Query 027528
Match_columns 222
No_of_seqs 235 out of 1843
Neff 7.3
Searched_HMMs 46136
Date Fri Mar 29 11:16:44 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/027528.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/027528hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG4203 Armadillo/beta-Catenin 100.0 7.8E-36 1.7E-40 275.5 7.7 221 2-222 123-343 (473)
2 COG0572 Udk Uridine kinase [Nu 100.0 1.4E-32 3E-37 229.6 9.2 135 1-136 77-211 (218)
3 PTZ00301 uridine kinase; Provi 100.0 3.7E-30 8E-35 215.9 11.4 133 1-134 76-208 (210)
4 PF00485 PRK: Phosphoribulokin 99.9 3.9E-28 8.4E-33 200.7 6.5 118 1-120 76-193 (194)
5 PLN02318 phosphoribulokinase/u 99.9 3.9E-26 8.4E-31 213.6 7.9 148 1-149 126-286 (656)
6 cd02029 PRK_like Phosphoribulo 99.9 2.7E-23 5.8E-28 178.9 8.1 112 1-114 77-201 (277)
7 PRK05480 uridine/cytidine kina 99.9 1.3E-22 2.9E-27 169.1 11.2 134 2-136 76-209 (209)
8 cd02025 PanK Pantothenate kina 99.9 7.9E-23 1.7E-27 172.6 7.0 119 1-119 71-214 (220)
9 TIGR00235 udk uridine kinase. 99.9 4.3E-22 9.4E-27 166.1 11.2 132 1-133 75-206 (207)
10 PLN02348 phosphoribulokinase 99.9 2E-22 4.4E-27 181.5 9.4 110 1-113 133-242 (395)
11 COG0035 Upp Uracil phosphoribo 99.9 6.7E-22 1.5E-26 163.6 8.9 78 143-222 2-80 (210)
12 cd02028 UMPK_like Uridine mono 99.9 5.6E-22 1.2E-26 162.4 7.7 109 2-113 68-178 (179)
13 TIGR00554 panK_bact pantothena 99.8 2.3E-21 4.9E-26 169.7 7.8 120 1-120 134-283 (290)
14 PRK05439 pantothenate kinase; 99.8 4.1E-21 8.9E-26 169.3 9.2 120 1-120 158-303 (311)
15 cd02023 UMPK Uridine monophosp 99.8 1.8E-20 4E-25 154.9 10.7 129 2-131 69-197 (198)
16 PRK15453 phosphoribulokinase; 99.8 1.6E-20 3.5E-25 162.8 8.6 113 1-114 83-207 (290)
17 PLN02541 uracil phosphoribosyl 99.8 8.3E-20 1.8E-24 155.9 9.3 78 144-222 32-112 (244)
18 TIGR01091 upp uracil phosphori 99.8 8.3E-20 1.8E-24 152.9 8.9 77 144-222 1-78 (207)
19 PRK00129 upp uracil phosphorib 99.8 8.3E-20 1.8E-24 153.1 8.9 78 143-222 2-80 (209)
20 cd02026 PRK Phosphoribulokinas 99.8 1.2E-19 2.5E-24 158.0 8.2 110 2-114 67-176 (273)
21 PRK07429 phosphoribulokinase; 99.8 5.8E-19 1.3E-23 157.1 9.1 111 2-115 76-186 (327)
22 PF14681 UPRTase: Uracil phosp 99.8 5.9E-19 1.3E-23 147.8 8.1 73 150-222 3-77 (207)
23 KOG1017 Predicted uracil phosp 99.7 6.6E-17 1.4E-21 132.1 4.9 82 141-222 64-145 (267)
24 PRK09270 nucleoside triphospha 99.6 1.1E-14 2.5E-19 123.2 8.9 115 2-119 105-225 (229)
25 PRK07667 uridine kinase; Provi 99.5 1.6E-14 3.5E-19 119.4 7.1 102 2-113 90-193 (193)
26 PRK06696 uridine kinase; Valid 99.5 2.8E-14 6E-19 120.4 8.2 106 9-116 104-211 (223)
27 COG1072 CoaA Panthothenate kin 99.4 1.1E-13 2.4E-18 119.1 5.2 113 1-115 154-271 (283)
28 PRK06547 hypothetical protein; 99.4 6.3E-13 1.4E-17 108.3 8.0 95 6-113 70-171 (172)
29 cd02024 NRK1 Nicotinamide ribo 99.4 3.5E-13 7.5E-18 111.2 3.3 100 1-100 66-179 (187)
30 KOG2702 Predicted panthothenat 99.0 1.6E-10 3.5E-15 97.5 4.2 104 7-113 209-319 (323)
31 PRK08233 hypothetical protein; 98.9 8.9E-09 1.9E-13 83.1 8.5 99 33-135 78-177 (182)
32 PLN03046 D-glycerate 3-kinase; 98.5 1.9E-07 4.2E-12 85.5 6.4 100 4-104 296-432 (460)
33 cd02022 DPCK Dephospho-coenzym 98.3 2.5E-06 5.5E-11 69.5 6.7 74 33-117 103-176 (179)
34 PRK14730 coaE dephospho-CoA ki 98.2 1.2E-05 2.7E-10 66.6 9.6 86 33-133 107-192 (195)
35 PRK14732 coaE dephospho-CoA ki 98.2 7.6E-06 1.7E-10 68.0 8.1 74 33-117 103-176 (196)
36 cd02020 CMPK Cytidine monophos 98.2 5.3E-06 1.1E-10 64.3 6.6 80 33-114 65-146 (147)
37 PRK14734 coaE dephospho-CoA ki 98.0 4.8E-05 1E-09 63.3 9.6 75 32-117 106-180 (200)
38 PRK00081 coaE dephospho-CoA ki 97.9 6.2E-05 1.3E-09 62.2 8.4 85 34-133 107-191 (194)
39 PLN02422 dephospho-CoA kinase 97.8 0.00014 3E-09 62.1 9.7 74 33-117 107-180 (232)
40 PRK03333 coaE dephospho-CoA ki 97.8 9.5E-05 2.1E-09 67.8 8.9 77 32-118 103-179 (395)
41 PLN02796 D-glycerate 3-kinase 97.8 5.2E-05 1.1E-09 68.1 6.9 96 6-102 186-318 (347)
42 PF01121 CoaE: Dephospho-CoA k 97.8 5.8E-05 1.3E-09 61.9 6.6 73 34-117 105-177 (180)
43 PRK14731 coaE dephospho-CoA ki 97.8 0.00027 5.9E-09 59.0 10.1 75 32-117 114-188 (208)
44 PRK14733 coaE dephospho-CoA ki 97.7 0.00031 6.8E-09 58.8 9.8 75 32-116 107-182 (204)
45 PTZ00451 dephospho-CoA kinase; 97.7 0.00028 6.1E-09 60.7 9.5 73 33-115 117-189 (244)
46 TIGR00152 dephospho-CoA kinase 97.7 0.0002 4.3E-09 58.6 7.7 73 34-117 106-178 (188)
47 PRK01184 hypothetical protein; 97.6 0.00038 8.2E-09 56.5 8.4 82 32-117 79-164 (184)
48 TIGR02173 cyt_kin_arch cytidyl 97.5 0.00058 1.3E-08 54.2 8.2 90 33-128 74-169 (171)
49 PRK04182 cytidylate kinase; Pr 97.4 0.0016 3.4E-08 52.1 9.6 94 32-131 73-173 (180)
50 PRK00023 cmk cytidylate kinase 97.2 0.0023 5E-08 54.2 9.3 97 34-132 123-222 (225)
51 COG1102 Cmk Cytidylate kinase 97.0 0.003 6.5E-08 51.1 7.3 81 33-119 73-159 (179)
52 PRK13477 bifunctional pantoate 96.8 0.0077 1.7E-07 57.0 9.3 122 7-134 357-502 (512)
53 PRK08118 topology modulation p 96.7 0.0023 5E-08 51.6 4.2 49 34-82 60-108 (167)
54 TIGR00017 cmk cytidylate kinas 96.7 0.011 2.5E-07 49.7 8.6 93 34-131 121-215 (217)
55 PRK06217 hypothetical protein; 96.6 0.0078 1.7E-07 48.9 7.3 45 33-77 64-108 (183)
56 KOG3308 Uncharacterized protei 96.4 0.0018 3.8E-08 54.1 2.1 84 27-115 102-187 (225)
57 COG3954 PrkB Phosphoribulokina 96.3 0.012 2.7E-07 49.0 6.6 87 26-113 116-206 (289)
58 KOG3220 Similar to bacterial d 96.3 0.018 4E-07 48.1 7.3 78 29-117 103-180 (225)
59 PRK07261 topology modulation p 96.2 0.0021 4.5E-08 52.0 1.1 53 32-85 58-111 (171)
60 PRK00131 aroK shikimate kinase 96.1 0.034 7.4E-07 43.9 8.1 94 33-133 74-173 (175)
61 PRK09518 bifunctional cytidyla 96.0 0.028 6.1E-07 55.4 8.4 94 35-134 139-234 (712)
62 PRK11860 bifunctional 3-phosph 95.9 0.034 7.3E-07 54.3 8.3 94 35-134 558-654 (661)
63 COG0237 CoaE Dephospho-CoA kin 95.8 0.039 8.5E-07 46.1 7.4 73 35-118 107-179 (201)
64 PRK13946 shikimate kinase; Pro 95.8 0.078 1.7E-06 43.1 8.8 94 32-133 79-178 (184)
65 PRK05057 aroK shikimate kinase 95.4 0.17 3.8E-06 40.8 9.4 92 33-134 74-170 (172)
66 COG0283 Cmk Cytidylate kinase 95.1 0.1 2.2E-06 44.1 7.5 95 35-134 122-218 (222)
67 PF02224 Cytidylate_kin: Cytid 94.7 0.11 2.3E-06 41.8 6.2 92 33-130 62-156 (157)
68 PRK06762 hypothetical protein; 94.6 0.23 4.9E-06 39.3 8.1 60 31-91 66-133 (166)
69 PRK13949 shikimate kinase; Pro 94.2 0.29 6.3E-06 39.4 7.8 38 33-70 71-111 (169)
70 PRK04040 adenylate kinase; Pro 94.1 0.31 6.7E-06 40.1 8.0 95 32-127 79-185 (188)
71 cd02019 NK Nucleoside/nucleoti 93.9 0.046 1E-06 37.4 2.3 27 35-61 34-63 (69)
72 PRK00625 shikimate kinase; Pro 93.7 0.51 1.1E-05 38.3 8.5 74 33-114 73-149 (173)
73 cd02030 NDUO42 NADH:Ubiquinone 93.4 0.17 3.6E-06 42.5 5.4 72 53-130 143-216 (219)
74 COG1428 Deoxynucleoside kinase 93.0 0.23 4.9E-06 41.9 5.4 78 52-134 126-211 (216)
75 PRK08356 hypothetical protein; 92.9 0.5 1.1E-05 38.7 7.3 93 34-133 95-190 (195)
76 TIGR02322 phosphon_PhnN phosph 92.8 0.75 1.6E-05 36.8 8.1 85 32-133 89-176 (179)
77 PF13207 AAA_17: AAA domain; P 92.6 0.047 1E-06 40.7 0.8 51 31-82 68-119 (121)
78 PRK10078 ribose 1,5-bisphospho 92.4 0.86 1.9E-05 36.9 8.1 83 33-134 89-175 (186)
79 PRK14737 gmk guanylate kinase; 92.2 0.77 1.7E-05 37.6 7.5 74 31-115 92-169 (186)
80 PRK03731 aroL shikimate kinase 92.1 1.2 2.6E-05 35.3 8.4 89 32-133 70-168 (171)
81 PRK12269 bifunctional cytidyla 91.8 0.92 2E-05 45.8 8.9 93 35-134 191-284 (863)
82 PF13238 AAA_18: AAA domain; P 91.7 0.15 3.2E-06 37.9 2.5 43 31-75 71-114 (129)
83 PRK08154 anaerobic benzoate ca 91.5 1.1 2.4E-05 39.6 8.3 91 33-133 204-303 (309)
84 PRK05541 adenylylsulfate kinas 91.3 0.26 5.6E-06 39.5 3.8 91 32-132 77-173 (176)
85 KOG2878 Predicted kinase [Gene 91.3 0.56 1.2E-05 39.6 5.7 95 7-102 121-254 (282)
86 COG4240 Predicted kinase [Gene 90.9 0.22 4.7E-06 42.8 3.0 106 3-110 128-278 (300)
87 PF01202 SKI: Shikimate kinase 90.8 1.6 3.5E-05 34.4 7.9 88 34-129 63-157 (158)
88 PRK00698 tmk thymidylate kinas 90.2 1.3 2.8E-05 35.9 7.1 23 52-74 127-149 (205)
89 PF01712 dNK: Deoxynucleoside 90.1 0.25 5.5E-06 38.8 2.6 58 53-115 68-127 (146)
90 COG0703 AroK Shikimate kinase 89.9 2.3 4.9E-05 34.8 8.1 89 34-130 73-167 (172)
91 cd01672 TMPK Thymidine monopho 89.7 1.2 2.6E-05 35.6 6.4 73 52-133 125-198 (200)
92 PLN02200 adenylate kinase fami 88.8 1.3 2.8E-05 37.7 6.2 42 34-75 121-168 (234)
93 cd00464 SK Shikimate kinase (S 88.6 2.2 4.7E-05 32.8 7.0 76 32-115 68-148 (154)
94 PRK13947 shikimate kinase; Pro 88.5 4.6 9.9E-05 31.8 8.9 67 53-131 94-163 (171)
95 TIGR03263 guanyl_kin guanylate 87.8 2 4.3E-05 34.2 6.5 87 32-133 90-178 (180)
96 PRK13974 thymidylate kinase; P 87.5 2.3 5E-05 35.3 6.9 45 53-101 135-179 (212)
97 COG0125 Tmk Thymidylate kinase 87.1 2.3 5E-05 35.7 6.6 74 52-133 127-201 (208)
98 TIGR01360 aden_kin_iso1 adenyl 86.9 3.4 7.3E-05 32.9 7.3 45 31-75 80-129 (188)
99 PRK14527 adenylate kinase; Pro 86.7 2.6 5.7E-05 34.1 6.7 42 34-75 84-134 (191)
100 PRK13808 adenylate kinase; Pro 86.4 4.9 0.00011 36.2 8.7 40 33-73 78-127 (333)
101 PRK13975 thymidylate kinase; P 85.7 3.9 8.5E-05 32.9 7.2 23 52-74 113-135 (196)
102 PRK14530 adenylate kinase; Pro 85.3 5 0.00011 33.2 7.8 41 33-74 82-127 (215)
103 PRK13973 thymidylate kinase; P 84.8 3.7 7.9E-05 34.1 6.7 23 52-74 128-150 (213)
104 PF02223 Thymidylate_kin: Thym 84.5 2.8 6.1E-05 33.6 5.8 48 52-102 118-165 (186)
105 cd01673 dNK Deoxyribonucleosid 84.1 1.4 3E-05 35.6 3.8 57 52-113 124-182 (193)
106 PRK07933 thymidylate kinase; V 83.9 2.8 6.1E-05 35.0 5.6 78 52-133 132-211 (213)
107 PRK13976 thymidylate kinase; P 82.2 3.4 7.3E-05 34.5 5.5 52 53-111 125-176 (209)
108 PRK02496 adk adenylate kinase; 81.5 2.7 5.8E-05 33.7 4.5 42 33-74 79-129 (184)
109 PRK12338 hypothetical protein; 81.4 3.9 8.5E-05 36.6 5.9 97 31-134 103-207 (319)
110 TIGR03574 selen_PSTK L-seryl-t 81.2 24 0.00052 29.8 10.5 131 32-189 67-205 (249)
111 PRK14528 adenylate kinase; Pro 77.8 5.8 0.00012 32.2 5.4 44 33-76 79-131 (186)
112 PF08433 KTI12: Chromatin asso 76.1 20 0.00044 31.2 8.6 135 30-190 68-210 (270)
113 PRK03839 putative kinase; Prov 75.2 26 0.00056 27.8 8.5 36 34-74 66-101 (180)
114 KOG3079 Uridylate kinase/adeny 75.1 6.3 0.00014 32.7 4.8 25 52-76 112-136 (195)
115 PRK00300 gmk guanylate kinase; 72.7 19 0.00041 29.1 7.3 85 34-134 96-183 (205)
116 TIGR00041 DTMP_kinase thymidyl 71.0 14 0.00031 29.5 6.2 23 53-75 128-150 (195)
117 PF13189 Cytidylate_kin2: Cyti 70.6 6.7 0.00015 31.7 4.0 75 35-115 97-178 (179)
118 TIGR00455 apsK adenylylsulfate 69.9 41 0.00088 26.8 8.6 39 31-69 88-132 (184)
119 TIGR01359 UMP_CMP_kin_fam UMP- 69.6 26 0.00057 27.7 7.3 43 33-75 76-126 (183)
120 PF03668 ATP_bind_2: P-loop AT 67.1 17 0.00037 32.0 6.0 69 55-134 84-155 (284)
121 PRK14531 adenylate kinase; Pro 66.9 14 0.0003 29.7 5.2 41 34-74 80-129 (183)
122 PLN02199 shikimate kinase 66.9 40 0.00086 30.1 8.3 40 33-72 173-214 (303)
123 COG3709 Uncharacterized compon 66.6 72 0.0016 26.2 9.3 87 31-130 92-181 (192)
124 PRK00279 adk adenylate kinase; 66.6 48 0.001 27.2 8.5 41 34-74 79-128 (215)
125 PRK05416 glmZ(sRNA)-inactivati 66.3 25 0.00053 31.0 7.0 68 55-133 88-158 (288)
126 PLN02924 thymidylate kinase 64.2 21 0.00046 29.9 6.0 43 52-101 135-177 (220)
127 cd00227 CPT Chloramphenicol (C 64.1 61 0.0013 25.6 8.4 42 32-74 84-132 (175)
128 PF00625 Guanylate_kin: Guanyl 64.0 29 0.00062 27.7 6.6 55 51-115 112-167 (183)
129 COG0194 Gmk Guanylate kinase [ 63.3 27 0.00058 29.0 6.2 58 48-115 107-167 (191)
130 PRK12337 2-phosphoglycerate ki 63.2 16 0.00035 34.5 5.4 99 32-134 358-464 (475)
131 COG1660 Predicted P-loop-conta 62.5 29 0.00062 30.5 6.5 68 55-134 85-156 (286)
132 smart00072 GuKc Guanylate kina 62.0 48 0.001 26.5 7.5 85 32-128 92-179 (184)
133 PRK13948 shikimate kinase; Pro 60.5 60 0.0013 26.4 7.9 75 33-117 80-160 (182)
134 PRK03846 adenylylsulfate kinas 60.2 38 0.00083 27.5 6.7 21 49-69 114-138 (198)
135 TIGR01351 adk adenylate kinase 60.0 76 0.0017 25.9 8.6 42 33-74 78-125 (210)
136 TIGR01313 therm_gnt_kin carboh 59.7 59 0.0013 25.1 7.5 54 33-91 71-130 (163)
137 cd01428 ADK Adenylate kinase ( 56.5 37 0.00079 26.9 6.0 43 33-75 77-127 (194)
138 PRK14021 bifunctional shikimat 56.2 64 0.0014 30.9 8.3 90 33-130 76-175 (542)
139 PRK04220 2-phosphoglycerate ki 50.5 37 0.00081 30.2 5.4 97 32-134 189-293 (301)
140 PRK00889 adenylylsulfate kinas 48.8 17 0.00037 28.7 2.8 38 33-70 76-117 (175)
141 PF02873 MurB_C: UDP-N-acetyle 47.6 24 0.00052 26.3 3.2 45 104-148 60-104 (105)
142 cd02021 GntK Gluconate kinase 47.1 52 0.0011 25.0 5.3 39 55-95 100-138 (150)
143 TIGR03707 PPK2_P_aer polyphosp 46.7 1.2E+02 0.0027 25.8 7.8 80 55-135 138-223 (230)
144 PLN02842 nucleotide kinase 45.3 1.6E+02 0.0034 28.3 8.9 23 52-74 100-122 (505)
145 COG1885 Uncharacterized protei 45.1 1.3E+02 0.0028 22.6 7.2 88 108-199 10-112 (115)
146 TIGR03575 selen_PSTK_euk L-ser 44.3 2.4E+02 0.0053 25.4 11.1 76 32-115 126-211 (340)
147 COG0529 CysC Adenylylsulfate k 43.6 1.1E+02 0.0024 25.4 6.7 85 34-129 96-189 (197)
148 PRK14532 adenylate kinase; Pro 39.7 1.7E+02 0.0036 23.2 7.3 42 33-74 78-128 (188)
149 TIGR03709 PPK2_rel_1 polyphosp 37.4 2E+02 0.0043 25.0 7.8 80 55-135 163-248 (264)
150 PRK13906 murB UDP-N-acetylenol 36.8 43 0.00092 29.7 3.6 49 104-152 256-304 (307)
151 PRK12339 2-phosphoglycerate ki 35.6 80 0.0017 26.0 4.9 44 32-75 96-142 (197)
152 COG1936 Predicted nucleotide k 35.5 1.1E+02 0.0024 25.1 5.5 49 33-90 67-115 (180)
153 KOG4235 Mitochondrial thymidin 35.0 73 0.0016 27.0 4.4 34 52-85 153-187 (244)
154 COG2074 2-phosphoglycerate kin 31.8 1.1E+02 0.0024 26.9 5.2 100 32-133 185-289 (299)
155 PHA03136 thymidine kinase; Pro 29.9 37 0.00079 31.2 2.1 23 53-75 192-214 (378)
156 PRK13951 bifunctional shikimat 28.8 1.9E+02 0.0042 27.3 6.8 67 32-99 69-137 (488)
157 TIGR01223 Pmev_kin_anim phosph 27.3 2.8E+02 0.006 22.9 6.6 41 33-73 91-135 (182)
158 PRK13904 murB UDP-N-acetylenol 26.3 70 0.0015 27.7 3.1 42 105-146 214-255 (257)
159 PRK05537 bifunctional sulfate 26.1 1.5E+02 0.0032 28.8 5.6 92 31-134 463-561 (568)
160 PRK14648 UDP-N-acetylenolpyruv 25.2 85 0.0018 28.6 3.5 46 104-149 297-342 (354)
161 TIGR03708 poly_P_AMP_trns poly 24.4 3.8E+02 0.0082 25.6 7.8 78 55-134 147-235 (493)
162 PRK14649 UDP-N-acetylenolpyruv 24.3 87 0.0019 27.6 3.4 44 104-147 250-293 (295)
163 COG0812 MurB UDP-N-acetylmuram 24.2 1E+02 0.0022 27.4 3.7 46 104-149 242-287 (291)
164 PHA03132 thymidine kinase; Pro 23.8 78 0.0017 30.8 3.2 22 53-74 402-423 (580)
165 TIGR03708 poly_P_AMP_trns poly 23.5 4.2E+02 0.0092 25.3 8.0 77 55-133 406-489 (493)
166 PF14038 YqzE: YqzE-like prote 23.1 46 0.00099 21.9 1.0 17 58-74 16-32 (54)
167 PRK12436 UDP-N-acetylenolpyruv 22.9 1E+02 0.0022 27.3 3.5 45 104-148 256-300 (305)
168 PRK14653 UDP-N-acetylenolpyruv 22.8 1E+02 0.0022 27.2 3.5 43 104-146 253-295 (297)
169 COG2326 Uncharacterized conser 22.5 5E+02 0.011 22.7 7.5 99 34-134 143-265 (270)
170 PF05678 VQ: VQ motif; InterP 22.3 53 0.0012 19.0 1.1 15 165-179 9-23 (31)
171 PF08236 SRI: SRI (Set2 Rpb1 i 22.0 98 0.0021 22.1 2.7 37 151-188 14-50 (88)
172 PRK13905 murB UDP-N-acetylenol 21.9 1.1E+02 0.0025 26.7 3.7 45 104-148 251-295 (298)
173 PRK14652 UDP-N-acetylenolpyruv 21.9 1.1E+02 0.0023 27.1 3.5 46 104-149 254-299 (302)
174 PRK14650 UDP-N-acetylenolpyruv 21.6 1.2E+02 0.0025 27.1 3.6 45 104-148 255-299 (302)
175 TIGR00179 murB UDP-N-acetyleno 20.9 1.1E+02 0.0024 26.7 3.4 44 104-147 239-282 (284)
No 1
>KOG4203 consensus Armadillo/beta-Catenin/plakoglobin [Signal transduction mechanisms; Cytoskeleton]
Probab=100.00 E-value=7.8e-36 Score=275.48 Aligned_cols=221 Identities=60% Similarity=1.037 Sum_probs=212.2
Q ss_pred ccccCCCceeecccccccCccCCCCeeEeCCCcEEEEeccccCCChhhhccCCeEEEEECCHHHHHHHHHhhcccccCCC
Q 027528 2 EKLRHGQAVDIPNYDFKSYKNNVFPARRVNPSDVILLEGILVFHDSRVRELMNMKIFVDTDADVRLARRIRRDTVEKGRD 81 (222)
Q Consensus 2 ~~Lk~g~~v~~P~YD~~~~~r~~~~~~~v~~~~vvIvEGi~~l~~~~l~~~~D~~Ifvd~d~d~rl~Rri~RD~~~rg~~ 81 (222)
+.+++|+++.+|.|||.++++..+..+.+.|++++++||++++|+++.+++++.++|+|++.+.+++||+.||..++|++
T Consensus 123 ~~~~kg~~v~ip~y~~~~~~~~~~~~~~l~~~~~~ilegil~~yd~~~~~l~~~k~fvd~~~d~rla~ri~r~~~~~g~~ 202 (473)
T KOG4203|consen 123 KNLKKGKAVEIPVYDFVTHSRDEEKTIVVYPADVIILEGILAFYDERVRDLFTMKLFVDTDADVRLARRILRDIVERGRD 202 (473)
T ss_pred hcccccceeeceeeeeecccCCCCceEEecCCCceeehhHHHHhHHHHHHHhcceEEEecCcchhhHHHHhcchhhhccc
Confidence 46778999999999999999855557888999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhccccchhhhccccCCCccEEEcCCCCchhhHHHHHHHHHHHhccCCccccCCceeeeccchhhhhhhhhh
Q 027528 82 IATVLDQYSKFVKPAFDDFILPTKKYADIIIPRGGDNHVAIDLIVQHIRTKLGQHDLCKIYPNLYVIHSTFQIRGMHTLI 161 (222)
Q Consensus 82 ~~~~~~~~~~~~~p~~~~~i~p~~~~ADlvi~~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~v~vl~~~p~~~~~lt~l 161 (222)
++.++.+|..+++|+|+.||+|++.+||++|+.+++|.++++.+.++|+..|.++..+.+..|+..++++|++++++|.+
T Consensus 203 l~~i~~q~~~f~kp~~~~~i~p~~~~ad~ii~~~~~n~vai~l~~~~i~~~L~~~~~~~l~~~~~~l~~t~~i~~~~t~~ 282 (473)
T KOG4203|consen 203 LESILTQYSTFVKPAFEEFILPTKKYADVIIPRGGDNDVAIDLIVQHILSILAEKSYVRLYNNVLSLPDTNQIKGKLTLL 282 (473)
T ss_pred HHHHHHHHHhhcCchHHHHhhHHHHhhhheeeccccccccceeeehhhhhhhhccccccccccceecCCccccCCceeEe
Confidence 99999999999999999999999999999999999999999999999999999999889999999999999999999999
Q ss_pred hcCCCCchhhhhhHHHHHHHHHHHHhCCCCCeeeEEeCCCCceeEeeeecCcEeEEEeeCC
Q 027528 162 RDSQTTKHDFVFYSDRLIRLVVEHGLGHLPFTEKQVITPTGAVYTGVDFCKRLCGVSVIRR 222 (222)
Q Consensus 162 Rd~~t~~~~Fr~~~~~i~~lL~~ea~~~l~~~~~~V~TP~~~~~~g~~~~~~i~~V~IlRA 222 (222)
||+.|++.+|.++.+++++++.++++..+|+.+..+.||.|..+.|.....++|+|+|+||
T Consensus 283 ~~~~Ts~~~~~~~~~~~vrl~l~~~~~~~p~~~~~i~~~~~~~~~~~~~~~~i~gv~i~r~ 343 (473)
T KOG4203|consen 283 RDHTTSRHPFSFYSDHLVRLVLEHGLGHLPYTEKRIVTPRGLAYSGVNFCKQICGVSIPRS 343 (473)
T ss_pred ecCCcCCCCHHHHHHHHHHHHhhcccCcccceeeeEecccccchhcccccchhccCCCCcc
Confidence 9999999999999999999999999999999999999999998889987799999999996
No 2
>COG0572 Udk Uridine kinase [Nucleotide transport and metabolism]
Probab=99.98 E-value=1.4e-32 Score=229.55 Aligned_cols=135 Identities=52% Similarity=0.940 Sum_probs=126.4
Q ss_pred CccccCCCceeecccccccCccCCCCeeEeCCCcEEEEeccccCCChhhhccCCeEEEEECCHHHHHHHHHhhcccccCC
Q 027528 1 MEKLRHGQAVDIPNYDFKSYKNNVFPARRVNPSDVILLEGILVFHDSRVRELMNMKIFVDTDADVRLARRIRRDTVEKGR 80 (222)
Q Consensus 1 l~~Lk~g~~v~~P~YD~~~~~r~~~~~~~v~~~~vvIvEGi~~l~~~~l~~~~D~~Ifvd~d~d~rl~Rri~RD~~~rg~ 80 (222)
|..|++|+++..|.|||.+|.| ..+++.+.|.+||||||+|+|+++++++++|+|||||+|.|+|+.||+.||+.+||+
T Consensus 77 L~~L~~g~~v~~P~yd~~~~~r-~~~~i~~~p~~VVIvEGi~~l~d~~lr~~~d~kIfvdtd~D~RliRri~RD~~~rg~ 155 (218)
T COG0572 77 LKDLKQGKPVDLPVYDYKTHTR-EPETIKVEPNDVVIVEGILLLYDERLRDLMDLKIFVDTDADVRLIRRIKRDVQERGR 155 (218)
T ss_pred HHHHHcCCcccccccchhcccc-cCCccccCCCcEEEEecccccccHHHHhhcCEEEEEeCCccHHHHHHHHHHHHHhCC
Confidence 4578999999999999999999 457899999999999999999999999999999999999999999999999999999
Q ss_pred CHHHHHHHHHhccccchhhhccccCCCccEEEcCCCCchhhHHHHHHHHHHHhccC
Q 027528 81 DIATVLDQYSKFVKPAFDDFILPTKKYADIIIPRGGDNHVAIDLIVQHIRTKLGQH 136 (222)
Q Consensus 81 ~~~~~~~~~~~~~~p~~~~~i~p~~~~ADlvi~~~~~~~~~~~~~~~~i~~~l~~~ 136 (222)
++++++++|...++|+|++||+|++++||++||.+..|.++++.+...|...+.+.
T Consensus 156 ~~e~vi~qy~~~vkp~~~~fIeptk~~ADiiip~~~~n~vav~~l~~~I~~~~~~~ 211 (218)
T COG0572 156 DLESVIEQYVKTVRPMYEQFIEPTKKYADIIIPSGGKNEVAVDLLQAKIASSLSEQ 211 (218)
T ss_pred CHHHHHHHHHHhhChhhhhccCcccccceEEeecCCcceeehhHHHHHHHHHhhhh
Confidence 99999999999999999999999999999999999999999998877777765543
No 3
>PTZ00301 uridine kinase; Provisional
Probab=99.97 E-value=3.7e-30 Score=215.86 Aligned_cols=133 Identities=37% Similarity=0.688 Sum_probs=126.1
Q ss_pred CccccCCCceeecccccccCccCCCCeeEeCCCcEEEEeccccCCChhhhccCCeEEEEECCHHHHHHHHHhhcccccCC
Q 027528 1 MEKLRHGQAVDIPNYDFKSYKNNVFPARRVNPSDVILLEGILVFHDSRVRELMNMKIFVDTDADVRLARRIRRDTVEKGR 80 (222)
Q Consensus 1 l~~Lk~g~~v~~P~YD~~~~~r~~~~~~~v~~~~vvIvEGi~~l~~~~l~~~~D~~Ifvd~d~d~rl~Rri~RD~~~rg~ 80 (222)
|..|++|+++.+|.|||.++++ .+....++|.+||||||+|+|+++++++++|++|||++|.++|+.||+.||+.+||+
T Consensus 76 l~~L~~g~~i~~P~yd~~~~~~-~~~~~~i~p~~ViIvEGi~~l~~~~l~~l~D~~ifvd~~~d~~~~Rr~~Rd~~~rG~ 154 (210)
T PTZ00301 76 LRELKSGKTVQIPQYDYVHHTR-SDTAVTMTPKSVLIVEGILLFTNAELRNEMDCLIFVDTPLDICLIRRAKRDMRERGR 154 (210)
T ss_pred HHHHHcCCcccCCCcccccCCc-CCceEEeCCCcEEEEechhhhCCHHHHHhCCEEEEEeCChhHHHHHHHhhhHHhcCC
Confidence 3578899999999999999998 466788999999999999999889999999999999999999999999999999999
Q ss_pred CHHHHHHHHHhccccchhhhccccCCCccEEEcCCCCchhhHHHHHHHHHHHhc
Q 027528 81 DIATVLDQYSKFVKPAFDDFILPTKKYADIIIPRGGDNHVAIDLIVQHIRTKLG 134 (222)
Q Consensus 81 ~~~~~~~~~~~~~~p~~~~~i~p~~~~ADlvi~~~~~~~~~~~~~~~~i~~~l~ 134 (222)
++++++.+|.+.+.|++..||+|++.+||+||+++.+|.+++..+.++|...|+
T Consensus 155 ~~e~v~~~~~~~v~~~~~~~I~p~k~~ADiIi~~~~~~~~~~~~~~~~~~~~~~ 208 (210)
T PTZ00301 155 TFESVIEQYEATVRPMYYAYVEPSKVYADIIVPSWKDNSVAVGVLRAKLNHDLE 208 (210)
T ss_pred CHHHHHHHHHHhhcccHHHHcCccccCCcEEEcCCCcchHHHHHHHHHHHHHcc
Confidence 999999999999999999999999999999999999999999999999988775
No 4
>PF00485 PRK: Phosphoribulokinase / Uridine kinase family; InterPro: IPR006083 Phosphoribulokinase (PRK) 2.7.1.19 from EC catalyses the ATP-dependent phosphorylation of ribulose-5-phosphate to ribulose-1,5-phosphate, a key step in the pentose phosphate pathway where carbon dioxide is assimilated by autotrophic organisms []. In general, plant enzymes are light-activated by the thioredoxin/ferredoxin system, while those from photosynthetic bacteria are regulated by a system that has an absolute requirement for NADH. Thioredoxin/ferredoxin regulation is mediated by the reversible oxidation/reduction of sulphydryl and disulphide groups. Uridine kinase (pyrimidine ribonucleoside kinase) is the rate-limiting enzyme in the pyrimidine salvage pathway. It catalyzes the following reaction: ATP + Uridine = ADP + UMP Pantothenate kinase (2.7.1.33 from EC) catalyzes the rate-limiting step in the biosynthesis of coenzyme A, the conversion of pantothenate to D-4'-phosphopantothenate in the presence of ATP. ; GO: 0005524 ATP binding, 0016301 kinase activity, 0008152 metabolic process; PDB: 2ZSE_A 2ZS7_A 3AF0_A 3AVP_A 2ZS9_A 2ZS8_A 3AEZ_A 2ZSB_A 2ZSD_A 2GEV_A ....
Probab=99.95 E-value=3.9e-28 Score=200.67 Aligned_cols=118 Identities=40% Similarity=0.784 Sum_probs=103.4
Q ss_pred CccccCCCceeecccccccCccCCCCeeEeCCCcEEEEeccccCCChhhhccCCeEEEEECCHHHHHHHHHhhcccccCC
Q 027528 1 MEKLRHGQAVDIPNYDFKSYKNNVFPARRVNPSDVILLEGILVFHDSRVRELMNMKIFVDTDADVRLARRIRRDTVEKGR 80 (222)
Q Consensus 1 l~~Lk~g~~v~~P~YD~~~~~r~~~~~~~v~~~~vvIvEGi~~l~~~~l~~~~D~~Ifvd~d~d~rl~Rri~RD~~~rg~ 80 (222)
|..|++|+.+.+|.|||.++.+. +......+.+||||||+|+|+++.+++++|++|||++|.++++.||+.||+.+||+
T Consensus 76 l~~L~~g~~i~~p~yd~~~~~~~-~~~~~~~~~~ivIvEG~~~l~~~~l~~l~D~~ifld~~~~~~l~Rri~RD~~~rG~ 154 (194)
T PF00485_consen 76 LKALKNGGSIEIPIYDFSTGDRD-PWIIIISPSDIVIVEGIYALYDEELRDLFDLKIFLDADEDLRLERRIQRDVAERGR 154 (194)
T ss_dssp HHHHHTTSCEEEEEEETTTTEEE-EEEEEEES-SEEEEEETTTTSSHCHGGG-SEEEEEEE-HHHHHHHHHHHHHHHS-S
T ss_pred HHHHhCCCcccccccccccccce-eeeeecCCCCEEEEcccceeeeeeecccceeEEEecccHHHHHHHHhhhhccccCC
Confidence 35788999999999999999973 34566689999999999999988999999999999999999999999999999999
Q ss_pred CHHHHHHHHHhccccchhhhccccCCCccEEEcCCCCchh
Q 027528 81 DIATVLDQYSKFVKPAFDDFILPTKKYADIIIPRGGDNHV 120 (222)
Q Consensus 81 ~~~~~~~~~~~~~~p~~~~~i~p~~~~ADlvi~~~~~~~~ 120 (222)
++++++++|. .++|+|..||+|++++||+||+++.+|.+
T Consensus 155 ~~~~~~~~~~-~~~~~~~~~I~p~~~~ADivi~~~~~~~~ 193 (194)
T PF00485_consen 155 SPEEVIAQYE-RVRPGYERYIEPQKERADIVIPSGPTNDI 193 (194)
T ss_dssp -HHHHHHHHH-THHHHHHHCTGGGGGG-SEEEESCTSSHH
T ss_pred cceeEEEEee-cCChhhhhheeccccccEEEECCCCCccc
Confidence 9999999999 79999999999999999999999988754
No 5
>PLN02318 phosphoribulokinase/uridine kinase
Probab=99.93 E-value=3.9e-26 Score=213.55 Aligned_cols=148 Identities=26% Similarity=0.485 Sum_probs=128.4
Q ss_pred CccccCCCceeecccccccCccCCCCeeEeCCCcEEEEeccccCCChhhhccCCeEEEEECCHHHHHHHHHhhcccccCC
Q 027528 1 MEKLRHGQAVDIPNYDFKSYKNNVFPARRVNPSDVILLEGILVFHDSRVRELMNMKIFVDTDADVRLARRIRRDTVEKGR 80 (222)
Q Consensus 1 l~~Lk~g~~v~~P~YD~~~~~r~~~~~~~v~~~~vvIvEGi~~l~~~~l~~~~D~~Ifvd~d~d~rl~Rri~RD~~~rg~ 80 (222)
|..|++|+++.+|.|||.++.+.......+++.+||||||+|+|+ +++++++|++|||++|.+.++.||+.||+.+||+
T Consensus 126 L~~Lr~GksV~iPiYDf~t~~r~~~~~i~v~p~~VVIVEGIyaL~-~~Lr~LlDlkIFVDtdvDirL~RRI~RD~~eRGr 204 (656)
T PLN02318 126 IHDLKAGKSVQVPIYDFKSSSRVGYRTLEVPSSRIVIIEGIYALS-EKLRPLLDLRVSVTGGVHFDLVKRVLRDIQRAGQ 204 (656)
T ss_pred HHHHhCCCceecCccccccCcccCCceeecCCCcEEEEechhhcc-HhHHhhCCEEEEEcCCccHHHHHHHHHHHHHhCC
Confidence 357889999999999999998743346778999999999999996 8999999999999999999999999999999999
Q ss_pred CHHHHHHHHHhccccchhhhccccCCCccEEEcC------CCCchhhH-----HHHHHHHHHHhccCCcc--ccCCceee
Q 027528 81 DIATVLDQYSKFVKPAFDDFILPTKKYADIIIPR------GGDNHVAI-----DLIVQHIRTKLGQHDLC--KIYPNLYV 147 (222)
Q Consensus 81 ~~~~~~~~~~~~~~p~~~~~i~p~~~~ADlvi~~------~~~~~~~~-----~~~~~~i~~~l~~~~~~--~~~~~v~v 147 (222)
++++++++|...++|+|..||+|++++||++|.| +.+|.+++ ++.++||+..|.+++.+ +.+..++.
T Consensus 205 s~EsVi~q~~~~VkP~y~~FIeP~kk~ADIII~n~f~P~~g~~np~~Ilk~~~~~~~~~i~~~L~~~~~~~~~~~~DiYl 284 (656)
T PLN02318 205 EPEEIIHQISETVYPMYKAFIEPDLQTAHIKIVNKFNPFSGFQNPTYILKSSRSVTVEQIKAVLSEDHTETTEETYDIYL 284 (656)
T ss_pred CHHHHHHHHHHhhcchHHHHhCcchhcceEEEecCCCCCCCCCCCeEEecCCccccHHHHHHHhhhccccccceeeEEEe
Confidence 9999999999999999999999999999999943 45677777 88999999999876432 23334555
Q ss_pred ec
Q 027528 148 IH 149 (222)
Q Consensus 148 l~ 149 (222)
..
T Consensus 285 ~~ 286 (656)
T PLN02318 285 LP 286 (656)
T ss_pred cC
Confidence 43
No 6
>cd02029 PRK_like Phosphoribulokinase-like (PRK-like) is a family of proteins similar to phosphoribulokinase (PRK), the enzyme involved in the Benson-Calvin cycle in chloroplasts or photosynthetic prokaryotes. PRK catalyzes the phosphorylation of D-ribulose 5-phosphate to form D-ribulose 1, 5-biphosphate, using ATP and NADPH produced by the primary reactions of photosynthesis.
Probab=99.89 E-value=2.7e-23 Score=178.88 Aligned_cols=112 Identities=18% Similarity=0.206 Sum_probs=97.3
Q ss_pred CccccCCCceeecccccc----------cCccCCCCeeEeCCCcEEEEecccc---CCChhhhccCCeEEEEECCHHHHH
Q 027528 1 MEKLRHGQAVDIPNYDFK----------SYKNNVFPARRVNPSDVILLEGILV---FHDSRVRELMNMKIFVDTDADVRL 67 (222)
Q Consensus 1 l~~Lk~g~~v~~P~YD~~----------~~~r~~~~~~~v~~~~vvIvEGi~~---l~~~~l~~~~D~~Ifvd~d~d~rl 67 (222)
|+.|++|+++..|.|||. ++.+ ......+.|++|||+||+|+ ++++.+++++|+||||+++.++|+
T Consensus 77 l~~L~~g~~i~~p~Y~h~~~~~~~~~~~~gtf-t~~~~~~~p~dvIivEGLhg~~~~~~~~lr~~~DlkIfVd~~~dlr~ 155 (277)
T cd02029 77 FRTYGETGRGRSRYYLHSDEEAAPFNQEPGTF-TPWEDLPEDTDLLFYEGLHGGVVTEGYNVAQHADLLVGVVPIINLEW 155 (277)
T ss_pred HHHHHcCCCcccceeeccccccccccCCCCcc-CCcccccCCCcEEEECCCCcccccccHHHHHhCCeEEEecCcHHHHH
Confidence 356889999999999883 2333 12223358999999999995 455799999999999999999999
Q ss_pred HHHHhhcccccCCCHHHHHHHHHhccccchhhhccccCCCccEEEcC
Q 027528 68 ARRIRRDTVEKGRDIATVLDQYSKFVKPAFDDFILPTKKYADIIIPR 114 (222)
Q Consensus 68 ~Rri~RD~~~rg~~~~~~~~~~~~~~~p~~~~~i~p~~~~ADlvi~~ 114 (222)
.||+.||+.+||++.++++++|.+++ |.|.+||.|++.+||++++.
T Consensus 156 irRI~RD~~ERGrs~EsVi~qilrrm-pdy~~yI~PQ~~~tDI~fqr 201 (277)
T cd02029 156 IQKIHRDTAERGYSAEAVMDTILRRM-PDYINYICPQFSRTDINFQR 201 (277)
T ss_pred HHHHHhhhHhhCCCHHHHHHHHHHhC-chHHhhCCcccccCcEEEec
Confidence 99999999999999999999999986 99999999999999999964
No 7
>PRK05480 uridine/cytidine kinase; Provisional
Probab=99.88 E-value=1.3e-22 Score=169.10 Aligned_cols=134 Identities=49% Similarity=0.862 Sum_probs=123.1
Q ss_pred ccccCCCceeecccccccCccCCCCeeEeCCCcEEEEeccccCCChhhhccCCeEEEEECCHHHHHHHHHhhcccccCCC
Q 027528 2 EKLRHGQAVDIPNYDFKSYKNNVFPARRVNPSDVILLEGILVFHDSRVRELMNMKIFVDTDADVRLARRIRRDTVEKGRD 81 (222)
Q Consensus 2 ~~Lk~g~~v~~P~YD~~~~~r~~~~~~~v~~~~vvIvEGi~~l~~~~l~~~~D~~Ifvd~d~d~rl~Rri~RD~~~rg~~ 81 (222)
+.|++|+.+.+|.||+.++.+ ....+.+.+.++||+||.|++..+.+++++|++|||++|.++++.|++.||..++|++
T Consensus 76 ~~l~~~~~v~~p~~d~~~~~~-~~~~~~~~~~~~vivEg~~l~~~~~~~~~~d~~I~v~~~~~~~~~R~~~Rd~~~rg~~ 154 (209)
T PRK05480 76 KALKAGKAIEIPVYDYTEHTR-SKETIRVEPKDVIILEGILLLEDERLRDLMDIKIFVDTPLDIRLIRRLKRDVNERGRS 154 (209)
T ss_pred HHHHcCCccccCccccccccc-CCCeEEeCCCCEEEEEeehhcCchhHhhhhceeEEEeCChhHHHHHHHhhcchhcCCC
Confidence 467789999999999999987 4556778889999999999998779999999999999999999999999999899999
Q ss_pred HHHHHHHHHhccccchhhhccccCCCccEEEcCCCCchhhHHHHHHHHHHHhccC
Q 027528 82 IATVLDQYSKFVKPAFDDFILPTKKYADIIIPRGGDNHVAIDLIVQHIRTKLGQH 136 (222)
Q Consensus 82 ~~~~~~~~~~~~~p~~~~~i~p~~~~ADlvi~~~~~~~~~~~~~~~~i~~~l~~~ 136 (222)
.++++++|.+.+.|+|..|++|.+..||+||+++.+|..+++.+.++|...+.++
T Consensus 155 ~e~~~~~~~~~~~~~~~~~i~~~~~~AD~vI~~~~~~~~~~~~l~~~i~~~~~~~ 209 (209)
T PRK05480 155 LESVINQYLSTVRPMHLQFIEPSKRYADIIIPEGGKNRVAIDILKAKIRQLLEKN 209 (209)
T ss_pred HHHHHHHHHHhhhhhHHhhccHhhcceeEEecCCCcchHHHHHHHHHHHHHhhcC
Confidence 9999999999999999999999999999999998888889999999999887653
No 8
>cd02025 PanK Pantothenate kinase (PanK) catalyzes the phosphorylation of pantothenic acid to form 4'-phosphopantothenic, which is the first of five steps in coenzyme A (CoA) biosynthetic pathway. The reaction carried out by this enzyme is a key regulatory point in CoA biosynthesis.
Probab=99.87 E-value=7.9e-23 Score=172.63 Aligned_cols=119 Identities=24% Similarity=0.460 Sum_probs=100.1
Q ss_pred CccccCC-CceeecccccccCccCCCCeeEeCCCcEEEEeccccCCChh-----hhccCCeEEEEECCHHHH---HHHHH
Q 027528 1 MEKLRHG-QAVDIPNYDFKSYKNNVFPARRVNPSDVILLEGILVFHDSR-----VRELMNMKIFVDTDADVR---LARRI 71 (222)
Q Consensus 1 l~~Lk~g-~~v~~P~YD~~~~~r~~~~~~~v~~~~vvIvEGi~~l~~~~-----l~~~~D~~Ifvd~d~d~r---l~Rri 71 (222)
|+.|++| +.+.+|.|||.++++..+....+.+.+||||||+|+|++++ +++++|++||||+|.+++ +.||.
T Consensus 71 L~~l~~g~~~v~~P~yd~~~~~~~~~~~~~~~~~~vvIvEG~~~l~~~~~~~~~l~~~~D~~ifvd~~~~~~~~rl~~R~ 150 (220)
T cd02025 71 LKDIKSGKKNVKIPVYSHLTYDVIPGEKQTVDQPDILIIEGLNVLQTGQNPRLFVSDFFDFSIYVDADEDDIEKWYIKRF 150 (220)
T ss_pred HHHHHCCCCcEEccccceeccccCCCCceecCCCCEEEECCchhcCCcccchhhHHHhCCeEEEEECCHHHHHHHHHHHH
Confidence 3567884 78999999999999854434447889999999999999766 999999999999999996 55666
Q ss_pred hhcccccCCCHHHHHH----------------HHHhccccchhhhccccCCCccEEEcCCCCch
Q 027528 72 RRDTVEKGRDIATVLD----------------QYSKFVKPAFDDFILPTKKYADIIIPRGGDNH 119 (222)
Q Consensus 72 ~RD~~~rg~~~~~~~~----------------~~~~~~~p~~~~~i~p~~~~ADlvi~~~~~~~ 119 (222)
.||+.++|+++.+++. +|++.++|++.+||.|++.+||+||+.++++.
T Consensus 151 ~r~~~~~~r~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~i~p~~~~AD~ii~~~~~~~ 214 (220)
T cd02025 151 LKLRETAFSDPDSYFHRYAKMSEEEAIAFAREVWKNINLKNLRENILPTRNRADLILEKGADHS 214 (220)
T ss_pred HHHHHHHHhCchhhhhcccCCCHHHHHHHHHHHHHHcCHHHHhhhccCCccceEEEEEeCCCCc
Confidence 6677788888886664 38889999999999999999999999877764
No 9
>TIGR00235 udk uridine kinase. Model contains a number of longer eukaryotic proteins and starts bringing in phosphoribulokinase hits at scores of 160 and below
Probab=99.87 E-value=4.3e-22 Score=166.07 Aligned_cols=132 Identities=45% Similarity=0.868 Sum_probs=122.4
Q ss_pred CccccCCCceeecccccccCccCCCCeeEeCCCcEEEEeccccCCChhhhccCCeEEEEECCHHHHHHHHHhhcccccCC
Q 027528 1 MEKLRHGQAVDIPNYDFKSYKNNVFPARRVNPSDVILLEGILVFHDSRVRELMNMKIFVDTDADVRLARRIRRDTVEKGR 80 (222)
Q Consensus 1 l~~Lk~g~~v~~P~YD~~~~~r~~~~~~~v~~~~vvIvEGi~~l~~~~l~~~~D~~Ifvd~d~d~rl~Rri~RD~~~rg~ 80 (222)
|+.|+.|+.+.+|.|||.++++ ..+...+++.+++|+||+|+++.+.+++.+|.+|||++|.++++.|++.||...||+
T Consensus 75 l~~l~~g~~v~~p~yd~~~~~~-~~~~~~~~~~~~vIieG~~~~~~~~~~~~~d~~I~v~~~~~~~l~R~~~R~~~~rg~ 153 (207)
T TIGR00235 75 LKNLKNGSPIDVPVYDYVNHTR-PKETVHIEPKDVVILEGIMPLFDERLRDLMDLKIFVDTPLDIRLIRRIERDINERGR 153 (207)
T ss_pred HHHHHCCCCEecccceeecCCC-CCceEEeCCCCEEEEEehhhhchHhHHHhCCEEEEEECChhHHHHHHHHHHHHhhCC
Confidence 3567889999999999999887 566778889999999999998877899999999999999999999999999988999
Q ss_pred CHHHHHHHHHhccccchhhhccccCCCccEEEcCCCCchhhHHHHHHHHHHHh
Q 027528 81 DIATVLDQYSKFVKPAFDDFILPTKKYADIIIPRGGDNHVAIDLIVQHIRTKL 133 (222)
Q Consensus 81 ~~~~~~~~~~~~~~p~~~~~i~p~~~~ADlvi~~~~~~~~~~~~~~~~i~~~l 133 (222)
+.+.+..+|....+|+|..|+.|.+..||+||+++++++.++..+.+.|+..+
T Consensus 154 ~~~~~~~~~~~~~~~~~~~~i~~~~~~Ad~vi~~~~~~~~~~~~~~~~~~~~~ 206 (207)
T TIGR00235 154 SLDSVIDQYRKTVRPMYEQFVEPTKQYADLIIPEGGRNEVAINVLDTKIKHLL 206 (207)
T ss_pred CHHHHHHHHHHhhhhhHHHhCcccccccEEEEcCCCCchHHHHHHHHHHHHhh
Confidence 99999999999999999999999999999999999999999999999998764
No 10
>PLN02348 phosphoribulokinase
Probab=99.87 E-value=2e-22 Score=181.49 Aligned_cols=110 Identities=33% Similarity=0.667 Sum_probs=102.4
Q ss_pred CccccCCCceeecccccccCccCCCCeeEeCCCcEEEEeccccCCChhhhccCCeEEEEECCHHHHHHHHHhhcccccCC
Q 027528 1 MEKLRHGQAVDIPNYDFKSYKNNVFPARRVNPSDVILLEGILVFHDSRVRELMNMKIFVDTDADVRLARRIRRDTVEKGR 80 (222)
Q Consensus 1 l~~Lk~g~~v~~P~YD~~~~~r~~~~~~~v~~~~vvIvEGi~~l~~~~l~~~~D~~Ifvd~d~d~rl~Rri~RD~~~rg~ 80 (222)
|.+|++|+++.+|.|||.++.. .....++|.+||||||+|+++++.+++++|++|||+++.++++.||++||+.+||+
T Consensus 133 L~~Lk~G~~I~~PiYDh~tg~~--~~~e~I~p~~VVIVEGlh~L~~e~lr~l~D~~IyVd~~~dvrl~RRI~RD~~eRG~ 210 (395)
T PLN02348 133 VKALKEGKAVEKPIYNHVTGLL--DPPELIEPPKILVIEGLHPMYDERVRDLLDFSIYLDISDDVKFAWKIQRDMAERGH 210 (395)
T ss_pred HHHHHCCCcEEeeccccCCCCc--CCcEEcCCCcEEEEechhhccCccccccCcEEEEEECCHHHHHHHHHHhhHhhcCC
Confidence 4578999999999999999985 34667889999999999999988999999999999999999999999999999999
Q ss_pred CHHHHHHHHHhccccchhhhccccCCCccEEEc
Q 027528 81 DIATVLDQYSKFVKPAFDDFILPTKKYADIIIP 113 (222)
Q Consensus 81 ~~~~~~~~~~~~~~p~~~~~i~p~~~~ADlvi~ 113 (222)
+.+++.++|.. +.|.|..||.|++.+||+||+
T Consensus 211 S~EeV~~~i~a-r~pd~~~yI~pqk~~ADiVI~ 242 (395)
T PLN02348 211 SLESIKASIEA-RKPDFDAYIDPQKQYADVVIE 242 (395)
T ss_pred CHHHHHHHHHh-cCcchhhhcccccccCCEEEE
Confidence 99999999886 699999999999999999996
No 11
>COG0035 Upp Uracil phosphoribosyltransferase [Nucleotide transport and metabolism]
Probab=99.86 E-value=6.7e-22 Score=163.59 Aligned_cols=78 Identities=28% Similarity=0.444 Sum_probs=74.1
Q ss_pred CceeeeccchhhhhhhhhhhcCCCCchhhhhhHHHHHHHHHHHHhCCCCCeeeEEeCCCCceeEeeeec-CcEeEEEeeC
Q 027528 143 PNLYVIHSTFQIRGMHTLIRDSQTTKHDFVFYSDRLIRLVVEHGLGHLPFTEKQVITPTGAVYTGVDFC-KRLCGVSVIR 221 (222)
Q Consensus 143 ~~v~vl~~~p~~~~~lt~lRd~~t~~~~Fr~~~~~i~~lL~~ea~~~l~~~~~~V~TP~~~~~~g~~~~-~~i~~V~IlR 221 (222)
.++++++ ||+++|++|+|||++|++.+||++++||+++|+|||++++|+++++|+||++ +++|..+. +++|+|||||
T Consensus 2 ~~v~vi~-hpli~~~lt~lRdk~t~~~~Fr~~~~ei~~lL~yEa~~~l~~e~~~ieTP~~-~~~~~~~~~~~i~~V~ILR 79 (210)
T COG0035 2 MNVYVID-HPLVKHKLTILRDKNTGTKEFRELLDEIGRLLAYEATRDLPLEKVEIETPLG-PTEGVQIAGKKIVIVPILR 79 (210)
T ss_pred CceEEeC-cHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHhCcCceeEEEEECCCc-ceeeeeecCCcEEEEEEee
Confidence 5789996 9999999999999999999999999999999999999999999999999999 58999997 5599999999
Q ss_pred C
Q 027528 222 R 222 (222)
Q Consensus 222 A 222 (222)
|
T Consensus 80 A 80 (210)
T COG0035 80 A 80 (210)
T ss_pred c
Confidence 8
No 12
>cd02028 UMPK_like Uridine monophosphate kinase_like (UMPK_like) is a family of proteins highly similar to the uridine monophosphate kinase (UMPK, EC 2.7.1.48), also known as uridine kinase or uridine-cytidine kinase (UCK).
Probab=99.86 E-value=5.6e-22 Score=162.39 Aligned_cols=109 Identities=28% Similarity=0.549 Sum_probs=95.5
Q ss_pred ccccCCCceeecccccccCccCCCCeeEeCCCcEEEEeccccCCChhhhccCCeEEEEECCHHH-HHHHHHhhcccccCC
Q 027528 2 EKLRHGQAVDIPNYDFKSYKNNVFPARRVNPSDVILLEGILVFHDSRVRELMNMKIFVDTDADV-RLARRIRRDTVEKGR 80 (222)
Q Consensus 2 ~~Lk~g~~v~~P~YD~~~~~r~~~~~~~v~~~~vvIvEGi~~l~~~~l~~~~D~~Ifvd~d~d~-rl~Rri~RD~~~rg~ 80 (222)
..|++|+.+.+|.|||.++.+.......+++.+||||||+|+++ +++++++|++|||++|.++ |+.||+.||+.+||+
T Consensus 68 ~~l~~~~~~~~p~yd~~~~~~~~~~~~~~~~~~vIIvEG~~~l~-~~l~~~~d~~I~vd~~~~~~rl~rri~RD~~~rg~ 146 (179)
T cd02028 68 HDLLNGKEVELPIYDFRTGKRRGYRKLKLPPSGVVILEGIYALN-ERLRSLLDIRVAVSGGVHLNRLLRRVVRDIQFRGY 146 (179)
T ss_pred HHHHCCCeeecccceeECCccCCCceEEeCCCCEEEEecHHhcC-HhHHhhcCEEEEEeCCccHHHHHHHHHHhHHhhCC
Confidence 45788999999999999999743336788999999999999996 7999999999999999998 999999999999999
Q ss_pred CHHHHHHHHHhccccchhhhc-cccCCCccEEEc
Q 027528 81 DIATVLDQYSKFVKPAFDDFI-LPTKKYADIIIP 113 (222)
Q Consensus 81 ~~~~~~~~~~~~~~p~~~~~i-~p~~~~ADlvi~ 113 (222)
+.++++.+|. ..|.++.++ .|++..||++++
T Consensus 147 ~~~~~i~~~~--~~~~~~~~~~~~~~~~ad~~~~ 178 (179)
T cd02028 147 SAELTILMWP--SVPSGEEFIIPPLQEAAIVMFN 178 (179)
T ss_pred CHHHHhhhcc--cccCchhhcCCCchhccceecc
Confidence 9999999975 355555555 668999999985
No 13
>TIGR00554 panK_bact pantothenate kinase, bacterial type. Shown to be a homodimer in E. coli. This enzyme catalyzes the rate-limiting step in the biosynthesis of coenzyme A. It is very well conserved from E. coli to B. subtilis, but differs considerably from known eukaryotic forms, described in a separate model.
Probab=99.84 E-value=2.3e-21 Score=169.70 Aligned_cols=120 Identities=23% Similarity=0.378 Sum_probs=99.6
Q ss_pred CccccCCCc-eeecccccccCccCCCCeeEeCCCcEEEEeccccCCChh----------hhccCCeEEEEECCHHHHHHH
Q 027528 1 MEKLRHGQA-VDIPNYDFKSYKNNVFPARRVNPSDVILLEGILVFHDSR----------VRELMNMKIFVDTDADVRLAR 69 (222)
Q Consensus 1 l~~Lk~g~~-v~~P~YD~~~~~r~~~~~~~v~~~~vvIvEGi~~l~~~~----------l~~~~D~~Ifvd~d~d~rl~R 69 (222)
|++|++|++ +.+|.|||.++++..+....+.+.+||||||+|+|++++ +++++|++||||+|.++++.|
T Consensus 134 L~~Lk~g~~~v~~P~Yd~~~~d~~~~~~~~v~~~dIiIvEGi~vL~~~~~~~~~~~~~~~~d~~D~~IyvDa~~d~~~~w 213 (290)
T TIGR00554 134 LSDLKSGKPNVTAPVYSHLTYDVIPDGFKVVVQPDILILEGLNVLQSGMDYPHDPHHVFVSDFVDFSIYVDAEEDLLQTW 213 (290)
T ss_pred HHHHHCCCCceecCccccccCCcCCCCeEEcCCCCEEEECCchHhCCchhcccccchHHHHHhCCEEEEEECCHHHHHHH
Confidence 356888985 999999999999865555667899999999999998766 479999999999999999999
Q ss_pred HHhhcccc--c-------------CCCHHHHH----HHHHhccccchhhhccccCCCccEEEcCCCCchh
Q 027528 70 RIRRDTVE--K-------------GRDIATVL----DQYSKFVKPAFDDFILPTKKYADIIIPRGGDNHV 120 (222)
Q Consensus 70 ri~RD~~~--r-------------g~~~~~~~----~~~~~~~~p~~~~~i~p~~~~ADlvi~~~~~~~~ 120 (222)
++.|+... + |.+.+++. +.|.+...|++.+||.|++.+||+||+.+.++.+
T Consensus 214 ~i~R~~~l~~~~~~~~~s~~~~~~~~~~~ea~~~~~~~w~~~~~~nl~~~I~Ptr~rAdlIl~~~~~h~i 283 (290)
T TIGR00554 214 YINRFLKFREGAFTDPDSYFHNYAKLSKEEAIKTAMTIWKEINWLNLKQNILPTRERASLILTKGANHAV 283 (290)
T ss_pred HHHHHHHHHHhhhcCcchhhhhhccCCHHHHHHHHHHHHHHcchhhHHhhCCCCcccccEEEecCCCCcE
Confidence 99996432 2 34443333 4579999999999999999999999998877643
No 14
>PRK05439 pantothenate kinase; Provisional
Probab=99.84 E-value=4.1e-21 Score=169.33 Aligned_cols=120 Identities=23% Similarity=0.420 Sum_probs=102.5
Q ss_pred CccccCCCc-eeecccccccCccCCCCeeEeCCCcEEEEeccccCCChhh------hccCCeEEEEECCHHHHHHHHHhh
Q 027528 1 MEKLRHGQA-VDIPNYDFKSYKNNVFPARRVNPSDVILLEGILVFHDSRV------RELMNMKIFVDTDADVRLARRIRR 73 (222)
Q Consensus 1 l~~Lk~g~~-v~~P~YD~~~~~r~~~~~~~v~~~~vvIvEGi~~l~~~~l------~~~~D~~Ifvd~d~d~rl~Rri~R 73 (222)
|.+|++|+. +.+|.|||.++++..++...+.+.+||||||+|+|+.++. ++++|++||||+|.+++..|++.|
T Consensus 158 L~~Lk~G~~~v~~P~Yd~~~~d~~~~~~~~v~~~dIvIVEGi~~L~~~~~~~~~~l~d~~D~~IfVda~~~~~~~w~i~R 237 (311)
T PRK05439 158 LSDVKSGKPNVTAPVYSHLIYDIVPGEKQTVDQPDILIVEGLNVLQTGQNHHRLFVSDFFDFSIYVDADEDLIEKWYIER 237 (311)
T ss_pred HHHHHcCCCeEEeeeEEeecCCcCCCceEEeCCCCEEEEcCchhccCcccccchhhHHhCCEEEEEECCHHHHHHHHHHH
Confidence 457889986 9999999999998545667889999999999999977666 999999999999999999999988
Q ss_pred cccc---------------cCCCHHHH----HHHHHhccccchhhhccccCCCccEEEcCCCCchh
Q 027528 74 DTVE---------------KGRDIATV----LDQYSKFVKPAFDDFILPTKKYADIIIPRGGDNHV 120 (222)
Q Consensus 74 D~~~---------------rg~~~~~~----~~~~~~~~~p~~~~~i~p~~~~ADlvi~~~~~~~~ 120 (222)
+... +|.+.+++ .+.|.+.+.||+.+||.|++.+||+||+.+.++.+
T Consensus 238 ~~~lr~~~~rdp~s~~~~~~~~s~~~a~~~a~~~w~~~~~pn~~~~I~Ptk~~ADlIi~~~~~h~i 303 (311)
T PRK05439 238 FLKLRETAFSDPDSYFHRYAKLSEEEAIAIARQIWDEINLPNLEENILPTRERADLILHKGADHSI 303 (311)
T ss_pred HHHHHHhhhcCcchhhhhhccCCHHHHHHHHHHHHHhcchhhHHHhccCCCcCCCEEEeCCCCCce
Confidence 8752 35555544 45678899999999999999999999998877754
No 15
>cd02023 UMPK Uridine monophosphate kinase (UMPK, EC 2.7.1.48), also known as uridine kinase or uridine-cytidine kinase (UCK), catalyzes the reversible phosphoryl transfer from ATP to uridine or cytidine to yield UMP or CMP. In the primidine nucleotide-salvage pathway, this enzyme combined with nucleoside diphosphate kinases further phosphorylates UMP and CMP to form UTP and CTP. This kinase also catalyzes the phosphorylation of several cytotoxic ribonucleoside analogs such as 5-flurrouridine and cyclopentenyl-cytidine.
Probab=99.83 E-value=1.8e-20 Score=154.85 Aligned_cols=129 Identities=62% Similarity=1.037 Sum_probs=117.6
Q ss_pred ccccCCCceeecccccccCccCCCCeeEeCCCcEEEEeccccCCChhhhccCCeEEEEECCHHHHHHHHHhhcccccCCC
Q 027528 2 EKLRHGQAVDIPNYDFKSYKNNVFPARRVNPSDVILLEGILVFHDSRVRELMNMKIFVDTDADVRLARRIRRDTVEKGRD 81 (222)
Q Consensus 2 ~~Lk~g~~v~~P~YD~~~~~r~~~~~~~v~~~~vvIvEGi~~l~~~~l~~~~D~~Ifvd~d~d~rl~Rri~RD~~~rg~~ 81 (222)
..|+.|+.+..|.||+.++.+. .....+.+.+++|+||.+++.++.+.+++|++|||++|.++++.|++.||..+||++
T Consensus 69 ~~l~~~~~~~~p~~d~~~~~~~-~~~~~i~~~~~vI~eg~~~~~~~~~~~~~d~~i~v~~~~~~~~~R~~~Rd~~~rg~~ 147 (198)
T cd02023 69 QDLKNGKSVEIPVYDFKTHSRL-KETVTVYPADVIILEGILALYDKELRDLMDLKIFVDTDADVRLIRRIERDIVERGRD 147 (198)
T ss_pred HHHHCCCCEeccccccccCccc-CCceecCCCCEEEEechhhccchhHHhhcCeEEEEECChhHHHHHHHHHHhhhcCCC
Confidence 4577889999999999999873 445577889999999999998788899999999999999999999999999889999
Q ss_pred HHHHHHHHHhccccchhhhccccCCCccEEEcCCCCchhhHHHHHHHHHH
Q 027528 82 IATVLDQYSKFVKPAFDDFILPTKKYADIIIPRGGDNHVAIDLIVQHIRT 131 (222)
Q Consensus 82 ~~~~~~~~~~~~~p~~~~~i~p~~~~ADlvi~~~~~~~~~~~~~~~~i~~ 131 (222)
.+++.++|.....|+|..|++|.+..||+||+++.++..++..+.++++.
T Consensus 148 ~~~~~~~~~~~~~~~~~~~i~~~~~~aD~ii~~~~~~~~~~~~~~~~~~~ 197 (198)
T cd02023 148 LESVINQYLKFVKPMHEQFIEPTKRYADVIIPRGGDNHVAIDLIVQHIKS 197 (198)
T ss_pred HHHHHHHHHHhhhhhHHHhCccchhceeEEECCCCCccHHHHHHHHHHhc
Confidence 99999999999999999999999999999999988888899988888764
No 16
>PRK15453 phosphoribulokinase; Provisional
Probab=99.83 E-value=1.6e-20 Score=162.79 Aligned_cols=113 Identities=19% Similarity=0.267 Sum_probs=96.1
Q ss_pred CccccCCCceeecccccc-----cCccCCC---CeeEe-CCCcEEEEeccccCC---ChhhhccCCeEEEEECCHHHHHH
Q 027528 1 MEKLRHGQAVDIPNYDFK-----SYKNNVF---PARRV-NPSDVILLEGILVFH---DSRVRELMNMKIFVDTDADVRLA 68 (222)
Q Consensus 1 l~~Lk~g~~v~~P~YD~~-----~~~r~~~---~~~~v-~~~~vvIvEGi~~l~---~~~l~~~~D~~Ifvd~d~d~rl~ 68 (222)
|+.|++|+.+..|.|+|. .+.+..+ ++..+ ++++|||+||+|+++ +..+++++|+||||+++.++|+.
T Consensus 83 l~~l~~~~~g~~~~Y~h~f~~a~~~~~~~gtft~~e~i~~p~dvIivEGLh~~~~~~~~~lr~~~DlkIfVdp~~dlr~i 162 (290)
T PRK15453 83 FREYGETGTGKTRKYLHTDDEAVPYNQVPGTFTPWEPLPEGTDLLFYEGLHGGVVTDQVDVAQHVDLLIGVVPIVNLEWI 162 (290)
T ss_pred HHHHhcCCCcceeeccccccccccCCCCCCccCCceEecCCCcEEEEeccccccccccHHHHHhCCeeEeeCCcHhHHHH
Confidence 356788999999999743 2444222 23355 579999999999984 36799999999999999999999
Q ss_pred HHHhhcccccCCCHHHHHHHHHhccccchhhhccccCCCccEEEcC
Q 027528 69 RRIRRDTVEKGRDIATVLDQYSKFVKPAFDDFILPTKKYADIIIPR 114 (222)
Q Consensus 69 Rri~RD~~~rg~~~~~~~~~~~~~~~p~~~~~i~p~~~~ADlvi~~ 114 (222)
||+.||+.+||++.++++++|.++ +|.|.+||.|++.+||+++..
T Consensus 163 rRI~RD~~ERGrs~EsVi~qilrr-mPdy~~yI~PQ~~~tdInfqr 207 (290)
T PRK15453 163 QKIHRDTSERGYSREAVMDTILRR-MPDYINYITPQFSRTHINFQR 207 (290)
T ss_pred HHHHhhhHhhCCCHHHHHHHHHHh-CChHhhhCCCCcccCcEEEEe
Confidence 999999999999999999999997 599999999999999998854
No 17
>PLN02541 uracil phosphoribosyltransferase
Probab=99.81 E-value=8.3e-20 Score=155.90 Aligned_cols=78 Identities=22% Similarity=0.199 Sum_probs=69.4
Q ss_pred ceeeeccchhhhhhhhhhhcCCCCchhhhhhHHHHHHHHHHHHhCC-CCCeeeEEeCCCCceeEeeeec--CcEeEEEee
Q 027528 144 NLYVIHSTFQIRGMHTLIRDSQTTKHDFVFYSDRLIRLVVEHGLGH-LPFTEKQVITPTGAVYTGVDFC--KRLCGVSVI 220 (222)
Q Consensus 144 ~v~vl~~~p~~~~~lt~lRd~~t~~~~Fr~~~~~i~~lL~~ea~~~-l~~~~~~V~TP~~~~~~g~~~~--~~i~~V~Il 220 (222)
..+++.+||++++++|+|||++|++.+||++++||+++|+|||+++ +|+++++|+||+|. +.|..+. +++|+||||
T Consensus 32 ~~~~~~~~p~i~~~lt~LRd~~T~~~~Fr~~~~rl~~lL~~Ea~~~~lp~~~~~V~TP~g~-~~~~~~~~~~~i~~V~IL 110 (244)
T PLN02541 32 MLVFVPPHPLIKHWLSVLRNEQTPPPIFRSAMAELGRLLIYEASRDWLPTMTGEVQTPMGV-ADVEFIDPREPVAVVPIL 110 (244)
T ss_pred ceEEecCChHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHhccCCccceEEECCCCe-EEEEeecCCCcEEEEeEe
Confidence 3445557999999999999999999999999999999999999988 99999999999995 5566565 459999999
Q ss_pred CC
Q 027528 221 RR 222 (222)
Q Consensus 221 RA 222 (222)
||
T Consensus 111 RA 112 (244)
T PLN02541 111 RA 112 (244)
T ss_pred CC
Confidence 98
No 18
>TIGR01091 upp uracil phosphoribosyltransferase. that includes uracil phosphoribosyltransferase, uridine kinases, and other, uncharacterized proteins.
Probab=99.81 E-value=8.3e-20 Score=152.93 Aligned_cols=77 Identities=29% Similarity=0.336 Sum_probs=72.1
Q ss_pred ceeeeccchhhhhhhhhhhcCCCCchhhhhhHHHHHHHHHHHHhCCCCCeeeEEeCCCCceeEeeeec-CcEeEEEeeCC
Q 027528 144 NLYVIHSTFQIRGMHTLIRDSQTTKHDFVFYSDRLIRLVVEHGLGHLPFTEKQVITPTGAVYTGVDFC-KRLCGVSVIRR 222 (222)
Q Consensus 144 ~v~vl~~~p~~~~~lt~lRd~~t~~~~Fr~~~~~i~~lL~~ea~~~l~~~~~~V~TP~~~~~~g~~~~-~~i~~V~IlRA 222 (222)
|||+++ ||++++++|+|||++|++.+||++++||+++|+|||++++|+++.+|+||+|. +.|..+. +++|+||||||
T Consensus 1 ~v~~~~-~p~~~~~lt~lRd~~t~~~~Fr~~~~rl~~~l~~ea~~~l~~~~~~v~tp~g~-~~~~~~~~~~i~~V~ILrg 78 (207)
T TIGR01091 1 MVVVIE-HPLIKHKLTLLRDKNTDTKEFRELLRELGRLLAYEATRDLELEEVEVETPLGE-TEGGRILGKKIVLVPILRA 78 (207)
T ss_pred CeEecC-CHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHhccCCceeEEEECCCCc-EEEeEecCCcEEEEEEeCC
Confidence 588996 99999999999999999999999999999999999999999999999999997 5677776 67999999997
No 19
>PRK00129 upp uracil phosphoribosyltransferase; Reviewed
Probab=99.81 E-value=8.3e-20 Score=153.11 Aligned_cols=78 Identities=29% Similarity=0.384 Sum_probs=74.1
Q ss_pred CceeeeccchhhhhhhhhhhcCCCCchhhhhhHHHHHHHHHHHHhCCCCCeeeEEeCCCCceeEeeeec-CcEeEEEeeC
Q 027528 143 PNLYVIHSTFQIRGMHTLIRDSQTTKHDFVFYSDRLIRLVVEHGLGHLPFTEKQVITPTGAVYTGVDFC-KRLCGVSVIR 221 (222)
Q Consensus 143 ~~v~vl~~~p~~~~~lt~lRd~~t~~~~Fr~~~~~i~~lL~~ea~~~l~~~~~~V~TP~~~~~~g~~~~-~~i~~V~IlR 221 (222)
+++|+++ ||++++++|+|||++|++.+||++++||+++|+|||++++|+++.+|+||+| .++|..++ +++|+|||+|
T Consensus 2 ~~v~~~~-~p~~~~~lt~lRd~~t~~~~fr~~~~rl~~~l~~eal~~l~~~~~~v~tp~g-~~~g~~~~~~~~vvV~Ilr 79 (209)
T PRK00129 2 MKVHVVD-HPLIQHKLTLLRDKNTSTKRFRELLEELGRLLAYEATRDLPLEEVEIETPLG-KTTGKRIAGKKLVIVPILR 79 (209)
T ss_pred CceEecC-CHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHhcccceeEEEEECCCC-cEEEEEecCCeEEEEEEeC
Confidence 3799997 9999999999999999999999999999999999999999999999999999 58999987 6799999999
Q ss_pred C
Q 027528 222 R 222 (222)
Q Consensus 222 A 222 (222)
|
T Consensus 80 g 80 (209)
T PRK00129 80 A 80 (209)
T ss_pred C
Confidence 7
No 20
>cd02026 PRK Phosphoribulokinase (PRK) is an enzyme involved in the Benson-Calvin cycle in chloroplasts or photosynthetic prokaryotes. This enzyme catalyzes the phosphorylation of D-ribulose 5-phosphate to form D-ribulose 1, 5-biphosphate, using ATP and NADPH produced by the primary reactions of photosynthesis.
Probab=99.80 E-value=1.2e-19 Score=157.96 Aligned_cols=110 Identities=33% Similarity=0.668 Sum_probs=101.0
Q ss_pred ccccCCCceeecccccccCccCCCCeeEeCCCcEEEEeccccCCChhhhccCCeEEEEECCHHHHHHHHHhhcccccCCC
Q 027528 2 EKLRHGQAVDIPNYDFKSYKNNVFPARRVNPSDVILLEGILVFHDSRVRELMNMKIFVDTDADVRLARRIRRDTVEKGRD 81 (222)
Q Consensus 2 ~~Lk~g~~v~~P~YD~~~~~r~~~~~~~v~~~~vvIvEGi~~l~~~~l~~~~D~~Ifvd~d~d~rl~Rri~RD~~~rg~~ 81 (222)
+.|++|+++..|.|||.++.. .....+.+.++|||||+|+++.+.+++++|++|||+++.++++.|+++||+.++|++
T Consensus 67 ~~Lk~g~~i~~P~y~~~~~~~--~~~~~i~~~~ivIvEG~~~l~~~~l~~~~D~~I~vd~~~e~r~~r~i~Rd~~rrG~s 144 (273)
T cd02026 67 KALKEGQAIEKPIYNHVTGLI--DPPELIKPTKIVVIEGLHPLYDERVRELLDFSVYLDISDEVKFAWKIQRDMAERGHS 144 (273)
T ss_pred HHHHCCCCcccccccccCCCc--CCcEEcCCCCEEEEeeehhhCchhhhhhccEEEEEECChhHHHHHHHHHHHHHhCCC
Confidence 568889999999999999874 345667889999999999998889999999999999999999999999999999999
Q ss_pred HHHHHHHHHhccccchhhhccccCCCccEEEcC
Q 027528 82 IATVLDQYSKFVKPAFDDFILPTKKYADIIIPR 114 (222)
Q Consensus 82 ~~~~~~~~~~~~~p~~~~~i~p~~~~ADlvi~~ 114 (222)
.++++++|.. ..|.+.+||.|++.+||+||..
T Consensus 145 ~e~v~~~i~~-r~~~~~~~I~P~~~~ADvVI~~ 176 (273)
T cd02026 145 LEDVLASIEA-RKPDFEAYIDPQKQYADVVIQV 176 (273)
T ss_pred HHHHHHHHHh-hchhHHHHhccccccCcEEEEc
Confidence 9999999986 6999999999999999999964
No 21
>PRK07429 phosphoribulokinase; Provisional
Probab=99.78 E-value=5.8e-19 Score=157.07 Aligned_cols=111 Identities=29% Similarity=0.606 Sum_probs=101.4
Q ss_pred ccccCCCceeecccccccCccCCCCeeEeCCCcEEEEeccccCCChhhhccCCeEEEEECCHHHHHHHHHhhcccccCCC
Q 027528 2 EKLRHGQAVDIPNYDFKSYKNNVFPARRVNPSDVILLEGILVFHDSRVRELMNMKIFVDTDADVRLARRIRRDTVEKGRD 81 (222)
Q Consensus 2 ~~Lk~g~~v~~P~YD~~~~~r~~~~~~~v~~~~vvIvEGi~~l~~~~l~~~~D~~Ifvd~d~d~rl~Rri~RD~~~rg~~ 81 (222)
+.|++|+++..|.||+.++.. .....+.+.++||+||+|+++.+.+++++|++|||++|.++++.|+++||..++|++
T Consensus 76 ~~L~~g~~I~~P~yd~~~g~~--~~~~~i~p~~iVIvEG~~~l~~~~lr~~~D~~I~Vda~~evr~~Rri~Rd~~rrG~s 153 (327)
T PRK07429 76 KALKTGQPILKPIYNHETGTF--DPPEYIEPNKIVVVEGLHPLYDERVRELYDFKVYLDPPEEVKIAWKIKRDMAKRGHT 153 (327)
T ss_pred HHHHCCCceecceeecCCCCc--CCcEecCCCcEEEEechhhcCcHhHHhhCCEEEEEECCHHHHHHHHHHHHHhhcCCC
Confidence 567889999999999999875 345678889999999999988788999999999999999999999999999999999
Q ss_pred HHHHHHHHHhccccchhhhccccCCCccEEEcCC
Q 027528 82 IATVLDQYSKFVKPAFDDFILPTKKYADIIIPRG 115 (222)
Q Consensus 82 ~~~~~~~~~~~~~p~~~~~i~p~~~~ADlvi~~~ 115 (222)
.+++.++|.. .+|.+..||.|++.+||+||.+.
T Consensus 154 ~eei~~~i~~-r~pd~~~yI~P~k~~ADiVI~~~ 186 (327)
T PRK07429 154 YEQVLAEIEA-REPDFEAYIRPQRQWADVVIQFL 186 (327)
T ss_pred HHHHHHHHHH-hCccHhhhhcccccCCCEEEEcC
Confidence 9999998876 69999999999999999999753
No 22
>PF14681 UPRTase: Uracil phosphoribosyltransferase; PDB: 1V9S_B 1UPF_A 1UPU_D 1JLR_B 1BD4_A 1BD3_C 1JLS_D 1XTV_C 1XTU_H 3G6W_C ....
Probab=99.77 E-value=5.9e-19 Score=147.80 Aligned_cols=73 Identities=37% Similarity=0.631 Sum_probs=65.8
Q ss_pred cchhhhhhhhhhhcCCCCchhhhhhHHHHHHHHHHHHhCC-CCCeeeEEeCCCCceeEeeeec-CcEeEEEeeCC
Q 027528 150 STFQIRGMHTLIRDSQTTKHDFVFYSDRLIRLVVEHGLGH-LPFTEKQVITPTGAVYTGVDFC-KRLCGVSVIRR 222 (222)
Q Consensus 150 ~~p~~~~~lt~lRd~~t~~~~Fr~~~~~i~~lL~~ea~~~-l~~~~~~V~TP~~~~~~g~~~~-~~i~~V~IlRA 222 (222)
+||++++++|+|||++|++.+||++++||+++|+|||+++ +|+++.+|+||+|..+.|.... +++|+||||||
T Consensus 3 ~~p~~~~~lt~LRd~~t~~~~Fr~~~~rl~~lL~~eal~~~l~~~~~~v~Tp~g~~~~g~~~~~~~i~~V~IlRa 77 (207)
T PF14681_consen 3 QHPLLRHLLTILRDRNTSRAEFRRYLDRLGRLLAEEALADWLPYEEVEVETPLGHKYGGVILNEDKICIVPILRA 77 (207)
T ss_dssp B-HHHHHHHHHHHSTTS-HHHHHHHHHHHHHHHHHHHTTT-S-EEEEEEEESSSEEEEEEECSSGCEEEEEETTT
T ss_pred CCHHHHHHHHHHhCCCCChHHHHHHHHHHHHHHHHHHHhccccceeEEEEcCCCcEEEEEEeecccEEEEEEeCC
Confidence 5999999999999999999999999999999999999998 9999999999999988786655 48999999998
No 23
>KOG1017 consensus Predicted uracil phosphoribosyltransferase [General function prediction only]
Probab=99.66 E-value=6.6e-17 Score=132.06 Aligned_cols=82 Identities=45% Similarity=0.751 Sum_probs=76.6
Q ss_pred cCCceeeeccchhhhhhhhhhhcCCCCchhhhhhHHHHHHHHHHHHhCCCCCeeeEEeCCCCceeEeeeecCcEeEEEee
Q 027528 141 IYPNLYVIHSTFQIRGMHTLIRDSQTTKHDFVFYSDRLIRLVVEHGLGHLPFTEKQVITPTGAVYTGVDFCKRLCGVSVI 220 (222)
Q Consensus 141 ~~~~v~vl~~~p~~~~~lt~lRd~~t~~~~Fr~~~~~i~~lL~~ea~~~l~~~~~~V~TP~~~~~~g~~~~~~i~~V~Il 220 (222)
...|++.++=+.++..++|++|||+|+..||.|++||++|+.++|.+++|||++++|+||.|-.|+|.++...-|+|||+
T Consensus 64 ~G~~lkll~~n~q~~el~ti~Rdkst~rsDF~F~ADRLiRLViEE~LNqLPytec~VtTPTG~kYEGikf~~GNCGVSi~ 143 (267)
T KOG1017|consen 64 YGSNLKLLECNSQVAELLTILRDKSTNRSDFVFNADRLIRLVIEECLNQLPYTECTVTTPTGFKYEGIKFNRGNCGVSIC 143 (267)
T ss_pred hhcccchhhhHHHHHHHHHHHhhccCcccceeecHHHHHHHHHHHHhhcCCccceeeecCCcceeeceeecCCCcceEEE
Confidence 33466677668899999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CC
Q 027528 221 RR 222 (222)
Q Consensus 221 RA 222 (222)
|+
T Consensus 144 RS 145 (267)
T KOG1017|consen 144 RS 145 (267)
T ss_pred ec
Confidence 96
No 24
>PRK09270 nucleoside triphosphate hydrolase domain-containing protein; Reviewed
Probab=99.56 E-value=1.1e-14 Score=123.22 Aligned_cols=115 Identities=23% Similarity=0.328 Sum_probs=98.8
Q ss_pred ccccCCC-ceeecccccccCccCCCCeeEeC-CCcEEEEeccccCCCh----hhhccCCeEEEEECCHHHHHHHHHhhcc
Q 027528 2 EKLRHGQ-AVDIPNYDFKSYKNNVFPARRVN-PSDVILLEGILVFHDS----RVRELMNMKIFVDTDADVRLARRIRRDT 75 (222)
Q Consensus 2 ~~Lk~g~-~v~~P~YD~~~~~r~~~~~~~v~-~~~vvIvEGi~~l~~~----~l~~~~D~~Ifvd~d~d~rl~Rri~RD~ 75 (222)
..|+.|+ .+.+|.||+..+.+ ..+...+. ..++||+||.+++++. .+++.+|++||+++|.++++.|...|+.
T Consensus 105 ~~l~~~~~~i~~P~yD~~~~~~-~~~~~~~~~~~~ivIvEG~~~l~~~~~~~~l~~~~D~vi~v~~~~~~~~~R~~~R~~ 183 (229)
T PRK09270 105 RRLRAGDDEVYWPVFDRSLEDP-VADAIVVPPTARLVIVEGNYLLLDEEPWRRLAGLFDFTIFLDAPAEVLRERLVARKL 183 (229)
T ss_pred HHHHcCCCceecccCCcccCCC-CCCceEecCCCCEEEEcCcceeeccccHHHHHhhCCEEEEEECCHHHHHHHHHHHHH
Confidence 4567776 89999999999887 45555664 5899999999998753 6778999999999999999999999985
Q ss_pred cccCCCHHHHHHHHHhccccchhhhccccCCCccEEEcCCCCch
Q 027528 76 VEKGRDIATVLDQYSKFVKPAFDDFILPTKKYADIIIPRGGDNH 119 (222)
Q Consensus 76 ~~rg~~~~~~~~~~~~~~~p~~~~~i~p~~~~ADlvi~~~~~~~ 119 (222)
++|++.+++.+++..+.+|++ +|+.|.+..||+||+|++.++
T Consensus 184 -~~g~s~~~~~~~~~~~~~~~~-~~i~~~~~~ad~vI~n~~~~~ 225 (229)
T PRK09270 184 -AGGLSPEAAEAFVLRNDGPNA-RLVLETSRPADLVLEMTATGE 225 (229)
T ss_pred -hcCCCHHHHHHHHHhcChHHH-HHHHhcCCCCCEEEEecCCcc
Confidence 689999999999988788987 799999999999999876654
No 25
>PRK07667 uridine kinase; Provisional
Probab=99.53 E-value=1.6e-14 Score=119.44 Aligned_cols=102 Identities=18% Similarity=0.355 Sum_probs=82.8
Q ss_pred ccccCCCceeecccccccCccCCCCeeEeCCCcEEEEeccccCCChhhhccCCeEEEEECCHHHHHHHHHhhcccccCCC
Q 027528 2 EKLRHGQAVDIPNYDFKSYKNNVFPARRVNPSDVILLEGILVFHDSRVRELMNMKIFVDTDADVRLARRIRRDTVEKGRD 81 (222)
Q Consensus 2 ~~Lk~g~~v~~P~YD~~~~~r~~~~~~~v~~~~vvIvEGi~~l~~~~l~~~~D~~Ifvd~d~d~rl~Rri~RD~~~rg~~ 81 (222)
..|++|+.+..|.||+.++.. ......+++.++||+||+|++. +.+++++|.+|||++|.++++.|.+.|+ |.+
T Consensus 90 ~~L~~~~~i~~P~~d~~~~~~-~~~~~~~~~~~vvIvEG~~l~~-~~~~~~~d~~v~V~~~~~~~~~R~~~r~----~~~ 163 (193)
T PRK07667 90 RKLQNETKLTLPFYHDETDTC-EMKKVQIPIVGVIVIEGVFLQR-KEWRDFFHYMVYLDCPRETRFLRESEET----QKN 163 (193)
T ss_pred HhhcCCCeEEEeeeccccccc-cccceecCCCCEEEEEehhhhh-hhHHhhceEEEEEECCHHHHHHHHhccc----HhH
Confidence 457789999999999999775 3444567788999999999764 7799999999999999999999999986 233
Q ss_pred HHHHHHHHHhccccchhhhccc--cCCCccEEEc
Q 027528 82 IATVLDQYSKFVKPAFDDFILP--TKKYADIIIP 113 (222)
Q Consensus 82 ~~~~~~~~~~~~~p~~~~~i~p--~~~~ADlvi~ 113 (222)
. .+|.+++.|++..|+.. .+..||+||+
T Consensus 164 ~----~~~~~r~~~a~~~y~~~~~~~~~ad~i~~ 193 (193)
T PRK07667 164 L----SKFKNRYWKAEDYYLETESPKDRADLVIK 193 (193)
T ss_pred H----HHHHHHhHHHHHHHHhhcChHhhCcEEeC
Confidence 3 45566667888888664 3888999984
No 26
>PRK06696 uridine kinase; Validated
Probab=99.52 E-value=2.8e-14 Score=120.42 Aligned_cols=106 Identities=26% Similarity=0.392 Sum_probs=89.8
Q ss_pred ceeecccccccCccCCCCeeEeCCCcEEEEeccccCCChhhhccCCeEEEEECCHHHHHHHHHhhcccccCCCHHHHHHH
Q 027528 9 AVDIPNYDFKSYKNNVFPARRVNPSDVILLEGILVFHDSRVRELMNMKIFVDTDADVRLARRIRRDTVEKGRDIATVLDQ 88 (222)
Q Consensus 9 ~v~~P~YD~~~~~r~~~~~~~v~~~~vvIvEGi~~l~~~~l~~~~D~~Ifvd~d~d~rl~Rri~RD~~~rg~~~~~~~~~ 88 (222)
.+..|.||+.++.........+++.++||+||.|++. +.+++++|++|||++|.++++.|++.||...+|+ .+++...
T Consensus 104 ~~~~~~~d~~~~~~~~~~~~~~~~~~vviveg~~l~~-~~~~~~~d~~i~v~~~~e~~~~R~~~Rd~~~~g~-~~~~~~~ 181 (223)
T PRK06696 104 QYRTASHDLKTDIPVHNPPLLAAPNAVLIVDGTFLLR-PELRDLWDYKIFLDTDFEVSRRRGAKRDTEAFGS-YEEAEKM 181 (223)
T ss_pred eEeeeeeccccCcccCCCceecCCCCEEEEecHHHhh-hhHHhhCCEEEEEECCHHHHHHHHHHhhhhhhCC-chHHHHH
Confidence 5888899999987532345556788999999999875 7899999999999999999999999999888885 5667777
Q ss_pred HHhccccchhhhcccc--CCCccEEEcCCC
Q 027528 89 YSKFVKPAFDDFILPT--KKYADIIIPRGG 116 (222)
Q Consensus 89 ~~~~~~p~~~~~i~p~--~~~ADlvi~~~~ 116 (222)
|..++.|++..|+.+. +++||+||+|+.
T Consensus 182 ~~~r~~~~~~~y~~~~~p~~~ADivi~n~~ 211 (223)
T PRK06696 182 YLARYHPAQKLYIAEANPKERADVVIDNSD 211 (223)
T ss_pred HHHHHhHHHHHHHhhcChHhhCeEEEECCC
Confidence 8888999999998666 789999998764
No 27
>COG1072 CoaA Panthothenate kinase [Coenzyme metabolism]
Probab=99.43 E-value=1.1e-13 Score=119.09 Aligned_cols=113 Identities=19% Similarity=0.180 Sum_probs=91.0
Q ss_pred CccccCCCc-eeecccccccCccCCCCeeEeCCCcEEEEeccccCCCh----hhhccCCeEEEEECCHHHHHHHHHhhcc
Q 027528 1 MEKLRHGQA-VDIPNYDFKSYKNNVFPARRVNPSDVILLEGILVFHDS----RVRELMNMKIFVDTDADVRLARRIRRDT 75 (222)
Q Consensus 1 l~~Lk~g~~-v~~P~YD~~~~~r~~~~~~~v~~~~vvIvEGi~~l~~~----~l~~~~D~~Ifvd~d~d~rl~Rri~RD~ 75 (222)
|..+|+|++ |.+|+|||.++++..++...++..+|||+||+|+|+++ .+.++||++||||+|.+.-.+|.+.|..
T Consensus 154 l~~vK~~~~~v~aPvysh~~yD~vpd~~~v~~~pdIlI~EG~nvLq~~~p~~~~sdffDfSIyvDa~~~~le~wyi~Rfl 233 (283)
T COG1072 154 LSDVKAGKPDVFAPVYSHLIYDPVPDAFQVVPQPDILIVEGNNVLQDGEPWLFLSDFFDFSIYVDADEELLEERYIERFL 233 (283)
T ss_pred HHHHhcCCCccccccccccccccCCCceeecCCCCEEEEechhhhcCCCccccccccceEEEEecCCHHHHHHHHHHHHH
Confidence 356788876 99999999999997777888899999999999999986 6789999999999999999999999987
Q ss_pred cccCCCHHHHHHHHHhccccchhhhccccCCCccEEEcCC
Q 027528 76 VEKGRDIATVLDQYSKFVKPAFDDFILPTKKYADIIIPRG 115 (222)
Q Consensus 76 ~~rg~~~~~~~~~~~~~~~p~~~~~i~p~~~~ADlvi~~~ 115 (222)
. .|.+....-+.|..+..|+-+ -+.-....+++.+-+.
T Consensus 234 ~-~g~~a~~~~~~~~~~~~~~~~-~~a~~~a~~~w~~in~ 271 (283)
T COG1072 234 K-FGLTAFEDPASYFHNYAPLSE-REAIESARAIWDNINL 271 (283)
T ss_pred h-cccchhhChhhHhhccCcchH-HHHHHhhhhcceeehh
Confidence 5 477777777777777666643 2344455566555444
No 28
>PRK06547 hypothetical protein; Provisional
Probab=99.41 E-value=6.3e-13 Score=108.32 Aligned_cols=95 Identities=15% Similarity=0.215 Sum_probs=78.9
Q ss_pred CCCceeecccccccCccCCCCeeEeCCCcEEEEeccccCCChhhhccCC-----eEEEEECCHHHHHHHHHhhcccccCC
Q 027528 6 HGQAVDIPNYDFKSYKNNVFPARRVNPSDVILLEGILVFHDSRVRELMN-----MKIFVDTDADVRLARRIRRDTVEKGR 80 (222)
Q Consensus 6 ~g~~v~~P~YD~~~~~r~~~~~~~v~~~~vvIvEGi~~l~~~~l~~~~D-----~~Ifvd~d~d~rl~Rri~RD~~~rg~ 80 (222)
.|++..+| |||.++.+ .....+.+.++||+||+++++ +++++++| ++|||++|.++|+.|++.||. .
T Consensus 70 ~g~~~~~~-yd~~~~~~--~~~~~l~~~~vVIvEG~~al~-~~~r~~~d~~g~v~~I~ld~~~~vr~~R~~~Rd~----~ 141 (172)
T PRK06547 70 EGRPGRWR-WDWANNRP--GDWVSVEPGRRLIIEGVGSLT-AANVALASLLGEVLTVWLDGPEALRKERALARDP----D 141 (172)
T ss_pred CCCCceec-CCCCCCCC--CCcEEeCCCCeEEEEehhhcc-HHHHHHhccCCCEEEEEEECCHHHHHHHHHhcCc----h
Confidence 57888888 99998865 345677888999999999996 78999999 999999999999999999994 2
Q ss_pred CHHHHHHHHHhccccchhhhcccc--CCCccEEEc
Q 027528 81 DIATVLDQYSKFVKPAFDDFILPT--KKYADIIIP 113 (222)
Q Consensus 81 ~~~~~~~~~~~~~~p~~~~~i~p~--~~~ADlvi~ 113 (222)
. ..|...+.|+++.|.+.+ +..||+++.
T Consensus 142 ----~-~~~~~~w~~~e~~~~~~~~~~~~ad~~~~ 171 (172)
T PRK06547 142 ----Y-APHWEMWAAQEERHFARYDPRDVADWLGS 171 (172)
T ss_pred ----h-hHHHHHHHHHHHHHHhcCCChhccEEEec
Confidence 2 223345788899998875 788999985
No 29
>cd02024 NRK1 Nicotinamide riboside kinase (NRK) is an enzyme involved in the metabolism of nicotinamide adenine dinucleotide (NAD+). This enzyme catalyzes the phosphorylation of nicotinamide riboside (NR) to form nicotinamide mononucleotide (NMN). It defines the NR salvage pathway of NAD+ biosynthesis in addition to the pathways through nicotinic acid mononucleotide (NaMN). This enzyme can also phosphorylate the anticancer drug tiazofurin, which is an analog of nicotinamide riboside.
Probab=99.36 E-value=3.5e-13 Score=111.25 Aligned_cols=100 Identities=10% Similarity=0.115 Sum_probs=74.1
Q ss_pred CccccCCCceeecccccccCccCC-------------CCeeEeCCCcEEEEeccccCCChhhhccCCeEEEEECCHHHHH
Q 027528 1 MEKLRHGQAVDIPNYDFKSYKNNV-------------FPARRVNPSDVILLEGILVFHDSRVRELMNMKIFVDTDADVRL 67 (222)
Q Consensus 1 l~~Lk~g~~v~~P~YD~~~~~r~~-------------~~~~~v~~~~vvIvEGi~~l~~~~l~~~~D~~Ifvd~d~d~rl 67 (222)
|..|++|+.+..|.|++....... .....+.+.++|||||+|+++++++++++|++|||++|.++++
T Consensus 66 L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iViVEG~~l~~~~~l~~l~D~~Ifvd~~~d~~~ 145 (187)
T cd02024 66 LDYWRETGHFPKFLRSHGNENDPEKEFIEDAQIEETKADLLGAEDLHILIVDGFLLYNYKPLVDLFDIRYFLRVPYETCK 145 (187)
T ss_pred HHHHHcCCCccCcccCccccccccccccchhhhhhccccccccCCCcEEEEechHhcCCHHHHhhcCceeEecCCHHHHH
Confidence 356788887777777666544311 1223457889999999999998899999999999999999999
Q ss_pred HHHHhhcccc-cCCCHHHHHHHHHhccccchhhh
Q 027528 68 ARRIRRDTVE-KGRDIATVLDQYSKFVKPAFDDF 100 (222)
Q Consensus 68 ~Rri~RD~~~-rg~~~~~~~~~~~~~~~p~~~~~ 100 (222)
+||+.||... .|.--.+-...|...++|+|.++
T Consensus 146 ~Rr~~R~~~~~~~~~w~Dp~~yf~~~v~p~y~~~ 179 (187)
T cd02024 146 RRREARTGYVTLEGFWPDPPGYFDGHVWPMYLKH 179 (187)
T ss_pred HHHHHcCCccccCcccCCCCcccccccchhHHHH
Confidence 9999999543 22112333456888899998653
No 30
>KOG2702 consensus Predicted panthothenate kinase/uridine kinase-related protein [Nucleotide transport and metabolism; Coenzyme transport and metabolism]
Probab=99.04 E-value=1.6e-10 Score=97.52 Aligned_cols=104 Identities=17% Similarity=0.145 Sum_probs=89.9
Q ss_pred CCceeecccccccCccCCCCeeEe-CCCcEEEEeccccCCCh----hhhccCCeEEEEECCHHHHHHHHHhhcccccC--
Q 027528 7 GQAVDIPNYDFKSYKNNVFPARRV-NPSDVILLEGILVFHDS----RVRELMNMKIFVDTDADVRLARRIRRDTVEKG-- 79 (222)
Q Consensus 7 g~~v~~P~YD~~~~~r~~~~~~~v-~~~~vvIvEGi~~l~~~----~l~~~~D~~Ifvd~d~d~rl~Rri~RD~~~rg-- 79 (222)
-..+.+|.|||..+++..+ -+-+ ....|||+||+|+|+++ .+.+++|.|+|+|++-+..++|--.|+.. .|
T Consensus 209 ~~~iyvPsFdHa~gDPv~D-dicVs~~~rIvI~EGnYlLl~~~~Wkdi~k~~d~k~~idV~~~~a~~RVa~RHl~-sGl~ 286 (323)
T KOG2702|consen 209 IPDIYVPSFDHALGDPVPD-DICVSKFTRIVILEGNYLLLDQENWKDIYKTLDDKYKIDVDYEAAEERVAKRHLQ-SGLV 286 (323)
T ss_pred CCceeccccccccCCCCcc-ceeecccceEEEEeccEEEecCccHHHHHHHhhhheeccccHHHHHHHHHHHhhc-cccc
Confidence 3579999999999999644 4555 45899999999999874 56778999999999999999999999985 58
Q ss_pred CCHHHHHHHHHhccccchhhhccccCCCccEEEc
Q 027528 80 RDIATVLDQYSKFVKPAFDDFILPTKKYADIIIP 113 (222)
Q Consensus 80 ~~~~~~~~~~~~~~~p~~~~~i~p~~~~ADlvi~ 113 (222)
.+++++..++..+.+++- .+|.-++-.+|+++.
T Consensus 287 ~t~~ea~er~d~ND~~N~-~~I~k~~i~~D~iv~ 319 (323)
T KOG2702|consen 287 TTIAEARERFDSNDLLNG-RDIDKHLIKVDNIVH 319 (323)
T ss_pred CCHHHHHhhcccccccch-HHHHhcccchHHHHH
Confidence 899999999999999985 778888999998875
No 31
>PRK08233 hypothetical protein; Provisional
Probab=98.88 E-value=8.9e-09 Score=83.10 Aligned_cols=99 Identities=28% Similarity=0.555 Sum_probs=77.4
Q ss_pred CcEEEEeccccCCChhhhccCCeEEEEECCHHHHHHHHHhhccccc-CCCHHHHHHHHHhccccchhhhccccCCCccEE
Q 027528 33 SDVILLEGILVFHDSRVRELMNMKIFVDTDADVRLARRIRRDTVEK-GRDIATVLDQYSKFVKPAFDDFILPTKKYADII 111 (222)
Q Consensus 33 ~~vvIvEGi~~l~~~~l~~~~D~~Ifvd~d~d~rl~Rri~RD~~~r-g~~~~~~~~~~~~~~~p~~~~~i~p~~~~ADlv 111 (222)
.++||+||.+....+++++.+|+.||+++|.++++.|++.|+.... +.+....+..|...++|.|.+++++....||++
T Consensus 78 ~~~vivd~~~~~~~~~~~~~~d~~i~l~~~~~~~~~R~~~R~~~~~~~~~~~~~~~~~~~~~~~~y~~~~~~~~~~~~~v 157 (182)
T PRK08233 78 VDYIIVDYPFAYLNSEMRQFIDVTIFIDTPLDIAMARRILRDFKEDTGNEIHNDLKHYLNYARPLYLEALHTVKPNADIV 157 (182)
T ss_pred ceEEEEeeehhhccHHHHHHcCEEEEEcCCHHHHHHHHHHHHhhhccccchhhHHHHHHHHHHHHHHHHhhcCccCCeEE
Confidence 3889999998877788999999999999999999999999986432 223445566777778999999999888889999
Q ss_pred EcCCCCchhhHHHHHHHHHHHhcc
Q 027528 112 IPRGGDNHVAIDLIVQHIRTKLGQ 135 (222)
Q Consensus 112 i~~~~~~~~~~~~~~~~i~~~l~~ 135 (222)
|++. ..++.+.+.|...|..
T Consensus 158 Id~~----~~~e~i~~~i~~~l~~ 177 (182)
T PRK08233 158 LDGA----LSVEEIINQIEEELYR 177 (182)
T ss_pred EcCC----CCHHHHHHHHHHHHHh
Confidence 9744 3355666666666653
No 32
>PLN03046 D-glycerate 3-kinase; Provisional
Probab=98.51 E-value=1.9e-07 Score=85.49 Aligned_cols=100 Identities=17% Similarity=0.345 Sum_probs=72.6
Q ss_pred ccCCCceeecccccccCc----cCCC-C-eeEeCCCcEEEEeccccCCCh-------------------------hhhcc
Q 027528 4 LRHGQAVDIPNYDFKSYK----NNVF-P-ARRVNPSDVILLEGILVFHDS-------------------------RVREL 52 (222)
Q Consensus 4 Lk~g~~v~~P~YD~~~~~----r~~~-~-~~~v~~~~vvIvEGi~~l~~~-------------------------~l~~~ 52 (222)
+++|+++.+|.||+.++. |... . ...+.|.+|||+||.++.+.+ .+..+
T Consensus 296 lk~G~~V~iP~YDKs~h~GrgDR~~~~~W~~v~~P~DVIIfEGW~vG~~P~~~~~l~~~D~~l~~VN~~L~~Y~~~w~~~ 375 (460)
T PLN03046 296 TKEGIKMKVPRYDKSAYSGRGDRADPSTWPEVEGPLEVILFEGWMLGFKPLPNEVVKAVDPQLEVVNKNLEAYYDAWDKF 375 (460)
T ss_pred hhCCCeeecCCCCccccCCCCCCcCcccceeecCCCCEEEEcCHHhCCCCCChHHhhccChhHHHHHHHHHHHHHHHHHh
Confidence 468999999999999966 4211 2 234478999999999987743 11224
Q ss_pred CCeEEEEECCH-HHHHHHHHhhccccc-----CCCHHHHHHHHHhccccchhhhcccc
Q 027528 53 MNMKIFVDTDA-DVRLARRIRRDTVEK-----GRDIATVLDQYSKFVKPAFDDFILPT 104 (222)
Q Consensus 53 ~D~~Ifvd~d~-d~rl~Rri~RD~~~r-----g~~~~~~~~~~~~~~~p~~~~~i~p~ 104 (222)
+|..|++.++. +.-..||++...+.+ |.+.+++.+ |..+.+|+|+.|....
T Consensus 376 ~D~li~L~a~d~~~Vy~WRlqQE~kLr~~gg~GMsdeqV~~-FV~~YmPaY~~y~~~L 432 (460)
T PLN03046 376 IDAWVVIKIQDPSCVYQWRLQAEIAMRADGKPGMSDEEVMD-FVSRYLPAYKAYLPTL 432 (460)
T ss_pred hceeEEeeCCChhHHHHHHHHHHHHHHHcCCCCCCHHHHHH-HHHHhhhHHHHHHHHH
Confidence 77888888875 788888887766443 678788655 6667899998887653
No 33
>cd02022 DPCK Dephospho-coenzyme A kinase (DPCK, EC 2.7.1.24) catalyzes the phosphorylation of dephosphocoenzyme A (dCoA) to yield CoA, which is the final step in CoA biosynthesis.
Probab=98.26 E-value=2.5e-06 Score=69.50 Aligned_cols=74 Identities=23% Similarity=0.414 Sum_probs=61.6
Q ss_pred CcEEEEeccccCCChhhhccCCeEEEEECCHHHHHHHHHhhcccccCCCHHHHHHHHHhccccchhhhccccCCCccEEE
Q 027528 33 SDVILLEGILVFHDSRVRELMNMKIFVDTDADVRLARRIRRDTVEKGRDIATVLDQYSKFVKPAFDDFILPTKKYADIII 112 (222)
Q Consensus 33 ~~vvIvEGi~~l~~~~l~~~~D~~Ifvd~d~d~rl~Rri~RD~~~rg~~~~~~~~~~~~~~~p~~~~~i~p~~~~ADlvi 112 (222)
..++|+|+.+++. ..+.+++|..|||++|.++++.|.+.|| |.+.+++..++... .+.. +.+..||+||
T Consensus 103 ~~~vive~plL~e-~~~~~~~D~vv~V~a~~~~ri~Rl~~Rd----~~s~~~~~~r~~~Q-~~~~-----~~~~~aD~vI 171 (179)
T cd02022 103 EKVVVLDIPLLFE-TGLEKLVDRVIVVDAPPEIQIERLMKRD----GLSEEEAEARIASQ-MPLE-----EKRARADFVI 171 (179)
T ss_pred CCEEEEEehHhhc-CCcHHhCCeEEEEECCHHHHHHHHHHcC----CCCHHHHHHHHHhc-CCHH-----HHHHhCCEEE
Confidence 4799999999976 5677899999999999999999999998 67899999888763 4432 4578899999
Q ss_pred cCCCC
Q 027528 113 PRGGD 117 (222)
Q Consensus 113 ~~~~~ 117 (222)
.|+.+
T Consensus 172 ~N~~~ 176 (179)
T cd02022 172 DNSGS 176 (179)
T ss_pred ECcCC
Confidence 97643
No 34
>PRK14730 coaE dephospho-CoA kinase; Provisional
Probab=98.19 E-value=1.2e-05 Score=66.57 Aligned_cols=86 Identities=23% Similarity=0.392 Sum_probs=66.1
Q ss_pred CcEEEEeccccCCChhhhccCCeEEEEECCHHHHHHHHHhhcccccCCCHHHHHHHHHhccccchhhhccccCCCccEEE
Q 027528 33 SDVILLEGILVFHDSRVRELMNMKIFVDTDADVRLARRIRRDTVEKGRDIATVLDQYSKFVKPAFDDFILPTKKYADIII 112 (222)
Q Consensus 33 ~~vvIvEGi~~l~~~~l~~~~D~~Ifvd~d~d~rl~Rri~RD~~~rg~~~~~~~~~~~~~~~p~~~~~i~p~~~~ADlvi 112 (222)
.+++++|-.+++. ..+..++|..|||++|.++|+.|.+.|| |.+.+++..+... .+| +++.+..||+||
T Consensus 107 ~~~vv~e~pll~E-~~~~~~~D~ii~V~a~~e~r~~Rl~~R~----g~s~e~~~~ri~~-Q~~-----~~~k~~~aD~vI 175 (195)
T PRK14730 107 NPIVVLVIPLLFE-AKLTDLCSEIWVVDCSPEQQLQRLIKRD----GLTEEEAEARINA-QWP-----LEEKVKLADVVL 175 (195)
T ss_pred CCEEEEEeHHhcC-cchHhCCCEEEEEECCHHHHHHHHHHcC----CCCHHHHHHHHHh-CCC-----HHHHHhhCCEEE
Confidence 4799999998875 4778899999999999999999999997 7888888877765 334 234678999999
Q ss_pred cCCCCchhhHHHHHHHHHHHh
Q 027528 113 PRGGDNHVAIDLIVQHIRTKL 133 (222)
Q Consensus 113 ~~~~~~~~~~~~~~~~i~~~l 133 (222)
.|+++ ++.+.+.+.+.+
T Consensus 176 ~N~g~----~e~l~~qv~~~l 192 (195)
T PRK14730 176 DNSGD----LEKLYQQVDQLL 192 (195)
T ss_pred ECCCC----HHHHHHHHHHHH
Confidence 87643 444445554443
No 35
>PRK14732 coaE dephospho-CoA kinase; Provisional
Probab=98.18 E-value=7.6e-06 Score=67.98 Aligned_cols=74 Identities=28% Similarity=0.443 Sum_probs=60.5
Q ss_pred CcEEEEeccccCCChhhhccCCeEEEEECCHHHHHHHHHhhcccccCCCHHHHHHHHHhccccchhhhccccCCCccEEE
Q 027528 33 SDVILLEGILVFHDSRVRELMNMKIFVDTDADVRLARRIRRDTVEKGRDIATVLDQYSKFVKPAFDDFILPTKKYADIII 112 (222)
Q Consensus 33 ~~vvIvEGi~~l~~~~l~~~~D~~Ifvd~d~d~rl~Rri~RD~~~rg~~~~~~~~~~~~~~~p~~~~~i~p~~~~ADlvi 112 (222)
.+++|+|...++- .....++|..|||++|.++++.|.+.|| |.+.+++..++.. ..| +.+.+..||++|
T Consensus 103 ~~~vi~e~pLL~E-~~~~~~~D~vi~V~a~~e~r~~RL~~R~----g~s~e~a~~ri~~-Q~~-----~~~k~~~aD~vI 171 (196)
T PRK14732 103 GKLVIWEVPLLFE-TDAYTLCDATVTVDSDPEESILRTISRD----GMKKEDVLARIAS-QLP-----ITEKLKRADYIV 171 (196)
T ss_pred CCcEEEEeeeeeE-cCchhhCCEEEEEECCHHHHHHHHHHcC----CCCHHHHHHHHHH-cCC-----HHHHHHhCCEEE
Confidence 4688999988874 4566789999999999999999999996 7789999888776 343 445688999999
Q ss_pred cCCCC
Q 027528 113 PRGGD 117 (222)
Q Consensus 113 ~~~~~ 117 (222)
.|+++
T Consensus 172 ~N~~~ 176 (196)
T PRK14732 172 RNDGN 176 (196)
T ss_pred ECCCC
Confidence 97754
No 36
>cd02020 CMPK Cytidine monophosphate kinase (CMPK) catalyzes the reversible phosphorylation of cytidine monophosphate (CMP) to produce cytidine diphosphate (CDP), using ATP as the preferred phosphoryl donor.
Probab=98.17 E-value=5.3e-06 Score=64.30 Aligned_cols=80 Identities=24% Similarity=0.319 Sum_probs=65.6
Q ss_pred CcEEEEeccccCCChhhhccCCeEEEEECCHHHHHHHHHhhcccc-cCCCHHHHHHHHHhccccchhhhccccC-CCccE
Q 027528 33 SDVILLEGILVFHDSRVRELMNMKIFVDTDADVRLARRIRRDTVE-KGRDIATVLDQYSKFVKPAFDDFILPTK-KYADI 110 (222)
Q Consensus 33 ~~vvIvEGi~~l~~~~l~~~~D~~Ifvd~d~d~rl~Rri~RD~~~-rg~~~~~~~~~~~~~~~p~~~~~i~p~~-~~ADl 110 (222)
.+-+|+||.++-+ .+.+..|+.||+++|++++..|+..|+... +|.+++++.+++.....+.+..|..|+. ..-|+
T Consensus 65 ~~~~Vidg~~~~~--~~~~~~~~~i~l~~~~~~r~~R~~~r~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~dl 142 (147)
T cd02020 65 KPGIVLEGRDIGT--VVFPDADLKIFLTASPEVRAKRRAKQLQAKGEGVDLEEILAEIIERDERDSTRYVAPLKLAEDAI 142 (147)
T ss_pred CCCEEEEeeeeee--EEcCCCCEEEEEECCHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHHhhhcccccccCCCCcE
Confidence 4568889998743 234568999999999999999999998442 3679999999999999999899999986 55678
Q ss_pred EEcC
Q 027528 111 IIPR 114 (222)
Q Consensus 111 vi~~ 114 (222)
+|+.
T Consensus 143 ~i~~ 146 (147)
T cd02020 143 VIDT 146 (147)
T ss_pred EEeC
Confidence 8874
No 37
>PRK14734 coaE dephospho-CoA kinase; Provisional
Probab=98.01 E-value=4.8e-05 Score=63.31 Aligned_cols=75 Identities=21% Similarity=0.303 Sum_probs=59.9
Q ss_pred CCcEEEEeccccCCChhhhccCCeEEEEECCHHHHHHHHHhhcccccCCCHHHHHHHHHhccccchhhhccccCCCccEE
Q 027528 32 PSDVILLEGILVFHDSRVRELMNMKIFVDTDADVRLARRIRRDTVEKGRDIATVLDQYSKFVKPAFDDFILPTKKYADII 111 (222)
Q Consensus 32 ~~~vvIvEGi~~l~~~~l~~~~D~~Ifvd~d~d~rl~Rri~RD~~~rg~~~~~~~~~~~~~~~p~~~~~i~p~~~~ADlv 111 (222)
+..++++|...++. ..+.+++|..|||++|.++++.|...|+ |.+.+++..++... +|.+.. +..||++
T Consensus 106 ~~~~vv~e~plL~e-~g~~~~~D~vi~V~a~~e~ri~Rl~~R~----g~s~e~~~~ri~~Q-~~~~~k-----~~~ad~v 174 (200)
T PRK14734 106 GAKVAVYDMPLLVE-KGLDRKMDLVVVVDVDVEERVRRLVEKR----GLDEDDARRRIAAQ-IPDDVR-----LKAADIV 174 (200)
T ss_pred CCCEEEEEeeceeE-cCccccCCeEEEEECCHHHHHHHHHHcC----CCCHHHHHHHHHhc-CCHHHH-----HHhCCEE
Confidence 34788888888864 4667789999999999999999999995 78999999888764 444332 5789999
Q ss_pred EcCCCC
Q 027528 112 IPRGGD 117 (222)
Q Consensus 112 i~~~~~ 117 (222)
|+|+.+
T Consensus 175 I~N~g~ 180 (200)
T PRK14734 175 VDNNGT 180 (200)
T ss_pred EECcCC
Confidence 987654
No 38
>PRK00081 coaE dephospho-CoA kinase; Reviewed
Probab=97.90 E-value=6.2e-05 Score=62.20 Aligned_cols=85 Identities=21% Similarity=0.327 Sum_probs=64.1
Q ss_pred cEEEEeccccCCChhhhccCCeEEEEECCHHHHHHHHHhhcccccCCCHHHHHHHHHhccccchhhhccccCCCccEEEc
Q 027528 34 DVILLEGILVFHDSRVRELMNMKIFVDTDADVRLARRIRRDTVEKGRDIATVLDQYSKFVKPAFDDFILPTKKYADIIIP 113 (222)
Q Consensus 34 ~vvIvEGi~~l~~~~l~~~~D~~Ifvd~d~d~rl~Rri~RD~~~rg~~~~~~~~~~~~~~~p~~~~~i~p~~~~ADlvi~ 113 (222)
.++++|+..++- ..+...+|..|||++|.++++.|...|| |.+.+++..++.. ..|.. .....||++|+
T Consensus 107 ~~vv~e~pll~e-~~~~~~~D~vi~V~a~~e~~~~Rl~~R~----~~s~e~~~~ri~~-Q~~~~-----~~~~~ad~vI~ 175 (194)
T PRK00081 107 PYVVLDIPLLFE-NGLEKLVDRVLVVDAPPETQLERLMARD----GLSEEEAEAIIAS-QMPRE-----EKLARADDVID 175 (194)
T ss_pred CEEEEEehHhhc-CCchhhCCeEEEEECCHHHHHHHHHHcC----CCCHHHHHHHHHH-hCCHH-----HHHHhCCEEEE
Confidence 799999999985 5777889999999999999999999996 6788888777664 34432 24678999998
Q ss_pred CCCCchhhHHHHHHHHHHHh
Q 027528 114 RGGDNHVAIDLIVQHIRTKL 133 (222)
Q Consensus 114 ~~~~~~~~~~~~~~~i~~~l 133 (222)
|+.+ ++.+.+.+...+
T Consensus 176 N~g~----~e~l~~qv~~i~ 191 (194)
T PRK00081 176 NNGD----LEELRKQVERLL 191 (194)
T ss_pred CCCC----HHHHHHHHHHHH
Confidence 7643 344444444443
No 39
>PLN02422 dephospho-CoA kinase
Probab=97.84 E-value=0.00014 Score=62.13 Aligned_cols=74 Identities=24% Similarity=0.346 Sum_probs=59.8
Q ss_pred CcEEEEeccccCCChhhhccCCeEEEEECCHHHHHHHHHhhcccccCCCHHHHHHHHHhccccchhhhccccCCCccEEE
Q 027528 33 SDVILLEGILVFHDSRVRELMNMKIFVDTDADVRLARRIRRDTVEKGRDIATVLDQYSKFVKPAFDDFILPTKKYADIII 112 (222)
Q Consensus 33 ~~vvIvEGi~~l~~~~l~~~~D~~Ifvd~d~d~rl~Rri~RD~~~rg~~~~~~~~~~~~~~~p~~~~~i~p~~~~ADlvi 112 (222)
.+++++|-..++- ....+.+|..|||++|.+++++|.+.|| |.+.+++..+... ..|... .+..||++|
T Consensus 107 ~~~vv~eipLL~E-~~~~~~~D~vI~V~a~~e~ri~RL~~R~----g~s~eea~~Ri~~-Q~~~ee-----k~~~AD~VI 175 (232)
T PLN02422 107 CKVIVLDIPLLFE-TKMDKWTKPVVVVWVDPETQLERLMARD----GLSEEQARNRINA-QMPLDW-----KRSKADIVI 175 (232)
T ss_pred CCEEEEEehhhhh-cchhhhCCEEEEEECCHHHHHHHHHHcC----CCCHHHHHHHHHH-cCChhH-----HHhhCCEEE
Confidence 4799999999975 4667889999999999999999999997 7788888877643 455432 378899999
Q ss_pred cCCCC
Q 027528 113 PRGGD 117 (222)
Q Consensus 113 ~~~~~ 117 (222)
+|+++
T Consensus 176 ~N~gs 180 (232)
T PLN02422 176 DNSGS 180 (232)
T ss_pred ECCCC
Confidence 97754
No 40
>PRK03333 coaE dephospho-CoA kinase/protein folding accessory domain-containing protein; Provisional
Probab=97.81 E-value=9.5e-05 Score=67.76 Aligned_cols=77 Identities=22% Similarity=0.404 Sum_probs=59.0
Q ss_pred CCcEEEEeccccCCChhhhccCCeEEEEECCHHHHHHHHHhhcccccCCCHHHHHHHHHhccccchhhhccccCCCccEE
Q 027528 32 PSDVILLEGILVFHDSRVRELMNMKIFVDTDADVRLARRIRRDTVEKGRDIATVLDQYSKFVKPAFDDFILPTKKYADII 111 (222)
Q Consensus 32 ~~~vvIvEGi~~l~~~~l~~~~D~~Ifvd~d~d~rl~Rri~RD~~~rg~~~~~~~~~~~~~~~p~~~~~i~p~~~~ADlv 111 (222)
+.+.++++|+.+|+...+..++|..|||++|.++++.|...| ||.+.+++...+... .+. ++....||++
T Consensus 103 ~~~~vvv~eipLL~E~~~~~~~D~iI~V~ap~e~ri~Rl~~r----Rg~s~~~a~~ri~~Q-~~~-----e~k~~~AD~v 172 (395)
T PRK03333 103 PEDAVVVEDIPLLVESGMAPLFHLVVVVDADVEVRVRRLVEQ----RGMAEADARARIAAQ-ASD-----EQRRAVADVW 172 (395)
T ss_pred CCCCEEEEEeeeeecCCchhhCCEEEEEECCHHHHHHHHHhc----CCCCHHHHHHHHHhc-CCh-----HHHHHhCCEE
Confidence 345666778777776677889999999999999999998775 478988887777653 332 2347889999
Q ss_pred EcCCCCc
Q 027528 112 IPRGGDN 118 (222)
Q Consensus 112 i~~~~~~ 118 (222)
|+|+.+.
T Consensus 173 IdN~~s~ 179 (395)
T PRK03333 173 LDNSGTP 179 (395)
T ss_pred EECCCCH
Confidence 9977553
No 41
>PLN02796 D-glycerate 3-kinase
Probab=97.81 E-value=5.2e-05 Score=68.15 Aligned_cols=96 Identities=22% Similarity=0.366 Sum_probs=64.9
Q ss_pred CCCceeecccccccCc----cCC-CCeeEe-CCCcEEEEeccccCCCh-------------------------hhhccCC
Q 027528 6 HGQAVDIPNYDFKSYK----NNV-FPARRV-NPSDVILLEGILVFHDS-------------------------RVRELMN 54 (222)
Q Consensus 6 ~g~~v~~P~YD~~~~~----r~~-~~~~~v-~~~~vvIvEGi~~l~~~-------------------------~l~~~~D 54 (222)
+|+++.+|.||++.+. |.. +.+..+ .|.+|||+||.++-..+ .+..++|
T Consensus 186 ~g~~v~iP~yDks~~~g~gDR~~~~~w~~v~~p~dVII~EGw~vG~~p~~~~~l~~~~~~l~~vN~~L~~y~~~w~~~~d 265 (347)
T PLN02796 186 EGSKMKVPRYDKSAYGGRGDRADPSTWPEVEGPLDVVLFEGWMLGFKPLGPDAVKAVDPQLEVVNKNLEAYYDAWDKLVD 265 (347)
T ss_pred CCCceecCCCCccccCCCCCCcCcccceEecCCCCEEEEcCcccCCCCCChHHhhccChhHHHHHHHHHHHHHHHHHhhc
Confidence 6889999999999966 421 123344 78999999999985532 2223578
Q ss_pred eEEEEECCH-HHHHHHHHhhc--c---cccCCCHHHHHHHHHhccccchhhhcc
Q 027528 55 MKIFVDTDA-DVRLARRIRRD--T---VEKGRDIATVLDQYSKFVKPAFDDFIL 102 (222)
Q Consensus 55 ~~Ifvd~d~-d~rl~Rri~RD--~---~~rg~~~~~~~~~~~~~~~p~~~~~i~ 102 (222)
..|.+.++. +.-..||.+-- + ...|.+.+++.+ |..+.+|+|+.|..
T Consensus 266 ~~i~L~a~~~~~v~~WR~qQE~~l~~~~~~gMsde~v~~-FV~~~mP~y~~y~~ 318 (347)
T PLN02796 266 SWIVIKVDDPSWVYEWRLQAEIAMRAKGKPGMSDEEVAD-FVSRYMPAYKAYLP 318 (347)
T ss_pred eEEEEeCCCchHHHHHHHHHHHHHHHhCCCCCCHHHHHH-HHHHHHHHHHHHHH
Confidence 889999874 44455555321 1 123678888755 55667999988843
No 42
>PF01121 CoaE: Dephospho-CoA kinase; InterPro: IPR001977 This family contains dephospho-CoA kinases (2.7.1.24 from EC), which catalyzes the final step in CoA biosynthesis, the phosphorylation of the 3'-hydroxyl group of ribose using ATP as a phosphate donor. The crystal structures of a number of the proteins in this entry have been determined, including the structure of the protein from Haemophilus influenzae to 2.0-A resolution in a comlex with ATP. The protein consists of three domains: the nucleotide-binding domain with a five-stranded parallel beta-sheet, the substrate-binding alpha-helical domain, and the lid domain formed by a pair of alpha-helices; the overall topology of the protein resembles the structures of other nucleotide kinases [].; GO: 0004140 dephospho-CoA kinase activity, 0005524 ATP binding, 0015937 coenzyme A biosynthetic process; PDB: 1VHL_A 1N3B_A 1VIY_A 1VHT_B 1T3H_B 1UF9_C 2F6R_A 2GRJ_D 2IF2_C 1JJV_A.
Probab=97.80 E-value=5.8e-05 Score=61.94 Aligned_cols=73 Identities=26% Similarity=0.412 Sum_probs=55.2
Q ss_pred cEEEEeccccCCChhhhccCCeEEEEECCHHHHHHHHHhhcccccCCCHHHHHHHHHhccccchhhhccccCCCccEEEc
Q 027528 34 DVILLEGILVFHDSRVRELMNMKIFVDTDADVRLARRIRRDTVEKGRDIATVLDQYSKFVKPAFDDFILPTKKYADIIIP 113 (222)
Q Consensus 34 ~vvIvEGi~~l~~~~l~~~~D~~Ifvd~d~d~rl~Rri~RD~~~rg~~~~~~~~~~~~~~~p~~~~~i~p~~~~ADlvi~ 113 (222)
+++++|...++- ..+..++|..|+|++|.++++.|.+.|| |.+.+++...... ..|..++ ++.||+||.
T Consensus 105 ~~~v~e~pLL~E-~~~~~~~D~vi~V~a~~e~ri~Rl~~R~----~~~~~~~~~ri~~-Q~~~~~k-----~~~ad~vI~ 173 (180)
T PF01121_consen 105 KVVVVEIPLLFE-SGLEKLCDEVIVVYAPEEIRIKRLMERD----GLSEEEAEARIAS-QMPDEEK-----RKRADFVID 173 (180)
T ss_dssp SEEEEE-TTTTT-TTGGGGSSEEEEEE--HHHHHHHHHHHH----TSTHHHHHHHHHT-S--HHHH-----HHH-SEEEE
T ss_pred CEEEEEcchhhh-hhHhhhhceEEEEECCHHHHHHHHHhhC----CCcHHHHHHHHHh-CCCHHHH-----HHhCCEEEE
Confidence 899999999875 4778899999999999999999999997 8899999887664 4665543 578999998
Q ss_pred CCCC
Q 027528 114 RGGD 117 (222)
Q Consensus 114 ~~~~ 117 (222)
|+++
T Consensus 174 N~g~ 177 (180)
T PF01121_consen 174 NNGS 177 (180)
T ss_dssp -SSH
T ss_pred CCCC
Confidence 7643
No 43
>PRK14731 coaE dephospho-CoA kinase; Provisional
Probab=97.75 E-value=0.00027 Score=59.00 Aligned_cols=75 Identities=20% Similarity=0.328 Sum_probs=57.1
Q ss_pred CCcEEEEeccccCCChhhhccCCeEEEEECCHHHHHHHHHhhcccccCCCHHHHHHHHHhccccchhhhccccCCCccEE
Q 027528 32 PSDVILLEGILVFHDSRVRELMNMKIFVDTDADVRLARRIRRDTVEKGRDIATVLDQYSKFVKPAFDDFILPTKKYADII 111 (222)
Q Consensus 32 ~~~vvIvEGi~~l~~~~l~~~~D~~Ifvd~d~d~rl~Rri~RD~~~rg~~~~~~~~~~~~~~~p~~~~~i~p~~~~ADlv 111 (222)
+.+++++|+..++. ......+|..|||++|.++++.|.+.|+ +.+.+++.++... ..+.. .++ ..||++
T Consensus 114 ~~~vvv~e~pLL~e-~~~~~~~d~ii~V~a~~e~~~~Rl~~R~----~~s~e~~~~Ri~~-q~~~~-~~~----~~ad~v 182 (208)
T PRK14731 114 GKRILVKEAAILFE-SGGDAGLDFIVVVAADTELRLERAVQRG----MGSREEIRRRIAA-QWPQE-KLI----ERADYV 182 (208)
T ss_pred CCCEEEEEeeeeee-cCchhcCCeEEEEECCHHHHHHHHHHcC----CCCHHHHHHHHHH-cCChH-HHH----HhCCEE
Confidence 34799999996654 4566789999999999999999999996 4578888877654 34443 333 469999
Q ss_pred EcCCCC
Q 027528 112 IPRGGD 117 (222)
Q Consensus 112 i~~~~~ 117 (222)
|.|+.+
T Consensus 183 I~N~g~ 188 (208)
T PRK14731 183 IYNNGT 188 (208)
T ss_pred EECCCC
Confidence 987643
No 44
>PRK14733 coaE dephospho-CoA kinase; Provisional
Probab=97.72 E-value=0.00031 Score=58.80 Aligned_cols=75 Identities=17% Similarity=0.247 Sum_probs=58.4
Q ss_pred CCcEEEEeccccCCCh-hhhccCCeEEEEECCHHHHHHHHHhhcccccCCCHHHHHHHHHhccccchhhhccccCCCccE
Q 027528 32 PSDVILLEGILVFHDS-RVRELMNMKIFVDTDADVRLARRIRRDTVEKGRDIATVLDQYSKFVKPAFDDFILPTKKYADI 110 (222)
Q Consensus 32 ~~~vvIvEGi~~l~~~-~l~~~~D~~Ifvd~d~d~rl~Rri~RD~~~rg~~~~~~~~~~~~~~~p~~~~~i~p~~~~ADl 110 (222)
+..++++|...++-.. ...+++|..|+|++|.++++.|.+.|| |.+.+++..+... ..|..+ -++.||+
T Consensus 107 ~~~~vv~eipLL~E~~~~~~~~~D~vi~V~a~~e~ri~Rl~~Rd----~~s~~~a~~ri~~-Q~~~ee-----k~~~aD~ 176 (204)
T PRK14733 107 DTVMTIVDIPLLGPYNFRHYDYLKKVIVIKADLETRIRRLMERD----GKNRQQAVAFINL-QISDKE-----REKIADF 176 (204)
T ss_pred CCCeEEEEechhhhccCchhhhCCEEEEEECCHHHHHHHHHHcC----CCCHHHHHHHHHh-CCCHHH-----HHHhCCE
Confidence 3468999998886421 124679999999999999999999997 6788888887665 455432 4788999
Q ss_pred EEcCCC
Q 027528 111 IIPRGG 116 (222)
Q Consensus 111 vi~~~~ 116 (222)
||+|++
T Consensus 177 VI~N~g 182 (204)
T PRK14733 177 VIDNTE 182 (204)
T ss_pred EEECcC
Confidence 999876
No 45
>PTZ00451 dephospho-CoA kinase; Provisional
Probab=97.70 E-value=0.00028 Score=60.67 Aligned_cols=73 Identities=16% Similarity=0.306 Sum_probs=58.3
Q ss_pred CcEEEEeccccCCChhhhccCCeEEEEECCHHHHHHHHHhhcccccCCCHHHHHHHHHhccccchhhhccccCCCccEEE
Q 027528 33 SDVILLEGILVFHDSRVRELMNMKIFVDTDADVRLARRIRRDTVEKGRDIATVLDQYSKFVKPAFDDFILPTKKYADIII 112 (222)
Q Consensus 33 ~~vvIvEGi~~l~~~~l~~~~D~~Ifvd~d~d~rl~Rri~RD~~~rg~~~~~~~~~~~~~~~p~~~~~i~p~~~~ADlvi 112 (222)
..++++|...++-......++|..|||++|.++++.|.+.|+ |.+.+++.++... ..|.. ..+..||+||
T Consensus 117 ~~~vv~evPLL~E~~~~~~~~D~iv~V~a~~e~ri~RL~~R~----g~s~eea~~Ri~~-Q~~~~-----ek~~~aD~VI 186 (244)
T PTZ00451 117 PLIVVLDAPTLFETKTFTYFVSASVVVSCSEERQIERLRKRN----GFSKEEALQRIGS-QMPLE-----EKRRLADYII 186 (244)
T ss_pred CCEEEEEechhhccCchhhcCCeEEEEECCHHHHHHHHHHcC----CCCHHHHHHHHHh-CCCHH-----HHHHhCCEEE
Confidence 359999999998532234578999999999999999999985 7899999888866 44432 2578899999
Q ss_pred cCC
Q 027528 113 PRG 115 (222)
Q Consensus 113 ~~~ 115 (222)
.|+
T Consensus 187 ~N~ 189 (244)
T PTZ00451 187 END 189 (244)
T ss_pred ECC
Confidence 876
No 46
>TIGR00152 dephospho-CoA kinase. This model produces scores in the range of 0-25 bits against adenylate, guanylate, uridine, and thymidylate kinases.
Probab=97.66 E-value=0.0002 Score=58.59 Aligned_cols=73 Identities=23% Similarity=0.307 Sum_probs=58.7
Q ss_pred cEEEEeccccCCChhhhccCCeEEEEECCHHHHHHHHHhhcccccCCCHHHHHHHHHhccccchhhhccccCCCccEEEc
Q 027528 34 DVILLEGILVFHDSRVRELMNMKIFVDTDADVRLARRIRRDTVEKGRDIATVLDQYSKFVKPAFDDFILPTKKYADIIIP 113 (222)
Q Consensus 34 ~vvIvEGi~~l~~~~l~~~~D~~Ifvd~d~d~rl~Rri~RD~~~rg~~~~~~~~~~~~~~~p~~~~~i~p~~~~ADlvi~ 113 (222)
.+|++|....+. ..+..++|..|||++|.++++.|.+.|| |.+.+++..++... .+. ...+..||++|.
T Consensus 106 ~~vvi~~pll~e-~~~~~~~D~vv~V~~~~~~~~~Rl~~R~----~~s~~~~~~r~~~q-~~~-----~~~~~~ad~vI~ 174 (188)
T TIGR00152 106 AYVLLDVPLLFE-NKLRSLCDRVIVVDVSPQLQLERLMQRD----NLTEEEVQKRLASQ-MDI-----EERLARADDVID 174 (188)
T ss_pred CEEEEEchHhhh-CCcHHhCCEEEEEECCHHHHHHHHHHcC----CCCHHHHHHHHHhc-CCH-----HHHHHhCCEEEE
Confidence 488888877754 4678899999999999999999999998 78889988887763 333 245788999998
Q ss_pred CCCC
Q 027528 114 RGGD 117 (222)
Q Consensus 114 ~~~~ 117 (222)
|++.
T Consensus 175 N~~~ 178 (188)
T TIGR00152 175 NSAT 178 (188)
T ss_pred CCCC
Confidence 7643
No 47
>PRK01184 hypothetical protein; Provisional
Probab=97.59 E-value=0.00038 Score=56.49 Aligned_cols=82 Identities=15% Similarity=0.216 Sum_probs=54.5
Q ss_pred CCcEEEEeccccCCC-hhhhccCC---eEEEEECCHHHHHHHHHhhcccccCCCHHHHHHHHHhccccchhhhccccCCC
Q 027528 32 PSDVILLEGILVFHD-SRVRELMN---MKIFVDTDADVRLARRIRRDTVEKGRDIATVLDQYSKFVKPAFDDFILPTKKY 107 (222)
Q Consensus 32 ~~~vvIvEGi~~l~~-~~l~~~~D---~~Ifvd~d~d~rl~Rri~RD~~~rg~~~~~~~~~~~~~~~p~~~~~i~p~~~~ 107 (222)
+..++|++|...+.. ..++..++ ..|||++|.+++..|...|+....+.+.+++.++......++ +.+....
T Consensus 79 ~~~~vvidg~r~~~e~~~~~~~~~~~~~~i~v~~~~~~~~~Rl~~R~~~~d~~~~~~~~~r~~~q~~~~----~~~~~~~ 154 (184)
T PRK01184 79 GDEVVVIDGVRGDAEVEYFRKEFPEDFILIAIHAPPEVRFERLKKRGRSDDPKSWEELEERDERELSWG----IGEVIAL 154 (184)
T ss_pred CCCcEEEeCCCCHHHHHHHHHhCCcccEEEEEECCHHHHHHHHHHcCCCCChhhHHHHHHHHHHHhccC----HHHHHHh
Confidence 468899999854321 24455566 899999999999999999874332445666666554322111 2234478
Q ss_pred ccEEEcCCCC
Q 027528 108 ADIIIPRGGD 117 (222)
Q Consensus 108 ADlvi~~~~~ 117 (222)
||++|+|+.+
T Consensus 155 ad~vI~N~~~ 164 (184)
T PRK01184 155 ADYMIVNDST 164 (184)
T ss_pred cCEEEeCCCC
Confidence 9999987644
No 48
>TIGR02173 cyt_kin_arch cytidylate kinase, putative. Proteins in this family are believed to be cytidylate kinase. Members of this family are found in the archaea and in spirochaetes, and differ considerably from the common bacterial form of cytidylate kinase described by TIGR00017.
Probab=97.50 E-value=0.00058 Score=54.24 Aligned_cols=90 Identities=20% Similarity=0.278 Sum_probs=57.5
Q ss_pred CcEEEEeccccCCChhhhccCCeEEEEECCHHHHHHHHHhhcccccCCCHHHHHHHHHhccccchh---hhccc---cCC
Q 027528 33 SDVILLEGILVFHDSRVRELMNMKIFVDTDADVRLARRIRRDTVEKGRDIATVLDQYSKFVKPAFD---DFILP---TKK 106 (222)
Q Consensus 33 ~~vvIvEGi~~l~~~~l~~~~D~~Ifvd~d~d~rl~Rri~RD~~~rg~~~~~~~~~~~~~~~p~~~---~~i~p---~~~ 106 (222)
.+.+|+||.++.+ .+.+..|++|||++|.++|..|...|+ |.+.+++..++......... .|..+ ...
T Consensus 74 ~~~~Vi~g~~~~~--~~~~~~d~~v~v~a~~~~r~~R~~~R~----~~s~~~a~~~~~~~d~~~~~~~~~~~~~~~~~~~ 147 (171)
T TIGR02173 74 EKNVVLESRLAGW--IVREYADVKIWLKAPLEVRARRIAKRE----GKSLTVARSETIEREESEKRRYLKFYGIDIDDLS 147 (171)
T ss_pred CCCEEEEecccce--eecCCcCEEEEEECCHHHHHHHHHHcc----CCCHHHHHHHHHHHHHHHHHHHHHHhCCCccccc
Confidence 3567789987643 235678899999999999999999986 56777777665543332222 22222 245
Q ss_pred CccEEEcCCCCchhhHHHHHHH
Q 027528 107 YADIIIPRGGDNHVAIDLIVQH 128 (222)
Q Consensus 107 ~ADlvi~~~~~~~~~~~~~~~~ 128 (222)
+-|++|+.+.-+.-.++.|.++
T Consensus 148 ~ydl~i~t~~~~~~~~~~i~~~ 169 (171)
T TIGR02173 148 IYDLVINTSNWDPNNVDIILDA 169 (171)
T ss_pred cccEEEECCCCCHHHHHHHHHH
Confidence 6699998664432114444443
No 49
>PRK04182 cytidylate kinase; Provisional
Probab=97.40 E-value=0.0016 Score=52.08 Aligned_cols=94 Identities=19% Similarity=0.357 Sum_probs=54.5
Q ss_pred CCcEEEEeccccCCChhhhccCCeEEEEECCHHHHHHHHHhhcccccCCCHHHHHHHHHhccccc---hhhhc---cccC
Q 027528 32 PSDVILLEGILVFHDSRVRELMNMKIFVDTDADVRLARRIRRDTVEKGRDIATVLDQYSKFVKPA---FDDFI---LPTK 105 (222)
Q Consensus 32 ~~~vvIvEGi~~l~~~~l~~~~D~~Ifvd~d~d~rl~Rri~RD~~~rg~~~~~~~~~~~~~~~p~---~~~~i---~p~~ 105 (222)
..+.+|++|.++-+ .+++..++.||+++|.+++..|...|+ +++..++.........+. |..+. .+..
T Consensus 73 ~~~~~Vi~g~~~~~--~~~~~~~~~V~l~a~~e~~~~Rl~~r~----~~~~~~a~~~~~~~d~~~~~~~~~~~~~~~~~~ 146 (180)
T PRK04182 73 KEDNVVLEGRLAGW--MAKDYADLKIWLKAPLEVRAERIAERE----GISVEEALEETIEREESEAKRYKEYYGIDIDDL 146 (180)
T ss_pred cCCCEEEEEeecce--EecCCCCEEEEEECCHHHHHHHHHhcc----CCCHHHHHHHHHHHHHHHHHHHHHHhCCCcccc
Confidence 33456778876532 122447899999999999999998885 456655544333222221 11111 1234
Q ss_pred CCccEEEcCCCCc-hhhHHHHHHHHHH
Q 027528 106 KYADIIIPRGGDN-HVAIDLIVQHIRT 131 (222)
Q Consensus 106 ~~ADlvi~~~~~~-~~~~~~~~~~i~~ 131 (222)
..||++|+++..+ +-.++.+.+.+..
T Consensus 147 ~~~d~~idt~~~~~~~~~~~I~~~~~~ 173 (180)
T PRK04182 147 SIYDLVINTSRWDPEGVFDIILTAIDK 173 (180)
T ss_pred ccccEEEECCCCCHHHHHHHHHHHHHH
Confidence 6899999966433 2233444444443
No 50
>PRK00023 cmk cytidylate kinase; Provisional
Probab=97.25 E-value=0.0023 Score=54.16 Aligned_cols=97 Identities=18% Similarity=0.247 Sum_probs=63.1
Q ss_pred cEEEEeccccCCChhhhccCCeEEEEECCHHHHHHHHHhhcccc-cCCCHHHHHHHHHhccccchhhhccccCCCcc-EE
Q 027528 34 DVILLEGILVFHDSRVRELMNMKIFVDTDADVRLARRIRRDTVE-KGRDIATVLDQYSKFVKPAFDDFILPTKKYAD-II 111 (222)
Q Consensus 34 ~vvIvEGi~~l~~~~l~~~~D~~Ifvd~d~d~rl~Rri~RD~~~-rg~~~~~~~~~~~~~~~p~~~~~i~p~~~~AD-lv 111 (222)
+-+|+||-..-. .+.+-.+++||+++|.+.|..||..+.... .+.+.+++.+....+..-....++.|.+..+| ++
T Consensus 123 ~~~Vi~GR~~~~--~vl~~a~~~ifl~a~~e~R~~Rr~~~~~~~g~~~~~~~~~~~i~~rD~~~~~r~~~~l~~~~d~l~ 200 (225)
T PRK00023 123 PGLVMDGRDIGT--VVFPDAELKIFLTASAEERAERRYKELQAKGISVDFEDLLAEIKERDERDSNRAVAPLKPAEDALL 200 (225)
T ss_pred CCEEEEecChhe--EEeCCCCEEEEEECCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHhhhhcccccccccCCEEE
Confidence 458999986221 222337999999999999988887774321 24577777777666555444566788777776 88
Q ss_pred EcCCCCc-hhhHHHHHHHHHHH
Q 027528 112 IPRGGDN-HVAIDLIVQHIRTK 132 (222)
Q Consensus 112 i~~~~~~-~~~~~~~~~~i~~~ 132 (222)
|+++.-+ +-.++.+.+.+...
T Consensus 201 IDTs~l~~ee~v~~I~~~i~~~ 222 (225)
T PRK00023 201 LDTSGLSIEEVVEKILALVEEK 222 (225)
T ss_pred EECCCCCHHHHHHHHHHHHHHH
Confidence 8866433 33445555555443
No 51
>COG1102 Cmk Cytidylate kinase [Nucleotide transport and metabolism]
Probab=97.02 E-value=0.003 Score=51.11 Aligned_cols=81 Identities=22% Similarity=0.284 Sum_probs=58.4
Q ss_pred CcEEEEeccccCCChhhhccCCeEEEEECCHHHHHHHHHhhcccccCCCHHHHHHHHHhccccchhhhc-----cc-cCC
Q 027528 33 SDVILLEGILVFHDSRVRELMNMKIFVDTDADVRLARRIRRDTVEKGRDIATVLDQYSKFVKPAFDDFI-----LP-TKK 106 (222)
Q Consensus 33 ~~vvIvEGi~~l~~~~l~~~~D~~Ifvd~d~d~rl~Rri~RD~~~rg~~~~~~~~~~~~~~~p~~~~~i-----~p-~~~ 106 (222)
.+=+|+||-.|-+ -+++..|+|||+.+|..+|..|-..|+ |.+.+++...-..+-+-....|- .. -..
T Consensus 73 ~~nvVlegrLA~W--i~k~~adlkI~L~Apl~vRa~Ria~RE----gi~~~~a~~~~~~RE~se~kRY~~~YgIDidDlS 146 (179)
T COG1102 73 EGNVVLEGRLAGW--IVREYADLKIWLKAPLEVRAERIAKRE----GIDVDEALAETVEREESEKKRYKKIYGIDIDDLS 146 (179)
T ss_pred cCCeEEhhhhHHH--HhccccceEEEEeCcHHHHHHHHHHhc----CCCHHHHHHHHHHHHHHHHHHHHHHhCCCCccce
Confidence 5668899999865 344789999999999999999999997 78888888664443333333332 22 257
Q ss_pred CccEEEcCCCCch
Q 027528 107 YADIIIPRGGDNH 119 (222)
Q Consensus 107 ~ADlvi~~~~~~~ 119 (222)
-.|+||+.+.-+.
T Consensus 147 iyDLVinTs~~~~ 159 (179)
T COG1102 147 IYDLVINTSKWDP 159 (179)
T ss_pred eeEEEEecccCCH
Confidence 7899998664443
No 52
>PRK13477 bifunctional pantoate ligase/cytidylate kinase; Provisional
Probab=96.80 E-value=0.0077 Score=57.04 Aligned_cols=122 Identities=20% Similarity=0.155 Sum_probs=80.1
Q ss_pred CCceeecccccccCccCCCCee--------------------EeCCCcEEEEeccccCCChhhhccCCeEEEEECCHHHH
Q 027528 7 GQAVDIPNYDFKSYKNNVFPAR--------------------RVNPSDVILLEGILVFHDSRVRELMNMKIFVDTDADVR 66 (222)
Q Consensus 7 g~~v~~P~YD~~~~~r~~~~~~--------------------~v~~~~vvIvEGi~~l~~~~l~~~~D~~Ifvd~d~d~r 66 (222)
|..+.+|.||+..+-|..+-.. .+...+=+|+||--.-. -+-+-.|+|||++++.++|
T Consensus 357 ~~~i~~~~~dv~~~iRs~eV~~~vS~ia~~p~VR~~l~~~qr~~~~~~~iV~eGRDigt--vV~P~AdlKIfL~As~evR 434 (512)
T PRK13477 357 PQRVWINGEDVTEAIRSPEVTSSVSAIAAQPAVRQALVKQQQRIGEKGGLVAEGRDIGT--HVFPDAELKIFLTASVEER 434 (512)
T ss_pred CceEEeCCcchHhhhcchhHHHHHHHHhCCHHHHHHHHHHHHHHhhcCCEEEEccccee--EEcCCCCEEEEEECCHHHH
Confidence 4569999999988877321000 11122338999975422 2234479999999999999
Q ss_pred HHHHHhhcccccCC---CHHHHHHHHHhccccchhhhccccCCC-ccEEEcCCCCchhhHHHHHHHHHHHhc
Q 027528 67 LARRIRRDTVEKGR---DIATVLDQYSKFVKPAFDDFILPTKKY-ADIIIPRGGDNHVAIDLIVQHIRTKLG 134 (222)
Q Consensus 67 l~Rri~RD~~~rg~---~~~~~~~~~~~~~~p~~~~~i~p~~~~-ADlvi~~~~~~~~~~~~~~~~i~~~l~ 134 (222)
..||..+.. .||. +.+++.+.+..+..-....++.|.... ++++|+.+..+ ++.+++.|.+.+.
T Consensus 435 a~RR~~~l~-~Rpll~~~~e~i~~~i~eRd~~D~~R~i~PLy~a~dai~IDTs~ls---ieeVv~~Il~~i~ 502 (512)
T PRK13477 435 ARRRALDLQ-AQGFPVIDLEQLEAQIAERDRLDSTREIAPLRKADDAIELITDGLS---IEEVVDKIIDLYR 502 (512)
T ss_pred HHHHHhhhh-hCCCccCCHHHHHHHHHHHHhhhcccccccccccCCeEEEECCCCC---HHHHHHHHHHHHH
Confidence 999987643 4554 478888888877666666778887655 67989865433 4444555555443
No 53
>PRK08118 topology modulation protein; Reviewed
Probab=96.67 E-value=0.0023 Score=51.65 Aligned_cols=49 Identities=18% Similarity=0.203 Sum_probs=38.0
Q ss_pred cEEEEeccccCCChhhhccCCeEEEEECCHHHHHHHHHhhcccccCCCH
Q 027528 34 DVILLEGILVFHDSRVRELMNMKIFVDTDADVRLARRIRRDTVEKGRDI 82 (222)
Q Consensus 34 ~vvIvEGi~~l~~~~l~~~~D~~Ifvd~d~d~rl~Rri~RD~~~rg~~~ 82 (222)
+-.|+||.|+-..+..-+..|..||+|+|.++++.|.+.|....+|.+.
T Consensus 60 ~~wVidG~~~~~~~~~l~~~d~vi~Ld~p~~~~~~R~~~R~~~~~g~~~ 108 (167)
T PRK08118 60 DEWIIDGNYGGTMDIRLNAADTIIFLDIPRTICLYRAFKRRVQYRGKTR 108 (167)
T ss_pred CCEEEeCCcchHHHHHHHhCCEEEEEeCCHHHHHHHHHHHHHHHcCCCC
Confidence 4589999998333334457999999999999999999999876555433
No 54
>TIGR00017 cmk cytidylate kinase. This family consists of cytidylate kinase, which catalyzes the phosphorylation of cytidine 5-monophosphate (dCMP) to cytidine 5 -diphosphate (dCDP) in the presence of ATP or GTP. UMP and dCMP can also act as acceptors.
Probab=96.67 E-value=0.011 Score=49.72 Aligned_cols=93 Identities=22% Similarity=0.296 Sum_probs=62.8
Q ss_pred cEEEEeccccCCChhhhccCCeEEEEECCHHHHHHHHHhhcccc-cCCCHHHHHHHHHhccccchhhhccccCCCcc-EE
Q 027528 34 DVILLEGILVFHDSRVRELMNMKIFVDTDADVRLARRIRRDTVE-KGRDIATVLDQYSKFVKPAFDDFILPTKKYAD-II 111 (222)
Q Consensus 34 ~vvIvEGi~~l~~~~l~~~~D~~Ifvd~d~d~rl~Rri~RD~~~-rg~~~~~~~~~~~~~~~p~~~~~i~p~~~~AD-lv 111 (222)
+=+|+||-..-. . +-+-.+++||+++|.+.|..|+..|.... .+-+.+++.++|..+..-....+..|.....| ++
T Consensus 121 ~~~Vi~Gr~~~~-~-v~~~a~~~ifl~a~~~~Ra~Rr~~~~~~~g~~~~~e~~~~~i~~RD~~D~~R~~~~~~~a~~~i~ 198 (217)
T TIGR00017 121 DGIIADGRDIGT-V-VFPNAEVKIFLDASVEERAKRRYKQLQIKGNEVNFEELLAEIKERDDRDSNREVAPLKKADDALY 198 (217)
T ss_pred CCEEEEEcCcce-E-EeCCCCEEEEEECCHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHHhcccccccCcccCCCCeEE
Confidence 348999997322 1 23338899999999999999999997532 13567999999988755555566677643333 66
Q ss_pred EcCCCCchhhHHHHHHHHHH
Q 027528 112 IPRGGDNHVAIDLIVQHIRT 131 (222)
Q Consensus 112 i~~~~~~~~~~~~~~~~i~~ 131 (222)
|+++. ..++.+++.|.+
T Consensus 199 Idts~---l~ieevv~~I~~ 215 (217)
T TIGR00017 199 LDTSN---LSIDEVVEKILE 215 (217)
T ss_pred EECCC---CCHHHHHHHHHH
Confidence 76542 345556665543
No 55
>PRK06217 hypothetical protein; Validated
Probab=96.64 E-value=0.0078 Score=48.92 Aligned_cols=45 Identities=18% Similarity=0.292 Sum_probs=38.1
Q ss_pred CcEEEEeccccCCChhhhccCCeEEEEECCHHHHHHHHHhhcccc
Q 027528 33 SDVILLEGILVFHDSRVRELMNMKIFVDTDADVRLARRIRRDTVE 77 (222)
Q Consensus 33 ~~vvIvEGi~~l~~~~l~~~~D~~Ifvd~d~d~rl~Rri~RD~~~ 77 (222)
.+-.|+||.|..+.+.+...+|..||+++|.++++.|...|+...
T Consensus 64 ~~~~vi~G~~~~~~~~~~~~~d~~i~Ld~~~~~~~~Rl~~R~~~~ 108 (183)
T PRK06217 64 REGWVLSGSALGWGDPLEPLFDLVVFLTIPPELRLERLRLREFQR 108 (183)
T ss_pred CCCEEEEccHHHHHHHHHhhCCEEEEEECCHHHHHHHHHcCcccc
Confidence 345799999986545677889999999999999999999998653
No 56
>KOG3308 consensus Uncharacterized protein of the uridine kinase family [Nucleotide transport and metabolism]
Probab=96.43 E-value=0.0018 Score=54.11 Aligned_cols=84 Identities=13% Similarity=0.274 Sum_probs=66.0
Q ss_pred eeEeCCCcEEEEeccccCCChhhhccCCeEEEEECCHHHHHHHHHhhcccccCCCHHHHHHHHHhccccchhhhccccCC
Q 027528 27 ARRVNPSDVILLEGILVFHDSRVRELMNMKIFVDTDADVRLARRIRRDTVEKGRDIATVLDQYSKFVKPAFDDFILPTKK 106 (222)
Q Consensus 27 ~~~v~~~~vvIvEGi~~l~~~~l~~~~D~~Ifvd~d~d~rl~Rri~RD~~~rg~~~~~~~~~~~~~~~p~~~~~i~p~~~ 106 (222)
.+.....++||+||.+.+..+.+.+.+|.+|++..|-+++..||-.|- |+-+.+. -++...++|.|.++..-.+.
T Consensus 102 q~~~~~~~iviidGfmiy~y~p~~~~~d~~im~~~~y~~~krRr~~Rt----~y~p~~t-gyfd~~~~P~Y~~~~~~~~d 176 (225)
T KOG3308|consen 102 QIKAYKNHIVIIDGFMIYNYKPQVDLFDRIIMLTLDYETCKRRREART----YYPPDDT-GYFDPVVWPHYEKNFEEARD 176 (225)
T ss_pred CcccccCcEEEEecceEEecchhhhhhhhheeeeccHHHHHHhhcccc----cCCCCCC-ccccCccchHHHHHHHHHHh
Confidence 345567899999999999889999999999999999999999998874 5555554 55666789999888776544
Q ss_pred Cc--cEEEcCC
Q 027528 107 YA--DIIIPRG 115 (222)
Q Consensus 107 ~A--Dlvi~~~ 115 (222)
.+ |..+-||
T Consensus 177 ~~~h~~~flng 187 (225)
T KOG3308|consen 177 RSRHDSLFLNG 187 (225)
T ss_pred hcccceeeecc
Confidence 43 5555544
No 57
>COG3954 PrkB Phosphoribulokinase [Energy production and conversion]
Probab=96.33 E-value=0.012 Score=49.04 Aligned_cols=87 Identities=21% Similarity=0.326 Sum_probs=71.5
Q ss_pred CeeEe-CCCcEEEEeccccCCC---hhhhccCCeEEEEECCHHHHHHHHHhhcccccCCCHHHHHHHHHhccccchhhhc
Q 027528 26 PARRV-NPSDVILLEGILVFHD---SRVRELMNMKIFVDTDADVRLARRIRRDTVEKGRDIATVLDQYSKFVKPAFDDFI 101 (222)
Q Consensus 26 ~~~~v-~~~~vvIvEGi~~l~~---~~l~~~~D~~Ifvd~d~d~rl~Rri~RD~~~rg~~~~~~~~~~~~~~~p~~~~~i 101 (222)
.+..+ ++.+++.-||+++--- -.+....|++|=+-.=-.+.-...+.||..+||+|.|.+.+.... .+|.|..||
T Consensus 116 pW~~lpe~sDvLFYEGLHGgvVt~~~nvAqHvDlliGvVPivNLEWIQK~~RDt~~RGhSrEAVmDsivR-sMdDYinyI 194 (289)
T COG3954 116 PWQPLPEPTDVLFYEGLHGGVVTPQHNVAQHVDLLVGVVPIVNLEWIQKLIRDTSERGHSREAVMDSVVR-SMDDYINYI 194 (289)
T ss_pred CcccCCCccceeeeeccccceecCcccHhhhhceeeeeeeEeeHHHHHHHHhcccccCccHHHHHHHHHH-hhhhHHhhc
Confidence 45555 4689999999998321 256788999998887777777789999999999999999999886 699999999
Q ss_pred cccCCCccEEEc
Q 027528 102 LPTKKYADIIIP 113 (222)
Q Consensus 102 ~p~~~~ADlvi~ 113 (222)
-|+-...|+-+.
T Consensus 195 tPQFSrThINFQ 206 (289)
T COG3954 195 TPQFSRTHINFQ 206 (289)
T ss_pred Ccccccccccee
Confidence 999888886543
No 58
>KOG3220 consensus Similar to bacterial dephospho-CoA kinase [Coenzyme transport and metabolism]
Probab=96.28 E-value=0.018 Score=48.13 Aligned_cols=78 Identities=21% Similarity=0.342 Sum_probs=62.9
Q ss_pred EeCCCcEEEEeccccCCChhhhccCCeEEEEECCHHHHHHHHHhhcccccCCCHHHHHHHHHhccccchhhhccccCCCc
Q 027528 29 RVNPSDVILLEGILVFHDSRVRELMNMKIFVDTDADVRLARRIRRDTVEKGRDIATVLDQYSKFVKPAFDDFILPTKKYA 108 (222)
Q Consensus 29 ~v~~~~vvIvEGi~~l~~~~l~~~~D~~Ifvd~d~d~rl~Rri~RD~~~rg~~~~~~~~~~~~~~~p~~~~~i~p~~~~A 108 (222)
.+.+..++|++=..+|- -.+..+...+|.+.||.++.++|.+.|| |-|.+++.++... ..|... -.+.|
T Consensus 103 ~l~G~r~ivlDiPLLFE-~~~~~~~~~tvvV~cd~~~Ql~Rl~~Rd----~lse~dAe~Rl~s-Qmp~~~-----k~~~a 171 (225)
T KOG3220|consen 103 LLRGYRVIVLDIPLLFE-AKLLKICHKTVVVTCDEELQLERLVERD----ELSEEDAENRLQS-QMPLEK-----KCELA 171 (225)
T ss_pred HhcCCeEEEEechHHHH-HhHHhheeeEEEEEECcHHHHHHHHHhc----cccHHHHHHHHHh-cCCHHH-----HHHhh
Confidence 34678999999988874 2577889999999999999999999999 5788888777765 455433 47889
Q ss_pred cEEEcCCCC
Q 027528 109 DIIIPRGGD 117 (222)
Q Consensus 109 Dlvi~~~~~ 117 (222)
|+||+|+.+
T Consensus 172 ~~Vi~Nng~ 180 (225)
T KOG3220|consen 172 DVVIDNNGS 180 (225)
T ss_pred heeecCCCC
Confidence 999997755
No 59
>PRK07261 topology modulation protein; Provisional
Probab=96.15 E-value=0.0021 Score=52.04 Aligned_cols=53 Identities=15% Similarity=0.182 Sum_probs=42.2
Q ss_pred CCcEEEEeccccC-CChhhhccCCeEEEEECCHHHHHHHHHhhcccccCCCHHHH
Q 027528 32 PSDVILLEGILVF-HDSRVRELMNMKIFVDTDADVRLARRIRRDTVEKGRDIATV 85 (222)
Q Consensus 32 ~~~vvIvEGi~~l-~~~~l~~~~D~~Ifvd~d~d~rl~Rri~RD~~~rg~~~~~~ 85 (222)
... .|+||.|.- ..+..-+..|..||+|+|..+++.|.+.|++..+|++.+++
T Consensus 58 ~~~-wIidg~~~~~~~~~~l~~ad~vI~Ld~p~~~~~~R~lkR~~~~rg~~r~~l 111 (171)
T PRK07261 58 KHD-WIIDGNYSWCLYEERMQEADQIIFLNFSRFNCLYRAFKRYLKYRGKTRESM 111 (171)
T ss_pred CCC-EEEcCcchhhhHHHHHHHCCEEEEEcCCHHHHHHHHHHHHHHHcCCcCccc
Confidence 344 899999984 22344457899999999999999999999998788766554
No 60
>PRK00131 aroK shikimate kinase; Reviewed
Probab=96.13 E-value=0.034 Score=43.91 Aligned_cols=94 Identities=16% Similarity=0.220 Sum_probs=52.2
Q ss_pred CcEEEEeccccCCChhhhcc---CCeEEEEECCHHHHHHHHHhhcccccC--CCHHHHHHHHHhccccchhhhccccCCC
Q 027528 33 SDVILLEGILVFHDSRVREL---MNMKIFVDTDADVRLARRIRRDTVEKG--RDIATVLDQYSKFVKPAFDDFILPTKKY 107 (222)
Q Consensus 33 ~~vvIvEGi~~l~~~~l~~~---~D~~Ifvd~d~d~rl~Rri~RD~~~rg--~~~~~~~~~~~~~~~p~~~~~i~p~~~~ 107 (222)
.++||+-|......+..++. ..+.||+++|.+.+..|...|...... .+..+.+..+.....+.| ...
T Consensus 74 ~~~vi~~g~~~~~~~~~r~~l~~~~~~v~l~~~~~~~~~R~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~-------~~~ 146 (175)
T PRK00131 74 HNLVISTGGGAVLREENRALLRERGTVVYLDASFEELLRRLRRDRNRPLLQTNDPKEKLRDLYEERDPLY-------EEV 146 (175)
T ss_pred CCCEEEeCCCEeecHHHHHHHHhCCEEEEEECCHHHHHHHhcCCCCCCcCCCCChHHHHHHHHHHHHHHH-------Hhh
Confidence 34566666544334555543 369999999999987777665431111 122333322222223333 345
Q ss_pred ccEEEcCCCCc-hhhHHHHHHHHHHHh
Q 027528 108 ADIIIPRGGDN-HVAIDLIVQHIRTKL 133 (222)
Q Consensus 108 ADlvi~~~~~~-~~~~~~~~~~i~~~l 133 (222)
||++|+.+..+ .-..+.|.+++...|
T Consensus 147 ~dl~idt~~~~~~e~~~~I~~~v~~~~ 173 (175)
T PRK00131 147 ADITVETDGRSPEEVVNEILEKLEAAW 173 (175)
T ss_pred cCeEEeCCCCCHHHHHHHHHHHHHhhc
Confidence 89999865444 344566777765544
No 61
>PRK09518 bifunctional cytidylate kinase/GTPase Der; Reviewed
Probab=96.00 E-value=0.028 Score=55.36 Aligned_cols=94 Identities=16% Similarity=0.171 Sum_probs=67.8
Q ss_pred EEEEeccccCCChhhhccCCeEEEEECCHHHHHHHHHhhcccccCCCHHHHHHHHHhccccchhhhccccCCCcc-EEEc
Q 027528 35 VILLEGILVFHDSRVRELMNMKIFVDTDADVRLARRIRRDTVEKGRDIATVLDQYSKFVKPAFDDFILPTKKYAD-IIIP 113 (222)
Q Consensus 35 vvIvEGi~~l~~~~l~~~~D~~Ifvd~d~d~rl~Rri~RD~~~rg~~~~~~~~~~~~~~~p~~~~~i~p~~~~AD-lvi~ 113 (222)
=||+||=-+-. -+-+-.|+|||++++.++|-.||..++.. .+.+++++....+..-.. .++.|.+...| ++|+
T Consensus 139 ~~v~eGRdigt--vv~p~a~~K~~l~A~~~~Ra~Rr~~~~~~---~~~~~~~~~~~~Rd~~d~-R~~~pl~~~~da~~id 212 (712)
T PRK09518 139 GIVAEGRDITT--VVAPDAEVRILLTAREEVRQARRSGQDRS---ETPGVVLEDVAARDEADS-KVTSFLSAADGVTTLD 212 (712)
T ss_pred cEEEecCccce--EEecCCCeEEEEECCHHHHHHHHHHhhhc---CCHHHHHHHHHHHhhhcc-cccCCCCCCCCeEEEE
Confidence 48899966542 34456799999999999999999999753 789999999888888888 88999665555 5566
Q ss_pred CCCCc-hhhHHHHHHHHHHHhc
Q 027528 114 RGGDN-HVAIDLIVQHIRTKLG 134 (222)
Q Consensus 114 ~~~~~-~~~~~~~~~~i~~~l~ 134 (222)
++.-+ +-.++.+.+.|...+.
T Consensus 213 ts~~~~~~v~~~i~~~i~~~~~ 234 (712)
T PRK09518 213 NSDLDFDETLDLLIGLVEDAIE 234 (712)
T ss_pred CCCCCHHHHHHHHHHHHHhhhh
Confidence 54333 2334455555544443
No 62
>PRK11860 bifunctional 3-phosphoshikimate 1-carboxyvinyltransferase/cytidine monophosphate kinase; Provisional
Probab=95.87 E-value=0.034 Score=54.34 Aligned_cols=94 Identities=18% Similarity=0.243 Sum_probs=66.9
Q ss_pred EEEEeccccCCChhhhccCCeEEEEECCHHHHHHHHHhhcccccC--CCHHHHHHHHHhccccchhhhccccCCCcc-EE
Q 027528 35 VILLEGILVFHDSRVRELMNMKIFVDTDADVRLARRIRRDTVEKG--RDIATVLDQYSKFVKPAFDDFILPTKKYAD-II 111 (222)
Q Consensus 35 vvIvEGi~~l~~~~l~~~~D~~Ifvd~d~d~rl~Rri~RD~~~rg--~~~~~~~~~~~~~~~p~~~~~i~p~~~~AD-lv 111 (222)
=||+||=-.-. -+-+-.|+|||++++.++|-.||...-. ++| -+.+++++....++.-....++.|.+.-.| ++
T Consensus 558 ~~v~eGRdigt--vv~p~a~~kifl~a~~~~Ra~Rr~~~~~-~~~~~~~~~~~~~~~~~Rd~~d~~R~~~pl~~~~da~~ 634 (661)
T PRK11860 558 GLVADGRDMGT--VIFPDAALKVFLTASAEARAERRYKQLI-SKGISANIADLLADLEARDARDTQRSVAPLKPAQDALL 634 (661)
T ss_pred CEEEECCCCcc--EECCCCCeEEEEECChhHHHHHHHHHHH-hCCCCCCHHHHHHHHHHHhHHhhcCCCCCCccCCCEEE
Confidence 37999965532 3445589999999999999999987533 234 488999998888888888889999877656 45
Q ss_pred EcCCCCchhhHHHHHHHHHHHhc
Q 027528 112 IPRGGDNHVAIDLIVQHIRTKLG 134 (222)
Q Consensus 112 i~~~~~~~~~~~~~~~~i~~~l~ 134 (222)
|+++. +.++.+++.|.+.+.
T Consensus 635 idts~---~~~~~v~~~i~~~i~ 654 (661)
T PRK11860 635 LDNSD---LTIEQAVAQVLDWWQ 654 (661)
T ss_pred EECCC---CCHHHHHHHHHHHHH
Confidence 55442 345555555555543
No 63
>COG0237 CoaE Dephospho-CoA kinase [Coenzyme metabolism]
Probab=95.83 E-value=0.039 Score=46.07 Aligned_cols=73 Identities=23% Similarity=0.351 Sum_probs=52.1
Q ss_pred EEEEeccccCCChhhhccCCeEEEEECCHHHHHHHHHhhcccccCCCHHHHHHHHHhccccchhhhccccCCCccEEEcC
Q 027528 35 VILLEGILVFHDSRVRELMNMKIFVDTDADVRLARRIRRDTVEKGRDIATVLDQYSKFVKPAFDDFILPTKKYADIIIPR 114 (222)
Q Consensus 35 vvIvEGi~~l~~~~l~~~~D~~Ifvd~d~d~rl~Rri~RD~~~rg~~~~~~~~~~~~~~~p~~~~~i~p~~~~ADlvi~~ 114 (222)
++++|=.+.+- ......+|..|.|++|++++++|.++|| |.|.+++...... .+|..++ ...||+|+.|
T Consensus 107 ~~~~eiplL~e-~~~~~~~d~Vi~V~a~~e~r~eRl~~R~----~~~~e~~~~~~~~-Q~~~~ek-----~~~ad~vi~n 175 (201)
T COG0237 107 YVVLEIPLLFE-AGGEKYFDKVIVVYAPPEIRLERLMKRD----GLDEEDAEARLAS-QRDLEEK-----LALADVVIDN 175 (201)
T ss_pred ceEEEchHHHh-ccccccCCEEEEEECCHHHHHHHHHhcC----CCCHHHHHHHHHh-cCCHHHH-----HhhcCChhhc
Confidence 66666555542 2244458999999999999999999998 4676776665544 4555443 7899999987
Q ss_pred CCCc
Q 027528 115 GGDN 118 (222)
Q Consensus 115 ~~~~ 118 (222)
+..-
T Consensus 176 ~~~i 179 (201)
T COG0237 176 DGSI 179 (201)
T ss_pred CCCH
Confidence 7553
No 64
>PRK13946 shikimate kinase; Provisional
Probab=95.76 E-value=0.078 Score=43.12 Aligned_cols=94 Identities=21% Similarity=0.298 Sum_probs=54.1
Q ss_pred CCcEEEEeccccCCChhhhcc---CCeEEEEECCHHHHHHHHHhhcccc--cCCCHHHHHHHHHhccccchhhhccccCC
Q 027528 32 PSDVILLEGILVFHDSRVREL---MNMKIFVDTDADVRLARRIRRDTVE--KGRDIATVLDQYSKFVKPAFDDFILPTKK 106 (222)
Q Consensus 32 ~~~vvIvEGi~~l~~~~l~~~---~D~~Ifvd~d~d~rl~Rri~RD~~~--rg~~~~~~~~~~~~~~~p~~~~~i~p~~~ 106 (222)
..+.||..|.-.+..+..+.+ .++.||+++|.++++.|...|...- .+.++.+.+.+......|.| .
T Consensus 79 ~~~~Vi~~ggg~~~~~~~r~~l~~~~~~v~L~a~~e~~~~Rl~~r~~rp~~~~~~~~~~i~~~~~~R~~~y--------~ 150 (184)
T PRK13946 79 GGPLVLATGGGAFMNEETRAAIAEKGISVWLKADLDVLWERVSRRDTRPLLRTADPKETLARLMEERYPVY--------A 150 (184)
T ss_pred cCCeEEECCCCCcCCHHHHHHHHcCCEEEEEECCHHHHHHHhcCCCCCCcCCCCChHHHHHHHHHHHHHHH--------H
Confidence 346777776554444543332 5789999999999999987775321 12344444444333333432 3
Q ss_pred CccEEEcCCCCc-hhhHHHHHHHHHHHh
Q 027528 107 YADIIIPRGGDN-HVAIDLIVQHIRTKL 133 (222)
Q Consensus 107 ~ADlvi~~~~~~-~~~~~~~~~~i~~~l 133 (222)
.||++|+...-+ +-.++.+++.+...+
T Consensus 151 ~~dl~i~~~~~~~~~~~~~i~~~i~~~~ 178 (184)
T PRK13946 151 EADLTVASRDVPKEVMADEVIEALAAYL 178 (184)
T ss_pred hCCEEEECCCCCHHHHHHHHHHHHHHhh
Confidence 479999744332 234455555555544
No 65
>PRK05057 aroK shikimate kinase I; Reviewed
Probab=95.35 E-value=0.17 Score=40.75 Aligned_cols=92 Identities=18% Similarity=0.304 Sum_probs=52.6
Q ss_pred CcEEEEeccccCCChhhhc---cCCeEEEEECCHHHHHHHHHhhcccc--cCCCHHHHHHHHHhccccchhhhccccCCC
Q 027528 33 SDVILLEGILVFHDSRVRE---LMNMKIFVDTDADVRLARRIRRDTVE--KGRDIATVLDQYSKFVKPAFDDFILPTKKY 107 (222)
Q Consensus 33 ~~vvIvEGi~~l~~~~l~~---~~D~~Ifvd~d~d~rl~Rri~RD~~~--rg~~~~~~~~~~~~~~~p~~~~~i~p~~~~ 107 (222)
..+|+.-|-.+...+..+. -.+..||+++|.+++..|...+..+- .+.+..+.+........|.|. +.
T Consensus 74 ~~~vi~~ggg~v~~~~~~~~l~~~~~vv~L~~~~e~~~~Ri~~~~~rP~~~~~~~~~~~~~l~~~R~~~Y~-------~~ 146 (172)
T PRK05057 74 QGIVLATGGGSVKSRETRNRLSARGVVVYLETTIEKQLARTQRDKKRPLLQVDDPREVLEALANERNPLYE-------EI 146 (172)
T ss_pred CCEEEEcCCchhCCHHHHHHHHhCCEEEEEeCCHHHHHHHHhCCCCCCCCCCCCHHHHHHHHHHHHHHHHH-------hh
Confidence 4566666655554554333 35799999999999999875443220 123334445444444566653 44
Q ss_pred ccEEEcCCCCchhhHHHHHHHHHHHhc
Q 027528 108 ADIIIPRGGDNHVAIDLIVQHIRTKLG 134 (222)
Q Consensus 108 ADlvi~~~~~~~~~~~~~~~~i~~~l~ 134 (222)
||++|+....+ .+.+.+.|.+++.
T Consensus 147 Ad~~idt~~~s---~~ei~~~i~~~l~ 170 (172)
T PRK05057 147 ADVTIRTDDQS---AKVVANQIIHMLE 170 (172)
T ss_pred CCEEEECCCCC---HHHHHHHHHHHHh
Confidence 99999855333 3333444444443
No 66
>COG0283 Cmk Cytidylate kinase [Nucleotide transport and metabolism]
Probab=95.14 E-value=0.1 Score=44.05 Aligned_cols=95 Identities=19% Similarity=0.239 Sum_probs=66.2
Q ss_pred EEEEeccccCCChhhhccCCeEEEEECCHHHHHHHHHhhcccccCCC--HHHHHHHHHhccccchhhhccccCCCccEEE
Q 027528 35 VILLEGILVFHDSRVRELMNMKIFVDTDADVRLARRIRRDTVEKGRD--IATVLDQYSKFVKPAFDDFILPTKKYADIII 112 (222)
Q Consensus 35 vvIvEGi~~l~~~~l~~~~D~~Ifvd~d~d~rl~Rri~RD~~~rg~~--~~~~~~~~~~~~~p~~~~~i~p~~~~ADlvi 112 (222)
=+|+||==.-. -+-+-.++|||+++++++|-+||..--. +.|.+ .+++++....++......-+.|.+...|-++
T Consensus 122 ~~V~dGRDiGT--vV~PdA~lKiFLtAS~e~RA~RR~~q~~-~~g~~~~~e~ll~eI~~RD~~D~~R~~~PLk~A~DA~~ 198 (222)
T COG0283 122 GIVADGRDIGT--VVFPDAELKIFLTASPEERAERRYKQLQ-AKGFSEVFEELLAEIKERDERDSNRAVAPLKPAEDALL 198 (222)
T ss_pred CEEEecCCCcc--eECCCCCeEEEEeCCHHHHHHHHHHHHH-hccCcchHHHHHHHHHHhhhccccCcCCCCcCCCCeEE
Confidence 36777732211 2234578999999999999999987654 44533 5888888888887777888999988888665
Q ss_pred cCCCCchhhHHHHHHHHHHHhc
Q 027528 113 PRGGDNHVAIDLIVQHIRTKLG 134 (222)
Q Consensus 113 ~~~~~~~~~~~~~~~~i~~~l~ 134 (222)
-.. ..+.++.++++|.+...
T Consensus 199 iDT--s~msieeVv~~il~~~~ 218 (222)
T COG0283 199 LDT--SSLSIEEVVEKILELIR 218 (222)
T ss_pred EEC--CCCcHHHHHHHHHHHHH
Confidence 322 23566677777665543
No 67
>PF02224 Cytidylate_kin: Cytidylate kinase; InterPro: IPR011994 Cytidylate kinase (2.7.4.14 from EC) catalyses the phosphorylation of cytidine 5'-monophosphate (dCMP) to cytidine 5'-diphosphate (dCDP) in the presence of ATP or GTP. ; GO: 0004127 cytidylate kinase activity, 0005524 ATP binding, 0006139 nucleobase-containing compound metabolic process; PDB: 3R20_A 4DIE_A 3R8C_B 2H92_B 1KDT_A 1KDP_B 2FEO_A 1KDO_B 2CMK_A 1KDR_A ....
Probab=94.67 E-value=0.11 Score=41.82 Aligned_cols=92 Identities=25% Similarity=0.331 Sum_probs=55.9
Q ss_pred CcEEEEeccccCCChhhhccCCeEEEEECCHHHHHHHHHhhcccccC--CCHHHHHHHHHhccccchhhhccccCCCccE
Q 027528 33 SDVILLEGILVFHDSRVRELMNMKIFVDTDADVRLARRIRRDTVEKG--RDIATVLDQYSKFVKPAFDDFILPTKKYADI 110 (222)
Q Consensus 33 ~~vvIvEGi~~l~~~~l~~~~D~~Ifvd~d~d~rl~Rri~RD~~~rg--~~~~~~~~~~~~~~~p~~~~~i~p~~~~ADl 110 (222)
..=+|+||==.-. -+-+-.++|||+++++++|-.||..=-. +.| -+.+++++....+..-....-+.|.+.-.|-
T Consensus 62 ~~~vV~eGRDigT--vVfPdA~~KifLtAs~e~RA~RR~~e~~-~~g~~~~~e~v~~~i~~RD~~D~~R~~aPL~~a~DA 138 (157)
T PF02224_consen 62 KGGVVMEGRDIGT--VVFPDADLKIFLTASPEVRARRRYKELQ-EKGKKVSYEEVLEDIKERDERDSNREVAPLKKAEDA 138 (157)
T ss_dssp TSCEEEEESSCCC--CCCTT-SEEEEEE--HHHHHHHHHHHHH-HTT----HHHHHHHHHHHHHHHHCTSSS-SS--TTS
T ss_pred cCCeEEecCCCce--EEcCCCCEEEEEECCHHHHHHHHHHHHH-hCCCCCCHHHHHHHHHhhChhhccCccCCCccCCCe
Confidence 3556788843321 2334569999999999999999885432 334 3688998888877777777778898777664
Q ss_pred -EEcCCCCchhhHHHHHHHHH
Q 027528 111 -IIPRGGDNHVAIDLIVQHIR 130 (222)
Q Consensus 111 -vi~~~~~~~~~~~~~~~~i~ 130 (222)
+|+++ .+.++.+++.|.
T Consensus 139 i~IDts---~lti~evv~~il 156 (157)
T PF02224_consen 139 IVIDTS---NLTIEEVVEKIL 156 (157)
T ss_dssp EEEETT---TS-HHHHHHHHH
T ss_pred EEEECC---CCCHHHHHHHHh
Confidence 45533 245666666653
No 68
>PRK06762 hypothetical protein; Provisional
Probab=94.64 E-value=0.23 Score=39.29 Aligned_cols=60 Identities=17% Similarity=0.244 Sum_probs=40.5
Q ss_pred CCCcEEEEeccccCCC-----hhhhccCC---eEEEEECCHHHHHHHHHhhcccccCCCHHHHHHHHHh
Q 027528 31 NPSDVILLEGILVFHD-----SRVRELMN---MKIFVDTDADVRLARRIRRDTVEKGRDIATVLDQYSK 91 (222)
Q Consensus 31 ~~~~vvIvEGi~~l~~-----~~l~~~~D---~~Ifvd~d~d~rl~Rri~RD~~~rg~~~~~~~~~~~~ 91 (222)
.....+|++|.+.-.. ..++...+ ..||+++|.++++.|..+|+. ..+.+.+.+-.+|..
T Consensus 66 ~~g~~vild~~~~~~~~~~~~~~l~~~~~~~~~~v~Ldap~e~~~~R~~~R~~-~~~~~~~~l~~~~~~ 133 (166)
T PRK06762 66 GHCEFVILEGILNSDRYGPMLKELIHLFRGNAYTYYFDLSFEETLRRHSTRPK-SHEFGEDDMRRWWNP 133 (166)
T ss_pred hCCCEEEEchhhccHhHHHHHHHHHHhcCCCeEEEEEeCCHHHHHHHHhcccc-cccCCHHHHHHHHhh
Confidence 3457899999974211 23333333 899999999999999999975 234555555555554
No 69
>PRK13949 shikimate kinase; Provisional
Probab=94.16 E-value=0.29 Score=39.40 Aligned_cols=38 Identities=13% Similarity=0.135 Sum_probs=27.3
Q ss_pred CcEEEEeccccCCChh---hhccCCeEEEEECCHHHHHHHH
Q 027528 33 SDVILLEGILVFHDSR---VRELMNMKIFVDTDADVRLARR 70 (222)
Q Consensus 33 ~~vvIvEGi~~l~~~~---l~~~~D~~Ifvd~d~d~rl~Rr 70 (222)
.+.||..|-.+...++ +-.-.++.||+++|.++...|.
T Consensus 71 ~~~vis~Ggg~~~~~~~~~~l~~~~~vi~L~~~~~~~~~Ri 111 (169)
T PRK13949 71 EDVVISTGGGAPCFFDNMELMNASGTTVYLKVSPEVLFVRL 111 (169)
T ss_pred CCEEEEcCCcccCCHHHHHHHHhCCeEEEEECCHHHHHHHH
Confidence 5678888877765542 2234689999999999966554
No 70
>PRK04040 adenylate kinase; Provisional
Probab=94.12 E-value=0.31 Score=40.06 Aligned_cols=95 Identities=14% Similarity=0.169 Sum_probs=57.0
Q ss_pred CCcEEEEeccccCCChh----------hhc-cCCeEEEEECCHHHHHHHHHhhcccccCCCHHHHHHHHHhccccchhhh
Q 027528 32 PSDVILLEGILVFHDSR----------VRE-LMNMKIFVDTDADVRLARRIRRDTVEKGRDIATVLDQYSKFVKPAFDDF 100 (222)
Q Consensus 32 ~~~vvIvEGi~~l~~~~----------l~~-~~D~~Ifvd~d~d~rl~Rri~RD~~~rg~~~~~~~~~~~~~~~p~~~~~ 100 (222)
....+|++|-+++..+. +.+ ..|..||++++++.-+.||+.-+-+.|+..-++.++.++.. -..+..+
T Consensus 79 ~~~~~~~~~h~~i~~~~g~~~~~~~~~~~~l~pd~ii~l~a~p~~i~~Rrl~d~~R~R~~es~e~I~~~~~~-a~~~a~~ 157 (188)
T PRK04040 79 GEGPVIVDTHATIKTPAGYLPGLPEWVLEELNPDVIVLIEADPDEILMRRLRDETRRRDVETEEDIEEHQEM-NRAAAMA 157 (188)
T ss_pred cCCCEEEeeeeeeccCCCCcCCCCHHHHhhcCCCEEEEEeCCHHHHHHHHhcccccCCCCCCHHHHHHHHHH-HHHHHHH
Confidence 34668889988644332 233 36789999999998888888532223455556666666654 2233344
Q ss_pred ccccCCCccEEEcCCCC-chhhHHHHHH
Q 027528 101 ILPTKKYADIIIPRGGD-NHVAIDLIVQ 127 (222)
Q Consensus 101 i~p~~~~ADlvi~~~~~-~~~~~~~~~~ 127 (222)
+.-.....+.+|.|... -+.+.+.+++
T Consensus 158 ~a~~~g~~~~iI~N~d~~~e~a~~~i~~ 185 (188)
T PRK04040 158 YAVLTGATVKIVENREGLLEEAAEEIVE 185 (188)
T ss_pred HHHhcCCeEEEEECCCCCHHHHHHHHHH
Confidence 44455667888876532 2344444443
No 71
>cd02019 NK Nucleoside/nucleotide kinase (NK) is a protein superfamily consisting of multiple families of enzymes that share structural similarity and are functionally related to the catalysis of the reversible phosphate group transfer from nucleoside triphosphates to nucleosides/nucleotides, nucleoside monophosphates, or sugars. Members of this family play a wide variety of essential roles in nucleotide metabolism, the biosynthesis of coenzymes and aromatic compounds, as well as the metabolism of sugar and sulfate.
Probab=93.89 E-value=0.046 Score=37.36 Aligned_cols=27 Identities=37% Similarity=0.823 Sum_probs=25.3
Q ss_pred EEEEeccccCCCh---hhhccCCeEEEEEC
Q 027528 35 VILLEGILVFHDS---RVRELMNMKIFVDT 61 (222)
Q Consensus 35 vvIvEGi~~l~~~---~l~~~~D~~Ifvd~ 61 (222)
++|+||.+++.+. ++++..|++||+|+
T Consensus 34 ~~I~eg~~~~~~~~~~~~~~~~d~~Iyld~ 63 (69)
T cd02019 34 IVILEGLYASYKSRDARIRDLADLKIYLDA 63 (69)
T ss_pred EEEecchhhhhhhHHhhccccccEEEEEEe
Confidence 9999999999876 78999999999998
No 72
>PRK00625 shikimate kinase; Provisional
Probab=93.69 E-value=0.51 Score=38.29 Aligned_cols=74 Identities=12% Similarity=0.057 Sum_probs=46.6
Q ss_pred CcEEEEeccccCCChhhhccC---CeEEEEECCHHHHHHHHHhhcccccCCCHHHHHHHHHhccccchhhhccccCCCcc
Q 027528 33 SDVILLEGILVFHDSRVRELM---NMKIFVDTDADVRLARRIRRDTVEKGRDIATVLDQYSKFVKPAFDDFILPTKKYAD 109 (222)
Q Consensus 33 ~~vvIvEGi~~l~~~~l~~~~---D~~Ifvd~d~d~rl~Rri~RD~~~rg~~~~~~~~~~~~~~~p~~~~~i~p~~~~AD 109 (222)
.+.||.-|--....++....+ +..||+++|.++...|...|+......+.+.+.+.|.. ..|.|+ +.||
T Consensus 73 ~~~VIs~GGg~~~~~e~~~~l~~~~~Vv~L~~~~e~l~~Rl~~R~~~~~~~~~~~~~~ll~~-R~~~Y~-------~~ad 144 (173)
T PRK00625 73 IPSIVALGGGTLMIEPSYAHIRNRGLLVLLSLPIATIYQRLQKRGLPERLKHAPSLEEILSQ-RIDRMR-------SIAD 144 (173)
T ss_pred CCeEEECCCCccCCHHHHHHHhcCCEEEEEECCHHHHHHHHhcCCCCcccCcHHHHHHHHHH-HHHHHH-------HHCC
Confidence 345555553333345544443 68899999999999998888765433344555555544 466653 3689
Q ss_pred EEEcC
Q 027528 110 IIIPR 114 (222)
Q Consensus 110 lvi~~ 114 (222)
++|+.
T Consensus 145 ~~i~~ 149 (173)
T PRK00625 145 YIFSL 149 (173)
T ss_pred EEEeC
Confidence 88863
No 73
>cd02030 NDUO42 NADH:Ubiquinone oxioreductase, 42 kDa (NDUO42) is a family of proteins that are highly similar to deoxyribonucleoside kinases (dNK). Members of this family have been identified as one of the subunits of NADH:Ubiquinone oxioreductase (complex I), a multi-protein complex located in the inner mitochondrial membrane. The main function of the complex is to transport electrons from NADH to ubiquinone, which is accompanied by the translocation of protons from the mitochondrial matrix to the inter membrane space.
Probab=93.44 E-value=0.17 Score=42.46 Aligned_cols=72 Identities=15% Similarity=0.227 Sum_probs=46.0
Q ss_pred CCeEEEEECCHHHHHHHHHhhcccccCCCHH-HHHHHHHhccccchhhhccc-cCCCccEEEcCCCCchhhHHHHHHHHH
Q 027528 53 MNMKIFVDTDADVRLARRIRRDTVEKGRDIA-TVLDQYSKFVKPAFDDFILP-TKKYADIIIPRGGDNHVAIDLIVQHIR 130 (222)
Q Consensus 53 ~D~~Ifvd~d~d~rl~Rri~RD~~~rg~~~~-~~~~~~~~~~~p~~~~~i~p-~~~~ADlvi~~~~~~~~~~~~~~~~i~ 130 (222)
-|+.||+++|++.++.|.-.|. +..+ .+-..|.....-.|.++..+ ....+++++-++ ++.-.++.+++.|.
T Consensus 143 Pd~~i~l~~~~~~~~~Ri~~R~-----~~~e~~~~~~yl~~l~~~y~~~~~~~~~~~~~~i~id~-~~~~~~e~i~~~I~ 216 (219)
T cd02030 143 PHLVIYLDVPVPEVQKRIKKRG-----DPHEMKVTSAYLQDIENAYKKTFLPEISEHSEVLQYDW-TEAGDTEKVVEDIE 216 (219)
T ss_pred CCEEEEEeCCHHHHHHHHHHcC-----CchhhcccHHHHHHHHHHHHHHHHHhhccCCCEEEEeC-CChhhHHHHHHHHH
Confidence 4899999999999999977764 2211 22233544556667666655 455678877654 34455556666554
No 74
>COG1428 Deoxynucleoside kinases [Nucleotide transport and metabolism]
Probab=93.00 E-value=0.23 Score=41.88 Aligned_cols=78 Identities=21% Similarity=0.327 Sum_probs=52.2
Q ss_pred cCCeEEEEECCHHHHHHHHHhhcccccCCCHH-HHH---HHHHhccccchhhhccccCCCccEEEcCC----CCchhhHH
Q 027528 52 LMNMKIFVDTDADVRLARRIRRDTVEKGRDIA-TVL---DQYSKFVKPAFDDFILPTKKYADIIIPRG----GDNHVAID 123 (222)
Q Consensus 52 ~~D~~Ifvd~d~d~rl~Rri~RD~~~rg~~~~-~~~---~~~~~~~~p~~~~~i~p~~~~ADlvi~~~----~~~~~~~~ 123 (222)
.-|+-||+|++.++-+.|-.+| ||+.| ... ..|.+.....|..|+.-.-...++.|+.. ..++..+.
T Consensus 126 ~PdllIyLd~~~e~~l~RI~~R-----gR~~E~~~~~~~~~Y~~~l~~~Y~~~~~~~~~~~~l~i~~~~~D~~~~~~d~~ 200 (216)
T COG1428 126 RPDLLIYLDASLETLLRRIAKR-----GRPFEIDNFDENKDYLKDLHRRYDDWFENYDACPVLGIDGDSIDFVNNEQDLE 200 (216)
T ss_pred CCCEEEEEeCCHHHHHHHHHHh-----CCCcccccccchHHHHHHHHHHHHHHHHhcccCCeeeeccceecccCCHHHHH
Confidence 5689999999999998888776 56655 111 12444445566666666555566776532 34556777
Q ss_pred HHHHHHHHHhc
Q 027528 124 LIVQHIRTKLG 134 (222)
Q Consensus 124 ~~~~~i~~~l~ 134 (222)
.++..|.+++.
T Consensus 201 ~v~~~I~~~~~ 211 (216)
T COG1428 201 KVLDQILAKLK 211 (216)
T ss_pred HHHHHHHHHHh
Confidence 88888888774
No 75
>PRK08356 hypothetical protein; Provisional
Probab=92.87 E-value=0.5 Score=38.68 Aligned_cols=93 Identities=16% Similarity=0.287 Sum_probs=51.3
Q ss_pred cEEEEeccccCCC-hhhhccCCeEEEEECCHHHHHHHHHhhccccc--CCCHHHHHHHHHhccccchhhhccccCCCccE
Q 027528 34 DVILLEGILVFHD-SRVRELMNMKIFVDTDADVRLARRIRRDTVEK--GRDIATVLDQYSKFVKPAFDDFILPTKKYADI 110 (222)
Q Consensus 34 ~vvIvEGi~~l~~-~~l~~~~D~~Ifvd~d~d~rl~Rri~RD~~~r--g~~~~~~~~~~~~~~~p~~~~~i~p~~~~ADl 110 (222)
..++++|.-.... ..+...-...||+++|.+++..|...|+.... ..+.+++...+.. ....|. ..-....||+
T Consensus 95 ~~ividG~r~~~q~~~l~~~~~~vi~l~~~~~~~~~Rl~~R~~~~~~~~~~~e~~~~~~~~-~~~l~~--~~~~~~~aD~ 171 (195)
T PRK08356 95 KNIAIDGVRSRGEVEAIKRMGGKVIYVEAKPEIRFERLRRRGAEKDKGIKSFEDFLKFDEW-EEKLYH--TTKLKDKADF 171 (195)
T ss_pred CeEEEcCcCCHHHHHHHHhcCCEEEEEECCHHHHHHHHHhcCCccccccccHHHHHHHHHH-HHHhhh--hhhHHHhCcE
Confidence 4689999944321 12344346899999999999998888864211 1244444333221 111111 1123468999
Q ss_pred EEcCCCCchhhHHHHHHHHHHHh
Q 027528 111 IIPRGGDNHVAIDLIVQHIRTKL 133 (222)
Q Consensus 111 vi~~~~~~~~~~~~~~~~i~~~l 133 (222)
+|.|..+ ++.+.+.|...+
T Consensus 172 vI~N~~~----~e~~~~~i~~~~ 190 (195)
T PRK08356 172 VIVNEGT----LEELRKKVEEIL 190 (195)
T ss_pred EEECCCC----HHHHHHHHHHHH
Confidence 9976422 334444444444
No 76
>TIGR02322 phosphon_PhnN phosphonate metabolism protein/1,5-bisphosphokinase (PRPP-forming) PhnN. Members of this family resemble PhnN of phosphonate utilization operons, where different such operons confer the ability to use somewhat different profiles of C-P bond-containing compounds (see PubMed:15231805), including phosphites as well as phosphonates. PhnN in E. coli shows considerable homology to guanylate kinases (EC 2.7.4.8), and has actually been shown to act as a ribose 1,5-bisphosphokinase (PRPP forming). This suggests an analogous kinase reaction for phosphonate metabolism, converting 5-phosphoalpha-1-(methylphosphono)ribose to methylphosphono-PRPP.
Probab=92.75 E-value=0.75 Score=36.76 Aligned_cols=85 Identities=16% Similarity=0.289 Sum_probs=50.4
Q ss_pred CCcEEEEeccccCCChhhhccCC--eEEEEECCHHHHHHHHHhhcccccCCCHHHHHHHHHhccccchhhhccccCCCcc
Q 027528 32 PSDVILLEGILVFHDSRVRELMN--MKIFVDTDADVRLARRIRRDTVEKGRDIATVLDQYSKFVKPAFDDFILPTKKYAD 109 (222)
Q Consensus 32 ~~~vvIvEGi~~l~~~~l~~~~D--~~Ifvd~d~d~rl~Rri~RD~~~rg~~~~~~~~~~~~~~~p~~~~~i~p~~~~AD 109 (222)
....||++|--... +.++..+. ..||+++|.++...|...|. +.+++.+..++.. .+.|. ...||
T Consensus 89 ~g~~vv~~g~~~~~-~~~~~~~~~~~~i~l~~~~~~~~~Rl~~R~----~~~~~~~~~rl~~--~~~~~------~~~~~ 155 (179)
T TIGR02322 89 AGDVVVVNGSRAVL-PEARQRYPNLLVVNITASPDVLAQRLAARG----RESREEIEERLAR--SARFA------AAPAD 155 (179)
T ss_pred cCCEEEEECCHHHH-HHHHHHCCCcEEEEEECCHHHHHHHHHHcC----CCCHHHHHHHHHH--Hhhcc------cccCC
Confidence 44578888875532 34444333 78999999999999988873 2355555555432 22221 15578
Q ss_pred EE-EcCCCCchhhHHHHHHHHHHHh
Q 027528 110 II-IPRGGDNHVAIDLIVQHIRTKL 133 (222)
Q Consensus 110 lv-i~~~~~~~~~~~~~~~~i~~~l 133 (222)
++ ++++.+ ++.+.+.|.+.|
T Consensus 156 ~~vi~~~~~----~ee~~~~i~~~l 176 (179)
T TIGR02322 156 VTTIDNSGS----LEVAGETLLRLL 176 (179)
T ss_pred EEEEeCCCC----HHHHHHHHHHHH
Confidence 77 444322 445556665555
No 77
>PF13207 AAA_17: AAA domain; PDB: 3AKC_A 3AKE_A 3AKD_A 2QL6_G 2QT1_A 2QSZ_A 2QSY_A 2QT0_A 2QG6_A 2P0E_A ....
Probab=92.63 E-value=0.047 Score=40.66 Aligned_cols=51 Identities=20% Similarity=0.330 Sum_probs=36.8
Q ss_pred CCCcEEEEeccccCCChh-hhccCCeEEEEECCHHHHHHHHHhhcccccCCCH
Q 027528 31 NPSDVILLEGILVFHDSR-VRELMNMKIFVDTDADVRLARRIRRDTVEKGRDI 82 (222)
Q Consensus 31 ~~~~vvIvEGi~~l~~~~-l~~~~D~~Ifvd~d~d~rl~Rri~RD~~~rg~~~ 82 (222)
.....+|+||.+. .... ..+..|..||++++.+.++.|+++|....+|++.
T Consensus 68 ~~~~~~ii~g~~~-~~~~~~~~~~~~~i~l~~~~~~~~~~~~~R~~~~~~r~~ 119 (121)
T PF13207_consen 68 PDNDNWIIDGSYE-SEMEIRLPEFDHVIYLDAPDEECRERRLKRRLRRRGRDR 119 (121)
T ss_dssp TT--EEEEECCSC-HCCHSCCHHGGCEEEEEEEEHHHHHHHHHHHHHHEESSC
T ss_pred CCCCeEEEeCCCc-cchhhhhhcCCEEEEEECCCHHHHHHHHHHHhHHcCCCC
Confidence 4678899999765 2222 2235679999999999899999999887777764
No 78
>PRK10078 ribose 1,5-bisphosphokinase; Provisional
Probab=92.42 E-value=0.86 Score=36.93 Aligned_cols=83 Identities=12% Similarity=0.188 Sum_probs=49.4
Q ss_pred CcEEEEeccccCCChhhhccC---CeEEEEECCHHHHHHHHHhhcccccCCCHHHHHHHHHhccccchhhhccccCCCcc
Q 027528 33 SDVILLEGILVFHDSRVRELM---NMKIFVDTDADVRLARRIRRDTVEKGRDIATVLDQYSKFVKPAFDDFILPTKKYAD 109 (222)
Q Consensus 33 ~~vvIvEGi~~l~~~~l~~~~---D~~Ifvd~d~d~rl~Rri~RD~~~rg~~~~~~~~~~~~~~~p~~~~~i~p~~~~AD 109 (222)
...||+.|--... ..++..+ -..||+++|.++...|...|+ +.+.+++.+++.. .+.| ..||
T Consensus 89 g~~VI~~G~~~~~-~~~~~~~~~~~~vi~l~~s~e~l~~RL~~R~----~~~~~~i~~rl~r--~~~~--------~~ad 153 (186)
T PRK10078 89 GFDVLVNGSRAHL-PQARARYQSALLPVCLQVSPEILRQRLENRG----RENASEINARLAR--AARY--------QPQD 153 (186)
T ss_pred CCEEEEeChHHHH-HHHHHHcCCCEEEEEEeCCHHHHHHHHHHhC----CCCHHHHHHHHHH--hhhh--------ccCC
Confidence 3446667775543 3444333 356899999999999988874 3366666666532 1111 2467
Q ss_pred -EEEcCCCCchhhHHHHHHHHHHHhc
Q 027528 110 -IIIPRGGDNHVAIDLIVQHIRTKLG 134 (222)
Q Consensus 110 -lvi~~~~~~~~~~~~~~~~i~~~l~ 134 (222)
++|+++.. ++.+.+.|...|.
T Consensus 154 ~~vi~~~~s----~ee~~~~i~~~l~ 175 (186)
T PRK10078 154 CHTLNNDGS----LRQSVDTLLTLLH 175 (186)
T ss_pred EEEEeCCCC----HHHHHHHHHHHHh
Confidence 66664432 4455666666664
No 79
>PRK14737 gmk guanylate kinase; Provisional
Probab=92.17 E-value=0.77 Score=37.62 Aligned_cols=74 Identities=12% Similarity=0.096 Sum_probs=45.0
Q ss_pred CCCcEEEEeccccCCChhhhccCC---eEEEEECCH-HHHHHHHHhhcccccCCCHHHHHHHHHhccccchhhhccccCC
Q 027528 31 NPSDVILLEGILVFHDSRVRELMN---MKIFVDTDA-DVRLARRIRRDTVEKGRDIATVLDQYSKFVKPAFDDFILPTKK 106 (222)
Q Consensus 31 ~~~~vvIvEGi~~l~~~~l~~~~D---~~Ifvd~d~-d~rl~Rri~RD~~~rg~~~~~~~~~~~~~~~p~~~~~i~p~~~ 106 (222)
....++|++.-.--. ..++..+. +.|||.+|. +....|+..|+ +.+.+++..+..+ ..+. .....
T Consensus 92 ~~g~~~i~d~~~~g~-~~l~~~~~~~~~~Ifi~pps~e~l~~RL~~R~----~~s~e~i~~Rl~~-~~~e-----~~~~~ 160 (186)
T PRK14737 92 KEGRSAIMDIDVQGA-KIIKEKFPERIVTIFIEPPSEEEWEERLIHRG----TDSEESIEKRIEN-GIIE-----LDEAN 160 (186)
T ss_pred HcCCeEEEEcCHHHH-HHHHHhCCCCeEEEEEECCCHHHHHHHHHhcC----CCCHHHHHHHHHH-HHHH-----Hhhhc
Confidence 455777777332211 24444443 689999964 66777777764 3466666666554 2322 22467
Q ss_pred CccEEEcCC
Q 027528 107 YADIIIPRG 115 (222)
Q Consensus 107 ~ADlvi~~~ 115 (222)
.||.+|.|.
T Consensus 161 ~~D~vI~N~ 169 (186)
T PRK14737 161 EFDYKIIND 169 (186)
T ss_pred cCCEEEECc
Confidence 899999876
No 80
>PRK03731 aroL shikimate kinase II; Reviewed
Probab=92.06 E-value=1.2 Score=35.27 Aligned_cols=89 Identities=16% Similarity=0.231 Sum_probs=49.2
Q ss_pred CCcEEEEecc-ccCCChhhh---ccCCeEEEEECCHHHHHHHHHhhcccc-----cCCCH-HHHHHHHHhccccchhhhc
Q 027528 32 PSDVILLEGI-LVFHDSRVR---ELMNMKIFVDTDADVRLARRIRRDTVE-----KGRDI-ATVLDQYSKFVKPAFDDFI 101 (222)
Q Consensus 32 ~~~vvIvEGi-~~l~~~~l~---~~~D~~Ifvd~d~d~rl~Rri~RD~~~-----rg~~~-~~~~~~~~~~~~p~~~~~i 101 (222)
...+||..|- +.+. +..+ .-.++.||+++|.++.+.|...|.... .|.+. +++.+.+.. ..+.|..
T Consensus 70 ~~~~vi~~ggg~vl~-~~~~~~l~~~~~~v~l~~~~~~~~~Rl~~r~~~~~rp~~~~~~~~~~~~~~~~~-r~~~y~~-- 145 (171)
T PRK03731 70 APSTVIATGGGIILT-EENRHFMRNNGIVIYLCAPVSVLANRLEANPEEDQRPTLTGKPISEEVAEVLAE-REALYRE-- 145 (171)
T ss_pred CCCeEEECCCCccCC-HHHHHHHHhCCEEEEEECCHHHHHHHHccccccccCCcCCCCChHHHHHHHHHH-HHHHHHH--
Confidence 3455666553 3443 3322 236799999999999998887763210 13333 334344443 4555532
Q ss_pred cccCCCccEEEcCCCCchhhHHHHHHHHHHHh
Q 027528 102 LPTKKYADIIIPRGGDNHVAIDLIVQHIRTKL 133 (222)
Q Consensus 102 ~p~~~~ADlvi~~~~~~~~~~~~~~~~i~~~l 133 (222)
.|+++|+... .++.+.+.|...+
T Consensus 146 -----~a~~~Id~~~----~~e~v~~~i~~~l 168 (171)
T PRK03731 146 -----VAHHIIDATQ----PPSQVVSEILSAL 168 (171)
T ss_pred -----hCCEEEcCCC----CHHHHHHHHHHHH
Confidence 4578887542 2344455554444
No 81
>PRK12269 bifunctional cytidylate kinase/ribosomal protein S1; Provisional
Probab=91.78 E-value=0.92 Score=45.84 Aligned_cols=93 Identities=14% Similarity=0.114 Sum_probs=63.8
Q ss_pred EEEEeccccCCChhhhccCCeEEEEECCHHHHHHHHHhhcccccCCCHHHHHHHHHhccccchhhhccccCCCccEEE-c
Q 027528 35 VILLEGILVFHDSRVRELMNMKIFVDTDADVRLARRIRRDTVEKGRDIATVLDQYSKFVKPAFDDFILPTKKYADIII-P 113 (222)
Q Consensus 35 vvIvEGi~~l~~~~l~~~~D~~Ifvd~d~d~rl~Rri~RD~~~rg~~~~~~~~~~~~~~~p~~~~~i~p~~~~ADlvi-~ 113 (222)
=+|+||==.-. -+-+-.|+|||++++.++|-.||..--. ..-+.+++++....++.-....-+.|.+...|-++ +
T Consensus 191 ~~V~eGRDigT--vVfPdA~~KifL~As~e~RA~RR~~e~~--~~~~~~~i~~~i~~RD~~D~~R~~~pL~~a~dAi~iD 266 (863)
T PRK12269 191 RVVCEGRDLTT--VVFVDADLKCYLDASIEARVARRWAQGT--SRLSKQELEQRMRARDAHDRARTVGGLRCAPDALYVD 266 (863)
T ss_pred CEEEECCCCcc--EECCCCCEEEEEECCHHHHHHHHHHhhh--ccCCHHHHHHHHHHhhhhhccCccCCCccCCCeEEEE
Confidence 48888843321 2345679999999999999999975432 23688889888877777776677889888888654 4
Q ss_pred CCCCchhhHHHHHHHHHHHhc
Q 027528 114 RGGDNHVAIDLIVQHIRTKLG 134 (222)
Q Consensus 114 ~~~~~~~~~~~~~~~i~~~l~ 134 (222)
++ .+.++.+++.|.+...
T Consensus 267 ts---~l~ieevv~~i~~~~~ 284 (863)
T PRK12269 267 TS---CLTIEEVCERIAREAH 284 (863)
T ss_pred CC---CCCHHHHHHHHHHHHH
Confidence 33 2445555555555443
No 82
>PF13238 AAA_18: AAA domain; PDB: 3IIK_A 3IIJ_A 3IIL_A 1RKB_A 3IIM_A 2AXP_A 3KB2_A 1KHT_A 1NKS_A 3H86_C ....
Probab=91.65 E-value=0.15 Score=37.94 Aligned_cols=43 Identities=28% Similarity=0.484 Sum_probs=30.6
Q ss_pred CCCcEEEEeccccCCChhhhccCCeE-EEEECCHHHHHHHHHhhcc
Q 027528 31 NPSDVILLEGILVFHDSRVRELMNMK-IFVDTDADVRLARRIRRDT 75 (222)
Q Consensus 31 ~~~~vvIvEGi~~l~~~~l~~~~D~~-Ifvd~d~d~rl~Rri~RD~ 75 (222)
.....+|++|.+.... .....+.. ||++||.+++..|...|..
T Consensus 71 ~~~~~~iid~~~~~~~--~~~~~~~~~i~L~~~~e~~~~R~~~R~~ 114 (129)
T PF13238_consen 71 NKGRNIIIDGILSNLE--LERLFDIKFIFLDCSPEELRKRLKKRGR 114 (129)
T ss_dssp TTTSCEEEEESSEEEC--ETTEEEESSEEEE--HHHHHHHHHCTTT
T ss_pred ccCCcEEEecccchhc--ccccceeeEEEEECCHHHHHHHHHhCCC
Confidence 4568889999998653 22333333 9999999999999999864
No 83
>PRK08154 anaerobic benzoate catabolism transcriptional regulator; Reviewed
Probab=91.54 E-value=1.1 Score=39.64 Aligned_cols=91 Identities=12% Similarity=0.239 Sum_probs=53.5
Q ss_pred CcEEEEeccccCCChhhhc---cCCeEEEEECCHHHHHHHHHhhcccccC----C-CHHHHHHHHHhccccchhhhcccc
Q 027528 33 SDVILLEGILVFHDSRVRE---LMNMKIFVDTDADVRLARRIRRDTVEKG----R-DIATVLDQYSKFVKPAFDDFILPT 104 (222)
Q Consensus 33 ~~vvIvEGi~~l~~~~l~~---~~D~~Ifvd~d~d~rl~Rri~RD~~~rg----~-~~~~~~~~~~~~~~p~~~~~i~p~ 104 (222)
..+||..|-....++.... -..+.||+++|.+++..|...|+. .|. . ..+.+.+.|.. ..|.|.
T Consensus 204 ~~~VI~~Ggg~v~~~~~~~~l~~~~~~V~L~a~~e~~~~Rl~~r~~-~rp~~~~~~~~e~i~~~~~~-R~~~y~------ 275 (309)
T PRK08154 204 EEMVLATGGGIVSEPATFDLLLSHCYTVWLKASPEEHMARVRAQGD-LRPMADNREAMEDLRRILAS-REPLYA------ 275 (309)
T ss_pred CCEEEECCCchhCCHHHHHHHHhCCEEEEEECCHHHHHHHHhcCCC-CCCCCCCCChHHHHHHHHHH-HHHHHH------
Confidence 3577777776554432111 124799999999999999887753 111 1 23455555544 455553
Q ss_pred CCCccEEEcCCCCc-hhhHHHHHHHHHHHh
Q 027528 105 KKYADIIIPRGGDN-HVAIDLIVQHIRTKL 133 (222)
Q Consensus 105 ~~~ADlvi~~~~~~-~~~~~~~~~~i~~~l 133 (222)
+||++|+++..+ +-..+.+...+...|
T Consensus 276 --~ad~~I~t~~~s~ee~~~~I~~~l~~~~ 303 (309)
T PRK08154 276 --RADAVVDTSGLTVAQSLARLRELVRPAL 303 (309)
T ss_pred --hCCEEEECCCCCHHHHHHHHHHHHHHHh
Confidence 399999866433 233445555554444
No 84
>PRK05541 adenylylsulfate kinase; Provisional
Probab=91.32 E-value=0.26 Score=39.47 Aligned_cols=91 Identities=13% Similarity=0.229 Sum_probs=46.9
Q ss_pred CCcEEEEeccccCC--Chhhhcc--CCeEEEEECCHHHHHHHHHhhcccccCCCHHHHHHHHHhccccchhhhccccCCC
Q 027528 32 PSDVILLEGILVFH--DSRVREL--MNMKIFVDTDADVRLARRIRRDTVEKGRDIATVLDQYSKFVKPAFDDFILPTKKY 107 (222)
Q Consensus 32 ~~~vvIvEGi~~l~--~~~l~~~--~D~~Ifvd~d~d~rl~Rri~RD~~~rg~~~~~~~~~~~~~~~p~~~~~i~p~~~~ 107 (222)
...+||+.|..... .+..+.. -...||+++|.++.+.|.. |... ++...+++.+.+. ...|.|. ..
T Consensus 77 ~g~~VI~~~~~~~~~~~~~~~~~~~~~~~v~l~~~~e~~~~R~~-~~l~-~~~~~~~~~~~~~-~~~~~~~-------~~ 146 (176)
T PRK05541 77 QGMIVIVTTISMFDEIYAYNRKHLPNYFEVYLKCDMEELIRRDQ-KGLY-TKALKGEIKNVVG-VDIPFDE-------PK 146 (176)
T ss_pred CCCEEEEEeCCcHHHHHHHHHhhcCCeEEEEEeCCHHHHHHhch-hhHH-HHHHcCccccccc-CCCcccC-------CC
Confidence 44688889887541 1111221 1378999999998888843 2111 1111222222232 2344442 23
Q ss_pred ccEEEcCCCC-c-hhhHHHHHHHHHHH
Q 027528 108 ADIIIPRGGD-N-HVAIDLIVQHIRTK 132 (222)
Q Consensus 108 ADlvi~~~~~-~-~~~~~~~~~~i~~~ 132 (222)
||++|+++.. + ...++.+++.+.+.
T Consensus 147 Ad~vI~~~~~~~~~~~v~~i~~~l~~~ 173 (176)
T PRK05541 147 ADLVIDNSCRTSLDEKVDLILNKLKLR 173 (176)
T ss_pred CCEEEeCCCCCCHHHHHHHHHHHHHHh
Confidence 8999997631 2 23344455554443
No 85
>KOG2878 consensus Predicted kinase [General function prediction only]
Probab=91.29 E-value=0.56 Score=39.63 Aligned_cols=95 Identities=19% Similarity=0.376 Sum_probs=59.2
Q ss_pred CCceeecccccccC----ccC-CCCeeEeCCCcEEEEeccccCCChh---------------------hh-------ccC
Q 027528 7 GQAVDIPNYDFKSY----KNN-VFPARRVNPSDVILLEGILVFHDSR---------------------VR-------ELM 53 (222)
Q Consensus 7 g~~v~~P~YD~~~~----~r~-~~~~~~v~~~~vvIvEGi~~l~~~~---------------------l~-------~~~ 53 (222)
|..+.+|.||-+.- +|. .+++.+++|.+++|+||-++-..|- +. ..+
T Consensus 121 ~~~v~vP~YdKS~f~G~GDR~d~sqw~k~~P~~~~ifEGWmlGF~Pl~~~~v~a~d~l~Gdl~~VN~kL~~Y~d~~~k~I 200 (282)
T KOG2878|consen 121 GLKVKVPRYDKSAFSGRGDRADSSQWPKVEPLSVIIFEGWMLGFKPLPADVVKAVDPLQGDLEVVNKKLEAYYDAWDKYI 200 (282)
T ss_pred cceEeccccchhhccCCCCCCccccCcccCceeEEEEecccccccccchhheeccCcccccHHHHhhHHHHHHHHHHHhh
Confidence 55799999997653 332 3467888899999999988755441 00 112
Q ss_pred CeEEEEECC-HHHHHHHHHhhcc-----cccCCCHHHHHHHHHhccccchhhhcc
Q 027528 54 NMKIFVDTD-ADVRLARRIRRDT-----VEKGRDIATVLDQYSKFVKPAFDDFIL 102 (222)
Q Consensus 54 D~~Ifvd~d-~d~rl~Rri~RD~-----~~rg~~~~~~~~~~~~~~~p~~~~~i~ 102 (222)
|-.|-+.++ ..--..||++-.. ...|.+-|++.+ |.++.+|+|..|.-
T Consensus 201 dslvv~~~q~inyVYrWRLQqEhal~~~~~kGMsDEeV~~-FV~rYmP~Yk~YL~ 254 (282)
T KOG2878|consen 201 DSLVVIKIQDINYVYRWRLQQEHALRQDGQKGMSDEEVND-FVSRYMPAYKAYLP 254 (282)
T ss_pred hhEEEEEecCccHhhhhhHHHHHHHHHhhccCCCHHHHHH-HHHhhhhHHHhhhh
Confidence 323444443 2333444543221 246899999977 45568999977653
No 86
>COG4240 Predicted kinase [General function prediction only]
Probab=90.88 E-value=0.22 Score=42.84 Aligned_cols=106 Identities=15% Similarity=0.269 Sum_probs=61.7
Q ss_pred cccCC-Cceeeccccc----ccCccCC-CCeeEeCCCcEEEEeccccCCChh---h-----h------------------
Q 027528 3 KLRHG-QAVDIPNYDF----KSYKNNV-FPARRVNPSDVILLEGILVFHDSR---V-----R------------------ 50 (222)
Q Consensus 3 ~Lk~g-~~v~~P~YD~----~~~~r~~-~~~~~v~~~~vvIvEGi~~l~~~~---l-----~------------------ 50 (222)
.+.+| .+|.+|.||- ..++|.. .++++ .+.+|+|+||-|+-..|. + +
T Consensus 128 ai~~g~~~V~lPrfDKS~f~gagDR~p~~q~ik-~~vdivIlEGWfvGfrPidp~ll~~p~n~l~~~ed~a~~~dvN~kL 206 (300)
T COG4240 128 AIARGGPTVPLPRFDKSAFAGAGDRAPQTQWIK-FEVDIVILEGWFVGFRPIDPELLAAPVNALEAAEDGAWRADVNDKL 206 (300)
T ss_pred HHhcCCCCcccccccchhccCCCCCCCccccee-cceeEEEEeeeeeecccCCHHHhCCCCccchhhccccHHHHHHhhh
Confidence 45555 4689999999 5556632 22333 349999999988744331 1 0
Q ss_pred ----cc---CCeEEEEECCH-HHHHHHHHhhccc-----ccCCCHHHHHHHHHhccccchhhhccccCCCccE
Q 027528 51 ----EL---MNMKIFVDTDA-DVRLARRIRRDTV-----EKGRDIATVLDQYSKFVKPAFDDFILPTKKYADI 110 (222)
Q Consensus 51 ----~~---~D~~Ifvd~d~-d~rl~Rri~RD~~-----~rg~~~~~~~~~~~~~~~p~~~~~i~p~~~~ADl 110 (222)
++ +|-.|-++++. ..-+.||.+-..+ ..|.+-+++.. +.++.+|.|+.|+.+..+.+.+
T Consensus 207 a~Y~pL~~rIdsLillta~din~vy~WRlQqEhkliAr~~kgmsdeqv~e-fvn~ymrsl~lylq~ls~~~al 278 (300)
T COG4240 207 APYRPLFDRIDSLILLTAPDINTVYAWRLQQEHKLIARLAKGMSDEQVSE-FVNAYMRSLELYLQRLSEWIAL 278 (300)
T ss_pred hhhHHHHHHhhheeEecccchHHHHHHHHHHHHHHHHHHhccCcHHHHHH-HHHHHHHHHHHHHHHHHHHHHc
Confidence 11 22234444443 4446666543322 24677776654 5556788888888886555443
No 87
>PF01202 SKI: Shikimate kinase; InterPro: IPR000623 Shikimate kinase (2.7.1.71 from EC) catalyses the fifth step in the biosynthesis of aromatic amino acids from chorismate (the so-called shikimate pathway) []. The enzyme catalyses the following reaction: ATP + shikimate = ADP + shikimate-3-phosphate The protein is found in bacteria (gene aroK or aroL), plants and fungi (where it is part of a multifunctional enzyme that catalyses five consecutive steps in this pathway). In 1994, the 3D structure of shikimate kinase was predicted to be very close to that of adenylate kinase, suggesting a functional similarity as well as an evolutionary relationship []. This prediction has since been confirmed experimentally. The protein is reported to possess an alpha/beta fold, consisting of a central sheet of five parallel beta-strands flanked by alpha-helices. Such a topology is very similar to that of adenylate kinase [].; GO: 0004765 shikimate kinase activity, 0005524 ATP binding; PDB: 3VAA_C 1KO8_B 1KO4_B 1KO1_A 1KOF_A 1KNQ_A 1KO5_A 1KAG_A 2PT5_D 1SHK_A ....
Probab=90.82 E-value=1.6 Score=34.42 Aligned_cols=88 Identities=19% Similarity=0.288 Sum_probs=51.4
Q ss_pred cEEEEeccccCCChhhhcc---CCeEEEEECCHHHHHHHHHhhcccccCCCHH---HHHHHHHhccccchhhhccccCCC
Q 027528 34 DVILLEGILVFHDSRVREL---MNMKIFVDTDADVRLARRIRRDTVEKGRDIA---TVLDQYSKFVKPAFDDFILPTKKY 107 (222)
Q Consensus 34 ~vvIvEGi~~l~~~~l~~~---~D~~Ifvd~d~d~rl~Rri~RD~~~rg~~~~---~~~~~~~~~~~p~~~~~i~p~~~~ 107 (222)
+.||.-|-.....++.+++ ....||++.|.+....|...++.+-.-.... .....+. ...|.|.. .
T Consensus 63 ~~VIa~GGG~~~~~~~~~~L~~~g~vI~L~~~~~~l~~Rl~~~~~Rp~l~~~~~~~~~~~~~~-~R~~~Y~~-------~ 134 (158)
T PF01202_consen 63 NCVIACGGGIVLKEENRELLKENGLVIYLDADPEELAERLRARDNRPLLKGKMEHEEILELLF-EREPLYEQ-------A 134 (158)
T ss_dssp SEEEEE-TTGGGSHHHHHHHHHHSEEEEEE--HHHHHHHHHHHCTSGGTCSHHHHHHHHHHHH-HHHHHHHH-------H
T ss_pred cEEEeCCCCCcCcHHHHHHHHhCCEEEEEeCCHHHHHHHHhCCCCCCCCCCCChHHHHHHHHH-HHHHHHHh-------c
Confidence 7788887666666665554 4589999999999988887776411111222 2333333 34666654 4
Q ss_pred ccEEEcCCCCc-hhhHHHHHHHH
Q 027528 108 ADIIIPRGGDN-HVAIDLIVQHI 129 (222)
Q Consensus 108 ADlvi~~~~~~-~~~~~~~~~~i 129 (222)
||++++.+... .-.++.+++.|
T Consensus 135 a~~~v~~~~~~~~~i~~~i~~~l 157 (158)
T PF01202_consen 135 ADIVVDTDGSPPEEIAEEILEFL 157 (158)
T ss_dssp SSEEEETSSCHHHHHHHHHHHHH
T ss_pred CeEEEeCCCCCHHHHHHHHHHHh
Confidence 89999866554 33334444444
No 88
>PRK00698 tmk thymidylate kinase; Validated
Probab=90.17 E-value=1.3 Score=35.87 Aligned_cols=23 Identities=26% Similarity=0.437 Sum_probs=20.7
Q ss_pred cCCeEEEEECCHHHHHHHHHhhc
Q 027528 52 LMNMKIFVDTDADVRLARRIRRD 74 (222)
Q Consensus 52 ~~D~~Ifvd~d~d~rl~Rri~RD 74 (222)
..|+.||+++|+++++.|...|.
T Consensus 127 ~pd~~i~l~~~~~~~~~Rl~~R~ 149 (205)
T PRK00698 127 RPDLTLYLDVPPEVGLARIRARG 149 (205)
T ss_pred CCCEEEEEeCCHHHHHHHHHhcC
Confidence 47899999999999999988885
No 89
>PF01712 dNK: Deoxynucleoside kinase; InterPro: IPR002624 This family consists of various deoxynucleoside kinases including cytidine (2.7.1.74 from EC), guanosine (2.7.1.113 from EC), adenosine (2.7.1.76 from EC) and thymidine kinase (2.7.1.21 from EC, which also phosphorylates deoxyuridine and deoxycytosine. These enzymes catalyse the production of deoxynucleotide 5'-monophosphate from a deoxynucleoside, using ATP and yielding ADP in the process.; GO: 0005524 ATP binding, 0016773 phosphotransferase activity, alcohol group as acceptor, 0006139 nucleobase-containing compound metabolic process; PDB: 2JAS_B 2JAT_B 2JAQ_A 2VP4_D 1ZMX_F 1ZM7_C 1OE0_B 2VP9_C 2VPP_B 2VP6_G ....
Probab=90.10 E-value=0.25 Score=38.78 Aligned_cols=58 Identities=17% Similarity=0.347 Sum_probs=34.4
Q ss_pred CCeEEEEECCHHHHHHHHHhhcccccCCCHHH-HHHHHHhccc-cchhhhccccCCCccEEEcCC
Q 027528 53 MNMKIFVDTDADVRLARRIRRDTVEKGRDIAT-VLDQYSKFVK-PAFDDFILPTKKYADIIIPRG 115 (222)
Q Consensus 53 ~D~~Ifvd~d~d~rl~Rri~RD~~~rg~~~~~-~~~~~~~~~~-p~~~~~i~p~~~~ADlvi~~~ 115 (222)
-|+.||+++|+++++.|-.+|. |+.|. +-..|.+... -.|+.|........-++|+..
T Consensus 68 pdl~IYL~~~~e~~~~RI~kRg-----R~~E~~i~~~Yl~~L~~~~y~~~~~~~~~~~vl~id~~ 127 (146)
T PF01712_consen 68 PDLIIYLDASPETCLERIKKRG-----REEEKNIPLEYLERLHEEAYEDWLKKYDSTPVLVIDAD 127 (146)
T ss_dssp -SEEEEEE--HHHHHHHHHHCT-----TGGGTTS-HHHHHHHHHHHHCCHHSCCTTTTGCEEEEC
T ss_pred CCeEEEEeCCHHHHHHHHHHhC-----CchhcCCCHHHHHHHhHHHHHHHHHhCCCCceEEEECC
Confidence 6899999999999999988874 44442 1122333333 456677765554445566643
No 90
>COG0703 AroK Shikimate kinase [Amino acid transport and metabolism]
Probab=89.94 E-value=2.3 Score=34.75 Aligned_cols=89 Identities=17% Similarity=0.292 Sum_probs=54.7
Q ss_pred cEEEEeccccCCChhhhccCC---eEEEEECCHHHHHHHHHhhccc---ccCCCHHHHHHHHHhccccchhhhccccCCC
Q 027528 34 DVILLEGILVFHDSRVRELMN---MKIFVDTDADVRLARRIRRDTV---EKGRDIATVLDQYSKFVKPAFDDFILPTKKY 107 (222)
Q Consensus 34 ~vvIvEGi~~l~~~~l~~~~D---~~Ifvd~d~d~rl~Rri~RD~~---~rg~~~~~~~~~~~~~~~p~~~~~i~p~~~~ 107 (222)
+.||-=|=-+...++.+.++. ..||+++|.++-++|.- +|-. -...++.+.+........|-|++ .
T Consensus 73 ~~ViaTGGG~v~~~enr~~l~~~g~vv~L~~~~e~l~~Rl~-~~~~RPll~~~~~~~~l~~L~~~R~~~Y~e-------~ 144 (172)
T COG0703 73 NAVIATGGGAVLSEENRNLLKKRGIVVYLDAPFETLYERLQ-RDRKRPLLQTEDPREELEELLEERQPLYRE-------V 144 (172)
T ss_pred CeEEECCCccccCHHHHHHHHhCCeEEEEeCCHHHHHHHhc-cccCCCcccCCChHHHHHHHHHHHHHHHHH-------h
Confidence 466666666666676666544 89999999999877765 3321 12455534333333345777754 3
Q ss_pred ccEEEcCCCCchhhHHHHHHHHH
Q 027528 108 ADIIIPRGGDNHVAIDLIVQHIR 130 (222)
Q Consensus 108 ADlvi~~~~~~~~~~~~~~~~i~ 130 (222)
||++++....+....+.+++.+.
T Consensus 145 a~~~~~~~~~~~~v~~~i~~~l~ 167 (172)
T COG0703 145 ADFIIDTDDRSEEVVEEILEALE 167 (172)
T ss_pred CcEEecCCCCcHHHHHHHHHHHH
Confidence 99999876555444444444443
No 91
>cd01672 TMPK Thymidine monophosphate kinase (TMPK), also known as thymidylate kinase, catalyzes the phosphorylation of thymidine monophosphate (TMP) to thymidine diphosphate (TDP) utilizing ATP as its preferred phophoryl donor. TMPK represents the rate-limiting step in either de novo or salvage biosynthesis of thymidine triphosphate (TTP).
Probab=89.68 E-value=1.2 Score=35.55 Aligned_cols=73 Identities=16% Similarity=0.241 Sum_probs=40.5
Q ss_pred cCCeEEEEECCHHHHHHHHHhhcccccCCCHHHHHHHHHhccccchhhhccccCCCcc-EEEcCCCCchhhHHHHHHHHH
Q 027528 52 LMNMKIFVDTDADVRLARRIRRDTVEKGRDIATVLDQYSKFVKPAFDDFILPTKKYAD-IIIPRGGDNHVAIDLIVQHIR 130 (222)
Q Consensus 52 ~~D~~Ifvd~d~d~rl~Rri~RD~~~rg~~~~~~~~~~~~~~~p~~~~~i~p~~~~AD-lvi~~~~~~~~~~~~~~~~i~ 130 (222)
..|+.||+++|+++.+.|...|+.... ..+....|.......|..+.... .++ ++|+++.. ++.+.+.|.
T Consensus 125 ~~~~~i~l~~~~~~~~~R~~~R~~~~~---~~~~~~~~~~~~~~~y~~~~~~~--~~~~~~id~~~~----~e~i~~~i~ 195 (200)
T cd01672 125 KPDLTILLDIDPEVGLARIEARGRDDR---DEQEGLEFHERVREGYLELAAQE--PERIIVIDASQP----LEEVLAEIL 195 (200)
T ss_pred CCCEEEEEeCCHHHHHHHHHhcCCcch---hhhhhHHHHHHHHHHHHHHHHhC--CCeEEEEeCCCC----HHHHHHHHH
Confidence 368999999999999999988864211 11222334444455555544322 233 55554322 344445554
Q ss_pred HHh
Q 027528 131 TKL 133 (222)
Q Consensus 131 ~~l 133 (222)
+.+
T Consensus 196 ~~i 198 (200)
T cd01672 196 KAI 198 (200)
T ss_pred HHH
Confidence 433
No 92
>PLN02200 adenylate kinase family protein
Probab=88.76 E-value=1.3 Score=37.68 Aligned_cols=42 Identities=19% Similarity=0.377 Sum_probs=30.0
Q ss_pred cEEEEeccccCCC-----hh-hhccCCeEEEEECCHHHHHHHHHhhcc
Q 027528 34 DVILLEGILVFHD-----SR-VRELMNMKIFVDTDADVRLARRIRRDT 75 (222)
Q Consensus 34 ~vvIvEGi~~l~~-----~~-l~~~~D~~Ifvd~d~d~rl~Rri~RD~ 75 (222)
.-+|++|..--.. .. +....|+.||+++|.++.+.|...|..
T Consensus 121 ~~~ILDG~Prt~~q~~~l~~~~~~~pd~vi~Ld~~~e~~~~Rl~~R~~ 168 (234)
T PLN02200 121 NKFLIDGFPRTEENRIAFERIIGAEPNVVLFFDCPEEEMVKRVLNRNQ 168 (234)
T ss_pred CeEEecCCcccHHHHHHHHHHhccCCCEEEEEECCHHHHHHHHHcCcC
Confidence 4589999643211 11 122478999999999999999998864
No 93
>cd00464 SK Shikimate kinase (SK) is the fifth enzyme in the shikimate pathway, a seven-step biosynthetic pathway which converts erythrose-4-phosphate to chorismic acid, found in bacteria, fungi and plants. Chorismic acid is a important intermediate in the synthesis of aromatic compounds, such as aromatic amino acids, p-aminobenzoic acid, folate and ubiquinone. Shikimate kinase catalyses the phosphorylation of the 3-hydroxyl group of shikimic acid using ATP.
Probab=88.64 E-value=2.2 Score=32.80 Aligned_cols=76 Identities=14% Similarity=0.193 Sum_probs=44.2
Q ss_pred CCcEEEEeccccCCChh---hhccCCeEEEEECCHHHHHHHHHhhcccccC--CCHHHHHHHHHhccccchhhhccccCC
Q 027528 32 PSDVILLEGILVFHDSR---VRELMNMKIFVDTDADVRLARRIRRDTVEKG--RDIATVLDQYSKFVKPAFDDFILPTKK 106 (222)
Q Consensus 32 ~~~vvIvEGi~~l~~~~---l~~~~D~~Ifvd~d~d~rl~Rri~RD~~~rg--~~~~~~~~~~~~~~~p~~~~~i~p~~~ 106 (222)
..++||.-|.....++. ........||+++|.+++..|...|+..-.+ .+++.+.+.|.. ..+.| .+
T Consensus 68 ~~~~vi~~g~~~i~~~~~~~~~~~~~~~i~l~~~~e~~~~R~~~r~~r~~~~~~~~~~~~~~~~~-r~~~Y-------~~ 139 (154)
T cd00464 68 KENAVIATGGGAVLREENRRLLLENGIVVWLDASPEELLERLARDKTRPLLQDEDPERLRELLEE-REPLY-------RE 139 (154)
T ss_pred cCCcEEECCCCccCcHHHHHHHHcCCeEEEEeCCHHHHHHHhccCCCCCCCCCCCHHHHHHHHHH-HHHHH-------HH
Confidence 34666666643333332 1223568999999999999888777522111 122344454544 24444 33
Q ss_pred CccEEEcCC
Q 027528 107 YADIIIPRG 115 (222)
Q Consensus 107 ~ADlvi~~~ 115 (222)
.||++|+..
T Consensus 140 ~ad~~i~~~ 148 (154)
T cd00464 140 VADLTIDTD 148 (154)
T ss_pred hCcEEEECC
Confidence 499999754
No 94
>PRK13947 shikimate kinase; Provisional
Probab=88.54 E-value=4.6 Score=31.76 Aligned_cols=67 Identities=19% Similarity=0.293 Sum_probs=37.5
Q ss_pred CCeEEEEECCHHHHHHHHHhhccc---ccCCCHHHHHHHHHhccccchhhhccccCCCccEEEcCCCCchhhHHHHHHHH
Q 027528 53 MNMKIFVDTDADVRLARRIRRDTV---EKGRDIATVLDQYSKFVKPAFDDFILPTKKYADIIIPRGGDNHVAIDLIVQHI 129 (222)
Q Consensus 53 ~D~~Ifvd~d~d~rl~Rri~RD~~---~rg~~~~~~~~~~~~~~~p~~~~~i~p~~~~ADlvi~~~~~~~~~~~~~~~~i 129 (222)
.++.||+++|.+....|.-.|... ..+...+.+.+.|.. ..+.| +.||++|+.+.. .++.+.+.|
T Consensus 94 ~~~vv~L~~~~~~l~~Rl~~r~~rp~~~~~~~~~~i~~~~~~-r~~~y--------~~ad~~Idt~~~---~~~~i~~~I 161 (171)
T PRK13947 94 NGVVICLKARPEVILRRVGKKKSRPLLMVGDPEERIKELLKE-REPFY--------DFADYTIDTGDM---TIDEVAEEI 161 (171)
T ss_pred CCEEEEEECCHHHHHHHhcCCCCCCCCCCCChHHHHHHHHHH-HHHHH--------HhcCEEEECCCC---CHHHHHHHH
Confidence 467999999999998887655321 111122334344443 23333 238999985433 233444555
Q ss_pred HH
Q 027528 130 RT 131 (222)
Q Consensus 130 ~~ 131 (222)
.+
T Consensus 162 ~~ 163 (171)
T PRK13947 162 IK 163 (171)
T ss_pred HH
Confidence 44
No 95
>TIGR03263 guanyl_kin guanylate kinase. Members of this family are the enzyme guanylate kinase, also called GMP kinase. This enzyme transfers a phosphate from ATP to GMP, yielding ADP and GDP.
Probab=87.85 E-value=2 Score=34.19 Aligned_cols=87 Identities=21% Similarity=0.315 Sum_probs=43.7
Q ss_pred CCcEEEEeccccCCChhhhccC-C-eEEEEECCHHHHHHHHHhhcccccCCCHHHHHHHHHhccccchhhhccccCCCcc
Q 027528 32 PSDVILLEGILVFHDSRVRELM-N-MKIFVDTDADVRLARRIRRDTVEKGRDIATVLDQYSKFVKPAFDDFILPTKKYAD 109 (222)
Q Consensus 32 ~~~vvIvEGi~~l~~~~l~~~~-D-~~Ifvd~d~d~rl~Rri~RD~~~rg~~~~~~~~~~~~~~~p~~~~~i~p~~~~AD 109 (222)
...++|+++.+.-. ..+.+.+ + +.||+.++.+..+.+|+.+ ||...++.+.+......+.. + ....+|
T Consensus 90 ~g~~vi~d~~~~~~-~~~~~~~~~~~~i~~~~~~~e~~~~Rl~~----r~~~~~~~i~~rl~~~~~~~----~-~~~~~d 159 (180)
T TIGR03263 90 AGKDVLLEIDVQGA-RQVKKKFPDAVSIFILPPSLEELERRLRK----RGTDSEEVIERRLAKAKKEI----A-HADEFD 159 (180)
T ss_pred CCCeEEEECCHHHH-HHHHHhCCCcEEEEEECCCHHHHHHHHHH----cCCCCHHHHHHHHHHHHHHH----h-ccccCc
Confidence 34566765544322 2333333 3 5788866655454444432 34444444444444333322 1 245699
Q ss_pred EEEcCCCCchhhHHHHHHHHHHHh
Q 027528 110 IIIPRGGDNHVAIDLIVQHIRTKL 133 (222)
Q Consensus 110 lvi~~~~~~~~~~~~~~~~i~~~l 133 (222)
.+|.|+ + ++...+.+++.+
T Consensus 160 ~~i~n~-~----~~~~~~~l~~~~ 178 (180)
T TIGR03263 160 YVIVND-D----LEKAVEELKSII 178 (180)
T ss_pred EEEECC-C----HHHHHHHHHHHH
Confidence 999874 3 334445555444
No 96
>PRK13974 thymidylate kinase; Provisional
Probab=87.48 E-value=2.3 Score=35.28 Aligned_cols=45 Identities=16% Similarity=0.249 Sum_probs=32.9
Q ss_pred CCeEEEEECCHHHHHHHHHhhcccccCCCHHHHHHHHHhccccchhhhc
Q 027528 53 MNMKIFVDTDADVRLARRIRRDTVEKGRDIATVLDQYSKFVKPAFDDFI 101 (222)
Q Consensus 53 ~D~~Ifvd~d~d~rl~Rri~RD~~~rg~~~~~~~~~~~~~~~p~~~~~i 101 (222)
.|+.||+|+|+++.+.|...|.- ...+.-...|...+.|.|..|-
T Consensus 135 pd~~i~ld~~~~~~~~R~~~R~d----D~~e~~~~~y~~~v~~~y~~y~ 179 (212)
T PRK13974 135 PDLTFFLEISVEESIRRRKNRKP----DRIEAEGIEFLERVAEGFALIA 179 (212)
T ss_pred CCEEEEEeCCHHHHHHHHHhccc----CchhhhhHHHHHHHHHHHHHHH
Confidence 68999999999999999777631 1233334456777888887664
No 97
>COG0125 Tmk Thymidylate kinase [Nucleotide transport and metabolism]
Probab=87.13 E-value=2.3 Score=35.68 Aligned_cols=74 Identities=15% Similarity=0.293 Sum_probs=43.8
Q ss_pred cCCeEEEEECCHHHHHHHHHhhccc-ccCCCHHHHHHHHHhccccchhhhccccCCCccEEEcCCCCchhhHHHHHHHHH
Q 027528 52 LMNMKIFVDTDADVRLARRIRRDTV-EKGRDIATVLDQYSKFVKPAFDDFILPTKKYADIIIPRGGDNHVAIDLIVQHIR 130 (222)
Q Consensus 52 ~~D~~Ifvd~d~d~rl~Rri~RD~~-~rg~~~~~~~~~~~~~~~p~~~~~i~p~~~~ADlvi~~~~~~~~~~~~~~~~i~ 130 (222)
.-|+++|+|+|+++.++|.-.|... .+ .+.++ ..+...++-.|........+ .=++|+.+.. ++.+.+.|.
T Consensus 127 ~PD~ti~Ldv~~e~al~R~~~r~~~~~r-~E~~~--~~f~~kvr~~Y~~la~~~~~-r~~vIda~~~----~e~v~~~i~ 198 (208)
T COG0125 127 KPDLTLYLDVPPEVALERIRKRGELRDR-FEKED--DEFLEKVREGYLELAAKFPE-RIIVIDASRP----LEEVHEEIL 198 (208)
T ss_pred CCCEEEEEeCCHHHHHHHHHhcCCccch-hhhHH--HHHHHHHHHHHHHHHhhCCC-eEEEEECCCC----HHHHHHHHH
Confidence 4599999999999999999998653 11 11111 12444466677665554443 2345664433 444444444
Q ss_pred HHh
Q 027528 131 TKL 133 (222)
Q Consensus 131 ~~l 133 (222)
..+
T Consensus 199 ~~l 201 (208)
T COG0125 199 KIL 201 (208)
T ss_pred HHH
Confidence 444
No 98
>TIGR01360 aden_kin_iso1 adenylate kinase, isozyme 1 subfamily. Members of this family are adenylate kinase, EC 2.7.4.3. This clade is found only in eukaryotes and includes human adenylate kinase isozyme 1 (myokinase). Within the adenylate kinase superfamily, this set appears specifically closely related to a subfamily of eukaryotic UMP-CMP kinases (TIGR01359), rather than to the large clade of bacterial, archaeal, and eukaryotic adenylate kinase family members in TIGR01351.
Probab=86.88 E-value=3.4 Score=32.85 Aligned_cols=45 Identities=16% Similarity=0.248 Sum_probs=31.4
Q ss_pred CCCcEEEEeccccCCC--hhhh---ccCCeEEEEECCHHHHHHHHHhhcc
Q 027528 31 NPSDVILLEGILVFHD--SRVR---ELMNMKIFVDTDADVRLARRIRRDT 75 (222)
Q Consensus 31 ~~~~vvIvEGi~~l~~--~~l~---~~~D~~Ifvd~d~d~rl~Rri~RD~ 75 (222)
....-+|++|..--.. ..+. ...|+.||+++|.++.+.|...|..
T Consensus 80 ~~~~~~i~dg~~~~~~q~~~~~~~~~~~~~vi~l~~~~~~~~~Rl~~R~~ 129 (188)
T TIGR01360 80 GTSKGFLIDGYPREVKQGEEFERRIGPPTLVLYFDCSEDTMVKRLLKRAE 129 (188)
T ss_pred CcCCeEEEeCCCCCHHHHHHHHHcCCCCCEEEEEECCHHHHHHHHHcccc
Confidence 3456789999753210 1111 2468999999999999999988864
No 99
>PRK14527 adenylate kinase; Provisional
Probab=86.69 E-value=2.6 Score=34.13 Aligned_cols=42 Identities=7% Similarity=0.163 Sum_probs=29.2
Q ss_pred cEEEEeccccCCCh--hhh-------ccCCeEEEEECCHHHHHHHHHhhcc
Q 027528 34 DVILLEGILVFHDS--RVR-------ELMNMKIFVDTDADVRLARRIRRDT 75 (222)
Q Consensus 34 ~vvIvEGi~~l~~~--~l~-------~~~D~~Ifvd~d~d~rl~Rri~RD~ 75 (222)
.-+|++|..--... .+. ...+..||+++|.++++.|...|-.
T Consensus 84 ~~~VlDGfpr~~~q~~~~~~~~~~~g~~~~~vi~l~~~~~~~~~Rl~~R~~ 134 (191)
T PRK14527 84 VRVIFDGFPRTLAQAEALDRLLEELGARLLAVVLLEVPDEELIRRIVERAR 134 (191)
T ss_pred CcEEEcCCCCCHHHHHHHHHHHHHcCCCCCEEEEEECCHHHHHHHHHcCcc
Confidence 34899995432111 111 2366789999999999999999964
No 100
>PRK13808 adenylate kinase; Provisional
Probab=86.45 E-value=4.9 Score=36.18 Aligned_cols=40 Identities=15% Similarity=0.181 Sum_probs=29.0
Q ss_pred CcEEEEeccccCCChhhh----------ccCCeEEEEECCHHHHHHHHHhh
Q 027528 33 SDVILLEGILVFHDSRVR----------ELMNMKIFVDTDADVRLARRIRR 73 (222)
Q Consensus 33 ~~vvIvEGi~~l~~~~l~----------~~~D~~Ifvd~d~d~rl~Rri~R 73 (222)
..-+|++|..--. ++.. -..|+.||+|+|+++.+.|...|
T Consensus 78 ~~G~ILDGFPRt~-~QA~~L~~ll~~~gi~PDlVI~LDVp~evll~Rl~~R 127 (333)
T PRK13808 78 ANGFILDGFPRTV-PQAEALDALLKDKQLKLDAVVELRVNEGALLARVETR 127 (333)
T ss_pred cCCEEEeCCCCCH-HHHHHHHHHHHhcCCCcCeEEEEECCHHHHHHHHHcC
Confidence 3568899955322 2211 14799999999999999999887
No 101
>PRK13975 thymidylate kinase; Provisional
Probab=85.73 E-value=3.9 Score=32.94 Aligned_cols=23 Identities=26% Similarity=0.371 Sum_probs=20.3
Q ss_pred cCCeEEEEECCHHHHHHHHHhhc
Q 027528 52 LMNMKIFVDTDADVRLARRIRRD 74 (222)
Q Consensus 52 ~~D~~Ifvd~d~d~rl~Rri~RD 74 (222)
..|+.||+++|.++.+.|...|+
T Consensus 113 ~pd~vi~L~~~~e~~~~Rl~~r~ 135 (196)
T PRK13975 113 KPDLVFLLDVDIEEALKRMETRD 135 (196)
T ss_pred CCCEEEEEcCCHHHHHHHHhccC
Confidence 47899999999999999988775
No 102
>PRK14530 adenylate kinase; Provisional
Probab=85.31 E-value=5 Score=33.19 Aligned_cols=41 Identities=15% Similarity=0.293 Sum_probs=29.0
Q ss_pred CcEEEEeccccCCChh---hh--ccCCeEEEEECCHHHHHHHHHhhc
Q 027528 33 SDVILLEGILVFHDSR---VR--ELMNMKIFVDTDADVRLARRIRRD 74 (222)
Q Consensus 33 ~~vvIvEGi~~l~~~~---l~--~~~D~~Ifvd~d~d~rl~Rri~RD 74 (222)
.+-+|++| |.-...+ +. ...|+.||+++|.++.+.|...|.
T Consensus 82 ~~~~IldG-~pr~~~q~~~l~~~~~~d~vI~Ld~~~~~l~~Rl~~R~ 127 (215)
T PRK14530 82 ADGFVLDG-YPRNLEQAEYLESITDLDVVLYLDVSEEELVDRLTGRR 127 (215)
T ss_pred CCCEEEcC-CCCCHHHHHHHHHhcCCCEEEEEeCCHHHHHHHHhCCC
Confidence 45688899 4322122 21 237899999999999999988874
No 103
>PRK13973 thymidylate kinase; Provisional
Probab=84.81 E-value=3.7 Score=34.11 Aligned_cols=23 Identities=26% Similarity=0.528 Sum_probs=20.8
Q ss_pred cCCeEEEEECCHHHHHHHHHhhc
Q 027528 52 LMNMKIFVDTDADVRLARRIRRD 74 (222)
Q Consensus 52 ~~D~~Ifvd~d~d~rl~Rri~RD 74 (222)
.-|+.+|+|+|+++.+.|...|.
T Consensus 128 ~PD~vi~Ldv~~e~~~~Rl~~R~ 150 (213)
T PRK13973 128 MPDLTLILDIPAEVGLERAAKRR 150 (213)
T ss_pred CCCEEEEEeCCHHHHHHHHHhcc
Confidence 36999999999999999988885
No 104
>PF02223 Thymidylate_kin: Thymidylate kinase; InterPro: IPR018094 Thymidylate kinase (2.7.4.9 from EC; dTMP kinase) catalyzes the phosphorylation of thymidine 5'-monophosphate (dTMP) to form thymidine 5'-diphosphate (dTDP) in the presence of ATP and magnesium: ATP + thymidine 5'-phosphate = ADP + thymidine 5'-diphosphate Thymidylate kinase is an ubiquitous enzyme of about 25 Kd and is important in the dTTP synthesis pathway for DNA synthesis. The function of dTMP kinase in eukaryotes comes from the study of a cell cycle mutant, cdc8, in Saccharomyces cerevisiae. Structural and functional analyses suggest that the cDNA codes for authentic human dTMP kinase. The mRNA levels and enzyme activities corresponded to cell cycle progression and cell growth stages[]. ; GO: 0004798 thymidylate kinase activity, 0005524 ATP binding, 0006233 dTDP biosynthetic process; PDB: 2PLR_B 1NMX_A 1NN0_A 2XX3_A 1NN3_A 1E9F_A 1E2Q_A 1E2D_A 1E9A_A 1E99_A ....
Probab=84.53 E-value=2.8 Score=33.63 Aligned_cols=48 Identities=23% Similarity=0.387 Sum_probs=31.0
Q ss_pred cCCeEEEEECCHHHHHHHHHhhcccccCCCHHHHHHHHHhccccchhhhcc
Q 027528 52 LMNMKIFVDTDADVRLARRIRRDTVEKGRDIATVLDQYSKFVKPAFDDFIL 102 (222)
Q Consensus 52 ~~D~~Ifvd~d~d~rl~Rri~RD~~~rg~~~~~~~~~~~~~~~p~~~~~i~ 102 (222)
.-|+.+|+|+|+++++.|.-.|+. ......+-.+ +...+.-.|.+...
T Consensus 118 ~PDl~~~Ldv~pe~~~~R~~~r~~--~~~~~~~~~~-~~~~~~~~y~~l~~ 165 (186)
T PF02223_consen 118 KPDLTFFLDVDPEEALKRIAKRGE--KDDEEEEDLE-YLRRVREAYLELAK 165 (186)
T ss_dssp E-SEEEEEECCHHHHHHHHHHTSS--TTTTTTHHHH-HHHHHHHHHHHHHH
T ss_pred CCCEEEEEecCHHHHHHHHHcCCc--cchHHHHHHH-HHHHHHHHHHHHHc
Confidence 349999999999999999999986 1222333333 33334556655553
No 105
>cd01673 dNK Deoxyribonucleoside kinase (dNK) catalyzes the phosphorylation of deoxyribonucleosides to yield corresponding monophosphates (dNMPs). This family consists of various deoxynucleoside kinases including deoxyribo- cytidine (EC 2.7.1.74), guanosine (EC 2.7.1.113), adenosine (EC 2.7.1.76), and thymidine (EC 2.7.1.21) kinases. They are key enzymes in the salvage of deoxyribonucleosides originating from extra- or intracellular breakdown of DNA.
Probab=84.14 E-value=1.4 Score=35.64 Aligned_cols=57 Identities=23% Similarity=0.408 Sum_probs=37.2
Q ss_pred cCCeEEEEECCHHHHHHHHHhhcccccCCCHHH-HHHHHHhccccchhhhccc-cCCCccEEEc
Q 027528 52 LMNMKIFVDTDADVRLARRIRRDTVEKGRDIAT-VLDQYSKFVKPAFDDFILP-TKKYADIIIP 113 (222)
Q Consensus 52 ~~D~~Ifvd~d~d~rl~Rri~RD~~~rg~~~~~-~~~~~~~~~~p~~~~~i~p-~~~~ADlvi~ 113 (222)
..|+.||+++++++++.|...| |++.+. .-..|.......|..+... ....+.+++-
T Consensus 124 ~pd~~i~l~~~~~~~~~Ri~~R-----~r~~e~~~~~~~~~~l~~~y~~~~~~~~~~~~~~~vi 182 (193)
T cd01673 124 PPDLVIYLDASPETCLKRIKKR-----GRPEEQGIPLDYLEDLHEAYEKWFLPQMYEKAPVLII 182 (193)
T ss_pred CCCEEEEEeCCHHHHHHHHHhc-----CcHhhhcCCHHHHHHHHHHHHHHHhhccCCCCCEEEE
Confidence 5789999999999998886665 333332 1123445567778887765 2344566543
No 106
>PRK07933 thymidylate kinase; Validated
Probab=83.89 E-value=2.8 Score=35.00 Aligned_cols=78 Identities=12% Similarity=0.184 Sum_probs=42.3
Q ss_pred cCCeEEEEECCHHHHHHHHHhhcccccC--CCHHHHHHHHHhccccchhhhccccCCCccEEEcCCCCchhhHHHHHHHH
Q 027528 52 LMNMKIFVDTDADVRLARRIRRDTVEKG--RDIATVLDQYSKFVKPAFDDFILPTKKYADIIIPRGGDNHVAIDLIVQHI 129 (222)
Q Consensus 52 ~~D~~Ifvd~d~d~rl~Rri~RD~~~rg--~~~~~~~~~~~~~~~p~~~~~i~p~~~~ADlvi~~~~~~~~~~~~~~~~i 129 (222)
.-|+.||+|+|+++.+.|.-.|.-...| .+.-+--..|...+.-.|..+.......--++|+.. -.++.|.+.|
T Consensus 132 ~PDl~i~Ldv~~e~a~~Ri~~R~~~~~~~~~d~~E~~~~f~~~v~~~Y~~~~~~~~~~~~~~ida~----~~~e~v~~~i 207 (213)
T PRK07933 132 VPDLQVLLDVPVELAAERARRRAAQDADRARDAYERDDGLQQRTGAVYAELAAQGWGGPWLVVDPD----VDPAALAARL 207 (213)
T ss_pred CCCEEEEecCCHHHHHHHHHhhccccCCcccccccccHHHHHHHHHHHHHHHHhcCCCCeEEeCCC----CCHHHHHHHH
Confidence 3599999999999999998777421100 111111123445566677666543212223456532 2344555555
Q ss_pred HHHh
Q 027528 130 RTKL 133 (222)
Q Consensus 130 ~~~l 133 (222)
.+.|
T Consensus 208 ~~~~ 211 (213)
T PRK07933 208 AAAL 211 (213)
T ss_pred HHHh
Confidence 5443
No 107
>PRK13976 thymidylate kinase; Provisional
Probab=82.24 E-value=3.4 Score=34.50 Aligned_cols=52 Identities=15% Similarity=0.351 Sum_probs=32.8
Q ss_pred CCeEEEEECCHHHHHHHHHhhcccccCCCHHHHHHHHHhccccchhhhccccCCCccEE
Q 027528 53 MNMKIFVDTDADVRLARRIRRDTVEKGRDIATVLDQYSKFVKPAFDDFILPTKKYADII 111 (222)
Q Consensus 53 ~D~~Ifvd~d~d~rl~Rri~RD~~~rg~~~~~~~~~~~~~~~p~~~~~i~p~~~~ADlv 111 (222)
-|+.||+|+|+++.+.|.- +| +. +..-..|...+...|.++.........++
T Consensus 125 PDl~i~Ldv~~e~a~~Ri~-~~----~~--e~~~~~~l~~v~~~Y~~l~~~~~~~~~~i 176 (209)
T PRK13976 125 PDITFVLDIDIELSLSRAD-KN----GY--EFMDLEFYDKVRKGFREIVIKNPHRCHVI 176 (209)
T ss_pred CCEEEEEeCCHHHHHHHhc-cc----ch--hcccHHHHHHHHHHHHHHHHhCCCCeEEE
Confidence 5999999999999999973 22 21 11122355567777877765443334443
No 108
>PRK02496 adk adenylate kinase; Provisional
Probab=81.54 E-value=2.7 Score=33.74 Aligned_cols=42 Identities=17% Similarity=0.192 Sum_probs=29.2
Q ss_pred CcEEEEeccccCCC-----hh-h---hccCCeEEEEECCHHHHHHHHHhhc
Q 027528 33 SDVILLEGILVFHD-----SR-V---RELMNMKIFVDTDADVRLARRIRRD 74 (222)
Q Consensus 33 ~~vvIvEGi~~l~~-----~~-l---~~~~D~~Ifvd~d~d~rl~Rri~RD 74 (222)
..-+|++|.---.. .+ + ....|+.||+++|.++...|...|.
T Consensus 79 ~~g~vldGfPr~~~q~~~l~~~~~~~~~~~~~vi~l~~~~~~~~~Rl~~R~ 129 (184)
T PRK02496 79 ANGWILDGFPRKVTQAAFLDELLQEIGQSGERVVNLDVPDDVVVERLLARG 129 (184)
T ss_pred cCCEEEeCCCCCHHHHHHHHHHHHhcCCCCCEEEEEeCCHHHHHHHHhcCC
Confidence 34689999843111 11 1 1246899999999999999988873
No 109
>PRK12338 hypothetical protein; Provisional
Probab=81.44 E-value=3.9 Score=36.62 Aligned_cols=97 Identities=18% Similarity=0.287 Sum_probs=57.6
Q ss_pred CCCcEEEEeccccCCChhhhc--------cCCeEEEEECCHHHHHHHHHhhcccccCCCHHHHHHHHHhccccchhhhcc
Q 027528 31 NPSDVILLEGILVFHDSRVRE--------LMNMKIFVDTDADVRLARRIRRDTVEKGRDIATVLDQYSKFVKPAFDDFIL 102 (222)
Q Consensus 31 ~~~~vvIvEGi~~l~~~~l~~--------~~D~~Ifvd~d~d~rl~Rri~RD~~~rg~~~~~~~~~~~~~~~p~~~~~i~ 102 (222)
....-||+||++.+ |.+.. ..-+-|+. .|.+.-+.|...|.. ..++.. ..+..|.. .+-.. +|..
T Consensus 103 ~~g~svIiEGvhl~--P~~i~~~~~~~~~~v~~~vl~-~dee~h~~Rf~~R~~-~~~r~~-~~l~~f~~-Ir~Iq-~~l~ 175 (319)
T PRK12338 103 TDSDDIVIEGVHLV--PGLIDIEQFEENASIHFFILS-ADEEVHKERFVKRAM-EIKRGG-KQLEYFRE-NRIIH-DHLV 175 (319)
T ss_pred cCCCeEEEEecccc--HHHHhhhhhcccCceEEEEEE-CCHHHHHHHHHHhhh-ccCCch-hhhhChHH-HHHHH-HHHH
Confidence 35568999999885 43322 12233343 788899999999875 334433 33333433 23233 3344
Q ss_pred ccCCCccEEEcCCCCchhhHHHHHHHHHHHhc
Q 027528 103 PTKKYADIIIPRGGDNHVAIDLIVQHIRTKLG 134 (222)
Q Consensus 103 p~~~~ADlvi~~~~~~~~~~~~~~~~i~~~l~ 134 (222)
......++.+-.+.+-+-.++.+++.|.+...
T Consensus 176 ~~A~e~~VpvI~N~did~Tv~~ile~I~e~s~ 207 (319)
T PRK12338 176 EQAREHNVPVIKNDDIDCTVKKMLSYIREVCV 207 (319)
T ss_pred HhHhhCCCceeCCCcHHHHHHHHHHHHHhheE
Confidence 44666677754454556677788888877754
No 110
>TIGR03574 selen_PSTK L-seryl-tRNA(Sec) kinase, archaeal. Members of this protein are L-seryl-tRNA(Sec) kinase. This enzyme is part of a two-step pathway in Eukaryota and Archaea for performing selenocysteine biosynthesis by changing serine misacylated on selenocysteine-tRNA to selenocysteine. This enzyme performs the first step, phosphorylation of the OH group of the serine side chain. This family represents archaeal proteins with this activity.
Probab=81.24 E-value=24 Score=29.75 Aligned_cols=131 Identities=15% Similarity=0.214 Sum_probs=68.6
Q ss_pred CCcEEEEeccccCCC--hhhh------ccCCeEEEEECCHHHHHHHHHhhcccccCCCHHHHHHHHHhccccchhhhccc
Q 027528 32 PSDVILLEGILVFHD--SRVR------ELMNMKIFVDTDADVRLARRIRRDTVEKGRDIATVLDQYSKFVKPAFDDFILP 103 (222)
Q Consensus 32 ~~~vvIvEGi~~l~~--~~l~------~~~D~~Ifvd~d~d~rl~Rri~RD~~~rg~~~~~~~~~~~~~~~p~~~~~i~p 103 (222)
....||++|...... .++. +.-...||+++|.+.++.|...|.. ..+.+.+.+.+..+..|... |
T Consensus 67 ~~~~VI~D~~~~~~~~r~~l~~~ak~~~~~~~~I~l~~p~e~~~~Rn~~R~~---~~~~~~i~~l~~r~e~p~~~-~--- 139 (249)
T TIGR03574 67 NKYSVIVDDTNYYNSMRRDLINIAKEYNKNYIIIYLKAPLDTLLRRNIERGE---KIPNEVIKDMYEKFDEPGTK-Y--- 139 (249)
T ss_pred CCCeEEEeccchHHHHHHHHHHHHHhCCCCEEEEEecCCHHHHHHHHHhCCC---CCCHHHHHHHHHhhCCCCCC-C---
Confidence 345788888654321 1221 1223688999999999999887752 22333333434333333311 0
Q ss_pred cCCCccEEEcCCCCchhhHHHHHHHHHHHhccCCccccCCceeeeccchhhhhhhhhhhcCCCCchhhhhhHHHHHHHHH
Q 027528 104 TKKYADIIIPRGGDNHVAIDLIVQHIRTKLGQHDLCKIYPNLYVIHSTFQIRGMHTLIRDSQTTKHDFVFYSDRLIRLVV 183 (222)
Q Consensus 104 ~~~~ADlvi~~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~v~vl~~~p~~~~~lt~lRd~~t~~~~Fr~~~~~i~~lL~ 183 (222)
....++++|+...+ ..++.+.+.|...+.. .+ . | ..-|+ ++.++...|.+-+|..++-.+
T Consensus 140 ~wd~~~~~vd~~~~--~~~~ei~~~i~~~~~~-~~---~---------~---~~~~~--~~~~~~~~~l~~ld~~~~~~i 199 (249)
T TIGR03574 140 SWDLPDLTIDTTKK--IDYNEILEEILEISEN-KL---K---------I---EKPKK--PKRRTDENILNKIDKRTRQIV 199 (249)
T ss_pred CccCceEEecCCCC--CCHHHHHHHHHHHhhc-cC---C---------h---hhhhh--hcccccccHHHHHHHHHHHHH
Confidence 12458999975432 2334555555544421 00 0 0 11111 233455567777777777666
Q ss_pred HHHhCC
Q 027528 184 EHGLGH 189 (222)
Q Consensus 184 ~ea~~~ 189 (222)
-+.++.
T Consensus 200 ~~~~~~ 205 (249)
T TIGR03574 200 GELIKT 205 (249)
T ss_pred HHHHHh
Confidence 666654
No 111
>PRK14528 adenylate kinase; Provisional
Probab=77.77 E-value=5.8 Score=32.22 Aligned_cols=44 Identities=16% Similarity=0.256 Sum_probs=31.0
Q ss_pred CcEEEEeccccCCC------hhhh---ccCCeEEEEECCHHHHHHHHHhhccc
Q 027528 33 SDVILLEGILVFHD------SRVR---ELMNMKIFVDTDADVRLARRIRRDTV 76 (222)
Q Consensus 33 ~~vvIvEGi~~l~~------~~l~---~~~D~~Ifvd~d~d~rl~Rri~RD~~ 76 (222)
.+-+|++|..--.. ..+. ...|+.||+++|.++.+.|...|...
T Consensus 79 ~~g~viDG~Pr~~~qa~~l~~~~~~~~~~~d~vI~Ld~~~~~~~~Rl~~R~~~ 131 (186)
T PRK14528 79 KNGFLLDGFPRTVEQADALDALLKNEGKSIDKAINLEVPDGELLKRLLGRAEI 131 (186)
T ss_pred cCcEEEeCCCCCHHHHHHHHHHHHhcCCCCCEEEEEECCHHHHHHHHhcCccc
Confidence 45689999532110 1111 24899999999999999999999653
No 112
>PF08433 KTI12: Chromatin associated protein KTI12 ; InterPro: IPR013641 This is a family of chromatin associated proteins which interact with the Elongator complex, a component of the elongating form of RNA polymerase II []. The Elongator complex has histone acetyltransferase activity. ; PDB: 3ADB_B 3ADC_B 3A4M_B 3A4N_B 3AM1_A 3A4L_B 3ADD_A.
Probab=76.12 E-value=20 Score=31.16 Aligned_cols=135 Identities=16% Similarity=0.183 Sum_probs=61.5
Q ss_pred eCCCcEEEEeccccCCC---h--hh---hccCCeEEEEECCHHHHHHHHHhhcccccCCCHHHHHHHHHhccccchhhhc
Q 027528 30 VNPSDVILLEGILVFHD---S--RV---RELMNMKIFVDTDADVRLARRIRRDTVEKGRDIATVLDQYSKFVKPAFDDFI 101 (222)
Q Consensus 30 v~~~~vvIvEGi~~l~~---~--~l---~~~~D~~Ifvd~d~d~rl~Rri~RD~~~rg~~~~~~~~~~~~~~~p~~~~~i 101 (222)
+....+||+++++=+.. + .+ ...--..||++++.+.++.|-..|...+ .++.+-+.+.+.++-.|+-..
T Consensus 68 ls~~~iVI~Dd~nYiKg~RYelyclAr~~~~~~c~i~~~~~~e~~~~~N~~R~~~~-~~~~e~i~~m~~RfE~P~~~n-- 144 (270)
T PF08433_consen 68 LSKDTIVILDDNNYIKGMRYELYCLARAYGTTFCVIYCDCPLETCLQRNSKRPEPE-RYPEETIDDMIQRFEEPDPKN-- 144 (270)
T ss_dssp HTT-SEEEE-S---SHHHHHHHHHHHHHTT-EEEEEEEE--HHHHHHHHHHTT-S---S-HHHHHHHHHH---TTSS---
T ss_pred hccCeEEEEeCCchHHHHHHHHHHHHHHcCCCEEEEEECCCHHHHHHhhhccCCCC-CCCHHHHHHHHHHhcCCCCCC--
Confidence 35669999999984321 0 11 2233367999999999999999997532 355555555555544444210
Q ss_pred cccCCCccEEEcCCCCchhhHHHHHHHHHHHhccCCccccCCceeeeccchhhhhhhhhhhcCCCCchhhhhhHHHHHHH
Q 027528 102 LPTKKYADIIIPRGGDNHVAIDLIVQHIRTKLGQHDLCKIYPNLYVIHSTFQIRGMHTLIRDSQTTKHDFVFYSDRLIRL 181 (222)
Q Consensus 102 ~p~~~~ADlvi~~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~v~vl~~~p~~~~~lt~lRd~~t~~~~Fr~~~~~i~~l 181 (222)
-....-+.|++ .+.....+.|.+.|...-... . +.-|. ++......|..-+|.+++-
T Consensus 145 --rWD~plf~i~~-~~~~~~~~~I~~~l~~~~~~~------p------------n~~t~--~~~~~~~n~lh~lD~~tr~ 201 (270)
T PF08433_consen 145 --RWDSPLFTIDS-SDEELPLEEIWNALFENKPLP------P------------NQATQ--SKPLSSTNFLHELDKITRE 201 (270)
T ss_dssp --GGGS-SEEEE--TTS---HHHHHHHHHHHHTS--------------------SSSTT---------HHHHHHHHHHHH
T ss_pred --CccCCeEEEec-CCCCCCHHHHHHHHHhcCCCC------C------------Ccccc--CCCCCCCcHHHHHHHHHHH
Confidence 12334677774 344455566666662221110 0 00111 1223455788878887777
Q ss_pred HHHHHhCCC
Q 027528 182 VVEHGLGHL 190 (222)
Q Consensus 182 L~~ea~~~l 190 (222)
++-+.++..
T Consensus 202 iv~~il~~~ 210 (270)
T PF08433_consen 202 IVSEILKAQ 210 (270)
T ss_dssp HHHHHHH--
T ss_pred HHHHHHHhh
Confidence 777766643
No 113
>PRK03839 putative kinase; Provisional
Probab=75.19 E-value=26 Score=27.83 Aligned_cols=36 Identities=17% Similarity=0.227 Sum_probs=27.5
Q ss_pred cEEEEeccccCCChhhhccCCeEEEEECCHHHHHHHHHhhc
Q 027528 34 DVILLEGILVFHDSRVRELMNMKIFVDTDADVRLARRIRRD 74 (222)
Q Consensus 34 ~vvIvEGi~~l~~~~l~~~~D~~Ifvd~d~d~rl~Rri~RD 74 (222)
+-+|++|.+... . ..|+.||++++.++...|...|.
T Consensus 66 ~~vIidG~~~~l----~-~~~~vi~L~~~~~~~~~Rl~~R~ 101 (180)
T PRK03839 66 KNVVLDGHLSHL----L-PVDYVIVLRAHPKIIKERLKERG 101 (180)
T ss_pred CCEEEEeccccc----c-CCCEEEEEECCHHHHHHHHHHcC
Confidence 347889976532 1 36899999999999998877764
No 114
>KOG3079 consensus Uridylate kinase/adenylate kinase [Nucleotide transport and metabolism]
Probab=75.10 E-value=6.3 Score=32.67 Aligned_cols=25 Identities=20% Similarity=0.313 Sum_probs=23.0
Q ss_pred cCCeEEEEECCHHHHHHHHHhhccc
Q 027528 52 LMNMKIFVDTDADVRLARRIRRDTV 76 (222)
Q Consensus 52 ~~D~~Ifvd~d~d~rl~Rri~RD~~ 76 (222)
-.++.+|+||+.++++.|.+.|+..
T Consensus 112 ~~~fvl~fdc~ee~~l~Rll~R~q~ 136 (195)
T KOG3079|consen 112 DPDFVLFFDCPEETMLKRLLHRGQS 136 (195)
T ss_pred CCCEEEEEeCCHHHHHHHHHhhccc
Confidence 4689999999999999999999865
No 115
>PRK00300 gmk guanylate kinase; Provisional
Probab=72.68 E-value=19 Score=29.14 Aligned_cols=85 Identities=20% Similarity=0.215 Sum_probs=41.1
Q ss_pred cEEEEeccccCCChhhhccCC--eEEEEECCH-HHHHHHHHhhcccccCCCHHHHHHHHHhccccchhhhccccCCCccE
Q 027528 34 DVILLEGILVFHDSRVRELMN--MKIFVDTDA-DVRLARRIRRDTVEKGRDIATVLDQYSKFVKPAFDDFILPTKKYADI 110 (222)
Q Consensus 34 ~vvIvEGi~~l~~~~l~~~~D--~~Ifvd~d~-d~rl~Rri~RD~~~rg~~~~~~~~~~~~~~~p~~~~~i~p~~~~ADl 110 (222)
.++|+++...-. ..+.+.+. ..||+.++. +....|...| |.+.++.+.++....... .++ ...+|.
T Consensus 96 ~~vi~dl~~~g~-~~l~~~~~~~~~I~i~~~s~~~l~~Rl~~R-----~~~~~~~i~~rl~~~~~~----~~~-~~~~d~ 164 (205)
T PRK00300 96 KDVLLEIDWQGA-RQVKKKMPDAVSIFILPPSLEELERRLRGR-----GTDSEEVIARRLAKAREE----IAH-ASEYDY 164 (205)
T ss_pred CeEEEeCCHHHH-HHHHHhCCCcEEEEEECcCHHHHHHHHHhc-----CCCCHHHHHHHHHHHHHH----HHh-HHhCCE
Confidence 455654433221 34444443 678886654 4555555554 433344444444332222 222 356899
Q ss_pred EEcCCCCchhhHHHHHHHHHHHhc
Q 027528 111 IIPRGGDNHVAIDLIVQHIRTKLG 134 (222)
Q Consensus 111 vi~~~~~~~~~~~~~~~~i~~~l~ 134 (222)
+|.|+ + ++.+.+.+...+.
T Consensus 165 vi~n~-~----~e~~~~~l~~il~ 183 (205)
T PRK00300 165 VIVND-D----LDTALEELKAIIR 183 (205)
T ss_pred EEECC-C----HHHHHHHHHHHHH
Confidence 99744 2 3444445544443
No 116
>TIGR00041 DTMP_kinase thymidylate kinase. Function: phosphorylation of DTMP to form DTDP in both de novo and salvage pathways of DTTP synthesis. Catalytic activity: ATP + thymidine 5'-phosphate = ADP + thymidine 5'-diphosphate.
Probab=71.04 E-value=14 Score=29.53 Aligned_cols=23 Identities=30% Similarity=0.576 Sum_probs=20.9
Q ss_pred CCeEEEEECCHHHHHHHHHhhcc
Q 027528 53 MNMKIFVDTDADVRLARRIRRDT 75 (222)
Q Consensus 53 ~D~~Ifvd~d~d~rl~Rri~RD~ 75 (222)
.|+.||+++|.++.+.|...|+-
T Consensus 128 ~d~~i~l~~~~~~~~~R~~~r~~ 150 (195)
T TIGR00041 128 PDLTIYLDIDPEVALERLRKRGE 150 (195)
T ss_pred CCEEEEEeCCHHHHHHHHHhcCC
Confidence 79999999999999999888853
No 117
>PF13189 Cytidylate_kin2: Cytidylate kinase-like family; PDB: 3FDI_A.
Probab=70.56 E-value=6.7 Score=31.66 Aligned_cols=75 Identities=15% Similarity=0.222 Sum_probs=38.9
Q ss_pred EEEEeccccCCChhhhcc-CCeEEEEECCHHHHHHHHHhhcccccCCCHHHHHHHHHhc--cccchhhhccc----cCCC
Q 027528 35 VILLEGILVFHDSRVREL-MNMKIFVDTDADVRLARRIRRDTVEKGRDIATVLDQYSKF--VKPAFDDFILP----TKKY 107 (222)
Q Consensus 35 vvIvEGi~~l~~~~l~~~-~D~~Ifvd~d~d~rl~Rri~RD~~~rg~~~~~~~~~~~~~--~~p~~~~~i~p----~~~~ 107 (222)
=+|+.|--+.+ -+++. -.++|||.+|.+.|..|..+|. |.+.+++.+..... .+-.|-+++.. ....
T Consensus 97 ~~Vi~GR~a~~--il~~~~~~l~V~i~A~~~~Rv~ri~~~~----~~s~~~A~~~i~~~D~~R~~~~~~~~~~~~~d~~~ 170 (179)
T PF13189_consen 97 NCVIVGRCANY--ILRDIPNVLHVFIYAPLEFRVERIMERE----GISEEEAEKLIKKEDKRRRAYYKYYTGIDWGDPSN 170 (179)
T ss_dssp -EEEESTTHHH--HTTT-TTEEEEEEEE-HHHHHHHHHHHH----T--HHHHHHHHHHHHHHHHHHHHHH-SS-TTBGGG
T ss_pred CEEEEecCHhh--hhCCCCCeEEEEEECCHHHHHHHHHHHc----CCCHHHHHHHHHHHHHHHHHHHHHHhCCCCCCchh
Confidence 44555554422 22332 3499999999999999999985 55666555332211 12222222222 2455
Q ss_pred ccEEEcCC
Q 027528 108 ADIIIPRG 115 (222)
Q Consensus 108 ADlvi~~~ 115 (222)
-|++|+++
T Consensus 171 YDLvint~ 178 (179)
T PF13189_consen 171 YDLVINTS 178 (179)
T ss_dssp -SEEEEES
T ss_pred ceEEEeCc
Confidence 68888754
No 118
>TIGR00455 apsK adenylylsulfate kinase (apsK). Important residue (active site in E.coli) is residue 100 of the seed alignment.
Probab=69.89 E-value=41 Score=26.80 Aligned_cols=39 Identities=26% Similarity=0.402 Sum_probs=26.0
Q ss_pred CCCcEEEEeccccCCC--hhhhccCC----eEEEEECCHHHHHHH
Q 027528 31 NPSDVILLEGILVFHD--SRVRELMN----MKIFVDTDADVRLAR 69 (222)
Q Consensus 31 ~~~~vvIvEGi~~l~~--~~l~~~~D----~~Ifvd~d~d~rl~R 69 (222)
....+||+.+.+.... ..++.+.. ..||+++|.+++..|
T Consensus 88 ~~G~~VI~d~~~~~~~~r~~~~~~~~~~~~~~v~l~~~~e~~~~R 132 (184)
T TIGR00455 88 RNGIIVITSFISPYRADRQMVRELIEKGEFIEVFVDCPLEVCEQR 132 (184)
T ss_pred cCCCEEEEecCCCCHHHHHHHHHhCcCCCeEEEEEeCCHHHHHHh
Confidence 3468888998765421 12333332 569999999998777
No 119
>TIGR01359 UMP_CMP_kin_fam UMP-CMP kinase family. This subfamily of the adenylate kinase superfamily contains examples of UMP-CMP kinase, as well as others proteins with unknown specificity, some currently designated adenylate kinase. All known members are eukaryotic.
Probab=69.58 E-value=26 Score=27.66 Aligned_cols=43 Identities=19% Similarity=0.375 Sum_probs=31.0
Q ss_pred CcEEEEeccccCCC--h---hhh---ccCCeEEEEECCHHHHHHHHHhhcc
Q 027528 33 SDVILLEGILVFHD--S---RVR---ELMNMKIFVDTDADVRLARRIRRDT 75 (222)
Q Consensus 33 ~~vvIvEGi~~l~~--~---~l~---~~~D~~Ifvd~d~d~rl~Rri~RD~ 75 (222)
..-+|++|..--.. . ++. ...|+.||+++|.++.+.|...|..
T Consensus 76 ~~~~vlDg~p~~~~q~~~~~~~~~~~~~~d~~i~l~~~~~~~~~Rl~~R~~ 126 (183)
T TIGR01359 76 SKKFLIDGFPRNEENLEAWEKLMDNKVNFKFVLFFDCPEEVMIKRLLKRGQ 126 (183)
T ss_pred CCcEEEeCCCCCHHHHHHHHHHHhcCCCCCEEEEEECCHHHHHHHHhcCCc
Confidence 46789999754211 1 111 1467999999999999999999975
No 120
>PF03668 ATP_bind_2: P-loop ATPase protein family; InterPro: IPR005337 This entry represents UPF0042 nucleotide-binding proteins. This is a family of putative P-loop ATPases [], as they contain an ATP-binding site and display ATPase and GTPase activities.; GO: 0005524 ATP binding
Probab=67.09 E-value=17 Score=32.04 Aligned_cols=69 Identities=16% Similarity=0.350 Sum_probs=42.3
Q ss_pred eEEEEECCHHHHHHHHHhh---cccccCCCHHHHHHHHHhccccchhhhccccCCCccEEEcCCCCchhhHHHHHHHHHH
Q 027528 55 MKIFVDTDADVRLARRIRR---DTVEKGRDIATVLDQYSKFVKPAFDDFILPTKKYADIIIPRGGDNHVAIDLIVQHIRT 131 (222)
Q Consensus 55 ~~Ifvd~d~d~rl~Rri~R---D~~~rg~~~~~~~~~~~~~~~p~~~~~i~p~~~~ADlvi~~~~~~~~~~~~~~~~i~~ 131 (222)
-.+|+|++.++-+.|.-.- +=...+.+..+.++ .+.+..+|.++.||+||+.+.-+. .-+-+.|.+
T Consensus 84 ~ilFLdA~d~~LirRy~eTRR~HPL~~~~~~le~I~--------~Er~~L~~lr~~Ad~vIDTs~l~~---~~Lr~~i~~ 152 (284)
T PF03668_consen 84 RILFLDASDEVLIRRYSETRRRHPLSSDGSLLEAIE--------KERELLEPLRERADLVIDTSNLSV---HQLRERIRE 152 (284)
T ss_pred EEEEEECChHHHHHHHHhccCCCCCCCCCCcHHHHH--------HHHHHHHHHHHhCCEEEECCCCCH---HHHHHHHHH
Confidence 6789999999998887532 11111122222222 245678899999999999664443 344455555
Q ss_pred Hhc
Q 027528 132 KLG 134 (222)
Q Consensus 132 ~l~ 134 (222)
.+.
T Consensus 153 ~~~ 155 (284)
T PF03668_consen 153 RFG 155 (284)
T ss_pred Hhc
Confidence 553
No 121
>PRK14531 adenylate kinase; Provisional
Probab=66.92 E-value=14 Score=29.69 Aligned_cols=41 Identities=17% Similarity=0.285 Sum_probs=28.8
Q ss_pred cEEEEeccccCCCh--hh-------hccCCeEEEEECCHHHHHHHHHhhc
Q 027528 34 DVILLEGILVFHDS--RV-------RELMNMKIFVDTDADVRLARRIRRD 74 (222)
Q Consensus 34 ~vvIvEGi~~l~~~--~l-------~~~~D~~Ifvd~d~d~rl~Rri~RD 74 (222)
.-+|++|..--... .+ ....|..||+++|+++...|...|.
T Consensus 80 ~g~ilDGfpr~~~q~~~~~~~~~~~~~~~~~vi~l~~~~~~l~~Rl~~R~ 129 (183)
T PRK14531 80 GGWLLDGFPRTVAQAEALEPLLEELKQPIEAVVLLELDDAVLIERLLARG 129 (183)
T ss_pred CcEEEeCCCCCHHHHHHHHHHHHHcCCCCCeEEEEECCHHHHHHHhhcCC
Confidence 44677998764221 11 1236789999999999999988873
No 122
>PLN02199 shikimate kinase
Probab=66.91 E-value=40 Score=30.05 Aligned_cols=40 Identities=13% Similarity=0.079 Sum_probs=29.2
Q ss_pred CcEEEEeccccCCChhhhcc--CCeEEEEECCHHHHHHHHHh
Q 027528 33 SDVILLEGILVFHDSRVREL--MNMKIFVDTDADVRLARRIR 72 (222)
Q Consensus 33 ~~vvIvEGi~~l~~~~l~~~--~D~~Ifvd~d~d~rl~Rri~ 72 (222)
.++||--|--+...++.+.+ ....||+++|.+....|...
T Consensus 173 ~~~VIStGGG~V~~~~n~~~L~~G~vV~Ldas~E~l~~RL~~ 214 (303)
T PLN02199 173 YQVVVSTGGGAVIRPINWKYMHKGISIWLDVPLEALAHRIAA 214 (303)
T ss_pred CCEEEECCCcccCCHHHHHHHhCCeEEEEECCHHHHHHHHhh
Confidence 46788788777666654433 36899999999988777653
No 123
>COG3709 Uncharacterized component of phosphonate metabolism [Inorganic ion transport and metabolism]
Probab=66.64 E-value=72 Score=26.23 Aligned_cols=87 Identities=15% Similarity=0.257 Sum_probs=61.6
Q ss_pred CCCcEEEEeccccCCChhhhccCC--eEEEEECCHHHHHHHHHhhcccccCCCHHHHHHHHHhccccchhhhccccCCCc
Q 027528 31 NPSDVILLEGILVFHDSRVRELMN--MKIFVDTDADVRLARRIRRDTVEKGRDIATVLDQYSKFVKPAFDDFILPTKKYA 108 (222)
Q Consensus 31 ~~~~vvIvEGi~~l~~~~l~~~~D--~~Ifvd~d~d~rl~Rri~RD~~~rg~~~~~~~~~~~~~~~p~~~~~i~p~~~~A 108 (222)
....+||+-|.=+.. |+.+.-+. +.|.+.+++++--+|..+|- -.+.+++..+.... ..|. ..-.
T Consensus 92 ~~G~vvl~NgSRa~L-p~arrry~~Llvv~ita~p~VLaqRL~~RG----REs~eeI~aRL~R~-----a~~~---~~~~ 158 (192)
T COG3709 92 AAGDVVLVNGSRAVL-PQARRRYPQLLVVCITASPEVLAQRLAERG----RESREEILARLARA-----ARYT---AGPG 158 (192)
T ss_pred hCCCEEEEeccHhhh-HHHHHhhhcceeEEEecCHHHHHHHHHHhc----cCCHHHHHHHHHhh-----cccc---cCCC
Confidence 456899999999865 77766554 67888999999999988883 24788888876542 1222 2355
Q ss_pred cEE-EcCCCCchhhHHHHHHHHH
Q 027528 109 DII-IPRGGDNHVAIDLIVQHIR 130 (222)
Q Consensus 109 Dlv-i~~~~~~~~~~~~~~~~i~ 130 (222)
|+. |+|+++-+.+.+.++.++.
T Consensus 159 dv~~idNsG~l~~ag~~ll~~l~ 181 (192)
T COG3709 159 DVTTIDNSGELEDAGERLLALLH 181 (192)
T ss_pred CeEEEcCCCcHHHHHHHHHHHHH
Confidence 654 6777777777777777765
No 124
>PRK00279 adk adenylate kinase; Reviewed
Probab=66.64 E-value=48 Score=27.23 Aligned_cols=41 Identities=17% Similarity=0.182 Sum_probs=28.2
Q ss_pred cEEEEeccccCCC--hhh----h---ccCCeEEEEECCHHHHHHHHHhhc
Q 027528 34 DVILLEGILVFHD--SRV----R---ELMNMKIFVDTDADVRLARRIRRD 74 (222)
Q Consensus 34 ~vvIvEGi~~l~~--~~l----~---~~~D~~Ifvd~d~d~rl~Rri~RD 74 (222)
.-+|++|..--.. ..+ . -..+..||+++|.++.+.|...|-
T Consensus 79 ~g~VlDGfPr~~~qa~~l~~~l~~~~~~~~~vi~l~~~~~~~~~Rl~~R~ 128 (215)
T PRK00279 79 NGFLLDGFPRTIPQAEALDEMLKELGIKLDAVIEIDVPDEELVERLSGRR 128 (215)
T ss_pred CCEEEecCCCCHHHHHHHHHHHHHcCCCCCEEEEEECCHHHHHHHHhCCc
Confidence 3689999433211 112 1 135799999999999999998884
No 125
>PRK05416 glmZ(sRNA)-inactivating NTPase; Provisional
Probab=66.33 E-value=25 Score=30.97 Aligned_cols=68 Identities=15% Similarity=0.300 Sum_probs=36.8
Q ss_pred eEEEEECCHHHHHHHHHhh-ccc--ccCCCHHHHHHHHHhccccchhhhccccCCCccEEEcCCCCchhhHHHHHHHHHH
Q 027528 55 MKIFVDTDADVRLARRIRR-DTV--EKGRDIATVLDQYSKFVKPAFDDFILPTKKYADIIIPRGGDNHVAIDLIVQHIRT 131 (222)
Q Consensus 55 ~~Ifvd~d~d~rl~Rri~R-D~~--~rg~~~~~~~~~~~~~~~p~~~~~i~p~~~~ADlvi~~~~~~~~~~~~~~~~i~~ 131 (222)
..||++++.++.+.|.-.+ ... ..+.+..+.+.. .....+|..+.||++|+++..+ ++.+.+.|.+
T Consensus 88 ~iI~L~a~~e~L~~Rl~~~rr~RPLl~~~~l~e~I~~--------eR~~l~pl~~~ADivIDTs~ls---~~el~e~I~~ 156 (288)
T PRK05416 88 RVLFLDASDEVLIRRYSETRRRHPLSGDGSLLEGIEL--------ERELLAPLRERADLVIDTSELS---VHQLRERIRE 156 (288)
T ss_pred EEEEEECCHHHHHHHHhhcccCCCccCCccHHHHHHH--------HHhhhhhHHHhCCEEEECCCCC---HHHHHHHHHH
Confidence 5599999999999886432 110 012222222221 1223456667899999866433 2334444444
Q ss_pred Hh
Q 027528 132 KL 133 (222)
Q Consensus 132 ~l 133 (222)
.+
T Consensus 157 ~l 158 (288)
T PRK05416 157 RF 158 (288)
T ss_pred HH
Confidence 44
No 126
>PLN02924 thymidylate kinase
Probab=64.23 E-value=21 Score=29.94 Aligned_cols=43 Identities=14% Similarity=0.216 Sum_probs=26.8
Q ss_pred cCCeEEEEECCHHHHHHHHHhhcccccCCCHHHHHHHHHhccccchhhhc
Q 027528 52 LMNMKIFVDTDADVRLARRIRRDTVEKGRDIATVLDQYSKFVKPAFDDFI 101 (222)
Q Consensus 52 ~~D~~Ifvd~d~d~rl~Rri~RD~~~rg~~~~~~~~~~~~~~~p~~~~~i 101 (222)
.-|+.+|+|+|+++.+.|.-.++ ++ .+. ..|...+.-.|..+.
T Consensus 135 ~PDlvi~Ld~~~~~a~~R~~~~~--~~---~E~--~~~~~rv~~~Y~~la 177 (220)
T PLN02924 135 APDLVLYLDISPEEAAERGGYGG--ER---YEK--LEFQKKVAKRFQTLR 177 (220)
T ss_pred CCCEEEEEeCCHHHHHHHhccCc--cc---ccc--HHHHHHHHHHHHHHh
Confidence 36899999999999998842211 11 121 234445666776664
No 127
>cd00227 CPT Chloramphenicol (Cm) phosphotransferase (CPT). Cm-inactivating enzyme; modifies the primary (C-3) hydroxyl of the antibiotic. Related structurally to shikimate kinase II.
Probab=64.07 E-value=61 Score=25.61 Aligned_cols=42 Identities=12% Similarity=0.260 Sum_probs=28.2
Q ss_pred CCcEEEEeccccCCChhh----hccC--C-eEEEEECCHHHHHHHHHhhc
Q 027528 32 PSDVILLEGILVFHDSRV----RELM--N-MKIFVDTDADVRLARRIRRD 74 (222)
Q Consensus 32 ~~~vvIvEGi~~l~~~~l----~~~~--D-~~Ifvd~d~d~rl~Rri~RD 74 (222)
....||++..+... +.+ +.+. + .-||+++|.+++..|...|.
T Consensus 84 ~G~~VIvD~~~~~~-~~~r~~~~~~~~~~~~~v~l~~~~~~l~~R~~~R~ 132 (175)
T cd00227 84 AGANVIADDVFLGR-AALQDCWRSFVGLDVLWVGVRCPGEVAEGRETARG 132 (175)
T ss_pred CCCcEEEeeeccCC-HHHHHHHHHhcCCCEEEEEEECCHHHHHHHHHhcC
Confidence 44668888876622 222 2222 2 67889999999988888874
No 128
>PF00625 Guanylate_kin: Guanylate kinase; InterPro: IPR008144 Guanylate kinase (2.7.4.8 from EC) (GK) [] catalyzes the ATP-dependent phosphorylation of GMP into GDP. It is essential for recycling GMP and indirectly, cGMP. In prokaryotes (such as Escherichia coli), lower eukaryotes (such as yeast) and in vertebrates, GK is a highly conserved monomeric protein of about 200 amino acids. GK has been shown [, , ] to be structurally similar to protein A57R (or SalG2R) from various strains of Vaccinia virus. Proteins containing one or more copies of the DHR domain, an SH3 domain as well as a C-terminal GK-like domain, are collectively termed MAGUKs (membrane-associated guanylate kinase homologs) [], and include Drosophila lethal(1)discs large-1 tumor suppressor protein (gene dlg1); mammalian tight junction protein Zo-1; a family of mammalian synaptic proteins that seem to interact with the cytoplasmic tail of NMDA receptor subunits (SAP90/PSD-95, CHAPSYN-110/PSD-93, SAP97/DLG1 and SAP102); vertebrate 55kDa erythrocyte membrane protein (p55); Caenorhabditis elegans protein lin-2; rat protein CASK; and human proteins DLG2 and DLG3. There is an ATP-binding site (P-loop) in the N-terminal section of GK, which is not conserved in the GK-like domain of the above proteins. However these proteins retain the residues known, in GK, to be involved in the binding of GMP.; GO: 0005515 protein binding; PDB: 3UAT_A 3KFV_A 2ANC_F 2F3T_E 2ANB_A 2AN9_A 1S96_A 2F3R_B 3TR0_A 1LVG_A ....
Probab=63.96 E-value=29 Score=27.74 Aligned_cols=55 Identities=18% Similarity=0.320 Sum_probs=32.9
Q ss_pred ccCCeEEEEECCHHHHHHHHHhhcccccCCC-HHHHHHHHHhccccchhhhccccCCCccEEEcCC
Q 027528 51 ELMNMKIFVDTDADVRLARRIRRDTVEKGRD-IATVLDQYSKFVKPAFDDFILPTKKYADIIIPRG 115 (222)
Q Consensus 51 ~~~D~~Ifvd~d~d~rl~Rri~RD~~~rg~~-~~~~~~~~~~~~~p~~~~~i~p~~~~ADlvi~~~ 115 (222)
...-+.|||.++....+.+++.+ ||.+ .+.+..+.... +........ .|.+|.|+
T Consensus 112 ~~~~~~IfI~~~s~~~l~~~l~~----r~~~~~~~i~~r~~~~-----~~~~~~~~~-fd~vi~n~ 167 (183)
T PF00625_consen 112 GFNPIVIFIKPPSPEVLKRRLRR----RGDESEEEIEERLERA-----EKEFEHYNE-FDYVIVND 167 (183)
T ss_dssp TTTEEEEEEEESSHHHHHHHHHT----TTHCHHHHHHHHHHHH-----HHHHGGGGG-SSEEEECS
T ss_pred ccCceEEEEEccchHHHHHHHhc----cccccHHHHHHHHHHH-----HHHHhHhhc-CCEEEECc
Confidence 44558999999988888888765 3443 34444443331 121222222 89999864
No 129
>COG0194 Gmk Guanylate kinase [Nucleotide transport and metabolism]
Probab=63.30 E-value=27 Score=29.01 Aligned_cols=58 Identities=22% Similarity=0.371 Sum_probs=36.4
Q ss_pred hhhccC--CeEEEEECCHHHHHHHHHhhcccccCCCHHHHH-HHHHhccccchhhhccccCCCccEEEcCC
Q 027528 48 RVRELM--NMKIFVDTDADVRLARRIRRDTVEKGRDIATVL-DQYSKFVKPAFDDFILPTKKYADIIIPRG 115 (222)
Q Consensus 48 ~l~~~~--D~~Ifvd~d~d~rl~Rri~RD~~~rg~~~~~~~-~~~~~~~~p~~~~~i~p~~~~ADlvi~~~ 115 (222)
+++..+ -..||+.+|.-..|.||+.+ ||.+-++++ .+..+ ..-.. ......|.+|-|.
T Consensus 107 qvk~~~p~~v~IFi~pPs~eeL~~RL~~----Rgtds~e~I~~Rl~~-a~~Ei-----~~~~~fdyvivNd 167 (191)
T COG0194 107 QVKKKMPNAVSIFILPPSLEELERRLKG----RGTDSEEVIARRLEN-AKKEI-----SHADEFDYVIVND 167 (191)
T ss_pred HHHHhCCCeEEEEEcCCCHHHHHHHHHc----cCCCCHHHHHHHHHH-HHHHH-----HHHHhCCEEEECc
Confidence 555555 38999999999999999986 454444444 44443 22211 2334478887654
No 130
>PRK12337 2-phosphoglycerate kinase; Provisional
Probab=63.21 E-value=16 Score=34.51 Aligned_cols=99 Identities=16% Similarity=0.254 Sum_probs=54.2
Q ss_pred CCcEEEEeccccCCChhhhc----c--CCeEEEEEC-CHHHHHHHHHhhccccc-CCCHHHHHHHHHhccccchhhhccc
Q 027528 32 PSDVILLEGILVFHDSRVRE----L--MNMKIFVDT-DADVRLARRIRRDTVEK-GRDIATVLDQYSKFVKPAFDDFILP 103 (222)
Q Consensus 32 ~~~vvIvEGi~~l~~~~l~~----~--~D~~Ifvd~-d~d~rl~Rri~RD~~~r-g~~~~~~~~~~~~~~~p~~~~~i~p 103 (222)
...=||+||++.. |.+.+ . .-+-++|.+ |.+.-..|...|...-. ++..+..++.|.. .+- -++|+..
T Consensus 358 eG~SvIIEGVHl~--P~~i~~~~~~~~~~i~flv~isdeeeH~~Rf~~Ra~~~~~~r~~~ky~~~f~~-IR~-IQdyLv~ 433 (475)
T PRK12337 358 EGTSLVLEGVHLV--PGYLRHPYQAGALVVPMLVTLPDEALHRRRFELRDRETGASRPRERYLRHFEE-IRL-IQDHLLR 433 (475)
T ss_pred cCCeEEEECCCCC--HHHHHHHHhcCCceEEEEEEECCHHHHHHHHHHHhhhccCCCchhHHHHhHHH-HHH-HHHHHHH
Confidence 4567999999996 33322 1 112234444 55666777778865321 3344555555543 222 2345555
Q ss_pred cCCCccEEEcCCCCchhhHHHHHHHHHHHhc
Q 027528 104 TKKYADIIIPRGGDNHVAIDLIVQHIRTKLG 134 (222)
Q Consensus 104 ~~~~ADlvi~~~~~~~~~~~~~~~~i~~~l~ 134 (222)
..+..++-+-++.+-+-.++.+++.|.+.++
T Consensus 434 ~A~~~~ipvI~n~nid~tv~~~l~~i~~~~~ 464 (475)
T PRK12337 434 LARQEGVPVLPGEDLDESIDKALEVVLRRVM 464 (475)
T ss_pred HHHHcCCCeecCccHHHHHHHHHHHHHHHHH
Confidence 4455555444444445566777777766664
No 131
>COG1660 Predicted P-loop-containing kinase [General function prediction only]
Probab=62.53 E-value=29 Score=30.46 Aligned_cols=68 Identities=19% Similarity=0.318 Sum_probs=42.6
Q ss_pred eEEEEECCHHHHHHHHHh-h-ccc--ccCCCHHHHHHHHHhccccchhhhccccCCCccEEEcCCCCchhhHHHHHHHHH
Q 027528 55 MKIFVDTDADVRLARRIR-R-DTV--EKGRDIATVLDQYSKFVKPAFDDFILPTKKYADIIIPRGGDNHVAIDLIVQHIR 130 (222)
Q Consensus 55 ~~Ifvd~d~d~rl~Rri~-R-D~~--~rg~~~~~~~~~~~~~~~p~~~~~i~p~~~~ADlvi~~~~~~~~~~~~~~~~i~ 130 (222)
--+|+|++.++-+.|.-. | --- ..|. +.+. .-.+.++..|.+..||+||+.+.-+. .-+-+.|.
T Consensus 85 ~iLFLeA~~~~Lv~RY~etRR~HPL~~~~~-l~~~--------I~~ERelL~pLk~~A~~vIDTs~ls~---~~Lr~~i~ 152 (286)
T COG1660 85 RVLFLEADDETLVRRYSETRRSHPLSEDGL-LLEA--------IAKERELLAPLREIADLVIDTSELSV---HELRERIR 152 (286)
T ss_pred eEEEEECchhHHHHHHhhhhhcCCCCccCc-HHHH--------HHHHHHHHHHHHHHhhhEeecccCCH---HHHHHHHH
Confidence 457999999999888652 2 111 1122 2222 22356788999999999999664443 34445555
Q ss_pred HHhc
Q 027528 131 TKLG 134 (222)
Q Consensus 131 ~~l~ 134 (222)
..+.
T Consensus 153 ~~f~ 156 (286)
T COG1660 153 TRFL 156 (286)
T ss_pred HHHc
Confidence 5554
No 132
>smart00072 GuKc Guanylate kinase homologues. Active enzymes catalyze ATP-dependent phosphorylation of GMP to GDP. Structure resembles that of adenylate kinase. So-called membrane-associated guanylate kinase homologues (MAGUKs) do not possess guanylate kinase activities; instead at least some possess protein-binding functions.
Probab=61.99 E-value=48 Score=26.55 Aligned_cols=85 Identities=16% Similarity=0.173 Sum_probs=45.6
Q ss_pred CCcEEEEeccccCCChhhhcc-CC-eEEEEECCHHHHHHHHHhhcccccCC-CHHHHHHHHHhccccchhhhccccCCCc
Q 027528 32 PSDVILLEGILVFHDSRVREL-MN-MKIFVDTDADVRLARRIRRDTVEKGR-DIATVLDQYSKFVKPAFDDFILPTKKYA 108 (222)
Q Consensus 32 ~~~vvIvEGi~~l~~~~l~~~-~D-~~Ifvd~d~d~rl~Rri~RD~~~rg~-~~~~~~~~~~~~~~p~~~~~i~p~~~~A 108 (222)
...++|+++-.--. ..++.. .+ +.||+.++....+.+|+.. ||. +.+.+.++.... .. ........
T Consensus 92 ~~~~~ild~~~~~~-~~l~~~~~~~~vIfi~~~s~~~l~~rl~~----R~~~~~~~i~~rl~~a----~~--~~~~~~~f 160 (184)
T smart00072 92 QGKHCLLDIDPQGV-KQLRKAQLYPIVIFIAPPSSEELERRLRG----RGTETAERIQKRLAAA----QK--EAQEYHLF 160 (184)
T ss_pred cCCeEEEEECHHHH-HHHHHhCCCcEEEEEeCcCHHHHHHHHHh----cCCCCHHHHHHHHHHH----HH--HHhhhccC
Confidence 45778887764322 344432 33 8999997776656665542 343 455555554431 11 11123558
Q ss_pred cEEEcCCCCchhhHHHHHHH
Q 027528 109 DIIIPRGGDNHVAIDLIVQH 128 (222)
Q Consensus 109 Dlvi~~~~~~~~~~~~~~~~ 128 (222)
|.+|.|. +-+.+.+.+.+.
T Consensus 161 d~~I~n~-~l~~~~~~l~~~ 179 (184)
T smart00072 161 DYVIVND-DLEDAYEELKEI 179 (184)
T ss_pred CEEEECc-CHHHHHHHHHHH
Confidence 9999865 323343344333
No 133
>PRK13948 shikimate kinase; Provisional
Probab=60.47 E-value=60 Score=26.38 Aligned_cols=75 Identities=12% Similarity=0.162 Sum_probs=41.9
Q ss_pred CcEEEEeccccCCChhhhcc---CCeEEEEECCHHHHHHHHHhhccc---ccCCCHHHHHHHHHhccccchhhhccccCC
Q 027528 33 SDVILLEGILVFHDSRVREL---MNMKIFVDTDADVRLARRIRRDTV---EKGRDIATVLDQYSKFVKPAFDDFILPTKK 106 (222)
Q Consensus 33 ~~vvIvEGi~~l~~~~l~~~---~D~~Ifvd~d~d~rl~Rri~RD~~---~rg~~~~~~~~~~~~~~~p~~~~~i~p~~~ 106 (222)
.+.||.-|--++.+++-+.. ....||+++|.++...|. .++.. ..+...+.+.+.|.. ..|.| .
T Consensus 80 ~~~VIa~GgG~v~~~~n~~~l~~~g~vV~L~~~~e~l~~Rl-~~~~RPll~~~~~~~~l~~l~~~-R~~~Y--------~ 149 (182)
T PRK13948 80 DYAVISLGGGTFMHEENRRKLLSRGPVVVLWASPETIYERT-RPGDRPLLQVEDPLGRIRTLLNE-REPVY--------R 149 (182)
T ss_pred CCeEEECCCcEEcCHHHHHHHHcCCeEEEEECCHHHHHHHh-cCCCCCCCCCCChHHHHHHHHHH-HHHHH--------H
Confidence 46677765555444432221 368999999999988875 43211 111223444444554 34433 1
Q ss_pred CccEEEcCCCC
Q 027528 107 YADIIIPRGGD 117 (222)
Q Consensus 107 ~ADlvi~~~~~ 117 (222)
.||++|+....
T Consensus 150 ~a~~~i~t~~~ 160 (182)
T PRK13948 150 QATIHVSTDGR 160 (182)
T ss_pred hCCEEEECCCC
Confidence 28999985533
No 134
>PRK03846 adenylylsulfate kinase; Provisional
Probab=60.24 E-value=38 Score=27.48 Aligned_cols=21 Identities=43% Similarity=0.631 Sum_probs=16.3
Q ss_pred hhccC---Ce-EEEEECCHHHHHHH
Q 027528 49 VRELM---NM-KIFVDTDADVRLAR 69 (222)
Q Consensus 49 l~~~~---D~-~Ifvd~d~d~rl~R 69 (222)
++.++ ++ .||+++|.+++..|
T Consensus 114 ~r~~l~~~~~i~V~L~~~~e~~~~R 138 (198)
T PRK03846 114 VRERLGEGEFIEVFVDTPLAICEAR 138 (198)
T ss_pred HHHHcccCCEEEEEEcCCHHHHHhc
Confidence 44444 34 79999999999888
No 135
>TIGR01351 adk adenylate kinases. Adenylate kinase (EC 2.7.4.3) converts ATP + AMP to ADP + ADP, that is, uses ATP as a phosphate donor for AMP. Most members of this family are known or believed to be adenylate kinase. However, some members accept other nucleotide triphosphates as donors, may be unable to use ATP, and may fail to complement adenylate kinase mutants. An example of a nucleoside-triphosphate--adenylate kinase (EC 2.7.4.10) is a GTP:AMP phosphotransferase. This family is designated subfamily rather than equivalog for this reason.
Probab=60.04 E-value=76 Score=25.89 Aligned_cols=42 Identities=14% Similarity=0.176 Sum_probs=29.5
Q ss_pred CcEEEEeccccCCC--hhhh---c-cCCeEEEEECCHHHHHHHHHhhc
Q 027528 33 SDVILLEGILVFHD--SRVR---E-LMNMKIFVDTDADVRLARRIRRD 74 (222)
Q Consensus 33 ~~vvIvEGi~~l~~--~~l~---~-~~D~~Ifvd~d~d~rl~Rri~RD 74 (222)
..-+|++|..--.. ..+. . ..|..||+++|.++.+.|...|-
T Consensus 78 ~~~~ilDGfPrt~~Qa~~l~~~~~~~~~~vi~L~~~~~~~~~Rl~~R~ 125 (210)
T TIGR01351 78 ENGFILDGFPRTLSQAEALDALLKEKIDAVIELDVPDEELVERLSGRR 125 (210)
T ss_pred CCcEEEeCCCCCHHHHHHHHHHhccCCCEEEEEECCHHHHHHHHHCCC
Confidence 45789999433211 1222 2 36899999999999999999884
No 136
>TIGR01313 therm_gnt_kin carbohydrate kinase, thermoresistant glucokinase family. This model represents a subfamily of proteins that includes thermoresistant and thermosensitve isozymes of gluconate kinase (gluconokinase) in E. coli and other related proteins; members of this family are often named by similarity to the thermostable isozyme. These proteins show homology to shikimate kinases and adenylate kinases but not to gluconate kinases from the FGGY family of carbohydrate kinases.
Probab=59.66 E-value=59 Score=25.14 Aligned_cols=54 Identities=22% Similarity=0.265 Sum_probs=31.8
Q ss_pred CcEEEEeccccCCChhhhccC-----Ce-EEEEECCHHHHHHHHHhhcccccCCCHHHHHHHHHh
Q 027528 33 SDVILLEGILVFHDSRVRELM-----NM-KIFVDTDADVRLARRIRRDTVEKGRDIATVLDQYSK 91 (222)
Q Consensus 33 ~~vvIvEGi~~l~~~~l~~~~-----D~-~Ifvd~d~d~rl~Rri~RD~~~rg~~~~~~~~~~~~ 91 (222)
..+||..|.+ .+..++.+ ++ -+|+++|.++++.|...|... ....+.+..+|..
T Consensus 71 ~~~Vi~~t~~---~~~~r~~~~~~~~~~~~i~l~~~~e~~~~R~~~R~~~--~~~~~~i~~~~~~ 130 (163)
T TIGR01313 71 KVGIITCSAL---KRHYRDILREAEPNLHFIYLSGDKDVILERMKARKGH--FMKADMLESQFAA 130 (163)
T ss_pred CCEEEEeccc---HHHHHHHHHhcCCCEEEEEEeCCHHHHHHHHHhccCC--CCCHHHHHHHHHH
Confidence 3457777753 23333322 34 499999999999998888521 1234445555544
No 137
>cd01428 ADK Adenylate kinase (ADK) catalyzes the reversible phosphoryl transfer from adenosine triphosphates (ATP) to adenosine monophosphates (AMP) and to yield adenosine diphosphates (ADP). This enzyme is required for the biosynthesis of ADP and is essential for homeostasis of adenosine phosphates.
Probab=56.55 E-value=37 Score=26.94 Aligned_cols=43 Identities=19% Similarity=0.231 Sum_probs=30.6
Q ss_pred CcEEEEeccccCCC-----hhhhc---cCCeEEEEECCHHHHHHHHHhhcc
Q 027528 33 SDVILLEGILVFHD-----SRVRE---LMNMKIFVDTDADVRLARRIRRDT 75 (222)
Q Consensus 33 ~~vvIvEGi~~l~~-----~~l~~---~~D~~Ifvd~d~d~rl~Rri~RD~ 75 (222)
..-+|++|...-.. .+... ..++.||+++|.++.+.|...|..
T Consensus 77 ~~~~vldg~Pr~~~q~~~l~~~~~~~~~~~~~i~l~~~~~~~~~Rl~~R~~ 127 (194)
T cd01428 77 KKGFILDGFPRTVDQAEALDELLDEGIKPDKVIELDVPDEVLIERILGRRI 127 (194)
T ss_pred cCCEEEeCCCCCHHHHHHHHHHHhcCCCCCEEEEEECCHHHHHHHHHcCCc
Confidence 35578899533211 12222 578999999999999999999975
No 138
>PRK14021 bifunctional shikimate kinase/3-dehydroquinate synthase; Provisional
Probab=56.19 E-value=64 Score=30.95 Aligned_cols=90 Identities=14% Similarity=0.165 Sum_probs=50.9
Q ss_pred CcEEEEeccccCCChhhhcc-------CCeEEEEECCHHHHHHHHHhhccc--ccCCCHHHHHHHHHhccccchhhhccc
Q 027528 33 SDVILLEGILVFHDSRVREL-------MNMKIFVDTDADVRLARRIRRDTV--EKGRDIATVLDQYSKFVKPAFDDFILP 103 (222)
Q Consensus 33 ~~vvIvEGi~~l~~~~l~~~-------~D~~Ifvd~d~d~rl~Rri~RD~~--~rg~~~~~~~~~~~~~~~p~~~~~i~p 103 (222)
.+.||--|=-+..+++.+.. ....||+++|.++...|.-.+..+ -.+.+.+.+.+-|.. ..|.|
T Consensus 76 ~~~VIs~GGG~v~~~~n~~~L~~~~~~~g~vv~L~~~~~~l~~Rl~~~~~RPll~~~~~~~~~~l~~~-R~~~Y------ 148 (542)
T PRK14021 76 FDGIFSLGGGAPMTPSTQHALASYIAHGGRVVYLDADPKEAMERANRGGGRPMLNGDANKRWKKLFKQ-RDPVF------ 148 (542)
T ss_pred CCeEEECCCchhCCHHHHHHHHHHHhcCCEEEEEECCHHHHHHHHhCCCCCCCCCCCcHHHHHHHHHH-HHHHH------
Confidence 35666666655555654442 358999999999998885332211 112233455455554 35555
Q ss_pred cCCCccEEEcCCCCch-hhHHHHHHHHH
Q 027528 104 TKKYADIIIPRGGDNH-VAIDLIVQHIR 130 (222)
Q Consensus 104 ~~~~ADlvi~~~~~~~-~~~~~~~~~i~ 130 (222)
.+.||++|+....+. ...+.+++.+.
T Consensus 149 -~~~Ad~~i~~~~~~~~~~~~~i~~~~~ 175 (542)
T PRK14021 149 -RQVANVHVHTRGLTPQAAAKKLIDMVA 175 (542)
T ss_pred -HhhCCEEEECCCCCHHHHHHHHHHHHH
Confidence 456899998554432 23344444443
No 139
>PRK04220 2-phosphoglycerate kinase; Provisional
Probab=50.50 E-value=37 Score=30.17 Aligned_cols=97 Identities=19% Similarity=0.257 Sum_probs=52.3
Q ss_pred CCcEEEEeccccCCChhh-hc-----cCCeEEEEEC-CHHHHHHHHHhhcccccCCCHHHHHHHHHhccccchhhhcccc
Q 027528 32 PSDVILLEGILVFHDSRV-RE-----LMNMKIFVDT-DADVRLARRIRRDTVEKGRDIATVLDQYSKFVKPAFDDFILPT 104 (222)
Q Consensus 32 ~~~vvIvEGi~~l~~~~l-~~-----~~D~~Ifvd~-d~d~rl~Rri~RD~~~rg~~~~~~~~~~~~~~~p~~~~~i~p~ 104 (222)
...=+|+||++.. |.+ .+ ..-..+++.. +++.-..|...|.... .+..+..+..+.. .+--.+..++..
T Consensus 189 ~g~s~IiEGvhl~--P~~i~~~~~~~~~~i~~~l~i~~ee~h~~RF~~R~~~~-~r~~~~y~~~~~~-ir~iq~~l~~~a 264 (301)
T PRK04220 189 EGISVIIEGVHIV--PGFIKEKYLENPNVFMFVLTLSDEEAHKARFYARARVS-RRPAERYLKNFEI-IREINDYIVEKA 264 (301)
T ss_pred hCCcEEEecCCCC--HHHHHHhhhcCCCEEEEEEEECCHHHHHHHHHHHHhhh-CCchhhHHHHHHH-HHHHHHHHHHHH
Confidence 4467999999996 433 32 1124555553 5577777777776433 4444444444433 232323333333
Q ss_pred CCC-ccEEEcCCCCchhhHHHHHHHHHHHhc
Q 027528 105 KKY-ADIIIPRGGDNHVAIDLIVQHIRTKLG 134 (222)
Q Consensus 105 ~~~-ADlvi~~~~~~~~~~~~~~~~i~~~l~ 134 (222)
+++ ..+ |+| .+-+-+++.+++.|.+.+.
T Consensus 265 ~~~~ip~-I~n-~~i~~s~~~~~~~i~~~~~ 293 (301)
T PRK04220 265 KKHGVPV-IEN-ISIEETVDKILEIITERLS 293 (301)
T ss_pred HHhCCCe-ecC-ccHHHHHHHHHHHHHHHHH
Confidence 322 332 443 2445677788888877774
No 140
>PRK00889 adenylylsulfate kinase; Provisional
Probab=48.82 E-value=17 Score=28.72 Aligned_cols=38 Identities=24% Similarity=0.444 Sum_probs=23.7
Q ss_pred CcEEEEeccccCC--ChhhhccCC--eEEEEECCHHHHHHHH
Q 027528 33 SDVILLEGILVFH--DSRVRELMN--MKIFVDTDADVRLARR 70 (222)
Q Consensus 33 ~~vvIvEGi~~l~--~~~l~~~~D--~~Ifvd~d~d~rl~Rr 70 (222)
..+|++.++.... .+.++.... .-||+++|.++...|.
T Consensus 76 g~~vi~~~~~~~~~~~~~l~~~~~~~~~v~l~~~~e~~~~R~ 117 (175)
T PRK00889 76 GVIVLVSAISPYRETREEVRANIGNFLEVFVDAPLEVCEQRD 117 (175)
T ss_pred CCEEEEecCCCCHHHHHHHHhhcCCeEEEEEcCCHHHHHHhC
Confidence 4567787775421 123333321 4799999999888773
No 141
>PF02873 MurB_C: UDP-N-acetylenolpyruvoylglucosamine reductase, C-terminal domain; InterPro: IPR011601 This entry represents a C-terminal conserved region of UDP-N-acetylenolpyruvoylglucosamine reductase 1.1.1.158 from EC, which is also called UDP-N-acetylmuramate dehydrogenase. It is a part of the pathway for the biosynthesis of the UDP-N-acetylmuramoyl-pentapeptide, which is a precursor of bacterial peptidoglycan. ; GO: 0008762 UDP-N-acetylmuramate dehydrogenase activity, 0055114 oxidation-reduction process; PDB: 1MBB_A 2Q85_A 2MBR_A 1UXY_A 1MBT_A 1HSK_A 2GQU_A 2GQT_A 3I99_A 3TX1_A.
Probab=47.56 E-value=24 Score=26.30 Aligned_cols=45 Identities=18% Similarity=0.406 Sum_probs=29.1
Q ss_pred cCCCccEEEcCCCCchhhHHHHHHHHHHHhccCCccccCCceeee
Q 027528 104 TKKYADIIIPRGGDNHVAIDLIVQHIRTKLGQHDLCKIYPNLYVI 148 (222)
Q Consensus 104 ~~~~ADlvi~~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~v~vl 148 (222)
..++|.++|+.+..+.-.+-.+++++++...++..-.+...|.++
T Consensus 60 S~kHanfivN~g~Ata~dv~~Li~~v~~~V~~~~Gi~Le~Ev~~i 104 (105)
T PF02873_consen 60 SEKHANFIVNHGGATAADVLALIEEVRERVKEKFGIELEPEVRII 104 (105)
T ss_dssp -SSSTTEEEE-SS--HHHHHHHHHHHHHHHHHHHS--B-BSSEEE
T ss_pred chhhCCeEEECCCCCHHHHHHHHHHHHHHHHHHHCCeeeeccEEe
Confidence 467999999988777777778899998888766655555555443
No 142
>cd02021 GntK Gluconate kinase (GntK) catalyzes the phosphoryl transfer from ATP to gluconate. The resulting product gluconate-6-phoshate is an important precursor of gluconate metabolism. GntK acts as a dimmer composed of two identical subunits.
Probab=47.06 E-value=52 Score=24.99 Aligned_cols=39 Identities=15% Similarity=0.100 Sum_probs=27.0
Q ss_pred eEEEEECCHHHHHHHHHhhcccccCCCHHHHHHHHHhcccc
Q 027528 55 MKIFVDTDADVRLARRIRRDTVEKGRDIATVLDQYSKFVKP 95 (222)
Q Consensus 55 ~~Ifvd~d~d~rl~Rri~RD~~~rg~~~~~~~~~~~~~~~p 95 (222)
..||+++|.++...|...|+.. ..+.+.+..++.....|
T Consensus 100 ~~v~l~~~~~~~~~R~~~R~~~--~~~~~~~~~~~~~~~~p 138 (150)
T cd02021 100 RFVHLDGPREVLAERLAARKGH--FMPADLLDSQFETLEPP 138 (150)
T ss_pred EEEEEECCHHHHHHHHHhcccC--CCCHHHHHHHHHHhcCC
Confidence 5899999999999999999643 34455555555543333
No 143
>TIGR03707 PPK2_P_aer polyphosphate kinase 2, PA0141 family. Members of this protein family are designated polyphosphate kinase 2 (PPK2) after the characterized protein in Pseudomonas aeruginosa. This family comprises one of three well-separated clades in the larger family described by Pfam model pfam03976. PA0141 from this family has been shown capable of operating in reverse, with GDP preferred (over ADP) as a substrate, producing GTP (or ATP) by transfer of a phosphate residue from polyphosphate. Most species with a member of this family also encode a polyphosphate kinase 1 (PPK1).
Probab=46.67 E-value=1.2e+02 Score=25.75 Aligned_cols=80 Identities=19% Similarity=0.177 Sum_probs=51.1
Q ss_pred eEEEEECCHHHHHHHHHhhccc---ccCCCHHHHH--HHHHhccccchhhhcccc-CCCccEEEcCCCCchhhHHHHHHH
Q 027528 55 MKIFVDTDADVRLARRIRRDTV---EKGRDIATVL--DQYSKFVKPAFDDFILPT-KKYADIIIPRGGDNHVAIDLIVQH 128 (222)
Q Consensus 55 ~~Ifvd~d~d~rl~Rri~RD~~---~rg~~~~~~~--~~~~~~~~p~~~~~i~p~-~~~ADlvi~~~~~~~~~~~~~~~~ 128 (222)
+|+|++.+.+....|..+|--. ...-++++.. ..|.. ....+++.+.-| ..+|--.|=.+.+-..+--.+.+.
T Consensus 138 lKfflhIsk~eQ~kRl~~r~~~p~k~Wk~~~~D~~~~~~yd~-y~~a~e~~l~~T~t~~APW~iI~a~dk~~a~l~v~~~ 216 (230)
T TIGR03707 138 FKYWLSVSREEQLRRFKARIDDPLKQWKLSPMDLASLDRWDD-YSRAKDEMFARTDTPEAPWTVVRSDDKKRARLNAIRH 216 (230)
T ss_pred EEEEEECCHHHHHHHHHHHhcCCcccccCCHHHHHHHHhHHH-HHHHHHHHHHhcCCCCCCeEEEcCCCHHHHHHHHHHH
Confidence 9999999999999998877422 2234555554 33554 355666666665 466775554454545555566777
Q ss_pred HHHHhcc
Q 027528 129 IRTKLGQ 135 (222)
Q Consensus 129 i~~~l~~ 135 (222)
|.+.|+.
T Consensus 217 i~~~l~~ 223 (230)
T TIGR03707 217 ILSRLDY 223 (230)
T ss_pred HHHhCCC
Confidence 7776653
No 144
>PLN02842 nucleotide kinase
Probab=45.32 E-value=1.6e+02 Score=28.26 Aligned_cols=23 Identities=17% Similarity=0.340 Sum_probs=20.1
Q ss_pred cCCeEEEEECCHHHHHHHHHhhc
Q 027528 52 LMNMKIFVDTDADVRLARRIRRD 74 (222)
Q Consensus 52 ~~D~~Ifvd~d~d~rl~Rri~RD 74 (222)
..|+.||+|+|.++.+.|...|-
T Consensus 100 ~PDlVI~LDvpdevlleRl~gR~ 122 (505)
T PLN02842 100 RPDIFILLDVPDEILIDRCVGRR 122 (505)
T ss_pred CCCEEEEEeCCHHHHHHHHhccc
Confidence 36899999999999999988773
No 145
>COG1885 Uncharacterized protein conserved in archaea [Function unknown]
Probab=45.12 E-value=1.3e+02 Score=22.56 Aligned_cols=88 Identities=16% Similarity=0.290 Sum_probs=60.2
Q ss_pred ccEEEcCCCCchhhHHHHHHHHHHHhccCCc-----------c----ccCCceeeeccchhhhhhhhhhhcCCCCchhhh
Q 027528 108 ADIIIPRGGDNHVAIDLIVQHIRTKLGQHDL-----------C----KIYPNLYVIHSTFQIRGMHTLIRDSQTTKHDFV 172 (222)
Q Consensus 108 ADlvi~~~~~~~~~~~~~~~~i~~~l~~~~~-----------~----~~~~~v~vl~~~p~~~~~lt~lRd~~t~~~~Fr 172 (222)
|-+++.+-.+.+-++..-+....+.|..+++ | ...+.+.+.-++.++.-+|+ |+==|..+.
T Consensus 10 Aa~iVrdV~s~ddAi~iAiseagk~Ln~~~LdyV~ie~G~t~CP~Cg~~~e~~fvva~~aLVgl~l~-mkVFNaes~--- 85 (115)
T COG1885 10 AAWIVRDVESVDDAINIAISEAGKRLNKPDLDYVEIEVGSTSCPKCGEPFESAFVVANTALVGLILS-MKVFNAESD--- 85 (115)
T ss_pred eeEEEeccccHHHHHHHHHHHHHHHhccCCCCeEEEecccccCCCCCCccceeEEEecceeEEEEEE-EEEecCCCH---
Confidence 4556665555667888888888888875543 2 13445677765655555443 443344443
Q ss_pred hhHHHHHHHHHHHHhCCCCCeeeEEeC
Q 027528 173 FYSDRLIRLVVEHGLGHLPFTEKQVIT 199 (222)
Q Consensus 173 ~~~~~i~~lL~~ea~~~l~~~~~~V~T 199 (222)
++..||+.--+=.++++.|.+..+|++
T Consensus 86 EHA~RIAK~eIGk~L~~iPL~vveV~e 112 (115)
T COG1885 86 EHAERIAKAEIGKALKDIPLEVVEVTE 112 (115)
T ss_pred HHHHHHHHHHHhhHhhcCCceEEEEEe
Confidence 577999999999999999999888764
No 146
>TIGR03575 selen_PSTK_euk L-seryl-tRNA(Sec) kinase, eukaryotic. Members of this protein are L-seryl-tRNA(Sec) kinase. This enzyme is part of a two-step pathway in Eukaryota and Archaea for performing selenocysteine biosynthesis by changing serine misacylated on selenocysteine-tRNA to selenocysteine. This enzyme performs the first step, phosphorylation of the OH group of the serine side chain. This family represents eukaryotic proteins with this activity.
Probab=44.32 E-value=2.4e+02 Score=25.44 Aligned_cols=76 Identities=16% Similarity=0.169 Sum_probs=46.8
Q ss_pred CCcEEEEeccccCCCh--hh---hccC---CeEEEEECCHHHHHHHHHhhcccccCCCHHHHHHHHHhccccch--hhhc
Q 027528 32 PSDVILLEGILVFHDS--RV---RELM---NMKIFVDTDADVRLARRIRRDTVEKGRDIATVLDQYSKFVKPAF--DDFI 101 (222)
Q Consensus 32 ~~~vvIvEGi~~l~~~--~l---~~~~---D~~Ifvd~d~d~rl~Rri~RD~~~rg~~~~~~~~~~~~~~~p~~--~~~i 101 (222)
..-++|+++.|..... ++ .... -..||+++|.++++.|.-.|.. ..+.+.+-..+...-.|+- ..
T Consensus 126 rpllvilDd~fy~ks~Ryel~~LAr~~~~~~~~V~ld~ple~~l~RN~~R~~---~v~devie~m~~r~E~P~~~~nr-- 200 (340)
T TIGR03575 126 RPLCLVLDDNFYYQSMRYEVYQLARKYSLGFCQLFLDCPVESCLLRNKQRPV---PLPDETIQLMGRKIEKPNPEKNA-- 200 (340)
T ss_pred CCCCceecCCCCCHHHHHHHHHHHHHhCCCEEEEEEeCCHHHHHHHHhcCCC---CCCHHHHHHHHHHhcCCCCCCCC--
Confidence 3458999999986432 11 1111 2789999999999999998852 3444444454554445552 22
Q ss_pred cccCCCccEEEcCC
Q 027528 102 LPTKKYADIIIPRG 115 (222)
Q Consensus 102 ~p~~~~ADlvi~~~ 115 (222)
.....+.++.+
T Consensus 201 ---Wd~pl~~v~~~ 211 (340)
T TIGR03575 201 ---WEHNSLVIQSS 211 (340)
T ss_pred ---CCCCeEEEecC
Confidence 23345777653
No 147
>COG0529 CysC Adenylylsulfate kinase and related kinases [Inorganic ion transport and metabolism]
Probab=43.62 E-value=1.1e+02 Score=25.42 Aligned_cols=85 Identities=15% Similarity=0.275 Sum_probs=44.4
Q ss_pred cEEEEeccccCCC--hhhhccCC----eEEEEECCHHHHHHHHHhhcccccCCCHHHHHHHHHhccccchhhhcccc--C
Q 027528 34 DVILLEGILVFHD--SRVRELMN----MKIFVDTDADVRLARRIRRDTVEKGRDIATVLDQYSKFVKPAFDDFILPT--K 105 (222)
Q Consensus 34 ~vvIvEGi~~l~~--~~l~~~~D----~~Ifvd~d~d~rl~Rri~RD~~~rg~~~~~~~~~~~~~~~p~~~~~i~p~--~ 105 (222)
-|+|+--+--+.. ...|.++. +-|||+||.++|.+ ||- .-..++-.+--.++|--.-.|+ .
T Consensus 96 ~iviva~ISP~r~~R~~aR~~~~~~~FiEVyV~~pl~vce~----RDp-------KGLYkKAr~GeI~~fTGid~pYE~P 164 (197)
T COG0529 96 LIVIVAFISPYREDRQMARELLGEGEFIEVYVDTPLEVCER----RDP-------KGLYKKARAGEIKNFTGIDSPYEAP 164 (197)
T ss_pred eEEEEEeeCccHHHHHHHHHHhCcCceEEEEeCCCHHHHHh----cCc-------hHHHHHHHcCCCCCCcCCCCCCCCC
Confidence 3444444443332 24556655 78999999999854 443 2233322222333333222232 5
Q ss_pred CCccEEEcCCCCc-hhhHHHHHHHH
Q 027528 106 KYADIIIPRGGDN-HVAIDLIVQHI 129 (222)
Q Consensus 106 ~~ADlvi~~~~~~-~~~~~~~~~~i 129 (222)
.+.|++++....+ +...+.+++.+
T Consensus 165 ~~Pel~l~t~~~~vee~v~~i~~~l 189 (197)
T COG0529 165 ENPELHLDTDRNSVEECVEQILDLL 189 (197)
T ss_pred CCCeeEeccccCCHHHHHHHHHHHH
Confidence 7889999865443 23444444443
No 148
>PRK14532 adenylate kinase; Provisional
Probab=39.65 E-value=1.7e+02 Score=23.17 Aligned_cols=42 Identities=12% Similarity=0.211 Sum_probs=28.7
Q ss_pred CcEEEEeccccCCC------hhhh---ccCCeEEEEECCHHHHHHHHHhhc
Q 027528 33 SDVILLEGILVFHD------SRVR---ELMNMKIFVDTDADVRLARRIRRD 74 (222)
Q Consensus 33 ~~vvIvEGi~~l~~------~~l~---~~~D~~Ifvd~d~d~rl~Rri~RD 74 (222)
..-+|++|..--.. ..+. ...|+.||+++|.++.+.|...|-
T Consensus 78 ~~g~vldg~pr~~~q~~~~~~~l~~~g~~pd~vi~L~v~~~~~~~Rl~~R~ 128 (188)
T PRK14532 78 AGGAIFDGFPRTVAQAEALDKMLASRGQKIDVVIRLKVDDEALIERIVKRF 128 (188)
T ss_pred cCcEEEeCCCCCHHHHHHHHHHHHhcCCCCCEEEEEECCHHHHHHHHHcCc
Confidence 45678898654211 0111 236799999999999999988773
No 149
>TIGR03709 PPK2_rel_1 polyphosphate:nucleotide phosphotransferase, PPK2 family. Members of this protein family belong to the polyphosphate kinase 2 (PPK2) family, which is not related in sequence to PPK1. While PPK1 tends to act in the biosynthesis of polyphosphate, or poly(P), members of the PPK2 family tend to use the terminal phosphate of poly(P) to regenerate ATP or GTP from the corresponding nucleoside diphosphate, or ADP from AMP as is the case with polyphosphate:AMP phosphotransferase (PAP). Members of this protein family most likely transfer the terminal phosphate between poly(P) and some nucleotide, but it is not clear which.
Probab=37.36 E-value=2e+02 Score=25.04 Aligned_cols=80 Identities=16% Similarity=0.148 Sum_probs=50.0
Q ss_pred eEEEEECCHHHHHHHHHhhc---ccccCCCHHHHH--HHHHhccccchhhhcccc-CCCccEEEcCCCCchhhHHHHHHH
Q 027528 55 MKIFVDTDADVRLARRIRRD---TVEKGRDIATVL--DQYSKFVKPAFDDFILPT-KKYADIIIPRGGDNHVAIDLIVQH 128 (222)
Q Consensus 55 ~~Ifvd~d~d~rl~Rri~RD---~~~rg~~~~~~~--~~~~~~~~p~~~~~i~p~-~~~ADlvi~~~~~~~~~~~~~~~~ 128 (222)
+|+|++.+.+....|...|- .+....++.+.. ++|.. ....+++.+.-+ ...|--.|=.+.+-..+--.+.+.
T Consensus 163 iKffLhIsk~eQ~kRl~~r~~~p~k~Wk~s~~D~~~~~~yd~-y~~a~e~~l~~T~t~~APW~iI~a~dk~~a~l~v~~~ 241 (264)
T TIGR03709 163 LKFFLHISKEEQKKRFLARLDDPTKNWKFSPADLKERAYWDD-YMEAYEDALTATSTKHAPWYVVPADDKWFRRLAVAEI 241 (264)
T ss_pred EEEEEeCCHHHHHHHHHHHhcCCcccccCCHHHHHHHHhHHH-HHHHHHHHHHhcCCCCCCeEEEcCCCHHHHHHHHHHH
Confidence 99999999999988887772 122345665554 44554 355666666654 467775554454545554456666
Q ss_pred HHHHhcc
Q 027528 129 IRTKLGQ 135 (222)
Q Consensus 129 i~~~l~~ 135 (222)
|.+.|+.
T Consensus 242 ll~~l~~ 248 (264)
T TIGR03709 242 LLDALES 248 (264)
T ss_pred HHHHHHH
Confidence 6666654
No 150
>PRK13906 murB UDP-N-acetylenolpyruvoylglucosamine reductase; Provisional
Probab=36.81 E-value=43 Score=29.72 Aligned_cols=49 Identities=6% Similarity=0.104 Sum_probs=38.2
Q ss_pred cCCCccEEEcCCCCchhhHHHHHHHHHHHhccCCccccCCceeeeccch
Q 027528 104 TKKYADIIIPRGGDNHVAIDLIVQHIRTKLGQHDLCKIYPNLYVIHSTF 152 (222)
Q Consensus 104 ~~~~ADlvi~~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~v~vl~~~p 152 (222)
..++|.++|+.+..+.-.+-.+++++++...++..-.+...|.++...|
T Consensus 256 S~kHanfivN~g~At~~di~~Li~~v~~~V~~~~gi~Le~Ev~~~g~~~ 304 (307)
T PRK13906 256 STKHAGFMVNVDNGTATDYENLIHYVQKTVKEKFGIELNREVRIIGEHP 304 (307)
T ss_pred ccccccEEEECCCCCHHHHHHHHHHHHHHHHHHHCCEeeEeeEEEccCc
Confidence 3689999999887777778889999999988777766666677764333
No 151
>PRK12339 2-phosphoglycerate kinase; Provisional
Probab=35.60 E-value=80 Score=25.97 Aligned_cols=44 Identities=14% Similarity=0.164 Sum_probs=26.7
Q ss_pred CCcEEEEeccccCCCh--hhhccCCeEEEEEC-CHHHHHHHHHhhcc
Q 027528 32 PSDVILLEGILVFHDS--RVRELMNMKIFVDT-DADVRLARRIRRDT 75 (222)
Q Consensus 32 ~~~vvIvEGi~~l~~~--~l~~~~D~~Ifvd~-d~d~rl~Rri~RD~ 75 (222)
...-+|+||.+....- ..+......+|+.+ |++..+.|...|..
T Consensus 96 ~G~sVIvEgv~l~p~~~~~~~~~~v~~i~l~v~d~e~lr~Rl~~R~~ 142 (197)
T PRK12339 96 NGEDLVIESLYFHPPMIDENRTNNIRAFYLYIRDAELHRSRLADRIN 142 (197)
T ss_pred cCCCEEEEecCcCHHHHHHHHhcCeEEEEEEeCCHHHHHHHHHHHhh
Confidence 4466999999886321 11112345677766 46666677777753
No 152
>COG1936 Predicted nucleotide kinase (related to CMP and AMP kinases) [Nucleotide transport and metabolism]
Probab=35.45 E-value=1.1e+02 Score=25.10 Aligned_cols=49 Identities=14% Similarity=0.190 Sum_probs=38.3
Q ss_pred CcEEEEeccccCCChhhhccCCeEEEEECCHHHHHHHHHhhcccccCCCHHHHHHHHH
Q 027528 33 SDVILLEGILVFHDSRVRELMNMKIFVDTDADVRLARRIRRDTVEKGRDIATVLDQYS 90 (222)
Q Consensus 33 ~~vvIvEGi~~l~~~~l~~~~D~~Ifvd~d~d~rl~Rri~RD~~~rg~~~~~~~~~~~ 90 (222)
..-.|+||.++=. -+.+|+.|-+.++++.-..|.-.| |++++.+....+
T Consensus 67 ~~~~Ivd~H~~hl----~~~~dlVvVLR~~p~~L~~RLk~R-----Gy~~eKI~ENve 115 (180)
T COG1936 67 EGSGIVDSHLSHL----LPDCDLVVVLRADPEVLYERLKGR-----GYSEEKILENVE 115 (180)
T ss_pred cCCeEeechhhhc----CCCCCEEEEEcCCHHHHHHHHHHc-----CCCHHHHHHHHH
Confidence 4678889988722 237899999999999988887665 999999886544
No 153
>KOG4235 consensus Mitochondrial thymidine kinase 2/deoxyguanosine kinase [Nucleotide transport and metabolism]
Probab=34.96 E-value=73 Score=27.00 Aligned_cols=34 Identities=18% Similarity=0.234 Sum_probs=26.8
Q ss_pred cCCeEEEEECCHHHHHHHHHhhcccc-cCCCHHHH
Q 027528 52 LMNMKIFVDTDADVRLARRIRRDTVE-KGRDIATV 85 (222)
Q Consensus 52 ~~D~~Ifvd~d~d~rl~Rri~RD~~~-rg~~~~~~ 85 (222)
..|.-||+.+++++|+.|..+|--.| .|-.++..
T Consensus 153 ~~dgiIYLrasPetc~~Ri~~R~R~EE~gipL~YL 187 (244)
T KOG4235|consen 153 SLDGIIYLRASPETCYKRIYLRAREEEKGIPLKYL 187 (244)
T ss_pred ccceEEEeecChHHHHHHHHHHhhhhhcCCcHHHH
Confidence 37899999999999999999886554 55555444
No 154
>COG2074 2-phosphoglycerate kinase [Carbohydrate transport and metabolism]
Probab=31.75 E-value=1.1e+02 Score=26.89 Aligned_cols=100 Identities=13% Similarity=0.251 Sum_probs=50.1
Q ss_pred CCcEEEEeccccCC---ChhhhccCCeEEEEEC-CHHHHHHHHHhhcccc-cCCCHHHHHHHHHhccccchhhhccccCC
Q 027528 32 PSDVILLEGILVFH---DSRVRELMNMKIFVDT-DADVRLARRIRRDTVE-KGRDIATVLDQYSKFVKPAFDDFILPTKK 106 (222)
Q Consensus 32 ~~~vvIvEGi~~l~---~~~l~~~~D~~Ifvd~-d~d~rl~Rri~RD~~~-rg~~~~~~~~~~~~~~~p~~~~~i~p~~~ 106 (222)
...=+|+||+|..- +++......+-.|+.+ |++.-..|...|.... +.+.....+..+.. .+-- .+|.....+
T Consensus 185 eG~~lIIEGvHlVPg~i~~~~~~~n~~~~~l~i~dee~Hr~RF~~R~~~t~~~rp~~Ryl~yf~E-iR~I-~Dyl~~~Ar 262 (299)
T COG2074 185 EGEDLIIEGVHLVPGLIKEEALGNNVFMFMLYIADEELHRERFYDRIRYTHASRPGGRYLEYFKE-IRTI-HDYLVERAR 262 (299)
T ss_pred cCcceEEEeeeeccccccHhhhccceEEEEEEeCCHHHHHHHHHHHHHHHhccCchhHHHHHHHH-HHHH-HHHHHHHHH
Confidence 34557899999862 1222233355566665 5666677777887543 12233333332221 1212 233333333
Q ss_pred CccEEEcCCCCchhhHHHHHHHHHHHh
Q 027528 107 YADIIIPRGGDNHVAIDLIVQHIRTKL 133 (222)
Q Consensus 107 ~ADlvi~~~~~~~~~~~~~~~~i~~~l 133 (222)
.-++=+-++.+-+..++.+++.|.+..
T Consensus 263 e~gVPvI~n~di~etv~~il~~i~~~~ 289 (299)
T COG2074 263 EHGVPVIENDDIDETVDRILEDIRKRT 289 (299)
T ss_pred hcCCCeeccccHHHHHHHHHHHHHHHH
Confidence 333322223244556677777777665
No 155
>PHA03136 thymidine kinase; Provisional
Probab=29.89 E-value=37 Score=31.22 Aligned_cols=23 Identities=22% Similarity=0.161 Sum_probs=20.0
Q ss_pred CCeEEEEECCHHHHHHHHHhhcc
Q 027528 53 MNMKIFVDTDADVRLARRIRRDT 75 (222)
Q Consensus 53 ~D~~Ifvd~d~d~rl~Rri~RD~ 75 (222)
-|..||++++.++.+.|.-+|.-
T Consensus 192 pD~IIyL~l~~e~~~~RI~kRgR 214 (378)
T PHA03136 192 GGNIVIMDLDECEHAERIIARGR 214 (378)
T ss_pred CCEEEEEeCCHHHHHHHHHHcCC
Confidence 56889999999999999988854
No 156
>PRK13951 bifunctional shikimate kinase/3-dehydroquinate synthase; Provisional
Probab=28.85 E-value=1.9e+02 Score=27.33 Aligned_cols=67 Identities=16% Similarity=0.258 Sum_probs=37.9
Q ss_pred CCcEEEEeccccCCChhhhccC--CeEEEEECCHHHHHHHHHhhcccccCCCHHHHHHHHHhccccchhh
Q 027528 32 PSDVILLEGILVFHDSRVRELM--NMKIFVDTDADVRLARRIRRDTVEKGRDIATVLDQYSKFVKPAFDD 99 (222)
Q Consensus 32 ~~~vvIvEGi~~l~~~~l~~~~--D~~Ifvd~d~d~rl~Rri~RD~~~rg~~~~~~~~~~~~~~~p~~~~ 99 (222)
..+.||--|--...+++-++.+ +..||+++|.++...|.-.|.----....+.+.+.|.. ..|.|.+
T Consensus 69 ~~~~Vis~Gggvv~~~~~r~~l~~~~vI~L~as~e~l~~Rl~~~~RPLl~~~~e~l~~L~~~-R~~lY~~ 137 (488)
T PRK13951 69 RDNVVVATGGGVVIDPENRELLKKEKTLFLYAPPEVLMERVTTENRPLLREGKERIREIWER-RKQFYTE 137 (488)
T ss_pred cCCEEEECCCccccChHHHHHHhcCeEEEEECCHHHHHHHhccCCCCCccccHHHHHHHHHH-HHHHHhc
Confidence 3456776675554444433322 46899999999988887443110001123555566665 4677754
No 157
>TIGR01223 Pmev_kin_anim phosphomevalonate kinase, animal type. This enzyme is part of the mevalonate pathway, one of two alternative pathways for the biosynthesis of IPP. In an example of nonorthologous gene displacement, two different types of phosphomevalonate kinase are found. One is this type, found in animals. The other is the ERG8 type, found in plants and fungi (TIGR01219) and in Gram-positive bacteria (TIGR01220).
Probab=27.32 E-value=2.8e+02 Score=22.87 Aligned_cols=41 Identities=17% Similarity=0.070 Sum_probs=28.8
Q ss_pred CcEEEEeccccCCC-hhhhccCC---eEEEEECCHHHHHHHHHhh
Q 027528 33 SDVILLEGILVFHD-SRVRELMN---MKIFVDTDADVRLARRIRR 73 (222)
Q Consensus 33 ~~vvIvEGi~~l~~-~~l~~~~D---~~Ifvd~d~d~rl~Rri~R 73 (222)
.+++||-|+=--.+ ..++..++ +.|-|.++.++|.+|+-..
T Consensus 91 ~~v~iIsD~Rr~~dv~~f~~~~g~~~~~VRV~AseetR~~Rgw~F 135 (182)
T TIGR01223 91 QPIWLVSDTRRVSDIQWFREAYGAVTQTVRVVALEQSRQQRGWVF 135 (182)
T ss_pred CCEEEEeCCCcccHHHHHHHHcCCceEEEEEecCHHHHHHHHHhc
Confidence 46899988755432 13444543 7789999999999998443
No 158
>PRK13904 murB UDP-N-acetylenolpyruvoylglucosamine reductase; Provisional
Probab=26.29 E-value=70 Score=27.75 Aligned_cols=42 Identities=7% Similarity=0.107 Sum_probs=31.7
Q ss_pred CCCccEEEcCCCCchhhHHHHHHHHHHHhccCCccccCCcee
Q 027528 105 KKYADIIIPRGGDNHVAIDLIVQHIRTKLGQHDLCKIYPNLY 146 (222)
Q Consensus 105 ~~~ADlvi~~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~v~ 146 (222)
.++|.++|+.+....-.+-.+++++++...++..-.+...|.
T Consensus 214 ~kHanfIVN~g~Ata~Dvl~Li~~v~~~V~e~~Gi~Le~Ev~ 255 (257)
T PRK13904 214 EEHANFLVNLGGATFEDALDLIELAKKRVLEEFGINLEEEVI 255 (257)
T ss_pred hhhcCeEEECCCCCHHHHHHHHHHHHHHHHHHHCCeeeEEeE
Confidence 588999999887777777788999999887765554444443
No 159
>PRK05537 bifunctional sulfate adenylyltransferase subunit 1/adenylylsulfate kinase protein; Validated
Probab=26.09 E-value=1.5e+02 Score=28.76 Aligned_cols=92 Identities=16% Similarity=0.222 Sum_probs=45.6
Q ss_pred CCCcEEEEeccccCCC--hhhhccC----C-eEEEEECCHHHHHHHHHhhcccccCCCHHHHHHHHHhccccchhhhccc
Q 027528 31 NPSDVILLEGILVFHD--SRVRELM----N-MKIFVDTDADVRLARRIRRDTVEKGRDIATVLDQYSKFVKPAFDDFILP 103 (222)
Q Consensus 31 ~~~~vvIvEGi~~l~~--~~l~~~~----D-~~Ifvd~d~d~rl~Rri~RD~~~rg~~~~~~~~~~~~~~~p~~~~~i~p 103 (222)
....++|+.-++.... ++.+.++ . ..||+++|.+++..| ..|...... ..+. ++.......|-| .
T Consensus 463 ~~Gg~vI~~~~~p~~~~R~~nr~llk~~g~fivV~L~~p~e~l~~R-~rr~Ll~~~-~~~~-i~~l~~~R~~yy----~- 534 (568)
T PRK05537 463 KNGGIAICAPIAPYRATRREVREMIEAYGGFIEVHVATPLEVCEQR-DRKGLYAKA-REGK-IKGFTGISDPYE----P- 534 (568)
T ss_pred hCCCEEEEEeCCchHHHHHHHHHHHhhcCCEEEEEEcCCHHHHHHh-ccccccccc-hhch-hhcccccccccc----C-
Confidence 3457777777755321 2333333 2 479999999988766 344332111 1122 222222223311 1
Q ss_pred cCCCccEEEcCCCCchhhHHHHHHHHHHHhc
Q 027528 104 TKKYADIIIPRGGDNHVAIDLIVQHIRTKLG 134 (222)
Q Consensus 104 ~~~~ADlvi~~~~~~~~~~~~~~~~i~~~l~ 134 (222)
...||++|+....+ ++.+++.|.+.|.
T Consensus 535 -p~~Adl~IDt~~~s---~~eiv~~Il~~L~ 561 (568)
T PRK05537 535 -PANPELVIDTTNVT---PDECAHKILLYLE 561 (568)
T ss_pred -CCCCcEEEECCCCC---HHHHHHHHHHHHH
Confidence 24699999865322 3333444444443
No 160
>PRK14648 UDP-N-acetylenolpyruvoylglucosamine reductase; Provisional
Probab=25.19 E-value=85 Score=28.60 Aligned_cols=46 Identities=9% Similarity=0.122 Sum_probs=37.9
Q ss_pred cCCCccEEEcCCCCchhhHHHHHHHHHHHhccCCccccCCceeeec
Q 027528 104 TKKYADIIIPRGGDNHVAIDLIVQHIRTKLGQHDLCKIYPNLYVIH 149 (222)
Q Consensus 104 ~~~~ADlvi~~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~v~vl~ 149 (222)
..++|.++|+.++.+.-.+..+++++++...++..-.+...|.++.
T Consensus 297 S~kHAnfIVN~G~Ata~Dvl~Li~~v~~~V~ekfGI~Le~EV~iig 342 (354)
T PRK14648 297 APWHGNLIINTGNATAHQVRTLLRVVRQRVFETHGVWLEREIIFSG 342 (354)
T ss_pred ccccCcEEEECCCCCHHHHHHHHHHHHHHHHHHHCCeeeEeeEEeC
Confidence 3688999999887777778889999999998887777777777774
No 161
>TIGR03708 poly_P_AMP_trns polyphosphate:AMP phosphotransferase. Members of this protein family contain a domain duplication. The characterized member from Acinetobacter johnsonii is polyphosphate:AMP phosphotransferase (PAP), which can transfer the terminal phosphate from poly(P) to AMP, yielding ADP. In the opposite direction, this enzyme can synthesize poly(P). Each domain of this protein family is homologous to polyphosphate kinase, an enzyme that can run in the forward direction to extend a polyphosphate chain with a new terminal phosphate from ATP, or in reverse to make ATP (or GTP) from ADP (or GDP).
Probab=24.40 E-value=3.8e+02 Score=25.59 Aligned_cols=78 Identities=13% Similarity=0.187 Sum_probs=47.2
Q ss_pred eEEEEECCHHHHHHHHHhhc---ccccCCCHHHHH--HHHHhccccchhhhcccc-CCCccE-EEcCCCCchh----hHH
Q 027528 55 MKIFVDTDADVRLARRIRRD---TVEKGRDIATVL--DQYSKFVKPAFDDFILPT-KKYADI-IIPRGGDNHV----AID 123 (222)
Q Consensus 55 ~~Ifvd~d~d~rl~Rri~RD---~~~rg~~~~~~~--~~~~~~~~p~~~~~i~p~-~~~ADl-vi~~~~~~~~----~~~ 123 (222)
+|+|++.+.+....|...|- .+....++++.. +.|.. ....+++.+.-+ ..+|-- ||+.. +-.. ...
T Consensus 147 lKffLhIsk~EQ~kRl~~r~~~P~k~WK~s~~D~~~r~~wd~-Y~~a~e~ml~~T~t~~APW~vI~ad-dK~~arl~v~~ 224 (493)
T TIGR03708 147 LKFWLHLSKKQQKERLKKLEKDPETRWRVTPEDWKQLKVYDR-YRKLAERMLRYTSTPYAPWTVVEGE-DDRYRSLTVGR 224 (493)
T ss_pred EEEEEECCHHHHHHHHHHHhcCCccccCCCHHHHHHHHhHHH-HHHHHHHHHHhcCCCCCCeEEEcCC-CHHHHHHHHHH
Confidence 99999999999999887764 223345666664 33554 345566666655 456664 45533 3322 334
Q ss_pred HHHHHHHHHhc
Q 027528 124 LIVQHIRTKLG 134 (222)
Q Consensus 124 ~~~~~i~~~l~ 134 (222)
.|+..+...|.
T Consensus 225 ~il~~L~~~l~ 235 (493)
T TIGR03708 225 TLLAAIRARLA 235 (493)
T ss_pred HHHHHHHHHHh
Confidence 55555555553
No 162
>PRK14649 UDP-N-acetylenolpyruvoylglucosamine reductase; Provisional
Probab=24.25 E-value=87 Score=27.57 Aligned_cols=44 Identities=18% Similarity=0.194 Sum_probs=33.4
Q ss_pred cCCCccEEEcCCCCchhhHHHHHHHHHHHhccCCccccCCceee
Q 027528 104 TKKYADIIIPRGGDNHVAIDLIVQHIRTKLGQHDLCKIYPNLYV 147 (222)
Q Consensus 104 ~~~~ADlvi~~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~v~v 147 (222)
..++|.++|+.+..+.-.+-.+++++++...++..-.+...+.+
T Consensus 250 S~kHanfivN~g~Ata~di~~Li~~v~~~V~~~~Gi~Le~Ev~i 293 (295)
T PRK14649 250 ATRHANYIINLGGARAADILRLIDLARTRVLAQFGIELELEVRI 293 (295)
T ss_pred ccccCcEEEECCCCCHHHHHHHHHHHHHHHHHHHCCeeeEEeEE
Confidence 46899999998877777788889999988877665555444444
No 163
>COG0812 MurB UDP-N-acetylmuramate dehydrogenase [Cell envelope biogenesis, outer membrane]
Probab=24.19 E-value=1e+02 Score=27.36 Aligned_cols=46 Identities=17% Similarity=0.317 Sum_probs=37.1
Q ss_pred cCCCccEEEcCCCCchhhHHHHHHHHHHHhccCCccccCCceeeec
Q 027528 104 TKKYADIIIPRGGDNHVAIDLIVQHIRTKLGQHDLCKIYPNLYVIH 149 (222)
Q Consensus 104 ~~~~ADlvi~~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~v~vl~ 149 (222)
..++|.++|+.++.+.-.+..++++|++...++..-.+...|.++.
T Consensus 242 s~kHanflIN~g~ATa~Dv~~Li~~Vr~~V~e~fGi~LE~Ev~~Ig 287 (291)
T COG0812 242 SEKHANFLINTGNATAKDVLDLIEHVRQRVLEKFGIELEPEVKIIG 287 (291)
T ss_pred chhhCcEEEECCCCcHHHHHHHHHHHHHHHHHhhCceeeeeeeeec
Confidence 4789999999887777788899999999998887666655666554
No 164
>PHA03132 thymidine kinase; Provisional
Probab=23.84 E-value=78 Score=30.82 Aligned_cols=22 Identities=14% Similarity=0.308 Sum_probs=19.7
Q ss_pred CCeEEEEECCHHHHHHHHHhhc
Q 027528 53 MNMKIFVDTDADVRLARRIRRD 74 (222)
Q Consensus 53 ~D~~Ifvd~d~d~rl~Rri~RD 74 (222)
-|+.||++++.++.+.|.-.|+
T Consensus 402 PDLiIyLdv~pe~alkRIkkRg 423 (580)
T PHA03132 402 GDVIVLLKLNSEENLRRVKKRG 423 (580)
T ss_pred CCEEEEEeCCHHHHHHHHHhcC
Confidence 5899999999999999977774
No 165
>TIGR03708 poly_P_AMP_trns polyphosphate:AMP phosphotransferase. Members of this protein family contain a domain duplication. The characterized member from Acinetobacter johnsonii is polyphosphate:AMP phosphotransferase (PAP), which can transfer the terminal phosphate from poly(P) to AMP, yielding ADP. In the opposite direction, this enzyme can synthesize poly(P). Each domain of this protein family is homologous to polyphosphate kinase, an enzyme that can run in the forward direction to extend a polyphosphate chain with a new terminal phosphate from ATP, or in reverse to make ATP (or GTP) from ADP (or GDP).
Probab=23.50 E-value=4.2e+02 Score=25.28 Aligned_cols=77 Identities=16% Similarity=0.190 Sum_probs=46.8
Q ss_pred eEEEEECCHHHHHHHHHhhc---ccccCCCHHHHH--HHHHhccccchhhhccccC-CCcc-EEEcCCCCchhhHHHHHH
Q 027528 55 MKIFVDTDADVRLARRIRRD---TVEKGRDIATVL--DQYSKFVKPAFDDFILPTK-KYAD-IIIPRGGDNHVAIDLIVQ 127 (222)
Q Consensus 55 ~~Ifvd~d~d~rl~Rri~RD---~~~rg~~~~~~~--~~~~~~~~p~~~~~i~p~~-~~AD-lvi~~~~~~~~~~~~~~~ 127 (222)
+|+|++.+.+....|...|- .+....++++.. +.|.. ...++++.+.-|. .+|= .||+ +++-..+==.+++
T Consensus 406 vKf~LhIsk~EQ~~R~~~r~~~p~k~WK~t~~D~~~r~~w~~-Y~~a~~~ml~~T~t~~APW~vI~-a~dK~~ar~~v~~ 483 (493)
T TIGR03708 406 VKFWLHIDKEEQLRRFEERENTPFKRYKITDEDWRNREKWDA-YEDAVNDMIDRTSTIIAPWTLVE-ANDKRYARIKVLR 483 (493)
T ss_pred EEEEEEcCHHHHHHHHHHHhcCCccCCcCCHHHHHHHHhHHH-HHHHHHHHHHhcCCCCCCeEEEe-CCChHHHHHHHHH
Confidence 99999999999999988775 233456877775 33554 3456666666654 4555 4455 4343333333444
Q ss_pred HHHHHh
Q 027528 128 HIRTKL 133 (222)
Q Consensus 128 ~i~~~l 133 (222)
.|.+.|
T Consensus 484 ~l~~~l 489 (493)
T TIGR03708 484 TVCDAI 489 (493)
T ss_pred HHHHHH
Confidence 444433
No 166
>PF14038 YqzE: YqzE-like protein
Probab=23.14 E-value=46 Score=21.88 Aligned_cols=17 Identities=29% Similarity=0.520 Sum_probs=15.2
Q ss_pred EEECCHHHHHHHHHhhc
Q 027528 58 FVDTDADVRLARRIRRD 74 (222)
Q Consensus 58 fvd~d~d~rl~Rri~RD 74 (222)
|+|+|.+.|..++..|-
T Consensus 16 YmdtPkeERk~~k~~rK 32 (54)
T PF14038_consen 16 YMDTPKEERKERKEERK 32 (54)
T ss_pred HhhCCHHHHHHHHHHHH
Confidence 78999999999988874
No 167
>PRK12436 UDP-N-acetylenolpyruvoylglucosamine reductase; Provisional
Probab=22.88 E-value=1e+02 Score=27.28 Aligned_cols=45 Identities=9% Similarity=0.100 Sum_probs=36.1
Q ss_pred cCCCccEEEcCCCCchhhHHHHHHHHHHHhccCCccccCCceeee
Q 027528 104 TKKYADIIIPRGGDNHVAIDLIVQHIRTKLGQHDLCKIYPNLYVI 148 (222)
Q Consensus 104 ~~~~ADlvi~~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~v~vl 148 (222)
..++|.++|+.+..+.-.+-.+++++++...++..-.+...|.++
T Consensus 256 S~~HanfivN~g~ata~di~~Li~~v~~~V~~~~gi~Le~Ev~~~ 300 (305)
T PRK12436 256 SLKHAGFMVNVDNGTAQDYIDLIHFVQKTVEEKFGVKLEREVRII 300 (305)
T ss_pred ccccccEEEECCCCCHHHHHHHHHHHHHHHHHHHCCeeeEeeEEe
Confidence 368999999988777778888999999998877766666666665
No 168
>PRK14653 UDP-N-acetylenolpyruvoylglucosamine reductase; Provisional
Probab=22.77 E-value=1e+02 Score=27.25 Aligned_cols=43 Identities=12% Similarity=0.161 Sum_probs=32.3
Q ss_pred cCCCccEEEcCCCCchhhHHHHHHHHHHHhccCCccccCCcee
Q 027528 104 TKKYADIIIPRGGDNHVAIDLIVQHIRTKLGQHDLCKIYPNLY 146 (222)
Q Consensus 104 ~~~~ADlvi~~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~v~ 146 (222)
..++|.++|+.+..+.-.+-.+++++++...++..-.+...|.
T Consensus 253 S~kHanfiVN~g~Ata~Dv~~Li~~v~~~V~~~~Gi~Le~Ev~ 295 (297)
T PRK14653 253 SEKHAGFIINYNNAKAEDVLKLIEYVKDKIYENYNVELETEIE 295 (297)
T ss_pred ccccCcEEEECCCCCHHHHHHHHHHHHHHHHHHHCCeeeeeeE
Confidence 4689999999887777777788999998887665555444443
No 169
>COG2326 Uncharacterized conserved protein [Function unknown]
Probab=22.51 E-value=5e+02 Score=22.75 Aligned_cols=99 Identities=18% Similarity=0.313 Sum_probs=56.2
Q ss_pred cEEEEeccccCCChh-----hhc------------cCCeEEEEECCHHHHHHHHHhhccc---ccCCCHHHHH--HHHHh
Q 027528 34 DVILLEGILVFHDSR-----VRE------------LMNMKIFVDTDADVRLARRIRRDTV---EKGRDIATVL--DQYSK 91 (222)
Q Consensus 34 ~vvIvEGi~~l~~~~-----l~~------------~~D~~Ifvd~d~d~rl~Rri~RD~~---~rg~~~~~~~--~~~~~ 91 (222)
+=+.||=+++++.++ +++ ..=+|.|++++.+..+.|...|-.- ...-|+.++. .+|..
T Consensus 143 nr~gVeRVmGfct~~q~~rfl~eip~FE~mL~~~Gi~l~Kfwl~Is~eeQ~~RF~~R~~dP~K~WKlSp~D~~~r~~Wdd 222 (270)
T COG2326 143 NRAGVERVMGFCTPKQYKRFLREIPEFERMLVESGIILVKFWLSISREEQLERFLERRNDPLKQWKLSPMDLESRDRWDD 222 (270)
T ss_pred cccCeeeccccCCHHHHHHHHHHhhHHHHHHHhCCeEEEEEEEeCCHHHHHHHHHHHhcCHHhccCCCHHHHHHHHhHHH
Confidence 334578888888763 111 2228999999999999999877421 2345777765 44665
Q ss_pred ccccchhhhc-cccCCCcc-EEEcCCCCchhhHHHHHHHHHHHhc
Q 027528 92 FVKPAFDDFI-LPTKKYAD-IIIPRGGDNHVAIDLIVQHIRTKLG 134 (222)
Q Consensus 92 ~~~p~~~~~i-~p~~~~AD-lvi~~~~~~~~~~~~~~~~i~~~l~ 134 (222)
... ++++.+ ...-..|= .||+.+ +-..+==.++.||...|.
T Consensus 223 Yt~-A~~em~~~T~T~~APW~vV~ad-dKk~aRlnvi~~il~~l~ 265 (270)
T COG2326 223 YTK-AKDEMFARTSTPEAPWYVVPAD-DKKRARLNVIRHLLSALP 265 (270)
T ss_pred HHH-HHHHHHhccCCCCCCeEEEeCC-cHHHHHHHHHHHHHHhcc
Confidence 433 344444 33344444 455533 333332244566655553
No 170
>PF05678 VQ: VQ motif; InterPro: IPR008889 This short motif is found in a variety of plant proteins. These proteins vary greatly in length and are mostly composed of low complexity regions. They all conserve a short motif FXhVQChTG, where X is any amino acid and h is a hydrophobic amino acid. The function of this motif is uncertain, however one protein in this family has been found to bind the SigA sigma factor Q9LDH1 from SWISSPROT. It would seem plausible that this motif is needed for this activity and that this whole family might be involved in modulating plastid sigma factors.
Probab=22.34 E-value=53 Score=18.97 Aligned_cols=15 Identities=27% Similarity=0.352 Sum_probs=12.9
Q ss_pred CCCchhhhhhHHHHH
Q 027528 165 QTTKHDFVFYSDRLI 179 (222)
Q Consensus 165 ~t~~~~Fr~~~~~i~ 179 (222)
+|++.+||..+.+|+
T Consensus 9 ~~d~~~Fr~lVQ~LT 23 (31)
T PF05678_consen 9 HTDPSNFRALVQRLT 23 (31)
T ss_pred EeCHHHHHHHHHHhH
Confidence 588999999998885
No 171
>PF08236 SRI: SRI (Set2 Rpb1 interacting) domain; InterPro: IPR013257 The SRI (Set2 Rpb1 interacting) domain mediates RNA polymerase II interaction and couples histone H3 K36 methylation with transcript elongation []. This domain is conserved from yeast to humans. Members of this family form a compact, closed three-helix bundle, with an up-down-up topology. The first and second helices are antiparallel to each other and are of similar length; the third helix, which is packed across helices alpha1 and alpha2 is slightly shorter, consisting of only 15 amino acids. Most conserved hydrophobic residues are largely buried in the interior of the structure and form an extensive and contiguous hydrophobic core that stabilises the packing of the three-helix bundle. This domain mediates RNA polymerase II interaction and couples histone H3 K36 methylation with transcript elongation []. ; GO: 0018024 histone-lysine N-methyltransferase activity, 0006355 regulation of transcription, DNA-dependent, 0034968 histone lysine methylation, 0005694 chromosome; PDB: 2A7O_A 2C5Z_A.
Probab=21.97 E-value=98 Score=22.10 Aligned_cols=37 Identities=22% Similarity=0.312 Sum_probs=28.3
Q ss_pred chhhhhhhhhhhcCCCCchhhhhhHHHHHHHHHHHHhC
Q 027528 151 TFQIRGMHTLIRDSQTTKHDFVFYSDRLIRLVVEHGLG 188 (222)
Q Consensus 151 ~p~~~~~lt~lRd~~t~~~~Fr~~~~~i~~lL~~ea~~ 188 (222)
.+.|.+.|+.-|+. ++..+|...+.+|+..|+..=++
T Consensus 14 ~~~V~~~l~~y~~~-~~~ddfK~~ar~lt~~l~~KE~K 50 (88)
T PF08236_consen 14 AKHVVNLLNKYRKK-LSKDDFKHLARKLTHKLVEKELK 50 (88)
T ss_dssp HHHHHHHHCTTTTT---HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcccc-CCHHHHHHHHHHHHHHHHHHHHh
Confidence 45677778888866 99999999999999999875444
No 172
>PRK13905 murB UDP-N-acetylenolpyruvoylglucosamine reductase; Provisional
Probab=21.91 E-value=1.1e+02 Score=26.73 Aligned_cols=45 Identities=20% Similarity=0.358 Sum_probs=34.6
Q ss_pred cCCCccEEEcCCCCchhhHHHHHHHHHHHhccCCccccCCceeee
Q 027528 104 TKKYADIIIPRGGDNHVAIDLIVQHIRTKLGQHDLCKIYPNLYVI 148 (222)
Q Consensus 104 ~~~~ADlvi~~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~v~vl 148 (222)
..++|.++|+.+..+.-.+-.+++++++...++..-.+...+.++
T Consensus 251 s~~hanfivN~g~at~~dv~~L~~~v~~~V~~~~gi~Le~Ev~~~ 295 (298)
T PRK13905 251 SEKHANFIINTGGATAADIEDLIEHVQKTVKEKFGVELEWEVRII 295 (298)
T ss_pred ccccCcEEEECCCCCHHHHHHHHHHHHHHHHHHHCCeeeEeeEEe
Confidence 468999999988777777888999999988877665555555554
No 173
>PRK14652 UDP-N-acetylenolpyruvoylglucosamine reductase; Provisional
Probab=21.85 E-value=1.1e+02 Score=27.12 Aligned_cols=46 Identities=11% Similarity=0.148 Sum_probs=36.1
Q ss_pred cCCCccEEEcCCCCchhhHHHHHHHHHHHhccCCccccCCceeeec
Q 027528 104 TKKYADIIIPRGGDNHVAIDLIVQHIRTKLGQHDLCKIYPNLYVIH 149 (222)
Q Consensus 104 ~~~~ADlvi~~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~v~vl~ 149 (222)
..++|.++|+.+..+.-.+-.+++++++...++..-.+...+.++.
T Consensus 254 S~kHanfivN~g~ata~di~~Li~~v~~~V~~~~gi~Le~Ev~~~g 299 (302)
T PRK14652 254 SPVHANFVTNLGGATARDVLALVRLARARVKERFGIALETEVRLLG 299 (302)
T ss_pred cccccCEEEECCCCCHHHHHHHHHHHHHHHHHHHCCeeeEeeEEec
Confidence 3689999999887777777889999999988776666666666663
No 174
>PRK14650 UDP-N-acetylenolpyruvoylglucosamine reductase; Provisional
Probab=21.58 E-value=1.2e+02 Score=27.05 Aligned_cols=45 Identities=11% Similarity=0.175 Sum_probs=35.4
Q ss_pred cCCCccEEEcCCCCchhhHHHHHHHHHHHhccCCccccCCceeee
Q 027528 104 TKKYADIIIPRGGDNHVAIDLIVQHIRTKLGQHDLCKIYPNLYVI 148 (222)
Q Consensus 104 ~~~~ADlvi~~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~v~vl 148 (222)
..++|.++|+.+..+.-.+-.+++++++...++..-.+...|.++
T Consensus 255 S~kHanfIVN~G~Ata~Dil~Li~~v~~~V~~~~GI~Le~Ev~~i 299 (302)
T PRK14650 255 SHYHGNFIININNATSKDIKTLIEKVKTEVQIKTGFLLEEEVLYI 299 (302)
T ss_pred ccccccEEEECCCCCHHHHHHHHHHHHHHHHHHHCCeeeEeeEEE
Confidence 368999999988777777888999999998877766665556555
No 175
>TIGR00179 murB UDP-N-acetylenolpyruvoylglucosamine reductase. This model describes MurB, UDP-N-acetylenolpyruvoylglucosamine reductase, which is also called UDP-N-acetylmuramate dehydrogenase. It is part of the pathway for the biosynthesis of the UDP-N-acetylmuramoyl-pentapeptide that is a precursor of bacterial peptidoglycan.
Probab=20.94 E-value=1.1e+02 Score=26.66 Aligned_cols=44 Identities=11% Similarity=0.295 Sum_probs=32.8
Q ss_pred cCCCccEEEcCCCCchhhHHHHHHHHHHHhccCCccccCCceee
Q 027528 104 TKKYADIIIPRGGDNHVAIDLIVQHIRTKLGQHDLCKIYPNLYV 147 (222)
Q Consensus 104 ~~~~ADlvi~~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~v~v 147 (222)
..++|.++|+.+..+.-.+-.+++++++...++..-.+...+.+
T Consensus 239 S~~HanfivN~g~At~~di~~Li~~v~~~V~~~~gi~Le~Ev~~ 282 (284)
T TIGR00179 239 SKQHANFLVNIDNAKSEDVLDLIEHVKAEVGEKYGILLEPEVKI 282 (284)
T ss_pred ccccCcEEEECCCCCHHHHHHHHHHHHHHHHHHHCCeeeEEeEE
Confidence 36899999998877777777889999988876665555444443
Done!