BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 027528
(222 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1XRJ|A Chain A, Rapid Structure Determination Of Human Uridine-Cytidine
Kinase 2 Using A Conventional Laboratory X-Ray Source
And A Single Samarium Derivative
pdb|1XRJ|B Chain B, Rapid Structure Determination Of Human Uridine-Cytidine
Kinase 2 Using A Conventional Laboratory X-Ray Source
And A Single Samarium Derivative
Length = 261
Score = 153 bits (386), Expect = 7e-38, Method: Compositional matrix adjust.
Identities = 74/130 (56%), Positives = 95/130 (73%), Gaps = 1/130 (0%)
Query: 1 MEKLRHGQAVDIPNYDFKSYKNNVFPARRVNPSDVILLEGILVFHDSRVRELMNMKIFVD 60
++++ G+ V IP YDF S+ V P+DV+L EGIL F+ VR+L MK+FVD
Sbjct: 98 LKEITEGKTVQIPVYDFVSHSRKE-ETVTVYPADVVLFEGILAFYSQEVRDLFQMKLFVD 156
Query: 61 TDADVRLARRIRRDTVEKGRDIATVLDQYSKFVKPAFDDFILPTKKYADIIIPRGGDNHV 120
TDAD RL+RR+ RD E+GRD+ +L QY FVKPAF++F LPTKKYAD+IIPRG DN V
Sbjct: 157 TDADTRLSRRVLRDISERGRDLEQILSQYITFVKPAFEEFCLPTKKYADVIIPRGADNLV 216
Query: 121 AIDLIVQHIR 130
AI+LIVQHI+
Sbjct: 217 AINLIVQHIQ 226
>pdb|1UDW|A Chain A, Crystal Structure Of Human Uridine-cytidine Kinase 2
Complexed With A Feedback-inhibitor, Ctp
pdb|1UDW|B Chain B, Crystal Structure Of Human Uridine-cytidine Kinase 2
Complexed With A Feedback-inhibitor, Ctp
pdb|1UEI|A Chain A, Crystal Structure Of Human Uridine-Cytidine Kinase 2
Complexed With A Feedback-Inhibitor, Utp
pdb|1UEI|B Chain B, Crystal Structure Of Human Uridine-Cytidine Kinase 2
Complexed With A Feedback-Inhibitor, Utp
pdb|1UEJ|A Chain A, Crystal Structure Of Human Uridine-Cytidine Kinase 2
Complexed With A Substrate, Cytidine
pdb|1UEJ|B Chain B, Crystal Structure Of Human Uridine-Cytidine Kinase 2
Complexed With A Substrate, Cytidine
pdb|1UFQ|A Chain A, Crystal Structure Of Ligand-Free Human Uridine-Cytidine
Kinase 2
pdb|1UFQ|B Chain B, Crystal Structure Of Ligand-Free Human Uridine-Cytidine
Kinase 2
pdb|1UFQ|C Chain C, Crystal Structure Of Ligand-Free Human Uridine-Cytidine
Kinase 2
pdb|1UFQ|D Chain D, Crystal Structure Of Ligand-Free Human Uridine-Cytidine
Kinase 2
pdb|1UJ2|A Chain A, Crystal Structure Of Human Uridine-cytidine Kinase 2
Complexed With Products, Cmp And Adp
pdb|1UJ2|B Chain B, Crystal Structure Of Human Uridine-cytidine Kinase 2
Complexed With Products, Cmp And Adp
Length = 252
Score = 153 bits (386), Expect = 8e-38, Method: Compositional matrix adjust.
Identities = 74/130 (56%), Positives = 95/130 (73%), Gaps = 1/130 (0%)
Query: 1 MEKLRHGQAVDIPNYDFKSYKNNVFPARRVNPSDVILLEGILVFHDSRVRELMNMKIFVD 60
++++ G+ V IP YDF S+ V P+DV+L EGIL F+ VR+L MK+FVD
Sbjct: 100 LKEITEGKTVQIPVYDFVSHSRKE-ETVTVYPADVVLFEGILAFYSQEVRDLFQMKLFVD 158
Query: 61 TDADVRLARRIRRDTVEKGRDIATVLDQYSKFVKPAFDDFILPTKKYADIIIPRGGDNHV 120
TDAD RL+RR+ RD E+GRD+ +L QY FVKPAF++F LPTKKYAD+IIPRG DN V
Sbjct: 159 TDADTRLSRRVLRDISERGRDLEQILSQYITFVKPAFEEFCLPTKKYADVIIPRGADNLV 218
Query: 121 AIDLIVQHIR 130
AI+LIVQHI+
Sbjct: 219 AINLIVQHIQ 228
>pdb|2JEO|A Chain A, Crystal Structure Of Human Uridine-Cytidine Kinase 1
pdb|2UVQ|A Chain A, Crystal Structure Of Human Uridine-Cytidine Kinase 1 In
Complex With Adp
Length = 245
Score = 149 bits (375), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 73/142 (51%), Positives = 107/142 (75%), Gaps = 3/142 (2%)
Query: 1 MEKLRHGQAVDIPNYDFKSYKNNVFPARRVNPSDVILLEGILVFHDSRVRELMNMKIFVD 60
++ + G+ V++P YDF ++ + + V P+DV+L EGILVF+ +R++ ++++FVD
Sbjct: 103 LKNIVEGKTVEVPTYDFVTH-SRLPETTVVYPADVVLFEGILVFYSQEIRDMFHLRLFVD 161
Query: 61 TDADVRLARRIRRDTVEKGRDIATVLDQYSKFVKPAFDDFILPTKKYADIIIPRGGDNHV 120
TD+DVRL+RR+ RD V +GRD+ +L QY+ FVKPAF++F LPTKKYAD+IIPRG DN V
Sbjct: 162 TDSDVRLSRRVLRD-VRRGRDLEQILTQYTTFVKPAFEEFCLPTKKYADVIIPRGVDNMV 220
Query: 121 AIDLIVQHIRTKLGQHDLCKIY 142
AI+LIVQHI+ L D+CK +
Sbjct: 221 AINLIVQHIQDIL-NGDICKWH 241
>pdb|3ASY|A Chain A, Ligand-Free Structure Of Uridine Kinase From Thermus
Thermophilus Hb8
pdb|3ASY|B Chain B, Ligand-Free Structure Of Uridine Kinase From Thermus
Thermophilus Hb8
pdb|3ASZ|A Chain A, Cmp-Complex Structure Of Uridine Kinase From Thermus
Thermophilus Hb8
pdb|3ASZ|B Chain B, Cmp-Complex Structure Of Uridine Kinase From Thermus
Thermophilus Hb8
Length = 211
Score = 120 bits (300), Expect = 8e-28, Method: Compositional matrix adjust.
Identities = 58/124 (46%), Positives = 87/124 (70%), Gaps = 3/124 (2%)
Query: 2 EKLRHGQAVDIPNYDFKSYKNNVFPARR-VNPSDVILLEGILVFHDSRVRELMNMKIFVD 60
+ L G V++P YDF++Y + P R V P+ V++LEGILV + +R+LM++K+FVD
Sbjct: 75 QALLRGLPVEMPVYDFRAYTRS--PRRTPVRPAPVVILEGILVLYPKELRDLMDLKVFVD 132
Query: 61 TDADVRLARRIRRDTVEKGRDIATVLDQYSKFVKPAFDDFILPTKKYADIIIPRGGDNHV 120
DAD R RR++RD +E+GR + V+ QY + VKP F+ PTK+YAD+I+PRGG N V
Sbjct: 133 ADADERFIRRLKRDVLERGRSLEGVVAQYLEQVKPMHLHFVEPTKRYADVIVPRGGQNPV 192
Query: 121 AIDL 124
A+++
Sbjct: 193 ALEM 196
>pdb|1BD3|D Chain D, Structure Of The Apo Uracil Phosphoribosyltransferase, 2
Mutant C128v
pdb|1BD3|C Chain C, Structure Of The Apo Uracil Phosphoribosyltransferase, 2
Mutant C128v
pdb|1BD3|B Chain B, Structure Of The Apo Uracil Phosphoribosyltransferase, 2
Mutant C128v
pdb|1BD3|A Chain A, Structure Of The Apo Uracil Phosphoribosyltransferase, 2
Mutant C128v
pdb|1BD4|D Chain D, Uprt-Uracil Complex
pdb|1BD4|C Chain C, Uprt-Uracil Complex
pdb|1BD4|B Chain B, Uprt-Uracil Complex
pdb|1BD4|A Chain A, Uprt-Uracil Complex
pdb|1JLS|B Chain B, Structure Of The Uracil Phosphoribosyltransferase
UracilCPR 2 MUTANT C128V
pdb|1JLS|A Chain A, Structure Of The Uracil Phosphoribosyltransferase
UracilCPR 2 MUTANT C128V
pdb|1JLS|D Chain D, Structure Of The Uracil Phosphoribosyltransferase
UracilCPR 2 MUTANT C128V
pdb|1JLS|C Chain C, Structure Of The Uracil Phosphoribosyltransferase
UracilCPR 2 MUTANT C128V
pdb|1JLR|A Chain A, Structure Of The Uracil Phosphoribosyltransferase Gtp
Complex 2 Mutant C128v
pdb|1JLR|B Chain B, Structure Of The Uracil Phosphoribosyltransferase Gtp
Complex 2 Mutant C128v
pdb|1JLR|D Chain D, Structure Of The Uracil Phosphoribosyltransferase Gtp
Complex 2 Mutant C128v
pdb|1JLR|C Chain C, Structure Of The Uracil Phosphoribosyltransferase Gtp
Complex 2 Mutant C128v
Length = 243
Score = 96.7 bits (239), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 41/86 (47%), Positives = 59/86 (68%)
Query: 136 HDLCKIYPNLYVIHSTFQIRGMHTLIRDSQTTKHDFVFYSDRLIRLVVEHGLGHLPFTEK 195
D+ +PN+ ++ T Q+R M T+IRD +T K +FVFY+DRLIRL++E L LPF +K
Sbjct: 26 QDIITRFPNVVLMKQTAQLRAMMTIIRDKETPKEEFVFYADRLIRLLIEEALNELPFQKK 85
Query: 196 QVITPTGAVYTGVDFCKRLCGVSVIR 221
+V TP Y GV F ++CGVS++R
Sbjct: 86 EVTTPLDVSYHGVSFYSKICGVSIVR 111
>pdb|1UPU|D Chain D, Structure Of The Uracil Phosphoribosyltransferase, Mutant
C128v, Bound To Product Uridine-1-Monophosphate (Ump)
pdb|1UPU|C Chain C, Structure Of The Uracil Phosphoribosyltransferase, Mutant
C128v, Bound To Product Uridine-1-Monophosphate (Ump)
pdb|1UPU|B Chain B, Structure Of The Uracil Phosphoribosyltransferase, Mutant
C128v, Bound To Product Uridine-1-Monophosphate (Ump)
pdb|1UPU|A Chain A, Structure Of The Uracil Phosphoribosyltransferase, Mutant
C128v, Bound To Product Uridine-1-Monophosphate (Ump)
pdb|1UPF|D Chain D, Structure Of The Uracil Phosphoribosyltransferase, Mutant
C128v Bound To The Drug 5-Fluorouracil
pdb|1UPF|C Chain C, Structure Of The Uracil Phosphoribosyltransferase, Mutant
C128v Bound To The Drug 5-Fluorouracil
pdb|1UPF|B Chain B, Structure Of The Uracil Phosphoribosyltransferase, Mutant
C128v Bound To The Drug 5-Fluorouracil
pdb|1UPF|A Chain A, Structure Of The Uracil Phosphoribosyltransferase, Mutant
C128v Bound To The Drug 5-Fluorouracil
Length = 224
Score = 96.3 bits (238), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 41/86 (47%), Positives = 59/86 (68%)
Query: 136 HDLCKIYPNLYVIHSTFQIRGMHTLIRDSQTTKHDFVFYSDRLIRLVVEHGLGHLPFTEK 195
D+ +PN+ ++ T Q+R M T+IRD +T K +FVFY+DRLIRL++E L LPF +K
Sbjct: 7 QDIITRFPNVVLMKQTAQLRAMMTIIRDKETPKEEFVFYADRLIRLLIEEALNELPFQKK 66
Query: 196 QVITPTGAVYTGVDFCKRLCGVSVIR 221
+V TP Y GV F ++CGVS++R
Sbjct: 67 EVTTPLDVSYHGVSFYSKICGVSIVR 92
>pdb|2XZM|H Chain H, Crystal Structure Of The Eukaryotic 40s Ribosomal Subunit
In Complex With Initiation Factor 1. This File Contains
The 40s Subunit And Initiation Factor For Molecule 1
pdb|2XZN|H Chain H, Crystal Structure Of The Eukaryotic 40s Ribosomal Subunit
In Complex With Initiation Factor 1. This File Contains
The 40s Subunit And Initiation Factor For Molecule 2
Length = 130
Score = 31.2 bits (69), Expect = 0.53, Method: Compositional matrix adjust.
Identities = 13/40 (32%), Positives = 21/40 (52%)
Query: 11 DIPNYDFKSYKNNVFPARRVNPSDVILLEGILVFHDSRVR 50
D+P DF+ + NN+ P+R+ + GIL + R R
Sbjct: 80 DVPLADFEKWTNNILPSRQFGNVVLTTTYGILTHEECRKR 119
>pdb|3UN6|A Chain A, 2.0 Angstrom Crystal Structure Of Ligand Binding Component
Of Abc-Type Import System From Staphylococcus Aureus
With Zinc Bound
Length = 341
Score = 28.5 bits (62), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 10/25 (40%), Positives = 18/25 (72%)
Query: 80 RDIATVLDQYSKFVKPAFDDFILPT 104
++I T++ Q+ F PA+DDF+ P+
Sbjct: 309 QEITTLVKQHHLFNPPAYDDFVEPS 333
>pdb|1P8P|A Chain A, Structural And Functional Importance Of First-shell Metal
Ligands In The Binuclear Manganese Cluster Of Arginase
I.
pdb|1P8P|B Chain B, Structural And Functional Importance Of First-shell Metal
Ligands In The Binuclear Manganese Cluster Of Arginase
I.
pdb|1P8P|C Chain C, Structural And Functional Importance Of First-shell Metal
Ligands In The Binuclear Manganese Cluster Of Arginase I
Length = 314
Score = 28.5 bits (62), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 16/39 (41%), Positives = 20/39 (51%), Gaps = 3/39 (7%)
Query: 104 TKKYADIIIPRGGDNHVAIDLIVQHIRTKLGQHDLCKIY 142
T+K I + GGDN +AI I H R DLC I+
Sbjct: 82 TQKNGTISVVLGGDNSMAIGSISGHARV---HPDLCVIW 117
>pdb|3DMP|A Chain A, 2.6 A Crystal Structure Of Uracil
Phosphoribosyltransferase From Burkholderia Pseudomallei
pdb|3DMP|B Chain B, 2.6 A Crystal Structure Of Uracil
Phosphoribosyltransferase From Burkholderia Pseudomallei
pdb|3DMP|C Chain C, 2.6 A Crystal Structure Of Uracil
Phosphoribosyltransferase From Burkholderia Pseudomallei
pdb|3DMP|D Chain D, 2.6 A Crystal Structure Of Uracil
Phosphoribosyltransferase From Burkholderia Pseudomallei
Length = 217
Score = 28.5 bits (62), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 24/81 (29%), Positives = 38/81 (46%), Gaps = 3/81 (3%)
Query: 142 YPNLYVI-HSTFQIRGMHTLIRDSQTTKHDFVFYSDRLIRLVVEHGLGHLPFTEKQVITP 200
+PNL+++ H Q + H +RD T+ F + L+ +LP T K+V TP
Sbjct: 8 FPNLFILDHPLIQHKLTH--MRDKDTSTRTFRELLREITLLMGYEITRNLPITTKRVETP 65
Query: 201 TGAVYTGVDFCKRLCGVSVIR 221
+ V K+L V V+R
Sbjct: 66 LVEIDAPVIAGKKLAIVPVLR 86
>pdb|3RLA|A Chain A, Altering The Binuclear Manganese Cluster Of Arginase
Diminishes Thermostability And Catalytic Function
pdb|3RLA|B Chain B, Altering The Binuclear Manganese Cluster Of Arginase
Diminishes Thermostability And Catalytic Function
pdb|3RLA|C Chain C, Altering The Binuclear Manganese Cluster Of Arginase
Diminishes Thermostability And Catalytic Function
pdb|4RLA|A Chain A, Altering The Binuclear Manganese Cluster Of Arginase
Diminishes Thermostability And Catalytic Function
pdb|4RLA|B Chain B, Altering The Binuclear Manganese Cluster Of Arginase
Diminishes Thermostability And Catalytic Function
pdb|4RLA|C Chain C, Altering The Binuclear Manganese Cluster Of Arginase
Diminishes Thermostability And Catalytic Function
pdb|5RLA|A Chain A, Altering The Binuclear Manganese Cluster Of Arginase
Diminishes Thermostability And Catalytic Function
pdb|5RLA|B Chain B, Altering The Binuclear Manganese Cluster Of Arginase
Diminishes Thermostability And Catalytic Function
pdb|5RLA|C Chain C, Altering The Binuclear Manganese Cluster Of Arginase
Diminishes Thermostability And Catalytic Function
Length = 323
Score = 28.5 bits (62), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 16/39 (41%), Positives = 20/39 (51%), Gaps = 3/39 (7%)
Query: 104 TKKYADIIIPRGGDNHVAIDLIVQHIRTKLGQHDLCKIY 142
T+K I + GGDN +AI I H R DLC I+
Sbjct: 87 TQKNGTISVVLGGDNSMAIGSISGHARV---HPDLCVIW 122
>pdb|3IWT|A Chain A, Structure Of Hypothetical Molybdenum Cofactor Biosynthesis
Protein B From Sulfolobus Tokodaii
pdb|3IWT|B Chain B, Structure Of Hypothetical Molybdenum Cofactor Biosynthesis
Protein B From Sulfolobus Tokodaii
pdb|3IWT|C Chain C, Structure Of Hypothetical Molybdenum Cofactor Biosynthesis
Protein B From Sulfolobus Tokodaii
Length = 178
Score = 28.1 bits (61), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 26/93 (27%), Positives = 43/93 (46%), Gaps = 11/93 (11%)
Query: 41 ILVFHDSRVRELMNMKIFVDTDADVRLARRIRRDTVEKGRDI---ATVLDQYSKFVKPAF 97
++ SR +L+ + VD D+ I++ +E G I + V D K +K AF
Sbjct: 20 VITISTSRYEKLLKKEPIVDESGDI-----IKQLLIENGHKIIGYSLVPDDKIKILK-AF 73
Query: 98 DDFILPTKKYADIIIPRGGDNHVAIDLIVQHIR 130
D + + D+II GG + D+ V+ IR
Sbjct: 74 TDAL--SIDEVDVIISTGGTGYSPTDITVETIR 104
>pdb|3IZB|J Chain J, Localization Of The Small Subunit Ribosomal Proteins Into
A 6.1 A Cryo-Em Map Of Saccharomyces Cerevisiae
Translating 80s Ribosome
pdb|3O2Z|N Chain N, Yeast 80s Ribosome. This Entry Consists Of The 40s Subunit
Of The First 80s In The Asymmetric Unit.
pdb|3O30|N Chain N, Yeast 80s Ribosome. This Entry Consists Of The 40s Subunit
Of The Second 80s In The Asymmetric Unit.
pdb|3U5C|U Chain U, The Structure Of The Eukaryotic Ribosome At 3.0 A
Resolution. This Entry Contains Proteins Of The 40s
Subunit, Ribosome A
pdb|3U5G|U Chain U, The Structure Of The Eukaryotic Ribosome At 3.0 A
Resolution. This Entry Contains Proteins Of The 40s
Subunit, Ribosome B
Length = 121
Score = 27.7 bits (60), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 14/43 (32%), Positives = 26/43 (60%), Gaps = 3/43 (6%)
Query: 47 SRVRELMNMKI---FVDTDADVRLARRIRRDTVEKGRDIATVL 86
S+ E M+I ++D +A V++ +RI + T+E G D+ V+
Sbjct: 76 SKTWETYEMRIHKRYIDLEAPVQIVKRITQITIEPGVDVEVVV 118
>pdb|1S1H|J Chain J, Structure Of The Ribosomal 80s-Eef2-Sordarin Complex
From Yeast Obtained By Docking Atomic Models For Rna
And Protein Components Into A 11.7 A Cryo-Em Map. This
File, 1s1h, Contains 40s Subunit. The 60s Ribosomal
Subunit Is In File 1s1i
Length = 100
Score = 27.3 bits (59), Expect = 6.3, Method: Compositional matrix adjust.
Identities = 14/42 (33%), Positives = 25/42 (59%), Gaps = 3/42 (7%)
Query: 47 SRVRELMNMKI---FVDTDADVRLARRIRRDTVEKGRDIATV 85
S+ E M+I ++D +A V++ +RI + T+E G D+ V
Sbjct: 56 SKTWETYEMRIHKRYIDLEAPVQIVKRITQITIEPGVDVEVV 97
>pdb|4GHK|A Chain A, X-Ray Crystal Structure Of Gamma-Glutamyl Phosphate
Reductase From Burkholderia Thailandensis
pdb|4GHK|B Chain B, X-Ray Crystal Structure Of Gamma-Glutamyl Phosphate
Reductase From Burkholderia Thailandensis
pdb|4GHK|C Chain C, X-Ray Crystal Structure Of Gamma-Glutamyl Phosphate
Reductase From Burkholderia Thailandensis
pdb|4GHK|D Chain D, X-Ray Crystal Structure Of Gamma-Glutamyl Phosphate
Reductase From Burkholderia Thailandensis
Length = 444
Score = 27.3 bits (59), Expect = 7.2, Method: Compositional matrix adjust.
Identities = 21/83 (25%), Positives = 39/83 (46%), Gaps = 6/83 (7%)
Query: 62 DADVRLARRIRRDTVEKGRDIATVLDQYSKFVKPAFDDFILPTKKYADIIIPRGGDNHVA 121
+++ LA+ I E G TV Q + A ++ +Y D+I+PRGG +
Sbjct: 176 ESNTALAKLIGEGLAEAGLPQDTV--QVVETADRAAVGRLITMTEYVDVIVPRGGKS--L 231
Query: 122 IDLIVQHIRTKLGQH--DLCKIY 142
I+ ++ R + +H +C +Y
Sbjct: 232 IERLINEARVPMIKHLDGICHVY 254
>pdb|3QXE|A Chain A, Crystal Structure Of Co-Type Nitrile Hydratase From
Pseudomonas Putida.
pdb|3QXE|C Chain C, Crystal Structure Of Co-Type Nitrile Hydratase From
Pseudomonas Putida.
pdb|3QXE|E Chain E, Crystal Structure Of Co-Type Nitrile Hydratase From
Pseudomonas Putida.
pdb|3QXE|G Chain G, Crystal Structure Of Co-Type Nitrile Hydratase From
Pseudomonas Putida.
pdb|3QYG|A Chain A, Crystal Structure Of Co-Type Nitrile Hydratase Beta-E56q
From Pseudomonas Putida.
pdb|3QYG|C Chain C, Crystal Structure Of Co-Type Nitrile Hydratase Beta-E56q
From Pseudomonas Putida.
pdb|3QYG|E Chain E, Crystal Structure Of Co-Type Nitrile Hydratase Beta-E56q
From Pseudomonas Putida.
pdb|3QYG|G Chain G, Crystal Structure Of Co-Type Nitrile Hydratase Beta-E56q
From Pseudomonas Putida.
pdb|3QYH|A Chain A, Crystal Structure Of Co-Type Nitrile Hydratase Beta-H71l
From Pseudomonas Putida.
pdb|3QYH|C Chain C, Crystal Structure Of Co-Type Nitrile Hydratase Beta-H71l
From Pseudomonas Putida.
pdb|3QYH|E Chain E, Crystal Structure Of Co-Type Nitrile Hydratase Beta-H71l
From Pseudomonas Putida.
pdb|3QYH|G Chain G, Crystal Structure Of Co-Type Nitrile Hydratase Beta-H71l
From Pseudomonas Putida.
pdb|3QZ9|A Chain A, Crystal Structure Of Co-Type Nitrile Hydratase Beta-Y215f
From Pseudomonas Putida.
pdb|3QZ9|C Chain C, Crystal Structure Of Co-Type Nitrile Hydratase Beta-Y215f
From Pseudomonas Putida.
pdb|3QZ9|E Chain E, Crystal Structure Of Co-Type Nitrile Hydratase Beta-Y215f
From Pseudomonas Putida.
pdb|3QZ9|G Chain G, Crystal Structure Of Co-Type Nitrile Hydratase Beta-Y215f
From Pseudomonas Putida
Length = 226
Score = 26.9 bits (58), Expect = 9.4, Method: Compositional matrix adjust.
Identities = 14/50 (28%), Positives = 25/50 (50%)
Query: 98 DDFILPTKKYADIIIPRGGDNHVAIDLIVQHIRTKLGQHDLCKIYPNLYV 147
+D L K ++I +G + A+DL+VQ K+G + K+ +V
Sbjct: 34 EDIALRVKALESLLIEKGLVDPAAMDLVVQTYEHKVGPRNGAKVVAKAWV 83
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.327 0.144 0.431
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 6,717,713
Number of Sequences: 62578
Number of extensions: 276687
Number of successful extensions: 798
Number of sequences better than 100.0: 18
Number of HSP's better than 100.0 without gapping: 13
Number of HSP's successfully gapped in prelim test: 5
Number of HSP's that attempted gapping in prelim test: 780
Number of HSP's gapped (non-prelim): 18
length of query: 222
length of database: 14,973,337
effective HSP length: 95
effective length of query: 127
effective length of database: 9,028,427
effective search space: 1146610229
effective search space used: 1146610229
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 49 (23.5 bits)