
|.++..+...++|-|-+.||..|.+.++++++....+.+. .+.+.=|.+.. . ..++.+++++ ||
T Consensus 35 f~~~i~~~~~vlVeFYAPWCghck~LaPey~kAA~~Lke~~s~i~LakVDat~--~-~~~~~~y~v~gyP 101 (493)
T KOG0190|consen 35 FKETINGHEFVLVEFYAPWCGHCKALAPEYEKAATELKEEGSPVKLAKVDATE--E-SDLASKYEVRGYP 101 (493)
T ss_pred HHHHhccCceEEEEEEchhhhhhhhhCcHHHHHHHHhhccCCCceeEEeecch--h-hhhHhhhcCCCCC
Confidence 4555556677888889999999999999999999999887 55555555443 3 7788888877 55
No 141
>cd02973 TRX_GRX_like Thioredoxin (TRX)-Glutaredoxin (GRX)-like family; composed of archaeal and bacterial proteins that show similarity to both TRX and GRX, including the C-terminal TRX-fold subdomain of Pyrococcus furiosus protein disulfide oxidoreductase (PfPDO). All members contain a redox-active CXXC motif and may function as PDOs. The archaeal proteins Mj0307 and Mt807 show structures more similar to GRX, but activities more similar to TRX. Some members of the family are similar to PfPDO in that they contain a second CXXC motif located in a second TRX-fold subdomain at the N-terminus; the superimposable N- and C-terminal TRX subdomains form a compact structure. PfPDO is postulated to be the archaeal counterpart of bacterial DsbA and eukaryotic protein disulfide isomerase (PDI). The C-terminal CXXC motif of PfPDO is required for its oxidase, reductase and isomerase activities. Also included in the family is the C-terminal TRX-fold subdomain of the N-terminal domain (NTD) of bacteri
Probab=95.39 E-value=0.036 Score=37.82 Aligned_cols=39 Identities=8% Similarity=0.167 Sum_probs=28.2
Q ss_pred EEEEcCCCChhHHHHHHHHHHhHHHHHhCCCEEEEEcCCCH
Q 027527 101 VAFARHFGCVLCRKRADYLAAKKDVMDASGVALVLIGPGSV 141 (222)
Q Consensus 101 VvF~R~~~Cp~C~~el~~L~~~~~~l~~~gv~lvaIs~~s~ 141 (222)
|..|...|||+|.+-.+.|.++.++ ..++++.-|..++.
T Consensus 3 v~~f~~~~C~~C~~~~~~l~~l~~~--~~~i~~~~id~~~~ 41 (67)
T cd02973 3 IEVFVSPTCPYCPDAVQAANRIAAL--NPNISAEMIDAAEF 41 (67)
T ss_pred EEEEECCCCCCcHHHHHHHHHHHHh--CCceEEEEEEcccC
Confidence 5677889999999888877777543 34577777765543
No 142
>PF04592 SelP_N: Selenoprotein P, N terminal region; InterPro: IPR007671 SelP is the only known eukaryotic selenoprotein that contains multiple selenocysteine (Sec) residues, and accounts for more than 50% of the selenium content of rat and human plasma []. It is thought to be glycosylated []. SelP may have antioxidant properties. It can attach to epithelial cells, and may protect vascular endothelial cells against peroxynitrite toxicity []. The high selenium content of SelP suggests that it may be involved in selenium intercellular transport or storage []. The promoter structure of bovine SelP suggests that it may be involved in countering heavy metal intoxication, and may also have a developmental function []. The N-terminal region of SelP can exist independently of the C-terminal region. Zebrafish selenoprotein Pb (Q98SV0 from SWISSPROT) lacks the C-terminal Sec-rich region, and a protein encoded by the rat SelP gene and lacking this region has also been reported []. The N-terminal region contains a conserved SecxxCys motif, which is similar to the CysxxCys found in thioredoxins. It is speculated that the N-terminal region may adopt a thioredoxin fold and catalyse redox reactions []. The N-terminal region also contains a His-rich region, which is thought to mediate heparin binding. Binding to heparan proteoglycans could account for the membrane binding properties of SelP []. The function of the bacterial members of this family is uncharacterised.; GO: 0008430 selenium binding
Probab=95.37 E-value=0.09 Score=45.99 Aligned_cols=78 Identities=13% Similarity=0.259 Sum_probs=56.6
Q ss_pred CeEEEEEEcCCCChhHHHHHHHHHHhHHHHHhCC---CEEEEEcCCCH-HHHHH--HHHHcCCCCceee--cCChHHHHH
Q 027527 97 RKAVVAFARHFGCVLCRKRADYLAAKKDVMDASG---VALVLIGPGSV-EQART--FSEQTKFKGEVYA--DPNHSSYEA 168 (222)
Q Consensus 97 ~~vvVvF~R~~~Cp~C~~el~~L~~~~~~l~~~g---v~lvaIs~~s~-~~i~~--f~~~~~~pfpil~--Dpd~~lyk~ 168 (222)
+.|+||-+-...|.+|..++..|..+..+|+..| |..++|..-+. ...+. +.++..-.|+||- +.+..+...
T Consensus 26 G~VtvVALL~asc~~c~~qa~~le~Lr~kL~~~g~~~I~f~vVN~~~~~s~~~~~~l~~r~~~~ipVyqq~~~q~dvW~~ 105 (238)
T PF04592_consen 26 GHVTVVALLQASCYFCLLQASRLEDLREKLENEGLSNISFMVVNHQGEHSRLKYWELKRRVSEHIPVYQQDENQPDVWEL 105 (238)
T ss_pred CcEEeeeehhhhhHHHHHHHHHHHHHHHHHHHCCCCceEEEEEcCCCcchhHHHHHHHHhCCCCCceecCCccccCHHHH
Confidence 3566666666699999999999999999998765 67888877544 44432 3333333399996 367889999
Q ss_pred cCCccc
Q 027527 169 LSFVSG 174 (222)
Q Consensus 169 lGl~~~ 174 (222)
|+-.+.
T Consensus 106 L~G~kd 111 (238)
T PF04592_consen 106 LNGSKD 111 (238)
T ss_pred hCCCcC
Confidence 998654
No 143
>cd02960 AGR Anterior Gradient (AGR) family; members of this family are similar to secreted proteins encoded by the cement gland-specific genes XAG-1 and XAG-2, expressed in the anterior region of dorsal ectoderm of Xenopus. They are implicated in the formation of the cement gland and the induction of forebrain fate. The human homologs, hAG-2 and hAG-3, are secreted proteins associated with estrogen-positive breast tumors. Yeast two-hybrid studies identified the metastasis-associated C4.4a protein and dystroglycan as binding partners, indicating possible roles in the development and progression of breast cancer. hAG-2 has also been implicated in prostate cancer. Its gene was cloned as an androgen-inducible gene and it was shown to be overexpressed in prostate cancer cells at the mRNA and protein levels. AGR proteins contain one conserved cysteine corresponding to the first cysteine in the CXXC motif of TRX. They show high sequence similarity to ERp19.
Probab=95.12 E-value=0.055 Score=43.24 Aligned_cols=99 Identities=13% Similarity=0.202 Sum_probs=54.4
Q ss_pred CCeEEEEEEcCCCChhHHHHHHHHHHhH--HHHHhCCCEEEEEcCCCHH-HHHHHHHHcCCCCceeecCChHHHHHc-CC
Q 027527 96 DRKAVVAFARHFGCVLCRKRADYLAAKK--DVMDASGVALVLIGPGSVE-QARTFSEQTKFKGEVYADPNHSSYEAL-SF 171 (222)
Q Consensus 96 ~~~vvVvF~R~~~Cp~C~~el~~L~~~~--~~l~~~gv~lvaIs~~s~~-~i~~f~~~~~~pfpil~Dpd~~lyk~l-Gl 171 (222)
.++.|+++|-..||+.|++--..+-+-. .++...+..+|-+-.|..+ .... ...++|.-++.|+++++...+ |-
T Consensus 22 ~~Kpvmv~f~sdwC~~Ck~l~k~~f~~~eV~~~l~~~Fv~V~l~~d~td~~~~~--~g~~vPtivFld~~g~vi~~i~Gy 99 (130)
T cd02960 22 SNKPLMVIHHLEDCPHSQALKKAFAEHKEIQKLAQEDFIMLNLVHETTDKNLSP--DGQYVPRIMFVDPSLTVRADITGR 99 (130)
T ss_pred CCCeEEEEEeCCcCHhHHHHHHHhhCCHHHHHHHHhCeEEEEEEeccCCCCcCc--cCcccCeEEEECCCCCCccccccc
Confidence 3456777789999999998777655432 2332334443334333221 1111 224677779999998765544 33
Q ss_pred ccccceeeccchhHHHHHHHHHHHHhhhc
Q 027527 172 VSGVLVTFTPKAGLKIIQSYMEGYRQDWK 200 (222)
Q Consensus 172 ~~~~~~~~~P~a~~~~l~~~~~g~r~~~k 200 (222)
.....-...|. -+..+..+|+.+.+
T Consensus 100 ~~~~~~~y~~~----~~~~~~~~m~~a~~ 124 (130)
T cd02960 100 YSNRLYTYEPA----DIPLLIENMKKALK 124 (130)
T ss_pred ccCccceeCcC----cHHHHHHHHHHHHH
Confidence 33333344443 23445566666654
No 144
>TIGR02190 GlrX-dom Glutaredoxin-family domain. This C-terminal domain with homology to glutaredoxin is fused to an N-terminal peroxiredoxin-like domain.
Probab=94.97 E-value=0.097 Score=37.38 Aligned_cols=53 Identities=21% Similarity=0.211 Sum_probs=35.2
Q ss_pred EEEEcCCCChhHHHHHHHHHHhHHHHHhCCCEEEEEcCCCHHHHHHHHHHcCC-CCceeec
Q 027527 101 VAFARHFGCVLCRKRADYLAAKKDVMDASGVALVLIGPGSVEQARTFSEQTKF-KGEVYAD 160 (222)
Q Consensus 101 VvF~R~~~Cp~C~~el~~L~~~~~~l~~~gv~lvaIs~~s~~~i~~f~~~~~~-pfpil~D 160 (222)
|+.|...|||+|++--..|. +.|+....|..+..+....+.+.++. .+|.+..
T Consensus 10 V~ly~~~~Cp~C~~ak~~L~-------~~gi~y~~idi~~~~~~~~~~~~~g~~~vP~i~i 63 (79)
T TIGR02190 10 VVVFTKPGCPFCAKAKATLK-------EKGYDFEEIPLGNDARGRSLRAVTGATTVPQVFI 63 (79)
T ss_pred EEEEECCCCHhHHHHHHHHH-------HcCCCcEEEECCCChHHHHHHHHHCCCCcCeEEE
Confidence 55677899999997655554 56777777776655555566666664 4775443
No 145
>PF00462 Glutaredoxin: Glutaredoxin; InterPro: IPR002109 Glutaredoxins [, , ], also known as thioltransferases (disulphide reductases, are small proteins of approximately one hundred amino-acid residues which utilise glutathione and NADPH as cofactors. Oxidized glutathione is regenerated by glutathione reductase. Together these components compose the glutathione system []. Glutaredoxin functions as an electron carrier in the glutathione-dependent synthesis of deoxyribonucleotides by the enzyme ribonucleotide reductase. Like thioredoxin, which functions in a similar way, glutaredoxin possesses an active centre disulphide bond []. It exists in either a reduced or an oxidized form where the two cysteine residues are linked in an intramolecular disulphide bond. Glutaredoxin has been sequenced in a variety of species. On the basis of extensive sequence similarity, it has been proposed [] that Vaccinia virus protein O2L is most probably a glutaredoxin. Finally, it must be noted that Bacteriophage T4 thioredoxin seems also to be evolutionary related. In position 5 of the pattern T4 thioredoxin has Val instead of Pro. This entry represents Glutaredoxin.; GO: 0009055 electron carrier activity, 0015035 protein disulfide oxidoreductase activity, 0045454 cell redox homeostasis; PDB: 1QFN_A 1GRX_A 1EGO_A 1EGR_A 3RHC_A 3RHB_A 3IPZ_A 1NHO_A 3GX8_A 3D5J_A ....
Probab=94.95 E-value=0.12 Score=34.62 Aligned_cols=50 Identities=20% Similarity=0.339 Sum_probs=34.5
Q ss_pred EEEEcCCCChhHHHHHHHHHHhHHHHHhCCCEEEEEcCCCH-HHHHHHHHHcC-CCCce
Q 027527 101 VAFARHFGCVLCRKRADYLAAKKDVMDASGVALVLIGPGSV-EQARTFSEQTK-FKGEV 157 (222)
Q Consensus 101 VvF~R~~~Cp~C~~el~~L~~~~~~l~~~gv~lvaIs~~s~-~~i~~f~~~~~-~pfpi 157 (222)
|+.|...|||.|.+-...| ++.|+..-.+..++. +..+++.+..+ ..+|.
T Consensus 1 V~vy~~~~C~~C~~~~~~L-------~~~~i~y~~~dv~~~~~~~~~l~~~~g~~~~P~ 52 (60)
T PF00462_consen 1 VVVYTKPGCPYCKKAKEFL-------DEKGIPYEEVDVDEDEEAREELKELSGVRTVPQ 52 (60)
T ss_dssp EEEEESTTSHHHHHHHHHH-------HHTTBEEEEEEGGGSHHHHHHHHHHHSSSSSSE
T ss_pred cEEEEcCCCcCHHHHHHHH-------HHcCCeeeEcccccchhHHHHHHHHcCCCccCE
Confidence 4667889999999655444 677888888877765 44455555545 44774
No 146
>PF07976 Phe_hydrox_dim: Phenol hydroxylase, C-terminal dimerisation domain ; InterPro: IPR012941 Phenol hydroxylase is a homodimer which hydroxylates phenol to catechol, or similar products. The enzyme is comprised of three domains. The first two domains form the active site. The third domain, this domain, is involved in forming the dimerisation interface. The domain adopts a thioredoxin-like fold [].; PDB: 2DKH_A 2DKI_A 1PN0_A 1FOH_D.
Probab=94.79 E-value=0.026 Score=46.73 Aligned_cols=110 Identities=21% Similarity=0.235 Sum_probs=69.2
Q ss_pred CCCCccccCcCCCcEEec-CCCCeEeCCCcc--CCCeEEEEEEcCCCChhHHHHHHHHHHhHH-------HHHh------
Q 027527 65 PSVSEDTKNLLDTVKVYD-VNGNAIPISDLW--KDRKAVVAFARHFGCVLCRKRADYLAAKKD-------VMDA------ 128 (222)
Q Consensus 65 ~~~~~~~g~~apdf~L~D-~~G~~v~Lsdl~--~~~~vvVvF~R~~~Cp~C~~el~~L~~~~~-------~l~~------ 128 (222)
......+|..+|+..|.- .||+++.|.+.+ .++.-|+||--..-.+-+.+.+..|++..+ ++..
T Consensus 26 ~a~~l~~G~Rlp~~~v~r~aD~~p~~l~~~l~sdGrfri~vFagd~~~~~~~~~l~~l~~~L~~~~s~~~r~~~~~~~~~ 105 (169)
T PF07976_consen 26 LAGGLRPGRRLPSAKVVRHADGNPVHLQDDLPSDGRFRILVFAGDISLPEQLSRLSALADYLESPSSFLSRFTPKDRDPD 105 (169)
T ss_dssp GBTTS-TTCB----EEEETTTTEEEEGGGG--SSS-EEEEEEEETTTTCHCCCHHHHHHHHHHSTTSHHHHHSBTTS-TT
T ss_pred cccCcCCccccCCceEEEEcCCCChhHhhhcccCCCEEEEEEeCCCccchhHHHHHHHHHHHHhcchHHHhcCCCCCCCC
Confidence 345578999999999976 799999999977 356778999888888777666666666543 3333
Q ss_pred CCCEEEEEcCCCH---------HHHHHHHHHcCCCC-ceeecC------ChHHHHHcCCccc
Q 027527 129 SGVALVLIGPGSV---------EQARTFSEQTKFKG-EVYADP------NHSSYEALSFVSG 174 (222)
Q Consensus 129 ~gv~lvaIs~~s~---------~~i~~f~~~~~~pf-pil~Dp------d~~lyk~lGl~~~ 174 (222)
.-++++.|.+... +..+.|.+++++.+ .||+|. ...+|+.||+.+.
T Consensus 106 s~~~~~~I~~~~~~~~e~~dlP~~~~p~~~~~~~~~~~vy~Dd~~~~~~~g~~y~~~Gid~~ 167 (169)
T PF07976_consen 106 SVFDVLLIHSSPRDEVELFDLPEIFRPFDGKRGWDYWKVYVDDESYHSGHGDAYEKYGIDRD 167 (169)
T ss_dssp SSEEEEEEESS-CCCS-GGGS-CCCS-EETTTTC--SSEEE-S-SSSSTT--HHHHCTBBTT
T ss_pred CeeEEEEEecCCCCceeHHHCcHhhCcccCCCCccceeEEecCcccccCcccHHHhhCCCcC
Confidence 2288999988742 23445555666653 599985 4899999998764
No 147
>PRK13703 conjugal pilus assembly protein TraF; Provisional
Probab=94.76 E-value=0.1 Score=45.99 Aligned_cols=74 Identities=12% Similarity=0.058 Sum_probs=49.9
Q ss_pred CCCccCCCeEEEEEEcCCCChhHHHHHHHHHHhHHHHHhCCCEEEEEcCCCHHHHHHHHHHcCCC-CceeecCChHHHHH
Q 027527 90 ISDLWKDRKAVVAFARHFGCVLCRKRADYLAAKKDVMDASGVALVLIGPGSVEQARTFSEQTKFK-GEVYADPNHSSYEA 168 (222)
Q Consensus 90 Lsdl~~~~~vvVvF~R~~~Cp~C~~el~~L~~~~~~l~~~gv~lvaIs~~s~~~i~~f~~~~~~p-fpil~Dpd~~lyk~ 168 (222)
+.++. ++..+++||| ..||+|.+.++-|+.+.++ .|+.|++|+.|.. +.| ||-. -+|....+.
T Consensus 138 i~~la-~~~GL~fFy~-s~Cp~C~~~aPil~~fa~~---yg~~v~~VS~DG~----------~~p~fp~~-~~d~gqa~~ 201 (248)
T PRK13703 138 IAKLA-EHYGLMFFYR-GQDPIDGQLAQVINDFRDT---YGLSVIPVSVDGV----------INPLLPDS-RTDQGQAQR 201 (248)
T ss_pred HHHHH-hcceEEEEEC-CCCchhHHHHHHHHHHHHH---hCCeEEEEecCCC----------CCCCCCCC-ccChhHHHh
Confidence 44442 3466777777 7799999999999998874 5899999999842 222 3322 134455567
Q ss_pred cCCccccceee
Q 027527 169 LSFVSGVLVTF 179 (222)
Q Consensus 169 lGl~~~~~~~~ 179 (222)
+|+...+..++
T Consensus 202 l~v~~~PAl~L 212 (248)
T PRK13703 202 LGVKYFPALML 212 (248)
T ss_pred cCCcccceEEE
Confidence 77776665544
No 148
>TIGR02180 GRX_euk Glutaredoxin. This model represents eukaryotic glutaredoxins and includes sequences from fungi, plants and metazoans as well as viruses.
Probab=94.74 E-value=0.13 Score=36.17 Aligned_cols=53 Identities=19% Similarity=0.212 Sum_probs=33.5
Q ss_pred EEEEcCCCChhHHHHHHHHHHhHHHHHhCCCEEEEEcCCC-HHHHHH-HHHHcCCC-Cc
Q 027527 101 VAFARHFGCVLCRKRADYLAAKKDVMDASGVALVLIGPGS-VEQART-FSEQTKFK-GE 156 (222)
Q Consensus 101 VvF~R~~~Cp~C~~el~~L~~~~~~l~~~gv~lvaIs~~s-~~~i~~-f~~~~~~p-fp 156 (222)
|+.|...|||+|++-.+.|.++. +. ....++-|..++ .+.+++ +.+.++.. +|
T Consensus 1 V~~f~~~~Cp~C~~~~~~L~~~~--i~-~~~~~~~v~~~~~~~~~~~~l~~~~g~~~vP 56 (84)
T TIGR02180 1 VVVFSKSYCPYCKKAKEILAKLN--VK-PAYEVVELDQLSNGSEIQDYLEEITGQRTVP 56 (84)
T ss_pred CEEEECCCChhHHHHHHHHHHcC--CC-CCCEEEEeeCCCChHHHHHHHHHHhCCCCCC
Confidence 45677999999999888887765 11 125677777653 344444 44444543 55
No 149
>TIGR02187 GlrX_arch Glutaredoxin-like domain protein. This family of archaeal proteins contains a C-terminal domain with homology to bacterial and eukaryotic glutaredoxins, including a CPYC motif. There is an N-terminal domain which has even more distant homology to glutaredoxins. The name "glutaredoxin" may be inappropriate in the sense of working in tandem with glutathione and glutathione reductase which may not be present in the archaea. The overall domain structure appears to be related to bacterial alkylhydroperoxide reductases, but the homology may be distant enough that the function of this family is wholly different.
Probab=94.67 E-value=0.069 Score=45.38 Aligned_cols=42 Identities=19% Similarity=0.396 Sum_probs=29.3
Q ss_pred CCeEEEEEEc--CCCChhHHHHHHHHHHhHHHHHhCCCEEEEEcCC
Q 027527 96 DRKAVVAFAR--HFGCVLCRKRADYLAAKKDVMDASGVALVLIGPG 139 (222)
Q Consensus 96 ~~~vvVvF~R--~~~Cp~C~~el~~L~~~~~~l~~~gv~lvaIs~~ 139 (222)
....+++|+- +.||++|+...+-|.++.+++. ++++..|..+
T Consensus 19 ~~~~i~~f~~~~a~wC~~C~~~~p~l~~la~~~~--~~~i~~v~vd 62 (215)
T TIGR02187 19 NPVEIVVFTDNDKEGCQYCKETEQLLEELSEVSP--KLKLEIYDFD 62 (215)
T ss_pred CCeEEEEEcCCCCCCCCchHHHHHHHHHHHhhCC--CceEEEEecC
Confidence 3445555554 4999999999999998888773 3555555554
No 150
>PF06110 DUF953: Eukaryotic protein of unknown function (DUF953); InterPro: IPR010357 This family consists of several hypothetical eukaryotic proteins of unknown function that are thioredoxin-like.; PDB: 1V9W_A 1WOU_A.
Probab=94.57 E-value=0.12 Score=40.76 Aligned_cols=45 Identities=13% Similarity=0.182 Sum_probs=31.9
Q ss_pred CCeEEEEEE------cCCCChhHHHHHHHHHHhHHHHHhCCCEEEEEcCCCH
Q 027527 96 DRKAVVAFA------RHFGCVLCRKRADYLAAKKDVMDASGVALVLIGPGSV 141 (222)
Q Consensus 96 ~~~vvVvF~------R~~~Cp~C~~el~~L~~~~~~l~~~gv~lvaIs~~s~ 141 (222)
+++++|+|+ -.+|||.|++--+-+.+..... ..+..+|-|..|+.
T Consensus 19 ~~~~fl~F~gs~d~~g~sWCPDC~~aep~v~~~f~~~-~~~~~lv~v~VG~r 69 (119)
T PF06110_consen 19 GKPLFLLFTGSKDETGQSWCPDCVAAEPVVEKAFKKA-PENARLVYVEVGDR 69 (119)
T ss_dssp TSEEEEEEE--B-TTS-BSSHHHHHHHHHHHHHHHH--STTEEEEEEE---H
T ss_pred CCeEEEEEEccCCCCCCcccHHHHHHHHHHHHHHHhC-CCCceEEEEEcCCH
Confidence 457777777 3469999999999999987773 44788888888865
No 151
>cd02976 NrdH NrdH-redoxin (NrdH) family; NrdH is a small monomeric protein with a conserved redox active CXXC motif within a TRX fold, characterized by a glutaredoxin (GRX)-like sequence and TRX-like activity profile. In vitro, it displays protein disulfide reductase activity that is dependent on TRX reductase, not glutathione (GSH). It is part of the NrdHIEF operon, where NrdEF codes for class Ib ribonucleotide reductase (RNR-Ib), an efficient enzyme at low oxygen levels. Under these conditions when GSH is mostly conjugated to spermidine, NrdH can still function and act as a hydrogen donor for RNR-Ib. It has been suggested that the NrdHEF system may be the oldest RNR reducing system, capable of functioning in a microaerophilic environment, where GSH was not yet available. NrdH from Corynebacterium ammoniagenes can form domain-swapped dimers, although it is unknown if this happens in vivo. Domain-swapped dimerization, which results in the blocking of the TRX reductase binding site, cou
Probab=94.49 E-value=0.27 Score=33.09 Aligned_cols=55 Identities=13% Similarity=0.201 Sum_probs=34.5
Q ss_pred EEEEcCCCChhHHHHHHHHHHhHHHHHhCCCEEEEEcCCC-HHHHHHHHHHcC-CCCceeecCC
Q 027527 101 VAFARHFGCVLCRKRADYLAAKKDVMDASGVALVLIGPGS-VEQARTFSEQTK-FKGEVYADPN 162 (222)
Q Consensus 101 VvF~R~~~Cp~C~~el~~L~~~~~~l~~~gv~lvaIs~~s-~~~i~~f~~~~~-~pfpil~Dpd 162 (222)
|++|...|||.|++-...|. +.|+....+..+. .+..++|.+..+ ..+|++.+.+
T Consensus 2 v~l~~~~~c~~c~~~~~~l~-------~~~i~~~~~~i~~~~~~~~~~~~~~~~~~vP~i~~~~ 58 (73)
T cd02976 2 VTVYTKPDCPYCKATKRFLD-------ERGIPFEEVDVDEDPEALEELKKLNGYRSVPVVVIGD 58 (73)
T ss_pred EEEEeCCCChhHHHHHHHHH-------HCCCCeEEEeCCCCHHHHHHHHHHcCCcccCEEEECC
Confidence 45677899999997544443 3566666666653 344455655444 4578776654
No 152
>PRK11200 grxA glutaredoxin 1; Provisional
Probab=94.47 E-value=0.2 Score=36.11 Aligned_cols=58 Identities=9% Similarity=0.136 Sum_probs=37.2
Q ss_pred EEEEcCCCChhHHHHHHHHHHhHHHHHhCCCEEEEEcCCC-HHHHHHHHHHcC---CCCc-eeec
Q 027527 101 VAFARHFGCVLCRKRADYLAAKKDVMDASGVALVLIGPGS-VEQARTFSEQTK---FKGE-VYAD 160 (222)
Q Consensus 101 VvF~R~~~Cp~C~~el~~L~~~~~~l~~~gv~lvaIs~~s-~~~i~~f~~~~~---~pfp-il~D 160 (222)
|..|...|||+|.+-...|.++..+. .|+...-|..+. ....+++.+..+ ..+| |+.|
T Consensus 3 v~iy~~~~C~~C~~a~~~L~~l~~~~--~~i~~~~idi~~~~~~~~el~~~~~~~~~~vP~ifi~ 65 (85)
T PRK11200 3 VVIFGRPGCPYCVRAKELAEKLSEER--DDFDYRYVDIHAEGISKADLEKTVGKPVETVPQIFVD 65 (85)
T ss_pred EEEEeCCCChhHHHHHHHHHhhcccc--cCCcEEEEECCCChHHHHHHHHHHCCCCCcCCEEEEC
Confidence 56678899999999888888887654 466766666653 222333444444 3456 4444
No 153
>cd03026 AhpF_NTD_C TRX-GRX-like family, Alkyl hydroperoxide reductase F subunit (AhpF) N-terminal domain (NTD) subfamily, C-terminal TRX-fold subdomain; AhpF is a homodimeric flavoenzyme which catalyzes the NADH-dependent reduction of the peroxiredoxin AhpC, which then reduces hydrogen peroxide and organic hydroperoxides. AhpF contains an NTD containing two contiguous TRX-fold subdomains similar to Pyrococcus furiosus protein disulfide oxidoreductase (PfPDO). It also contains a catalytic core similar to TRX reductase containing FAD and NADH binding domains with an active site disulfide. The proposed mechanism of action of AhpF is similar to a TRX/TRX reductase system. The flow of reducing equivalents goes from NADH - catalytic core of AhpF - NTD of AhpF - AhpC - peroxide substrates. The catalytic CXXC motif of the NTD of AhpF is contained in its C-terminal TRX subdomain.
Probab=94.42 E-value=0.055 Score=40.04 Aligned_cols=60 Identities=8% Similarity=0.078 Sum_probs=40.6
Q ss_pred CCeEEEEEEcCCCChhHHHHHHHHHHhHHHHHhCCCEEEEEcCCCHHHHHHHHHHcCCC-Cc-eeec
Q 027527 96 DRKAVVAFARHFGCVLCRKRADYLAAKKDVMDASGVALVLIGPGSVEQARTFSEQTKFK-GE-VYAD 160 (222)
Q Consensus 96 ~~~vvVvF~R~~~Cp~C~~el~~L~~~~~~l~~~gv~lvaIs~~s~~~i~~f~~~~~~p-fp-il~D 160 (222)
++|+-|.+|-..||+.|..-.+.+.++..+.. ++++..|..++. .+.++++++. .| ++.|
T Consensus 11 ~~pv~i~~F~~~~C~~C~~~~~~~~~l~~~~~--~i~~~~vd~~~~---~e~a~~~~V~~vPt~vid 72 (89)
T cd03026 11 NGPINFETYVSLSCHNCPDVVQALNLMAVLNP--NIEHEMIDGALF---QDEVEERGIMSVPAIFLN 72 (89)
T ss_pred CCCEEEEEEECCCCCCcHHHHHHHHHHHHHCC--CceEEEEEhHhC---HHHHHHcCCccCCEEEEC
Confidence 67888999999999999987777776665442 577777776544 3334455654 34 3444
No 154
>TIGR02187 GlrX_arch Glutaredoxin-like domain protein. This family of archaeal proteins contains a C-terminal domain with homology to bacterial and eukaryotic glutaredoxins, including a CPYC motif. There is an N-terminal domain which has even more distant homology to glutaredoxins. The name "glutaredoxin" may be inappropriate in the sense of working in tandem with glutathione and glutathione reductase which may not be present in the archaea. The overall domain structure appears to be related to bacterial alkylhydroperoxide reductases, but the homology may be distant enough that the function of this family is wholly different.
Probab=94.41 E-value=0.12 Score=43.97 Aligned_cols=44 Identities=9% Similarity=-0.004 Sum_probs=30.1
Q ss_pred CCeEEEEEEcCCCChhHHHHHHHHHHhHHHHHhCCCEEEEEcCCCH
Q 027527 96 DRKAVVAFARHFGCVLCRKRADYLAAKKDVMDASGVALVLIGPGSV 141 (222)
Q Consensus 96 ~~~vvVvF~R~~~Cp~C~~el~~L~~~~~~l~~~gv~lvaIs~~s~ 141 (222)
+++++|+.|+..||++|..-.+.+.++..+ ...+.+.-|..+..
T Consensus 132 ~~pv~I~~F~a~~C~~C~~~~~~l~~l~~~--~~~i~~~~vD~~~~ 175 (215)
T TIGR02187 132 DEPVRIEVFVTPTCPYCPYAVLMAHKFALA--NDKILGEMIEANEN 175 (215)
T ss_pred CCCcEEEEEECCCCCCcHHHHHHHHHHHHh--cCceEEEEEeCCCC
Confidence 568888889999999999766655554443 23466666666543
No 155
>cd03032 ArsC_Spx Arsenate Reductase (ArsC) family, Spx subfamily; Spx is a unique RNA polymerase (RNAP)-binding protein present in bacilli and some mollicutes. It inhibits transcription by binding to the C-terminal domain of the alpha subunit of RNAP, disrupting complex formation between RNAP and certain transcriptional activator proteins like ResD and ComA. In response to oxidative stress, Spx can also activate transcription, making it a general regulator that exerts both positive and negative control over transcription initiation. Spx has been shown to exert redox-sensitive transcriptional control over genes like trxA (TRX) and trxB (TRX reductase), genes that function in thiol homeostasis. This redox-sensitive activity is dependent on the presence of a CXXC motif, present in some members of the Spx subfamily, that acts as a thiol/disulfide switch. Spx has also been shown to repress genes in a sulfate-dependent manner independent of the presence of the CXXC motif.
Probab=94.40 E-value=0.14 Score=39.38 Aligned_cols=66 Identities=14% Similarity=0.190 Sum_probs=51.4
Q ss_pred EEEEcCCCChhHHHHHHHHHHhHHHHHhCCCEEEEEcC--C--CHHHHHHHHHHcCCCCceeecCChHHHHHcCCcc
Q 027527 101 VAFARHFGCVLCRKRADYLAAKKDVMDASGVALVLIGP--G--SVEQARTFSEQTKFKGEVYADPNHSSYEALSFVS 173 (222)
Q Consensus 101 VvF~R~~~Cp~C~~el~~L~~~~~~l~~~gv~lvaIs~--~--s~~~i~~f~~~~~~pfpil~Dpd~~lyk~lGl~~ 173 (222)
|.+|...+|+.|++-...|. +.|+.+..|.. + +.++++++.+..+.++.-+.......|+.+++..
T Consensus 2 i~iY~~~~C~~c~ka~~~L~-------~~gi~~~~idi~~~~~~~~el~~~~~~~~~~~~~l~n~~~~~~k~l~~~~ 71 (115)
T cd03032 2 IKLYTSPSCSSCRKAKQWLE-------EHQIPFEERNLFKQPLTKEELKEILSLTENGVEDIISTRSKAFKNLNIDI 71 (115)
T ss_pred EEEEeCCCCHHHHHHHHHHH-------HCCCceEEEecCCCcchHHHHHHHHHHhcCCHHHHHhcCcHHHHHcCCCc
Confidence 56788999999997655554 45666555543 3 3579999999998888888899999999999876
No 156
>PHA02125 thioredoxin-like protein
Probab=94.30 E-value=0.086 Score=37.28 Aligned_cols=21 Identities=19% Similarity=0.241 Sum_probs=17.8
Q ss_pred EEEEcCCCChhHHHHHHHHHH
Q 027527 101 VAFARHFGCVLCRKRADYLAA 121 (222)
Q Consensus 101 VvF~R~~~Cp~C~~el~~L~~ 121 (222)
|+.|.+.||++|+.-.+.|.+
T Consensus 2 iv~f~a~wC~~Ck~~~~~l~~ 22 (75)
T PHA02125 2 IYLFGAEWCANCKMVKPMLAN 22 (75)
T ss_pred EEEEECCCCHhHHHHHHHHHH
Confidence 788899999999987777754
No 157
>PTZ00062 glutaredoxin; Provisional
Probab=94.28 E-value=0.086 Score=45.17 Aligned_cols=40 Identities=8% Similarity=0.043 Sum_probs=29.7
Q ss_pred eEEEEEEcCCCChhHHHHHHHHHHhHHHHHhCCCEEEEEcCC
Q 027527 98 KAVVAFARHFGCVLCRKRADYLAAKKDVMDASGVALVLIGPG 139 (222)
Q Consensus 98 ~vvVvF~R~~~Cp~C~~el~~L~~~~~~l~~~gv~lvaIs~~ 139 (222)
..+|++|++.|||.|+...+-|.++.+++. .++++-|..+
T Consensus 18 g~~vl~f~a~w~~~C~~m~~vl~~l~~~~~--~~~F~~V~~d 57 (204)
T PTZ00062 18 GKLVLYVKSSKEPEYEQLMDVCNALVEDFP--SLEFYVVNLA 57 (204)
T ss_pred CcEEEEEeCCCCcchHHHHHHHHHHHHHCC--CcEEEEEccc
Confidence 567999999999999988888888877653 3554444433
No 158
>cd02977 ArsC_family Arsenate Reductase (ArsC) family; composed of TRX-fold arsenic reductases and similar proteins including the transcriptional regulator, Spx. ArsC catalyzes the reduction of arsenate [As(V)] to arsenite [As(III)], using reducing equivalents derived from glutathione (GSH) via glutaredoxin (GRX), through a single catalytic cysteine. This family of predominantly bacterial enzymes is unrelated to two other families of arsenate reductases which show similarity to low-molecular-weight acid phosphatases and phosphotyrosyl phosphatases. Spx is a general regulator that exerts negative and positive control over transcription initiation by binding to the C-terminal domain of the alpha subunit of RNA polymerase.
Probab=94.21 E-value=0.11 Score=39.09 Aligned_cols=66 Identities=15% Similarity=0.259 Sum_probs=49.5
Q ss_pred EEEEcCCCChhHHHHHHHHHHhHHHHHhCCCEEEEEcC----CCHHHHHHHHHHcCCCCceeecCChHHHHHcCCcc
Q 027527 101 VAFARHFGCVLCRKRADYLAAKKDVMDASGVALVLIGP----GSVEQARTFSEQTKFKGEVYADPNHSSYEALSFVS 173 (222)
Q Consensus 101 VvF~R~~~Cp~C~~el~~L~~~~~~l~~~gv~lvaIs~----~s~~~i~~f~~~~~~pfpil~Dpd~~lyk~lGl~~ 173 (222)
|.+|...+|+.|++-...|.+ +|+....|.. .+.++++++..+.+.+..-+.......|+.++...
T Consensus 1 i~iY~~~~C~~c~ka~~~L~~-------~~i~~~~idi~~~~~~~~~l~~~~~~~~~~~~~li~~~~~~~~~l~~~~ 70 (105)
T cd02977 1 ITIYGNPNCSTSRKALAWLEE-------HGIEYEFIDYLKEPPTKEELKELLAKLGLGVEDLFNTRGTPYRKLGLAD 70 (105)
T ss_pred CEEEECCCCHHHHHHHHHHHH-------cCCCcEEEeeccCCCCHHHHHHHHHhcCCCHHHHHhcCCchHHHcCCcc
Confidence 357888999999976655554 4544444433 24589999999999888777789999999999873
No 159
>cd02988 Phd_like_VIAF Phosducin (Phd)-like family, Viral inhibitor of apoptosis (IAP)-associated factor (VIAF) subfamily; VIAF is a Phd-like protein that functions in caspase activation during apoptosis. It was identified as an IAP binding protein through a screen of a human B-cell library using a prototype IAP. VIAF lacks a consensus IAP binding motif and while it does not function as an IAP antagonist, it still plays a regulatory role in the complete activation of caspases. VIAF itself is a substrate for IAP-mediated ubiquitination, suggesting that it may be a target of IAPs in the prevention of cell death. The similarity of VIAF to Phd points to a potential role distinct from apoptosis regulation. Phd functions as a cytosolic regulator of G protein by specifically binding to G protein betagamma (Gbg)-subunits. The C-terminal domain of Phd adopts a thioredoxin fold, but it does not contain a CXXC motif. Phd interacts with G protein beta mostly through the N-terminal helical domain.
Probab=94.16 E-value=0.086 Score=44.58 Aligned_cols=40 Identities=23% Similarity=0.149 Sum_probs=33.3
Q ss_pred eEEEEEEcCCCChhHHHHHHHHHHhHHHHHhCCCEEEEEcCC
Q 027527 98 KAVVAFARHFGCVLCRKRADYLAAKKDVMDASGVALVLIGPG 139 (222)
Q Consensus 98 ~vvVvF~R~~~Cp~C~~el~~L~~~~~~l~~~gv~lvaIs~~ 139 (222)
..|||.|++.||+.|+...+.|.++..++. .++++-|..+
T Consensus 103 ~~VVV~Fya~wc~~C~~m~~~l~~LA~k~~--~vkFvkI~ad 142 (192)
T cd02988 103 TWVVVHLYKDGIPLCRLLNQHLSELARKFP--DTKFVKIIST 142 (192)
T ss_pred CEEEEEEECCCCchHHHHHHHHHHHHHHCC--CCEEEEEEhH
Confidence 468888899999999999999999988874 4777777665
No 160
>cd03036 ArsC_like Arsenate Reductase (ArsC) family, unknown subfamily; uncharacterized proteins containing a CXXC motif with similarity to thioredoxin (TRX)-fold arsenic reductases, ArsC. Proteins containing a redox active CXXC motif like TRX and glutaredoxin (GRX) function as protein disulfide oxidoreductases, altering the redox state of target proteins via the reversible oxidation of the active site dithiol. ArsC catalyzes the reduction of arsenate [As(V)] to arsenite [As(III)], using reducing equivalents derived from glutathione via GRX, through a single catalytic cysteine.
Probab=94.11 E-value=0.12 Score=39.59 Aligned_cols=65 Identities=23% Similarity=0.390 Sum_probs=49.6
Q ss_pred EEEcCCCChhHHHHHHHHHHhHHHHHhCCCEEEEEc--CC--CHHHHHHHHHHcCCCCceeecCChHHHHHcCCcc
Q 027527 102 AFARHFGCVLCRKRADYLAAKKDVMDASGVALVLIG--PG--SVEQARTFSEQTKFKGEVYADPNHSSYEALSFVS 173 (222)
Q Consensus 102 vF~R~~~Cp~C~~el~~L~~~~~~l~~~gv~lvaIs--~~--s~~~i~~f~~~~~~pfpil~Dpd~~lyk~lGl~~ 173 (222)
.+|...+|+.|++-...|.+ +|+....|. .+ +.++++++.+..+.+..-+.....+.|+.+++..
T Consensus 2 ~iY~~~~C~~c~ka~~~L~~-------~~i~~~~idi~~~~~~~~el~~~~~~~~~~~~~l~~~~~~~~~~l~~~~ 70 (111)
T cd03036 2 KFYEYPKCSTCRKAKKWLDE-------HGVDYTAIDIVEEPPSKEELKKWLEKSGLPLKKFFNTSGKSYRELGLKD 70 (111)
T ss_pred EEEECCCCHHHHHHHHHHHH-------cCCceEEecccCCcccHHHHHHHHHHcCCCHHHHHhcCCchHHhCCccc
Confidence 46788999999987666655 455544443 33 4578999999999988777788899999999874
No 161
>PRK01655 spxA transcriptional regulator Spx; Reviewed
Probab=93.93 E-value=0.19 Score=39.79 Aligned_cols=66 Identities=12% Similarity=0.252 Sum_probs=50.6
Q ss_pred EEEEcCCCChhHHHHHHHHHHhHHHHHhCCCEEEEEc--CC--CHHHHHHHHHHcCCCCceeecCChHHHHHcCCcc
Q 027527 101 VAFARHFGCVLCRKRADYLAAKKDVMDASGVALVLIG--PG--SVEQARTFSEQTKFKGEVYADPNHSSYEALSFVS 173 (222)
Q Consensus 101 VvF~R~~~Cp~C~~el~~L~~~~~~l~~~gv~lvaIs--~~--s~~~i~~f~~~~~~pfpil~Dpd~~lyk~lGl~~ 173 (222)
|.+|-..+|+.|++-...|. +.|+....|. .+ +.++++++.+..+.++.-+.....+.|+.+++..
T Consensus 2 i~iY~~~~C~~C~ka~~~L~-------~~gi~~~~idi~~~~~~~~eL~~~l~~~~~g~~~lin~~~~~~k~l~~~~ 71 (131)
T PRK01655 2 VTLFTSPSCTSCRKAKAWLE-------EHDIPFTERNIFSSPLTIDEIKQILRMTEDGTDEIISTRSKVFQKLNVDV 71 (131)
T ss_pred EEEEeCCCChHHHHHHHHHH-------HcCCCcEEeeccCChhhHHHHHHHHHHhcCCHHHHHhcCcHHHHhCCCCc
Confidence 56888999999998665554 4565554443 33 3479999999998888777889999999999876
No 162
>cd02066 GRX_family Glutaredoxin (GRX) family; composed of GRX, approximately 10 kDa in size, and proteins containing a GRX or GRX-like domain. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins such as ribonucleotide reductase. It contains a redox active CXXC motif in a TRX fold and uses a similar dithiol mechanism employed by TRXs for intramolecular disulfide bond reduction of protein substrates. Unlike TRX, GRX has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. The flow of reducing equivalents in the GRX system goes from NADPH - GSH reductase - GSH - GRX - protein substrates. By altering the redox state of target proteins, GRX is involved in many cellular functions including DNA synthesis, signal transduction and the defense against oxidative stress. Different classes are known including human GRX1 and GRX2, as well as E. coli GRX1 and GRX3, which
Probab=93.67 E-value=0.37 Score=32.08 Aligned_cols=53 Identities=13% Similarity=0.134 Sum_probs=33.4
Q ss_pred EEEEcCCCChhHHHHHHHHHHhHHHHHhCCCEEEEEcCCCHH-HHHHHHHHcCC-CCceeec
Q 027527 101 VAFARHFGCVLCRKRADYLAAKKDVMDASGVALVLIGPGSVE-QARTFSEQTKF-KGEVYAD 160 (222)
Q Consensus 101 VvF~R~~~Cp~C~~el~~L~~~~~~l~~~gv~lvaIs~~s~~-~i~~f~~~~~~-pfpil~D 160 (222)
|+.|-..|||.|++-...|.+ .++.+.-+..++.. ..+.+.+.++. .+|.+..
T Consensus 2 v~ly~~~~Cp~C~~~~~~L~~-------~~i~~~~~di~~~~~~~~~l~~~~~~~~~P~~~~ 56 (72)
T cd02066 2 VVVFSKSTCPYCKRAKRLLES-------LGIEFEEIDILEDGELREELKELSGWPTVPQIFI 56 (72)
T ss_pred EEEEECCCCHHHHHHHHHHHH-------cCCcEEEEECCCCHHHHHHHHHHhCCCCcCEEEE
Confidence 456678999999976665554 45666666665543 44555555665 4675554
No 163
>cd02958 UAS UAS family; UAS is a domain of unknown function. Most members of this family are uncharacterized proteins with similarity to FAS-associated factor 1 (FAF1) and ETEA because of the presence of a UAS domain N-terminal to a ubiquitin-associated UBX domain. FAF1 is a longer protein, compared to the other members of this family, having additional N-terminal domains, a ubiquitin-associated UBA domain and a nuclear targeting domain. FAF1 is an apoptotic signaling molecule that acts downstream in the Fas signal transduction pathway. It interacts with the cytoplasmic domain of Fas, but not to a Fas mutant that is deficient in signal transduction. ETEA is the protein product of a highly expressed gene in T-cells and eosinophils of atopic dermatitis patients. The presence of the ubiquitin-associated UBX domain in the proteins of this family suggests the possibility of their involvement in ubiquitination. Recently, FAF1 has been shown to interact with valosin-containing protein (VCP),
Probab=93.61 E-value=0.22 Score=37.75 Aligned_cols=67 Identities=12% Similarity=0.116 Sum_probs=43.2
Q ss_pred CCeEEEEEEcCCCChhHHHHHHHHHH---hHHHHHhCCCEEEEEcCCCHHHHHHHHHHcC---CCCceeecC-ChH
Q 027527 96 DRKAVVAFARHFGCVLCRKRADYLAA---KKDVMDASGVALVLIGPGSVEQARTFSEQTK---FKGEVYADP-NHS 164 (222)
Q Consensus 96 ~~~vvVvF~R~~~Cp~C~~el~~L~~---~~~~l~~~gv~lvaIs~~s~~~i~~f~~~~~---~pfpil~Dp-d~~ 164 (222)
.++.|+|+|.+.||+.|......+=. ..+.+.+ +..++.+..+++ +..+|.+.++ +|.-++.|+ +++
T Consensus 16 ~~K~llv~~~~~~c~~c~~~~~~vl~~~~v~~~l~~-~~v~~~~d~~~~-e~~~~~~~~~~~~~P~~~~i~~~~g~ 89 (114)
T cd02958 16 EKKWLLVYLQSEDEFDSQVLNRDLWSNESVKEFIRE-NFIFWQCDIDSS-EGQRFLQSYKVDKYPHIAIIDPRTGE 89 (114)
T ss_pred hCceEEEEEecCCcchHHHHHHHHcCCHHHHHHHHh-CEEEEEecCCCc-cHHHHHHHhCccCCCeEEEEeCccCc
Confidence 46789999999999999986654322 2334433 555666666654 3445655554 555688898 554
No 164
>TIGR01617 arsC_related transcriptional regulator, Spx/MgsR family. This model represents a portion of the proteins within the larger set covered by Pfam model pfam03960. That larger family includes a glutaredoxin-dependent arsenate reductase (TIGR00014). Characterized members of this family include Spx and MgsR from Bacillus subtili. Spx is a global regulator for response to thiol-specific oxidative stress. It interacts with RNA polymerase. MgsR (modulator of the general stress response, also called YqgZ) provides a second level of regulation for more than a third of the proteins in the B. subtilis general stress regulon controlled by Sigma-B.
Probab=93.53 E-value=0.23 Score=38.26 Aligned_cols=65 Identities=20% Similarity=0.278 Sum_probs=49.9
Q ss_pred EEEcCCCChhHHHHHHHHHHhHHHHHhCCCEEEEEcCC----CHHHHHHHHHHcCCCCceeecCChHHHHHcCCcc
Q 027527 102 AFARHFGCVLCRKRADYLAAKKDVMDASGVALVLIGPG----SVEQARTFSEQTKFKGEVYADPNHSSYEALSFVS 173 (222)
Q Consensus 102 vF~R~~~Cp~C~~el~~L~~~~~~l~~~gv~lvaIs~~----s~~~i~~f~~~~~~pfpil~Dpd~~lyk~lGl~~ 173 (222)
.+|...+|+.|++-...|.+ .|+.+..|... +.+++.++.+..+....-+.+.....|+.+++..
T Consensus 2 ~iY~~~~C~~c~ka~~~L~~-------~~i~~~~idi~~~~~~~~el~~l~~~~~~~~~~lin~~~~~~k~l~~~~ 70 (117)
T TIGR01617 2 KVYGSPNCTTCKKARRWLEA-------NGIEYQFIDIGEDGPTREELLDILSLLEDGIDPLLNTRGQSYRALNTSN 70 (117)
T ss_pred EEEeCCCCHHHHHHHHHHHH-------cCCceEEEecCCChhhHHHHHHHHHHcCCCHHHheeCCCcchhhCCchh
Confidence 46788999999987666655 56665555432 3478889999999888777889999999999753
No 165
>TIGR00365 monothiol glutaredoxin, Grx4 family. The gene for the member of this glutaredoxin family in E. coli, originally designated ydhD, is now designated grxD. Its protein, Grx4, is a monothiol glutaredoxin similar to Grx5 of yeast, which is involved in iron-sulfur cluster formation.
Probab=93.49 E-value=0.41 Score=35.85 Aligned_cols=59 Identities=17% Similarity=0.292 Sum_probs=33.1
Q ss_pred cCCCeEEEEEEcC----CCChhHHHHHHHHHHhHHHHHhCCCEEEEEcCCCHHHH-HHHHHHcCC-CCc-eeec
Q 027527 94 WKDRKAVVAFARH----FGCVLCRKRADYLAAKKDVMDASGVALVLIGPGSVEQA-RTFSEQTKF-KGE-VYAD 160 (222)
Q Consensus 94 ~~~~~vvVvF~R~----~~Cp~C~~el~~L~~~~~~l~~~gv~lvaIs~~s~~~i-~~f~~~~~~-pfp-il~D 160 (222)
.++++ ||+|-.. .|||+|.+-...| ++.|+....+..++..++ ++..+..+. .+| |+.|
T Consensus 9 i~~~~-Vvvf~kg~~~~~~Cp~C~~ak~lL-------~~~~i~~~~~di~~~~~~~~~l~~~tg~~tvP~vfi~ 74 (97)
T TIGR00365 9 IKENP-VVLYMKGTPQFPQCGFSARAVQIL-------KACGVPFAYVNVLEDPEIRQGIKEYSNWPTIPQLYVK 74 (97)
T ss_pred hccCC-EEEEEccCCCCCCCchHHHHHHHH-------HHcCCCEEEEECCCCHHHHHHHHHHhCCCCCCEEEEC
Confidence 33444 5666664 7999999654444 445666666655433333 344444554 366 4444
No 166
>PRK10329 glutaredoxin-like protein; Provisional
Probab=93.23 E-value=0.47 Score=34.34 Aligned_cols=55 Identities=16% Similarity=0.283 Sum_probs=35.9
Q ss_pred EEEEcCCCChhHHHHHHHHHHhHHHHHhCCCEEEEEcCCCHHHHHHHHHHcCC-CCceeecCC
Q 027527 101 VAFARHFGCVLCRKRADYLAAKKDVMDASGVALVLIGPGSVEQARTFSEQTKF-KGEVYADPN 162 (222)
Q Consensus 101 VvF~R~~~Cp~C~~el~~L~~~~~~l~~~gv~lvaIs~~s~~~i~~f~~~~~~-pfpil~Dpd 162 (222)
|..|-..|||+|..--..| ++.|+..-.|..+...+..+.....+. ..|++...+
T Consensus 3 v~lYt~~~Cp~C~~ak~~L-------~~~gI~~~~idi~~~~~~~~~~~~~g~~~vPvv~i~~ 58 (81)
T PRK10329 3 ITIYTRNDCVQCHATKRAM-------ESRGFDFEMINVDRVPEAAETLRAQGFRQLPVVIAGD 58 (81)
T ss_pred EEEEeCCCCHhHHHHHHHH-------HHCCCceEEEECCCCHHHHHHHHHcCCCCcCEEEECC
Confidence 5567789999999644444 568888888877755444443444454 478666544
No 167
>KOG0191 consensus Thioredoxin/protein disulfide isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=93.22 E-value=0.15 Score=47.16 Aligned_cols=57 Identities=12% Similarity=0.123 Sum_probs=40.3
Q ss_pred CCeEEEEEEcCCCChhHHHHHHHHHHhHHHHHhCCCEEEEEcCCCHHHHHHHHHHcCCC-Cc
Q 027527 96 DRKAVVAFARHFGCVLCRKRADYLAAKKDVMDASGVALVLIGPGSVEQARTFSEQTKFK-GE 156 (222)
Q Consensus 96 ~~~vvVvF~R~~~Cp~C~~el~~L~~~~~~l~~~gv~lvaIs~~s~~~i~~f~~~~~~p-fp 156 (222)
+....++.|.+.||.+|.+.++.+.++...++. -+.+..|. ....+..++++++. ||
T Consensus 46 ~~~~~~v~fyapwc~~c~~l~~~~~~~~~~l~~-~~~~~~vd---~~~~~~~~~~y~i~gfP 103 (383)
T KOG0191|consen 46 DDSPWLVEFYAPWCGHCKKLAPTYKKLAKALKG-KVKIGAVD---CDEHKDLCEKYGIQGFP 103 (383)
T ss_pred cCCceEEEEECCCCcchhhhchHHHHHHHHhcC-ceEEEEeC---chhhHHHHHhcCCccCc
Confidence 345677788899999999999999988887765 23334444 44556666666765 45
No 168
>TIGR02194 GlrX_NrdH Glutaredoxin-like protein NrdH. NrdH-redoxin is a representative of a class of small redox proteins that contain a conserved CXXC motif and are characterized by a glutaredoxin-like amino acid sequence and thioredoxin-like activity profile. Unlike other the glutaredoxins to which it is most closely related, NrdH aparrently does not interact with glutathione/glutathione reductase, but rather with thioredoxin reductase to catalyze the reduction of ribonucleotide reductase.
Probab=93.05 E-value=0.47 Score=33.06 Aligned_cols=54 Identities=19% Similarity=0.302 Sum_probs=35.0
Q ss_pred EEEEcCCCChhHHHHHHHHHHhHHHHHhCCCEEEEEcCCCHHHHHHHHHHcCC-CCceeecC
Q 027527 101 VAFARHFGCVLCRKRADYLAAKKDVMDASGVALVLIGPGSVEQARTFSEQTKF-KGEVYADP 161 (222)
Q Consensus 101 VvF~R~~~Cp~C~~el~~L~~~~~~l~~~gv~lvaIs~~s~~~i~~f~~~~~~-pfpil~Dp 161 (222)
|.+|...+||.|++-...|. +.|+..-.+..+......+..++.+. ..|++...
T Consensus 1 v~ly~~~~Cp~C~~ak~~L~-------~~~i~~~~~di~~~~~~~~~~~~~g~~~vP~v~~~ 55 (72)
T TIGR02194 1 ITVYSKNNCVQCKMTKKALE-------EHGIAFEEINIDEQPEAIDYVKAQGFRQVPVIVAD 55 (72)
T ss_pred CEEEeCCCCHHHHHHHHHHH-------HCCCceEEEECCCCHHHHHHHHHcCCcccCEEEEC
Confidence 35778899999998666664 56777777766644444444444564 57765543
No 169
>PRK12559 transcriptional regulator Spx; Provisional
Probab=93.01 E-value=0.33 Score=38.55 Aligned_cols=66 Identities=14% Similarity=0.246 Sum_probs=50.5
Q ss_pred EEEEcCCCChhHHHHHHHHHHhHHHHHhCCCEEEEE--cCC--CHHHHHHHHHHcCCCCceeecCChHHHHHcCCcc
Q 027527 101 VAFARHFGCVLCRKRADYLAAKKDVMDASGVALVLI--GPG--SVEQARTFSEQTKFKGEVYADPNHSSYEALSFVS 173 (222)
Q Consensus 101 VvF~R~~~Cp~C~~el~~L~~~~~~l~~~gv~lvaI--s~~--s~~~i~~f~~~~~~pfpil~Dpd~~lyk~lGl~~ 173 (222)
|.+|-..+|+.|++-...|. +.|+..-.+ ..+ +.++++.+.+..+.+..-+.....+.|+.+++..
T Consensus 2 i~iY~~~~C~~crkA~~~L~-------~~gi~~~~~di~~~~~s~~el~~~l~~~~~g~~~lin~~~~~~k~l~~~~ 71 (131)
T PRK12559 2 VVLYTTASCASCRKAKAWLE-------ENQIDYTEKNIVSNSMTVDELKSILRLTEEGATEIISTRSKTFQDLNINI 71 (131)
T ss_pred EEEEeCCCChHHHHHHHHHH-------HcCCCeEEEEeeCCcCCHHHHHHHHHHcCCCHHHHHhcCcHHHHhCCCCc
Confidence 56888999999998665554 445554444 333 4589999999988887777789999999999875
No 170
>smart00594 UAS UAS domain.
Probab=92.98 E-value=0.36 Score=37.39 Aligned_cols=66 Identities=12% Similarity=0.115 Sum_probs=44.7
Q ss_pred CCeEEEEEEcCCCChhHHHHHHHHHHh---HHHHHhCCCEEEEEcCCCHHHHHHHHHHcC---CCCceeecCCh
Q 027527 96 DRKAVVAFARHFGCVLCRKRADYLAAK---KDVMDASGVALVLIGPGSVEQARTFSEQTK---FKGEVYADPNH 163 (222)
Q Consensus 96 ~~~vvVvF~R~~~Cp~C~~el~~L~~~---~~~l~~~gv~lvaIs~~s~~~i~~f~~~~~---~pfpil~Dpd~ 163 (222)
++|.++|++...||+.|....+.+=.. .+.+ +.+..++.+...+.+. .++++.++ +|+-++.|+++
T Consensus 26 ~~K~~lv~~~~~~c~~c~~~~r~vl~~~~V~~~i-~~~fv~~~~dv~~~eg-~~l~~~~~~~~~P~~~~l~~~~ 97 (122)
T smart00594 26 QRRLLWLYLHSQDSPDSQVFNRDVLCNEAVKSLI-RENFIFWQVDVDTSEG-QRVSQFYKLDSFPYVAIVDPRT 97 (122)
T ss_pred hcCCEEEEEeCCCCchHHHHHHHHccCHHHHHHH-HcCEEEEEecCCChhH-HHHHHhcCcCCCCEEEEEecCC
Confidence 457889999999999999988764332 3334 4466666676666643 45665554 55557888886
No 171
>PF13462 Thioredoxin_4: Thioredoxin; PDB: 3FEU_A 3HZ8_A 3DVW_A 3A3T_E 3GMF_A 1Z6M_A 3GYK_C 3BCK_A 3BD2_A 3BCI_A ....
Probab=92.61 E-value=0.38 Score=37.86 Aligned_cols=49 Identities=22% Similarity=0.218 Sum_probs=35.9
Q ss_pred eEeCCCccCCCeEEEEEEcCCCChhHHHHHHHHHHhHHHH-HhCCCEEEEEc
Q 027527 87 AIPISDLWKDRKAVVAFARHFGCVLCRKRADYLAAKKDVM-DASGVALVLIG 137 (222)
Q Consensus 87 ~v~Lsdl~~~~~vvVvF~R~~~Cp~C~~el~~L~~~~~~l-~~~gv~lvaIs 137 (222)
.+.+++- +.++.|+.|-.+.||+|++....+.++.+++ +...+.++.+.
T Consensus 4 ~~~~G~~--~a~~~v~~f~d~~Cp~C~~~~~~~~~~~~~~i~~~~v~~~~~~ 53 (162)
T PF13462_consen 4 DPTIGNP--DAPITVTEFFDFQCPHCAKFHEELEKLLKKYIDPGKVKFVFRP 53 (162)
T ss_dssp SEEES-T--TTSEEEEEEE-TTSHHHHHHHHHHHHHHHHHTTTTTEEEEEEE
T ss_pred CCeecCC--CCCeEEEEEECCCCHhHHHHHHHHhhhhhhccCCCceEEEEEE
Confidence 3446653 6688899999999999999999999888886 34456666553
No 172
>cd03418 GRX_GRXb_1_3_like Glutaredoxin (GRX) family, GRX bacterial class 1 and 3 (b_1_3)-like subfamily; composed of bacterial GRXs, approximately 10 kDa in size, and proteins containing a GRX or GRX-like domain. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins such as ribonucleotide reductase. It contains a redox active CXXC motif in a TRX fold and uses a similar dithiol mechanism employed by TRXs for intramolecular disulfide bond reduction of protein substrates. Unlike TRX, GRX has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. The flow of reducing equivalents in the GRX system goes from NADPH - GSH reductase - GSH - GRX - protein substrates. By altering the redox state of target proteins, GRX is involved in many cellular functions including DNA synthesis, signal transduction and the defense against oxidative stress. Different classes are known i
Probab=92.51 E-value=0.88 Score=31.34 Aligned_cols=52 Identities=13% Similarity=0.108 Sum_probs=33.9
Q ss_pred EEEEcCCCChhHHHHHHHHHHhHHHHHhCCCEEEEEcCCC-HHHHHHHHHHcCC--CCceee
Q 027527 101 VAFARHFGCVLCRKRADYLAAKKDVMDASGVALVLIGPGS-VEQARTFSEQTKF--KGEVYA 159 (222)
Q Consensus 101 VvF~R~~~Cp~C~~el~~L~~~~~~l~~~gv~lvaIs~~s-~~~i~~f~~~~~~--pfpil~ 159 (222)
|..|...+||.|.+-...|+ +.|+..-.+..+. ++..+++.+..+. .+|.+.
T Consensus 2 i~ly~~~~Cp~C~~ak~~L~-------~~~i~~~~i~i~~~~~~~~~~~~~~~~~~~vP~v~ 56 (75)
T cd03418 2 VEIYTKPNCPYCVRAKALLD-------KKGVDYEEIDVDGDPALREEMINRSGGRRTVPQIF 56 (75)
T ss_pred EEEEeCCCChHHHHHHHHHH-------HCCCcEEEEECCCCHHHHHHHHHHhCCCCccCEEE
Confidence 45778899999997655554 4566666666654 4566666666554 467443
No 173
>PRK10824 glutaredoxin-4; Provisional
Probab=92.50 E-value=0.51 Score=36.86 Aligned_cols=57 Identities=9% Similarity=0.189 Sum_probs=33.7
Q ss_pred EEEEEEcC----CCChhHHHHHHHHHHhHHHHHhCCCEEEEEcCC-CHHHHHHHHHHcCCC-Cc-eeecCC
Q 027527 99 AVVAFARH----FGCVLCRKRADYLAAKKDVMDASGVALVLIGPG-SVEQARTFSEQTKFK-GE-VYADPN 162 (222)
Q Consensus 99 vvVvF~R~----~~Cp~C~~el~~L~~~~~~l~~~gv~lvaIs~~-s~~~i~~f~~~~~~p-fp-il~Dpd 162 (222)
.||+|-.. .+||+|++-..-|.+. |+..-.|-.+ +++....+.+..+++ +| |+.|-+
T Consensus 16 ~Vvvf~Kg~~~~p~Cpyc~~ak~lL~~~-------~i~~~~idi~~d~~~~~~l~~~sg~~TVPQIFI~G~ 79 (115)
T PRK10824 16 PILLYMKGSPKLPSCGFSAQAVQALSAC-------GERFAYVDILQNPDIRAELPKYANWPTFPQLWVDGE 79 (115)
T ss_pred CEEEEECCCCCCCCCchHHHHHHHHHHc-------CCCceEEEecCCHHHHHHHHHHhCCCCCCeEEECCE
Confidence 46667766 5999999766655554 4333333333 344444555666776 66 776644
No 174
>cd03007 PDI_a_ERp29_N PDIa family, endoplasmic reticulum protein 29 (ERp29) subfamily; ERp29 is a ubiquitous ER-resident protein expressed in high levels in secretory cells. It forms homodimers and higher oligomers in vitro and in vivo. It contains a redox inactive TRX-like domain at the N-terminus, which is homologous to the redox active TRX (a) domains of PDI, and a C-terminal helical domain similar to the C-terminal domain of P5. The expression profile of ERp29 suggests a role in secretory protein production distinct from that of PDI. It has also been identified as a member of the thyroglobulin folding complex. The Drosophila homolog, Wind, is the product of windbeutel, an essential gene in the development of dorsal-ventral patterning. Wind is required for correct targeting of Pipe, a Golgi-resident type II transmembrane protein with homology to 2-O-sulfotransferase.
Probab=91.93 E-value=0.33 Score=37.97 Aligned_cols=63 Identities=8% Similarity=-0.038 Sum_probs=36.9
Q ss_pred CCCccCCCeEEEEEEcC--CCChhHHHHHHHHHHhHHHHHhC--CCEEEEEcCCCHH--HHHHHHHHcCCC---Cc
Q 027527 90 ISDLWKDRKAVVAFARH--FGCVLCRKRADYLAAKKDVMDAS--GVALVLIGPGSVE--QARTFSEQTKFK---GE 156 (222)
Q Consensus 90 Lsdl~~~~~vvVvF~R~--~~Cp~C~~el~~L~~~~~~l~~~--gv~lvaIs~~s~~--~i~~f~~~~~~p---fp 156 (222)
|.+..++.+.+||-|-+ .||. + ++...++.+++.+. .+.|--|.+++.. +-+..++++++. ||
T Consensus 11 F~~~v~~~~~vlV~F~A~~Pwc~---k-~~~~~~LA~e~~~aa~~v~lakVd~~d~~~~~~~~L~~~y~I~~~gyP 82 (116)
T cd03007 11 FYKVIPKFKYSLVKFDTAYPYGE---K-HEAFTRLAESSASATDDLLVAEVGIKDYGEKLNMELGERYKLDKESYP 82 (116)
T ss_pred HHHHHhcCCcEEEEEeCCCCCCC---C-hHHHHHHHHHHHhhcCceEEEEEecccccchhhHHHHHHhCCCcCCCC
Confidence 44555566777777778 6666 2 24444444444321 2666667775421 236788888885 77
No 175
>TIGR02181 GRX_bact Glutaredoxin, GrxC family. This family of glutaredoxins includes the E. coli protein GrxC (Grx3) which appears to have a secondary role in reducing ribonucleotide reductase (in the absence of GrxA) possibly indicating a role in the reduction of other protein disulfides.
Probab=91.88 E-value=0.53 Score=33.08 Aligned_cols=50 Identities=14% Similarity=0.197 Sum_probs=30.7
Q ss_pred EEEEcCCCChhHHHHHHHHHHhHHHHHhCCCEEEEEcCC-CHHHHHHHHHHcCCC-Cce
Q 027527 101 VAFARHFGCVLCRKRADYLAAKKDVMDASGVALVLIGPG-SVEQARTFSEQTKFK-GEV 157 (222)
Q Consensus 101 VvF~R~~~Cp~C~~el~~L~~~~~~l~~~gv~lvaIs~~-s~~~i~~f~~~~~~p-fpi 157 (222)
|..|...+||.|.+-...|++ .|+..--+..+ +++..+++.+.++.. +|.
T Consensus 1 v~ly~~~~Cp~C~~a~~~L~~-------~~i~~~~~di~~~~~~~~~~~~~~g~~~vP~ 52 (79)
T TIGR02181 1 VTIYTKPYCPYCTRAKALLSS-------KGVTFTEIRVDGDPALRDEMMQRSGRRTVPQ 52 (79)
T ss_pred CEEEecCCChhHHHHHHHHHH-------cCCCcEEEEecCCHHHHHHHHHHhCCCCcCE
Confidence 456788999999976666654 45444444443 345556676665533 563
No 176
>cd03419 GRX_GRXh_1_2_like Glutaredoxin (GRX) family, GRX human class 1 and 2 (h_1_2)-like subfamily; composed of proteins similar to human GRXs, approximately 10 kDa in size, and proteins containing a GRX or GRX-like domain. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins such as ribonucleotide reductase. It contains a redox active CXXC motif in a TRX fold and uses a similar dithiol mechanism employed by TRXs for intramolecular disulfide bond reduction of protein substrates. Unlike TRX, GRX has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. The flow of reducing equivalents in the GRX system goes from NADPH - GSH reductase - GSH - GRX - protein substrates. By altering the redox state of target proteins, GRX is involved in many cellular functions including DNA synthesis, signal transduction and the defense against oxidative stress. Different classes
Probab=91.86 E-value=0.82 Score=31.94 Aligned_cols=53 Identities=15% Similarity=0.117 Sum_probs=31.0
Q ss_pred EEEEcCCCChhHHHHHHHHHHhHHHHHhCCCEEEEEcCCCH-HHHH-HHHHHcCCC-Ccee
Q 027527 101 VAFARHFGCVLCRKRADYLAAKKDVMDASGVALVLIGPGSV-EQAR-TFSEQTKFK-GEVY 158 (222)
Q Consensus 101 VvF~R~~~Cp~C~~el~~L~~~~~~l~~~gv~lvaIs~~s~-~~i~-~f~~~~~~p-fpil 158 (222)
|++|-..|||+|.+-...|.++.. ....+=|..++. +..+ .+.+.++.+ +|.+
T Consensus 2 v~~y~~~~Cp~C~~~~~~l~~~~~-----~~~~~~v~~~~~~~~~~~~~~~~~g~~~~P~v 57 (82)
T cd03419 2 VVVFSKSYCPYCKRAKSLLKELGV-----KPAVVELDQHEDGSEIQDYLQELTGQRTVPNV 57 (82)
T ss_pred EEEEEcCCCHHHHHHHHHHHHcCC-----CcEEEEEeCCCChHHHHHHHHHHhCCCCCCeE
Confidence 466778999999986666666533 234555555433 3443 344545553 6643
No 177
>cd03023 DsbA_Com1_like DsbA family, Com1-like subfamily; composed of proteins similar to Com1, a 27-kDa outer membrane-associated immunoreactive protein originally found in both acute and chronic disease strains of the pathogenic bacteria Coxiella burnetti. It contains a CXXC motif, assumed to be imbedded in a DsbA-like structure. Its homology to DsbA suggests that the protein is a protein disulfide oxidoreductase. The role of such a protein in pathogenesis is unknown.
Probab=91.72 E-value=0.27 Score=38.10 Aligned_cols=31 Identities=16% Similarity=0.205 Sum_probs=25.3
Q ss_pred CCeEEEEEEcCCCChhHHHHHHHHHHhHHHH
Q 027527 96 DRKAVVAFARHFGCVLCRKRADYLAAKKDVM 126 (222)
Q Consensus 96 ~~~vvVvF~R~~~Cp~C~~el~~L~~~~~~l 126 (222)
+.++.|+.|..++||+|++.-+.+.++..+.
T Consensus 4 ~a~~~i~~f~D~~Cp~C~~~~~~l~~~~~~~ 34 (154)
T cd03023 4 NGDVTIVEFFDYNCGYCKKLAPELEKLLKED 34 (154)
T ss_pred CCCEEEEEEECCCChhHHHhhHHHHHHHHHC
Confidence 4567888888999999999988888766554
No 178
>PRK10638 glutaredoxin 3; Provisional
Probab=91.62 E-value=0.78 Score=32.81 Aligned_cols=51 Identities=14% Similarity=0.201 Sum_probs=32.5
Q ss_pred EEEEcCCCChhHHHHHHHHHHhHHHHHhCCCEEEEEcCCCH-HHHHHHHHHcCCC-Ccee
Q 027527 101 VAFARHFGCVLCRKRADYLAAKKDVMDASGVALVLIGPGSV-EQARTFSEQTKFK-GEVY 158 (222)
Q Consensus 101 VvF~R~~~Cp~C~~el~~L~~~~~~l~~~gv~lvaIs~~s~-~~i~~f~~~~~~p-fpil 158 (222)
|.+|-..+||+|++-...|. +.|+....+..+.. +..+++.+..+.. +|.+
T Consensus 4 v~ly~~~~Cp~C~~a~~~L~-------~~gi~y~~~dv~~~~~~~~~l~~~~g~~~vP~i 56 (83)
T PRK10638 4 VEIYTKATCPFCHRAKALLN-------SKGVSFQEIPIDGDAAKREEMIKRSGRTTVPQI 56 (83)
T ss_pred EEEEECCCChhHHHHHHHHH-------HcCCCcEEEECCCCHHHHHHHHHHhCCCCcCEE
Confidence 55677899999997655555 45555555555433 3445676666654 6754
No 179
>cd03029 GRX_hybridPRX5 Glutaredoxin (GRX) family, PRX5 hybrid subfamily; composed of hybrid proteins containing peroxiredoxin (PRX) and GRX domains, which is found in some pathogenic bacteria and cyanobacteria. PRXs are thiol-specific antioxidant (TSA) proteins that confer a protective antioxidant role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either thioredoxin, glutathione, trypanothione and AhpF. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins. PRX-GRX hybrid proteins from Haemophilus influenza and Neisseria meningitis exhibit GSH-dependent peroxidase activity. The flow of reducing equivalents in the catalytic cycle of the hybrid protein goes from NADPH - GSH reductase - GSH - GRX domain of hybrid - PRX domain of hybrid - peroxide substrate.
Probab=91.62 E-value=0.91 Score=31.37 Aligned_cols=50 Identities=20% Similarity=0.282 Sum_probs=30.2
Q ss_pred EEEEcCCCChhHHHHHHHHHHhHHHHHhCCCEEEEEcCCCHHHHHHHHHHcCC-CCce
Q 027527 101 VAFARHFGCVLCRKRADYLAAKKDVMDASGVALVLIGPGSVEQARTFSEQTKF-KGEV 157 (222)
Q Consensus 101 VvF~R~~~Cp~C~~el~~L~~~~~~l~~~gv~lvaIs~~s~~~i~~f~~~~~~-pfpi 157 (222)
|+.|-..|||+|.+-...|. +.|+....+..+.....+.+.+..+. .+|.
T Consensus 3 v~lys~~~Cp~C~~ak~~L~-------~~~i~~~~~~v~~~~~~~~~~~~~g~~~vP~ 53 (72)
T cd03029 3 VSLFTKPGCPFCARAKAALQ-------ENGISYEEIPLGKDITGRSLRAVTGAMTVPQ 53 (72)
T ss_pred EEEEECCCCHHHHHHHHHHH-------HcCCCcEEEECCCChhHHHHHHHhCCCCcCe
Confidence 45567899999998655554 45666655555544344445444443 3563
No 180
>KOG1731 consensus FAD-dependent sulfhydryl oxidase/quiescin and related proteins [Cell cycle control, cell division, chromosome partitioning]
Probab=91.56 E-value=0.075 Score=51.78 Aligned_cols=60 Identities=15% Similarity=0.110 Sum_probs=46.2
Q ss_pred CeEEEEEEcCCCChhHHHHHHHHHHhHHHHHh-CC-CEEEEEcCCCHHHHHHHHHHcCCC-Cce
Q 027527 97 RKAVVAFARHFGCVLCRKRADYLAAKKDVMDA-SG-VALVLIGPGSVEQARTFSEQTKFK-GEV 157 (222)
Q Consensus 97 ~~vvVvF~R~~~Cp~C~~el~~L~~~~~~l~~-~g-v~lvaIs~~s~~~i~~f~~~~~~p-fpi 157 (222)
++.-+|-|-+.||+.|+.+++.++++...+++ .+ +.|-+|.|-+ +.-.+.|.+++++ ||.
T Consensus 57 ~~~~lVEFy~swCGhCr~FAPtfk~~A~dl~~W~~vv~vaaVdCA~-~~N~~lCRef~V~~~Pt 119 (606)
T KOG1731|consen 57 RKAKLVEFYNSWCGHCRAFAPTFKKFAKDLEKWRPVVRVAAVDCAD-EENVKLCREFSVSGYPT 119 (606)
T ss_pred chhHHHHHHHhhhhhhhhcchHHHHHHHHHhcccceeEEEEeeccc-hhhhhhHhhcCCCCCce
Confidence 34677888899999999999999999888765 33 5566666664 4666788888887 564
No 181
>TIGR02189 GlrX-like_plant Glutaredoxin-like family. This family of glutaredoxin-like proteins is aparrently limited to plants. Multiple isoforms are found in A. thaliana and O.sativa.
Probab=91.42 E-value=0.42 Score=35.93 Aligned_cols=51 Identities=14% Similarity=0.161 Sum_probs=26.5
Q ss_pred EEcCCCChhHHHHHHHHHHhHHHHHhCCCEEEEEcCCCH----HHHHHHHHHcCCC-Cc-eeec
Q 027527 103 FARHFGCVLCRKRADYLAAKKDVMDASGVALVLIGPGSV----EQARTFSEQTKFK-GE-VYAD 160 (222)
Q Consensus 103 F~R~~~Cp~C~~el~~L~~~~~~l~~~gv~lvaIs~~s~----~~i~~f~~~~~~p-fp-il~D 160 (222)
.|-..|||+|++--..|. +.|+..-.|-.+.. +..+.+.+.++.+ +| |+.|
T Consensus 12 vysk~~Cp~C~~ak~~L~-------~~~i~~~~vdid~~~~~~~~~~~l~~~tg~~tvP~Vfi~ 68 (99)
T TIGR02189 12 IFSRSSCCMCHVVKRLLL-------TLGVNPAVHEIDKEPAGKDIENALSRLGCSPAVPAVFVG 68 (99)
T ss_pred EEECCCCHHHHHHHHHHH-------HcCCCCEEEEcCCCccHHHHHHHHHHhcCCCCcCeEEEC
Confidence 345699999996555443 44554334433321 2333454445543 66 4444
No 182
>cd02979 PHOX_C FAD-dependent Phenol hydoxylase (PHOX) family, C-terminal TRX-fold domain; composed of proteins similar to PHOX from the aerobic topsoil yeast Trichosporon cutaneum. PHOX is a flavoprotein monooxygenase that catalyzes the hydroxylation of phenol and simple phenol derivatives in the ortho position with the consumption of NADPH and oxygen. This is the first step in the biodegradation and detoxification of phenolic compounds. PHOX contains three domains. The substrate and FAD/NAD(P) binding sites are contained in the first two domains, which adopt a complicated folding pattern. The third or C-terminal domain contains a TRX fold and is involved in dimerization. The functional unit of PHOX is a dimer, although active tetramers of the recombinant enzyme can be isolated when overproduced in bacteria.
Probab=91.14 E-value=0.74 Score=37.94 Aligned_cols=113 Identities=19% Similarity=0.247 Sum_probs=71.6
Q ss_pred cCcCCCcEEec-CCCCeEeCCCccC--CCeEEEEEEcCCCChhHHHHHHHHHHhHHHHH-------------hCCCEEEE
Q 027527 72 KNLLDTVKVYD-VNGNAIPISDLWK--DRKAVVAFARHFGCVLCRKRADYLAAKKDVMD-------------ASGVALVL 135 (222)
Q Consensus 72 g~~apdf~L~D-~~G~~v~Lsdl~~--~~~vvVvF~R~~~Cp~C~~el~~L~~~~~~l~-------------~~gv~lva 135 (222)
|..+|++.+.. .||+++.|.+... ++.-+++|--..-++..+..+..+.+..+.-. ..=+.+++
T Consensus 1 G~R~~~a~V~r~aD~~p~~L~~~~~adGrfrI~vFagd~~~~~~~~~l~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (167)
T cd02979 1 GRRFPSAPVVRQADALPVHLGHRLPADGRFRIYVFAGDIAPAQQKSRLTQLCDALDSPDSFPLRYTPRGADPDSVFDVVT 80 (167)
T ss_pred CCcCCCceEEEecCCCCHhHhhhccCCCCEEEEEEcCCCCchhHHHHHHHHHHHHcCCcchHhhcCCCCCCCCCcEEEEE
Confidence 56788888887 6899999988773 45667778766666666666666665432211 12267888
Q ss_pred EcCCCHHHH---------HHHHHHcCCCC-ceeecCC------hHHHHHcCCccc--cceeeccchh
Q 027527 136 IGPGSVEQA---------RTFSEQTKFKG-EVYADPN------HSSYEALSFVSG--VLVTFTPKAG 184 (222)
Q Consensus 136 Is~~s~~~i---------~~f~~~~~~pf-pil~Dpd------~~lyk~lGl~~~--~~~~~~P~a~ 184 (222)
|......++ +.+.+.+++.+ .+|+|.+ ...|+.||+.+. ....+.|..+
T Consensus 81 I~~~~~~~~e~~dlP~~~~p~~~~~~~~~~~v~~d~~~~~~~~~~~~~~~gv~~~~g~vvvvRPDgy 147 (167)
T cd02979 81 IHAAPRREIELLDLPAVLRPFGEKKGWDYEKIYADDDSYHEGHGDAYEKYGIDPERGAVVVVRPDQY 147 (167)
T ss_pred EecCCccccchhhCcHhhcCCCCccccceeeEEecCccccCCcccHHHhhCCCCCCCCEEEECCCCe
Confidence 877643222 22223445554 4888865 679999999744 3444456543
No 183
>PHA03050 glutaredoxin; Provisional
Probab=91.12 E-value=1 Score=34.54 Aligned_cols=56 Identities=21% Similarity=0.148 Sum_probs=28.7
Q ss_pred EEEEcCCCChhHHHHHHHHHHhHHHHHhCCCEEEEEcCC--CHHHHHHHHHHcCC-CCcee
Q 027527 101 VAFARHFGCVLCRKRADYLAAKKDVMDASGVALVLIGPG--SVEQARTFSEQTKF-KGEVY 158 (222)
Q Consensus 101 VvF~R~~~Cp~C~~el~~L~~~~~~l~~~gv~lvaIs~~--s~~~i~~f~~~~~~-pfpil 158 (222)
|+.|-..|||+|.+--..|.+..-+ ...+.++=|... ..+..+++.+.++. ..|.+
T Consensus 15 V~vys~~~CPyC~~ak~~L~~~~i~--~~~~~~i~i~~~~~~~~~~~~l~~~tG~~tVP~I 73 (108)
T PHA03050 15 VTIFVKFTCPFCRNALDILNKFSFK--RGAYEIVDIKEFKPENELRDYFEQITGGRTVPRI 73 (108)
T ss_pred EEEEECCCChHHHHHHHHHHHcCCC--cCCcEEEECCCCCCCHHHHHHHHHHcCCCCcCEE
Confidence 4556789999998655554443210 112334444431 23444455555554 35633
No 184
>cd03035 ArsC_Yffb Arsenate Reductase (ArsC) family, Yffb subfamily; Yffb is an uncharacterized bacterial protein encoded by the yffb gene, related to the thioredoxin-fold arsenic reductases, ArsC. The structure of Yffb and the conservation of the catalytic cysteine suggest that it is likely to function as a glutathione (GSH)-dependent thiol reductase. ArsC catalyzes the reduction of arsenate [As(V)] to arsenite [As(III)], using reducing equivalents derived from GSH via glutaredoxin, through a single catalytic cysteine.
Probab=90.87 E-value=0.59 Score=35.59 Aligned_cols=63 Identities=14% Similarity=0.211 Sum_probs=46.4
Q ss_pred EEEEcCCCChhHHHHHHHHHHhHHHHHhCCCEEEEEc--CC--CHHHHHHHHHHcCCCCceeecCChHHHHHcCCc
Q 027527 101 VAFARHFGCVLCRKRADYLAAKKDVMDASGVALVLIG--PG--SVEQARTFSEQTKFKGEVYADPNHSSYEALSFV 172 (222)
Q Consensus 101 VvF~R~~~Cp~C~~el~~L~~~~~~l~~~gv~lvaIs--~~--s~~~i~~f~~~~~~pfpil~Dpd~~lyk~lGl~ 172 (222)
|.+|...+|+.|++-...|.+ .|+..-.+. .+ +.++++.+.++.+ ..-+.......|+.+++.
T Consensus 1 i~iy~~~~C~~crka~~~L~~-------~~i~~~~~di~~~p~s~~eL~~~l~~~g--~~~li~~~~~~yk~l~l~ 67 (105)
T cd03035 1 ITLYGIKNCDTVKKARKWLEA-------RGVAYTFHDYRKDGLDAATLERWLAKVG--WETLLNKRGTTWRKLDDA 67 (105)
T ss_pred CEEEeCCCCHHHHHHHHHHHH-------cCCCeEEEecccCCCCHHHHHHHHHHhC--hHHHHccCchHHHhCChh
Confidence 457889999999986665554 455544443 33 4589999999887 355667889999999987
No 185
>TIGR02183 GRXA Glutaredoxin, GrxA family. This model includes the E. coli glyutaredoxin GrxA which appears to have primary responsibility for the reduction of ribonucleotide reductase.
Probab=90.82 E-value=0.72 Score=33.51 Aligned_cols=58 Identities=10% Similarity=0.076 Sum_probs=34.4
Q ss_pred EEEEcCCCChhHHHHHHHHHHhHHHHHhCCCEEEEEcCC-CHHHHHHHHHHcC---CCCce-eec
Q 027527 101 VAFARHFGCVLCRKRADYLAAKKDVMDASGVALVLIGPG-SVEQARTFSEQTK---FKGEV-YAD 160 (222)
Q Consensus 101 VvF~R~~~Cp~C~~el~~L~~~~~~l~~~gv~lvaIs~~-s~~~i~~f~~~~~---~pfpi-l~D 160 (222)
|+.|-..|||+|.+-...|.++..+. .++...-|..+ +....+++.+.++ ...|. +.|
T Consensus 2 V~vys~~~Cp~C~~ak~~L~~~~~~~--~~i~~~~idi~~~~~~~~~l~~~~g~~~~tVP~ifi~ 64 (86)
T TIGR02183 2 VVIFGRPGCPYCVRAKQLAEKLAIER--ADFEFRYIDIHAEGISKADLEKTVGKPVETVPQIFVD 64 (86)
T ss_pred EEEEeCCCCccHHHHHHHHHHhCccc--CCCcEEEEECCCCHHHHHHHHHHhCCCCCCcCeEEEC
Confidence 56778899999998777776654332 24555555544 2223344555656 45674 444
No 186
>PF13778 DUF4174: Domain of unknown function (DUF4174)
Probab=90.75 E-value=1.1 Score=34.80 Aligned_cols=76 Identities=11% Similarity=0.174 Sum_probs=56.7
Q ss_pred CCCccCCCeEEEEEEcCCCChhHHHHHHHHHHhHHHHHhCCCEEEEEcCCCH---------HHHHHHHHHcCCC---Cc-
Q 027527 90 ISDLWKDRKAVVAFARHFGCVLCRKRADYLAAKKDVMDASGVALVLIGPGSV---------EQARTFSEQTKFK---GE- 156 (222)
Q Consensus 90 Lsdl~~~~~vvVvF~R~~~Cp~C~~el~~L~~~~~~l~~~gv~lvaIs~~s~---------~~i~~f~~~~~~p---fp- 156 (222)
|.++...+++||||-...-.+.=++++..|.+....|.++.+.++.|..+.. ..+....++++++ |.
T Consensus 3 L~~~~w~~R~lvv~aps~~d~~~~~q~~~L~~~~~~l~eRdi~v~~i~~~~~~~~~~~~~~~~~~~lr~~l~~~~~~f~~ 82 (118)
T PF13778_consen 3 LDQFRWKNRLLVVFAPSADDPRYQQQLEELQNNRCGLDERDIVVIVITGDGARSPGKPLSPEDIQALRKRLRIPPGGFTV 82 (118)
T ss_pred hhHhcCcCceEEEECCCCCCHHHHHHHHHHHhhhhccccCceEEEEEeCCccccccCcCCHHHHHHHHHHhCCCCCceEE
Confidence 4555556789999999999999999999999999999999999888854432 3445566666644 33
Q ss_pred eeecCChHH
Q 027527 157 VYADPNHSS 165 (222)
Q Consensus 157 il~Dpd~~l 165 (222)
++.+.|+.+
T Consensus 83 vLiGKDG~v 91 (118)
T PF13778_consen 83 VLIGKDGGV 91 (118)
T ss_pred EEEeCCCcE
Confidence 666766653
No 187
>KOG0908 consensus Thioredoxin-like protein [Posttranslational modification, protein turnover, chaperones]
Probab=90.33 E-value=0.3 Score=43.41 Aligned_cols=53 Identities=15% Similarity=0.207 Sum_probs=37.0
Q ss_pred CCeEEEEEEcCCCChhHHHHHHHHHHhHHHHHhCCCEEEEEcCCCHHHHHHHHHHcCC
Q 027527 96 DRKAVVAFARHFGCVLCRKRADYLAAKKDVMDASGVALVLIGPGSVEQARTFSEQTKF 153 (222)
Q Consensus 96 ~~~vvVvF~R~~~Cp~C~~el~~L~~~~~~l~~~gv~lvaIs~~s~~~i~~f~~~~~~ 153 (222)
+.+.|+|-|.+.||.+|.+-++-+..+..++ .|...+=|.. ++-+.-+..+++
T Consensus 20 g~k~v~Vdfta~wCGPCk~IaP~Fs~lankY--p~aVFlkVdV---d~c~~taa~~gV 72 (288)
T KOG0908|consen 20 GGKLVVVDFTASWCGPCKRIAPIFSDLANKY--PGAVFLKVDV---DECRGTAATNGV 72 (288)
T ss_pred CceEEEEEEEecccchHHhhhhHHHHhhhhC--cccEEEEEeH---HHhhchhhhcCc
Confidence 5689999999999999999999999988776 3444443332 333444444443
No 188
>PRK13344 spxA transcriptional regulator Spx; Reviewed
Probab=89.91 E-value=1.1 Score=35.56 Aligned_cols=66 Identities=15% Similarity=0.149 Sum_probs=50.2
Q ss_pred EEEEcCCCChhHHHHHHHHHHhHHHHHhCCCEEEEEcC--C--CHHHHHHHHHHcCCCCceeecCChHHHHHcCCcc
Q 027527 101 VAFARHFGCVLCRKRADYLAAKKDVMDASGVALVLIGP--G--SVEQARTFSEQTKFKGEVYADPNHSSYEALSFVS 173 (222)
Q Consensus 101 VvF~R~~~Cp~C~~el~~L~~~~~~l~~~gv~lvaIs~--~--s~~~i~~f~~~~~~pfpil~Dpd~~lyk~lGl~~ 173 (222)
|.+|-..+|+.|++-...| ++.|+..-.|.. + +.++++.+.+..+.++.-+.....+.|+.++...
T Consensus 2 i~iY~~~~C~~crkA~~~L-------~~~~i~~~~~d~~~~~~s~~eL~~~l~~~~~~~~~lin~~~~~~k~L~~~~ 71 (132)
T PRK13344 2 IKIYTISSCTSCKKAKTWL-------NAHQLSYKEQNLGKEPLTKEEILAILTKTENGIESIVSSKNRYAKALDCDI 71 (132)
T ss_pred EEEEeCCCCHHHHHHHHHH-------HHcCCCeEEEECCCCCCCHHHHHHHHHHhCCCHHHhhccCcHHHHhCCcch
Confidence 5577889999999855444 455666555533 3 4589999999999888777789999999999765
No 189
>cd03028 GRX_PICOT_like Glutaredoxin (GRX) family, PKC-interacting cousin of TRX (PICOT)-like subfamily; composed of PICOT and GRX-PICOT-like proteins. The non-PICOT members of this family contain only the GRX-like domain, whereas PICOT contains an N-terminal TRX-like domain followed by one to three GRX-like domains. It is interesting to note that PICOT from plants contain three repeats of the GRX-like domain, metazoan proteins (except for insect) have two repeats, while fungal sequences contain only one copy of the domain. PICOT is a protein that interacts with protein kinase C (PKC) theta, a calcium independent PKC isoform selectively expressed in skeletal muscle and T lymphocytes. PICOT inhibits the activation of c-Jun N-terminal kinase and the transcription factors, AP-1 and NF-kB, induced by PKC theta or T-cell activating stimuli. Both GRX and TRX domains of PICOT are required for its activity. Characterized non-PICOT members of this family include CXIP1, a CAX-interacting protein
Probab=89.84 E-value=1.1 Score=32.86 Aligned_cols=61 Identities=23% Similarity=0.303 Sum_probs=32.3
Q ss_pred CccCCCeEEEEEEcC----CCChhHHHHHHHHHHhHHHHHhCCCEEEEEcCCCHHHH-HHHHHHcCC-CCc-eeec
Q 027527 92 DLWKDRKAVVAFARH----FGCVLCRKRADYLAAKKDVMDASGVALVLIGPGSVEQA-RTFSEQTKF-KGE-VYAD 160 (222)
Q Consensus 92 dl~~~~~vvVvF~R~----~~Cp~C~~el~~L~~~~~~l~~~gv~lvaIs~~s~~~i-~~f~~~~~~-pfp-il~D 160 (222)
++.++.+ ||+|--. .|||+|.+-...|. +.|+..-.|..+...++ ++..+..+. .+| |+.|
T Consensus 3 ~~i~~~~-vvvf~k~~~~~~~Cp~C~~ak~~L~-------~~~i~y~~idv~~~~~~~~~l~~~~g~~tvP~vfi~ 70 (90)
T cd03028 3 KLIKENP-VVLFMKGTPEEPRCGFSRKVVQILN-------QLGVDFGTFDILEDEEVRQGLKEYSNWPTFPQLYVN 70 (90)
T ss_pred hhhccCC-EEEEEcCCCCCCCCcHHHHHHHHHH-------HcCCCeEEEEcCCCHHHHHHHHHHhCCCCCCEEEEC
Confidence 3444555 4555543 69999997555444 44555555554333334 444444454 366 4444
No 190
>cd03027 GRX_DEP Glutaredoxin (GRX) family, Dishevelled, Egl-10, and Pleckstrin (DEP) subfamily; composed of uncharacterized proteins containing a GRX domain and additional domains DEP and DUF547, both of which have unknown functions. GRX is a glutathione (GSH) dependent reductase containing a redox active CXXC motif in a TRX fold. It has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. By altering the redox state of target proteins, GRX is involved in many cellular functions.
Probab=89.60 E-value=2.4 Score=29.35 Aligned_cols=51 Identities=22% Similarity=0.264 Sum_probs=32.4
Q ss_pred EEEEcCCCChhHHHHHHHHHHhHHHHHhCCCEEEEEcCCC-HHHHHHHHHHcCC-CCcee
Q 027527 101 VAFARHFGCVLCRKRADYLAAKKDVMDASGVALVLIGPGS-VEQARTFSEQTKF-KGEVY 158 (222)
Q Consensus 101 VvF~R~~~Cp~C~~el~~L~~~~~~l~~~gv~lvaIs~~s-~~~i~~f~~~~~~-pfpil 158 (222)
|+.|-..+||.|++-...|. +.|+....+..+. ++..+++.+.++. .+|.+
T Consensus 3 v~ly~~~~C~~C~ka~~~L~-------~~gi~~~~~di~~~~~~~~el~~~~g~~~vP~v 55 (73)
T cd03027 3 VTIYSRLGCEDCTAVRLFLR-------EKGLPYVEINIDIFPERKAELEERTGSSVVPQI 55 (73)
T ss_pred EEEEecCCChhHHHHHHHHH-------HCCCceEEEECCCCHHHHHHHHHHhCCCCcCEE
Confidence 45667799999997655554 4677777776654 3444556555553 35643
No 191
>PRK08294 phenol 2-monooxygenase; Provisional
Probab=88.11 E-value=2 Score=42.59 Aligned_cols=118 Identities=10% Similarity=0.030 Sum_probs=76.7
Q ss_pred CCCccccCcCCCcEEec-CCCCeEeCCCcc--CCCeEEEEEEcCCCChhHHHHHHHHHHhHH--------HHHhCC----
Q 027527 66 SVSEDTKNLLDTVKVYD-VNGNAIPISDLW--KDRKAVVAFARHFGCVLCRKRADYLAAKKD--------VMDASG---- 130 (222)
Q Consensus 66 ~~~~~~g~~apdf~L~D-~~G~~v~Lsdl~--~~~~vvVvF~R~~~Cp~C~~el~~L~~~~~--------~l~~~g---- 130 (222)
.....+|..+|++.+.. .+++++.|.+.. .++..+++|-...-.+...+.+..+.+..+ .+...+
T Consensus 460 ~~~~~~G~r~~~~~v~~~~d~~~~~l~~~~~~~g~~~l~~f~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~ 539 (634)
T PRK08294 460 ATGFPIGKRFHSAPVIRLADAKPVHLGHAATADGRWRIYAFADAADPAGPGSALDALCEFLAESPDSPLRRFTPSGADID 539 (634)
T ss_pred ccCCCCceeCCCCceeeccCCCchhHhhhcccCCCEEEEEEcCCCCcchhHHHHHHHHHHHhhCccchHhhcCCCCCCCC
Confidence 34578999999999987 588888887655 456777777766666777776766666542 122222
Q ss_pred --CEEEEEcCCCH---------HHHHHHHHHcCC-CC-ceeecC--ChHHHHHcCCccccce--eeccch
Q 027527 131 --VALVLIGPGSV---------EQARTFSEQTKF-KG-EVYADP--NHSSYEALSFVSGVLV--TFTPKA 183 (222)
Q Consensus 131 --v~lvaIs~~s~---------~~i~~f~~~~~~-pf-pil~Dp--d~~lyk~lGl~~~~~~--~~~P~a 183 (222)
+.++.|..... +..+.|...+++ ++ .+|+|. ....|+.||+.+.... .+.|..
T Consensus 540 ~~~~~~~i~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gi~~~~g~~vvvRPD~ 609 (634)
T PRK08294 540 AVIDVRAIFQQPHRELDLEDVPALLLPRKGRFGLTDYEKVFCADLSGADIFDLRGIDRDRGAVVVVRPDQ 609 (634)
T ss_pred cEEEEEEEecCCCCccchhhCcHhhCCcccccCccchhheecCCCchhhHHHhhCCCCCceeEEEECCCC
Confidence 66777766532 333445556666 55 478873 3579999999766443 345653
No 192
>PF05768 DUF836: Glutaredoxin-like domain (DUF836); InterPro: IPR008554 Glutaredoxins [, , ], also known as thioltransferases (disulphide reductases, are small proteins of approximately one hundred amino-acid residues which utilise glutathione and NADPH as cofactors. Oxidized glutathione is regenerated by glutathione reductase. Together these components compose the glutathione system []. Glutaredoxin functions as an electron carrier in the glutathione-dependent synthesis of deoxyribonucleotides by the enzyme ribonucleotide reductase. Like thioredoxin, which functions in a similar way, glutaredoxin possesses an active centre disulphide bond []. It exists in either a reduced or an oxidized form where the two cysteine residues are linked in an intramolecular disulphide bond. Glutaredoxin has been sequenced in a variety of species. On the basis of extensive sequence similarity, it has been proposed [] that Vaccinia virus protein O2L is most probably a glutaredoxin. Finally, it must be noted that Bacteriophage T4 thioredoxin seems also to be evolutionary related. In position 5 of the pattern T4 thioredoxin has Val instead of Pro. This family contains several viral glutaredoxins, and many related bacterial and eukaryotic proteins of unknown function. The best characterised member of this family is G4L (P68460 from SWISSPROT) from Vaccinia virus (strain Western Reserve/WR) (VACV), which is necessary for virion morphogenesis and virus replication []. This is a cytomplasmic protein which functions as a shuttle in a redox pathway between membrane-associated E10R and L1R or F9L []. ; PDB: 1TTZ_A 1XPV_A 2FGX_A 2G2Q_C 1WJK_A.
Probab=87.57 E-value=1.7 Score=31.22 Aligned_cols=56 Identities=14% Similarity=0.185 Sum_probs=39.4
Q ss_pred EEEEcCCCChhHHHHHHHHHHhHHHHHhCCCEEEEEcCCCHHHHHHHHHHcCCCCceeecCC
Q 027527 101 VAFARHFGCVLCRKRADYLAAKKDVMDASGVALVLIGPGSVEQARTFSEQTKFKGEVYADPN 162 (222)
Q Consensus 101 VvF~R~~~Cp~C~~el~~L~~~~~~l~~~gv~lvaIs~~s~~~i~~f~~~~~~pfpil~Dpd 162 (222)
|++|-..+|+.|.+-...|.+... +.++.+..|..++.+. +.++++...|++.-.+
T Consensus 2 l~l~~k~~C~LC~~a~~~L~~~~~---~~~~~l~~vDI~~d~~---l~~~Y~~~IPVl~~~~ 57 (81)
T PF05768_consen 2 LTLYTKPGCHLCDEAKEILEEVAA---EFPFELEEVDIDEDPE---LFEKYGYRIPVLHIDG 57 (81)
T ss_dssp EEEEE-SSSHHHHHHHHHHHHCCT---TSTCEEEEEETTTTHH---HHHHSCTSTSEEEETT
T ss_pred EEEEcCCCCChHHHHHHHHHHHHh---hcCceEEEEECCCCHH---HHHHhcCCCCEEEEcC
Confidence 678899999999976666665433 4558888888875444 6668888888665444
No 193
>TIGR03759 conj_TIGR03759 integrating conjugative element protein, PFL_4693 family. Members of this protein family, such as model protein PFL_4693 from Pseudomonas fluorescens Pf-5, belong to extended genomic regions that appear to be spread by conjugative transfer. Most members have a predicted N-terminal signal sequence. The function is unknown.
Probab=86.82 E-value=2.7 Score=35.94 Aligned_cols=69 Identities=22% Similarity=0.447 Sum_probs=52.5
Q ss_pred CeEEEEEEcCCCChhHHHHHHHHHHhHHHHHhCCCEEEEEc-CCCHHHHHHHHHHcCCCCc------eeecCChHHHHHc
Q 027527 97 RKAVVAFARHFGCVLCRKRADYLAAKKDVMDASGVALVLIG-PGSVEQARTFSEQTKFKGE------VYADPNHSSYEAL 169 (222)
Q Consensus 97 ~~vvVvF~R~~~Cp~C~~el~~L~~~~~~l~~~gv~lvaIs-~~s~~~i~~f~~~~~~pfp------il~Dpd~~lyk~l 169 (222)
..-+.+|+. ..|+.|-..+..+.. ....+.|..|+ .++.+.++.|+.++++|-. |-...|.--+..|
T Consensus 109 ~~rlalFvk-d~C~~C~~~~~~l~a-----~~~~~Diylvgs~~dD~~Ir~WA~~~~Idp~~V~~~~ITLNHD~G~w~~l 182 (200)
T TIGR03759 109 GGRLALFVK-DDCVACDARVQRLLA-----DNAPLDLYLVGSQGDDERIRQWANRHQIDPAKVRSRQITLNHDNGRWLQL 182 (200)
T ss_pred CCeEEEEeC-CCChHHHHHHHHHhc-----CCCceeEEEecCCCCHHHHHHHHHHcCCCHHHeecCeeEEecCcchHHHc
Confidence 345777887 899999988887744 35568888887 5677899999999999853 4455666667777
Q ss_pred CC
Q 027527 170 SF 171 (222)
Q Consensus 170 Gl 171 (222)
|+
T Consensus 183 g~ 184 (200)
T TIGR03759 183 GL 184 (200)
T ss_pred cC
Confidence 76
No 194
>KOG0190 consensus Protein disulfide isomerase (prolyl 4-hydroxylase beta subunit) [Posttranslational modification, protein turnover, chaperones]
Probab=86.75 E-value=0.86 Score=44.01 Aligned_cols=33 Identities=15% Similarity=0.088 Sum_probs=28.6
Q ss_pred CeEEEEEEcCCCChhHHHHHHHHHHhHHHHHhC
Q 027527 97 RKAVVAFARHFGCVLCRKRADYLAAKKDVMDAS 129 (222)
Q Consensus 97 ~~vvVvF~R~~~Cp~C~~el~~L~~~~~~l~~~ 129 (222)
++=|+|-|.+.||++|.+-.+-+.++.+.+++.
T Consensus 384 ~KdVLvEfyAPWCgHCk~laP~~eeLAe~~~~~ 416 (493)
T KOG0190|consen 384 GKDVLVEFYAPWCGHCKALAPIYEELAEKYKDD 416 (493)
T ss_pred ccceEEEEcCcccchhhhhhhHHHHHHHHhcCC
Confidence 456777888999999999999999999998774
No 195
>KOG3425 consensus Uncharacterized conserved protein [Function unknown]
Probab=86.70 E-value=1.8 Score=34.35 Aligned_cols=45 Identities=16% Similarity=0.164 Sum_probs=31.5
Q ss_pred CCeEEEEEEcC-------CCChhHHHHHHHHHHhHHHHHhCCCEEEEEcCCCH
Q 027527 96 DRKAVVAFARH-------FGCVLCRKRADYLAAKKDVMDASGVALVLIGPGSV 141 (222)
Q Consensus 96 ~~~vvVvF~R~-------~~Cp~C~~el~~L~~~~~~l~~~gv~lvaIs~~s~ 141 (222)
++.+.|.|.-. +|||.|+.--+-+.+..... ..++.+|.|..|+.
T Consensus 25 ~~~ifvlF~gskd~~tGqSWCPdCV~AEPvi~~alk~a-p~~~~~v~v~VG~r 76 (128)
T KOG3425|consen 25 GKTIFVLFLGSKDDTTGQSWCPDCVAAEPVINEALKHA-PEDVHFVHVYVGNR 76 (128)
T ss_pred CceEEEEEecccCCCCCCcCCchHHHhhHHHHHHHHhC-CCceEEEEEEecCC
Confidence 34455555533 59999999888877766632 46788888888874
No 196
>COG0695 GrxC Glutaredoxin and related proteins [Posttranslational modification, protein turnover, chaperones]
Probab=85.92 E-value=2.9 Score=30.14 Aligned_cols=54 Identities=20% Similarity=0.281 Sum_probs=32.9
Q ss_pred EEEEcCCCChhHHHHHHHHHHhHHHHHhCCCEEEE--EcCCCHHHHHHHHHHcC--CCCceeecC
Q 027527 101 VAFARHFGCVLCRKRADYLAAKKDVMDASGVALVL--IGPGSVEQARTFSEQTK--FKGEVYADP 161 (222)
Q Consensus 101 VvF~R~~~Cp~C~~el~~L~~~~~~l~~~gv~lva--Is~~s~~~i~~f~~~~~--~pfpil~Dp 161 (222)
|+.|-..+||+|.+--.. |+++|+...- |..++.+..+++.++.. -.+|.+...
T Consensus 3 v~iyt~~~CPyC~~ak~~-------L~~~g~~~~~i~~~~~~~~~~~~~~~~~~g~~tvP~I~i~ 60 (80)
T COG0695 3 VTIYTKPGCPYCKRAKRL-------LDRKGVDYEEIDVDDDEPEEAREMVKRGKGQRTVPQIFIG 60 (80)
T ss_pred EEEEECCCCchHHHHHHH-------HHHcCCCcEEEEecCCcHHHHHHHHHHhCCCCCcCEEEEC
Confidence 445566789999964433 3466666444 44444457777777763 457744433
No 197
>KOG0191 consensus Thioredoxin/protein disulfide isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=85.48 E-value=1.5 Score=40.55 Aligned_cols=57 Identities=14% Similarity=0.050 Sum_probs=41.3
Q ss_pred eEEEEEEcCCCChhHHHHHHHHHHhHHHHH-hCCCEEEEEcCCCHHHHHHHHHHcCCC
Q 027527 98 KAVVAFARHFGCVLCRKRADYLAAKKDVMD-ASGVALVLIGPGSVEQARTFSEQTKFK 154 (222)
Q Consensus 98 ~vvVvF~R~~~Cp~C~~el~~L~~~~~~l~-~~gv~lvaIs~~s~~~i~~f~~~~~~p 154 (222)
...++.|-+.||++|+..++.+.++...++ ..++.+..+..+....+.....-.++|
T Consensus 163 ~~~lv~f~aPwc~~ck~l~~~~~~~a~~~~~~~~v~~~~~d~~~~~~~~~~~~v~~~P 220 (383)
T KOG0191|consen 163 ADWLVEFYAPWCGHCKKLAPEWEKLAKLLKSKENVELGKIDATVHKSLASRLEVRGYP 220 (383)
T ss_pred cceEEEEeccccHHhhhcChHHHHHHHHhccCcceEEEeeccchHHHHhhhhcccCCc
Confidence 345566679999999999999999998887 477888888877334444444444444
No 198
>cd03034 ArsC_ArsC Arsenate Reductase (ArsC) family, ArsC subfamily; arsenic reductases similar to that encoded by arsC on the R733 plasmid of Escherichia coli. E. coli ArsC catalyzes the reduction of arsenate [As(V)] to arsenite [As(III)], the first step in the detoxification of arsenic, using reducing equivalents derived from glutathione (GSH) via glutaredoxin (GRX). ArsC contains a single catalytic cysteine, within a thioredoxin fold, that forms a covalent thiolate-As(V) intermediate, which is reduced by GRX through a mixed GSH-arsenate intermediate. This family of predominantly bacterial enzymes is unrelated to two other families of arsenate reductases which show similarity to low-molecular-weight acid phosphatases and phosphotyrosyl phosphatases.
Probab=84.99 E-value=2.4 Score=32.45 Aligned_cols=66 Identities=11% Similarity=0.231 Sum_probs=50.7
Q ss_pred EEEEcCCCChhHHHHHHHHHHhHHHHHhCCCEEEEEc--CC--CHHHHHHHHHHcCCCCceeecCChHHHHHcCCcc
Q 027527 101 VAFARHFGCVLCRKRADYLAAKKDVMDASGVALVLIG--PG--SVEQARTFSEQTKFKGEVYADPNHSSYEALSFVS 173 (222)
Q Consensus 101 VvF~R~~~Cp~C~~el~~L~~~~~~l~~~gv~lvaIs--~~--s~~~i~~f~~~~~~pfpil~Dpd~~lyk~lGl~~ 173 (222)
|.+|-...|.-|++-..+|.+ +|+.+..+. .+ +.++++.+.+..+.+..-+.......|+.+++..
T Consensus 1 i~iy~~~~C~t~rkA~~~L~~-------~~i~~~~~di~~~~~t~~el~~~l~~~~~~~~~lin~~~~~y~~l~~~~ 70 (112)
T cd03034 1 ITIYHNPRCSKSRNALALLEE-------AGIEPEIVEYLKTPPTAAELRELLAKLGISPRDLLRTKEAPYKELGLAD 70 (112)
T ss_pred CEEEECCCCHHHHHHHHHHHH-------CCCCeEEEecccCCcCHHHHHHHHHHcCCCHHHHHhcCCchHHHcCCCc
Confidence 357788999999987666554 455554443 33 4589999999999888777789999999999875
No 199
>PRK10026 arsenate reductase; Provisional
Probab=84.86 E-value=3 Score=33.74 Aligned_cols=67 Identities=12% Similarity=0.183 Sum_probs=51.1
Q ss_pred EEEEEcCCCChhHHHHHHHHHHhHHHHHhCCCEEEEE--cCC--CHHHHHHHHHHcCCCCceeecCChHHHHHcCCcc
Q 027527 100 VVAFARHFGCVLCRKRADYLAAKKDVMDASGVALVLI--GPG--SVEQARTFSEQTKFKGEVYADPNHSSYEALSFVS 173 (222)
Q Consensus 100 vVvF~R~~~Cp~C~~el~~L~~~~~~l~~~gv~lvaI--s~~--s~~~i~~f~~~~~~pfpil~Dpd~~lyk~lGl~~ 173 (222)
-|.+|....|.-|++-..+|.+. |+.+..+ -.+ +.++++.+.+..+++..-+.......|+.+++..
T Consensus 3 ~i~iY~~p~Cst~RKA~~wL~~~-------gi~~~~~d~~~~ppt~~eL~~~l~~~g~~~~~lint~~~~yr~L~~~~ 73 (141)
T PRK10026 3 NITIYHNPACGTSRNTLEMIRNS-------GTEPTIIHYLETPPTRDELVKLIADMGISVRALLRKNVEPYEELGLAE 73 (141)
T ss_pred EEEEEeCCCCHHHHHHHHHHHHC-------CCCcEEEeeeCCCcCHHHHHHHHHhCCCCHHHHHHcCCchHHHcCCCc
Confidence 36688899999999988877655 4443333 344 4489999999999876666678889999999865
No 200
>cd02991 UAS_ETEA UAS family, ETEA subfamily; composed of proteins similar to human ETEA protein, the translation product of a highly expressed gene in the T-cells and eosinophils of atopic dermatitis patients compared with those of normal individuals. ETEA shows homology to Fas-associated factor 1 (FAF1); both containing UAS and UBX (ubiquitin-associated) domains. Compared to FAF1, however, ETEA lacks the ubiquitin-associated UBA domain and a nuclear targeting domain. The function of ETEA is still unknown. A yeast two-hybrid assay showed that it can interact with Fas. Because of its homology to FAF1, it is postulated that ETEA could be involved in modulating Fas-mediated apoptosis of T-cells and eosinophils of atopic dermatitis patients, making them more resistant to apoptosis.
Probab=83.98 E-value=3.1 Score=32.22 Aligned_cols=89 Identities=6% Similarity=0.031 Sum_probs=46.5
Q ss_pred CCeEEEEEEcCC----CChhHHHHHH--HHHHhHHHHHhCCCEEEEEcCCCHH--HHHHHHHHcCCCCceeecCChHHHH
Q 027527 96 DRKAVVAFARHF----GCVLCRKRAD--YLAAKKDVMDASGVALVLIGPGSVE--QARTFSEQTKFKGEVYADPNHSSYE 167 (222)
Q Consensus 96 ~~~vvVvF~R~~----~Cp~C~~el~--~L~~~~~~l~~~gv~lvaIs~~s~~--~i~~f~~~~~~pfpil~Dpd~~lyk 167 (222)
+.|.++|.+... ||.+|++-+. ++.+. + +.+..+++....+.+ ++.....-..+|+-++.++...
T Consensus 16 e~K~llVylhs~~~~~~~~fc~~~l~~~~v~~~---l-n~~fv~w~~dv~~~eg~~la~~l~~~~~P~~~~l~~~~~--- 88 (116)
T cd02991 16 ELRFLLVYLHGDDHQDTDEFCRNTLCAPEVIEY---I-NTRMLFWACSVAKPEGYRVSQALRERTYPFLAMIMLKDN--- 88 (116)
T ss_pred hCCEEEEEEeCCCCccHHHHHHHHcCCHHHHHH---H-HcCEEEEEEecCChHHHHHHHHhCCCCCCEEEEEEecCC---
Confidence 456777777777 8888865442 22222 2 346666666666664 2333334445666667655543
Q ss_pred HcCCccccceeeccchhHHHHHHH
Q 027527 168 ALSFVSGVLVTFTPKAGLKIIQSY 191 (222)
Q Consensus 168 ~lGl~~~~~~~~~P~a~~~~l~~~ 191 (222)
.+.+.....+...|..+...+..+
T Consensus 89 ~~~vv~~i~G~~~~~~ll~~L~~~ 112 (116)
T cd02991 89 RMTIVGRLEGLIQPEDLINRLTFI 112 (116)
T ss_pred ceEEEEEEeCCCCHHHHHHHHHHH
Confidence 222222233344455555555433
No 201
>COG4232 Thiol:disulfide interchange protein [Posttranslational modification, protein turnover, chaperones / Energy production and conversion]
Probab=83.80 E-value=0.74 Score=45.10 Aligned_cols=75 Identities=13% Similarity=0.174 Sum_probs=50.3
Q ss_pred CCCccCCCe--EEEEEEcCCCChhHHHHHHH-HHHhHHHHHhCCCEEEEEcCC-CHHHHHHHHHHcCC---CCceeecCC
Q 027527 90 ISDLWKDRK--AVVAFARHFGCVLCRKRADY-LAAKKDVMDASGVALVLIGPG-SVEQARTFSEQTKF---KGEVYADPN 162 (222)
Q Consensus 90 Lsdl~~~~~--vvVvF~R~~~Cp~C~~el~~-L~~~~~~l~~~gv~lvaIs~~-s~~~i~~f~~~~~~---pfpil~Dpd 162 (222)
|.+.+++.+ .|++.|-+.||.-|++.-+. +.+...+++..|+.++=+..- +..+++++.++++. |.-++.|++
T Consensus 465 L~~~la~~~~~pVmlDfyAdWCvtCK~~e~~tfsd~~v~~~~~~~vlLqaDvT~~~p~~~~lLk~~~~~G~P~~~ff~~~ 544 (569)
T COG4232 465 LDQALAEAKAKPVMLDFYADWCVTCKENEKYTFSDPQVQQALQDVVLLQADVTANDPAITALLKRLGVFGVPTYLFFGPQ 544 (569)
T ss_pred HHHHHHhCCCCcEEEeeehhHHHHhHhhhhhccCcHHHHHhcCCeEEEEeeecCCCHHHHHHHHHcCCCCCCEEEEECCC
Confidence 344444433 88999999999999986553 334555667778877666443 33567777777764 445888877
Q ss_pred hH
Q 027527 163 HS 164 (222)
Q Consensus 163 ~~ 164 (222)
++
T Consensus 545 g~ 546 (569)
T COG4232 545 GS 546 (569)
T ss_pred CC
Confidence 65
No 202
>cd03019 DsbA_DsbA DsbA family, DsbA subfamily; DsbA is a monomeric thiol disulfide oxidoreductase protein containing a redox active CXXC motif imbedded in a TRX fold. It is involved in the oxidative protein folding pathway in prokaryotes, and is the strongest thiol oxidant known, due to the unusual stability of the thiolate anion form of the first cysteine in the CXXC motif. The highly unstable oxidized form of DsbA directly donates disulfide bonds to reduced proteins secreted into the bacterial periplasm. This rapid and unidirectional process helps to catalyze the folding of newly-synthesized polypeptides. To regain catalytic activity, reduced DsbA is then reoxidized by the membrane protein DsbB, which generates its disulfides from oxidized quinones, which in turn are reoxidized by the electron transport chain.
Probab=83.75 E-value=2.5 Score=33.77 Aligned_cols=38 Identities=21% Similarity=0.229 Sum_probs=29.6
Q ss_pred CCeEEEEEEcCCCChhHHHHHHHHHHhHHHHHhCCCEEE
Q 027527 96 DRKAVVAFARHFGCVLCRKRADYLAAKKDVMDASGVALV 134 (222)
Q Consensus 96 ~~~vvVvF~R~~~Cp~C~~el~~L~~~~~~l~~~gv~lv 134 (222)
+.++.|+.|-.+.||+|...-+.+.++..+. ..++.+.
T Consensus 14 ~~~~~i~~f~D~~Cp~C~~~~~~~~~~~~~~-~~~v~~~ 51 (178)
T cd03019 14 SGKPEVIEFFSYGCPHCYNFEPILEAWVKKL-PKDVKFE 51 (178)
T ss_pred CCCcEEEEEECCCCcchhhhhHHHHHHHHhC-CCCceEE
Confidence 4577788888999999999999998887776 3345544
No 203
>PTZ00062 glutaredoxin; Provisional
Probab=82.75 E-value=1.7 Score=37.18 Aligned_cols=64 Identities=17% Similarity=0.234 Sum_probs=36.5
Q ss_pred CCCccCCCeEEEEEEcC----CCChhHHHHHHHHHHhHHHHHhCCCEEEEEcCCCHHHHH-HHHHHcCCC-Cc-eeecC
Q 027527 90 ISDLWKDRKAVVAFARH----FGCVLCRKRADYLAAKKDVMDASGVALVLIGPGSVEQAR-TFSEQTKFK-GE-VYADP 161 (222)
Q Consensus 90 Lsdl~~~~~vvVvF~R~----~~Cp~C~~el~~L~~~~~~l~~~gv~lvaIs~~s~~~i~-~f~~~~~~p-fp-il~Dp 161 (222)
+.++...++ |++|-.+ .+||+|++-...|+ +.|+....+..++.+.++ ...+..+++ +| |+.+-
T Consensus 106 v~~li~~~~-Vvvf~Kg~~~~p~C~~C~~~k~~L~-------~~~i~y~~~DI~~d~~~~~~l~~~sg~~TvPqVfI~G 176 (204)
T PTZ00062 106 IERLIRNHK-ILLFMKGSKTFPFCRFSNAVVNMLN-------SSGVKYETYNIFEDPDLREELKVYSNWPTYPQLYVNG 176 (204)
T ss_pred HHHHHhcCC-EEEEEccCCCCCCChhHHHHHHHHH-------HcCCCEEEEEcCCCHHHHHHHHHHhCCCCCCeEEECC
Confidence 334444444 6667665 59999997655555 445555555554334444 444555665 66 66653
No 204
>cd03020 DsbA_DsbC_DsbG DsbA family, DsbC and DsbG subfamily; V-shaped homodimeric proteins containing a redox active CXXC motif imbedded in a TRX fold. They function as protein disulfide isomerases and chaperones in the bacterial periplasm to correct non-native disulfide bonds formed by DsbA and prevent aggregation of incorrectly folded proteins. DsbC and DsbG are kept in their reduced state by the cytoplasmic membrane protein DsbD, which utilizes the TRX/TRX reductase system in the cytosol as a source of reducing equivalents. DsbG differ from DsbC in that it has a more limited substrate specificity, and it may preferentially act later in the folding process to catalyze disulfide rearrangements in folded or partially folded proteins. Also included in the alignment is the predicted protein TrbB, whose gene was sequenced from the enterohemorrhagic E. coli type IV pilus gene cluster, which is required for efficient plasmid transfer.
Probab=82.25 E-value=2.4 Score=35.28 Aligned_cols=26 Identities=31% Similarity=0.402 Sum_probs=21.2
Q ss_pred CCeEEEEEEcCCCChhHHHHHHHHHH
Q 027527 96 DRKAVVAFARHFGCVLCRKRADYLAA 121 (222)
Q Consensus 96 ~~~vvVvF~R~~~Cp~C~~el~~L~~ 121 (222)
+.+..|+.|-...||+|++....+.+
T Consensus 76 ~~~~~i~~f~D~~Cp~C~~~~~~l~~ 101 (197)
T cd03020 76 NGKRVVYVFTDPDCPYCRKLEKELKP 101 (197)
T ss_pred CCCEEEEEEECCCCccHHHHHHHHhh
Confidence 34667777788999999998888876
No 205
>TIGR00014 arsC arsenate reductase (glutaredoxin). composed of two polypeptides, the products of the arsA and arsB genes. The pump alone produces resistance to arsenite and antimonite. This protein, ArsC, catalyzes the reduction of arsenate to arsenite, and thus extends resistance to include arsenate.
Probab=82.08 E-value=4.2 Score=31.23 Aligned_cols=66 Identities=11% Similarity=0.179 Sum_probs=48.9
Q ss_pred EEEEcCCCChhHHHHHHHHHHhHHHHHhCCCEEEEEc--CC--CHHHHHHHHHHcCCCC-ceeecCChHHHHHcCCcc
Q 027527 101 VAFARHFGCVLCRKRADYLAAKKDVMDASGVALVLIG--PG--SVEQARTFSEQTKFKG-EVYADPNHSSYEALSFVS 173 (222)
Q Consensus 101 VvF~R~~~Cp~C~~el~~L~~~~~~l~~~gv~lvaIs--~~--s~~~i~~f~~~~~~pf-pil~Dpd~~lyk~lGl~~ 173 (222)
|.+|-...|.-|++-...|.+ .|+.+..+. .. +.++++.+.+..+++. .=+.......|+.+++..
T Consensus 1 i~iy~~~~C~t~rkA~~~L~~-------~~i~~~~~di~~~p~t~~el~~~l~~~g~~~~~~lin~~~~~~~~l~~~~ 71 (114)
T TIGR00014 1 VTIYHNPRCSKSRNTLALLED-------KGIEPEVVKYLKNPPTKSELEAIFAKLGLTVAREMIRTKEALYKELGLSD 71 (114)
T ss_pred CEEEECCCCHHHHHHHHHHHH-------CCCCeEEEeccCCCcCHHHHHHHHHHcCCchHHHHHhcCCcHHHHcCCCc
Confidence 357888999999987766654 455544443 33 4489999999988764 336789999999999875
No 206
>PRK10877 protein disulfide isomerase II DsbC; Provisional
Probab=81.86 E-value=3.1 Score=36.04 Aligned_cols=37 Identities=19% Similarity=0.412 Sum_probs=26.9
Q ss_pred CCeEEEEEEcCCCChhHHHHHHHHHHhHHHHHhCCCEEEEE
Q 027527 96 DRKAVVAFARHFGCVLCRKRADYLAAKKDVMDASGVALVLI 136 (222)
Q Consensus 96 ~~~vvVvF~R~~~Cp~C~~el~~L~~~~~~l~~~gv~lvaI 136 (222)
+.+..|+.|-..-||+|++...++.++ .+.|+.+..+
T Consensus 106 ~~k~~I~vFtDp~CpyCkkl~~~l~~~----~~~~v~v~~~ 142 (232)
T PRK10877 106 QEKHVITVFTDITCGYCHKLHEQMKDY----NALGITVRYL 142 (232)
T ss_pred CCCEEEEEEECCCChHHHHHHHHHHHH----hcCCeEEEEE
Confidence 345677778899999999988777654 3456776554
No 207
>TIGR00995 3a0901s06TIC22 chloroplast protein import component, Tic22 family. Two families of proteins are involved in the chloroplast envelope import appartus.They are the three proteins of the outer membrane (TOC) and four proteins in the inner membrane (TIC). This family is specific for the Tic22 protein.
Probab=81.29 E-value=2.3 Score=38.04 Aligned_cols=84 Identities=15% Similarity=0.079 Sum_probs=53.7
Q ss_pred cccCcCCCcEEecCCCCeEeCCCccCCCeEEEEEE-cCCCChhHHHHHHHHHHhHHHHHhCCCEEEEEcCCCHHHHHHHH
Q 027527 70 DTKNLLDTVKVYDVNGNAIPISDLWKDRKAVVAFA-RHFGCVLCRKRADYLAAKKDVMDASGVALVLIGPGSVEQARTFS 148 (222)
Q Consensus 70 ~~g~~apdf~L~D~~G~~v~Lsdl~~~~~vvVvF~-R~~~Cp~C~~el~~L~~~~~~l~~~gv~lvaIs~~s~~~i~~f~ 148 (222)
+..+.+|=|++.|.+|+.+-.+.- .++++.-+|+ |. -...+.+.+|++..+++ +.+++|+.|+-|..-++ .
T Consensus 77 ekL~~VPVFtItn~~G~pvl~s~~-~~~~~~gvf~s~q---edA~afL~~lk~~~p~l-~~~~kV~pvsL~~vYkl---~ 148 (270)
T TIGR00995 77 KILAGTSVFTVSNAQNEFVLASDN-DGEKSIGLLCFRQ---EDAEAFLAQLRKRKPEV-GSQAKVVPITLDQVYKL---K 148 (270)
T ss_pred HHhcCCceEEEEcCCCCeEEEECC-CCCceEEEEECCH---HHHHHHHHHHHhhCccc-cCCceEEEEEHHHHHHH---h
Confidence 455568889999999999888754 2334443433 21 12334444444445555 46799999988876544 2
Q ss_pred HHcCCCCceeecCC
Q 027527 149 EQTKFKGEVYADPN 162 (222)
Q Consensus 149 ~~~~~pfpil~Dpd 162 (222)
+.++.|.++.|+.
T Consensus 149 -~e~l~F~fiP~~~ 161 (270)
T TIGR00995 149 -VEGIGFRFLPDPA 161 (270)
T ss_pred -hcCccEEEeCCHH
Confidence 3358888888765
No 208
>COG2179 Predicted hydrolase of the HAD superfamily [General function prediction only]
Probab=80.40 E-value=3.8 Score=34.35 Aligned_cols=40 Identities=13% Similarity=0.118 Sum_probs=36.5
Q ss_pred HHHHHHhHHHHHhCCCEEEEEcCCCHHHHHHHHHHcCCCC
Q 027527 116 ADYLAAKKDVMDASGVALVLIGPGSVEQARTFSEQTKFKG 155 (222)
Q Consensus 116 l~~L~~~~~~l~~~gv~lvaIs~~s~~~i~~f~~~~~~pf 155 (222)
.+++.+..++++++|+.++++|..+...++.|.+..+++|
T Consensus 48 tpe~~~W~~e~k~~gi~v~vvSNn~e~RV~~~~~~l~v~f 87 (175)
T COG2179 48 TPELRAWLAELKEAGIKVVVVSNNKESRVARAAEKLGVPF 87 (175)
T ss_pred CHHHHHHHHHHHhcCCEEEEEeCCCHHHHHhhhhhcCCce
Confidence 4688888999999999999999999999999999988887
No 209
>PF13192 Thioredoxin_3: Thioredoxin domain; PDB: 1ZYP_B 1ZYN_A 1HYU_A 1ILO_A 1J08_F 2YWM_B 2AYT_B 2HLS_B 1A8L_A 2K8S_B ....
Probab=75.68 E-value=9.6 Score=26.73 Aligned_cols=48 Identities=17% Similarity=0.325 Sum_probs=29.1
Q ss_pred CCCChhHHHHHHHHHHhHHHHHhCCCEEEEEcCCCHHHHHHHHHHcCCC-Cc-eeec
Q 027527 106 HFGCVLCRKRADYLAAKKDVMDASGVALVLIGPGSVEQARTFSEQTKFK-GE-VYAD 160 (222)
Q Consensus 106 ~~~Cp~C~~el~~L~~~~~~l~~~gv~lvaIs~~s~~~i~~f~~~~~~p-fp-il~D 160 (222)
..+||.|.+-...+++..+++ |+.+-.+...+.+++ +++++. .| ++.|
T Consensus 7 ~~~C~~C~~~~~~~~~~~~~~---~i~~ei~~~~~~~~~----~~ygv~~vPalvIn 56 (76)
T PF13192_consen 7 SPGCPYCPELVQLLKEAAEEL---GIEVEIIDIEDFEEI----EKYGVMSVPALVIN 56 (76)
T ss_dssp CSSCTTHHHHHHHHHHHHHHT---TEEEEEEETTTHHHH----HHTT-SSSSEEEET
T ss_pred CCCCCCcHHHHHHHHHHHHhc---CCeEEEEEccCHHHH----HHcCCCCCCEEEEC
Confidence 677999997666666666554 455555555555444 444654 34 5665
No 210
>PRK11657 dsbG disulfide isomerase/thiol-disulfide oxidase; Provisional
Probab=75.35 E-value=6.2 Score=34.59 Aligned_cols=29 Identities=17% Similarity=0.200 Sum_probs=22.8
Q ss_pred CCeEEEEEEcCCCChhHHHHHHHHHHhHH
Q 027527 96 DRKAVVAFARHFGCVLCRKRADYLAAKKD 124 (222)
Q Consensus 96 ~~~vvVvF~R~~~Cp~C~~el~~L~~~~~ 124 (222)
+.+.+|+.|-.+-||+|++.-.++.++.+
T Consensus 116 ~ak~~I~vFtDp~CpyC~kl~~~l~~~~~ 144 (251)
T PRK11657 116 DAPRIVYVFADPNCPYCKQFWQQARPWVD 144 (251)
T ss_pred CCCeEEEEEECCCChhHHHHHHHHHHHhh
Confidence 45667777889999999998888776543
No 211
>PF03190 Thioredox_DsbH: Protein of unknown function, DUF255; InterPro: IPR004879 This is a group of uncharacterised proteins.; PDB: 3IRA_A.
Probab=74.73 E-value=8 Score=32.09 Aligned_cols=70 Identities=9% Similarity=0.068 Sum_probs=35.7
Q ss_pred CeEEEEEEcCCCChhHHHHHHHHHHh--HHHHHhCCCEEEEEcCCCHHHHHH-HH-------HHcCCCCceeecCChHHH
Q 027527 97 RKAVVAFARHFGCVLCRKRADYLAAK--KDVMDASGVALVLIGPGSVEQART-FS-------EQTKFKGEVYADPNHSSY 166 (222)
Q Consensus 97 ~~vvVvF~R~~~Cp~C~~el~~L~~~--~~~l~~~gv~lvaIs~~s~~~i~~-f~-------~~~~~pfpil~Dpd~~ly 166 (222)
.+.|++.+-..||..|.....+-=+- ..++-.....-|-|..+....+.. |. ..-|+|..++.+|+++.+
T Consensus 37 ~KpIfl~ig~~~C~wChvM~~esf~d~eVa~~lN~~FI~VkvDree~Pdid~~y~~~~~~~~~~gGwPl~vfltPdg~p~ 116 (163)
T PF03190_consen 37 NKPIFLSIGYSWCHWCHVMERESFSDPEVAEYLNRNFIPVKVDREERPDIDKIYMNAVQAMSGSGGWPLTVFLTPDGKPF 116 (163)
T ss_dssp T--EEEEEE-TT-HHHHHHHHHTTT-HHHHHHHHHH-EEEEEETTT-HHHHHHHHHHHHHHHS---SSEEEEE-TTS-EE
T ss_pred CCcEEEEEEecCCcchhhhcccCcCCHHHHHHHhCCEEEEEeccccCccHHHHHHHHHHHhcCCCCCCceEEECCCCCee
Confidence 56788888899999999766522221 112222334445566665444433 32 346899999999998754
No 212
>cd02972 DsbA_family DsbA family; consists of DsbA and DsbA-like proteins, including DsbC, DsbG, glutathione (GSH) S-transferase kappa (GSTK), 2-hydroxychromene-2-carboxylate (HCCA) isomerase, an oxidoreductase (FrnE) presumed to be involved in frenolicin biosynthesis, a 27-kDa outer membrane protein, and similar proteins. Members of this family contain a redox active CXXC motif (except GSTK and HCCA isomerase) imbedded in a TRX fold, and an alpha helical insert of about 75 residues (shorter in DsbC and DsbG) relative to TRX. DsbA is involved in the oxidative protein folding pathway in prokaryotes, catalyzing disulfide bond formation of proteins secreted into the bacterial periplasm. DsbC and DsbG function as protein disulfide isomerases and chaperones to correct non-native disulfide bonds formed by DsbA and prevent aggregation of incorrectly folded proteins.
Probab=74.24 E-value=4.7 Score=27.99 Aligned_cols=35 Identities=20% Similarity=0.094 Sum_probs=25.0
Q ss_pred EEEEcCCCChhHHHHHHHHHHhHHHHHhCCCEEEEE
Q 027527 101 VAFARHFGCVLCRKRADYLAAKKDVMDASGVALVLI 136 (222)
Q Consensus 101 VvF~R~~~Cp~C~~el~~L~~~~~~l~~~gv~lvaI 136 (222)
|.+|....||.|...-+.+.+... ....++++.-+
T Consensus 1 i~~f~d~~Cp~C~~~~~~l~~~~~-~~~~~~~~~~~ 35 (98)
T cd02972 1 IVEFFDPLCPYCYLFEPELEKLLY-ADDGGVRVVYR 35 (98)
T ss_pred CeEEECCCCHhHHhhhHHHHHHHh-hcCCcEEEEEe
Confidence 456788999999999999988763 23445555443
No 213
>COG1393 ArsC Arsenate reductase and related proteins, glutaredoxin family [Inorganic ion transport and metabolism]
Probab=73.94 E-value=6.3 Score=30.73 Aligned_cols=66 Identities=17% Similarity=0.259 Sum_probs=51.2
Q ss_pred EEEEEcCCCChhHHHHHHHHHHhHHHHHhCCCEE--EEEcCC--CHHHHHHHHHHcCCCCceeecCChHHHHHcCCc
Q 027527 100 VVAFARHFGCVLCRKRADYLAAKKDVMDASGVAL--VLIGPG--SVEQARTFSEQTKFKGEVYADPNHSSYEALSFV 172 (222)
Q Consensus 100 vVvF~R~~~Cp~C~~el~~L~~~~~~l~~~gv~l--vaIs~~--s~~~i~~f~~~~~~pfpil~Dpd~~lyk~lGl~ 172 (222)
.|.+|...-|--|++-..+|. ++|+.. +-+..+ +.++++++.++.+.++.-+.....+.|++||..
T Consensus 2 ~itiy~~p~C~t~rka~~~L~-------~~gi~~~~~~y~~~~~s~~eL~~~l~~~g~~~~~li~t~~~~~r~L~~~ 71 (117)
T COG1393 2 MITIYGNPNCSTCRKALAWLE-------EHGIEYTFIDYLKTPPSREELKKILSKLGDGVEELINTRGTTYRELNLD 71 (117)
T ss_pred eEEEEeCCCChHHHHHHHHHH-------HcCCCcEEEEeecCCCCHHHHHHHHHHcCccHHHHHHhccchHHHcCCc
Confidence 367888899999997666554 556554 333333 458999999999999988889999999999943
No 214
>cd01427 HAD_like Haloacid dehalogenase-like hydrolases. The haloacid dehalogenase-like (HAD) superfamily includes L-2-haloacid dehalogenase, epoxide hydrolase, phosphoserine phosphatase, phosphomannomutase, phosphoglycolate phosphatase, P-type ATPase, and many others, all of which use a nucleophilic aspartate in their phosphoryl transfer reaction. All members possess a highly conserved alpha/beta core domain, and many also possess a small cap domain, the fold and function of which is variable. Members of this superfamily are sometimes referred to as belonging to the DDDD superfamily of phosphohydrolases.
Probab=72.67 E-value=9.1 Score=27.92 Aligned_cols=38 Identities=13% Similarity=0.111 Sum_probs=32.2
Q ss_pred HHHHHHhHHHHHhCCCEEEEEcCCCHHHHHHHHHHcCC
Q 027527 116 ADYLAAKKDVMDASGVALVLIGPGSVEQARTFSEQTKF 153 (222)
Q Consensus 116 l~~L~~~~~~l~~~gv~lvaIs~~s~~~i~~f~~~~~~ 153 (222)
.+.+.+..+++++.|+.++.++....+.++.+.++.++
T Consensus 26 ~~~~~~~l~~l~~~g~~i~ivS~~~~~~~~~~~~~~~~ 63 (139)
T cd01427 26 YPGVKEALKELKEKGIKLALATNKSRREVLELLEELGL 63 (139)
T ss_pred CcCHHHHHHHHHHCCCeEEEEeCchHHHHHHHHHHcCC
Confidence 45666777888888999999999999999999999887
No 215
>PRK13601 putative L7Ae-like ribosomal protein; Provisional
Probab=72.25 E-value=13 Score=27.21 Aligned_cols=53 Identities=17% Similarity=0.179 Sum_probs=40.8
Q ss_pred hHHHHHhCCCEEEEEcCCCH----HHHHHHHHHcCCCCceeecCChHHHHHcCCcccc
Q 027527 122 KKDVMDASGVALVLIGPGSV----EQARTFSEQTKFKGEVYADPNHSSYEALSFVSGV 175 (222)
Q Consensus 122 ~~~~l~~~gv~lvaIs~~s~----~~i~~f~~~~~~pfpil~Dpd~~lyk~lGl~~~~ 175 (222)
....++...+++|.|..|-. ..+..+++++++|+ ++.....++-++.|+..+.
T Consensus 16 vlkaIk~gkakLViiA~Da~~~~~k~i~~~c~~~~Vpv-~~~~t~~eLG~A~G~~v~a 72 (82)
T PRK13601 16 TLKAITNCNVLQVYIAKDAEEHVTKKIKELCEEKSIKI-VYIDTMKELGVMCGIDVGA 72 (82)
T ss_pred HHHHHHcCCeeEEEEeCCCCHHHHHHHHHHHHhCCCCE-EEeCCHHHHHHHHCCccCe
Confidence 34455666788898888854 34555689999999 7888889999999998764
No 216
>PRK10853 putative reductase; Provisional
Probab=71.49 E-value=9.2 Score=29.71 Aligned_cols=64 Identities=14% Similarity=0.238 Sum_probs=48.2
Q ss_pred EEEEcCCCChhHHHHHHHHHHhHHHHHhCCCEEEEEc--CC--CHHHHHHHHHHcCCCCceeecCChHHHHHcCCcc
Q 027527 101 VAFARHFGCVLCRKRADYLAAKKDVMDASGVALVLIG--PG--SVEQARTFSEQTKFKGEVYADPNHSSYEALSFVS 173 (222)
Q Consensus 101 VvF~R~~~Cp~C~~el~~L~~~~~~l~~~gv~lvaIs--~~--s~~~i~~f~~~~~~pfpil~Dpd~~lyk~lGl~~ 173 (222)
|.+|-...|.-|++-...|.+ +|+.+..+. .+ +.++++++.++.|++ -+.......|+.++...
T Consensus 2 i~iy~~~~C~t~rkA~~~L~~-------~~i~~~~~d~~k~p~s~~eL~~~l~~~g~~--~l~n~~~~~~r~L~~~~ 69 (118)
T PRK10853 2 VTLYGIKNCDTIKKARRWLEA-------QGIDYRFHDYRVDGLDSELLQGFIDELGWE--ALLNTRGTTWRKLDETQ 69 (118)
T ss_pred EEEEcCCCCHHHHHHHHHHHH-------cCCCcEEeehccCCcCHHHHHHHHHHcCHH--HHHhcCCchHHhCCHhH
Confidence 568889999999987777664 455555553 22 458999999987754 47789999999998764
No 217
>cd03041 GST_N_2GST_N GST_N family, 2 repeats of the N-terminal domain of soluble GSTs (2 GST_N) subfamily; composed of uncharacterized proteins. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins, and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains.
Probab=71.39 E-value=21 Score=24.79 Aligned_cols=53 Identities=21% Similarity=0.256 Sum_probs=31.5
Q ss_pred EEEEcCCCChhHHHHHHHHHHhHHHHHhCCC--EEEEEcCCCHHHHHHHHHHcCC-CCceeecC
Q 027527 101 VAFARHFGCVLCRKRADYLAAKKDVMDASGV--ALVLIGPGSVEQARTFSEQTKF-KGEVYADP 161 (222)
Q Consensus 101 VvF~R~~~Cp~C~~el~~L~~~~~~l~~~gv--~lvaIs~~s~~~i~~f~~~~~~-pfpil~Dp 161 (222)
+..+...+||+|++-...|. ++|+ +++-|..+. ....+|.+..+. ..|++.|.
T Consensus 2 ~~Ly~~~~sp~~~kv~~~L~-------~~gi~y~~~~v~~~~-~~~~~~~~~~p~~~vP~l~~~ 57 (77)
T cd03041 2 LELYEFEGSPFCRLVREVLT-------ELELDVILYPCPKGS-PKRDKFLEKGGKVQVPYLVDP 57 (77)
T ss_pred ceEecCCCCchHHHHHHHHH-------HcCCcEEEEECCCCh-HHHHHHHHhCCCCcccEEEeC
Confidence 45677789999997555554 4444 344444332 234566665553 36888775
No 218
>KOG3414 consensus Component of the U4/U6.U5 snRNP/mitosis protein DIM1 [RNA processing and modification; Cell cycle control, cell division, chromosome partitioning]
Probab=71.01 E-value=41 Score=27.12 Aligned_cols=54 Identities=13% Similarity=0.088 Sum_probs=37.9
Q ss_pred CeEEEEEEcCCCChhHHHHHHHHHHhHHHHHhCCCEEEEEcCCCHHHHHHHHHHcCCC
Q 027527 97 RKAVVAFARHFGCVLCRKRADYLAAKKDVMDASGVALVLIGPGSVEQARTFSEQTKFK 154 (222)
Q Consensus 97 ~~vvVvF~R~~~Cp~C~~el~~L~~~~~~l~~~gv~lvaIs~~s~~~i~~f~~~~~~p 154 (222)
.++||+-|-+.|.|.|-..=.-|++..+++.. -++|..|..+ ++..|.+-+++.
T Consensus 23 ~rlvViRFGr~~Dp~C~~mD~~L~~i~~~vsn-fa~Iylvdid---eV~~~~~~~~l~ 76 (142)
T KOG3414|consen 23 ERLVVIRFGRDWDPTCMKMDELLSSIAEDVSN-FAVIYLVDID---EVPDFVKMYELY 76 (142)
T ss_pred ceEEEEEecCCCCchHhhHHHHHHHHHHHHhh-ceEEEEEecc---hhhhhhhhhccc
Confidence 58999999999999999877777777776632 3555566665 455555544544
No 219
>cd03060 GST_N_Omega_like GST_N family, Omega-like subfamily; composed of uncharacterized proteins with similarity to class Omega GSTs. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. Class Omega GSTs show little or no GSH-conjugating activity towards standard GST substrates. Instead, they catalyze the GSH dependent reduction of protein disulfides, dehydroascorbate and monomethylarsonate, activities which are more characteristic of glutaredoxins. Like Omega enzymes, proteins in this subfamily contain a conserved cysteine equivalent to the first cysteine in the CXXC motif of glutaredoxins, which is a r
Probab=70.97 E-value=8.4 Score=26.26 Aligned_cols=54 Identities=11% Similarity=-0.061 Sum_probs=30.9
Q ss_pred EEEcCCCChhHHHHHHHHHHhHHHHHhCCCEEEEEcCCCHHHHHHHHHHcCC-CCceeecCC
Q 027527 102 AFARHFGCVLCRKRADYLAAKKDVMDASGVALVLIGPGSVEQARTFSEQTKF-KGEVYADPN 162 (222)
Q Consensus 102 vF~R~~~Cp~C~~el~~L~~~~~~l~~~gv~lvaIs~~s~~~i~~f~~~~~~-pfpil~Dpd 162 (222)
++|...+||+|++-...|.+.-- ..+++-|...+. ..+|.+.... ..|++.|.+
T Consensus 2 ~ly~~~~~p~~~rv~~~L~~~gl-----~~e~~~v~~~~~--~~~~~~~np~~~vP~L~~~~ 56 (71)
T cd03060 2 ILYSFRRCPYAMRARMALLLAGI-----TVELREVELKNK--PAEMLAASPKGTVPVLVLGN 56 (71)
T ss_pred EEEecCCCcHHHHHHHHHHHcCC-----CcEEEEeCCCCC--CHHHHHHCCCCCCCEEEECC
Confidence 35677899999976555554322 234555544322 2455554444 368887763
No 220
>PRK06184 hypothetical protein; Provisional
Probab=69.88 E-value=17 Score=34.53 Aligned_cols=87 Identities=16% Similarity=0.295 Sum_probs=60.2
Q ss_pred CccccCcCCCcEEecCCCCeEeCCCccCC-CeEEEEEEcCCCChhHHHHHHHHHHhHHHHHhCCCEEEEEcCCCHHHHHH
Q 027527 68 SEDTKNLLDTVKVYDVNGNAIPISDLWKD-RKAVVAFARHFGCVLCRKRADYLAAKKDVMDASGVALVLIGPGSVEQART 146 (222)
Q Consensus 68 ~~~~g~~apdf~L~D~~G~~v~Lsdl~~~-~~vvVvF~R~~~Cp~C~~el~~L~~~~~~l~~~gv~lvaIs~~s~~~i~~ 146 (222)
....|..+|+..|.+.+|+..++-|++.+ +.++|.|--..+ ...+..|+.++.|+...
T Consensus 385 ~~~~G~r~p~~~~~~~~~~~~~l~d~~~~~~~~ll~~~~~~~---------------~~~~~~~~~~~~~~~~~------ 443 (502)
T PRK06184 385 GLRAGDRAPDAPLLGAAGQPTRLFDLFRGPHWTLLAFGAGAA---------------AILARRGLRIHRVGDAA------ 443 (502)
T ss_pred CCCCcCCCCCchhccCCCceeeHHHhhCCCcEEEEEecCCch---------------hhhhhcCceEEEecccC------
Confidence 35679999999998878888888898864 556665422111 01135578888776542
Q ss_pred HHHHcCCCCceeecCChHHHHHcCCccccceeeccc
Q 027527 147 FSEQTKFKGEVYADPNHSSYEALSFVSGVLVTFTPK 182 (222)
Q Consensus 147 f~~~~~~pfpil~Dpd~~lyk~lGl~~~~~~~~~P~ 182 (222)
....+.|+++.+.+.|++...-...+.|.
T Consensus 444 -------~~~~~~d~~g~~~~~~~~~~~~~~lvRPD 472 (502)
T PRK06184 444 -------EGGDLVDDAGHFRDAYGLTGGTLVLVRPD 472 (502)
T ss_pred -------CCCceeCCCccHHHHhcCCCCcEEEECCC
Confidence 23357899999999999987766566664
No 221
>PF03960 ArsC: ArsC family; InterPro: IPR006660 Several bacterial taxon have a chromosomal resistance system, encoded by the ars operon, for the detoxification of arsenate, arsenite, and antimonite []. This system transports arsenite and antimonite out of the cell. The pump is composed of two polypeptides, the products of the arsA and arsB genes. This two-subunit enzyme produces resistance to arsenite and antimonite. Arsenate, however, must first be reduced to arsenite before it is extruded. A third gene, arsC, expands the substrate specificity to allow for arsenate pumping and resistance. ArsC is an approximately 150-residue arsenate reductase that uses reduced glutathione (GSH) to convert arsenate to arsenite with a redox active cysteine residue in the active site. ArsC forms an active quaternary complex with GSH, arsenate, and glutaredoxin 1 (Grx1). The three ligands must be present simultaneously for reduction to occur []. The arsC family also comprises the Spx proteins which are GRAM-positive bacterial transcription factors that regulate the transcription of multiple genes in response to disulphide stress []. The arsC protein structure has been solved []. It belongs to the thioredoxin superfamily fold which is defined by a beta-sheet core surrounded by alpha-helices. The active cysteine residue of ArsC is located in the loop between the first beta-strand and the first helix, which is also conserved in the Spx protein and its homologues.; PDB: 2KOK_A 1SK1_A 1SK2_A 1JZW_A 1J9B_A 1S3C_A 1SD8_A 1SD9_A 1I9D_A 1SK0_A ....
Probab=69.83 E-value=20 Score=27.00 Aligned_cols=58 Identities=21% Similarity=0.361 Sum_probs=42.6
Q ss_pred CCCChhHHHHHHHHHHhHHHHHhCCCEEEEEcCC----CHHHHHHHHHHcCCCCceeecCChHHHHHcC
Q 027527 106 HFGCVLCRKRADYLAAKKDVMDASGVALVLIGPG----SVEQARTFSEQTKFKGEVYADPNHSSYEALS 170 (222)
Q Consensus 106 ~~~Cp~C~~el~~L~~~~~~l~~~gv~lvaIs~~----s~~~i~~f~~~~~~pfpil~Dpd~~lyk~lG 170 (222)
...|.-|++-...|. +.|+.+..|..- +.+++.++.+..+..+.-+.+.....|+.++
T Consensus 3 ~~~C~t~rka~~~L~-------~~gi~~~~~d~~k~p~s~~el~~~l~~~~~~~~~lin~~~~~~k~l~ 64 (110)
T PF03960_consen 3 NPNCSTCRKALKWLE-------ENGIEYEFIDYKKEPLSREELRELLSKLGNGPDDLINTRSKTYKELG 64 (110)
T ss_dssp -TT-HHHHHHHHHHH-------HTT--EEEEETTTS---HHHHHHHHHHHTSSGGGGB-TTSHHHHHTT
T ss_pred CCCCHHHHHHHHHHH-------HcCCCeEeehhhhCCCCHHHHHHHHHHhcccHHHHhcCccchHhhhh
Confidence 467999997666554 577777777653 3479999999999998888899999999999
No 222
>COG1651 DsbG Protein-disulfide isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=68.87 E-value=11 Score=32.17 Aligned_cols=49 Identities=14% Similarity=0.137 Sum_probs=36.5
Q ss_pred cEEecCCCCeEeCCCccCCCeEEEEEEcCCCChhHHHHHHHHHHhHHHHHh
Q 027527 78 VKVYDVNGNAIPISDLWKDRKAVVAFARHFGCVLCRKRADYLAAKKDVMDA 128 (222)
Q Consensus 78 f~L~D~~G~~v~Lsdl~~~~~vvVvF~R~~~Cp~C~~el~~L~~~~~~l~~ 128 (222)
......+++.+.+++. ..++.++.|...-||+|.+.++.+.+.+-...+
T Consensus 67 ~~~~~~~~~~~~~G~~--~~~v~v~~f~d~~Cp~C~~~~~~l~~~~i~~~~ 115 (244)
T COG1651 67 VLYLTPDGKDVVLGNP--YAPVTVVEFFDYTCPYCKEAFPELKKKYIDDGK 115 (244)
T ss_pred eeeecCCCCcccccCC--CCCceEEEEecCcCccHHHHHHHHHHHhhhcCC
Confidence 3444567777777776 347889999999999999988888885544333
No 223
>cd00570 GST_N_family Glutathione S-transferase (GST) family, N-terminal domain; a large, diverse group of cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. In addition, GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. This family, also referred to as soluble GSTs, is the largest family of GSH transferases and is only distantly related to the mitochondrial GSTs (GSTK subfamily, a member of the DsbA family). Soluble GSTs bear no structural similarity to microsomal GSTs (MAPEG family) and display additional activities unique to their group, such as catalyzing thiolysis, reduction and isomerization of certain compounds. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical doma
Probab=68.36 E-value=8.5 Score=24.68 Aligned_cols=57 Identities=19% Similarity=0.048 Sum_probs=30.8
Q ss_pred EEcCCCChhHHHHHHHHHHhHHHHHhCCCEEEEEcCCCHHHHHHHHHHcCCC-CceeecCChHH
Q 027527 103 FARHFGCVLCRKRADYLAAKKDVMDASGVALVLIGPGSVEQARTFSEQTKFK-GEVYADPNHSS 165 (222)
Q Consensus 103 F~R~~~Cp~C~~el~~L~~~~~~l~~~gv~lvaIs~~s~~~i~~f~~~~~~p-fpil~Dpd~~l 165 (222)
+|-..+||.|++-...|+... ...+++-+..++.... ++.+..+.. .|++.+.+..+
T Consensus 3 ly~~~~~~~~~~~~~~l~~~~-----i~~~~~~~~~~~~~~~-~~~~~~~~~~~P~l~~~~~~~ 60 (71)
T cd00570 3 LYYFPGSPRSLRVRLALEEKG-----LPYELVPVDLGEGEQE-EFLALNPLGKVPVLEDGGLVL 60 (71)
T ss_pred EEeCCCCccHHHHHHHHHHcC-----CCcEEEEeCCCCCCCH-HHHhcCCCCCCCEEEECCEEE
Confidence 455677999996555554442 2244555554433222 455444433 57777765443
No 224
>PRK12759 bifunctional gluaredoxin/ribonucleoside-diphosphate reductase subunit beta; Provisional
Probab=67.49 E-value=11 Score=35.57 Aligned_cols=41 Identities=15% Similarity=0.246 Sum_probs=26.2
Q ss_pred EEEEcCCCChhHHHHHHHHHHhHHHHHhCCCEEEEEcCCCHHHHHHHH
Q 027527 101 VAFARHFGCVLCRKRADYLAAKKDVMDASGVALVLIGPGSVEQARTFS 148 (222)
Q Consensus 101 VvF~R~~~Cp~C~~el~~L~~~~~~l~~~gv~lvaIs~~s~~~i~~f~ 148 (222)
|+.|-.+|||.|.+--. -|++.|+..-.|..+......++.
T Consensus 4 V~vys~~~Cp~C~~aK~-------~L~~~gi~~~~idi~~~~~~~~~~ 44 (410)
T PRK12759 4 VRIYTKTNCPFCDLAKS-------WFGANDIPFTQISLDDDVKRAEFY 44 (410)
T ss_pred EEEEeCCCCHHHHHHHH-------HHHHCCCCeEEEECCCChhHHHHH
Confidence 55678999999996443 345567776666665444434433
No 225
>KOG0912 consensus Thiol-disulfide isomerase and thioredoxin [Posttranslational modification, protein turnover, chaperones; Energy production and conversion]
Probab=67.21 E-value=15 Score=33.81 Aligned_cols=32 Identities=6% Similarity=-0.037 Sum_probs=27.8
Q ss_pred CeEEEEEEcCCCChhHHHHHHHHHHhHHHHHh
Q 027527 97 RKAVVAFARHFGCVLCRKRADYLAAKKDVMDA 128 (222)
Q Consensus 97 ~~vvVvF~R~~~Cp~C~~el~~L~~~~~~l~~ 128 (222)
.-+|++.|-+.||++.|.-.+-+.+..+++++
T Consensus 13 ~elvfv~FyAdWCrFSq~L~piF~EAa~~~~~ 44 (375)
T KOG0912|consen 13 NELVFVNFYADWCRFSQMLKPIFEEAAAKFKQ 44 (375)
T ss_pred ceEEeeeeehhhchHHHHHhHHHHHHHHHHHH
Confidence 45788999999999999999999998877754
No 226
>cd03033 ArsC_15kD Arsenate Reductase (ArsC) family, 15kD protein subfamily; composed of proteins of unknown function with similarity to thioredoxin-fold arsenic reductases, ArsC. It is encoded by an ORF present in a gene cluster associated with nitrogen fixation that also encodes dinitrogenase reductase ADP-ribosyltransferase (DRAT) and dinitrogenase reductase activating glycohydrolase (DRAG). ArsC catalyzes the reduction of arsenate [As(V)] to arsenite [As(III)], using reducing equivalents derived from glutathione via glutaredoxin, through a single catalytic cysteine.
Probab=67.21 E-value=18 Score=27.88 Aligned_cols=64 Identities=17% Similarity=0.251 Sum_probs=44.7
Q ss_pred EEEEcCCCChhHHHHHHHHHHhHHHHHhCCCEEEEE--cCC--CHHHHHHHHHHcCCCCceeecCChHHHHHcCCcc
Q 027527 101 VAFARHFGCVLCRKRADYLAAKKDVMDASGVALVLI--GPG--SVEQARTFSEQTKFKGEVYADPNHSSYEALSFVS 173 (222)
Q Consensus 101 VvF~R~~~Cp~C~~el~~L~~~~~~l~~~gv~lvaI--s~~--s~~~i~~f~~~~~~pfpil~Dpd~~lyk~lGl~~ 173 (222)
|.+|-...|.-|++-...|.+ +|+..-.+ -.+ +.++++.+.++.++ .-+.......|+.++...
T Consensus 2 i~iy~~p~C~~crkA~~~L~~-------~gi~~~~~d~~~~p~s~~eL~~~l~~~g~--~~l~n~~~~~~r~~~~~~ 69 (113)
T cd03033 2 IIFYEKPGCANNARQKALLEA-------AGHEVEVRDLLTEPWTAETLRPFFGDLPV--AEWFNPAAPRVKSGEVVP 69 (113)
T ss_pred EEEEECCCCHHHHHHHHHHHH-------cCCCcEEeehhcCCCCHHHHHHHHHHcCH--HHHHhcccHHHHhcCCCc
Confidence 457788999999976655554 45443333 333 44899999997654 555567799999888764
No 227
>PF06053 DUF929: Domain of unknown function (DUF929); InterPro: IPR009272 This is a family of proteins from the archaeon Sulfolobus, with undetermined function.
Probab=67.05 E-value=8 Score=34.23 Aligned_cols=38 Identities=24% Similarity=0.238 Sum_probs=31.5
Q ss_pred CccCCCeEEEEEEcCCCChhHHHHHHHHHHhHHHHHhC
Q 027527 92 DLWKDRKAVVAFARHFGCVLCRKRADYLAAKKDVMDAS 129 (222)
Q Consensus 92 dl~~~~~vvVvF~R~~~Cp~C~~el~~L~~~~~~l~~~ 129 (222)
|+..++++.|+|.-..|||+|-.+-..|.....++-.-
T Consensus 53 d~~~~Gk~~v~~igw~gCP~~A~~sW~L~~ALsrfGn~ 90 (249)
T PF06053_consen 53 DLAPNGKPEVIFIGWEGCPYCAAESWALYIALSRFGNF 90 (249)
T ss_pred ccCCCCeeEEEEEecccCccchhhHHHHHHHHHhcCCe
Confidence 34456789999999999999999999998888777543
No 228
>PRK06183 mhpA 3-(3-hydroxyphenyl)propionate hydroxylase; Validated
Probab=66.58 E-value=18 Score=34.68 Aligned_cols=99 Identities=16% Similarity=0.163 Sum_probs=64.2
Q ss_pred ccccCcCCCcEEecCCCCeEeCCCccCCCeEEEEEEcCCCChhHHHHHHHHHHhHHHHHhCCCEEEEEcCCCHHHHHHHH
Q 027527 69 EDTKNLLDTVKVYDVNGNAIPISDLWKDRKAVVAFARHFGCVLCRKRADYLAAKKDVMDASGVALVLIGPGSVEQARTFS 148 (222)
Q Consensus 69 ~~~g~~apdf~L~D~~G~~v~Lsdl~~~~~vvVvF~R~~~Cp~C~~el~~L~~~~~~l~~~gv~lvaIs~~s~~~i~~f~ 148 (222)
...|+.+|+..+.+.+|....+.++...+.++|.| ++..- ..+. ....+.++..+..++.+..+....
T Consensus 411 ~~~G~~~p~~~~~~~~~~~~~~d~~~~~~~~ll~~----~~~~~-~~~~--~~~~~~~~~~~~~~~~~~~~~~~~----- 478 (538)
T PRK06183 411 SPVGTLFPQPRVELGGGDRGLLDDVLGPGFAVLGW----GCDPL-AGLS--DEQRARWRALGARFVQVVPAVQAH----- 478 (538)
T ss_pred CCcccCcCCCeeEcCCCCcccchhccCCceEEEEe----cCCch-hcCC--HHHHHHHHHcCCeEEEEecccccc-----
Confidence 46799999999988777666677777666666655 22211 1111 111233667888888887664221
Q ss_pred HHcCCCCceeecCChHHHHHcCCccccceeeccc
Q 027527 149 EQTKFKGEVYADPNHSSYEALSFVSGVLVTFTPK 182 (222)
Q Consensus 149 ~~~~~pfpil~Dpd~~lyk~lGl~~~~~~~~~P~ 182 (222)
.-+.+.+.|.++.+.+.|+........+.|.
T Consensus 479 ---~~~~~~~~d~~g~~~~~~~~~~~~~~lvRPD 509 (538)
T PRK06183 479 ---TAQDDHDSDVDGALRAWLARHGASAVLLRPD 509 (538)
T ss_pred ---cCCCceeecCCchHHHHHHhCCCEEEEECCC
Confidence 0134578899999999999877666666674
No 229
>PF09695 YtfJ_HI0045: Bacterial protein of unknown function (YtfJ_HI0045); InterPro: IPR006513 These are sequences from gammaproteobacteria that are related to the Escherichia coli protein, YtfJ.
Probab=66.38 E-value=62 Score=26.84 Aligned_cols=106 Identities=19% Similarity=0.128 Sum_probs=59.7
Q ss_pred cccCcCCCcEEecC-----CCCeEeCCCccC----CCeEEEEEEcCCCChhHHHHHHHHHHh-HHH-HHhCCCEEEEEc-
Q 027527 70 DTKNLLDTVKVYDV-----NGNAIPISDLWK----DRKAVVAFARHFGCVLCRKRADYLAAK-KDV-MDASGVALVLIG- 137 (222)
Q Consensus 70 ~~g~~apdf~L~D~-----~G~~v~Lsdl~~----~~~vvVvF~R~~~Cp~C~~el~~L~~~-~~~-l~~~gv~lvaIs- 137 (222)
..|+.+|.+.+.|. +|..++... |. .+++.||++- .+-+...+.=..|.+. .+. |.....+...|-
T Consensus 2 ~~~~~~p~V~v~d~Gel~l~~~~~~y~~-W~s~~l~GKVrviq~i-AGr~sake~N~~l~~aik~a~f~~d~yqtttIiN 79 (160)
T PF09695_consen 2 TLGQPVPPVTVADKGELILNGDKISYQP-WNSAQLPGKVRVIQHI-AGRSSAKEMNAPLIEAIKAAKFPHDKYQTTTIIN 79 (160)
T ss_pred cCCCcCCceEecCCceEEEcCCcccccc-cCccccCCCEEEEEEe-ccCCchhHhhHHHHHHHHHcCCCccceeEEEEEe
Confidence 35677777777653 455555544 43 2567676653 2333333333333332 222 444445555553
Q ss_pred CCC-----HHHHHHHHHHcC--CCCc-eeecCChHHHHHcCCccccce
Q 027527 138 PGS-----VEQARTFSEQTK--FKGE-VYADPNHSSYEALSFVSGVLV 177 (222)
Q Consensus 138 ~~s-----~~~i~~f~~~~~--~pfp-il~Dpd~~lyk~lGl~~~~~~ 177 (222)
.|+ -..++..+++.. +|.. ++.|.++.+-+++++......
T Consensus 80 ~dDAi~gt~~fVrss~e~~kk~~p~s~~vlD~~G~~~~aW~L~~~~Sa 127 (160)
T PF09695_consen 80 LDDAIWGTGGFVRSSAEDSKKEFPWSQFVLDSNGVVRKAWQLQEESSA 127 (160)
T ss_pred cccccccchHHHHHHHHHhhhhCCCcEEEEcCCCceeccccCCCCCce
Confidence 332 245666665544 6655 899999999999999766433
No 230
>PF00875 DNA_photolyase: DNA photolyase from Prosite.; InterPro: IPR006050 DNA photolyases are enzymes that bind to DNA containing pyrimidine dimers: on absorption of visible light, they catalyse dimer splitting into the constituent monomers, a process called photoreactivation []. This is a DNA repair mechanism, repairing mismatched pyrimidine dimers induced by exposure to ultra-violet light []. The precise mechanisms involved in substrate binding, conversion of light energy to the mechanical energy needed to rupture the cyclobutane ring, and subsequent release of the product are uncertain []. Analysis of DNA lyases has revealed the presence of an intrinsic chromophore, all monomers containing a reduced FAD moiety, and, in addition, either a reduced pterin or 8-hydroxy-5-diazaflavin as a second chromophore [, ]. Either chromophore may act as the primary photon acceptor, peak absorptions occurring in the blue region of the spectrum and in the UV-B region, at a wavelength around 290nm []. This domain binds a light harvesting cofactor.; GO: 0003913 DNA photolyase activity, 0006281 DNA repair; PDB: 3UMV_A 2J07_A 1IQU_A 2J09_A 2J08_A 1IQR_A 1DNP_A 3FY4_B 2VTB_A 2J4D_B ....
Probab=65.85 E-value=29 Score=27.73 Aligned_cols=66 Identities=14% Similarity=0.156 Sum_probs=43.0
Q ss_pred CCeEEEEEEcCCC-------ChhHHHH-HHHHHHhHHHHHhCCCEEEEEcCCCHHHHHHHHHHcCCCCceeecCC
Q 027527 96 DRKAVVAFARHFG-------CVLCRKR-ADYLAAKKDVMDASGVALVLIGPGSVEQARTFSEQTKFKGEVYADPN 162 (222)
Q Consensus 96 ~~~vvVvF~R~~~-------Cp~C~~e-l~~L~~~~~~l~~~gv~lvaIs~~s~~~i~~f~~~~~~pfpil~Dpd 162 (222)
+.+++.+|+.... .+.-+.. ...|.++..++++.|+.++.+..+..+.+.++++++++. .||++.+
T Consensus 24 ~~~v~~vfv~d~~~~~~~~~~~~r~~Fl~~sL~~L~~~L~~~g~~L~v~~g~~~~~l~~l~~~~~~~-~V~~~~~ 97 (165)
T PF00875_consen 24 GDPVLPVFVFDPEEFHPYRIGPRRRRFLLESLADLQESLRKLGIPLLVLRGDPEEVLPELAKEYGAT-AVYFNEE 97 (165)
T ss_dssp TSEEEEEEEE-HHGGTTCSSCHHHHHHHHHHHHHHHHHHHHTTS-EEEEESSHHHHHHHHHHHHTES-EEEEE--
T ss_pred CCCeEEEEEecccccccccCcchHHHHHHHHHHHHHHHHHhcCcceEEEecchHHHHHHHHHhcCcC-eeEeccc
Confidence 3566666654332 2233332 347778889999999999988888778899999998854 3666654
No 231
>PRK13600 putative ribosomal protein L7Ae-like; Provisional
Probab=64.87 E-value=26 Score=25.85 Aligned_cols=55 Identities=9% Similarity=0.105 Sum_probs=42.1
Q ss_pred HHhHHHHHhCCCEEEEEcCCC-H---HHHHHHHHHcCCCCceeecCChHHHHHcCCcccc
Q 027527 120 AAKKDVMDASGVALVLIGPGS-V---EQARTFSEQTKFKGEVYADPNHSSYEALSFVSGV 175 (222)
Q Consensus 120 ~~~~~~l~~~gv~lvaIs~~s-~---~~i~~f~~~~~~pfpil~Dpd~~lyk~lGl~~~~ 175 (222)
++-...++...+.++.|..|- + ..+...|++.++|+ +|.|.-.+|-++.|+..+.
T Consensus 19 kqt~Kai~kg~~~~v~iA~Da~~~vv~~l~~lceek~Ip~-v~V~s~~~LGkAcgi~V~a 77 (84)
T PRK13600 19 KETLKALKKDQVTSLIIAEDVEVYLMTRVLSQINQKNIPV-SFFKSKHALGKHVGINVNA 77 (84)
T ss_pred HHHHHHHhcCCceEEEEeCCCCHHHHHHHHHHHHHcCCCE-EEECCHHHHHHHhCCCcCe
Confidence 344555666667778787763 2 46678999999998 7889999999999998764
No 232
>cd03059 GST_N_SspA GST_N family, Stringent starvation protein A (SspA) subfamily; SspA is a RNA polymerase (RNAP)-associated protein required for the lytic development of phage P1 and for stationary phase-induced acid tolerance of E. coli. It is implicated in survival during nutrient starvation. SspA adopts the GST fold with an N-terminal TRX-fold domain and a C-terminal alpha helical domain, but it does not bind glutathione (GSH) and lacks GST activity. SspA is highly conserved among gram-negative bacteria. Related proteins found in Neisseria (called RegF), Francisella and Vibrio regulate the expression of virulence factors necessary for pathogenesis.
Probab=62.78 E-value=9.1 Score=25.82 Aligned_cols=53 Identities=15% Similarity=0.196 Sum_probs=27.6
Q ss_pred EEcCCCChhHHHHHHHHHHhHHHHHhCCCE--EEEEcCCCHHHHHHHHHHcCCC-CceeecCChH
Q 027527 103 FARHFGCVLCRKRADYLAAKKDVMDASGVA--LVLIGPGSVEQARTFSEQTKFK-GEVYADPNHS 164 (222)
Q Consensus 103 F~R~~~Cp~C~~el~~L~~~~~~l~~~gv~--lvaIs~~s~~~i~~f~~~~~~p-fpil~Dpd~~ 164 (222)
.|...+||.|++-...|. ++|+. ++-|..+. ...+|.+..... .|++.|.+..
T Consensus 3 ly~~~~~~~~~~v~~~l~-------~~gi~~~~~~v~~~~--~~~~~~~~~p~~~vP~l~~~~~~ 58 (73)
T cd03059 3 LYSGPDDVYSHRVRIVLA-------EKGVSVEIIDVDPDN--PPEDLAELNPYGTVPTLVDRDLV 58 (73)
T ss_pred EEECCCChhHHHHHHHHH-------HcCCccEEEEcCCCC--CCHHHHhhCCCCCCCEEEECCEE
Confidence 456788999998655554 33443 33333322 223444433332 5677665433
No 233
>PRK10954 periplasmic protein disulfide isomerase I; Provisional
Probab=62.62 E-value=14 Score=31.02 Aligned_cols=34 Identities=18% Similarity=0.232 Sum_probs=22.0
Q ss_pred EEEEEcCCCChhHHHHHHHH---HHhHHHHHhCCCEEE
Q 027527 100 VVAFARHFGCVLCRKRADYL---AAKKDVMDASGVALV 134 (222)
Q Consensus 100 vVvF~R~~~Cp~C~~el~~L---~~~~~~l~~~gv~lv 134 (222)
-|+.|..+.||+|...-+.| ..+.+.+ ..++.++
T Consensus 40 ~VvEffdy~CphC~~~~~~l~~~~~~~~~~-~~~v~~~ 76 (207)
T PRK10954 40 QVLEFFSFYCPHCYQFEEVYHVSDNVKKKL-PEGTKMT 76 (207)
T ss_pred eEEEEeCCCCccHHHhcccccchHHHHHhC-CCCCeEE
Confidence 36667799999999977654 3444444 3455544
No 234
>PF01323 DSBA: DSBA-like thioredoxin domain; InterPro: IPR001853 DSBA is a sub-family of the Thioredoxin family []. The efficient and correct folding of bacterial disulphide bonded proteins in vivo is dependent upon a class of periplasmic oxidoreductase proteins called DsbA, after the Escherichia coli enzyme. The bacterial protein-folding factor DsbA is the most oxidizing of the thioredoxin family. DsbA catalyses disulphide-bond formation during the folding of secreted proteins. The extremely oxidizing nature of DsbA has been proposed to result from either domain motion or stabilising active-site interactions in the reduced form. DsbA's highly oxidizing nature is a result of hydrogen bond, electrostatic and helix-dipole interactions that favour the thiolate over the disulphide at the active site []. In the pathogenic bacterium Vibrio cholerae, the DsbA homologue (TcpG) is responsible for the folding, maturation and secretion of virulence factors. While the overall architecture of TcpG and DsbA is similar and the surface features are retained in TcpG, there are significant differences. For example, the kinked active site helix results from a three-residue loop in DsbA, but is caused by a proline in TcpG (making TcpG more similar to thioredoxin in this respect). Furthermore, the proposed peptide binding groove of TcpG is substantially shortened compared with that of DsbA due to a six-residue deletion. Also, the hydrophobic pocket of TcpG is more shallow and the acidic patch is much less extensive than that of E. coli DsbA [].; GO: 0015035 protein disulfide oxidoreductase activity; PDB: 3GL5_A 3DKS_D 3RPP_C 3RPN_B 1YZX_A 3L9V_C 2IMD_A 2IME_A 2IMF_A 2B3S_B ....
Probab=60.79 E-value=32 Score=27.57 Aligned_cols=41 Identities=12% Similarity=0.101 Sum_probs=31.7
Q ss_pred EEEEcCCCChhHHHHHHHHHHhHHHHHhCCCEEEEEcCCCH
Q 027527 101 VAFARHFGCVLCRKRADYLAAKKDVMDASGVALVLIGPGSV 141 (222)
Q Consensus 101 VvF~R~~~Cp~C~~el~~L~~~~~~l~~~gv~lvaIs~~s~ 141 (222)
|.||..+-||.|..-...|.++..+..+..+....+.....
T Consensus 2 i~~~~D~~Cp~cy~~~~~l~~l~~~~~~~~i~~~p~~l~~~ 42 (193)
T PF01323_consen 2 IEFFFDFICPWCYLASPRLRKLRAEYPDVEIEWRPFPLRPD 42 (193)
T ss_dssp EEEEEBTTBHHHHHHHHHHHHHHHHHTTCEEEEEEESSSTH
T ss_pred EEEEEeCCCHHHHHHHHHHHHHHHHhcCCcEEEeccccccc
Confidence 67888999999999999999998888445555656654443
No 235
>PF02966 DIM1: Mitosis protein DIM1; InterPro: IPR004123 Thioredoxins [, , , ] are small disulphide-containing redox proteins that have been found in all the kingdoms of living organisms. Thioredoxin serves as a general protein disulphide oxidoreductase. It interacts with a broad range of proteins by a redox mechanism based on reversible oxidation of 2 cysteine thiol groups to a disulphide, accompanied by the transfer of 2 electrons and 2 protons. The net result is the covalent interconversion of a disulphide and a dithiol. Compared to human thioredoxin, human U5 snRNP-specific protein U5-15kDa contains 37 additional residues that may cause structural changes which most likely form putative binding sites for other spliceosomal proteins or RNA. Although U5-15kDa apparently lacks protein disulphide isomerase activity, it is strictly required for pre-mRNA splicing [].; GO: 0007067 mitosis, 0005681 spliceosomal complex; PDB: 1SYX_E 1PQN_A 1QGV_A 2AV4_A 1XBS_A 3GIX_A.
Probab=60.53 E-value=31 Score=27.77 Aligned_cols=45 Identities=13% Similarity=0.090 Sum_probs=33.0
Q ss_pred CCeEEEEEEcCCCChhHHHHHHHHHHhHHHHHhCCCEEEEEcCCCH
Q 027527 96 DRKAVVAFARHFGCVLCRKRADYLAAKKDVMDASGVALVLIGPGSV 141 (222)
Q Consensus 96 ~~~vvVvF~R~~~Cp~C~~el~~L~~~~~~l~~~gv~lvaIs~~s~ 141 (222)
+.++||+-|-+.|.|.|.+.=.-|.+..+++ ..-+.|.+|..+..
T Consensus 19 ~drvvViRFG~d~d~~Cm~mDeiL~~~a~~v-~~~a~IY~vDi~~V 63 (133)
T PF02966_consen 19 EDRVVVIRFGRDWDPVCMQMDEILYKIAEKV-KNFAVIYLVDIDEV 63 (133)
T ss_dssp SSSEEEEEEE-TTSHHHHHHHHHHHHHHHHH-TTTEEEEEEETTTT
T ss_pred CceEEEEEeCCCCCccHHHHHHHHHHHHHHh-hcceEEEEEEcccc
Confidence 4689999999999999997666666666665 34466777777744
No 236
>PRK01018 50S ribosomal protein L30e; Reviewed
Probab=59.91 E-value=32 Score=25.80 Aligned_cols=51 Identities=8% Similarity=0.029 Sum_probs=39.6
Q ss_pred HHHHHhCCCEEEEEcCCCH----HHHHHHHHHcCCCCceeecCChHHHHHcCCcc
Q 027527 123 KDVMDASGVALVLIGPGSV----EQARTFSEQTKFKGEVYADPNHSSYEALSFVS 173 (222)
Q Consensus 123 ~~~l~~~gv~lvaIs~~s~----~~i~~f~~~~~~pfpil~Dpd~~lyk~lGl~~ 173 (222)
...++...+++|.|..|-+ +.+..+++++++|+-.|.....++-++.|...
T Consensus 25 ~kai~~gkaklViiA~D~~~~~~~~i~~~c~~~~Ip~~~~~~tk~eLG~a~Gk~~ 79 (99)
T PRK01018 25 IKAIKLGKAKLVIVASNCPKDIKEDIEYYAKLSGIPVYEYEGSSVELGTLCGKPF 79 (99)
T ss_pred HHHHHcCCceEEEEeCCCCHHHHHHHHHHHHHcCCCEEEECCCHHHHHHHhCCCC
Confidence 4455666788999988855 45666889999998777778899999999864
No 237
>PTZ00222 60S ribosomal protein L7a; Provisional
Probab=59.90 E-value=61 Score=28.95 Aligned_cols=54 Identities=11% Similarity=0.100 Sum_probs=38.4
Q ss_pred HHHhHHHHHhCCCEEEEEcCC-CH-HH---HHHHHHHcCCCCceeecCChHHHHHcCCcc
Q 027527 119 LAAKKDVMDASGVALVLIGPG-SV-EQ---ARTFSEQTKFKGEVYADPNHSSYEALSFVS 173 (222)
Q Consensus 119 L~~~~~~l~~~gv~lvaIs~~-s~-~~---i~~f~~~~~~pfpil~Dpd~~lyk~lGl~~ 173 (222)
+......++..-+.+|.|..| ++ +. +...|+++++||-++- ...+|-++.|.+.
T Consensus 137 ~n~VtkaIekkKAkLVIIA~DVsPie~vk~LpaLCrk~~VPY~iVk-tKaeLG~AIGkKt 195 (263)
T PTZ00222 137 LQEVTRAIEKKQARMVVIANNVDPVELVLWMPNLCRANKIPYAIVK-DMARLGDAIGRKT 195 (263)
T ss_pred HHHHHHHHHcCCceEEEEeCCCCHHHHHHHHHHHHHhcCCCEEEEC-CHHHHHHHHCCCC
Confidence 444455566667888888877 33 32 4578999999996665 5588999999764
No 238
>KOG1752 consensus Glutaredoxin and related proteins [Posttranslational modification, protein turnover, chaperones]
Probab=59.67 E-value=30 Score=26.44 Aligned_cols=15 Identities=33% Similarity=0.871 Sum_probs=11.9
Q ss_pred EEEEEEcCCCChhHHH
Q 027527 99 AVVAFARHFGCVLCRK 114 (222)
Q Consensus 99 vvVvF~R~~~Cp~C~~ 114 (222)
.||+|-+ +|||+|..
T Consensus 15 ~VVifSK-s~C~~c~~ 29 (104)
T KOG1752|consen 15 PVVIFSK-SSCPYCHR 29 (104)
T ss_pred CEEEEEC-CcCchHHH
Confidence 4666665 99999997
No 239
>PF05176 ATP-synt_10: ATP10 protein; InterPro: IPR007849 This entry represents the ATPase assembly factor ATP10 found in mitochondria, which is essential for the assembly of the mitochondrial F1-F0 complex. A yeast nuclear gene (ATP10) encodes a product that is essential for the assembly of a functional mitochondrial ATPase complex. Mutations in ATP10 induce a loss of rutamycin sensitivity in the mitochondrial ATPase, but do not affect the respiratory enzymes. ATP10 has an Mr of 30,293 and its primary structure is not related to any known subunit of the yeast or mammalian mitochondrial ATPase complexes. ATP10 is associated with the mitochondrial membrane. It is suggested that the ATP10 product is not a subunit of the ATPase complex but rather a protein required for the assembly of the F0 sector of the complex [].; GO: 0033615 mitochondrial proton-transporting ATP synthase complex assembly, 0005743 mitochondrial inner membrane
Probab=58.55 E-value=18 Score=31.87 Aligned_cols=109 Identities=13% Similarity=0.083 Sum_probs=65.4
Q ss_pred CCCccccCcCCCcEEecCCCCeEeCCCccCCCeE-EEEEEcCCCChhHHHHHHHHHHhHHHHH-hC--CCEEEEEcCCCH
Q 027527 66 SVSEDTKNLLDTVKVYDVNGNAIPISDLWKDRKA-VVAFARHFGCVLCRKRADYLAAKKDVMD-AS--GVALVLIGPGSV 141 (222)
Q Consensus 66 ~~~~~~g~~apdf~L~D~~G~~v~Lsdl~~~~~v-vVvF~R~~~Cp~C~~el~~L~~~~~~l~-~~--gv~lvaIs~~s~ 141 (222)
.-..+..-.+|++.-.+.+|+.+++.+.++++.. |.+|++..+-..+..+.. ...+++. .. .+++|-|...+.
T Consensus 92 l~~~~kAlyFP~l~g~tL~g~~~~~~~~l~gkvSlV~l~s~~~ge~~~~sw~~---p~~~~~~~~~~~~~q~v~In~~e~ 168 (252)
T PF05176_consen 92 LFKADKALYFPNLQGKTLAGNKVDTTDLLRGKVSLVCLFSSAWGEEMVDSWTS---PFLEDFLQEPYGRVQIVEINLIEN 168 (252)
T ss_pred cCcHHhCCcCCCCccccCCCCCcccccccCCceEEEEEeehHHHHHHHHHHhh---HHHHHHhhCCCCceEEEEEecchH
Confidence 3334556679999999999999999999988754 555555554444444443 2333332 33 788999988654
Q ss_pred H---HHHHHH-H--HcCCCC-----ceeecC---ChHHHHHcCCccccce
Q 027527 142 E---QARTFS-E--QTKFKG-----EVYADP---NHSSYEALSFVSGVLV 177 (222)
Q Consensus 142 ~---~i~~f~-~--~~~~pf-----pil~Dp---d~~lyk~lGl~~~~~~ 177 (222)
- -+..+. . +..+|- -++++. ...+-+++|+.....+
T Consensus 169 ~~k~~l~~~~~~~lrk~ip~~~h~~Yf~~~~~~~~~~iRe~Lgi~N~~~G 218 (252)
T PF05176_consen 169 WLKSWLVKLFMGSLRKSIPEERHDRYFIVYRGQLSDDIREALGINNSYVG 218 (252)
T ss_pred HHHHHHHHHHhhhhhccCCHHHCceEEEEeCCcccHHHHHHhCCCCCCcC
Confidence 2 122222 1 112331 134442 4677899999766543
No 240
>PRK12702 mannosyl-3-phosphoglycerate phosphatase; Reviewed
Probab=57.43 E-value=50 Score=30.13 Aligned_cols=49 Identities=12% Similarity=0.202 Sum_probs=38.9
Q ss_pred HHhHHHHHhCCCEEEEEcCCCHHHHHHHHHHcCCCCceeecCChHHHHH
Q 027527 120 AAKKDVMDASGVALVLIGPGSVEQARTFSEQTKFKGEVYADPNHSSYEA 168 (222)
Q Consensus 120 ~~~~~~l~~~gv~lvaIs~~s~~~i~~f~~~~~~pfpil~Dpd~~lyk~ 168 (222)
.+...+++++|+.||..+.-+..++..++++.++..++++.....+|..
T Consensus 24 ~~aL~~Lk~~GI~vVlaTGRt~~ev~~l~~~Lgl~~p~I~eNGA~I~~p 72 (302)
T PRK12702 24 RQALAALERRSIPLVLYSLRTRAQLEHLCRQLRLEHPFICEDGSAIYVP 72 (302)
T ss_pred HHHHHHHHHCCCEEEEEcCCCHHHHHHHHHHhCCCCeEEEeCCcEEEEc
Confidence 3446677789999999988899999999999999887777666555543
No 241
>PF10740 DUF2529: Protein of unknown function (DUF2529); InterPro: IPR019676 This entry represents a protein family conserved in the Bacillales. Their function is not known. ; PDB: 3JX9_A.
Probab=56.45 E-value=16 Score=30.62 Aligned_cols=82 Identities=12% Similarity=0.084 Sum_probs=31.2
Q ss_pred cCcCCCcEEecCCCCeEeCCCccCCCeEEEEEEcCCCChhHHHHHHHHHHhHHHHHhCCCEEEEEc-CCCH-HHHHHHH-
Q 027527 72 KNLLDTVKVYDVNGNAIPISDLWKDRKAVVAFARHFGCVLCRKRADYLAAKKDVMDASGVALVLIG-PGSV-EQARTFS- 148 (222)
Q Consensus 72 g~~apdf~L~D~~G~~v~Lsdl~~~~~vvVvF~R~~~Cp~C~~el~~L~~~~~~l~~~gv~lvaIs-~~s~-~~i~~f~- 148 (222)
-+++|...-.+.+.. .++++-.-. -|++|-|+.... +..+..+++.+.|+.+|+|+ ..+. +.+..++
T Consensus 60 ~E~l~~~k~l~~~~~--~~~~lt~~D-RVllfs~~~~~~-------e~~~~a~~L~~~gi~~v~Vs~~~~~~~~l~~~~~ 129 (172)
T PF10740_consen 60 AEPLPSAKRLSEDLE--NFDELTETD-RVLLFSPFSTDE-------EAVALAKQLIEQGIPFVGVSPNKPDEEDLEDLAD 129 (172)
T ss_dssp TT--TTEEE--TT----------TT--EEEEEES-S--H-------HHHHHHHHHHHHT--EEEEE-SS---TTGGG-SS
T ss_pred CCCCchhhcCccccc--ccccccccc-eEEEEeCCCCCH-------HHHHHHHHHHHCCCCEEEEEecCCCCCchhhhhh
Confidence 345666665554322 233332222 367776655543 33345566778899999999 2211 1222211
Q ss_pred --HHcCCCCceeecCCh
Q 027527 149 --EQTKFKGEVYADPNH 163 (222)
Q Consensus 149 --~~~~~pfpil~Dpd~ 163 (222)
=.++++-+++.|+|+
T Consensus 130 ~~Idl~~~~~LvP~EdG 146 (172)
T PF10740_consen 130 VHIDLKLPKPLVPTEDG 146 (172)
T ss_dssp S-EE----S-SEE-TTS
T ss_pred heeecccCCCcccCCCC
Confidence 134566788888884
No 242
>TIGR03765 ICE_PFL_4695 integrating conjugative element protein, PFL_4695 family. This model describes a protein family exemplified by PFL_4695 of Pseudomonas fluorescens Pf-5. Full-length proteins in this family show some architectural variety, but this model represents a conserved domain. Most or all member proteins belong to laterally transferred chromosomal islands called integrative conjugative elements, or ICE.
Probab=56.37 E-value=68 Score=24.76 Aligned_cols=61 Identities=7% Similarity=0.054 Sum_probs=49.7
Q ss_pred HHHHHHHhHHHHHhCCCEEEEEcCCCHHHHHHHHHHcCCCCceeecCChHHHHHcCCccccc
Q 027527 115 RADYLAAKKDVMDASGVALVLIGPGSVEQARTFSEQTKFKGEVYADPNHSSYEALSFVSGVL 176 (222)
Q Consensus 115 el~~L~~~~~~l~~~gv~lvaIs~~s~~~i~~f~~~~~~pfpil~Dpd~~lyk~lGl~~~~~ 176 (222)
-..+|++..+++++.+..=++|..++.+..+...+-. =..++.-.+--.+.+.||+..++-
T Consensus 36 S~~WL~~~~~~L~~l~AvGlVVnV~t~~~l~~Lr~la-pgl~l~P~sgddLa~rL~l~hYPv 96 (105)
T TIGR03765 36 SRQWLQQNAAALKSLGAVGLVVNVETAAALQRLRALA-PGLPLLPVSGDDLAERLGLRHYPV 96 (105)
T ss_pred HHHHHHHHHHHHHHCCCeEEEEecCCHHHHHHHHHHc-CCCcccCCCHHHHHHHhCCCcccE
Confidence 3468999999999999999999999998888886653 235677788889999999987753
No 243
>PRK13602 putative ribosomal protein L7Ae-like; Provisional
Probab=56.27 E-value=46 Score=24.12 Aligned_cols=55 Identities=11% Similarity=0.104 Sum_probs=39.6
Q ss_pred HhHHHHHhCCCEEEEEcCCCH----HHHHHHHHHcCCCCceeecCChHHHHHcCCccccc
Q 027527 121 AKKDVMDASGVALVLIGPGSV----EQARTFSEQTKFKGEVYADPNHSSYEALSFVSGVL 176 (222)
Q Consensus 121 ~~~~~l~~~gv~lvaIs~~s~----~~i~~f~~~~~~pfpil~Dpd~~lyk~lGl~~~~~ 176 (222)
+....++...+++|.|..|-. ..+..+|+++++|+ ++.+...++-++.|......
T Consensus 18 ~v~kai~~gkaklViiA~D~~~~~~~~i~~~c~~~~Vp~-~~~~s~~eLG~a~G~~~~~a 76 (82)
T PRK13602 18 QTVKALKRGSVKEVVVAEDADPRLTEKVEALANEKGVPV-SKVDSMKKLGKACGIEVGAA 76 (82)
T ss_pred HHHHHHHcCCeeEEEEECCCCHHHHHHHHHHHHHcCCCE-EEECCHHHHHHHHCCCcCEE
Confidence 334556667788888888855 34556789999998 44557789999999877643
No 244
>TIGR01662 HAD-SF-IIIA HAD-superfamily hydrolase, subfamily IIIA. In the case of histidinol phosphatase and PNK-3'-phosphatase, this model represents a domain of a bifunctional system. In the histidinol phosphatase HisB, a C-terminal domain is an imidazoleglycerol-phosphate dehydratase which catalyzes a related step in histidine biosynthesis. In PNK-3'-phosphatase, N- and C-terminal domains constitute the polynucleotide kinase and DNA-binding components of the enzyme.
Probab=55.67 E-value=41 Score=25.44 Aligned_cols=40 Identities=10% Similarity=0.067 Sum_probs=32.3
Q ss_pred HHHHHhHHHHHhCCCEEEEEcCCC--------HHHHHHHHHHcCCCCc
Q 027527 117 DYLAAKKDVMDASGVALVLIGPGS--------VEQARTFSEQTKFKGE 156 (222)
Q Consensus 117 ~~L~~~~~~l~~~gv~lvaIs~~s--------~~~i~~f~~~~~~pfp 156 (222)
+.+.+..+++++.|+.++.++... .+.+++..+..++++.
T Consensus 28 ~~v~~~l~~L~~~g~~l~i~Sn~~~~~~~~~~~~~~~~~l~~~~l~~~ 75 (132)
T TIGR01662 28 PEVPDALAELKEAGYKVVIVTNQSGIGRGKFSSGRVARRLEELGVPID 75 (132)
T ss_pred CCHHHHHHHHHHCCCEEEEEECCccccccHHHHHHHHHHHHHCCCCEE
Confidence 455667778888999999999987 6788888898888753
No 245
>TIGR01684 viral_ppase viral phosphatase. These proteins also include an N-terminal domain (ca. 125 aas) that is unique to this clade.
Probab=55.53 E-value=64 Score=29.43 Aligned_cols=68 Identities=16% Similarity=0.187 Sum_probs=49.8
Q ss_pred cCCCcEEecCCCCeEeCCCccCCCeEEEEEEcCCCChhHHHHHHHHHHhHHHHHhCCCEEEEEcCCCHHHHHHHHHHcCC
Q 027527 74 LLDTVKVYDVNGNAIPISDLWKDRKAVVAFARHFGCVLCRKRADYLAAKKDVMDASGVALVLIGPGSVEQARTFSEQTKF 153 (222)
Q Consensus 74 ~apdf~L~D~~G~~v~Lsdl~~~~~vvVvF~R~~~Cp~C~~el~~L~~~~~~l~~~gv~lvaIs~~s~~~i~~f~~~~~~ 153 (222)
..|.+-+.|.||.-++-..- +-+ .-+.+.+..++++++|+.+..++.++.+.+.+..++.++
T Consensus 124 ~~~kvIvFDLDgTLi~~~~~-----v~i-------------rdPgV~EaL~~LkekGikLaIaTS~~Re~v~~~L~~lGL 185 (301)
T TIGR01684 124 EPPHVVVFDLDSTLITDEEP-----VRI-------------RDPRIYDSLTELKKRGCILVLWSYGDRDHVVESMRKVKL 185 (301)
T ss_pred ccceEEEEecCCCCcCCCCc-----ccc-------------CCHHHHHHHHHHHHCCCEEEEEECCCHHHHHHHHHHcCC
Confidence 35667788888887665431 000 014677888899999999999999989999999999999
Q ss_pred C--Cceee
Q 027527 154 K--GEVYA 159 (222)
Q Consensus 154 p--fpil~ 159 (222)
. |+++.
T Consensus 186 d~YFdvII 193 (301)
T TIGR01684 186 DRYFDIII 193 (301)
T ss_pred CcccCEEE
Confidence 8 55433
No 246
>PF13419 HAD_2: Haloacid dehalogenase-like hydrolase; PDB: 2FI1_A 2I6X_A 3SD7_A 4F71_A 4DFD_B 4F72_B 4DCC_A 3DDH_A 3KZX_A 2B0C_A ....
Probab=55.03 E-value=23 Score=27.14 Aligned_cols=34 Identities=24% Similarity=0.390 Sum_probs=28.6
Q ss_pred HhHHHHHhCCCEEEEEcCCCHHHHHHHHHHcCCC
Q 027527 121 AKKDVMDASGVALVLIGPGSVEQARTFSEQTKFK 154 (222)
Q Consensus 121 ~~~~~l~~~gv~lvaIs~~s~~~i~~f~~~~~~p 154 (222)
+...++++.|+.+++++..+.+.++...+++++.
T Consensus 84 ~~L~~l~~~~~~~~i~Sn~~~~~~~~~l~~~~~~ 117 (176)
T PF13419_consen 84 ELLERLKAKGIPLVIVSNGSRERIERVLERLGLD 117 (176)
T ss_dssp HHHHHHHHTTSEEEEEESSEHHHHHHHHHHTTHG
T ss_pred hhhhhcccccceeEEeecCCcccccccccccccc
Confidence 3455677789999999999999899999988877
No 247
>PRK07714 hypothetical protein; Provisional
Probab=54.53 E-value=86 Score=23.34 Aligned_cols=59 Identities=10% Similarity=0.043 Sum_probs=39.3
Q ss_pred HHHHHhCCCEEEEEcCCCH----HHHHHHHHHcCCCCceeecCChHHHHHcCCccccceeeccc
Q 027527 123 KDVMDASGVALVLIGPGSV----EQARTFSEQTKFKGEVYADPNHSSYEALSFVSGVLVTFTPK 182 (222)
Q Consensus 123 ~~~l~~~gv~lvaIs~~s~----~~i~~f~~~~~~pfpil~Dpd~~lyk~lGl~~~~~~~~~P~ 182 (222)
.+.++...+.+|.+..|-. +.+..+|+.+++|+- +.....++-+++|.....-..+.+.
T Consensus 27 ~~al~~g~~~lViiA~D~s~~~~~ki~~~~~~~~vp~~-~~~sk~eLG~a~Gk~~~~~vai~d~ 89 (100)
T PRK07714 27 LKEVRSGKAKLVLLSEDASVNTTKKITDKCTYYNVPMR-KVENRQQLGHAIGKDERVVVAVLDE 89 (100)
T ss_pred HHHHHhCCceEEEEeCCCCHHHHHHHHHHHHhcCCCEE-EeCCHHHHHHHhCCCcceEEEEeCc
Confidence 3455556688888888744 455566788888874 4567789999999864433333333
No 248
>PF00702 Hydrolase: haloacid dehalogenase-like hydrolase; InterPro: IPR005834 This group of hydrolase enzymes is structurally different from the alpha/beta hydrolase family (abhydrolase). This group includes L-2-haloacid dehalogenase, epoxide hydrolases and phosphatases. The structure consists of two domains. One is an inserted four helix bundle, which is the least well conserved region of the alignment, between residues 16 and 96 of HAD1_PSESP. The rest of the fold is composed of the core alpha/beta domain.; GO: 0003824 catalytic activity, 0008152 metabolic process; PDB: 1TE2_A 3NAL_A 3NAM_A 3NAN_A 3A1D_B 3J09_A 3J08_A 2B8E_C 3A1E_A 2VOY_J ....
Probab=54.48 E-value=38 Score=27.30 Aligned_cols=58 Identities=12% Similarity=0.164 Sum_probs=40.3
Q ss_pred HHHHHhHHHHHhCCCEEEEEcCCCHHHHHHHHHHcCCCCc-eeecC------C--hHHHHHcCCccc
Q 027527 117 DYLAAKKDVMDASGVALVLIGPGSVEQARTFSEQTKFKGE-VYADP------N--HSSYEALSFVSG 174 (222)
Q Consensus 117 ~~L~~~~~~l~~~gv~lvaIs~~s~~~i~~f~~~~~~pfp-il~Dp------d--~~lyk~lGl~~~ 174 (222)
+...+...++++.|+++..++-|+...+...+++.+++-. ++.+- . ..+.+.|++...
T Consensus 130 ~~~~~~l~~L~~~Gi~~~i~TGD~~~~a~~~~~~lgi~~~~v~a~~~~kP~~k~~~~~i~~l~~~~~ 196 (215)
T PF00702_consen 130 PGAKEALQELKEAGIKVAILTGDNESTASAIAKQLGIFDSIVFARVIGKPEPKIFLRIIKELQVKPG 196 (215)
T ss_dssp TTHHHHHHHHHHTTEEEEEEESSEHHHHHHHHHHTTSCSEEEEESHETTTHHHHHHHHHHHHTCTGG
T ss_pred hhhhhhhhhhhccCcceeeeeccccccccccccccccccccccccccccccchhHHHHHHHHhcCCC
Confidence 3456667778888999999998888899999999998432 33322 2 345555665444
No 249
>PF11072 DUF2859: Protein of unknown function (DUF2859); InterPro: IPR021300 This model describes a protein family exemplified by PFL_4695 of Pseudomonas fluorescens Pf-5. Full-length proteins in this family show some architectural variety, but this model represents a conserved domain. Most or all member proteins belong to laterally transferred chromosomal islands called integrative conjugative elements, or ICE.
Probab=54.48 E-value=68 Score=26.04 Aligned_cols=60 Identities=5% Similarity=0.037 Sum_probs=49.7
Q ss_pred HHHHHHHhHHHHHhCCCEEEEEcCCCHHHHHHHHHHcCCCCceeecCChHHHHHcCCcccc
Q 027527 115 RADYLAAKKDVMDASGVALVLIGPGSVEQARTFSEQTKFKGEVYADPNHSSYEALSFVSGV 175 (222)
Q Consensus 115 el~~L~~~~~~l~~~gv~lvaIs~~s~~~i~~f~~~~~~pfpil~Dpd~~lyk~lGl~~~~ 175 (222)
-..+|++..++|++.+..=++|..++.+.++..++-- -..+++-..--.+.+.||+..++
T Consensus 74 S~~WL~~~~~~L~~l~AvGlVVNV~t~~~L~~Lr~la-pgl~l~P~sgddLA~rL~l~HYP 133 (142)
T PF11072_consen 74 SRQWLQQNAEELKQLGAVGLVVNVATEAALQRLRQLA-PGLPLLPVSGDDLARRLGLSHYP 133 (142)
T ss_pred HHHHHHHHHHHHHHCCCeEEEEecCCHHHHHHHHHHc-CCCeecCCCHHHHHHHhCCCccc
Confidence 3468999999999999999999999999888887652 23567778888999999998775
No 250
>PF09419 PGP_phosphatase: Mitochondrial PGP phosphatase; InterPro: IPR010021 This group of hypothetical proteins is a part of the IIIA subfamily of the haloacid dehalogenase (HAD) superfamily of hydrolases. All characterised members of this subfamily and most characterised members of the HAD superfamily are phosphatases. HAD superfamily phosphatases contain active site residues in several conserved catalytic motifs [], all of which are found conserved here. This family consists of sequences from fungi, plants, cyanobacteria, Gram-positive bacteria and Deinococcus. There is presently no characterisation of any sequence in this family.
Probab=53.19 E-value=23 Score=29.41 Aligned_cols=80 Identities=14% Similarity=0.053 Sum_probs=50.6
Q ss_pred cCCCcEEecCCCCeEeCCC--ccCCC-eEEEEEEcCCCChhHHHHH-HHHHHhHHHHHhCCC--EEEEEcCC-------C
Q 027527 74 LLDTVKVYDVNGNAIPISD--LWKDR-KAVVAFARHFGCVLCRKRA-DYLAAKKDVMDASGV--ALVLIGPG-------S 140 (222)
Q Consensus 74 ~apdf~L~D~~G~~v~Lsd--l~~~~-~vvVvF~R~~~Cp~C~~el-~~L~~~~~~l~~~gv--~lvaIs~~-------s 140 (222)
-.|++.+.|... +++.. |.+.+ +.+|+-+=.+-+++=..++ +++.+..+++++.+. +|+.||.. +
T Consensus 17 ~~P~l~V~si~~--I~~~~~~Lk~~Gik~li~DkDNTL~~~~~~~i~~~~~~~~~~l~~~~~~~~v~IvSNsaGs~~d~~ 94 (168)
T PF09419_consen 17 LLPHLYVPSIRD--IDFEANHLKKKGIKALIFDKDNTLTPPYEDEIPPEYAEWLNELKKQFGKDRVLIVSNSAGSSDDPD 94 (168)
T ss_pred cCCCEEcCChhh--CCcchhhhhhcCceEEEEcCCCCCCCCCcCcCCHHHHHHHHHHHHHCCCCeEEEEECCCCcccCcc
Confidence 356666666543 33333 43333 6677666666664444443 467777778777665 48888876 3
Q ss_pred HHHHHHHHHHcCCCC
Q 027527 141 VEQARTFSEQTKFKG 155 (222)
Q Consensus 141 ~~~i~~f~~~~~~pf 155 (222)
.++++.+.+.+++|+
T Consensus 95 ~~~a~~~~~~lgIpv 109 (168)
T PF09419_consen 95 GERAEALEKALGIPV 109 (168)
T ss_pred HHHHHHHHHhhCCcE
Confidence 578888888888774
No 251
>TIGR03609 S_layer_CsaB polysaccharide pyruvyl transferase CsaB. The CsaB protein (cell surface anchoring B) of Bacillus anthracis adds a pyruvoyl group to peptidoglycan-associated polysaccharide. This addition is required for proteins with an S-layer homology domain (pfam00395) to bind. Within the larger group of proteins described by Pfam model pfam04230, this model represents a distinct clade that nearly exactly follows the phylogenetic distribution of the S-layer homology domain (pfam00395).
Probab=51.98 E-value=87 Score=27.33 Aligned_cols=61 Identities=20% Similarity=0.134 Sum_probs=36.0
Q ss_pred CeEEEEEEcCCCChhHHHHHHHHHHhHHHHHh-CCCEEEEEcCC---CHHHHHHHHHHcCCCCcee
Q 027527 97 RKAVVAFARHFGCVLCRKRADYLAAKKDVMDA-SGVALVLIGPG---SVEQARTFSEQTKFKGEVY 158 (222)
Q Consensus 97 ~~vvVvF~R~~~Cp~C~~el~~L~~~~~~l~~-~gv~lvaIs~~---s~~~i~~f~~~~~~pfpil 158 (222)
++.+.+.+|. |...-.++...+.+..+++.+ .|.+|+.|... |.+..++..+...-+..++
T Consensus 172 ~~~i~i~~r~-~~~~~~~~~~~l~~~l~~l~~~~g~~v~~i~~~~~~D~~~~~~l~~~~~~~~~i~ 236 (298)
T TIGR03609 172 EPVIVVSLRP-WPLLDVSRLLRLLRALDRLQRDTGAFVLFLPFQQPQDLPLARALRDQLLGPAEVL 236 (298)
T ss_pred CCeEEEEECC-CCcCCHHHHHHHHHHHHHHHHhhCCeEEEEeCCcchhHHHHHHHHHhcCCCcEEE
Confidence 4556555554 555556677888888777754 48888877643 3344445544433333344
No 252
>TIGR01485 SPP_plant-cyano sucrose-6F-phosphate phosphohydrolase. Sucrose phosphate synthase (SPS), the prior step in the biosynthesis of sucrose contains a domain which exhibits considerable similarity to SPP albeit without conservation of the catalytic residues. The catalytic machinery of the synthase resides in another domain. It seems likely that the phosphatase-like domain is involved in substrate binding, possibly binding both substrates in a "product-like" orientation prior to ligation by the synthase catalytic domain.
Probab=51.38 E-value=31 Score=29.44 Aligned_cols=54 Identities=13% Similarity=-0.003 Sum_probs=42.5
Q ss_pred HHHHHHHHhHHHHHhCCCEEEEEcCCCHHHHHHHHHHcCCCCc--eeecCChHHHH
Q 027527 114 KRADYLAAKKDVMDASGVALVLIGPGSVEQARTFSEQTKFKGE--VYADPNHSSYE 167 (222)
Q Consensus 114 ~el~~L~~~~~~l~~~gv~lvaIs~~s~~~i~~f~~~~~~pfp--il~Dpd~~lyk 167 (222)
+..+.+.+...++.++|+.+|.++.-+...++++.++.+.+.| ++++....+|.
T Consensus 21 ~~~~~~~~~i~~~~~~gi~fv~aTGR~~~~~~~~~~~~~~~~p~~~I~~NGa~I~~ 76 (249)
T TIGR01485 21 QALLRLNALLEDHRGEDSLLVYSTGRSPHSYKELQKQKPLLTPDIWVTSVGSEIYY 76 (249)
T ss_pred HHHHHHHHHHHHhhccCceEEEEcCCCHHHHHHHHhcCCCCCCCEEEEcCCceEEe
Confidence 3467888888889999998777777788999999988888777 77766666654
No 253
>COG3769 Predicted hydrolase (HAD superfamily) [General function prediction only]
Probab=50.69 E-value=24 Score=31.18 Aligned_cols=70 Identities=14% Similarity=0.214 Sum_probs=50.5
Q ss_pred CCCcEEecCCCCeEeCCCccCCCeEEEEEEcCCCChhHHHHHHHHHHhHHHHHhCCCEEEEEcCCCHHHHHHHHHHcCCC
Q 027527 75 LDTVKVYDVNGNAIPISDLWKDRKAVVAFARHFGCVLCRKRADYLAAKKDVMDASGVALVLIGPGSVEQARTFSEQTKFK 154 (222)
Q Consensus 75 apdf~L~D~~G~~v~Lsdl~~~~~vvVvF~R~~~Cp~C~~el~~L~~~~~~l~~~gv~lvaIs~~s~~~i~~f~~~~~~p 154 (222)
.|-+-..|.||..+. ..+ +-+|+ ...+.++.+.|+.||.++..+..++..+.+..+++
T Consensus 6 ~~~lIFtDlD~TLl~-~~y-e~~pA--------------------~pv~~el~d~G~~Vi~~SSKT~aE~~~l~~~l~v~ 63 (274)
T COG3769 6 MPLLIFTDLDGTLLP-HSY-EWQPA--------------------APVLLELKDAGVPVILCSSKTRAEMLYLQKSLGVQ 63 (274)
T ss_pred cceEEEEcccCcccC-CCC-CCCcc--------------------chHHHHHHHcCCeEEEeccchHHHHHHHHHhcCCC
Confidence 344556788888777 221 22332 23466788999999999999999999999999999
Q ss_pred -CceeecCChHHH
Q 027527 155 -GEVYADPNHSSY 166 (222)
Q Consensus 155 -fpil~Dpd~~ly 166 (222)
-|+++.....+|
T Consensus 64 ~~p~iaEnG~aI~ 76 (274)
T COG3769 64 GLPLIAENGAAIY 76 (274)
T ss_pred CCceeecCCceEE
Confidence 577776655554
No 254
>PTZ00365 60S ribosomal protein L7Ae-like; Provisional
Probab=50.56 E-value=1e+02 Score=27.59 Aligned_cols=54 Identities=9% Similarity=0.016 Sum_probs=37.5
Q ss_pred HHHHhHHHHHhCCCEEEEEcCC-CHHHHH----HHHHHcCCCCceeecCChHHHHHcCCc
Q 027527 118 YLAAKKDVMDASGVALVLIGPG-SVEQAR----TFSEQTKFKGEVYADPNHSSYEALSFV 172 (222)
Q Consensus 118 ~L~~~~~~l~~~gv~lvaIs~~-s~~~i~----~f~~~~~~pfpil~Dpd~~lyk~lGl~ 172 (222)
-+++.-..++..-+.+|.|..| ++.... ..|+++++||-++. ...++.++.|..
T Consensus 136 Gin~VtklIekkKAkLVIIA~DVsP~t~kk~LP~LC~k~~VPY~iv~-sK~eLG~AIGkk 194 (266)
T PTZ00365 136 GLNHVTDLVEYKKAKLVVIAHDVDPIELVCFLPALCRKKEVPYCIIK-GKSRLGKLVHQK 194 (266)
T ss_pred hhHHHHHHHHhCCccEEEEeCCCCHHHHHHHHHHHHhccCCCEEEEC-CHHHHHHHhCCC
Confidence 3444555566666888888887 343333 56899999996665 446788999986
No 255
>PTZ00106 60S ribosomal protein L30; Provisional
Probab=50.35 E-value=47 Score=25.48 Aligned_cols=52 Identities=17% Similarity=0.113 Sum_probs=39.7
Q ss_pred HHHHhCCCEEEEEcCCCH----HHHHHHHHHcCCCCceeecCChHHHHHcCCcccc
Q 027527 124 DVMDASGVALVLIGPGSV----EQARTFSEQTKFKGEVYADPNHSSYEALSFVSGV 175 (222)
Q Consensus 124 ~~l~~~gv~lvaIs~~s~----~~i~~f~~~~~~pfpil~Dpd~~lyk~lGl~~~~ 175 (222)
..++...+.+|.|..|-+ +.+..+++.+++|+-.|.+...++-++.|.....
T Consensus 35 kalk~gkaklViiA~D~~~~~kkki~~~~~~~~Vpv~~~~~t~~eLG~A~Gk~~r~ 90 (108)
T PTZ00106 35 KALRNGKAKLVIISNNCPPIRRSEIEYYAMLSKTGVHHYAGNNNDLGTACGRHFRV 90 (108)
T ss_pred HHHHcCCeeEEEEeCCCCHHHHHHHHHHHhhcCCCEEEeCCCHHHHHHHhCCccCe
Confidence 445556688888888855 3556678988998877778899999999976543
No 256
>cd03061 GST_N_CLIC GST_N family, Chloride Intracellular Channel (CLIC) subfamily; composed of CLIC1-5, p64, parchorin and similar proteins. They are auto-inserting, self-assembling intracellular anion channels involved in a wide variety of functions including regulated secretion, cell division and apoptosis. They can exist in both water-soluble and membrane-bound states, and are found in various vesicles and membranes. Biochemical studies of the C. elegans homolog, EXC-4, show that the membrane localization domain is present in the N-terminal part of the protein. The structure of soluble human CLIC1 reveals that it is monomeric and it adopts a fold similar to GSTs, containing an N-terminal domain with a TRX fold and a C-terminal alpha helical domain. Upon oxidation, the N-terminal domain of CLIC1 undergoes a structural change to form a non-covalent dimer stabilized by the formation of an intramolecular disulfide bond between two cysteines that are far apart in the reduced form. The CLI
Probab=48.56 E-value=23 Score=26.32 Aligned_cols=57 Identities=7% Similarity=-0.002 Sum_probs=34.4
Q ss_pred CCChhHHHHHHHHHHhHHHHHhCCCEEEEEcCCCHHHHHHHHHHcCCC-CceeecCChHHHHHcC
Q 027527 107 FGCVLCRKRADYLAAKKDVMDASGVALVLIGPGSVEQARTFSEQTKFK-GEVYADPNHSSYEALS 170 (222)
Q Consensus 107 ~~Cp~C~~el~~L~~~~~~l~~~gv~lvaIs~~s~~~i~~f~~~~~~p-fpil~Dpd~~lyk~lG 170 (222)
-.||+|++-.-.|++. ....+++-|..++.. +.|.+-..+. .|++.|.+..+++.--
T Consensus 20 g~cpf~~rvrl~L~eK-----gi~ye~~~vd~~~~p--~~~~~~nP~g~vPvL~~~~~~i~eS~~ 77 (91)
T cd03061 20 GNCPFCQRLFMVLWLK-----GVVFNVTTVDMKRKP--EDLKDLAPGTQPPFLLYNGEVKTDNNK 77 (91)
T ss_pred CCChhHHHHHHHHHHC-----CCceEEEEeCCCCCC--HHHHHhCCCCCCCEEEECCEEecCHHH
Confidence 5799999877766654 222345556555422 3465554444 6888887766655433
No 257
>COG3019 Predicted metal-binding protein [General function prediction only]
Probab=47.11 E-value=54 Score=26.78 Aligned_cols=50 Identities=12% Similarity=0.221 Sum_probs=38.3
Q ss_pred eEEEEEEcCCCChhHHHHHHHHHHhHHHHHhCCCEEEEEcCCCHHHHHHHHHHcCCCCce
Q 027527 98 KAVVAFARHFGCVLCRKRADYLAAKKDVMDASGVALVLIGPGSVEQARTFSEQTKFKGEV 157 (222)
Q Consensus 98 ~vvVvF~R~~~Cp~C~~el~~L~~~~~~l~~~gv~lvaIs~~s~~~i~~f~~~~~~pfpi 157 (222)
..=++++...-|.-|.+++..| +++|++|=.+..++.+.+++ ++++|.++
T Consensus 25 ~~~~~vyksPnCGCC~~w~~~m-------k~~Gf~Vk~~~~~d~~alK~---~~gIp~e~ 74 (149)
T COG3019 25 ATEMVVYKSPNCGCCDEWAQHM-------KANGFEVKVVETDDFLALKR---RLGIPYEM 74 (149)
T ss_pred eeeEEEEeCCCCccHHHHHHHH-------HhCCcEEEEeecCcHHHHHH---hcCCChhh
Confidence 4457788999999999887655 57899999999888776654 45777643
No 258
>TIGR03556 photolyase_8HDF deoxyribodipyrimidine photo-lyase, 8-HDF type. This model describes a narrow clade of cyanobacterial deoxyribodipyrimidine photo-lyase. This group, in contrast to several closely related proteins, uses a chromophore that, in other lineages is modified further to become coenzyme F420. This chromophore is called 8-HDF in most articles on the DNA photolyase and FO in most literature on coenzyme F420.
Probab=46.88 E-value=1.1e+02 Score=29.14 Aligned_cols=58 Identities=16% Similarity=0.106 Sum_probs=40.3
Q ss_pred CeEEEEEEcCC---CCh-----hHHHHHHHHHHhHHHHHhCCCEEEEEcCCCHHHHHHHHHHcCCC
Q 027527 97 RKAVVAFARHF---GCV-----LCRKRADYLAAKKDVMDASGVALVLIGPGSVEQARTFSEQTKFK 154 (222)
Q Consensus 97 ~~vvVvF~R~~---~Cp-----~C~~el~~L~~~~~~l~~~gv~lvaIs~~s~~~i~~f~~~~~~p 154 (222)
.+++++|+... +.+ --+-.+..|.++..++++.|+.+++..-+..+.+.++++++++.
T Consensus 27 ~~vl~vfi~dp~~~~~~~~~~~r~~Fl~esL~~L~~~L~~~G~~L~v~~G~p~~vl~~l~~~~~~~ 92 (471)
T TIGR03556 27 AKVVGLFCLDPNILQADDMAPARVAYLIGCLQELQQRYQQAGSQLLILQGDPVQLIPQLAQQLGAK 92 (471)
T ss_pred CCEEEEEEEchhhhccccCCHHHHHHHHHHHHHHHHHHHHCCCCeEEEECCHHHHHHHHHHHcCCC
Confidence 45666666542 111 12334567888899999999999887655567889999987765
No 259
>PRK08132 FAD-dependent oxidoreductase; Provisional
Probab=46.85 E-value=48 Score=31.85 Aligned_cols=97 Identities=15% Similarity=0.117 Sum_probs=59.2
Q ss_pred CccccCcCCCcEEecCCCCeEeCCCccCCCeEEEEEEcCCCChhHHHHHHHHHHhHHHHHhCCCEEEEEcCCCHHHHHHH
Q 027527 68 SEDTKNLLDTVKVYDVNGNAIPISDLWKDRKAVVAFARHFGCVLCRKRADYLAAKKDVMDASGVALVLIGPGSVEQARTF 147 (222)
Q Consensus 68 ~~~~g~~apdf~L~D~~G~~v~Lsdl~~~~~vvVvF~R~~~Cp~C~~el~~L~~~~~~l~~~gv~lvaIs~~s~~~i~~f 147 (222)
....|..+|+..|. .+|+..+|.|++..+-+||.|-.. .-.. ...+. .+....++.++.++.+...
T Consensus 426 ~~~pG~r~p~~~~~-~~~~~~~l~dl~g~~f~ll~~~~~----~~~~---~~~~~-~~~~~~~~~~~~~~~~~~~----- 491 (547)
T PRK08132 426 GPVPGAPAPDAPVR-ADGEPGWLLDLLGGGFTLLLFGDD----AAAA---ALLQA-LAAAALPVRVVAVVPAGAA----- 491 (547)
T ss_pred CCCCCCCCCCCccc-CCCCceEHHHhcCCCEEEEEecCC----chhh---hhhhh-hhccCCceEEEEEecCccc-----
Confidence 35679999999987 467778999999666666655321 1111 11111 1123445666777655311
Q ss_pred HHHcCCCCceeecCChHHHHHcCCccccceeeccc
Q 027527 148 SEQTKFKGEVYADPNHSSYEALSFVSGVLVTFTPK 182 (222)
Q Consensus 148 ~~~~~~pfpil~Dpd~~lyk~lGl~~~~~~~~~P~ 182 (222)
.-+...+.|+++.+++.||+...-...+.|.
T Consensus 492 ----~~~~~~~~d~~~~~~~~~~~~~~~~~LvRPD 522 (547)
T PRK08132 492 ----QAAAGVLEDADGLAAERYDARPGTVYLIRPD 522 (547)
T ss_pred ----ccCcccccCcccHHHHHhCCCCCeEEEECCC
Confidence 1123467899999999999976655555564
No 260
>cd03055 GST_N_Omega GST_N family, Class Omega subfamily; GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. Class Omega GSTs show little or no GSH-conjugating activity towards standard GST substrates. Instead, they catalyze the GSH dependent reduction of protein disulfides, dehydroascorbate and monomethylarsonate, activities which are more characteristic of glutaredoxins. They contain a conserved cysteine equivalent to the first cysteine in the CXXC motif of glutaredoxins, which is a redox active residue capable of reducing GSH mixed disulfides in a monothiol mechanism. Polymorphisms of the class Omega
Probab=46.34 E-value=15 Score=26.44 Aligned_cols=54 Identities=17% Similarity=0.054 Sum_probs=29.3
Q ss_pred EEEEcCCCChhHHHHHHHHHHhHHHHHhCCCEEEEEcCCCHHHHHHHHHHcCC-CCceeecC
Q 027527 101 VAFARHFGCVLCRKRADYLAAKKDVMDASGVALVLIGPGSVEQARTFSEQTKF-KGEVYADP 161 (222)
Q Consensus 101 VvF~R~~~Cp~C~~el~~L~~~~~~l~~~gv~lvaIs~~s~~~i~~f~~~~~~-pfpil~Dp 161 (222)
+.+|....||.|++-...|...- ...+++-|..+.. -+.|.+.... ..|++.|.
T Consensus 19 ~~Ly~~~~sp~~~kv~~~L~~~g-----l~~~~~~v~~~~~--~~~~~~~np~~~vPvL~~~ 73 (89)
T cd03055 19 IRLYSMRFCPYAQRARLVLAAKN-----IPHEVININLKDK--PDWFLEKNPQGKVPALEID 73 (89)
T ss_pred EEEEeCCCCchHHHHHHHHHHcC-----CCCeEEEeCCCCC--cHHHHhhCCCCCcCEEEEC
Confidence 45566788999997555544432 1234444443321 1335554443 36888765
No 261
>cd03045 GST_N_Delta_Epsilon GST_N family, Class Delta and Epsilon subfamily; GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. The class Delta and Epsilon subfamily is made up primarily of insect GSTs, which play major roles in insecticide resistance by facilitating reductive dehydrochlorination of insecticides or conjugating them with GSH to produce water-soluble metabolites that are easily excreted. They are also implicated in protection against cellular damage by oxidative stress.
Probab=46.15 E-value=21 Score=24.06 Aligned_cols=61 Identities=15% Similarity=0.006 Sum_probs=33.1
Q ss_pred EEEcCCCChhHHHHHHHHHHhHHHHHhCCCEEEEEcCCCHH-HHHHHHHHcCC-CCceeecCChHHHH
Q 027527 102 AFARHFGCVLCRKRADYLAAKKDVMDASGVALVLIGPGSVE-QARTFSEQTKF-KGEVYADPNHSSYE 167 (222)
Q Consensus 102 vF~R~~~Cp~C~~el~~L~~~~~~l~~~gv~lvaIs~~s~~-~i~~f~~~~~~-pfpil~Dpd~~lyk 167 (222)
.+|...+||.|++-...|.+. ....+++-|.....+ ...+|.+.... ..|++.|.+..+++
T Consensus 2 ~Ly~~~~~~~~~~v~~~l~~~-----gi~~e~~~i~~~~~~~~~~~~~~~~p~~~vP~l~~~~~~l~e 64 (74)
T cd03045 2 DLYYLPGSPPCRAVLLTAKAL-----GLELNLKEVNLMKGEHLKPEFLKLNPQHTVPTLVDNGFVLWE 64 (74)
T ss_pred EEEeCCCCCcHHHHHHHHHHc-----CCCCEEEEecCccCCcCCHHHHhhCcCCCCCEEEECCEEEEc
Confidence 356678999999644444432 122345555443222 23456655444 36888776544433
No 262
>TIGR00591 phr2 photolyase PhrII. All proteins in this family for which functions are known are DNA-photolyases used for the direct repair of UV irradiation induced DNA damage. Some repair 6-4 photoproducts while others repair cyclobutane pyrimidine dimers. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=45.37 E-value=1.2e+02 Score=28.59 Aligned_cols=58 Identities=10% Similarity=-0.134 Sum_probs=39.5
Q ss_pred CeEEEEEEcCC-C---ChhHHHH-HHHHHHhHHHHHhCCCEEEEEcCCCHHHHHHHHHHcCCC
Q 027527 97 RKAVVAFARHF-G---CVLCRKR-ADYLAAKKDVMDASGVALVLIGPGSVEQARTFSEQTKFK 154 (222)
Q Consensus 97 ~~vvVvF~R~~-~---Cp~C~~e-l~~L~~~~~~l~~~gv~lvaIs~~s~~~i~~f~~~~~~p 154 (222)
.+++.+|+... . .+..... ...|.++.+++++.|+.+++...+..+.+.++++++++.
T Consensus 53 ~~vl~vyi~dp~~~~~~~~r~~Fl~esL~~L~~~L~~~g~~L~v~~g~~~~~l~~l~~~~~i~ 115 (454)
T TIGR00591 53 LPLHVCFCLVDFFLAATRRHYFFMLGGLDEVANECERLIIPFHLLDGPPKELLPYFVDLHAAA 115 (454)
T ss_pred CCEEEEEEeCCCcccccHHHHHHHHHHHHHHHHHHHHcCCceEEeecChHHHHHHHHHHcCCC
Confidence 35666665431 1 1222222 337777888999999999988766668889999988765
No 263
>COG0809 QueA S-adenosylmethionine:tRNA-ribosyltransferase-isomerase (queuine synthetase) [Translation, ribosomal structure and biogenesis]
Probab=45.27 E-value=73 Score=29.58 Aligned_cols=59 Identities=22% Similarity=0.472 Sum_probs=43.5
Q ss_pred HHHHhCCCEEEEEcCCCHHHHHHHHHHcCCC---C--ceeecCChHHHHHcCCccccceeec-cchhHH
Q 027527 124 DVMDASGVALVLIGPGSVEQARTFSEQTKFK---G--EVYADPNHSSYEALSFVSGVLVTFT-PKAGLK 186 (222)
Q Consensus 124 ~~l~~~gv~lvaIs~~s~~~i~~f~~~~~~p---f--pil~Dpd~~lyk~lGl~~~~~~~~~-P~a~~~ 186 (222)
.+-++.|-+||+||.-+...++..+.+.++. + .|+..|.-+ |.+...+.+.|+ |++-+-
T Consensus 243 ~~~k~~GgRIiaVGTTs~R~LEsa~~~~~~~~~sg~T~IFI~PGy~----~~~vD~LiTNFHlPkSTLl 307 (348)
T COG0809 243 NAAKARGGRIIAVGTTSVRTLESAAREAGLKAFSGWTDIFIYPGYR----FKVVDALITNFHLPKSTLL 307 (348)
T ss_pred HHHHHcCCeEEEEcchhHHHHHHHhcccCcCcCcCcccEEEcCCCc----ceeeeeeeecCcCCccHHH
Confidence 3445789999999999998888887776632 2 488888766 667777777775 876543
No 264
>cd03037 GST_N_GRX2 GST_N family, Glutaredoxin 2 (GRX2) subfamily; composed of bacterial proteins similar to E. coli GRX2, an atypical GRX with a molecular mass of about 24kD, compared with other GRXs which are 9-12kD in size. GRX2 adopts a GST fold containing an N-terminal thioredoxin-fold domain and a C-terminal alpha helical domain. It contains a redox active CXXC motif located in the N-terminal domain but is not able to reduce ribonucleotide reductase like other GRXs. However, it catalyzes GSH-dependent protein disulfide reduction of other substrates efficiently. GRX2 is thought to function primarily in catalyzing the reversible glutathionylation of proteins in cellular redox regulation including stress responses.
Probab=44.65 E-value=48 Score=22.24 Aligned_cols=48 Identities=8% Similarity=0.043 Sum_probs=24.4
Q ss_pred EcCCCChhHHHHHHHHHHhHHHHHhCCCE--EEEEcCCCHHHHHHHHHHcCC-CCceeecC
Q 027527 104 ARHFGCVLCRKRADYLAAKKDVMDASGVA--LVLIGPGSVEQARTFSEQTKF-KGEVYADP 161 (222)
Q Consensus 104 ~R~~~Cp~C~~el~~L~~~~~~l~~~gv~--lvaIs~~s~~~i~~f~~~~~~-pfpil~Dp 161 (222)
+-..+||+|++-...| ..+|+. .+.+..+... .+.+..+. ..|++.|.
T Consensus 4 y~~~~~p~~~rvr~~L-------~~~gl~~~~~~~~~~~~~---~~~~~~~~~~vP~L~~~ 54 (71)
T cd03037 4 YIYEHCPFCVKARMIA-------GLKNIPVEQIILQNDDEA---TPIRMIGAKQVPILEKD 54 (71)
T ss_pred EecCCCcHhHHHHHHH-------HHcCCCeEEEECCCCchH---HHHHhcCCCccCEEEeC
Confidence 4467899999644443 344543 3444433222 22233322 25777765
No 265
>TIGR01761 thiaz-red thiazolinyl imide reductase. This reductase is found associated with gene clusters for the biosynthesis of various non-ribosomal peptide derived natural products in which cysteine is cyclized to a thiazoline ring containing an imide double bond. Examples include yersiniabactin (irp3/YbtU) and pyochelin (PchG).
Probab=44.26 E-value=34 Score=31.56 Aligned_cols=48 Identities=17% Similarity=0.178 Sum_probs=33.9
Q ss_pred CChhHHHHHHHHHHhHHHHHhCCCEEEEEcCCCHHHHHHHHHHcCCCCceeecCC
Q 027527 108 GCVLCRKRADYLAAKKDVMDASGVALVLIGPGSVEQARTFSEQTKFKGEVYADPN 162 (222)
Q Consensus 108 ~Cp~C~~el~~L~~~~~~l~~~gv~lvaIs~~s~~~i~~f~~~~~~pfpil~Dpd 162 (222)
||.+.+.++..+++.. .++++++|.--+.+..++++++++++ .|.|-+
T Consensus 10 G~~~G~~h~~al~~~~-----~~~eLvaV~d~~~erA~~~A~~~gi~--~y~~~e 57 (343)
T TIGR01761 10 GTRFGQFYLAAFAAAP-----ERFELAGILAQGSERSRALAHRLGVP--LYCEVE 57 (343)
T ss_pred eHHHHHHHHHHHHhCC-----CCcEEEEEEcCCHHHHHHHHHHhCCC--ccCCHH
Confidence 3445555665555431 16999999999999999999999876 454433
No 266
>cd01821 Rhamnogalacturan_acetylesterase_like Rhamnogalacturan_acetylesterase_like subgroup of SGNH-hydrolases. Rhamnogalacturan acetylesterase removes acetyl esters from rhamnogalacturonan substrates, and renders them susceptible to degradation by rhamnogalacturonases. Rhamnogalacturonans are highly branched regions in pectic polysaccharides, consisting of repeating -(1,2)-L-Rha-(1,4)-D-GalUA disaccharide units, with many rhamnose residues substituted by neutral oligosaccharides such as arabinans, galactans and arabinogalactans. Extracellular enzymes participating in the degradation of plant cell wall polymers, such as Rhamnogalacturonan acetylesterase, would typically be found in saprophytic and plant pathogenic fungi and bacteria.
Probab=44.10 E-value=92 Score=25.19 Aligned_cols=43 Identities=16% Similarity=0.208 Sum_probs=32.4
Q ss_pred HHHHHHHHHhHHHHHhCCCEEEEEcCCC-----------------HHHHHHHHHHcCCCC
Q 027527 113 RKRADYLAAKKDVMDASGVALVLIGPGS-----------------VEQARTFSEQTKFKG 155 (222)
Q Consensus 113 ~~el~~L~~~~~~l~~~gv~lvaIs~~s-----------------~~~i~~f~~~~~~pf 155 (222)
.++...|+++.+++++.|+++|.+++-. .+.+++.+++++++|
T Consensus 90 ~~~~~nl~~ii~~~~~~~~~~il~tp~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~ 149 (198)
T cd01821 90 TTYKEYLRRYIAEARAKGATPILVTPVTRRTFDEGGKVEDTLGDYPAAMRELAAEEGVPL 149 (198)
T ss_pred HHHHHHHHHHHHHHHHCCCeEEEECCccccccCCCCcccccchhHHHHHHHHHHHhCCCE
Confidence 3466677788888888999998886432 257788888888875
No 267
>cd00860 ThrRS_anticodon ThrRS Threonyl-anticodon binding domain. ThrRS belongs to class II aminoacyl-tRNA synthetases (aaRS). This alignment contains the anticodon binding domain, which is responsible for specificity in tRNA-binding, so that the activated amino acid is transferred to a ribose 3' OH group of the appropriate tRNA only.
Probab=43.77 E-value=96 Score=21.50 Aligned_cols=49 Identities=8% Similarity=0.064 Sum_probs=35.3
Q ss_pred HHHHHHhHHHHHhCCCEEEEE-cCCCHHHHHHHHHHcCCCCceeecCChH
Q 027527 116 ADYLAAKKDVMDASGVALVLI-GPGSVEQARTFSEQTKFKGEVYADPNHS 164 (222)
Q Consensus 116 l~~L~~~~~~l~~~gv~lvaI-s~~s~~~i~~f~~~~~~pfpil~Dpd~~ 164 (222)
.....++..++++.|+.+..- ...+....-+++++.|+|+-++.+.+..
T Consensus 14 ~~~a~~~~~~Lr~~g~~v~~d~~~~~~~~~~~~a~~~g~~~~iiig~~e~ 63 (91)
T cd00860 14 LDYAKEVAKKLSDAGIRVEVDLRNEKLGKKIREAQLQKIPYILVVGDKEV 63 (91)
T ss_pred HHHHHHHHHHHHHCCCEEEEECCCCCHHHHHHHHHHcCCCEEEEECcchh
Confidence 334445567778889887663 4445667778889999999988886654
No 268
>cd03051 GST_N_GTT2_like GST_N family, Saccharomyces cerevisiae GTT2-like subfamily; composed of predominantly uncharacterized proteins with similarity to the S. cerevisiae GST protein, GTT2. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. GTT2, a homodimer, exhibits GST activity with standard substrates. Strains with deleted GTT2 genes are viable but exhibit increased sensitivity to heat shock.
Probab=42.43 E-value=68 Score=21.13 Aligned_cols=56 Identities=16% Similarity=0.080 Sum_probs=30.3
Q ss_pred EEEcCCCChhHHHHHHHHHHhHHHHHhCCCEEEEEcCCCH-HHHHHHHHHcCC-CCceeecCC
Q 027527 102 AFARHFGCVLCRKRADYLAAKKDVMDASGVALVLIGPGSV-EQARTFSEQTKF-KGEVYADPN 162 (222)
Q Consensus 102 vF~R~~~Cp~C~~el~~L~~~~~~l~~~gv~lvaIs~~s~-~~i~~f~~~~~~-pfpil~Dpd 162 (222)
.+|...+||.|++-...|.+.. ...+++-|..... .....|.+.... ..|++.+.+
T Consensus 2 ~Ly~~~~s~~~~~~~~~L~~~~-----l~~~~~~v~~~~~~~~~~~~~~~~p~~~vP~l~~~~ 59 (74)
T cd03051 2 KLYDSPTAPNPRRVRIFLAEKG-----IDVPLVTVDLAAGEQRSPEFLAKNPAGTVPVLELDD 59 (74)
T ss_pred EEEeCCCCcchHHHHHHHHHcC-----CCceEEEeecccCccCCHHHHhhCCCCCCCEEEeCC
Confidence 3567789999998666655442 2233444443221 122345555444 368776433
No 269
>PF13714 PEP_mutase: Phosphoenolpyruvate phosphomutase; PDB: 1ZLP_A 3EOO_C 1UJQ_D 1O5Q_A 2DUA_A 2HJP_A 2HRW_A 2QIW_A 3KZ2_B 3IH1_B ....
Probab=42.28 E-value=1.7e+02 Score=25.40 Aligned_cols=76 Identities=14% Similarity=0.118 Sum_probs=44.6
Q ss_pred EEEEEcCCCChhHHHHHHHHHHhHHHHHhCCCEEEEE-cCCCHHHHHHHHHHcCCCCceeec---CChHHHHHcCCcccc
Q 027527 100 VVAFARHFGCVLCRKRADYLAAKKDVMDASGVALVLI-GPGSVEQARTFSEQTKFKGEVYAD---PNHSSYEALSFVSGV 175 (222)
Q Consensus 100 vVvF~R~~~Cp~C~~el~~L~~~~~~l~~~gv~lvaI-s~~s~~~i~~f~~~~~~pfpil~D---pd~~lyk~lGl~~~~ 175 (222)
++|+-|-.-...-.+-+.+--+....+.+.|...|.| +..+.+++++|+++.++|.-+... .+.+-++.+|+.+-.
T Consensus 138 ~~I~ARTDa~~~~~~~~deaI~R~~aY~eAGAD~ifi~~~~~~~~i~~~~~~~~~Pl~v~~~~~~~~~~eL~~lGv~~v~ 217 (238)
T PF13714_consen 138 FVIIARTDAFLRAEEGLDEAIERAKAYAEAGADMIFIPGLQSEEEIERIVKAVDGPLNVNPGPGTLSAEELAELGVKRVS 217 (238)
T ss_dssp SEEEEEECHHCHHHHHHHHHHHHHHHHHHTT-SEEEETTSSSHHHHHHHHHHHSSEEEEETTSSSS-HHHHHHTTESEEE
T ss_pred EEEEEeccccccCCCCHHHHHHHHHHHHHcCCCEEEeCCCCCHHHHHHHHHhcCCCEEEEcCCCCCCHHHHHHCCCcEEE
Confidence 5555554321111222333333445567899998877 556788999999999776544442 344557778876653
No 270
>PRK06683 hypothetical protein; Provisional
Probab=41.45 E-value=86 Score=22.74 Aligned_cols=52 Identities=10% Similarity=-0.018 Sum_probs=37.8
Q ss_pred HHHHHhCCCEEEEEcCCCH----HHHHHHHHHcCCCCceeecCChHHHHHcCCcccc
Q 027527 123 KDVMDASGVALVLIGPGSV----EQARTFSEQTKFKGEVYADPNHSSYEALSFVSGV 175 (222)
Q Consensus 123 ~~~l~~~gv~lvaIs~~s~----~~i~~f~~~~~~pfpil~Dpd~~lyk~lGl~~~~ 175 (222)
...++...+++|.|..|-. +.+..+++++++|+- +.+...++-++.|+..+.
T Consensus 20 ~kaik~gkaklViiA~Da~~~~~~~i~~~~~~~~Vpv~-~~~t~~eLG~A~G~~~~~ 75 (82)
T PRK06683 20 LEAIKNGIVKEVVIAEDADMRLTHVIIRTALQHNIPIT-KVESVRKLGKVAGIQVGA 75 (82)
T ss_pred HHHHHcCCeeEEEEECCCCHHHHHHHHHHHHhcCCCEE-EECCHHHHHHHhCCcccE
Confidence 3455566788888888855 344556898899884 445778999999987764
No 271
>TIGR01616 nitro_assoc nitrogenase-associated protein. This model describes a small family of uncharacterized proteins found so far in alpha and gamma proteobacteria and in Nostoc sp. PCC 7120, a cyanobacterium. The gene for this protein is associated with nitrogenase genes. This family shows sequence similarity to TIGR00014, a glutaredoxin-dependent arsenate reductase that converts arsentate to arsenite for disposal. This family is one of several included in Pfam model pfam03960.
Probab=41.31 E-value=89 Score=24.50 Aligned_cols=64 Identities=13% Similarity=0.157 Sum_probs=45.1
Q ss_pred EEEEcCCCChhHHHHHHHHHHhHHHHHhCCCEEEEEc--CC--CHHHHHHHHHHcCCCCceeecCChHHHHHcCCcc
Q 027527 101 VAFARHFGCVLCRKRADYLAAKKDVMDASGVALVLIG--PG--SVEQARTFSEQTKFKGEVYADPNHSSYEALSFVS 173 (222)
Q Consensus 101 VvF~R~~~Cp~C~~el~~L~~~~~~l~~~gv~lvaIs--~~--s~~~i~~f~~~~~~pfpil~Dpd~~lyk~lGl~~ 173 (222)
+.+|-...|.-|++-...|.+ +|+..-.+. .+ +.++++.|.+..+ ..-+.......|+.++...
T Consensus 3 i~iY~~p~Cst~RKA~~~L~~-------~gi~~~~~d~~~~p~t~~eL~~~l~~~g--~~~lin~~~~~~r~l~~~~ 70 (126)
T TIGR01616 3 IIFYEKPGCANNARQKAALKA-------SGHDVEVQDILKEPWHADTLRPYFGNKP--VGSWFNRAAPRVKSGEVNP 70 (126)
T ss_pred EEEEeCCCCHHHHHHHHHHHH-------CCCCcEEEeccCCCcCHHHHHHHHHHcC--HHHHHhccchHhhhCCCCc
Confidence 457888999999987766654 455554443 33 4589999999854 4455567788899888543
No 272
>KOG1615 consensus Phosphoserine phosphatase [Amino acid transport and metabolism]
Probab=40.88 E-value=67 Score=27.89 Aligned_cols=47 Identities=19% Similarity=0.203 Sum_probs=37.1
Q ss_pred HHHhHHHHHhCCCEEEEEcCCCHHHHHHHHHHcCCCC------ceeecCChHH
Q 027527 119 LAAKKDVMDASGVALVLIGPGSVEQARTFSEQTKFKG------EVYADPNHSS 165 (222)
Q Consensus 119 L~~~~~~l~~~gv~lvaIs~~s~~~i~~f~~~~~~pf------pil~Dpd~~l 165 (222)
+.++-..+.+.|++|+.||-|=...+..-+.++++|+ .++.|.++++
T Consensus 93 i~eLv~~L~~~~~~v~liSGGF~~~i~~Va~~Lgi~~~n~yAN~l~fd~~Gk~ 145 (227)
T KOG1615|consen 93 IRELVSRLHARGTQVYLISGGFRQLIEPVAEQLGIPKSNIYANELLFDKDGKY 145 (227)
T ss_pred HHHHHHHHHHcCCeEEEEcCChHHHHHHHHHHhCCcHhhhhhheeeeccCCcc
Confidence 4556677889999999999998778888889999998 3555666653
No 273
>PHA03398 viral phosphatase superfamily protein; Provisional
Probab=40.71 E-value=66 Score=29.35 Aligned_cols=77 Identities=19% Similarity=0.235 Sum_probs=54.9
Q ss_pred cCCCcEEecCCCCeEeCCCccCCCeEEEEEEcCCCChhHHHHHHHHHHhHHHHHhCCCEEEEEcCCCHHHHHHHHHHcCC
Q 027527 74 LLDTVKVYDVNGNAIPISDLWKDRKAVVAFARHFGCVLCRKRADYLAAKKDVMDASGVALVLIGPGSVEQARTFSEQTKF 153 (222)
Q Consensus 74 ~apdf~L~D~~G~~v~Lsdl~~~~~vvVvF~R~~~Cp~C~~el~~L~~~~~~l~~~gv~lvaIs~~s~~~i~~f~~~~~~ 153 (222)
..|.+-+.|.||..++-.+- +-+ .-+...+..++++++|+.+..++.++.+.+....+..++
T Consensus 126 ~~~~~i~~D~D~TL~~~~~~-----v~i-------------rdp~V~EtL~eLkekGikLaIvTNg~Re~v~~~Le~lgL 187 (303)
T PHA03398 126 EIPHVIVFDLDSTLITDEEP-----VRI-------------RDPFVYDSLDELKERGCVLVLWSYGNREHVVHSLKETKL 187 (303)
T ss_pred eeccEEEEecCCCccCCCCc-----ccc-------------CChhHHHHHHHHHHCCCEEEEEcCCChHHHHHHHHHcCC
Confidence 45667778888877654321 100 024666788889999999999998988999999999998
Q ss_pred C--CceeecCChHHHHH
Q 027527 154 K--GEVYADPNHSSYEA 168 (222)
Q Consensus 154 p--fpil~Dpd~~lyk~ 168 (222)
+ |+++.-.+...++.
T Consensus 188 ~~yFDvII~~g~i~~k~ 204 (303)
T PHA03398 188 EGYFDIIICGGRKAGEY 204 (303)
T ss_pred CccccEEEECCCccccc
Confidence 8 66666555555554
No 274
>PF13417 GST_N_3: Glutathione S-transferase, N-terminal domain; PDB: 3ERG_B 3IBH_A 3ERF_A 3UBL_A 3UBK_A 3IR4_A 3M8N_B 2R4V_A 2PER_A 2R5G_A ....
Probab=40.09 E-value=19 Score=24.82 Aligned_cols=56 Identities=20% Similarity=0.078 Sum_probs=29.9
Q ss_pred EcCCCChhHHHHHHHHHHhHHHHHhCCCEEEEEcCCCHHHHHHHHHHcCC-CCceeecCChHHH
Q 027527 104 ARHFGCVLCRKRADYLAAKKDVMDASGVALVLIGPGSVEQARTFSEQTKF-KGEVYADPNHSSY 166 (222)
Q Consensus 104 ~R~~~Cp~C~~el~~L~~~~~~l~~~gv~lvaIs~~s~~~i~~f~~~~~~-pfpil~Dpd~~ly 166 (222)
+...+||+|++-.-.|+.. ....+++-|..+.. -..|.+.... ..|++.|.+..++
T Consensus 2 y~~~~Sp~~~kv~~~l~~~-----~i~~~~~~v~~~~~--~~~~~~~~p~~~vPvL~~~g~~l~ 58 (75)
T PF13417_consen 2 YGFPGSPYSQKVRLALEEK-----GIPYELVPVDPEEK--RPEFLKLNPKGKVPVLVDDGEVLT 58 (75)
T ss_dssp EEETTSHHHHHHHHHHHHH-----TEEEEEEEEBTTST--SHHHHHHSTTSBSSEEEETTEEEE
T ss_pred CCcCCChHHHHHHHHHHHc-----CCeEEEeccCcccc--hhHHHhhcccccceEEEECCEEEe
Confidence 4568999999744443322 22244555555442 3444444432 3677776654433
No 275
>PF12710 HAD: haloacid dehalogenase-like hydrolase; PDB: 3P96_A 3N28_A 3FVV_A 1RKU_A 1RKV_A 1Y8A_A 2FEA_B 3KD3_B.
Probab=38.42 E-value=38 Score=26.94 Aligned_cols=35 Identities=11% Similarity=0.215 Sum_probs=29.7
Q ss_pred HhHHHHHhCCCEEEEEcCCCHHHHHHHHHHcCCCC
Q 027527 121 AKKDVMDASGVALVLIGPGSVEQARTFSEQTKFKG 155 (222)
Q Consensus 121 ~~~~~l~~~gv~lvaIs~~s~~~i~~f~~~~~~pf 155 (222)
++..++++.|++++.|+.+....++.+++..+++.
T Consensus 96 e~i~~~~~~~~~v~IvS~~~~~~i~~~~~~~~i~~ 130 (192)
T PF12710_consen 96 ELIRELKDNGIKVVIVSGSPDEIIEPIAERLGIDD 130 (192)
T ss_dssp HHHHHHHHTTSEEEEEEEEEHHHHHHHHHHTTSSE
T ss_pred HHHHHHHHCCCEEEEECCCcHHHHHHHHHHcCCCc
Confidence 44555678899999999998889999999999985
No 276
>TIGR02463 MPGP_rel mannosyl-3-phosphoglycerate phosphatase-related protein. This family consists of members of the HAD superfamily, subfamily IIB. All members are closely related to mannosyl-3-phosphoglycerate phosphatase, the second enzyme in a two-step pathway for biosynthesis of mannosylglycerate, a compatible solute present in some thermophiles and in Dehalococcoides ethenogenes. However, members of this family are separable in a neighbor-joining tree constructed from a multiple sequence alignment and are found only in mesophiles that lack the companion mannosyl-3-phosphoglycerate synthase (TIGR02460). Members of this family are like to act on a compound related to yet distinct from mannosyl-3-phosphoglycerate.
Probab=38.24 E-value=69 Score=26.50 Aligned_cols=48 Identities=8% Similarity=0.117 Sum_probs=38.4
Q ss_pred HHhHHHHHhCCCEEEEEcCCCHHHHHHHHHHcCCC-CceeecCChHHHH
Q 027527 120 AAKKDVMDASGVALVLIGPGSVEQARTFSEQTKFK-GEVYADPNHSSYE 167 (222)
Q Consensus 120 ~~~~~~l~~~gv~lvaIs~~s~~~i~~f~~~~~~p-fpil~Dpd~~lyk 167 (222)
.+...+++++|+.++.++--+...++.+.++.+++ .++++.....+|.
T Consensus 22 ~~~l~~l~~~gi~~~i~TgR~~~~~~~~~~~l~~~~~~~I~~NGa~i~~ 70 (221)
T TIGR02463 22 APWLTRLQEAGIPVILCTSKTAAEVEYLQKALGLTGDPYIAENGAAIHL 70 (221)
T ss_pred HHHHHHHHHCCCeEEEEcCCCHHHHHHHHHHcCCCCCcEEEeCCcEEEc
Confidence 34556678899999999999999999999999987 6777776666654
No 277
>PLN02311 chalcone isomerase
Probab=38.22 E-value=68 Score=28.77 Aligned_cols=90 Identities=8% Similarity=0.036 Sum_probs=47.1
Q ss_pred CcccccccccCCceeeecccCCCCceeeccCCCCCCC-ccccCCccccccCCCCcee-ecccCC--CCCCCCccccCcCC
Q 027527 1 MAISLSTALSPNTTVRFNRLTNPAPTRILPNQSPLWR-PRHWNKTLKLSPRRPSHVI-ASAVSE--SPPSVSEDTKNLLD 76 (222)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~-~~~~s~--~~~~~~~~~g~~ap 76 (222)
||.|++.|-. .+.++---+.|+-.+.|+|+++++.- |. +.++....-.-..|.+ ++..|. -....+..+|-++|
T Consensus 1 ~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ep~TgV~Fp 78 (271)
T PLN02311 1 LRMSCRNTDN-AESIYHFPGKSPNRVSVLQTGNTVSDSPN-SLLKHRHCNEISRVIVKSAAFSVGSAEYAEETATSVKFQ 78 (271)
T ss_pred CCcccccchh-hhheeecCCCCCCCceEcccCCccccccc-ccccccccCcccceeeeccccccCcccceecCCcCCcCC
Confidence 5667777666 45555556778888899999987764 32 3333222222222333 222222 22444456666666
Q ss_pred CcEEecCCCCeEeCCC
Q 027527 77 TVKVYDVNGNAIPISD 92 (222)
Q Consensus 77 df~L~D~~G~~v~Lsd 92 (222)
+..-....+++..|.-
T Consensus 79 ~~v~~~~~s~~L~LnG 94 (271)
T PLN02311 79 RSLTLPGCSSPLSLLG 94 (271)
T ss_pred ccccCCCCCCceeEee
Confidence 5542222235555544
No 278
>cd01453 vWA_transcription_factor_IIH_type Transcription factors IIH type: TFIIH is a multiprotein complex that is one of the five general transcription factors that binds RNA polymerase II holoenzyme. Orthologues of these genes are found in all completed eukaryotic genomes and all these proteins contain a VWA domain. The p44 subunit of TFIIH functions as a DNA helicase in RNA polymerase II transcription initiation and DNA repair, and its transcriptional activity is dependent on its C-terminal Zn-binding domains. The function of the vWA domain is unclear, but may be involved in complex assembly. The MIDAS motif is not conserved in this sub-group.
Probab=37.88 E-value=1.4e+02 Score=24.55 Aligned_cols=43 Identities=14% Similarity=0.162 Sum_probs=31.4
Q ss_pred HHhHHHHHhCCCEEEEEcCCCH-HHHHHHHHHcCCCCceeecCC
Q 027527 120 AAKKDVMDASGVALVLIGPGSV-EQARTFSEQTKFKGEVYADPN 162 (222)
Q Consensus 120 ~~~~~~l~~~gv~lvaIs~~s~-~~i~~f~~~~~~pfpil~Dpd 162 (222)
.+..+++++.|++|..|+.++. +.+++.++.++=.|-...|++
T Consensus 126 ~~~~~~l~~~~I~v~~IgiG~~~~~L~~ia~~tgG~~~~~~~~~ 169 (183)
T cd01453 126 YETIDKLKKENIRVSVIGLSAEMHICKEICKATNGTYKVILDET 169 (183)
T ss_pred HHHHHHHHHcCcEEEEEEechHHHHHHHHHHHhCCeeEeeCCHH
Confidence 3456667788999888887754 568889998887765556653
No 279
>TIGR02765 crypto_DASH cryptochrome, DASH family. Photolyases and cryptochromes are related flavoproteins. Photolyases harness the energy of blue light to repair DNA damage by removing pyrimidine dimers. Cryptochromes do not repair DNA and are presumed to act instead in some other (possibly unknown) process such as entraining circadian rhythms. This model describes the cryptochrome DASH subfamily, one of at least five major subfamilies, which is found in plants, animals, marine bacteria, etc. Members of this family bind both folate and FAD. They may show weak photolyase activity in vitro but have not been shown to affect DNA repair in vivo. Rather, DASH family cryptochromes have been shown to bind RNA (Vibrio cholerae VC1814), or DNA, and seem likely to act in light-responsive regulatory processes.
Probab=37.75 E-value=81 Score=29.44 Aligned_cols=46 Identities=9% Similarity=0.140 Sum_probs=35.6
Q ss_pred HHHHHHhHHHHHhCCCEEEEEcCCCHHHHHHHHHHcCCCCceeecCC
Q 027527 116 ADYLAAKKDVMDASGVALVLIGPGSVEQARTFSEQTKFKGEVYADPN 162 (222)
Q Consensus 116 l~~L~~~~~~l~~~gv~lvaIs~~s~~~i~~f~~~~~~pfpil~Dpd 162 (222)
+..|.++.+++++.|+.+++...+..+.+.++++++++.- |++|.+
T Consensus 60 ~esL~~L~~~L~~~g~~L~v~~G~~~~vl~~L~~~~~~~~-V~~~~~ 105 (429)
T TIGR02765 60 LESLKDLRTSLRKLGSDLLVRSGKPEDVLPELIKELGVRT-VFLHQE 105 (429)
T ss_pred HHHHHHHHHHHHHcCCCeEEEeCCHHHHHHHHHHHhCCCE-EEEecc
Confidence 3578888899999999998886666688899999887643 566543
No 280
>PRK11320 prpB 2-methylisocitrate lyase; Provisional
Probab=37.62 E-value=1.9e+02 Score=26.14 Aligned_cols=56 Identities=9% Similarity=0.108 Sum_probs=38.0
Q ss_pred HhHHHHHhCCCEEEEE-cCCCHHHHHHHHHHcCCCC--ceeec-----CChHHHHHcCCccccc
Q 027527 121 AKKDVMDASGVALVLI-GPGSVEQARTFSEQTKFKG--EVYAD-----PNHSSYEALSFVSGVL 176 (222)
Q Consensus 121 ~~~~~l~~~gv~lvaI-s~~s~~~i~~f~~~~~~pf--pil~D-----pd~~lyk~lGl~~~~~ 176 (222)
+....+.+.|...|.| +..+.+++++++++...|. .+..- .+.+-.+.+|+++-..
T Consensus 170 ~Ra~aY~eAGAD~ifi~~~~~~~~i~~~~~~~~~Pl~~n~~~~~~~p~~s~~~L~~lGv~~v~~ 233 (292)
T PRK11320 170 ERAQAYVEAGADMIFPEAMTELEMYRRFADAVKVPILANITEFGATPLFTTEELASAGVAMVLY 233 (292)
T ss_pred HHHHHHHHcCCCEEEecCCCCHHHHHHHHHhcCCCEEEEeccCCCCCCCCHHHHHHcCCcEEEE
Confidence 3355677899998887 5677899999999876653 22211 1345577788877643
No 281
>cd03031 GRX_GRX_like Glutaredoxin (GRX) family, GRX-like domain containing protein subfamily; composed of uncharacterized eukaryotic proteins containing a GRX-like domain having only one conserved cysteine, aligning to the C-terminal cysteine of the CXXC motif of GRXs. This subfamily is predominantly composed of plant proteins. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins via a redox active CXXC motif using a similar dithiol mechanism employed by TRXs. GRX has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. Proteins containing only the C-terminal cysteine are generally redox inactive.
Probab=37.31 E-value=1.4e+02 Score=24.12 Aligned_cols=38 Identities=8% Similarity=-0.042 Sum_probs=20.6
Q ss_pred CChhHHHHHHHHHHhHHHHHhCCCEEEEEcCCC-HHHHHHHHHHcC
Q 027527 108 GCVLCRKRADYLAAKKDVMDASGVALVLIGPGS-VEQARTFSEQTK 152 (222)
Q Consensus 108 ~Cp~C~~el~~L~~~~~~l~~~gv~lvaIs~~s-~~~i~~f~~~~~ 152 (222)
+||.|++--.. |++.+|.+--+..+. .+..++..+..+
T Consensus 15 t~~~C~~ak~i-------L~~~~V~~~e~DVs~~~~~~~EL~~~~g 53 (147)
T cd03031 15 TFEDCNNVRAI-------LESFRVKFDERDVSMDSGFREELRELLG 53 (147)
T ss_pred cChhHHHHHHH-------HHHCCCcEEEEECCCCHHHHHHHHHHhC
Confidence 89999854333 345566666565543 333334444333
No 282
>PLN02640 glucose-6-phosphate 1-dehydrogenase
Probab=37.19 E-value=1.1e+02 Score=30.35 Aligned_cols=46 Identities=9% Similarity=-0.091 Sum_probs=38.5
Q ss_pred CCeEEEEEEcCCCChhHHHHHHHHHHhHHH-HHhCCCEEEEEcCCCH
Q 027527 96 DRKAVVAFARHFGCVLCRKRADYLAAKKDV-MDASGVALVLIGPGSV 141 (222)
Q Consensus 96 ~~~vvVvF~R~~~Cp~C~~el~~L~~~~~~-l~~~gv~lvaIs~~s~ 141 (222)
..+..||.|-++|.---|+-++.|-+++.. +-..++.||+++..+.
T Consensus 86 ~~~~~iVIFGATGDLA~RKL~PALy~L~~~g~Lp~~~~IIG~aR~~~ 132 (573)
T PLN02640 86 ESTLSITVVGASGDLAKKKIFPALFALFYEDWLPENFTVFGYARTKL 132 (573)
T ss_pred CCCeEEEEeCCccHhhhhhHHHHHHHHHHcCCCCCCCEEEEEECCCC
Confidence 347899999999999999999999999754 4456899999998743
No 283
>TIGR01428 HAD_type_II 2-haloalkanoic acid dehalogenase, type II. Note that the Type I HAD enzymes have not yet been fully characterized, but clearly utilize a substantially different catalytic mechanism and are thus unlikely to be related.
Probab=36.93 E-value=1e+02 Score=24.93 Aligned_cols=40 Identities=13% Similarity=0.224 Sum_probs=31.6
Q ss_pred HHHHHhHHHHHhCCCEEEEEcCCCHHHHHHHHHHcCCC--Cc
Q 027527 117 DYLAAKKDVMDASGVALVLIGPGSVEQARTFSEQTKFK--GE 156 (222)
Q Consensus 117 ~~L~~~~~~l~~~gv~lvaIs~~s~~~i~~f~~~~~~p--fp 156 (222)
+...+..++++++|+++.+++.++.+.++...+..++. |+
T Consensus 95 ~~~~~~L~~L~~~g~~~~i~Sn~~~~~~~~~l~~~gl~~~fd 136 (198)
T TIGR01428 95 PDVPAGLRALKERGYRLAILSNGSPAMLKSLVKHAGLDDPFD 136 (198)
T ss_pred CCHHHHHHHHHHCCCeEEEEeCCCHHHHHHHHHHCCChhhhh
Confidence 34455566778889999999999988888888888874 55
No 284
>PF05116 S6PP: Sucrose-6F-phosphate phosphohydrolase; InterPro: IPR006380 This family of sequences represent sucrose phosphate phosphohydrolase (SPP) from plants and cyanobacteria []. SPP is a member of the Class IIB subfamily of the haloacid dehalogenase (HAD) superfamily of aspartate-nucleophile hydrolases. SPP catalyzes the final step in the biosynthesis of sucrose, a critically important molecule for plants. Sucrose phosphate synthase (SPS), the prior step in the biosynthesis of sucrose contains a domain which exhibits considerable similarity to SPP albeit without conservation of the catalytic residues. The catalytic machinery of the synthase resides in another domain. It seems likely that the phosphatase-like domain is involved in substrate binding, possibly binding both substrates in a "product-like" orientation prior to ligation by the synthase catalytic domain.; PDB: 1TJ5_A 2B1Q_A 1TJ4_A 1S2O_A 1U2T_A 2D2V_A 1TJ3_A 1U2S_A 2B1R_A 3GYG_B ....
Probab=36.49 E-value=84 Score=27.13 Aligned_cols=58 Identities=9% Similarity=0.023 Sum_probs=42.4
Q ss_pred hhHHHHHHHHHHhHHHHHhCCCEEEEEcCCCHHHHHHHHHHcCCCCc--eeecCChHHHH
Q 027527 110 VLCRKRADYLAAKKDVMDASGVALVLIGPGSVEQARTFSEQTKFKGE--VYADPNHSSYE 167 (222)
Q Consensus 110 p~C~~el~~L~~~~~~l~~~gv~lvaIs~~s~~~i~~f~~~~~~pfp--il~Dpd~~lyk 167 (222)
..+...+..|.+..+.....++.++.+.--+.+.+++..++.+++.| +++|-..++|.
T Consensus 15 ~~~~~~~~~l~~~l~~~~~~~~~~v~~TGRs~~~~~~~~~~~~l~~Pd~~I~svGt~I~~ 74 (247)
T PF05116_consen 15 DGDDEALARLEELLEQQARPEILFVYVTGRSLESVLRLLREYNLPQPDYIITSVGTEIYY 74 (247)
T ss_dssp HCHHHHHHHHHHHHHHHHCCGEEEEEE-SS-HHHHHHHHHHCT-EE-SEEEETTTTEEEE
T ss_pred CCCHHHHHHHHHHHHHhhCCCceEEEECCCCHHHHHHHHHhCCCCCCCEEEecCCeEEEE
Confidence 55667777777777644567787777777788999999999898876 88888888877
No 285
>cd03040 GST_N_mPGES2 GST_N family; microsomal Prostaglandin E synthase Type 2 (mPGES2) subfamily; mPGES2 is a membrane-anchored dimeric protein containing a CXXC motif which catalyzes the isomerization of PGH2 to PGE2. Unlike cytosolic PGE synthase (cPGES) and microsomal PGES Type 1 (mPGES1), mPGES2 does not require glutathione (GSH) for its activity, although its catalytic rate is increased two- to four-fold in the presence of DTT, GSH or other thiol compounds. PGE2 is widely distributed in various tissues and is implicated in the sleep/wake cycle, relaxation/contraction of smooth muscle, excretion of sodium ions, maintenance of body temperature and mediation of inflammation. mPGES2 contains an N-terminal hydrophobic domain which is membrane associated, and a C-terminal soluble domain with a GST-like structure.
Probab=35.79 E-value=48 Score=22.58 Aligned_cols=52 Identities=13% Similarity=0.307 Sum_probs=27.1
Q ss_pred EEEEcCCCChhHHHHHHHHHHhHHHHHhCCCEEEEEcCCCHHHHHHHHHHcCC-CCceeecC
Q 027527 101 VAFARHFGCVLCRKRADYLAAKKDVMDASGVALVLIGPGSVEQARTFSEQTKF-KGEVYADP 161 (222)
Q Consensus 101 VvF~R~~~Cp~C~~el~~L~~~~~~l~~~gv~lvaIs~~s~~~i~~f~~~~~~-pfpil~Dp 161 (222)
+.+|-...||+|++-...|. ++|+..-.+..+... ..++ +..+. ..|++.|.
T Consensus 2 i~Ly~~~~~p~c~kv~~~L~-------~~gi~y~~~~~~~~~-~~~~-~~~~~~~vP~l~~~ 54 (77)
T cd03040 2 ITLYQYKTCPFCCKVRAFLD-------YHGIPYEVVEVNPVS-RKEI-KWSSYKKVPILRVE 54 (77)
T ss_pred EEEEEcCCCHHHHHHHHHHH-------HCCCceEEEECCchh-HHHH-HHhCCCccCEEEEC
Confidence 34566788999997655444 445544333333221 1222 22232 36777755
No 286
>cd01026 TOPRIM_OLD TOPRIM_OLD: topoisomerase-primase (TOPRIM) nucleotidyl transferase/hydrolase domain of the type found in bacterial and archaeal nucleases of the OLD (overcome lysogenization defect) family. The bacteriophage P2 OLD protein, which has DNase as well as RNase activity, consists of an N-terminal ABC-type ATPase domain and a C-terminal Toprim domain; the nuclease activity of OLD is stimulated by ATP, though the ATPase activity is not DNA-dependent. Functional details on OLD are scant and further experimentation is required to define the relationship between the ATPase and Toprim nuclease domains. The TOPRIM domain has two conserved motifs, one of which centers at a conserved glutamate and the other one at two conserved aspartates (DxD). The conserved glutamate may act as a general acid in strand cleavage by nucleases. The DXD motif may co-ordinate Mg2+, a cofactor required for full catalytic function.
Probab=35.71 E-value=1.5e+02 Score=21.51 Aligned_cols=41 Identities=12% Similarity=0.225 Sum_probs=33.8
Q ss_pred HHHhCCCEEEEEcCCCHHHHHHHHHHcCCCCceeecCChHH
Q 027527 125 VMDASGVALVLIGPGSVEQARTFSEQTKFKGEVYADPNHSS 165 (222)
Q Consensus 125 ~l~~~gv~lvaIs~~s~~~i~~f~~~~~~pfpil~Dpd~~l 165 (222)
.+...++.||.++-.+......+....++|.-++.|.|..-
T Consensus 28 ~~~~~~i~ii~~gG~~~~~~~~ll~~~~i~~~vi~D~D~~~ 68 (97)
T cd01026 28 DLDEAGISIIPVGGKNFKPFIKLLNALGIPVAVLTDLDAKR 68 (97)
T ss_pred CHHHCCEEEEEeCCcchHHHHHHHHHcCCCEEEEEeCCCCC
Confidence 36778999999987766777788888899999999988754
No 287
>TIGR01488 HAD-SF-IB Haloacid Dehalogenase superfamily, subfamily IB, phosphoserine phosphatase-like. Subfamily IA includes the enzyme phosphoserine phosphatase (TIGR00338) as well as three hypothetical equivalogs. Many members of these hypothetical equivalogs have been annotated as PSPase-like or PSPase-family proteins. In particular, the hypothetical equivalog which appears to be most closely related to PSPase contains only Archaea (while TIGR00338 contains only eukaryotes and bacteria) of which some are annotated as PSPases. Although this is a reasonable conjecture, none of these sequences has sufficient evidence for this assignment. If such should be found, this model should be retired while the PSPase model should be broadened to include these sequences.
Probab=35.06 E-value=79 Score=24.78 Aligned_cols=37 Identities=11% Similarity=0.071 Sum_probs=29.9
Q ss_pred HHHHhHHHHHhCCCEEEEEcCCCHHHHHHHHHHcCCC
Q 027527 118 YLAAKKDVMDASGVALVLIGPGSVEQARTFSEQTKFK 154 (222)
Q Consensus 118 ~L~~~~~~l~~~gv~lvaIs~~s~~~i~~f~~~~~~p 154 (222)
.+.+..+.+++.|+.++.|+.+....++...+.++++
T Consensus 77 g~~~~l~~l~~~g~~~~ivS~~~~~~i~~~~~~~g~~ 113 (177)
T TIGR01488 77 GARELISWLKERGIDTVIVSGGFDFFVEPVAEKLGID 113 (177)
T ss_pred CHHHHHHHHHHCCCEEEEECCCcHHHHHHHHHHcCCc
Confidence 3444556777899999999999888899999988876
No 288
>PF04278 Tic22: Tic22-like family; InterPro: IPR007378 Chloroplast function requires the import of nuclear encoded proteins from the cytoplasm across the chloroplast double membrane. This is accompished by two protein complexes, the Toc complex located at the outer membrane and the Tic complex loacted at the inner membrane []. The Toc complex recognises specific proteins by a cleavable N-terminal sequence and is primarily responsible for translocation through the outer membrane, while the Tic complex translocates the protein through the inner membrane. This entry represents Tic22, a core member of the Tic complex. It is believed to act as a link between both protein complexes, contacting the translocated protein in the intermembrane space after transport through the Toc complex, and directing it to the Tic complex [].; PDB: 4EV1_A.
Probab=34.93 E-value=37 Score=30.34 Aligned_cols=85 Identities=16% Similarity=0.214 Sum_probs=41.2
Q ss_pred cccCcCCCcEEecCCCCeEeCCCccC-CCeEEEEEEcCCCChhHHHHHHHHHHhH----HHHHhCCCEEEEEcCCCHHHH
Q 027527 70 DTKNLLDTVKVYDVNGNAIPISDLWK-DRKAVVAFARHFGCVLCRKRADYLAAKK----DVMDASGVALVLIGPGSVEQA 144 (222)
Q Consensus 70 ~~g~~apdf~L~D~~G~~v~Lsdl~~-~~~vvVvF~R~~~Cp~C~~el~~L~~~~----~~l~~~gv~lvaIs~~s~~~i 144 (222)
+-.+.+|=|.+.|.+|+++-..+--+ ++.+.++|+ |++++..+-+.. +++ ..+++|+.|+-+..-++
T Consensus 70 ~kL~~VPVF~itn~~G~p~l~~~~~~~~~~v~~~F~-------s~~dA~~~L~~lk~~~p~~-~~~~kV~pvsL~~vY~l 141 (274)
T PF04278_consen 70 EKLAGVPVFTITNSQGEPVLVSGPDQGGKSVGLFFF-------SQQDAEAFLAQLKKSNPEL-ASGAKVVPVSLGKVYQL 141 (274)
T ss_dssp HHHTTSEEEEEE-TT--B-----TTS--SEEEEEES--------HHHHHHHHHHHHH-SSHH-HTT-EEEEEEHHHHHHH
T ss_pred HHhcCceEEEEECCCCCEEEeccCCCCCceEEEEEe-------cHHHHHHHHHHHhhhCccc-cCceEEEEecHHHHHHH
Confidence 33556888889999999987776421 234445444 666666544432 223 67899999998866433
Q ss_pred -HHH-HHHcCCCCceeecCC
Q 027527 145 -RTF-SEQTKFKGEVYADPN 162 (222)
Q Consensus 145 -~~f-~~~~~~pfpil~Dpd 162 (222)
++. .+..++.|.++.|+.
T Consensus 142 ~~~~~~k~~~~~F~~vP~~~ 161 (274)
T PF04278_consen 142 AQENKKKPEGLQFRFVPDPK 161 (274)
T ss_dssp HHHTTT-TT-EEEEEE--HH
T ss_pred HHHhhcCCcCceEEEcCCHH
Confidence 222 133345567776654
No 289
>TIGR03143 AhpF_homolog putative alkyl hydroperoxide reductase F subunit. This family of thioredoxin reductase homologs is found adjacent to alkylhydroperoxide reductase C subunit predominantly in cases where there is only one C subunit in the genome and that genome is lacking the F subunit partner (also a thioredcxin reductase homolog) that is usually found (TIGR03140).
Probab=34.46 E-value=59 Score=31.56 Aligned_cols=60 Identities=10% Similarity=0.162 Sum_probs=38.0
Q ss_pred CeEEEEEEcCCCChhHHHHHHHHHHhHHHHHhCCCEEEEEcCCCHHHHHHHHHHcCCC-Cc-eeecC
Q 027527 97 RKAVVAFARHFGCVLCRKRADYLAAKKDVMDASGVALVLIGPGSVEQARTFSEQTKFK-GE-VYADP 161 (222)
Q Consensus 97 ~~vvVvF~R~~~Cp~C~~el~~L~~~~~~l~~~gv~lvaIs~~s~~~i~~f~~~~~~p-fp-il~Dp 161 (222)
+++-|-.|-..+||.|.+-+..++++..+.. ++..-.|-..+.. +.++++++- -| ++.|.
T Consensus 476 ~~~~i~v~~~~~C~~Cp~~~~~~~~~~~~~~--~i~~~~i~~~~~~---~~~~~~~v~~vP~~~i~~ 537 (555)
T TIGR03143 476 KPVNIKIGVSLSCTLCPDVVLAAQRIASLNP--NVEAEMIDVSHFP---DLKDEYGIMSVPAIVVDD 537 (555)
T ss_pred CCeEEEEEECCCCCCcHHHHHHHHHHHHhCC--CceEEEEECcccH---HHHHhCCceecCEEEECC
Confidence 5777777789999999987777766655432 6776666655442 333344543 34 55553
No 290
>COG4607 CeuA ABC-type enterochelin transport system, periplasmic component [Inorganic ion transport and metabolism]
Probab=34.40 E-value=94 Score=28.53 Aligned_cols=61 Identities=26% Similarity=0.385 Sum_probs=42.3
Q ss_pred cCcCCCcEEecCCCCeEeCCCccCCCeEEEEEEcCCCChhHHHHHHHHHHhHHHHHhCCCEEEEEcCCC--HHHHHHHHH
Q 027527 72 KNLLDTVKVYDVNGNAIPISDLWKDRKAVVAFARHFGCVLCRKRADYLAAKKDVMDASGVALVLIGPGS--VEQARTFSE 149 (222)
Q Consensus 72 g~~apdf~L~D~~G~~v~Lsdl~~~~~vvVvF~R~~~Cp~C~~el~~L~~~~~~l~~~gv~lvaIs~~s--~~~i~~f~~ 149 (222)
-+.+..+++.|..|+. .+.. ..+++||+-+ ...+.+++.|++.++++++. |..+++|..
T Consensus 37 ~a~a~t~Ti~~a~g~~-~vpk--nPekVvv~D~----------------gaLD~ld~lGve~~~v~~~~~~P~yL~~y~~ 97 (320)
T COG4607 37 SAAAATVTVKHALGET-VVPK--NPEKVVVLDL----------------GALDTLDALGVEVVAVGPGKNLPAYLQKYKD 97 (320)
T ss_pred hccCceEEeeccCCcc-cccC--CCceEEEecc----------------hhhhhHHHhCCccccccCCCCccHHHHHhcc
Confidence 4556789999988854 2332 2456777665 23567889999998886553 478888888
Q ss_pred Hc
Q 027527 150 QT 151 (222)
Q Consensus 150 ~~ 151 (222)
+.
T Consensus 98 dk 99 (320)
T COG4607 98 DK 99 (320)
T ss_pred CC
Confidence 53
No 291
>PRK10200 putative racemase; Provisional
Probab=34.30 E-value=77 Score=27.24 Aligned_cols=40 Identities=13% Similarity=0.226 Sum_probs=30.7
Q ss_pred HHHHHHHhHHHHHhCCCEEEEEcCCCHHH-HHHHHHHcCCC
Q 027527 115 RADYLAAKKDVMDASGVALVLIGPGSVEQ-ARTFSEQTKFK 154 (222)
Q Consensus 115 el~~L~~~~~~l~~~gv~lvaIs~~s~~~-i~~f~~~~~~p 154 (222)
-.+.|.+..+.|++.|+++++|.+.+... ..+..+..++|
T Consensus 60 ~~~~l~~~~~~L~~~g~~~iviaCNTah~~~~~l~~~~~iP 100 (230)
T PRK10200 60 TGDILAEAALGLQRAGAEGIVLCTNTMHKVADAIESRCSLP 100 (230)
T ss_pred HHHHHHHHHHHHHHcCCCEEEECCchHHHHHHHHHHhCCCC
Confidence 35788888889999999999999998853 44555555554
No 292
>PF14968 CCDC84: Coiled coil protein 84
Probab=34.18 E-value=9.1 Score=35.36 Aligned_cols=15 Identities=27% Similarity=0.552 Sum_probs=12.6
Q ss_pred cCCCChhHHHHHHHH
Q 027527 105 RHFGCVLCRKRADYL 119 (222)
Q Consensus 105 R~~~Cp~C~~el~~L 119 (222)
..+||++|-.++.+.
T Consensus 57 ~~fWC~fC~~ev~~~ 71 (336)
T PF14968_consen 57 NRFWCVFCDCEVREH 71 (336)
T ss_pred ceeEeeCccchhhhc
Confidence 468999999988866
No 293
>COG4615 PvdE ABC-type siderophore export system, fused ATPase and permease components [Secondary metabolites biosynthesis, transport, and catabolism / Inorganic ion transport and metabolism]
Probab=33.99 E-value=1.1e+02 Score=29.52 Aligned_cols=53 Identities=11% Similarity=0.063 Sum_probs=38.6
Q ss_pred cCCCeEEEEEEcCC-CChhHHHHHHHHHHhHHHHHhCCCEEEEEcCCCH--HHHHHHH
Q 027527 94 WKDRKAVVAFARHF-GCVLCRKRADYLAAKKDVMDASGVALVLIGPGSV--EQARTFS 148 (222)
Q Consensus 94 ~~~~~vvVvF~R~~-~Cp~C~~el~~L~~~~~~l~~~gv~lvaIs~~s~--~~i~~f~ 148 (222)
+++++++|.-=|+. -.|.-|++. +..+.+.+++.|-.|++|++|++ +.+..+.
T Consensus 464 lEeR~Ilv~DEWAADQDPaFRR~F--Y~~lLp~LK~qGKTI~aIsHDd~YF~~ADrll 519 (546)
T COG4615 464 LEERDILVLDEWAADQDPAFRREF--YQVLLPLLKEQGKTIFAISHDDHYFIHADRLL 519 (546)
T ss_pred HhhCCeEEeehhhccCChHHHHHH--HHHHhHHHHHhCCeEEEEecCchhhhhHHHHH
Confidence 35688877777764 567666643 45677888999999999999988 4444443
No 294
>PRK04175 rpl7ae 50S ribosomal protein L7Ae; Validated
Probab=33.87 E-value=1.6e+02 Score=23.00 Aligned_cols=50 Identities=16% Similarity=0.163 Sum_probs=37.3
Q ss_pred HHHHHhCCCEEEEEcCCC-H----HHHHHHHHHcCCCCceeecCChHHHHHcCCcc
Q 027527 123 KDVMDASGVALVLIGPGS-V----EQARTFSEQTKFKGEVYADPNHSSYEALSFVS 173 (222)
Q Consensus 123 ~~~l~~~gv~lvaIs~~s-~----~~i~~f~~~~~~pfpil~Dpd~~lyk~lGl~~ 173 (222)
...++...+.+|.|..|- + +.+..+|+++++|+ ++.....++.+++|...
T Consensus 39 ~kaikkgkakLVilA~D~s~~~i~~~~~~lc~~~~Vp~-~~~~tk~eLG~a~Gk~~ 93 (122)
T PRK04175 39 TKAVERGIAKLVVIAEDVDPEEIVAHLPLLCEEKKIPY-VYVPSKKDLGKAAGLEV 93 (122)
T ss_pred HHHHHcCCccEEEEeCCCChHHHHHHHHHHHHHcCCCE-EEECCHHHHHHHhCCCC
Confidence 344555567888887774 3 35566789999997 77778899999999974
No 295
>TIGR01490 HAD-SF-IB-hyp1 HAD-superfamily subfamily IB hydrolase, TIGR01490. A subset of these sequences, including the Caulobacter crescentus CicA protein, cluster together and may represent a separate equivalog.
Probab=33.83 E-value=1.2e+02 Score=24.58 Aligned_cols=33 Identities=12% Similarity=0.118 Sum_probs=26.8
Q ss_pred hHHHHHhCCCEEEEEcCCCHHHHHHHHHHcCCC
Q 027527 122 KKDVMDASGVALVLIGPGSVEQARTFSEQTKFK 154 (222)
Q Consensus 122 ~~~~l~~~gv~lvaIs~~s~~~i~~f~~~~~~p 154 (222)
..+.+++.|..++.|+.+....++.+++..+++
T Consensus 95 ~l~~l~~~g~~v~ivS~s~~~~v~~~~~~lg~~ 127 (202)
T TIGR01490 95 LIRWHKAEGHTIVLVSASLTILVKPLARILGID 127 (202)
T ss_pred HHHHHHHCCCEEEEEeCCcHHHHHHHHHHcCCc
Confidence 344556889999999988878889999988886
No 296
>TIGR01689 EcbF-BcbF capsule biosynthesis phosphatase. Due to the likelihood that the substrates of these enzymes are different depending on the nature of the particular polysaccharides associated with each species, this model has been classified as a subfamily despite the close homology.
Probab=33.80 E-value=1.4e+02 Score=23.41 Aligned_cols=43 Identities=16% Similarity=0.207 Sum_probs=29.6
Q ss_pred HHHHhHHHHHhCCCEEEEEcCCCH---H------------HHHHHHHHcCCCCc-eeec
Q 027527 118 YLAAKKDVMDASGVALVLIGPGSV---E------------QARTFSEQTKFKGE-VYAD 160 (222)
Q Consensus 118 ~L~~~~~~l~~~gv~lvaIs~~s~---~------------~i~~f~~~~~~pfp-il~D 160 (222)
...+...++.+.|..|+.++.=+. + .+.+|.+++++||. |+.-
T Consensus 28 ~~ie~L~~l~~~G~~IiiaTGR~~~~~~~n~~~i~~~~~~~t~~wL~k~~ipYd~l~~~ 86 (126)
T TIGR01689 28 AVIEKLRHYKALGFEIVISSSRNMRTYEGNVGKINIHTLPIIILWLNQHNVPYDEIYVG 86 (126)
T ss_pred HHHHHHHHHHHCCCEEEEECCCCchhhhccccccchhhHHHHHHHHHHcCCCCceEEeC
Confidence 344445556678998888865332 2 67899999999985 6653
No 297
>PF04134 DUF393: Protein of unknown function, DUF393; InterPro: IPR007263 The DCC family, named after the conserved N-terminal DxxCxxC motif, encompasses COG3011 from COG. Proteins in this family are predicted to have a thioredoxin-like fold which, together with the presence of an invariant catalytic cysteine residue, suggests that they are a novel group of thiol-disulphide oxidoreductases []. As some of the bacterial proteins are encoded near penicillin-binding proteins, it has been suggested that these may be involved in redox regulation of cell wall biosynthesis [].
Probab=33.37 E-value=36 Score=25.35 Aligned_cols=29 Identities=24% Similarity=0.502 Sum_probs=20.5
Q ss_pred cCCCChhHHHHHHHHHHhHHHHHhCCCEEEEE
Q 027527 105 RHFGCVLCRKRADYLAAKKDVMDASGVALVLI 136 (222)
Q Consensus 105 R~~~Cp~C~~el~~L~~~~~~l~~~gv~lvaI 136 (222)
-...||+|..++..+.+... ...++++.+
T Consensus 3 YDg~C~lC~~~~~~l~~~d~---~~~l~~~~~ 31 (114)
T PF04134_consen 3 YDGDCPLCRREVRFLRRRDR---GGRLRFVDI 31 (114)
T ss_pred ECCCCHhHHHHHHHHHhcCC---CCCEEEEEC
Confidence 35789999999999988721 234555555
No 298
>PF07905 PucR: Purine catabolism regulatory protein-like family; InterPro: IPR012914 This domain is found in the purine catabolism regulatory protein expressed by Bacillus subtilis (PucR, O32138 from SWISSPROT). PucR is thought to be a transcriptional regulator of genes involved in the purine degradation pathway, and may contain a LysR-like DNA-binding domain. It is similar to LysR-type regulators in that it represses its own expression []. The other members of this family are also putative regulatory proteins.
Probab=32.91 E-value=1.4e+02 Score=22.91 Aligned_cols=38 Identities=16% Similarity=0.072 Sum_probs=30.5
Q ss_pred HHHHhHHHHHhCCCEEEEEcCC-----CHHHHHHHHHHcCCCC
Q 027527 118 YLAAKKDVMDASGVALVLIGPG-----SVEQARTFSEQTKFKG 155 (222)
Q Consensus 118 ~L~~~~~~l~~~gv~lvaIs~~-----s~~~i~~f~~~~~~pf 155 (222)
.+.++..++.+.|+.=++|..+ =|+.+.++++++++|.
T Consensus 60 ~~~~~i~~L~~~~~agL~i~~~~~~~~iP~~~i~~A~~~~lPl 102 (123)
T PF07905_consen 60 ELREFIRELAEKGAAGLGIKTGRYLDEIPEEIIELADELGLPL 102 (123)
T ss_pred HHHHHHHHHHHCCCeEEEEeccCccccCCHHHHHHHHHcCCCE
Confidence 5677788888899988888776 3489999999988873
No 299
>PF08235 LNS2: LNS2 (Lipin/Ned1/Smp2); InterPro: IPR013209 This domain is found in Saccharomyces cerevisiae (Baker's yeast) protein SMP2, proteins with an N-terminal lipin domain (IPR007651 from INTERPRO) and phosphatidylinositol transfer proteins []. SMP2 is involved in plasmid maintenance and respiration []. Lipin proteins are involved in adipose tissue development and insulin resistance [].
Probab=32.89 E-value=1.3e+02 Score=24.69 Aligned_cols=49 Identities=14% Similarity=0.247 Sum_probs=39.3
Q ss_pred HHHHHhHHHHHhCCCEEEEEcCCCH---HHHHHHHHHc-----CCC-CceeecCChHH
Q 027527 117 DYLAAKKDVMDASGVALVLIGPGSV---EQARTFSEQT-----KFK-GEVYADPNHSS 165 (222)
Q Consensus 117 ~~L~~~~~~l~~~gv~lvaIs~~s~---~~i~~f~~~~-----~~p-fpil~Dpd~~l 165 (222)
+...+++.++.++|.+++-++.=.. ...+.|.+.. ++| .|++.-|++-+
T Consensus 30 ~g~~~l~~~i~~~GY~ilYlTaRp~~qa~~Tr~~L~~~~q~~~~lP~Gpv~~sP~~l~ 87 (157)
T PF08235_consen 30 PGAAELYRKIADNGYKILYLTARPIGQANRTRSWLAQHQQQGHNLPDGPVLLSPDSLF 87 (157)
T ss_pred hcHHHHHHHHHHCCeEEEEECcCcHHHHHHHHHHHHHHHhCCccCCCCCEEECCcchh
Confidence 4566778889999999999987654 5778899988 888 68888887654
No 300
>PF03129 HGTP_anticodon: Anticodon binding domain; InterPro: IPR004154 tRNA synthetases, or tRNA ligases are involved in protein synthesis. This domain is found in histidyl, glycyl, threonyl and prolyl tRNA synthetases [] it is probably the anticodon binding domain [].; GO: 0004812 aminoacyl-tRNA ligase activity, 0005524 ATP binding; PDB: 1KOG_B 1EVL_D 1EVK_B 1QF6_A 1FYF_B 2I4O_A 2I4M_A 2I4N_A 2I4L_A 1HC7_D ....
Probab=32.88 E-value=1.3e+02 Score=21.29 Aligned_cols=49 Identities=8% Similarity=0.138 Sum_probs=34.9
Q ss_pred HHHHHHhHHHHHhCCCEEEEEc-CCCHHHHHHHHHHcCCCCceeecCChH
Q 027527 116 ADYLAAKKDVMDASGVALVLIG-PGSVEQARTFSEQTKFKGEVYADPNHS 164 (222)
Q Consensus 116 l~~L~~~~~~l~~~gv~lvaIs-~~s~~~i~~f~~~~~~pfpil~Dpd~~ 164 (222)
...-.++..+|.+.|+.+..-. ..+....-++++..++||-|+..++..
T Consensus 15 ~~~a~~l~~~L~~~gi~v~~d~~~~~~~k~~~~a~~~g~p~~iiiG~~e~ 64 (94)
T PF03129_consen 15 IEYAQELANKLRKAGIRVELDDSDKSLGKQIKYADKLGIPFIIIIGEKEL 64 (94)
T ss_dssp HHHHHHHHHHHHHTTSEEEEESSSSTHHHHHHHHHHTTESEEEEEEHHHH
T ss_pred HHHHHHHHHHHHHCCCEEEEECCCCchhHHHHHHhhcCCeEEEEECchhH
Confidence 3444556788999998766664 445566667778889999988875543
No 301
>PF02677 DUF208: Uncharacterized BCR, COG1636; InterPro: IPR003828 This entry describes proteins of unknown function.
Probab=32.81 E-value=2.4e+02 Score=23.65 Aligned_cols=118 Identities=12% Similarity=0.085 Sum_probs=58.0
Q ss_pred eEEEEEEcCCCChhHHHHHHHHHHhHHHHHhCCCEEEEEcCCCHHHHHHHHHHcCC--------C--CceeecCChHHHH
Q 027527 98 KAVVAFARHFGCVLCRKRADYLAAKKDVMDASGVALVLIGPGSVEQARTFSEQTKF--------K--GEVYADPNHSSYE 167 (222)
Q Consensus 98 ~vvVvF~R~~~Cp~C~~el~~L~~~~~~l~~~gv~lvaIs~~s~~~i~~f~~~~~~--------p--fpil~Dpd~~lyk 167 (222)
--+.+||-..-=-+-.||...+.++..-.+..|+.+|.-. =+++.-.+.++...- . |.+=.+......+
T Consensus 23 ~~vt~~fyNPNIhP~~Ey~~R~~~~~~~~~~~~i~~i~~~-Y~~~~w~~~v~~~e~epE~g~RC~~Cy~~RL~~tA~~A~ 101 (176)
T PF02677_consen 23 FDVTGYFYNPNIHPYEEYERRLEELKRFAEKLGIPLIEGD-YDPEEWLRAVKGLEDEPEGGKRCRVCYDLRLEKTAQYAK 101 (176)
T ss_pred CCeEEEEeCCCCCcHHHHHHHHHHHHHHHHHcCCCEEecC-CCHHHHHHHHhhCccCCccCchhHHHHHHHHHHHHHHHH
Confidence 3455555566666666666666666665566677766533 222211111111110 0 2233344455566
Q ss_pred HcCCccc-cceeeccchhHHHHHHHHHHHHhhhcccccc-CCccCCceeeC
Q 027527 168 ALSFVSG-VLVTFTPKAGLKIIQSYMEGYRQDWKLSFER-DTVSRGGWYDT 216 (222)
Q Consensus 168 ~lGl~~~-~~~~~~P~a~~~~l~~~~~g~r~~~k~~~~g-~~~~g~~~Q~G 216 (222)
..|...- ....++|.--+..+..+-..+.+.....|-. |=.++||||-|
T Consensus 102 e~gfd~FtTTL~~Sp~k~~~~I~~iG~~~~~~~gv~f~~~DfRk~~g~~~~ 152 (176)
T PF02677_consen 102 ELGFDYFTTTLLISPYKNHELINEIGERLAKEYGVEFLYRDFRKKNGFQRS 152 (176)
T ss_pred HcCCCEEEccccCcCccCHHHHHHHHHHHHHhhCCeEEeeccccCccHHHH
Confidence 6666532 2223467655666666655554444433333 33455676654
No 302
>COG5418 Predicted secreted protein [Function unknown]
Probab=32.19 E-value=69 Score=26.38 Aligned_cols=61 Identities=15% Similarity=0.130 Sum_probs=42.3
Q ss_pred ccccCcCCCcEEecCCCCeEeCCCccCCCeEEEEEEcCCCChhHHHHHHHHHHhHHHHHhCCCEEEEEcCC
Q 027527 69 EDTKNLLDTVKVYDVNGNAIPISDLWKDRKAVVAFARHFGCVLCRKRADYLAAKKDVMDASGVALVLIGPG 139 (222)
Q Consensus 69 ~~~g~~apdf~L~D~~G~~v~Lsdl~~~~~vvVvF~R~~~Cp~C~~el~~L~~~~~~l~~~gv~lvaIs~~ 139 (222)
.-..-+-|+|.+...+-...+=..+ +++ ..=-+|++-+.-+.+..++.+..|++++.||..
T Consensus 46 ~IiqlPCPE~~yLg~~R~~~tke~~--d~~--------~yRr~c~ki~~pi~~~l~e~k~d~~kii~IGV~ 106 (164)
T COG5418 46 NIIQLPCPEFEYLGWPRPPMTKEVF--DHP--------GYRRVCRKIADPIGRVLEEEKPDGIKIIFIGVK 106 (164)
T ss_pred ceEeccCchHHhhCCCCCCcCHHHh--cch--------hHHHHHHHHHHHHHHHHHHhCcCCceEEEEecC
Confidence 3444556777777665555444433 221 122379999999999999999999999999765
No 303
>cd00738 HGTP_anticodon HGTP anticodon binding domain, as found at the C-terminus of histidyl, glycyl, threonyl and prolyl tRNA synthetases, which are classified as a group of class II aminoacyl-tRNA synthetases (aaRS). In aaRSs, the anticodon binding domain is responsible for specificity in tRNA-binding, so that the activated amino acid is transferred to a ribose 3' OH group of the appropriate tRNA only. This domain is also found in the accessory subunit of mitochondrial polymerase gamma (Pol gamma b).
Probab=31.91 E-value=1.3e+02 Score=20.91 Aligned_cols=47 Identities=9% Similarity=0.080 Sum_probs=33.0
Q ss_pred HHHHHHhHHHHHhCCCEEEEEcC-CCHHHHHHHHHHcCCCCceeecCC
Q 027527 116 ADYLAAKKDVMDASGVALVLIGP-GSVEQARTFSEQTKFKGEVYADPN 162 (222)
Q Consensus 116 l~~L~~~~~~l~~~gv~lvaIs~-~s~~~i~~f~~~~~~pfpil~Dpd 162 (222)
.....+...++++.|+.+..-.. .+....-++++..+++|-++.+++
T Consensus 17 ~~~a~~~~~~Lr~~g~~v~~~~~~~~~~k~~~~a~~~g~~~~iiig~~ 64 (94)
T cd00738 17 REYAQKLLNALLANGIRVLYDDRERKIGKKFREADLRGVPFAVVVGED 64 (94)
T ss_pred HHHHHHHHHHHHHCCCEEEecCCCcCHhHHHHHHHhCCCCEEEEECCC
Confidence 34444556778888988776443 455666677888899998888754
No 304
>cd00859 HisRS_anticodon HisRS Histidyl-anticodon binding domain. HisRS belongs to class II aminoacyl-tRNA synthetases (aaRS). This alignment contains the anticodon binding domain, which is responsible for specificity in tRNA-binding, so that the activated amino acid is transferred to a ribose 3' OH group of the appropriate tRNA only.
Probab=31.78 E-value=1.6e+02 Score=19.80 Aligned_cols=46 Identities=7% Similarity=0.081 Sum_probs=33.1
Q ss_pred HHHHHHhHHHHHhCCCEEEEEcCC-CHHHHHHHHHHcCCCCceeecC
Q 027527 116 ADYLAAKKDVMDASGVALVLIGPG-SVEQARTFSEQTKFKGEVYADP 161 (222)
Q Consensus 116 l~~L~~~~~~l~~~gv~lvaIs~~-s~~~i~~f~~~~~~pfpil~Dp 161 (222)
.....++..+|...|+.+.....+ +....-.+++..++++-++.+.
T Consensus 14 ~~~a~~i~~~Lr~~g~~v~~~~~~~~~~~~~~~a~~~~~~~~i~i~~ 60 (91)
T cd00859 14 LSEALELAEQLRDAGIKAEIDYGGRKLKKQFKYADRSGARFAVILGE 60 (91)
T ss_pred HHHHHHHHHHHHHCCCEEEEecCCCCHHHHHHHHHHcCCCEEEEEcH
Confidence 344555677788889887664443 5677777888899998887775
No 305
>PF01408 GFO_IDH_MocA: Oxidoreductase family, NAD-binding Rossmann fold; InterPro: IPR000683 This group of enzymes utilise NADP or NAD, and is known as the GFO/IDH/MOCA family in UniProtKB/Swiss-Prot. GFO is a glucose--fructose oxidoreductase, which converts D-glucose and D-fructose into D-gluconolactone and D-glucitol in the sorbitol-gluconate pathway. MOCA is a rhizopine catabolism protein which may catalyse the NADH-dependent dehydrogenase reaction involved in rhizopine catabolism. Other proteins belonging to this family include Gal80, a negative regulator for the expression of lactose and galactose metabolic genes; and several hypothetical proteins from yeast, Escherichia coli and Bacillus subtilis. The oxidoreductase, N-terminal domain is almost always associated with the oxidoreductase, C-terminal domain (see IPR004104 from INTERPRO).; GO: 0016491 oxidoreductase activity; PDB: 1LC0_A 1LC3_A 1GCU_A 3IP3_E 3CEA_C 3EVN_A 3NTQ_A 3NTR_B 3NT5_A 3MZ0_A ....
Probab=31.58 E-value=74 Score=23.39 Aligned_cols=32 Identities=25% Similarity=0.379 Sum_probs=26.6
Q ss_pred CCCEEEEEcCCCHHHHHHHHHHcCCCCceeecCC
Q 027527 129 SGVALVLIGPGSVEQARTFSEQTKFKGEVYADPN 162 (222)
Q Consensus 129 ~gv~lvaIs~~s~~~i~~f~~~~~~pfpil~Dpd 162 (222)
.++++++|.-.+++..+++.++++++ .|.|.+
T Consensus 24 ~~~~v~~v~d~~~~~~~~~~~~~~~~--~~~~~~ 55 (120)
T PF01408_consen 24 PDFEVVAVCDPDPERAEAFAEKYGIP--VYTDLE 55 (120)
T ss_dssp TTEEEEEEECSSHHHHHHHHHHTTSE--EESSHH
T ss_pred CCcEEEEEEeCCHHHHHHHHHHhccc--chhHHH
Confidence 45799999999999999999988887 777644
No 306
>PF01297 TroA: Periplasmic solute binding protein family; InterPro: IPR006127 This is a family of ABC transporter metal-binding lipoproteins. An example is the periplasmic zinc-binding protein TroA P96116 from SWISSPROT that interacts with an ATP-binding cassette transport system in Treponema pallidum and plays a role in the transport of zinc across the cytoplasmic membrane. Related proteins are found in both Gram-positive and Gram-negative bacteria. ; GO: 0046872 metal ion binding, 0030001 metal ion transport; PDB: 2PS9_A 2PS0_A 2OSV_A 2OGW_A 2PS3_A 2PRS_B 3MFQ_C 3GI1_B 2OV3_A 1PQ4_A ....
Probab=30.73 E-value=80 Score=27.07 Aligned_cols=46 Identities=24% Similarity=0.313 Sum_probs=24.6
Q ss_pred HHHHHHhHHHHHhCCCEEEEEcCCCH-HHHHHHHHHcCCCCceeecCC
Q 027527 116 ADYLAAKKDVMDASGVALVLIGPGSV-EQARTFSEQTKFKGEVYADPN 162 (222)
Q Consensus 116 l~~L~~~~~~l~~~gv~lvaIs~~s~-~~i~~f~~~~~~pfpil~Dpd 162 (222)
..+|+++.+.+++.++++|....... ..++..+++++.+. ++.|+-
T Consensus 185 ~~~l~~l~~~ik~~~v~~i~~e~~~~~~~~~~la~~~g~~v-v~ld~l 231 (256)
T PF01297_consen 185 PKDLAELIKLIKENKVKCIFTEPQFSSKLAEALAKETGVKV-VYLDPL 231 (256)
T ss_dssp HHHHHHHHHHHHHTT-SEEEEETTS-THHHHHHHHCCT-EE-EESSTT
T ss_pred HHHHHHHHHHhhhcCCcEEEecCCCChHHHHHHHHHcCCcE-EEeCCC
Confidence 34555566666677777666655544 34555556666555 444443
No 307
>TIGR01261 hisB_Nterm histidinol-phosphatase. This model describes histidinol phosphatase. All known examples in the scope of this model are bifunctional proteins with a histidinol phosphatase domain followed by an imidazoleglycerol-phosphate dehydratase domain. These enzymatic domains catalyze the ninth and seventh steps, respectively, of histidine biosynthesis.
Probab=30.55 E-value=1.4e+02 Score=24.10 Aligned_cols=69 Identities=12% Similarity=0.085 Sum_probs=43.7
Q ss_pred cEEecCCCCeEeCCC--ccCCCeEEEEEEcCCCChhHHHHHHHHHHhHHHHHhCCCEEEEEcCCC---------------
Q 027527 78 VKVYDVNGNAIPISD--LWKDRKAVVAFARHFGCVLCRKRADYLAAKKDVMDASGVALVLIGPGS--------------- 140 (222)
Q Consensus 78 f~L~D~~G~~v~Lsd--l~~~~~vvVvF~R~~~Cp~C~~el~~L~~~~~~l~~~gv~lvaIs~~s--------------- 140 (222)
+.++|.||..+.... ++.+.+.-+.. .+.+.+...+|.++|..+++++..+
T Consensus 3 ~~~~d~dg~l~~~~~~~~~~~~~~~~~~------------~pgv~e~L~~L~~~g~~l~IvSN~~g~~~~~~~~~~~~~~ 70 (161)
T TIGR01261 3 ILFIDRDGTLIEEPPSDFQVDALEKLRF------------EKGVIPALLKLKKAGYKFVMVTNQDGLGTPSFPQADFDGP 70 (161)
T ss_pred EEEEeCCCCccccCCCccccCCHHHeeE------------CCCHHHHHHHHHHCCCeEEEEeCCccccCCcCCHHHHHHH
Confidence 457788888766322 22222111111 2456677778889999999998753
Q ss_pred HHHHHHHHHHcCCCCc-ee
Q 027527 141 VEQARTFSEQTKFKGE-VY 158 (222)
Q Consensus 141 ~~~i~~f~~~~~~pfp-il 158 (222)
...+.+.++..++.|. ++
T Consensus 71 ~~~~~~~l~~~gl~fd~ii 89 (161)
T TIGR01261 71 HNLMLQIFRSQGIIFDDVL 89 (161)
T ss_pred HHHHHHHHHHCCCceeEEE
Confidence 3466778888899874 54
No 308
>PF01248 Ribosomal_L7Ae: Ribosomal protein L7Ae/L30e/S12e/Gadd45 family; InterPro: IPR004038 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This family includes: Ribosomal L7A from metazoa, Ribosomal L8-A and L8-B from fungi, 30S ribosomal protein HS6 from archaebacteria, 40S ribosomal protein S12 from eukaryotes, ribosomal protein L30 from eukaryotes and archaebacteria, Gadd45 and MyD118 [].; PDB: 2CZW_A 3V7E_B 2QEX_F 1YJ9_F 1VQ8_F 1YJN_F 3I56_F 1VQ6_F 2OTJ_F 1YIJ_F ....
Probab=30.40 E-value=67 Score=23.21 Aligned_cols=53 Identities=9% Similarity=0.098 Sum_probs=37.3
Q ss_pred HhHHHHHhCCCEEEEEcCCCH----HH-HHHHHHHcCCCCceeecCChHHHHHcCCccc
Q 027527 121 AKKDVMDASGVALVLIGPGSV----EQ-ARTFSEQTKFKGEVYADPNHSSYEALSFVSG 174 (222)
Q Consensus 121 ~~~~~l~~~gv~lvaIs~~s~----~~-i~~f~~~~~~pfpil~Dpd~~lyk~lGl~~~ 174 (222)
+....++...+.++.+..|-. .. +..+++++++|+ ++.....++.+.+|....
T Consensus 22 ~v~k~l~~~~~~lvilA~d~~~~~~~~~l~~~c~~~~Ip~-~~~~s~~eLG~~~g~~~~ 79 (95)
T PF01248_consen 22 EVLKALKKGKAKLVILAEDCSPDSIKKHLPALCEEKNIPY-VFVPSKEELGRACGKKRP 79 (95)
T ss_dssp HHHHHHHTTCESEEEEETTSSSGHHHHHHHHHHHHTTEEE-EEESHHHHHHHHTTSSST
T ss_pred HHHHHHHcCCCcEEEEcCCCChhhhcccchhheeccceeE-EEECCHHHHHHHHCCCCc
Confidence 344555566677777777622 34 667999999988 555556999999999864
No 309
>TIGR02766 crypt_chrom_pln cryptochrome, plant family. At least five major families of cryptochomes and photolyases share FAD cofactor binding, sequence homology, and the ability to react to short wavelengths of visible light. Photolysases are responsible for light-dependent DNA repair by removal of two types of uv-induced DNA dimerizations. Cryptochromes have other functions, often regulatory and often largely unknown, which may include circadian clock entrainment and control of development. Members of this subfamily are known so far only in plants; they may show some photolyase activity in vitro but appear mostly to be regulatory proteins that respond to blue light.
Probab=30.32 E-value=1.6e+02 Score=28.03 Aligned_cols=39 Identities=18% Similarity=0.125 Sum_probs=31.7
Q ss_pred HHHHHHhHHHHHhCCCEEEEEcCCCH-HHHHHHHHHcCCC
Q 027527 116 ADYLAAKKDVMDASGVALVLIGPGSV-EQARTFSEQTKFK 154 (222)
Q Consensus 116 l~~L~~~~~~l~~~gv~lvaIs~~s~-~~i~~f~~~~~~p 154 (222)
...|.++.++|++.|..++++-.|++ +.+.+.++++++.
T Consensus 50 ~~sL~~L~~~L~~~G~~L~v~~~g~~~~~l~~l~~~~~i~ 89 (475)
T TIGR02766 50 KQSLAHLDQSLRSLGTCLVTIRSTDTVAALLDCVRSTGAT 89 (475)
T ss_pred HHHHHHHHHHHHHcCCceEEEeCCCHHHHHHHHHHHcCCC
Confidence 45888899999999999998855554 6778899888765
No 310
>cd05013 SIS_RpiR RpiR-like protein. RpiR contains a SIS (Sugar ISomerase) domain, which is found in many phosphosugar isomerases and phosphosugar binding proteins. In E. coli, rpiR negatively regulates the expression of rpiB gene. Both rpiB and rpiA are ribose phosphate isomerases that catalyze the reversible reactions of ribose 5-phosphate into ribulose 5-phosphate.
Probab=30.27 E-value=1.1e+02 Score=22.66 Aligned_cols=44 Identities=11% Similarity=0.116 Sum_probs=29.2
Q ss_pred eEEEEEEcCCCChhHHHHHHHHHHhHHHHHhCCCEEEEEcCCCHHHHHHH
Q 027527 98 KAVVAFARHFGCVLCRKRADYLAAKKDVMDASGVALVLIGPGSVEQARTF 147 (222)
Q Consensus 98 ~vvVvF~R~~~Cp~C~~el~~L~~~~~~l~~~gv~lvaIs~~s~~~i~~f 147 (222)
..+++++-..+.. .++.+..+..+++|+++|+|.......+.++
T Consensus 61 ~~~~i~iS~~g~~------~~~~~~~~~a~~~g~~iv~iT~~~~~~l~~~ 104 (139)
T cd05013 61 GDVVIAISFSGET------KETVEAAEIAKERGAKVIAITDSANSPLAKL 104 (139)
T ss_pred CCEEEEEeCCCCC------HHHHHHHHHHHHcCCeEEEEcCCCCChhHHh
Confidence 3466666666664 3455555667788999999988765555544
No 311
>PF00448 SRP54: SRP54-type protein, GTPase domain; InterPro: IPR000897 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]. SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. This entry represents the GTPase domain of the 54 kDa SRP54 component, a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 of the signal recognition particle has a three-domain structure: an N-terminal helical bundle domain, a GTPase domain, and the M-domain that binds the 7s RNA and also binds the signal sequence. The extreme C-terminal region is glycine-rich and lower in complexity and poorly conserved between species. The GTPase domain is evolutionary related to P-loop NTPase domains found in a variety of other proteins []. These proteins include Escherichia coli and Bacillus subtilis ffh protein (P48), which seems to be the prokaryotic counterpart of SRP54; signal recognition particle receptor alpha subunit (docking protein), an integral membrane GTP-binding protein which ensures, in conjunction with SRP, the correct targeting of nascent secretory proteins to the endoplasmic reticulum membrane; bacterial FtsY protein, which is believed to play a similar role to that of the docking protein in eukaryotes; the pilA protein from Neisseria gonorrhoeae, the homologue of ftsY; and bacterial flagellar biosynthesis protein flhF.; GO: 0005525 GTP binding, 0006614 SRP-dependent cotranslational protein targeting to membrane; PDB: 2OG2_A 3B9Q_A 3DM9_B 3DMD_B 3E70_C 3DM5_B 2XXA_C 2J28_9 1ZU5_B 1ZU4_A ....
Probab=30.16 E-value=1.1e+02 Score=25.70 Aligned_cols=56 Identities=21% Similarity=0.210 Sum_probs=37.1
Q ss_pred eEEEEEEcCCCChhHHHHHHHHHHhHHHHHhCCCEEEEEcCCCH-----HHHHHHHHHcCCCCce
Q 027527 98 KAVVAFARHFGCVLCRKRADYLAAKKDVMDASGVALVLIGPGSV-----EQARTFSEQTKFKGEV 157 (222)
Q Consensus 98 ~vvVvF~R~~~Cp~C~~el~~L~~~~~~l~~~gv~lvaIs~~s~-----~~i~~f~~~~~~pfpi 157 (222)
|-+++|+--+|+.-..- ++++...+...|-+|..|+.|+. ++++.|++..++|+-.
T Consensus 1 p~vi~lvGptGvGKTTt----~aKLAa~~~~~~~~v~lis~D~~R~ga~eQL~~~a~~l~vp~~~ 61 (196)
T PF00448_consen 1 PKVIALVGPTGVGKTTT----IAKLAARLKLKGKKVALISADTYRIGAVEQLKTYAEILGVPFYV 61 (196)
T ss_dssp SEEEEEEESTTSSHHHH----HHHHHHHHHHTT--EEEEEESTSSTHHHHHHHHHHHHHTEEEEE
T ss_pred CEEEEEECCCCCchHhH----HHHHHHHHhhccccceeecCCCCCccHHHHHHHHHHHhccccch
Confidence 34677777777776653 44444444444777888888753 7899999999998643
No 312
>COG2143 Thioredoxin-related protein [Posttranslational modification, protein turnover, chaperones]
Probab=30.12 E-value=2.2e+02 Score=23.85 Aligned_cols=25 Identities=20% Similarity=0.416 Sum_probs=18.3
Q ss_pred CCeEEEEEEcCCCChhHHHHHHHHH
Q 027527 96 DRKAVVAFARHFGCVLCRKRADYLA 120 (222)
Q Consensus 96 ~~~vvVvF~R~~~Cp~C~~el~~L~ 120 (222)
.++-+++-|-..+|++|.+.=.++.
T Consensus 41 ~~Kylllmfes~~C~yC~~~KKd~~ 65 (182)
T COG2143 41 NDKYLLLMFESNGCSYCERFKKDLK 65 (182)
T ss_pred cCcEEEEEEcCCCChHHHHHHHhhc
Confidence 3456777788999999987555443
No 313
>cd00861 ProRS_anticodon_short ProRS Prolyl-anticodon binding domain, short version found predominantly in bacteria. ProRS belongs to class II aminoacyl-tRNA synthetases (aaRS). This alignment contains the anticodon binding domain, which is responsible for specificity in tRNA-binding, so that the activated amino acid is transferred to a ribose 3' OH group of the appropriate tRNA only.
Probab=30.01 E-value=1.5e+02 Score=20.72 Aligned_cols=51 Identities=8% Similarity=0.017 Sum_probs=34.4
Q ss_pred HHHHHHHHhHHHHHhCCCEEEEEcC-CCHHHHHHHHHHcCCCCceeecCChH
Q 027527 114 KRADYLAAKKDVMDASGVALVLIGP-GSVEQARTFSEQTKFKGEVYADPNHS 164 (222)
Q Consensus 114 ~el~~L~~~~~~l~~~gv~lvaIs~-~s~~~i~~f~~~~~~pfpil~Dpd~~ 164 (222)
+......++..++++.|+.+..-.. .+....-+++++.++||-++..++..
T Consensus 15 ~~~~~a~~la~~Lr~~g~~v~~d~~~~~l~k~i~~a~~~g~~~~iiiG~~e~ 66 (94)
T cd00861 15 VQQELAEKLYAELQAAGVDVLLDDRNERPGVKFADADLIGIPYRIVVGKKSA 66 (94)
T ss_pred HHHHHHHHHHHHHHHCCCEEEEECCCCCcccchhHHHhcCCCEEEEECCchh
Confidence 3344455567778888988876433 34455566778889999988875544
No 314
>PF02514 CobN-Mg_chel: CobN/Magnesium Chelatase; InterPro: IPR003672 This family contains a domain common to the cobN protein and to magnesium protoporphyrin chelatase. CobN may play a role in cobalt insertion reactions and is implicated in the conversion of precorrin-2 to cobyrinic acid in cobalamin biosynthesis []. Magnesium protoporphyrin chelatase is involved in chlorophyll biosynthesis as the third subunit of light-independent protochlorophyllide reductase in bacteria and plants [].; GO: 0009058 biosynthetic process
Probab=29.95 E-value=1.6e+02 Score=31.61 Aligned_cols=74 Identities=12% Similarity=0.055 Sum_probs=50.1
Q ss_pred eEEEEEEcCCCChhHHHHHHHHHHhHHHHHhCCCEEEEEcCC----CHHHHHHHHHHcC-CC---------CceeecC--
Q 027527 98 KAVVAFARHFGCVLCRKRADYLAAKKDVMDASGVALVLIGPG----SVEQARTFSEQTK-FK---------GEVYADP-- 161 (222)
Q Consensus 98 ~vvVvF~R~~~Cp~C~~el~~L~~~~~~l~~~gv~lvaIs~~----s~~~i~~f~~~~~-~p---------fpil~Dp-- 161 (222)
.+.|+|+|..|...+..++.+| ..+|+++|+.+|.|.+. ..+.++.|....+ .. |.+...+
T Consensus 73 ~VgIlfyrs~~~~g~~~~vdaL---I~~LE~~G~nvipvf~~~~~~~~~~i~~~f~~~g~~~vDaIIn~~~f~l~~~~~~ 149 (1098)
T PF02514_consen 73 TVGILFYRSYWLSGNTAVVDAL---IRALEERGLNVIPVFCSSGPDSQEAIEDYFMDDGKPRVDAIINLTGFSLGGGPAG 149 (1098)
T ss_pred EEEEEeehhhhhcCCcHHHHHH---HHHHHHCCCeEEEEEecCccchHHHHHHHHhhcCCCCceEEEEcCccccCCCCcc
Confidence 5678888999988887766654 55677899999999854 3467777776622 11 2222222
Q ss_pred -ChHHHHHcCCccc
Q 027527 162 -NHSSYEALSFVSG 174 (222)
Q Consensus 162 -d~~lyk~lGl~~~ 174 (222)
...+++.+|+..-
T Consensus 150 ~~~~~L~~LnVPVl 163 (1098)
T PF02514_consen 150 GAIELLKELNVPVL 163 (1098)
T ss_pred hhHHHHHHCCCCEE
Confidence 4778888988543
No 315
>COG5561 Predicted metal-binding protein [Function unknown]
Probab=29.83 E-value=35 Score=25.79 Aligned_cols=30 Identities=10% Similarity=0.123 Sum_probs=25.4
Q ss_pred CCChhHHHHHHHHHHhHHHHHhCCCEEEEEc
Q 027527 107 FGCVLCRKRADYLAAKKDVMDASGVALVLIG 137 (222)
Q Consensus 107 ~~Cp~C~~el~~L~~~~~~l~~~gv~lvaIs 137 (222)
.+||.|..=+.+.++-..+|++- ++||++.
T Consensus 5 ~gCPG~v~CfKA~ne~~g~Fe~y-v~viaf~ 34 (101)
T COG5561 5 YGCPGEVRCFKAANEGEGKFEEY-VRVIAFI 34 (101)
T ss_pred cCCCchHHHHHHHhccccccccc-EEEEEEE
Confidence 68999999999999988888766 8888873
No 316
>PRK01158 phosphoglycolate phosphatase; Provisional
Probab=29.66 E-value=1.2e+02 Score=24.94 Aligned_cols=49 Identities=14% Similarity=0.087 Sum_probs=35.0
Q ss_pred HHHHhHHHHHhCCCEEEEEcCCCHHHHHHHHHHcCCCCceeecCChHHH
Q 027527 118 YLAAKKDVMDASGVALVLIGPGSVEQARTFSEQTKFKGEVYADPNHSSY 166 (222)
Q Consensus 118 ~L~~~~~~l~~~gv~lvaIs~~s~~~i~~f~~~~~~pfpil~Dpd~~ly 166 (222)
...+...++++.|+.++.++--+...++++.++.+++.++++.....+|
T Consensus 24 ~~~~al~~l~~~G~~~~iaTGR~~~~~~~~~~~l~~~~~~i~~nGa~i~ 72 (230)
T PRK01158 24 KAVEAIRKAEKLGIPVILATGNVLCFARAAAKLIGTSGPVIAENGGVIS 72 (230)
T ss_pred HHHHHHHHHHHCCCEEEEEcCCchHHHHHHHHHhCCCCcEEEecCeEEE
Confidence 4445556677899988877777778888888888888666665444444
No 317
>PRK10017 colanic acid biosynthesis protein; Provisional
Probab=29.61 E-value=3.4e+02 Score=25.69 Aligned_cols=42 Identities=12% Similarity=0.059 Sum_probs=31.6
Q ss_pred CCeEEEEEEcCCCCh-------hHHHHHHHHHHhHHHHHhCCCEEEEEcC
Q 027527 96 DRKAVVAFARHFGCV-------LCRKRADYLAAKKDVMDASGVALVLIGP 138 (222)
Q Consensus 96 ~~~vvVvF~R~~~Cp-------~C~~el~~L~~~~~~l~~~gv~lvaIs~ 138 (222)
+++.|-+.+| .|.+ ...+|...+++..+.+.+.|.+|+.+..
T Consensus 233 ~~~~Vgisvr-~~~~~~~~~~~~~~~Y~~~la~~i~~Li~~g~~Vv~lp~ 281 (426)
T PRK10017 233 QQKTVAITLR-ELAPFDKRLGTTQQAYEKAFAGVVNRIIDEGYQVIALST 281 (426)
T ss_pred cCCEEEEEec-ccccccccccccHHHHHHHHHHHHHHHHHCCCeEEEEec
Confidence 4566767776 4543 3677888999998888888999888874
No 318
>PHA00649 hypothetical protein
Probab=29.24 E-value=1.2e+02 Score=21.84 Aligned_cols=39 Identities=28% Similarity=0.397 Sum_probs=25.8
Q ss_pred CCCChhHHHHHHHHHHhHHHHHhCCCEEEEEcCCCHHHHHHHHHHc
Q 027527 106 HFGCVLCRKRADYLAAKKDVMDASGVALVLIGPGSVEQARTFSEQT 151 (222)
Q Consensus 106 ~~~Cp~C~~el~~L~~~~~~l~~~gv~lvaIs~~s~~~i~~f~~~~ 151 (222)
|...|-|+|-+..-. ...| .+++|..++|+++++|.++.
T Consensus 5 hcdtpacqEAA~rAV--~~~~-----~~LGVD~~~P~~VEEFr~D~ 43 (83)
T PHA00649 5 HCDTPACQEAADRAV--KKVF-----AILGVDVDVPEQVEEFREDL 43 (83)
T ss_pred cCCchHHHHHHHHHH--HHHH-----HHHcCCCCCHHHHHHHHHHH
Confidence 445688988665322 2223 24567788999999998874
No 319
>COG0560 SerB Phosphoserine phosphatase [Amino acid transport and metabolism]
Probab=28.90 E-value=99 Score=26.25 Aligned_cols=37 Identities=16% Similarity=0.181 Sum_probs=30.9
Q ss_pred HHHhHHHHHhCCCEEEEEcCCCHHHHHHHHHHcCCCC
Q 027527 119 LAAKKDVMDASGVALVLIGPGSVEQARTFSEQTKFKG 155 (222)
Q Consensus 119 L~~~~~~l~~~gv~lvaIs~~s~~~i~~f~~~~~~pf 155 (222)
..++...+++.|.+++.||-+-..-++.+++++++++
T Consensus 82 a~elv~~lk~~G~~v~iiSgg~~~lv~~ia~~lg~d~ 118 (212)
T COG0560 82 AEELVAALKAAGAKVVIISGGFTFLVEPIAERLGIDY 118 (212)
T ss_pred HHHHHHHHHHCCCEEEEEcCChHHHHHHHHHHhCCch
Confidence 3444566789999999999998889999999999885
No 320
>KOG4530 consensus Predicted flavoprotein [General function prediction only]
Probab=28.79 E-value=73 Score=26.75 Aligned_cols=34 Identities=12% Similarity=0.173 Sum_probs=28.5
Q ss_pred CCccCCCeEEEEEEcCCCChhHHHHHHHHHHhHH
Q 027527 91 SDLWKDRKAVVAFARHFGCVLCRKRADYLAAKKD 124 (222)
Q Consensus 91 sdl~~~~~vvVvF~R~~~Cp~C~~el~~L~~~~~ 124 (222)
..-|.++|++||-+-+.+-..|+.+++++.-..+
T Consensus 113 yheW~gKPalivSyGGhGGg~c~~qL~~v~~fLk 146 (199)
T KOG4530|consen 113 YHEWAGKPALIVSYGGHGGGRCQYQLRQVGVFLK 146 (199)
T ss_pred hhhhcCCceEEEEecCCCCchHHHHHHHHHhhhe
Confidence 3348899999999999999999999888776543
No 321
>TIGR01482 SPP-subfamily Sucrose-phosphate phosphatase subfamily. catalyze the same reaction as SPP.
Probab=28.62 E-value=1.2e+02 Score=24.86 Aligned_cols=42 Identities=21% Similarity=0.280 Sum_probs=30.8
Q ss_pred HhHHHHHhCCCEEEEEcCCCHHHHHHHHHHcCCCCceeecCC
Q 027527 121 AKKDVMDASGVALVLIGPGSVEQARTFSEQTKFKGEVYADPN 162 (222)
Q Consensus 121 ~~~~~l~~~gv~lvaIs~~s~~~i~~f~~~~~~pfpil~Dpd 162 (222)
+...++++.|+.++..+--+...+.++.++.+++.++++...
T Consensus 22 ~al~~l~~~Gi~~~~aTGR~~~~~~~~~~~l~~~~~~i~~nG 63 (225)
T TIGR01482 22 EAIRKAESVGIPVVLVTGNSVQFARALAKLIGTPDPVIAENG 63 (225)
T ss_pred HHHHHHHHCCCEEEEEcCCchHHHHHHHHHhCCCCeEEEecC
Confidence 344567789998887777777888889998887766655433
No 322
>cd03025 DsbA_FrnE_like DsbA family, FrnE-like subfamily; composed of uncharacterized proteins containing a CXXC motif with similarity to DsbA and FrnE. FrnE is presumed to be a thiol oxidoreductase involved in polyketide biosynthesis, specifically in the production of the aromatic antibiotics frenolicin and nanaomycins.
Probab=28.41 E-value=61 Score=26.02 Aligned_cols=33 Identities=15% Similarity=0.202 Sum_probs=25.1
Q ss_pred EEEEcCCCChhHHHHHHHHHHhHHHHHhCCCEEE
Q 027527 101 VAFARHFGCVLCRKRADYLAAKKDVMDASGVALV 134 (222)
Q Consensus 101 VvF~R~~~Cp~C~~el~~L~~~~~~l~~~gv~lv 134 (222)
|.||..+.||.|..-.+.|.++.+++. .+++|.
T Consensus 3 i~~~~D~~cp~c~~~~~~l~~l~~~~~-~~~~v~ 35 (193)
T cd03025 3 LYYFIDPLCGWCYGFEPLLEKLKEEYG-GGIEVE 35 (193)
T ss_pred EEEEECCCCchhhCchHHHHHHHHHhC-CCceEE
Confidence 567889999999998888888888772 344433
No 323
>cd03053 GST_N_Phi GST_N family, Class Phi subfamily; composed of plant-specific class Phi GSTs and related fungal and bacterial proteins. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. The class Phi GST subfamily has experience extensive gene duplication. The Arabidopsis and Oryza genomes contain 13 and 16 Phi GSTs, respectively. They are primarily responsible for herbicide detoxification together with class Tau GSTs, showing class specificity in substrate preference. Phi enzymes are highly reactive toward chloroacetanilide and thiocarbamate herbicides. Some Phi GSTs have other functions including t
Probab=28.36 E-value=1.1e+02 Score=20.48 Aligned_cols=57 Identities=14% Similarity=0.051 Sum_probs=31.8
Q ss_pred EEEEcCCCChhHHHHHHHHHHhHHHHHhCCCEEEEEcCCCHH-HHHHHHHHcCCC-CceeecCC
Q 027527 101 VAFARHFGCVLCRKRADYLAAKKDVMDASGVALVLIGPGSVE-QARTFSEQTKFK-GEVYADPN 162 (222)
Q Consensus 101 VvF~R~~~Cp~C~~el~~L~~~~~~l~~~gv~lvaIs~~s~~-~i~~f~~~~~~p-fpil~Dpd 162 (222)
+.+|....||.|++-.-.|.+.- ...+++.|.....+ .-..|.+..... .|++.|.+
T Consensus 2 ~~Ly~~~~s~~s~~v~~~l~~~~-----i~~~~~~~~~~~~~~~~~~~~~~~P~~~vP~l~~~g 60 (76)
T cd03053 2 LKLYGAAMSTCVRRVLLCLEEKG-----VDYELVPVDLTKGEHKSPEHLARNPFGQIPALEDGD 60 (76)
T ss_pred eEEEeCCCChhHHHHHHHHHHcC-----CCcEEEEeCccccccCCHHHHhhCCCCCCCEEEECC
Confidence 45777888999987665555432 22344545443221 223455554443 67777754
No 324
>PRK13738 conjugal transfer pilus assembly protein TraW; Provisional
Probab=28.33 E-value=2.2e+02 Score=24.47 Aligned_cols=62 Identities=8% Similarity=0.060 Sum_probs=42.3
Q ss_pred ChhHHHHHHHHHHhHHHHHhCCCEEEEEcCCCHHHHHHHHHHcCCCCceeecCChHHHHHcCCcccccee
Q 027527 109 CVLCRKRADYLAAKKDVMDASGVALVLIGPGSVEQARTFSEQTKFKGEVYADPNHSSYEALSFVSGVLVT 178 (222)
Q Consensus 109 Cp~C~~el~~L~~~~~~l~~~gv~lvaIs~~s~~~i~~f~~~~~~pfpil~Dpd~~lyk~lGl~~~~~~~ 178 (222)
.+.-.+++.+..+.++.- ..+++|.+.-+-.+..++ +.-++|.|.++.+-+.||++..+...
T Consensus 127 DgdD~~Qv~wak~~~~~~--~~~k~ILv~Gs~~~~~~~------l~~~vYfdQ~G~Lt~rF~I~~VPAvV 188 (209)
T PRK13738 127 NGDDPAQVAWMKRQTPPT--LESKIILVQGSIPEMSKA------LDSRIYFDQNGVLCQRFGIDQVPARV 188 (209)
T ss_pred eCCCHHHHHHHHHhhhcc--CCceEEEECCCHHHHHHH------hCCceEEcCcchHHHhcCCeeeceEE
Confidence 344567777777654432 257888777443344433 45679999999999999999887643
No 325
>TIGR02319 CPEP_Pphonmut carboxyvinyl-carboxyphosphonate phosphorylmutase. This family consists of carboxyvinyl-carboxyphosphonate phosphorylmutase (CPEP phosphonomutase), an unusual enzyme involved in the biosynthesis of the antibiotic bialaphos. So far, it is known only in that pathway and only in Streptomyces hygroscopicus. Some related proteins annotated as being functionally equivalent are likely misannotated examples of methylisocitrate lyase, an enzyme of priopionate utilization.
Probab=28.12 E-value=3.6e+02 Score=24.35 Aligned_cols=55 Identities=9% Similarity=0.168 Sum_probs=38.5
Q ss_pred hHHHHHhCCCEEEEE-cCCCHHHHHHHHHHcCCCC--ceeec-----CChHHHHHcCCccccc
Q 027527 122 KKDVMDASGVALVLI-GPGSVEQARTFSEQTKFKG--EVYAD-----PNHSSYEALSFVSGVL 176 (222)
Q Consensus 122 ~~~~l~~~gv~lvaI-s~~s~~~i~~f~~~~~~pf--pil~D-----pd~~lyk~lGl~~~~~ 176 (222)
....+.+.|...|.| +..+.+++++++++...|. .++.- .+.+-.+.+|+..-..
T Consensus 170 Ra~aY~eAGAD~ifi~~~~~~~ei~~~~~~~~~P~~~nv~~~~~~p~~s~~eL~~lG~~~v~~ 232 (294)
T TIGR02319 170 RSREYVAAGADCIFLEAMLDVEEMKRVRDEIDAPLLANMVEGGKTPWLTTKELESIGYNLAIY 232 (294)
T ss_pred HHHHHHHhCCCEEEecCCCCHHHHHHHHHhcCCCeeEEEEecCCCCCCCHHHHHHcCCcEEEE
Confidence 345567899998888 5568899999999876664 23331 2455677788877643
No 326
>smart00775 LNS2 LNS2 domain. This domain is found in Saccharomyces cerevisiae protein SMP2, proteins with an N-terminal lipin domain and phosphatidylinositol transfer proteins. SMP2 is involved in plasmid maintenance and respiration. Lipin proteins are involved in adipose tissue development and insulin resistance.
Probab=28.04 E-value=2.2e+02 Score=22.80 Aligned_cols=50 Identities=18% Similarity=0.270 Sum_probs=36.2
Q ss_pred HHHHHhHHHHHhCCCEEEEEcCCCHHHH---HHHHHH-----cCCC-CceeecCChHHH
Q 027527 117 DYLAAKKDVMDASGVALVLIGPGSVEQA---RTFSEQ-----TKFK-GEVYADPNHSSY 166 (222)
Q Consensus 117 ~~L~~~~~~l~~~gv~lvaIs~~s~~~i---~~f~~~-----~~~p-fpil~Dpd~~ly 166 (222)
+...+++.++++.|..++.++.-....+ ++|.++ +++| .+++.-+...++
T Consensus 30 ~~~~~a~~~l~~~G~~ivy~TGRp~~~~~~t~~~l~~~~~~~~~lp~g~li~~~g~~~~ 88 (157)
T smart00775 30 PGVAKLYRDIQNNGYKILYLTARPIGQADRTRSYLSQIKQDGHNLPHGPVLLSPDRLFA 88 (157)
T ss_pred HHHHHHHHHHHHcCCeEEEEcCCcHHHHHHHHHHHHHhhhccccCCCceEEEcCCcchh
Confidence 5566777888889999888877666544 588877 5577 578887776654
No 327
>cd01450 vWFA_subfamily_ECM Von Willebrand factor type A (vWA) domain was originally found in the blood coagulation protein von Willebrand factor (vWF). Typically, the vWA domain is made up of approximately 200 amino acid residues folded into a classic a/b para-rossmann type of fold. The vWA domain, since its discovery, has drawn great interest because of its widespread occurrence and its involvement in a wide variety of important cellular functions. These include basal membrane formation, cell migration, cell differentiation, adhesion, haemostasis, signaling, chromosomal stability, malignant transformation and in immune defenses In integrins these domains form heterodimers while in vWF it forms multimers. There are different interaction surfaces of this domain as seen by the various molecules it complexes with. Ligand binding in most cases is mediated by the presence of a metal ion dependent adhesion site termed as the MIDAS motif that is a characteristic feature of most, if not all A
Probab=28.03 E-value=1.5e+02 Score=22.43 Aligned_cols=34 Identities=15% Similarity=0.293 Sum_probs=23.8
Q ss_pred HHHHhHHHHHhCCCEEEEEcCC--CHHHHHHHHHHc
Q 027527 118 YLAAKKDVMDASGVALVLIGPG--SVEQARTFSEQT 151 (222)
Q Consensus 118 ~L~~~~~~l~~~gv~lvaIs~~--s~~~i~~f~~~~ 151 (222)
...+...++++.|+.++.|+.+ +.+.++++....
T Consensus 120 ~~~~~~~~~~~~~v~v~~i~~g~~~~~~l~~la~~~ 155 (161)
T cd01450 120 DPKEAAAKLKDEGIKVFVVGVGPADEEELREIASCP 155 (161)
T ss_pred chHHHHHHHHHCCCEEEEEeccccCHHHHHHHhCCC
Confidence 4555666677789999999888 446666666543
No 328
>TIGR00035 asp_race aspartate racemase.
Probab=27.86 E-value=1.1e+02 Score=25.89 Aligned_cols=57 Identities=5% Similarity=0.058 Sum_probs=37.2
Q ss_pred HHHHHHHhHHHHHhCCCEEEEEcCCCHHH-HHHHHHHcCCCCceeecCChHHHHHcCC
Q 027527 115 RADYLAAKKDVMDASGVALVLIGPGSVEQ-ARTFSEQTKFKGEVYADPNHSSYEALSF 171 (222)
Q Consensus 115 el~~L~~~~~~l~~~gv~lvaIs~~s~~~-i~~f~~~~~~pfpil~Dpd~~lyk~lGl 171 (222)
-.+.+.+..+.+++.|++.++|.+.+... ..+..+..++|+==..|+..+..+..|.
T Consensus 60 ~~~~l~~~~~~L~~~g~d~iviaCNTah~~~~~l~~~~~iPii~i~~~~~~~~~~~~~ 117 (229)
T TIGR00035 60 PRPILIDIAVKLENAGADFIIMPCNTAHKFAEDIQKAIGIPLISMIEETAEAVKEDGV 117 (229)
T ss_pred HHHHHHHHHHHHHHcCCCEEEECCccHHHHHHHHHHhCCCCEechHHHHHHHHHHcCC
Confidence 34567777788889999999999998854 5556565555543234555444444443
No 329
>cd01460 vWA_midasin VWA_Midasin: Midasin is a member of the AAA ATPase family. The proteins of this family are unified by their common archetectural organization that is based upon a conserved ATPase domain. The AAA domain of midasin contains six tandem AAA protomers. The AAA domains in midasin is followed by a D/E rich domain that is following by a VWA domain. The members of this subgroup have a conserved MIDAS motif. The function of this domain is not exactly known although it has been speculated to play a crucial role in midasin function.
Probab=27.86 E-value=76 Score=28.27 Aligned_cols=18 Identities=17% Similarity=0.036 Sum_probs=9.5
Q ss_pred HHHHhCCCEEEEEcCCCH
Q 027527 124 DVMDASGVALVLIGPGSV 141 (222)
Q Consensus 124 ~~l~~~gv~lvaIs~~s~ 141 (222)
.++.+.|+.++.|+.+++
T Consensus 188 r~a~e~~i~l~~I~ld~~ 205 (266)
T cd01460 188 REAREQNVFVVFIIIDNP 205 (266)
T ss_pred HHHHHcCCeEEEEEEcCC
Confidence 344455555555555543
No 330
>PF12740 Chlorophyllase2: Chlorophyllase enzyme; InterPro: IPR010821 This family consists of several chlorophyllase proteins (3.1.1.14 from EC). Chlorophyllase (Chlase) is the first enzyme involved in chlorophyll degradation and catalyses the hydrolysis of the ester bond to yield chlorophyllide and phytol [, , ].; GO: 0047746 chlorophyllase activity, 0015996 chlorophyll catabolic process
Probab=27.48 E-value=1.5e+02 Score=26.42 Aligned_cols=37 Identities=16% Similarity=0.130 Sum_probs=28.3
Q ss_pred CCeEEEEEEcCCCChhHHHHHHHHHHhHHHHHhCCCEEEEEc
Q 027527 96 DRKAVVAFARHFGCVLCRKRADYLAAKKDVMDASGVALVLIG 137 (222)
Q Consensus 96 ~~~vvVvF~R~~~Cp~C~~el~~L~~~~~~l~~~gv~lvaIs 137 (222)
+...||+|+-++.|.... ..++.+.+...|..+|+..
T Consensus 15 g~yPVv~f~~G~~~~~s~-----Ys~ll~hvAShGyIVV~~d 51 (259)
T PF12740_consen 15 GTYPVVLFLHGFLLINSW-----YSQLLEHVASHGYIVVAPD 51 (259)
T ss_pred CCcCEEEEeCCcCCCHHH-----HHHHHHHHHhCceEEEEec
Confidence 445788898888866554 6677777888999998887
No 331
>TIGR02949 anti_SigH_actin anti-sigma factor, TIGR02949 family. This group of anti-sigma factors are associated in an apparent operon with a family of sigma-70 family sigma factors (TIGR02947). They and appear by homology, tree building, bidirectional best hits and one-to-a-genome distribution, to represent a conserved family. This family is restricted to the Actinobacteria.
Probab=27.41 E-value=68 Score=23.27 Aligned_cols=23 Identities=17% Similarity=0.267 Sum_probs=17.7
Q ss_pred CCChhHHHHHHHHHHhHHHHHhC
Q 027527 107 FGCVLCRKRADYLAAKKDVMDAS 129 (222)
Q Consensus 107 ~~Cp~C~~el~~L~~~~~~l~~~ 129 (222)
..||.|++++...+.....+...
T Consensus 37 ~~C~~C~~e~~~~~~~~~~L~~~ 59 (84)
T TIGR02949 37 EACPECLEEYGLEQAVKKLLKRC 59 (84)
T ss_pred HhCHHHHHHHHHHHHHHHHHHHh
Confidence 47999999998777776766543
No 332
>TIGR02461 osmo_MPG_phos mannosyl-3-phosphoglycerate phosphatase. Members of this family are mannosyl-3-phosphoglycerate phosphatase (EC 3.1.3.70). It acts sequentially after mannosyl-3-phosphoglycerate synthase (EC 2.4.1.217) in a two-step pathway of biosynthesis of the compatible solute mannosylglycerate, a typical osmolyte of thermophiles.
Probab=27.35 E-value=1.7e+02 Score=24.83 Aligned_cols=46 Identities=7% Similarity=0.167 Sum_probs=33.9
Q ss_pred HHhHHHHHhCCCEEEEEcCCCHHHHHHHHHHcCCCCceeecCChHH
Q 027527 120 AAKKDVMDASGVALVLIGPGSVEQARTFSEQTKFKGEVYADPNHSS 165 (222)
Q Consensus 120 ~~~~~~l~~~gv~lvaIs~~s~~~i~~f~~~~~~pfpil~Dpd~~l 165 (222)
.+...++++.|+.++.++.-+...+..+.++.++..++++-....+
T Consensus 21 ~~ai~~l~~~G~~~vi~TgR~~~~~~~~~~~lg~~~~~I~~NGa~I 66 (225)
T TIGR02461 21 REALEELKDLGFPIVFVSSKTRAEQEYYREELGVEPPFIVENGGAI 66 (225)
T ss_pred HHHHHHHHHCCCEEEEEeCCCHHHHHHHHHHcCCCCcEEEcCCcEE
Confidence 4555677789999999988788899999999998655554333333
No 333
>PRK15317 alkyl hydroperoxide reductase subunit F; Provisional
Probab=27.21 E-value=1.5e+02 Score=28.30 Aligned_cols=39 Identities=13% Similarity=0.164 Sum_probs=28.3
Q ss_pred CCeEEEEEEcCCCChhHHHHHHHHHHhHHHHHhCCCEEEEE
Q 027527 96 DRKAVVAFARHFGCVLCRKRADYLAAKKDVMDASGVALVLI 136 (222)
Q Consensus 96 ~~~vvVvF~R~~~Cp~C~~el~~L~~~~~~l~~~gv~lvaI 136 (222)
++|+-|..|-...||+|.+-+..++++..+ ..++..-.|
T Consensus 115 ~~~~~i~~fv~~~Cp~Cp~~v~~~~~~a~~--~~~i~~~~i 153 (517)
T PRK15317 115 DGDFHFETYVSLSCHNCPDVVQALNLMAVL--NPNITHTMI 153 (517)
T ss_pred CCCeEEEEEEcCCCCCcHHHHHHHHHHHHh--CCCceEEEE
Confidence 367778888899999999877777666553 235665556
No 334
>cd03058 GST_N_Tau GST_N family, Class Tau subfamily; GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. The plant-specific class Tau GST subfamily has undergone extensive gene duplication. The Arabidopsis and Oryza genomes contain 28 and 40 Tau GSTs, respectively. They are primarily responsible for herbicide detoxification together with class Phi GSTs, showing class specificity in substrate preference. Tau enzymes are highly efficient in detoxifying diphenylether and aryloxyphenoxypropionate herbicides. In addition, Tau GSTs play important roles in intracellular signalling, biosynthesis of anthocyanin,
Probab=27.00 E-value=89 Score=21.04 Aligned_cols=57 Identities=12% Similarity=0.008 Sum_probs=30.4
Q ss_pred EEcCCCChhHHHHHHHHHHhHHHHHhCCCEEEEEcCCCHHHHHHHHHHcCC--CCceeecCChHHH
Q 027527 103 FARHFGCVLCRKRADYLAAKKDVMDASGVALVLIGPGSVEQARTFSEQTKF--KGEVYADPNHSSY 166 (222)
Q Consensus 103 F~R~~~Cp~C~~el~~L~~~~~~l~~~gv~lvaIs~~s~~~i~~f~~~~~~--pfpil~Dpd~~ly 166 (222)
++....||.|++-...|....- ..+++.+... .....|.+.... ..|++.|.+..++
T Consensus 3 Ly~~~~sp~~~~v~~~l~~~gl-----~~~~~~~~~~--~~~~~~~~~~p~~~~vP~l~~~~~~l~ 61 (74)
T cd03058 3 LLGAWASPFVLRVRIALALKGV-----PYEYVEEDLG--NKSELLLASNPVHKKIPVLLHNGKPIC 61 (74)
T ss_pred EEECCCCchHHHHHHHHHHcCC-----CCEEEEeCcc--cCCHHHHHhCCCCCCCCEEEECCEEee
Confidence 4556789999986665555322 2344444332 222345554432 4677777554433
No 335
>cd02983 P5_C P5 family, C-terminal redox inactive TRX-like domain; P5 is a protein disulfide isomerase (PDI)-related protein with a domain structure of aa'b (where a and a' are redox active TRX domains and b is a redox inactive TRX-like domain). Like PDI, P5 is located in the endoplasmic reticulum (ER) and displays both isomerase and chaperone activities, which are independent of each other. Compared to PDI, the isomerase and chaperone activities of P5 are lower. The first cysteine in the CXXC motif of both redox active domains in P5 is necessary for isomerase activity. The P5 gene was first isolated as an amplified gene from a hydroxyurea-resistant hamster cell line. The zebrafish P5 homolog has been implicated to play a critical role in establishing left/right asymmetries in the embryonic midline. The C-terminal domain is likely involved in substrate binding, similar to the b and b' domains of PDI.
Probab=26.58 E-value=3.1e+02 Score=21.30 Aligned_cols=67 Identities=13% Similarity=0.163 Sum_probs=40.6
Q ss_pred CeEEEEEEcCC--CChhHHHH-HHHHHHhHHHHHhCCCEEEEEcCCCHHHHHHHHHHcCCCCc--eeecCCh
Q 027527 97 RKAVVAFARHF--GCVLCRKR-ADYLAAKKDVMDASGVALVLIGPGSVEQARTFSEQTKFKGE--VYADPNH 163 (222)
Q Consensus 97 ~~vvVvF~R~~--~Cp~C~~e-l~~L~~~~~~l~~~gv~lvaIs~~s~~~i~~f~~~~~~pfp--il~Dpd~ 163 (222)
+-++|.|+.+. .-+-++++ ...|.+...+++.+++.++.|..+....+.++..-.+..+| ++.+.+.
T Consensus 21 ~~C~i~~l~~~~d~~~e~~~~~~~~l~~vAk~~kgk~i~Fv~vd~~~~~~~~~~fgl~~~~~P~v~i~~~~~ 92 (130)
T cd02983 21 QLCIIAFLPHILDCQASCRNKYLEILKSVAEKFKKKPWGWLWTEAGAQLDLEEALNIGGFGYPAMVAINFRK 92 (130)
T ss_pred CeEEEEEcCccccCCHHHHHHHHHHHHHHHHHhcCCcEEEEEEeCcccHHHHHHcCCCccCCCEEEEEeccc
Confidence 46789898774 33345444 55777788888887788888877776554443331122244 4445543
No 336
>TIGR00099 Cof-subfamily Cof subfamily of IIB subfamily of haloacid dehalogenase superfamily. The members of this subfamily are restricted almost exclusively to bacteria (one sequences from S. pombe scores above trusted, while another is between trusted and noise). It is notable that no archaea are found in this group, the closest relations to the archaea found here being two Deinococcus sequences.
Probab=26.53 E-value=2.2e+02 Score=24.11 Aligned_cols=47 Identities=6% Similarity=0.111 Sum_probs=34.1
Q ss_pred HHhHHHHHhCCCEEEEEcCCCHHHHHHHHHHcCCCCceeecCChHHH
Q 027527 120 AAKKDVMDASGVALVLIGPGSVEQARTFSEQTKFKGEVYADPNHSSY 166 (222)
Q Consensus 120 ~~~~~~l~~~gv~lvaIs~~s~~~i~~f~~~~~~pfpil~Dpd~~ly 166 (222)
.+...++++.|+.++.++--+...++++.++.++..++++.....+|
T Consensus 22 ~~~i~~l~~~G~~~~iaTGR~~~~~~~~~~~~~~~~~~I~~NGa~i~ 68 (256)
T TIGR00099 22 KEALAKLREKGIKVVLATGRPYKEVKNILKELGLDTPFITANGAAVI 68 (256)
T ss_pred HHHHHHHHHCCCeEEEEeCCCHHHHHHHHHHcCCCCCEEEcCCcEEE
Confidence 34456677889998888888888999999998887655554444443
No 337
>TIGR00338 serB phosphoserine phosphatase SerB. Phosphoserine phosphatase catalyzes the reaction 3-phospho-serine + H2O = L-serine + phosphate. It catalyzes the last of three steps in the biosynthesis of serine from D-3-phosphoglycerate. Note that this enzyme acts on free phosphoserine, not on phosphoserine residues of phosphoproteins.
Probab=26.49 E-value=1.6e+02 Score=24.18 Aligned_cols=33 Identities=12% Similarity=0.146 Sum_probs=27.2
Q ss_pred hHHHHHhCCCEEEEEcCCCHHHHHHHHHHcCCC
Q 027527 122 KKDVMDASGVALVLIGPGSVEQARTFSEQTKFK 154 (222)
Q Consensus 122 ~~~~l~~~gv~lvaIs~~s~~~i~~f~~~~~~p 154 (222)
+.+.+++.|.++..|+.+....++.+.+..++.
T Consensus 93 ~l~~l~~~g~~~~IvS~~~~~~~~~~l~~~~i~ 125 (219)
T TIGR00338 93 LVKTLKEKGYKVAVISGGFDLFAEHVKDKLGLD 125 (219)
T ss_pred HHHHHHHCCCEEEEECCCcHHHHHHHHHHcCCC
Confidence 345667789999999998888888898888876
No 338
>TIGR02320 PEP_mutase phosphoenolpyruvate phosphomutase. A closely related enzyme, phosphonopyruvate hydrolase from Variovorax sp. Pal2, is excluded from this model.
Probab=26.45 E-value=3.7e+02 Score=24.09 Aligned_cols=55 Identities=7% Similarity=0.183 Sum_probs=37.8
Q ss_pred HhHHHHHhCCCEEEEEc--CCCHHHHHHHHHHcCC---CCceeecC------ChHHHHHcCCcccc
Q 027527 121 AKKDVMDASGVALVLIG--PGSVEQARTFSEQTKF---KGEVYADP------NHSSYEALSFVSGV 175 (222)
Q Consensus 121 ~~~~~l~~~gv~lvaIs--~~s~~~i~~f~~~~~~---pfpil~Dp------d~~lyk~lGl~~~~ 175 (222)
+....+.+.|...|.|- ..+.+++++++++... +.|++.-+ +.+-.+++|+.+-.
T Consensus 173 ~Ra~ay~eAGAD~ifv~~~~~~~~ei~~~~~~~~~~~p~~pl~~~~~~~~~~~~~eL~~lG~~~v~ 238 (285)
T TIGR02320 173 KRAEAYAEAGADGIMIHSRKKDPDEILEFARRFRNHYPRTPLVIVPTSYYTTPTDEFRDAGISVVI 238 (285)
T ss_pred HHHHHHHHcCCCEEEecCCCCCHHHHHHHHHHhhhhCCCCCEEEecCCCCCCCHHHHHHcCCCEEE
Confidence 33455668899988885 4778999999998754 34554422 45567778887753
No 339
>COG0561 Cof Predicted hydrolases of the HAD superfamily [General function prediction only]
Probab=26.42 E-value=1.4e+02 Score=25.32 Aligned_cols=52 Identities=13% Similarity=0.134 Sum_probs=42.1
Q ss_pred HHHHHhHHHHHhCCCEEEEEcCCCHHHHHHHHHHcCCCCceeecCChHHHHH
Q 027527 117 DYLAAKKDVMDASGVALVLIGPGSVEQARTFSEQTKFKGEVYADPNHSSYEA 168 (222)
Q Consensus 117 ~~L~~~~~~l~~~gv~lvaIs~~s~~~i~~f~~~~~~pfpil~Dpd~~lyk~ 168 (222)
+...+...++++.|+.++.++--+...++++.++.+.+.++++.....+|..
T Consensus 23 ~~~~~al~~~~~~g~~v~iaTGR~~~~~~~~~~~l~~~~~~I~~NGa~i~~~ 74 (264)
T COG0561 23 PETKEALARLREKGVKVVLATGRPLPDVLSILEELGLDGPLITFNGALIYNG 74 (264)
T ss_pred HHHHHHHHHHHHCCCEEEEECCCChHHHHHHHHHcCCCccEEEeCCeEEecC
Confidence 3444555578899999988888888999999999999988888777777766
No 340
>PF01136 Peptidase_U32: Peptidase family U32 This is family U32 in the peptidase classification. ; InterPro: IPR001539 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. The peptidases families associated with clan U- have an unknown catalytic mechanism as the protein fold of the active site domain and the active site residues have not been reported. This is a group of peptidases belonging to MEROPS peptidase family U32 (clan U-). The type example is collagenase (gene prtC) from Porphyromonas gingivalis (Bacteroides gingivalis) [], which is an enzyme that degrades type I collagen and that seems to require a metal cofactor. The product of PrtC is evolutionary related to a number of uncharacterised proteins with a well conserved region containing two cysteines.; GO: 0008233 peptidase activity, 0006508 proteolysis
Probab=26.39 E-value=3.1e+02 Score=22.93 Aligned_cols=56 Identities=14% Similarity=0.048 Sum_probs=37.0
Q ss_pred HHHHHHhHHHHHhCCCEEEEEcCCCHHHHHHHHHHcCCCCceeecCC--------hHHHHHcCCccc
Q 027527 116 ADYLAAKKDVMDASGVALVLIGPGSVEQARTFSEQTKFKGEVYADPN--------HSSYEALSFVSG 174 (222)
Q Consensus 116 l~~L~~~~~~l~~~gv~lvaIs~~s~~~i~~f~~~~~~pfpil~Dpd--------~~lyk~lGl~~~ 174 (222)
|.++.+..+++.+.|++-|.|+ ++.. -.++++.+..++|.+|.. .+.++.+|+.+-
T Consensus 1 ~~~~~~~l~~l~~~g~dgi~v~--~~g~-~~~~k~~~~~~~i~~~~~~nv~N~~s~~~~~~~G~~~i 64 (233)
T PF01136_consen 1 LEELEKYLDKLKELGVDGILVS--NPGL-LELLKELGPDLKIIADYSLNVFNSESARFLKELGASRI 64 (233)
T ss_pred ChHHHHHHHHHHhCCCCEEEEc--CHHH-HHHHHHhCCCCcEEEecCccCCCHHHHHHHHHcCCCEE
Confidence 3567778888888888865554 4544 444555567788888866 444666776654
No 341
>PLN02954 phosphoserine phosphatase
Probab=26.00 E-value=1.3e+02 Score=24.66 Aligned_cols=38 Identities=11% Similarity=0.078 Sum_probs=30.2
Q ss_pred HHHHhHHHHHhCCCEEEEEcCCCHHHHHHHHHHcCCCC
Q 027527 118 YLAAKKDVMDASGVALVLIGPGSVEQARTFSEQTKFKG 155 (222)
Q Consensus 118 ~L~~~~~~l~~~gv~lvaIs~~s~~~i~~f~~~~~~pf 155 (222)
.+.+..+.+++.|+.+..|+.+....++...+.++++.
T Consensus 88 g~~e~l~~l~~~g~~~~IvS~~~~~~i~~~l~~~gi~~ 125 (224)
T PLN02954 88 GIPELVKKLRARGTDVYLVSGGFRQMIAPVAAILGIPP 125 (224)
T ss_pred cHHHHHHHHHHCCCEEEEECCCcHHHHHHHHHHhCCCh
Confidence 34445666778899999999988888999999988873
No 342
>KOG0098 consensus GTPase Rab2, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=25.82 E-value=1.7e+02 Score=25.35 Aligned_cols=47 Identities=17% Similarity=0.205 Sum_probs=36.0
Q ss_pred ChhHHHHHHHHHHhHHHHHh---CCCEEEEEcCC---------CHHHHHHHHHHcCCCC
Q 027527 109 CVLCRKRADYLAAKKDVMDA---SGVALVLIGPG---------SVEQARTFSEQTKFKG 155 (222)
Q Consensus 109 Cp~C~~el~~L~~~~~~l~~---~gv~lvaIs~~---------s~~~i~~f~~~~~~pf 155 (222)
..-|++-...|....++++. .|..++.|+.- +.|+.++|++++++.|
T Consensus 87 dit~r~sF~hL~~wL~D~rq~~~~NmvImLiGNKsDL~~rR~Vs~EEGeaFA~ehgLif 145 (216)
T KOG0098|consen 87 DITRRESFNHLTSWLEDARQHSNENMVIMLIGNKSDLEARREVSKEEGEAFAREHGLIF 145 (216)
T ss_pred EccchhhHHHHHHHHHHHHHhcCCCcEEEEEcchhhhhccccccHHHHHHHHHHcCcee
Confidence 45678888888887776653 56888888764 3478999999999976
No 343
>PF11360 DUF3110: Protein of unknown function (DUF3110); InterPro: IPR021503 This family of proteins has no known function.
Probab=25.37 E-value=1.4e+02 Score=22.02 Aligned_cols=64 Identities=17% Similarity=0.235 Sum_probs=36.2
Q ss_pred CCCeEeCCCccCCCeEEEEEEcCCCChhHHHHHHHHHHhHHHHHhCCCEEEEEcCCCHHHHHHHHHHcCCCCceee
Q 027527 84 NGNAIPISDLWKDRKAVVAFARHFGCVLCRKRADYLAAKKDVMDASGVALVLIGPGSVEQARTFSEQTKFKGEVYA 159 (222)
Q Consensus 84 ~G~~v~Lsdl~~~~~vvVvF~R~~~Cp~C~~el~~L~~~~~~l~~~gv~lvaIs~~s~~~i~~f~~~~~~pfpil~ 159 (222)
++-.+++.. +++.+|++|= .. .+=.++...|++.+...-.|-.=+.+.+..||++.|+.+.++.
T Consensus 12 ~eGI~si~~--~~~~~Vl~FE-------~e---dDA~RYa~lLEAqd~~~p~Ve~id~~~i~~fC~~~gy~~~iv~ 75 (86)
T PF11360_consen 12 TEGIYSIQN--KDRNVVLMFE-------DE---DDAERYAGLLEAQDFPDPTVEEIDPEEIEEFCRSAGYEYEIVP 75 (86)
T ss_pred CCcEEEEEe--CCCCEEEEEc-------cH---HHHHHHHHHHHhcCCCCCCeEEECHHHHHHHHHHCCceEEEEC
Confidence 344566653 3567788772 12 2222222333344433333333367899999999999887664
No 344
>PF10790 DUF2604: Protein of Unknown function (DUF2604); InterPro: IPR019726 This entry represents bacterial proteins with undetermined function.
Probab=24.99 E-value=67 Score=22.86 Aligned_cols=28 Identities=11% Similarity=0.202 Sum_probs=23.0
Q ss_pred ccccCcCCCcEEecCCCCeEeCCCccCC
Q 027527 69 EDTKNLLDTVKVYDVNGNAIPISDLWKD 96 (222)
Q Consensus 69 ~~~g~~apdf~L~D~~G~~v~Lsdl~~~ 96 (222)
..+|+++.+-+++|.+|+.++++.-.++
T Consensus 30 gNvgQP~ENWElkDe~G~vlD~~kKveD 57 (76)
T PF10790_consen 30 GNVGQPPENWELKDESGQVLDVNKKVED 57 (76)
T ss_pred cccCCCcccceeeccCCcEeeccchhhh
Confidence 4668899999999999999988765443
No 345
>cd05017 SIS_PGI_PMI_1 The members of this protein family contain the SIS (Sugar ISomerase) domain and have both the phosphoglucose isomerase (PGI) and the phosphomannose isomerase (PMI) functions. These functions catalyze the reversible reactions of glucose 6-phosphate to fructose 6-phosphate, and mannose 6-phosphate to fructose 6-phosphate, respectively at an equal rate. This protein contains two SIS domains. This alignment is based on the first SIS domain.
Probab=24.75 E-value=2.1e+02 Score=21.36 Aligned_cols=51 Identities=18% Similarity=0.229 Sum_probs=33.2
Q ss_pred CCeEEEEEEcCCCChhHHHHHHHHHHhHHHHHhCCCEEEEEcCCCHHHHHHHHHHcCCC
Q 027527 96 DRKAVVAFARHFGCVLCRKRADYLAAKKDVMDASGVALVLIGPGSVEQARTFSEQTKFK 154 (222)
Q Consensus 96 ~~~vvVvF~R~~~Cp~C~~el~~L~~~~~~l~~~gv~lvaIs~~s~~~i~~f~~~~~~p 154 (222)
++.-+++++-..+.- .++.+..+..+++|+.+|+|..+. .+.+++++.+.+
T Consensus 42 ~~~dl~I~iS~SG~t------~e~i~~~~~a~~~g~~iI~IT~~~--~l~~~~~~~~~~ 92 (119)
T cd05017 42 DRKTLVIAVSYSGNT------EETLSAVEQAKERGAKIVAITSGG--KLLEMAREHGVP 92 (119)
T ss_pred CCCCEEEEEECCCCC------HHHHHHHHHHHHCCCEEEEEeCCc--hHHHHHHHcCCc
Confidence 344566677666642 344444455567899999999655 377788876654
No 346
>TIGR02743 TraW type-F conjugative transfer system protein TraW. This protein is an essential component of the F-type conjugative transfer sytem for plasmid DNA transfer and has been shown to be localized to the periplasm.
Probab=24.73 E-value=2.3e+02 Score=24.19 Aligned_cols=61 Identities=13% Similarity=0.161 Sum_probs=41.5
Q ss_pred ChhHHHHHHHHHHhHHHHHhCCCEEEEEcCCCHHHHHHHHHHcCCCCceeecCChHHHHHcCCccccce
Q 027527 109 CVLCRKRADYLAAKKDVMDASGVALVLIGPGSVEQARTFSEQTKFKGEVYADPNHSSYEALSFVSGVLV 177 (222)
Q Consensus 109 Cp~C~~el~~L~~~~~~l~~~gv~lvaIs~~s~~~i~~f~~~~~~pfpil~Dpd~~lyk~lGl~~~~~~ 177 (222)
.+.-.+++.+..+.++.. ..+++|.++ |++.++.+ .+.-++|.|-++.+-+.||++..+..
T Consensus 129 Dg~D~~Qv~wa~~~~~~~--~~~k~IL~~-Gs~~~l~~-----~l~~~vYfdQ~g~Lt~rF~I~~VPav 189 (202)
T TIGR02743 129 DADDPEQLAWAQQQLPSC--PNVKWILTG-GSVNELEK-----RLDSRIYFDQHGKLTQKFGIKHVPAR 189 (202)
T ss_pred eCCCHHHHHHHHHhcccC--CCeEEEEeC-CCHHHHHH-----HhCCceEEcCCchHhhccCceeeceE
Confidence 345566777777655442 247777776 55543322 24567999999999999999988764
No 347
>TIGR00377 ant_ant_sig anti-anti-sigma factor. This superfamily includes small (105-125 residue) proteins related to SpoIIAA of Bacillus subtilis, an anti-anti-sigma factor. SpoIIAA can bind to and inhibit the anti-sigma F factor SpoIIAB. Also, it can be phosphorylated by SpoIIAB on a Ser residue at position 59 of the seed alignment. A similar arrangement is inferred for RsbV, an anti-anti-sigma factor for sigma B. This Ser is fairly well conserved within a motif resembling MXS[STA]G[VIL]X[VIL][VILF] among homologous known or predicted anti-anti-sigma factors. Regions similar to SpoIIAA and apparently homologous, but differing considerably near the phosphorlated Ser of SpoIIAA, appear in a single copy in several longer proteins.
Probab=24.72 E-value=2.1e+02 Score=20.54 Aligned_cols=19 Identities=26% Similarity=0.363 Sum_probs=7.5
Q ss_pred HHHhHHHHHhCCCEEEEEc
Q 027527 119 LAAKKDVMDASGVALVLIG 137 (222)
Q Consensus 119 L~~~~~~l~~~gv~lvaIs 137 (222)
|.+...++++.|..+..++
T Consensus 64 L~~~~~~~~~~~~~~~l~~ 82 (108)
T TIGR00377 64 LLGRYKQVRRVGGQLVLVS 82 (108)
T ss_pred HHHHHHHHHhcCCEEEEEe
Confidence 3333333344444433333
No 348
>PF13344 Hydrolase_6: Haloacid dehalogenase-like hydrolase; PDB: 2HO4_B 1YV9_A 1WVI_B 3EPR_A 2P27_A 2OYC_A 2CFT_A 2P69_A 2CFS_A 2CFR_A ....
Probab=24.66 E-value=2.4e+02 Score=20.79 Aligned_cols=39 Identities=13% Similarity=0.072 Sum_probs=24.5
Q ss_pred HHHHHhHHHHHhCCCEEEEEcCCCH---HHHHHHHHHcCCCC
Q 027527 117 DYLAAKKDVMDASGVALVLIGPGSV---EQARTFSEQTKFKG 155 (222)
Q Consensus 117 ~~L~~~~~~l~~~gv~lvaIs~~s~---~~i~~f~~~~~~pf 155 (222)
+.-.+..+.+++.|..++.++..+. ++..+..+..|++.
T Consensus 17 pga~e~l~~L~~~g~~~~~lTNns~~s~~~~~~~L~~~Gi~~ 58 (101)
T PF13344_consen 17 PGAVEALDALRERGKPVVFLTNNSSRSREEYAKKLKKLGIPV 58 (101)
T ss_dssp TTHHHHHHHHHHTTSEEEEEES-SSS-HHHHHHHHHHTTTT-
T ss_pred cCHHHHHHHHHHcCCCEEEEeCCCCCCHHHHHHHHHhcCcCC
Confidence 3445667778889999999988753 34444445556653
No 349
>TIGR02317 prpB methylisocitrate lyase. Members of this family are methylisocitrate lyase, also called (2S,3R)-3-hydroxybutane-1,2,3-tricarboxylate pyruvate-lyase. This enzyme acts in propionate metabolism. It cleaves a carbon-carbon bond to convert 2-methylisocitrate to pyruvate plus succinate. Some members of this family have been annotated, incorrectly it seems, as the related protein carboxyphosphoenolpyruvate phosphomutase, which is involved in synthesizing the antibiotic bialaphos in Streptomyces hygroscopicus.
Probab=24.60 E-value=3.9e+02 Score=23.95 Aligned_cols=54 Identities=11% Similarity=0.143 Sum_probs=36.7
Q ss_pred hHHHHHhCCCEEEEE-cCCCHHHHHHHHHHcCCCC--ceeec-----CChHHHHHcCCcccc
Q 027527 122 KKDVMDASGVALVLI-GPGSVEQARTFSEQTKFKG--EVYAD-----PNHSSYEALSFVSGV 175 (222)
Q Consensus 122 ~~~~l~~~gv~lvaI-s~~s~~~i~~f~~~~~~pf--pil~D-----pd~~lyk~lGl~~~~ 175 (222)
....+.+.|...|.| +..+.+++++|+++...|. .++.- .+.+-.+++|+++-.
T Consensus 166 Ra~ay~~AGAD~vfi~g~~~~e~i~~~~~~i~~Pl~~n~~~~~~~p~~s~~eL~~lGv~~v~ 227 (285)
T TIGR02317 166 RAKAYVEAGADMIFPEALTSLEEFRQFAKAVKVPLLANMTEFGKTPLFTADELREAGYKMVI 227 (285)
T ss_pred HHHHHHHcCCCEEEeCCCCCHHHHHHHHHhcCCCEEEEeccCCCCCCCCHHHHHHcCCcEEE
Confidence 345567899998887 5567899999999876554 22211 234557778887764
No 350
>cd01018 ZntC Metal binding protein ZntC. These proteins are predicted to function as initial receptors in ABC transport of metal ions. They belong to the TroA superfamily of helical backbone metal receptor proteins that share a distinct fold and ligand binding mechanism. They are comprised of two globular subdomains connected by a long alpha helix and bind their specific ligands in the cleft between these domains. In addition, many of these proteins possess a metal-binding histidine-rich motif (repetitive HDH sequence).
Probab=24.36 E-value=2.1e+02 Score=24.88 Aligned_cols=38 Identities=21% Similarity=0.289 Sum_probs=20.7
Q ss_pred HHHHHhHHHHHhCCCEEEEEcCCC-HHHHHHHHHHcCCC
Q 027527 117 DYLAAKKDVMDASGVALVLIGPGS-VEQARTFSEQTKFK 154 (222)
Q Consensus 117 ~~L~~~~~~l~~~gv~lvaIs~~s-~~~i~~f~~~~~~p 154 (222)
.+|+++.+.+++.++++|.+-... ...++..++++|++
T Consensus 204 ~~l~~l~~~ik~~~v~~if~e~~~~~~~~~~la~~~g~~ 242 (266)
T cd01018 204 ADLKRLIDLAKEKGVRVVFVQPQFSTKSAEAIAREIGAK 242 (266)
T ss_pred HHHHHHHHHHHHcCCCEEEEcCCCCcHHHHHHHHHcCCe
Confidence 345555555666666666654442 24455555666654
No 351
>cd03056 GST_N_4 GST_N family, unknown subfamily 4; composed of uncharacterized bacterial proteins with similarity to GSTs. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains.
Probab=24.22 E-value=91 Score=20.54 Aligned_cols=57 Identities=12% Similarity=-0.124 Sum_probs=29.9
Q ss_pred EEcCCCChhHHHHHHHHHHhHHHHHhCCCEEEEEcCCCH-HHHHHHHHHcCC-CCceeecCChH
Q 027527 103 FARHFGCVLCRKRADYLAAKKDVMDASGVALVLIGPGSV-EQARTFSEQTKF-KGEVYADPNHS 164 (222)
Q Consensus 103 F~R~~~Cp~C~~el~~L~~~~~~l~~~gv~lvaIs~~s~-~~i~~f~~~~~~-pfpil~Dpd~~ 164 (222)
+|...+||.|++-...|.... ...+.+-|..... .....|.+.... ..|++.|.+..
T Consensus 3 Ly~~~~~~~~~~v~~~l~~~~-----~~~~~~~i~~~~~~~~~~~~~~~~p~~~vP~l~~~~~~ 61 (73)
T cd03056 3 LYGFPLSGNCYKVRLLLALLG-----IPYEWVEVDILKGETRTPEFLALNPNGEVPVLELDGRV 61 (73)
T ss_pred EEeCCCCccHHHHHHHHHHcC-----CCcEEEEecCCCcccCCHHHHHhCCCCCCCEEEECCEE
Confidence 456778999996544444332 2234455543221 223445554433 36888776543
No 352
>PF08285 DPM3: Dolichol-phosphate mannosyltransferase subunit 3 (DPM3); InterPro: IPR013174 This family corresponds to subunit 3 of dolichol-phosphate mannosyltransferase, an enzyme which generates mannosyl donors for glycosylphosphatidylinositols, N-glycan and protein O- and C-mannosylation. DPM3 is an integral membrane protein and plays a role in stabilising the dolichol-phosphate mannosyl transferase complex [].
Probab=24.17 E-value=80 Score=23.59 Aligned_cols=27 Identities=19% Similarity=0.250 Sum_probs=20.4
Q ss_pred CCChhHHHHHH-HHHHhHHHHHhCCCEE
Q 027527 107 FGCVLCRKRAD-YLAAKKDVMDASGVAL 133 (222)
Q Consensus 107 ~~Cp~C~~el~-~L~~~~~~l~~~gv~l 133 (222)
..||-..+|+. ++.+.+++++++|+++
T Consensus 64 nDcpeA~~eL~~eI~eAK~dLr~kGv~~ 91 (91)
T PF08285_consen 64 NDCPEAAKELQKEIKEAKADLRKKGVDV 91 (91)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHcCCCC
Confidence 45777777764 7777888999999864
No 353
>PF08282 Hydrolase_3: haloacid dehalogenase-like hydrolase; InterPro: IPR013200 The Haloacid Dehydrogenase (HAD) superfamily includes phosphatases, phosphonatases, P-type ATPases, beta-phosphoglucomutases, phosphomannomutases, and dehalogenases, which are involved in a variety of cellular processes ranging from amino acid biosynthesis to detoxification []. This HAD domain is found in several distinct enzymes including: Phospholipid-transporting ATPase 1 (3.6.3.1 from EC), a putative lipid-flipping enzyme involved in cold tolerance in Arabidopsis [] 3-deoxy-D-manno-octulosonate (KDO) 8-phosphate phosphatase (3.1.3.45 from EC), which catalyses the final step in the biosynthesis of KDO - a component of lipopolysaccharide in Gram-negative bacteria [] Mannosyl-3-phosphoglycerate phosphatase (3.1.3.70 from EC), which hydrolyzes mannosyl-3-phosphoglycerate to form the osmolyte mannosylglycerate [] Phosphoglycolate phopshatase (3.1.3.18 from EC), which catalyses the dephosphorylation of 2-phosphoglycolate [] ; PDB: 2B30_B 3R4C_A 1XVI_B 3IJ5_B 3MMZ_C 3L7Y_A 1XPJ_C 1RLT_B 1RLM_B 2HF2_A ....
Probab=23.87 E-value=2.3e+02 Score=22.94 Aligned_cols=47 Identities=9% Similarity=0.070 Sum_probs=33.8
Q ss_pred HHHHhHHHHHhCCCEEEEEcCCCHHHHHHHHHHcCCCCceeecCChH
Q 027527 118 YLAAKKDVMDASGVALVLIGPGSVEQARTFSEQTKFKGEVYADPNHS 164 (222)
Q Consensus 118 ~L~~~~~~l~~~gv~lvaIs~~s~~~i~~f~~~~~~pfpil~Dpd~~ 164 (222)
+..+...++.+.|+.++..+--+...++.+.++.++..++++....-
T Consensus 19 ~~~~al~~l~~~g~~~~i~TGR~~~~~~~~~~~~~~~~~~I~~nGa~ 65 (254)
T PF08282_consen 19 ETIEALKELQEKGIKLVIATGRSYSSIKRLLKELGIDDYFICSNGAL 65 (254)
T ss_dssp HHHHHHHHHHHTTCEEEEECSSTHHHHHHHHHHTTHCSEEEEGGGTE
T ss_pred HHHHHHHhhcccceEEEEEccCcccccccccccccchhhhcccccce
Confidence 33444456777899888777778889999999999886665544333
No 354
>PLN02834 3-dehydroquinate synthase
Probab=23.73 E-value=3.5e+02 Score=25.69 Aligned_cols=36 Identities=22% Similarity=0.258 Sum_probs=24.8
Q ss_pred HHHHHHHHhHHHHHhCCC----EEEEEcCCCHHHHHHHHH
Q 027527 114 KRADYLAAKKDVMDASGV----ALVLIGPGSVEQARTFSE 149 (222)
Q Consensus 114 ~el~~L~~~~~~l~~~gv----~lvaIs~~s~~~i~~f~~ 149 (222)
+.+..+.+.++.+.+.|+ -||+||-|..-.+.+|+.
T Consensus 144 ksl~~v~~~~~~l~~~~~dr~~~VIAiGGGsv~D~ak~~A 183 (433)
T PLN02834 144 KDMETLMKVFDKALESRLDRRCTFVALGGGVIGDMCGFAA 183 (433)
T ss_pred CCHHHHHHHHHHHHhcCCCcCcEEEEECChHHHHHHHHHH
Confidence 445556666666666554 599999998877777764
No 355
>cd01473 vWA_CTRP CTRP for CS protein-TRAP-related protein: Adhesion of Plasmodium to host cells is an important phenomenon in parasite invasion and in malaria associated pathology.CTRP encodes a protein containing a putative signal sequence followed by a long extracellular region of 1990 amino acids, a transmembrane domain, and a short cytoplasmic segment. The extracellular region of CTRP contains two separated adhesive domains. The first domain contains six 210-amino acid-long homologous VWA domain repeats. The second domain contains seven repeats of 87-60 amino acids in length, which share similarities with the thrombospondin type 1 domain found in a variety of adhesive molecules. Finally, CTRP also contains consensus motifs found in the superfamily of haematopoietin receptors. The VWA domains in these proteins likely mediate protein-protein interactions.
Probab=23.72 E-value=94 Score=25.73 Aligned_cols=24 Identities=21% Similarity=0.372 Sum_probs=19.0
Q ss_pred HHHhHHHHHhCCCEEEEEcCCCHH
Q 027527 119 LAAKKDVMDASGVALVLIGPGSVE 142 (222)
Q Consensus 119 L~~~~~~l~~~gv~lvaIs~~s~~ 142 (222)
+.+..+++++.||++++||.|+.+
T Consensus 128 ~~~~a~~lk~~gV~i~~vGiG~~~ 151 (192)
T cd01473 128 LQDISLLYKEENVKLLVVGVGAAS 151 (192)
T ss_pred HHHHHHHHHHCCCEEEEEEecccc
Confidence 445566788999999999999753
No 356
>TIGR03351 PhnX-like phosphonatase-like hydrolase. This clade of sequences are the closest homologs to the PhnX enzyme, phosphonoacetaldehyde (Pald) hydrolase (phosphonatase, TIGR01422). This phosphonatase-like enzyme and PhnX itself are members of the haloacid dehalogenase (HAD) superfamily (pfam00702) having a a number of distinctive features that set them apart from typical HAD enzymes. The typical HAD N-terminal motif DxDx(T/V) here is DxAGT and the usual conserved lysine prior to the C-terminal motif is instead an arginine. Also distinctive of phosphonatase, and particular to its bi-catalytic mechanism is a conserved lysine in the variable "cap" domain. This lysine forms a Schiff base with the aldehyde of phosphonoacetaldehyde, providing, through the resulting positive charge, a polarization of the C-P bond necesary for cleavage as well as a route to the initial product of cleavage, an ene-amine. The conservation of these elements in this phosphonatase-like enzyme suggests that the
Probab=23.71 E-value=2.1e+02 Score=23.46 Aligned_cols=36 Identities=14% Similarity=0.154 Sum_probs=28.0
Q ss_pred HHHhHHHHHhCCCEEEEEcCCCHHHHHHHHHHcCCC
Q 027527 119 LAAKKDVMDASGVALVLIGPGSVEQARTFSEQTKFK 154 (222)
Q Consensus 119 L~~~~~~l~~~gv~lvaIs~~s~~~i~~f~~~~~~p 154 (222)
+.++.+.+++.|+.+..|+....+.++...+..++.
T Consensus 92 ~~~~L~~L~~~g~~~~ivT~~~~~~~~~~l~~~~l~ 127 (220)
T TIGR03351 92 AEEAFRSLRSSGIKVALTTGFDRDTAERLLEKLGWT 127 (220)
T ss_pred HHHHHHHHHHCCCEEEEEeCCchHHHHHHHHHhhhh
Confidence 344556777889999988888888888888877775
No 357
>cd00851 MTH1175 This uncharacterized conserved protein belongs to a family of iron-molybdenum cluster-binding proteins that includes NifX, NifB, and NifY, all of which are involved in the synthesis of an iron-molybdenum cofactor (FeMo-co) that binds the active site of the dinitrogenase enzyme. This domain is a predicted small-molecule-binding domain (SMBD) with an alpha/beta fold that is present either as a stand-alone domain (e.g. NifX and NifY) or fused to another conserved domain (e.g. NifB) however, its function is still undetermined.The SCOP database suggests that this domain is most similar to structures within the ribonuclease H superfamily. This conserved domain is represented in two of the three major divisions of life (bacteria and archaea).
Probab=23.66 E-value=2.8e+02 Score=19.76 Aligned_cols=24 Identities=17% Similarity=0.155 Sum_probs=16.4
Q ss_pred cccCcCCCcEEecCCCCeEeCCCc
Q 027527 70 DTKNLLDTVKVYDVNGNAIPISDL 93 (222)
Q Consensus 70 ~~g~~apdf~L~D~~G~~v~Lsdl 93 (222)
.-...++.|.+.|.+++.+.+.+.
T Consensus 16 ~hFg~a~~f~i~d~~~~~~~~~~~ 39 (103)
T cd00851 16 PHFGRAPYFLIYDVETGKIKNVEV 39 (103)
T ss_pred CccccCCEEEEEEccCCcEeEEEE
Confidence 334578899999988775544443
No 358
>PF15632 ATPgrasp_Ter: ATP-grasp in the biosynthetic pathway with Ter operon
Probab=23.60 E-value=1.6e+02 Score=27.00 Aligned_cols=58 Identities=24% Similarity=0.299 Sum_probs=37.4
Q ss_pred HHHHHHHhHHHHHhCCCEEEEEc-CC------CHHHHHHHHHHcCCCCc--eeecCChH---HHHHcCCc
Q 027527 115 RADYLAAKKDVMDASGVALVLIG-PG------SVEQARTFSEQTKFKGE--VYADPNHS---SYEALSFV 172 (222)
Q Consensus 115 el~~L~~~~~~l~~~gv~lvaIs-~~------s~~~i~~f~~~~~~pfp--il~Dpd~~---lyk~lGl~ 172 (222)
+...|++..++|++.|++|+..+ .+ +....-+++++.++|.| ...+.-.+ .|..++..
T Consensus 75 ~~~~l~~~r~~F~a~Gv~l~~~~~~~~l~~~~dK~~~y~~~~~~~ipvp~~~~v~t~~el~~a~~~l~~~ 144 (329)
T PF15632_consen 75 NRELLAAHRDEFEALGVKLLTASSAETLELADDKAAFYEFMEANGIPVPPYWRVRTADELKAAYEELRFP 144 (329)
T ss_pred cHHHHHHHHHHHHHhCCEEEecCCHHHHHHHhhHHHHHHHHHhCCCCCCCEEEeCCHHHHHHHHHhcCCC
Confidence 34559999999999999999832 11 22455568888888865 33443333 35555443
No 359
>TIGR01491 HAD-SF-IB-PSPlk HAD-superfamily, subfamily-IB PSPase-like hydrolase, archaeal. This hypothetical equivalog is a member of the IB subfamily (TIGR01488) of the haloacid dehalogenase (HAD) superfamily of aspartate-nucleophile hydrolases. The sequences modelled by this alignment are all from archaeal species. The phylogenetically closest group of sequences to these are phosphoserine phosphatases (TIGR00338). There are no known archaeal phosphoserine phosphatases, and no archaea fall within TIGR00338. It is likely, then, that This model represents the archaeal branch of the PSPase equivalog.
Probab=23.50 E-value=1.7e+02 Score=23.39 Aligned_cols=34 Identities=12% Similarity=0.176 Sum_probs=26.6
Q ss_pred HhHHHHHhCCCEEEEEcCCCHHHHHHHHHHcCCC
Q 027527 121 AKKDVMDASGVALVLIGPGSVEQARTFSEQTKFK 154 (222)
Q Consensus 121 ~~~~~l~~~gv~lvaIs~~s~~~i~~f~~~~~~p 154 (222)
+..+.+++.|+.++.|+.+....++...+.+++.
T Consensus 87 e~l~~l~~~g~~~~IvS~~~~~~~~~~l~~~g~~ 120 (201)
T TIGR01491 87 ELVRWLKEKGLKTAIVSGGIMCLAKKVAEKLNPD 120 (201)
T ss_pred HHHHHHHHCCCEEEEEeCCcHHHHHHHHHHhCCC
Confidence 3455667789999999988878888888888765
No 360
>PF01206 TusA: Sulfurtransferase TusA; InterPro: IPR001455 SirA functions as a response regulator as part of a two-component system, where BarA is the sensor kinase. This system increases the expression of virulence genes and decreases the expression of motility genes []. BarA phosphorylates SirA, thereby activating the protein. Phosphorylated SirA directly activates virulence expression by interacting with hilA and hilC promoters, while repressing the flagellar regulon indirectly by binding to the csrB promoter, which in turn affects flagellar gene expression. Orthologues of SirA from Salmonella spp. can be found throughout proteobacteria, such as GacA in Psuedomonas spp., VarA in Vibrio cholerae, ExpA in Erwinia carotovora, LetA in Legionella pneumophila, and UvrY in Escherichia coli []. A sensor kinase for SirA is present in each of these organisms as well; the sensor kinase is known as BarA in E. coli and Salmonella spp., but has different names in other genera. In different species, SirA/BarA orthologues are required for virulence gene expression, exoenzyme and antibiotic production, motility, and biofilm formation. The structure of SirA consists of an alpha/beta sandwich with a beta-alpha-beta-alpha-beta(2) fold, comprising a mixed four-stranded beta-sheet stacked against two alpha-helices, both of which are nearly parallel to the strands of the beta-sheet []. Several uncharacterised bacterial proteins (73 to 81 amino-acid residues in length) that contain a well-conserved region in their N-terminal region show structural similarity to the SirA protein, including the E. coli protein YedF (P0AA31 from SWISSPROT), and other members of the UPF0033 family.; GO: 0016783 sulfurtransferase activity, 0008033 tRNA processing, 0005737 cytoplasm; PDB: 3LVJ_D 3LVK_B 1DCJ_A 3HZ7_A 1JDQ_A 1JE3_A 1PAV_A.
Probab=23.39 E-value=2.4e+02 Score=18.95 Aligned_cols=56 Identities=14% Similarity=0.186 Sum_probs=32.4
Q ss_pred EEEEcCCCChhHHHHHHHHHHhHHHHHhCCCEEEEEcCCC--HHHHHHHHHHcCCCCceeec
Q 027527 101 VAFARHFGCVLCRKRADYLAAKKDVMDASGVALVLIGPGS--VEQARTFSEQTKFKGEVYAD 160 (222)
Q Consensus 101 VvF~R~~~Cp~C~~el~~L~~~~~~l~~~gv~lvaIs~~s--~~~i~~f~~~~~~pfpil~D 160 (222)
.+..|+.-||...-.+ .+..+++ +.|-.+.++..+. .+.+..|++++|+.+--..+
T Consensus 2 ~lD~rg~~CP~Pll~~---~~~l~~l-~~G~~l~v~~d~~~~~~di~~~~~~~g~~~~~~~~ 59 (70)
T PF01206_consen 2 TLDLRGLSCPMPLLKA---KKALKEL-PPGEVLEVLVDDPAAVEDIPRWCEENGYEVVEVEE 59 (70)
T ss_dssp EEECSS-STTHHHHHH---HHHHHTS-GTT-EEEEEESSTTHHHHHHHHHHHHTEEEEEEEE
T ss_pred EEeCCCCCCCHHHHHH---HHHHHhc-CCCCEEEEEECCccHHHHHHHHHHHCCCEEEEEEE
Confidence 3567889999875332 2222333 3454454444443 37899999999987544433
No 361
>TIGR02471 sucr_syn_bact_C sucrose phosphate synthase, sucrose phosphatase-like domain, bacterial. Sucrose phosphate synthase (SPS) and sucrose phosphate phosphatase (SPP) are the last two enzymes of sucrose biosynthesis. In cyanobacteria and plants, the C-terminal region of most or all versions of SPS has a domain homologous to the known SPP. This domain may serve a binding or regulatory rather than catalytic function. Sequences in this family are bacterial C-terminal regions found in all but two of the putative bacterial sucrose phosphate synthases described by TIGR02472.
Probab=23.31 E-value=2e+02 Score=24.14 Aligned_cols=47 Identities=13% Similarity=0.060 Sum_probs=33.6
Q ss_pred HHHHhHHHHHhCCCEEEEEcCCCHHHHHHHHHHcCCCCc--eeecCChHH
Q 027527 118 YLAAKKDVMDASGVALVLIGPGSVEQARTFSEQTKFKGE--VYADPNHSS 165 (222)
Q Consensus 118 ~L~~~~~~l~~~gv~lvaIs~~s~~~i~~f~~~~~~pfp--il~Dpd~~l 165 (222)
.+.+... ..++|+.++.++--+...++++.++.+++.+ ++++....+
T Consensus 19 ~~~~~~~-~~~~gi~~viaTGR~~~~v~~~~~~l~l~~~~~~I~~nGa~i 67 (236)
T TIGR02471 19 SFVELLR-GSGDAVGFGIATGRSVESAKSRYAKLNLPSPDVLIARVGTEI 67 (236)
T ss_pred HHHHHHH-hcCCCceEEEEeCCCHHHHHHHHHhCCCCCCCEEEECCCceE
Confidence 3334333 4678998888888888999999999888655 666655544
No 362
>TIGR00213 GmhB_yaeD D,D-heptose 1,7-bisphosphate phosphatase. This family of proteins formerly designated yaeD resembles the histidinol phosphatase domain of the bifunctional protein HisB. The member from E. coli has been characterized as D,D-heptose 1,7-bisphosphate phosphatase, GmhB, involved in inner core LPS assembly (PubMed:11751812).
Probab=23.27 E-value=3.1e+02 Score=21.92 Aligned_cols=24 Identities=29% Similarity=0.277 Sum_probs=19.5
Q ss_pred HHHHHhHHHHHhCCCEEEEEcCCC
Q 027527 117 DYLAAKKDVMDASGVALVLIGPGS 140 (222)
Q Consensus 117 ~~L~~~~~~l~~~gv~lvaIs~~s 140 (222)
+.+.+...++++.|+++.+++..+
T Consensus 29 pgv~e~L~~Lk~~G~~l~i~TN~~ 52 (176)
T TIGR00213 29 DGVIDALRELKKMGYALVLVTNQS 52 (176)
T ss_pred CCHHHHHHHHHHCCCEEEEEeCCc
Confidence 456677888889999999998765
No 363
>TIGR01487 SPP-like sucrose-phosphate phosphatase-like hydrolase, Archaeal. TIGR01482, in turn, is a member of the IIB subfamily (TIGR01484) of the Haloacid Dehalogenase (HAD) superfamily of aspartate-nucleophile hydrolases.
Probab=23.20 E-value=2.4e+02 Score=23.16 Aligned_cols=42 Identities=19% Similarity=0.201 Sum_probs=30.3
Q ss_pred HHHHhHHHHHhCCCEEEEEcCCCHHHHHHHHHHcCCCCceee
Q 027527 118 YLAAKKDVMDASGVALVLIGPGSVEQARTFSEQTKFKGEVYA 159 (222)
Q Consensus 118 ~L~~~~~~l~~~gv~lvaIs~~s~~~i~~f~~~~~~pfpil~ 159 (222)
...+...++++.|+.++..+--+...++++.++.++..++++
T Consensus 22 ~~~~~i~~l~~~g~~~~~~TGR~~~~~~~~~~~l~~~~~~i~ 63 (215)
T TIGR01487 22 RAIEAIRKAEKKGIPVSLVTGNTVPFARALAVLIGTSGPVVA 63 (215)
T ss_pred HHHHHHHHHHHCCCEEEEEcCCcchhHHHHHHHhCCCCcEEE
Confidence 444556667788998887777777888888888887744443
No 364
>COG4469 CoiA Competence protein CoiA-like family, contains a predicted nuclease domain [General function prediction only]
Probab=23.01 E-value=20 Score=33.08 Aligned_cols=35 Identities=17% Similarity=0.338 Sum_probs=25.7
Q ss_pred cEEecCCCCeEeCCCccCCCeEEEEEEcCCCChhHHHHHH
Q 027527 78 VKVYDVNGNAIPISDLWKDRKAVVAFARHFGCVLCRKRAD 117 (222)
Q Consensus 78 f~L~D~~G~~v~Lsdl~~~~~vvVvF~R~~~Cp~C~~el~ 117 (222)
++..|.+|+.|.+-+-+.+... - .+.||.|-.++.
T Consensus 2 ltA~~~ngq~v~ll~~~~k~~~--~---~ffCPaC~~~l~ 36 (342)
T COG4469 2 LTAKDENGQTVNLLTALQKTQL--Q---RFFCPACGSQLI 36 (342)
T ss_pred ceeecCCCCEEEehhhHHHhhh--h---ccccCCCCCeee
Confidence 5778999999999887543321 1 488999988664
No 365
>KOG0713 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=22.93 E-value=28 Score=32.17 Aligned_cols=36 Identities=25% Similarity=0.466 Sum_probs=28.4
Q ss_pred CCCHHHHHHHHHHcCCCCceeecCC-hHHHHHcCCcccc
Q 027527 138 PGSVEQARTFSEQTKFKGEVYADPN-HSSYEALSFVSGV 175 (222)
Q Consensus 138 ~~s~~~i~~f~~~~~~pfpil~Dpd-~~lyk~lGl~~~~ 175 (222)
++++....+|.+- +..|++|+||+ |+.|..+| ..++
T Consensus 50 pddp~A~e~F~~i-n~AYEVLsDpekRk~YD~~G-EegL 86 (336)
T KOG0713|consen 50 PDDPNANEKFKEI-NAAYEVLSDPEKRKHYDTYG-EEGL 86 (336)
T ss_pred CCCHHHHHHHHHH-HHHHHHhcCHHHHHHHHhhh-Hhhh
Confidence 5678888888765 78899999988 78899999 4443
No 366
>COG0066 LeuD 3-isopropylmalate dehydratase small subunit [Amino acid transport and metabolism]
Probab=22.83 E-value=1.1e+02 Score=26.05 Aligned_cols=30 Identities=23% Similarity=0.546 Sum_probs=22.0
Q ss_pred EEEEEEcCCCChhHHHHHHHHHHhHHHHHhCCCEEE
Q 027527 99 AVVAFARHFGCVLCRKRADYLAAKKDVMDASGVALV 134 (222)
Q Consensus 99 vvVvF~R~~~Cp~C~~el~~L~~~~~~l~~~gv~lv 134 (222)
.+||--+.|||...|||+++ .|++.|++.|
T Consensus 64 ~IlVag~NFGcGSSREHApw------ALk~~Gi~~V 93 (191)
T COG0066 64 DILVAGENFGCGSSREHAPW------ALKDYGIRAV 93 (191)
T ss_pred cEEEecCCCCCCccHHHHHH------HHHHcCeeEE
Confidence 46666699999999999985 3455666544
No 367
>PF01583 APS_kinase: Adenylylsulphate kinase; InterPro: IPR002891 Protein phosphorylation, which plays a key role in most cellular activities, is a reversible process mediated by protein kinases and phosphoprotein phosphatases. Protein kinases catalyse the transfer of the gamma phosphate from nucleotide triphosphates (often ATP) to one or more amino acid residues in a protein substrate side chain, resulting in a conformational change affecting protein function. Phosphoprotein phosphatases catalyse the reverse process. Protein kinases fall into three broad classes, characterised with respect to substrate specificity []: Serine/threonine-protein kinases Tyrosine-protein kinases Dual specific protein kinases (e.g. MEK - phosphorylates both Thr and Tyr on target proteins) Protein kinase function has been evolutionarily conserved from Escherichia coli to human []. Protein kinases play a role in a multitude of cellular processes, including division, proliferation, apoptosis, and differentiation []. Phosphorylation usually results in a functional change of the target protein by changing enzyme activity, cellular location, or association with other proteins. The catalytic subunits of protein kinases are highly conserved, and several structures have been solved [], leading to large screens to develop kinase-specific inhibitors for the treatments of a number of diseases []. This domain contains an ATP binding P-loop motif [].; GO: 0005524 ATP binding, 0016301 kinase activity, 0016772 transferase activity, transferring phosphorus-containing groups, 0000103 sulfate assimilation; PDB: 1M7H_B 1M7G_B 3CR7_B 1D6J_A 2OFW_G 1X6V_B 1XNJ_A 1XJQ_B 2PEY_A 2PEZ_B ....
Probab=22.74 E-value=2.1e+02 Score=23.37 Aligned_cols=55 Identities=13% Similarity=0.187 Sum_probs=34.8
Q ss_pred HHHHHHHHHhHHHHHhCCCEEEEEcCCCHHHHHHHHHHcCC--C-CceeecCChHHHH
Q 027527 113 RKRADYLAAKKDVMDASGVALVLIGPGSVEQARTFSEQTKF--K-GEVYADPNHSSYE 167 (222)
Q Consensus 113 ~~el~~L~~~~~~l~~~gv~lvaIs~~s~~~i~~f~~~~~~--p-fpil~Dpd~~lyk 167 (222)
.+.+..+.++...|.+.|+.+|+-.....++.+++..+.-- . ++||.|-..+..+
T Consensus 57 ~e~~rr~~~~A~ll~~~G~ivIva~isp~~~~R~~~R~~~~~~~f~eVyv~~~~e~~~ 114 (156)
T PF01583_consen 57 EENIRRIAEVAKLLADQGIIVIVAFISPYREDREWARELIPNERFIEVYVDCPLEVCR 114 (156)
T ss_dssp HHHHHHHHHHHHHHHHTTSEEEEE----SHHHHHHHHHHHHTTEEEEEEEES-HHHHH
T ss_pred HHHHHHHHHHHHHHHhCCCeEEEeeccCchHHHHHHHHhCCcCceEEEEeCCCHHHHH
Confidence 45666777778888899998777666666777777665333 2 4788887665544
No 368
>PRK10826 2-deoxyglucose-6-phosphatase; Provisional
Probab=22.37 E-value=2.2e+02 Score=23.42 Aligned_cols=35 Identities=9% Similarity=0.133 Sum_probs=27.1
Q ss_pred HHhHHHHHhCCCEEEEEcCCCHHHHHHHHHHcCCC
Q 027527 120 AAKKDVMDASGVALVLIGPGSVEQARTFSEQTKFK 154 (222)
Q Consensus 120 ~~~~~~l~~~gv~lvaIs~~s~~~i~~f~~~~~~p 154 (222)
.+....+++.|+++..++......++.+.++.++.
T Consensus 98 ~~~l~~l~~~g~~~~i~S~~~~~~~~~~l~~~~l~ 132 (222)
T PRK10826 98 REALALCKAQGLKIGLASASPLHMLEAVLTMFDLR 132 (222)
T ss_pred HHHHHHHHHCCCeEEEEeCCcHHHHHHHHHhCcch
Confidence 33445667889999999998888888888888764
No 369
>PRK10674 deoxyribodipyrimidine photolyase; Provisional
Probab=22.37 E-value=4.7e+02 Score=24.88 Aligned_cols=45 Identities=16% Similarity=0.254 Sum_probs=33.0
Q ss_pred HHHHHHHhHHHHHhCCCEEEEEcC---CCH-HHHHHHHHHcCCCCceeec
Q 027527 115 RADYLAAKKDVMDASGVALVLIGP---GSV-EQARTFSEQTKFKGEVYAD 160 (222)
Q Consensus 115 el~~L~~~~~~l~~~gv~lvaIs~---~s~-~~i~~f~~~~~~pfpil~D 160 (222)
.+..|.++..+|++.|+.++++.. |++ +.+.++++++++.- |+.+
T Consensus 55 l~esL~~L~~~L~~~g~~L~v~~g~~~g~~~~vl~~l~~~~~i~~-v~~~ 103 (472)
T PRK10674 55 INAQLNALQIALAEKGIPLLFHEVDDFAASVEWLKQFCQQHQVTH-LFYN 103 (472)
T ss_pred HHHHHHHHHHHHHHcCCceEEEecCCcCCHHHHHHHHHHHcCCCE-EEEe
Confidence 345788888899999999988864 455 56788888877543 5554
No 370
>cd06556 ICL_KPHMT Members of the ICL/PEPM_KPHMT enzyme superfamily catalyze the formation and cleavage of either P-C or C-C bonds. Typical members are phosphoenolpyruvate mutase (PEPM), phosphonopyruvate hydrolase (PPH), carboxyPEP mutase (CPEP mutase), oxaloacetate hydrolase (OAH), isocitrate lyase (ICL), 2-methylisocitrate lyase (MICL), and ketopantoate hydroxymethyltransferase (KPHMT).
Probab=22.32 E-value=4.4e+02 Score=22.96 Aligned_cols=61 Identities=18% Similarity=0.171 Sum_probs=40.6
Q ss_pred HHHHHHHhHHHHHhCCCEEEEEcCCCHHHHHHHHHHcCCCCc-----eeecCC-hHHHHHcCCcccc
Q 027527 115 RADYLAAKKDVMDASGVALVLIGPGSVEQARTFSEQTKFKGE-----VYADPN-HSSYEALSFVSGV 175 (222)
Q Consensus 115 el~~L~~~~~~l~~~gv~lvaIs~~s~~~i~~f~~~~~~pfp-----il~Dpd-~~lyk~lGl~~~~ 175 (222)
.+.++-+....+++.|...|.+-.-+.+.++++.++..+|.- -.+|-. ..++..+|+..+.
T Consensus 154 ~~~~ai~Ra~ay~~AGAd~i~~e~~~~e~~~~i~~~~~~P~~~~gag~~~dgq~lv~~d~lg~~~~~ 220 (240)
T cd06556 154 AGEQLIADALAYAPAGADLIVMECVPVELAKQITEALAIPLAGIGAGSGTDGQFLVLADAFGITGGH 220 (240)
T ss_pred HHHHHHHHHHHHHHcCCCEEEEcCCCHHHHHHHHHhCCCCEEEEecCcCCCceEEeHHhhhcccCCC
Confidence 344555556678899999888866688999999998666532 122322 3457777876553
No 371
>PRK01122 potassium-transporting ATPase subunit B; Provisional
Probab=22.31 E-value=1.7e+02 Score=29.69 Aligned_cols=36 Identities=11% Similarity=0.173 Sum_probs=23.4
Q ss_pred HHHhHHHHHhCCCEEEEEcCCCHHHHHHHHHHcCCC
Q 027527 119 LAAKKDVMDASGVALVLIGPGSVEQARTFSEQTKFK 154 (222)
Q Consensus 119 L~~~~~~l~~~gv~lvaIs~~s~~~i~~f~~~~~~p 154 (222)
..+..+++++.|++++.|+-|++..++..+++.|++
T Consensus 450 ~~eai~~Lr~~GI~vvMiTGDn~~TA~aIA~elGId 485 (679)
T PRK01122 450 IKERFAELRKMGIKTVMITGDNPLTAAAIAAEAGVD 485 (679)
T ss_pred HHHHHHHHHHCCCeEEEECCCCHHHHHHHHHHcCCc
Confidence 334445566677777777777777777777776664
No 372
>PRK10530 pyridoxal phosphate (PLP) phosphatase; Provisional
Probab=22.30 E-value=1.9e+02 Score=24.49 Aligned_cols=47 Identities=6% Similarity=0.055 Sum_probs=31.9
Q ss_pred HHhHHHHHhCCCEEEEEcCCCHHHHHHHHHHcCCCCceeecCChHHH
Q 027527 120 AAKKDVMDASGVALVLIGPGSVEQARTFSEQTKFKGEVYADPNHSSY 166 (222)
Q Consensus 120 ~~~~~~l~~~gv~lvaIs~~s~~~i~~f~~~~~~pfpil~Dpd~~ly 166 (222)
.+...+++++|+.++..+-=....+..+.++.++..++++.....+|
T Consensus 26 ~~ai~~~~~~G~~~~iaTGR~~~~~~~~~~~l~~~~~~I~~NGa~i~ 72 (272)
T PRK10530 26 LEALARAREAGYKVIIVTGRHHVAIHPFYQALALDTPAICCNGTYLY 72 (272)
T ss_pred HHHHHHHHHCCCEEEEEcCCChHHHHHHHHhcCCCCCEEEcCCcEEE
Confidence 34556678899987766666677888898988887655444433333
No 373
>PRK07283 hypothetical protein; Provisional
Probab=22.29 E-value=2.6e+02 Score=20.73 Aligned_cols=52 Identities=10% Similarity=-0.010 Sum_probs=34.7
Q ss_pred HHHHHhCCCEEEEEcCCCHHHHH----HHHHHcCCCCceeecCChHHHHHcCCcccc
Q 027527 123 KDVMDASGVALVLIGPGSVEQAR----TFSEQTKFKGEVYADPNHSSYEALSFVSGV 175 (222)
Q Consensus 123 ~~~l~~~gv~lvaIs~~s~~~i~----~f~~~~~~pfpil~Dpd~~lyk~lGl~~~~ 175 (222)
.+.++...+.+|.+..|..+..+ ..++.+++|+-.+ +...++-+++|-.+..
T Consensus 27 ~~aik~gk~~lVi~A~Das~~~~kk~~~~~~~~~Vp~~~~-~t~~eLG~a~Gk~~~v 82 (98)
T PRK07283 27 VKAIQSGQAKLVFLANDAGPNLTKKVTDKSNYYQVEVSTV-FSTLELSAAVGKPRKV 82 (98)
T ss_pred HHHHHcCCccEEEEeCCCCHHHHHHHHHHHHHcCCCEEEe-CCHHHHHHHhCCCceE
Confidence 44555566888888888554333 5666777876433 4667899999975544
No 374
>PRK14010 potassium-transporting ATPase subunit B; Provisional
Probab=22.18 E-value=1.8e+02 Score=29.51 Aligned_cols=37 Identities=14% Similarity=0.136 Sum_probs=27.8
Q ss_pred HHHHhHHHHHhCCCEEEEEcCCCHHHHHHHHHHcCCC
Q 027527 118 YLAAKKDVMDASGVALVLIGPGSVEQARTFSEQTKFK 154 (222)
Q Consensus 118 ~L~~~~~~l~~~gv~lvaIs~~s~~~i~~f~~~~~~p 154 (222)
+..+..+++++.|++++.|+-|++..++..+++.|++
T Consensus 445 ~a~e~I~~Lr~~GI~vvMiTGDn~~TA~aIA~elGI~ 481 (673)
T PRK14010 445 GLVERFRELREMGIETVMCTGDNELTAATIAKEAGVD 481 (673)
T ss_pred HHHHHHHHHHHCCCeEEEECCCCHHHHHHHHHHcCCc
Confidence 3444556677788888888888888888888888875
No 375
>KOG0084 consensus GTPase Rab1/YPT1, small G protein superfamily, and related GTP-binding proteins [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=22.04 E-value=3.9e+02 Score=23.09 Aligned_cols=73 Identities=15% Similarity=0.329 Sum_probs=42.6
Q ss_pred CcEEecCCCC----eEeCCCccCCCeEEEEEEcCCCChhHHHHHHHHHHhHHHHH---hCCCEEEEEcCC---------C
Q 027527 77 TVKVYDVNGN----AIPISDLWKDRKAVVAFARHFGCVLCRKRADYLAAKKDVMD---ASGVALVLIGPG---------S 140 (222)
Q Consensus 77 df~L~D~~G~----~v~Lsdl~~~~~vvVvF~R~~~Cp~C~~el~~L~~~~~~l~---~~gv~lvaIs~~---------s 140 (222)
-+++-|..|| ++.. +++++--.+|+.| ..-|++-...+.+...+++ ..+|..+.|+.- +
T Consensus 59 KlQIWDTAGQERFrtit~-syYR~ahGii~vy----DiT~~~SF~~v~~Wi~Ei~~~~~~~v~~lLVGNK~Dl~~~~~v~ 133 (205)
T KOG0084|consen 59 KLQIWDTAGQERFRTITS-SYYRGAHGIIFVY----DITKQESFNNVKRWIQEIDRYASENVPKLLVGNKCDLTEKRVVS 133 (205)
T ss_pred EEEeeeccccHHHhhhhH-hhccCCCeEEEEE----EcccHHHhhhHHHHHHHhhhhccCCCCeEEEeeccccHhheecC
Confidence 3455566666 4433 3333433333333 3445666666666555554 456677777653 3
Q ss_pred HHHHHHHHHHcCCC
Q 027527 141 VEQARTFSEQTKFK 154 (222)
Q Consensus 141 ~~~i~~f~~~~~~p 154 (222)
.+++++|+.++++|
T Consensus 134 ~~~a~~fa~~~~~~ 147 (205)
T KOG0084|consen 134 TEEAQEFADELGIP 147 (205)
T ss_pred HHHHHHHHHhcCCc
Confidence 46788899888888
No 376
>TIGR02886 spore_II_AA anti-sigma F factor antagonist. The anti-sigma F factor antagonist, also called stage II sporulation protein AA, is a protein universal among endospore-forming bacteria, all of which belong to the Firmcutes
Probab=21.99 E-value=2.3e+02 Score=20.42 Aligned_cols=37 Identities=5% Similarity=0.121 Sum_probs=22.2
Q ss_pred HHHHHHhHHHHHhCCCEEEEEcCCCHHHHHHHHHHcCCC
Q 027527 116 ADYLAAKKDVMDASGVALVLIGPGSVEQARTFSEQTKFK 154 (222)
Q Consensus 116 l~~L~~~~~~l~~~gv~lvaIs~~s~~~i~~f~~~~~~p 154 (222)
+..|.+...++++.|.+++.++... .+++..+..++.
T Consensus 57 i~~L~~~~~~~~~~g~~l~l~~~~~--~v~~~l~~~gl~ 93 (106)
T TIGR02886 57 LGVILGRYKKIKNEGGEVIVCNVSP--AVKRLFELSGLF 93 (106)
T ss_pred HHHHHHHHHHHHHcCCEEEEEeCCH--HHHHHHHHhCCc
Confidence 3456666667777777777666553 444444555554
No 377
>TIGR01486 HAD-SF-IIB-MPGP mannosyl-3-phosphoglycerate phosphatase family. This small group of proteins is a member of the IIB subfamily (TIGR01484) of the Haloacid Dehalogenase (HAD) superfamily of aspartate-nucleophile hydrolases. Several members of this family from thermophiles (and from Dehalococcoides ethenogenes) are now known to act as mannosyl-3-phosphoglycerate (MPG) phosphatase. In these cases, the enzyme acts after MPG synthase to make the compatible solute mannosylglycerate. We propose that other mesophilic members of this family do not act as mannosyl-3-phosphoglycerate phosphatase. A member of this family is found in Escherichia coli, which appears to lack MPG synthase. Mannosylglycerate is imported in E. coli by phosphoenolpyruvate-dependent transporter (PubMed:14645248), but it appears the phosphorylation is not on the glycerate moiety, that the phosphorylated import is degraded by an alpha-mannosidase from an adjacent gene, and that E. coli would have no pathway to obta
Probab=21.89 E-value=1.6e+02 Score=25.13 Aligned_cols=48 Identities=4% Similarity=0.151 Sum_probs=35.5
Q ss_pred HHhHHHHHhCCCEEEEEcCCCHHHHHHHHHHcCCCCceeecCChHHHH
Q 027527 120 AAKKDVMDASGVALVLIGPGSVEQARTFSEQTKFKGEVYADPNHSSYE 167 (222)
Q Consensus 120 ~~~~~~l~~~gv~lvaIs~~s~~~i~~f~~~~~~pfpil~Dpd~~lyk 167 (222)
.+...++++.|+.++.++--+...+.++.++.+++.++++.....+|.
T Consensus 22 ~~~i~~l~~~g~~~~~~TgR~~~~~~~~~~~~~~~~~~I~~NGa~i~~ 69 (256)
T TIGR01486 22 KEVLERLQELGIPVIPCTSKTAAEVEYLRKELGLEDPFIVENGGAIYG 69 (256)
T ss_pred HHHHHHHHHCCCeEEEEcCCCHHHHHHHHHHcCCCCcEEEcCCeEEEe
Confidence 445556678899999888778889999999998875666655555544
No 378
>COG1465 Predicted alternative 3-dehydroquinate synthase [Amino acid transport and metabolism]
Probab=21.80 E-value=98 Score=28.50 Aligned_cols=35 Identities=14% Similarity=0.316 Sum_probs=28.0
Q ss_pred ccccCcCCCcEEecCCCCeEeCCCccCCCeEEEEE
Q 027527 69 EDTKNLLDTVKVYDVNGNAIPISDLWKDRKAVVAF 103 (222)
Q Consensus 69 ~~~g~~apdf~L~D~~G~~v~Lsdl~~~~~vvVvF 103 (222)
..+.+.+..+.|...+|++++..+|-.+..+++.+
T Consensus 324 ~tiLQNAETIkLv~~dG~pvSV~eLk~GD~vlv~~ 358 (376)
T COG1465 324 STILQNAETIKLVNPDGEPVSVAELKPGDEVLVYL 358 (376)
T ss_pred EEEeccceeEEEEcCCCcEeeeEecCCCCEEEEEe
Confidence 45677788999999999999999987666655544
No 379
>PRK15126 thiamin pyrimidine pyrophosphate hydrolase; Provisional
Probab=21.78 E-value=2e+02 Score=24.64 Aligned_cols=47 Identities=4% Similarity=0.005 Sum_probs=33.0
Q ss_pred HHhHHHHHhCCCEEEEEcCCCHHHHHHHHHHcCCCCceeecCChHHH
Q 027527 120 AAKKDVMDASGVALVLIGPGSVEQARTFSEQTKFKGEVYADPNHSSY 166 (222)
Q Consensus 120 ~~~~~~l~~~gv~lvaIs~~s~~~i~~f~~~~~~pfpil~Dpd~~ly 166 (222)
.+...+++++|+.++..+-=+...++++.++.+++.++++.....+|
T Consensus 25 ~~ai~~l~~~G~~~~iaTGR~~~~~~~~~~~l~~~~~~I~~NGa~I~ 71 (272)
T PRK15126 25 LSTLARLRERDITLTFATGRHVLEMQHILGALSLDAYLITGNGTRVH 71 (272)
T ss_pred HHHHHHHHHCCCEEEEECCCCHHHHHHHHHHcCCCCcEEecCCcEEE
Confidence 34455567899988877777778899999998887665554443333
No 380
>PF11775 CobT_C: Cobalamin biosynthesis protein CobT VWA domain
Probab=21.76 E-value=2.6e+02 Score=24.39 Aligned_cols=59 Identities=20% Similarity=0.247 Sum_probs=38.9
Q ss_pred ecCCCCeEe-----CCCccCCCeEEEEEEcCCCChh-------HH-HHH-HHHHHhHHHHHh-CCCEEEEEcCCCH
Q 027527 81 YDVNGNAIP-----ISDLWKDRKAVVAFARHFGCVL-------CR-KRA-DYLAAKKDVMDA-SGVALVLIGPGSV 141 (222)
Q Consensus 81 ~D~~G~~v~-----Lsdl~~~~~vvVvF~R~~~Cp~-------C~-~el-~~L~~~~~~l~~-~gv~lvaIs~~s~ 141 (222)
.+.||+.+. |..--+++++++|+ ..+||. .. .|+ ..|++..++++. .+|++++||.+..
T Consensus 115 eniDGeAl~~a~~rL~~r~e~rkiLiVi--SDG~P~d~st~~~n~~~~L~~HLr~vi~~ie~~~~Vel~aiGIg~D 188 (219)
T PF11775_consen 115 ENIDGEALRWAAERLLARPEQRKILIVI--SDGAPADDSTLSANDGDYLDAHLRQVIAEIETRSDVELIAIGIGHD 188 (219)
T ss_pred cCCcHHHHHHHHHHHHcCCccceEEEEE--eCCCcCcccccccCChHHHHHHHHHHHHHHhccCCcEEEEEEcCCC
Confidence 457888765 22222456766666 678887 11 133 367777788875 4799999999864
No 381
>PF07476 MAAL_C: Methylaspartate ammonia-lyase C-terminus; InterPro: IPR022662 Methylaspartate ammonia-lyase 4.3.1.2 from EC catalyses the second step of fermentation of glutamate. It is a homodimer. This domain represents the C-terminal region of methylaspartate ammonia-lyase and contains a TIM barrel fold similar to the PF01188 from PFAM. This domain represents the catalytic domain and contains a metal binding site []. ; PDB: 1KKO_B 1KKR_A 3ZVI_A 1KD0_B 1KCZ_B 3ZVH_A.
Probab=21.48 E-value=2.3e+02 Score=25.05 Aligned_cols=43 Identities=16% Similarity=0.353 Sum_probs=28.0
Q ss_pred HHHHHHHHHhHHHHHhCCCEEEEEc---CCCHHHHHHHHHHcCCCC
Q 027527 113 RKRADYLAAKKDVMDASGVALVLIG---PGSVEQARTFSEQTKFKG 155 (222)
Q Consensus 113 ~~el~~L~~~~~~l~~~gv~lvaIs---~~s~~~i~~f~~~~~~pf 155 (222)
.+++..|+++.+.++++|+.+-.|. +.+.+.++.|.......+
T Consensus 119 ~~QI~~l~~Lr~~L~~~g~~v~iVADEWCNT~eDI~~F~da~A~dm 164 (248)
T PF07476_consen 119 EAQIEALAELREELDRRGINVEIVADEWCNTLEDIREFADAKAADM 164 (248)
T ss_dssp HHHHHHHHHHHHHHHHCT--EEEEE-TT--SHHHHHHHHHTT-SSE
T ss_pred HHHHHHHHHHHHHHHhcCCCCeEEeehhcCCHHHHHHHHhcCCcCE
Confidence 4567788888888888887766663 457788888887755543
No 382
>TIGR01647 ATPase-IIIA_H plasma-membrane proton-efflux P-type ATPase. This model describes the plasma membrane proton efflux P-type ATPase found in plants, fungi, protozoa, slime molds and archaea. The best studied representative is from yeast.
Probab=21.45 E-value=1.9e+02 Score=29.43 Aligned_cols=38 Identities=8% Similarity=0.131 Sum_probs=32.1
Q ss_pred HHhHHHHHhCCCEEEEEcCCCHHHHHHHHHHcCCCCce
Q 027527 120 AAKKDVMDASGVALVLIGPGSVEQARTFSEQTKFKGEV 157 (222)
Q Consensus 120 ~~~~~~l~~~gv~lvaIs~~s~~~i~~f~~~~~~pfpi 157 (222)
.+..+++++.|++++.|+-|++..++..+++.|+..++
T Consensus 448 ~~aI~~l~~aGI~v~miTGD~~~tA~~IA~~lGI~~~~ 485 (755)
T TIGR01647 448 KETIERARHLGVEVKMVTGDHLAIAKETARRLGLGTNI 485 (755)
T ss_pred HHHHHHHHHCCCeEEEECCCCHHHHHHHHHHcCCCCCC
Confidence 34456788999999999999999999999999997543
No 383
>cd01137 PsaA Metal binding protein PsaA. These proteins have been shown to function as initial receptors in ABC transport of Mn2+ and as surface adhesins in some eubacterial species. They belong to the TroA superfamily of periplasmic metal binding proteins that share a distinct fold and ligand binding mechanism. A typical TroA protein is comprised of two globular subdomains connected by a single helix and can bind the metal ion in the cleft between these domains. In addition, these proteins sometimes have a low complexity region containing a metal-binding histidine-rich motif (repetitive HDH sequence).
Probab=21.18 E-value=1.9e+02 Score=25.50 Aligned_cols=38 Identities=13% Similarity=0.143 Sum_probs=20.1
Q ss_pred HHHHHhHHHHHhCCCEEEEEcCC-CHHHHHHHHHHcCCC
Q 027527 117 DYLAAKKDVMDASGVALVLIGPG-SVEQARTFSEQTKFK 154 (222)
Q Consensus 117 ~~L~~~~~~l~~~gv~lvaIs~~-s~~~i~~f~~~~~~p 154 (222)
.+|+++.+.+++.++++|.+-.. +...++..+++++.+
T Consensus 213 ~~l~~l~~~ik~~~v~~if~e~~~~~~~~~~ia~~~gv~ 251 (287)
T cd01137 213 KQVATLIEQVKKEKVPAVFVESTVNDRLMKQVAKETGAK 251 (287)
T ss_pred HHHHHHHHHHHHhCCCEEEEeCCCChHHHHHHHHHhCCc
Confidence 34444555555666666655444 234455555555554
No 384
>PF02844 GARS_N: Phosphoribosylglycinamide synthetase, N domain; InterPro: IPR020562 Phosphoribosylglycinamide synthetase (6.3.4.13 from EC) (GARS) (phosphoribosylamine glycine ligase) [] catalyses the second step in the de novo biosynthesis of purine. The reaction catalysed by phosphoribosylglycinamide synthetase is the ATP-dependent addition of 5-phosphoribosylamine to glycine to form 5'phosphoribosylglycinamide: ATP + 5-phosphoribosylamine + glycine = ADP + Pi + 5'-phosphoribosylglycinamide In bacteria, GARS is a monofunctional enzyme (encoded by the purD gene). In yeast, GARS is part of a bifunctional enzyme (encoded by the ADE5/7 gene) in conjunction with phosphoribosylformylglycinamidine cyclo-ligase (AIRS) (IPR000728 from INTERPRO). In higher eukaryotes, GARS is part of a trifunctional enzyme in conjunction with AIRS (IPR000728 from INTERPRO) and with phosphoribosylglycinamide formyltransferase (GART) (), forming GARS-AIRS-GART. This entry represents the N-domain, which is related to the N-terminal domain of biotin carboxylase/carbamoyl phosphate synthetase (IPR005481 from INTERPRO).; GO: 0004637 phosphoribosylamine-glycine ligase activity, 0009113 purine base biosynthetic process; PDB: 3MJF_A 2XD4_A 2XCL_A 2IP4_A 2YW2_B 2YYA_A 3LP8_A 1VKZ_A 2YS6_A 2YRX_A ....
Probab=20.99 E-value=76 Score=24.14 Aligned_cols=34 Identities=15% Similarity=0.223 Sum_probs=17.4
Q ss_pred HhHHHHHhCCCEEEEEcCCCH--HHHHHHHHHcCCC
Q 027527 121 AKKDVMDASGVALVLIGPGSV--EQARTFSEQTKFK 154 (222)
Q Consensus 121 ~~~~~l~~~gv~lvaIs~~s~--~~i~~f~~~~~~p 154 (222)
++.+-.++.++.+++|+++.+ +.+....++.+++
T Consensus 53 ~l~~~a~~~~idlvvvGPE~pL~~Gl~D~l~~~gi~ 88 (100)
T PF02844_consen 53 ELADFAKENKIDLVVVGPEAPLVAGLADALRAAGIP 88 (100)
T ss_dssp HHHHHHHHTTESEEEESSHHHHHTTHHHHHHHTT-C
T ss_pred HHHHHHHHcCCCEEEECChHHHHHHHHHHHHHCCCc
Confidence 333334456666666666665 3444444444543
No 385
>cd03052 GST_N_GDAP1 GST_N family, Ganglioside-induced differentiation-associated protein 1 (GDAP1) subfamily; GDAP1 was originally identified as a highly expressed gene at the differentiated stage of GD3 synthase-transfected cells. More recently, mutations in GDAP1 have been reported to cause both axonal and demyelinating autosomal-recessive Charcot-Marie-Tooth (CMT) type 4A neuropathy. CMT is characterized by slow and progressive weakness and atrophy of muscles. Sequence analysis of GDAP1 shows similarities and differences with GSTs; it appears to contain both N-terminal TRX-fold and C-terminal alpha helical domains of GSTs, however, it also contains additional C-terminal transmembrane domains unlike GSTs. GDAP1 is mainly expressed in neuronal cells and is localized in the mitochondria through its transmembrane domains. It does not exhibit GST activity using standard substrates.
Probab=20.90 E-value=1.3e+02 Score=20.56 Aligned_cols=60 Identities=10% Similarity=-0.074 Sum_probs=32.8
Q ss_pred EEEcCCCChhHHHHHHHHHHhHHHHHhCCCEEEEEcCCCHH-HHHHHHHHcCC-CCceeecCChHHH
Q 027527 102 AFARHFGCVLCRKRADYLAAKKDVMDASGVALVLIGPGSVE-QARTFSEQTKF-KGEVYADPNHSSY 166 (222)
Q Consensus 102 vF~R~~~Cp~C~~el~~L~~~~~~l~~~gv~lvaIs~~s~~-~i~~f~~~~~~-pfpil~Dpd~~ly 166 (222)
.+|....|+.|++-...|.+. ....+++.|.....+ ....|.+-... ..|++.|.+..++
T Consensus 2 ~ly~~~~s~~s~rv~~~L~e~-----gl~~e~~~v~~~~~~~~~~~~~~inP~g~vP~L~~~g~~l~ 63 (73)
T cd03052 2 VLYHWTQSFSSQKVRLVIAEK-----GLRCEEYDVSLPLSEHNEPWFMRLNPTGEVPVLIHGDNIIC 63 (73)
T ss_pred EEecCCCCccHHHHHHHHHHc-----CCCCEEEEecCCcCccCCHHHHHhCcCCCCCEEEECCEEEE
Confidence 467778999997654433332 122455666543322 23346655444 3688887654433
No 386
>PF04007 DUF354: Protein of unknown function (DUF354); InterPro: IPR007152 Members of this family are around 350 amino acids in length. They are found in archaea and some bacteria and have no known function.
Probab=20.82 E-value=2.7e+02 Score=25.61 Aligned_cols=50 Identities=6% Similarity=0.121 Sum_probs=37.4
Q ss_pred HHHHHHHhHHHHHhCCCEEEEEcCCCHHHHHHHHHHcCCCCceeecCChHH
Q 027527 115 RADYLAAKKDVMDASGVALVLIGPGSVEQARTFSEQTKFKGEVYADPNHSS 165 (222)
Q Consensus 115 el~~L~~~~~~l~~~gv~lvaIs~~s~~~i~~f~~~~~~pfpil~Dpd~~l 165 (222)
++.-++....+|++.|.+|+....+. +.+.+..+.+++++..+-.....+
T Consensus 12 hvhfFk~~I~eL~~~GheV~it~R~~-~~~~~LL~~yg~~y~~iG~~g~~~ 61 (335)
T PF04007_consen 12 HVHFFKNIIRELEKRGHEVLITARDK-DETEELLDLYGIDYIVIGKHGDSL 61 (335)
T ss_pred HHHHHHHHHHHHHhCCCEEEEEEecc-chHHHHHHHcCCCeEEEcCCCCCH
Confidence 67777888889999999988887764 577778888888887665543333
No 387
>PF12689 Acid_PPase: Acid Phosphatase; InterPro: IPR010036 This entry represents two closely related clades of sequences from eukaryotes and archaea. The mouse enzyme has been characterised as a phosphatase and has been positively identified as a member of the haloacid dehalogenase (HAD) superfamily by site-directed mutagenesis of the active site residues [, ].; GO: 0016791 phosphatase activity; PDB: 1U7P_A 1U7O_A 2WM8_A.
Probab=20.77 E-value=2.7e+02 Score=22.97 Aligned_cols=14 Identities=21% Similarity=0.377 Sum_probs=6.2
Q ss_pred EEecCCCCeEeCCC
Q 027527 79 KVYDVNGNAIPISD 92 (222)
Q Consensus 79 ~L~D~~G~~v~Lsd 92 (222)
.+.|..|+.++|-.
T Consensus 35 ~v~D~~g~~v~lyp 48 (169)
T PF12689_consen 35 VVVDSRGEEVSLYP 48 (169)
T ss_dssp -EEETT--EE---T
T ss_pred EEEeCCCCEEEeCc
Confidence 78888888887754
No 388
>COG1433 Uncharacterized conserved protein [Function unknown]
Probab=20.74 E-value=3.8e+02 Score=21.04 Aligned_cols=22 Identities=14% Similarity=0.075 Sum_probs=14.4
Q ss_pred ccCcCCCcEEecCCCCeEeCCC
Q 027527 71 TKNLLDTVKVYDVNGNAIPISD 92 (222)
Q Consensus 71 ~g~~apdf~L~D~~G~~v~Lsd 92 (222)
---++|.|.+.|.++..+..-+
T Consensus 19 hFgrap~F~Ivd~e~g~i~~ve 40 (121)
T COG1433 19 HFGRAPYFTIVDVEDGEIKNVE 40 (121)
T ss_pred CccCCceEEEEEecCCcEEEEE
Confidence 3456899999997644444433
No 389
>cd05014 SIS_Kpsf KpsF-like protein. KpsF is an arabinose-5-phosphate isomerase which contains SIS (Sugar ISomerase) domains. SIS domains are found in many phosphosugar isomerases and phosphosugar binding proteins. KpsF catalyzes the reversible reaction of ribulose 5-phosphate to arabinose 5-phosphate. This is the second step in the CMP-Kdo biosynthesis pathway.
Probab=20.67 E-value=1.6e+02 Score=21.98 Aligned_cols=44 Identities=18% Similarity=0.175 Sum_probs=28.8
Q ss_pred EEEEEEcCCCChhHHHHHHHHHHhHHHHHhCCCEEEEEcCCCHHHHHHHH
Q 027527 99 AVVAFARHFGCVLCRKRADYLAAKKDVMDASGVALVLIGPGSVEQARTFS 148 (222)
Q Consensus 99 vvVvF~R~~~Cp~C~~el~~L~~~~~~l~~~gv~lvaIs~~s~~~i~~f~ 148 (222)
-+++++-..+ +-+++.+..+..+++|+++|+|.......+.+++
T Consensus 49 d~vi~iS~sG------~t~~~~~~~~~a~~~g~~vi~iT~~~~s~la~~a 92 (128)
T cd05014 49 DVVIAISNSG------ETDELLNLLPHLKRRGAPIIAITGNPNSTLAKLS 92 (128)
T ss_pred CEEEEEeCCC------CCHHHHHHHHHHHHCCCeEEEEeCCCCCchhhhC
Confidence 3455554554 2345555666677889999999998766666653
No 390
>TIGR03677 rpl7ae 50S ribosomal protein L7Ae. Multifunctional RNA-binding protein that recognizes the K-turn motif in ribosomal RNA, box H/ACA, box C/D and box C'/D' sRNAs. Interacts with protein L15e.
Probab=20.65 E-value=3.7e+02 Score=20.63 Aligned_cols=49 Identities=14% Similarity=0.141 Sum_probs=36.2
Q ss_pred HHHHhCCCEEEEEcCCC-H----HHHHHHHHHcCCCCceeecCChHHHHHcCCcc
Q 027527 124 DVMDASGVALVLIGPGS-V----EQARTFSEQTKFKGEVYADPNHSSYEALSFVS 173 (222)
Q Consensus 124 ~~l~~~gv~lvaIs~~s-~----~~i~~f~~~~~~pfpil~Dpd~~lyk~lGl~~ 173 (222)
..++..-+.+|.|..|- + +.+..+|+++++|+ ++.....++-++.|...
T Consensus 36 kaikkgka~LVilA~D~s~~~~~~~i~~lc~~~~Ip~-~~~~sk~eLG~a~Gk~~ 89 (117)
T TIGR03677 36 KAVERGIAKLVVIAEDVEPPEIVAHLPALCEEKGIPY-VYVKKKEDLGAAAGLEV 89 (117)
T ss_pred HHHHcCCccEEEEeCCCCcHHHHHHHHHHHHHcCCCE-EEeCCHHHHHHHhCCCC
Confidence 44555558888887774 2 34566799999995 67778899999999853
No 391
>TIGR01484 HAD-SF-IIB HAD-superfamily hydrolase, subfamily IIB. The IIB subfamily consists of Trehalose-6-phosphatase (TIGR00685), plant and cyanobacterial Sucrose-phosphatase and a closely related group of bacterial and archaeal sequences, eukaryotic phosphomannomutase (pfam03332), a large subfamily ("Cof-like hydrolases", TIGR00099) containing many closely related bacterial sequences, a hypothetical equivalog containing the E. coli YedP protein, as well as two small clusters containing sequences whose relationship to the other groups is unclear.
Probab=20.55 E-value=2.2e+02 Score=23.02 Aligned_cols=47 Identities=15% Similarity=0.167 Sum_probs=31.7
Q ss_pred HHHHHhHHHHHhCCCEEEEEcCCCHHHHHHHHHHcCCCCceeecCChHH
Q 027527 117 DYLAAKKDVMDASGVALVLIGPGSVEQARTFSEQTKFKGEVYADPNHSS 165 (222)
Q Consensus 117 ~~L~~~~~~l~~~gv~lvaIs~~s~~~i~~f~~~~~~pfpil~Dpd~~l 165 (222)
+.+.+...++.+.|+.++.++--+...++++.++ ++.+++++....+
T Consensus 20 ~~~~~~l~~l~~~g~~~~i~TGR~~~~~~~~~~~--~~~~~i~~nGa~i 66 (204)
T TIGR01484 20 PETIEALERLREAGVKVVLVTGRSLAEIKELLKQ--LPLPLIAENGALI 66 (204)
T ss_pred HHHHHHHHHHHHCCCEEEEECCCCHHHHHHHHHh--CCCCEEECCCcEE
Confidence 4555667778888888777777777888888876 3444555444433
No 392
>TIGR03436 acidobact_VWFA VWFA-related Acidobacterial domain. Members of this family are bacterial domains that include a region related to the von Willebrand factor type A (VWFA) domain (pfam00092). These domains are restricted to, and have undergone a large paralogous family expansion in, the Acidobacteria, including Solibacter usitatus and Acidobacterium capsulatum ATCC 51196.
Probab=20.49 E-value=4.3e+02 Score=22.95 Aligned_cols=37 Identities=22% Similarity=0.197 Sum_probs=25.3
Q ss_pred HHHHhHHHHHhCCCEEEEEcCCC----------------HHHHHHHHHHcCCC
Q 027527 118 YLAAKKDVMDASGVALVLIGPGS----------------VEQARTFSEQTKFK 154 (222)
Q Consensus 118 ~L~~~~~~l~~~gv~lvaIs~~s----------------~~~i~~f~~~~~~p 154 (222)
.+.+..+.+.+.++.|..|+.++ .+.++++++.+|=.
T Consensus 182 ~~~~~~~~~~~~~v~vy~I~~~~~~~~~~~~~~~~~~~~~~~L~~iA~~TGG~ 234 (296)
T TIGR03436 182 TLERAIDAAQRADVAIYSIDARGLRAPDLGAGAKAGLGGPEALERLAEETGGR 234 (296)
T ss_pred HHHHHHHHHHHcCCEEEEeccCccccCCcccccccCCCcHHHHHHHHHHhCCe
Confidence 45566666778899999988752 35666666666644
No 393
>cd03049 GST_N_3 GST_N family, unknown subfamily 3; composed of uncharacterized bacterial proteins with similarity to GSTs. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains.
Probab=20.48 E-value=2.3e+02 Score=18.82 Aligned_cols=54 Identities=17% Similarity=0.086 Sum_probs=27.5
Q ss_pred EEEcCCCChhHHHHHHHHHHhHHHHHhCC--CEEEEEcCCCHHHHHHHHHHcCCC-CceeecCC
Q 027527 102 AFARHFGCVLCRKRADYLAAKKDVMDASG--VALVLIGPGSVEQARTFSEQTKFK-GEVYADPN 162 (222)
Q Consensus 102 vF~R~~~Cp~C~~el~~L~~~~~~l~~~g--v~lvaIs~~s~~~i~~f~~~~~~p-fpil~Dpd 162 (222)
.+|....||+|++-...|... ..| .+++.|.... .-..|.+..... .|++.+++
T Consensus 2 ~Ly~~~~s~~~~~~~~~l~~~-----~~~i~~~~~~~~~~~--~~~~~~~~~p~~~vP~l~~~~ 58 (73)
T cd03049 2 KLLYSPTSPYVRKVRVAAHET-----GLGDDVELVLVNPWS--DDESLLAVNPLGKIPALVLDD 58 (73)
T ss_pred EEecCCCCcHHHHHHHHHHHh-----CCCCCcEEEEcCccc--CChHHHHhCCCCCCCEEEECC
Confidence 356678899999755555441 122 3444443321 223444443332 57776433
No 394
>PRK03669 mannosyl-3-phosphoglycerate phosphatase; Reviewed
Probab=20.47 E-value=2e+02 Score=24.77 Aligned_cols=46 Identities=7% Similarity=0.057 Sum_probs=34.4
Q ss_pred HhHHHHHhCCCEEEEEcCCCHHHHHHHHHHcCCC-CceeecCChHHH
Q 027527 121 AKKDVMDASGVALVLIGPGSVEQARTFSEQTKFK-GEVYADPNHSSY 166 (222)
Q Consensus 121 ~~~~~l~~~gv~lvaIs~~s~~~i~~f~~~~~~p-fpil~Dpd~~ly 166 (222)
+...+++++|+.++..+--+...++++.++.+++ .++++.....+|
T Consensus 31 ~ai~~l~~~Gi~~viaTGR~~~~i~~~~~~l~~~~~~~I~~NGa~I~ 77 (271)
T PRK03669 31 PWLTRLREAQVPVILCSSKTAAEMLPLQQTLGLQGLPLIAENGAVIQ 77 (271)
T ss_pred HHHHHHHHcCCeEEEEcCCCHHHHHHHHHHhCCCCCcEEEeCCCEEE
Confidence 4456677899998877777788999999999885 456665555555
No 395
>PF04800 ETC_C1_NDUFA4: ETC complex I subunit conserved region; InterPro: IPR006885 This entry represents prokaryotic NADH-ubiquinone oxidoreductase subunits (1.6.5.3 from EC, 1.6.99.3 from EC) from complex I of the electron transport chain initially identified in Neurospora crassa as a 21 kDa protein [].; GO: 0016651 oxidoreductase activity, acting on NADH or NADPH, 0022900 electron transport chain, 0005743 mitochondrial inner membrane; PDB: 2JYA_A 2LJU_A.
Probab=20.45 E-value=77 Score=24.22 Aligned_cols=30 Identities=23% Similarity=0.224 Sum_probs=21.8
Q ss_pred EEEcCCCHHHHHHHHHHcCCCCceeecCCh
Q 027527 134 VLIGPGSVEQARTFSEQTKFKGEVYADPNH 163 (222)
Q Consensus 134 vaIs~~s~~~i~~f~~~~~~pfpil~Dpd~ 163 (222)
+.+.-++.|++-.||++.|++|.|.....+
T Consensus 51 v~l~F~skE~Ai~yaer~G~~Y~V~~p~~r 80 (101)
T PF04800_consen 51 VRLKFDSKEDAIAYAERNGWDYEVEEPKKR 80 (101)
T ss_dssp CEEEESSHHHHHHHHHHCT-EEEEE-STT-
T ss_pred eEeeeCCHHHHHHHHHHcCCeEEEeCCCCC
Confidence 445567889999999999999988865544
No 396
>COG1358 RPL8A Ribosomal protein HS6-type (S12/L30/L7a) [Translation, ribosomal structure and biogenesis]
Probab=20.32 E-value=3.3e+02 Score=21.15 Aligned_cols=54 Identities=19% Similarity=0.208 Sum_probs=39.3
Q ss_pred HhHHHHHhCCCEEEEEcCC-CHH----HHHHHHHHcCCCCceeecCChHHHHHcCCc-ccc
Q 027527 121 AKKDVMDASGVALVLIGPG-SVE----QARTFSEQTKFKGEVYADPNHSSYEALSFV-SGV 175 (222)
Q Consensus 121 ~~~~~l~~~gv~lvaIs~~-s~~----~i~~f~~~~~~pfpil~Dpd~~lyk~lGl~-~~~ 175 (222)
+.-..+++....+|.|..| +|. .+...|+++++|+ ++......+-++.|+. +..
T Consensus 34 e~~Kai~~g~a~LVviA~Dv~P~~~~~~l~~lc~~~~vpy-v~V~sk~~LG~a~g~~~~~v 93 (116)
T COG1358 34 EVTKAIERGKAKLVVIAEDVSPEELVKHLPALCEEKNVPY-VYVGSKKELGKAVGKEVRKV 93 (116)
T ss_pred HHHHHHHcCCCcEEEEecCCCHHHHHHHHHHHHHhcCCCE-EEeCCHHHHHHHhCCCccee
Confidence 3344566666788888877 323 4456888899998 6778889999999998 443
No 397
>PF12017 Tnp_P_element: Transposase protein; InterPro: IPR021896 Protein in this family are transposases found in insects. This region is about 230 amino acids in length and is found associated with PF05485 from PFAM.
Probab=20.31 E-value=1.9e+02 Score=25.29 Aligned_cols=38 Identities=16% Similarity=0.114 Sum_probs=27.4
Q ss_pred HHHHHHhHHHHHhCCCEEEEEcCCCHHHHHHHHHHcCC
Q 027527 116 ADYLAAKKDVMDASGVALVLIGPGSVEQARTFSEQTKF 153 (222)
Q Consensus 116 l~~L~~~~~~l~~~gv~lvaIs~~s~~~i~~f~~~~~~ 153 (222)
+..|.+...++.+.|+.||||.+|--..-.....++|+
T Consensus 195 ~~~l~~iI~~l~~~g~~VvAivsD~g~~N~~~w~~Lgi 232 (236)
T PF12017_consen 195 ADILKNIIEKLHEIGYNVVAIVSDMGSNNISLWRELGI 232 (236)
T ss_pred HHHHHHHHHHHHHCCCEEEEEECCCCcchHHHHHHcCC
Confidence 56667778899999999999999865444444444454
No 398
>PF04244 DPRP: Deoxyribodipyrimidine photo-lyase-related protein; InterPro: IPR007357 This family appears to be related to DNA photolyases.; PDB: 3ZXS_A.
Probab=20.29 E-value=2.8e+02 Score=23.93 Aligned_cols=47 Identities=13% Similarity=0.075 Sum_probs=29.4
Q ss_pred HHHHHHhHHHHHhCCCEEEEEcCCC-------HHHHHHHHHHcCCCCceeecCC
Q 027527 116 ADYLAAKKDVMDASGVALVLIGPGS-------VEQARTFSEQTKFKGEVYADPN 162 (222)
Q Consensus 116 l~~L~~~~~~l~~~gv~lvaIs~~s-------~~~i~~f~~~~~~pfpil~Dpd 162 (222)
..+++.+.++|+++|..|.-+-.++ .+.++++.+++++.--.+++|.
T Consensus 48 ~saMRhfa~~L~~~G~~V~Y~~~~~~~~~~s~~~~L~~~~~~~~~~~~~~~~P~ 101 (224)
T PF04244_consen 48 FSAMRHFADELRAKGFRVHYIELDDPENTQSFEDALARALKQHGIDRLHVMEPG 101 (224)
T ss_dssp HHHHHHHHHHHHHTT--EEEE-TT-TT--SSHHHHHHHHHHHH----EEEE--S
T ss_pred HHHHHHHHHHHHhCCCEEEEEeCCCccccccHHHHHHHHHHHcCCCEEEEECCC
Confidence 3456667889999999999998884 2678889999888766777776
No 399
>COG1490 Dtd D-Tyr-tRNAtyr deacylase [Translation, ribosomal structure and biogenesis]
Probab=20.26 E-value=95 Score=25.26 Aligned_cols=34 Identities=12% Similarity=0.240 Sum_probs=26.6
Q ss_pred CEEEEEcCCCHHHHHHHHHHcCCCCceeecCChH
Q 027527 131 VALVLIGPGSVEQARTFSEQTKFKGEVYADPNHS 164 (222)
Q Consensus 131 v~lvaIs~~s~~~i~~f~~~~~~pfpil~Dpd~~ 164 (222)
..+++|.+++.++-.++..+.=+.+.|+.|.+.+
T Consensus 28 lvLvGV~~~Dt~~~a~~l~~Ki~~lRiF~D~~gK 61 (145)
T COG1490 28 LVLVGVTHDDTEEDADYLAEKILNLRIFEDEEGK 61 (145)
T ss_pred EEEEeecCCCCHHHHHHHHHHHhceEeecCcccc
Confidence 4578899988876666666657888999998877
No 400
>PRK11869 2-oxoacid ferredoxin oxidoreductase subunit beta; Provisional
Probab=20.23 E-value=94 Score=27.88 Aligned_cols=23 Identities=13% Similarity=0.054 Sum_probs=14.6
Q ss_pred EcCCCChhHHHH--HHHHHHhHHHH
Q 027527 104 ARHFGCVLCRKR--ADYLAAKKDVM 126 (222)
Q Consensus 104 ~R~~~Cp~C~~e--l~~L~~~~~~l 126 (222)
+.+.|||.|--. +..+.+..+++
T Consensus 6 ~~~~~CpGCg~~~i~~~~~~a~~~l 30 (280)
T PRK11869 6 YDIAWCPGCGNFGIRNALMKALSEL 30 (280)
T ss_pred CCCCCCcCCCCHHHHHHHHHHHHHc
Confidence 578999999653 33444444444
No 401
>PRK09545 znuA high-affinity zinc transporter periplasmic component; Reviewed
Probab=20.17 E-value=2.3e+02 Score=25.40 Aligned_cols=38 Identities=11% Similarity=0.106 Sum_probs=24.3
Q ss_pred HHHHHhHHHHHhCCCEEEEEcCCC-HHHHHHHHHHcCCC
Q 027527 117 DYLAAKKDVMDASGVALVLIGPGS-VEQARTFSEQTKFK 154 (222)
Q Consensus 117 ~~L~~~~~~l~~~gv~lvaIs~~s-~~~i~~f~~~~~~p 154 (222)
..|.++.+.+++.++++|.+-+.. ...++...++++.+
T Consensus 239 ~~l~~l~~~ik~~~v~~If~e~~~~~~~~~~la~e~g~~ 277 (311)
T PRK09545 239 QRLHEIRTQLVEQKATCVFAEPQFRPAVIESVAKGTSVR 277 (311)
T ss_pred HHHHHHHHHHHHcCCCEEEecCCCChHHHHHHHHhcCCe
Confidence 455566666777777777776653 34556666666654
No 402
>cd00858 GlyRS_anticodon GlyRS Glycyl-anticodon binding domain. GlyRS belongs to class II aminoacyl-tRNA synthetases (aaRS). This alignment contains the anticodon binding domain, which is responsible for specificity in tRNA-binding, so that the activated amino acid is transferred to a ribose 3' OH group of the appropriate tRNA only.
Probab=20.10 E-value=3.9e+02 Score=20.10 Aligned_cols=48 Identities=10% Similarity=0.044 Sum_probs=35.1
Q ss_pred HHHHHHhHHHHHhCCCEEEE-EcCCCHHHHHHHHHHcCCCCceeecCChH
Q 027527 116 ADYLAAKKDVMDASGVALVL-IGPGSVEQARTFSEQTKFKGEVYADPNHS 164 (222)
Q Consensus 116 l~~L~~~~~~l~~~gv~lva-Is~~s~~~i~~f~~~~~~pfpil~Dpd~~ 164 (222)
.....++..++++.|+.+.. .. .+....-+++++.+++|-++..++..
T Consensus 41 ~~~a~~la~~LR~~gi~v~~d~~-~sl~kqlk~A~k~g~~~~iiiG~~e~ 89 (121)
T cd00858 41 VEIAKEISEELRELGFSVKYDDS-GSIGRRYARQDEIGTPFCVTVDFDTL 89 (121)
T ss_pred HHHHHHHHHHHHHCCCEEEEeCC-CCHHHHHHHhHhcCCCEEEEECcCch
Confidence 33444567778888988776 44 66677777888999999988876644
No 403
>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional
Probab=20.07 E-value=2.9e+02 Score=26.68 Aligned_cols=63 Identities=13% Similarity=0.062 Sum_probs=45.4
Q ss_pred CCCcEEecCCCCeEeCCCccCCCeEEEEEEcCCCChhHHHHHHHHHHhHHHHHhCCCEEEEEcCCC
Q 027527 75 LDTVKVYDVNGNAIPISDLWKDRKAVVAFARHFGCVLCRKRADYLAAKKDVMDASGVALVLIGPGS 140 (222)
Q Consensus 75 apdf~L~D~~G~~v~Lsdl~~~~~vvVvF~R~~~Cp~C~~el~~L~~~~~~l~~~gv~lvaIs~~s 140 (222)
+..+.+.=.+|+.++|.+|.+..++|| .-+.. -.|.+-+.....++.+|.+.||-||-|..+.
T Consensus 276 L~rL~v~l~~~~~v~l~~LRg~~RvvI--vAG~~-e~v~~al~~ae~~r~~L~~r~VlvVPv~~~~ 338 (453)
T PLN03098 276 LSRLPVRLSTNRIVELVQLRDITRPVI--LAGTK-ESVTLAMQKAERYRTELLKRGVLLIPVVWGE 338 (453)
T ss_pred hccceEeccCCCEEeHHHhcCcceEEE--EECCH-HHHHHHHHHhHHHHHHHHHcCcEEEEEecCC
Confidence 344444444678999999865445444 22333 6788888888889999999999999998763
Done!