Query 027528
Match_columns 222
No_of_seqs 235 out of 1843
Neff 7.3
Searched_HMMs 29240
Date Mon Mar 25 19:05:13 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/027528.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/027528hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1bd3_D Uprtase, uracil phospho 99.9 3.4E-22 1.2E-26 169.6 8.3 85 138-222 28-112 (243)
2 3dmp_A Uracil phosphoribosyltr 99.9 7.2E-22 2.5E-26 165.0 9.6 80 141-222 7-87 (217)
3 1xtt_A Probable uracil phospho 99.8 4E-21 1.4E-25 160.5 9.6 78 144-222 2-81 (216)
4 1v9s_A Uracil phosphoribosyltr 99.8 4E-21 1.4E-25 159.7 8.8 77 144-222 2-79 (208)
5 2ehj_A Uracil phosphoribosyltr 99.8 3.4E-21 1.2E-25 160.1 7.6 78 143-222 1-79 (208)
6 1o5o_A Uracil phosphoribosyltr 99.8 1.5E-20 5.2E-25 157.4 9.6 79 142-222 13-92 (221)
7 2e55_A Uracil phosphoribosyltr 99.8 1.9E-20 6.5E-25 155.6 8.4 76 145-222 2-78 (208)
8 3tqc_A Pantothenate kinase; bi 99.8 1.1E-20 3.7E-25 166.6 6.3 119 2-120 165-313 (321)
9 1i5e_A Uracil phosphoribosyltr 99.8 4.5E-20 1.5E-24 153.6 8.2 79 142-222 1-80 (209)
10 2ga8_A Hypothetical 39.9 kDa p 99.7 4.1E-18 1.4E-22 151.7 3.9 107 8-117 235-353 (359)
11 1sq5_A Pantothenate kinase; P- 99.7 9.1E-17 3.1E-21 140.2 7.7 117 3-119 154-300 (308)
12 1uj2_A Uridine-cytidine kinase 99.6 3.8E-16 1.3E-20 132.0 9.3 133 2-135 101-233 (252)
13 3asz_A Uridine kinase; cytidin 99.6 9.4E-16 3.2E-20 125.4 11.2 131 4-135 77-207 (211)
14 3c8u_A Fructokinase; YP_612366 99.6 9.5E-16 3.2E-20 125.9 6.7 109 3-114 94-207 (208)
15 2jeo_A Uridine-cytidine kinase 99.6 7.6E-15 2.6E-19 123.5 12.1 130 4-135 106-235 (245)
16 1a7j_A Phosphoribulokinase; tr 99.6 1.5E-15 5.2E-20 131.7 5.7 112 3-115 86-215 (290)
17 3aez_A Pantothenate kinase; tr 99.5 7.3E-15 2.5E-19 128.8 7.8 118 3-120 164-304 (312)
18 1odf_A YGR205W, hypothetical 3 99.4 3E-14 1E-18 123.6 4.0 115 2-118 112-279 (290)
19 1rz3_A Hypothetical protein rb 99.4 4.3E-14 1.5E-18 115.5 3.3 104 2-115 95-200 (201)
20 2f6r_A COA synthase, bifunctio 98.6 4.2E-07 1.4E-11 77.8 11.1 74 32-116 180-253 (281)
21 2qt1_A Nicotinamide riboside k 98.5 9E-08 3.1E-12 77.6 4.7 94 31-133 108-203 (207)
22 4i1u_A Dephospho-COA kinase; s 98.3 3E-06 1E-10 70.0 10.1 74 32-115 111-184 (210)
23 1jjv_A Dephospho-COA kinase; P 98.3 1.7E-06 5.8E-11 69.8 8.0 90 33-133 105-194 (206)
24 1q3t_A Cytidylate kinase; nucl 98.2 9.3E-06 3.2E-10 67.2 9.7 82 32-116 134-218 (236)
25 2if2_A Dephospho-COA kinase; a 98.1 1.2E-05 4E-10 64.6 8.3 85 34-134 106-190 (204)
26 3ake_A Cytidylate kinase; CMP 98.0 2.4E-05 8.3E-10 62.5 9.0 73 34-116 119-192 (208)
27 1uf9_A TT1252 protein; P-loop, 98.0 2.1E-05 7.2E-10 62.7 7.7 88 32-134 105-192 (203)
28 1cke_A CK, MSSA, protein (cyti 98.0 3.7E-05 1.3E-09 62.4 9.4 81 32-115 122-205 (227)
29 3lw7_A Adenylate kinase relate 97.9 1.6E-05 5.3E-10 61.3 5.8 82 31-116 76-161 (179)
30 1vht_A Dephospho-COA kinase; s 97.9 0.0001 3.6E-09 59.7 10.2 89 33-132 107-195 (218)
31 4e22_A Cytidylate kinase; P-lo 97.8 0.00011 3.7E-09 61.6 10.1 99 32-132 144-245 (252)
32 2grj_A Dephospho-COA kinase; T 97.8 7.9E-05 2.7E-09 60.3 8.5 61 33-116 111-171 (192)
33 3d3q_A TRNA delta(2)-isopenten 97.7 1.8E-06 6.3E-11 76.2 -2.2 93 4-104 69-164 (340)
34 2h92_A Cytidylate kinase; ross 97.7 0.00013 4.4E-09 59.1 8.6 97 32-134 117-216 (219)
35 3r20_A Cytidylate kinase; stru 97.5 0.00031 1.1E-08 58.7 8.5 96 34-134 129-226 (233)
36 2vp4_A Deoxynucleoside kinase; 97.4 1E-06 3.6E-11 72.9 -7.8 104 4-115 101-208 (230)
37 2pt5_A Shikimate kinase, SK; a 96.5 0.0019 6.6E-08 49.6 3.8 93 32-139 69-167 (168)
38 2jaq_A Deoxyguanosine kinase; 96.4 0.0026 8.9E-08 50.1 4.3 74 51-133 123-198 (205)
39 3vaa_A Shikimate kinase, SK; s 96.4 0.025 8.6E-07 44.9 9.9 94 32-133 94-197 (199)
40 1tev_A UMP-CMP kinase; ploop, 96.2 0.0088 3E-07 46.6 6.3 94 32-133 85-192 (196)
41 2bwj_A Adenylate kinase 5; pho 96.2 0.0059 2E-07 47.9 5.1 44 32-75 90-138 (199)
42 1qf9_A UMP/CMP kinase, protein 96.1 0.018 6E-07 44.7 7.7 93 32-133 82-189 (194)
43 2iyv_A Shikimate kinase, SK; t 96.1 0.012 4E-07 45.9 6.5 93 33-135 72-168 (184)
44 3t61_A Gluconokinase; PSI-biol 96.1 0.033 1.1E-06 44.1 9.1 88 32-129 85-177 (202)
45 1ukz_A Uridylate kinase; trans 95.7 0.023 7.9E-07 44.9 6.6 64 34-98 97-171 (203)
46 2qor_A Guanylate kinase; phosp 95.5 0.027 9.3E-07 44.9 6.5 92 31-133 101-198 (204)
47 3trf_A Shikimate kinase, SK; a 95.3 0.024 8.2E-07 44.0 5.4 93 32-134 74-173 (185)
48 3fdi_A Uncharacterized protein 95.2 0.021 7.2E-07 46.0 4.9 74 54-134 118-197 (201)
49 1e6c_A Shikimate kinase; phosp 95.1 0.035 1.2E-06 42.4 5.6 93 32-134 70-169 (173)
50 3nwj_A ATSK2; P loop, shikimat 95.0 0.062 2.1E-06 44.9 7.2 41 33-73 120-162 (250)
51 1kht_A Adenylate kinase; phosp 94.4 0.12 4.2E-06 39.8 7.2 42 32-73 83-135 (192)
52 2pbr_A DTMP kinase, thymidylat 94.3 0.064 2.2E-06 41.5 5.4 68 52-133 122-189 (195)
53 1y63_A LMAJ004144AAA protein; 94.2 0.19 6.6E-06 39.1 8.2 36 36-73 86-121 (184)
54 3hdt_A Putative kinase; struct 94.2 0.16 5.5E-06 41.6 7.8 73 54-133 138-216 (223)
55 3kb2_A SPBC2 prophage-derived 94.1 0.27 9.1E-06 37.1 8.4 70 53-133 95-164 (173)
56 2ocp_A DGK, deoxyguanosine kin 94.0 0.092 3.1E-06 42.8 6.1 77 52-133 149-238 (241)
57 1p5z_B DCK, deoxycytidine kina 94.0 0.39 1.3E-05 39.6 9.9 23 52-74 174-196 (263)
58 2c95_A Adenylate kinase 1; tra 93.8 0.14 4.6E-06 39.8 6.4 43 32-75 87-135 (196)
59 2plr_A DTMP kinase, probable t 93.7 0.3 1E-05 38.1 8.4 60 53-116 122-192 (213)
60 3a4m_A L-seryl-tRNA(SEC) kinas 93.5 1.1 3.9E-05 36.8 12.1 89 34-135 73-173 (260)
61 1zak_A Adenylate kinase; ATP:A 93.5 0.16 5.5E-06 40.6 6.6 22 53-74 109-130 (222)
62 1zuh_A Shikimate kinase; alpha 93.4 0.05 1.7E-06 41.6 3.2 67 53-131 97-165 (168)
63 2rhm_A Putative kinase; P-loop 93.3 0.11 3.7E-06 40.3 5.0 98 32-134 76-187 (193)
64 2cdn_A Adenylate kinase; phosp 93.3 0.25 8.7E-06 38.8 7.3 71 52-133 126-199 (201)
65 3iij_A Coilin-interacting nucl 93.3 0.41 1.4E-05 36.8 8.3 23 52-74 96-118 (180)
66 2j41_A Guanylate kinase; GMP, 93.0 0.25 8.7E-06 38.5 6.8 87 32-134 96-185 (207)
67 1nks_A Adenylate kinase; therm 92.9 0.32 1.1E-05 37.4 7.2 42 31-72 83-135 (194)
68 2z0h_A DTMP kinase, thymidylat 92.7 0.12 4.2E-06 40.1 4.6 70 52-134 121-190 (197)
69 4eun_A Thermoresistant glucoki 92.7 0.32 1.1E-05 38.3 7.1 67 55-135 127-193 (200)
70 4tmk_A Protein (thymidylate ki 92.5 0.17 5.9E-06 41.1 5.3 77 52-133 132-208 (213)
71 3a00_A Guanylate kinase, GMP k 92.4 0.043 1.5E-06 43.1 1.5 85 32-127 91-180 (186)
72 4hlc_A DTMP kinase, thymidylat 92.3 0.4 1.4E-05 38.6 7.3 79 53-134 125-203 (205)
73 3lv8_A DTMP kinase, thymidylat 92.2 0.11 3.9E-06 43.0 3.9 78 52-134 154-231 (236)
74 4eaq_A DTMP kinase, thymidylat 91.5 0.52 1.8E-05 38.4 7.2 79 52-133 148-226 (229)
75 3tr0_A Guanylate kinase, GMP k 91.3 0.37 1.3E-05 37.6 5.9 86 32-133 96-184 (205)
76 1knq_A Gluconate kinase; ALFA/ 91.2 1.1 3.8E-05 34.0 8.5 66 54-134 104-172 (175)
77 3ld9_A DTMP kinase, thymidylat 89.9 0.17 5.7E-06 41.7 2.7 74 52-134 145-218 (223)
78 3fb4_A Adenylate kinase; psych 89.9 0.39 1.3E-05 38.0 4.9 41 33-73 78-127 (216)
79 1kag_A SKI, shikimate kinase I 89.8 0.32 1.1E-05 37.0 4.2 73 51-134 95-171 (173)
80 1via_A Shikimate kinase; struc 89.7 0.5 1.7E-05 36.1 5.2 90 33-134 74-165 (175)
81 3dl0_A Adenylate kinase; phosp 89.6 0.38 1.3E-05 38.1 4.7 21 53-73 107-127 (216)
82 2vli_A Antibiotic resistance p 88.5 0.97 3.3E-05 34.4 6.2 42 33-74 77-126 (183)
83 1nn5_A Similar to deoxythymidy 88.4 1.1 3.9E-05 34.9 6.6 21 52-72 129-149 (215)
84 4edh_A DTMP kinase, thymidylat 88.0 1.2 4.2E-05 35.9 6.7 78 51-133 130-208 (213)
85 3hjn_A DTMP kinase, thymidylat 86.3 0.67 2.3E-05 36.9 4.1 69 53-134 122-190 (197)
86 2xb4_A Adenylate kinase; ATP-b 84.9 2.6 9E-05 33.6 7.1 42 33-74 77-127 (223)
87 3tlx_A Adenylate kinase 2; str 83.8 2.3 7.7E-05 34.6 6.3 41 33-74 107-157 (243)
88 2yvu_A Probable adenylyl-sulfa 83.4 4.4 0.00015 31.0 7.6 39 32-70 84-130 (186)
89 2wwf_A Thymidilate kinase, put 83.4 0.75 2.6E-05 36.0 3.1 69 52-134 130-198 (212)
90 3v9p_A DTMP kinase, thymidylat 81.5 0.34 1.2E-05 39.8 0.5 74 52-133 151-224 (227)
91 1ltq_A Polynucleotide kinase; 81.2 2.6 8.8E-05 35.0 5.8 60 31-92 76-143 (301)
92 1qhx_A CPT, protein (chloramph 80.9 6.9 0.00024 29.3 7.8 42 33-74 86-134 (178)
93 2pez_A Bifunctional 3'-phospho 79.3 2.1 7E-05 32.7 4.3 21 52-72 104-124 (179)
94 3ch4_B Pmkase, phosphomevalona 78.5 2.9 9.9E-05 33.7 5.0 89 32-136 102-197 (202)
95 3cm0_A Adenylate kinase; ATP-b 77.4 6.6 0.00023 29.7 6.7 22 53-74 106-127 (186)
96 1gtv_A TMK, thymidylate kinase 75.4 0.2 6.9E-06 39.4 -2.7 24 52-75 132-155 (214)
97 1ak2_A Adenylate kinase isoenz 74.3 9.5 0.00033 30.3 7.2 23 52-74 122-144 (233)
98 1zd8_A GTP:AMP phosphotransfer 73.6 2.3 7.8E-05 33.9 3.2 42 33-74 84-129 (227)
99 2gks_A Bifunctional SAT/APS ki 73.5 2.3 8E-05 39.3 3.6 39 32-70 443-487 (546)
100 2v54_A DTMP kinase, thymidylat 73.1 2.7 9.1E-05 32.5 3.4 17 52-68 121-137 (204)
101 1ly1_A Polynucleotide kinase; 72.6 2.4 8.4E-05 31.8 3.0 59 31-91 76-142 (181)
102 1kgd_A CASK, peripheral plasma 71.8 1.2 4.1E-05 34.3 1.1 81 32-130 95-177 (180)
103 1m7g_A Adenylylsulfate kinase; 70.2 5.1 0.00017 31.4 4.5 16 54-69 133-148 (211)
104 3tmk_A Thymidylate kinase; pho 69.1 1.7 5.7E-05 35.3 1.4 76 52-134 125-205 (216)
105 3czq_A Putative polyphosphate 67.2 9.1 0.00031 32.8 5.7 83 52-135 190-278 (304)
106 1dek_A Deoxynucleoside monopho 66.1 19 0.00065 29.5 7.3 24 52-75 167-190 (241)
107 1aky_A Adenylate kinase; ATP:A 65.7 25 0.00087 27.3 7.9 23 52-74 111-133 (220)
108 1p6x_A Thymidine kinase; P-loo 64.3 1.9 6.5E-05 37.5 0.8 21 53-73 158-178 (334)
109 3uie_A Adenylyl-sulfate kinase 59.9 25 0.00087 27.0 6.8 39 32-70 96-140 (200)
110 1e4v_A Adenylate kinase; trans 59.1 13 0.00044 29.0 4.9 24 52-75 102-125 (214)
111 3lnc_A Guanylate kinase, GMP k 58.9 7.9 0.00027 30.7 3.7 65 55-134 142-207 (231)
112 1ex7_A Guanylate kinase; subst 58.2 28 0.00097 27.1 6.7 54 32-90 91-148 (186)
113 3be4_A Adenylate kinase; malar 55.4 41 0.0014 26.1 7.4 23 52-74 111-133 (217)
114 1x6v_B Bifunctional 3'-phospho 49.5 32 0.0011 32.3 6.6 68 54-131 153-222 (630)
115 3rhf_A Putative polyphosphate 41.8 60 0.0021 27.4 6.5 83 52-136 179-268 (289)
116 1m8p_A Sulfate adenylyltransfe 41.3 48 0.0016 30.6 6.3 16 55-70 498-513 (573)
117 3tau_A Guanylate kinase, GMP k 41.2 12 0.0004 29.3 1.9 86 32-133 98-186 (208)
118 3czp_A Putative polyphosphate 37.9 20 0.00068 32.8 3.1 80 52-133 404-494 (500)
119 1z6g_A Guanylate kinase; struc 36.1 98 0.0033 24.1 6.8 68 55-131 139-207 (218)
120 3czp_A Putative polyphosphate 35.4 15 0.00052 33.6 1.9 81 52-134 147-238 (500)
121 3umf_A Adenylate kinase; rossm 33.7 89 0.003 24.9 6.1 94 33-135 108-213 (217)
122 3sr0_A Adenylate kinase; phosp 31.9 1.6E+02 0.0054 22.9 7.3 22 53-74 104-125 (206)
123 1osn_A Thymidine kinase, VZV-T 28.1 10 0.00034 33.0 -0.6 21 53-73 167-187 (341)
124 3gmt_A Adenylate kinase; ssgci 25.9 43 0.0015 27.2 2.9 42 34-75 87-133 (230)
125 3cr8_A Sulfate adenylyltranfer 25.0 95 0.0033 28.5 5.4 67 55-130 471-538 (552)
126 1e2k_A Thymidine kinase; trans 24.7 23 0.00079 30.5 1.1 20 54-73 156-175 (331)
127 1s96_A Guanylate kinase, GMP k 24.6 2.5E+02 0.0086 21.9 7.5 82 32-129 107-195 (219)
128 1of1_A Thymidine kinase; trans 20.4 32 0.0011 30.3 1.1 20 54-73 201-220 (376)
129 2ze6_A Isopentenyl transferase 20.1 52 0.0018 26.5 2.3 20 55-74 119-139 (253)
No 1
>1bd3_D Uprtase, uracil phosphoribosyltransferase; glycosyltransferase; 1.93A {Toxoplasma gondii} SCOP: c.61.1.1 PDB: 1bd4_D 1jlr_A* 1jls_B* 1upf_D 1upu_D*
Probab=99.86 E-value=3.4e-22 Score=169.60 Aligned_cols=85 Identities=47% Similarity=0.906 Sum_probs=80.5
Q ss_pred ccccCCceeeeccchhhhhhhhhhhcCCCCchhhhhhHHHHHHHHHHHHhCCCCCeeeEEeCCCCceeEeeeecCcEeEE
Q 027528 138 LCKIYPNLYVIHSTFQIRGMHTLIRDSQTTKHDFVFYSDRLIRLVVEHGLGHLPFTEKQVITPTGAVYTGVDFCKRLCGV 217 (222)
Q Consensus 138 ~~~~~~~v~vl~~~p~~~~~lt~lRd~~t~~~~Fr~~~~~i~~lL~~ea~~~l~~~~~~V~TP~~~~~~g~~~~~~i~~V 217 (222)
.+..+.||+++.+||+++|++|+|||++|++.+||++++||+++|+|||+++||+++++|+||+|..++|..+++++|+|
T Consensus 28 ~~~~~~~v~~~~~hp~i~~~lt~lRd~~t~~~~Fr~~~~rl~~ll~yEa~~~lp~~~~~v~TP~g~~~~g~~~~~~l~~V 107 (243)
T 1bd3_D 28 IITRFPNVVLMKQTAQLRAMMTIIRDKETPKEEFVFYADRLIRLLIEEALNELPFQKKEVTTPLDVSYHGVSFYSKICGV 107 (243)
T ss_dssp HHHHCTTEEECCCCHHHHHHHHHHHCTTCCHHHHHHHHHHHHHHHHHHHHTTSCEEEEEEECTTSCEEEEEEECCCEEEE
T ss_pred cccCCCcEEEecCCHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHhcCCceeEEEECCCcceEeeeeccCcEEEE
Confidence 45677899999889999999999999999999999999999999999999999999999999999778999889999999
Q ss_pred EeeCC
Q 027528 218 SVIRR 222 (222)
Q Consensus 218 ~IlRA 222 (222)
|||||
T Consensus 108 ~ILRa 112 (243)
T 1bd3_D 108 SIVRA 112 (243)
T ss_dssp EEETT
T ss_pred EEEcc
Confidence 99997
No 2
>3dmp_A Uracil phosphoribosyltransferase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; 2.60A {Burkholderia pseudomallei} SCOP: c.61.1.1
Probab=99.86 E-value=7.2e-22 Score=165.04 Aligned_cols=80 Identities=28% Similarity=0.322 Sum_probs=76.3
Q ss_pred cCCceeeeccchhhhhhhhhhhcCCCCchhhhhhHHHHHHHHHHHHhCCCCCeeeEEeCCCCceeEeeeec-CcEeEEEe
Q 027528 141 IYPNLYVIHSTFQIRGMHTLIRDSQTTKHDFVFYSDRLIRLVVEHGLGHLPFTEKQVITPTGAVYTGVDFC-KRLCGVSV 219 (222)
Q Consensus 141 ~~~~v~vl~~~p~~~~~lt~lRd~~t~~~~Fr~~~~~i~~lL~~ea~~~l~~~~~~V~TP~~~~~~g~~~~-~~i~~V~I 219 (222)
.++||++++ ||+++|++|+|||++|++.+||++++||+++|+|||+++||+++.+|+||+| .++|.+++ +++|+|||
T Consensus 7 ~~~~v~v~~-hp~i~~~lt~lRd~~t~~~~Fr~~~~rl~~lL~yEa~~~lp~~~~~V~TP~g-~~~g~~~~~~~i~~V~I 84 (217)
T 3dmp_A 7 RFPNLFILD-HPLIQHKLTHMRDKDTSTRTFRELLREITLLMGYEITRNLPITTKRVETPLV-EIDAPVIAGKKLAIVPV 84 (217)
T ss_dssp TCTTEEEEC-CHHHHHHHHHHHCTTSCHHHHHHHHHHHHHHHHHHHTTTCCEEEEEEECSSC-EEEEEEECGGGEEEEEE
T ss_pred CCCCeEecC-CHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHhcCCceeEEEECCCe-EEEEEEecCCcEEEEEe
Confidence 357899996 9999999999999999999999999999999999999999999999999999 58999997 89999999
Q ss_pred eCC
Q 027528 220 IRR 222 (222)
Q Consensus 220 lRA 222 (222)
|||
T Consensus 85 lRa 87 (217)
T 3dmp_A 85 LRA 87 (217)
T ss_dssp ETT
T ss_pred ccc
Confidence 997
No 3
>1xtt_A Probable uracil phosphoribosyltransferase; tetramer, type 1 phosphoribosyltransferase, UMP complex; HET: U5P; 1.80A {Sulfolobus solfataricus} SCOP: c.61.1.1 PDB: 1vst_A* 1xtu_A* 1xtv_A* 3g6w_A*
Probab=99.84 E-value=4e-21 Score=160.47 Aligned_cols=78 Identities=27% Similarity=0.295 Sum_probs=72.8
Q ss_pred ceeeeccchhhhhhhhhhhcCCCCchhhhhhHHHHHHHHHHHHhCCCCCeeeEEeCCCCceeEeeeec--CcEeEEEeeC
Q 027528 144 NLYVIHSTFQIRGMHTLIRDSQTTKHDFVFYSDRLIRLVVEHGLGHLPFTEKQVITPTGAVYTGVDFC--KRLCGVSVIR 221 (222)
Q Consensus 144 ~v~vl~~~p~~~~~lt~lRd~~t~~~~Fr~~~~~i~~lL~~ea~~~l~~~~~~V~TP~~~~~~g~~~~--~~i~~V~IlR 221 (222)
||++++ ||+++|++|+|||++|++.+||++++||+++|+|||+++||+++.+|+||+|..+.|..+. +++|+|||||
T Consensus 2 ~v~v~~-hp~~~~~lt~lRd~~t~~~~Fr~~~~~l~~ll~yEa~~~l~~~~~~v~TP~g~~~~~~~~~~~~~i~iV~IlR 80 (216)
T 1xtt_A 2 PLYVID-KPITLHILTQLRDKYTDQINFRKNLVRLGRILGYEISNTLDYEIVEVETPLGVKTKGVDITDLNNIVIINILR 80 (216)
T ss_dssp CEEECC-CHHHHHHHHHHHCTTCCHHHHHHHHHHHHHHHHHHHHTTSCCEEEEEECTTSCEEEEEECGGGGSEEEEEEET
T ss_pred ceEEcC-CHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHhhCCceeEEEECCCccEecceEecCCCcEEEEeecC
Confidence 799997 9999999999999999999999999999999999999999999999999999866665554 7899999999
Q ss_pred C
Q 027528 222 R 222 (222)
Q Consensus 222 A 222 (222)
|
T Consensus 81 a 81 (216)
T 1xtt_A 81 A 81 (216)
T ss_dssp T
T ss_pred C
Confidence 7
No 4
>1v9s_A Uracil phosphoribosyltransferase; pyrimidine salvage, oligomerization, structural genomics, RI structural genomics/proteomics initiative; 2.10A {Thermus thermophilus} SCOP: c.61.1.1
Probab=99.84 E-value=4e-21 Score=159.66 Aligned_cols=77 Identities=19% Similarity=0.263 Sum_probs=73.7
Q ss_pred ceeeeccchhhhhhhhhhhcCCCCchhhhhhHHHHHHHHHHHHhCCCCCeeeEEeCCCCceeEeeeec-CcEeEEEeeCC
Q 027528 144 NLYVIHSTFQIRGMHTLIRDSQTTKHDFVFYSDRLIRLVVEHGLGHLPFTEKQVITPTGAVYTGVDFC-KRLCGVSVIRR 222 (222)
Q Consensus 144 ~v~vl~~~p~~~~~lt~lRd~~t~~~~Fr~~~~~i~~lL~~ea~~~l~~~~~~V~TP~~~~~~g~~~~-~~i~~V~IlRA 222 (222)
++++++ ||+++|++|+|||++|++.+||++++||+++|+|||++++|+++.+|+||+| .++|..++ +++|+||||||
T Consensus 2 ~v~v~~-~p~i~~~lt~lRd~~t~~~~Fr~~~~~l~~ll~~ea~~~l~~~~~~v~TP~g-~~~g~~~~g~~l~~V~ILra 79 (208)
T 1v9s_A 2 RITLVD-HPLVQHKLAHLRDKRTGPKDFRELAEEVAMLMAYEAMRDLELEETTVETPIA-PARVKVLSGKKLALVAILRA 79 (208)
T ss_dssp CEEECC-CHHHHHHHHHHHSTTCCHHHHHHHHHHHHHHHHHHHTTTCCEEEEEEECSSS-EEEEEEECSSCCEEEEETTT
T ss_pred ceEEcC-CHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHccCCCeEEEEECCCc-eEEEEEecCCceEEEEeccc
Confidence 688885 9999999999999999999999999999999999999999999999999999 58999998 89999999997
No 5
>2ehj_A Uracil phosphoribosyltransferase; structural genomics; 2.80A {Escherichia coli}
Probab=99.83 E-value=3.4e-21 Score=160.07 Aligned_cols=78 Identities=12% Similarity=0.120 Sum_probs=74.0
Q ss_pred CceeeeccchhhhhhhhhhhcCCCCchhhhhhHHHHHHHHHHHHhCCCCCeeeEEeCCCCceeEeeeec-CcEeEEEeeC
Q 027528 143 PNLYVIHSTFQIRGMHTLIRDSQTTKHDFVFYSDRLIRLVVEHGLGHLPFTEKQVITPTGAVYTGVDFC-KRLCGVSVIR 221 (222)
Q Consensus 143 ~~v~vl~~~p~~~~~lt~lRd~~t~~~~Fr~~~~~i~~lL~~ea~~~l~~~~~~V~TP~~~~~~g~~~~-~~i~~V~IlR 221 (222)
+++++++ ||+++|++|+|||++|++.+||++++||+++|+|||++++|+++.+|+||+| .++|..++ +++|+|||||
T Consensus 1 ~~v~v~~-hp~i~~~lt~lRd~~t~~~~Fr~~~~~l~~ll~~ea~~~l~~~~~~v~TP~~-~~~g~~~~g~~l~~V~ILr 78 (208)
T 2ehj_A 1 KKIVEVK-HPLVKHKLGLMREQDISTKRFRELASEVGSLLTYEATADLETEKVTIEGWNG-PVEIDQIKGKKITVVPILR 78 (208)
T ss_dssp CEEEECC-CHHHHHHHHHHHCSSCCHHHHHHHHHHHHHHHHHHHTTTCCEEEEEEEETTE-EEEEEEECSSCCEEEEBTT
T ss_pred CCeEEcC-CHHHHHHHHHHHCCCCChHHHHHHHHHHHHHHHHHHHhcCCceEEEEECCCc-cEEEEEecCCceEEEEeec
Confidence 3688885 9999999999999999999999999999999999999999999999999999 58999998 8999999999
Q ss_pred C
Q 027528 222 R 222 (222)
Q Consensus 222 A 222 (222)
|
T Consensus 79 a 79 (208)
T 2ehj_A 79 A 79 (208)
T ss_dssp G
T ss_pred C
Confidence 6
No 6
>1o5o_A Uracil phosphoribosyltransferase; TM0721, structural genomic PSI, protein structure initiative, joint center for structu genomics; HET: U5P; 2.30A {Thermotoga maritima} SCOP: c.61.1.1
Probab=99.83 E-value=1.5e-20 Score=157.41 Aligned_cols=79 Identities=25% Similarity=0.296 Sum_probs=73.4
Q ss_pred CCceeeeccchhhhhhhhhhhcCCCCchhhhhhHHHHHHHHHHHHhCCCCCeeeEEeCCCCceeEeeeec-CcEeEEEee
Q 027528 142 YPNLYVIHSTFQIRGMHTLIRDSQTTKHDFVFYSDRLIRLVVEHGLGHLPFTEKQVITPTGAVYTGVDFC-KRLCGVSVI 220 (222)
Q Consensus 142 ~~~v~vl~~~p~~~~~lt~lRd~~t~~~~Fr~~~~~i~~lL~~ea~~~l~~~~~~V~TP~~~~~~g~~~~-~~i~~V~Il 220 (222)
+..+++. +||++++++|+|||++|++.+||++++||+++|+|||++++|+++.+|+||+| .++|..++ +++|+||||
T Consensus 13 ~~~~~~~-~~p~i~~~lt~lRd~~t~~~~Fr~~~~~l~~ll~yEa~~~lp~~~~~v~TP~g-~~~g~~~~g~~lviV~Il 90 (221)
T 1o5o_A 13 MKNLVVV-DHPLIKHKLTIMRDKNTGPKEFRELLREITLLLAYEATRHLKCEEVEVETPIT-KTIGYRINDKDIVVVPIL 90 (221)
T ss_dssp CTTEEEC-CCHHHHHHHHHHHSTTCCHHHHHHHHHHHHHHHHHHHTTTCCCEEEEEECSSC-EEEEEECCSTTEEEEEEE
T ss_pred cceEEec-CCHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHhcCCceEEEEECCCc-eEEEEEecCCeEEEEEEe
Confidence 3456565 59999999999999999999999999999999999999999999999999999 48999998 899999999
Q ss_pred CC
Q 027528 221 RR 222 (222)
Q Consensus 221 RA 222 (222)
||
T Consensus 91 rg 92 (221)
T 1o5o_A 91 RA 92 (221)
T ss_dssp TT
T ss_pred cc
Confidence 97
No 7
>2e55_A Uracil phosphoribosyltransferase; structural genomics; 2.15A {Aquifex aeolicus}
Probab=99.82 E-value=1.9e-20 Score=155.60 Aligned_cols=76 Identities=17% Similarity=0.084 Sum_probs=72.3
Q ss_pred eeeeccchhhhhhhhhhhcCCCCchhhhhhHHHHHHHHHHHHhCCCCCeeeEEeCCCCceeEeeeec-CcEeEEEeeCC
Q 027528 145 LYVIHSTFQIRGMHTLIRDSQTTKHDFVFYSDRLIRLVVEHGLGHLPFTEKQVITPTGAVYTGVDFC-KRLCGVSVIRR 222 (222)
Q Consensus 145 v~vl~~~p~~~~~lt~lRd~~t~~~~Fr~~~~~i~~lL~~ea~~~l~~~~~~V~TP~~~~~~g~~~~-~~i~~V~IlRA 222 (222)
+++++ ||+++|++|+|||++|++.+||++++||+++|+|||++++|+++.+|+||+|. ++|..++ +++|+||||||
T Consensus 2 v~~~~-hp~i~~~lt~lRd~~t~~~~Fr~~~~~l~~ll~~ea~~~l~~~~~~v~TP~~~-~~~~~~~g~~~~~V~ILra 78 (208)
T 2e55_A 2 IVELS-HPLIKHKVNTARIQDTSAEKLRKTLKELGFMLVYEALKDILLEEKEVRTWIGN-KRFNYLNEEEIVFVPILRA 78 (208)
T ss_dssp EEECC-CHHHHHHHHHHHCTTSCHHHHHHHHHHHHHHHHHHHTTTCCCEEEEEEETTEE-EEEEECCGGGEEEEEEETT
T ss_pred EEecC-CHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHhhCCCceeEEeCCCCc-eEeeeecCCcEEEEEEecc
Confidence 67775 99999999999999999999999999999999999999999999999999994 7999998 89999999997
No 8
>3tqc_A Pantothenate kinase; biosynthesis of cofactors, prosthetic groups, carriers, TRAN; HET: ADP; 2.30A {Coxiella burnetii}
Probab=99.81 E-value=1.1e-20 Score=166.61 Aligned_cols=119 Identities=24% Similarity=0.376 Sum_probs=102.4
Q ss_pred ccccCCC-ceeecccccccCccCCCCeeEeCCCcEEEEeccccCCChh----------hhccCCeEEEEECCHHHHHHHH
Q 027528 2 EKLRHGQ-AVDIPNYDFKSYKNNVFPARRVNPSDVILLEGILVFHDSR----------VRELMNMKIFVDTDADVRLARR 70 (222)
Q Consensus 2 ~~Lk~g~-~v~~P~YD~~~~~r~~~~~~~v~~~~vvIvEGi~~l~~~~----------l~~~~D~~Ifvd~d~d~rl~Rr 70 (222)
..|++|+ ++.+|.|||.++++..+....+.+++|||+||+|+++++. +++++|++|||++|.++++.|+
T Consensus 165 ~~L~~g~~~v~~P~yd~~~~~r~~~~~~~v~~~dIVIvEGi~lL~~~~~~~~~~~~~~l~~~~D~~I~Vda~~d~~~~R~ 244 (321)
T 3tqc_A 165 NAIKSGQRNVRIPVYSHHYYDIVRGQYEIVDQPDIVILEGLNILQTGVRKTLQQLQVFVSDFFDFSLFVDAQAQVIQKWY 244 (321)
T ss_dssp HHHHTTCSSEEEEEEETTTTEEEEEEEEEECSCSEEEEECTTTTCCCCCSSSSSCCCCGGGGCSEEEEEECCHHHHHHHH
T ss_pred HhhhccccccccchhhhhccccccCceeeccCCCEEEEEccccccccccccccchhhhhhhhcCeEEEEECCHHHHHHHH
Confidence 4678898 8999999999999743446677899999999999999763 8999999999999999999999
Q ss_pred HhhcccccC---------------CCHHHHH----HHHHhccccchhhhccccCCCccEEEcCCCCchh
Q 027528 71 IRRDTVEKG---------------RDIATVL----DQYSKFVKPAFDDFILPTKKYADIIIPRGGDNHV 120 (222)
Q Consensus 71 i~RD~~~rg---------------~~~~~~~----~~~~~~~~p~~~~~i~p~~~~ADlvi~~~~~~~~ 120 (222)
+.||...|| .+.+++. ++|....+|++++||.|++.+||+|++.|.+|.+
T Consensus 245 i~Rd~~~r~~a~~~~~s~~~~y~~~s~~ea~~~a~~~w~~~~~pn~~~~I~ptr~~Adlil~~g~~~~v 313 (321)
T 3tqc_A 245 IDRVLSFWRTTFKDPHSYFHYLTQMSETEVAAFAKHVWNEINKVNLMENILPYKNRAQLILEKAADHSI 313 (321)
T ss_dssp HHHHHHHHHTGGGSTTSTTGGGGGSCHHHHHHHHHHHHHHTHHHHHHHHTGGGGGGCSEEEEECTTSCE
T ss_pred HHhcchhhhhhccChHHHHHHHhcCCHHHHHHHHHHHHHhccccCHHHhCccCccCceEEEecCCCCcE
Confidence 999987764 4444443 6688888999999999999999999999988754
No 9
>1i5e_A Uracil phosphoribosyltransferase; salvage pathway; HET: U5P; 3.00A {Bacillus caldolyticus} SCOP: c.61.1.1
Probab=99.81 E-value=4.5e-20 Score=153.56 Aligned_cols=79 Identities=24% Similarity=0.307 Sum_probs=74.2
Q ss_pred CCceeeeccchhhhhhhhhhhcCCCCchhhhhhHHHHHHHHHHHHhCCCCCeeeEEeCCCCceeEeeeec-CcEeEEEee
Q 027528 142 YPNLYVIHSTFQIRGMHTLIRDSQTTKHDFVFYSDRLIRLVVEHGLGHLPFTEKQVITPTGAVYTGVDFC-KRLCGVSVI 220 (222)
Q Consensus 142 ~~~v~vl~~~p~~~~~lt~lRd~~t~~~~Fr~~~~~i~~lL~~ea~~~l~~~~~~V~TP~~~~~~g~~~~-~~i~~V~Il 220 (222)
++|+++++ ||+++|++|+|||++|++.+||++++||+++|+|||++++|+++.+|+||+|. +.|.+++ +++|+||||
T Consensus 1 ~~~v~~~~-~p~~~~~lt~lRd~~t~~~~Fr~~~~~l~~ll~~ea~~~l~~~~~~V~tPl~~-~~~~~~~~~~~~vV~Il 78 (209)
T 1i5e_A 1 MGKVYVFD-HPLIQHKLTYIRDKNTGTKEFRELVDEVATLMAFEITRDLPLEEVEIETPVSK-ARAKVIAGKKLGVIPIL 78 (209)
T ss_dssp -CCEEECC-CHHHHHHHHHHHCTTCCHHHHHHHHHHHHHHHHHHHGGGCCEEEEEEECSSCE-EEEEEECCCCEEEEEBT
T ss_pred CCCeEEcC-CHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHhcCCCcceEEecCCce-eeeeEecCCceEEEEEe
Confidence 35799986 99999999999999999999999999999999999999999999999999995 7899997 799999999
Q ss_pred CC
Q 027528 221 RR 222 (222)
Q Consensus 221 RA 222 (222)
||
T Consensus 79 r~ 80 (209)
T 1i5e_A 79 RA 80 (209)
T ss_dssp TG
T ss_pred cC
Confidence 96
No 10
>2ga8_A Hypothetical 39.9 kDa protein; YFR007W, YFH7, unknown function; HET: CME; 1.77A {Saccharomyces cerevisiae} PDB: 2gaa_A*
Probab=99.70 E-value=4.1e-18 Score=151.72 Aligned_cols=107 Identities=15% Similarity=0.187 Sum_probs=94.8
Q ss_pred CceeecccccccCccCCCCeeEeCC-CcEEEEeccccCCCh----hhhccCC-----eEEEEECCHHHHHHHHHhhcccc
Q 027528 8 QAVDIPNYDFKSYKNNVFPARRVNP-SDVILLEGILVFHDS----RVRELMN-----MKIFVDTDADVRLARRIRRDTVE 77 (222)
Q Consensus 8 ~~v~~P~YD~~~~~r~~~~~~~v~~-~~vvIvEGi~~l~~~----~l~~~~D-----~~Ifvd~d~d~rl~Rri~RD~~~ 77 (222)
+++.+|.|||.++++. .+.+.+.+ .+|||+||+|+|+.. .+++++| ++||||+|.+++++|+++||+ +
T Consensus 235 ~~v~~P~yD~~~~d~~-~~~~~v~~~~~iVIvEGi~LL~e~~~w~~l~~l~D~~~~~~~i~Vdad~ev~~~Rli~R~~-~ 312 (359)
T 2ga8_A 235 PDIFVPGFNHALKDPT-PDQYCISKFTRIVILEGLYLLYDQENWKKIYKTLADTGALLVYKIDIDYEATEERVAKRHL-Q 312 (359)
T ss_dssp CCEEEEEEETTTTEEE-EEEEEECTTCCEEEEEESSTTBCSHHHHHHHHHHHTTTCEEEEEEECCHHHHHHHHHHHHH-H
T ss_pred ceEeeccccCccCCCC-CCceEecCCCCEEEEEeehhhccccchhhhhhccccccceEEEEEECCHHHHHHHHHHhhh-c
Confidence 6799999999999984 55677766 699999999999863 5788999 999999999999999999998 4
Q ss_pred cCC--CHHHHHHHHHhccccchhhhccccCCCccEEEcCCCC
Q 027528 78 KGR--DIATVLDQYSKFVKPAFDDFILPTKKYADIIIPRGGD 117 (222)
Q Consensus 78 rg~--~~~~~~~~~~~~~~p~~~~~i~p~~~~ADlvi~~~~~ 117 (222)
+|+ +.+++.++|...+.|+. +||+|++.+||+|+...++
T Consensus 313 ~Gl~~s~eea~~r~~~~d~pN~-~~I~~~~~~ad~i~~~~~~ 353 (359)
T 2ga8_A 313 SGLVTTIAEGREKFRSNDLLNG-RDIDNHLIKVDNIVHIRND 353 (359)
T ss_dssp TTSCSSHHHHHHHHHHCTTTSS-HHHHHTBCCCTTEEEEECC
T ss_pred cCCCCCHHHHHHHHHhcCchhh-HhHhhcCCCCCEEEEecCC
Confidence 799 99999999999999987 8999999999999874433
No 11
>1sq5_A Pantothenate kinase; P-loop, transferase; HET: PAU ADP; 2.20A {Escherichia coli} SCOP: c.37.1.6 PDB: 1esm_A* 1esn_A*
Probab=99.66 E-value=9.1e-17 Score=140.21 Aligned_cols=117 Identities=21% Similarity=0.328 Sum_probs=96.7
Q ss_pred cccCCCc-eeecccccccCccCCCCeeEeCCCcEEEEeccccCCC----------hhhhccCCeEEEEECCHHHHHHHHH
Q 027528 3 KLRHGQA-VDIPNYDFKSYKNNVFPARRVNPSDVILLEGILVFHD----------SRVRELMNMKIFVDTDADVRLARRI 71 (222)
Q Consensus 3 ~Lk~g~~-v~~P~YD~~~~~r~~~~~~~v~~~~vvIvEGi~~l~~----------~~l~~~~D~~Ifvd~d~d~rl~Rri 71 (222)
.++.|+. +..|.||+..+++.......+.+.++||+||++++.+ +.+++++|++|||++|.++++.|++
T Consensus 154 ~l~~~~~~i~~P~~~~~~~~~~~~~~~~~~~~~ivIlEG~~l~~~~~~~~~~~~~~~~~~~~D~~i~V~~~~~~~~~R~~ 233 (308)
T 1sq5_A 154 DLKSGVPNVTAPVYSHLIYDVIPDGDKTVVQPDILILEGLNVLQSGMDYPHDPHHVFVSDFVDFSIYVDAPEDLLQTWYI 233 (308)
T ss_dssp HHTTTCSCEEECCEETTTTEECTTCCEEEC-CCEEEEECTTTTCCGGGCTTSCCSSCGGGGCSEEEEEECCHHHHHHHHH
T ss_pred HHhCCCCceecccccccccCcccccceecCCCCEEEECchhhCCCccccccccchHHHHHhCCEEEEEECCHHHHHHHHH
Confidence 4566776 9999999999987433345567789999999999986 2789999999999999999999999
Q ss_pred hhcccc---------------cCCCHHHHH----HHHHhccccchhhhccccCCCccEEEcCCCCch
Q 027528 72 RRDTVE---------------KGRDIATVL----DQYSKFVKPAFDDFILPTKKYADIIIPRGGDNH 119 (222)
Q Consensus 72 ~RD~~~---------------rg~~~~~~~----~~~~~~~~p~~~~~i~p~~~~ADlvi~~~~~~~ 119 (222)
+||... +|.+.+++. .+|...++|++.+||+|.+..||+||++++++.
T Consensus 234 ~R~~~~r~~~~r~~~~~~~~~~g~s~e~a~~~i~~q~~~~~~~~~~~~i~~~~~~AD~vI~n~~~~~ 300 (308)
T 1sq5_A 234 NRFLKFREGAFTDPDSYFHNYAKLTKEEAIKTAMTLWKEINWLNLKQNILPTRERASLILTKSANHA 300 (308)
T ss_dssp HHHHHHHHTTTTCTTSTTHHHHTSCHHHHHHHHHHHHHHTHHHHHHHTTGGGGGGCSEEEEECGGGC
T ss_pred HHHHHHHHhhccCCchhhhcccCCCHHHHHHHHHHHHHhccHHHHHHHcccccccCcEEEEeCCCCc
Confidence 998532 378888754 567777899999999999999999999876654
No 12
>1uj2_A Uridine-cytidine kinase 2; alpha/beta mononucleotide-binding HOLD, transferase; HET: C5P ADP; 1.80A {Homo sapiens} SCOP: c.37.1.6 PDB: 1uei_A* 1uej_A* 1udw_A 1ufq_A* 1xrj_A*
Probab=99.64 E-value=3.8e-16 Score=132.05 Aligned_cols=133 Identities=56% Similarity=0.926 Sum_probs=113.4
Q ss_pred ccccCCCceeecccccccCccCCCCeeEeCCCcEEEEeccccCCChhhhccCCeEEEEECCHHHHHHHHHhhcccccCCC
Q 027528 2 EKLRHGQAVDIPNYDFKSYKNNVFPARRVNPSDVILLEGILVFHDSRVRELMNMKIFVDTDADVRLARRIRRDTVEKGRD 81 (222)
Q Consensus 2 ~~Lk~g~~v~~P~YD~~~~~r~~~~~~~v~~~~vvIvEGi~~l~~~~l~~~~D~~Ifvd~d~d~rl~Rri~RD~~~rg~~ 81 (222)
+.|++|..+..|.||+.++.+ ........+.++||+||.++++.+.+.+.+|+.||+++|.++++.|+..|+...+|.+
T Consensus 101 ~~l~~~~~v~~~~~d~~~~~~-~~~~~~~~~~~~vIveG~~~~~~~~~~~~~d~vi~l~~~~e~~~~R~~~R~~~~rg~~ 179 (252)
T 1uj2_A 101 KEITEGKTVQIPVYDFVSHSR-KEETVTVYPADVVLFEGILAFYSQEVRDLFQMKLFVDTDADTRLSRRVLRDISERGRD 179 (252)
T ss_dssp HHHHTTCCEEEEEEETTTTEE-EEEEEEECCCSEEEEECTTTTSSHHHHHHCSEEEEEECCHHHHHHHHHHHHHHHSCCC
T ss_pred HHHHcCCeeecCccccccccC-CCceeeeCCCcEEEEeeeccccCHHHHHhcCeeEEEeCCHHHHHHHHHHHHHhhhCCC
Confidence 356678889999999999876 3445556678999999999987778888999999999999999999999987778999
Q ss_pred HHHHHHHHHhccccchhhhccccCCCccEEEcCCCCchhhHHHHHHHHHHHhcc
Q 027528 82 IATVLDQYSKFVKPAFDDFILPTKKYADIIIPRGGDNHVAIDLIVQHIRTKLGQ 135 (222)
Q Consensus 82 ~~~~~~~~~~~~~p~~~~~i~p~~~~ADlvi~~~~~~~~~~~~~~~~i~~~l~~ 135 (222)
.+++.++|..++.+.+..++.|.+..||++|++.-+|...++.+.+.|.+.+..
T Consensus 180 ~e~i~~~~~~~~~~~~~~~i~~~~~~ad~vI~~~id~~~s~e~v~~~I~~~l~~ 233 (252)
T 1uj2_A 180 LEQILSQYITFVKPAFEEFCLPTKKYADVIIPRGADNLVAINLIVQHIQDILNG 233 (252)
T ss_dssp HHHHHHHHHHTHHHHHHHHTGGGGGGCSEEEETGGGCHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHhccHHHHHHhhhhhhcCcEEEecCCCChhHHHHHHHHHHHHHcc
Confidence 999999999888888999999999999999965545566778888888887753
No 13
>3asz_A Uridine kinase; cytidine phosphorylation, transferase; HET: C5P; 2.25A {Thermus thermophilus} PDB: 3asy_A*
Probab=99.64 E-value=9.4e-16 Score=125.42 Aligned_cols=131 Identities=44% Similarity=0.817 Sum_probs=117.0
Q ss_pred ccCCCceeecccccccCccCCCCeeEeCCCcEEEEeccccCCChhhhccCCeEEEEECCHHHHHHHHHhhcccccCCCHH
Q 027528 4 LRHGQAVDIPNYDFKSYKNNVFPARRVNPSDVILLEGILVFHDSRVRELMNMKIFVDTDADVRLARRIRRDTVEKGRDIA 83 (222)
Q Consensus 4 Lk~g~~v~~P~YD~~~~~r~~~~~~~v~~~~vvIvEGi~~l~~~~l~~~~D~~Ifvd~d~d~rl~Rri~RD~~~rg~~~~ 83 (222)
+..++.+..|.|++..+.+ ..+...+..++++++||.+++.++.+.+++|.+||+|++.+.++.|++.|+..++|.+..
T Consensus 77 ~~~~~~~~~~~~~~s~g~~-~~~~~~~~~~~~li~~~~ll~~de~~~~~~d~~i~ld~~~~~~~~r~l~r~~~~~g~t~~ 155 (211)
T 3asz_A 77 LLRGLPVEMPVYDFRAYTR-SPRRTPVRPAPVVILEGILVLYPKELRDLMDLKVFVDADADERFIRRLKRDVLERGRSLE 155 (211)
T ss_dssp HHTTCCEEECCEETTTTEE-CSSCEEECCCSEEEEESTTTTSSHHHHTTCSEEEEEECCHHHHHHHHHHHHHHHSCCCHH
T ss_pred HHcCCCcCCCcccCcccCC-CCCeEEeCCCcEEEEeehhhccCHHHHHhcCEEEEEeCCHHHHHHHHHHHHHHHhCCCHH
Confidence 3456778889999999876 344567778899999999999988899999999999999999999999999877899999
Q ss_pred HHHHHHHhccccchhhhccccCCCccEEEcCCCCchhhHHHHHHHHHHHhcc
Q 027528 84 TVLDQYSKFVKPAFDDFILPTKKYADIIIPRGGDNHVAIDLIVQHIRTKLGQ 135 (222)
Q Consensus 84 ~~~~~~~~~~~p~~~~~i~p~~~~ADlvi~~~~~~~~~~~~~~~~i~~~l~~ 135 (222)
.+..+|...+.|.|..|++|.+..||+||+++..+..+++.+.++|++.+.+
T Consensus 156 ~~~~~~~~~~~~~~~~~~~~~~~~aD~ii~~~~~~~~~~~~~~~~i~~~~~~ 207 (211)
T 3asz_A 156 GVVAQYLEQVKPMHLHFVEPTKRYADVIVPRGGQNPVALEMLAAKALARLAR 207 (211)
T ss_dssp HHHHHHHHTHHHHHHHTTGGGGGGCSEEEESTTSCHHHHHHHHHHHTHHHHC
T ss_pred HHHHHHHHhhhhhHHHhcccchhcCeEEEeCCCcchHHHHHHHHHHHHHHHh
Confidence 9999999889999999999999999999998888889999999999888854
No 14
>3c8u_A Fructokinase; YP_612366.1, putative fructose transport system kinase, STRU genomics, joint center for structural genomics, JCSG; 1.95A {Silicibacter SP}
Probab=99.60 E-value=9.5e-16 Score=125.93 Aligned_cols=109 Identities=19% Similarity=0.234 Sum_probs=95.6
Q ss_pred cccCCCceeecccccccCccCCCCeeEeCCC-cEEEEeccccCCCh----hhhccCCeEEEEECCHHHHHHHHHhhcccc
Q 027528 3 KLRHGQAVDIPNYDFKSYKNNVFPARRVNPS-DVILLEGILVFHDS----RVRELMNMKIFVDTDADVRLARRIRRDTVE 77 (222)
Q Consensus 3 ~Lk~g~~v~~P~YD~~~~~r~~~~~~~v~~~-~vvIvEGi~~l~~~----~l~~~~D~~Ifvd~d~d~rl~Rri~RD~~~ 77 (222)
.|..|+.+..|.||+..+.+ .++...+.++ +++|+||.|++.++ .+.+.+|.+||++++.++++.|.+.|+. +
T Consensus 94 ~l~~~~~i~~p~~d~~~~~~-~g~~~~v~~~~~~~i~eg~~~l~de~~~~~l~~~~d~~i~vd~~~~~~~~R~~~R~~-~ 171 (208)
T 3c8u_A 94 ALKHQERVIYPLFDRARDIA-IAGAAEVGPECRVAIIEGNYLLFDAPGWRDLTAIWDVSIRLEVPMADLEARLVQRWL-D 171 (208)
T ss_dssp HHHHCSCEEEEEEETTTTEE-EEEEEEECTTCCEEEEEESSTTBCSTTGGGGGGTCSEEEEECCCHHHHHHHHHHHHH-H
T ss_pred HHhcCCceecccCCccccCC-CCCceEEcCCCcEEEECCceeccCCchhHHHHHhcCEEEEEeCCHHHHHHHHHHHHH-h
Confidence 45668889999999999886 5667778776 99999999997754 5688999999999999999999999975 6
Q ss_pred cCCCHHHHHHHHHhccccchhhhccccCCCccEEEcC
Q 027528 78 KGRDIATVLDQYSKFVKPAFDDFILPTKKYADIIIPR 114 (222)
Q Consensus 78 rg~~~~~~~~~~~~~~~p~~~~~i~p~~~~ADlvi~~ 114 (222)
+|++.+++..+|..+++|++ .|++|.+..||+||++
T Consensus 172 ~g~t~~~~~~~~~~~~~~~~-~~i~~~~~~aD~vi~~ 207 (208)
T 3c8u_A 172 HGLNHDAAVARAQGNDLANA-RAIEAARLPADLTWPQ 207 (208)
T ss_dssp TTCCHHHHHHHHHTHHHHHH-HHHHTTBCCCSEEEC-
T ss_pred cCCCHHHHHHHHHhccHHHH-HHHHhCCCCCCEEeeC
Confidence 79999999999998889977 8999999999999974
No 15
>2jeo_A Uridine-cytidine kinase 1; UCK, transferase, ATP-binding, nucleoside kinase, nucleotide-binding; 2.50A {Homo sapiens} PDB: 2uvq_A*
Probab=99.59 E-value=7.6e-15 Score=123.50 Aligned_cols=130 Identities=53% Similarity=0.942 Sum_probs=111.9
Q ss_pred ccCCCceeecccccccCccCCCCeeEeCCCcEEEEeccccCCChhhhccCCeEEEEECCHHHHHHHHHhhcccccCCCHH
Q 027528 4 LRHGQAVDIPNYDFKSYKNNVFPARRVNPSDVILLEGILVFHDSRVRELMNMKIFVDTDADVRLARRIRRDTVEKGRDIA 83 (222)
Q Consensus 4 Lk~g~~v~~P~YD~~~~~r~~~~~~~v~~~~vvIvEGi~~l~~~~l~~~~D~~Ifvd~d~d~rl~Rri~RD~~~rg~~~~ 83 (222)
|..+....++.|++..+.+. .....+.+.+++|+||++++.++.+.+++|.+||++++.+.++.|++.||+ ++|++.+
T Consensus 106 l~~~~~~~~~~ls~g~~~r~-~~~~~~~~~~~lilDg~~~~~~~~l~~~~~~~i~v~th~~~~~~r~~~r~~-~~G~~~e 183 (245)
T 2jeo_A 106 IVEGKTVEVPTYDFVTHSRL-PETTVVYPADVVLFEGILVFYSQEIRDMFHLRLFVDTDSDVRLSRRVLRDV-RRGRDLE 183 (245)
T ss_dssp HHTTCCEEECCEETTTTEEC-SSCEEECCCSEEEEECTTTTTSHHHHTTCSEEEEEECCHHHHHHHHHHHHT-C---CHH
T ss_pred HHCCCCeecccccccccCcc-CceEEecCCCEEEEeCccccccHHHHHhcCeEEEEECCHHHHHHHHHHHHH-HcCCCHH
Confidence 44566788899999888773 444556778999999999987788899999999999999999999999998 7899999
Q ss_pred HHHHHHHhccccchhhhccccCCCccEEEcCCCCchhhHHHHHHHHHHHhcc
Q 027528 84 TVLDQYSKFVKPAFDDFILPTKKYADIIIPRGGDNHVAIDLIVQHIRTKLGQ 135 (222)
Q Consensus 84 ~~~~~~~~~~~p~~~~~i~p~~~~ADlvi~~~~~~~~~~~~~~~~i~~~l~~ 135 (222)
++.++|...+.|.++.|++|.+..||+||+++.+|...++.+.++|.+.+.+
T Consensus 184 ~~~~~~~~~~~~~~~~~i~p~~~~aD~vi~~~~dn~~~~~~l~~~i~~~~~~ 235 (245)
T 2jeo_A 184 QILTQYTTFVKPAFEEFCLPTKKYADVIIPRGVDNMVAINLIVQHIQDILNG 235 (245)
T ss_dssp HHHHHHHHTHHHHHHHHTGGGGGGCSEEEESSTTCHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHhhhHhHHHhCCcchhcceEEEcCCCCccHHHHHHHHHHHHHHhc
Confidence 9999999989999999999999999999998878888999999999888763
No 16
>1a7j_A Phosphoribulokinase; transferase, calvin cycle; 2.50A {Rhodobacter sphaeroides} SCOP: c.37.1.6
Probab=99.57 E-value=1.5e-15 Score=131.72 Aligned_cols=112 Identities=18% Similarity=0.201 Sum_probs=91.9
Q ss_pred cccCCCceeeccccc-----ccCccCCC---CeeEe-CCCcEEEEeccccC---CChhhhccCCeEEEEECCHHHHHHHH
Q 027528 3 KLRHGQAVDIPNYDF-----KSYKNNVF---PARRV-NPSDVILLEGILVF---HDSRVRELMNMKIFVDTDADVRLARR 70 (222)
Q Consensus 3 ~Lk~g~~v~~P~YD~-----~~~~r~~~---~~~~v-~~~~vvIvEGi~~l---~~~~l~~~~D~~Ifvd~d~d~rl~Rr 70 (222)
.++.|+.+..|.|+| ..+.+..+ .+..+ .+.+++|+||.+++ ....+.+++|++|||++|.++++.|+
T Consensus 86 ~l~~~~~i~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~vvIvEG~~~~~~~~~~~v~~~~D~~IfV~a~~~~rl~Rr 165 (290)
T 1a7j_A 86 EYGETGQGRTRTYVHDDAEAARTGVAPGNFTDWRDFDSDSHLLFYEGLHGAVVNSEVNIAGLADLKIGVVPVINLEWIQK 165 (290)
T ss_dssp HHHHHSCCEECCCC------CCSSCCTTSCCCCEECCSSCSEEEEEESCTTCBCSSCBCGGGCSEEEEEEECHHHHHHHH
T ss_pred HHHcCCcccceeeccccccccccCCCCCccccccccCCCCCEEEEEecccccccchHhHHHhCCEEEEEECCHHHHHHHH
Confidence 455678889999966 33333211 12345 46899999999998 44578899999999999999999999
Q ss_pred HhhcccccCCCHHHHHHHHHhccccchhhhccccCCCccE------EEcCC
Q 027528 71 IRRDTVEKGRDIATVLDQYSKFVKPAFDDFILPTKKYADI------IIPRG 115 (222)
Q Consensus 71 i~RD~~~rg~~~~~~~~~~~~~~~p~~~~~i~p~~~~ADl------vi~~~ 115 (222)
+.||..+||++.++++++|..+ +|.|..|+.|.+..||+ +|+|+
T Consensus 166 l~Rd~~~RG~s~e~v~~~i~~r-~~~~~r~i~p~~~~AD~~~~~~~vIDns 215 (290)
T 1a7j_A 166 IHRDRATRGYTTEAVTDVILRR-MHAYVHCIVPQFSQTDINFQRVPVVDTS 215 (290)
T ss_dssp HHHTSSSCCSCCCCHHHHHHHH-HHHHHHHTGGGGGTCSEEEEEEESSCCS
T ss_pred hhhhhhhcCCChHHHHHHHHHh-CccHHHhhhhhhccCCEeeccCceecCC
Confidence 9999999999999999999987 99999999999999999 67754
No 17
>3aez_A Pantothenate kinase; transferase, homodimer, COA biosynthesis, nucleotide binding binding, cytoplasm, nucleotide-binding; HET: GDP PAZ; 2.20A {Mycobacterium tuberculosis} PDB: 2ges_A* 2geu_A* 2gev_A* 2zs7_A* 2zs8_A* 2zs9_A* 2zsa_A* 2zsb_A* 2zsd_A* 2zse_A* 2zsf_A* 2get_A* 3af0_A* 3af1_A* 3af2_A* 3af3_A* 3af4_A* 3avp_A* 3avo_A* 3avq_A*
Probab=99.54 E-value=7.3e-15 Score=128.79 Aligned_cols=118 Identities=19% Similarity=0.330 Sum_probs=97.3
Q ss_pred cccCCCc-eeecccccccCccCCCCeeEeCCCcEEEEeccccCCC---hhhhccCCeEEEEECCHHHHHHHHHhhccc--
Q 027528 3 KLRHGQA-VDIPNYDFKSYKNNVFPARRVNPSDVILLEGILVFHD---SRVRELMNMKIFVDTDADVRLARRIRRDTV-- 76 (222)
Q Consensus 3 ~Lk~g~~-v~~P~YD~~~~~r~~~~~~~v~~~~vvIvEGi~~l~~---~~l~~~~D~~Ifvd~d~d~rl~Rri~RD~~-- 76 (222)
.+..|.. ..+|.||+...+|.......+.+++|||+||++++.+ +.+++++|++|||++|.++++.|+++|++.
T Consensus 164 ~l~~~~~~~~~~~lS~G~~qRv~~a~al~~~p~ilIlDep~~~~d~~~~~l~~~~D~~I~V~a~~~~~~~R~i~R~~~~r 243 (312)
T 3aez_A 164 SVKSGSDYACAPVYSHLHYDIIPGAEQVVRHPDILILEGLNVLQTGPTLMVSDLFDFSLYVDARIEDIEQWYVSRFLAMR 243 (312)
T ss_dssp HHHTTCSCEEEEEEETTTTEEEEEEEEEECSCSEEEEECTTTTCCCSSCCGGGGCSEEEEEEECHHHHHHHHHHHHHHHT
T ss_pred HhCCCcccCCcccCChhhhhhhhhHHHhccCCCEEEECCccccCCcchHHHHHhcCcEEEEECCHHHHHHHHHHHHHHHH
Confidence 3445654 8899999999888433344567889999999999964 689999999999999999999999998553
Q ss_pred ---c----------cCCCHHHHH----HHHHhccccchhhhccccCCCccEEEcCCCCchh
Q 027528 77 ---E----------KGRDIATVL----DQYSKFVKPAFDDFILPTKKYADIIIPRGGDNHV 120 (222)
Q Consensus 77 ---~----------rg~~~~~~~----~~~~~~~~p~~~~~i~p~~~~ADlvi~~~~~~~~ 120 (222)
+ .|.+.+++. .+|...++|++.+||.|++.+||+||+++.++.+
T Consensus 244 d~~~r~~~~~~~~~~g~s~e~a~~~v~~~~~~~~~p~~~~~i~p~~~~ADlii~~~~~~~v 304 (312)
T 3aez_A 244 TTAFADPESHFHHYAAFSDSQAVVAAREIWRTINRPNLVENILPTRPRATLVLRKDADHSI 304 (312)
T ss_dssp TTGGGSTTSTTGGGTTCCHHHHHHHHHHHHHHTHHHHHHHTTGGGGGGCSEEEEECTTSCE
T ss_pred hccccCcchhhhcccCCCHHHHHHHHHHHHHhccHHHHHHhccCCCCCCeEEEecCCCCce
Confidence 2 277888877 5688888999999999999999999998877643
No 18
>1odf_A YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser2 intergenic region; yeast protein, ATP binding protein; 2.25A {Saccharomyces cerevisiae} SCOP: c.37.1.6
Probab=99.45 E-value=3e-14 Score=123.64 Aligned_cols=115 Identities=16% Similarity=0.233 Sum_probs=87.3
Q ss_pred ccccCC------Cceeeccccccc----CccCC-CCeeEeCCCcEEEEeccccCCChh----------------------
Q 027528 2 EKLRHG------QAVDIPNYDFKS----YKNNV-FPARRVNPSDVILLEGILVFHDSR---------------------- 48 (222)
Q Consensus 2 ~~Lk~g------~~v~~P~YD~~~----~~r~~-~~~~~v~~~~vvIvEGi~~l~~~~---------------------- 48 (222)
+.|++| +.+.+|.||+.. ++|.. ..+..+ +++|||+||++++.+++
T Consensus 112 ~~l~~g~~t~~~~~v~~p~y~~~~sgGq~~R~~~a~~~~~-~~~IlIlEG~~~~ld~~~~~~~~~~~~~~~l~~~n~~l~ 190 (290)
T 1odf_A 112 NTIFNNNEHPDQDTVVLPKYDKSQFKGEGDRCPTGQKIKL-PVDIFILEGWFLGFNPILQGIENNDLLTGDMVDVNAKLF 190 (290)
T ss_dssp HHHTC------CCEEEECCEETTHHHHTCEECSSCEEEES-SCSEEEEEESSTTCCCCCSCTTTCSSSCTTHHHHHHHHH
T ss_pred HHhhccCccccCcceeeccCccccCCccccccccccceEc-CCCEEEEeCccccCCccchhhhhcccchhhHHHHHHHHH
Confidence 356666 779999999999 88742 235777 89999999999977664
Q ss_pred -----hhccCCeE---EEEECCHHHHHHH-HHhh--cc-ccc--CCCHHHHHHHHHhccccchhhhccccC------CCc
Q 027528 49 -----VRELMNMK---IFVDTDADVRLAR-RIRR--DT-VEK--GRDIATVLDQYSKFVKPAFDDFILPTK------KYA 108 (222)
Q Consensus 49 -----l~~~~D~~---Ifvd~d~d~rl~R-ri~R--D~-~~r--g~~~~~~~~~~~~~~~p~~~~~i~p~~------~~A 108 (222)
+++++|++ |||++|.+.++.| |++| |+ .+| |++.+++ .+|..+++|+|+.|+.|.. +.|
T Consensus 191 ~y~~~l~~~~D~~d~~I~vd~~~~~~i~rWRi~re~~l~~~r~~g~s~e~v-~~~~~~~~p~y~~~~~~~~~~~~~~~~a 269 (290)
T 1odf_A 191 FYSDLLWRNPEIKSLGIVFTTDNINNVYGWRLQQEHELISKVGKGMTDEQV-HAFVDRYMPSYKLYLNDFVRSESLGSIA 269 (290)
T ss_dssp HHHHHTTTCTTCCEEEEEEEESCTTHHHHHHHHHHHHHHHHHSCSCCHHHH-HHHHHTTHHHHHHHHHHHHHHTCSSSSE
T ss_pred HHHHHHHhhhhhhcceEEEECCCHHHHHHHHHHHHHHHHHhccCCCCHHHH-HHHHHHhcchHHHHhHHHHHhccCCCCC
Confidence 35455555 9999988888777 8998 63 345 9999997 6677789998888887742 379
Q ss_pred cEEEcCCCCc
Q 027528 109 DIIIPRGGDN 118 (222)
Q Consensus 109 Dlvi~~~~~~ 118 (222)
|+|+..+.+.
T Consensus 270 dlvl~~~~~~ 279 (290)
T 1odf_A 270 TLTLGIDSNR 279 (290)
T ss_dssp EEEEEECTTS
T ss_pred CEEEEECCCC
Confidence 9999866554
No 19
>1rz3_A Hypothetical protein rbstp0775; MCSG, structural genomics, PSI, protein structure initiative; 1.90A {Geobacillus stearothermophilus} SCOP: c.37.1.6
Probab=99.42 E-value=4.3e-14 Score=115.47 Aligned_cols=104 Identities=18% Similarity=0.356 Sum_probs=71.9
Q ss_pred ccccCCCceeecccccccCccCCCCeeEeCCCcEEEEeccccCCChhhhccCCeEEEEECCHHHHHHHHHhhcccccCCC
Q 027528 2 EKLRHGQAVDIPNYDFKSYKNNVFPARRVNPSDVILLEGILVFHDSRVRELMNMKIFVDTDADVRLARRIRRDTVEKGRD 81 (222)
Q Consensus 2 ~~Lk~g~~v~~P~YD~~~~~r~~~~~~~v~~~~vvIvEGi~~l~~~~l~~~~D~~Ifvd~d~d~rl~Rri~RD~~~rg~~ 81 (222)
.++++|+.+.+|.|+|..+.+. .......+.++||+||.+++. +.+.+++|++|||++|.++++.|++.||
T Consensus 95 ~~l~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~vIveg~~l~~-~~~~~~~d~~i~v~~~~~~~~~R~~~R~------- 165 (201)
T 1rz3_A 95 RQLKASHQLTLPFYDHETDTHS-KRTVYLSDSDMIMIEGVFLQR-KEWRPFFDFVVYLDCPREIRFARENDQV------- 165 (201)
T ss_dssp GGTTTCSEEEEEEEETTTTEEE-EEEEECTTCSEEEEEETTTTS-TTTGGGCSEEEEECCC-------------------
T ss_pred HHHhcCCccccCceeccCCCCC-CceEEeCCCcEEEEechhhcc-HHHHhhcCEEEEEeCCHHHHHHHHhcCC-------
Confidence 3466788999999999865442 223445678999999999985 6788899999999999999999999997
Q ss_pred HHHHHHHHHhccccchhhhcccc--CCCccEEEcCC
Q 027528 82 IATVLDQYSKFVKPAFDDFILPT--KKYADIIIPRG 115 (222)
Q Consensus 82 ~~~~~~~~~~~~~p~~~~~i~p~--~~~ADlvi~~~ 115 (222)
+++.++|...++|++..|+.+. +..||+||+|+
T Consensus 166 -~~~~~~~~~~~~~~~~~y~~~~~~~~~AD~vI~N~ 200 (201)
T 1rz3_A 166 -KQNIQKFINRYWKAEDYYLETEEPIKRADVVFDMT 200 (201)
T ss_dssp ---CHHHHHHHHHHHHHHHHHHHCHHHHCSEEEC--
T ss_pred -HHHHHHHHhheeHHHHHHhCCCCcHhhCcEEecCC
Confidence 5677778667889999998887 68999999865
No 20
>2f6r_A COA synthase, bifunctional coenzyme A synthase; 18044849, bifunctional coenzyme A synthase (COA synthase), S genomics; HET: ACO UNL; 1.70A {Mus musculus}
Probab=98.56 E-value=4.2e-07 Score=77.84 Aligned_cols=74 Identities=8% Similarity=0.168 Sum_probs=59.9
Q ss_pred CCcEEEEeccccCCChhhhccCCeEEEEECCHHHHHHHHHhhcccccCCCHHHHHHHHHhccccchhhhccccCCCccEE
Q 027528 32 PSDVILLEGILVFHDSRVRELMNMKIFVDTDADVRLARRIRRDTVEKGRDIATVLDQYSKFVKPAFDDFILPTKKYADII 111 (222)
Q Consensus 32 ~~~vvIvEGi~~l~~~~l~~~~D~~Ifvd~d~d~rl~Rri~RD~~~rg~~~~~~~~~~~~~~~p~~~~~i~p~~~~ADlv 111 (222)
+.++||+||.+++. ..+.+.+|+.|||++|.++++.|...|+ |++.+++.+++... .+. ..++ ..||++
T Consensus 180 ~~~~vIveg~~l~~-~~~~~~~d~vI~l~a~~ev~~~Rl~~R~----g~s~e~~~~ri~~q-~~~-~~~~----~~AD~v 248 (281)
T 2f6r_A 180 GKTLCVIDAAMLLE-AGWQSMVHEVWTVVIPETEAVRRIVERD----GLSEAAAQSRLQSQ-MSG-QQLV----EQSNVV 248 (281)
T ss_dssp TCCEEEEECTTTTT-TTGGGGCSEEEEEECCHHHHHHHHHHHH----CCCHHHHHHHHHTS-CCH-HHHH----HTCSEE
T ss_pred CCCEEEEEechhhc-cchHHhCCEEEEEcCCHHHHHHHHHHcC----CCCHHHHHHHHHHc-CCh-HhhH----hhCCEE
Confidence 46799999998764 4677889999999999999999999996 67899999888875 443 3333 468999
Q ss_pred EcCCC
Q 027528 112 IPRGG 116 (222)
Q Consensus 112 i~~~~ 116 (222)
|+++.
T Consensus 249 Idn~~ 253 (281)
T 2f6r_A 249 LSTLW 253 (281)
T ss_dssp EECSS
T ss_pred EECCC
Confidence 98764
No 21
>2qt1_A Nicotinamide riboside kinase 1; non-protein kinase, NAD+, NRK1, nicotinic acid riboside kinase activity, NAD biosynthesis; HET: NNR; 1.32A {Homo sapiens} PDB: 2qsy_A* 2qsz_A* 2qt0_A* 2p0e_A* 2qg6_A* 2ql6_A*
Probab=98.49 E-value=9e-08 Score=77.57 Aligned_cols=94 Identities=13% Similarity=0.185 Sum_probs=66.4
Q ss_pred CCCcEEEEeccccCCChhhhccCCeEEEEECCHHHHHHHHHhhcccccCCCHHHHHHHHHhccccchhhhccccCCCccE
Q 027528 31 NPSDVILLEGILVFHDSRVRELMNMKIFVDTDADVRLARRIRRDTVEKGRDIATVLDQYSKFVKPAFDDFILPTKKYADI 110 (222)
Q Consensus 31 ~~~~vvIvEGi~~l~~~~l~~~~D~~Ifvd~d~d~rl~Rri~RD~~~rg~~~~~~~~~~~~~~~p~~~~~i~p~~~~ADl 110 (222)
.+.+++|+||.+++..+.+.+.+|..||+++|.++++.|+..|. ++.+++.++|..++++.|..+.+.....||.
T Consensus 108 ~~~~~vi~eg~~~~~~~~~~~~~d~~i~l~~~~~~~~~R~~~R~-----~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~ 182 (207)
T 2qt1_A 108 EEIPILIIEGFLLFNYKPLDTIWNRSYFLTIPYEECKRRRSTRV-----YQPPDSPGYFDGHVWPMYLKYRQEMQDITWE 182 (207)
T ss_dssp CCCCEEEEECTTCTTCGGGTTTCSEEEEEECCHHHHHHHHHHSC-----CSSCCCTTHHHHTHHHHHHHHHHHGGGCSSC
T ss_pred CCCCEEEEeehHHcCcHHHHHhcCeeEEEECCHHHHHHHHHHcC-----CCccchHHHHHHHHhHHHHHHHHHHHhcCCe
Confidence 35789999999887666788899999999999999999988774 2333333445556677777666555667786
Q ss_pred E--EcCCCCchhhHHHHHHHHHHHh
Q 027528 111 I--IPRGGDNHVAIDLIVQHIRTKL 133 (222)
Q Consensus 111 v--i~~~~~~~~~~~~~~~~i~~~l 133 (222)
+ |+++.+ ++.+.+.|.+.+
T Consensus 183 v~~Id~~~~----~eev~~~I~~~l 203 (207)
T 2qt1_A 183 VVYLDGTKS----EEDLFLQVYEDL 203 (207)
T ss_dssp CEEEETTSC----HHHHHHHHHHHH
T ss_pred EEEecCCCC----HHHHHHHHHHHH
Confidence 6 776533 445555555554
No 22
>4i1u_A Dephospho-COA kinase; structural genomics, niaid, national institute of allergy AN infectious diseases; 2.05A {Burkholderia vietnamiensis} PDB: 4i1v_A*
Probab=98.33 E-value=3e-06 Score=70.01 Aligned_cols=74 Identities=16% Similarity=0.167 Sum_probs=61.3
Q ss_pred CCcEEEEeccccCCChhhhccCCeEEEEECCHHHHHHHHHhhcccccCCCHHHHHHHHHhccccchhhhccccCCCccEE
Q 027528 32 PSDVILLEGILVFHDSRVRELMNMKIFVDTDADVRLARRIRRDTVEKGRDIATVLDQYSKFVKPAFDDFILPTKKYADII 111 (222)
Q Consensus 32 ~~~vvIvEGi~~l~~~~l~~~~D~~Ifvd~d~d~rl~Rri~RD~~~rg~~~~~~~~~~~~~~~p~~~~~i~p~~~~ADlv 111 (222)
+.+++++|...++-...+.+++|..|||++|+++++.|.+.|| |.+.+++..++.. .+|.. +.++.||+|
T Consensus 111 ~~~~vv~d~pLL~E~~~~~~~~D~vi~V~ap~e~r~~Rl~~Rd----g~s~eea~~ri~~-Q~~~e-----ek~~~AD~V 180 (210)
T 4i1u_A 111 QGPYVIFVVPLLVESRNWKARCDRVLVVDCPVDTQIARVMQRN----GFTREQVEAIIAR-QATRE-----ARLAAADDV 180 (210)
T ss_dssp CSSSEEEECTTCTTCHHHHHHCSEEEEEECCHHHHHHHHHHHH----CCCHHHHHHHHHH-SCCHH-----HHHHTCSEE
T ss_pred CCCEEEEEEecccccCCccccCCeEEEEECCHHHHHHHHHhcC----CCCHHHHHHHHHH-cCChH-----HHHHhCCEE
Confidence 4578999998776425677889999999999999999999998 7899999988776 45653 345899999
Q ss_pred EcCC
Q 027528 112 IPRG 115 (222)
Q Consensus 112 i~~~ 115 (222)
|+|+
T Consensus 181 IdN~ 184 (210)
T 4i1u_A 181 IVND 184 (210)
T ss_dssp EECS
T ss_pred EECC
Confidence 9876
No 23
>1jjv_A Dephospho-COA kinase; P-loop nucleotide-binding fold, structure 2 function project, S2F, structural genomics, transferase; HET: ATP; 2.00A {Haemophilus influenzae} SCOP: c.37.1.1
Probab=98.31 E-value=1.7e-06 Score=69.80 Aligned_cols=90 Identities=17% Similarity=0.217 Sum_probs=62.1
Q ss_pred CcEEEEeccccCCChhhhccCCeEEEEECCHHHHHHHHHhhcccccCCCHHHHHHHHHhccccchhhhccccCCCccEEE
Q 027528 33 SDVILLEGILVFHDSRVRELMNMKIFVDTDADVRLARRIRRDTVEKGRDIATVLDQYSKFVKPAFDDFILPTKKYADIII 112 (222)
Q Consensus 33 ~~vvIvEGi~~l~~~~l~~~~D~~Ifvd~d~d~rl~Rri~RD~~~rg~~~~~~~~~~~~~~~p~~~~~i~p~~~~ADlvi 112 (222)
.+.+|+||.+.+.. .+.+.+|..||+++|.++++.|...|+ |.+.+++.+++... .+.. |..+.||++|
T Consensus 105 ~~~vv~~~~~l~e~-~~~~~~d~vi~l~~~~e~~~~Rl~~R~----~~~~e~~~~r~~~q-~~~~-----~~~~~ad~vI 173 (206)
T 1jjv_A 105 APYTLFVVPLLIEN-KLTALCDRILVVDVSPQTQLARSAQRD----NNNFEQIQRIMNSQ-VSQQ-----ERLKWADDVI 173 (206)
T ss_dssp SSEEEEECTTTTTT-TCGGGCSEEEEEECCHHHHHHHHC---------CHHHHHHHHHHS-CCHH-----HHHHHCSEEE
T ss_pred CCEEEEEechhhhc-CcHhhCCEEEEEECCHHHHHHHHHHcC----CCCHHHHHHHHHhc-CChH-----HHHHhCCEEE
Confidence 45899999766543 367789999999999999999999986 67888888887753 3332 3335799999
Q ss_pred cCCCCchhhHHHHHHHHHHHh
Q 027528 113 PRGGDNHVAIDLIVQHIRTKL 133 (222)
Q Consensus 113 ~~~~~~~~~~~~~~~~i~~~l 133 (222)
+++...+++++.+.+.|.+.+
T Consensus 174 dn~~~~~~~~~~~~~~i~~~~ 194 (206)
T 1jjv_A 174 NNDAELAQNLPHLQQKVLELH 194 (206)
T ss_dssp ECCSCHHHHHHHHHHHHHHHH
T ss_pred ECCCCccccHHHHHHHHHHHH
Confidence 987654544446666665554
No 24
>1q3t_A Cytidylate kinase; nucleotide monophosphate kinase, CMP kinase, transferase; NMR {Streptococcus pneumoniae} SCOP: c.37.1.1
Probab=98.16 E-value=9.3e-06 Score=67.17 Aligned_cols=82 Identities=22% Similarity=0.263 Sum_probs=61.0
Q ss_pred CCcEEEEeccccCCChhhhccCCeEEEEECCHHHHHHHHHhhcccccCC--CHHHHHHHHHhccccchhhhccccCCCcc
Q 027528 32 PSDVILLEGILVFHDSRVRELMNMKIFVDTDADVRLARRIRRDTVEKGR--DIATVLDQYSKFVKPAFDDFILPTKKYAD 109 (222)
Q Consensus 32 ~~~vvIvEGi~~l~~~~l~~~~D~~Ifvd~d~d~rl~Rri~RD~~~rg~--~~~~~~~~~~~~~~p~~~~~i~p~~~~AD 109 (222)
..+.+|+||..... .+.+..|++||+++|.++++.|++.|.. .||+ +.+++.+.+..+..+.+..++.|....||
T Consensus 134 ~~~~~v~~g~~~~~--~~l~~~d~vi~L~a~~e~~~~R~~~~~~-~R~~~~~~e~~~~~i~~R~~~~~~~~~~p~~~~~d 210 (236)
T 1q3t_A 134 QQGGIVMDGRDIGT--VVLPQAELKIFLVASVDERAERRYKENI-AKGIETDLETLKKEIAARDYKDSHRETSPLKQAED 210 (236)
T ss_dssp TTSCEEEECSSCSS--SSGGGCSEEEEEECCHHHHHHHHHHHHH-HTTCCCCHHHHHHHHHHHHHHHTTCSSSCCSCCTT
T ss_pred ccCCEEEECCcchh--hhccCCCEEEEEECCHHHHHHHHHHHHH-hcCCCCCHHHHHHHHHHHhhhhhhcccccccccCC
Confidence 44577889985532 2334579999999999999999876642 4554 78888888887677777777888777777
Q ss_pred -EEEcCCC
Q 027528 110 -IIIPRGG 116 (222)
Q Consensus 110 -lvi~~~~ 116 (222)
++|+++.
T Consensus 211 ~~vId~~~ 218 (236)
T 1q3t_A 211 AVYLDTTG 218 (236)
T ss_dssp CEEEECSS
T ss_pred EEEEcCCC
Confidence 9998663
No 25
>2if2_A Dephospho-COA kinase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; 3.00A {Aquifex aeolicus}
Probab=98.07 E-value=1.2e-05 Score=64.58 Aligned_cols=85 Identities=22% Similarity=0.309 Sum_probs=61.4
Q ss_pred cEEEEeccccCCChhhhccCCeEEEEECCHHHHHHHHHhhcccccCCCHHHHHHHHHhccccchhhhccccCCCccEEEc
Q 027528 34 DVILLEGILVFHDSRVRELMNMKIFVDTDADVRLARRIRRDTVEKGRDIATVLDQYSKFVKPAFDDFILPTKKYADIIIP 113 (222)
Q Consensus 34 ~vvIvEGi~~l~~~~l~~~~D~~Ifvd~d~d~rl~Rri~RD~~~rg~~~~~~~~~~~~~~~p~~~~~i~p~~~~ADlvi~ 113 (222)
.++|+||.+.+. ..+..++|..||+++|.++++.|...| |.+.+++.+++... .|. .+....||++|+
T Consensus 106 ~~vive~~~l~~-~~~~~~~~~~i~l~~~~e~~~~Rl~~R-----~~~~~~~~~~~~~~-~~~-----~~~~~~ad~vId 173 (204)
T 2if2_A 106 TLFILEASLLVE-KGTYKNYDKLIVVYAPYEVCKERAIKR-----GMSEEDFERRWKKQ-MPI-----EEKVKYADYVID 173 (204)
T ss_dssp CCEEEECSCSTT-TTCGGGSSEEEEECCCHHHHHHHHHHT-----CCCHHHHHHHHTTS-CCH-----HHHGGGCSEECC
T ss_pred CEEEEEcccccc-CCchhhCCEEEEEECCHHHHHHHHHHc-----CCCHHHHHHHHHhC-CCh-----hHHHhcCCEEEE
Confidence 799999987654 456678999999999999999999887 57778887777653 332 233567899998
Q ss_pred CCCCchhhHHHHHHHHHHHhc
Q 027528 114 RGGDNHVAIDLIVQHIRTKLG 134 (222)
Q Consensus 114 ~~~~~~~~~~~~~~~i~~~l~ 134 (222)
++.+ ++.+.+.|.+.+.
T Consensus 174 ~~~~----~~~~~~~i~~~l~ 190 (204)
T 2if2_A 174 NSGS----IEETYKQVKKVYE 190 (204)
T ss_dssp CSSC----HHHHHHHHHHHHH
T ss_pred CCCC----HHHHHHHHHHHHH
Confidence 6532 3444555555553
No 26
>3ake_A Cytidylate kinase; CMP kinase, CMP complex, open conformation, nucleotide metab transferase; HET: C5P; 1.50A {Thermus thermophilus} PDB: 3akc_A* 3akd_A*
Probab=98.01 E-value=2.4e-05 Score=62.51 Aligned_cols=73 Identities=19% Similarity=0.212 Sum_probs=52.8
Q ss_pred cEEEEeccccCCChhhhccCCeEEEEECCHHHHHHHHHhhcccccCCCHHHHHHHHHhccccchhhhccccCCCcc-EEE
Q 027528 34 DVILLEGILVFHDSRVRELMNMKIFVDTDADVRLARRIRRDTVEKGRDIATVLDQYSKFVKPAFDDFILPTKKYAD-III 112 (222)
Q Consensus 34 ~vvIvEGi~~l~~~~l~~~~D~~Ifvd~d~d~rl~Rri~RD~~~rg~~~~~~~~~~~~~~~p~~~~~i~p~~~~AD-lvi 112 (222)
+.+|+||..+. ..+.+..|++|||++|.++++.|+..|+. .+.+++.+.+..+ .+.+..+. ...|| ++|
T Consensus 119 ~~~vi~g~~~~--~~~~~~~d~~i~l~a~~e~~~~R~~~r~~----~~~~~~~~~~~~R-~~~~~~~~---~~~ad~~~I 188 (208)
T 3ake_A 119 PPFVAEGRDMG--TAVFPEAAHKFYLTASPEVRAWRRARERP----QAYEEVLRDLLRR-DERDKAQS---APAPDALVL 188 (208)
T ss_dssp SCEEEEESSCC--CCCCTTCSEEEEEECCHHHHHHHHHHTSS----SCHHHHHHHHHHH-HHTC--CC---CCCTTCEEE
T ss_pred CCEEEEcccee--EEEecCCcEEEEEECCHHHHHHHHHhhcc----cCHHHHHHHHHHH-HHHHhhcc---cCCCCEEEE
Confidence 67999999776 24456689999999999999999999863 5677777777653 22222221 55688 999
Q ss_pred cCCC
Q 027528 113 PRGG 116 (222)
Q Consensus 113 ~~~~ 116 (222)
+++.
T Consensus 189 d~~~ 192 (208)
T 3ake_A 189 DTGG 192 (208)
T ss_dssp ETTT
T ss_pred ECCC
Confidence 8764
No 27
>1uf9_A TT1252 protein; P-loop, nucleotide binding domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ATP; 2.80A {Thermus thermophilus} SCOP: c.37.1.1
Probab=97.96 E-value=2.1e-05 Score=62.65 Aligned_cols=88 Identities=18% Similarity=0.286 Sum_probs=61.9
Q ss_pred CCcEEEEeccccCCChhhhccCCeEEEEECCHHHHHHHHHhhcccccCCCHHHHHHHHHhccccchhhhccccCCCccEE
Q 027528 32 PSDVILLEGILVFHDSRVRELMNMKIFVDTDADVRLARRIRRDTVEKGRDIATVLDQYSKFVKPAFDDFILPTKKYADII 111 (222)
Q Consensus 32 ~~~vvIvEGi~~l~~~~l~~~~D~~Ifvd~d~d~rl~Rri~RD~~~rg~~~~~~~~~~~~~~~p~~~~~i~p~~~~ADlv 111 (222)
+.++||+||.+++. ..+.+..|..||+++|.++++.|...|+ |.+.+++...+.. ..+.+ +....||++
T Consensus 105 g~~~vi~d~~~l~~-~~~~~~~d~~i~l~~~~e~~~~R~~~R~----~~~~~~~~~~i~~-~~~~~-----~~~~~ad~v 173 (203)
T 1uf9_A 105 EAPLVFLEIPLLFE-KGWEGRLHGTLLVAAPLEERVRRVMARS----GLSREEVLARERA-QMPEE-----EKRKRATWV 173 (203)
T ss_dssp CCSEEEEECTTTTT-TTCGGGSSEEEEECCCHHHHHHHHHTTT----CCTTHHHHHHHTT-SCCHH-----HHHHHCSEE
T ss_pred CCCEEEEEecceec-cCchhhCCEEEEEECCHHHHHHHHHHcC----CCCHHHHHHHHHH-CCChh-----HHHHhCCEE
Confidence 36899999987654 4556778999999999999999999886 4566777666665 34332 224568999
Q ss_pred EcCCCCchhhHHHHHHHHHHHhc
Q 027528 112 IPRGGDNHVAIDLIVQHIRTKLG 134 (222)
Q Consensus 112 i~~~~~~~~~~~~~~~~i~~~l~ 134 (222)
|+++. .++.+.+.|.+.+.
T Consensus 174 Id~~~----~~~~~~~~i~~~~~ 192 (203)
T 1uf9_A 174 LENTG----SLEDLERALKAVLA 192 (203)
T ss_dssp ECCSS----HHHHHHHHHHHHHH
T ss_pred EECCC----CHHHHHHHHHHHHH
Confidence 98663 34455555555553
No 28
>1cke_A CK, MSSA, protein (cytidine monophosphate kinase); nucleotide monophosphate kinase,, transferase; 1.75A {Escherichia coli} SCOP: c.37.1.1 PDB: 1kdo_A* 1kdp_A* 1kdr_A* 1kdt_A* 2cmk_A* 2fem_A 2feo_A*
Probab=97.96 E-value=3.7e-05 Score=62.45 Aligned_cols=81 Identities=16% Similarity=0.167 Sum_probs=50.2
Q ss_pred CCcEEEEeccccCCChhhhccCCeEEEEECCHHHHHHHHHhhcccccCC--CHHHHHHHHHhccccchhhhccccCCC-c
Q 027528 32 PSDVILLEGILVFHDSRVRELMNMKIFVDTDADVRLARRIRRDTVEKGR--DIATVLDQYSKFVKPAFDDFILPTKKY-A 108 (222)
Q Consensus 32 ~~~vvIvEGi~~l~~~~l~~~~D~~Ifvd~d~d~rl~Rri~RD~~~rg~--~~~~~~~~~~~~~~p~~~~~i~p~~~~-A 108 (222)
..+.+++||..... .+.+..|++||+++|.++++.|+..+ ...||+ +.+++.+.+.++..+.+..+.+|.... +
T Consensus 122 ~~~~~vldg~~~~~--~~~~~~d~~i~l~~~~e~~~~R~~~~-l~~rg~~~~~~~~~~~i~~R~~~~~~~~~~pl~~~~~ 198 (227)
T 1cke_A 122 ELPGLIADGRDMGT--VVFPDAPVKIFLDASSEERAHRRMLQ-LQVKGFSVNFERLLAEIKERDDRDRNRAVAPLVPAAD 198 (227)
T ss_dssp CTTCEEEEESSCCC--CCCTTCSEEEEEECCHHHHHHHHHHH-HHHHTCCCCHHHHHHHHC-------------CCCCTT
T ss_pred hCCCEEEECCCccc--eEecCCCEEEEEeCCHHHHHHHHHHH-HHhCCccCCHHHHHHHHHHHHHhhhhhcccCccCCCC
Confidence 45789999984322 33456899999999999999997654 234566 788888888877667776677887655 4
Q ss_pred cEEEcCC
Q 027528 109 DIIIPRG 115 (222)
Q Consensus 109 Dlvi~~~ 115 (222)
+++|+++
T Consensus 199 ~~~Id~~ 205 (227)
T 1cke_A 199 ALVLDST 205 (227)
T ss_dssp CEEEETT
T ss_pred EEEEeCC
Confidence 5888866
No 29
>3lw7_A Adenylate kinase related protein (ADKA-like); AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 2.30A {Sulfolobus solfataricus} PDB: 3h0k_A
Probab=97.90 E-value=1.6e-05 Score=61.28 Aligned_cols=82 Identities=18% Similarity=0.334 Sum_probs=54.4
Q ss_pred CCCcEEEEeccccCCC-hhhhccC---CeEEEEECCHHHHHHHHHhhcccccCCCHHHHHHHHHhccccchhhhccccCC
Q 027528 31 NPSDVILLEGILVFHD-SRVRELM---NMKIFVDTDADVRLARRIRRDTVEKGRDIATVLDQYSKFVKPAFDDFILPTKK 106 (222)
Q Consensus 31 ~~~~vvIvEGi~~l~~-~~l~~~~---D~~Ifvd~d~d~rl~Rri~RD~~~rg~~~~~~~~~~~~~~~p~~~~~i~p~~~ 106 (222)
...+.+|++|...... ..++..+ +..||+++|.++++.|...|+....+.+.+++..++....... ..+...
T Consensus 76 ~~~~~vi~dg~~~~~~~~~l~~~~~~~~~~i~l~~~~~~~~~R~~~R~~~~~~~~~~~~~~r~~~~~~~~----~~~~~~ 151 (179)
T 3lw7_A 76 SNHDLVVFDGVRSLAEVEEFKRLLGDSVYIVAVHSPPKIRYKRMIERLRSDDSKEISELIRRDREELKLG----IGEVIA 151 (179)
T ss_dssp CCCSCEEEECCCCHHHHHHHHHHHCSCEEEEEEECCHHHHHHHHHTCC----CCCHHHHHHHHHHHHHHT----HHHHHH
T ss_pred cCCCeEEEeCCCCHHHHHHHHHHhCCCcEEEEEECCHHHHHHHHHhccCCCCcchHHHHHHHHHhhhccC----hHhHHH
Confidence 4568899999721110 2334444 3899999999999999999986555678888888774321111 334567
Q ss_pred CccEEEcCCC
Q 027528 107 YADIIIPRGG 116 (222)
Q Consensus 107 ~ADlvi~~~~ 116 (222)
.||++|+++.
T Consensus 152 ~ad~vId~~~ 161 (179)
T 3lw7_A 152 MADYIITNDS 161 (179)
T ss_dssp TCSEEEECCS
T ss_pred hCCEEEECCC
Confidence 8999999664
No 30
>1vht_A Dephospho-COA kinase; structural genomics, transferase; HET: BA3; 1.59A {Escherichia coli} SCOP: c.37.1.1 PDB: 1vhl_A* 1viy_A 1t3h_A 1n3b_A
Probab=97.85 E-value=0.0001 Score=59.71 Aligned_cols=89 Identities=18% Similarity=0.148 Sum_probs=61.0
Q ss_pred CcEEEEeccccCCChhhhccCCeEEEEECCHHHHHHHHHhhcccccCCCHHHHHHHHHhccccchhhhccccCCCccEEE
Q 027528 33 SDVILLEGILVFHDSRVRELMNMKIFVDTDADVRLARRIRRDTVEKGRDIATVLDQYSKFVKPAFDDFILPTKKYADIII 112 (222)
Q Consensus 33 ~~vvIvEGi~~l~~~~l~~~~D~~Ifvd~d~d~rl~Rri~RD~~~rg~~~~~~~~~~~~~~~p~~~~~i~p~~~~ADlvi 112 (222)
..++++||.+.+... +.+.+|+.||+++|.++++.|...|+ |.+.+++.+.+... .+.+. ....||++|
T Consensus 107 ~~~vi~~~~~l~~~~-~~~~~d~vi~l~~~~e~~~~Rl~~R~----~~~~~~~~~~~~~~-~~~~~-----~~~~ad~vI 175 (218)
T 1vht_A 107 SPYVLWVVPLLVENS-LYKKANRVLVVDVSPETQLKRTMQRD----DVTREHVEQILAAQ-ATREA-----RLAVADDVI 175 (218)
T ss_dssp SSEEEEECTTTTTTT-GGGGCSEEEEEECCHHHHHHHHHHHH----TCCHHHHHHHHHHS-CCHHH-----HHHHCSEEE
T ss_pred CCEEEEEeeeeeccC-ccccCCEEEEEECCHHHHHHHHHHcC----CCCHHHHHHHHHhc-CChHH-----HHHhCCEEE
Confidence 467889997765433 66789999999999999999999886 56777777777653 44332 235689999
Q ss_pred cCCCCchhhHHHHHHHHHHH
Q 027528 113 PRGGDNHVAIDLIVQHIRTK 132 (222)
Q Consensus 113 ~~~~~~~~~~~~~~~~i~~~ 132 (222)
+++.+-+...+.+.+.+...
T Consensus 176 d~~~~~~~~~~~I~~~l~~~ 195 (218)
T 1vht_A 176 DNNGAPDAIASDVARLHAHY 195 (218)
T ss_dssp ECSSCTTSHHHHHHHHHHHH
T ss_pred ECCCCHHHHHHHHHHHHHHH
Confidence 97653333334444444433
No 31
>4e22_A Cytidylate kinase; P-loop, CMP/ATP binding, transferase; 2.32A {Yersinia pseudotuberculosis}
Probab=97.82 E-value=0.00011 Score=61.57 Aligned_cols=99 Identities=14% Similarity=0.123 Sum_probs=57.7
Q ss_pred CCcEEEEeccccCCChhhhccCCeEEEEECCHHHHHHHHHhhcccc-cCCCHHHHHHHHHhccccchhhhccccCCCcc-
Q 027528 32 PSDVILLEGILVFHDSRVRELMNMKIFVDTDADVRLARRIRRDTVE-KGRDIATVLDQYSKFVKPAFDDFILPTKKYAD- 109 (222)
Q Consensus 32 ~~~vvIvEGi~~l~~~~l~~~~D~~Ifvd~d~d~rl~Rri~RD~~~-rg~~~~~~~~~~~~~~~p~~~~~i~p~~~~AD- 109 (222)
...-+|+||-..-. -+.+-.|++||+++|.++|..|+....... .+.+.+++.+....+.......++.|....||
T Consensus 144 ~~~~~V~~gr~~~~--~v~~~~~~~ifl~A~~e~r~~R~~~~l~~~~~~~~~~~~~~~i~~rd~~~~~r~~~pl~~~~d~ 221 (252)
T 4e22_A 144 EAPGLIADGRDMGT--IVFPDAPVKIFLDASSQERAHRRMLQLQERGFNVNFERLLAEIQERDNRDRNRSVAPLVPAADA 221 (252)
T ss_dssp CSSCEEEEESSCCC--CCSTTCSEEEEEECCHHHHHHHHHHHHHHHTCCCCHHHHHHHHC------------CCCCCTTE
T ss_pred hCCCEEEEeceece--eecCCCCEEEEEECCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHhhhccccchhccCCe
Confidence 34557889864422 122336899999999999999988632111 24688899888887777777788889999988
Q ss_pred EEEcCCCCc-hhhHHHHHHHHHHH
Q 027528 110 IIIPRGGDN-HVAIDLIVQHIRTK 132 (222)
Q Consensus 110 lvi~~~~~~-~~~~~~~~~~i~~~ 132 (222)
++|+++..+ +-.++.+.+.+...
T Consensus 222 ~~Idts~~~~eev~~~I~~~i~~~ 245 (252)
T 4e22_A 222 LVLDSTSMSIEQVIEQALAYAQRI 245 (252)
T ss_dssp EEEECSSSCHHHHHHHHHHHHHHH
T ss_pred EEEECcCCCHHHHHHHHHHHHHHH
Confidence 889876433 22334444444443
No 32
>2grj_A Dephospho-COA kinase; TM1387, EC 2.7.1.24, dephosphocoenzyme kinase, structural genomics, joint center for structural GE JCSG; HET: ADP COD; 2.60A {Thermotoga maritima}
Probab=97.79 E-value=7.9e-05 Score=60.33 Aligned_cols=61 Identities=16% Similarity=0.151 Sum_probs=47.2
Q ss_pred CcEEEEeccccCCChhhhccCCeEEEEECCHHHHHHHHHhhcccccCCCHHHHHHHHHhccccchhhhccccCCCccEEE
Q 027528 33 SDVILLEGILVFHDSRVRELMNMKIFVDTDADVRLARRIRRDTVEKGRDIATVLDQYSKFVKPAFDDFILPTKKYADIII 112 (222)
Q Consensus 33 ~~vvIvEGi~~l~~~~l~~~~D~~Ifvd~d~d~rl~Rri~RD~~~rg~~~~~~~~~~~~~~~p~~~~~i~p~~~~ADlvi 112 (222)
.++||+||.+++.. .+.+.+|..|||++|.+++++|.+. .++ |. |+++.++.||++|
T Consensus 111 ~~~vv~d~pll~e~-~~~~~~d~vi~v~a~~e~r~~Rli~--------------~q~-----~~---~~~~~~~~AD~vI 167 (192)
T 2grj_A 111 SGLIVIEAALLKRM-GLDQLCDHVITVVASRETILKRNRE--------------ADR-----RL---KFQEDIVPQGIVV 167 (192)
T ss_dssp CEEEEEECTTTTTT-TGGGGCSEEEEEECCHHHHHHHCSS--------------HHH-----HH---TTCTTCCCCSEEE
T ss_pred CCEEEEEEeceeec-ChHHhCCEEEEEECCHHHHHHHHHH--------------hcC-----Cc---hhhhHHhcCCEEE
Confidence 47999999988764 6788899999999999999999811 122 22 3456688999999
Q ss_pred cCCC
Q 027528 113 PRGG 116 (222)
Q Consensus 113 ~~~~ 116 (222)
+|+.
T Consensus 168 ~n~~ 171 (192)
T 2grj_A 168 ANNS 171 (192)
T ss_dssp ECSS
T ss_pred ECCC
Confidence 9774
No 33
>3d3q_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2; 2.70A {Staphylococcus epidermidis atcc 12228}
Probab=97.74 E-value=1.8e-06 Score=76.21 Aligned_cols=93 Identities=12% Similarity=0.083 Sum_probs=66.3
Q ss_pred ccCCCceeecccccccCccCCCCeeEeCCCcEEEEeccccCCChhhhccCCeEEEEE-CCHH--HHHHHHHhhcccccCC
Q 027528 4 LRHGQAVDIPNYDFKSYKNNVFPARRVNPSDVILLEGILVFHDSRVRELMNMKIFVD-TDAD--VRLARRIRRDTVEKGR 80 (222)
Q Consensus 4 Lk~g~~v~~P~YD~~~~~r~~~~~~~v~~~~vvIvEGi~~l~~~~l~~~~D~~Ifvd-~d~d--~rl~Rri~RD~~~rg~ 80 (222)
+..+.. .+|.|||..+.+..-..+.-.+..+||++|.+. +.+.+.+.+| +|.+ +|.+ +|+.|++.| ..++|.
T Consensus 69 i~~~~~-~~~~~dF~~~a~~~i~~i~~~g~~~IlvGGt~l-y~~~l~~~l~--~~~~~~d~~~~~Rlrrrl~r-~~~~G~ 143 (340)
T 3d3q_A 69 ILPPDA-SFSAYEFKKRAEKYIKDITRRGKVPIIAGGTGL-YIQSLLYNYA--FEDESISEDKMKQVKLKLKE-LEHLNN 143 (340)
T ss_dssp CBCTTS-CCCHHHHHHHHHHHHHHHHHTTCEEEEECCCHH-HHHHHHBCSC--CC---CCHHHHHHHHHHHHT-TSSSCH
T ss_pred HhCCcc-ccCHHHHHHHHHHHHHHHHhCCCcEEEECChhh-hHHHHHhccc--ccCCCCChHHHHHHHHHHHH-HHhcCH
Confidence 445555 788899887765211122225678888888885 4577777776 8899 9998 889999999 877776
Q ss_pred CHHHHHHHHHhccccchhhhcccc
Q 027528 81 DIATVLDQYSKFVKPAFDDFILPT 104 (222)
Q Consensus 81 ~~~~~~~~~~~~~~p~~~~~i~p~ 104 (222)
+++.+|...+.|.+..+|.|.
T Consensus 144 ---~~l~~~L~~vdP~~a~~I~p~ 164 (340)
T 3d3q_A 144 ---NKLHEYLASFDKESAKDIHPN 164 (340)
T ss_dssp ---HHHHHHHHHHCHHHHHHSCTT
T ss_pred ---HHHHHHHHhhCcHHHhhcCcc
Confidence 367778888899998888764
No 34
>2h92_A Cytidylate kinase; rossmann fold, transferase; HET: C5P PG4; 2.30A {Staphylococcus aureus}
Probab=97.71 E-value=0.00013 Score=59.06 Aligned_cols=97 Identities=15% Similarity=0.248 Sum_probs=63.1
Q ss_pred CCcEEEEeccccCCChhhhccCCeEEEEECCHHHHHHHHHhhcccccCC--CHHHHHHHHHhccccchhhhccccCCCcc
Q 027528 32 PSDVILLEGILVFHDSRVRELMNMKIFVDTDADVRLARRIRRDTVEKGR--DIATVLDQYSKFVKPAFDDFILPTKKYAD 109 (222)
Q Consensus 32 ~~~vvIvEGi~~l~~~~l~~~~D~~Ifvd~d~d~rl~Rri~RD~~~rg~--~~~~~~~~~~~~~~p~~~~~i~p~~~~AD 109 (222)
....+|++|-..- ..+.+..|+.||+++|.++++.|++.|. ..||. +.+++.+.+..+..+.....+.|....||
T Consensus 117 ~~~~~vi~g~~~~--~~~~~~~~~vi~l~a~~e~~~~R~~~~~-~~r~~~~~~e~~~~~~~~r~~~d~~r~~~~~~~~~d 193 (219)
T 2h92_A 117 AEKGIVMDGRDIG--TVVLPDADLKVYMIASVEERAERRYKDN-QLRGIESNFEDLKRDIEARDQYDMNREISPLRKADD 193 (219)
T ss_dssp TTCCEEEEESSCC--CCCCTTCSEEEEEECCHHHHHHHHHHHH-HHTTCCCCHHHHHHHHHHHHHHHHHCSSSCSCCCTT
T ss_pred cCCcEEEEcCCcc--ceecCCCCEEEEEECCHHHHHHHHHHHH-HhcCcccCHHHHHHHHHHHHHhhhhhhccccccCCC
Confidence 3456788886321 1233456899999999999999987653 23565 78888888876544555555667666677
Q ss_pred -EEEcCCCCchhhHHHHHHHHHHHhc
Q 027528 110 -IIIPRGGDNHVAIDLIVQHIRTKLG 134 (222)
Q Consensus 110 -lvi~~~~~~~~~~~~~~~~i~~~l~ 134 (222)
++|+++.. .++.+.+.|.+.+.
T Consensus 194 ~~~Id~~~~---~~ee~~~~I~~~l~ 216 (219)
T 2h92_A 194 AVTLDTTGK---SIEEVTDEILAMVS 216 (219)
T ss_dssp CEEEECTTC---CHHHHHHHHHHHHH
T ss_pred eEEEECCCC---CHHHHHHHHHHHHh
Confidence 99986532 23444555555443
No 35
>3r20_A Cytidylate kinase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, ADP, DCMP, D transferase; 2.00A {Mycobacterium smegmatis} SCOP: c.37.1.0 PDB: 3r8c_A 4die_A*
Probab=97.52 E-value=0.00031 Score=58.71 Aligned_cols=96 Identities=19% Similarity=0.217 Sum_probs=66.6
Q ss_pred cEEEEeccccCCChhhhccCCeEEEEECCHHHHHHHHHhhcccc-cCCCHHHHHHHHHhccccchhhhccccCCCcc-EE
Q 027528 34 DVILLEGILVFHDSRVRELMNMKIFVDTDADVRLARRIRRDTVE-KGRDIATVLDQYSKFVKPAFDDFILPTKKYAD-II 111 (222)
Q Consensus 34 ~vvIvEGi~~l~~~~l~~~~D~~Ifvd~d~d~rl~Rri~RD~~~-rg~~~~~~~~~~~~~~~p~~~~~i~p~~~~AD-lv 111 (222)
.-+|+||--+-. -+-+-.+++||+++|.++|..|+...-... .+.+.+++.+....+.......|+.|.+..+| ++
T Consensus 129 ~~~V~~GRd~gt--~V~pda~lkifl~A~~e~Ra~Rr~~~l~~~~~~~~~~~~~~~i~~rD~~d~~r~~~pl~~~~dal~ 206 (233)
T 3r20_A 129 GRVVVEGRDIGT--VVLPDADVKIFLTASAEERARRRNAQNVANGLPDDYATVLADVQRRDHLDSTRPVSPLRAADDALV 206 (233)
T ss_dssp SCEEEEESSCCC--CCCTTCSEEEEEECCHHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHSCSSCCSCCTTSEE
T ss_pred CcEEEeccccee--EEcCCCCEEEEEECCHHHHHHHHHHHHHhccCCCCHHHHHHHHHHHHHhhhhccccccccccCcEE
Confidence 567888862211 011225899999999999999998753321 35688999998888887777788999888888 99
Q ss_pred EcCCCCchhhHHHHHHHHHHHhc
Q 027528 112 IPRGGDNHVAIDLIVQHIRTKLG 134 (222)
Q Consensus 112 i~~~~~~~~~~~~~~~~i~~~l~ 134 (222)
|+++.- .++.+++.|.+.+.
T Consensus 207 IDTs~l---~iee~v~~I~~~i~ 226 (233)
T 3r20_A 207 VDTSDM---DQAQVIAHLLDLVT 226 (233)
T ss_dssp EECTTS---CHHHHHHHHHHHC-
T ss_pred EECCCC---CHHHHHHHHHHHHH
Confidence 986533 34455555555443
No 36
>2vp4_A Deoxynucleoside kinase; ATP-binding, DNA synthesis, phosphoprotein, feedback inhibition, deoxyribonucleoside kinase, salvage pathway; HET: DCP; 2.20A {Drosophila melanogaster} SCOP: c.37.1.1 PDB: 1j90_A* 2jj8_A* 2vp2_A* 1oe0_A* 2vp5_A* 2vp6_A* 2vp9_A* 2vpp_A* 2vqs_A* 2vp0_A* 1ot3_A* 2jcs_A* 1zm7_A* 1zmx_A*
Probab=97.43 E-value=1e-06 Score=72.85 Aligned_cols=104 Identities=13% Similarity=0.193 Sum_probs=65.8
Q ss_pred ccCCCceeecccccccCccCCCCeeEeCCCcEEEEeccccCCChhhhccCCeEEEEECCHHHHHHHHHhhcccccCCCHH
Q 027528 4 LRHGQAVDIPNYDFKSYKNNVFPARRVNPSDVILLEGILVFHDSRVRELMNMKIFVDTDADVRLARRIRRDTVEKGRDIA 83 (222)
Q Consensus 4 Lk~g~~v~~P~YD~~~~~r~~~~~~~v~~~~vvIvEGi~~l~~~~l~~~~D~~Ifvd~d~d~rl~Rri~RD~~~rg~~~~ 83 (222)
+..|+.+..+.|.|++.... +. .+.+..+.+++|++.+..+......|+.||+|+|+++++.|...|+ ++.+
T Consensus 101 l~~~r~v~~dry~~s~~ayq-~~--~l~~~~~~~~~~~~~~~~~~~~~~pD~vi~Ld~~~e~~~~Ri~~R~-----r~~e 172 (230)
T 2vp4_A 101 KIMERSIFSARYCFVENMRR-NG--SLEQGMYNTLEEWYKFIEESIHVQADLIIYLRTSPEVAYERIRQRA-----RSEE 172 (230)
T ss_dssp EEEESCHHHHHHTHHHHHHH-HT--SSCHHHHHHHHHHHHHHHHHBCCCCSEEEEEECCHHHHHHHHHHHC-----CGGG
T ss_pred eeecCCccccHHHHHHHHHH-cC--CCChHHHHHHHHHHHHHHHhhcCCCCEEEEEeCCHHHHHHHHHHcC-----Cccc
Confidence 34567788888888876541 11 3455677778887765433345679999999999999999988774 2222
Q ss_pred HHH-HHHHhccccchhhhcccc--CCCcc-EEEcCC
Q 027528 84 TVL-DQYSKFVKPAFDDFILPT--KKYAD-IIIPRG 115 (222)
Q Consensus 84 ~~~-~~~~~~~~p~~~~~i~p~--~~~AD-lvi~~~ 115 (222)
... ..|...+...|.++.... ...++ ++|+++
T Consensus 173 ~~~~~~~~~rv~~~~~~~~~~~~~~~~~~~~vId~~ 208 (230)
T 2vp4_A 173 SCVPLKYLQELHELHEDWLIHQRRPQSCKVLVLDAD 208 (230)
T ss_dssp TTCCHHHHHHHHHHHHHHHTSCCSSCCCEEEEEECC
T ss_pred ccCcHHHHHHHHHHHHHHHHHhcccCCCCEEEEECC
Confidence 100 124444566666665432 34454 778754
No 37
>2pt5_A Shikimate kinase, SK; aromatic amino acid biosynthesis, P-loop kinase, SHI kinase, shikimate pathway; 2.10A {Aquifex aeolicus}
Probab=96.49 E-value=0.0019 Score=49.59 Aligned_cols=93 Identities=18% Similarity=0.250 Sum_probs=52.0
Q ss_pred CCcEEEEeccccCCChhhhc-c--CCeEEEEECCHHHHHHHHHhhcccccC-C--CHHHHHHHHHhccccchhhhccccC
Q 027528 32 PSDVILLEGILVFHDSRVRE-L--MNMKIFVDTDADVRLARRIRRDTVEKG-R--DIATVLDQYSKFVKPAFDDFILPTK 105 (222)
Q Consensus 32 ~~~vvIvEGi~~l~~~~l~~-~--~D~~Ifvd~d~d~rl~Rri~RD~~~rg-~--~~~~~~~~~~~~~~p~~~~~i~p~~ 105 (222)
...+||..|-.....+..++ + .|+.||+++|.++++.|...|. .|. . ..+.+.+.|... .| ...
T Consensus 69 ~~~~Vi~~g~~~~~~~~~~~~l~~~~~~i~l~~~~e~~~~R~~~r~--~r~~~~~~~~~i~~~~~~~-~~-------~~~ 138 (168)
T 2pt5_A 69 KENVVISTGGGLGANEEALNFMKSRGTTVFIDIPFEVFLERCKDSK--ERPLLKRPLDEIKNLFEER-RK-------IYS 138 (168)
T ss_dssp SSSEEEECCHHHHTCHHHHHHHHTTSEEEEEECCHHHHHHHCBCTT--CCBGGGSCGGGTHHHHHHH-HH-------HHT
T ss_pred cCCeEEECCCCEeCCHHHHHHHHcCCEEEEEECCHHHHHHHHhCCC--CCCCCcchHHHHHHHHHHH-HH-------HHH
Confidence 45677775532222232221 2 6899999999999999987763 111 1 123333334321 11 123
Q ss_pred CCccEEEcCCCCchhhHHHHHHHHHHHhccCCcc
Q 027528 106 KYADIIIPRGGDNHVAIDLIVQHIRTKLGQHDLC 139 (222)
Q Consensus 106 ~~ADlvi~~~~~~~~~~~~~~~~i~~~l~~~~~~ 139 (222)
. ||++| ++.. .++.+.+.|.+.+..+.++
T Consensus 139 ~-~~~~i-~~~~---~~~~~~~~i~~~l~~~~~~ 167 (168)
T 2pt5_A 139 K-ADIKV-KGEK---PPEEVVKEILLSLEGNALG 167 (168)
T ss_dssp T-SSEEE-ECSS---CHHHHHHHHHHHHHTSCC-
T ss_pred h-CCEEE-CCCC---CHHHHHHHHHHHHHhccCC
Confidence 4 99999 5522 3456667777777665543
No 38
>2jaq_A Deoxyguanosine kinase; transferase, deoxyribonucleoside kinase; HET: DCP; 2.3A {Mycoplasma mycoides subsp} PDB: 2jat_A* 2jas_A*
Probab=96.44 E-value=0.0026 Score=50.13 Aligned_cols=74 Identities=14% Similarity=0.331 Sum_probs=45.8
Q ss_pred ccCCeEEEEECCHHHHHHHHHhhcccccCCCHHHHH-HHHHhccccchhhhccccC-CCccEEEcCCCCchhhHHHHHHH
Q 027528 51 ELMNMKIFVDTDADVRLARRIRRDTVEKGRDIATVL-DQYSKFVKPAFDDFILPTK-KYADIIIPRGGDNHVAIDLIVQH 128 (222)
Q Consensus 51 ~~~D~~Ifvd~d~d~rl~Rri~RD~~~rg~~~~~~~-~~~~~~~~p~~~~~i~p~~-~~ADlvi~~~~~~~~~~~~~~~~ 128 (222)
...|..||+++|.++++.|...| |+..+... ..+.......|..+..+.. ..||++|+++. .++.+.+.
T Consensus 123 ~~~d~vi~L~~~~e~~~~Rl~~R-----~r~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~Id~~~----~~~~v~~~ 193 (205)
T 2jaq_A 123 LSFDIVIYLRVSTKTAISRIKKR-----GRSEELLIGEEYWETLNKNYEEFYKQNVYDFPFFVVDAEL----DVKTQIEL 193 (205)
T ss_dssp CCCSEEEEEECCHHHHHHHHHHH-----TCHHHHHSCHHHHHHHHHHHHHHHHHHTTTSCEEEEETTS----CHHHHHHH
T ss_pred CCCCEEEEEeCCHHHHHHHHHHc-----CChhhhcCcHHHHHHHHHHHHHHHHHccccCcEEEEECCC----CHHHHHHH
Confidence 45789999999999999997665 44443211 1222333444554455555 67999998664 34455555
Q ss_pred HHHHh
Q 027528 129 IRTKL 133 (222)
Q Consensus 129 i~~~l 133 (222)
|.+.+
T Consensus 194 I~~~l 198 (205)
T 2jaq_A 194 IMNKL 198 (205)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 55554
No 39
>3vaa_A Shikimate kinase, SK; structural genomics, center for structural genomics of infec diseases, csgid, metal binding, transferase; 1.70A {Bacteroides thetaiotaomicron}
Probab=96.36 E-value=0.025 Score=44.85 Aligned_cols=94 Identities=17% Similarity=0.189 Sum_probs=53.9
Q ss_pred CCcEEEEeccccCCChhhhc---cCCeEEEEECCHHHHHHHHH-hhccc--ccCCCHHHHHHHHH---hccccchhhhcc
Q 027528 32 PSDVILLEGILVFHDSRVRE---LMNMKIFVDTDADVRLARRI-RRDTV--EKGRDIATVLDQYS---KFVKPAFDDFIL 102 (222)
Q Consensus 32 ~~~vvIvEGi~~l~~~~l~~---~~D~~Ifvd~d~d~rl~Rri-~RD~~--~rg~~~~~~~~~~~---~~~~p~~~~~i~ 102 (222)
..++||..|-.....+.... -.+..||+++|.++.+.|.. .|..+ ..+.+.+++.+.+. ....|.|
T Consensus 94 ~~~~vi~~ggg~~~~~~~~~~l~~~~~vi~L~~~~e~l~~Rl~~~~~~Rp~~~~~~~~~~~~~i~~~~~~r~~~y----- 168 (199)
T 3vaa_A 94 FENVVISTGGGAPCFYDNMEFMNRTGKTVFLNVHPDVLFRRLRIAKQQRPILQGKEDDELMDFIIQALEKRAPFY----- 168 (199)
T ss_dssp CSSEEEECCTTGGGSTTHHHHHHHHSEEEEEECCHHHHHHHHHHTGGGCGGGTTCCHHHHHHHHHHHHHHHHHHH-----
T ss_pred cCCcEEECCCcEEccHHHHHHHHcCCEEEEEECCHHHHHHHHhcCCCCCCCcCCCChhhHHHHHHHHHHHHHHHH-----
Confidence 45777777654443343322 25899999999999988877 33211 12445544332222 2223332
Q ss_pred ccCCCccEEEcCCC-CchhhHHHHHHHHHHHh
Q 027528 103 PTKKYADIIIPRGG-DNHVAIDLIVQHIRTKL 133 (222)
Q Consensus 103 p~~~~ADlvi~~~~-~~~~~~~~~~~~i~~~l 133 (222)
.. ||++|+++. .-+...+.+++.+...|
T Consensus 169 --~~-ad~~Idt~~~s~ee~~~~I~~~l~~~l 197 (199)
T 3vaa_A 169 --TQ-AQYIFNADELEDRWQIESSVQRLQELL 197 (199)
T ss_dssp --TT-SSEEEECCCCSSHHHHHHHHHHHHHHT
T ss_pred --hh-CCEEEECCCCCHHHHHHHHHHHHHHHh
Confidence 22 899999765 33445566666666554
No 40
>1tev_A UMP-CMP kinase; ploop, NMP binding region, LID region, conformational changes, transferase; 2.10A {Homo sapiens} SCOP: c.37.1.1
Probab=96.22 E-value=0.0088 Score=46.57 Aligned_cols=94 Identities=14% Similarity=0.334 Sum_probs=53.3
Q ss_pred CCcEEEEeccccCCC--hhhhc------cCCeEEEEECCHHHHHHHHHhhcccc-cCC-CHHHH---HHHHHhccccchh
Q 027528 32 PSDVILLEGILVFHD--SRVRE------LMNMKIFVDTDADVRLARRIRRDTVE-KGR-DIATV---LDQYSKFVKPAFD 98 (222)
Q Consensus 32 ~~~vvIvEGi~~l~~--~~l~~------~~D~~Ifvd~d~d~rl~Rri~RD~~~-rg~-~~~~~---~~~~~~~~~p~~~ 98 (222)
....+|++|...... ..+.. ..|+.||+++|.++++.|...|+... |.. +.+.+ +..|.....|...
T Consensus 85 ~~~~vi~dg~~~~~~~~~~~~~~~~~~~~~~~~i~l~~~~e~~~~R~~~R~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~ 164 (196)
T 1tev_A 85 QKNKFLIDGFPRNQDNLQGWNKTMDGKADVSFVLFFDCNNEICIERCLERGKSSGRSDDNRESLEKRIQTYLQSTKPIID 164 (196)
T ss_dssp TCCEEEEESCCCSHHHHHHHHHHHTTTCEEEEEEEEECCHHHHHHHHHHHHHTSSCCSCCHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCeEEEeCCCCCHHHHHHHHHHhcccCCCCEEEEEECCHHHHHHHHHcccccCCCCCCCHHHHHHHHHHHHHhHHHHHH
Confidence 467889999876431 11211 36789999999999999999997421 211 23333 3334443333222
Q ss_pred hhccccCCCccE-EEcCCCCchhhHHHHHHHHHHHh
Q 027528 99 DFILPTKKYADI-IIPRGGDNHVAIDLIVQHIRTKL 133 (222)
Q Consensus 99 ~~i~p~~~~ADl-vi~~~~~~~~~~~~~~~~i~~~l 133 (222)
.| ...+++ +|+++.. ++.+.+.|.+.+
T Consensus 165 ~y----~~~~~~~~id~~~~----~~~v~~~i~~~l 192 (196)
T 1tev_A 165 LY----EEMGKVKKIDASKS----VDEVFDEVVQIF 192 (196)
T ss_dssp HH----HHTTCEEEEETTSC----HHHHHHHHHHHH
T ss_pred HH----HhcCCEEEEECCCC----HHHHHHHHHHHH
Confidence 22 234676 7775522 344445554444
No 41
>2bwj_A Adenylate kinase 5; phosphoryl transfer reaction, transferase; HET: AMP; 2.3A {Homo sapiens}
Probab=96.17 E-value=0.0059 Score=47.94 Aligned_cols=44 Identities=16% Similarity=0.139 Sum_probs=32.7
Q ss_pred CCcEEEEeccccCCC--hhhhc---cCCeEEEEECCHHHHHHHHHhhcc
Q 027528 32 PSDVILLEGILVFHD--SRVRE---LMNMKIFVDTDADVRLARRIRRDT 75 (222)
Q Consensus 32 ~~~vvIvEGi~~l~~--~~l~~---~~D~~Ifvd~d~d~rl~Rri~RD~ 75 (222)
....+|++|...... ..+.. ..|+.||+++|.++++.|...|+.
T Consensus 90 ~~~~vi~dg~~~~~~~~~~l~~~~~~~~~~i~l~~~~~~~~~R~~~R~~ 138 (199)
T 2bwj_A 90 DTRGFLIDGYPREVKQGEEFGRRIGDPQLVICMDCSADTMTNRLLQMSR 138 (199)
T ss_dssp SCSCEEEETCCSSHHHHHHHHHHTCCCSEEEEEECCHHHHHHHHHHTCC
T ss_pred cCccEEEeCCCCCHHHHHHHHHhcCCCCEEEEEECCHHHHHHHHHcCCC
Confidence 457899999755321 12222 578999999999999999999864
No 42
>1qf9_A UMP/CMP kinase, protein (uridylmonophosphate/cytidylmonophosphate kinase); nucleoside monophosphate kinase, NMP kinase; HET: ADP C5P; 1.70A {Dictyostelium discoideum} SCOP: c.37.1.1 PDB: 1uke_A* 2ukd_A* 3ukd_A* 4ukd_A* 5ukd_A*
Probab=96.15 E-value=0.018 Score=44.72 Aligned_cols=93 Identities=16% Similarity=0.339 Sum_probs=51.7
Q ss_pred CCcEEEEeccccCCC--hhh----hc--cCCeEEEEECCHHHHHHHHHhhcccc-cC-CCHHHHHHHHH---hccccchh
Q 027528 32 PSDVILLEGILVFHD--SRV----RE--LMNMKIFVDTDADVRLARRIRRDTVE-KG-RDIATVLDQYS---KFVKPAFD 98 (222)
Q Consensus 32 ~~~vvIvEGi~~l~~--~~l----~~--~~D~~Ifvd~d~d~rl~Rri~RD~~~-rg-~~~~~~~~~~~---~~~~p~~~ 98 (222)
....+|++|...... ..+ .. ..|+.||+++|.++++.|...|+... +. .+.+.+.++.. ....|.+.
T Consensus 82 ~~~~vi~d~~~~~~~~~~~~~~~~~~~~~~~~vi~l~~~~e~~~~R~~~R~~~~~r~~~~~~~~~~ri~~~~~~~~~~~~ 161 (194)
T 1qf9_A 82 QGKNFLVDGFPRNEENNNSWEENMKDFVDTKFVLFFDCPEEVMTQRLLKRGESSGRSDDNIESIKKRFNTFNVQTKLVID 161 (194)
T ss_dssp TTCCEEEETCCCSHHHHHHHHHHHTTTCEEEEEEEEECCHHHHHHHHHHHHTTSCCTTCSHHHHHHHHHHHHHTHHHHHH
T ss_pred CCCCEEEeCcCCCHHHHHHHHHHHhccCCCCEEEEEECCHHHHHHHHHhccccCCCCCCCHHHHHHHHHHHHHhHHHHHH
Confidence 456899999533210 112 22 46899999999999999999986421 11 22455444332 22234333
Q ss_pred hhccccCCCcc--EEEcCCCCchhhHHHHHHHHHHHh
Q 027528 99 DFILPTKKYAD--IIIPRGGDNHVAIDLIVQHIRTKL 133 (222)
Q Consensus 99 ~~i~p~~~~AD--lvi~~~~~~~~~~~~~~~~i~~~l 133 (222)
.| ..|| ++|+++.+ ++.+.+.|...+
T Consensus 162 ~~-----~~~~~~~~id~~~~----~~~~~~~i~~~l 189 (194)
T 1qf9_A 162 HY-----NKFDKVKIIPANRD----VNEVYNDVENLF 189 (194)
T ss_dssp HH-----HHTTCEEEEECSSC----HHHHHHHHHHHH
T ss_pred HH-----HhCCCEEEEECCCC----HHHHHHHHHHHH
Confidence 32 2367 67876533 334444444444
No 43
>2iyv_A Shikimate kinase, SK; transferase, aromatic amino acid biosynthesis, P-loop kinase, metal- binding, shikimate pathway; HET: ADP; 1.35A {Mycobacterium tuberculosis} SCOP: c.37.1.2 PDB: 2iyr_A* 2iyq_A* 2iyt_A 2iyu_A* 2iys_A* 2iyw_A* 2iyx_A* 2iyy_A* 2iyz_A* 2g1k_A* 1l4y_A* 1u8a_A* 1we2_A* 1zyu_A* 2dfn_A* 2dft_A* 2g1j_A 1l4u_A* 3baf_A*
Probab=96.13 E-value=0.012 Score=45.94 Aligned_cols=93 Identities=17% Similarity=0.182 Sum_probs=54.6
Q ss_pred CcEEEEeccccCCChhhhcc--CCeEEEEECCHHHHHHHHHhhcccc--cCCCHHHHHHHHHhccccchhhhccccCCCc
Q 027528 33 SDVILLEGILVFHDSRVREL--MNMKIFVDTDADVRLARRIRRDTVE--KGRDIATVLDQYSKFVKPAFDDFILPTKKYA 108 (222)
Q Consensus 33 ~~vvIvEGi~~l~~~~l~~~--~D~~Ifvd~d~d~rl~Rri~RD~~~--rg~~~~~~~~~~~~~~~p~~~~~i~p~~~~A 108 (222)
...||..|.....++..++. .+..||+++|.++++.|...|+... .+.+..+.+..+.....|.| ...+
T Consensus 72 ~~~vi~~g~~~v~~~~~~~~l~~~~vV~L~~~~e~~~~Rl~~r~~r~~~~~~~~~~~i~~~~~~r~~~~-------~~~~ 144 (184)
T 2iyv_A 72 HDGVLSLGGGAVTSPGVRAALAGHTVVYLEISAAEGVRRTGGNTVRPLLAGPDRAEKYRALMAKRAPLY-------RRVA 144 (184)
T ss_dssp CCSEEECCTTGGGSHHHHHHHTTSCEEEEECCHHHHHHHTTCCCCCSSTTSCCHHHHHHHHHHHHHHHH-------HHHC
T ss_pred CCeEEecCCcEEcCHHHHHHHcCCeEEEEeCCHHHHHHHHhCCCCCCCccCCCHHHHHHHHHHHHHHHH-------hccC
Confidence 45667777554444443433 6899999999999999988775321 11233344433322122322 3568
Q ss_pred cEEEcCCCCchhhHHHHHHHHHHHhcc
Q 027528 109 DIIIPRGGDNHVAIDLIVQHIRTKLGQ 135 (222)
Q Consensus 109 Dlvi~~~~~~~~~~~~~~~~i~~~l~~ 135 (222)
|++|+++.. .++.+.+.|.+.+..
T Consensus 145 ~~~Idt~~~---s~ee~~~~I~~~l~~ 168 (184)
T 2iyv_A 145 TMRVDTNRR---NPGAVVRHILSRLQV 168 (184)
T ss_dssp SEEEECSSS---CHHHHHHHHHTTSCC
T ss_pred CEEEECCCC---CHHHHHHHHHHHHhh
Confidence 999986632 245566677666653
No 44
>3t61_A Gluconokinase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium, nysgrc; 2.20A {Sinorhizobium meliloti}
Probab=96.07 E-value=0.033 Score=44.07 Aligned_cols=88 Identities=9% Similarity=0.079 Sum_probs=51.2
Q ss_pred CCcEEEEeccccCCC--hhhhccC---CeEEEEECCHHHHHHHHHhhcccccCCCHHHHHHHHHhccccchhhhccccCC
Q 027528 32 PSDVILLEGILVFHD--SRVRELM---NMKIFVDTDADVRLARRIRRDTVEKGRDIATVLDQYSKFVKPAFDDFILPTKK 106 (222)
Q Consensus 32 ~~~vvIvEGi~~l~~--~~l~~~~---D~~Ifvd~d~d~rl~Rri~RD~~~rg~~~~~~~~~~~~~~~p~~~~~i~p~~~ 106 (222)
....+|+++.+.... ..+.... +..||+++|.++++.|...|+.. ..+ .+.++....... .+...
T Consensus 85 ~~~~vivd~~~~~~~~~~~l~~~~~~~~~vi~l~~~~e~~~~Rl~~R~~~--~~~-~~~~~~~~~~~~-------~~~~~ 154 (202)
T 3t61_A 85 SREPVVVSCSALKRSYRDKLRESAPGGLAFVFLHGSESVLAERMHHRTGH--FMP-SSLLQTQLETLE-------DPRGE 154 (202)
T ss_dssp SSSCCEEECCCCSHHHHHHHHHTSTTCCEEEEEECCHHHHHHHHHHHHSS--CCC-HHHHHHHHHHCC-------CCTTS
T ss_pred cCCCEEEECCCCCHHHHHHHHHhcCCCeEEEEEeCCHHHHHHHHHHhhcc--CCC-HHHHHHHHHhcC-------CCCCC
Confidence 445677787665311 1233333 58999999999999999998642 123 444443332222 23456
Q ss_pred CccEEEcCCCCchhhHHHHHHHH
Q 027528 107 YADIIIPRGGDNHVAIDLIVQHI 129 (222)
Q Consensus 107 ~ADlvi~~~~~~~~~~~~~~~~i 129 (222)
.||++|+++...+...+.|.+.+
T Consensus 155 ~~~~~Id~~~~~~e~~~~I~~~l 177 (202)
T 3t61_A 155 VRTVAVDVAQPLAEIVREALAGL 177 (202)
T ss_dssp TTEEEEESSSCHHHHHHHHHHHH
T ss_pred CCeEEEeCCCCHHHHHHHHHHHH
Confidence 68999997643333334444443
No 45
>1ukz_A Uridylate kinase; transferase; HET: ADP AMP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1uky_A*
Probab=95.68 E-value=0.023 Score=44.88 Aligned_cols=64 Identities=22% Similarity=0.396 Sum_probs=38.8
Q ss_pred cEEEEeccccCCC-----hhhhccCCeEEEEECCHHHHHHHHHhhcccccCC---CHHHHHHH---HHhccccchh
Q 027528 34 DVILLEGILVFHD-----SRVRELMNMKIFVDTDADVRLARRIRRDTVEKGR---DIATVLDQ---YSKFVKPAFD 98 (222)
Q Consensus 34 ~vvIvEGi~~l~~-----~~l~~~~D~~Ifvd~d~d~rl~Rri~RD~~~rg~---~~~~~~~~---~~~~~~p~~~ 98 (222)
+.+|++|...-.+ .......|+.||+++|.++++.|...|+.. +|+ +.+.+..+ |.....|.++
T Consensus 97 ~~~i~dg~~~~~~~~~~~~~~~~~~~~~i~l~~~~e~~~~Rl~~R~~~-~~~~~~~~e~~~~r~~~~~~~~~~~~~ 171 (203)
T 1ukz_A 97 HKFLIDGFPRKMDQAISFERDIVESKFILFFDCPEDIMLERLLERGKT-SGRSDDNIESIKKRFNTFKETSMPVIE 171 (203)
T ss_dssp CEEEEETCCCSHHHHHHHHHHTCCCSEEEEEECCHHHHHHHHHHHHHH-HCCTTCSHHHHHHHHHHHHHTTHHHHH
T ss_pred CeEEEeCCCCCHHHHHHHHHhcCCCCEEEEEECCHHHHHHHHHhcccc-CCCCCCCHHHHHHHHHHHHHhhHHHHH
Confidence 5778898632111 011123689999999999999999988642 233 35555444 3433455443
No 46
>2qor_A Guanylate kinase; phosphotransferase, purine metabolism, structural genomics, structural genomics of pathogenic protozoa consortium; HET: 5GP POP; 1.80A {Plasmodium vivax}
Probab=95.54 E-value=0.027 Score=44.85 Aligned_cols=92 Identities=15% Similarity=0.145 Sum_probs=51.7
Q ss_pred CCCcEEEEeccccCCChhhhccC---C-eEEEEE-CCHHHHHHHHHhhcccccCCCHHHHHHHHHhccccchhhhccc-c
Q 027528 31 NPSDVILLEGILVFHDSRVRELM---N-MKIFVD-TDADVRLARRIRRDTVEKGRDIATVLDQYSKFVKPAFDDFILP-T 104 (222)
Q Consensus 31 ~~~~vvIvEGi~~l~~~~l~~~~---D-~~Ifvd-~d~d~rl~Rri~RD~~~rg~~~~~~~~~~~~~~~p~~~~~i~p-~ 104 (222)
.....+|+++.+.-. ..++..+ + +.||++ +|.++...|...|.. .+.+++.+++.....+. .+ .
T Consensus 101 ~~g~~vi~d~~~~~~-~~l~~~~~~~~~~~i~l~~~s~e~l~~Rl~~R~~----~~~~~i~~rl~~~~~~~-----~~~~ 170 (204)
T 2qor_A 101 GEGKICLFEMNINGV-KQLKESKHIQDGIYIFVKPPSIDILLGRLKNRNT----EKPEEINKRMQELTREM-----DEAD 170 (204)
T ss_dssp HTTCEEEEECCHHHH-HHHHHCSSCSCCEEEEEECSCHHHHHHHHHTCTT----SCHHHHHHHHHHHHHHH-----HHHH
T ss_pred HcCCeEEEEECHHHH-HHHHHhcCCCCeEEEEEcCCCHHHHHHHHHHcCC----CCHHHHHHHHHHHHHHH-----HHhh
Confidence 355778886533211 2444444 3 889999 788887777755531 24555544444322222 11 3
Q ss_pred CCCccEEEcCCCCchhhHHHHHHHHHHHh
Q 027528 105 KKYADIIIPRGGDNHVAIDLIVQHIRTKL 133 (222)
Q Consensus 105 ~~~ADlvi~~~~~~~~~~~~~~~~i~~~l 133 (222)
...||.+|.|+ +.+.+.+.+.+.|...+
T Consensus 171 ~~~~d~vi~n~-~~e~~~~~i~~~i~~~~ 198 (204)
T 2qor_A 171 KVGFNYFIVND-DLARTYAELREYLLGSY 198 (204)
T ss_dssp HHTCSEEEECS-SHHHHHHHHHHHHHHHC
T ss_pred hccCcEEEECc-CHHHHHHHHHHHHHHHh
Confidence 56789998875 43445555555555443
No 47
>3trf_A Shikimate kinase, SK; amino acid biosynthesis, transferase; 2.60A {Coxiella burnetii}
Probab=95.30 E-value=0.024 Score=44.03 Aligned_cols=93 Identities=20% Similarity=0.307 Sum_probs=49.9
Q ss_pred CCcEEEEeccccCCChhhhccC---CeEEEEECCHHHHHHHHHhhcccccCC-CH---HHHHHHHHhccccchhhhcccc
Q 027528 32 PSDVILLEGILVFHDSRVRELM---NMKIFVDTDADVRLARRIRRDTVEKGR-DI---ATVLDQYSKFVKPAFDDFILPT 104 (222)
Q Consensus 32 ~~~vvIvEGi~~l~~~~l~~~~---D~~Ifvd~d~d~rl~Rri~RD~~~rg~-~~---~~~~~~~~~~~~p~~~~~i~p~ 104 (222)
..+.||..|-....++..++.+ ++.||+++|.++.+.|...+.-..|+. +. .+.+........|.|.
T Consensus 74 ~~~~vi~~gg~~~~~~~~~~~l~~~~~vi~L~~~~e~l~~Rl~~~~~~~rp~~~~~~~~~~l~~~~~~r~~~y~------ 147 (185)
T 3trf_A 74 LDNIILATGGGVVLDEKNRQQISETGVVIYLTASIDTQLKRIGQKGEMRRPLFIKNNSKEKLQQLNEIRKPLYQ------ 147 (185)
T ss_dssp SSSCEEECCTTGGGSHHHHHHHHHHEEEEEEECCHHHHHHHHHCCTTCSSCCCCCHHHHHHHHHHHHHHHHHHH------
T ss_pred cCCcEEecCCceecCHHHHHHHHhCCcEEEEECCHHHHHHHHhhcCCCCCCCCCCCCHHHHHHHHHHHHHHHHh------
Confidence 3567777776555555444433 489999999999877763221112332 11 2223222222344443
Q ss_pred CCCccEEEcCCCCchhhHHHHHHHHHHHhc
Q 027528 105 KKYADIIIPRGGDNHVAIDLIVQHIRTKLG 134 (222)
Q Consensus 105 ~~~ADlvi~~~~~~~~~~~~~~~~i~~~l~ 134 (222)
..||++|+++..+ ++.+.+.|.+.+.
T Consensus 148 -~~ad~~Idt~~~~---~~e~~~~I~~~l~ 173 (185)
T 3trf_A 148 -AMADLVYPTDDLN---PRQLATQILVDIK 173 (185)
T ss_dssp -HHCSEEEECTTCC---HHHHHHHHHHHSC
T ss_pred -hcCCEEEECCCCC---HHHHHHHHHHHHH
Confidence 3499999976422 3344455555443
No 48
>3fdi_A Uncharacterized protein; cytidylate kinase like protein, PSI, MCSG, PRK04182 class ME structural genomics, protein structure initiative; 2.20A {Eubacterium ventriosum}
Probab=95.22 E-value=0.021 Score=45.98 Aligned_cols=74 Identities=23% Similarity=0.243 Sum_probs=46.7
Q ss_pred CeEEEEECCHHHHHHHHHhhcccccCCCHHHHHHHHH---hccccchhhh--cccc-CCCccEEEcCCCCchhhHHHHHH
Q 027528 54 NMKIFVDTDADVRLARRIRRDTVEKGRDIATVLDQYS---KFVKPAFDDF--ILPT-KKYADIIIPRGGDNHVAIDLIVQ 127 (222)
Q Consensus 54 D~~Ifvd~d~d~rl~Rri~RD~~~rg~~~~~~~~~~~---~~~~p~~~~~--i~p~-~~~ADlvi~~~~~~~~~~~~~~~ 127 (222)
.++|||++|.++|..|+..|+ |.+.+++.+... ....+-|..| ..|. ...+|++|+.+.- .++.+++
T Consensus 118 ~~~V~L~A~~e~r~~R~~~~~----~~~~~~~~~~i~~~d~~R~~~y~~~~~~~~~~~~~~dl~Idt~~l---~~eevv~ 190 (201)
T 3fdi_A 118 MISAFILGDKDTKTKRVMERE----GVDEKTALNMMKKMDKMRKVYHNFYCESKWGDSRTYDICIKIGKV---DVDTATD 190 (201)
T ss_dssp EEEEEEEECHHHHHHHHHHHH----TCCHHHHHHHHHHHHHHHHHHHHHHCSSCTTBGGGCSEEEEESSS---CHHHHHH
T ss_pred eEEEEEECCHHHHHHHHHHHh----CCCHHHHHHHHHHHHHHHHHHHHHHhCCCCCCcccCCEEEECCCC---CHHHHHH
Confidence 699999999999999998774 566666554332 2234444433 2343 4568999986533 2445555
Q ss_pred HHHHHhc
Q 027528 128 HIRTKLG 134 (222)
Q Consensus 128 ~i~~~l~ 134 (222)
.|.+.+.
T Consensus 191 ~I~~~i~ 197 (201)
T 3fdi_A 191 MIIKYID 197 (201)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 5555554
No 49
>1e6c_A Shikimate kinase; phosphoryl transfer, ADP, shikimate pathway, P-loop protein, transferase; 1.8A {Erwinia chrysanthemi} SCOP: c.37.1.2 PDB: 1shk_A 2shk_A*
Probab=95.07 E-value=0.035 Score=42.41 Aligned_cols=93 Identities=6% Similarity=0.042 Sum_probs=49.9
Q ss_pred CCcEEEEeccccCCChhhhcc---CCeEEEEECCHHHHHHHHH--hhcccccCC-CHHHHHHHHHhccccchhhhccc-c
Q 027528 32 PSDVILLEGILVFHDSRVREL---MNMKIFVDTDADVRLARRI--RRDTVEKGR-DIATVLDQYSKFVKPAFDDFILP-T 104 (222)
Q Consensus 32 ~~~vvIvEGi~~l~~~~l~~~---~D~~Ifvd~d~d~rl~Rri--~RD~~~rg~-~~~~~~~~~~~~~~p~~~~~i~p-~ 104 (222)
..++||..|......+..++. .|+.||+++|.++++.|.. .|.. .+.. +.++....+... |... .| .
T Consensus 70 ~~~~vi~~g~~~~~~~~~~~~l~~~~~~i~l~~~~e~~~~R~~~~~r~~-~r~~~~~~~~~~~~~~~----~~~~-~~~~ 143 (173)
T 1e6c_A 70 TPNRVVATGGGMVLLEQNRQFMRAHGTVVYLFAPAEELALRLQASLQAH-QRPTLTGRPIAEEMEAV----LRER-EALY 143 (173)
T ss_dssp CSSEEEECCTTGGGSHHHHHHHHHHSEEEEEECCHHHHHHHHHHHHCSC-CCCCTTHHHHHHHHHHH----HHHH-HHHH
T ss_pred cCCeEEECCCcEEeCHHHHHHHHcCCeEEEEECCHHHHHHHHhhccCCC-CCCcCCCCCHHHHHHHH----HHHH-HHHH
Confidence 456777777433223433332 4899999999999999988 6621 1221 222332222221 1111 11 1
Q ss_pred CCCccEEEcCCCCchhhHHHHHHHHHHHhc
Q 027528 105 KKYADIIIPRGGDNHVAIDLIVQHIRTKLG 134 (222)
Q Consensus 105 ~~~ADlvi~~~~~~~~~~~~~~~~i~~~l~ 134 (222)
.. ||++|+++.. .++.+.+.|.+.+.
T Consensus 144 ~~-~~~~Id~~~~---~~~~~~~~i~~~l~ 169 (173)
T 1e6c_A 144 QD-VAHYVVDATQ---PPAAIVCELMQTMR 169 (173)
T ss_dssp HH-HCSEEEETTS---CHHHHHHHHHHHTT
T ss_pred Hh-CcEEEECCCC---CHHHHHHHHHHHhc
Confidence 23 8999986522 24455666666554
No 50
>3nwj_A ATSK2; P loop, shikimate, nucleoside monophosphate kinase, shikimat ATP binding, chloroplast, transferase; 2.35A {Arabidopsis thaliana}
Probab=94.95 E-value=0.062 Score=44.93 Aligned_cols=41 Identities=15% Similarity=0.121 Sum_probs=29.0
Q ss_pred CcEEEEeccccCCChhhhccC--CeEEEEECCHHHHHHHHHhh
Q 027528 33 SDVILLEGILVFHDSRVRELM--NMKIFVDTDADVRLARRIRR 73 (222)
Q Consensus 33 ~~vvIvEGi~~l~~~~l~~~~--D~~Ifvd~d~d~rl~Rri~R 73 (222)
.+.||..|-.+...+.-+..+ +++||+++|.+++..|...|
T Consensus 120 ~~~Via~GgG~v~~~~~~~~l~~~~vV~L~a~~e~l~~Rl~~~ 162 (250)
T 3nwj_A 120 HQVVVSTGGGAVIRPINWKYMHKGISIWLDVPLEALAHRIAAV 162 (250)
T ss_dssp SSEEEECCGGGGGSHHHHHHHTTSEEEEEECCHHHHHHHHHC-
T ss_pred CCcEEecCCCeecCHHHHHHHhCCcEEEEECCHHHHHHHHhhc
Confidence 467888876554444333332 89999999999999887753
No 51
>1kht_A Adenylate kinase; phosphotransferase, signaling protein, transferase; HET: AMP; 2.50A {Methanococcus voltae} SCOP: c.37.1.1 PDB: 3h86_B* 1ki9_A
Probab=94.37 E-value=0.12 Score=39.77 Aligned_cols=42 Identities=19% Similarity=0.203 Sum_probs=28.5
Q ss_pred CCcEEEEeccccCCC----------hhhhc-cCCeEEEEECCHHHHHHHHHhh
Q 027528 32 PSDVILLEGILVFHD----------SRVRE-LMNMKIFVDTDADVRLARRIRR 73 (222)
Q Consensus 32 ~~~vvIvEGi~~l~~----------~~l~~-~~D~~Ifvd~d~d~rl~Rri~R 73 (222)
..+.+|++|-++... ..+.. ..|+.||+++|.++.+.||+..
T Consensus 83 ~~~~viid~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~l~~~~~~~~~rRl~~ 135 (192)
T 1kht_A 83 KESPVAVDTHSTVSTPKGYLPGLPSWVLNELNPDLIIVVETTGDEILMRRMSD 135 (192)
T ss_dssp TTSCEEEECCSEEEETTEEEESSCHHHHHHHCCSEEEEEECCHHHHHHHHHTS
T ss_pred cCCeEEEccceeccccccccccCcHHHHhccCCCEEEEEeCCHHHHHHHHhhh
Confidence 345688899764211 11233 2689999999999999877754
No 52
>2pbr_A DTMP kinase, thymidylate kinase; transferase, nucleotide biosynthesis, TMP-binding, A binding, structural genomics, NPPSFA; 1.96A {Aquifex aeolicus}
Probab=94.30 E-value=0.064 Score=41.52 Aligned_cols=68 Identities=15% Similarity=0.280 Sum_probs=39.6
Q ss_pred cCCeEEEEECCHHHHHHHHHhhcccccCCCHHHHHHHHHhccccchhhhccccCCCccEEEcCCCCchhhHHHHHHHHHH
Q 027528 52 LMNMKIFVDTDADVRLARRIRRDTVEKGRDIATVLDQYSKFVKPAFDDFILPTKKYADIIIPRGGDNHVAIDLIVQHIRT 131 (222)
Q Consensus 52 ~~D~~Ifvd~d~d~rl~Rri~RD~~~rg~~~~~~~~~~~~~~~p~~~~~i~p~~~~ADlvi~~~~~~~~~~~~~~~~i~~ 131 (222)
..|+.||+++|+++++.|...|+. .+.+++.++. ...|..+.... .++++|+++.+ ++.+.+.|.+
T Consensus 122 ~~d~vi~l~~~~e~~~~Rl~~r~~----~~~~~~~~~~----~~~~~~~~~~~--~~~~~Id~~~~----~~~~~~~i~~ 187 (195)
T 2pbr_A 122 KPDITLLLDIPVDIALRRLKEKNR----FENKEFLEKV----RKGFLELAKEE--ENVVVIDASGE----EEEVFKEILR 187 (195)
T ss_dssp CCSEEEEEECCHHHHHHHHHTTTC----CCCHHHHHHH----HHHHHHHHHHS--TTEEEEETTSC----HHHHHHHHHH
T ss_pred CCCEEEEEeCCHHHHHHHhhccCc----cchHHHHHHH----HHHHHHHHhhC--CCEEEEECCCC----HHHHHHHHHH
Confidence 579999999999999999887653 2233343332 22333322211 34588986433 3444455544
Q ss_pred Hh
Q 027528 132 KL 133 (222)
Q Consensus 132 ~l 133 (222)
.+
T Consensus 188 ~l 189 (195)
T 2pbr_A 188 AL 189 (195)
T ss_dssp HH
T ss_pred HH
Confidence 44
No 53
>1y63_A LMAJ004144AAA protein; structural genomics, protein structure initiative, PSI, SGPP structural genomics of pathogenic protozoa consortium; HET: ADP; 1.70A {Leishmania major} SCOP: c.37.1.1
Probab=94.23 E-value=0.19 Score=39.11 Aligned_cols=36 Identities=14% Similarity=0.137 Sum_probs=25.6
Q ss_pred EEEeccccCCChhhhccCCeEEEEECCHHHHHHHHHhh
Q 027528 36 ILLEGILVFHDSRVRELMNMKIFVDTDADVRLARRIRR 73 (222)
Q Consensus 36 vIvEGi~~l~~~~l~~~~D~~Ifvd~d~d~rl~Rri~R 73 (222)
+++++......+. ...|..||+++|.++++.|...|
T Consensus 86 ~vi~~~~~~~~~~--~~~~~vi~l~~~~e~~~~Rl~~R 121 (184)
T 1y63_A 86 HVVDYHSSELFPE--RWFHMVVVLHTSTEVLFERLTKR 121 (184)
T ss_dssp EEEECSCCTTSCG--GGCSEEEEEECCHHHHHHHHHHT
T ss_pred EEEeCchHhhhhh--ccCCEEEEEECCHHHHHHHHHhC
Confidence 4455554422222 34789999999999999998887
No 54
>3hdt_A Putative kinase; structura genomics, PSI-2, protein structure initiative, midwest CENT structural genomics, MCSG; 2.79A {Clostridium symbiosum atcc 14940}
Probab=94.15 E-value=0.16 Score=41.61 Aligned_cols=73 Identities=21% Similarity=0.156 Sum_probs=45.3
Q ss_pred CeEEEEECCHHHHHHHHHhhcccccCCCHHHHHHHHH---hccccchhhhc--ccc-CCCccEEEcCCCCchhhHHHHHH
Q 027528 54 NMKIFVDTDADVRLARRIRRDTVEKGRDIATVLDQYS---KFVKPAFDDFI--LPT-KKYADIIIPRGGDNHVAIDLIVQ 127 (222)
Q Consensus 54 D~~Ifvd~d~d~rl~Rri~RD~~~rg~~~~~~~~~~~---~~~~p~~~~~i--~p~-~~~ADlvi~~~~~~~~~~~~~~~ 127 (222)
.++|||++|.+.|..|...|. |.+.+++.+... ....|-|..|- .|. ...||++|+.+.-+ ++.+++
T Consensus 138 ~~~VfL~A~~e~r~~Ri~~~~----~~~~~~a~~~I~~~d~~R~~~Y~~ytg~~~~~~~~~dl~IdT~~l~---~eevv~ 210 (223)
T 3hdt_A 138 LIRIFVYTDKVKKVQRVMEVD----CIDEERAKRRIKKIEKERKEYYKYFTGSEWHSMKNYDLPINTTKLT---LEETAE 210 (223)
T ss_dssp EEEEEEECCHHHHHHHHHHHH----TCCHHHHHHHHHHHHHHHHHHHHHHHSSCTTCGGGCSEEEECTTCC---HHHHHH
T ss_pred eEEEEEECCHHHHHHHHHHhc----CCCHHHHHHHHHHHHHHHHHHHHHHcCCCCCCcccCeEEEECCCCC---HHHHHH
Confidence 599999999999999998774 566655543322 23345554332 232 46799999966433 334444
Q ss_pred HHHHHh
Q 027528 128 HIRTKL 133 (222)
Q Consensus 128 ~i~~~l 133 (222)
.|.+.+
T Consensus 211 ~I~~~i 216 (223)
T 3hdt_A 211 LIKAYI 216 (223)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 444444
No 55
>3kb2_A SPBC2 prophage-derived uncharacterized protein YORR; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: G3D; 2.20A {Bacillus subtilis} SCOP: c.37.1.1 PDB: 2axp_A*
Probab=94.05 E-value=0.27 Score=37.11 Aligned_cols=70 Identities=13% Similarity=0.064 Sum_probs=39.7
Q ss_pred CCeEEEEECCHHHHHHHHHhhcccccCCCHHHHHHHHHhccccchhhhccccCCCccEEEcCCCCchhhHHHHHHHHHHH
Q 027528 53 MNMKIFVDTDADVRLARRIRRDTVEKGRDIATVLDQYSKFVKPAFDDFILPTKKYADIIIPRGGDNHVAIDLIVQHIRTK 132 (222)
Q Consensus 53 ~D~~Ifvd~d~d~rl~Rri~RD~~~rg~~~~~~~~~~~~~~~p~~~~~i~p~~~~ADlvi~~~~~~~~~~~~~~~~i~~~ 132 (222)
.|+.||+++|.++.+.|...|. +.....+.+++.. ..|+.... ....++++|+++..+ ++.+.+.|.+.
T Consensus 95 ~~~~i~l~~~~e~~~~R~~~r~---r~~~~~~~~~~~~----~~~~~~~~-~~~~~~~~id~~~~~---~~ev~~~I~~~ 163 (173)
T 3kb2_A 95 KAKVVYLHADPSVIKKRLRVRG---DEYIEGKDIDSIL----ELYREVMS-NAGLHTYSWDTGQWS---SDEIAKDIIFL 163 (173)
T ss_dssp TEEEEEEECCHHHHHHHHHHHS---CSCCCHHHHHHHH----HHHHHHHH-TCSSCEEEEETTTSC---HHHHHHHHHHH
T ss_pred CCEEEEEeCCHHHHHHHHHhcC---CcchhhhHHHHHH----HHHHHHHh-hcCCCEEEEECCCCC---HHHHHHHHHHH
Confidence 5799999999999999988873 2222223333222 23333222 223689999865322 33444444444
Q ss_pred h
Q 027528 133 L 133 (222)
Q Consensus 133 l 133 (222)
+
T Consensus 164 ~ 164 (173)
T 3kb2_A 164 V 164 (173)
T ss_dssp H
T ss_pred H
Confidence 4
No 56
>2ocp_A DGK, deoxyguanosine kinase; protein-nucleotide complex, transferase; HET: DTP; 2.80A {Homo sapiens} SCOP: c.37.1.1
Probab=94.04 E-value=0.092 Score=42.82 Aligned_cols=77 Identities=10% Similarity=0.179 Sum_probs=47.5
Q ss_pred cCCeEEEEECCHHHHHHHHHhhcccccCCCHHHH-HHHHHhccccchhhhcccc---------CCCccEEEcCCCC---c
Q 027528 52 LMNMKIFVDTDADVRLARRIRRDTVEKGRDIATV-LDQYSKFVKPAFDDFILPT---------KKYADIIIPRGGD---N 118 (222)
Q Consensus 52 ~~D~~Ifvd~d~d~rl~Rri~RD~~~rg~~~~~~-~~~~~~~~~p~~~~~i~p~---------~~~ADlvi~~~~~---~ 118 (222)
..|+.||+++|.++++.|...|.. ..+.. ...|...+...|..+..+. .....++|+.+.+ +
T Consensus 149 ~pd~~i~l~~~~~~~~~R~~~R~r-----~~e~~~~~~~~~~v~~~y~~~~~~~~~p~~~~~~~~~~~~~Id~~~~~~~v 223 (241)
T 2ocp_A 149 TLHGFIYLQASPQVCLKRLYQRAR-----EEEKGIELAYLEQLHGQHEAWLIHKTTKLHFEALMNIPVLVLDVNDDFSEE 223 (241)
T ss_dssp CCCEEEEEECCHHHHHHHHHHSCC-----TTTTTCCHHHHHHHHHHHHHHHTSCCSCCCCTTGGGCCEEEEECCSCTTTC
T ss_pred CCCEEEEEECCHHHHHHHHHhcCC-----cccccCCHHHHHHHHHHHHHHHhhccccccccccCCCCEEEEECCCChhhC
Confidence 579999999999999999877742 21111 1123344566777766541 2334566664432 2
Q ss_pred hhhHHHHHHHHHHHh
Q 027528 119 HVAIDLIVQHIRTKL 133 (222)
Q Consensus 119 ~~~~~~~~~~i~~~l 133 (222)
...+..+++.|.+.+
T Consensus 224 ~~~i~~i~~~i~~~l 238 (241)
T 2ocp_A 224 VTKQEDLMREVNTFV 238 (241)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH
Confidence 336677777777665
No 57
>1p5z_B DCK, deoxycytidine kinase; nucleoside kinase, P-loop, ARAC, cytarabine, transferase; HET: AR3 ADP; 1.60A {Homo sapiens} SCOP: c.37.1.1 PDB: 1p60_A* 1p61_B* 1p62_B* 2a7q_A* 2qrn_A* 2qro_A* 3exk_A* 3hp1_A* 2no7_A* 2no1_A* 2no6_A* 2no0_A* 2no9_A* 2noa_A* 2zi5_A* 2zi4_A* 2zi6_A* 2zi7_B* 2zia_A* 3kfx_A* ...
Probab=93.96 E-value=0.39 Score=39.56 Aligned_cols=23 Identities=17% Similarity=0.251 Sum_probs=20.3
Q ss_pred cCCeEEEEECCHHHHHHHHHhhc
Q 027528 52 LMNMKIFVDTDADVRLARRIRRD 74 (222)
Q Consensus 52 ~~D~~Ifvd~d~d~rl~Rri~RD 74 (222)
..|+.||+++|+++.+.|...|.
T Consensus 174 ~pd~vi~L~~~~e~~~~Ri~~R~ 196 (263)
T 1p5z_B 174 ELDGIIYLQATPETCLHRIYLRG 196 (263)
T ss_dssp CCSEEEEEECCHHHHHHHHHHHC
T ss_pred CCCeEEEEECCHHHHHHHHHhcC
Confidence 46899999999999999988774
No 58
>2c95_A Adenylate kinase 1; transferase, AP4A, nucleotide kinase, transferase ATP-bindi; HET: B4P; 1.71A {Homo sapiens} PDB: 1z83_A* 3adk_A
Probab=93.76 E-value=0.14 Score=39.80 Aligned_cols=43 Identities=16% Similarity=0.213 Sum_probs=30.7
Q ss_pred CCcEEEEeccccCCChhh------hccCCeEEEEECCHHHHHHHHHhhcc
Q 027528 32 PSDVILLEGILVFHDSRV------RELMNMKIFVDTDADVRLARRIRRDT 75 (222)
Q Consensus 32 ~~~vvIvEGi~~l~~~~l------~~~~D~~Ifvd~d~d~rl~Rri~RD~ 75 (222)
....+|++|..... ... ....|+.||+++|.++++.|...|+.
T Consensus 87 ~~~~vi~d~~~~~~-~~~~~~~~~~~~~~~vi~l~~~~e~~~~R~~~R~~ 135 (196)
T 2c95_A 87 TSKGFLIDGYPREV-QQGEEFERRIGQPTLLLYVDAGPETMTQRLLKRGE 135 (196)
T ss_dssp TCSCEEEESCCCSH-HHHHHHHHHTCCCSEEEEEECCHHHHHHHHHHHHT
T ss_pred cCCcEEEeCCCCCH-HHHHHHHHhcCCCCEEEEEECCHHHHHHHHHccCC
Confidence 34688999943221 111 13478999999999999999888863
No 59
>2plr_A DTMP kinase, probable thymidylate kinase; TMP-binding, ATP-binding, structural GEN NPPSFA; HET: 1PE PGE EPE PG4; 1.60A {Sulfolobus tokodaii}
Probab=93.72 E-value=0.3 Score=38.14 Aligned_cols=60 Identities=15% Similarity=0.324 Sum_probs=36.3
Q ss_pred CCeEEEEECCHHHHHHHHH-hhccccc---CCC-------HHHHHHHHHhccccchhhhccccCCCccEEEcCCC
Q 027528 53 MNMKIFVDTDADVRLARRI-RRDTVEK---GRD-------IATVLDQYSKFVKPAFDDFILPTKKYADIIIPRGG 116 (222)
Q Consensus 53 ~D~~Ifvd~d~d~rl~Rri-~RD~~~r---g~~-------~~~~~~~~~~~~~p~~~~~i~p~~~~ADlvi~~~~ 116 (222)
.|+.||+++|.++++.|.. .|....+ |.+ .+.. ..|.+...+.|..+... +++++|+++.
T Consensus 122 ~~~vi~l~~~~e~~~~Rl~~~R~~~~~~~~g~~~~~~~d~~e~~-~~~~~r~~~~~~~~~~~---~~~~~Id~~~ 192 (213)
T 2plr_A 122 PDITFYIRVSPDIALERIKKSKRKIKPQEAGADIFPGLSPEEGF-LKYQGLITEVYDKLVKD---ENFIVIDGTK 192 (213)
T ss_dssp CSEEEEEECCHHHHHHHHHHTTCCCCTTTTTTTTCTTSCHHHHH-HHHHHHHHHHHHHHTTT---TTCEEEETTS
T ss_pred CCEEEEEeCCHHHHHHHHhcccccccccccccccccccchhhhH-HHHHHHHHHHHHHHHhh---CCEEEEECCC
Confidence 6899999999999999988 7752111 111 1221 33444445555554322 2788998653
No 60
>3a4m_A L-seryl-tRNA(SEC) kinase; P-loop motif, walker A motif, ATP binding motif, ATP- binding, nucleotide-binding, transferase; HET: ADP; 1.79A {Methanocaldococcus jannaschii} PDB: 3a4l_A* 3a4n_A 3am1_A* 3add_A* 3adc_A* 3adb_A*
Probab=93.54 E-value=1.1 Score=36.80 Aligned_cols=89 Identities=18% Similarity=0.247 Sum_probs=53.8
Q ss_pred cEEEEeccccCCC--hhhhc------cCCeEEEEECCHHHHHHHHHhhcccccCCCHHHHHHHHHhccccchhhhccccC
Q 027528 34 DVILLEGILVFHD--SRVRE------LMNMKIFVDTDADVRLARRIRRDTVEKGRDIATVLDQYSKFVKPAFDDFILPTK 105 (222)
Q Consensus 34 ~vvIvEGi~~l~~--~~l~~------~~D~~Ifvd~d~d~rl~Rri~RD~~~rg~~~~~~~~~~~~~~~p~~~~~i~p~~ 105 (222)
..+|++|.+.... ..+.. .-+..||+++|.++++.|...|. +..+.+.+...+.. |-.|..
T Consensus 73 ~~vIiD~~~~~~~~~~~l~~~a~~~~~~~~vi~l~~~~e~~~~R~~~R~---~~~~~~~l~~~~~~--------~e~~~~ 141 (260)
T 3a4m_A 73 YWVIVDDTNYYNSMRRDLINIAKKYNKNYAIIYLKASLDVLIRRNIERG---EKIPNEVIKKMYEK--------FDEPGK 141 (260)
T ss_dssp SEEEECSCCCSHHHHHHHHHHHHHTTCEEEEEEEECCHHHHHHHHHHTT---CSSCHHHHHHHHHH--------CCCTTS
T ss_pred CEEEEeCCcccHHHHHHHHHHHHHcCCCEEEEEEeCCHHHHHHHHHhCC---CCCCHHHHHHHHHH--------hcCccc
Confidence 7899999654321 12222 23789999999999999988874 22333333232222 333332
Q ss_pred ----CCccEEEcCCCCchhhHHHHHHHHHHHhcc
Q 027528 106 ----KYADIIIPRGGDNHVAIDLIVQHIRTKLGQ 135 (222)
Q Consensus 106 ----~~ADlvi~~~~~~~~~~~~~~~~i~~~l~~ 135 (222)
..++++|+.+.. ..++.+.+.|.+.+..
T Consensus 142 ~~~~~~~~~~Id~~~~--~~~~ei~~~I~~~l~~ 173 (260)
T 3a4m_A 142 KYKWDEPFLIIDTTKD--IDFNEIAKKLIEKSKE 173 (260)
T ss_dssp SCGGGCCSEEEETTSC--CCHHHHHHHHHHHHTS
T ss_pred cCCCCCCEEEEeCCCC--CCHHHHHHHHHhcccC
Confidence 358999986642 2356677777777653
No 61
>1zak_A Adenylate kinase; ATP:AMP-phosphotransferase, transferase; HET: AP5; 3.50A {Zea mays} SCOP: c.37.1.1 g.41.2.1
Probab=93.53 E-value=0.16 Score=40.64 Aligned_cols=22 Identities=18% Similarity=0.315 Sum_probs=19.7
Q ss_pred CCeEEEEECCHHHHHHHHHhhc
Q 027528 53 MNMKIFVDTDADVRLARRIRRD 74 (222)
Q Consensus 53 ~D~~Ifvd~d~d~rl~Rri~RD 74 (222)
.|+.||+++|.++.+.|...|.
T Consensus 109 ~~~vi~L~~~~~~~~~R~~~r~ 130 (222)
T 1zak_A 109 PDTFILLDVPDELLVERVVGRR 130 (222)
T ss_dssp CSEEEEEECCHHHHHHHHTTEE
T ss_pred CCEEEEEECCHHHHHHHHHcCC
Confidence 4899999999999999988774
No 62
>1zuh_A Shikimate kinase; alpha-beta protein, transferase; 1.80A {Helicobacter pylori} PDB: 1zui_A* 3hr7_A 3muf_A* 3mrs_A 3n2e_A*
Probab=93.38 E-value=0.05 Score=41.61 Aligned_cols=67 Identities=12% Similarity=0.313 Sum_probs=38.5
Q ss_pred CCeEEEEECCHHHHHHHHHhhcccccC-CC-HHHHHHHHHhccccchhhhccccCCCccEEEcCCCCchhhHHHHHHHHH
Q 027528 53 MNMKIFVDTDADVRLARRIRRDTVEKG-RD-IATVLDQYSKFVKPAFDDFILPTKKYADIIIPRGGDNHVAIDLIVQHIR 130 (222)
Q Consensus 53 ~D~~Ifvd~d~d~rl~Rri~RD~~~rg-~~-~~~~~~~~~~~~~p~~~~~i~p~~~~ADlvi~~~~~~~~~~~~~~~~i~ 130 (222)
.|..||+++|.++++.|...|....|+ .+ .+.+...|.. ..|.| ...||++|+++. .++.+.+.|.
T Consensus 97 ~~~vi~l~~~~e~~~~Rl~~r~~~~r~~~~~~~~~~~~~~~-r~~~~-------~~~a~~~Id~~~----~~e~~~~~I~ 164 (168)
T 1zuh_A 97 LGTTFYLKMDFETLIKRLNQKEREKRPLLNNLTQAKELFEK-RQALY-------EKNASFIIDARG----GLNNSLKQVL 164 (168)
T ss_dssp SEEEEEEECCHHHHHHHHCC--------CCTTHHHHHHHHH-HHHHH-------HHTCSEEEEGGG----CHHHHHHHHH
T ss_pred CCEEEEEECCHHHHHHHHhccCCCCCCCccCHHHHHHHHHH-HHHHH-------HHHCCEEEECCC----CHHHHHHHHH
Confidence 689999999999999998777210111 11 3444444443 23322 245899998653 3445555554
Q ss_pred H
Q 027528 131 T 131 (222)
Q Consensus 131 ~ 131 (222)
+
T Consensus 165 ~ 165 (168)
T 1zuh_A 165 Q 165 (168)
T ss_dssp H
T ss_pred H
Confidence 4
No 63
>2rhm_A Putative kinase; P-loop containing nucleoside triphosphate hydrolases fold, S genomics, joint center for structural genomics, JCSG; HET: MSE; 1.70A {Chloroflexus aurantiacus}
Probab=93.27 E-value=0.11 Score=40.29 Aligned_cols=98 Identities=16% Similarity=0.190 Sum_probs=54.1
Q ss_pred CCcEEEEeccccCCC--hh---hhc---cCCeEEEEECCHHHHHHHHHhhccc-cc--CCCHHHHHH--HHHhccccchh
Q 027528 32 PSDVILLEGILVFHD--SR---VRE---LMNMKIFVDTDADVRLARRIRRDTV-EK--GRDIATVLD--QYSKFVKPAFD 98 (222)
Q Consensus 32 ~~~vvIvEGi~~l~~--~~---l~~---~~D~~Ifvd~d~d~rl~Rri~RD~~-~r--g~~~~~~~~--~~~~~~~p~~~ 98 (222)
....+|++|.+.... .. +.. .-++.||+++|.++.+.|...|... +| +....+... ++... +.
T Consensus 76 ~g~~vi~d~~~~~~~~~~~~~~l~~~~~~~~~~v~l~~~~e~~~~R~~~R~~~~~r~~~~~~~~~~~~~~~~~~----~~ 151 (193)
T 2rhm_A 76 SGQSLIMESNFRVDLDTERMQNLHTIAPFTPIQIRCVASGDVLVERILSRIAQGARHPGHCDDRSPADLELVRS----RG 151 (193)
T ss_dssp TTCCEEEEECCCHHHHHHHHHHHHHHSCCEEEEEEEECCHHHHHHHHHHHHHTTCC--------CHHHHHHHHH----SC
T ss_pred CCCeEEEecCCCCHHHHHHHHHHHHhcCCeEEEEEEeCCHHHHHHHHHHhcCccccCcccccCccCcchhhHHH----Hh
Confidence 345789999873110 01 221 2358999999999999998888531 12 111111111 12111 22
Q ss_pred hhcccc-CCCccEEEcCCCCchhhHHHHHHHHHHHhc
Q 027528 99 DFILPT-KKYADIIIPRGGDNHVAIDLIVQHIRTKLG 134 (222)
Q Consensus 99 ~~i~p~-~~~ADlvi~~~~~~~~~~~~~~~~i~~~l~ 134 (222)
. ..|. ...++++|+.+.......+.+++.|.+.|.
T Consensus 152 ~-~~~~~~~~~~~~Idt~~~~~~~~~~i~~~i~~~l~ 187 (193)
T 2rhm_A 152 D-IPPLPLGGPLLTVDTTFPEQIDMNAIVQWVRQHLQ 187 (193)
T ss_dssp C-CCCCCCCSCEEEEECSSGGGCCHHHHHHHHHHHHH
T ss_pred c-CCCccCCCCEEEEeCCCCcccCHHHHHHHHHHHHH
Confidence 2 2333 236899998765444456677778877765
No 64
>2cdn_A Adenylate kinase; phosphoryl transfer, associative mechanism, ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase; HET: ADP; 1.9A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1p4s_A
Probab=93.27 E-value=0.25 Score=38.77 Aligned_cols=71 Identities=14% Similarity=0.188 Sum_probs=42.7
Q ss_pred cCCeEEEEECCHHHHHHHHHhhcccccCCCHHHHHHH---HHhccccchhhhccccCCCccEEEcCCCCchhhHHHHHHH
Q 027528 52 LMNMKIFVDTDADVRLARRIRRDTVEKGRDIATVLDQ---YSKFVKPAFDDFILPTKKYADIIIPRGGDNHVAIDLIVQH 128 (222)
Q Consensus 52 ~~D~~Ifvd~d~d~rl~Rri~RD~~~rg~~~~~~~~~---~~~~~~p~~~~~i~p~~~~ADlvi~~~~~~~~~~~~~~~~ 128 (222)
..|+.||+++|.++++.|...|... ..+.+.+.++ |.....|.+..| ..++++|+++.. ++.+.+.
T Consensus 126 ~~~~vi~l~~~~e~~~~Rl~~R~r~--~~~~e~~~~r~~~~~~~~~~~~~~~-----~~~~~~Id~~~~----~eev~~~ 194 (201)
T 2cdn_A 126 DIDAVLEFRVSEEVLLERLKGRGRA--DDTDDVILNRMKVYRDETAPLLEYY-----RDQLKTVDAVGT----MDEVFAR 194 (201)
T ss_dssp CCCEEEEEECCHHHHHHHHHHHCCT--TCSHHHHHHHHHHHHHHTTTHHHHT-----TTTEEEEECCSC----HHHHHHH
T ss_pred CCCEEEEEECCHHHHHHHHHcCCCC--CCCHHHHHHHHHHHHHhhHHHHHHh-----cCcEEEEeCCCC----HHHHHHH
Confidence 3689999999999999999888411 1234444333 333233333333 457889986422 4455556
Q ss_pred HHHHh
Q 027528 129 IRTKL 133 (222)
Q Consensus 129 i~~~l 133 (222)
|.+.+
T Consensus 195 I~~~l 199 (201)
T 2cdn_A 195 ALRAL 199 (201)
T ss_dssp HHHHT
T ss_pred HHHHH
Confidence 65554
No 65
>3iij_A Coilin-interacting nuclear ATPase protein; alpha and beta proteins (A/B), protein binding, transferase, phosphotransferase; HET: ADP; 1.76A {Homo sapiens} SCOP: c.37.1.1 PDB: 3iik_A 3iil_A* 3iim_A* 1rkb_A
Probab=93.26 E-value=0.41 Score=36.76 Aligned_cols=23 Identities=22% Similarity=0.307 Sum_probs=20.6
Q ss_pred cCCeEEEEECCHHHHHHHHHhhc
Q 027528 52 LMNMKIFVDTDADVRLARRIRRD 74 (222)
Q Consensus 52 ~~D~~Ifvd~d~d~rl~Rri~RD 74 (222)
..|..||+++|.++++.|...|.
T Consensus 96 ~~~~vi~L~~~~e~l~~R~~~r~ 118 (180)
T 3iij_A 96 WFHIVFVLRTDTNVLYERLETRG 118 (180)
T ss_dssp GCSEEEEEECCHHHHHHHHHHTT
T ss_pred cCCEEEEEECCHHHHHHHHHHcC
Confidence 47899999999999999988874
No 66
>2j41_A Guanylate kinase; GMP, GMK, transferase, ATP-binding, nucleotide- binding; HET: 5GP; 1.9A {Staphylococcus aureus}
Probab=92.96 E-value=0.25 Score=38.55 Aligned_cols=87 Identities=13% Similarity=0.205 Sum_probs=35.9
Q ss_pred CCcEEEEeccccCCChhhhccC-C-eEEEEE-CCHHHHHHHHHhhcccccCCCHHHHHHHHHhccccchhhhccccCCCc
Q 027528 32 PSDVILLEGILVFHDSRVRELM-N-MKIFVD-TDADVRLARRIRRDTVEKGRDIATVLDQYSKFVKPAFDDFILPTKKYA 108 (222)
Q Consensus 32 ~~~vvIvEGi~~l~~~~l~~~~-D-~~Ifvd-~d~d~rl~Rri~RD~~~rg~~~~~~~~~~~~~~~p~~~~~i~p~~~~A 108 (222)
....+|++|.+... ..++..+ | ..+|+. ++.+++..|...|+ +.+.+++.+++.. ..+... ....|
T Consensus 96 ~g~~vv~d~~~~~~-~~~~~~~~~~~~i~~~~~~~~~~~~Rl~~R~----~~~~~~~~~rl~~-~~~~~~-----~~~~~ 164 (207)
T 2j41_A 96 EGHDVFLEIEVEGA-KQVRKKFPDALFIFLAPPSLEHLRERLVGRG----TESDEKIQSRINE-ARKEVE-----MMNLY 164 (207)
T ss_dssp TTCEEEEECCGGGH-HHHHHHCTTSEEEEEECCC--------------------------------CGGG-----GGGGC
T ss_pred cCCeEEEEECHHHH-HHHHHhcCCeEEEEEECCCHHHHHHHHHhcC----CCCHHHHHHHHHH-HHHHHh-----ccccC
Confidence 45789999977643 4556555 7 455555 34678888777775 2344444444433 233221 24578
Q ss_pred cEEEcCCCCchhhHHHHHHHHHHHhc
Q 027528 109 DIIIPRGGDNHVAIDLIVQHIRTKLG 134 (222)
Q Consensus 109 Dlvi~~~~~~~~~~~~~~~~i~~~l~ 134 (222)
|++|.|+ + ++.+.+.|.+.+.
T Consensus 165 d~vI~n~-~----~e~~~~~i~~~l~ 185 (207)
T 2j41_A 165 DYVVVND-E----VELAKNRIQCIVE 185 (207)
T ss_dssp SEEEECS-S----HHHHHHHHHHHHH
T ss_pred CEEEECC-C----HHHHHHHHHHHHH
Confidence 9999865 2 4455555555553
No 67
>1nks_A Adenylate kinase; thermophilic, transferase; HET: AMP ADP; 2.57A {Sulfolobus acidocaldarius} SCOP: c.37.1.1
Probab=92.92 E-value=0.32 Score=37.36 Aligned_cols=42 Identities=14% Similarity=0.276 Sum_probs=28.6
Q ss_pred CCCcEEEEeccccCCC----------hhhhc-cCCeEEEEECCHHHHHHHHHh
Q 027528 31 NPSDVILLEGILVFHD----------SRVRE-LMNMKIFVDTDADVRLARRIR 72 (222)
Q Consensus 31 ~~~~vvIvEGi~~l~~----------~~l~~-~~D~~Ifvd~d~d~rl~Rri~ 72 (222)
.....||++|...... ..++. ..|..||+++|+++++.||+.
T Consensus 83 ~~~~~vi~d~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~l~~~~~~~~~rr~~ 135 (194)
T 1nks_A 83 GGEGYLFIDTHAVIRTPSGYLPGLPSYVITEINPSVIFLLEADPKIILSRQKR 135 (194)
T ss_dssp TCSSEEEEEECSEEEETTEEEESSCHHHHHHHCCSEEEEEECCHHHHHHHHHH
T ss_pred cCCCEEEECCchhhccccccccCCCHHHHHhcCCCEEEEEeCCHHHHHHHHHh
Confidence 4567899998532111 11222 268999999999999988774
No 68
>2z0h_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics, NPPSFA; HET: ADP TYD; 2.10A {Thermotoga maritima} PDB: 3hjn_A*
Probab=92.71 E-value=0.12 Score=40.09 Aligned_cols=70 Identities=11% Similarity=0.240 Sum_probs=38.4
Q ss_pred cCCeEEEEECCHHHHHHHHHhhcccccCCCHHHHHHHHHhccccchhhhccccCCCccEEEcCCCCchhhHHHHHHHHHH
Q 027528 52 LMNMKIFVDTDADVRLARRIRRDTVEKGRDIATVLDQYSKFVKPAFDDFILPTKKYADIIIPRGGDNHVAIDLIVQHIRT 131 (222)
Q Consensus 52 ~~D~~Ifvd~d~d~rl~Rri~RD~~~rg~~~~~~~~~~~~~~~p~~~~~i~p~~~~ADlvi~~~~~~~~~~~~~~~~i~~ 131 (222)
..|+.||+++|+++++.|...||. .+.++++++ ....|...... .....++|+++.+ ++.+.+.|.+
T Consensus 121 ~~d~vi~l~~~~e~~~~Rl~~R~~----~~~~~~~~~----~~~~~~~~~~~-~~~~~~~Id~~~~----~e~~~~~i~~ 187 (197)
T 2z0h_A 121 IPDLTFYIDVDVETALKRKGELNR----FEKREFLER----VREGYLVLARE-HPERIVVLDGKRS----IEEIHRDVVR 187 (197)
T ss_dssp CCSEEEEEECCHHHHHHHC---CC----CCCHHHHHH----HHHHHHHHHHH-CTTTEEEEETTSC----HHHHHHHHHH
T ss_pred CCCEEEEEeCCHHHHHHHHhccCc----ccHHHHHHH----HHHHHHHHHHh-CCCCEEEEeCCCC----HHHHHHHHHH
Confidence 368999999999999999999853 222344333 23333332221 1334567875433 4455555555
Q ss_pred Hhc
Q 027528 132 KLG 134 (222)
Q Consensus 132 ~l~ 134 (222)
.+.
T Consensus 188 ~l~ 190 (197)
T 2z0h_A 188 EVK 190 (197)
T ss_dssp HTT
T ss_pred HHH
Confidence 554
No 69
>4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme function initiative, EFI, STRU genomics, transferase; 1.60A {Janibacter SP}
Probab=92.67 E-value=0.32 Score=38.29 Aligned_cols=67 Identities=13% Similarity=0.072 Sum_probs=42.5
Q ss_pred eEEEEECCHHHHHHHHHhhcccccCCCHHHHHHHHHhccccchhhhccccCCCccEEEcCCCCchhhHHHHHHHHHHHhc
Q 027528 55 MKIFVDTDADVRLARRIRRDTVEKGRDIATVLDQYSKFVKPAFDDFILPTKKYADIIIPRGGDNHVAIDLIVQHIRTKLG 134 (222)
Q Consensus 55 ~~Ifvd~d~d~rl~Rri~RD~~~rg~~~~~~~~~~~~~~~p~~~~~i~p~~~~ADlvi~~~~~~~~~~~~~~~~i~~~l~ 134 (222)
..||+++|.++++.|...|+.. ..+.+.+..+|.. +..+....||++|+++. .++.+.+.|.+.|.
T Consensus 127 ~vv~l~~~~e~l~~Rl~~R~~~--~~~~~~l~~~~~~--------~~~~~~~~~~~~Id~~~----~~~e~~~~I~~~l~ 192 (200)
T 4eun_A 127 DFLHLDGPAEVIKGRMSKREGH--FMPASLLQSQLAT--------LEALEPDESGIVLDLRQ----PPEQLIERALTWLD 192 (200)
T ss_dssp EEEEEECCHHHHHHHHTTCSCC--SSCGGGHHHHHHH--------CCCCCTTSCEEEEETTS----CHHHHHHHHHHHHC
T ss_pred EEEEEeCCHHHHHHHHHhcccC--CCCHHHHHHHHHH--------hCCCCCCCCeEEEECCC----CHHHHHHHHHHHHH
Confidence 6799999999999998888642 2233333343332 22234456899998653 35566667766665
Q ss_pred c
Q 027528 135 Q 135 (222)
Q Consensus 135 ~ 135 (222)
.
T Consensus 193 ~ 193 (200)
T 4eun_A 193 I 193 (200)
T ss_dssp C
T ss_pred h
Confidence 3
No 70
>4tmk_A Protein (thymidylate kinase); ATP:DTMP phosphotransferase, transferase; HET: T5A; 1.98A {Escherichia coli} SCOP: c.37.1.1 PDB: 5tmp_A*
Probab=92.46 E-value=0.17 Score=41.09 Aligned_cols=77 Identities=12% Similarity=0.165 Sum_probs=42.5
Q ss_pred cCCeEEEEECCHHHHHHHHHhhcccccCCCHHHHHHHHHhccccchhhhccccCCCccEEEcCCCCchhhHHHHHHHHHH
Q 027528 52 LMNMKIFVDTDADVRLARRIRRDTVEKGRDIATVLDQYSKFVKPAFDDFILPTKKYADIIIPRGGDNHVAIDLIVQHIRT 131 (222)
Q Consensus 52 ~~D~~Ifvd~d~d~rl~Rri~RD~~~rg~~~~~~~~~~~~~~~p~~~~~i~p~~~~ADlvi~~~~~~~~~~~~~~~~i~~ 131 (222)
.-|+.||+|+|+++.+.|...|....+ .+.--..|...+...|..+.... ..-++|+.+..-+...+.+.+.+.+
T Consensus 132 ~PDl~i~Ldv~~e~~~~Ri~~R~~~dr---~E~~~~~f~~rv~~~y~~la~~~--~~~~vIDa~~s~eeV~~~I~~~l~~ 206 (213)
T 4tmk_A 132 RPDLTLYLDVTPEVGLKRARARGELDR---IEQESFDFFNRTRARYLELAAQD--KSIHTIDATQPLEAVMDAIRTTVTH 206 (213)
T ss_dssp CCSEEEEEECCHHHHHHHHHHHSSCCT---TTTSCHHHHHHHHHHHHHHHHTC--TTEEEEETTSCHHHHHHHHHHHHHH
T ss_pred CCCEEEEEeCCHHHHHHHHHhcCCccc---hhhhHHHHHHHHHHHHHHHHHHC--CcEEEECCCCCHHHHHHHHHHHHHH
Confidence 479999999999999999988842111 11101123344555666554321 2346677543322223344444444
Q ss_pred Hh
Q 027528 132 KL 133 (222)
Q Consensus 132 ~l 133 (222)
.|
T Consensus 207 ~l 208 (213)
T 4tmk_A 207 WV 208 (213)
T ss_dssp HH
T ss_pred HH
Confidence 44
No 71
>3a00_A Guanylate kinase, GMP kinase; domain movement, dimerization, acetylation, ATP-binding, nucleotide-binding, phosphoprotein, transferase; 1.80A {Saccharomyces cerevisiae} PDB: 1ex6_A* 1ex7_A 1gky_A* 2zzz_A 3sqk_A 4f4j_A 2zzy_A
Probab=92.37 E-value=0.043 Score=43.06 Aligned_cols=85 Identities=14% Similarity=0.169 Sum_probs=30.3
Q ss_pred CCcEEEE----eccccCCChhhhccCCeEEEEECCH-HHHHHHHHhhcccccCCCHHHHHHHHHhccccchhhhccccCC
Q 027528 32 PSDVILL----EGILVFHDSRVRELMNMKIFVDTDA-DVRLARRIRRDTVEKGRDIATVLDQYSKFVKPAFDDFILPTKK 106 (222)
Q Consensus 32 ~~~vvIv----EGi~~l~~~~l~~~~D~~Ifvd~d~-d~rl~Rri~RD~~~rg~~~~~~~~~~~~~~~p~~~~~i~p~~~ 106 (222)
....+|+ +|.-.+.. ....-...|||.+|. +....|...| |.+.++.+++........ ..+.. ..
T Consensus 91 ~g~~~il~~~~~g~~~l~~--~~~~~~~~i~i~~p~~~~l~~Rl~~R-----g~~~~~~i~~rl~~~~~~-~~~~~--~~ 160 (186)
T 3a00_A 91 SGKTCILDIDMQGVKSVKA--IPELNARFLFIAPPSVEDLKKRLEGR-----GTETEESINKRLSAAQAE-LAYAE--TG 160 (186)
T ss_dssp TTCEEEEECCHHHHHHHHT--CGGGCCEEEEEECSCC-----------------------------------------CC
T ss_pred cCCeEEEEEcHHHHHHHHH--hcCCCeEEEEEECcCHHHHHHHHHhc-----CCCCHHHHHHHHHHHHHH-HHhhc--cc
Confidence 4567777 55444322 011234669999987 5555554444 555544454444333322 12221 46
Q ss_pred CccEEEcCCCCchhhHHHHHH
Q 027528 107 YADIIIPRGGDNHVAIDLIVQ 127 (222)
Q Consensus 107 ~ADlvi~~~~~~~~~~~~~~~ 127 (222)
.+|.+|.|. +.+.+.+.+.+
T Consensus 161 ~~d~vi~nd-~~~~a~~~l~~ 180 (186)
T 3a00_A 161 AHDKVIVND-DLDKAYKELKD 180 (186)
T ss_dssp CCSEEEECS-SHHHHHHHHHH
T ss_pred CCcEEEECc-CHHHHHHHHHH
Confidence 789999876 43344444333
No 72
>4hlc_A DTMP kinase, thymidylate kinase; TMK, MRSA, pipiridine, transfera transferase inhibitor complex; HET: T05; 1.55A {Staphylococcus aureus subsp} PDB: 2cck_A 4gfd_A* 4gsy_A* 4hdc_A* 4hej_A* 2ccj_A* 4hld_A* 2ccg_A*
Probab=92.31 E-value=0.4 Score=38.57 Aligned_cols=79 Identities=14% Similarity=0.137 Sum_probs=40.6
Q ss_pred CCeEEEEECCHHHHHHHHHhhcccccCCCHHHHHHHHHhccccchhhhccccCCCccEEEcCCCCchhhHHHHHHHHHHH
Q 027528 53 MNMKIFVDTDADVRLARRIRRDTVEKGRDIATVLDQYSKFVKPAFDDFILPTKKYADIIIPRGGDNHVAIDLIVQHIRTK 132 (222)
Q Consensus 53 ~D~~Ifvd~d~d~rl~Rri~RD~~~rg~~~~~~~~~~~~~~~p~~~~~i~p~~~~ADlvi~~~~~~~~~~~~~~~~i~~~ 132 (222)
-|+.||+|+|+++.+.|...|....--.+.+ - ..|...++-+|.++......+ =++|+.+..-+...+.+.+.|.+.
T Consensus 125 PDl~i~Ld~~~e~~~~Ri~~r~~~~dr~e~~-~-~~f~~~v~~~Y~~l~~~~~~~-~~~IDa~~~~e~V~~~i~~~i~~~ 201 (205)
T 4hlc_A 125 PDLTIYLNVSAEVGRERIIKNSRDQNRLDQE-D-LKFHEKVIEGYQEIIHNESQR-FKSVNADQPLENVVEDTYQTIIKY 201 (205)
T ss_dssp CSEEEEEECCHHHHHHHHHC-------CCHH-H-HHHHHHHHHHHHHHHHSCCTT-EEEEETTSCHHHHHHHHHHHHHHH
T ss_pred CCEEeeeCCCHHHHHHHHHhcCCcccchhcc-C-HHHHHHHHHHHHHHHHhCCCC-EEEEECCCCHHHHHHHHHHHHHHH
Confidence 4899999999999999987764211001111 1 224444666676655432222 245664433222234455555555
Q ss_pred hc
Q 027528 133 LG 134 (222)
Q Consensus 133 l~ 134 (222)
|+
T Consensus 202 L~ 203 (205)
T 4hlc_A 202 LE 203 (205)
T ss_dssp HC
T ss_pred Hh
Confidence 53
No 73
>3lv8_A DTMP kinase, thymidylate kinase; structural genomics, in diseases, center for structural genomics of infectious DISE ATP-binding; HET: ADP TMP TYD; 1.80A {Vibrio cholerae o1 biovar eltor} PDB: 3n2i_A*
Probab=92.21 E-value=0.11 Score=42.98 Aligned_cols=78 Identities=10% Similarity=0.143 Sum_probs=39.1
Q ss_pred cCCeEEEEECCHHHHHHHHHhhcccccCCCHHHHHHHHHhccccchhhhccccCCCccEEEcCCCCchhhHHHHHHHHHH
Q 027528 52 LMNMKIFVDTDADVRLARRIRRDTVEKGRDIATVLDQYSKFVKPAFDDFILPTKKYADIIIPRGGDNHVAIDLIVQHIRT 131 (222)
Q Consensus 52 ~~D~~Ifvd~d~d~rl~Rri~RD~~~rg~~~~~~~~~~~~~~~p~~~~~i~p~~~~ADlvi~~~~~~~~~~~~~~~~i~~ 131 (222)
..|+.||+|+|+++.+.|...|....+-.. + -..|...+...|..+..... . .++|+++..-+...+.+.+.|.+
T Consensus 154 ~PDlvi~Ldv~~e~~~~Ri~~R~~~dr~E~-~--~~~~~~rv~~~y~~la~~~~-~-~~vIDa~~sieeV~~~I~~~l~~ 228 (236)
T 3lv8_A 154 KPDLTLYLDIDPKLGLERARGRGELDRIEK-M--DISFFERARERYLELANSDD-S-VVMIDAAQSIEQVTADIRRALQD 228 (236)
T ss_dssp CCSEEEEEECCHHHHHHC-----CCCTTTT-S--CHHHHHHHHHHHHHHHHHCT-T-EEEEETTSCHHHHHHHHHHHHHH
T ss_pred CCCEEEEEeCCHHHHHHHHHhcCCcchhhh-h--HHHHHHHHHHHHHHHHHHCC-C-EEEEeCCCCHHHHHHHHHHHHHH
Confidence 579999999999999999888842111111 0 01233334445555443222 2 67788654433333444555555
Q ss_pred Hhc
Q 027528 132 KLG 134 (222)
Q Consensus 132 ~l~ 134 (222)
.|.
T Consensus 229 ~l~ 231 (236)
T 3lv8_A 229 WLS 231 (236)
T ss_dssp HHT
T ss_pred HHH
Confidence 543
No 74
>4eaq_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, MTBI, transferase; HET: ATM; 1.85A {Staphylococcus aureus subsp} PDB: 4dwj_A* 4f4i_A
Probab=91.52 E-value=0.52 Score=38.39 Aligned_cols=79 Identities=14% Similarity=0.112 Sum_probs=41.9
Q ss_pred cCCeEEEEECCHHHHHHHHHhhcccccCCCHHHHHHHHHhccccchhhhccccCCCccEEEcCCCCchhhHHHHHHHHHH
Q 027528 52 LMNMKIFVDTDADVRLARRIRRDTVEKGRDIATVLDQYSKFVKPAFDDFILPTKKYADIIIPRGGDNHVAIDLIVQHIRT 131 (222)
Q Consensus 52 ~~D~~Ifvd~d~d~rl~Rri~RD~~~rg~~~~~~~~~~~~~~~p~~~~~i~p~~~~ADlvi~~~~~~~~~~~~~~~~i~~ 131 (222)
..|+.||+++|+++.+.|...|... .++.... -..|...+...|....... ...-++|+++..-+...+.+.+.|.+
T Consensus 148 ~pd~vi~L~~~~e~~~~R~~~R~~~-~dr~e~~-~~~~~~rv~~~y~~l~~~~-~~~~~vIDa~~s~eev~~~I~~~l~~ 224 (229)
T 4eaq_A 148 YPDLTIYLNVSAEVGRERIIKNSRD-QNRLDQE-DLKFHEKVIEGYQEIIHNE-SQRFKSVNADQPLENVVEDTYQTIIK 224 (229)
T ss_dssp CCSEEEEEECCHHHHHHHHHHC------CCCHH-HHHHHHHHHHHHHHHTTTC-TTTEEEEETTSCHHHHHHHHHHHHHH
T ss_pred CCCEEEEEeCCHHHHHHHHHhcCCC-ccchhhh-hHHHHHHHHHHHHHHHHhC-CCCEEEEeCCCCHHHHHHHHHHHHHH
Confidence 4689999999999999998887421 1221111 1223334455555543322 23456777654433333445555544
Q ss_pred Hh
Q 027528 132 KL 133 (222)
Q Consensus 132 ~l 133 (222)
.|
T Consensus 225 ~l 226 (229)
T 4eaq_A 225 YL 226 (229)
T ss_dssp HH
T ss_pred Hh
Confidence 44
No 75
>3tr0_A Guanylate kinase, GMP kinase; purines, pyrimidines, nucleosides, nucleotides, transferase; HET: 5GP; 1.85A {Coxiella burnetii}
Probab=91.29 E-value=0.37 Score=37.56 Aligned_cols=86 Identities=21% Similarity=0.258 Sum_probs=46.4
Q ss_pred CCcEEEEeccccCCChhhhccCC--eEEEEECC-HHHHHHHHHhhcccccCCCHHHHHHHHHhccccchhhhccccCCCc
Q 027528 32 PSDVILLEGILVFHDSRVRELMN--MKIFVDTD-ADVRLARRIRRDTVEKGRDIATVLDQYSKFVKPAFDDFILPTKKYA 108 (222)
Q Consensus 32 ~~~vvIvEGi~~l~~~~l~~~~D--~~Ifvd~d-~d~rl~Rri~RD~~~rg~~~~~~~~~~~~~~~p~~~~~i~p~~~~A 108 (222)
....++++|-.... ..++..++ ..||+.++ .++...|...|+. .+.+.+.++... ..+.. .....|
T Consensus 96 ~g~~vi~d~~~~~~-~~~~~~~~~~~~v~~~~~~~e~l~~Rl~~R~~----~~~~~i~~rl~~-~~~~~-----~~~~~~ 164 (205)
T 3tr0_A 96 AGRDVLLEIDWQGA-RQIRELFPPALSIFILPPSIEALRERLIKRRQ----DDTAIIEQRLAL-AREEM-----AHYKEF 164 (205)
T ss_dssp TTCEEEEECCHHHH-HHHHHHCTTCEEEEEECSCHHHHHHHHHTCTT----SCSSTHHHHHHH-HHHHH-----TTGGGC
T ss_pred cCCeEEEEECHHHH-HHHHHhCCCcEEEEEECcCHHHHHHHHHHhCC----CCHHHHHHHHHH-HHHHH-----hcccCC
Confidence 44677787532211 23344444 67888875 7777777777753 344444443332 23322 223678
Q ss_pred cEEEcCCCCchhhHHHHHHHHHHHh
Q 027528 109 DIIIPRGGDNHVAIDLIVQHIRTKL 133 (222)
Q Consensus 109 Dlvi~~~~~~~~~~~~~~~~i~~~l 133 (222)
|+||.|+ + ++.+.+.+...+
T Consensus 165 d~vi~n~-~----~~~~~~~l~~~i 184 (205)
T 3tr0_A 165 DYLVVND-N----FDQAVQNLIHII 184 (205)
T ss_dssp SEEEECS-S----HHHHHHHHHHHH
T ss_pred CEEEECC-C----HHHHHHHHHHHH
Confidence 9999865 3 333444444444
No 76
>1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A 1ko5_A* 1ko8_A* 1kof_A*
Probab=91.22 E-value=1.1 Score=33.96 Aligned_cols=66 Identities=17% Similarity=0.174 Sum_probs=40.0
Q ss_pred C-eEEEEECCHHHHHHHHHhhcccccCCCHHHHHH-HHHhccccchhhhccc-cCCCccEEEcCCCCchhhHHHHHHHHH
Q 027528 54 N-MKIFVDTDADVRLARRIRRDTVEKGRDIATVLD-QYSKFVKPAFDDFILP-TKKYADIIIPRGGDNHVAIDLIVQHIR 130 (222)
Q Consensus 54 D-~~Ifvd~d~d~rl~Rri~RD~~~rg~~~~~~~~-~~~~~~~p~~~~~i~p-~~~~ADlvi~~~~~~~~~~~~~~~~i~ 130 (222)
+ ..||+++|.++++.|...|+... .+ ..++. ++.. +-.+ ....||++|+++. .++.+.+.|.
T Consensus 104 ~~~vv~l~~~~e~~~~R~~~R~~~~--~~-~~~~~~~~~~--------~~~~~~~~~~~~~Id~~~----~~~~~~~~i~ 168 (175)
T 1knq_A 104 NLSFIYLKGDFDVIESRLKARKGHF--FK-TQMLVTQFET--------LQEPGADETDVLVVDIDQ----PLEGVVASTI 168 (175)
T ss_dssp TEEEEEEECCHHHHHHHHHTSTTCC--CC-HHHHHHHHHH--------CCCCCTTCTTEEEEECSS----CHHHHHHHHH
T ss_pred CEEEEEEECCHHHHHHHHHhccCCC--Cc-hHHHHHHHHh--------hhCcccCCCCeEEEeCCC----CHHHHHHHHH
Confidence 5 79999999999999998886311 12 33332 2221 1122 3456899998653 2445555555
Q ss_pred HHhc
Q 027528 131 TKLG 134 (222)
Q Consensus 131 ~~l~ 134 (222)
+.+.
T Consensus 169 ~~l~ 172 (175)
T 1knq_A 169 EVIK 172 (175)
T ss_dssp HHHH
T ss_pred HHHh
Confidence 5553
No 77
>3ld9_A DTMP kinase, thymidylate kinase; ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, ehrlich chaffeensis; 2.15A {Ehrlichia chaffeensis}
Probab=89.90 E-value=0.17 Score=41.65 Aligned_cols=74 Identities=15% Similarity=0.093 Sum_probs=34.3
Q ss_pred cCCeEEEEECCHHHHHHHHHhhcccccCCCHHHHHHHHHhccccchhhhccccCCCccEEEcCCCCchhhHHHHHHHHHH
Q 027528 52 LMNMKIFVDTDADVRLARRIRRDTVEKGRDIATVLDQYSKFVKPAFDDFILPTKKYADIIIPRGGDNHVAIDLIVQHIRT 131 (222)
Q Consensus 52 ~~D~~Ifvd~d~d~rl~Rri~RD~~~rg~~~~~~~~~~~~~~~p~~~~~i~p~~~~ADlvi~~~~~~~~~~~~~~~~i~~ 131 (222)
.-|+.||+|+|+++.+.|. .||.-+. .-..|...+...|..+.... ....++|+++..-+.. +.+.+.+.+
T Consensus 145 ~PDl~I~Ldv~~e~~~~Ri-~rdr~E~------~~~e~~~rv~~~y~~la~~~-~~~~~vIDa~~sieeV-~~I~~~l~~ 215 (223)
T 3ld9_A 145 YPDITFIIDVDINESLSRS-CKNGYEF------ADMEFYYRVRDGFYDIAKKN-PHRCHVITDKSETYDI-DDINFVHLE 215 (223)
T ss_dssp CCSEEEEEECC-----------------------CHHHHHHHHHHHHHHHHHC-TTTEEEEESSCSSSCC-CHHHHHHHH
T ss_pred CCCeEEEEeCCHHHHHHHh-ccCcccc------chHHHHHHHHHHHHHHHHHC-CCCEEEEcCCCCHHHH-HHHHHHHHH
Confidence 4799999999999999997 5553221 11123333455555544332 2357888865443333 666666666
Q ss_pred Hhc
Q 027528 132 KLG 134 (222)
Q Consensus 132 ~l~ 134 (222)
.|.
T Consensus 216 ~lg 218 (223)
T 3ld9_A 216 VIK 218 (223)
T ss_dssp HHH
T ss_pred HHh
Confidence 654
No 78
>3fb4_A Adenylate kinase; psychrophIle, phosphotransferase, ATP-binding, nucleotide-binding, transferase; HET: AP5; 2.00A {Marinibacillus marinus}
Probab=89.85 E-value=0.39 Score=37.95 Aligned_cols=41 Identities=12% Similarity=0.188 Sum_probs=28.8
Q ss_pred CcEEEEeccccCCC--hhhhc-------cCCeEEEEECCHHHHHHHHHhh
Q 027528 33 SDVILLEGILVFHD--SRVRE-------LMNMKIFVDTDADVRLARRIRR 73 (222)
Q Consensus 33 ~~vvIvEGi~~l~~--~~l~~-------~~D~~Ifvd~d~d~rl~Rri~R 73 (222)
..-+|++|...... ..+.. ..|..||+++|.++++.|...|
T Consensus 78 ~~~~ildg~p~~~~~~~~l~~~~~~~~~~~d~vi~l~~~~e~~~~Rl~~R 127 (216)
T 3fb4_A 78 QKGFLLDGFPRTVAQADALDSLLTDLGKKLDYVLNIKVEQEELMKRLTGR 127 (216)
T ss_dssp TTCEEEESCCCSHHHHHHHHHHHHHTTCCCSEEEEEECCHHHHHHHHHSE
T ss_pred CCcEEEeCCCCCHHHHHHHHHHHHhcCCCCCEEEEEECCHHHHHHHHHcC
Confidence 45688898433211 11222 2789999999999999999998
No 79
>1kag_A SKI, shikimate kinase I; transferase, structural genomics, PSI, protein structure initiative; 2.05A {Escherichia coli} SCOP: c.37.1.2
Probab=89.84 E-value=0.32 Score=36.96 Aligned_cols=73 Identities=15% Similarity=0.251 Sum_probs=37.2
Q ss_pred ccCCeEEEEECCHHHHHHHHHhhcccc--cCCC--HHHHHHHHHhccccchhhhccccCCCccEEEcCCCCchhhHHHHH
Q 027528 51 ELMNMKIFVDTDADVRLARRIRRDTVE--KGRD--IATVLDQYSKFVKPAFDDFILPTKKYADIIIPRGGDNHVAIDLIV 126 (222)
Q Consensus 51 ~~~D~~Ifvd~d~d~rl~Rri~RD~~~--rg~~--~~~~~~~~~~~~~p~~~~~i~p~~~~ADlvi~~~~~~~~~~~~~~ 126 (222)
..+++.+|++++.+++..|...|.... .+.+ .+.+..+|.. ..|.| ...||++|+++.. .++.+.
T Consensus 95 ~~~~~~i~l~~~~~~l~~R~~~r~~r~~~~~~~~~~~~~~~~~~~-r~~~~-------~~~a~~~id~~~~---~~~~~~ 163 (173)
T 1kag_A 95 SARGVVVYLETTIEKQLARTQRDKKRPLLHVETPPREVLEALANE-RNPLY-------EEIADVTIRTDDQ---SAKVVA 163 (173)
T ss_dssp HHHSEEEECCCCHHHHHSCC------CCSSSSCCCHHHHHHHHHH-HHHHH-------HHHCSEEC--------CHHHHH
T ss_pred HhCCEEEEEeCCHHHHHHHHhCCCCCCCCCCCCchHHHHHHHHHH-HHHHH-------HhhCCEEEECCCC---CHHHHH
Confidence 346899999999999999887763211 1222 3444444433 23333 3458999986522 234455
Q ss_pred HHHHHHhc
Q 027528 127 QHIRTKLG 134 (222)
Q Consensus 127 ~~i~~~l~ 134 (222)
+.|...+.
T Consensus 164 ~~i~~~l~ 171 (173)
T 1kag_A 164 NQIIHMLE 171 (173)
T ss_dssp HHHHHHHC
T ss_pred HHHHHHHH
Confidence 55555554
No 80
>1via_A Shikimate kinase; structural genomics, transferase; HET: MSE; 1.57A {Campylobacter jejuni} SCOP: c.37.1.2
Probab=89.66 E-value=0.5 Score=36.12 Aligned_cols=90 Identities=13% Similarity=0.190 Sum_probs=51.1
Q ss_pred CcEEEEeccccCCChhhhccCCeEEEEECCHHHHHHHHHhhcccccCC--CHHHHHHHHHhccccchhhhccccCCCccE
Q 027528 33 SDVILLEGILVFHDSRVRELMNMKIFVDTDADVRLARRIRRDTVEKGR--DIATVLDQYSKFVKPAFDDFILPTKKYADI 110 (222)
Q Consensus 33 ~~vvIvEGi~~l~~~~l~~~~D~~Ifvd~d~d~rl~Rri~RD~~~rg~--~~~~~~~~~~~~~~p~~~~~i~p~~~~ADl 110 (222)
...||..|-....+..+++ .+..||+++|.++++.|...|....|.. +.+.+.+.|..+ .|.| ...+|+
T Consensus 74 ~~~vi~~g~~~~~~~~l~~-~~~~i~l~~~~e~~~~R~~~r~~~~r~~~~~~~~i~~~~~~r-~~~y-------~~~~~~ 144 (175)
T 1via_A 74 EKACIATGGGFVNVSNLEK-AGFCIYLKADFEYLKKRLDKDEISKRPLFYDEIKAKKLYNER-LSKY-------EQKANF 144 (175)
T ss_dssp CSEEEECCTTGGGSTTGGG-GCEEEEEECCHHHHTTCCCGGGTTTSCTTCCHHHHHHHHHHH-HHHH-------HHHCSE
T ss_pred CCEEEECCCCEehhhHHhc-CCEEEEEeCCHHHHHHHHhcccCCCCCCcccHHHHHHHHHHH-HHHH-------HhcCCE
Confidence 4556655632222222333 4799999999999998877763112222 144444445432 3333 235799
Q ss_pred EEcCCCCchhhHHHHHHHHHHHhc
Q 027528 111 IIPRGGDNHVAIDLIVQHIRTKLG 134 (222)
Q Consensus 111 vi~~~~~~~~~~~~~~~~i~~~l~ 134 (222)
+|+.+.. .++.+.+.|.+.+.
T Consensus 145 ~Idt~~~---~~eev~~~I~~~l~ 165 (175)
T 1via_A 145 ILNIENK---NIDELLSEIKKVIK 165 (175)
T ss_dssp EEECTTC---CHHHHHHHHHHHHC
T ss_pred EEECCCC---CHHHHHHHHHHHHH
Confidence 9986532 35566667777665
No 81
>3dl0_A Adenylate kinase; phosphotransferase, zinc coordination, ATP-binding, binding, nucleotide biosynthesis, nucleotide-binding, trans; HET: AP5; 1.58A {Bacillus subtilis} PDB: 1p3j_A* 2ori_A* 2eu8_A* 2oo7_A* 2p3s_A* 2qaj_A* 2osb_A* 3dkv_A* 1zin_A* 1zio_A* 1zip_A* 1s3g_A*
Probab=89.62 E-value=0.38 Score=38.10 Aligned_cols=21 Identities=29% Similarity=0.419 Sum_probs=20.1
Q ss_pred CCeEEEEECCHHHHHHHHHhh
Q 027528 53 MNMKIFVDTDADVRLARRIRR 73 (222)
Q Consensus 53 ~D~~Ifvd~d~d~rl~Rri~R 73 (222)
.|..||+++|.++++.|...|
T Consensus 107 ~d~vi~l~~~~e~~~~Rl~~R 127 (216)
T 3dl0_A 107 IDYVINIQVDKDVLMERLTGR 127 (216)
T ss_dssp CSEEEEEECCGGGHHHHHHTE
T ss_pred CCEEEEEECCHHHHHHHHHCC
Confidence 789999999999999999998
No 82
>2vli_A Antibiotic resistance protein; transferase, tunicamycin, phosphotransferase; 1.95A {Deinococcus radiodurans}
Probab=88.52 E-value=0.97 Score=34.42 Aligned_cols=42 Identities=12% Similarity=0.068 Sum_probs=26.9
Q ss_pred CcEEEEeccccCC--Chhhhcc---CCeE---EEEECCHHHHHHHHHhhc
Q 027528 33 SDVILLEGILVFH--DSRVREL---MNMK---IFVDTDADVRLARRIRRD 74 (222)
Q Consensus 33 ~~vvIvEGi~~l~--~~~l~~~---~D~~---Ifvd~d~d~rl~Rri~RD 74 (222)
..+||+++.+.-. .+...+. .+.. ||+++|.++++.|...|.
T Consensus 77 g~~vi~d~~~~~~~~~~~~~~~l~~~~~~~~~i~l~~~~e~~~~R~~~R~ 126 (183)
T 2vli_A 77 AGPLIVPVSISDTARHRRLMSGLKDRGLSVHHFTLIAPLNVVLERLRRDG 126 (183)
T ss_dssp SSCEEEEECCCCHHHHHHHHHHHHHTTCCCEEEEEECCHHHHHHHHHTC-
T ss_pred CCcEEEeeeccCHHHHHHHHHHHHhcCCceEEEEEeCCHHHHHHHHHhcc
Confidence 5678888876421 1111111 2333 999999999999988885
No 83
>1nn5_A Similar to deoxythymidylate kinase (thymidylate K; P-loop, D4TMP, transferase; HET: 2DT ANP; 1.50A {Homo sapiens} SCOP: c.37.1.1 PDB: 1e2e_A* 1e2d_A* 1e2g_A* 1e2q_A* 1e99_A* 1e9a_A* 1e9b_A* 1nmx_A* 1nmz_A* 1nn0_A* 1nn1_A* 1e2f_A* 1nn3_A* 2xx3_A* 1e9c_A* 1e9d_A* 1e9e_A* 1e98_A* 1nmy_A* 1e9f_A*
Probab=88.39 E-value=1.1 Score=34.93 Aligned_cols=21 Identities=10% Similarity=0.066 Sum_probs=16.3
Q ss_pred cCCeEEEEECCHHHHHHHHHh
Q 027528 52 LMNMKIFVDTDADVRLARRIR 72 (222)
Q Consensus 52 ~~D~~Ifvd~d~d~rl~Rri~ 72 (222)
..|+.||+++|.++++.|...
T Consensus 129 ~~d~vi~l~~~~e~~~~Rl~r 149 (215)
T 1nn5_A 129 KPDLVLFLQLQLADAAKRGAF 149 (215)
T ss_dssp CCSEEEEEECCHHHHHHC---
T ss_pred CCCEEEEEeCCHHHHHHHhcc
Confidence 468999999999999888643
No 84
>4edh_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology; HET: TMP ADP; 1.32A {Pseudomonas aeruginosa PAO1} PDB: 4e5u_A* 4esh_A* 4gmd_A* 3uwk_A* 3uwo_A* 3uxm_A*
Probab=88.00 E-value=1.2 Score=35.86 Aligned_cols=78 Identities=10% Similarity=0.065 Sum_probs=41.6
Q ss_pred ccCCeEEEEECCHHHHHHHHHhhcccccCCC-HHHHHHHHHhccccchhhhccccCCCccEEEcCCCCchhhHHHHHHHH
Q 027528 51 ELMNMKIFVDTDADVRLARRIRRDTVEKGRD-IATVLDQYSKFVKPAFDDFILPTKKYADIIIPRGGDNHVAIDLIVQHI 129 (222)
Q Consensus 51 ~~~D~~Ifvd~d~d~rl~Rri~RD~~~rg~~-~~~~~~~~~~~~~p~~~~~i~p~~~~ADlvi~~~~~~~~~~~~~~~~i 129 (222)
..-|+.||+|+|+++.+.|...|....+-.. ..+ |...+...|..+.... ...-++|+.+..-+...+.+.+.|
T Consensus 130 ~~PDlvi~Ld~~~e~~~~Ri~~R~~~dr~E~~~~~----~~~rv~~~y~~l~~~~-~~~~~vIDa~~s~eeV~~~I~~~l 204 (213)
T 4edh_A 130 LRPDLTLVFDLPVEIGLARAAARGRLDRFEQEDRR----FFEAVRQTYLQRAAQA-PERYQVLDAGLPLAEVQAGLDRLL 204 (213)
T ss_dssp CCCSEEEEEECCHHHHHHHHCCCSSCCTTTTSCHH----HHHHHHHHHHHHHHHC-TTTEEEEETTSCHHHHHHHHHHHH
T ss_pred CCCCEEEEEeCCHHHHHHHHHhcCCcCcccccHHH----HHHHHHHHHHHHHHHC-CCcEEEEeCCCCHHHHHHHHHHHH
Confidence 3478999999999999999888742111111 112 2233444554443322 234577875543332333444444
Q ss_pred HHHh
Q 027528 130 RTKL 133 (222)
Q Consensus 130 ~~~l 133 (222)
.+.|
T Consensus 205 ~~~l 208 (213)
T 4edh_A 205 PNLL 208 (213)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 4444
No 85
>3hjn_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynth nucleotide-binding, transferase, structural genomics; HET: ADP TYD; 2.10A {Thermotoga maritima}
Probab=86.29 E-value=0.67 Score=36.87 Aligned_cols=69 Identities=10% Similarity=0.215 Sum_probs=38.4
Q ss_pred CCeEEEEECCHHHHHHHHHhhcccccCCCHHHHHHHHHhccccchhhhccccCCCccEEEcCCCCchhhHHHHHHHHHHH
Q 027528 53 MNMKIFVDTDADVRLARRIRRDTVEKGRDIATVLDQYSKFVKPAFDDFILPTKKYADIIIPRGGDNHVAIDLIVQHIRTK 132 (222)
Q Consensus 53 ~D~~Ifvd~d~d~rl~Rri~RD~~~rg~~~~~~~~~~~~~~~p~~~~~i~p~~~~ADlvi~~~~~~~~~~~~~~~~i~~~ 132 (222)
-|+.+|+|+|+++.+.|+-.||-- .+. + |...++-+|.........+ =++|+.+. .++.|.+.|.+.
T Consensus 122 PDl~i~Ld~~~e~~~~R~~~~dr~---e~~-e----f~~rv~~~y~~la~~~~~~-~~~IDa~~----~~eeV~~~I~~~ 188 (197)
T 3hjn_A 122 PDLTFYIDVDVETALKRKGELNRF---EKR-E----FLERVREGYLVLAREHPER-IVVLDGKR----SIEEIHRDVVRE 188 (197)
T ss_dssp CSEEEEEECCHHHHHHHC---CTT---CCH-H----HHHHHHHHHHHHHHHCTTT-EEEEETTS----CHHHHHHHHHHH
T ss_pred CCceeecCcChHHHHHhCcCcCcc---ccH-H----HHHHHHHHHHHHHHhCCCC-EEEEcCCC----CHHHHHHHHHHH
Confidence 699999999999999997776632 222 2 4444555666554433222 24566432 244555555555
Q ss_pred hc
Q 027528 133 LG 134 (222)
Q Consensus 133 l~ 134 (222)
+.
T Consensus 189 i~ 190 (197)
T 3hjn_A 189 VK 190 (197)
T ss_dssp HS
T ss_pred HH
Confidence 44
No 86
>2xb4_A Adenylate kinase; ATP-binding, nucleotide-binding, transferase; HET: SRT; 1.80A {Desulfovibrio gigas} PDB: 3l0s_A* 3l0p_A*
Probab=84.86 E-value=2.6 Score=33.61 Aligned_cols=42 Identities=21% Similarity=0.152 Sum_probs=29.3
Q ss_pred CcEEEEeccccCCC--hhhh-------ccCCeEEEEECCHHHHHHHHHhhc
Q 027528 33 SDVILLEGILVFHD--SRVR-------ELMNMKIFVDTDADVRLARRIRRD 74 (222)
Q Consensus 33 ~~vvIvEGi~~l~~--~~l~-------~~~D~~Ifvd~d~d~rl~Rri~RD 74 (222)
...+|++|...-.. ..+. ...|+.||+++|.++.+.|...|.
T Consensus 77 g~~vIlDg~~~~~~~~~~l~~~~~~~~~~~d~vi~l~~~~e~~~~Rl~~R~ 127 (223)
T 2xb4_A 77 KDGWLLDGFPRNTVQAQKLFEALQEKGMKINFVIEILLPREVAKNRIMGRR 127 (223)
T ss_dssp TTCEEEESCCCSHHHHHHHHHHHHHTTCCCCEEEEEECCHHHHHHHHHTBC
T ss_pred CCeEEEeCCcCCHHHHHHHHHHHHhcCCCCCEEEEEECCHHHHHHHHHccc
Confidence 56788998322100 1121 246899999999999999998885
No 87
>3tlx_A Adenylate kinase 2; structural genomics, structural genomics consortium, SGC, RO fold, transferase, ATP binding, phosphorylation; HET: ADP ATP AMP; 2.75A {Plasmodium falciparum}
Probab=83.83 E-value=2.3 Score=34.64 Aligned_cols=41 Identities=12% Similarity=0.168 Sum_probs=29.5
Q ss_pred CcEEEEeccccCCChhhh----------ccCCeEEEEECCHHHHHHHHHhhc
Q 027528 33 SDVILLEGILVFHDSRVR----------ELMNMKIFVDTDADVRLARRIRRD 74 (222)
Q Consensus 33 ~~vvIvEGi~~l~~~~l~----------~~~D~~Ifvd~d~d~rl~Rri~RD 74 (222)
..-+|++| |.....+.. ...|..||+++|.++.+.|...|.
T Consensus 107 ~~~~ildg-~p~~~~q~~~l~~~l~~~~~~~d~vi~l~~p~e~~~~Rl~~R~ 157 (243)
T 3tlx_A 107 KKGFILDG-YPRNVKQAEDLNKLLQKNQTKLDGVFYFNVPDEVLVNRISGRL 157 (243)
T ss_dssp SSEEEEES-CCCSHHHHHHHHHHHHHTTCCCCEEEEEECCHHHHHHHHHTEE
T ss_pred cCCEEecC-CCCcHHHHHHHHHHHHHcCCCCceEEEEeCCHHHHHHHHHcCC
Confidence 45688999 332212211 237899999999999999999885
No 88
>2yvu_A Probable adenylyl-sulfate kinase; transferase, structural genomics, NPPSFA, national P protein structural and functional analyses; 2.10A {Aeropyrum pernix}
Probab=83.38 E-value=4.4 Score=30.97 Aligned_cols=39 Identities=13% Similarity=0.267 Sum_probs=24.9
Q ss_pred CCcEEEEeccccCC--Chhhhcc------CCeEEEEECCHHHHHHHH
Q 027528 32 PSDVILLEGILVFH--DSRVREL------MNMKIFVDTDADVRLARR 70 (222)
Q Consensus 32 ~~~vvIvEGi~~l~--~~~l~~~------~D~~Ifvd~d~d~rl~Rr 70 (222)
...+||+.|..+.. .+.++.+ -++.||+++|.++++.|.
T Consensus 84 ~g~~vi~d~~~~~~~~r~~~~~~~~~~~~~~~~v~L~~~~e~~~~R~ 130 (186)
T 2yvu_A 84 NGVIVICSFVSPYKQARNMVRRIVEEEGIPFLEIYVKASLEEVIRRD 130 (186)
T ss_dssp TTCEEEEECCCCCHHHHHHHHHHHHHTTCCEEEEEEECCHHHHHHHC
T ss_pred CCCEEEEeCccccHHHHHHHHHHhhccCCCeEEEEEeCCHHHHHHhh
Confidence 34567777754321 1223322 368999999999998874
No 89
>2wwf_A Thymidilate kinase, putative; transferase, malaria; HET: TMP ADP; 1.89A {Plasmodium falciparum} PDB: 2wwg_A* 2wwh_A* 2wwi_A*
Probab=83.36 E-value=0.75 Score=35.98 Aligned_cols=69 Identities=12% Similarity=0.096 Sum_probs=40.3
Q ss_pred cCCeEEEEECCHHHHHHHHHhhcccccCCCHHHHHHHHHhccccchhhhccccCCCccEEEcCCCCchhhHHHHHHHHHH
Q 027528 52 LMNMKIFVDTDADVRLARRIRRDTVEKGRDIATVLDQYSKFVKPAFDDFILPTKKYADIIIPRGGDNHVAIDLIVQHIRT 131 (222)
Q Consensus 52 ~~D~~Ifvd~d~d~rl~Rri~RD~~~rg~~~~~~~~~~~~~~~p~~~~~i~p~~~~ADlvi~~~~~~~~~~~~~~~~i~~ 131 (222)
..|+.||+++|.++++.|...|. .+ .+.+++.++. ...|.... ...++++|+++. .++.+.+.|.+
T Consensus 130 ~~d~vi~l~~~~e~~~~Rl~~r~--~r-~~~~~~~~~~----~~~~~~~~---~~~~~~~Id~~~----~~~~~~~~i~~ 195 (212)
T 2wwf_A 130 KPDVVFYLNVPPNYAQNRSDYGE--EI-YEKVETQKKI----YETYKHFA---HEDYWINIDATR----KIEDIHNDIVK 195 (212)
T ss_dssp CCSEEEEEECCTTGGGGSTTTTS--ST-TCSHHHHHHH----HHHGGGGT---TCTTEEEEECSS----CHHHHHHHHHH
T ss_pred CCCEEEEEeCCHHHHHHhhccCc--cc-ccHHHHHHHH----HHHHHHHh---ccCCEEEEECCC----CHHHHHHHHHH
Confidence 57899999999999888754431 11 2223333332 22232222 256899998653 24555666666
Q ss_pred Hhc
Q 027528 132 KLG 134 (222)
Q Consensus 132 ~l~ 134 (222)
.+.
T Consensus 196 ~l~ 198 (212)
T 2wwf_A 196 EVT 198 (212)
T ss_dssp HHT
T ss_pred HHH
Confidence 664
No 90
>3v9p_A DTMP kinase, thymidylate kinase; ssgcid, STRU genomics, seattle structural genomics center for infectious transferase; 1.90A {Burkholderia thailandensis}
Probab=81.54 E-value=0.34 Score=39.76 Aligned_cols=74 Identities=14% Similarity=0.143 Sum_probs=42.0
Q ss_pred cCCeEEEEECCHHHHHHHHHhhcccccCCCHHHHHHHHHhccccchhhhccccCCCccEEEcCCCCchhhHHHHHHHHHH
Q 027528 52 LMNMKIFVDTDADVRLARRIRRDTVEKGRDIATVLDQYSKFVKPAFDDFILPTKKYADIIIPRGGDNHVAIDLIVQHIRT 131 (222)
Q Consensus 52 ~~D~~Ifvd~d~d~rl~Rri~RD~~~rg~~~~~~~~~~~~~~~p~~~~~i~p~~~~ADlvi~~~~~~~~~~~~~~~~i~~ 131 (222)
.-|+.||+|+|+++.+.|...|....+ .+.--..|...+...|..+.... ...-++|+.+.. ++.+.+.|.+
T Consensus 151 ~PDl~I~Ldv~~e~~~~Ri~~R~~~dr---~E~~~~ef~~rv~~~Y~~la~~~-~~~~~vIDa~~s----~eeV~~~I~~ 222 (227)
T 3v9p_A 151 QPDLTVLFDVPPQIASARRGAVRMPDK---FESESDAFFARTRAEYLRRAQEA-PHRFVIVDSSEP----IAQIRKQLEG 222 (227)
T ss_dssp CCSEEEEEECCSSCGGGTTTCCCCC------CCHHHHHHHHHHHHHHHHHHHC-TTTEEEEETTSC----HHHHHHHHHH
T ss_pred CCCEEEEEeCCHHHHHHHHHhccCccc---hhhhhHHHHHHHHHHHHHHHHHh-cCCEEEEeCCCC----HHHHHHHHHH
Confidence 479999999999999999887742111 11111234444566666654332 223567775533 4445555544
Q ss_pred Hh
Q 027528 132 KL 133 (222)
Q Consensus 132 ~l 133 (222)
.+
T Consensus 223 ~l 224 (227)
T 3v9p_A 223 VL 224 (227)
T ss_dssp HH
T ss_pred HH
Confidence 43
No 91
>1ltq_A Polynucleotide kinase; phosphatase, alpha/beta, P-loop, transferase; HET: ADP; 2.33A {Enterobacteria phage T4} SCOP: c.108.1.9 c.37.1.1 PDB: 1rc8_A* 1rpz_A* 1rrc_A* 2ia5_A
Probab=81.17 E-value=2.6 Score=34.96 Aligned_cols=60 Identities=12% Similarity=0.107 Sum_probs=39.9
Q ss_pred CCCcEEEEeccccCCC--hhhhcc------CCeEEEEECCHHHHHHHHHhhcccccCCCHHHHHHHHHhc
Q 027528 31 NPSDVILLEGILVFHD--SRVREL------MNMKIFVDTDADVRLARRIRRDTVEKGRDIATVLDQYSKF 92 (222)
Q Consensus 31 ~~~~vvIvEGi~~l~~--~~l~~~------~D~~Ifvd~d~d~rl~Rri~RD~~~rg~~~~~~~~~~~~~ 92 (222)
.....+|++|.+.-.. ..+..+ -+..||+++|.++++.|...|.. +..+.+.+..+|...
T Consensus 76 ~~g~~vi~d~~~~~~~~~~~l~~~~~~~~~~~~~i~l~~~~e~~~~R~~~R~~--~~~~~e~i~~~~~~~ 143 (301)
T 1ltq_A 76 DSVKGVIISDTNLNPERRLAWETFAKEYGWKVEHKVFDVPWTELVKRNSKRGT--KAVPIDVLRSMYKSM 143 (301)
T ss_dssp TTCCEEEECSCCCCHHHHHHHHHHHHHTTCEEEEEECCCCHHHHHHHHHHCGG--GCCCHHHHHHHHHHH
T ss_pred cCCCEEEEeCCCCCHHHHHHHHHHHHHcCCcEEEEEEECCHHHHHHHHHhccC--CCCCHHHHHHHHHHH
Confidence 3457899999875321 123221 23799999999999999999864 344566666666543
No 92
>1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase, antibiotic resistance, phosphorylation, mononucleoti binding fold; HET: ATP; 2.50A {Streptomyces venezuelae} SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A* 1qhy_A*
Probab=80.87 E-value=6.9 Score=29.33 Aligned_cols=42 Identities=19% Similarity=0.308 Sum_probs=28.2
Q ss_pred CcEEEEeccccCC---ChhhhccC---C-eEEEEECCHHHHHHHHHhhc
Q 027528 33 SDVILLEGILVFH---DSRVRELM---N-MKIFVDTDADVRLARRIRRD 74 (222)
Q Consensus 33 ~~vvIvEGi~~l~---~~~l~~~~---D-~~Ifvd~d~d~rl~Rri~RD 74 (222)
...+|++|.+... .+.++..+ . ..||+++|.++...|...|.
T Consensus 86 g~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~v~l~~~~e~l~~R~~~r~ 134 (178)
T 1qhx_A 86 GARIIIDDVFLGGAAAQERWRSFVGDLDVLWVGVRCDGAVAEGRETARG 134 (178)
T ss_dssp TCEEEEEECCTTTHHHHHHHHHHHTTCCEEEEEEECCHHHHHHHHHHTS
T ss_pred CCeEEEEeccccChHHHHHHHHHhcCCcEEEEEEECCHHHHHHHHHhhC
Confidence 3578999976521 12333222 3 67889999999998887774
No 93
>2pez_A Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthetase 1 (PAPS synthetase...; NMP-kinase fold, protein in complex with nucleic acid; HET: GGZ DAT; 1.40A {Homo sapiens} PDB: 2pey_A* 2ax4_A*
Probab=79.35 E-value=2.1 Score=32.67 Aligned_cols=21 Identities=29% Similarity=0.430 Sum_probs=17.2
Q ss_pred cCCeEEEEECCHHHHHHHHHh
Q 027528 52 LMNMKIFVDTDADVRLARRIR 72 (222)
Q Consensus 52 ~~D~~Ifvd~d~d~rl~Rri~ 72 (222)
..|+.||+++|.++++.|...
T Consensus 104 ~~~~~i~l~~~~e~~~~R~~~ 124 (179)
T 2pez_A 104 LPFFEVFVDAPLHVCEQRDVK 124 (179)
T ss_dssp CCEEEEEEECCHHHHHHHCTT
T ss_pred CCeEEEEEeCCHHHHHHHHhh
Confidence 356899999999999988543
No 94
>3ch4_B Pmkase, phosphomevalonate kinase; parallel beta-sheet with the strand order 23145, walker A motif, cholesterol biosynthesis, lipid synthesis; 1.76A {Homo sapiens}
Probab=78.47 E-value=2.9 Score=33.75 Aligned_cols=89 Identities=19% Similarity=0.153 Sum_probs=51.6
Q ss_pred CCcEEEEeccccCCCh-hhhccCC---eEEEEECCHHHHHHHHHhhcccccCCCHHHHHHHHHhccccchhhhccccCCC
Q 027528 32 PSDVILLEGILVFHDS-RVRELMN---MKIFVDTDADVRLARRIRRDTVEKGRDIATVLDQYSKFVKPAFDDFILPTKKY 107 (222)
Q Consensus 32 ~~~vvIvEGi~~l~~~-~l~~~~D---~~Ifvd~d~d~rl~Rri~RD~~~rg~~~~~~~~~~~~~~~p~~~~~i~p~~~~ 107 (222)
..+++||+|+=-.+.- .++..+. ..|+|.+++++|.+|...+ ..|.+..+ . +.-+.+. ..
T Consensus 102 ~~~~vII~dvR~~~Ev~~fr~~~g~~~~iirI~as~~~R~~Rg~~~---~~~~Dd~e--s----------E~gL~~~-~~ 165 (202)
T 3ch4_B 102 SQPIWLVSDTRRVSDIQWFREAYGAVTQTVRVVALEQSRQQRGWVF---TPGVDDAE--S----------ECGLDNF-GD 165 (202)
T ss_dssp CCSEEEECCCCSHHHHHHHHHHHGGGEEEEEEEECHHHHHHTTCCC---CTTTTTSH--H----------HHTTTTC-CC
T ss_pred CCCcEEEeCCCCHHHHHHHHHhCCCcEEEEEEECCHHHHHHHhhhc---cccccccc--c----------ccCCCCC-Cc
Confidence 3469999999876421 3444443 3699999999999994211 12222111 0 1113333 67
Q ss_pred ccEEEcCCCCch---hhHHHHHHHHHHHhccC
Q 027528 108 ADIIIPRGGDNH---VAIDLIVQHIRTKLGQH 136 (222)
Q Consensus 108 ADlvi~~~~~~~---~~~~~~~~~i~~~l~~~ 136 (222)
||++|.|.+..+ ..++.++..++..|..|
T Consensus 166 ~D~vI~Ndgt~eel~~~v~~ll~~~~~~~~~~ 197 (202)
T 3ch4_B 166 FDWVIENHGVEQRLEEQLENLIEFIRSRLKLH 197 (202)
T ss_dssp CSEEEEECSCHHHHHHHHHHHHHHHHTTCC--
T ss_pred CCEEEEeCCCHHHHHHHHHHHHHHHHHHHhhh
Confidence 999998765432 24455666666666533
No 95
>3cm0_A Adenylate kinase; ATP-binding, cytoplasm, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics; 1.80A {Thermus thermophilus}
Probab=77.37 E-value=6.6 Score=29.69 Aligned_cols=22 Identities=18% Similarity=0.291 Sum_probs=20.1
Q ss_pred CCeEEEEECCHHHHHHHHHhhc
Q 027528 53 MNMKIFVDTDADVRLARRIRRD 74 (222)
Q Consensus 53 ~D~~Ifvd~d~d~rl~Rri~RD 74 (222)
.|..||+++|.++++.|...|.
T Consensus 106 ~~~vi~l~~~~e~~~~R~~~R~ 127 (186)
T 3cm0_A 106 LLGVVLVEVPEEELVRRILRRA 127 (186)
T ss_dssp EEEEEEEECCHHHHHHHHHHHH
T ss_pred CCEEEEEeCCHHHHHHHHHhcc
Confidence 6899999999999999998885
No 96
>1gtv_A TMK, thymidylate kinase; transferase, transferase (ATP:TMP phosphotransferase); HET: TYD TMP; 1.55A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1g3u_A* 1gsi_A* 1mrn_A* 1mrs_A* 1n5i_A* 1n5j_A* 1n5k_A* 1n5l_A* 1w2g_A* 1w2h_A*
Probab=75.38 E-value=0.2 Score=39.44 Aligned_cols=24 Identities=13% Similarity=0.178 Sum_probs=21.7
Q ss_pred cCCeEEEEECCHHHHHHHHHhhcc
Q 027528 52 LMNMKIFVDTDADVRLARRIRRDT 75 (222)
Q Consensus 52 ~~D~~Ifvd~d~d~rl~Rri~RD~ 75 (222)
..|..||+++|+++++.|...|+.
T Consensus 132 ~~d~~i~l~~~~~~~~~R~~~R~~ 155 (214)
T 1gtv_A 132 KPDWQVLLAVSAELAGERSRGRAQ 155 (214)
T ss_dssp BCEEEEEEEEEHHHHHHHHHHHHH
T ss_pred CCCEEEEEeCCHHHHHHHHHcccc
Confidence 578999999999999999999864
No 97
>1ak2_A Adenylate kinase isoenzyme-2; nucleoside monophosphate kinase, phosphotransferase; 1.92A {Bos taurus} SCOP: c.37.1.1 g.41.2.1 PDB: 2ak2_A 2c9y_A*
Probab=74.30 E-value=9.5 Score=30.33 Aligned_cols=23 Identities=13% Similarity=0.040 Sum_probs=20.6
Q ss_pred cCCeEEEEECCHHHHHHHHHhhc
Q 027528 52 LMNMKIFVDTDADVRLARRIRRD 74 (222)
Q Consensus 52 ~~D~~Ifvd~d~d~rl~Rri~RD 74 (222)
..|+.||+++|.++.+.|...|.
T Consensus 122 ~~d~vi~L~~~~e~~~~Rl~~R~ 144 (233)
T 1ak2_A 122 KLDSVIEFSIPDSLLIRRITGRL 144 (233)
T ss_dssp CCCEEEEEECCHHHHHHHHHTCE
T ss_pred CCCEEEEEECCHHHHHHHHHcCC
Confidence 36899999999999999998884
No 98
>1zd8_A GTP:AMP phosphotransferase mitochondrial; ATP:AMP phosphotransferase, myokinase, structural genomics, structural genomics consortium, SGC; 1.48A {Homo sapiens} PDB: 2ak3_A*
Probab=73.58 E-value=2.3 Score=33.89 Aligned_cols=42 Identities=17% Similarity=0.059 Sum_probs=29.0
Q ss_pred CcEEEEeccccCCC--hhhh--ccCCeEEEEECCHHHHHHHHHhhc
Q 027528 33 SDVILLEGILVFHD--SRVR--ELMNMKIFVDTDADVRLARRIRRD 74 (222)
Q Consensus 33 ~~vvIvEGi~~l~~--~~l~--~~~D~~Ifvd~d~d~rl~Rri~RD 74 (222)
...+|++|...... ..+. ...|+.||+++|.++++.|...|.
T Consensus 84 ~~~~vid~~~~~~~~~~~l~~~~~~~~vi~L~~~~~~~~~R~~~R~ 129 (227)
T 1zd8_A 84 QYSWLLDGFPRTLPQAEALDRAYQIDTVINLNVPFEVIKQRLTARW 129 (227)
T ss_dssp TSCEEEESCCCSHHHHHHHHTTSCCCEEEEEECCHHHHHHHHTCEE
T ss_pred CCCEEEeCCCCCHHHHHHHHHhcCCCEEEEEECCHHHHHHHHHcCc
Confidence 34577899543211 1122 346899999999999999988774
No 99
>2gks_A Bifunctional SAT/APS kinase; transferase, sulfurylase; HET: ADP; 2.31A {Aquifex aeolicus}
Probab=73.45 E-value=2.3 Score=39.28 Aligned_cols=39 Identities=23% Similarity=0.474 Sum_probs=28.0
Q ss_pred CCcEEEEeccccCCC--hhhhccC---C-eEEEEECCHHHHHHHH
Q 027528 32 PSDVILLEGILVFHD--SRVRELM---N-MKIFVDTDADVRLARR 70 (222)
Q Consensus 32 ~~~vvIvEGi~~l~~--~~l~~~~---D-~~Ifvd~d~d~rl~Rr 70 (222)
....||+++.+++.. ..++.++ | ..||+++|.++++.|.
T Consensus 443 ~G~~VI~d~~~~~~~~r~~~~~~l~~~d~~vV~L~~~~e~~~~Rl 487 (546)
T 2gks_A 443 HNGVVICALVSPYRSARNQVRNMMEEGKFIEVFVDAPVEVCEERD 487 (546)
T ss_dssp TTCEEEEECCCCCHHHHHHHHTTSCTTCEEEEEEECCGGGHHHHC
T ss_pred CCCEEEEEcCCCCHHHHHHHHHHhhcCCEEEEEEeCCHHHHHHHh
Confidence 446889998776431 2344544 6 8999999999998774
No 100
>2v54_A DTMP kinase, thymidylate kinase; nucleotide biosynthesis, ATP-binding, nucleotide-binding, poxvirus, transferase; HET: TYD POP; 2.4A {Vaccinia virus copenhagen} PDB: 2w0s_A*
Probab=73.13 E-value=2.7 Score=32.47 Aligned_cols=17 Identities=12% Similarity=0.190 Sum_probs=15.2
Q ss_pred cCCeEEEEECCHHHHHH
Q 027528 52 LMNMKIFVDTDADVRLA 68 (222)
Q Consensus 52 ~~D~~Ifvd~d~d~rl~ 68 (222)
..|+.||+++|+++++.
T Consensus 121 ~~d~vi~l~~~~e~~~~ 137 (204)
T 2v54_A 121 KPDLVIFLESGSKEINR 137 (204)
T ss_dssp CCSEEEEECCCHHHHTT
T ss_pred CCCEEEEEeCCHHHHHh
Confidence 47899999999998877
No 101
>1ly1_A Polynucleotide kinase; PNK, phosphatase, transferase; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1
Probab=72.65 E-value=2.4 Score=31.80 Aligned_cols=59 Identities=12% Similarity=0.102 Sum_probs=37.4
Q ss_pred CCCcEEEEeccccCCC--hhhhcc-----C-CeEEEEECCHHHHHHHHHhhcccccCCCHHHHHHHHHh
Q 027528 31 NPSDVILLEGILVFHD--SRVREL-----M-NMKIFVDTDADVRLARRIRRDTVEKGRDIATVLDQYSK 91 (222)
Q Consensus 31 ~~~~vvIvEGi~~l~~--~~l~~~-----~-D~~Ifvd~d~d~rl~Rri~RD~~~rg~~~~~~~~~~~~ 91 (222)
.....+|++|.+.-.. ..+..+ . ...||+++|.++++.|...|.. ...+.+.+..++..
T Consensus 76 ~~g~~vi~d~~~~~~~~~~~l~~~~~~~~~~~~~i~l~~~~~~~~~R~~~R~~--~~~~~~~i~~~~~~ 142 (181)
T 1ly1_A 76 DSVKGVIISDTNLNPERRLAWETFAKEYGWKVEHKVFDVPWTELVKRNSKRGT--KAVPIDVLRSMYKS 142 (181)
T ss_dssp SSCCEEEECSCCCSHHHHHHHHHHHHHHTCEEEEEECCCCHHHHHHHHTTCGG--GCCCHHHHHHHHHH
T ss_pred cCCCeEEEeCCCCCHHHHHHHHHHHHHcCCCEEEEEEeCCHHHHHHHHhcccc--CCCCHHHHHHHHHH
Confidence 4567899999765211 123221 1 2789999999999999988864 23344444444443
No 102
>1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase like domain, protein binding; 1.31A {Homo sapiens} SCOP: c.37.1.1
Probab=71.84 E-value=1.2 Score=34.34 Aligned_cols=81 Identities=11% Similarity=0.067 Sum_probs=44.0
Q ss_pred CCcEEEEeccccCCChhhhcc--CCeEEEEECCHHHHHHHHHhhcccccCCCHHHHHHHHHhccccchhhhccccCCCcc
Q 027528 32 PSDVILLEGILVFHDSRVREL--MNMKIFVDTDADVRLARRIRRDTVEKGRDIATVLDQYSKFVKPAFDDFILPTKKYAD 109 (222)
Q Consensus 32 ~~~vvIvEGi~~l~~~~l~~~--~D~~Ifvd~d~d~rl~Rri~RD~~~rg~~~~~~~~~~~~~~~p~~~~~i~p~~~~AD 109 (222)
...++|++.-..-. ..++.. -...||+++|...++.|| ++.++++.+...+.... ....+|
T Consensus 95 ~g~~vil~id~~g~-~~~~~~~~~~~~ifi~~p~~~~l~~R------------~~~i~r~~~~~~~~~~~----~~~~~d 157 (180)
T 1kgd_A 95 QGLIAILDVEPQAL-KVLRTAEFAPFVVFIAAPTITPGLNE------------DESLQRLQKESDILQRT----YAHYFD 157 (180)
T ss_dssp TTCEEEEECCGGGH-HHHSSTTTCEEEEEEECCSCCTTSCC------------SHHHHHHHHHHHHHHHH----HGGGCS
T ss_pred CCCeEEEEECHHHH-HHHHHhCCCcEEEEEECCCHHHHHhh------------HHHHHHHHHHHHHHHHh----hhCCCc
Confidence 45677775322111 233332 248899999876655554 22335554432232211 346799
Q ss_pred EEEcCCCCchhhHHHHHHHHH
Q 027528 110 IIIPRGGDNHVAIDLIVQHIR 130 (222)
Q Consensus 110 lvi~~~~~~~~~~~~~~~~i~ 130 (222)
.+|.|. +.+.+.+.+.+.|.
T Consensus 158 ~~i~n~-~~~~~~~~l~~~i~ 177 (180)
T 1kgd_A 158 LTIINN-EIDETIRHLEEAVE 177 (180)
T ss_dssp EEEECS-SHHHHHHHHHHHHH
T ss_pred EEEECc-CHHHHHHHHHHHHH
Confidence 999876 44556666655554
No 103
>1m7g_A Adenylylsulfate kinase; APS kinase, transferase, sulfate Met nucleotide 2 kinase; HET: AV2 ADX ADP; 1.43A {Penicillium chrysogenum} SCOP: c.37.1.4 PDB: 1d6j_A* 1m7h_A* 3cr7_A*
Probab=70.21 E-value=5.1 Score=31.40 Aligned_cols=16 Identities=25% Similarity=0.472 Sum_probs=14.9
Q ss_pred CeEEEEECCHHHHHHH
Q 027528 54 NMKIFVDTDADVRLAR 69 (222)
Q Consensus 54 D~~Ifvd~d~d~rl~R 69 (222)
++.||+++|.++.+.|
T Consensus 133 ~~vi~Ld~~~e~~~~R 148 (211)
T 1m7g_A 133 FVEVYVDVPVEVAEQR 148 (211)
T ss_dssp EEEEEEECCHHHHHTS
T ss_pred eEEEEEeCCHHHHHHh
Confidence 7899999999999888
No 104
>3tmk_A Thymidylate kinase; phosphotransferase; HET: T5A; 2.00A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 2tmk_A* 1tmk_A*
Probab=69.09 E-value=1.7 Score=35.30 Aligned_cols=76 Identities=16% Similarity=0.146 Sum_probs=42.2
Q ss_pred cCCeEEEE-ECCHHHHHHHHHhhcccccCCCHHHHHHHHHhccccchhhhccc---cCCCccEEEc-CCCCchhhHHHHH
Q 027528 52 LMNMKIFV-DTDADVRLARRIRRDTVEKGRDIATVLDQYSKFVKPAFDDFILP---TKKYADIIIP-RGGDNHVAIDLIV 126 (222)
Q Consensus 52 ~~D~~Ifv-d~d~d~rl~Rri~RD~~~rg~~~~~~~~~~~~~~~p~~~~~i~p---~~~~ADlvi~-~~~~~~~~~~~~~ 126 (222)
.-|+.||+ |+|+++.+.|.-.| +...|. ..|...++-+|.++... ....--++|+ .+..-+...+.+.
T Consensus 125 ~PDlti~L~dv~pe~~~~R~~~~-----~dr~E~--~~f~~rvr~~Y~~la~~~~~~~~~~~~vID~a~~s~eeV~~~I~ 197 (216)
T 3tmk_A 125 KPDLTLFLSTQDVDNNAEKSGFG-----DERYET--VKFQEKVKQTFMKLLDKEIRKGDESITIVDVTNKGIQEVEALIW 197 (216)
T ss_dssp CCSEEEEEECSCCSCGGGCCSSS-----CCTTCC--HHHHHHHHHHHHHHHHHHHHTTCCSEEEEECTTCCHHHHHHHHH
T ss_pred CCCEEEEEeCCCHHHHHHHhccC-----cccccH--HHHHHHHHHHHHHHHHhccccCCCCEEEEeCCCCCHHHHHHHHH
Confidence 46899999 99999988774221 111222 24555677777776543 1222346677 4333222234455
Q ss_pred HHHHHHhc
Q 027528 127 QHIRTKLG 134 (222)
Q Consensus 127 ~~i~~~l~ 134 (222)
+.|.+.|.
T Consensus 198 ~~i~~~l~ 205 (216)
T 3tmk_A 198 QIVEPVLS 205 (216)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHh
Confidence 55555554
No 105
>3czq_A Putative polyphosphate kinase 2; structural genomics, APC6299, PSI-2, structure initiative; HET: MSE GOL; 2.23A {Sinorhizobium meliloti}
Probab=67.23 E-value=9.1 Score=32.78 Aligned_cols=83 Identities=16% Similarity=0.197 Sum_probs=51.0
Q ss_pred cCCeEEEEECCHHHHHHHHHhhcc---cccCCCHHHHH--HHHHhccccchhhhcccc-CCCccEEEcCCCCchhhHHHH
Q 027528 52 LMNMKIFVDTDADVRLARRIRRDT---VEKGRDIATVL--DQYSKFVKPAFDDFILPT-KKYADIIIPRGGDNHVAIDLI 125 (222)
Q Consensus 52 ~~D~~Ifvd~d~d~rl~Rri~RD~---~~rg~~~~~~~--~~~~~~~~p~~~~~i~p~-~~~ADlvi~~~~~~~~~~~~~ 125 (222)
..++|+|++++.+..+.|.-.|-. +....++.+.. +.|.. +...|+.++.-+ ...|-..|=.+.+...+--.+
T Consensus 190 ~~~lKf~L~Is~eeq~kR~~~R~~dp~k~Wk~s~~D~~~~~~~~~-y~~a~~~ml~~T~t~~apW~vIda~dk~~arl~v 268 (304)
T 3czq_A 190 IHLFKFWINIGREMQLKRFHDRRHDPLKIWKLSPMDIAALSKWDD-YTGKRDRMLKETHTEHGPWAVIRGNDKRRSRINV 268 (304)
T ss_dssp CEEEEEEEECCHHHHHHHHHHHHHCTTTGGGCCHHHHHGGGGHHH-HHHHHHHHHHHHCCSSSCEEEEECSSHHHHHHHH
T ss_pred CeeEEEEEECCHHHHHHHHHHhhcCcccccCCCHHHHHHHHHHHH-HHHHHHHHHHhhccCCCCEEEEECCCcchHHHHH
Confidence 467999999999999999776621 11123555554 33433 344566666544 355665544344545566677
Q ss_pred HHHHHHHhcc
Q 027528 126 VQHIRTKLGQ 135 (222)
Q Consensus 126 ~~~i~~~l~~ 135 (222)
+++|.+.|..
T Consensus 269 ~~~Il~~l~~ 278 (304)
T 3czq_A 269 IRHMLTKLDY 278 (304)
T ss_dssp HHHHHHHCCC
T ss_pred HHHHHHHHhh
Confidence 7888887763
No 106
>1dek_A Deoxynucleoside monophosphate kinase; transferase, phosphotransferase; HET: DGP; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1 PDB: 1del_A*
Probab=66.08 E-value=19 Score=29.48 Aligned_cols=24 Identities=17% Similarity=0.068 Sum_probs=21.6
Q ss_pred cCCeEEEEECCHHHHHHHHHhhcc
Q 027528 52 LMNMKIFVDTDADVRLARRIRRDT 75 (222)
Q Consensus 52 ~~D~~Ifvd~d~d~rl~Rri~RD~ 75 (222)
..|..|.++++.+..++|..+|+.
T Consensus 167 ~~d~VvVvdv~~~~qieRl~~rg~ 190 (241)
T 1dek_A 167 GYDYYIVPDTRQDHEMDAARAMGA 190 (241)
T ss_dssp SCSEEEECCCCSHHHHHHHHHTTC
T ss_pred cCCEEEEEcCCcHHHHHHHHHCCC
Confidence 468999999999999999999974
No 107
>1aky_A Adenylate kinase; ATP:AMP phosphotransferase, myokinase, transferase (phosphotransferase); HET: AP5; 1.63A {Saccharomyces cerevisiae} SCOP: c.37.1.1 g.41.2.1 PDB: 2aky_A* 3aky_A* 1dvr_A*
Probab=65.69 E-value=25 Score=27.33 Aligned_cols=23 Identities=22% Similarity=0.209 Sum_probs=20.6
Q ss_pred cCCeEEEEECCHHHHHHHHHhhc
Q 027528 52 LMNMKIFVDTDADVRLARRIRRD 74 (222)
Q Consensus 52 ~~D~~Ifvd~d~d~rl~Rri~RD 74 (222)
..|+.||+++|.++.+.|...|.
T Consensus 111 ~~d~vi~L~~~~e~~~~R~~~r~ 133 (220)
T 1aky_A 111 PLEKAIELKVDDELLVARITGRL 133 (220)
T ss_dssp CCCEEEEEECCHHHHHHHHHTEE
T ss_pred CCCEEEEEECCHHHHHHHHhCCC
Confidence 46799999999999999998885
No 108
>1p6x_A Thymidine kinase; P-loop, LID, transferase; HET: THM; 2.00A {Equid herpesvirus 4} SCOP: c.37.1.1 PDB: 1p72_A* 1p73_A* 1p75_A*
Probab=64.26 E-value=1.9 Score=37.51 Aligned_cols=21 Identities=10% Similarity=0.082 Sum_probs=18.8
Q ss_pred CCeEEEEECCHHHHHHHHHhh
Q 027528 53 MNMKIFVDTDADVRLARRIRR 73 (222)
Q Consensus 53 ~D~~Ifvd~d~d~rl~Rri~R 73 (222)
-|+.||+|+|+++.+.|.-.|
T Consensus 158 PDLtIyLd~~pe~~l~RI~~R 178 (334)
T 1p6x_A 158 GGNIVVTTLNVEEHIRRLRTR 178 (334)
T ss_dssp TEEEEEEECCHHHHHHHHHHH
T ss_pred CCEEEEEECCHHHHHHHHHhc
Confidence 589999999999999997666
No 109
>3uie_A Adenylyl-sulfate kinase 1, chloroplastic; rossmann fold, transferase-transferase complex; HET: ADX ANP; 1.79A {Arabidopsis thaliana} SCOP: c.37.1.0 PDB: 4fxp_A*
Probab=59.86 E-value=25 Score=26.96 Aligned_cols=39 Identities=21% Similarity=0.305 Sum_probs=24.2
Q ss_pred CCcEEEEeccccCC--ChhhhccCC----eEEEEECCHHHHHHHH
Q 027528 32 PSDVILLEGILVFH--DSRVRELMN----MKIFVDTDADVRLARR 70 (222)
Q Consensus 32 ~~~vvIvEGi~~l~--~~~l~~~~D----~~Ifvd~d~d~rl~Rr 70 (222)
+...+|+.+..... ...++..+. ..||+++|.+++..|+
T Consensus 96 ~~~~vi~~~~~~~~~~r~~~~~~~~~~~~~~v~L~a~~e~~~~R~ 140 (200)
T 3uie_A 96 AGIICIASLISPYRTDRDACRSLLPEGDFVEVFMDVPLSVCEARD 140 (200)
T ss_dssp TTCEEEEECCCCCHHHHHHHHHTSCTTSEEEEEECCCHHHHHHHC
T ss_pred CCceEEEecCCchHHHHHHHHHhcCCCCEEEEEEeCCHHHHHHhc
Confidence 33455555544421 123444443 6799999999999885
No 110
>1e4v_A Adenylate kinase; transferase(phosphotransferase); HET: AP5; 1.85A {Escherichia coli} SCOP: c.37.1.1 g.41.2.1 PDB: 1e4y_A* 1ake_A* 1ank_A* 2eck_A* 3hpq_A* 4ake_A 3hpr_A*
Probab=59.14 E-value=13 Score=29.01 Aligned_cols=24 Identities=13% Similarity=0.196 Sum_probs=21.0
Q ss_pred cCCeEEEEECCHHHHHHHHHhhcc
Q 027528 52 LMNMKIFVDTDADVRLARRIRRDT 75 (222)
Q Consensus 52 ~~D~~Ifvd~d~d~rl~Rri~RD~ 75 (222)
..|+.||+++|.++.+.|...|..
T Consensus 102 ~~d~vi~l~~~~e~~~~R~~~R~~ 125 (214)
T 1e4v_A 102 NVDYVLEFDVPDELIVDRIVGRRV 125 (214)
T ss_dssp CCSEEEEEECCHHHHHHHHHTEEE
T ss_pred CCCEEEEEECCHHHHHHHHHCCcc
Confidence 368999999999999999988863
No 111
>3lnc_A Guanylate kinase, GMP kinase; ALS collaborative crystallography, emerald biostructures, ATP-binding, cytoplasm, nucleotide-binding; HET: 5GP; 1.95A {Anaplasma phagocytophilum}
Probab=58.94 E-value=7.9 Score=30.67 Aligned_cols=65 Identities=18% Similarity=0.145 Sum_probs=28.5
Q ss_pred eEEEEEC-CHHHHHHHHHhhcccccCCCHHHHHHHHHhccccchhhhccccCCCccEEEcCCCCchhhHHHHHHHHHHHh
Q 027528 55 MKIFVDT-DADVRLARRIRRDTVEKGRDIATVLDQYSKFVKPAFDDFILPTKKYADIIIPRGGDNHVAIDLIVQHIRTKL 133 (222)
Q Consensus 55 ~~Ifvd~-d~d~rl~Rri~RD~~~rg~~~~~~~~~~~~~~~p~~~~~i~p~~~~ADlvi~~~~~~~~~~~~~~~~i~~~l 133 (222)
..||+.. +.++...|...||. .+.+++.++.. ...+... ....||+||.|+ + ++.+.+.+...+
T Consensus 142 ~~v~v~~~~~~~l~~Rl~~R~~----~~~~~i~~rl~-~~~~~~~-----~~~~~d~vI~n~-~----~e~~~~~l~~~i 206 (231)
T 3lnc_A 142 VSIFIMPPSMEELRRRLCGRRA----DDSEVVEARLK-GAAFEIS-----HCEAYDYVIVNE-D----IEETADRISNIL 206 (231)
T ss_dssp EEEEEECSCHHHHHHC------------------CHH-HHHHHHT-----TGGGSSEEEECS-S----HHHHHHHHHHHH
T ss_pred EEEEEECCcHHHHHHHHHHcCC----CCHHHHHHHHH-HHHHHHh-----hhcCCeEEEECc-C----HHHHHHHHHHHH
Confidence 5678766 55666666666652 34455443333 2333322 356799999865 3 334444444444
Q ss_pred c
Q 027528 134 G 134 (222)
Q Consensus 134 ~ 134 (222)
.
T Consensus 207 ~ 207 (231)
T 3lnc_A 207 R 207 (231)
T ss_dssp H
T ss_pred H
Confidence 3
No 112
>1ex7_A Guanylate kinase; substrate-induced FIT, domain movement, GMP, ATP, substrate specificity, X-RAY diffraction, transferase; HET: 5GP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1ex6_A* 1gky_A* 3sqk_A 4f4j_A
Probab=58.16 E-value=28 Score=27.14 Aligned_cols=54 Identities=13% Similarity=0.187 Sum_probs=32.7
Q ss_pred CCcEEEEeccccCCChhhhccC---CeEEEEECCHHHHHHHHHhhcccccCC-CHHHHHHHHH
Q 027528 32 PSDVILLEGILVFHDSRVRELM---NMKIFVDTDADVRLARRIRRDTVEKGR-DIATVLDQYS 90 (222)
Q Consensus 32 ~~~vvIvEGi~~l~~~~l~~~~---D~~Ifvd~d~d~rl~Rri~RD~~~rg~-~~~~~~~~~~ 90 (222)
....+|+++-..-. ..++..+ -..||+..|....|.+|+.. ||. +.+++..+..
T Consensus 91 ~g~~vil~id~~g~-~~~k~~~~~~~~~Ifi~pps~e~L~~RL~~----Rg~e~~e~i~~Rl~ 148 (186)
T 1ex7_A 91 SGKTCILDIDMQGV-KSVKAIPELNARFLFIAPPSVEDLKKRLEG----RGTETEESINKRLS 148 (186)
T ss_dssp HTSEEEEECCHHHH-HHHHTCGGGCCEEEEEECSCHHHHHHHHHH----HCCSCHHHHHHHHH
T ss_pred CCCEEEecCCHHHH-HHHHHhcccCceEEEEeCCCHHHHHHHHHh----cCCCCHHHHHHHHH
Confidence 34677787654432 4555543 36799999887777777653 464 4455544443
No 113
>3be4_A Adenylate kinase; malaria, cryptosporidium parvum nonprotein inhibitors, nucleotide-binding, transferase; HET: AP5; 1.60A {Cryptosporidium parvum iowa II}
Probab=55.40 E-value=41 Score=26.15 Aligned_cols=23 Identities=17% Similarity=0.202 Sum_probs=20.5
Q ss_pred cCCeEEEEECCHHHHHHHHHhhc
Q 027528 52 LMNMKIFVDTDADVRLARRIRRD 74 (222)
Q Consensus 52 ~~D~~Ifvd~d~d~rl~Rri~RD 74 (222)
..|+.||+++|.++.+.|...|.
T Consensus 111 ~~d~vi~L~~~~e~~~~Rl~~R~ 133 (217)
T 3be4_A 111 SLTSVIYFEIDDSEIIERISGRC 133 (217)
T ss_dssp CCCEEEEEECCHHHHHHHHHTEE
T ss_pred CCCEEEEEECCHHHHHHHHHcCC
Confidence 36899999999999999998875
No 114
>1x6v_B Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthethase 1; transferase, ATP sulfurylase, APS kinase, PAPS; HET: ADP; 1.75A {Homo sapiens} SCOP: b.122.1.3 c.26.1.5 c.37.1.4 PDB: 1xjq_B* 1xnj_B* 2qjf_A* 2ofx_A* 2ofw_A*
Probab=49.53 E-value=32 Score=32.32 Aligned_cols=68 Identities=9% Similarity=0.307 Sum_probs=34.9
Q ss_pred CeEEEEECCHHHHHHHHHhhccc-ccCCCHHHHHHHHHhccccchhhhccccCCCccEEEcCCCCc-hhhHHHHHHHHHH
Q 027528 54 NMKIFVDTDADVRLARRIRRDTV-EKGRDIATVLDQYSKFVKPAFDDFILPTKKYADIIIPRGGDN-HVAIDLIVQHIRT 131 (222)
Q Consensus 54 D~~Ifvd~d~d~rl~Rri~RD~~-~rg~~~~~~~~~~~~~~~p~~~~~i~p~~~~ADlvi~~~~~~-~~~~~~~~~~i~~ 131 (222)
++.||+++|.++++.|...+-.. .|... ...|.. ..+.|+. ...||++|+.+..+ +...+.|++.+..
T Consensus 153 ~~vV~Ldap~Evl~~Rl~r~ly~~aR~~~----~~~~~~-~~~~Ye~-----p~~~dlvIDts~~s~eevv~~Il~~L~~ 222 (630)
T 1x6v_B 153 FFEVFVDAPLHVCEQRDVKGLYKKARAGE----IKGFTG-IDSEYEK-----PEAPELVLKTDSCDVNDCVQQVVELLQE 222 (630)
T ss_dssp EEEEEEECCHHHHHHHCTTSHHHHHTTC--------CBT-TTBCCCC-----CSSCSEEEETTSSCHHHHHHHHHHHHHH
T ss_pred eEEEEEECCHHHHHHHhccccchhhhhhh----HHHHHH-hhhhhcc-----cCCCcEEEECCCCCHHHHHHHHHHHHHh
Confidence 57999999999998885422111 01111 112322 2333321 25789999865322 2333445555443
No 115
>3rhf_A Putative polyphosphate kinase 2 family protein; PSI-biology, MCSG, structural genomics, midwest center for S genomics; HET: PGE FLC PG4; 2.45A {Arthrobacter aurescens}
Probab=41.80 E-value=60 Score=27.45 Aligned_cols=83 Identities=16% Similarity=0.181 Sum_probs=48.9
Q ss_pred cCCeEEEEECCHHHHHHHHHhh---cccccCCCHHHHHH--HHHhccccchhhhcccc-CCCcc-EEEcCCCCchhhHHH
Q 027528 52 LMNMKIFVDTDADVRLARRIRR---DTVEKGRDIATVLD--QYSKFVKPAFDDFILPT-KKYAD-IIIPRGGDNHVAIDL 124 (222)
Q Consensus 52 ~~D~~Ifvd~d~d~rl~Rri~R---D~~~rg~~~~~~~~--~~~~~~~p~~~~~i~p~-~~~AD-lvi~~~~~~~~~~~~ 124 (222)
..-+|+|++.+.+....|...| -.+....++.++.+ .|... ...+++.+.-+ ..+|- .||+ +.+-..+--.
T Consensus 179 ~~ilKf~LhIskeEQ~kR~~~R~~dP~k~WK~s~~D~~~r~~wd~Y-~~a~e~ml~~T~t~~APW~VV~-addK~~arl~ 256 (289)
T 3rhf_A 179 TTIVKVMLNISKDEQKKRLIARLDDPSKHWKYSRGDLAERAYWDDY-MDAYSVAFEKTSTEIAPWHVVP-ANKKWYARIA 256 (289)
T ss_dssp EEEEEEEEECCHHHHHHHHHHHHHCGGGGGGCCHHHHHHHTTHHHH-HHHHHHHHHHHCCSSSCEEEEE-CSSHHHHHHH
T ss_pred CEEEEEEEECCHHHHHHHHHHHhcCCcccccCCHHHHHHHHHHHHH-HHHHHHHHHHhCCCCCCeEEEe-CCCHHHHHHH
Confidence 3449999999999988876654 22234467777652 24432 33445555554 35565 4555 3344444445
Q ss_pred HHHHHHHHhccC
Q 027528 125 IVQHIRTKLGQH 136 (222)
Q Consensus 125 ~~~~i~~~l~~~ 136 (222)
++++|.+.|+..
T Consensus 257 v~~~ll~~Le~~ 268 (289)
T 3rhf_A 257 VQQLLLDALGGL 268 (289)
T ss_dssp HHHHHHHHHHTT
T ss_pred HHHHHHHHHHHc
Confidence 667777777643
No 116
>1m8p_A Sulfate adenylyltransferase; rossmann fold, phosphosulfate binding, T-state; HET: PPS; 2.60A {Penicillium chrysogenum} SCOP: b.122.1.3 c.26.1.5 c.37.1.15 PDB: 1i2d_A*
Probab=41.29 E-value=48 Score=30.62 Aligned_cols=16 Identities=13% Similarity=0.027 Sum_probs=14.7
Q ss_pred eEEEEECCHHHHHHHH
Q 027528 55 MKIFVDTDADVRLARR 70 (222)
Q Consensus 55 ~~Ifvd~d~d~rl~Rr 70 (222)
+.||+++|.+++..|+
T Consensus 498 ~~V~Lda~~ev~~~R~ 513 (573)
T 1m8p_A 498 FLVHVATPLEHCEQSD 513 (573)
T ss_dssp EEEEECCCHHHHHHHC
T ss_pred EEEEEeCCHHHHHHHh
Confidence 8999999999999883
No 117
>3tau_A Guanylate kinase, GMP kinase; structural genomics, center for structural genomics of infec diseases, csgid, putative guanylate kinase; HET: MSE; 2.05A {Listeria monocytogenes}
Probab=41.18 E-value=12 Score=29.32 Aligned_cols=86 Identities=20% Similarity=0.168 Sum_probs=40.5
Q ss_pred CCcEEEEeccccCCChhhhc-cCC-eEEEEECC-HHHHHHHHHhhcccccCCCHHHHHHHHHhccccchhhhccccCCCc
Q 027528 32 PSDVILLEGILVFHDSRVRE-LMN-MKIFVDTD-ADVRLARRIRRDTVEKGRDIATVLDQYSKFVKPAFDDFILPTKKYA 108 (222)
Q Consensus 32 ~~~vvIvEGi~~l~~~~l~~-~~D-~~Ifvd~d-~d~rl~Rri~RD~~~rg~~~~~~~~~~~~~~~p~~~~~i~p~~~~A 108 (222)
....+|+++-..-. ..++. +.+ ..||+.++ .++...|...|+. .+.+++..+... .... .+....+
T Consensus 98 ~g~~vild~~~~g~-~~~~~~~~~~~~i~i~~ps~~~l~~Rl~~R~~----~~~e~i~~Rl~~-~~~e-----~~~~~~~ 166 (208)
T 3tau_A 98 AGVDIFLEIEVQGA-MQVRKAMPEGIFIFLTPPDLSELKNRIIGRGT----ESMEVVEERMET-AKKE-----IEMMASY 166 (208)
T ss_dssp TTCCEEEECCHHHH-HHHHHHCTTSEEEEEECTTTTTSSCC-----------CCHHHHHHHHH-HHHH-----HHHGGGS
T ss_pred cCCeEEEEeeHHHH-HHHHHhCCCeEEEEEeCCCHHHHHHHHHhcCC----CCHHHHHHHHHH-HHHH-----HHhhccC
Confidence 33456665422211 23333 333 68999977 5666666556642 355666555433 2211 1334578
Q ss_pred cEEEcCCCCchhhHHHHHHHHHHHh
Q 027528 109 DIIIPRGGDNHVAIDLIVQHIRTKL 133 (222)
Q Consensus 109 Dlvi~~~~~~~~~~~~~~~~i~~~l 133 (222)
|.+|.|+ + ++..++.|...+
T Consensus 167 d~vivN~-~----~~~~~~~l~~~i 186 (208)
T 3tau_A 167 DYAVVND-V----VANAVQKIKGIV 186 (208)
T ss_dssp SEEEECS-S----HHHHHHHHHHHH
T ss_pred CEEEECc-C----HHHHHHHHHHHH
Confidence 9998865 3 334444444444
No 118
>3czp_A Putative polyphosphate kinase 2; PPK2, MCSG, PSI-2, structural protein structure initiative, midwest center for structural genomics; HET: MSE; 2.00A {Pseudomonas aeruginosa PAO1}
Probab=37.88 E-value=20 Score=32.76 Aligned_cols=80 Identities=15% Similarity=0.264 Sum_probs=42.8
Q ss_pred cCCeEEEEECCHHHHHHHHHhhccc---ccCCCHHHHH--HHHHhccccchhhhcccc-CCCcc-EEEcCCCCchh----
Q 027528 52 LMNMKIFVDTDADVRLARRIRRDTV---EKGRDIATVL--DQYSKFVKPAFDDFILPT-KKYAD-IIIPRGGDNHV---- 120 (222)
Q Consensus 52 ~~D~~Ifvd~d~d~rl~Rri~RD~~---~rg~~~~~~~--~~~~~~~~p~~~~~i~p~-~~~AD-lvi~~~~~~~~---- 120 (222)
..++|+|++.+.+....|...|-.. ....++.++. +.|... ...++.++.-+ ..+|- .||+.. +...
T Consensus 404 ~~i~Kf~L~is~eeQ~~R~~~R~~~p~k~Wk~s~~D~~~~~~w~~y-~~a~~~~l~~T~t~~APW~vI~a~-dk~~arl~ 481 (500)
T 3czp_A 404 IIVVKFWLAIDKQTQMERFKEREKTPYKRYKITEEDWRNRDKWDQY-VDAVGDMVDRTSTEIAPWTLVEAN-DKRFARVK 481 (500)
T ss_dssp EEEEEEEEECCHHHHHHHHHHHHHSSCTTSCCCSSTTTGGGGHHHH-HHHHHHHHHHHCCSSSCEEEEECS-SHHHHHHH
T ss_pred CeEEEEEEECCHHHHHHHHHHHhcCCcccCCCCHHHHHHHHhHHHH-HHHHHHHHHHhccCCCCEEEEECC-CccchHHH
Confidence 3679999999999999998877321 1113333332 233332 22344444443 45565 445533 4223
Q ss_pred hHHHHHHHHHHHh
Q 027528 121 AIDLIVQHIRTKL 133 (222)
Q Consensus 121 ~~~~~~~~i~~~l 133 (222)
.++.|++.|...|
T Consensus 482 v~~~i~~~l~~~l 494 (500)
T 3czp_A 482 VLRTINDAIEAAY 494 (500)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 3344555554444
No 119
>1z6g_A Guanylate kinase; structural genomics, SGC, structural genom consortium, transferase; HET: EPE; 2.18A {Plasmodium falciparum}
Probab=36.12 E-value=98 Score=24.08 Aligned_cols=68 Identities=10% Similarity=0.106 Sum_probs=38.1
Q ss_pred eEEEEECCHHHHHHHHH-hhcccccCCCHHHHHHHHHhccccchhhhccccCCCccEEEcCCCCchhhHHHHHHHHHH
Q 027528 55 MKIFVDTDADVRLARRI-RRDTVEKGRDIATVLDQYSKFVKPAFDDFILPTKKYADIIIPRGGDNHVAIDLIVQHIRT 131 (222)
Q Consensus 55 ~~Ifvd~d~d~rl~Rri-~RD~~~rg~~~~~~~~~~~~~~~p~~~~~i~p~~~~ADlvi~~~~~~~~~~~~~~~~i~~ 131 (222)
.++|++.+.-..+.+++ .|| ...++.+.++.....++.. +.. ...||.|+.+. +.+.+...+.+.|..
T Consensus 139 ~~~ll~~~~~~~Lde~~~~~d-----~~~~~~i~~~l~~~~~~~~-~~h--~~~~d~iiv~~-~~~ea~~~~~~ii~~ 207 (218)
T 1z6g_A 139 LYIFIKPPSTDVLLSRLLTRN-----TENQEQIQKRMEQLNIELH-EAN--LLNFNLSIIND-DLTLTYQQLKNYLLN 207 (218)
T ss_dssp EEEEEECSCHHHHHHHHHHTC-----CCCHHHHHHHHHHHHHHHH-HHT--TSCCSEEEECS-SHHHHHHHHHHHHHH
T ss_pred EEEEEeCcCHHHHHHHHHhcC-----CCCHHHHHHHHHHHHHHHH-hhc--ccCCCEEEECC-CHHHHHHHHHHHHHH
Confidence 78999877666665555 444 3333333333333344332 222 47899998765 445566666555543
No 120
>3czp_A Putative polyphosphate kinase 2; PPK2, MCSG, PSI-2, structural protein structure initiative, midwest center for structural genomics; HET: MSE; 2.00A {Pseudomonas aeruginosa PAO1}
Probab=35.44 E-value=15 Score=33.56 Aligned_cols=81 Identities=10% Similarity=0.150 Sum_probs=40.9
Q ss_pred cCCeEEEEECCHHHHHHHHHhhcccccC---CCHHHHH--HHHHhccccchhhhccc-cCCCccE-EEcCCCCch----h
Q 027528 52 LMNMKIFVDTDADVRLARRIRRDTVEKG---RDIATVL--DQYSKFVKPAFDDFILP-TKKYADI-IIPRGGDNH----V 120 (222)
Q Consensus 52 ~~D~~Ifvd~d~d~rl~Rri~RD~~~rg---~~~~~~~--~~~~~~~~p~~~~~i~p-~~~~ADl-vi~~~~~~~----~ 120 (222)
..++|+|++.+.+....|...|-..-.+ .++.++. +.|... ...++.++.- ...+|.. ||+.. +.. .
T Consensus 147 ~~i~KffL~is~eeq~kRl~~R~~~p~k~Wk~s~~D~~~~~~~~~Y-~~a~e~~l~~T~t~~APW~vI~a~-dk~~arl~ 224 (500)
T 3czp_A 147 ALLFKFWFHLSKKQLKERLKALEKDPQHSWKLSPLDWKQSEVYDRF-VHYGERVLRRTSRDYAPWYVVEGA-DERYRALT 224 (500)
T ss_dssp CEEEEEEEECCHHHHHHCC-------------CSSCTTSHHHHHHH-HHHHHHHHHHHCBTTBCEEEEECS-CHHHHHHH
T ss_pred CeEEEEEEECCHHHHHHHHHHHhcCCcccCCCCHHHHHHHHhHHHH-HHHHHHHHHhhcCCCCCEEEEECC-CcchhHHH
Confidence 3569999999999999998877321111 2222221 334432 2346666663 3566664 45543 422 3
Q ss_pred hHHHHHHHHHHHhc
Q 027528 121 AIDLIVQHIRTKLG 134 (222)
Q Consensus 121 ~~~~~~~~i~~~l~ 134 (222)
.++.|++.|...|.
T Consensus 225 v~~~il~~l~~~l~ 238 (500)
T 3czp_A 225 VGRILLEGLQAALA 238 (500)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 44556666665554
No 121
>3umf_A Adenylate kinase; rossmann fold, transferase; 2.05A {Schistosoma mansoni}
Probab=33.68 E-value=89 Score=24.85 Aligned_cols=94 Identities=19% Similarity=0.303 Sum_probs=47.3
Q ss_pred CcEEEEeccccCCC--hhh---hccCCeEEEEECCHHHHHHHHHhhcccccCCC---HHHHHHH---HHhccccchhhhc
Q 027528 33 SDVILLEGILVFHD--SRV---RELMNMKIFVDTDADVRLARRIRRDTVEKGRD---IATVLDQ---YSKFVKPAFDDFI 101 (222)
Q Consensus 33 ~~vvIvEGi~~l~~--~~l---~~~~D~~Ifvd~d~d~rl~Rri~RD~~~rg~~---~~~~~~~---~~~~~~p~~~~~i 101 (222)
..-+|++|.=--.. ..+ -.-.|..||+++|.++.+.|...|-.. .+|. ++.+.++ |.....|-.+.|
T Consensus 108 ~~g~ilDGfPRt~~Qa~~l~~~~~~~~~vi~l~v~~e~~~~Rl~~R~~~-~~R~DD~~e~i~~Rl~~Y~~~t~pl~~~Y- 185 (217)
T 3umf_A 108 NCHFLIDGYPRELDQGIKFEKEVCPCLCVINFDVSEEVMRKRLLKRAET-SNRVDDNEETIVKRFRTFNELTKPVIEHY- 185 (217)
T ss_dssp CSEEEEETBCSSHHHHHHHHHHTCCCSEEEEEECCHHHHHHHHSCC-------CHHHHHHHHHHHHHHHHHTHHHHHHH-
T ss_pred ccCcccccCCCcHHHHHHHHHhCCccCEEEeccCCHHHHHHHHhccccc-CCCCCCCHHHHHHHHHHHHHHHHHHHHHH-
Confidence 45688898421000 111 123679999999999999998887432 2332 2333332 444444433222
Q ss_pred cccCCCcc-EEEcCCCCchhhHHHHHHHHHHHhcc
Q 027528 102 LPTKKYAD-IIIPRGGDNHVAIDLIVQHIRTKLGQ 135 (222)
Q Consensus 102 ~p~~~~AD-lvi~~~~~~~~~~~~~~~~i~~~l~~ 135 (222)
. +.-- +.|+... .++.|.+.|.+.|++
T Consensus 186 ~---~~~~l~~Idg~~----~~eeV~~~I~~~l~k 213 (217)
T 3umf_A 186 K---QQNKVITIDASG----TVDAIFDKVNHELQK 213 (217)
T ss_dssp H---TTTCEEEEETTS----CHHHHHHHHHHHHHT
T ss_pred H---hcCCEEEEECCC----CHHHHHHHHHHHHHH
Confidence 1 1112 2355332 355666777766654
No 122
>3sr0_A Adenylate kinase; phosphoryl transfer analogue, ALF4, transferase (phosphotran phosphoryl transfer, nucleotide-binding; HET: ADP AMP; 1.56A {Aquifex aeolicus} PDB: 2rh5_A 2rgx_A*
Probab=31.89 E-value=1.6e+02 Score=22.93 Aligned_cols=22 Identities=14% Similarity=0.280 Sum_probs=20.2
Q ss_pred CCeEEEEECCHHHHHHHHHhhc
Q 027528 53 MNMKIFVDTDADVRLARRIRRD 74 (222)
Q Consensus 53 ~D~~Ifvd~d~d~rl~Rri~RD 74 (222)
.|..|++++|.++.+.|...|-
T Consensus 104 ~~~vi~l~v~~e~l~~Rl~~R~ 125 (206)
T 3sr0_A 104 VDHVLLFEVPDEVVIERLSGRR 125 (206)
T ss_dssp CCEEEEEECCHHHHHHHHHTEE
T ss_pred cceeeecCCCHHHHHHHHhCCc
Confidence 6889999999999999999884
No 123
>1osn_A Thymidine kinase, VZV-TK; chickenpox, BVDU-MP, transferase; HET: BVP ADP; 3.20A {Human herpesvirus 3} SCOP: c.37.1.1
Probab=28.11 E-value=10 Score=33.00 Aligned_cols=21 Identities=14% Similarity=0.121 Sum_probs=17.0
Q ss_pred CCeEEEEECCHHHHHHHHHhh
Q 027528 53 MNMKIFVDTDADVRLARRIRR 73 (222)
Q Consensus 53 ~D~~Ifvd~d~d~rl~Rri~R 73 (222)
-|+.||+|+|+++.+.|.-.|
T Consensus 167 PDltI~Ld~~pe~~l~RI~~R 187 (341)
T 1osn_A 167 GTNLVVCTVSLPSHLSRVSKR 187 (341)
T ss_dssp CCEEEEEECCHHHHHHHCC--
T ss_pred CCeEEEEeCCHHHHHHHHHhh
Confidence 489999999999999996544
No 124
>3gmt_A Adenylate kinase; ssgcid, ATP-BIN cytoplasm, nucleotide biosynthesis, nucleotide-BIND transferase, structural genomics; 2.10A {Burkholderia pseudomallei 1710B}
Probab=25.87 E-value=43 Score=27.21 Aligned_cols=42 Identities=17% Similarity=0.198 Sum_probs=29.3
Q ss_pred cEEEEeccccCCC--hhhhc---cCCeEEEEECCHHHHHHHHHhhcc
Q 027528 34 DVILLEGILVFHD--SRVRE---LMNMKIFVDTDADVRLARRIRRDT 75 (222)
Q Consensus 34 ~vvIvEGi~~l~~--~~l~~---~~D~~Ifvd~d~d~rl~Rri~RD~ 75 (222)
+-+|++|.---.. +.+.. ..|..||+++|.++.+.|...|.+
T Consensus 87 ~g~ILDGfPRt~~Qa~~L~~~~~~~d~VI~Ldvp~e~l~~Rl~~R~~ 133 (230)
T 3gmt_A 87 NGYLFDGFPRTIAQADAMKEAGVAIDYVLEIDVPFSEIIERMSGRRT 133 (230)
T ss_dssp TCEEEESCCCSHHHHHHHHHTTCCCSEEEEECCCHHHHHHHHHTEEE
T ss_pred CCeEecCCCCcHHHHHHHHHhCCCccEEEEEeCCHHHHHHHHHcCCc
Confidence 3467899522110 12222 478999999999999999999964
No 125
>3cr8_A Sulfate adenylyltranferase, adenylylsulfate kinase; APS kinase, transferase, sulfate metabolism, nucleotide 2 kinase; 2.95A {Thiobacillus denitrificans}
Probab=24.95 E-value=95 Score=28.48 Aligned_cols=67 Identities=18% Similarity=0.352 Sum_probs=22.4
Q ss_pred eEEEEECCHHHHHHHHHhhcccccCCCHHHHHHHHHhccccchhhhccccCCCccEEEcCCCCc-hhhHHHHHHHHH
Q 027528 55 MKIFVDTDADVRLARRIRRDTVEKGRDIATVLDQYSKFVKPAFDDFILPTKKYADIIIPRGGDN-HVAIDLIVQHIR 130 (222)
Q Consensus 55 ~~Ifvd~d~d~rl~Rri~RD~~~rg~~~~~~~~~~~~~~~p~~~~~i~p~~~~ADlvi~~~~~~-~~~~~~~~~~i~ 130 (222)
+.||+++|.+++..|. .|..-. ......+..+.....| |..| ..||++|+.+..+ +..++.|++.+.
T Consensus 471 ~~V~L~~~~e~~~~R~-~r~l~~--~~~~~~i~~l~~~r~~----~e~P--~~adl~Idt~~~s~~e~v~~Il~~L~ 538 (552)
T 3cr8_A 471 VEIHVATPIETCESRD-RKGLYA--KARAGLIPEFTGVSDP----YEVP--ETPELAIDTTGLAIDEAVQQILLKLE 538 (552)
T ss_dssp EEEEECC--------------------------------CC----CCCC--SSCSEEECCSSCCHHHHHHHHHHHHH
T ss_pred EEEEEcCCHHHHHHhc-cccccc--cccHhHHHHHHhcccc----ccCC--CCCCEEEECCCCCHHHHHHHHHHHHH
Confidence 8999999999988873 332211 1111112222222222 2223 5689999855333 233444555543
No 126
>1e2k_A Thymidine kinase; transferase, antiviral drug, enzyme-prodrug gene therapy, sugar ring pucker; HET: TMC; 1.7A {Herpes simplex virus} SCOP: c.37.1.1 PDB: 1e2i_A* 1e2h_A* 1e2m_A* 1e2n_A* 1e2p_A* 1ki2_A* 1ki3_A* 1ki4_A* 1ki6_B* 1ki7_A* 1ki8_A* 3rdp_A* 2ki5_A* 1kim_A* 1qhi_A* 1p7c_A* 1vtk_A* 2vtk_A* 3vtk_A* 3f0t_A* ...
Probab=24.67 E-value=23 Score=30.48 Aligned_cols=20 Identities=15% Similarity=0.179 Sum_probs=16.8
Q ss_pred CeEEEEECCHHHHHHHHHhh
Q 027528 54 NMKIFVDTDADVRLARRIRR 73 (222)
Q Consensus 54 D~~Ifvd~d~d~rl~Rri~R 73 (222)
|+.+++|.|+++.+.|.-.|
T Consensus 156 dlt~lldl~pe~~l~RI~~R 175 (331)
T 1e2k_A 156 TNIVLGALPEDRHIDRLAKR 175 (331)
T ss_dssp CEEEEEECCHHHHHHHHHHS
T ss_pred eEEEEEcCCHHHHHHHHHhc
Confidence 57778899999999997666
No 127
>1s96_A Guanylate kinase, GMP kinase; E.coli, dimer, SAD, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.1 PDB: 2an9_A* 2anb_A* 2anc_A 2f3r_A* 2f3t_A*
Probab=24.65 E-value=2.5e+02 Score=21.90 Aligned_cols=82 Identities=18% Similarity=0.290 Sum_probs=45.0
Q ss_pred CCcEEEEeccccCCCh----hhhccC--CeEEEEECCHHHHHHHHHhhcccccC-CCHHHHHHHHHhccccchhhhcccc
Q 027528 32 PSDVILLEGILVFHDS----RVRELM--NMKIFVDTDADVRLARRIRRDTVEKG-RDIATVLDQYSKFVKPAFDDFILPT 104 (222)
Q Consensus 32 ~~~vvIvEGi~~l~~~----~l~~~~--D~~Ifvd~d~d~rl~Rri~RD~~~rg-~~~~~~~~~~~~~~~p~~~~~i~p~ 104 (222)
..+++|++ + ++ .+.+.+ ...||+.++.-..+.+|+ ..|| .+++++..++.+. .. + .+.
T Consensus 107 ~G~illLD----L-D~~~~~~i~~~l~~~~tI~i~th~~~~l~~Rl----~~rG~~~~e~i~~rl~~a-~~---e--~~~ 171 (219)
T 1s96_A 107 TGVDVFLD----I-DWQGAQQIRQKMPHARSIFILPPSKIELDRRL----RGRGQDSEEVIAKRMAQA-VA---E--MSH 171 (219)
T ss_dssp TTCEEEEE----C-CHHHHHHHHHHCTTCEEEEEECSSHHHHHHHH----HTTSCSCHHHHHHHHHHH-HH---H--HTT
T ss_pred cCCeEEEE----E-CHHHHHHHHHHccCCEEEEEECCCHHHHHHHH----HHcCCCCHHHHHHHHHHH-HH---H--Hhh
Confidence 35788888 2 32 344443 478999886544555555 2345 4677777666542 11 1 123
Q ss_pred CCCccEEEcCCCCchhhHHHHHHHH
Q 027528 105 KKYADIIIPRGGDNHVAIDLIVQHI 129 (222)
Q Consensus 105 ~~~ADlvi~~~~~~~~~~~~~~~~i 129 (222)
....|.+|.|. +-+.+.+.+.+.|
T Consensus 172 ~~~~d~~i~Nd-~l~~a~~~l~~ii 195 (219)
T 1s96_A 172 YAEYDYLIVND-DFDTALTDLKTII 195 (219)
T ss_dssp GGGSSEEEECS-SHHHHHHHHHHHH
T ss_pred ccCCCEEEECc-CHHHHHHHHHHHH
Confidence 35678888764 3334444444444
No 128
>1of1_A Thymidine kinase; transferase, antiviral drug, enzyme- prodrug gene, DNA synthesis, ATP-binding; HET: SCT; 1.95A {Herpes simplex virus} SCOP: c.37.1.1
Probab=20.42 E-value=32 Score=30.25 Aligned_cols=20 Identities=15% Similarity=0.179 Sum_probs=16.5
Q ss_pred CeEEEEECCHHHHHHHHHhh
Q 027528 54 NMKIFVDTDADVRLARRIRR 73 (222)
Q Consensus 54 D~~Ifvd~d~d~rl~Rri~R 73 (222)
|+.+++|.|+++.+.|.-.|
T Consensus 201 dlt~Lldl~pe~~l~RI~~R 220 (376)
T 1of1_A 201 TNIVLGALPEDRHIDRLAKR 220 (376)
T ss_dssp CEEEEEECCHHHHHHHHHHS
T ss_pred eEEEEecCCHHHHHHHHHhc
Confidence 47777899999999997666
No 129
>2ze6_A Isopentenyl transferase; crown GALL tumor, cytokinin biosynthesis; HET: DST AMP; 2.10A {Agrobacterium tumefaciens} PDB: 2ze5_A* 2ze7_A* 2ze8_A
Probab=20.07 E-value=52 Score=26.48 Aligned_cols=20 Identities=20% Similarity=0.056 Sum_probs=17.2
Q ss_pred eEEEEECCH-HHHHHHHHhhc
Q 027528 55 MKIFVDTDA-DVRLARRIRRD 74 (222)
Q Consensus 55 ~~Ifvd~d~-d~rl~Rri~RD 74 (222)
..+|+++|. +++..|...|.
T Consensus 119 ~~i~l~~~~~e~l~~Rl~~R~ 139 (253)
T 2ze6_A 119 HVKRLRLGDSDAFLTRAKQRV 139 (253)
T ss_dssp EEEECCCCCHHHHHHHHHHHH
T ss_pred EEEEecchhHHHHHHHHHHHH
Confidence 689999997 99988888885
Done!