Query 027530
Match_columns 222
No_of_seqs 218 out of 1718
Neff 9.0
Searched_HMMs 46136
Date Fri Mar 29 11:18:39 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/027530.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/027530hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF10294 Methyltransf_16: Puta 100.0 9E-31 1.9E-35 202.5 11.6 167 20-199 3-172 (173)
2 COG4123 Predicted O-methyltran 99.8 8.4E-20 1.8E-24 146.6 14.2 162 14-206 9-192 (248)
3 PF05175 MTS: Methyltransferas 99.8 7E-19 1.5E-23 135.8 16.5 136 22-186 1-144 (170)
4 COG2264 PrmA Ribosomal protein 99.8 3.4E-19 7.3E-24 146.6 15.3 157 21-208 129-288 (300)
5 KOG3201 Uncharacterized conser 99.8 1.7E-20 3.6E-25 139.0 5.5 158 32-208 3-166 (201)
6 PF06325 PrmA: Ribosomal prote 99.8 5.9E-19 1.3E-23 146.3 14.6 154 19-206 126-281 (295)
7 COG2227 UbiG 2-polyprenyl-3-me 99.8 1.4E-19 3.1E-24 143.1 8.1 109 63-188 58-167 (243)
8 KOG2793 Putative N2,N2-dimethy 99.8 2E-18 4.3E-23 138.6 14.6 168 31-205 49-225 (248)
9 COG3897 Predicted methyltransf 99.8 1.2E-18 2.5E-23 133.3 7.5 156 5-187 19-184 (218)
10 PRK15001 SAM-dependent 23S rib 99.7 1.3E-16 2.7E-21 136.7 17.5 147 11-183 187-341 (378)
11 PF12847 Methyltransf_18: Meth 99.7 4E-17 8.7E-22 117.0 10.4 104 64-182 1-111 (112)
12 TIGR00406 prmA ribosomal prote 99.7 3.3E-16 7.2E-21 130.5 17.0 156 20-207 125-282 (288)
13 TIGR00537 hemK_rel_arch HemK-r 99.7 4.4E-16 9.6E-21 121.1 16.5 138 42-211 8-168 (179)
14 COG2813 RsmC 16S RNA G1207 met 99.7 3.9E-16 8.4E-21 128.0 16.2 139 18-187 124-270 (300)
15 KOG1270 Methyltransferases [Co 99.7 1.4E-17 3.1E-22 132.8 6.7 108 63-187 88-200 (282)
16 PF13847 Methyltransf_31: Meth 99.7 3.6E-16 7.9E-21 118.4 13.7 109 64-187 3-115 (152)
17 PLN02396 hexaprenyldihydroxybe 99.7 2.1E-16 4.5E-21 133.1 12.6 109 63-186 130-239 (322)
18 PRK14967 putative methyltransf 99.7 3.3E-15 7.1E-20 120.2 17.8 154 23-208 7-184 (223)
19 PRK00517 prmA ribosomal protei 99.7 2.9E-15 6.3E-20 122.5 15.9 151 20-208 85-238 (250)
20 TIGR00138 gidB 16S rRNA methyl 99.7 3.3E-15 7.3E-20 116.3 13.9 129 63-212 41-173 (181)
21 PRK11207 tellurite resistance 99.6 3.9E-15 8.4E-20 117.6 12.9 101 64-181 30-133 (197)
22 PRK11036 putative S-adenosyl-L 99.6 2.8E-15 6E-20 123.0 11.6 108 64-185 44-152 (255)
23 PLN02244 tocopherol O-methyltr 99.6 8.9E-15 1.9E-19 124.7 15.1 105 63-182 117-223 (340)
24 PF08241 Methyltransf_11: Meth 99.6 2.6E-15 5.7E-20 103.8 8.8 93 69-180 1-95 (95)
25 COG2226 UbiE Methylase involve 99.6 1E-14 2.3E-19 117.1 13.1 106 64-185 51-159 (238)
26 PF01209 Ubie_methyltran: ubiE 99.6 1.6E-14 3.5E-19 116.7 14.1 109 63-187 46-158 (233)
27 TIGR00477 tehB tellurite resis 99.6 1.2E-14 2.5E-19 114.7 12.6 100 64-181 30-132 (195)
28 PRK14968 putative methyltransf 99.6 4.1E-14 8.9E-19 110.4 15.3 142 39-208 9-173 (188)
29 PRK00107 gidB 16S rRNA methylt 99.6 4.1E-14 8.9E-19 110.6 15.0 122 64-209 45-170 (187)
30 PRK09489 rsmC 16S ribosomal RN 99.6 4E-14 8.7E-19 120.4 16.0 132 22-184 166-305 (342)
31 PF02353 CMAS: Mycolic acid cy 99.6 4.5E-14 9.8E-19 116.5 13.7 106 61-184 59-168 (273)
32 TIGR00452 methyltransferase, p 99.6 3.6E-14 7.9E-19 119.0 13.3 106 61-182 118-225 (314)
33 PLN02233 ubiquinone biosynthes 99.6 8.2E-14 1.8E-18 114.6 14.8 110 63-185 72-185 (261)
34 PRK15068 tRNA mo(5)U34 methylt 99.6 5.6E-14 1.2E-18 118.8 14.1 105 62-182 120-226 (322)
35 PRK08287 cobalt-precorrin-6Y C 99.6 1.8E-13 3.9E-18 107.1 15.6 117 63-202 30-150 (187)
36 COG2230 Cfa Cyclopropane fatty 99.6 6.7E-14 1.5E-18 114.5 13.2 107 61-185 69-179 (283)
37 PRK12335 tellurite resistance 99.6 4.2E-14 9.1E-19 117.9 12.2 101 64-182 120-223 (287)
38 TIGR03704 PrmC_rel_meth putati 99.6 2E-13 4.4E-18 111.6 15.8 145 41-211 69-243 (251)
39 PTZ00098 phosphoethanolamine N 99.6 6.8E-14 1.5E-18 115.2 12.9 105 62-184 50-158 (263)
40 PF13659 Methyltransf_26: Meth 99.6 1.3E-14 2.8E-19 104.7 7.6 106 65-183 1-116 (117)
41 PRK10258 biotin biosynthesis p 99.6 6.3E-14 1.4E-18 114.6 12.3 100 64-184 42-142 (251)
42 COG2890 HemK Methylase of poly 99.6 2.1E-13 4.6E-18 113.0 15.5 103 67-187 113-243 (280)
43 PF03848 TehB: Tellurite resis 99.5 1.2E-13 2.7E-18 107.6 12.2 104 62-183 28-134 (192)
44 COG2263 Predicted RNA methylas 99.5 2.5E-13 5.4E-18 104.0 13.5 120 61-207 42-167 (198)
45 PRK14966 unknown domain/N5-glu 99.5 9.2E-13 2E-17 113.5 18.6 135 41-203 237-400 (423)
46 PF13489 Methyltransf_23: Meth 99.5 8.8E-14 1.9E-18 105.5 11.1 99 62-186 20-119 (161)
47 PLN02336 phosphoethanolamine N 99.5 2E-13 4.3E-18 121.4 14.8 106 63-185 265-372 (475)
48 TIGR02752 MenG_heptapren 2-hep 99.5 1.7E-13 3.8E-18 110.5 13.0 105 63-183 44-152 (231)
49 PRK11873 arsM arsenite S-adeno 99.5 3.2E-13 6.9E-18 111.7 14.1 106 62-183 75-184 (272)
50 PRK01683 trans-aconitate 2-met 99.5 2.2E-13 4.7E-18 111.8 12.9 98 63-182 30-130 (258)
51 PRK15128 23S rRNA m(5)C1962 me 99.5 1.5E-12 3.3E-17 112.7 18.4 147 64-222 220-387 (396)
52 smart00828 PKS_MT Methyltransf 99.5 3.8E-13 8.2E-18 108.1 13.7 125 66-206 1-142 (224)
53 PF08242 Methyltransf_12: Meth 99.5 6E-15 1.3E-19 103.5 2.7 95 69-178 1-99 (99)
54 TIGR03533 L3_gln_methyl protei 99.5 1E-12 2.2E-17 109.3 16.2 104 64-183 121-252 (284)
55 PRK10909 rsmD 16S rRNA m(2)G96 99.5 3.1E-13 6.6E-18 106.6 12.1 107 63-185 52-162 (199)
56 TIGR03534 RF_mod_PrmC protein- 99.5 9.5E-13 2.1E-17 107.3 15.3 139 38-203 69-236 (251)
57 PRK11783 rlmL 23S rRNA m(2)G24 99.5 2.8E-13 6E-18 125.3 13.1 138 64-217 538-689 (702)
58 PRK14103 trans-aconitate 2-met 99.5 4.2E-13 9.2E-18 110.0 12.7 96 63-182 28-126 (255)
59 TIGR00080 pimt protein-L-isoas 99.5 4.5E-13 9.7E-18 107.2 12.4 100 62-183 75-178 (215)
60 PRK13168 rumA 23S rRNA m(5)U19 99.5 1.4E-12 3.1E-17 114.9 16.6 145 42-212 282-428 (443)
61 PF08003 Methyltransf_9: Prote 99.5 5E-13 1.1E-17 109.7 12.6 107 61-182 112-219 (315)
62 TIGR00536 hemK_fam HemK family 99.5 8.9E-13 1.9E-17 109.8 14.4 106 66-187 116-249 (284)
63 TIGR02469 CbiT precorrin-6Y C5 99.5 2.1E-12 4.5E-17 93.8 14.3 102 63-182 18-122 (124)
64 PRK05134 bifunctional 3-demeth 99.5 7.5E-13 1.6E-17 107.0 13.0 118 44-184 35-153 (233)
65 TIGR00095 RNA methyltransferas 99.5 6.3E-13 1.4E-17 104.2 12.0 111 62-184 47-161 (189)
66 PRK00121 trmB tRNA (guanine-N( 99.5 3.6E-13 7.8E-18 106.8 10.5 125 64-204 40-177 (202)
67 PRK15451 tRNA cmo(5)U34 methyl 99.5 8.2E-13 1.8E-17 107.9 12.7 105 64-185 56-167 (247)
68 PLN02490 MPBQ/MSBQ methyltrans 99.5 1.6E-12 3.4E-17 110.1 14.0 101 64-183 113-216 (340)
69 PRK00377 cbiT cobalt-precorrin 99.5 3.5E-12 7.7E-17 100.7 15.1 124 61-203 37-165 (198)
70 PRK01544 bifunctional N5-gluta 99.5 3.7E-12 8.1E-17 113.7 17.0 106 64-185 138-272 (506)
71 PRK09328 N5-glutamine S-adenos 99.5 4.6E-12 9.9E-17 104.8 16.0 136 40-202 91-256 (275)
72 PRK13944 protein-L-isoaspartat 99.5 2.9E-12 6.2E-17 101.8 14.2 101 62-183 70-174 (205)
73 PRK11805 N5-glutamine S-adenos 99.4 2.4E-12 5.3E-17 108.1 14.3 103 66-184 135-265 (307)
74 KOG1499 Protein arginine N-met 99.4 4.4E-13 9.6E-18 111.5 8.8 105 60-179 56-164 (346)
75 COG1092 Predicted SAM-dependen 99.4 3.1E-12 6.7E-17 109.7 14.2 178 14-215 178-373 (393)
76 TIGR00740 methyltransferase, p 99.4 1.6E-12 3.4E-17 105.6 11.9 106 64-186 53-165 (239)
77 PRK13942 protein-L-isoaspartat 99.4 3E-12 6.5E-17 102.2 13.0 113 41-182 60-176 (212)
78 PRK04266 fibrillarin; Provisio 99.4 2.8E-11 6.1E-16 97.3 18.5 129 62-207 70-209 (226)
79 PRK08317 hypothetical protein; 99.4 5.1E-12 1.1E-16 101.9 14.3 105 61-182 16-124 (241)
80 TIGR02072 BioC biotin biosynth 99.4 2.5E-12 5.4E-17 103.8 12.2 101 63-183 33-136 (240)
81 TIGR03840 TMPT_Se_Te thiopurin 99.4 7.1E-12 1.5E-16 100.0 14.5 159 41-212 19-191 (213)
82 PF13649 Methyltransf_25: Meth 99.4 5.4E-13 1.2E-17 94.0 7.2 92 68-176 1-101 (101)
83 PF05401 NodS: Nodulation prot 99.4 8.3E-13 1.8E-17 102.2 8.7 99 66-183 45-147 (201)
84 TIGR02085 meth_trns_rumB 23S r 99.4 9.4E-12 2E-16 107.4 15.5 127 64-212 233-360 (374)
85 TIGR00091 tRNA (guanine-N(7)-) 99.4 2.9E-12 6.4E-17 100.9 11.4 121 64-199 16-147 (194)
86 TIGR01983 UbiG ubiquinone bios 99.4 3.9E-12 8.4E-17 102.1 12.4 125 41-183 25-150 (224)
87 PRK05785 hypothetical protein; 99.4 2.1E-12 4.6E-17 104.0 10.7 87 65-175 52-140 (226)
88 PRK00216 ubiE ubiquinone/menaq 99.4 8.7E-12 1.9E-16 100.7 14.4 105 64-183 51-159 (239)
89 PRK03522 rumB 23S rRNA methylu 99.4 1.1E-11 2.4E-16 104.6 15.3 126 64-211 173-299 (315)
90 PRK11705 cyclopropane fatty ac 99.4 4.9E-12 1.1E-16 109.3 13.3 99 62-182 165-267 (383)
91 TIGR02716 C20_methyl_CrtF C-20 99.4 9.5E-12 2.1E-16 104.7 14.4 104 63-183 148-255 (306)
92 TIGR00479 rumA 23S rRNA (uraci 99.4 1.4E-11 3E-16 108.4 15.8 129 64-211 292-423 (431)
93 TIGR01177 conserved hypothetic 99.4 9E-12 2E-16 105.8 14.0 120 43-185 168-297 (329)
94 PRK00312 pcm protein-L-isoaspa 99.4 1.4E-11 3.1E-16 98.2 14.3 114 41-183 62-176 (212)
95 TIGR02021 BchM-ChlM magnesium 99.4 4.6E-12 9.9E-17 101.6 11.0 101 62-180 53-156 (219)
96 PLN02672 methionine S-methyltr 99.4 1.4E-11 3E-16 117.0 15.6 160 41-210 101-305 (1082)
97 COG2242 CobL Precorrin-6B meth 99.3 8.8E-11 1.9E-15 90.2 15.8 124 61-206 31-159 (187)
98 KOG1540 Ubiquinone biosynthesi 99.3 3.9E-11 8.4E-16 95.8 14.0 121 62-195 98-228 (296)
99 PF10672 Methyltrans_SAM: S-ad 99.3 1.6E-11 3.5E-16 101.5 12.4 122 64-197 123-252 (286)
100 PRK07402 precorrin-6B methylas 99.3 9.3E-11 2E-15 92.4 16.2 129 63-210 39-172 (196)
101 COG2518 Pcm Protein-L-isoaspar 99.3 1.6E-11 3.5E-16 96.2 11.6 101 61-183 69-170 (209)
102 PLN02585 magnesium protoporphy 99.3 2.2E-11 4.7E-16 102.4 12.7 104 63-182 143-249 (315)
103 PRK06922 hypothetical protein; 99.3 1.5E-11 3.3E-16 110.7 11.1 106 63-183 417-538 (677)
104 PRK13255 thiopurine S-methyltr 99.3 8.7E-11 1.9E-15 94.1 14.3 159 41-212 22-194 (218)
105 PRK05031 tRNA (uracil-5-)-meth 99.3 1.3E-10 2.7E-15 100.0 16.1 143 41-212 191-347 (362)
106 TIGR01934 MenG_MenH_UbiE ubiqu 99.3 6.9E-11 1.5E-15 94.4 13.6 103 64-184 39-145 (223)
107 TIGR02143 trmA_only tRNA (urac 99.3 1E-10 2.2E-15 100.3 15.2 161 20-211 163-337 (353)
108 TIGR03587 Pse_Me-ase pseudamin 99.3 3.3E-11 7.1E-16 95.6 11.3 95 64-182 43-142 (204)
109 PLN02336 phosphoethanolamine N 99.3 2.7E-11 5.9E-16 107.8 12.0 104 63-182 36-142 (475)
110 PRK07580 Mg-protoporphyrin IX 99.3 4.2E-11 9.2E-16 96.4 12.1 96 63-176 62-160 (230)
111 PRK11188 rrmJ 23S rRNA methylt 99.3 1.3E-10 2.9E-15 92.5 14.4 119 63-206 50-187 (209)
112 KOG4300 Predicted methyltransf 99.3 2.9E-11 6.2E-16 93.7 9.4 106 67-187 79-187 (252)
113 KOG2904 Predicted methyltransf 99.3 1.6E-10 3.5E-15 93.1 14.0 136 42-195 130-300 (328)
114 PF03602 Cons_hypoth95: Conser 99.3 9.6E-12 2.1E-16 96.9 6.9 110 63-185 41-156 (183)
115 KOG1500 Protein arginine N-met 99.3 2.1E-11 4.5E-16 100.8 9.0 104 60-180 173-280 (517)
116 cd02440 AdoMet_MTases S-adenos 99.3 5.4E-11 1.2E-15 82.4 9.9 100 67-181 1-103 (107)
117 PRK14902 16S rRNA methyltransf 99.3 2.7E-10 5.9E-15 100.6 15.8 105 63-182 249-379 (444)
118 PHA03412 putative methyltransf 99.3 6.6E-11 1.4E-15 94.7 10.7 92 64-177 49-158 (241)
119 PHA03411 putative methyltransf 99.2 5.8E-11 1.2E-15 97.1 10.5 98 65-184 65-185 (279)
120 PTZ00146 fibrillarin; Provisio 99.2 6E-10 1.3E-14 92.1 16.5 133 33-186 104-241 (293)
121 COG4976 Predicted methyltransf 99.2 8.2E-12 1.8E-16 98.2 5.3 130 66-214 127-271 (287)
122 PRK13943 protein-L-isoaspartat 99.2 1.6E-10 3.5E-15 97.4 13.2 99 62-182 78-180 (322)
123 PRK10901 16S rRNA methyltransf 99.2 2.9E-10 6.3E-15 99.9 15.2 105 63-182 243-372 (427)
124 PRK06202 hypothetical protein; 99.2 7.3E-11 1.6E-15 95.4 10.5 102 64-186 60-170 (232)
125 PLN02781 Probable caffeoyl-CoA 99.2 1.1E-10 2.4E-15 94.5 11.2 103 64-181 68-177 (234)
126 PLN03075 nicotianamine synthas 99.2 1.8E-10 3.9E-15 95.4 12.5 104 64-182 123-233 (296)
127 smart00138 MeTrc Methyltransfe 99.2 4.8E-11 1E-15 98.3 9.1 118 64-184 99-244 (264)
128 PRK14901 16S rRNA methyltransf 99.2 6.6E-10 1.4E-14 97.8 16.6 107 63-182 251-384 (434)
129 PRK11088 rrmA 23S rRNA methylt 99.2 1.5E-10 3.3E-15 95.8 10.9 93 64-184 85-183 (272)
130 smart00650 rADc Ribosomal RNA 99.2 3E-10 6.5E-15 87.5 11.7 99 63-182 12-113 (169)
131 KOG3191 Predicted N6-DNA-methy 99.2 7.4E-10 1.6E-14 84.3 13.4 128 65-212 44-197 (209)
132 PF01135 PCMT: Protein-L-isoas 99.2 1.6E-10 3.5E-15 91.8 10.2 101 61-183 69-173 (209)
133 KOG3420 Predicted RNA methylas 99.2 2.8E-11 6E-16 88.7 5.0 107 20-157 18-126 (185)
134 PRK14121 tRNA (guanine-N(7)-)- 99.2 2.1E-10 4.5E-15 98.4 11.2 107 64-184 122-237 (390)
135 TIGR00446 nop2p NOL1/NOP2/sun 99.2 5.4E-10 1.2E-14 92.1 13.2 105 63-183 70-200 (264)
136 COG2265 TrmA SAM-dependent met 99.2 3.2E-10 7E-15 99.0 12.3 143 42-210 278-422 (432)
137 KOG2920 Predicted methyltransf 99.2 9.8E-12 2.1E-16 101.0 2.2 148 29-187 85-239 (282)
138 TIGR03438 probable methyltrans 99.2 3E-10 6.4E-15 95.4 11.2 110 64-185 63-180 (301)
139 KOG1271 Methyltransferases [Ge 99.2 2.8E-10 6.1E-15 86.6 9.6 146 41-208 47-206 (227)
140 PRK14903 16S rRNA methyltransf 99.2 6.5E-10 1.4E-14 97.6 13.2 106 63-183 236-367 (431)
141 PRK11727 23S rRNA mA1618 methy 99.2 1.6E-10 3.4E-15 97.2 8.9 84 64-159 114-203 (321)
142 PRK04457 spermidine synthase; 99.1 4.2E-10 9.1E-15 92.6 10.9 122 64-202 66-196 (262)
143 TIGR00438 rrmJ cell division p 99.1 2.6E-09 5.7E-14 83.6 14.9 118 61-203 29-165 (188)
144 COG0742 N6-adenine-specific me 99.1 4.1E-10 8.9E-15 86.9 10.0 111 62-185 41-157 (187)
145 KOG1541 Predicted protein carb 99.1 6.7E-10 1.4E-14 87.0 11.0 118 64-201 50-180 (270)
146 COG4106 Tam Trans-aconitate me 99.1 1.8E-10 3.9E-15 90.0 7.7 98 64-183 30-130 (257)
147 PRK14904 16S rRNA methyltransf 99.1 1.5E-09 3.3E-14 95.9 14.3 132 37-195 233-394 (445)
148 TIGR00563 rsmB ribosomal RNA s 99.1 2.1E-09 4.6E-14 94.4 14.1 133 40-196 225-386 (426)
149 PF05958 tRNA_U5-meth_tr: tRNA 99.1 2.9E-09 6.3E-14 91.2 13.9 163 18-211 160-336 (352)
150 PRK13256 thiopurine S-methyltr 99.1 7.8E-09 1.7E-13 82.9 15.0 158 41-209 28-198 (226)
151 PLN02476 O-methyltransferase 99.1 5.4E-09 1.2E-13 86.2 13.6 129 64-207 118-267 (278)
152 PF07021 MetW: Methionine bios 99.0 9E-10 2E-14 85.2 8.2 96 64-183 13-110 (193)
153 PF01596 Methyltransf_3: O-met 99.0 1.6E-09 3.5E-14 85.8 9.4 129 64-207 45-194 (205)
154 PRK04338 N(2),N(2)-dimethylgua 99.0 1.4E-09 3.1E-14 93.9 9.7 98 65-182 58-158 (382)
155 PRK00811 spermidine synthase; 99.0 6.3E-09 1.4E-13 86.6 12.1 128 64-201 76-212 (283)
156 PF05185 PRMT5: PRMT5 arginine 99.0 6.1E-09 1.3E-13 91.6 11.5 100 64-179 186-294 (448)
157 PF02475 Met_10: Met-10+ like- 99.0 2.3E-09 4.9E-14 84.5 7.9 98 62-179 99-199 (200)
158 COG4122 Predicted O-methyltran 99.0 7.5E-09 1.6E-13 82.3 10.9 128 64-207 59-207 (219)
159 COG2519 GCD14 tRNA(1-methylade 99.0 2E-08 4.4E-13 80.7 13.3 103 61-184 91-197 (256)
160 PRK04148 hypothetical protein; 99.0 6.1E-09 1.3E-13 76.5 9.1 97 44-171 3-101 (134)
161 PRK14896 ksgA 16S ribosomal RN 98.9 7.8E-09 1.7E-13 85.0 9.7 77 61-157 26-103 (258)
162 TIGR00478 tly hemolysin TlyA f 98.9 3.8E-09 8.3E-14 84.9 7.6 112 37-180 55-169 (228)
163 TIGR02081 metW methionine bios 98.9 8.7E-09 1.9E-13 81.1 9.5 89 64-173 13-103 (194)
164 PRK00274 ksgA 16S ribosomal RN 98.9 6.9E-09 1.5E-13 85.9 9.2 77 62-157 40-117 (272)
165 PF00891 Methyltransf_2: O-met 98.9 1.9E-08 4E-13 81.8 11.6 96 64-184 100-201 (241)
166 TIGR00417 speE spermidine synt 98.9 2.6E-08 5.7E-13 82.4 12.2 106 65-181 73-185 (270)
167 PTZ00338 dimethyladenosine tra 98.9 1.9E-08 4E-13 84.1 11.4 81 61-158 33-114 (294)
168 KOG2899 Predicted methyltransf 98.9 1.2E-08 2.7E-13 81.0 9.5 123 60-182 54-209 (288)
169 TIGR00308 TRM1 tRNA(guanine-26 98.9 2E-08 4.3E-13 86.5 11.2 99 65-182 45-147 (374)
170 PRK03612 spermidine synthase; 98.9 2.4E-08 5.3E-13 89.8 12.3 132 64-203 297-439 (521)
171 PF08704 GCD14: tRNA methyltra 98.8 9.6E-08 2.1E-12 77.6 13.3 123 61-202 37-165 (247)
172 PF05724 TPMT: Thiopurine S-me 98.8 5.5E-08 1.2E-12 77.8 11.7 156 41-208 22-190 (218)
173 COG1041 Predicted DNA modifica 98.8 7.7E-08 1.7E-12 80.9 12.7 119 42-183 182-311 (347)
174 PF05219 DREV: DREV methyltran 98.8 6E-08 1.3E-12 78.4 11.4 95 63-182 93-188 (265)
175 KOG2361 Predicted methyltransf 98.8 1.8E-08 3.8E-13 80.1 7.9 113 67-193 74-194 (264)
176 PLN02589 caffeoyl-CoA O-methyl 98.8 5.2E-08 1.1E-12 79.3 10.4 103 64-181 79-189 (247)
177 KOG3010 Methyltransferase [Gen 98.8 1.2E-08 2.5E-13 81.2 6.3 98 67-180 36-134 (261)
178 PF01170 UPF0020: Putative RNA 98.8 5.2E-08 1.1E-12 75.7 9.6 118 43-183 14-151 (179)
179 PF02527 GidB: rRNA small subu 98.8 6.9E-08 1.5E-12 75.2 10.2 121 67-208 51-175 (184)
180 COG2520 Predicted methyltransf 98.7 9.5E-08 2.1E-12 80.7 10.0 106 63-187 187-294 (341)
181 PRK01581 speE spermidine synth 98.7 9.3E-08 2E-12 81.3 9.4 105 64-181 150-267 (374)
182 PLN02366 spermidine synthase 98.7 3.2E-07 6.9E-12 77.1 12.2 127 64-201 91-227 (308)
183 TIGR00755 ksgA dimethyladenosi 98.7 2.5E-07 5.5E-12 75.8 11.3 75 62-156 27-105 (253)
184 KOG2187 tRNA uracil-5-methyltr 98.7 2E-07 4.3E-12 81.5 10.7 125 41-186 367-494 (534)
185 PRK11783 rlmL 23S rRNA m(2)G24 98.7 1E-06 2.3E-11 82.0 15.6 151 13-183 138-348 (702)
186 COG0357 GidB Predicted S-adeno 98.6 3.3E-07 7.1E-12 72.8 9.7 126 65-211 68-198 (215)
187 PF09445 Methyltransf_15: RNA 98.6 9.1E-08 2E-12 72.7 6.3 77 67-155 2-79 (163)
188 PF02390 Methyltransf_4: Putat 98.6 3.4E-07 7.3E-12 72.1 9.7 119 66-199 19-148 (195)
189 COG2521 Predicted archaeal met 98.6 2.3E-07 5.1E-12 73.5 8.5 130 63-204 133-273 (287)
190 PLN02232 ubiquinone biosynthes 98.6 3.8E-07 8.1E-12 69.6 9.4 84 90-186 1-85 (160)
191 PF03291 Pox_MCEL: mRNA cappin 98.6 3.2E-07 6.9E-12 77.8 9.6 137 38-184 43-188 (331)
192 PF06080 DUF938: Protein of un 98.6 5.7E-07 1.2E-11 70.6 9.6 106 67-184 28-143 (204)
193 COG3963 Phospholipid N-methylt 98.5 5.9E-07 1.3E-11 67.7 8.8 121 37-182 28-156 (194)
194 KOG1661 Protein-L-isoaspartate 98.5 1.1E-06 2.5E-11 68.6 10.1 109 61-181 79-192 (237)
195 COG0116 Predicted N6-adenine-s 98.5 5.4E-06 1.2E-10 70.8 14.1 149 13-183 140-345 (381)
196 PF05971 Methyltransf_10: Prot 98.5 1.5E-06 3.3E-11 72.2 10.3 83 65-159 103-191 (299)
197 COG0220 Predicted S-adenosylme 98.4 1.6E-06 3.5E-11 69.6 9.6 107 66-185 50-167 (227)
198 PF01861 DUF43: Protein of unk 98.4 2.5E-05 5.4E-10 62.7 15.6 151 32-207 20-177 (243)
199 PF02384 N6_Mtase: N-6 DNA Met 98.4 4.3E-06 9.3E-11 70.5 11.8 123 43-184 32-185 (311)
200 PF05148 Methyltransf_8: Hypot 98.4 7.1E-06 1.5E-10 64.4 11.0 126 37-205 53-182 (219)
201 PLN02823 spermine synthase 98.4 5.9E-06 1.3E-10 70.3 11.3 125 64-201 103-243 (336)
202 PF12147 Methyltransf_20: Puta 98.3 1.2E-05 2.6E-10 66.1 12.0 113 64-188 135-255 (311)
203 KOG1975 mRNA cap methyltransfe 98.3 3.5E-06 7.6E-11 69.9 8.5 114 64-184 117-239 (389)
204 PRK10611 chemotaxis methyltran 98.3 4.3E-06 9.3E-11 69.5 8.6 116 66-183 117-263 (287)
205 COG0030 KsgA Dimethyladenosine 98.3 1.4E-05 3E-10 65.2 11.2 80 61-157 27-107 (259)
206 KOG2940 Predicted methyltransf 98.3 8.9E-07 1.9E-11 70.2 4.1 99 65-181 73-173 (325)
207 PRK11933 yebU rRNA (cytosine-C 98.3 1.9E-05 4.2E-10 70.0 12.6 105 63-182 112-242 (470)
208 TIGR02987 met_A_Alw26 type II 98.2 2.1E-05 4.5E-10 71.1 12.8 81 64-157 31-124 (524)
209 PF08123 DOT1: Histone methyla 98.2 3.1E-06 6.8E-11 67.1 6.6 155 62-222 40-200 (205)
210 PF01739 CheR: CheR methyltran 98.2 3E-06 6.4E-11 66.7 6.1 117 64-183 31-176 (196)
211 PRK00536 speE spermidine synth 98.2 2.9E-05 6.4E-10 63.7 11.9 118 65-202 73-193 (262)
212 PF04816 DUF633: Family of unk 98.2 4.3E-05 9.3E-10 60.6 12.1 116 68-203 1-119 (205)
213 COG1352 CheR Methylase of chem 98.2 3.5E-06 7.6E-11 69.3 6.0 120 65-187 97-246 (268)
214 COG4076 Predicted RNA methylas 98.2 2.6E-06 5.6E-11 65.6 4.7 97 65-179 33-132 (252)
215 PF05891 Methyltransf_PK: AdoM 98.2 3.2E-06 7E-11 66.8 5.2 103 64-182 55-161 (218)
216 KOG0820 Ribosomal RNA adenine 98.1 2.8E-05 6.1E-10 63.2 9.2 99 32-155 34-133 (315)
217 PF03141 Methyltransf_29: Puta 98.1 1E-05 2.2E-10 71.0 6.7 99 67-186 120-223 (506)
218 KOG3045 Predicted RNA methylas 98.0 8.2E-05 1.8E-09 60.2 10.4 109 64-206 180-289 (325)
219 TIGR01444 fkbM_fam methyltrans 98.0 2.2E-05 4.8E-10 58.3 6.9 44 67-110 1-47 (143)
220 PF00398 RrnaAD: Ribosomal RNA 98.0 2.9E-05 6.2E-10 64.0 7.9 105 42-171 15-120 (262)
221 KOG1663 O-methyltransferase [S 98.0 0.00013 2.9E-09 58.0 11.1 106 62-182 71-183 (237)
222 COG1189 Predicted rRNA methyla 98.0 8.3E-05 1.8E-09 59.5 9.7 112 40-181 62-177 (245)
223 COG0144 Sun tRNA and rRNA cyto 98.0 0.0001 2.2E-09 63.4 10.9 109 61-182 153-288 (355)
224 PRK01544 bifunctional N5-gluta 98.0 5.6E-05 1.2E-09 68.0 9.6 107 64-184 347-464 (506)
225 PF01728 FtsJ: FtsJ-like methy 97.8 2E-05 4.3E-10 61.1 4.3 49 41-96 5-58 (181)
226 PF01564 Spermine_synth: Sperm 97.8 0.0002 4.4E-09 58.5 10.3 128 64-202 76-213 (246)
227 KOG3987 Uncharacterized conser 97.8 5.8E-06 1.3E-10 64.6 1.2 94 64-182 112-207 (288)
228 PF07942 N2227: N2227-like pro 97.8 0.00036 7.8E-09 57.4 11.4 142 62-205 54-239 (270)
229 KOG1709 Guanidinoacetate methy 97.8 0.00016 3.5E-09 57.0 8.8 104 63-182 100-206 (271)
230 PRK11760 putative 23S rRNA C24 97.8 0.00055 1.2E-08 58.0 12.5 116 41-182 188-305 (357)
231 COG0500 SmtA SAM-dependent met 97.8 0.00063 1.4E-08 49.6 11.7 103 68-186 52-159 (257)
232 KOG1501 Arginine N-methyltrans 97.8 5.4E-05 1.2E-09 65.3 6.4 45 67-111 69-115 (636)
233 KOG2497 Predicted methyltransf 97.8 2.3E-05 5E-10 64.1 3.6 133 23-172 52-190 (262)
234 PRK00050 16S rRNA m(4)C1402 me 97.8 8.1E-05 1.8E-09 62.2 6.8 45 63-107 18-66 (296)
235 PF11968 DUF3321: Putative met 97.7 0.00058 1.3E-08 54.1 10.6 133 40-205 30-178 (219)
236 PF01234 NNMT_PNMT_TEMT: NNMT/ 97.7 3E-05 6.6E-10 63.3 3.4 148 60-207 52-238 (256)
237 PRK10742 putative methyltransf 97.6 0.00031 6.8E-09 56.9 8.4 83 67-155 91-174 (250)
238 COG0293 FtsJ 23S rRNA methylas 97.6 0.0016 3.5E-08 51.3 12.0 116 62-203 43-178 (205)
239 PF01269 Fibrillarin: Fibrilla 97.6 0.0058 1.2E-07 48.7 15.0 160 33-213 45-218 (229)
240 PHA01634 hypothetical protein 97.5 0.00018 4E-09 52.0 5.1 51 60-110 24-76 (156)
241 COG0421 SpeE Spermidine syntha 97.5 0.00075 1.6E-08 56.1 9.5 104 66-181 78-189 (282)
242 PF03059 NAS: Nicotianamine sy 97.5 0.0015 3.4E-08 53.9 11.1 101 66-181 122-229 (276)
243 KOG2730 Methylase [General fun 97.5 6.9E-05 1.5E-09 59.2 2.7 80 64-155 94-175 (263)
244 COG2384 Predicted SAM-dependen 97.5 0.0048 1E-07 48.9 12.8 114 64-195 16-132 (226)
245 PF13679 Methyltransf_32: Meth 97.5 0.00036 7.8E-09 52.0 6.3 47 63-109 24-77 (141)
246 PF09243 Rsm22: Mitochondrial 97.4 0.0042 9E-08 51.6 12.0 105 61-184 30-141 (274)
247 TIGR03439 methyl_EasF probable 97.4 0.0017 3.8E-08 54.9 9.7 107 64-183 76-198 (319)
248 KOG2915 tRNA(1-methyladenosine 97.4 0.012 2.6E-07 48.2 13.9 105 61-183 102-210 (314)
249 PF01189 Nol1_Nop2_Fmu: NOL1/N 97.3 0.0027 5.8E-08 53.0 10.5 145 38-207 69-247 (283)
250 KOG1269 SAM-dependent methyltr 97.1 0.0019 4.2E-08 55.5 7.7 104 61-180 107-213 (364)
251 PF06962 rRNA_methylase: Putat 97.1 0.0068 1.5E-07 44.9 9.4 104 88-206 1-123 (140)
252 PF13578 Methyltransf_24: Meth 97.0 0.00021 4.5E-09 50.3 0.6 98 69-180 1-103 (106)
253 PF02005 TRM: N2,N2-dimethylgu 96.9 0.004 8.7E-08 54.0 7.5 102 65-183 50-155 (377)
254 COG3129 Predicted SAM-dependen 96.9 0.0028 6E-08 50.7 5.9 83 64-158 78-166 (292)
255 COG1568 Predicted methyltransf 96.6 0.011 2.4E-07 48.5 7.7 121 61-197 149-275 (354)
256 cd00315 Cyt_C5_DNA_methylase C 96.5 0.0058 1.3E-07 50.7 5.9 40 67-106 2-43 (275)
257 COG1889 NOP1 Fibrillarin-like 96.5 0.22 4.7E-06 39.3 13.6 111 61-188 73-186 (231)
258 KOG2798 Putative trehalase [Ca 96.5 0.028 6.1E-07 47.0 9.2 117 64-180 150-294 (369)
259 KOG2671 Putative RNA methylase 96.5 0.0053 1.2E-07 51.8 5.1 109 62-184 206-356 (421)
260 COG4262 Predicted spermidine s 96.4 0.033 7.3E-07 47.6 9.7 109 66-182 291-407 (508)
261 KOG3178 Hydroxyindole-O-methyl 96.4 0.02 4.3E-07 48.5 8.3 94 66-183 179-276 (342)
262 PRK15001 SAM-dependent 23S rib 96.4 0.13 2.7E-06 44.8 13.5 138 19-186 7-146 (378)
263 COG5459 Predicted rRNA methyla 96.3 0.0051 1.1E-07 52.1 4.0 107 61-184 110-227 (484)
264 KOG0024 Sorbitol dehydrogenase 96.2 0.011 2.3E-07 49.7 5.7 98 61-182 166-273 (354)
265 PF01555 N6_N4_Mtase: DNA meth 96.2 0.014 3E-07 46.3 6.2 56 40-103 175-231 (231)
266 PF04672 Methyltransf_19: S-ad 96.2 0.018 3.9E-07 47.3 6.7 108 66-186 70-194 (267)
267 KOG2078 tRNA modification enzy 96.2 0.0037 8.1E-08 54.1 2.7 72 32-111 225-297 (495)
268 PLN02668 indole-3-acetate carb 96.1 0.08 1.7E-06 46.0 10.7 31 65-95 64-111 (386)
269 KOG1122 tRNA and rRNA cytosine 96.1 0.23 5E-06 43.3 13.2 108 61-182 238-371 (460)
270 PF03492 Methyltransf_7: SAM d 96.0 0.069 1.5E-06 45.6 9.8 115 64-187 16-188 (334)
271 PF07757 AdoMet_MTase: Predict 96.0 0.014 3.1E-07 41.0 4.4 29 66-94 60-88 (112)
272 COG1867 TRM1 N2,N2-dimethylgua 95.9 0.044 9.4E-07 46.9 8.0 99 65-183 53-155 (380)
273 KOG3115 Methyltransferase-like 95.9 0.045 9.8E-07 43.1 7.4 113 66-184 62-185 (249)
274 PF03141 Methyltransf_29: Puta 95.9 0.031 6.7E-07 49.6 7.2 119 66-209 367-492 (506)
275 PRK09424 pntA NAD(P) transhydr 95.9 0.13 2.8E-06 46.4 11.1 42 62-103 162-206 (509)
276 PRK11524 putative methyltransf 95.8 0.036 7.9E-07 46.2 7.2 46 62-107 206-252 (284)
277 KOG2352 Predicted spermine/spe 95.8 0.045 9.7E-07 48.4 7.8 99 66-182 50-161 (482)
278 COG1064 AdhP Zn-dependent alco 95.8 0.073 1.6E-06 45.4 8.8 95 61-183 163-260 (339)
279 PF10237 N6-adenineMlase: Prob 95.8 0.078 1.7E-06 40.4 8.1 117 41-188 11-129 (162)
280 PF04445 SAM_MT: Putative SAM- 95.7 0.051 1.1E-06 43.9 7.1 85 66-157 77-162 (234)
281 KOG4589 Cell division protein 95.7 0.28 6E-06 38.3 10.6 33 62-94 67-102 (232)
282 KOG2198 tRNA cytosine-5-methyl 95.6 0.42 9.1E-06 41.0 12.7 135 61-208 152-326 (375)
283 PRK13699 putative methylase; P 95.4 0.075 1.6E-06 42.8 7.3 45 63-107 162-207 (227)
284 COG2961 ComJ Protein involved 95.4 0.29 6.4E-06 39.7 10.3 140 37-199 66-212 (279)
285 PF00145 DNA_methylase: C-5 cy 95.3 0.026 5.6E-07 47.5 4.6 40 67-106 2-43 (335)
286 KOG1227 Putative methyltransfe 95.0 0.017 3.7E-07 47.9 2.5 97 64-179 194-293 (351)
287 KOG1331 Predicted methyltransf 95.0 0.034 7.3E-07 45.9 4.2 112 33-181 27-142 (293)
288 KOG3350 Uncharacterized conser 94.8 0.066 1.4E-06 41.1 4.9 90 127-218 116-206 (217)
289 KOG1596 Fibrillarin and relate 94.7 0.72 1.6E-05 37.5 10.7 60 33-96 128-191 (317)
290 TIGR00006 S-adenosyl-methyltra 94.6 0.2 4.3E-06 42.2 7.8 45 63-107 19-66 (305)
291 COG0270 Dcm Site-specific DNA 94.3 0.11 2.4E-06 44.3 5.8 41 66-106 4-46 (328)
292 COG1063 Tdh Threonine dehydrog 94.1 0.25 5.5E-06 42.4 7.8 98 63-183 167-270 (350)
293 COG0286 HsdM Type I restrictio 94.0 0.82 1.8E-05 41.2 10.9 105 64-183 186-327 (489)
294 PRK09880 L-idonate 5-dehydroge 93.9 1.6 3.4E-05 37.1 12.2 95 63-182 168-266 (343)
295 PF07091 FmrO: Ribosomal RNA m 93.9 0.33 7.2E-06 39.5 7.5 103 65-187 106-213 (251)
296 KOG2912 Predicted DNA methylas 93.8 0.073 1.6E-06 44.7 3.6 77 68-158 106-191 (419)
297 KOG1253 tRNA methyltransferase 93.6 0.068 1.5E-06 47.3 3.3 104 63-182 108-216 (525)
298 PF04989 CmcI: Cephalosporin h 93.5 0.99 2.2E-05 35.8 9.3 105 64-182 32-147 (206)
299 KOG4058 Uncharacterized conser 93.4 0.74 1.6E-05 34.5 8.0 96 66-181 74-171 (199)
300 TIGR00027 mthyl_TIGR00027 meth 93.0 0.93 2E-05 37.3 9.0 108 66-183 83-198 (260)
301 PF06859 Bin3: Bicoid-interact 92.9 0.05 1.1E-06 38.5 1.2 40 145-184 1-46 (110)
302 COG1748 LYS9 Saccharopine dehy 92.7 1.2 2.5E-05 38.9 9.5 75 66-157 2-80 (389)
303 TIGR00675 dcm DNA-methyltransf 92.6 0.17 3.6E-06 42.9 4.2 39 68-106 1-41 (315)
304 TIGR02822 adh_fam_2 zinc-bindi 92.2 2.8 6.2E-05 35.4 11.3 89 62-182 163-254 (329)
305 KOG3924 Putative protein methy 92.2 0.6 1.3E-05 40.4 6.9 113 62-183 190-309 (419)
306 PF02737 3HCDH_N: 3-hydroxyacy 92.2 1 2.2E-05 34.9 7.8 102 68-178 2-110 (180)
307 cd08230 glucose_DH Glucose deh 92.2 1.2 2.6E-05 38.0 9.0 93 63-182 171-269 (355)
308 PRK05786 fabG 3-ketoacyl-(acyl 92.1 3 6.4E-05 33.0 10.8 78 63-156 3-92 (238)
309 KOG1201 Hydroxysteroid 17-beta 92.1 0.73 1.6E-05 38.5 7.2 78 61-153 34-122 (300)
310 PF11599 AviRa: RRNA methyltra 92.0 0.33 7.1E-06 38.7 4.8 119 66-185 53-217 (246)
311 PRK07066 3-hydroxybutyryl-CoA 92.0 1.1 2.3E-05 38.2 8.3 103 66-176 8-113 (321)
312 cd08283 FDH_like_1 Glutathione 91.8 0.84 1.8E-05 39.5 7.8 42 62-103 182-227 (386)
313 PRK11524 putative methyltransf 91.8 0.28 6E-06 40.9 4.5 43 142-184 24-82 (284)
314 PF03269 DUF268: Caenorhabditi 91.6 0.17 3.8E-06 38.3 2.8 100 65-186 2-115 (177)
315 PF03686 UPF0146: Uncharacteri 91.5 0.6 1.3E-05 34.0 5.4 91 44-171 3-94 (127)
316 cd00401 AdoHcyase S-adenosyl-L 91.5 2.4 5.3E-05 37.3 10.1 89 61-183 198-290 (413)
317 TIGR01202 bchC 2-desacetyl-2-h 91.1 1.5 3.2E-05 36.7 8.3 84 64-182 144-231 (308)
318 PF08468 MTS_N: Methyltransfer 90.7 0.81 1.7E-05 34.6 5.7 100 61-188 9-111 (155)
319 PRK12548 shikimate 5-dehydroge 90.3 2.4 5.2E-05 35.4 8.7 80 62-156 123-210 (289)
320 PRK05708 2-dehydropantoate 2-r 90.2 1.8 3.9E-05 36.4 8.0 100 66-183 3-105 (305)
321 TIGR00561 pntA NAD(P) transhyd 90.1 2.3 5E-05 38.5 8.9 41 63-103 162-205 (511)
322 KOG2651 rRNA adenine N-6-methy 90.1 1.2 2.5E-05 38.6 6.6 35 62-96 150-186 (476)
323 PRK06124 gluconate 5-dehydroge 89.8 9.1 0.0002 30.7 11.7 81 61-155 7-98 (256)
324 PRK06701 short chain dehydroge 89.0 5 0.00011 33.2 9.8 79 62-154 43-133 (290)
325 cd08254 hydroxyacyl_CoA_DH 6-h 88.9 2.7 5.9E-05 35.1 8.2 97 62-181 163-262 (338)
326 PRK10458 DNA cytosine methylas 88.9 1.6 3.4E-05 39.1 6.9 41 65-105 88-130 (467)
327 KOG1099 SAM-dependent methyltr 88.9 0.95 2.1E-05 36.5 4.9 102 62-187 38-167 (294)
328 COG4798 Predicted methyltransf 88.8 1.9 4.1E-05 34.0 6.4 111 62-184 46-168 (238)
329 TIGR00518 alaDH alanine dehydr 88.7 1.6 3.4E-05 37.9 6.6 38 63-100 165-205 (370)
330 PF02086 MethyltransfD12: D12 88.3 0.91 2E-05 36.8 4.8 45 44-95 7-51 (260)
331 PRK06139 short chain dehydroge 88.3 2.3 4.9E-05 36.2 7.3 78 63-154 5-93 (330)
332 COG1255 Uncharacterized protei 88.3 1.1 2.4E-05 32.0 4.4 31 66-96 15-46 (129)
333 TIGR03451 mycoS_dep_FDH mycoth 88.1 1.7 3.6E-05 37.2 6.5 41 62-102 174-218 (358)
334 PLN03154 putative allyl alcoho 87.9 3.6 7.8E-05 35.1 8.4 41 62-102 156-200 (348)
335 COG1893 ApbA Ketopantoate redu 87.8 6.8 0.00015 33.1 9.8 99 67-183 2-102 (307)
336 PRK08339 short chain dehydroge 87.8 2.7 5.9E-05 34.2 7.3 79 62-153 5-93 (263)
337 PRK07326 short chain dehydroge 87.7 6.6 0.00014 31.0 9.4 75 64-154 5-91 (237)
338 COG1565 Uncharacterized conser 87.6 2.4 5.2E-05 36.5 6.9 40 66-105 79-128 (370)
339 PRK05867 short chain dehydroge 87.4 3.3 7.1E-05 33.3 7.5 80 62-155 6-96 (253)
340 PRK08265 short chain dehydroge 87.3 8.1 0.00018 31.2 9.9 76 63-155 4-90 (261)
341 PRK07109 short chain dehydroge 87.2 11 0.00024 32.0 10.9 80 62-155 5-95 (334)
342 PRK07806 short chain dehydroge 87.2 11 0.00024 29.9 10.5 103 63-180 4-132 (248)
343 PRK13699 putative methylase; P 86.5 3.2 6.9E-05 33.4 6.9 59 142-203 17-91 (227)
344 PRK05854 short chain dehydroge 86.4 5.5 0.00012 33.4 8.6 82 61-154 10-102 (313)
345 PRK08293 3-hydroxybutyryl-CoA 86.4 8.9 0.00019 31.8 9.7 41 66-106 4-47 (287)
346 PF02558 ApbA: Ketopantoate re 86.4 7 0.00015 28.7 8.3 100 68-183 1-102 (151)
347 PRK06935 2-deoxy-D-gluconate 3 86.3 3.1 6.7E-05 33.6 6.8 79 62-154 12-100 (258)
348 KOG0725 Reductases with broad 86.1 17 0.00037 30.0 11.1 85 60-155 3-99 (270)
349 PF00107 ADH_zinc_N: Zinc-bind 86.1 0.3 6.4E-06 35.1 0.6 83 74-183 1-90 (130)
350 PF04378 RsmJ: Ribosomal RNA s 86.1 2.2 4.8E-05 34.8 5.7 115 69-198 62-180 (245)
351 PRK12826 3-ketoacyl-(acyl-carr 85.9 3.3 7.1E-05 32.9 6.7 79 63-156 4-94 (251)
352 PRK08862 short chain dehydroge 85.8 4.4 9.6E-05 32.3 7.4 77 63-153 3-91 (227)
353 PRK08324 short chain dehydroge 85.8 7.2 0.00016 36.7 9.7 79 62-155 419-508 (681)
354 PF02636 Methyltransf_28: Puta 85.7 3 6.5E-05 34.0 6.4 40 66-105 20-70 (252)
355 PRK05866 short chain dehydroge 85.6 3.4 7.3E-05 34.4 6.8 79 62-154 37-126 (293)
356 PLN02586 probable cinnamyl alc 85.5 8.2 0.00018 33.1 9.4 32 63-94 182-215 (360)
357 PRK08213 gluconate 5-dehydroge 85.4 5.8 0.00013 31.9 8.0 79 62-155 9-99 (259)
358 PRK07097 gluconate 5-dehydroge 85.4 4.3 9.4E-05 32.9 7.3 81 61-155 6-97 (265)
359 PRK05876 short chain dehydroge 85.3 4.7 0.0001 33.1 7.5 78 63-154 4-92 (275)
360 PRK06249 2-dehydropantoate 2-r 85.3 11 0.00025 31.6 10.0 99 66-182 6-106 (313)
361 PF05206 TRM13: Methyltransfer 85.2 2.2 4.9E-05 35.1 5.4 31 64-94 18-55 (259)
362 PRK06125 short chain dehydroge 85.2 6.4 0.00014 31.7 8.2 80 63-155 5-91 (259)
363 PRK07063 short chain dehydroge 85.1 3.7 8E-05 33.1 6.7 80 63-154 5-95 (260)
364 COG0686 Ald Alanine dehydrogen 85.0 4.6 0.0001 34.2 7.1 96 64-179 167-265 (371)
365 PRK06949 short chain dehydroge 85.0 4.7 0.0001 32.3 7.3 80 61-155 5-96 (258)
366 cd05188 MDR Medium chain reduc 85.0 7.9 0.00017 30.9 8.6 94 63-183 133-233 (271)
367 PRK06172 short chain dehydroge 85.0 2.8 6.1E-05 33.6 5.9 79 63-155 5-94 (253)
368 PRK07035 short chain dehydroge 84.8 6 0.00013 31.6 7.8 79 62-154 5-94 (252)
369 PRK07814 short chain dehydroge 84.6 16 0.00034 29.6 10.3 77 62-153 7-95 (263)
370 PRK08703 short chain dehydroge 84.6 7.6 0.00017 30.8 8.3 43 62-105 3-50 (239)
371 cd01078 NAD_bind_H4MPT_DH NADP 84.5 8.9 0.00019 29.7 8.4 34 61-94 24-60 (194)
372 PRK06194 hypothetical protein; 84.5 3.5 7.5E-05 33.8 6.4 79 63-155 4-93 (287)
373 PRK08589 short chain dehydroge 84.4 7.1 0.00015 31.8 8.2 79 63-155 4-92 (272)
374 PF01555 N6_N4_Mtase: DNA meth 84.3 2.9 6.3E-05 32.8 5.7 28 161-188 35-62 (231)
375 PF10354 DUF2431: Domain of un 84.2 16 0.00036 27.8 10.0 46 142-187 72-130 (166)
376 PRK08267 short chain dehydroge 84.0 12 0.00027 30.0 9.4 74 66-155 2-87 (260)
377 PRK07478 short chain dehydroge 83.8 4.6 0.0001 32.4 6.7 78 63-154 4-92 (254)
378 cd08281 liver_ADH_like1 Zinc-d 83.7 3.5 7.6E-05 35.4 6.3 41 62-102 189-233 (371)
379 PRK07062 short chain dehydroge 83.7 8.4 0.00018 31.1 8.3 81 62-154 5-96 (265)
380 PRK09291 short chain dehydroge 83.6 5.9 0.00013 31.7 7.3 75 65-154 2-82 (257)
381 PRK06181 short chain dehydroge 83.6 11 0.00024 30.2 9.0 75 66-155 2-88 (263)
382 PF04072 LCM: Leucine carboxyl 83.5 3 6.4E-05 32.2 5.3 44 66-109 80-125 (183)
383 PRK07890 short chain dehydroge 83.5 6.3 0.00014 31.5 7.4 79 63-155 3-92 (258)
384 PRK08085 gluconate 5-dehydroge 83.4 7.5 0.00016 31.1 7.9 80 62-155 6-96 (254)
385 COG3315 O-Methyltransferase in 83.4 4.6 0.0001 33.9 6.7 108 66-183 94-210 (297)
386 PRK05565 fabG 3-ketoacyl-(acyl 83.3 16 0.00034 28.9 9.6 78 63-155 3-93 (247)
387 PRK07792 fabG 3-ketoacyl-(acyl 83.3 5.7 0.00012 33.2 7.3 81 61-155 8-99 (306)
388 PRK12823 benD 1,6-dihydroxycyc 83.1 5.7 0.00012 31.9 7.0 78 62-153 5-92 (260)
389 PRK09242 tropinone reductase; 82.8 8.4 0.00018 30.9 7.9 81 62-154 6-97 (257)
390 PRK06128 oxidoreductase; Provi 82.6 19 0.00041 29.8 10.1 79 62-154 52-143 (300)
391 TIGR01963 PHB_DH 3-hydroxybuty 82.4 7.3 0.00016 31.0 7.4 75 66-155 2-88 (255)
392 PLN02178 cinnamyl-alcohol dehy 82.2 13 0.00029 32.1 9.3 31 64-94 178-210 (375)
393 PRK07523 gluconate 5-dehydroge 82.2 9.2 0.0002 30.6 7.9 79 62-155 7-97 (255)
394 PRK12481 2-deoxy-D-gluconate 3 82.1 8.4 0.00018 31.0 7.7 79 62-155 5-93 (251)
395 PLN02253 xanthoxin dehydrogena 81.7 5.2 0.00011 32.7 6.3 77 61-153 14-102 (280)
396 PRK06113 7-alpha-hydroxysteroi 81.4 11 0.00024 30.2 8.1 81 61-155 7-98 (255)
397 PRK07791 short chain dehydroge 81.4 9.2 0.0002 31.5 7.8 79 63-155 4-102 (286)
398 TIGR02825 B4_12hDH leukotriene 81.3 12 0.00026 31.3 8.5 40 62-101 136-179 (325)
399 PRK01747 mnmC bifunctional tRN 81.0 15 0.00032 34.5 9.7 72 131-208 151-227 (662)
400 PRK07102 short chain dehydroge 81.0 9.1 0.0002 30.4 7.5 74 66-153 2-84 (243)
401 PRK08277 D-mannonate oxidoredu 81.0 6.3 0.00014 32.1 6.6 78 62-153 7-95 (278)
402 TIGR03206 benzo_BadH 2-hydroxy 80.8 7 0.00015 31.1 6.7 76 64-154 2-89 (250)
403 PF07279 DUF1442: Protein of u 80.7 27 0.00059 27.9 11.2 101 66-186 43-152 (218)
404 COG0863 DNA modification methy 80.5 8.6 0.00019 31.8 7.3 49 61-109 219-268 (302)
405 PRK06720 hypothetical protein; 80.3 13 0.00028 28.3 7.7 80 63-156 14-104 (169)
406 PRK05872 short chain dehydroge 80.2 8 0.00017 32.1 7.1 80 61-155 5-95 (296)
407 PRK08303 short chain dehydroge 80.1 10 0.00022 31.8 7.7 33 62-94 5-40 (305)
408 PRK07666 fabG 3-ketoacyl-(acyl 80.0 7.7 0.00017 30.7 6.7 76 63-153 5-92 (239)
409 cd00755 YgdL_like Family of ac 79.9 3.5 7.5E-05 33.4 4.6 33 63-95 9-44 (231)
410 cd08294 leukotriene_B4_DH_like 79.9 9.6 0.00021 31.7 7.5 96 62-181 141-240 (329)
411 PRK06138 short chain dehydroge 79.8 6.7 0.00015 31.2 6.3 78 63-155 3-91 (252)
412 PRK09260 3-hydroxybutyryl-CoA 79.6 22 0.00047 29.5 9.4 40 66-105 2-44 (288)
413 COG3392 Adenine-specific DNA m 79.5 2.7 5.8E-05 34.6 3.7 36 60-95 23-58 (330)
414 TIGR01832 kduD 2-deoxy-D-gluco 79.5 12 0.00027 29.6 7.8 78 63-155 3-90 (248)
415 PF06460 NSP13: Coronavirus NS 79.4 12 0.00026 30.9 7.4 117 43-197 46-182 (299)
416 COG4627 Uncharacterized protei 79.2 0.42 9.1E-06 36.1 -0.9 43 141-183 43-87 (185)
417 PRK12937 short chain dehydroge 79.0 30 0.00064 27.3 10.3 78 63-154 3-92 (245)
418 COG0604 Qor NADPH:quinone redu 78.8 10 0.00023 32.2 7.4 98 62-182 140-241 (326)
419 PRK07231 fabG 3-ketoacyl-(acyl 78.6 10 0.00023 30.0 7.1 78 63-155 3-91 (251)
420 KOG0822 Protein kinase inhibit 78.6 6.3 0.00014 35.7 6.0 97 66-179 369-475 (649)
421 PRK07774 short chain dehydroge 78.6 9.7 0.00021 30.3 6.9 78 63-155 4-93 (250)
422 PRK07904 short chain dehydroge 78.3 10 0.00022 30.7 6.9 77 64-153 7-95 (253)
423 PRK12939 short chain dehydroge 78.1 12 0.00027 29.6 7.4 77 62-153 4-92 (250)
424 cd01080 NAD_bind_m-THF_DH_Cycl 78.1 5.6 0.00012 30.5 5.0 34 61-94 40-76 (168)
425 PRK07576 short chain dehydroge 78.0 15 0.00032 29.8 7.8 78 62-153 6-94 (264)
426 PRK08416 7-alpha-hydroxysteroi 77.9 17 0.00036 29.3 8.2 80 61-153 4-95 (260)
427 PLN02896 cinnamyl-alcohol dehy 77.7 36 0.00077 28.9 10.5 77 62-154 7-88 (353)
428 PRK06522 2-dehydropantoate 2-r 77.7 32 0.00069 28.4 10.0 96 67-182 2-100 (304)
429 PRK09908 xanthine dehydrogenas 77.7 3.3 7.1E-05 31.4 3.5 33 7-51 2-34 (159)
430 PF01795 Methyltransf_5: MraW 77.5 1.7 3.7E-05 36.7 2.2 45 62-106 18-65 (310)
431 PRK14106 murD UDP-N-acetylmura 77.4 50 0.0011 29.1 11.6 33 63-95 3-37 (450)
432 PRK06940 short chain dehydroge 77.4 34 0.00073 27.9 9.9 74 66-155 3-86 (275)
433 cd08237 ribitol-5-phosphate_DH 77.1 5 0.00011 34.1 5.0 90 63-182 162-256 (341)
434 PRK07677 short chain dehydroge 77.1 15 0.00032 29.4 7.5 75 65-153 1-86 (252)
435 cd05278 FDH_like Formaldehyde 77.0 9.5 0.00021 32.0 6.7 40 63-102 166-209 (347)
436 cd08285 NADP_ADH NADP(H)-depen 77.0 7.7 0.00017 32.9 6.1 41 62-102 164-208 (351)
437 PRK08217 fabG 3-ketoacyl-(acyl 76.9 16 0.00035 28.9 7.7 77 63-154 3-91 (253)
438 PRK05476 S-adenosyl-L-homocyst 76.7 19 0.00041 32.0 8.5 90 62-185 209-302 (425)
439 PRK01438 murD UDP-N-acetylmura 76.7 17 0.00038 32.4 8.6 49 61-109 12-64 (480)
440 PRK06114 short chain dehydroge 76.6 17 0.00037 29.1 7.8 79 62-155 5-96 (254)
441 cd08295 double_bond_reductase_ 76.6 18 0.00039 30.4 8.2 42 62-103 149-194 (338)
442 PRK08643 acetoin reductase; Va 76.5 16 0.00034 29.2 7.6 76 65-154 2-88 (256)
443 PRK08306 dipicolinate synthase 76.3 33 0.00072 28.7 9.6 35 61-95 148-184 (296)
444 PRK08340 glucose-1-dehydrogena 76.2 9.6 0.00021 30.7 6.3 72 67-153 2-84 (259)
445 cd01492 Aos1_SUMO Ubiquitin ac 76.2 14 0.0003 29.0 6.9 33 63-95 19-54 (197)
446 PLN02514 cinnamyl-alcohol dehy 76.2 22 0.00047 30.4 8.7 32 63-94 179-212 (357)
447 PRK06196 oxidoreductase; Provi 76.0 12 0.00025 31.3 6.9 76 61-155 22-109 (315)
448 cd05285 sorbitol_DH Sorbitol d 76.0 22 0.00048 29.9 8.7 41 61-101 159-203 (343)
449 PRK08226 short chain dehydroge 75.9 17 0.00036 29.2 7.6 78 63-155 4-92 (263)
450 PRK08993 2-deoxy-D-gluconate 3 75.9 14 0.0003 29.7 7.1 78 62-154 7-94 (253)
451 PRK06197 short chain dehydroge 75.9 13 0.00027 31.0 7.0 81 61-154 12-104 (306)
452 PRK05650 short chain dehydroge 75.9 9.6 0.00021 30.9 6.2 75 67-155 2-87 (270)
453 PRK12921 2-dehydropantoate 2-r 75.7 20 0.00042 29.8 8.2 99 67-182 2-102 (305)
454 PRK09489 rsmC 16S ribosomal RN 75.6 50 0.0011 28.3 10.7 41 143-187 74-117 (342)
455 COG4301 Uncharacterized conser 75.4 45 0.00098 27.5 9.8 112 63-187 77-198 (321)
456 PRK06500 short chain dehydroge 75.4 38 0.00082 26.7 9.5 33 63-95 4-39 (249)
457 cd08293 PTGR2 Prostaglandin re 75.3 7.3 0.00016 32.8 5.6 38 66-103 156-198 (345)
458 PRK09072 short chain dehydroge 75.2 15 0.00033 29.5 7.2 76 64-154 4-89 (263)
459 PF03721 UDPG_MGDP_dh_N: UDP-g 75.2 5.7 0.00012 30.8 4.5 104 67-183 2-121 (185)
460 PRK12429 3-hydroxybutyrate deh 75.1 13 0.00027 29.7 6.7 76 64-154 3-90 (258)
461 cd01075 NAD_bind_Leu_Phe_Val_D 75.1 12 0.00026 29.4 6.3 43 61-103 24-69 (200)
462 PRK07831 short chain dehydroge 75.0 18 0.00038 29.1 7.6 82 62-155 14-107 (262)
463 PRK11154 fadJ multifunctional 75.0 22 0.00047 33.8 9.0 103 66-177 310-420 (708)
464 COG0275 Predicted S-adenosylme 74.9 22 0.00047 30.0 7.9 48 62-109 21-72 (314)
465 PRK15116 sulfur acceptor prote 74.8 16 0.00034 30.3 7.1 34 62-95 27-63 (268)
466 TIGR03366 HpnZ_proposed putati 74.4 15 0.00032 30.2 7.0 96 63-182 119-218 (280)
467 PRK08945 putative oxoacyl-(acy 74.3 23 0.00051 28.1 8.1 44 61-105 8-56 (247)
468 PRK07533 enoyl-(acyl carrier p 74.3 19 0.00042 29.0 7.6 34 62-95 7-45 (258)
469 KOG2539 Mitochondrial/chloropl 74.1 11 0.00024 33.6 6.2 111 61-183 197-316 (491)
470 TIGR02354 thiF_fam2 thiamine b 74.0 41 0.00089 26.4 9.6 34 62-95 18-54 (200)
471 cd08232 idonate-5-DH L-idonate 73.9 51 0.0011 27.5 11.9 93 64-181 165-261 (339)
472 PRK15057 UDP-glucose 6-dehydro 73.8 61 0.0013 28.3 11.2 36 68-103 3-40 (388)
473 PLN02662 cinnamyl-alcohol dehy 73.8 16 0.00034 30.4 7.1 76 64-152 3-83 (322)
474 KOG1205 Predicted dehydrogenas 73.7 18 0.00039 30.2 7.2 83 61-155 8-101 (282)
475 cd08265 Zn_ADH3 Alcohol dehydr 73.7 14 0.0003 31.9 7.0 33 62-94 201-236 (384)
476 PRK09186 flagellin modificatio 73.4 14 0.0003 29.5 6.5 78 64-153 3-91 (256)
477 PRK08628 short chain dehydroge 73.3 13 0.00027 29.9 6.3 78 62-154 4-92 (258)
478 TIGR03201 dearomat_had 6-hydro 73.2 16 0.00035 30.9 7.2 41 62-102 164-207 (349)
479 PF01488 Shikimate_DH: Shikima 73.2 12 0.00026 27.3 5.5 77 61-158 8-88 (135)
480 PRK05875 short chain dehydroge 73.1 14 0.00031 29.9 6.6 78 63-153 5-94 (276)
481 PLN02989 cinnamyl-alcohol dehy 73.0 15 0.00033 30.6 6.9 78 64-154 4-86 (325)
482 PRK13394 3-hydroxybutyrate deh 73.0 15 0.00033 29.3 6.7 79 63-155 5-94 (262)
483 PRK06130 3-hydroxybutyryl-CoA 72.9 37 0.0008 28.4 9.2 40 66-105 5-47 (311)
484 PRK08278 short chain dehydroge 72.4 16 0.00034 29.8 6.7 78 63-154 4-99 (273)
485 PRK07889 enoyl-(acyl carrier p 72.4 17 0.00036 29.4 6.8 74 63-153 5-93 (256)
486 COG0240 GpsA Glycerol-3-phosph 72.2 28 0.0006 29.8 8.1 101 67-184 3-107 (329)
487 PRK07024 short chain dehydroge 72.0 15 0.00033 29.5 6.4 74 66-154 3-87 (257)
488 cd08261 Zn_ADH7 Alcohol dehydr 71.8 32 0.00069 28.8 8.6 40 62-101 157-199 (337)
489 KOG0780 Signal recognition par 71.7 40 0.00088 29.7 8.9 93 77-187 120-227 (483)
490 PF05050 Methyltransf_21: Meth 71.7 11 0.00024 27.8 5.2 40 70-109 1-49 (167)
491 COG0300 DltE Short-chain dehyd 71.4 24 0.00052 29.2 7.4 79 62-153 3-92 (265)
492 cd08233 butanediol_DH_like (2R 71.3 33 0.00071 29.0 8.6 40 62-101 170-213 (351)
493 PRK06200 2,3-dihydroxy-2,3-dih 71.3 19 0.00041 29.0 6.9 76 63-155 4-90 (263)
494 PRK07453 protochlorophyllide o 71.3 12 0.00025 31.4 5.8 77 64-154 5-92 (322)
495 PLN03209 translocon at the inn 71.2 27 0.00058 32.3 8.3 86 61-152 76-166 (576)
496 PRK07201 short chain dehydroge 71.0 14 0.00031 34.2 6.8 79 62-154 368-457 (657)
497 PRK06914 short chain dehydroge 71.0 25 0.00055 28.5 7.6 79 64-154 2-90 (280)
498 PF01210 NAD_Gly3P_dh_N: NAD-d 70.8 18 0.00039 27.1 6.2 99 68-182 2-103 (157)
499 PRK08644 thiamine biosynthesis 70.7 43 0.00093 26.6 8.6 34 62-95 25-61 (212)
500 PRK07454 short chain dehydroge 70.7 25 0.00054 27.8 7.4 77 64-155 5-93 (241)
No 1
>PF10294 Methyltransf_16: Putative methyltransferase; InterPro: IPR019410 There are a number of unidentified genes that have a high probability of coding for methyltransferases. They make up approximately 0.6-1.6% of the genes in the yeast, human, mouse, Drosophila melanogaster, Caenorhabditis elegans, Arabidopsis thaliana, and Escherichia coli genomes []. This entry represents putative nicotinamide N-methyltransferases involved in rDNA silencing and in lifespan determination. ; PDB: 3BZB_A.
Probab=99.97 E-value=9e-31 Score=202.55 Aligned_cols=167 Identities=39% Similarity=0.649 Sum_probs=103.7
Q ss_pred CeEEEEeeCCCCccccccccchHHHHHHHHhhhccCCCCCCCCCCCCeEEEeCCCccHHHHHHHHh--CCEEEEecchhh
Q 027530 20 GHQLQFSQDPNSKHLGTTVWDASVVFVKYLEKNCRKGRFCPSKLKGKRVIELGAGCGVAGFGMALL--GCNVITTDQIEV 97 (222)
Q Consensus 20 ~~~~~i~q~~~~~~~g~~~W~~~~~la~~l~~~~~~~~~~~~~~~~~~vLelGcG~G~~~i~la~~--g~~v~~~D~~~~ 97 (222)
+..++|.++. ...+|.++|+++.+|++|+..+.... ..+..+++++|||||||+|++|+.++++ +.+|++||++++
T Consensus 3 ~~~l~i~e~~-~~~~G~~vW~aa~~La~~l~~~~~~~-~~~~~~~~~~VLELGaG~Gl~gi~~a~~~~~~~Vv~TD~~~~ 80 (173)
T PF10294_consen 3 NKTLQIEEDW-GDGTGGKVWPAALVLARYLLSHSESE-FNPELFRGKRVLELGAGTGLPGIAAAKLFGAARVVLTDYNEV 80 (173)
T ss_dssp ---------------------HHHHHHHHHHH--------GGGTTTSEEEETT-TTSHHHHHHHHT-T-SEEEEEE-S-H
T ss_pred cccccccccc-ccCCcEEEechHHHHHHHHHHhcccc-cchhhcCCceEEEECCccchhHHHHHhccCCceEEEeccchh
Confidence 4567888887 45999999999999999999853110 0145788999999999999999999999 568999999779
Q ss_pred HHHHHHHHHHhhccccccCCCCCCCCCceEEEEeecCCCccccc-cCCCccEEEEeccccCccCHHHHHHHHHHhcCCCe
Q 027530 98 LPLLKRNVEWNTSRISQMNPGSGNLLGSIQAVELDWGNEDHIKA-VAPPFDYIIGTDVVYAEHLLEPLLQTIFALSGPKT 176 (222)
Q Consensus 98 l~~~~~n~~~n~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~-~~~~fD~Ii~~d~~y~~~~~~~ll~~~~~~l~~~g 176 (222)
++.++.|++.|+.. ...++.+..++|++...... ...+||+|+++|++|+.+.+++|++++.++++++|
T Consensus 81 l~~l~~Ni~~N~~~----------~~~~v~v~~L~Wg~~~~~~~~~~~~~D~IlasDv~Y~~~~~~~L~~tl~~ll~~~~ 150 (173)
T PF10294_consen 81 LELLRRNIELNGSL----------LDGRVSVRPLDWGDELDSDLLEPHSFDVILASDVLYDEELFEPLVRTLKRLLKPNG 150 (173)
T ss_dssp HHHHHHHHHTT------------------EEEE--TTS-HHHHHHS-SSBSEEEEES--S-GGGHHHHHHHHHHHBTT-T
T ss_pred hHHHHHHHHhcccc----------ccccccCcEEEecCcccccccccccCCEEEEecccchHHHHHHHHHHHHHHhCCCC
Confidence 99999999998731 23588999999998542222 24689999999999999999999999999999999
Q ss_pred EEEEEEEEcChhHHHHHHHHHhc
Q 027530 177 TILLGYEIRSTSVHEQMLQMWKS 199 (222)
Q Consensus 177 ~~~l~~~~r~~~~~~~f~~~~~~ 199 (222)
.++++++.|... ...|++++++
T Consensus 151 ~vl~~~~~R~~~-~~~F~~~~~k 172 (173)
T PF10294_consen 151 KVLLAYKRRRKS-EQEFFDRLKK 172 (173)
T ss_dssp TEEEEEE-S-TG-GCHHHHHH--
T ss_pred EEEEEeCEecHH-HHHHHHHhhh
Confidence 999999998654 4789888753
No 2
>COG4123 Predicted O-methyltransferase [General function prediction only]
Probab=99.83 E-value=8.4e-20 Score=146.56 Aligned_cols=162 Identities=23% Similarity=0.287 Sum_probs=129.1
Q ss_pred EEEeEcCeEEEEeeCCCCccccccccchHHHHHHHHhhhccCCCCCCCCCCCCeEEEeCCCccHHHHHHHHh-C-CEEEE
Q 027530 14 INLEVLGHQLQFSQDPNSKHLGTTVWDASVVFVKYLEKNCRKGRFCPSKLKGKRVIELGAGCGVAGFGMALL-G-CNVIT 91 (222)
Q Consensus 14 ~~~~~~~~~~~i~q~~~~~~~g~~~W~~~~~la~~l~~~~~~~~~~~~~~~~~~vLelGcG~G~~~i~la~~-g-~~v~~ 91 (222)
++--+.++.+.|.|++.++.+|.. +++|+.|..- . ..++|||||||+|++++++|++ . +++++
T Consensus 9 ~~~~~~~~~~~I~q~~~~~~~~~D----aiLL~~~~~~----------~-~~~~IlDlGaG~G~l~L~la~r~~~a~I~~ 73 (248)
T COG4123 9 IDNLFTFKQFFIIQDRCGFRYGTD----AILLAAFAPV----------P-KKGRILDLGAGNGALGLLLAQRTEKAKIVG 73 (248)
T ss_pred hcccccccceEEEeCCCccccccH----HHHHHhhccc----------c-cCCeEEEecCCcCHHHHHHhccCCCCcEEE
Confidence 333346788999999999999988 9999999852 2 3679999999999999999987 4 68999
Q ss_pred ecc-hhhHHHHHHHHHHhhccccccCCCCCCCCCceEEEEeecCCCccccccCCCccEEEEeccccCcc-----------
Q 027530 92 TDQ-IEVLPLLKRNVEWNTSRISQMNPGSGNLLGSIQAVELDWGNEDHIKAVAPPFDYIIGTDVVYAEH----------- 159 (222)
Q Consensus 92 ~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~fD~Ii~~d~~y~~~----------- 159 (222)
+|+ +++.+.|++|++.|.+. +++++.+.|..+..... ...+||+|++|+++|...
T Consensus 74 VEiq~~~a~~A~~nv~ln~l~------------~ri~v~~~Di~~~~~~~-~~~~fD~Ii~NPPyf~~~~~~~~~~~~~~ 140 (248)
T COG4123 74 VEIQEEAAEMAQRNVALNPLE------------ERIQVIEADIKEFLKAL-VFASFDLIICNPPYFKQGSRLNENPLRAI 140 (248)
T ss_pred EEeCHHHHHHHHHHHHhCcch------------hceeEehhhHHHhhhcc-cccccCEEEeCCCCCCCccccCcChhhhh
Confidence 999 56999999999999864 79999997776553322 234799999999998632
Q ss_pred -------CHHHHHHHHHHhcCCCeEEEEEEEEcChhHHHHHHHHHhc-CCeEEEe
Q 027530 160 -------LLEPLLQTIFALSGPKTTILLGYEIRSTSVHEQMLQMWKS-NFNVKLV 206 (222)
Q Consensus 160 -------~~~~ll~~~~~~l~~~g~~~l~~~~r~~~~~~~f~~~~~~-~~~v~~v 206 (222)
.++++++...++|||+|.++++++.- ...++.+.++. +|.+..+
T Consensus 141 Ar~e~~~~le~~i~~a~~~lk~~G~l~~V~r~e---rl~ei~~~l~~~~~~~k~i 192 (248)
T COG4123 141 ARHEITLDLEDLIRAAAKLLKPGGRLAFVHRPE---RLAEIIELLKSYNLEPKRI 192 (248)
T ss_pred hhhhhcCCHHHHHHHHHHHccCCCEEEEEecHH---HHHHHHHHHHhcCCCceEE
Confidence 37889999999999999999988653 34567777754 6665443
No 3
>PF05175 MTS: Methyltransferase small domain; InterPro: IPR007848 This domain is found in ribosomal RNA small subunit methyltransferase C and in other methyltransferases.; GO: 0008168 methyltransferase activity; PDB: 1WY7_A 1DUS_A 2OZV_A 2PJD_A 1VQ1_A 1NV9_A 1SG9_C 1NV8_A 3Q87_B 3DMF_A ....
Probab=99.82 E-value=7e-19 Score=135.80 Aligned_cols=136 Identities=26% Similarity=0.337 Sum_probs=106.8
Q ss_pred EEEEeeCCCCccccccccchHHHHHHHHhhhccCCCCCCCCCCCCeEEEeCCCccHHHHHHHHhCCE--EEEecc-hhhH
Q 027530 22 QLQFSQDPNSKHLGTTVWDASVVFVKYLEKNCRKGRFCPSKLKGKRVIELGAGCGVAGFGMALLGCN--VITTDQ-IEVL 98 (222)
Q Consensus 22 ~~~i~q~~~~~~~g~~~W~~~~~la~~l~~~~~~~~~~~~~~~~~~vLelGcG~G~~~i~la~~g~~--v~~~D~-~~~l 98 (222)
++++.+.|+.+..+ .+-.++.+|++++... ++++|||||||+|.+|+.+++.+.. |+++|+ ++++
T Consensus 1 ~~~~~~~~gvFs~~-~~d~~t~lL~~~l~~~-----------~~~~vLDlG~G~G~i~~~la~~~~~~~v~~vDi~~~a~ 68 (170)
T PF05175_consen 1 ELEFITHPGVFSPP-RLDAGTRLLLDNLPKH-----------KGGRVLDLGCGSGVISLALAKRGPDAKVTAVDINPDAL 68 (170)
T ss_dssp EEEEEEETTSTTTT-SHHHHHHHHHHHHHHH-----------TTCEEEEETSTTSHHHHHHHHTSTCEEEEEEESBHHHH
T ss_pred CEEEEECCCeeCCC-CCCHHHHHHHHHHhhc-----------cCCeEEEecCChHHHHHHHHHhCCCCEEEEEcCCHHHH
Confidence 47888889877533 4455688999999764 5679999999999999999998765 999999 6699
Q ss_pred HHHHHHHHHhhccccccCCCCCCCCCceEEEEeecCCCccccccCCCccEEEEeccccCcc-----CHHHHHHHHHHhcC
Q 027530 99 PLLKRNVEWNTSRISQMNPGSGNLLGSIQAVELDWGNEDHIKAVAPPFDYIIGTDVVYAEH-----LLEPLLQTIFALSG 173 (222)
Q Consensus 99 ~~~~~n~~~n~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~fD~Ii~~d~~y~~~-----~~~~ll~~~~~~l~ 173 (222)
+.+++|++.|++. ++++...|+.+.. .+.+||+|++++|++... ....+++...++|+
T Consensus 69 ~~a~~n~~~n~~~-------------~v~~~~~d~~~~~----~~~~fD~Iv~NPP~~~~~~~~~~~~~~~i~~a~~~Lk 131 (170)
T PF05175_consen 69 ELAKRNAERNGLE-------------NVEVVQSDLFEAL----PDGKFDLIVSNPPFHAGGDDGLDLLRDFIEQARRYLK 131 (170)
T ss_dssp HHHHHHHHHTTCT-------------TEEEEESSTTTTC----CTTCEEEEEE---SBTTSHCHHHHHHHHHHHHHHHEE
T ss_pred HHHHHHHHhcCcc-------------ccccccccccccc----cccceeEEEEccchhcccccchhhHHHHHHHHHHhcc
Confidence 9999999999853 3888887765432 258999999999987643 36778999999999
Q ss_pred CCeEEEEEEEEcC
Q 027530 174 PKTTILLGYEIRS 186 (222)
Q Consensus 174 ~~g~~~l~~~~r~ 186 (222)
|||.++++.....
T Consensus 132 ~~G~l~lv~~~~~ 144 (170)
T PF05175_consen 132 PGGRLFLVINSHL 144 (170)
T ss_dssp EEEEEEEEEETTS
T ss_pred CCCEEEEEeecCC
Confidence 9999998776433
No 4
>COG2264 PrmA Ribosomal protein L11 methylase [Translation, ribosomal structure and biogenesis]
Probab=99.82 E-value=3.4e-19 Score=146.62 Aligned_cols=157 Identities=24% Similarity=0.338 Sum_probs=121.0
Q ss_pred eEEEEeeCCCCccccccccchHHHHHHHHhhhccCCCCCCCCCCCCeEEEeCCCccHHHHHHHHhCCE-EEEecc-hhhH
Q 027530 21 HQLQFSQDPNSKHLGTTVWDASVVFVKYLEKNCRKGRFCPSKLKGKRVIELGAGCGVAGFGMALLGCN-VITTDQ-IEVL 98 (222)
Q Consensus 21 ~~~~i~q~~~~~~~g~~~W~~~~~la~~l~~~~~~~~~~~~~~~~~~vLelGcG~G~~~i~la~~g~~-v~~~D~-~~~l 98 (222)
.++.|.-+| +..+|+-.+|++.+..+++.+. ..+|++|||+|||+|.++|+++++|++ |+++|+ +.++
T Consensus 129 ~~~~i~lDP-GlAFGTG~HpTT~lcL~~Le~~---------~~~g~~vlDvGcGSGILaIAa~kLGA~~v~g~DiDp~AV 198 (300)
T COG2264 129 DELNIELDP-GLAFGTGTHPTTSLCLEALEKL---------LKKGKTVLDVGCGSGILAIAAAKLGAKKVVGVDIDPQAV 198 (300)
T ss_pred CceEEEEcc-ccccCCCCChhHHHHHHHHHHh---------hcCCCEEEEecCChhHHHHHHHHcCCceEEEecCCHHHH
Confidence 678889999 5566777779999999999865 458899999999999999999999995 999999 5599
Q ss_pred HHHHHHHHHhhccccccCCCCCCCCCceEEEEeecCCCccccccCCCccEEEEeccccCccCHHHHHHHHHHhcCCCeEE
Q 027530 99 PLLKRNVEWNTSRISQMNPGSGNLLGSIQAVELDWGNEDHIKAVAPPFDYIIGTDVVYAEHLLEPLLQTIFALSGPKTTI 178 (222)
Q Consensus 99 ~~~~~n~~~n~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~fD~Ii~~d~~y~~~~~~~ll~~~~~~l~~~g~~ 178 (222)
+.+++|+++|++.. .+.... ..... .....+||+|++|= + .+.+..+...+.++++|||.+
T Consensus 199 ~aa~eNa~~N~v~~------------~~~~~~---~~~~~-~~~~~~~DvIVANI-L--A~vl~~La~~~~~~lkpgg~l 259 (300)
T COG2264 199 EAARENARLNGVEL------------LVQAKG---FLLLE-VPENGPFDVIVANI-L--AEVLVELAPDIKRLLKPGGRL 259 (300)
T ss_pred HHHHHHHHHcCCch------------hhhccc---ccchh-hcccCcccEEEehh-h--HHHHHHHHHHHHHHcCCCceE
Confidence 99999999999641 111111 11111 11246999999984 3 556678999999999999999
Q ss_pred EEEEEEcChhHHHHHHHHH-hcCCeEEEecC
Q 027530 179 LLGYEIRSTSVHEQMLQMW-KSNFNVKLVPK 208 (222)
Q Consensus 179 ~l~~~~r~~~~~~~f~~~~-~~~~~v~~v~~ 208 (222)
+++.....+. +...+.+ +.+|.+..+..
T Consensus 260 IlSGIl~~q~--~~V~~a~~~~gf~v~~~~~ 288 (300)
T COG2264 260 ILSGILEDQA--ESVAEAYEQAGFEVVEVLE 288 (300)
T ss_pred EEEeehHhHH--HHHHHHHHhCCCeEeEEEe
Confidence 9999876653 5666666 56888765543
No 5
>KOG3201 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.81 E-value=1.7e-20 Score=138.95 Aligned_cols=158 Identities=24% Similarity=0.334 Sum_probs=122.4
Q ss_pred cccccc-ccchHHHHHHHHhhhccCCCCCCCCCCCCeEEEeCCC-ccHHHHHHHHhCC--EEEEecc-hhhHHHHHHHHH
Q 027530 32 KHLGTT-VWDASVVFVKYLEKNCRKGRFCPSKLKGKRVIELGAG-CGVAGFGMALLGC--NVITTDQ-IEVLPLLKRNVE 106 (222)
Q Consensus 32 ~~~g~~-~W~~~~~la~~l~~~~~~~~~~~~~~~~~~vLelGcG-~G~~~i~la~~g~--~v~~~D~-~~~l~~~~~n~~ 106 (222)
.++|.. +||+..+||.++..+ +..++|++|||||.| +|+.|+++|.... .|..||- +++++..++-.-
T Consensus 3 dntgnvciwpseeala~~~l~~-------~n~~rg~~ilelgggft~laglmia~~a~~~~v~ltdgne~svrnv~ki~~ 75 (201)
T KOG3201|consen 3 DNTGNVCIWPSEEALAWTILRD-------PNKIRGRRILELGGGFTGLAGLMIACKAPDSSVWLTDGNEESVRNVEKIRN 75 (201)
T ss_pred CCCCcEEecccHHHHHHHHHhc-------hhHHhHHHHHHhcCchhhhhhhheeeecCCceEEEecCCHHHHHHHHHHHh
Confidence 346665 999999999999988 778899999999999 4999999997754 6999998 569999988777
Q ss_pred HhhccccccCCCCCCCCCceEEEEeecCCCccccccCCCccEEEEeccccCccCHHHHHHHHHHhcCCCeEEEEEEEEcC
Q 027530 107 WNTSRISQMNPGSGNLLGSIQAVELDWGNEDHIKAVAPPFDYIIGTDVVYAEHLLEPLLQTIFALSGPKTTILLGYEIRS 186 (222)
Q Consensus 107 ~n~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~fD~Ii~~d~~y~~~~~~~ll~~~~~~l~~~g~~~l~~~~r~ 186 (222)
.|... ....+.+....|.... .......||+|+++||+|..+.++.|+++|+.+|+|.|+.++..+.|.
T Consensus 76 ~n~~s----------~~tsc~vlrw~~~~aq-sq~eq~tFDiIlaADClFfdE~h~sLvdtIk~lL~p~g~Al~fsPRRg 144 (201)
T KOG3201|consen 76 SNMAS----------SLTSCCVLRWLIWGAQ-SQQEQHTFDIILAADCLFFDEHHESLVDTIKSLLRPSGRALLFSPRRG 144 (201)
T ss_pred ccccc----------ccceehhhHHHHhhhH-HHHhhCcccEEEeccchhHHHHHHHHHHHHHHHhCcccceeEecCccc
Confidence 77432 1223333332222221 122356899999999999999999999999999999999888777665
Q ss_pred hhHHHHHHHHHh-cCCeEEEecC
Q 027530 187 TSVHEQMLQMWK-SNFNVKLVPK 208 (222)
Q Consensus 187 ~~~~~~f~~~~~-~~~~v~~v~~ 208 (222)
. .++.|++.+. .+|.+..-+.
T Consensus 145 ~-sL~kF~de~~~~gf~v~l~en 166 (201)
T KOG3201|consen 145 Q-SLQKFLDEVGTVGFTVCLEEN 166 (201)
T ss_pred c-hHHHHHHHHHhceeEEEeccc
Confidence 5 5899999985 5888865443
No 6
>PF06325 PrmA: Ribosomal protein L11 methyltransferase (PrmA); InterPro: IPR010456 This family consists of several Ribosomal protein L11 methyltransferase sequences. Its genetic determinant is prmA, which forms a bifunctional operon with the downstream panF gene []. The role of L11 methylation in ribosome function is, as yet, unknown. Deletion of the prmA gene in Escherichia coli showed no obvious effect [] except for the production of undermethylated forms of L11 []. Methylation is the most common post-transcriptional modification to ribosomal proteins in all organisms. PrmA is the only bacterial enzyme that catalyses the methylation of a ribosomal protein [].; GO: 0008276 protein methyltransferase activity, 0006479 protein methylation, 0005737 cytoplasm; PDB: 3GRZ_B 1F3L_A 2NXJ_B 3CJT_I 3CJQ_G 2NXE_A 2NXC_A 2ZBP_A 3EGV_A 3CJS_A ....
Probab=99.81 E-value=5.9e-19 Score=146.29 Aligned_cols=154 Identities=22% Similarity=0.352 Sum_probs=115.8
Q ss_pred cCeEEEEeeCCCCccccccccchHHHHHHHHhhhccCCCCCCCCCCCCeEEEeCCCccHHHHHHHHhCC-EEEEecc-hh
Q 027530 19 LGHQLQFSQDPNSKHLGTTVWDASVVFVKYLEKNCRKGRFCPSKLKGKRVIELGAGCGVAGFGMALLGC-NVITTDQ-IE 96 (222)
Q Consensus 19 ~~~~~~i~q~~~~~~~g~~~W~~~~~la~~l~~~~~~~~~~~~~~~~~~vLelGcG~G~~~i~la~~g~-~v~~~D~-~~ 96 (222)
.+.++.|..+| +..+|+-.++++.+..++|... ..+|++|||+|||+|+++++++++|+ +|+++|+ +.
T Consensus 126 ~~~~~~I~idP-g~AFGTG~H~TT~lcl~~l~~~---------~~~g~~vLDvG~GSGILaiaA~klGA~~v~a~DiDp~ 195 (295)
T PF06325_consen 126 PPDEIVIEIDP-GMAFGTGHHPTTRLCLELLEKY---------VKPGKRVLDVGCGSGILAIAAAKLGAKKVVAIDIDPL 195 (295)
T ss_dssp STTSEEEEEST-TSSS-SSHCHHHHHHHHHHHHH---------SSTTSEEEEES-TTSHHHHHHHHTTBSEEEEEESSCH
T ss_pred CCCcEEEEECC-CCcccCCCCHHHHHHHHHHHHh---------ccCCCEEEEeCCcHHHHHHHHHHcCCCeEEEecCCHH
Confidence 45678888899 5556666679999999999875 45778999999999999999999999 5999999 66
Q ss_pred hHHHHHHHHHHhhccccccCCCCCCCCCceEEEEeecCCCccccccCCCccEEEEeccccCccCHHHHHHHHHHhcCCCe
Q 027530 97 VLPLLKRNVEWNTSRISQMNPGSGNLLGSIQAVELDWGNEDHIKAVAPPFDYIIGTDVVYAEHLLEPLLQTIFALSGPKT 176 (222)
Q Consensus 97 ~l~~~~~n~~~n~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~fD~Ii~~d~~y~~~~~~~ll~~~~~~l~~~g 176 (222)
+++.+++|++.|++. .++.+. . ..+ ....+||+|++|=. .+.+..+...+.++++|+|
T Consensus 196 Av~~a~~N~~~N~~~------------~~~~v~----~-~~~--~~~~~~dlvvANI~---~~vL~~l~~~~~~~l~~~G 253 (295)
T PF06325_consen 196 AVEAARENAELNGVE------------DRIEVS----L-SED--LVEGKFDLVVANIL---ADVLLELAPDIASLLKPGG 253 (295)
T ss_dssp HHHHHHHHHHHTT-T------------TCEEES----C-TSC--TCCS-EEEEEEES----HHHHHHHHHHCHHHEEEEE
T ss_pred HHHHHHHHHHHcCCC------------eeEEEE----E-ecc--cccccCCEEEECCC---HHHHHHHHHHHHHhhCCCC
Confidence 999999999999974 344442 1 111 12489999999833 3455678888888999999
Q ss_pred EEEEEEEEcChhHHHHHHHHHhcCCeEEEe
Q 027530 177 TILLGYEIRSTSVHEQMLQMWKSNFNVKLV 206 (222)
Q Consensus 177 ~~~l~~~~r~~~~~~~f~~~~~~~~~v~~v 206 (222)
.++++....... ..+.+.++++|.+...
T Consensus 254 ~lIlSGIl~~~~--~~v~~a~~~g~~~~~~ 281 (295)
T PF06325_consen 254 YLILSGILEEQE--DEVIEAYKQGFELVEE 281 (295)
T ss_dssp EEEEEEEEGGGH--HHHHHHHHTTEEEEEE
T ss_pred EEEEccccHHHH--HHHHHHHHCCCEEEEE
Confidence 999998877653 5666666668877443
No 7
>COG2227 UbiG 2-polyprenyl-3-methyl-5-hydroxy-6-metoxy-1,4-benzoquinol methylase [Coenzyme metabolism]
Probab=99.80 E-value=1.4e-19 Score=143.14 Aligned_cols=109 Identities=21% Similarity=0.262 Sum_probs=93.4
Q ss_pred CCCCeEEEeCCCccHHHHHHHHhCCEEEEecc-hhhHHHHHHHHHHhhccccccCCCCCCCCCceEEEEeecCCCccccc
Q 027530 63 LKGKRVIELGAGCGVAGFGMALLGCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSGNLLGSIQAVELDWGNEDHIKA 141 (222)
Q Consensus 63 ~~~~~vLelGcG~G~~~i~la~~g~~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~ 141 (222)
++|++|||+|||-|+++..+|+.|++|+++|. +++++.++..+.++++. +.+.+.. .+++..
T Consensus 58 l~g~~vLDvGCGgG~Lse~mAr~Ga~VtgiD~se~~I~~Ak~ha~e~gv~--------------i~y~~~~---~edl~~ 120 (243)
T COG2227 58 LPGLRVLDVGCGGGILSEPLARLGASVTGIDASEKPIEVAKLHALESGVN--------------IDYRQAT---VEDLAS 120 (243)
T ss_pred CCCCeEEEecCCccHhhHHHHHCCCeeEEecCChHHHHHHHHhhhhcccc--------------ccchhhh---HHHHHh
Confidence 68999999999999999999999999999999 55999999999988752 3344322 233333
Q ss_pred cCCCccEEEEeccccCccCHHHHHHHHHHhcCCCeEEEEEEEEcChh
Q 027530 142 VAPPFDYIIGTDVVYAEHLLEPLLQTIFALSGPKTTILLGYEIRSTS 188 (222)
Q Consensus 142 ~~~~fD~Ii~~d~~y~~~~~~~ll~~~~~~l~~~g~~~l~~~~r~~~ 188 (222)
..++||+|++++++.|.++...+++.+.+++||||.++++...|+..
T Consensus 121 ~~~~FDvV~cmEVlEHv~dp~~~~~~c~~lvkP~G~lf~STinrt~k 167 (243)
T COG2227 121 AGGQFDVVTCMEVLEHVPDPESFLRACAKLVKPGGILFLSTINRTLK 167 (243)
T ss_pred cCCCccEEEEhhHHHccCCHHHHHHHHHHHcCCCcEEEEeccccCHH
Confidence 34799999999999999999999999999999999999999998874
No 8
>KOG2793 consensus Putative N2,N2-dimethylguanosine tRNA methyltransferase [RNA processing and modification]
Probab=99.80 E-value=2e-18 Score=138.64 Aligned_cols=168 Identities=31% Similarity=0.458 Sum_probs=127.5
Q ss_pred CccccccccchHHHHHHHHhhhccCCCCCCCC--C--CCCeEEEeCCCccHHHHHHHH-hCCEEEEecchhhHHHHHHHH
Q 027530 31 SKHLGTTVWDASVVFVKYLEKNCRKGRFCPSK--L--KGKRVIELGAGCGVAGFGMAL-LGCNVITTDQIEVLPLLKRNV 105 (222)
Q Consensus 31 ~~~~g~~~W~~~~~la~~l~~~~~~~~~~~~~--~--~~~~vLelGcG~G~~~i~la~-~g~~v~~~D~~~~l~~~~~n~ 105 (222)
.-.+...+|+++..+++++....+........ + +.++|||||+|||++|+.+|. .+++|+.+|.+..+..++.|.
T Consensus 49 ~~~~~~~~w~~~~~la~~~~~~~~~~~~~~~~~g~~~~~~~vlELGsGtglvG~~aa~~~~~~v~ltD~~~~~~~L~~~~ 128 (248)
T KOG2793|consen 49 EQGISAYLWSCATTLAQPLWERRRDSELTATLIGFKTKYINVLELGSGTGLVGILAALLLGAEVVLTDLPKVVENLKFNR 128 (248)
T ss_pred ccceeeEEeehhhccchhhhhhhcCchhhhccccccccceeEEEecCCccHHHHHHHHHhcceeccCCchhhHHHHHHhh
Confidence 45677889999999999998764321110001 1 245699999999999999998 578999999999888888888
Q ss_pred HHhhccccccCCCCCCCCCceEEEEeecCCCccccccCCC-ccEEEEeccccCccCHHHHHHHHHHhcCCCeEEEEEEEE
Q 027530 106 EWNTSRISQMNPGSGNLLGSIQAVELDWGNEDHIKAVAPP-FDYIIGTDVVYAEHLLEPLLQTIFALSGPKTTILLGYEI 184 (222)
Q Consensus 106 ~~n~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~-fD~Ii~~d~~y~~~~~~~ll~~~~~~l~~~g~~~l~~~~ 184 (222)
..|.....+ ....+.+..++|++........+. ||+|+++|++|..+..+.++.++..+|..+++++++++.
T Consensus 129 ~~~~~~l~~-------~g~~v~v~~L~Wg~~~~~~~~~~~~~DlilasDvvy~~~~~e~Lv~tla~ll~~~~~i~l~~~l 201 (248)
T KOG2793|consen 129 DKNNIALNQ-------LGGSVIVAILVWGNALDVSFRLPNPFDLILASDVVYEEESFEGLVKTLAFLLAKDGTIFLAYPL 201 (248)
T ss_pred hhhhhhhhh-------cCCceeEEEEecCCcccHhhccCCcccEEEEeeeeecCCcchhHHHHHHHHHhcCCeEEEEEec
Confidence 777655321 234789999999998766544445 999999999999999999999999999998999999999
Q ss_pred cChhHHHH---HHHHHhcCCeEEE
Q 027530 185 RSTSVHEQ---MLQMWKSNFNVKL 205 (222)
Q Consensus 185 r~~~~~~~---f~~~~~~~~~v~~ 205 (222)
|.....+. |..+....+.+..
T Consensus 202 r~~~~~~~~~~~~~~~~~~~~v~~ 225 (248)
T KOG2793|consen 202 RRDAAWEIEVLLFKKDLKIFDVVQ 225 (248)
T ss_pred ccchHHHHHHHHhhhhhccceeee
Confidence 88643333 3333334555543
No 9
>COG3897 Predicted methyltransferase [General function prediction only]
Probab=99.76 E-value=1.2e-18 Score=133.28 Aligned_cols=156 Identities=23% Similarity=0.377 Sum_probs=121.2
Q ss_pred CCCCCCcceEEEeEcCeEEEEeeCCC--------CccccccccchHHHHHHHHhhhccCCCCCCCCCCCCeEEEeCCCcc
Q 027530 5 RLNSPSTSVINLEVLGHQLQFSQDPN--------SKHLGTTVWDASVVFVKYLEKNCRKGRFCPSKLKGKRVIELGAGCG 76 (222)
Q Consensus 5 ~~~~~~~~~~~~~~~~~~~~i~q~~~--------~~~~g~~~W~~~~~la~~l~~~~~~~~~~~~~~~~~~vLelGcG~G 76 (222)
+..+|-...+.++..+..-...+... ...++...|.+++.+|+|+..+ |...+|++|||+|+|+|
T Consensus 19 ~~p~p~~Pe~rl~la~~~~~l~~~~~e~l~~ig~pPpfwa~~WagG~~lAR~i~~~-------PetVrgkrVLd~gagsg 91 (218)
T COG3897 19 LLPPPHVPEIRLHLADEAHELWDRAKEELRLIGLPPPFWAFAWAGGQVLARYIDDH-------PETVRGKRVLDLGAGSG 91 (218)
T ss_pred cCCCCCCchhheeecccccchHhHhHHHHHhcCCCchHHHHHHhhhHHHHHHHhcC-------ccccccceeeecccccC
Confidence 34444444566655544333332221 3457889999999999999999 88999999999999999
Q ss_pred HHHHHHHHhCCE-EEEecc-hhhHHHHHHHHHHhhccccccCCCCCCCCCceEEEEeecCCCccccccCCCccEEEEecc
Q 027530 77 VAGFGMALLGCN-VITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSGNLLGSIQAVELDWGNEDHIKAVAPPFDYIIGTDV 154 (222)
Q Consensus 77 ~~~i~la~~g~~-v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~fD~Ii~~d~ 154 (222)
+++|++++.|+. |+.+|+ +..+..++.|++.|+. .+.+...|... .+..||+|+++|+
T Consensus 92 LvaIAaa~aGA~~v~a~d~~P~~~~ai~lNa~angv--------------~i~~~~~d~~g------~~~~~Dl~LagDl 151 (218)
T COG3897 92 LVAIAAARAGAAEVVAADIDPWLEQAIRLNAAANGV--------------SILFTHADLIG------SPPAFDLLLAGDL 151 (218)
T ss_pred hHHHHHHHhhhHHHHhcCCChHHHHHhhcchhhccc--------------eeEEeeccccC------CCcceeEEEeece
Confidence 999999999995 999999 6688899999999984 45666544332 3678999999999
Q ss_pred ccCccCHHHHHHHHHHhcCCCeEEEEEEEEcCh
Q 027530 155 VYAEHLLEPLLQTIFALSGPKTTILLGYEIRST 187 (222)
Q Consensus 155 ~y~~~~~~~ll~~~~~~l~~~g~~~l~~~~r~~ 187 (222)
+|+......++.+..++...|-.+++..+.|..
T Consensus 152 fy~~~~a~~l~~~~~~l~~~g~~vlvgdp~R~~ 184 (218)
T COG3897 152 FYNHTEADRLIPWKDRLAEAGAAVLVGDPGRAY 184 (218)
T ss_pred ecCchHHHHHHHHHHHHHhCCCEEEEeCCCCCC
Confidence 999999999999766666667777777777765
No 10
>PRK15001 SAM-dependent 23S ribosomal RNA mG1835 methyltransferase; Provisional
Probab=99.74 E-value=1.3e-16 Score=136.68 Aligned_cols=147 Identities=13% Similarity=0.126 Sum_probs=111.8
Q ss_pred cceEEEeEcCeEEEEeeCCCCccccccccchHHHHHHHHhhhccCCCCCCCCCCCCeEEEeCCCccHHHHHHHHhC--CE
Q 027530 11 TSVINLEVLGHQLQFSQDPNSKHLGTTVWDASVVFVKYLEKNCRKGRFCPSKLKGKRVIELGAGCGVAGFGMALLG--CN 88 (222)
Q Consensus 11 ~~~~~~~~~~~~~~i~q~~~~~~~g~~~W~~~~~la~~l~~~~~~~~~~~~~~~~~~vLelGcG~G~~~i~la~~g--~~ 88 (222)
..++++++.+..+++...++.+..+ .+-.++.+|.+++.. . .+.+|||||||+|.+++.+++.+ ++
T Consensus 187 ~~~~~~~~~~~~~~~~~~~gVFs~~-~LD~GtrllL~~lp~----------~-~~~~VLDLGCGtGvi~i~la~~~P~~~ 254 (378)
T PRK15001 187 PQTVSWKLEGTDWTIHNHANVFSRT-GLDIGARFFMQHLPE----------N-LEGEIVDLGCGNGVIGLTLLDKNPQAK 254 (378)
T ss_pred CceeEEEEcCceEEEEecCCccCCC-CcChHHHHHHHhCCc----------c-cCCeEEEEeccccHHHHHHHHhCCCCE
Confidence 3467888899999999999876644 566778888887742 2 23589999999999999999874 58
Q ss_pred EEEecch-hhHHHHHHHHHHhhccccccCCCCCCCCCceEEEEeecCCCccccccCCCccEEEEeccccCcc-----CHH
Q 027530 89 VITTDQI-EVLPLLKRNVEWNTSRISQMNPGSGNLLGSIQAVELDWGNEDHIKAVAPPFDYIIGTDVVYAEH-----LLE 162 (222)
Q Consensus 89 v~~~D~~-~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~fD~Ii~~d~~y~~~-----~~~ 162 (222)
|+++|.+ .+++.+++|++.|+.. ...++++...|.... ....+||+|++|++++... ...
T Consensus 255 V~~vD~S~~Av~~A~~N~~~n~~~----------~~~~v~~~~~D~l~~----~~~~~fDlIlsNPPfh~~~~~~~~ia~ 320 (378)
T PRK15001 255 VVFVDESPMAVASSRLNVETNMPE----------ALDRCEFMINNALSG----VEPFRFNAVLCNPPFHQQHALTDNVAW 320 (378)
T ss_pred EEEEECCHHHHHHHHHHHHHcCcc----------cCceEEEEEcccccc----CCCCCEEEEEECcCcccCccCCHHHHH
Confidence 9999995 5999999999988632 112566665443221 1245899999999986532 356
Q ss_pred HHHHHHHHhcCCCeEEEEEEE
Q 027530 163 PLLQTIFALSGPKTTILLGYE 183 (222)
Q Consensus 163 ~ll~~~~~~l~~~g~~~l~~~ 183 (222)
.+++.+.++|+|||.++++..
T Consensus 321 ~l~~~a~~~LkpGG~L~iV~n 341 (378)
T PRK15001 321 EMFHHARRCLKINGELYIVAN 341 (378)
T ss_pred HHHHHHHHhcccCCEEEEEEe
Confidence 788999999999999999864
No 11
>PF12847 Methyltransf_18: Methyltransferase domain; PDB: 3G2Q_A 3G2O_A 3G2M_B 3G2P_B 3D2L_B 1IM8_B 3NJR_A 3E05_H 3EVZ_A 3HM2_A ....
Probab=99.73 E-value=4e-17 Score=116.96 Aligned_cols=104 Identities=23% Similarity=0.298 Sum_probs=82.8
Q ss_pred CCCeEEEeCCCccHHHHHHHH--hCCEEEEecc-hhhHHHHHHHHHHhhccccccCCCCCCCCCceEEEEeecCCCcccc
Q 027530 64 KGKRVIELGAGCGVAGFGMAL--LGCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSGNLLGSIQAVELDWGNEDHIK 140 (222)
Q Consensus 64 ~~~~vLelGcG~G~~~i~la~--~g~~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~ 140 (222)
++.+|||||||+|..++.+++ .+++|+++|+ +++++.+++++...+. ..++++.+.|+ . ...
T Consensus 1 p~~~vLDlGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~------------~~~i~~~~~d~-~--~~~ 65 (112)
T PF12847_consen 1 PGGRVLDLGCGTGRLSIALARLFPGARVVGVDISPEMLEIARERAAEEGL------------SDRITFVQGDA-E--FDP 65 (112)
T ss_dssp TTCEEEEETTTTSHHHHHHHHHHTTSEEEEEESSHHHHHHHHHHHHHTTT------------TTTEEEEESCC-H--GGT
T ss_pred CCCEEEEEcCcCCHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHhcCC------------CCCeEEEECcc-c--cCc
Confidence 468999999999999999999 6889999999 6799999999965543 46899999777 1 112
Q ss_pred ccCCCccEEEEec-cccC---ccCHHHHHHHHHHhcCCCeEEEEEE
Q 027530 141 AVAPPFDYIIGTD-VVYA---EHLLEPLLQTIFALSGPKTTILLGY 182 (222)
Q Consensus 141 ~~~~~fD~Ii~~d-~~y~---~~~~~~ll~~~~~~l~~~g~~~l~~ 182 (222)
...++||+|++.. +..+ .+....+++.+.+.|+|||++++..
T Consensus 66 ~~~~~~D~v~~~~~~~~~~~~~~~~~~~l~~~~~~L~pgG~lvi~~ 111 (112)
T PF12847_consen 66 DFLEPFDLVICSGFTLHFLLPLDERRRVLERIRRLLKPGGRLVINT 111 (112)
T ss_dssp TTSSCEEEEEECSGSGGGCCHHHHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred ccCCCCCEEEECCCccccccchhHHHHHHHHHHHhcCCCcEEEEEE
Confidence 2356799999998 3321 1345678999999999999998865
No 12
>TIGR00406 prmA ribosomal protein L11 methyltransferase. Ribosomal protein L11 methyltransferase is an S-adenosyl-L-methionine-dependent methyltransferase required for the modification of ribosomal protein L11. This protein is found in bacteria and (with a probable transit peptide) in Arabidopsis.
Probab=99.72 E-value=3.3e-16 Score=130.54 Aligned_cols=156 Identities=20% Similarity=0.307 Sum_probs=113.5
Q ss_pred CeEEEEeeCCCCccccccccchHHHHHHHHhhhccCCCCCCCCCCCCeEEEeCCCccHHHHHHHHhCC-EEEEecc-hhh
Q 027530 20 GHQLQFSQDPNSKHLGTTVWDASVVFVKYLEKNCRKGRFCPSKLKGKRVIELGAGCGVAGFGMALLGC-NVITTDQ-IEV 97 (222)
Q Consensus 20 ~~~~~i~q~~~~~~~g~~~W~~~~~la~~l~~~~~~~~~~~~~~~~~~vLelGcG~G~~~i~la~~g~-~v~~~D~-~~~ 97 (222)
...+.+..+| +..+|+..++++.+..+++... ..++++|||+|||+|.+++.++++|+ +|+++|+ +.+
T Consensus 125 ~~~~~i~ldp-g~aFgtG~h~tt~l~l~~l~~~---------~~~g~~VLDvGcGsG~lai~aa~~g~~~V~avDid~~a 194 (288)
T TIGR00406 125 EDALIIMLDP-GLAFGTGTHPTTSLCLEWLEDL---------DLKDKNVIDVGCGSGILSIAALKLGAAKVVGIDIDPLA 194 (288)
T ss_pred CCcEEEEECC-CCcccCCCCHHHHHHHHHHHhh---------cCCCCEEEEeCCChhHHHHHHHHcCCCeEEEEECCHHH
Confidence 4567788888 4455555668888888887653 33678999999999999999999887 7999999 569
Q ss_pred HHHHHHHHHHhhccccccCCCCCCCCCceEEEEeecCCCccccccCCCccEEEEeccccCccCHHHHHHHHHHhcCCCeE
Q 027530 98 LPLLKRNVEWNTSRISQMNPGSGNLLGSIQAVELDWGNEDHIKAVAPPFDYIIGTDVVYAEHLLEPLLQTIFALSGPKTT 177 (222)
Q Consensus 98 l~~~~~n~~~n~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~fD~Ii~~d~~y~~~~~~~ll~~~~~~l~~~g~ 177 (222)
++.+++|+..|++. .++.+...+ . .....++||+|+++-+ .+.+..++..+.++|+|||.
T Consensus 195 l~~a~~n~~~n~~~------------~~~~~~~~~---~--~~~~~~~fDlVvan~~---~~~l~~ll~~~~~~LkpgG~ 254 (288)
T TIGR00406 195 VESARKNAELNQVS------------DRLQVKLIY---L--EQPIEGKADVIVANIL---AEVIKELYPQFSRLVKPGGW 254 (288)
T ss_pred HHHHHHHHHHcCCC------------cceEEEecc---c--ccccCCCceEEEEecC---HHHHHHHHHHHHHHcCCCcE
Confidence 99999999988753 244444322 1 1123568999998744 33456788999999999999
Q ss_pred EEEEEEEcChhHHHHHHHHHhcCCeEEEec
Q 027530 178 ILLGYEIRSTSVHEQMLQMWKSNFNVKLVP 207 (222)
Q Consensus 178 ~~l~~~~r~~~~~~~f~~~~~~~~~v~~v~ 207 (222)
++++...+.. ...+.+.++..|.+..+.
T Consensus 255 li~sgi~~~~--~~~v~~~~~~~f~~~~~~ 282 (288)
T TIGR00406 255 LILSGILETQ--AQSVCDAYEQGFTVVEIR 282 (288)
T ss_pred EEEEeCcHhH--HHHHHHHHHccCceeeEe
Confidence 9998765443 355666665557665443
No 13
>TIGR00537 hemK_rel_arch HemK-related putative methylase. The gene hemK from E. coli was found to contribute to heme biosynthesis and originally suggested to be protoporphyrinogen oxidase (Medline 95189105). Functional analysis of the nearest homolog in Saccharomyces cerevisiae, YNL063w, finds it is not protoporphyrinogen oxidase and sequence analysis suggests that HemK homologs have S-adenosyl-methionine-dependent methyltransferase activity (Medline 99237242). Homologs are found, usually in a single copy, in nearly all completed genomes, but varying somewhat in apparent domain architecture. This model represents an archaeal and eukaryotic protein family that lacks an N-terminal domain found in HemK and its eubacterial homologs. It is found in a single copy in the first six completed archaeal and eukaryotic genomes.
Probab=99.72 E-value=4.4e-16 Score=121.09 Aligned_cols=138 Identities=20% Similarity=0.226 Sum_probs=103.0
Q ss_pred HHHHHHHHhhhccCCCCCCCCCCCCeEEEeCCCccHHHHHHHHhCCEEEEecc-hhhHHHHHHHHHHhhccccccCCCCC
Q 027530 42 SVVFVKYLEKNCRKGRFCPSKLKGKRVIELGAGCGVAGFGMALLGCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSG 120 (222)
Q Consensus 42 ~~~la~~l~~~~~~~~~~~~~~~~~~vLelGcG~G~~~i~la~~g~~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~ 120 (222)
+.+|.+++.. .++++|||+|||+|..++.+++.+.+|+++|+ +++++.+++|++.++.
T Consensus 8 ~~~l~~~l~~-----------~~~~~vLdlG~G~G~~~~~l~~~~~~v~~vD~s~~~~~~a~~~~~~~~~---------- 66 (179)
T TIGR00537 8 SLLLEANLRE-----------LKPDDVLEIGAGTGLVAIRLKGKGKCILTTDINPFAVKELRENAKLNNV---------- 66 (179)
T ss_pred HHHHHHHHHh-----------cCCCeEEEeCCChhHHHHHHHhcCCEEEEEECCHHHHHHHHHHHHHcCC----------
Confidence 4566666642 35578999999999999999998889999999 6799999999987752
Q ss_pred CCCCceEEEEeecCCCccccccCCCccEEEEeccccCccC---------------------HHHHHHHHHHhcCCCeEEE
Q 027530 121 NLLGSIQAVELDWGNEDHIKAVAPPFDYIIGTDVVYAEHL---------------------LEPLLQTIFALSGPKTTIL 179 (222)
Q Consensus 121 ~~~~~v~~~~~d~~~~~~~~~~~~~fD~Ii~~d~~y~~~~---------------------~~~ll~~~~~~l~~~g~~~ 179 (222)
++++...|+.+. ..++||+|+++++++.... ...+++.+.++|+|||.++
T Consensus 67 ----~~~~~~~d~~~~-----~~~~fD~Vi~n~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~Lk~gG~~~ 137 (179)
T TIGR00537 67 ----GLDVVMTDLFKG-----VRGKFDVILFNPPYLPLEDDLRRGDWLDVAIDGGKDGRKVIDRFLDELPEILKEGGRVQ 137 (179)
T ss_pred ----ceEEEEcccccc-----cCCcccEEEECCCCCCCcchhcccchhhhhhhcCCchHHHHHHHHHhHHHhhCCCCEEE
Confidence 467777666442 1358999999988764321 4568889999999999998
Q ss_pred EEEEEcChhHHHHHHHHH-hcCCeEEEecCCCC
Q 027530 180 LGYEIRSTSVHEQMLQMW-KSNFNVKLVPKAKE 211 (222)
Q Consensus 180 l~~~~r~~~~~~~f~~~~-~~~~~v~~v~~~~~ 211 (222)
+....... ...+.+.+ +.+|.++.+....+
T Consensus 138 ~~~~~~~~--~~~~~~~l~~~gf~~~~~~~~~~ 168 (179)
T TIGR00537 138 LIQSSLNG--EPDTFDKLDERGFRYEIVAERGL 168 (179)
T ss_pred EEEeccCC--hHHHHHHHHhCCCeEEEEEEeec
Confidence 88765442 24455555 45888877766543
No 14
>COG2813 RsmC 16S RNA G1207 methylase RsmC [Translation, ribosomal structure and biogenesis]
Probab=99.72 E-value=3.9e-16 Score=127.97 Aligned_cols=139 Identities=21% Similarity=0.270 Sum_probs=106.7
Q ss_pred EcCeEEEEeeCCCCccccccccchHHHHHHHHhhhccCCCCCCCCCCCCeEEEeCCCccHHHHHHHHhCC--EEEEecch
Q 027530 18 VLGHQLQFSQDPNSKHLGTTVWDASVVFVKYLEKNCRKGRFCPSKLKGKRVIELGAGCGVAGFGMALLGC--NVITTDQI 95 (222)
Q Consensus 18 ~~~~~~~i~q~~~~~~~g~~~W~~~~~la~~l~~~~~~~~~~~~~~~~~~vLelGcG~G~~~i~la~~g~--~v~~~D~~ 95 (222)
..+.++++...|+.+..+ .+-.++.+|++-+. ....+ +|||||||.|.+|+.+++... +++++|.+
T Consensus 124 ~~~~~~~~~t~pGVFS~~-~lD~GS~lLl~~l~----------~~~~~-~vlDlGCG~Gvlg~~la~~~p~~~vtmvDvn 191 (300)
T COG2813 124 LLGHELTFKTLPGVFSRD-KLDKGSRLLLETLP----------PDLGG-KVLDLGCGYGVLGLVLAKKSPQAKLTLVDVN 191 (300)
T ss_pred hccCceEEEeCCCCCcCC-CcChHHHHHHHhCC----------ccCCC-cEEEeCCCccHHHHHHHHhCCCCeEEEEecC
Confidence 448999999999877665 55667888888774 33444 999999999999999999875 79999995
Q ss_pred h-hHHHHHHHHHHhhccccccCCCCCCCCCceEEEEeecCCCccccccCCCccEEEEeccccCccC-----HHHHHHHHH
Q 027530 96 E-VLPLLKRNVEWNTSRISQMNPGSGNLLGSIQAVELDWGNEDHIKAVAPPFDYIIGTDVVYAEHL-----LEPLLQTIF 169 (222)
Q Consensus 96 ~-~l~~~~~n~~~n~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~fD~Ii~~d~~y~~~~-----~~~ll~~~~ 169 (222)
. +++.+++|+..|+.. +..+...+.. +. ...+||.||+|++++.... ...++....
T Consensus 192 ~~Av~~ar~Nl~~N~~~-------------~~~v~~s~~~---~~--v~~kfd~IisNPPfh~G~~v~~~~~~~~i~~A~ 253 (300)
T COG2813 192 ARAVESARKNLAANGVE-------------NTEVWASNLY---EP--VEGKFDLIISNPPFHAGKAVVHSLAQEIIAAAA 253 (300)
T ss_pred HHHHHHHHHhHHHcCCC-------------ccEEEEeccc---cc--ccccccEEEeCCCccCCcchhHHHHHHHHHHHH
Confidence 4 999999999999854 2233332222 11 1349999999999986432 346889999
Q ss_pred HhcCCCeEEEEEEEEcCh
Q 027530 170 ALSGPKTTILLGYEIRST 187 (222)
Q Consensus 170 ~~l~~~g~~~l~~~~r~~ 187 (222)
++|++||.++|+.. |..
T Consensus 254 ~~L~~gGeL~iVan-~~l 270 (300)
T COG2813 254 RHLKPGGELWIVAN-RHL 270 (300)
T ss_pred HhhccCCEEEEEEc-CCC
Confidence 99999999999887 444
No 15
>KOG1270 consensus Methyltransferases [Coenzyme transport and metabolism]
Probab=99.71 E-value=1.4e-17 Score=132.80 Aligned_cols=108 Identities=19% Similarity=0.310 Sum_probs=87.1
Q ss_pred CCCCeEEEeCCCccHHHHHHHHhCCEEEEecc-hhhHHHHHHHHHHhhccccccCCCCCCCCCc----eEEEEeecCCCc
Q 027530 63 LKGKRVIELGAGCGVAGFGMALLGCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSGNLLGS----IQAVELDWGNED 137 (222)
Q Consensus 63 ~~~~~vLelGcG~G~~~i~la~~g~~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~----v~~~~~d~~~~~ 137 (222)
+.|++|||+|||+|+++..||++|++|+|+|. ++|++.|++....+-.. ... +.+...+..
T Consensus 88 ~~g~~ilDvGCGgGLLSepLArlga~V~GID~s~~~V~vA~~h~~~dP~~-----------~~~~~y~l~~~~~~~E--- 153 (282)
T KOG1270|consen 88 LLGMKILDVGCGGGLLSEPLARLGAQVTGIDASDDMVEVANEHKKMDPVL-----------EGAIAYRLEYEDTDVE--- 153 (282)
T ss_pred cCCceEEEeccCccccchhhHhhCCeeEeecccHHHHHHHHHhhhcCchh-----------ccccceeeehhhcchh---
Confidence 45788999999999999999999999999999 66999999885443321 122 333332222
Q ss_pred cccccCCCccEEEEeccccCccCHHHHHHHHHHhcCCCeEEEEEEEEcCh
Q 027530 138 HIKAVAPPFDYIIGTDVVYAEHLLEPLLQTIFALSGPKTTILLGYEIRST 187 (222)
Q Consensus 138 ~~~~~~~~fD~Ii~~d~~y~~~~~~~ll~~~~~~l~~~g~~~l~~~~r~~ 187 (222)
...++||.|++++++.|..+...+++.+.++|+|+|+++++...|..
T Consensus 154 ---~~~~~fDaVvcsevleHV~dp~~~l~~l~~~lkP~G~lfittinrt~ 200 (282)
T KOG1270|consen 154 ---GLTGKFDAVVCSEVLEHVKDPQEFLNCLSALLKPNGRLFITTINRTI 200 (282)
T ss_pred ---hcccccceeeeHHHHHHHhCHHHHHHHHHHHhCCCCceEeeehhhhH
Confidence 12456999999999999999999999999999999999999988765
No 16
>PF13847 Methyltransf_31: Methyltransferase domain; PDB: 3T0I_B 3SVZ_B 3SXJ_A 3F4K_A 3GU3_B 2GH1_A 1R8Y_E 1R8X_B 2B3T_A 1T43_A ....
Probab=99.71 E-value=3.6e-16 Score=118.36 Aligned_cols=109 Identities=22% Similarity=0.285 Sum_probs=91.6
Q ss_pred CCCeEEEeCCCccHHHHHHH-Hh--CCEEEEecc-hhhHHHHHHHHHHhhccccccCCCCCCCCCceEEEEeecCCCccc
Q 027530 64 KGKRVIELGAGCGVAGFGMA-LL--GCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSGNLLGSIQAVELDWGNEDHI 139 (222)
Q Consensus 64 ~~~~vLelGcG~G~~~i~la-~~--g~~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~ 139 (222)
++.+|||||||+|..+..++ +. +++|+++|+ +++++.++++++.++. .++++.+.|+.+....
T Consensus 3 ~~~~iLDlGcG~G~~~~~l~~~~~~~~~i~gvD~s~~~i~~a~~~~~~~~~-------------~ni~~~~~d~~~l~~~ 69 (152)
T PF13847_consen 3 SNKKILDLGCGTGRLLIQLAKELNPGAKIIGVDISEEMIEYAKKRAKELGL-------------DNIEFIQGDIEDLPQE 69 (152)
T ss_dssp TTSEEEEET-TTSHHHHHHHHHSTTTSEEEEEESSHHHHHHHHHHHHHTTS-------------TTEEEEESBTTCGCGC
T ss_pred CCCEEEEecCcCcHHHHHHHHhcCCCCEEEEEECcHHHHHHhhcccccccc-------------cccceEEeehhccccc
Confidence 56899999999999999999 44 568999999 6699999999988874 3899999888763321
Q ss_pred cccCCCccEEEEeccccCccCHHHHHHHHHHhcCCCeEEEEEEEEcCh
Q 027530 140 KAVAPPFDYIIGTDVVYAEHLLEPLLQTIFALSGPKTTILLGYEIRST 187 (222)
Q Consensus 140 ~~~~~~fD~Ii~~d~~y~~~~~~~ll~~~~~~l~~~g~~~l~~~~r~~ 187 (222)
. .++||+|+++.++++......+++.+.++|+++|.+++.......
T Consensus 70 -~-~~~~D~I~~~~~l~~~~~~~~~l~~~~~~lk~~G~~i~~~~~~~~ 115 (152)
T PF13847_consen 70 -L-EEKFDIIISNGVLHHFPDPEKVLKNIIRLLKPGGILIISDPNHND 115 (152)
T ss_dssp -S-STTEEEEEEESTGGGTSHHHHHHHHHHHHEEEEEEEEEEEEEHSH
T ss_pred -c-CCCeeEEEEcCchhhccCHHHHHHHHHHHcCCCcEEEEEECChHH
Confidence 1 279999999999999888999999999999999999998887444
No 17
>PLN02396 hexaprenyldihydroxybenzoate methyltransferase
Probab=99.70 E-value=2.1e-16 Score=133.06 Aligned_cols=109 Identities=17% Similarity=0.270 Sum_probs=90.3
Q ss_pred CCCCeEEEeCCCccHHHHHHHHhCCEEEEecc-hhhHHHHHHHHHHhhccccccCCCCCCCCCceEEEEeecCCCccccc
Q 027530 63 LKGKRVIELGAGCGVAGFGMALLGCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSGNLLGSIQAVELDWGNEDHIKA 141 (222)
Q Consensus 63 ~~~~~vLelGcG~G~~~i~la~~g~~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~ 141 (222)
.++.+|||||||+|.++..+++.|++|+++|. +++++.+++++..+.. ..++.+...+. ...+.
T Consensus 130 ~~g~~ILDIGCG~G~~s~~La~~g~~V~GID~s~~~i~~Ar~~~~~~~~------------~~~i~~~~~da---e~l~~ 194 (322)
T PLN02396 130 FEGLKFIDIGCGGGLLSEPLARMGATVTGVDAVDKNVKIARLHADMDPV------------TSTIEYLCTTA---EKLAD 194 (322)
T ss_pred CCCCEEEEeeCCCCHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHhcCc------------ccceeEEecCH---HHhhh
Confidence 56789999999999999999999999999998 6799999988765432 23677776443 33333
Q ss_pred cCCCccEEEEeccccCccCHHHHHHHHHHhcCCCeEEEEEEEEcC
Q 027530 142 VAPPFDYIIGTDVVYAEHLLEPLLQTIFALSGPKTTILLGYEIRS 186 (222)
Q Consensus 142 ~~~~fD~Ii~~d~~y~~~~~~~ll~~~~~~l~~~g~~~l~~~~r~ 186 (222)
.+++||+|++.++++|..+...+++.+.++|+|||.++++...+.
T Consensus 195 ~~~~FD~Vi~~~vLeHv~d~~~~L~~l~r~LkPGG~liist~nr~ 239 (322)
T PLN02396 195 EGRKFDAVLSLEVIEHVANPAEFCKSLSALTIPNGATVLSTINRT 239 (322)
T ss_pred ccCCCCEEEEhhHHHhcCCHHHHHHHHHHHcCCCcEEEEEECCcC
Confidence 457899999999999999999999999999999999999876543
No 18
>PRK14967 putative methyltransferase; Provisional
Probab=99.69 E-value=3.3e-15 Score=120.20 Aligned_cols=154 Identities=19% Similarity=0.245 Sum_probs=107.9
Q ss_pred EEEeeCCCCccccccccchHHHHHHHHhhhccCCCCCCCCCCCCeEEEeCCCccHHHHHHHHhCC-EEEEecc-hhhHHH
Q 027530 23 LQFSQDPNSKHLGTTVWDASVVFVKYLEKNCRKGRFCPSKLKGKRVIELGAGCGVAGFGMALLGC-NVITTDQ-IEVLPL 100 (222)
Q Consensus 23 ~~i~q~~~~~~~g~~~W~~~~~la~~l~~~~~~~~~~~~~~~~~~vLelGcG~G~~~i~la~~g~-~v~~~D~-~~~l~~ 100 (222)
+.+.+.++.+..... +.++++++... ...++.+|||+|||+|.+++.+++.++ +|+++|+ +++++.
T Consensus 7 ~~~~~~~g~~~p~~d----s~~l~~~l~~~--------~~~~~~~vLDlGcG~G~~~~~la~~~~~~v~~vD~s~~~l~~ 74 (223)
T PRK14967 7 DALLRAPGVYRPQED----TQLLADALAAE--------GLGPGRRVLDLCTGSGALAVAAAAAGAGSVTAVDISRRAVRS 74 (223)
T ss_pred ceeecCCCCcCCCCc----HHHHHHHHHhc--------ccCCCCeEEEecCCHHHHHHHHHHcCCCeEEEEECCHHHHHH
Confidence 345555554444433 67788887643 234568999999999999999998876 8999999 569999
Q ss_pred HHHHHHHhhccccccCCCCCCCCCceEEEEeecCCCccccccCCCccEEEEeccccCccC--------------------
Q 027530 101 LKRNVEWNTSRISQMNPGSGNLLGSIQAVELDWGNEDHIKAVAPPFDYIIGTDVVYAEHL-------------------- 160 (222)
Q Consensus 101 ~~~n~~~n~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~fD~Ii~~d~~y~~~~-------------------- 160 (222)
+++|+..++. ++.+...|+.+. ..+.+||+|+++++++....
T Consensus 75 a~~n~~~~~~--------------~~~~~~~d~~~~----~~~~~fD~Vi~npPy~~~~~~~~~~~~~~~~~~~~~~~~~ 136 (223)
T PRK14967 75 ARLNALLAGV--------------DVDVRRGDWARA----VEFRPFDVVVSNPPYVPAPPDAPPSRGPARAWDAGPDGRA 136 (223)
T ss_pred HHHHHHHhCC--------------eeEEEECchhhh----ccCCCeeEEEECCCCCCCCcccccccChhHhhhCCCcHHH
Confidence 9999987763 456676666432 12468999999987653211
Q ss_pred -HHHHHHHHHHhcCCCeEEEEEEEEcChhHHHHHHHHHh-cCCeEEEecC
Q 027530 161 -LEPLLQTIFALSGPKTTILLGYEIRSTSVHEQMLQMWK-SNFNVKLVPK 208 (222)
Q Consensus 161 -~~~ll~~~~~~l~~~g~~~l~~~~r~~~~~~~f~~~~~-~~~~v~~v~~ 208 (222)
+..+++.+.++|+|||++++....... ...+++.++ .+|.++.+..
T Consensus 137 ~~~~~l~~a~~~Lk~gG~l~~~~~~~~~--~~~~~~~l~~~g~~~~~~~~ 184 (223)
T PRK14967 137 VLDRLCDAAPALLAPGGSLLLVQSELSG--VERTLTRLSEAGLDAEVVAS 184 (223)
T ss_pred HHHHHHHHHHHhcCCCcEEEEEEecccC--HHHHHHHHHHCCCCeEEEEe
Confidence 455778888999999999987665432 245555553 4676655544
No 19
>PRK00517 prmA ribosomal protein L11 methyltransferase; Reviewed
Probab=99.67 E-value=2.9e-15 Score=122.50 Aligned_cols=151 Identities=22% Similarity=0.351 Sum_probs=108.8
Q ss_pred CeEEEEeeCCCCccccccccchHHHHHHHHhhhccCCCCCCCCCCCCeEEEeCCCccHHHHHHHHhCCE-EEEecc-hhh
Q 027530 20 GHQLQFSQDPNSKHLGTTVWDASVVFVKYLEKNCRKGRFCPSKLKGKRVIELGAGCGVAGFGMALLGCN-VITTDQ-IEV 97 (222)
Q Consensus 20 ~~~~~i~q~~~~~~~g~~~W~~~~~la~~l~~~~~~~~~~~~~~~~~~vLelGcG~G~~~i~la~~g~~-v~~~D~-~~~ 97 (222)
...+.+..+| +..+|.-.++.+..+.+++... ..++++|||+|||+|.+++.+++.|+. |+++|+ +.+
T Consensus 85 ~~~~~i~i~p-~~afgtg~h~tt~~~l~~l~~~---------~~~~~~VLDiGcGsG~l~i~~~~~g~~~v~giDis~~~ 154 (250)
T PRK00517 85 PDEINIELDP-GMAFGTGTHPTTRLCLEALEKL---------VLPGKTVLDVGCGSGILAIAAAKLGAKKVLAVDIDPQA 154 (250)
T ss_pred CCeEEEEECC-CCccCCCCCHHHHHHHHHHHhh---------cCCCCEEEEeCCcHHHHHHHHHHcCCCeEEEEECCHHH
Confidence 4556677777 3345555578888888888753 346789999999999999999998875 999999 569
Q ss_pred HHHHHHHHHHhhccccccCCCCCCCCCceEEEEeecCCCccccccCCCccEEEEeccccCccCHHHHHHHHHHhcCCCeE
Q 027530 98 LPLLKRNVEWNTSRISQMNPGSGNLLGSIQAVELDWGNEDHIKAVAPPFDYIIGTDVVYAEHLLEPLLQTIFALSGPKTT 177 (222)
Q Consensus 98 l~~~~~n~~~n~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~fD~Ii~~d~~y~~~~~~~ll~~~~~~l~~~g~ 177 (222)
++.+++|++.|++. ..+.+.. + +.+||+|+++-. .+.+..+++.+.++|+|||.
T Consensus 155 l~~A~~n~~~~~~~------------~~~~~~~---~--------~~~fD~Vvani~---~~~~~~l~~~~~~~LkpgG~ 208 (250)
T PRK00517 155 VEAARENAELNGVE------------LNVYLPQ---G--------DLKADVIVANIL---ANPLLELAPDLARLLKPGGR 208 (250)
T ss_pred HHHHHHHHHHcCCC------------ceEEEcc---C--------CCCcCEEEEcCc---HHHHHHHHHHHHHhcCCCcE
Confidence 99999999988742 1232221 1 127999998732 34456788999999999999
Q ss_pred EEEEEEEcChhHHHHHHHHHh-cCCeEEEecC
Q 027530 178 ILLGYEIRSTSVHEQMLQMWK-SNFNVKLVPK 208 (222)
Q Consensus 178 ~~l~~~~r~~~~~~~f~~~~~-~~~~v~~v~~ 208 (222)
++++...... ...+.+.+. .+|.+..+..
T Consensus 209 lilsgi~~~~--~~~v~~~l~~~Gf~~~~~~~ 238 (250)
T PRK00517 209 LILSGILEEQ--ADEVLEAYEEAGFTLDEVLE 238 (250)
T ss_pred EEEEECcHhh--HHHHHHHHHHCCCEEEEEEE
Confidence 9998765433 245555554 5787765433
No 20
>TIGR00138 gidB 16S rRNA methyltransferase GidB. GidB (glucose-inhibited division protein B) appears to be present and in a single copy in nearly all complete eubacterial genomes. It is missing only from some obligate intracellular species of various lineages (Chlamydiae, Ehrlichia, Wolbachia, Anaplasma, Buchnera, etc.). GidB shows a methytransferase fold in its the crystal structure, and acts as a 7-methylguanosine (m(7)G) methyltransferase, apparently specific to 16S rRNA.
Probab=99.66 E-value=3.3e-15 Score=116.29 Aligned_cols=129 Identities=18% Similarity=0.165 Sum_probs=94.8
Q ss_pred CCCCeEEEeCCCccHHHHHHHHhC--CEEEEecc-hhhHHHHHHHHHHhhccccccCCCCCCCCCceEEEEeecCCCccc
Q 027530 63 LKGKRVIELGAGCGVAGFGMALLG--CNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSGNLLGSIQAVELDWGNEDHI 139 (222)
Q Consensus 63 ~~~~~vLelGcG~G~~~i~la~~g--~~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~ 139 (222)
.++++|||+|||+|..++.++..+ ++|+++|. +++++.+++|++.++. .++++.+.|+.+..
T Consensus 41 ~~~~~vLDiGcGtG~~s~~la~~~~~~~V~~iD~s~~~~~~a~~~~~~~~~-------------~~i~~i~~d~~~~~-- 105 (181)
T TIGR00138 41 LDGKKVIDIGSGAGFPGIPLAIARPELKLTLLESNHKKVAFLREVKAELGL-------------NNVEIVNGRAEDFQ-- 105 (181)
T ss_pred cCCCeEEEecCCCCccHHHHHHHCCCCeEEEEeCcHHHHHHHHHHHHHhCC-------------CCeEEEecchhhcc--
Confidence 357899999999999999988765 47999999 5699999999988763 35888887765531
Q ss_pred cccCCCccEEEEeccccCccCHHHHHHHHHHhcCCCeEEEEEEEEcChhHHHHHHHHH-hcCCeEEEecCCCCC
Q 027530 140 KAVAPPFDYIIGTDVVYAEHLLEPLLQTIFALSGPKTTILLGYEIRSTSVHEQMLQMW-KSNFNVKLVPKAKES 212 (222)
Q Consensus 140 ~~~~~~fD~Ii~~d~~y~~~~~~~ll~~~~~~l~~~g~~~l~~~~r~~~~~~~f~~~~-~~~~~v~~v~~~~~~ 212 (222)
..++||+|++.. ...+..+++.+.++|+|||.+++..............+.+ ..+++....+.-.++
T Consensus 106 --~~~~fD~I~s~~----~~~~~~~~~~~~~~LkpgG~lvi~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~ 173 (181)
T TIGR00138 106 --HEEQFDVITSRA----LASLNVLLELTLNLLKVGGYFLAYKGKKYLDEIEEAKRKCQVLGVEPLEVPPLTGP 173 (181)
T ss_pred --ccCCccEEEehh----hhCHHHHHHHHHHhcCCCCEEEEEcCCCcHHHHHHHHHhhhhcCceEeeccccCCC
Confidence 256899999865 2456778899999999999998876443333233333333 247777766665554
No 21
>PRK11207 tellurite resistance protein TehB; Provisional
Probab=99.64 E-value=3.9e-15 Score=117.56 Aligned_cols=101 Identities=20% Similarity=0.258 Sum_probs=81.5
Q ss_pred CCCeEEEeCCCccHHHHHHHHhCCEEEEecc-hhhHHHHHHHHHHhhccccccCCCCCCCCCceEEEEeecCCCcccccc
Q 027530 64 KGKRVIELGAGCGVAGFGMALLGCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSGNLLGSIQAVELDWGNEDHIKAV 142 (222)
Q Consensus 64 ~~~~vLelGcG~G~~~i~la~~g~~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~ 142 (222)
++.+|||+|||+|..++.+++.|.+|+++|. +++++.++++++.+++ .++++...|+.+. . .
T Consensus 30 ~~~~vLDiGcG~G~~a~~La~~g~~V~gvD~S~~~i~~a~~~~~~~~~-------------~~v~~~~~d~~~~---~-~ 92 (197)
T PRK11207 30 KPGKTLDLGCGNGRNSLYLAANGFDVTAWDKNPMSIANLERIKAAENL-------------DNLHTAVVDLNNL---T-F 92 (197)
T ss_pred CCCcEEEECCCCCHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHHcCC-------------CcceEEecChhhC---C-c
Confidence 5679999999999999999999999999999 5699999999887653 2466666555432 1 2
Q ss_pred CCCccEEEEeccccCcc--CHHHHHHHHHHhcCCCeEEEEE
Q 027530 143 APPFDYIIGTDVVYAEH--LLEPLLQTIFALSGPKTTILLG 181 (222)
Q Consensus 143 ~~~fD~Ii~~d~~y~~~--~~~~ll~~~~~~l~~~g~~~l~ 181 (222)
.++||+|+++.++++.+ ....+++.+.++|+|||.+++.
T Consensus 93 ~~~fD~I~~~~~~~~~~~~~~~~~l~~i~~~LkpgG~~~~~ 133 (197)
T PRK11207 93 DGEYDFILSTVVLMFLEAKTIPGLIANMQRCTKPGGYNLIV 133 (197)
T ss_pred CCCcCEEEEecchhhCCHHHHHHHHHHHHHHcCCCcEEEEE
Confidence 45799999999987643 5678999999999999996543
No 22
>PRK11036 putative S-adenosyl-L-methionine-dependent methyltransferase; Provisional
Probab=99.63 E-value=2.8e-15 Score=122.96 Aligned_cols=108 Identities=22% Similarity=0.264 Sum_probs=89.5
Q ss_pred CCCeEEEeCCCccHHHHHHHHhCCEEEEecc-hhhHHHHHHHHHHhhccccccCCCCCCCCCceEEEEeecCCCcccccc
Q 027530 64 KGKRVIELGAGCGVAGFGMALLGCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSGNLLGSIQAVELDWGNEDHIKAV 142 (222)
Q Consensus 64 ~~~~vLelGcG~G~~~i~la~~g~~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~ 142 (222)
++.+|||+|||+|..+..+++.|.+|+++|. +++++.+++++...+. ..++++...+..+.. ...
T Consensus 44 ~~~~vLDiGcG~G~~a~~la~~g~~v~~vD~s~~~l~~a~~~~~~~g~------------~~~v~~~~~d~~~l~--~~~ 109 (255)
T PRK11036 44 RPLRVLDAGGGEGQTAIKLAELGHQVILCDLSAEMIQRAKQAAEAKGV------------SDNMQFIHCAAQDIA--QHL 109 (255)
T ss_pred CCCEEEEeCCCchHHHHHHHHcCCEEEEEECCHHHHHHHHHHHHhcCC------------ccceEEEEcCHHHHh--hhc
Confidence 4579999999999999999999999999999 6799999999887653 246777776654332 123
Q ss_pred CCCccEEEEeccccCccCHHHHHHHHHHhcCCCeEEEEEEEEc
Q 027530 143 APPFDYIIGTDVVYAEHLLEPLLQTIFALSGPKTTILLGYEIR 185 (222)
Q Consensus 143 ~~~fD~Ii~~d~~y~~~~~~~ll~~~~~~l~~~g~~~l~~~~r 185 (222)
.++||+|++..++++......+++.+.++|+|||.+++.....
T Consensus 110 ~~~fD~V~~~~vl~~~~~~~~~l~~~~~~LkpgG~l~i~~~n~ 152 (255)
T PRK11036 110 ETPVDLILFHAVLEWVADPKSVLQTLWSVLRPGGALSLMFYNA 152 (255)
T ss_pred CCCCCEEEehhHHHhhCCHHHHHHHHHHHcCCCeEEEEEEECc
Confidence 5789999999999988888899999999999999998875443
No 23
>PLN02244 tocopherol O-methyltransferase
Probab=99.63 E-value=8.9e-15 Score=124.67 Aligned_cols=105 Identities=15% Similarity=0.073 Sum_probs=88.8
Q ss_pred CCCCeEEEeCCCccHHHHHHHHh-CCEEEEecc-hhhHHHHHHHHHHhhccccccCCCCCCCCCceEEEEeecCCCcccc
Q 027530 63 LKGKRVIELGAGCGVAGFGMALL-GCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSGNLLGSIQAVELDWGNEDHIK 140 (222)
Q Consensus 63 ~~~~~vLelGcG~G~~~i~la~~-g~~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~ 140 (222)
.++++|||||||+|..+..+++. +++|+++|+ +.+++.++++++.++. ..++++...|..+ .+
T Consensus 117 ~~~~~VLDiGCG~G~~~~~La~~~g~~v~gvD~s~~~i~~a~~~~~~~g~------------~~~v~~~~~D~~~---~~ 181 (340)
T PLN02244 117 KRPKRIVDVGCGIGGSSRYLARKYGANVKGITLSPVQAARANALAAAQGL------------SDKVSFQVADALN---QP 181 (340)
T ss_pred CCCCeEEEecCCCCHHHHHHHHhcCCEEEEEECCHHHHHHHHHHHHhcCC------------CCceEEEEcCccc---CC
Confidence 46789999999999999999986 789999999 5699999998887763 2468888766543 33
Q ss_pred ccCCCccEEEEeccccCccCHHHHHHHHHHhcCCCeEEEEEE
Q 027530 141 AVAPPFDYIIGTDVVYAEHLLEPLLQTIFALSGPKTTILLGY 182 (222)
Q Consensus 141 ~~~~~fD~Ii~~d~~y~~~~~~~ll~~~~~~l~~~g~~~l~~ 182 (222)
..+++||+|++..++++..+...+++.+.++|+|||.++++.
T Consensus 182 ~~~~~FD~V~s~~~~~h~~d~~~~l~e~~rvLkpGG~lvi~~ 223 (340)
T PLN02244 182 FEDGQFDLVWSMESGEHMPDKRKFVQELARVAAPGGRIIIVT 223 (340)
T ss_pred CCCCCccEEEECCchhccCCHHHHHHHHHHHcCCCcEEEEEE
Confidence 456799999999999998889999999999999999999875
No 24
>PF08241 Methyltransf_11: Methyltransferase domain; InterPro: IPR013216 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (SAM) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalyzed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. This entry represents a methyltransferase domain found in a large variety of SAM-dependent methyltransferases including, but not limited to: Arsenite methyltransferase (2.1.1.137 from EC) which converts arsenical compounds to their methylated forms [] Biotin synthesis protein bioC, which is involved in the early stages of biotin biosyntheis [] Arginine N-methyltransferase 1, an arginine-methylating enzyme which acts on residues present in a glycine and argine-rich domain and can methylate histones [] Hexaprenyldihydroxybenzoate methyltransferase (2.1.1.114 from EC), a mitochodrial enzyme involved in ubiquinone biosynthesis [] A probable cobalt-precorrin-6Y C(15)-methyltransferase thought to be involved in adenosylcobalamin biosynthesis [] Sterol 24-C-methyltransferase (2.1.1.41 from EC), shown to participate in ergosterol biosynthesis [] 3-demethylubiquinone-9 3-methyltransferase (2.1.1.64 from EC) involved in ubiquinone biosynthesis [] Structural studies show that this domain forms the Rossman-like alpha-beta fold typical of SAM-dependent methyltransferases [, , ]. ; GO: 0008168 methyltransferase activity, 0008152 metabolic process; PDB: 3CGG_B 3CCF_B 3BKW_B 2PXX_A 3I9F_A 2YQZ_B 2YR0_A 3BUS_A 3EGE_A 3G5L_B ....
Probab=99.62 E-value=2.6e-15 Score=103.77 Aligned_cols=93 Identities=18% Similarity=0.289 Sum_probs=76.3
Q ss_pred EEeCCCccHHHHHHHHh-CCEEEEecc-hhhHHHHHHHHHHhhccccccCCCCCCCCCceEEEEeecCCCccccccCCCc
Q 027530 69 IELGAGCGVAGFGMALL-GCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSGNLLGSIQAVELDWGNEDHIKAVAPPF 146 (222)
Q Consensus 69 LelGcG~G~~~i~la~~-g~~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~f 146 (222)
||+|||+|..+..+++. +.+|+++|. +++++.++++.... .+.+...+. ...+..+++|
T Consensus 1 LdiG~G~G~~~~~l~~~~~~~v~~~D~~~~~~~~~~~~~~~~----------------~~~~~~~d~---~~l~~~~~sf 61 (95)
T PF08241_consen 1 LDIGCGTGRFAAALAKRGGASVTGIDISEEMLEQARKRLKNE----------------GVSFRQGDA---EDLPFPDNSF 61 (95)
T ss_dssp EEET-TTSHHHHHHHHTTTCEEEEEES-HHHHHHHHHHTTTS----------------TEEEEESBT---TSSSS-TT-E
T ss_pred CEecCcCCHHHHHHHhccCCEEEEEeCCHHHHHHHHhccccc----------------CchheeehH---HhCccccccc
Confidence 89999999999999999 779999999 56899988877643 344666554 3445568899
Q ss_pred cEEEEeccccCccCHHHHHHHHHHhcCCCeEEEE
Q 027530 147 DYIIGTDVVYAEHLLEPLLQTIFALSGPKTTILL 180 (222)
Q Consensus 147 D~Ii~~d~~y~~~~~~~ll~~~~~~l~~~g~~~l 180 (222)
|+|+++.++++.+....+++.+.++|||||.+++
T Consensus 62 D~v~~~~~~~~~~~~~~~l~e~~rvLk~gG~l~~ 95 (95)
T PF08241_consen 62 DVVFSNSVLHHLEDPEAALREIYRVLKPGGRLVI 95 (95)
T ss_dssp EEEEEESHGGGSSHHHHHHHHHHHHEEEEEEEEE
T ss_pred cccccccceeeccCHHHHHHHHHHHcCcCeEEeC
Confidence 9999999999988999999999999999999875
No 25
>COG2226 UbiE Methylase involved in ubiquinone/menaquinone biosynthesis [Coenzyme metabolism]
Probab=99.62 E-value=1e-14 Score=117.12 Aligned_cols=106 Identities=14% Similarity=0.203 Sum_probs=91.4
Q ss_pred CCCeEEEeCCCccHHHHHHHHhC--CEEEEecc-hhhHHHHHHHHHHhhccccccCCCCCCCCCceEEEEeecCCCcccc
Q 027530 64 KGKRVIELGAGCGVAGFGMALLG--CNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSGNLLGSIQAVELDWGNEDHIK 140 (222)
Q Consensus 64 ~~~~vLelGcG~G~~~i~la~~g--~~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~ 140 (222)
+|.+|||+|||||-.++.+++.. ++|+++|+ +.|++.+++.+..-+. ..++++. ++.+.++
T Consensus 51 ~g~~vLDva~GTGd~a~~~~k~~g~g~v~~~D~s~~ML~~a~~k~~~~~~-------------~~i~fv~---~dAe~LP 114 (238)
T COG2226 51 PGDKVLDVACGTGDMALLLAKSVGTGEVVGLDISESMLEVAREKLKKKGV-------------QNVEFVV---GDAENLP 114 (238)
T ss_pred CCCEEEEecCCccHHHHHHHHhcCCceEEEEECCHHHHHHHHHHhhccCc-------------cceEEEE---echhhCC
Confidence 78999999999999999999876 58999999 5699999998875442 1377777 6667788
Q ss_pred ccCCCccEEEEeccccCccCHHHHHHHHHHhcCCCeEEEEEEEEc
Q 027530 141 AVAPPFDYIIGTDVVYAEHLLEPLLQTIFALSGPKTTILLGYEIR 185 (222)
Q Consensus 141 ~~~~~fD~Ii~~d~~y~~~~~~~ll~~~~~~l~~~g~~~l~~~~r 185 (222)
+++++||+|.++-.+.+..+++..|+.+.|+|||||++++....+
T Consensus 115 f~D~sFD~vt~~fglrnv~d~~~aL~E~~RVlKpgG~~~vle~~~ 159 (238)
T COG2226 115 FPDNSFDAVTISFGLRNVTDIDKALKEMYRVLKPGGRLLVLEFSK 159 (238)
T ss_pred CCCCccCEEEeeehhhcCCCHHHHHHHHHHhhcCCeEEEEEEcCC
Confidence 889999999999999999999999999999999999887765443
No 26
>PF01209 Ubie_methyltran: ubiE/COQ5 methyltransferase family; InterPro: IPR004033 A number of methyltransferases have been shown to share regions of similarities []. Apart from the ubiquinone/menaquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the ubiE gene of Escherichia coli), the ubiquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the COQ5 gene of Saccharomyces cerevisiae) and the menaquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the MENH gene of Bacillus subtilis), this family also includes methyltransferases involved in biotin and sterol biosynthesis and in phosphatidylethanolamine methylation.; GO: 0008168 methyltransferase activity; PDB: 1VL5_C.
Probab=99.61 E-value=1.6e-14 Score=116.68 Aligned_cols=109 Identities=17% Similarity=0.198 Sum_probs=81.8
Q ss_pred CCCCeEEEeCCCccHHHHHHHHh-C--CEEEEecc-hhhHHHHHHHHHHhhccccccCCCCCCCCCceEEEEeecCCCcc
Q 027530 63 LKGKRVIELGAGCGVAGFGMALL-G--CNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSGNLLGSIQAVELDWGNEDH 138 (222)
Q Consensus 63 ~~~~~vLelGcG~G~~~i~la~~-g--~~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~ 138 (222)
.+|.+|||+|||||.++..+++. + .+|+++|+ ++|++.+++++...+. .++++.+.| .+.
T Consensus 46 ~~g~~vLDv~~GtG~~~~~l~~~~~~~~~v~~vD~s~~ML~~a~~k~~~~~~-------------~~i~~v~~d---a~~ 109 (233)
T PF01209_consen 46 RPGDRVLDVACGTGDVTRELARRVGPNGKVVGVDISPGMLEVARKKLKREGL-------------QNIEFVQGD---AED 109 (233)
T ss_dssp -S--EEEEET-TTSHHHHHHGGGSS---EEEEEES-HHHHHHHHHHHHHTT---------------SEEEEE-B---TTB
T ss_pred CCCCEEEEeCCChHHHHHHHHHHCCCccEEEEecCCHHHHHHHHHHHHhhCC-------------CCeeEEEcC---HHH
Confidence 36789999999999999999875 3 47999999 5699999999987653 378888844 455
Q ss_pred ccccCCCccEEEEeccccCccCHHHHHHHHHHhcCCCeEEEEEEEEcCh
Q 027530 139 IKAVAPPFDYIIGTDVVYAEHLLEPLLQTIFALSGPKTTILLGYEIRST 187 (222)
Q Consensus 139 ~~~~~~~fD~Ii~~d~~y~~~~~~~ll~~~~~~l~~~g~~~l~~~~r~~ 187 (222)
++..+++||+|+++-.+.+..+....++.+.++|||||++.+....+..
T Consensus 110 lp~~d~sfD~v~~~fglrn~~d~~~~l~E~~RVLkPGG~l~ile~~~p~ 158 (233)
T PF01209_consen 110 LPFPDNSFDAVTCSFGLRNFPDRERALREMYRVLKPGGRLVILEFSKPR 158 (233)
T ss_dssp --S-TT-EEEEEEES-GGG-SSHHHHHHHHHHHEEEEEEEEEEEEEB-S
T ss_pred hcCCCCceeEEEHHhhHHhhCCHHHHHHHHHHHcCCCeEEEEeeccCCC
Confidence 6667899999999999988889999999999999999999887765544
No 27
>TIGR00477 tehB tellurite resistance protein TehB. Part of a tellurite-reducing operon tehA and tehB
Probab=99.61 E-value=1.2e-14 Score=114.66 Aligned_cols=100 Identities=16% Similarity=0.211 Sum_probs=78.7
Q ss_pred CCCeEEEeCCCccHHHHHHHHhCCEEEEecc-hhhHHHHHHHHHHhhccccccCCCCCCCCCceEEEEeecCCCcccccc
Q 027530 64 KGKRVIELGAGCGVAGFGMALLGCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSGNLLGSIQAVELDWGNEDHIKAV 142 (222)
Q Consensus 64 ~~~~vLelGcG~G~~~i~la~~g~~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~ 142 (222)
++.+|||+|||+|..++.+++.|.+|+++|+ +.+++.++++++.+++ .+.+...|.... + .
T Consensus 30 ~~~~vLDiGcG~G~~a~~la~~g~~V~~iD~s~~~l~~a~~~~~~~~~--------------~v~~~~~d~~~~---~-~ 91 (195)
T TIGR00477 30 APCKTLDLGCGQGRNSLYLSLAGYDVRAWDHNPASIASVLDMKARENL--------------PLRTDAYDINAA---A-L 91 (195)
T ss_pred CCCcEEEeCCCCCHHHHHHHHCCCeEEEEECCHHHHHHHHHHHHHhCC--------------CceeEeccchhc---c-c
Confidence 4579999999999999999999999999999 5699999998876653 244444443221 1 2
Q ss_pred CCCccEEEEeccccCc--cCHHHHHHHHHHhcCCCeEEEEE
Q 027530 143 APPFDYIIGTDVVYAE--HLLEPLLQTIFALSGPKTTILLG 181 (222)
Q Consensus 143 ~~~fD~Ii~~d~~y~~--~~~~~ll~~~~~~l~~~g~~~l~ 181 (222)
.++||+|+++.++++. .....+++.+.++|+|||.+++.
T Consensus 92 ~~~fD~I~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~lli~ 132 (195)
T TIGR00477 92 NEDYDFIFSTVVFMFLQAGRVPEIIANMQAHTRPGGYNLIV 132 (195)
T ss_pred cCCCCEEEEecccccCCHHHHHHHHHHHHHHhCCCcEEEEE
Confidence 4579999999988764 45678999999999999986554
No 28
>PRK14968 putative methyltransferase; Provisional
Probab=99.61 E-value=4.1e-14 Score=110.37 Aligned_cols=142 Identities=21% Similarity=0.268 Sum_probs=101.0
Q ss_pred cchHHHHHHHHhhhccCCCCCCCCCCCCeEEEeCCCccHHHHHHHHhCCEEEEecc-hhhHHHHHHHHHHhhccccccCC
Q 027530 39 WDASVVFVKYLEKNCRKGRFCPSKLKGKRVIELGAGCGVAGFGMALLGCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNP 117 (222)
Q Consensus 39 W~~~~~la~~l~~~~~~~~~~~~~~~~~~vLelGcG~G~~~i~la~~g~~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~ 117 (222)
++.+.+|++++.. .++++|||+|||+|..++.++..+.+|+++|. +++++.+++|+..++..
T Consensus 9 ~~~~~~l~~~~~~-----------~~~~~vLd~G~G~G~~~~~l~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~------ 71 (188)
T PRK14968 9 AEDSFLLAENAVD-----------KKGDRVLEVGTGSGIVAIVAAKNGKKVVGVDINPYAVECAKCNAKLNNIR------ 71 (188)
T ss_pred chhHHHHHHhhhc-----------cCCCEEEEEccccCHHHHHHHhhcceEEEEECCHHHHHHHHHHHHHcCCC------
Confidence 3446677777642 36789999999999999999988889999999 66999999999887642
Q ss_pred CCCCCCCceEEEEeecCCCccccccCCCccEEEEeccccCc---------------------cCHHHHHHHHHHhcCCCe
Q 027530 118 GSGNLLGSIQAVELDWGNEDHIKAVAPPFDYIIGTDVVYAE---------------------HLLEPLLQTIFALSGPKT 176 (222)
Q Consensus 118 ~~~~~~~~v~~~~~d~~~~~~~~~~~~~fD~Ii~~d~~y~~---------------------~~~~~ll~~~~~~l~~~g 176 (222)
...+.+...|+.+.. ...+||+|+++++++.. .....+++.+.++|+|+|
T Consensus 72 -----~~~~~~~~~d~~~~~----~~~~~d~vi~n~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~Lk~gG 142 (188)
T PRK14968 72 -----NNGVEVIRSDLFEPF----RGDKFDVILFNPPYLPTEEEEEWDDWLNYALSGGKDGREVIDRFLDEVGRYLKPGG 142 (188)
T ss_pred -----CcceEEEeccccccc----cccCceEEEECCCcCCCCchhhhhhhhhhhhccCcChHHHHHHHHHHHHHhcCCCe
Confidence 112667776664421 23489999998876541 124568899999999999
Q ss_pred EEEEEEEEcChhHHHHHHHHH-hcCCeEEEecC
Q 027530 177 TILLGYEIRSTSVHEQMLQMW-KSNFNVKLVPK 208 (222)
Q Consensus 177 ~~~l~~~~r~~~~~~~f~~~~-~~~~~v~~v~~ 208 (222)
.+++....... .+.+.+.+ +.+|.+..+..
T Consensus 143 ~~~~~~~~~~~--~~~l~~~~~~~g~~~~~~~~ 173 (188)
T PRK14968 143 RILLLQSSLTG--EDEVLEYLEKLGFEAEVVAE 173 (188)
T ss_pred EEEEEEcccCC--HHHHHHHHHHCCCeeeeeee
Confidence 98877653322 23444444 34787665543
No 29
>PRK00107 gidB 16S rRNA methyltransferase GidB; Reviewed
Probab=99.60 E-value=4.1e-14 Score=110.56 Aligned_cols=122 Identities=18% Similarity=0.203 Sum_probs=90.8
Q ss_pred CCCeEEEeCCCccHHHHHHHHh--CCEEEEecc-hhhHHHHHHHHHHhhccccccCCCCCCCCCceEEEEeecCCCcccc
Q 027530 64 KGKRVIELGAGCGVAGFGMALL--GCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSGNLLGSIQAVELDWGNEDHIK 140 (222)
Q Consensus 64 ~~~~vLelGcG~G~~~i~la~~--g~~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~ 140 (222)
++.+|||+|||+|..++.+++. +++|+++|. +++++.+++|++.++.. ++++...+..+. .
T Consensus 45 ~g~~VLDiGcGtG~~al~la~~~~~~~V~giD~s~~~l~~A~~~~~~~~l~-------------~i~~~~~d~~~~---~ 108 (187)
T PRK00107 45 GGERVLDVGSGAGFPGIPLAIARPELKVTLVDSLGKKIAFLREVAAELGLK-------------NVTVVHGRAEEF---G 108 (187)
T ss_pred CCCeEEEEcCCCCHHHHHHHHHCCCCeEEEEeCcHHHHHHHHHHHHHcCCC-------------CEEEEeccHhhC---C
Confidence 3789999999999999998864 468999999 56999999999988742 488888665543 2
Q ss_pred ccCCCccEEEEeccccCccCHHHHHHHHHHhcCCCeEEEEEEEEcChhHHHHHHHHH-hcCCeEEEecCC
Q 027530 141 AVAPPFDYIIGTDVVYAEHLLEPLLQTIFALSGPKTTILLGYEIRSTSVHEQMLQMW-KSNFNVKLVPKA 209 (222)
Q Consensus 141 ~~~~~fD~Ii~~d~~y~~~~~~~ll~~~~~~l~~~g~~~l~~~~r~~~~~~~f~~~~-~~~~~v~~v~~~ 209 (222)
. .++||+|+++. ...++.+++.+.++|+|||.+++....... ..+.+.. ..++.++.+-..
T Consensus 109 ~-~~~fDlV~~~~----~~~~~~~l~~~~~~LkpGG~lv~~~~~~~~---~~l~~~~~~~~~~~~~~~~~ 170 (187)
T PRK00107 109 Q-EEKFDVVTSRA----VASLSDLVELCLPLLKPGGRFLALKGRDPE---EEIAELPKALGGKVEEVIEL 170 (187)
T ss_pred C-CCCccEEEEcc----ccCHHHHHHHHHHhcCCCeEEEEEeCCChH---HHHHHHHHhcCceEeeeEEE
Confidence 2 56899999874 245788999999999999999887644322 3333333 247766544443
No 30
>PRK09489 rsmC 16S ribosomal RNA m2G1207 methyltransferase; Provisional
Probab=99.60 E-value=4e-14 Score=120.39 Aligned_cols=132 Identities=14% Similarity=0.099 Sum_probs=97.4
Q ss_pred EEEEeeCCCCccccccccchHHHHHHHHhhhccCCCCCCCCCCCCeEEEeCCCccHHHHHHHHhCC--EEEEecc-hhhH
Q 027530 22 QLQFSQDPNSKHLGTTVWDASVVFVKYLEKNCRKGRFCPSKLKGKRVIELGAGCGVAGFGMALLGC--NVITTDQ-IEVL 98 (222)
Q Consensus 22 ~~~i~q~~~~~~~g~~~W~~~~~la~~l~~~~~~~~~~~~~~~~~~vLelGcG~G~~~i~la~~g~--~v~~~D~-~~~l 98 (222)
.+++...|+.+..+ .+-.++..|.+.+.. . ...+|||||||+|.+++.+++.+. +|+++|. +.|+
T Consensus 166 ~l~i~~~pgvFs~~-~lD~gt~lLl~~l~~----------~-~~g~VLDlGCG~G~ls~~la~~~p~~~v~~vDis~~Al 233 (342)
T PRK09489 166 GLTVKTLPGVFSRD-GLDVGSQLLLSTLTP----------H-TKGKVLDVGCGAGVLSAVLARHSPKIRLTLSDVSAAAL 233 (342)
T ss_pred CEEEEeCCCCCCCC-CCCHHHHHHHHhccc----------c-CCCeEEEeccCcCHHHHHHHHhCCCCEEEEEECCHHHH
Confidence 46778888665443 445566777776632 2 234799999999999999998754 7999999 5699
Q ss_pred HHHHHHHHHhhccccccCCCCCCCCCceEEEEeecCCCccccccCCCccEEEEeccccCc-----cCHHHHHHHHHHhcC
Q 027530 99 PLLKRNVEWNTSRISQMNPGSGNLLGSIQAVELDWGNEDHIKAVAPPFDYIIGTDVVYAE-----HLLEPLLQTIFALSG 173 (222)
Q Consensus 99 ~~~~~n~~~n~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~fD~Ii~~d~~y~~-----~~~~~ll~~~~~~l~ 173 (222)
+.+++|++.|++. .++...|... ...++||+|+++++++.. .....+++.+.++|+
T Consensus 234 ~~A~~nl~~n~l~--------------~~~~~~D~~~-----~~~~~fDlIvsNPPFH~g~~~~~~~~~~~i~~a~~~Lk 294 (342)
T PRK09489 234 ESSRATLAANGLE--------------GEVFASNVFS-----DIKGRFDMIISNPPFHDGIQTSLDAAQTLIRGAVRHLN 294 (342)
T ss_pred HHHHHHHHHcCCC--------------CEEEEccccc-----ccCCCccEEEECCCccCCccccHHHHHHHHHHHHHhcC
Confidence 9999999988742 2344333221 125689999999988652 345789999999999
Q ss_pred CCeEEEEEEEE
Q 027530 174 PKTTILLGYEI 184 (222)
Q Consensus 174 ~~g~~~l~~~~ 184 (222)
|||.++++...
T Consensus 295 pgG~L~iVan~ 305 (342)
T PRK09489 295 SGGELRIVANA 305 (342)
T ss_pred cCCEEEEEEeC
Confidence 99999988753
No 31
>PF02353 CMAS: Mycolic acid cyclopropane synthetase; InterPro: IPR003333 This entry represents mycolic acid cyclopropane synthases and related enzymes, including CmaA1, CmaA2 (cyclopropane mycolic acid synthase A1 and A2) and MmaA1-4 (methoxymycolic acid synthase A1-4). All are thought to be S-adenosyl-L-methionine (SAM) utilising methyltransferases []. Mycolic acid cyclopropane synthase or cyclopropane-fatty-acyl-phospholipid synthase (CFA synthase) 2.1.1.79 from EC catalyses the reaction: S-adenosyl-L-methionine + phospholipid olefinic fatty acid -> S-adenosyl-L-homocysteine + phospholipid cyclopropane fatty acid. The major mycolic acid produced by Mycobacterium tuberculosis contains two cis-cyclopropanes in the meromycolate chain. Cyclopropanation may contribute to the structural integrity of the cell wall complex [].; GO: 0008610 lipid biosynthetic process; PDB: 3HA5_A 2FK8_A 3HA7_A 3HA3_A 2FK7_A 1KPG_D 1KP9_B 1KPH_D 3VC2_E 3VC1_D ....
Probab=99.58 E-value=4.5e-14 Score=116.52 Aligned_cols=106 Identities=18% Similarity=0.236 Sum_probs=82.5
Q ss_pred CCCCCCeEEEeCCCccHHHHHHHHh-CCEEEEecc-hhhHHHHHHHHHHhhccccccCCCCCCCCCceEEEEeecCCCcc
Q 027530 61 SKLKGKRVIELGAGCGVAGFGMALL-GCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSGNLLGSIQAVELDWGNEDH 138 (222)
Q Consensus 61 ~~~~~~~vLelGcG~G~~~i~la~~-g~~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~ 138 (222)
...+|.+|||||||.|-+++.+++. |++|+++.+ ++..+.+++.++..++. +++++...||.+.
T Consensus 59 ~l~~G~~vLDiGcGwG~~~~~~a~~~g~~v~gitlS~~Q~~~a~~~~~~~gl~------------~~v~v~~~D~~~~-- 124 (273)
T PF02353_consen 59 GLKPGDRVLDIGCGWGGLAIYAAERYGCHVTGITLSEEQAEYARERIREAGLE------------DRVEVRLQDYRDL-- 124 (273)
T ss_dssp T--TT-EEEEES-TTSHHHHHHHHHH--EEEEEES-HHHHHHHHHHHHCSTSS------------STEEEEES-GGG---
T ss_pred CCCCCCEEEEeCCCccHHHHHHHHHcCcEEEEEECCHHHHHHHHHHHHhcCCC------------CceEEEEeecccc--
Confidence 5668899999999999999999987 999999999 55899999999877753 5788888777543
Q ss_pred ccccCCCccEEEEeccccCc--cCHHHHHHHHHHhcCCCeEEEEEEEE
Q 027530 139 IKAVAPPFDYIIGTDVVYAE--HLLEPLLQTIFALSGPKTTILLGYEI 184 (222)
Q Consensus 139 ~~~~~~~fD~Ii~~d~~y~~--~~~~~ll~~~~~~l~~~g~~~l~~~~ 184 (222)
+.+||.|++-+++.+. ...+.+++.+.++|+|||++++....
T Consensus 125 ----~~~fD~IvSi~~~Ehvg~~~~~~~f~~~~~~LkpgG~~~lq~i~ 168 (273)
T PF02353_consen 125 ----PGKFDRIVSIEMFEHVGRKNYPAFFRKISRLLKPGGRLVLQTIT 168 (273)
T ss_dssp ------S-SEEEEESEGGGTCGGGHHHHHHHHHHHSETTEEEEEEEEE
T ss_pred ----CCCCCEEEEEechhhcChhHHHHHHHHHHHhcCCCcEEEEEecc
Confidence 3499999999999886 57889999999999999999876544
No 32
>TIGR00452 methyltransferase, putative. Known examples to date are restricted to the proteobacteria.
Probab=99.58 E-value=3.6e-14 Score=119.04 Aligned_cols=106 Identities=18% Similarity=0.164 Sum_probs=80.5
Q ss_pred CCCCCCeEEEeCCCccHHHHHHHHhCC-EEEEecch-hhHHHHHHHHHHhhccccccCCCCCCCCCceEEEEeecCCCcc
Q 027530 61 SKLKGKRVIELGAGCGVAGFGMALLGC-NVITTDQI-EVLPLLKRNVEWNTSRISQMNPGSGNLLGSIQAVELDWGNEDH 138 (222)
Q Consensus 61 ~~~~~~~vLelGcG~G~~~i~la~~g~-~v~~~D~~-~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~ 138 (222)
...+|++|||+|||+|..++.++..|+ .|+++|.+ .++..++....... ...++.+..++..+.
T Consensus 118 ~~~~g~~VLDvGCG~G~~~~~~~~~g~~~v~GiDpS~~ml~q~~~~~~~~~------------~~~~v~~~~~~ie~l-- 183 (314)
T TIGR00452 118 SPLKGRTILDVGCGSGYHMWRMLGHGAKSLVGIDPTVLFLCQFEAVRKLLD------------NDKRAILEPLGIEQL-- 183 (314)
T ss_pred CCCCCCEEEEeccCCcHHHHHHHHcCCCEEEEEcCCHHHHHHHHHHHHHhc------------cCCCeEEEECCHHHC--
Confidence 456789999999999999999988887 59999984 47766533222111 113556666544332
Q ss_pred ccccCCCccEEEEeccccCccCHHHHHHHHHHhcCCCeEEEEEE
Q 027530 139 IKAVAPPFDYIIGTDVVYAEHLLEPLLQTIFALSGPKTTILLGY 182 (222)
Q Consensus 139 ~~~~~~~fD~Ii~~d~~y~~~~~~~ll~~~~~~l~~~g~~~l~~ 182 (222)
+. ...||+|+++.++||..+...+++.+++.|+|||.+++..
T Consensus 184 -p~-~~~FD~V~s~gvL~H~~dp~~~L~el~r~LkpGG~Lvlet 225 (314)
T TIGR00452 184 -HE-LYAFDTVFSMGVLYHRKSPLEHLKQLKHQLVIKGELVLET 225 (314)
T ss_pred -CC-CCCcCEEEEcchhhccCCHHHHHHHHHHhcCCCCEEEEEE
Confidence 22 3489999999999999999999999999999999999864
No 33
>PLN02233 ubiquinone biosynthesis methyltransferase
Probab=99.57 E-value=8.2e-14 Score=114.61 Aligned_cols=110 Identities=19% Similarity=0.132 Sum_probs=86.4
Q ss_pred CCCCeEEEeCCCccHHHHHHHHh-C--CEEEEecc-hhhHHHHHHHHHHhhccccccCCCCCCCCCceEEEEeecCCCcc
Q 027530 63 LKGKRVIELGAGCGVAGFGMALL-G--CNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSGNLLGSIQAVELDWGNEDH 138 (222)
Q Consensus 63 ~~~~~vLelGcG~G~~~i~la~~-g--~~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~ 138 (222)
.++.+|||+|||+|..+..+++. + .+|+++|. ++|++.++++...... ....++++...|.. .
T Consensus 72 ~~~~~VLDlGcGtG~~~~~la~~~~~~~~V~gvD~S~~ml~~A~~r~~~~~~----------~~~~~i~~~~~d~~---~ 138 (261)
T PLN02233 72 KMGDRVLDLCCGSGDLAFLLSEKVGSDGKVMGLDFSSEQLAVAASRQELKAK----------SCYKNIEWIEGDAT---D 138 (261)
T ss_pred CCCCEEEEECCcCCHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHhhhhhh----------ccCCCeEEEEcccc---c
Confidence 35789999999999999988875 4 48999999 5699999876542110 01246778775543 3
Q ss_pred ccccCCCccEEEEeccccCccCHHHHHHHHHHhcCCCeEEEEEEEEc
Q 027530 139 IKAVAPPFDYIIGTDVVYAEHLLEPLLQTIFALSGPKTTILLGYEIR 185 (222)
Q Consensus 139 ~~~~~~~fD~Ii~~d~~y~~~~~~~ll~~~~~~l~~~g~~~l~~~~r 185 (222)
++..+++||+|+++.++++..+...+++.+.++|+|||.+++....+
T Consensus 139 lp~~~~sfD~V~~~~~l~~~~d~~~~l~ei~rvLkpGG~l~i~d~~~ 185 (261)
T PLN02233 139 LPFDDCYFDAITMGYGLRNVVDRLKAMQEMYRVLKPGSRVSILDFNK 185 (261)
T ss_pred CCCCCCCEeEEEEecccccCCCHHHHHHHHHHHcCcCcEEEEEECCC
Confidence 44456789999999999998899999999999999999998876544
No 34
>PRK15068 tRNA mo(5)U34 methyltransferase; Provisional
Probab=99.57 E-value=5.6e-14 Score=118.79 Aligned_cols=105 Identities=20% Similarity=0.195 Sum_probs=81.3
Q ss_pred CCCCCeEEEeCCCccHHHHHHHHhCC-EEEEecch-hhHHHHHHHHHHhhccccccCCCCCCCCCceEEEEeecCCCccc
Q 027530 62 KLKGKRVIELGAGCGVAGFGMALLGC-NVITTDQI-EVLPLLKRNVEWNTSRISQMNPGSGNLLGSIQAVELDWGNEDHI 139 (222)
Q Consensus 62 ~~~~~~vLelGcG~G~~~i~la~~g~-~v~~~D~~-~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~ 139 (222)
..+|++|||||||+|..++.++..|+ .|+++|.+ .++..++......+ ...++.+...+..+.
T Consensus 120 ~l~g~~VLDIGCG~G~~~~~la~~g~~~V~GiD~S~~~l~q~~a~~~~~~------------~~~~i~~~~~d~e~l--- 184 (322)
T PRK15068 120 PLKGRTVLDVGCGNGYHMWRMLGAGAKLVVGIDPSQLFLCQFEAVRKLLG------------NDQRAHLLPLGIEQL--- 184 (322)
T ss_pred CCCCCEEEEeccCCcHHHHHHHHcCCCEEEEEcCCHHHHHHHHHHHHhcC------------CCCCeEEEeCCHHHC---
Confidence 46789999999999999999999887 59999984 46654333222111 123677877665433
Q ss_pred cccCCCccEEEEeccccCccCHHHHHHHHHHhcCCCeEEEEEE
Q 027530 140 KAVAPPFDYIIGTDVVYAEHLLEPLLQTIFALSGPKTTILLGY 182 (222)
Q Consensus 140 ~~~~~~fD~Ii~~d~~y~~~~~~~ll~~~~~~l~~~g~~~l~~ 182 (222)
+. .++||+|++..++||..+...+++.+++.|+|||.+++..
T Consensus 185 p~-~~~FD~V~s~~vl~H~~dp~~~L~~l~~~LkpGG~lvl~~ 226 (322)
T PRK15068 185 PA-LKAFDTVFSMGVLYHRRSPLDHLKQLKDQLVPGGELVLET 226 (322)
T ss_pred CC-cCCcCEEEECChhhccCCHHHHHHHHHHhcCCCcEEEEEE
Confidence 33 6789999999999999999999999999999999998864
No 35
>PRK08287 cobalt-precorrin-6Y C(15)-methyltransferase; Validated
Probab=99.57 E-value=1.8e-13 Score=107.12 Aligned_cols=117 Identities=19% Similarity=0.207 Sum_probs=85.3
Q ss_pred CCCCeEEEeCCCccHHHHHHHHhC--CEEEEecc-hhhHHHHHHHHHHhhccccccCCCCCCCCCceEEEEeecCCCccc
Q 027530 63 LKGKRVIELGAGCGVAGFGMALLG--CNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSGNLLGSIQAVELDWGNEDHI 139 (222)
Q Consensus 63 ~~~~~vLelGcG~G~~~i~la~~g--~~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~ 139 (222)
.++.+|||+|||+|..++.+++.+ .+|+++|. +++++.+++|++.++. .++++...+...
T Consensus 30 ~~~~~vLDiG~G~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~n~~~~~~-------------~~i~~~~~d~~~---- 92 (187)
T PRK08287 30 HRAKHLIDVGAGTGSVSIEAALQFPSLQVTAIERNPDALRLIKENRQRFGC-------------GNIDIIPGEAPI---- 92 (187)
T ss_pred CCCCEEEEECCcCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHhCC-------------CCeEEEecCchh----
Confidence 367899999999999999999875 47999999 6699999999988763 256766644321
Q ss_pred cccCCCccEEEEeccccCccCHHHHHHHHHHhcCCCeEEEEEEEEcChhHHHHHHHHHh-cCCe
Q 027530 140 KAVAPPFDYIIGTDVVYAEHLLEPLLQTIFALSGPKTTILLGYEIRSTSVHEQMLQMWK-SNFN 202 (222)
Q Consensus 140 ~~~~~~fD~Ii~~d~~y~~~~~~~ll~~~~~~l~~~g~~~l~~~~r~~~~~~~f~~~~~-~~~~ 202 (222)
....+||+|+++... ..+..+++.+.+.|+|||.+++....... ..++.+.++ .+|.
T Consensus 93 -~~~~~~D~v~~~~~~---~~~~~~l~~~~~~Lk~gG~lv~~~~~~~~--~~~~~~~l~~~g~~ 150 (187)
T PRK08287 93 -ELPGKADAIFIGGSG---GNLTAIIDWSLAHLHPGGRLVLTFILLEN--LHSALAHLEKCGVS 150 (187)
T ss_pred -hcCcCCCEEEECCCc---cCHHHHHHHHHHhcCCCeEEEEEEecHhh--HHHHHHHHHHCCCC
Confidence 124579999987543 34678899999999999999886543222 244445553 4553
No 36
>COG2230 Cfa Cyclopropane fatty acid synthase and related methyltransferases [Cell envelope biogenesis, outer membrane]
Probab=99.56 E-value=6.7e-14 Score=114.53 Aligned_cols=107 Identities=18% Similarity=0.271 Sum_probs=92.3
Q ss_pred CCCCCCeEEEeCCCccHHHHHHHHh-CCEEEEecc-hhhHHHHHHHHHHhhccccccCCCCCCCCCceEEEEeecCCCcc
Q 027530 61 SKLKGKRVIELGAGCGVAGFGMALL-GCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSGNLLGSIQAVELDWGNEDH 138 (222)
Q Consensus 61 ~~~~~~~vLelGcG~G~~~i~la~~-g~~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~ 138 (222)
..-+|++|||||||.|.+++.+|+. |.+|+++++ ++..+.+++.++.-++. .++++...||.+..
T Consensus 69 ~L~~G~~lLDiGCGWG~l~~~aA~~y~v~V~GvTlS~~Q~~~~~~r~~~~gl~------------~~v~v~l~d~rd~~- 135 (283)
T COG2230 69 GLKPGMTLLDIGCGWGGLAIYAAEEYGVTVVGVTLSEEQLAYAEKRIAARGLE------------DNVEVRLQDYRDFE- 135 (283)
T ss_pred CCCCCCEEEEeCCChhHHHHHHHHHcCCEEEEeeCCHHHHHHHHHHHHHcCCC------------cccEEEeccccccc-
Confidence 5668999999999999999999987 899999999 55999999999887753 58999998998763
Q ss_pred ccccCCCccEEEEeccccCccC--HHHHHHHHHHhcCCCeEEEEEEEEc
Q 027530 139 IKAVAPPFDYIIGTDVVYAEHL--LEPLLQTIFALSGPKTTILLGYEIR 185 (222)
Q Consensus 139 ~~~~~~~fD~Ii~~d~~y~~~~--~~~ll~~~~~~l~~~g~~~l~~~~r 185 (222)
++||-|+|-+.+.+... .+.+++.+.++|+|||++++-...+
T Consensus 136 -----e~fDrIvSvgmfEhvg~~~~~~ff~~~~~~L~~~G~~llh~I~~ 179 (283)
T COG2230 136 -----EPFDRIVSVGMFEHVGKENYDDFFKKVYALLKPGGRMLLHSITG 179 (283)
T ss_pred -----cccceeeehhhHHHhCcccHHHHHHHHHhhcCCCceEEEEEecC
Confidence 45999999999988554 9999999999999999998865543
No 37
>PRK12335 tellurite resistance protein TehB; Provisional
Probab=99.56 E-value=4.2e-14 Score=117.91 Aligned_cols=101 Identities=22% Similarity=0.322 Sum_probs=81.3
Q ss_pred CCCeEEEeCCCccHHHHHHHHhCCEEEEecc-hhhHHHHHHHHHHhhccccccCCCCCCCCCceEEEEeecCCCcccccc
Q 027530 64 KGKRVIELGAGCGVAGFGMALLGCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSGNLLGSIQAVELDWGNEDHIKAV 142 (222)
Q Consensus 64 ~~~~vLelGcG~G~~~i~la~~g~~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~ 142 (222)
++++|||+|||+|..++.+++.|.+|+++|. +.+++.++++++.+++ ++++...|..... .
T Consensus 120 ~~~~vLDlGcG~G~~~~~la~~g~~V~avD~s~~ai~~~~~~~~~~~l--------------~v~~~~~D~~~~~----~ 181 (287)
T PRK12335 120 KPGKALDLGCGQGRNSLYLALLGFDVTAVDINQQSLENLQEIAEKENL--------------NIRTGLYDINSAS----I 181 (287)
T ss_pred CCCCEEEeCCCCCHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHHcCC--------------ceEEEEechhccc----c
Confidence 4569999999999999999999999999999 5699999999887652 4566655543321 2
Q ss_pred CCCccEEEEeccccCc--cCHHHHHHHHHHhcCCCeEEEEEE
Q 027530 143 APPFDYIIGTDVVYAE--HLLEPLLQTIFALSGPKTTILLGY 182 (222)
Q Consensus 143 ~~~fD~Ii~~d~~y~~--~~~~~ll~~~~~~l~~~g~~~l~~ 182 (222)
+++||+|+++.++++. +....+++.+.++|+|||.+++..
T Consensus 182 ~~~fD~I~~~~vl~~l~~~~~~~~l~~~~~~LkpgG~~l~v~ 223 (287)
T PRK12335 182 QEEYDFILSTVVLMFLNRERIPAIIKNMQEHTNPGGYNLIVC 223 (287)
T ss_pred cCCccEEEEcchhhhCCHHHHHHHHHHHHHhcCCCcEEEEEE
Confidence 5789999999988764 367789999999999999976643
No 38
>TIGR03704 PrmC_rel_meth putative protein-(glutamine-N5) methyltransferase, unknown substrate-specific. This protein family is closely related to two different families of protein-(glutamine-N5) methyltransferase. The first is PrmB, which modifies ribosomal protein L3 in some bacteria. The second is PrmC (HemK), which modifies peptide chain release factors 1 and 2 in most bacteria and also in eukaryotes. The glutamine side chain-binding motif NPPY shared by PrmB and PrmC is N[VAT]PY in this family. The protein substrate is unknown.
Probab=99.56 E-value=2e-13 Score=111.58 Aligned_cols=145 Identities=13% Similarity=0.123 Sum_probs=98.6
Q ss_pred hHHHHHHHHhhhccCCCCCCCCCCCCeEEEeCCCccHHHHHHHHh--CCEEEEecc-hhhHHHHHHHHHHhhccccccCC
Q 027530 41 ASVVFVKYLEKNCRKGRFCPSKLKGKRVIELGAGCGVAGFGMALL--GCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNP 117 (222)
Q Consensus 41 ~~~~la~~l~~~~~~~~~~~~~~~~~~vLelGcG~G~~~i~la~~--g~~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~ 117 (222)
.+..|.+++.... .....+.+|||+|||+|.+++.+++. +.+|+++|+ +++++.+++|+..|+
T Consensus 69 ~Te~Lv~~~l~~~------~~~~~~~~vLDlg~GsG~i~l~la~~~~~~~v~~vDis~~al~~A~~N~~~~~-------- 134 (251)
T TIGR03704 69 RTEFLVDEAAALA------RPRSGTLVVVDLCCGSGAVGAALAAALDGIELHAADIDPAAVRCARRNLADAG-------- 134 (251)
T ss_pred cHHHHHHHHHHhh------cccCCCCEEEEecCchHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcC--------
Confidence 3567777665432 11123458999999999999998875 458999999 679999999998764
Q ss_pred CCCCCCCceEEEEeecCCCccccccCCCccEEEEeccccCcc--------------------------CHHHHHHHHHHh
Q 027530 118 GSGNLLGSIQAVELDWGNEDHIKAVAPPFDYIIGTDVVYAEH--------------------------LLEPLLQTIFAL 171 (222)
Q Consensus 118 ~~~~~~~~v~~~~~d~~~~~~~~~~~~~fD~Ii~~d~~y~~~--------------------------~~~~ll~~~~~~ 171 (222)
+++...|+.+.... ...++||+|++++++.... ....+++.+.++
T Consensus 135 --------~~~~~~D~~~~l~~-~~~~~fDlVv~NPPy~~~~~~~~~~~e~~~~ep~~al~gg~dgl~~~~~i~~~a~~~ 205 (251)
T TIGR03704 135 --------GTVHEGDLYDALPT-ALRGRVDILAANAPYVPTDAIALMPPEARDHEPRVALDGGADGLDVLRRVAAGAPDW 205 (251)
T ss_pred --------CEEEEeechhhcch-hcCCCEeEEEECCCCCCchhhhcCCHHHHhCCCHHHhcCCCcHHHHHHHHHHHHHHh
Confidence 25566666542211 1135799999998865211 134677778889
Q ss_pred cCCCeEEEEEEEEcChhHHHHHHHHH-hcCCeEEEecCCCC
Q 027530 172 SGPKTTILLGYEIRSTSVHEQMLQMW-KSNFNVKLVPKAKE 211 (222)
Q Consensus 172 l~~~g~~~l~~~~r~~~~~~~f~~~~-~~~~~v~~v~~~~~ 211 (222)
|+|||.+++.+..... ....+.+ +.+|....+.+.++
T Consensus 206 L~~gG~l~l~~~~~~~---~~v~~~l~~~g~~~~~~~~~~~ 243 (251)
T TIGR03704 206 LAPGGHLLVETSERQA---PLAVEAFARAGLIARVASSEEL 243 (251)
T ss_pred cCCCCEEEEEECcchH---HHHHHHHHHCCCCceeeEcccc
Confidence 9999999988764332 3445544 35777766665544
No 39
>PTZ00098 phosphoethanolamine N-methyltransferase; Provisional
Probab=99.56 E-value=6.8e-14 Score=115.20 Aligned_cols=105 Identities=16% Similarity=0.147 Sum_probs=82.9
Q ss_pred CCCCCeEEEeCCCccHHHHHHHHh-CCEEEEecc-hhhHHHHHHHHHHhhccccccCCCCCCCCCceEEEEeecCCCccc
Q 027530 62 KLKGKRVIELGAGCGVAGFGMALL-GCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSGNLLGSIQAVELDWGNEDHI 139 (222)
Q Consensus 62 ~~~~~~vLelGcG~G~~~i~la~~-g~~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~ 139 (222)
..++.+|||||||+|..+..+++. +++|+++|+ +++++.++++.... .++.+...|..+ .
T Consensus 50 l~~~~~VLDiGcG~G~~a~~la~~~~~~v~giD~s~~~~~~a~~~~~~~---------------~~i~~~~~D~~~---~ 111 (263)
T PTZ00098 50 LNENSKVLDIGSGLGGGCKYINEKYGAHVHGVDICEKMVNIAKLRNSDK---------------NKIEFEANDILK---K 111 (263)
T ss_pred CCCCCEEEEEcCCCChhhHHHHhhcCCEEEEEECCHHHHHHHHHHcCcC---------------CceEEEECCccc---C
Confidence 456789999999999999888764 679999999 56999998875421 357777755542 2
Q ss_pred cccCCCccEEEEeccccCcc--CHHHHHHHHHHhcCCCeEEEEEEEE
Q 027530 140 KAVAPPFDYIIGTDVVYAEH--LLEPLLQTIFALSGPKTTILLGYEI 184 (222)
Q Consensus 140 ~~~~~~fD~Ii~~d~~y~~~--~~~~ll~~~~~~l~~~g~~~l~~~~ 184 (222)
+..+++||+|++.+++++.. ....+++.+.++|+|||.+++....
T Consensus 112 ~~~~~~FD~V~s~~~l~h~~~~d~~~~l~~i~r~LkPGG~lvi~d~~ 158 (263)
T PTZ00098 112 DFPENTFDMIYSRDAILHLSYADKKKLFEKCYKWLKPNGILLITDYC 158 (263)
T ss_pred CCCCCCeEEEEEhhhHHhCCHHHHHHHHHHHHHHcCCCcEEEEEEec
Confidence 33467899999998887653 6788999999999999999988653
No 40
>PF13659 Methyltransf_26: Methyltransferase domain; PDB: 3GJY_A 3LPM_B 2NP6_D 1AQI_B 2ADM_B 2IH2_A 2JG3_A 2IBS_D 2NP7_A 2IBT_A ....
Probab=99.56 E-value=1.3e-14 Score=104.74 Aligned_cols=106 Identities=21% Similarity=0.232 Sum_probs=83.7
Q ss_pred CCeEEEeCCCccHHHHHHHHhC-CEEEEecc-hhhHHHHHHHHHHhhccccccCCCCCCCCCceEEEEeecCCCcccccc
Q 027530 65 GKRVIELGAGCGVAGFGMALLG-CNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSGNLLGSIQAVELDWGNEDHIKAV 142 (222)
Q Consensus 65 ~~~vLelGcG~G~~~i~la~~g-~~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~ 142 (222)
|.+|||+|||+|...+.+++.+ .+++++|+ +.+++.++.|+..++.. .++++...|+.+.. ....
T Consensus 1 g~~vlD~~~G~G~~~~~~~~~~~~~~~gvdi~~~~~~~a~~~~~~~~~~------------~~~~~~~~D~~~~~-~~~~ 67 (117)
T PF13659_consen 1 GDRVLDPGCGSGTFLLAALRRGAARVTGVDIDPEAVELARRNLPRNGLD------------DRVEVIVGDARDLP-EPLP 67 (117)
T ss_dssp TEEEEEETSTTCHHHHHHHHHCTCEEEEEESSHHHHHHHHHHCHHCTTT------------TTEEEEESHHHHHH-HTCT
T ss_pred CCEEEEcCcchHHHHHHHHHHCCCeEEEEEECHHHHHHHHHHHHHccCC------------ceEEEEECchhhch-hhcc
Confidence 4689999999999999999999 78999999 67999999999988642 57888887775432 1234
Q ss_pred CCCccEEEEeccccCcc--------CHHHHHHHHHHhcCCCeEEEEEEE
Q 027530 143 APPFDYIIGTDVVYAEH--------LLEPLLQTIFALSGPKTTILLGYE 183 (222)
Q Consensus 143 ~~~fD~Ii~~d~~y~~~--------~~~~ll~~~~~~l~~~g~~~l~~~ 183 (222)
.++||+|++++++.... ....+++.+.++|+|+|.+++..+
T Consensus 68 ~~~~D~Iv~npP~~~~~~~~~~~~~~~~~~~~~~~~~L~~gG~~~~~~~ 116 (117)
T PF13659_consen 68 DGKFDLIVTNPPYGPRSGDKAALRRLYSRFLEAAARLLKPGGVLVFITP 116 (117)
T ss_dssp TT-EEEEEE--STTSBTT----GGCHHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred CceeEEEEECCCCccccccchhhHHHHHHHHHHHHHHcCCCeEEEEEeC
Confidence 68999999999987431 246789999999999999988654
No 41
>PRK10258 biotin biosynthesis protein BioC; Provisional
Probab=99.55 E-value=6.3e-14 Score=114.59 Aligned_cols=100 Identities=16% Similarity=0.133 Sum_probs=80.9
Q ss_pred CCCeEEEeCCCccHHHHHHHHhCCEEEEecc-hhhHHHHHHHHHHhhccccccCCCCCCCCCceEEEEeecCCCcccccc
Q 027530 64 KGKRVIELGAGCGVAGFGMALLGCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSGNLLGSIQAVELDWGNEDHIKAV 142 (222)
Q Consensus 64 ~~~~vLelGcG~G~~~i~la~~g~~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~ 142 (222)
++.+|||+|||+|..+..++..+.+|+++|+ +++++.++++.. ...+...|+.+ .+..
T Consensus 42 ~~~~vLDiGcG~G~~~~~l~~~~~~v~~~D~s~~~l~~a~~~~~------------------~~~~~~~d~~~---~~~~ 100 (251)
T PRK10258 42 KFTHVLDAGCGPGWMSRYWRERGSQVTALDLSPPMLAQARQKDA------------------ADHYLAGDIES---LPLA 100 (251)
T ss_pred CCCeEEEeeCCCCHHHHHHHHcCCeEEEEECCHHHHHHHHhhCC------------------CCCEEEcCccc---CcCC
Confidence 4678999999999999999988999999999 669998887643 12344444432 3334
Q ss_pred CCCccEEEEeccccCccCHHHHHHHHHHhcCCCeEEEEEEEE
Q 027530 143 APPFDYIIGTDVVYAEHLLEPLLQTIFALSGPKTTILLGYEI 184 (222)
Q Consensus 143 ~~~fD~Ii~~d~~y~~~~~~~ll~~~~~~l~~~g~~~l~~~~ 184 (222)
+++||+|+++.++++..+...+++.+.++|+|||.++++...
T Consensus 101 ~~~fD~V~s~~~l~~~~d~~~~l~~~~~~Lk~gG~l~~~~~~ 142 (251)
T PRK10258 101 TATFDLAWSNLAVQWCGNLSTALRELYRVVRPGGVVAFTTLV 142 (251)
T ss_pred CCcEEEEEECchhhhcCCHHHHHHHHHHHcCCCeEEEEEeCC
Confidence 678999999999988888999999999999999999988644
No 42
>COG2890 HemK Methylase of polypeptide chain release factors [Translation, ribosomal structure and biogenesis]
Probab=99.55 E-value=2.1e-13 Score=112.97 Aligned_cols=103 Identities=22% Similarity=0.335 Sum_probs=81.0
Q ss_pred eEEEeCCCccHHHHHHHHhCC--EEEEecc-hhhHHHHHHHHHHhhccccccCCCCCCCCCceEEEEeecCCCccccccC
Q 027530 67 RVIELGAGCGVAGFGMALLGC--NVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSGNLLGSIQAVELDWGNEDHIKAVA 143 (222)
Q Consensus 67 ~vLelGcG~G~~~i~la~~g~--~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~ 143 (222)
+|||||||+|.+++.++..+. +|+++|+ +++++.|++|+..|++ .++.+...||-+. ..
T Consensus 113 ~ilDlGTGSG~iai~la~~~~~~~V~a~Dis~~Al~~A~~Na~~~~l-------------~~~~~~~~dlf~~-----~~ 174 (280)
T COG2890 113 RILDLGTGSGAIAIALAKEGPDAEVIAVDISPDALALARENAERNGL-------------VRVLVVQSDLFEP-----LR 174 (280)
T ss_pred cEEEecCChHHHHHHHHhhCcCCeEEEEECCHHHHHHHHHHHHHcCC-------------ccEEEEeeecccc-----cC
Confidence 799999999999999999876 8999999 6799999999999984 2555565577643 24
Q ss_pred CCccEEEEeccccCcc-------------------------CHHHHHHHHHHhcCCCeEEEEEEEEcCh
Q 027530 144 PPFDYIIGTDVVYAEH-------------------------LLEPLLQTIFALSGPKTTILLGYEIRST 187 (222)
Q Consensus 144 ~~fD~Ii~~d~~y~~~-------------------------~~~~ll~~~~~~l~~~g~~~l~~~~r~~ 187 (222)
++||+||+|+++-..+ ....++..+.++|+|+|.+++-......
T Consensus 175 ~~fDlIVsNPPYip~~~~~~~~~~~~~EP~~Al~~g~dGl~~~~~i~~~a~~~l~~~g~l~le~g~~q~ 243 (280)
T COG2890 175 GKFDLIVSNPPYIPAEDPELLPEVVRYEPLLALVGGGDGLEVYRRILGEAPDILKPGGVLILEIGLTQG 243 (280)
T ss_pred CceeEEEeCCCCCCCcccccChhhhccCHHHHHccCccHHHHHHHHHHhhHHHcCCCcEEEEEECCCcH
Confidence 5999999999874332 2456777788889999988776654333
No 43
>PF03848 TehB: Tellurite resistance protein TehB; InterPro: IPR015985 Tellurite resistance protein TehB is part of a tellurite-reducing operon tehA and tehB. When present in high copy number, TehB is responsible for potassium tellurite resistance, probably by increasing the reduction rate of tellurite to metallic tellurium within the bacterium. TehB is a cytoplasmic protein which possesses three conserved motifs (I, II, and III) found in S-adenosyl-L-methionine (SAM)-dependent non-nucleic acid methyltransferases []. Conformational changes in TehB are observed upon binding of both tellurite and SAM, suggesting that TehB utilises a methyltransferase activity in the detoxification of tellurite. This entry represents the methyltransferase domain found in all TehB proteins.; PDB: 2KW5_A 3MER_B 3M70_A 2I6G_A 4DQ0_D 2XVA_B 2XVM_A.
Probab=99.54 E-value=1.2e-13 Score=107.56 Aligned_cols=104 Identities=24% Similarity=0.278 Sum_probs=79.2
Q ss_pred CCCCCeEEEeCCCccHHHHHHHHhCCEEEEecch-hhHHHHHHHHHHhhccccccCCCCCCCCCceEEEEeecCCCcccc
Q 027530 62 KLKGKRVIELGAGCGVAGFGMALLGCNVITTDQI-EVLPLLKRNVEWNTSRISQMNPGSGNLLGSIQAVELDWGNEDHIK 140 (222)
Q Consensus 62 ~~~~~~vLelGcG~G~~~i~la~~g~~v~~~D~~-~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~ 140 (222)
..+..++||||||.|..++.||++|..|+++|.+ .+++.+++-++..++ .|+....|..+..
T Consensus 28 ~~~~g~~LDlgcG~GRNalyLA~~G~~VtAvD~s~~al~~l~~~a~~~~l--------------~i~~~~~Dl~~~~--- 90 (192)
T PF03848_consen 28 LLKPGKALDLGCGEGRNALYLASQGFDVTAVDISPVALEKLQRLAEEEGL--------------DIRTRVADLNDFD--- 90 (192)
T ss_dssp TS-SSEEEEES-TTSHHHHHHHHTT-EEEEEESSHHHHHHHHHHHHHTT---------------TEEEEE-BGCCBS---
T ss_pred hcCCCcEEEcCCCCcHHHHHHHHCCCeEEEEECCHHHHHHHHHHHhhcCc--------------eeEEEEecchhcc---
Confidence 3466799999999999999999999999999994 599988887776653 4677776665443
Q ss_pred ccCCCccEEEEeccccC--ccCHHHHHHHHHHhcCCCeEEEEEEE
Q 027530 141 AVAPPFDYIIGTDVVYA--EHLLEPLLQTIFALSGPKTTILLGYE 183 (222)
Q Consensus 141 ~~~~~fD~Ii~~d~~y~--~~~~~~ll~~~~~~l~~~g~~~l~~~ 183 (222)
.++.||+|++.-++++ .+..+.+++.+++.++|||.+++...
T Consensus 91 -~~~~yD~I~st~v~~fL~~~~~~~i~~~m~~~~~pGG~~li~~~ 134 (192)
T PF03848_consen 91 -FPEEYDFIVSTVVFMFLQRELRPQIIENMKAATKPGGYNLIVTF 134 (192)
T ss_dssp --TTTEEEEEEESSGGGS-GGGHHHHHHHHHHTEEEEEEEEEEEE
T ss_pred -ccCCcCEEEEEEEeccCCHHHHHHHHHHHHhhcCCcEEEEEEEe
Confidence 2468999998766654 45678899999999999999877543
No 44
>COG2263 Predicted RNA methylase [Translation, ribosomal structure and biogenesis]
Probab=99.54 E-value=2.5e-13 Score=103.97 Aligned_cols=120 Identities=26% Similarity=0.389 Sum_probs=84.1
Q ss_pred CCCCCCeEEEeCCCccHHHHHHHHhCC-EEEEecc-hhhHHHHHHHHHHhhccccccCCCCCCCCCceEEEEeecCCCcc
Q 027530 61 SKLKGKRVIELGAGCGVAGFGMALLGC-NVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSGNLLGSIQAVELDWGNEDH 138 (222)
Q Consensus 61 ~~~~~~~vLelGcG~G~~~i~la~~g~-~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~ 138 (222)
.+.+|++|+|||||||.+++.++.+|+ +|+++|+ +++++.+++|+.+.. .++.+...|..+.
T Consensus 42 g~l~g~~V~DlG~GTG~La~ga~~lGa~~V~~vdiD~~a~ei~r~N~~~l~--------------g~v~f~~~dv~~~-- 105 (198)
T COG2263 42 GDLEGKTVLDLGAGTGILAIGAALLGASRVLAVDIDPEALEIARANAEELL--------------GDVEFVVADVSDF-- 105 (198)
T ss_pred CCcCCCEEEEcCCCcCHHHHHHHhcCCcEEEEEecCHHHHHHHHHHHHhhC--------------CceEEEEcchhhc--
Confidence 678999999999999999999999998 5999999 789999999999743 5788888666554
Q ss_pred ccccCCCccEEEEeccccCc--cCHHHHHHHHHHhcCCCeEEEEEEEEcChhHHHHHHHHH--hcCCeEEEec
Q 027530 139 IKAVAPPFDYIIGTDVVYAE--HLLEPLLQTIFALSGPKTTILLGYEIRSTSVHEQMLQMW--KSNFNVKLVP 207 (222)
Q Consensus 139 ~~~~~~~fD~Ii~~d~~y~~--~~~~~ll~~~~~~l~~~g~~~l~~~~r~~~~~~~f~~~~--~~~~~v~~v~ 207 (222)
..++|.+|.|+++=.. +.=.+++....+.. -.+| +.++.. ...|.+.. ..|+.+....
T Consensus 106 ----~~~~dtvimNPPFG~~~rhaDr~Fl~~Ale~s---~vVY-siH~a~---~~~f~~~~~~~~G~~v~~~~ 167 (198)
T COG2263 106 ----RGKFDTVIMNPPFGSQRRHADRPFLLKALEIS---DVVY-SIHKAG---SRDFVEKFAADLGGTVTHIE 167 (198)
T ss_pred ----CCccceEEECCCCccccccCCHHHHHHHHHhh---heEE-Eeeccc---cHHHHHHHHHhcCCeEEEEE
Confidence 5789999999987432 11223555555543 2333 333222 24555443 3466665443
No 45
>PRK14966 unknown domain/N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase fusion protein; Provisional
Probab=99.54 E-value=9.2e-13 Score=113.48 Aligned_cols=135 Identities=16% Similarity=0.159 Sum_probs=94.7
Q ss_pred hHHHHHHHHhhhccCCCCCCCCCCCCeEEEeCCCccHHHHHHHHh--CCEEEEecc-hhhHHHHHHHHHHhhccccccCC
Q 027530 41 ASVVFVKYLEKNCRKGRFCPSKLKGKRVIELGAGCGVAGFGMALL--GCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNP 117 (222)
Q Consensus 41 ~~~~la~~l~~~~~~~~~~~~~~~~~~vLelGcG~G~~~i~la~~--g~~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~ 117 (222)
.+..+.+.+.+.. .++.+|||+|||+|.+++.+++. +.+|+++|+ +++++.+++|++.++
T Consensus 237 eTE~LVe~aL~~l---------~~~~rVLDLGcGSG~IaiaLA~~~p~a~VtAVDiS~~ALe~AreNa~~~g-------- 299 (423)
T PRK14966 237 ETEHLVEAVLARL---------PENGRVWDLGTGSGAVAVTVALERPDAFVRASDISPPALETARKNAADLG-------- 299 (423)
T ss_pred cHHHHHHHhhhcc---------CCCCEEEEEeChhhHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcC--------
Confidence 4667777776542 24568999999999999998865 468999999 669999999998765
Q ss_pred CCCCCCCceEEEEeecCCCccccccCCCccEEEEeccccCcc-------------------------CHHHHHHHHHHhc
Q 027530 118 GSGNLLGSIQAVELDWGNEDHIKAVAPPFDYIIGTDVVYAEH-------------------------LLEPLLQTIFALS 172 (222)
Q Consensus 118 ~~~~~~~~v~~~~~d~~~~~~~~~~~~~fD~Ii~~d~~y~~~-------------------------~~~~ll~~~~~~l 172 (222)
.++++.+.||.+... + ...+||+|++|+++.... .+..+++.+.++|
T Consensus 300 ------~rV~fi~gDl~e~~l-~-~~~~FDLIVSNPPYI~~~e~~l~~~~v~~EP~~AL~gG~dGL~~yr~Ii~~a~~~L 371 (423)
T PRK14966 300 ------ARVEFAHGSWFDTDM-P-SEGKWDIIVSNPPYIENGDKHLLQGDLRFEPQIALTDFSDGLSCIRTLAQGAPDRL 371 (423)
T ss_pred ------CcEEEEEcchhcccc-c-cCCCccEEEECCCCCCcchhhhcchhhhcCHHHHhhCCCchHHHHHHHHHHHHHhc
Confidence 267888888754321 1 235799999999863211 1346777778889
Q ss_pred CCCeEEEEEEEEcChhHHHHHHHHHh-cCCeE
Q 027530 173 GPKTTILLGYEIRSTSVHEQMLQMWK-SNFNV 203 (222)
Q Consensus 173 ~~~g~~~l~~~~r~~~~~~~f~~~~~-~~~~v 203 (222)
+|+|.+++........ ...+.++ .+|..
T Consensus 372 kpgG~lilEiG~~Q~e---~V~~ll~~~Gf~~ 400 (423)
T PRK14966 372 AEGGFLLLEHGFDQGA---AVRGVLAENGFSG 400 (423)
T ss_pred CCCcEEEEEECccHHH---HHHHHHHHCCCcE
Confidence 9999988766543333 3333332 46644
No 46
>PF13489 Methyltransf_23: Methyltransferase domain; PDB: 3JWJ_A 3JWH_B 2AOV_B 2AOT_A 1JQD_B 2AOX_A 1JQE_A 2AOU_B 2AOW_A 3DLI_C ....
Probab=99.54 E-value=8.8e-14 Score=105.52 Aligned_cols=99 Identities=24% Similarity=0.252 Sum_probs=79.4
Q ss_pred CCCCCeEEEeCCCccHHHHHHHHhCCEEEEecc-hhhHHHHHHHHHHhhccccccCCCCCCCCCceEEEEeecCCCcccc
Q 027530 62 KLKGKRVIELGAGCGVAGFGMALLGCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSGNLLGSIQAVELDWGNEDHIK 140 (222)
Q Consensus 62 ~~~~~~vLelGcG~G~~~i~la~~g~~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~ 140 (222)
..++++|||+|||+|..+..+++.|.+|+++|. +.+++. .+ +.....+- ....
T Consensus 20 ~~~~~~vLDiGcG~G~~~~~l~~~~~~~~g~D~~~~~~~~------~~-----------------~~~~~~~~---~~~~ 73 (161)
T PF13489_consen 20 LKPGKRVLDIGCGTGSFLRALAKRGFEVTGVDISPQMIEK------RN-----------------VVFDNFDA---QDPP 73 (161)
T ss_dssp TTTTSEEEEESSTTSHHHHHHHHTTSEEEEEESSHHHHHH------TT-----------------SEEEEEEC---HTHH
T ss_pred cCCCCEEEEEcCCCCHHHHHHHHhCCEEEEEECCHHHHhh------hh-----------------hhhhhhhh---hhhh
Confidence 457789999999999999999999999999998 557766 11 11121111 1222
Q ss_pred ccCCCccEEEEeccccCccCHHHHHHHHHHhcCCCeEEEEEEEEcC
Q 027530 141 AVAPPFDYIIGTDVVYAEHLLEPLLQTIFALSGPKTTILLGYEIRS 186 (222)
Q Consensus 141 ~~~~~fD~Ii~~d~~y~~~~~~~ll~~~~~~l~~~g~~~l~~~~r~ 186 (222)
..+++||+|+++.++++..+...+++.+.++|+|||.++++.+.+.
T Consensus 74 ~~~~~fD~i~~~~~l~~~~d~~~~l~~l~~~LkpgG~l~~~~~~~~ 119 (161)
T PF13489_consen 74 FPDGSFDLIICNDVLEHLPDPEEFLKELSRLLKPGGYLVISDPNRD 119 (161)
T ss_dssp CHSSSEEEEEEESSGGGSSHHHHHHHHHHHCEEEEEEEEEEEEBTT
T ss_pred ccccchhhHhhHHHHhhcccHHHHHHHHHHhcCCCCEEEEEEcCCc
Confidence 3467999999999999999999999999999999999999998875
No 47
>PLN02336 phosphoethanolamine N-methyltransferase
Probab=99.53 E-value=2e-13 Score=121.45 Aligned_cols=106 Identities=20% Similarity=0.271 Sum_probs=87.0
Q ss_pred CCCCeEEEeCCCccHHHHHHHHh-CCEEEEecc-hhhHHHHHHHHHHhhccccccCCCCCCCCCceEEEEeecCCCcccc
Q 027530 63 LKGKRVIELGAGCGVAGFGMALL-GCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSGNLLGSIQAVELDWGNEDHIK 140 (222)
Q Consensus 63 ~~~~~vLelGcG~G~~~i~la~~-g~~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~ 140 (222)
.++.+|||+|||+|..++.+++. +.+|+++|+ +++++.+++|.... ..++++...|+.+. +
T Consensus 265 ~~~~~vLDiGcG~G~~~~~la~~~~~~v~gvDiS~~~l~~A~~~~~~~--------------~~~v~~~~~d~~~~---~ 327 (475)
T PLN02336 265 KPGQKVLDVGCGIGGGDFYMAENFDVHVVGIDLSVNMISFALERAIGR--------------KCSVEFEVADCTKK---T 327 (475)
T ss_pred CCCCEEEEEeccCCHHHHHHHHhcCCEEEEEECCHHHHHHHHHHhhcC--------------CCceEEEEcCcccC---C
Confidence 35779999999999999988865 779999999 56999998886522 24678888776543 2
Q ss_pred ccCCCccEEEEeccccCccCHHHHHHHHHHhcCCCeEEEEEEEEc
Q 027530 141 AVAPPFDYIIGTDVVYAEHLLEPLLQTIFALSGPKTTILLGYEIR 185 (222)
Q Consensus 141 ~~~~~fD~Ii~~d~~y~~~~~~~ll~~~~~~l~~~g~~~l~~~~r 185 (222)
..+++||+|++.+++++......+++.+.++|+|||.+++....+
T Consensus 328 ~~~~~fD~I~s~~~l~h~~d~~~~l~~~~r~LkpgG~l~i~~~~~ 372 (475)
T PLN02336 328 YPDNSFDVIYSRDTILHIQDKPALFRSFFKWLKPGGKVLISDYCR 372 (475)
T ss_pred CCCCCEEEEEECCcccccCCHHHHHHHHHHHcCCCeEEEEEEecc
Confidence 235689999999999999999999999999999999999987543
No 48
>TIGR02752 MenG_heptapren 2-heptaprenyl-1,4-naphthoquinone methyltransferase. MenG is a generic term for a methyltransferase that catalyzes the last step in menaquinone biosynthesis; the exact enzymatic activity differs for different MenG because the menaquinone differ in their prenoid side chains in different species. Members of this MenG protein family are 2-heptaprenyl-1,4-naphthoquinone methyltransferase, and are found together in operons with the two subunits of the heptaprenyl diphosphate synthase in Bacillus subtilis and related species.
Probab=99.53 E-value=1.7e-13 Score=110.53 Aligned_cols=105 Identities=14% Similarity=0.106 Sum_probs=85.0
Q ss_pred CCCCeEEEeCCCccHHHHHHHHh-C--CEEEEecc-hhhHHHHHHHHHHhhccccccCCCCCCCCCceEEEEeecCCCcc
Q 027530 63 LKGKRVIELGAGCGVAGFGMALL-G--CNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSGNLLGSIQAVELDWGNEDH 138 (222)
Q Consensus 63 ~~~~~vLelGcG~G~~~i~la~~-g--~~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~ 138 (222)
.++++|||+|||+|..+..+++. + .+|+++|+ +++++.+++|+..++. .++++...|..+.
T Consensus 44 ~~~~~vLDiGcG~G~~~~~la~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~-------------~~v~~~~~d~~~~-- 108 (231)
T TIGR02752 44 QAGTSALDVCCGTADWSIALAEAVGPEGHVIGLDFSENMLSVGRQKVKDAGL-------------HNVELVHGNAMEL-- 108 (231)
T ss_pred CCCCEEEEeCCCcCHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHhcCC-------------CceEEEEechhcC--
Confidence 35789999999999999998875 3 48999999 6799999999876542 3677777665432
Q ss_pred ccccCCCccEEEEeccccCccCHHHHHHHHHHhcCCCeEEEEEEE
Q 027530 139 IKAVAPPFDYIIGTDVVYAEHLLEPLLQTIFALSGPKTTILLGYE 183 (222)
Q Consensus 139 ~~~~~~~fD~Ii~~d~~y~~~~~~~ll~~~~~~l~~~g~~~l~~~ 183 (222)
+..+++||+|+++.++.+.+....+++.+.++|+|||.+++...
T Consensus 109 -~~~~~~fD~V~~~~~l~~~~~~~~~l~~~~~~Lk~gG~l~~~~~ 152 (231)
T TIGR02752 109 -PFDDNSFDYVTIGFGLRNVPDYMQVLREMYRVVKPGGKVVCLET 152 (231)
T ss_pred -CCCCCCccEEEEecccccCCCHHHHHHHHHHHcCcCeEEEEEEC
Confidence 23457899999998888888888999999999999999987653
No 49
>PRK11873 arsM arsenite S-adenosylmethyltransferase; Reviewed
Probab=99.52 E-value=3.2e-13 Score=111.74 Aligned_cols=106 Identities=21% Similarity=0.210 Sum_probs=85.6
Q ss_pred CCCCCeEEEeCCCccHHHHHHHHh-CC--EEEEecc-hhhHHHHHHHHHHhhccccccCCCCCCCCCceEEEEeecCCCc
Q 027530 62 KLKGKRVIELGAGCGVAGFGMALL-GC--NVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSGNLLGSIQAVELDWGNED 137 (222)
Q Consensus 62 ~~~~~~vLelGcG~G~~~i~la~~-g~--~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~v~~~~~d~~~~~ 137 (222)
..++.+|||+|||+|..++.+++. +. +|+++|. +++++.+++|...++. .++++...++.+
T Consensus 75 ~~~g~~VLDiG~G~G~~~~~~a~~~g~~~~v~gvD~s~~~l~~A~~~~~~~g~-------------~~v~~~~~d~~~-- 139 (272)
T PRK11873 75 LKPGETVLDLGSGGGFDCFLAARRVGPTGKVIGVDMTPEMLAKARANARKAGY-------------TNVEFRLGEIEA-- 139 (272)
T ss_pred CCCCCEEEEeCCCCCHHHHHHHHHhCCCCEEEEECCCHHHHHHHHHHHHHcCC-------------CCEEEEEcchhh--
Confidence 347889999999999988877764 44 6999999 6699999999887653 367777766543
Q ss_pred cccccCCCccEEEEeccccCccCHHHHHHHHHHhcCCCeEEEEEEE
Q 027530 138 HIKAVAPPFDYIIGTDVVYAEHLLEPLLQTIFALSGPKTTILLGYE 183 (222)
Q Consensus 138 ~~~~~~~~fD~Ii~~d~~y~~~~~~~ll~~~~~~l~~~g~~~l~~~ 183 (222)
.+..++.||+|+++.++++......+++.+.++|+|||++++...
T Consensus 140 -l~~~~~~fD~Vi~~~v~~~~~d~~~~l~~~~r~LkpGG~l~i~~~ 184 (272)
T PRK11873 140 -LPVADNSVDVIISNCVINLSPDKERVFKEAFRVLKPGGRFAISDV 184 (272)
T ss_pred -CCCCCCceeEEEEcCcccCCCCHHHHHHHHHHHcCCCcEEEEEEe
Confidence 333456899999998888888888999999999999999998653
No 50
>PRK01683 trans-aconitate 2-methyltransferase; Provisional
Probab=99.52 E-value=2.2e-13 Score=111.81 Aligned_cols=98 Identities=16% Similarity=0.157 Sum_probs=78.5
Q ss_pred CCCCeEEEeCCCccHHHHHHHHh--CCEEEEecc-hhhHHHHHHHHHHhhccccccCCCCCCCCCceEEEEeecCCCccc
Q 027530 63 LKGKRVIELGAGCGVAGFGMALL--GCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSGNLLGSIQAVELDWGNEDHI 139 (222)
Q Consensus 63 ~~~~~vLelGcG~G~~~i~la~~--g~~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~ 139 (222)
.++.+|||||||+|..+..+++. +.+|+++|. +++++.++++.. ++.+...|..+.
T Consensus 30 ~~~~~vLDiGcG~G~~~~~la~~~~~~~v~gvD~s~~~i~~a~~~~~------------------~~~~~~~d~~~~--- 88 (258)
T PRK01683 30 ENPRYVVDLGCGPGNSTELLVERWPAARITGIDSSPAMLAEARSRLP------------------DCQFVEADIASW--- 88 (258)
T ss_pred cCCCEEEEEcccCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHhCC------------------CCeEEECchhcc---
Confidence 45789999999999999998876 468999999 569999887642 345555443322
Q ss_pred cccCCCccEEEEeccccCccCHHHHHHHHHHhcCCCeEEEEEE
Q 027530 140 KAVAPPFDYIIGTDVVYAEHLLEPLLQTIFALSGPKTTILLGY 182 (222)
Q Consensus 140 ~~~~~~fD~Ii~~d~~y~~~~~~~ll~~~~~~l~~~g~~~l~~ 182 (222)
. ...+||+|+++.++++..+...+++.+.+.|+|||.+++..
T Consensus 89 ~-~~~~fD~v~~~~~l~~~~d~~~~l~~~~~~LkpgG~~~~~~ 130 (258)
T PRK01683 89 Q-PPQALDLIFANASLQWLPDHLELFPRLVSLLAPGGVLAVQM 130 (258)
T ss_pred C-CCCCccEEEEccChhhCCCHHHHHHHHHHhcCCCcEEEEEC
Confidence 1 24589999999999888888999999999999999998864
No 51
>PRK15128 23S rRNA m(5)C1962 methyltransferase; Provisional
Probab=99.52 E-value=1.5e-12 Score=112.68 Aligned_cols=147 Identities=20% Similarity=0.223 Sum_probs=98.7
Q ss_pred CCCeEEEeCCCccHHHHHHHHhCC-EEEEecc-hhhHHHHHHHHHHhhccccccCCCCCCCCCceEEEEeecCCCcc-cc
Q 027530 64 KGKRVIELGAGCGVAGFGMALLGC-NVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSGNLLGSIQAVELDWGNEDH-IK 140 (222)
Q Consensus 64 ~~~~vLelGcG~G~~~i~la~~g~-~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~-~~ 140 (222)
+|++|||+|||+|..++.++..|+ +|+++|. +.+++.+++|++.|++. ..++++...|+.+... ..
T Consensus 220 ~g~rVLDlfsgtG~~~l~aa~~ga~~V~~VD~s~~al~~a~~N~~~Ngl~-----------~~~v~~i~~D~~~~l~~~~ 288 (396)
T PRK15128 220 ENKRVLNCFSYTGGFAVSALMGGCSQVVSVDTSQEALDIARQNVELNKLD-----------LSKAEFVRDDVFKLLRTYR 288 (396)
T ss_pred CCCeEEEeccCCCHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCCC-----------CCcEEEEEccHHHHHHHHH
Confidence 578999999999999998887776 7999999 56999999999999852 1367888866643211 11
Q ss_pred ccCCCccEEEEeccccCcc---------CHHHHHHHHHHhcCCCeEEEEEEEEcChhHHHHHHHHH-----hcCCeEEEe
Q 027530 141 AVAPPFDYIIGTDVVYAEH---------LLEPLLQTIFALSGPKTTILLGYEIRSTSVHEQMLQMW-----KSNFNVKLV 206 (222)
Q Consensus 141 ~~~~~fD~Ii~~d~~y~~~---------~~~~ll~~~~~~l~~~g~~~l~~~~r~~~~~~~f~~~~-----~~~~~v~~v 206 (222)
....+||+|+++++.+... .+..++....++|+|||.++++.-...-. .+.|.+.+ ..+-++..+
T Consensus 289 ~~~~~fDlVilDPP~f~~~k~~l~~~~~~y~~l~~~a~~lLk~gG~lv~~scs~~~~-~~~f~~~v~~aa~~~~~~~~~l 367 (396)
T PRK15128 289 DRGEKFDVIVMDPPKFVENKSQLMGACRGYKDINMLAIQLLNPGGILLTFSCSGLMT-SDLFQKIIADAAIDAGRDVQFI 367 (396)
T ss_pred hcCCCCCEEEECCCCCCCChHHHHHHHHHHHHHHHHHHHHcCCCeEEEEEeCCCcCC-HHHHHHHHHHHHHHcCCeEEEE
Confidence 1245899999988876532 24556667788899999988754321111 23444433 234566655
Q ss_pred cCCCCCcc----cCCCCCCC
Q 027530 207 PKAKESTM----WGNPLGLY 222 (222)
Q Consensus 207 ~~~~~~~~----~~~~~~~~ 222 (222)
.....+++ ...++|.|
T Consensus 368 ~~~~~~~DhP~~~~~pe~~Y 387 (396)
T PRK15128 368 EQFRQAADHPVIATYPEGLY 387 (396)
T ss_pred EEcCCCCCCCCCCCCCCcCC
Confidence 55444443 34556655
No 52
>smart00828 PKS_MT Methyltransferase in polyketide synthase (PKS) enzymes.
Probab=99.51 E-value=3.8e-13 Score=108.08 Aligned_cols=125 Identities=17% Similarity=0.157 Sum_probs=95.3
Q ss_pred CeEEEeCCCccHHHHHHHHhC--CEEEEecc-hhhHHHHHHHHHHhhccccccCCCCCCCCCceEEEEeecCCCcccccc
Q 027530 66 KRVIELGAGCGVAGFGMALLG--CNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSGNLLGSIQAVELDWGNEDHIKAV 142 (222)
Q Consensus 66 ~~vLelGcG~G~~~i~la~~g--~~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~ 142 (222)
++|||+|||+|..+..+++.. .+|+++|+ +++++.+++++...++ ..++++...|..... .
T Consensus 1 ~~vLDiGcG~G~~~~~la~~~~~~~v~gid~s~~~~~~a~~~~~~~gl------------~~~i~~~~~d~~~~~----~ 64 (224)
T smart00828 1 KRVLDFGCGYGSDLIDLAERHPHLQLHGYTISPEQAEVGRERIRALGL------------QGRIRIFYRDSAKDP----F 64 (224)
T ss_pred CeEEEECCCCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHhcCC------------CcceEEEecccccCC----C
Confidence 479999999999999888764 58999999 5699999999887664 247788876664331 1
Q ss_pred CCCccEEEEeccccCccCHHHHHHHHHHhcCCCeEEEEEEEEcC-------------hhHHHHHHHHH-hcCCeEEEe
Q 027530 143 APPFDYIIGTDVVYAEHLLEPLLQTIFALSGPKTTILLGYEIRS-------------TSVHEQMLQMW-KSNFNVKLV 206 (222)
Q Consensus 143 ~~~fD~Ii~~d~~y~~~~~~~ll~~~~~~l~~~g~~~l~~~~r~-------------~~~~~~f~~~~-~~~~~v~~v 206 (222)
.++||+|++..++++......+++.+.++|+|||.+++...... .....++.+.+ +.+|.+...
T Consensus 65 ~~~fD~I~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~s~~~~~~~l~~~Gf~~~~~ 142 (224)
T smart00828 65 PDTYDLVFGFEVIHHIKDKMDLFSNISRHLKDGGHLVLADFIANLLSAIEHEETTSYLVTREEWAELLARNNLRVVEG 142 (224)
T ss_pred CCCCCEeehHHHHHhCCCHHHHHHHHHHHcCCCCEEEEEEcccccCccccccccccccCCHHHHHHHHHHCCCeEEEe
Confidence 35899999999999988899999999999999999998764321 01134555555 457877543
No 53
>PF08242 Methyltransf_12: Methyltransferase domain; InterPro: IPR013217 Methyl transfer from the ubiquitous donor S-adenosyl-L-methionine (SAM) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalyzed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. This entry represents a methyltransferase domain found in a large variety of SAM-dependent methyltransferases including, but not limited to: Hexaprenyldihydroxybenzoate methyltransferase (2.1.1.114 from EC), a mitochodrial enzyme involved in ubiquinone biosynthesis [] Fatty acid synthase (2.3.1.85 from EC), a biosynthetic enzyme catalysing the formation of long-chain fatty acids Glycine N-methyltransferase (2.1.1.20 from EC) which catalyses the SAM-dependent methylation of glycine to form sarcosine and may play a role in regulating the methylation potential of the cell [] Enniatin synthetase, involved in non-ribosomal biosynthesis of cyclohexadepsipeptidase, enniatin [] Histamine N-methyltransferase (2.1.1.8 from EC), a SAM-dependent histamine-inactivating enzyme [] A probable cobalt-precorrin-6Y C(15)-methyltransferase thought to be involved in adenosylcobalamin biosynthesis [] Structural studies show that this domain forms the Rossman-like alpha-beta fold typical of SAM-dependent methyltransferases [, , ].; PDB: 2VZ8_A 2VZ9_A.
Probab=99.51 E-value=6e-15 Score=103.52 Aligned_cols=95 Identities=15% Similarity=0.232 Sum_probs=60.5
Q ss_pred EEeCCCccHHHHHHHHh--CCEEEEecc-hhhHHHHHHHHHHhhccccccCCCCCCCCCceEEEEeecCCCccccc-cCC
Q 027530 69 IELGAGCGVAGFGMALL--GCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSGNLLGSIQAVELDWGNEDHIKA-VAP 144 (222)
Q Consensus 69 LelGcG~G~~~i~la~~--g~~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~-~~~ 144 (222)
||+|||+|..+..++.. ..+++++|+ +.|++.+++++..... ....... +...+.... ..+
T Consensus 1 LdiGcG~G~~~~~l~~~~~~~~~~~~D~s~~~l~~a~~~~~~~~~-------------~~~~~~~--~~~~~~~~~~~~~ 65 (99)
T PF08242_consen 1 LDIGCGTGRLLRALLEELPDARYTGVDISPSMLERARERLAELGN-------------DNFERLR--FDVLDLFDYDPPE 65 (99)
T ss_dssp -EESTTTS-TTTTHHHHC-EEEEEEEESSSSTTSTTCCCHHHCT----------------EEEEE----SSS---CCC--
T ss_pred CEeCccChHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHhhhcCC-------------cceeEEE--eecCChhhccccc
Confidence 79999999999988887 668999999 5599888887776542 1222222 222221111 125
Q ss_pred CccEEEEeccccCccCHHHHHHHHHHhcCCCeEE
Q 027530 145 PFDYIIGTDVVYAEHLLEPLLQTIFALSGPKTTI 178 (222)
Q Consensus 145 ~fD~Ii~~d~~y~~~~~~~ll~~~~~~l~~~g~~ 178 (222)
+||+|+++.++++.+....+++.+.++|+|||.+
T Consensus 66 ~fD~V~~~~vl~~l~~~~~~l~~~~~~L~pgG~l 99 (99)
T PF08242_consen 66 SFDLVVASNVLHHLEDIEAVLRNIYRLLKPGGIL 99 (99)
T ss_dssp --SEEEEE-TTS--S-HHHHHHHHTTT-TSS-EE
T ss_pred ccceehhhhhHhhhhhHHHHHHHHHHHcCCCCCC
Confidence 9999999999999999999999999999999975
No 54
>TIGR03533 L3_gln_methyl protein-(glutamine-N5) methyltransferase, ribosomal protein L3-specific. Members of this protein family methylate ribosomal protein L3 on a glutamine side chain. This family is related to HemK, a protein-glutamine methyltranferase for peptide chain release factors.
Probab=99.51 E-value=1e-12 Score=109.32 Aligned_cols=104 Identities=15% Similarity=0.200 Sum_probs=80.8
Q ss_pred CCCeEEEeCCCccHHHHHHHHh--CCEEEEecc-hhhHHHHHHHHHHhhccccccCCCCCCCCCceEEEEeecCCCcccc
Q 027530 64 KGKRVIELGAGCGVAGFGMALL--GCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSGNLLGSIQAVELDWGNEDHIK 140 (222)
Q Consensus 64 ~~~~vLelGcG~G~~~i~la~~--g~~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~ 140 (222)
++.+|||+|||+|..++.+++. +.+|+++|+ +++++.+++|+..+++. .++++...|+.+..
T Consensus 121 ~~~~vLDlG~GsG~i~~~la~~~~~~~v~avDis~~al~~A~~n~~~~~~~------------~~i~~~~~D~~~~~--- 185 (284)
T TIGR03533 121 PVKRILDLCTGSGCIAIACAYAFPEAEVDAVDISPDALAVAEINIERHGLE------------DRVTLIQSDLFAAL--- 185 (284)
T ss_pred CCCEEEEEeCchhHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHcCCC------------CcEEEEECchhhcc---
Confidence 3468999999999999999987 458999999 56999999999988742 46888887764321
Q ss_pred ccCCCccEEEEeccccCcc-------------------------CHHHHHHHHHHhcCCCeEEEEEEE
Q 027530 141 AVAPPFDYIIGTDVVYAEH-------------------------LLEPLLQTIFALSGPKTTILLGYE 183 (222)
Q Consensus 141 ~~~~~fD~Ii~~d~~y~~~-------------------------~~~~ll~~~~~~l~~~g~~~l~~~ 183 (222)
...+||+|++++++.... ....+++.+.++|+|||.+++...
T Consensus 186 -~~~~fD~Iv~NPPy~~~~~~~~l~~~~~~ep~~al~gg~dGl~~~~~il~~a~~~L~~gG~l~~e~g 252 (284)
T TIGR03533 186 -PGRKYDLIVSNPPYVDAEDMADLPAEYHHEPELALASGEDGLDLVRRILAEAADHLNENGVLVVEVG 252 (284)
T ss_pred -CCCCccEEEECCCCCCccchhhCCHhhhcCHHHHhcCCCcHHHHHHHHHHHHHHhcCCCCEEEEEEC
Confidence 245799999998753311 124578888889999999887654
No 55
>PRK10909 rsmD 16S rRNA m(2)G966-methyltransferase; Provisional
Probab=99.50 E-value=3.1e-13 Score=106.56 Aligned_cols=107 Identities=15% Similarity=0.135 Sum_probs=83.2
Q ss_pred CCCCeEEEeCCCccHHHHHHHHhC-CEEEEecc-hhhHHHHHHHHHHhhccccccCCCCCCCCCceEEEEeecCCCcccc
Q 027530 63 LKGKRVIELGAGCGVAGFGMALLG-CNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSGNLLGSIQAVELDWGNEDHIK 140 (222)
Q Consensus 63 ~~~~~vLelGcG~G~~~i~la~~g-~~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~ 140 (222)
.++.+|||||||+|.+++.++..+ ++|+++|. +++++.+++|++.++. .++++...|+.+.. .
T Consensus 52 ~~~~~vLDl~~GsG~l~l~~lsr~a~~V~~vE~~~~a~~~a~~Nl~~~~~-------------~~v~~~~~D~~~~l--~ 116 (199)
T PRK10909 52 IVDARCLDCFAGSGALGLEALSRYAAGATLLEMDRAVAQQLIKNLATLKA-------------GNARVVNTNALSFL--A 116 (199)
T ss_pred cCCCEEEEcCCCccHHHHHHHHcCCCEEEEEECCHHHHHHHHHHHHHhCC-------------CcEEEEEchHHHHH--h
Confidence 356799999999999999655444 58999998 6799999999998874 26788887664321 1
Q ss_pred ccCCCccEEEEeccccCccCHHHHHHHHHHh--cCCCeEEEEEEEEc
Q 027530 141 AVAPPFDYIIGTDVVYAEHLLEPLLQTIFAL--SGPKTTILLGYEIR 185 (222)
Q Consensus 141 ~~~~~fD~Ii~~d~~y~~~~~~~ll~~~~~~--l~~~g~~~l~~~~r 185 (222)
....+||+|+++++ |.......+++.+... ++|++.+|+.+..+
T Consensus 117 ~~~~~fDlV~~DPP-y~~g~~~~~l~~l~~~~~l~~~~iv~ve~~~~ 162 (199)
T PRK10909 117 QPGTPHNVVFVDPP-FRKGLLEETINLLEDNGWLADEALIYVESEVE 162 (199)
T ss_pred hcCCCceEEEECCC-CCCChHHHHHHHHHHCCCcCCCcEEEEEecCC
Confidence 12356999999888 5667777888888774 79999999987654
No 56
>TIGR03534 RF_mod_PrmC protein-(glutamine-N5) methyltransferase, release factor-specific. Members of this protein family are HemK (PrmC), a protein once thought to be involved in heme biosynthesis but now recognized to be a protein-glutamine methyltransferase that modifies the peptide chain release factors. All members of the seed alignment are encoded next to the release factor 1 gene (prfA) and confirmed by phylogenetic analysis. SIMBAL analysis (manuscript in prep.) shows the motif [LIV]PRx[DE]TE (in Escherichia coli, IPRPDTE) confers specificity for the release factors rather than for ribosomal protein L3.
Probab=99.50 E-value=9.5e-13 Score=107.33 Aligned_cols=139 Identities=18% Similarity=0.214 Sum_probs=97.4
Q ss_pred ccchHHHHHHHHhhhccCCCCCCCCCCCCeEEEeCCCccHHHHHHHHh--CCEEEEecc-hhhHHHHHHHHHHhhccccc
Q 027530 38 VWDASVVFVKYLEKNCRKGRFCPSKLKGKRVIELGAGCGVAGFGMALL--GCNVITTDQ-IEVLPLLKRNVEWNTSRISQ 114 (222)
Q Consensus 38 ~W~~~~~la~~l~~~~~~~~~~~~~~~~~~vLelGcG~G~~~i~la~~--g~~v~~~D~-~~~l~~~~~n~~~n~~~~~~ 114 (222)
.++.+..+.+++.+.. ...+.+|||+|||+|..++.+++. +.+|+++|. +++++.+++|+..++.
T Consensus 69 p~~~~~~l~~~~l~~~--------~~~~~~ilDig~G~G~~~~~l~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~---- 136 (251)
T TIGR03534 69 PRPDTEELVEAALERL--------KKGPLRVLDLGTGSGAIALALAKERPDARVTAVDISPEALAVARKNAARLGL---- 136 (251)
T ss_pred CCCChHHHHHHHHHhc--------ccCCCeEEEEeCcHhHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHcCC----
Confidence 3455666777666542 124468999999999999999987 458999998 6699999999988763
Q ss_pred cCCCCCCCCCceEEEEeecCCCccccccCCCccEEEEeccccCccC--------------------------HHHHHHHH
Q 027530 115 MNPGSGNLLGSIQAVELDWGNEDHIKAVAPPFDYIIGTDVVYAEHL--------------------------LEPLLQTI 168 (222)
Q Consensus 115 ~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~fD~Ii~~d~~y~~~~--------------------------~~~ll~~~ 168 (222)
.++.+...|+.+.. ..++||+|++++++..... ...+++.+
T Consensus 137 ---------~~~~~~~~d~~~~~----~~~~fD~Vi~npPy~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~i~~~ 203 (251)
T TIGR03534 137 ---------DNVTFLQSDWFEPL----PGGKFDLIVSNPPYIPEADIHLLDPEVRFHEPRLALFGGEDGLDFYRRIIAQA 203 (251)
T ss_pred ---------CeEEEEECchhccC----cCCceeEEEECCCCCchhhhhhcChhhhhcCCHHHHcCCCcHHHHHHHHHHHH
Confidence 25788887765421 2578999999988653211 23577888
Q ss_pred HHhcCCCeEEEEEEEEcChhHHHHHHHHHhcCCeE
Q 027530 169 FALSGPKTTILLGYEIRSTSVHEQMLQMWKSNFNV 203 (222)
Q Consensus 169 ~~~l~~~g~~~l~~~~r~~~~~~~f~~~~~~~~~v 203 (222)
.++|+|||.+++...........++++ +.+|..
T Consensus 204 ~~~L~~gG~~~~~~~~~~~~~~~~~l~--~~gf~~ 236 (251)
T TIGR03534 204 PRLLKPGGWLLLEIGYDQGEAVRALFE--AAGFAD 236 (251)
T ss_pred HHhcccCCEEEEEECccHHHHHHHHHH--hCCCCc
Confidence 889999999998765433322233332 346643
No 57
>PRK11783 rlmL 23S rRNA m(2)G2445 methyltransferase; Provisional
Probab=99.50 E-value=2.8e-13 Score=125.33 Aligned_cols=138 Identities=20% Similarity=0.149 Sum_probs=104.8
Q ss_pred CCCeEEEeCCCccHHHHHHHHhCC-EEEEecc-hhhHHHHHHHHHHhhccccccCCCCCCCCCceEEEEeecCCCccccc
Q 027530 64 KGKRVIELGAGCGVAGFGMALLGC-NVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSGNLLGSIQAVELDWGNEDHIKA 141 (222)
Q Consensus 64 ~~~~vLelGcG~G~~~i~la~~g~-~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~ 141 (222)
+|++|||||||+|..++.+++.|+ +|+++|. +.+++.+++|++.|++. ..++++...|..+.. ..
T Consensus 538 ~g~rVLDlf~gtG~~sl~aa~~Ga~~V~~vD~s~~al~~a~~N~~~ng~~-----------~~~v~~i~~D~~~~l--~~ 604 (702)
T PRK11783 538 KGKDFLNLFAYTGTASVHAALGGAKSTTTVDMSNTYLEWAERNFALNGLS-----------GRQHRLIQADCLAWL--KE 604 (702)
T ss_pred CCCeEEEcCCCCCHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHhCCC-----------ccceEEEEccHHHHH--HH
Confidence 578999999999999999999887 5999999 56999999999999852 146888887654321 11
Q ss_pred cCCCccEEEEeccccCcc-----------CHHHHHHHHHHhcCCCeEEEEEEEEcChhHHHHHHHHH-hcCCeEEEecCC
Q 027530 142 VAPPFDYIIGTDVVYAEH-----------LLEPLLQTIFALSGPKTTILLGYEIRSTSVHEQMLQMW-KSNFNVKLVPKA 209 (222)
Q Consensus 142 ~~~~fD~Ii~~d~~y~~~-----------~~~~ll~~~~~~l~~~g~~~l~~~~r~~~~~~~f~~~~-~~~~~v~~v~~~ 209 (222)
..++||+||++++.+... .+..++..+.++|+|||.++++...+..... .+.+ +.++.+..+...
T Consensus 605 ~~~~fDlIilDPP~f~~~~~~~~~~~~~~~y~~l~~~a~~lL~~gG~l~~~~~~~~~~~~---~~~~~~~g~~~~~i~~~ 681 (702)
T PRK11783 605 AREQFDLIFIDPPTFSNSKRMEDSFDVQRDHVALIKDAKRLLRPGGTLYFSNNKRGFKMD---EEGLAKLGLKAEEITAK 681 (702)
T ss_pred cCCCcCEEEECCCCCCCCCccchhhhHHHHHHHHHHHHHHHcCCCCEEEEEeCCccCChh---HHHHHhCCCeEEEEecC
Confidence 256899999998875421 2456888888999999999887665544322 2333 458999999988
Q ss_pred CCCcccCC
Q 027530 210 KESTMWGN 217 (222)
Q Consensus 210 ~~~~~~~~ 217 (222)
..+++|-.
T Consensus 682 ~~~~Dhp~ 689 (702)
T PRK11783 682 TLPPDFAR 689 (702)
T ss_pred CCCCCCCC
Confidence 88887743
No 58
>PRK14103 trans-aconitate 2-methyltransferase; Provisional
Probab=99.49 E-value=4.2e-13 Score=110.01 Aligned_cols=96 Identities=20% Similarity=0.186 Sum_probs=77.6
Q ss_pred CCCCeEEEeCCCccHHHHHHHHh--CCEEEEecc-hhhHHHHHHHHHHhhccccccCCCCCCCCCceEEEEeecCCCccc
Q 027530 63 LKGKRVIELGAGCGVAGFGMALL--GCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSGNLLGSIQAVELDWGNEDHI 139 (222)
Q Consensus 63 ~~~~~vLelGcG~G~~~i~la~~--g~~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~ 139 (222)
.++.+|||||||+|.++..+++. +.+|+++|. +.|++.++++ ++++...|..+.
T Consensus 28 ~~~~~vLDlGcG~G~~~~~l~~~~p~~~v~gvD~s~~~~~~a~~~--------------------~~~~~~~d~~~~--- 84 (255)
T PRK14103 28 ERARRVVDLGCGPGNLTRYLARRWPGAVIEALDSSPEMVAAARER--------------------GVDARTGDVRDW--- 84 (255)
T ss_pred CCCCEEEEEcCCCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHhc--------------------CCcEEEcChhhC---
Confidence 46689999999999999999987 668999999 5699888652 234555443322
Q ss_pred cccCCCccEEEEeccccCccCHHHHHHHHHHhcCCCeEEEEEE
Q 027530 140 KAVAPPFDYIIGTDVVYAEHLLEPLLQTIFALSGPKTTILLGY 182 (222)
Q Consensus 140 ~~~~~~fD~Ii~~d~~y~~~~~~~ll~~~~~~l~~~g~~~l~~ 182 (222)
. ..++||+|+++.++++......+++.+.++|+|||.+++..
T Consensus 85 ~-~~~~fD~v~~~~~l~~~~d~~~~l~~~~~~LkpgG~l~~~~ 126 (255)
T PRK14103 85 K-PKPDTDVVVSNAALQWVPEHADLLVRWVDELAPGSWIAVQV 126 (255)
T ss_pred C-CCCCceEEEEehhhhhCCCHHHHHHHHHHhCCCCcEEEEEc
Confidence 1 24689999999999998889999999999999999998864
No 59
>TIGR00080 pimt protein-L-isoaspartate(D-aspartate) O-methyltransferase. Among the prokaryotes, the gene name is pcm. Among eukaryotes, pimt.
Probab=99.49 E-value=4.5e-13 Score=107.19 Aligned_cols=100 Identities=15% Similarity=0.145 Sum_probs=76.5
Q ss_pred CCCCCeEEEeCCCccHHHHHHHHhCC---EEEEecc-hhhHHHHHHHHHHhhccccccCCCCCCCCCceEEEEeecCCCc
Q 027530 62 KLKGKRVIELGAGCGVAGFGMALLGC---NVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSGNLLGSIQAVELDWGNED 137 (222)
Q Consensus 62 ~~~~~~vLelGcG~G~~~i~la~~g~---~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~v~~~~~d~~~~~ 137 (222)
..++.+|||+|||+|..+..+++... +|+++|. +++++.+++|++.++. .++++...|..+.
T Consensus 75 ~~~~~~VLDiG~GsG~~a~~la~~~~~~g~V~~vD~~~~~~~~A~~~~~~~g~-------------~~v~~~~~d~~~~- 140 (215)
T TIGR00080 75 LKPGMKVLEIGTGSGYQAAVLAEIVGRDGLVVSIERIPELAEKAERRLRKLGL-------------DNVIVIVGDGTQG- 140 (215)
T ss_pred CCCcCEEEEECCCccHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHCCC-------------CCeEEEECCcccC-
Confidence 45778999999999999999998754 4999998 6799999999998763 3678887665432
Q ss_pred cccccCCCccEEEEeccccCccCHHHHHHHHHHhcCCCeEEEEEEE
Q 027530 138 HIKAVAPPFDYIIGTDVVYAEHLLEPLLQTIFALSGPKTTILLGYE 183 (222)
Q Consensus 138 ~~~~~~~~fD~Ii~~d~~y~~~~~~~ll~~~~~~l~~~g~~~l~~~ 183 (222)
.....+||+|++.... ..+.+.+.+.|+|||++++...
T Consensus 141 --~~~~~~fD~Ii~~~~~------~~~~~~~~~~L~~gG~lv~~~~ 178 (215)
T TIGR00080 141 --WEPLAPYDRIYVTAAG------PKIPEALIDQLKEGGILVMPVG 178 (215)
T ss_pred --CcccCCCCEEEEcCCc------ccccHHHHHhcCcCcEEEEEEc
Confidence 1124689999987554 2344567888999999887643
No 60
>PRK13168 rumA 23S rRNA m(5)U1939 methyltransferase; Reviewed
Probab=99.49 E-value=1.4e-12 Score=114.93 Aligned_cols=145 Identities=12% Similarity=0.104 Sum_probs=102.6
Q ss_pred HHHHHHHHhhhccCCCCCCCCCCCCeEEEeCCCccHHHHHHHHhCCEEEEecc-hhhHHHHHHHHHHhhccccccCCCCC
Q 027530 42 SVVFVKYLEKNCRKGRFCPSKLKGKRVIELGAGCGVAGFGMALLGCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSG 120 (222)
Q Consensus 42 ~~~la~~l~~~~~~~~~~~~~~~~~~vLelGcG~G~~~i~la~~g~~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~ 120 (222)
+..|.+.+.+.+ ...++.+|||+|||+|..++.+++.+.+|+++|. ++|++.+++|++.|+.
T Consensus 282 ~e~l~~~vl~~l-------~~~~~~~VLDlgcGtG~~sl~la~~~~~V~gvD~s~~al~~A~~n~~~~~~---------- 344 (443)
T PRK13168 282 NQKMVARALEWL-------DPQPGDRVLDLFCGLGNFTLPLARQAAEVVGVEGVEAMVERARENARRNGL---------- 344 (443)
T ss_pred HHHHHHHHHHHh-------cCCCCCEEEEEeccCCHHHHHHHHhCCEEEEEeCCHHHHHHHHHHHHHcCC----------
Confidence 455666665542 2346689999999999999999999889999999 5699999999998874
Q ss_pred CCCCceEEEEeecCCCcc-ccccCCCccEEEEeccccCccCHHHHHHHHHHhcCCCeEEEEEEEEcChhHHHHHHHHHhc
Q 027530 121 NLLGSIQAVELDWGNEDH-IKAVAPPFDYIIGTDVVYAEHLLEPLLQTIFALSGPKTTILLGYEIRSTSVHEQMLQMWKS 199 (222)
Q Consensus 121 ~~~~~v~~~~~d~~~~~~-~~~~~~~fD~Ii~~d~~y~~~~~~~ll~~~~~~l~~~g~~~l~~~~r~~~~~~~f~~~~~~ 199 (222)
.++++...|+.+... ....+.+||+|+++++.- . ....++.+.+ ++|++.+|+++.+.... .......+.
T Consensus 345 ---~~v~~~~~d~~~~l~~~~~~~~~fD~Vi~dPPr~--g-~~~~~~~l~~-~~~~~ivyvSCnp~tla--RDl~~L~~~ 415 (443)
T PRK13168 345 ---DNVTFYHANLEEDFTDQPWALGGFDKVLLDPPRA--G-AAEVMQALAK-LGPKRIVYVSCNPATLA--RDAGVLVEA 415 (443)
T ss_pred ---CceEEEEeChHHhhhhhhhhcCCCCEEEECcCCc--C-hHHHHHHHHh-cCCCeEEEEEeChHHhh--ccHHHHhhC
Confidence 368889888764321 112245799999887752 2 3456666666 58999999998664432 233333366
Q ss_pred CCeEEEecCCCCC
Q 027530 200 NFNVKLVPKAKES 212 (222)
Q Consensus 200 ~~~v~~v~~~~~~ 212 (222)
+|+++.+.--++-
T Consensus 416 gY~l~~i~~~DmF 428 (443)
T PRK13168 416 GYRLKRAGMLDMF 428 (443)
T ss_pred CcEEEEEEEeccC
Confidence 8888766544433
No 61
>PF08003 Methyltransf_9: Protein of unknown function (DUF1698); InterPro: IPR010017 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. This entry represents a set of bacterial AdoMet-dependent tRNA (mo5U34)-methyltransferases. These enzymes catalyse the conversion of 5-hydroxyuridine (ho5U) to 5-methoxyuridine (mo5U) at the wobble position (34) of tRNA []. The 5-methoxyuridine is subsequently converted to uridine-5-oxyacetic acid, a modified nucleoside that is apparently necessary for the efficient decoding of G-ending Pro, Ala, and Val codons in these organisms [].; GO: 0016300 tRNA (uracil) methyltransferase activity, 0002098 tRNA wobble uridine modification
Probab=99.49 E-value=5e-13 Score=109.72 Aligned_cols=107 Identities=22% Similarity=0.257 Sum_probs=76.4
Q ss_pred CCCCCCeEEEeCCCccHHHHHHHHhCCE-EEEecchhhHHHHHHHHHHhhccccccCCCCCCCCCceEEEEeecCCCccc
Q 027530 61 SKLKGKRVIELGAGCGVAGFGMALLGCN-VITTDQIEVLPLLKRNVEWNTSRISQMNPGSGNLLGSIQAVELDWGNEDHI 139 (222)
Q Consensus 61 ~~~~~~~vLelGcG~G~~~i~la~~g~~-v~~~D~~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~ 139 (222)
.+++|++|||||||.|..+..++..|++ |+|+|... +-.++-.+-+.-+. ....+....+.. +.+
T Consensus 112 ~~L~gk~VLDIGC~nGY~~frM~~~GA~~ViGiDP~~-lf~~QF~~i~~~lg----------~~~~~~~lplgv---E~L 177 (315)
T PF08003_consen 112 PDLKGKRVLDIGCNNGYYSFRMLGRGAKSVIGIDPSP-LFYLQFEAIKHFLG----------QDPPVFELPLGV---EDL 177 (315)
T ss_pred CCcCCCEEEEecCCCcHHHHHHhhcCCCEEEEECCCh-HHHHHHHHHHHHhC----------CCccEEEcCcch---hhc
Confidence 4689999999999999999999999995 99999632 12222222111110 011222222222 233
Q ss_pred cccCCCccEEEEeccccCccCHHHHHHHHHHhcCCCeEEEEEE
Q 027530 140 KAVAPPFDYIIGTDVVYAEHLLEPLLQTIFALSGPKTTILLGY 182 (222)
Q Consensus 140 ~~~~~~fD~Ii~~d~~y~~~~~~~ll~~~~~~l~~~g~~~l~~ 182 (222)
+. .+.||+|++..++||..+.-..++.++..|+|||.+++-.
T Consensus 178 p~-~~~FDtVF~MGVLYHrr~Pl~~L~~Lk~~L~~gGeLvLET 219 (315)
T PF08003_consen 178 PN-LGAFDTVFSMGVLYHRRSPLDHLKQLKDSLRPGGELVLET 219 (315)
T ss_pred cc-cCCcCEEEEeeehhccCCHHHHHHHHHHhhCCCCEEEEEE
Confidence 33 5789999999999999999999999999999999998754
No 62
>TIGR00536 hemK_fam HemK family putative methylases. The gene hemK from E. coli was found to contribute to heme biosynthesis and originally suggested to be protoporphyrinogen oxidase (Medline 95189105). Functional analysis of the nearest homolog in Saccharomyces cerevisiae, YNL063w, finds it is not protoporphyrinogen oxidase and sequence analysis suggests that HemK homologs have S-adenosyl-methionine-dependent methyltransferase activity (Medline 99237242). Homologs are found, usually in a single copy, in nearly all completed genomes, but varying somewhat in apparent domain architecture. Both E. coli and H. influenzae have two members rather than one. The members from the Mycoplasmas have an additional C-terminal domain.
Probab=99.49 E-value=8.9e-13 Score=109.78 Aligned_cols=106 Identities=16% Similarity=0.225 Sum_probs=82.1
Q ss_pred CeEEEeCCCccHHHHHHHHhC--CEEEEecc-hhhHHHHHHHHHHhhccccccCCCCCCCCCceEEEEeecCCCcccccc
Q 027530 66 KRVIELGAGCGVAGFGMALLG--CNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSGNLLGSIQAVELDWGNEDHIKAV 142 (222)
Q Consensus 66 ~~vLelGcG~G~~~i~la~~g--~~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~ 142 (222)
.+|||+|||+|.+++.++... .+|+++|+ +++++.+++|+..++.. .++++...||.+.. .
T Consensus 116 ~~vLDlG~GsG~i~l~la~~~~~~~v~avDis~~al~~a~~n~~~~~~~------------~~v~~~~~d~~~~~----~ 179 (284)
T TIGR00536 116 LHILDLGTGSGCIALALAYEFPNAEVIAVDISPDALAVAEENAEKNQLE------------HRVEFIQSNLFEPL----A 179 (284)
T ss_pred CEEEEEeccHhHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHcCCC------------CcEEEEECchhccC----c
Confidence 689999999999999999874 58999999 66999999999988742 35888888876432 1
Q ss_pred CCCccEEEEeccccCcc-------------------------CHHHHHHHHHHhcCCCeEEEEEEEEcCh
Q 027530 143 APPFDYIIGTDVVYAEH-------------------------LLEPLLQTIFALSGPKTTILLGYEIRST 187 (222)
Q Consensus 143 ~~~fD~Ii~~d~~y~~~-------------------------~~~~ll~~~~~~l~~~g~~~l~~~~r~~ 187 (222)
..+||+|++++++.... ....+++.+.++|+|||.+++.......
T Consensus 180 ~~~fDlIvsNPPyi~~~~~~~~~~~~~~eP~~AL~gg~dgl~~~~~ii~~a~~~L~~gG~l~~e~g~~q~ 249 (284)
T TIGR00536 180 GQKIDIIVSNPPYIDEEDLADLPNVVRFEPLLALVGGDDGLNILRQIIELAPDYLKPNGFLVCEIGNWQQ 249 (284)
T ss_pred CCCccEEEECCCCCCcchhhcCCcccccCcHHHhcCCCcHHHHHHHHHHHHHHhccCCCEEEEEECccHH
Confidence 34799999997764321 2445778888899999998887654433
No 63
>TIGR02469 CbiT precorrin-6Y C5,15-methyltransferase (decarboxylating), CbiT subunit. This model recognizes the CbiT methylase which is responsible, in part (along with CbiE), for methylating precorrin-6y (or cobalt-precorrin-6y) at both the 5 and 15 positions as well as the concomitant decarbozylation at C-12. In many organisms, this protein is fused to the CbiE subunit. The fused protein, when found in organisms catalyzing the oxidative version of the cobalamin biosynthesis pathway, is called CobL.
Probab=99.48 E-value=2.1e-12 Score=93.76 Aligned_cols=102 Identities=25% Similarity=0.286 Sum_probs=77.8
Q ss_pred CCCCeEEEeCCCccHHHHHHHHhC--CEEEEecc-hhhHHHHHHHHHHhhccccccCCCCCCCCCceEEEEeecCCCccc
Q 027530 63 LKGKRVIELGAGCGVAGFGMALLG--CNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSGNLLGSIQAVELDWGNEDHI 139 (222)
Q Consensus 63 ~~~~~vLelGcG~G~~~i~la~~g--~~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~ 139 (222)
.++.+|||+|||+|..++.+++.. .+|+++|. +.+++.+++|++.++. .++++...+.... .
T Consensus 18 ~~~~~vldlG~G~G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~-------------~~~~~~~~~~~~~--~ 82 (124)
T TIGR02469 18 RPGDVLWDIGAGSGSITIEAARLVPNGRVYAIERNPEALRLIERNARRFGV-------------SNIVIVEGDAPEA--L 82 (124)
T ss_pred CCCCEEEEeCCCCCHHHHHHHHHCCCceEEEEcCCHHHHHHHHHHHHHhCC-------------CceEEEecccccc--C
Confidence 356799999999999999999863 57999999 5699999999987753 2566665443321 1
Q ss_pred cccCCCccEEEEeccccCccCHHHHHHHHHHhcCCCeEEEEEE
Q 027530 140 KAVAPPFDYIIGTDVVYAEHLLEPLLQTIFALSGPKTTILLGY 182 (222)
Q Consensus 140 ~~~~~~fD~Ii~~d~~y~~~~~~~ll~~~~~~l~~~g~~~l~~ 182 (222)
....++||+|++.... .....+++.+.+.|+|||.+++..
T Consensus 83 ~~~~~~~D~v~~~~~~---~~~~~~l~~~~~~Lk~gG~li~~~ 122 (124)
T TIGR02469 83 EDSLPEPDRVFIGGSG---GLLQEILEAIWRRLRPGGRIVLNA 122 (124)
T ss_pred hhhcCCCCEEEECCcc---hhHHHHHHHHHHHcCCCCEEEEEe
Confidence 1224689999986543 345689999999999999998864
No 64
>PRK05134 bifunctional 3-demethylubiquinone-9 3-methyltransferase/ 2-octaprenyl-6-hydroxy phenol methylase; Provisional
Probab=99.48 E-value=7.5e-13 Score=107.00 Aligned_cols=118 Identities=18% Similarity=0.220 Sum_probs=92.2
Q ss_pred HHHHHHhhhccCCCCCCCCCCCCeEEEeCCCccHHHHHHHHhCCEEEEecc-hhhHHHHHHHHHHhhccccccCCCCCCC
Q 027530 44 VFVKYLEKNCRKGRFCPSKLKGKRVIELGAGCGVAGFGMALLGCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSGNL 122 (222)
Q Consensus 44 ~la~~l~~~~~~~~~~~~~~~~~~vLelGcG~G~~~i~la~~g~~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~ 122 (222)
...+|+... ....++++|||||||+|..+..+++.+++|+++|. +++++.+++++..++.
T Consensus 35 ~~~~~l~~~-------~~~~~~~~vLdiG~G~G~~~~~l~~~~~~v~~iD~s~~~~~~a~~~~~~~~~------------ 95 (233)
T PRK05134 35 LRLNYIREH-------AGGLFGKRVLDVGCGGGILSESMARLGADVTGIDASEENIEVARLHALESGL------------ 95 (233)
T ss_pred HHHHHHHHh-------ccCCCCCeEEEeCCCCCHHHHHHHHcCCeEEEEcCCHHHHHHHHHHHHHcCC------------
Confidence 444566554 23457889999999999999999999999999999 5689999988876542
Q ss_pred CCceEEEEeecCCCccccccCCCccEEEEeccccCccCHHHHHHHHHHhcCCCeEEEEEEEE
Q 027530 123 LGSIQAVELDWGNEDHIKAVAPPFDYIIGTDVVYAEHLLEPLLQTIFALSGPKTTILLGYEI 184 (222)
Q Consensus 123 ~~~v~~~~~d~~~~~~~~~~~~~fD~Ii~~d~~y~~~~~~~ll~~~~~~l~~~g~~~l~~~~ 184 (222)
.+.+...++.+... ...++||+|+++.++.+......+++.+.++|+|+|.++++...
T Consensus 96 --~~~~~~~~~~~~~~--~~~~~fD~Ii~~~~l~~~~~~~~~l~~~~~~L~~gG~l~v~~~~ 153 (233)
T PRK05134 96 --KIDYRQTTAEELAA--EHPGQFDVVTCMEMLEHVPDPASFVRACAKLVKPGGLVFFSTLN 153 (233)
T ss_pred --ceEEEecCHHHhhh--hcCCCccEEEEhhHhhccCCHHHHHHHHHHHcCCCcEEEEEecC
Confidence 45566555543321 13468999999999988888899999999999999999987654
No 65
>TIGR00095 RNA methyltransferase, RsmD family. This model represents a family of uncharacterized bacterial proteins. Members are present in nearly every complete bacterial genome, always in a single copy. PSI-BLAST analysis shows homology to several families of SAM-dependent methyltransferases, including ribosomal RNA adenine dimethylases.
Probab=99.48 E-value=6.3e-13 Score=104.20 Aligned_cols=111 Identities=19% Similarity=0.197 Sum_probs=80.0
Q ss_pred CCCCCeEEEeCCCccHHHHHHHHhCC-EEEEecc-hhhHHHHHHHHHHhhccccccCCCCCCCCCceEEEEeecCCCccc
Q 027530 62 KLKGKRVIELGAGCGVAGFGMALLGC-NVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSGNLLGSIQAVELDWGNEDHI 139 (222)
Q Consensus 62 ~~~~~~vLelGcG~G~~~i~la~~g~-~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~ 139 (222)
..+|++||||+||+|.+|+.++.+|+ +|+++|. +++++.+++|++.|+.. .++++...|..+....
T Consensus 47 ~~~g~~vLDLfaGsG~lglea~srga~~v~~vE~~~~a~~~~~~N~~~~~~~------------~~~~~~~~D~~~~l~~ 114 (189)
T TIGR00095 47 EIQGAHLLDVFAGSGLLGEEALSRGAKVAFLEEDDRKANQTLKENLALLKSG------------EQAEVVRNSALRALKF 114 (189)
T ss_pred hcCCCEEEEecCCCcHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHhCCc------------ccEEEEehhHHHHHHH
Confidence 45788999999999999999999998 6999999 56999999999998742 3577777665332111
Q ss_pred cccCCCccEEEEeccccCccCHHHHHHHHHH--hcCCCeEEEEEEEE
Q 027530 140 KAVAPPFDYIIGTDVVYAEHLLEPLLQTIFA--LSGPKTTILLGYEI 184 (222)
Q Consensus 140 ~~~~~~fD~Ii~~d~~y~~~~~~~ll~~~~~--~l~~~g~~~l~~~~ 184 (222)
.....+++.||..|+.|.......++..+.. +++++|.+++-+..
T Consensus 115 ~~~~~~~~dvv~~DPPy~~~~~~~~l~~l~~~~~l~~~~iiv~E~~~ 161 (189)
T TIGR00095 115 LAKKPTFDNVIYLDPPFFNGALQALLELCENNWILEDTVLIVVEEDR 161 (189)
T ss_pred hhccCCCceEEEECcCCCCCcHHHHHHHHHHCCCCCCCeEEEEEecC
Confidence 1112334444456666776777777777755 58888877765544
No 66
>PRK00121 trmB tRNA (guanine-N(7)-)-methyltransferase; Reviewed
Probab=99.47 E-value=3.6e-13 Score=106.75 Aligned_cols=125 Identities=14% Similarity=-0.033 Sum_probs=89.4
Q ss_pred CCCeEEEeCCCccHHHHHHHHhC--CEEEEecc-hhhHHHHHHHHHHhhccccccCCCCCCCCCceEEEEeec-CCCccc
Q 027530 64 KGKRVIELGAGCGVAGFGMALLG--CNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSGNLLGSIQAVELDW-GNEDHI 139 (222)
Q Consensus 64 ~~~~vLelGcG~G~~~i~la~~g--~~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~v~~~~~d~-~~~~~~ 139 (222)
.+.+|||+|||+|..++.+++.. .+|+++|. +++++.+++|+..++. .++.+...|+ .... .
T Consensus 40 ~~~~VLDiGcGtG~~~~~la~~~p~~~v~gVD~s~~~i~~a~~~~~~~~~-------------~~v~~~~~d~~~~l~-~ 105 (202)
T PRK00121 40 DAPIHLEIGFGKGEFLVEMAKANPDINFIGIEVHEPGVGKALKKIEEEGL-------------TNLRLLCGDAVEVLL-D 105 (202)
T ss_pred CCCeEEEEccCCCHHHHHHHHHCCCccEEEEEechHHHHHHHHHHHHcCC-------------CCEEEEecCHHHHHH-H
Confidence 56789999999999999988763 47999999 6699999999987763 3688888666 3211 1
Q ss_pred cccCCCccEEEEeccccCcc--------CHHHHHHHHHHhcCCCeEEEEEEEEcChhHHHHHHHHHh-cCCeEE
Q 027530 140 KAVAPPFDYIIGTDVVYAEH--------LLEPLLQTIFALSGPKTTILLGYEIRSTSVHEQMLQMWK-SNFNVK 204 (222)
Q Consensus 140 ~~~~~~fD~Ii~~d~~y~~~--------~~~~ll~~~~~~l~~~g~~~l~~~~r~~~~~~~f~~~~~-~~~~v~ 204 (222)
...+.+||.|+++.+..+.. ....+++.+.++|+|||.++++...+. .....++.++ .++.++
T Consensus 106 ~~~~~~~D~V~~~~~~p~~~~~~~~~~~~~~~~l~~i~~~LkpgG~l~i~~~~~~--~~~~~~~~~~~~g~~~~ 177 (202)
T PRK00121 106 MFPDGSLDRIYLNFPDPWPKKRHHKRRLVQPEFLALYARKLKPGGEIHFATDWEG--YAEYMLEVLSAEGGFLV 177 (202)
T ss_pred HcCccccceEEEECCCCCCCccccccccCCHHHHHHHHHHcCCCCEEEEEcCCHH--HHHHHHHHHHhCccccc
Confidence 12356899999874432211 247799999999999999999875433 2345555553 465544
No 67
>PRK15451 tRNA cmo(5)U34 methyltransferase; Provisional
Probab=99.47 E-value=8.2e-13 Score=107.85 Aligned_cols=105 Identities=16% Similarity=0.253 Sum_probs=82.6
Q ss_pred CCCeEEEeCCCccHHHHHHHHh----CCEEEEecc-hhhHHHHHHHHHHhhccccccCCCCCCCCCceEEEEeecCCCcc
Q 027530 64 KGKRVIELGAGCGVAGFGMALL----GCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSGNLLGSIQAVELDWGNEDH 138 (222)
Q Consensus 64 ~~~~vLelGcG~G~~~i~la~~----g~~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~ 138 (222)
++.+|||||||+|..++.+++. +.+|+++|. ++|++.+++++..++. ..++++...+..+.
T Consensus 56 ~~~~vLDlGcGtG~~~~~l~~~~~~~~~~v~gvD~S~~ml~~A~~~~~~~~~------------~~~v~~~~~d~~~~-- 121 (247)
T PRK15451 56 PGTQVYDLGCSLGAATLSVRRNIHHDNCKIIAIDNSPAMIERCRRHIDAYKA------------PTPVDVIEGDIRDI-- 121 (247)
T ss_pred CCCEEEEEcccCCHHHHHHHHhcCCCCCeEEEEeCCHHHHHHHHHHHHhcCC------------CCCeEEEeCChhhC--
Confidence 5679999999999999888762 468999999 6699999999987653 24678887665432
Q ss_pred ccccCCCccEEEEeccccCcc--CHHHHHHHHHHhcCCCeEEEEEEEEc
Q 027530 139 IKAVAPPFDYIIGTDVVYAEH--LLEPLLQTIFALSGPKTTILLGYEIR 185 (222)
Q Consensus 139 ~~~~~~~fD~Ii~~d~~y~~~--~~~~ll~~~~~~l~~~g~~~l~~~~r 185 (222)
+ .+.+|+|+++-++++.+ ....+++.+.+.|+|||.++++...+
T Consensus 122 -~--~~~~D~vv~~~~l~~l~~~~~~~~l~~i~~~LkpGG~l~l~e~~~ 167 (247)
T PRK15451 122 -A--IENASMVVLNFTLQFLEPSERQALLDKIYQGLNPGGALVLSEKFS 167 (247)
T ss_pred -C--CCCCCEEehhhHHHhCCHHHHHHHHHHHHHhcCCCCEEEEEEecC
Confidence 2 24599999988876643 34679999999999999999987543
No 68
>PLN02490 MPBQ/MSBQ methyltransferase
Probab=99.46 E-value=1.6e-12 Score=110.10 Aligned_cols=101 Identities=15% Similarity=0.100 Sum_probs=80.6
Q ss_pred CCCeEEEeCCCccHHHHHHHHh--CCEEEEecc-hhhHHHHHHHHHHhhccccccCCCCCCCCCceEEEEeecCCCcccc
Q 027530 64 KGKRVIELGAGCGVAGFGMALL--GCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSGNLLGSIQAVELDWGNEDHIK 140 (222)
Q Consensus 64 ~~~~vLelGcG~G~~~i~la~~--g~~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~ 140 (222)
++.+|||||||+|..++.+++. +.+|+++|. +++++.++++... .++++...|..+ .+
T Consensus 113 ~~~~VLDLGcGtG~~~l~La~~~~~~~VtgVD~S~~mL~~A~~k~~~----------------~~i~~i~gD~e~---lp 173 (340)
T PLN02490 113 RNLKVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEPL----------------KECKIIEGDAED---LP 173 (340)
T ss_pred CCCEEEEEecCCcHHHHHHHHHCCCCEEEEEECCHHHHHHHHHhhhc----------------cCCeEEeccHHh---CC
Confidence 5679999999999999888765 358999999 5699999887542 245666655432 33
Q ss_pred ccCCCccEEEEeccccCccCHHHHHHHHHHhcCCCeEEEEEEE
Q 027530 141 AVAPPFDYIIGTDVVYAEHLLEPLLQTIFALSGPKTTILLGYE 183 (222)
Q Consensus 141 ~~~~~fD~Ii~~d~~y~~~~~~~ll~~~~~~l~~~g~~~l~~~ 183 (222)
..++.||+|+++.++++......+++.+.++|+|||.+++...
T Consensus 174 ~~~~sFDvVIs~~~L~~~~d~~~~L~e~~rvLkPGG~LvIi~~ 216 (340)
T PLN02490 174 FPTDYADRYVSAGSIEYWPDPQRGIKEAYRVLKIGGKACLIGP 216 (340)
T ss_pred CCCCceeEEEEcChhhhCCCHHHHHHHHHHhcCCCcEEEEEEe
Confidence 3467899999999998888888999999999999999987654
No 69
>PRK00377 cbiT cobalt-precorrin-6Y C(15)-methyltransferase; Provisional
Probab=99.46 E-value=3.5e-12 Score=100.73 Aligned_cols=124 Identities=19% Similarity=0.260 Sum_probs=88.4
Q ss_pred CCCCCCeEEEeCCCccHHHHHHHHh-C--CEEEEecc-hhhHHHHHHHHHHhhccccccCCCCCCCCCceEEEEeecCCC
Q 027530 61 SKLKGKRVIELGAGCGVAGFGMALL-G--CNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSGNLLGSIQAVELDWGNE 136 (222)
Q Consensus 61 ~~~~~~~vLelGcG~G~~~i~la~~-g--~~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~v~~~~~d~~~~ 136 (222)
...++.+|||+|||+|..++.+++. + .+|+++|. +++++.+++|++.+++. .++.+...|..+.
T Consensus 37 ~~~~~~~vlDlG~GtG~~s~~~a~~~~~~~~v~avD~~~~~~~~a~~n~~~~g~~------------~~v~~~~~d~~~~ 104 (198)
T PRK00377 37 RLRKGDMILDIGCGTGSVTVEASLLVGETGKVYAVDKDEKAINLTRRNAEKFGVL------------NNIVLIKGEAPEI 104 (198)
T ss_pred CCCCcCEEEEeCCcCCHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHhCCC------------CCeEEEEechhhh
Confidence 3557789999999999999998865 3 47999999 67999999999987632 4677776555432
Q ss_pred ccccccCCCccEEEEeccccCccCHHHHHHHHHHhcCCCeEEEEEEEEcChhHHHHHHHHHh-cCCeE
Q 027530 137 DHIKAVAPPFDYIIGTDVVYAEHLLEPLLQTIFALSGPKTTILLGYEIRSTSVHEQMLQMWK-SNFNV 203 (222)
Q Consensus 137 ~~~~~~~~~fD~Ii~~d~~y~~~~~~~ll~~~~~~l~~~g~~~l~~~~r~~~~~~~f~~~~~-~~~~v 203 (222)
.+...++||.|+++. .......+++.+.++|+|||++++... ......+..+.++ .+|.+
T Consensus 105 --l~~~~~~~D~V~~~~---~~~~~~~~l~~~~~~LkpgG~lv~~~~--~~~~~~~~~~~l~~~g~~~ 165 (198)
T PRK00377 105 --LFTINEKFDRIFIGG---GSEKLKEIISASWEIIKKGGRIVIDAI--LLETVNNALSALENIGFNL 165 (198)
T ss_pred --HhhcCCCCCEEEECC---CcccHHHHHHHHHHHcCCCcEEEEEee--cHHHHHHHHHHHHHcCCCe
Confidence 122246899999853 234567899999999999999876332 2223345555553 46644
No 70
>PRK01544 bifunctional N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase/tRNA (m7G46) methyltransferase; Reviewed
Probab=99.46 E-value=3.7e-12 Score=113.71 Aligned_cols=106 Identities=21% Similarity=0.311 Sum_probs=80.3
Q ss_pred CCCeEEEeCCCccHHHHHHHHh--CCEEEEecc-hhhHHHHHHHHHHhhccccccCCCCCCCCCceEEEEeecCCCcccc
Q 027530 64 KGKRVIELGAGCGVAGFGMALL--GCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSGNLLGSIQAVELDWGNEDHIK 140 (222)
Q Consensus 64 ~~~~vLelGcG~G~~~i~la~~--g~~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~ 140 (222)
++.+|||+|||+|.+++.++.. +++|+++|+ +++++.+++|+..+++. .++.+...||.+..
T Consensus 138 ~~~~VLDlG~GsG~iai~la~~~p~~~v~avDis~~al~~A~~N~~~~~l~------------~~v~~~~~D~~~~~--- 202 (506)
T PRK01544 138 KFLNILELGTGSGCIAISLLCELPNANVIATDISLDAIEVAKSNAIKYEVT------------DRIQIIHSNWFENI--- 202 (506)
T ss_pred CCCEEEEccCchhHHHHHHHHHCCCCeEEEEECCHHHHHHHHHHHHHcCCc------------cceeeeecchhhhC---
Confidence 3468999999999999988865 468999999 56999999999887642 46788887764321
Q ss_pred ccCCCccEEEEeccccCcc--------------------------CHHHHHHHHHHhcCCCeEEEEEEEEc
Q 027530 141 AVAPPFDYIIGTDVVYAEH--------------------------LLEPLLQTIFALSGPKTTILLGYEIR 185 (222)
Q Consensus 141 ~~~~~fD~Ii~~d~~y~~~--------------------------~~~~ll~~~~~~l~~~g~~~l~~~~r 185 (222)
...+||+|++++++.... .+..+++.+.++|+|||.+++.....
T Consensus 203 -~~~~fDlIvsNPPYi~~~~~~~l~~~v~~~EP~~AL~gg~dGl~~~~~il~~a~~~L~~gG~l~lEig~~ 272 (506)
T PRK01544 203 -EKQKFDFIVSNPPYISHSEKSEMAIETINYEPSIALFAEEDGLQAYFIIAENAKQFLKPNGKIILEIGFK 272 (506)
T ss_pred -cCCCccEEEECCCCCCchhhhhcCchhhccCcHHHhcCCccHHHHHHHHHHHHHHhccCCCEEEEEECCc
Confidence 245899999998764311 13446677788999999998865443
No 71
>PRK09328 N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase; Provisional
Probab=99.45 E-value=4.6e-12 Score=104.83 Aligned_cols=136 Identities=18% Similarity=0.249 Sum_probs=94.9
Q ss_pred chHHHHHHHHhhhccCCCCCCCCCCCCeEEEeCCCccHHHHHHHHhC--CEEEEecc-hhhHHHHHHHHHHhhccccccC
Q 027530 40 DASVVFVKYLEKNCRKGRFCPSKLKGKRVIELGAGCGVAGFGMALLG--CNVITTDQ-IEVLPLLKRNVEWNTSRISQMN 116 (222)
Q Consensus 40 ~~~~~la~~l~~~~~~~~~~~~~~~~~~vLelGcG~G~~~i~la~~g--~~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~ 116 (222)
+.+..+.+++... ....++.+|||+|||+|..++.++... .+|+++|. +++++.+++|+. +..
T Consensus 91 ~~te~l~~~~~~~-------~~~~~~~~vLDiG~GsG~~~~~la~~~~~~~v~~iDis~~~l~~a~~n~~-~~~------ 156 (275)
T PRK09328 91 PETEELVEWALEA-------LLLKEPLRVLDLGTGSGAIALALAKERPDAEVTAVDISPEALAVARRNAK-HGL------ 156 (275)
T ss_pred CCcHHHHHHHHHh-------ccccCCCEEEEEcCcHHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHH-hCC------
Confidence 3456777776643 233456799999999999999999875 57999999 569999999988 221
Q ss_pred CCCCCCCCceEEEEeecCCCccccccCCCccEEEEeccccCcc--------------------------CHHHHHHHHHH
Q 027530 117 PGSGNLLGSIQAVELDWGNEDHIKAVAPPFDYIIGTDVVYAEH--------------------------LLEPLLQTIFA 170 (222)
Q Consensus 117 ~~~~~~~~~v~~~~~d~~~~~~~~~~~~~fD~Ii~~d~~y~~~--------------------------~~~~ll~~~~~ 170 (222)
..++.+...|+.+.. ...+||+|++++++.... .+..+++.+.+
T Consensus 157 ------~~~i~~~~~d~~~~~----~~~~fD~Iv~npPy~~~~~~~~~~~~v~~~ep~~al~~g~~g~~~~~~~~~~~~~ 226 (275)
T PRK09328 157 ------GARVEFLQGDWFEPL----PGGRFDLIVSNPPYIPEADIHLLQPEVRDHEPHLALFGGEDGLDFYRRIIEQAPR 226 (275)
T ss_pred ------CCcEEEEEccccCcC----CCCceeEEEECCCcCCcchhhhCCchhhhcCCchhhcCCCCHHHHHHHHHHHHHH
Confidence 247888887774321 146899999988764321 13457777789
Q ss_pred hcCCCeEEEEEEEEcChhHHHHHHHHH-hcCCe
Q 027530 171 LSGPKTTILLGYEIRSTSVHEQMLQMW-KSNFN 202 (222)
Q Consensus 171 ~l~~~g~~~l~~~~r~~~~~~~f~~~~-~~~~~ 202 (222)
+|+|||.+++....... ..+.+.+ +.+|.
T Consensus 227 ~Lk~gG~l~~e~g~~~~---~~~~~~l~~~gf~ 256 (275)
T PRK09328 227 YLKPGGWLLLEIGYDQG---EAVRALLAAAGFA 256 (275)
T ss_pred hcccCCEEEEEECchHH---HHHHHHHHhCCCc
Confidence 99999999886544332 2333333 34664
No 72
>PRK13944 protein-L-isoaspartate O-methyltransferase; Provisional
Probab=99.45 E-value=2.9e-12 Score=101.80 Aligned_cols=101 Identities=20% Similarity=0.196 Sum_probs=76.0
Q ss_pred CCCCCeEEEeCCCccHHHHHHHHh---CCEEEEecc-hhhHHHHHHHHHHhhccccccCCCCCCCCCceEEEEeecCCCc
Q 027530 62 KLKGKRVIELGAGCGVAGFGMALL---GCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSGNLLGSIQAVELDWGNED 137 (222)
Q Consensus 62 ~~~~~~vLelGcG~G~~~i~la~~---g~~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~v~~~~~d~~~~~ 137 (222)
..++.+|||+|||+|..+..+++. +.+|+++|. +++++.+++|+..++.. .++++...|..+.
T Consensus 70 ~~~~~~VLDiG~GsG~~~~~la~~~~~~g~V~~iD~~~~~~~~a~~~l~~~~~~------------~~v~~~~~d~~~~- 136 (205)
T PRK13944 70 PRPGMKILEVGTGSGYQAAVCAEAIERRGKVYTVEIVKELAIYAAQNIERLGYW------------GVVEVYHGDGKRG- 136 (205)
T ss_pred CCCCCEEEEECcCccHHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHHcCCC------------CcEEEEECCcccC-
Confidence 346789999999999999888875 358999999 67999999999877632 3577777555432
Q ss_pred cccccCCCccEEEEeccccCccCHHHHHHHHHHhcCCCeEEEEEEE
Q 027530 138 HIKAVAPPFDYIIGTDVVYAEHLLEPLLQTIFALSGPKTTILLGYE 183 (222)
Q Consensus 138 ~~~~~~~~fD~Ii~~d~~y~~~~~~~ll~~~~~~l~~~g~~~l~~~ 183 (222)
.....+||+|+++..+. .+.+.+.+.|+|||++++...
T Consensus 137 --~~~~~~fD~Ii~~~~~~------~~~~~l~~~L~~gG~lvi~~~ 174 (205)
T PRK13944 137 --LEKHAPFDAIIVTAAAS------TIPSALVRQLKDGGVLVIPVE 174 (205)
T ss_pred --CccCCCccEEEEccCcc------hhhHHHHHhcCcCcEEEEEEc
Confidence 12246899999887653 233567788999999887653
No 73
>PRK11805 N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase; Provisional
Probab=99.45 E-value=2.4e-12 Score=108.10 Aligned_cols=103 Identities=16% Similarity=0.221 Sum_probs=80.1
Q ss_pred CeEEEeCCCccHHHHHHHHh--CCEEEEecc-hhhHHHHHHHHHHhhccccccCCCCCCCCCceEEEEeecCCCcccccc
Q 027530 66 KRVIELGAGCGVAGFGMALL--GCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSGNLLGSIQAVELDWGNEDHIKAV 142 (222)
Q Consensus 66 ~~vLelGcG~G~~~i~la~~--g~~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~ 142 (222)
.+|||+|||+|.+++.++.. +.+|+++|+ +++++.+++|++.+++. .++++...|+.+. . .
T Consensus 135 ~~VLDlG~GsG~iai~la~~~p~~~V~avDis~~al~~A~~n~~~~~l~------------~~i~~~~~D~~~~--l--~ 198 (307)
T PRK11805 135 TRILDLCTGSGCIAIACAYAFPDAEVDAVDISPDALAVAEINIERHGLE------------DRVTLIESDLFAA--L--P 198 (307)
T ss_pred CEEEEEechhhHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHhCCC------------CcEEEEECchhhh--C--C
Confidence 68999999999999999987 458999999 66999999999988742 4688888776432 1 2
Q ss_pred CCCccEEEEeccccCcc-------------------------CHHHHHHHHHHhcCCCeEEEEEEEE
Q 027530 143 APPFDYIIGTDVVYAEH-------------------------LLEPLLQTIFALSGPKTTILLGYEI 184 (222)
Q Consensus 143 ~~~fD~Ii~~d~~y~~~-------------------------~~~~ll~~~~~~l~~~g~~~l~~~~ 184 (222)
..+||+|++++++.... ....+++.+.++|+|||.+++....
T Consensus 199 ~~~fDlIvsNPPyi~~~~~~~l~~~~~~eP~~AL~gg~dGl~~~~~i~~~a~~~L~pgG~l~~E~g~ 265 (307)
T PRK11805 199 GRRYDLIVSNPPYVDAEDMADLPAEYRHEPELALAAGDDGLDLVRRILAEAPDYLTEDGVLVVEVGN 265 (307)
T ss_pred CCCccEEEECCCCCCccchhhcCHhhccCccceeeCCCchHHHHHHHHHHHHHhcCCCCEEEEEECc
Confidence 35799999998753211 1356788888899999999886543
No 74
>KOG1499 consensus Protein arginine N-methyltransferase PRMT1 and related enzymes [Posttranslational modification, protein turnover, chaperones; Transcription; Signal transduction mechanisms]
Probab=99.44 E-value=4.4e-13 Score=111.53 Aligned_cols=105 Identities=17% Similarity=0.207 Sum_probs=86.9
Q ss_pred CCCCCCCeEEEeCCCccHHHHHHHHhCC-EEEEecchhhHHHHHHHHHHhhccccccCCCCCCCCCceEEEEeecCCCcc
Q 027530 60 PSKLKGKRVIELGAGCGVAGFGMALLGC-NVITTDQIEVLPLLKRNVEWNTSRISQMNPGSGNLLGSIQAVELDWGNEDH 138 (222)
Q Consensus 60 ~~~~~~~~vLelGcG~G~~~i~la~~g~-~v~~~D~~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~ 138 (222)
...+++++|||+|||+|.+++.+|+.|+ +|+++|.+++.+.+++.+..|++. ..|++.+....+. +
T Consensus 56 ~~lf~dK~VlDVGcGtGILS~F~akAGA~~V~aVe~S~ia~~a~~iv~~N~~~------------~ii~vi~gkvEdi-~ 122 (346)
T KOG1499|consen 56 KHLFKDKTVLDVGCGTGILSMFAAKAGARKVYAVEASSIADFARKIVKDNGLE------------DVITVIKGKVEDI-E 122 (346)
T ss_pred hhhcCCCEEEEcCCCccHHHHHHHHhCcceEEEEechHHHHHHHHHHHhcCcc------------ceEEEeecceEEE-e
Confidence 4679999999999999999999999999 599999999889999999999864 4688888666554 2
Q ss_pred ccccCCCccEEEEecc---ccCccCHHHHHHHHHHhcCCCeEEE
Q 027530 139 IKAVAPPFDYIIGTDV---VYAEHLLEPLLQTIFALSGPKTTIL 179 (222)
Q Consensus 139 ~~~~~~~fD~Ii~~d~---~y~~~~~~~ll~~~~~~l~~~g~~~ 179 (222)
+ +.++.|+|++--. +++.+.+..++-+-.+.|+|||.+|
T Consensus 123 L--P~eKVDiIvSEWMGy~Ll~EsMldsVl~ARdkwL~~~G~i~ 164 (346)
T KOG1499|consen 123 L--PVEKVDIIVSEWMGYFLLYESMLDSVLYARDKWLKEGGLIY 164 (346)
T ss_pred c--CccceeEEeehhhhHHHHHhhhhhhhhhhhhhccCCCceEc
Confidence 2 2689999997544 3446778888888888999999765
No 75
>COG1092 Predicted SAM-dependent methyltransferases [General function prediction only]
Probab=99.44 E-value=3.1e-12 Score=109.75 Aligned_cols=178 Identities=18% Similarity=0.095 Sum_probs=122.2
Q ss_pred EEEeEcCeEEEEeeCCC-CccccccccchHHHHHHHHhhhccCCCCCCCCCCCCeEEEeCCCccHHHHHHHHhCC-EEEE
Q 027530 14 INLEVLGHQLQFSQDPN-SKHLGTTVWDASVVFVKYLEKNCRKGRFCPSKLKGKRVIELGAGCGVAGFGMALLGC-NVIT 91 (222)
Q Consensus 14 ~~~~~~~~~~~i~q~~~-~~~~g~~~W~~~~~la~~l~~~~~~~~~~~~~~~~~~vLelGcG~G~~~i~la~~g~-~v~~ 91 (222)
-.+.+.++...+.-+.. +-.||..+|- ...-+++.. ..+|++||++.|-||..|+.+|..|| +||.
T Consensus 178 ~~~~i~E~g~kf~v~~~~g~kTGfFlDq--R~~R~~l~~----------~~~GkrvLNlFsYTGgfSv~Aa~gGA~~vt~ 245 (393)
T COG1092 178 EEVVIEENGVKFLVDLVDGLKTGFFLDQ--RDNRRALGE----------LAAGKRVLNLFSYTGGFSVHAALGGASEVTS 245 (393)
T ss_pred CcEEEEeCCeEEEEecCCcccceeeHHh--HHHHHHHhh----------hccCCeEEEecccCcHHHHHHHhcCCCceEE
Confidence 34445555555555553 4456655443 233334432 33589999999999999999999999 7999
Q ss_pred ecchh-hHHHHHHHHHHhhccccccCCCCCCCCCceEEEEeecCCCcc-ccccCCCccEEEEeccccCc---------cC
Q 027530 92 TDQIE-VLPLLKRNVEWNTSRISQMNPGSGNLLGSIQAVELDWGNEDH-IKAVAPPFDYIIGTDVVYAE---------HL 160 (222)
Q Consensus 92 ~D~~~-~l~~~~~n~~~n~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~-~~~~~~~fD~Ii~~d~~y~~---------~~ 160 (222)
+|.+. +++.+++|++.|++. ..++.+++.|.-+... ......+||+||.-+|-|.. .+
T Consensus 246 VD~S~~al~~a~~N~~LNg~~-----------~~~~~~i~~Dvf~~l~~~~~~g~~fDlIilDPPsF~r~k~~~~~~~rd 314 (393)
T COG1092 246 VDLSKRALEWARENAELNGLD-----------GDRHRFIVGDVFKWLRKAERRGEKFDLIILDPPSFARSKKQEFSAQRD 314 (393)
T ss_pred EeccHHHHHHHHHHHHhcCCC-----------ccceeeehhhHHHHHHHHHhcCCcccEEEECCcccccCcccchhHHHH
Confidence 99955 999999999999964 3456676644332211 11224599999999988763 24
Q ss_pred HHHHHHHHHHhcCCCeEEEEEEEEcChhHHHHHHHHH-----hcCCeEEEecCCCCCccc
Q 027530 161 LEPLLQTIFALSGPKTTILLGYEIRSTSVHEQMLQMW-----KSNFNVKLVPKAKESTMW 215 (222)
Q Consensus 161 ~~~ll~~~~~~l~~~g~~~l~~~~r~~~~~~~f~~~~-----~~~~~v~~v~~~~~~~~~ 215 (222)
+..++..+.++|+|||.++++.-.+.-. ...|.+.+ ..+..+..+.....++++
T Consensus 315 y~~l~~~~~~iL~pgG~l~~~s~~~~~~-~~~f~~~i~~a~~~~~~~~~~~~~~~~~~D~ 373 (393)
T COG1092 315 YKDLNDLALRLLAPGGTLVTSSCSRHFS-SDLFLEIIARAAAAAGRRAQEIEGEGQPPDH 373 (393)
T ss_pred HHHHHHHHHHHcCCCCEEEEEecCCccC-HHHHHHHHHHHHHhcCCcEEEeeccCCCCCc
Confidence 6678888899999999998887655443 23444433 235677777777777776
No 76
>TIGR00740 methyltransferase, putative. A simple BLAST search finds all members of this family and weaker hits to a large number of known and predicted methyltransferases. A single iteration with PSI-BLAST, keeping only clear members of the family, leads to a large number of highly significant hits to a set of known and predicted methyltransferases with a large repertoire of different specifities. This model is restricted to a subfamily found so far only in the Proteobacteria, sharing consistent length, full-length homology, and on average better than 35 % identity. It is reasonable to predict equivalent function within this subfamily.
Probab=99.44 E-value=1.6e-12 Score=105.63 Aligned_cols=106 Identities=15% Similarity=0.122 Sum_probs=83.3
Q ss_pred CCCeEEEeCCCccHHHHHHHHh----CCEEEEecc-hhhHHHHHHHHHHhhccccccCCCCCCCCCceEEEEeecCCCcc
Q 027530 64 KGKRVIELGAGCGVAGFGMALL----GCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSGNLLGSIQAVELDWGNEDH 138 (222)
Q Consensus 64 ~~~~vLelGcG~G~~~i~la~~----g~~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~ 138 (222)
++.+|||+|||+|..+..+++. +.+|+++|. ++|++.+++++...+. ..++++...|+.+..
T Consensus 53 ~~~~iLDlGcG~G~~~~~l~~~~~~p~~~v~gvD~s~~ml~~a~~~~~~~~~------------~~~v~~~~~d~~~~~- 119 (239)
T TIGR00740 53 PDSNVYDLGCSRGAATLSARRNINQPNVKIIGIDNSQPMVERCRQHIAAYHS------------EIPVEILCNDIRHVE- 119 (239)
T ss_pred CCCEEEEecCCCCHHHHHHHHhcCCCCCeEEEEeCCHHHHHHHHHHHHhcCC------------CCCeEEEECChhhCC-
Confidence 6679999999999999988874 468999999 6699999999875431 236788886665432
Q ss_pred ccccCCCccEEEEeccccCcc--CHHHHHHHHHHhcCCCeEEEEEEEEcC
Q 027530 139 IKAVAPPFDYIIGTDVVYAEH--LLEPLLQTIFALSGPKTTILLGYEIRS 186 (222)
Q Consensus 139 ~~~~~~~fD~Ii~~d~~y~~~--~~~~ll~~~~~~l~~~g~~~l~~~~r~ 186 (222)
.+.+|+|+++.++++.+ ....+++.+.+.|+|||.++++...+.
T Consensus 120 ----~~~~d~v~~~~~l~~~~~~~~~~~l~~i~~~LkpgG~l~i~d~~~~ 165 (239)
T TIGR00740 120 ----IKNASMVILNFTLQFLPPEDRIALLTKIYEGLNPNGVLVLSEKFRF 165 (239)
T ss_pred ----CCCCCEEeeecchhhCCHHHHHHHHHHHHHhcCCCeEEEEeecccC
Confidence 23589999988877643 356799999999999999999876543
No 77
>PRK13942 protein-L-isoaspartate O-methyltransferase; Provisional
Probab=99.43 E-value=3e-12 Score=102.21 Aligned_cols=113 Identities=15% Similarity=0.153 Sum_probs=81.9
Q ss_pred hHHHHHHHHhhhccCCCCCCCCCCCCeEEEeCCCccHHHHHHHHhC---CEEEEecc-hhhHHHHHHHHHHhhccccccC
Q 027530 41 ASVVFVKYLEKNCRKGRFCPSKLKGKRVIELGAGCGVAGFGMALLG---CNVITTDQ-IEVLPLLKRNVEWNTSRISQMN 116 (222)
Q Consensus 41 ~~~~la~~l~~~~~~~~~~~~~~~~~~vLelGcG~G~~~i~la~~g---~~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~ 116 (222)
++..+..++.+.. ...++.+|||+|||+|..+..+++.. .+|+++|. +++++.+++|++.++.
T Consensus 60 ~~p~~~~~~~~~l-------~~~~g~~VLdIG~GsG~~t~~la~~~~~~~~V~~vE~~~~~~~~a~~~l~~~g~------ 126 (212)
T PRK13942 60 SAIHMVAIMCELL-------DLKEGMKVLEIGTGSGYHAAVVAEIVGKSGKVVTIERIPELAEKAKKTLKKLGY------ 126 (212)
T ss_pred CcHHHHHHHHHHc-------CCCCcCEEEEECCcccHHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHHcCC------
Confidence 4556666555542 34577899999999999999888763 58999998 6799999999987763
Q ss_pred CCCCCCCCceEEEEeecCCCccccccCCCccEEEEeccccCccCHHHHHHHHHHhcCCCeEEEEEE
Q 027530 117 PGSGNLLGSIQAVELDWGNEDHIKAVAPPFDYIIGTDVVYAEHLLEPLLQTIFALSGPKTTILLGY 182 (222)
Q Consensus 117 ~~~~~~~~~v~~~~~d~~~~~~~~~~~~~fD~Ii~~d~~y~~~~~~~ll~~~~~~l~~~g~~~l~~ 182 (222)
.++++...|... ......+||+|++.... ..+...+.+.|+|||++++..
T Consensus 127 -------~~v~~~~gd~~~---~~~~~~~fD~I~~~~~~------~~~~~~l~~~LkpgG~lvi~~ 176 (212)
T PRK13942 127 -------DNVEVIVGDGTL---GYEENAPYDRIYVTAAG------PDIPKPLIEQLKDGGIMVIPV 176 (212)
T ss_pred -------CCeEEEECCccc---CCCcCCCcCEEEECCCc------ccchHHHHHhhCCCcEEEEEE
Confidence 367777755332 22235689999876543 233456777899999988754
No 78
>PRK04266 fibrillarin; Provisional
Probab=99.43 E-value=2.8e-11 Score=97.34 Aligned_cols=129 Identities=17% Similarity=0.128 Sum_probs=83.0
Q ss_pred CCCCCeEEEeCCCccHHHHHHHHhC--CEEEEecc-hhhHHHHHHHHHHhhccccccCCCCCCCCCceEEEEeecCCCcc
Q 027530 62 KLKGKRVIELGAGCGVAGFGMALLG--CNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSGNLLGSIQAVELDWGNEDH 138 (222)
Q Consensus 62 ~~~~~~vLelGcG~G~~~i~la~~g--~~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~ 138 (222)
..+|.+|||+|||+|..++.+++.. .+|+++|. ++|++.+.++++.. .++.+...|..+...
T Consensus 70 i~~g~~VlD~G~G~G~~~~~la~~v~~g~V~avD~~~~ml~~l~~~a~~~---------------~nv~~i~~D~~~~~~ 134 (226)
T PRK04266 70 IKKGSKVLYLGAASGTTVSHVSDIVEEGVVYAVEFAPRPMRELLEVAEER---------------KNIIPILADARKPER 134 (226)
T ss_pred CCCCCEEEEEccCCCHHHHHHHHhcCCCeEEEEECCHHHHHHHHHHhhhc---------------CCcEEEECCCCCcch
Confidence 4477899999999999999999873 47999998 66999887776532 255666655432211
Q ss_pred ccccCCCccEEEEeccccCccCHHHHHHHHHHhcCCCeEEEEEEEEcC-----h--hHHHHHHHHH-hcCCeEEEec
Q 027530 139 IKAVAPPFDYIIGTDVVYAEHLLEPLLQTIFALSGPKTTILLGYEIRS-----T--SVHEQMLQMW-KSNFNVKLVP 207 (222)
Q Consensus 139 ~~~~~~~fD~Ii~~d~~y~~~~~~~ll~~~~~~l~~~g~~~l~~~~r~-----~--~~~~~f~~~~-~~~~~v~~v~ 207 (222)
......+||+|++.-. .......+++.+.++|||||.++++.+.|. . ...+...+.+ +.+|++....
T Consensus 135 ~~~l~~~~D~i~~d~~--~p~~~~~~L~~~~r~LKpGG~lvI~v~~~~~d~~~~~~~~~~~~~~~l~~aGF~~i~~~ 209 (226)
T PRK04266 135 YAHVVEKVDVIYQDVA--QPNQAEIAIDNAEFFLKDGGYLLLAIKARSIDVTKDPKEIFKEEIRKLEEGGFEILEVV 209 (226)
T ss_pred hhhccccCCEEEECCC--ChhHHHHHHHHHHHhcCCCcEEEEEEecccccCcCCHHHHHHHHHHHHHHcCCeEEEEE
Confidence 1112356999995421 112224468999999999999999533322 1 1122233444 3588775443
No 79
>PRK08317 hypothetical protein; Provisional
Probab=99.43 E-value=5.1e-12 Score=101.86 Aligned_cols=105 Identities=19% Similarity=0.131 Sum_probs=83.0
Q ss_pred CCCCCCeEEEeCCCccHHHHHHHHhC---CEEEEecc-hhhHHHHHHHHHHhhccccccCCCCCCCCCceEEEEeecCCC
Q 027530 61 SKLKGKRVIELGAGCGVAGFGMALLG---CNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSGNLLGSIQAVELDWGNE 136 (222)
Q Consensus 61 ~~~~~~~vLelGcG~G~~~i~la~~g---~~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~v~~~~~d~~~~ 136 (222)
...++.+|||+|||+|..+..++... .+|+++|. +++++.++++.... ..++.+...|..+.
T Consensus 16 ~~~~~~~vLdiG~G~G~~~~~~a~~~~~~~~v~~~d~~~~~~~~a~~~~~~~--------------~~~~~~~~~d~~~~ 81 (241)
T PRK08317 16 AVQPGDRVLDVGCGPGNDARELARRVGPEGRVVGIDRSEAMLALAKERAAGL--------------GPNVEFVRGDADGL 81 (241)
T ss_pred CCCCCCEEEEeCCCCCHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHHhhCC--------------CCceEEEecccccC
Confidence 34567899999999999999888763 47999999 56889888873321 23667777555432
Q ss_pred ccccccCCCccEEEEeccccCccCHHHHHHHHHHhcCCCeEEEEEE
Q 027530 137 DHIKAVAPPFDYIIGTDVVYAEHLLEPLLQTIFALSGPKTTILLGY 182 (222)
Q Consensus 137 ~~~~~~~~~fD~Ii~~d~~y~~~~~~~ll~~~~~~l~~~g~~~l~~ 182 (222)
+...++||+|++..++.+......+++.+.++|+|||.+++..
T Consensus 82 ---~~~~~~~D~v~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~~~~ 124 (241)
T PRK08317 82 ---PFPDGSFDAVRSDRVLQHLEDPARALAEIARVLRPGGRVVVLD 124 (241)
T ss_pred ---CCCCCCceEEEEechhhccCCHHHHHHHHHHHhcCCcEEEEEe
Confidence 2335789999999999888889999999999999999998765
No 80
>TIGR02072 BioC biotin biosynthesis protein BioC. This enzyme, which is found in biotin biosynthetic gene clusters in proteobacteria, firmicutes, green-sulfur bacteria, fusobacterium and bacteroides, is believed to carry out an enzymatic step prior to the formation of pimeloyl-CoA (although attribution of this annotation is not traceable). The enzyme appears related to methyltransferases by homology.
Probab=99.42 E-value=2.5e-12 Score=103.78 Aligned_cols=101 Identities=16% Similarity=0.115 Sum_probs=80.3
Q ss_pred CCCCeEEEeCCCccHHHHHHHHhCC--EEEEecc-hhhHHHHHHHHHHhhccccccCCCCCCCCCceEEEEeecCCCccc
Q 027530 63 LKGKRVIELGAGCGVAGFGMALLGC--NVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSGNLLGSIQAVELDWGNEDHI 139 (222)
Q Consensus 63 ~~~~~vLelGcG~G~~~i~la~~g~--~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~ 139 (222)
..+++|||+|||+|..+..+++.+. +|+++|. +++++.++++.. .++.+...|..+.
T Consensus 33 ~~~~~vLDlG~G~G~~~~~l~~~~~~~~~~~~D~~~~~~~~~~~~~~-----------------~~~~~~~~d~~~~--- 92 (240)
T TIGR02072 33 FIPASVLDIGCGTGYLTRALLKRFPQAEFIALDISAGMLAQAKTKLS-----------------ENVQFICGDAEKL--- 92 (240)
T ss_pred CCCCeEEEECCCccHHHHHHHHhCCCCcEEEEeChHHHHHHHHHhcC-----------------CCCeEEecchhhC---
Confidence 3457899999999999999998865 5899999 558877776543 1456666555432
Q ss_pred cccCCCccEEEEeccccCccCHHHHHHHHHHhcCCCeEEEEEEE
Q 027530 140 KAVAPPFDYIIGTDVVYAEHLLEPLLQTIFALSGPKTTILLGYE 183 (222)
Q Consensus 140 ~~~~~~fD~Ii~~d~~y~~~~~~~ll~~~~~~l~~~g~~~l~~~ 183 (222)
+..+++||+|+++.++++..+...+++.+.++|+|||.+++...
T Consensus 93 ~~~~~~fD~vi~~~~l~~~~~~~~~l~~~~~~L~~~G~l~~~~~ 136 (240)
T TIGR02072 93 PLEDSSFDLIVSNLALQWCDDLSQALSELARVLKPGGLLAFSTF 136 (240)
T ss_pred CCCCCceeEEEEhhhhhhccCHHHHHHHHHHHcCCCcEEEEEeC
Confidence 23457899999999999988899999999999999999998764
No 81
>TIGR03840 TMPT_Se_Te thiopurine S-methyltransferase, Se/Te detoxification family. Members of this family are thiopurine S-methyltransferase from a branch in which at least some member proteins can perform selenium methylation as a means to detoxify selenium, or perform a related detoxification of tellurium. Note that the EC number definition does not specify a particular thiopurine, but rather represents a class of activity.
Probab=99.42 E-value=7.1e-12 Score=99.98 Aligned_cols=159 Identities=16% Similarity=0.095 Sum_probs=100.2
Q ss_pred hHHHHHHHHhhhccCCCCCCCCCCCCeEEEeCCCccHHHHHHHHhCCEEEEecc-hhhHHHHHHHHHHhhccccccCCC-
Q 027530 41 ASVVFVKYLEKNCRKGRFCPSKLKGKRVIELGAGCGVAGFGMALLGCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPG- 118 (222)
Q Consensus 41 ~~~~la~~l~~~~~~~~~~~~~~~~~~vLelGcG~G~~~i~la~~g~~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~- 118 (222)
....|.+++... ...++.+|||+|||.|..++.+|.+|.+|+++|+ +.+++.+.. .+++........
T Consensus 19 p~~~l~~~~~~l--------~~~~~~rvLd~GCG~G~da~~LA~~G~~V~gvD~S~~Ai~~~~~---~~~~~~~~~~~~~ 87 (213)
T TIGR03840 19 VNPLLVKHWPAL--------GLPAGARVFVPLCGKSLDLAWLAEQGHRVLGVELSEIAVEQFFA---ENGLTPTVTQQGE 87 (213)
T ss_pred CCHHHHHHHHhh--------CCCCCCeEEEeCCCchhHHHHHHhCCCeEEEEeCCHHHHHHHHH---HcCCCcceecccc
Confidence 456787877542 1125679999999999999999999999999999 558886532 222211000000
Q ss_pred -CCCCCCceEEEEeecCCCccccccCCCccEEEEeccccC--ccCHHHHHHHHHHhcCCCeEEEEEEEEcC------h--
Q 027530 119 -SGNLLGSIQAVELDWGNEDHIKAVAPPFDYIIGTDVVYA--EHLLEPLLQTIFALSGPKTTILLGYEIRS------T-- 187 (222)
Q Consensus 119 -~~~~~~~v~~~~~d~~~~~~~~~~~~~fD~Ii~~d~~y~--~~~~~~ll~~~~~~l~~~g~~~l~~~~r~------~-- 187 (222)
+.....++++...|..+... ...++||.|+-..++.+ .+....+++.+.++|+|||.+++...... +
T Consensus 88 ~~~~~~~~v~~~~~D~~~~~~--~~~~~fD~i~D~~~~~~l~~~~R~~~~~~l~~lLkpgG~~ll~~~~~~~~~~~gpp~ 165 (213)
T TIGR03840 88 FTRYRAGNIEIFCGDFFALTA--ADLGPVDAVYDRAALIALPEEMRQRYAAHLLALLPPGARQLLITLDYDQSEMAGPPF 165 (213)
T ss_pred ceeeecCceEEEEccCCCCCc--ccCCCcCEEEechhhccCCHHHHHHHHHHHHHHcCCCCeEEEEEEEcCCCCCCCcCC
Confidence 00013467777766654321 11357999998766644 34456689999999999997555433211 1
Q ss_pred -hHHHHHHHHHhcCCeEEEecCCCCC
Q 027530 188 -SVHEQMLQMWKSNFNVKLVPKAKES 212 (222)
Q Consensus 188 -~~~~~f~~~~~~~~~v~~v~~~~~~ 212 (222)
-...++.+.+...|.++.+......
T Consensus 166 ~~~~~eL~~~f~~~~~i~~~~~~~~~ 191 (213)
T TIGR03840 166 SVSPAEVEALYGGHYEIELLESRDVL 191 (213)
T ss_pred CCCHHHHHHHhcCCceEEEEeecccc
Confidence 1234455555557788777776655
No 82
>PF13649 Methyltransf_25: Methyltransferase domain; PDB: 3BXO_B 3GGD_A 3PX2_A 3PX3_A 3PFH_D 3PFG_A 1Y8C_A.
Probab=99.42 E-value=5.4e-13 Score=93.97 Aligned_cols=92 Identities=25% Similarity=0.317 Sum_probs=71.6
Q ss_pred EEEeCCCccHHHHHHHHhC-----CEEEEecc-hhhHHHHHHHHHHhhccccccCCCCCCCCCceEEEEeecCCCccccc
Q 027530 68 VIELGAGCGVAGFGMALLG-----CNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSGNLLGSIQAVELDWGNEDHIKA 141 (222)
Q Consensus 68 vLelGcG~G~~~i~la~~g-----~~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~ 141 (222)
|||||||+|.....+++.. .+++++|+ ++|++.++++....+ .++++.+.|+.+ .+.
T Consensus 1 ILDlgcG~G~~~~~l~~~~~~~~~~~~~gvD~s~~~l~~~~~~~~~~~--------------~~~~~~~~D~~~---l~~ 63 (101)
T PF13649_consen 1 ILDLGCGTGRVTRALARRFDAGPSSRVIGVDISPEMLELAKKRFSEDG--------------PKVRFVQADARD---LPF 63 (101)
T ss_dssp -EEET-TTSHHHHHHHHHS-----SEEEEEES-HHHHHHHHHHSHHTT--------------TTSEEEESCTTC---HHH
T ss_pred CEEeecCCcHHHHHHHHHhhhcccceEEEEECCHHHHHHHHHhchhcC--------------CceEEEECCHhH---Ccc
Confidence 7999999999999999874 68999999 669999999887643 267888877654 344
Q ss_pred cCCCccEEEEecc-ccC--ccCHHHHHHHHHHhcCCCe
Q 027530 142 VAPPFDYIIGTDV-VYA--EHLLEPLLQTIFALSGPKT 176 (222)
Q Consensus 142 ~~~~fD~Ii~~d~-~y~--~~~~~~ll~~~~~~l~~~g 176 (222)
..++||+|+++.. +.+ .+....+++.+.++++|||
T Consensus 64 ~~~~~D~v~~~~~~~~~~~~~~~~~ll~~~~~~l~pgG 101 (101)
T PF13649_consen 64 SDGKFDLVVCSGLSLHHLSPEELEALLRRIARLLRPGG 101 (101)
T ss_dssp HSSSEEEEEE-TTGGGGSSHHHHHHHHHHHHHTEEEEE
T ss_pred cCCCeeEEEEcCCccCCCCHHHHHHHHHHHHHHhCCCC
Confidence 5779999999644 443 3457889999999999987
No 83
>PF05401 NodS: Nodulation protein S (NodS); InterPro: IPR008715 This entry consists of nodulation S (NodS) proteins. The products of the rhizobial nodulation genes are involved in the biosynthesis of lipochitin oligosaccharides (LCOs), which are host-specific signal molecules required for nodule formation. NodS is an S-adenosyl-L-methionine (SAM)-dependent methyltransferase involved in N methylation of LCOs. NodS uses N-deacetylated chitooligosaccharides, the products of the NodBC proteins, as its methyl acceptors [].; GO: 0008757 S-adenosylmethionine-dependent methyltransferase activity, 0009312 oligosaccharide biosynthetic process, 0009877 nodulation; PDB: 3OFK_D 3OFJ_A.
Probab=99.42 E-value=8.3e-13 Score=102.19 Aligned_cols=99 Identities=20% Similarity=0.255 Sum_probs=76.8
Q ss_pred CeEEEeCCCccHHHHHHHHhCCEEEEecc-hhhHHHHHHHHHHhhccccccCCCCCCCCCceEEEEeecCCCccccccCC
Q 027530 66 KRVIELGAGCGVAGFGMALLGCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSGNLLGSIQAVELDWGNEDHIKAVAP 144 (222)
Q Consensus 66 ~~vLelGcG~G~~~i~la~~g~~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~ 144 (222)
.++||+|||.|.++..||..+.+++++|+ +.+++.+++.+.. ..+|++.+.+.-+. .+.+
T Consensus 45 ~~alEvGCs~G~lT~~LA~rCd~LlavDis~~Al~~Ar~Rl~~---------------~~~V~~~~~dvp~~----~P~~ 105 (201)
T PF05401_consen 45 RRALEVGCSIGVLTERLAPRCDRLLAVDISPRALARARERLAG---------------LPHVEWIQADVPEF----WPEG 105 (201)
T ss_dssp EEEEEE--TTSHHHHHHGGGEEEEEEEES-HHHHHHHHHHTTT----------------SSEEEEES-TTT-------SS
T ss_pred ceeEecCCCccHHHHHHHHhhCceEEEeCCHHHHHHHHHhcCC---------------CCCeEEEECcCCCC----CCCC
Confidence 57999999999999999999889999999 5699999987762 24788888776443 2468
Q ss_pred CccEEEEeccccCccC---HHHHHHHHHHhcCCCeEEEEEEE
Q 027530 145 PFDYIIGTDVVYAEHL---LEPLLQTIFALSGPKTTILLGYE 183 (222)
Q Consensus 145 ~fD~Ii~~d~~y~~~~---~~~ll~~~~~~l~~~g~~~l~~~ 183 (222)
+||+|+.+.++|+... +..+++.+...|+|||.+++++.
T Consensus 106 ~FDLIV~SEVlYYL~~~~~L~~~l~~l~~~L~pgG~LV~g~~ 147 (201)
T PF05401_consen 106 RFDLIVLSEVLYYLDDAEDLRAALDRLVAALAPGGHLVFGHA 147 (201)
T ss_dssp -EEEEEEES-GGGSSSHHHHHHHHHHHHHTEEEEEEEEEEEE
T ss_pred CeeEEEEehHhHcCCCHHHHHHHHHHHHHHhCCCCEEEEEEe
Confidence 9999999999999765 44577888888999999999875
No 84
>TIGR02085 meth_trns_rumB 23S rRNA (uracil-5-)-methyltransferase RumB. This family consists of RNA methyltransferases designated RumB, formerly YbjF. Members act on 23S rRNA U747 and the equivalent position in other proteobacterial species. This family is homologous to the other 23S rRNA methyltransferase RumA and to the tRNA methyltransferase TrmA.
Probab=99.41 E-value=9.4e-12 Score=107.41 Aligned_cols=127 Identities=11% Similarity=0.079 Sum_probs=93.2
Q ss_pred CCCeEEEeCCCccHHHHHHHHhCCEEEEecc-hhhHHHHHHHHHHhhccccccCCCCCCCCCceEEEEeecCCCcccccc
Q 027530 64 KGKRVIELGAGCGVAGFGMALLGCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSGNLLGSIQAVELDWGNEDHIKAV 142 (222)
Q Consensus 64 ~~~~vLelGcG~G~~~i~la~~g~~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~ 142 (222)
.+.+|||||||+|.+++.++..+.+|+++|. +++++.+++|++.|+. .++++...|..+... ..
T Consensus 233 ~~~~vLDL~cG~G~~~l~la~~~~~v~~vE~~~~av~~a~~N~~~~~~-------------~~~~~~~~d~~~~~~--~~ 297 (374)
T TIGR02085 233 PVTQMWDLFCGVGGFGLHCAGPDTQLTGIEIESEAIACAQQSAQMLGL-------------DNLSFAALDSAKFAT--AQ 297 (374)
T ss_pred CCCEEEEccCCccHHHHHHhhcCCeEEEEECCHHHHHHHHHHHHHcCC-------------CcEEEEECCHHHHHH--hc
Confidence 5679999999999999999998889999999 6799999999998874 368888866643221 11
Q ss_pred CCCccEEEEeccccCccCHHHHHHHHHHhcCCCeEEEEEEEEcChhHHHHHHHHHhcCCeEEEecCCCCC
Q 027530 143 APPFDYIIGTDVVYAEHLLEPLLQTIFALSGPKTTILLGYEIRSTSVHEQMLQMWKSNFNVKLVPKAKES 212 (222)
Q Consensus 143 ~~~fD~Ii~~d~~y~~~~~~~ll~~~~~~l~~~g~~~l~~~~r~~~~~~~f~~~~~~~~~v~~v~~~~~~ 212 (222)
..+||+|+.+++. ......+++.+.+ ++|++.+|+++.+.... +... .+ .+|+++.+.--++-
T Consensus 298 ~~~~D~vi~DPPr--~G~~~~~l~~l~~-~~p~~ivyvsc~p~Tla--RDl~-~L-~gy~l~~~~~~DmF 360 (374)
T TIGR02085 298 MSAPELVLVNPPR--RGIGKELCDYLSQ-MAPKFILYSSCNAQTMA--KDIA-EL-SGYQIERVQLFDMF 360 (374)
T ss_pred CCCCCEEEECCCC--CCCcHHHHHHHHh-cCCCeEEEEEeCHHHHH--HHHH-Hh-cCceEEEEEEeccC
Confidence 2469999998884 3556677777764 68999999998654332 2222 22 57888766544433
No 85
>TIGR00091 tRNA (guanine-N(7)-)-methyltransferase. In E. coli, this protein flanks the DNA repair protein MutY, also called micA.
Probab=99.41 E-value=2.9e-12 Score=100.89 Aligned_cols=121 Identities=12% Similarity=0.000 Sum_probs=86.2
Q ss_pred CCCeEEEeCCCccHHHHHHHHhC--CEEEEecc-hhhHHHHHHHHHHhhccccccCCCCCCCCCceEEEEeecCCCcccc
Q 027530 64 KGKRVIELGAGCGVAGFGMALLG--CNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSGNLLGSIQAVELDWGNEDHIK 140 (222)
Q Consensus 64 ~~~~vLelGcG~G~~~i~la~~g--~~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~ 140 (222)
.+.++||||||+|..++.+++.. .+|+++|. .++++.+++++..+++ .++++...|..+.....
T Consensus 16 ~~~~ilDiGcG~G~~~~~la~~~p~~~v~gvD~~~~~l~~a~~~~~~~~l-------------~ni~~i~~d~~~~~~~~ 82 (194)
T TIGR00091 16 KAPLHLEIGCGKGRFLIDMAKQNPDKNFLGIEIHTPIVLAANNKANKLGL-------------KNLHVLCGDANELLDKF 82 (194)
T ss_pred CCceEEEeCCCccHHHHHHHHhCCCCCEEEEEeeHHHHHHHHHHHHHhCC-------------CCEEEEccCHHHHHHhh
Confidence 44689999999999999999874 47999999 5699999999987763 37888886664322111
Q ss_pred ccCCCccEEEEeccccCcc--------CHHHHHHHHHHhcCCCeEEEEEEEEcChhHHHHHHHHHhc
Q 027530 141 AVAPPFDYIIGTDVVYAEH--------LLEPLLQTIFALSGPKTTILLGYEIRSTSVHEQMLQMWKS 199 (222)
Q Consensus 141 ~~~~~fD~Ii~~d~~y~~~--------~~~~ll~~~~~~l~~~g~~~l~~~~r~~~~~~~f~~~~~~ 199 (222)
..++.+|.|+.+-+.-+.. ....+++.+.++|+|||.+++...... ....+.+.+..
T Consensus 83 ~~~~~~d~v~~~~pdpw~k~~h~~~r~~~~~~l~~~~r~LkpgG~l~~~td~~~--~~~~~~~~~~~ 147 (194)
T TIGR00091 83 FPDGSLSKVFLNFPDPWPKKRHNKRRITQPHFLKEYANVLKKGGVIHFKTDNEP--LFEDMLKVLSE 147 (194)
T ss_pred CCCCceeEEEEECCCcCCCCCccccccCCHHHHHHHHHHhCCCCEEEEEeCCHH--HHHHHHHHHHh
Confidence 2345899998874332211 125799999999999999998775433 23444555543
No 86
>TIGR01983 UbiG ubiquinone biosynthesis O-methyltransferase. This model represents an O-methyltransferase believed to act at two points in the ubiquinone biosynthetic pathway in bacteria (UbiG) and fungi (COQ3). A separate methylase (MenG/UbiE) catalyzes the single C-methylation step. The most commonly used names for genes in this family do not indicate whether this gene is an O-methyl, or C-methyl transferase.
Probab=99.41 E-value=3.9e-12 Score=102.09 Aligned_cols=125 Identities=20% Similarity=0.226 Sum_probs=93.5
Q ss_pred hHHHHHHHHhhhccCCCCCCCCCCCCeEEEeCCCccHHHHHHHHhCCEEEEecc-hhhHHHHHHHHHHhhccccccCCCC
Q 027530 41 ASVVFVKYLEKNCRKGRFCPSKLKGKRVIELGAGCGVAGFGMALLGCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGS 119 (222)
Q Consensus 41 ~~~~la~~l~~~~~~~~~~~~~~~~~~vLelGcG~G~~~i~la~~g~~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~ 119 (222)
......+|+....... .....+.+|||+|||+|..+..+++.+++|+++|. +++++.+++++..++.
T Consensus 25 ~~~~~~~~i~~~~~~~---~~~~~~~~vLdlG~G~G~~~~~l~~~~~~v~~iD~s~~~~~~a~~~~~~~~~--------- 92 (224)
T TIGR01983 25 MNPLRLDYIRDTIRKN---KKPLFGLRVLDVGCGGGLLSEPLARLGANVTGIDASEENIEVAKLHAKKDPL--------- 92 (224)
T ss_pred hhHHHHHHHHHHHHhc---ccCCCCCeEEEECCCCCHHHHHHHhcCCeEEEEeCCHHHHHHHHHHHHHcCC---------
Confidence 3444556666553211 12345789999999999999999988889999999 5699999998886652
Q ss_pred CCCCCceEEEEeecCCCccccccCCCccEEEEeccccCccCHHHHHHHHHHhcCCCeEEEEEEE
Q 027530 120 GNLLGSIQAVELDWGNEDHIKAVAPPFDYIIGTDVVYAEHLLEPLLQTIFALSGPKTTILLGYE 183 (222)
Q Consensus 120 ~~~~~~v~~~~~d~~~~~~~~~~~~~fD~Ii~~d~~y~~~~~~~ll~~~~~~l~~~g~~~l~~~ 183 (222)
.++++...+..+... ...++||+|+++.++++......+++.+.+.|+|+|.++++..
T Consensus 93 ----~~~~~~~~d~~~~~~--~~~~~~D~i~~~~~l~~~~~~~~~l~~~~~~L~~gG~l~i~~~ 150 (224)
T TIGR01983 93 ----LKIEYRCTSVEDLAE--KGAKSFDVVTCMEVLEHVPDPQAFIRACAQLLKPGGILFFSTI 150 (224)
T ss_pred ----CceEEEeCCHHHhhc--CCCCCccEEEehhHHHhCCCHHHHHHHHHHhcCCCcEEEEEec
Confidence 145666544433211 1146899999999999988999999999999999999988764
No 87
>PRK05785 hypothetical protein; Provisional
Probab=99.41 E-value=2.1e-12 Score=104.02 Aligned_cols=87 Identities=16% Similarity=0.196 Sum_probs=70.7
Q ss_pred CCeEEEeCCCccHHHHHHHHh-CCEEEEecc-hhhHHHHHHHHHHhhccccccCCCCCCCCCceEEEEeecCCCcccccc
Q 027530 65 GKRVIELGAGCGVAGFGMALL-GCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSGNLLGSIQAVELDWGNEDHIKAV 142 (222)
Q Consensus 65 ~~~vLelGcG~G~~~i~la~~-g~~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~ 142 (222)
+.+|||||||||..+..+++. +.+|+++|. ++|++.++++. ...+.+ ...++..
T Consensus 52 ~~~VLDlGcGtG~~~~~l~~~~~~~v~gvD~S~~Ml~~a~~~~---------------------~~~~~d---~~~lp~~ 107 (226)
T PRK05785 52 PKKVLDVAAGKGELSYHFKKVFKYYVVALDYAENMLKMNLVAD---------------------DKVVGS---FEALPFR 107 (226)
T ss_pred CCeEEEEcCCCCHHHHHHHHhcCCEEEEECCCHHHHHHHHhcc---------------------ceEEec---hhhCCCC
Confidence 579999999999999999988 679999999 66999887531 112322 2334556
Q ss_pred CCCccEEEEeccccCccCHHHHHHHHHHhcCCC
Q 027530 143 APPFDYIIGTDVVYAEHLLEPLLQTIFALSGPK 175 (222)
Q Consensus 143 ~~~fD~Ii~~d~~y~~~~~~~ll~~~~~~l~~~ 175 (222)
+++||+|+++..+++..+.+.+++.+.++|+|.
T Consensus 108 d~sfD~v~~~~~l~~~~d~~~~l~e~~RvLkp~ 140 (226)
T PRK05785 108 DKSFDVVMSSFALHASDNIEKVIAEFTRVSRKQ 140 (226)
T ss_pred CCCEEEEEecChhhccCCHHHHHHHHHHHhcCc
Confidence 789999999999998899999999999999994
No 88
>PRK00216 ubiE ubiquinone/menaquinone biosynthesis methyltransferase; Reviewed
Probab=99.41 E-value=8.7e-12 Score=100.67 Aligned_cols=105 Identities=15% Similarity=0.134 Sum_probs=85.8
Q ss_pred CCCeEEEeCCCccHHHHHHHHhC---CEEEEecc-hhhHHHHHHHHHHhhccccccCCCCCCCCCceEEEEeecCCCccc
Q 027530 64 KGKRVIELGAGCGVAGFGMALLG---CNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSGNLLGSIQAVELDWGNEDHI 139 (222)
Q Consensus 64 ~~~~vLelGcG~G~~~i~la~~g---~~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~ 139 (222)
++.+|||+|||+|..+..++..+ .+|+++|. +++++.+++++..++. ..++.+...|+.+..
T Consensus 51 ~~~~vldiG~G~G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~------------~~~~~~~~~d~~~~~-- 116 (239)
T PRK00216 51 PGDKVLDLACGTGDLAIALAKAVGKTGEVVGLDFSEGMLAVGREKLRDLGL------------SGNVEFVQGDAEALP-- 116 (239)
T ss_pred CCCeEEEeCCCCCHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHHhhccccc------------ccCeEEEecccccCC--
Confidence 56899999999999999998876 67999999 5699999998875432 246777776665432
Q ss_pred cccCCCccEEEEeccccCccCHHHHHHHHHHhcCCCeEEEEEEE
Q 027530 140 KAVAPPFDYIIGTDVVYAEHLLEPLLQTIFALSGPKTTILLGYE 183 (222)
Q Consensus 140 ~~~~~~fD~Ii~~d~~y~~~~~~~ll~~~~~~l~~~g~~~l~~~ 183 (222)
...++||+|+++.++++......+++.+.++|+|||.+++...
T Consensus 117 -~~~~~~D~I~~~~~l~~~~~~~~~l~~~~~~L~~gG~li~~~~ 159 (239)
T PRK00216 117 -FPDNSFDAVTIAFGLRNVPDIDKALREMYRVLKPGGRLVILEF 159 (239)
T ss_pred -CCCCCccEEEEecccccCCCHHHHHHHHHHhccCCcEEEEEEe
Confidence 2356899999998888888899999999999999999988654
No 89
>PRK03522 rumB 23S rRNA methyluridine methyltransferase; Reviewed
Probab=99.40 E-value=1.1e-11 Score=104.63 Aligned_cols=126 Identities=13% Similarity=0.107 Sum_probs=91.6
Q ss_pred CCCeEEEeCCCccHHHHHHHHhCCEEEEecc-hhhHHHHHHHHHHhhccccccCCCCCCCCCceEEEEeecCCCcccccc
Q 027530 64 KGKRVIELGAGCGVAGFGMALLGCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSGNLLGSIQAVELDWGNEDHIKAV 142 (222)
Q Consensus 64 ~~~~vLelGcG~G~~~i~la~~g~~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~ 142 (222)
++.+|||+|||+|..++.+++.+.+|+++|. +++++.+++|++.|++ .++++...|..+.. ...
T Consensus 173 ~~~~VLDl~cG~G~~sl~la~~~~~V~gvD~s~~av~~A~~n~~~~~l-------------~~v~~~~~D~~~~~--~~~ 237 (315)
T PRK03522 173 PPRSMWDLFCGVGGFGLHCATPGMQLTGIEISAEAIACAKQSAAELGL-------------TNVQFQALDSTQFA--TAQ 237 (315)
T ss_pred CCCEEEEccCCCCHHHHHHHhcCCEEEEEeCCHHHHHHHHHHHHHcCC-------------CceEEEEcCHHHHH--Hhc
Confidence 5679999999999999999999999999999 6699999999998874 36888886664332 112
Q ss_pred CCCccEEEEeccccCccCHHHHHHHHHHhcCCCeEEEEEEEEcChhHHHHHHHHHhcCCeEEEecCCCC
Q 027530 143 APPFDYIIGTDVVYAEHLLEPLLQTIFALSGPKTTILLGYEIRSTSVHEQMLQMWKSNFNVKLVPKAKE 211 (222)
Q Consensus 143 ~~~fD~Ii~~d~~y~~~~~~~ll~~~~~~l~~~g~~~l~~~~r~~~~~~~f~~~~~~~~~v~~v~~~~~ 211 (222)
.++||+|+.+++- ......+++.+.+ ++|++.+|+++.+.... +.+ +.+ .+|+++.+.--++
T Consensus 238 ~~~~D~Vv~dPPr--~G~~~~~~~~l~~-~~~~~ivyvsc~p~t~~--rd~-~~l-~~y~~~~~~~~Dm 299 (315)
T PRK03522 238 GEVPDLVLVNPPR--RGIGKELCDYLSQ-MAPRFILYSSCNAQTMA--KDL-AHL-PGYRIERVQLFDM 299 (315)
T ss_pred CCCCeEEEECCCC--CCccHHHHHHHHH-cCCCeEEEEECCcccch--hHH-hhc-cCcEEEEEEEecc
Confidence 3579999998883 3444556666555 57889999988765442 222 222 5788766654333
No 90
>PRK11705 cyclopropane fatty acyl phospholipid synthase; Provisional
Probab=99.40 E-value=4.9e-12 Score=109.32 Aligned_cols=99 Identities=18% Similarity=0.191 Sum_probs=78.9
Q ss_pred CCCCCeEEEeCCCccHHHHHHHHh-CCEEEEecc-hhhHHHHHHHHHHhhccccccCCCCCCCCCceEEEEeecCCCccc
Q 027530 62 KLKGKRVIELGAGCGVAGFGMALL-GCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSGNLLGSIQAVELDWGNEDHI 139 (222)
Q Consensus 62 ~~~~~~vLelGcG~G~~~i~la~~-g~~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~ 139 (222)
..++.+|||||||+|..++.+++. |++|+++|+ +++++.+++++. + ..+++...|+.+.
T Consensus 165 l~~g~rVLDIGcG~G~~a~~la~~~g~~V~giDlS~~~l~~A~~~~~--~--------------l~v~~~~~D~~~l--- 225 (383)
T PRK11705 165 LKPGMRVLDIGCGWGGLARYAAEHYGVSVVGVTISAEQQKLAQERCA--G--------------LPVEIRLQDYRDL--- 225 (383)
T ss_pred CCCCCEEEEeCCCccHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHhc--c--------------CeEEEEECchhhc---
Confidence 346789999999999999988875 789999999 569999998874 2 1355666554322
Q ss_pred cccCCCccEEEEeccccCc--cCHHHHHHHHHHhcCCCeEEEEEE
Q 027530 140 KAVAPPFDYIIGTDVVYAE--HLLEPLLQTIFALSGPKTTILLGY 182 (222)
Q Consensus 140 ~~~~~~fD~Ii~~d~~y~~--~~~~~ll~~~~~~l~~~g~~~l~~ 182 (222)
+++||.|++..++++. .....+++.+.++|+|||.+++..
T Consensus 226 ---~~~fD~Ivs~~~~ehvg~~~~~~~l~~i~r~LkpGG~lvl~~ 267 (383)
T PRK11705 226 ---NGQFDRIVSVGMFEHVGPKNYRTYFEVVRRCLKPDGLFLLHT 267 (383)
T ss_pred ---CCCCCEEEEeCchhhCChHHHHHHHHHHHHHcCCCcEEEEEE
Confidence 4689999999988775 345789999999999999998865
No 91
>TIGR02716 C20_methyl_CrtF C-20 methyltransferase BchU. Members of this protein family are the S-adenosylmethionine-depenedent C-20 methyltransferase BchU, part of the pathway of bacteriochlorophyll c production in photosynthetic green sulfur bacteria. The position modified by this enzyme represents the difference between bacteriochlorophylls c and d; strains lacking this protein can only produced bacteriochlorophyll d.
Probab=99.40 E-value=9.5e-12 Score=104.68 Aligned_cols=104 Identities=14% Similarity=0.150 Sum_probs=83.9
Q ss_pred CCCCeEEEeCCCccHHHHHHHHhC--CEEEEecchhhHHHHHHHHHHhhccccccCCCCCCCCCceEEEEeecCCCcccc
Q 027530 63 LKGKRVIELGAGCGVAGFGMALLG--CNVITTDQIEVLPLLKRNVEWNTSRISQMNPGSGNLLGSIQAVELDWGNEDHIK 140 (222)
Q Consensus 63 ~~~~~vLelGcG~G~~~i~la~~g--~~v~~~D~~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~ 140 (222)
.++.+|||+|||+|..++.+++.. .+++++|.+++++.+++|+...++. +++++...|..+..
T Consensus 148 ~~~~~vlDiG~G~G~~~~~~~~~~p~~~~~~~D~~~~~~~a~~~~~~~gl~------------~rv~~~~~d~~~~~--- 212 (306)
T TIGR02716 148 DGVKKMIDVGGGIGDISAAMLKHFPELDSTILNLPGAIDLVNENAAEKGVA------------DRMRGIAVDIYKES--- 212 (306)
T ss_pred CCCCEEEEeCCchhHHHHHHHHHCCCCEEEEEecHHHHHHHHHHHHhCCcc------------ceEEEEecCccCCC---
Confidence 355799999999999999999885 4799999988999999999887643 57888886654321
Q ss_pred ccCCCccEEEEeccccCccC--HHHHHHHHHHhcCCCeEEEEEEE
Q 027530 141 AVAPPFDYIIGTDVVYAEHL--LEPLLQTIFALSGPKTTILLGYE 183 (222)
Q Consensus 141 ~~~~~fD~Ii~~d~~y~~~~--~~~ll~~~~~~l~~~g~~~l~~~ 183 (222)
.+.+|+|+.+.++|+... ...+++.+.+.|+|||++++...
T Consensus 213 --~~~~D~v~~~~~lh~~~~~~~~~il~~~~~~L~pgG~l~i~d~ 255 (306)
T TIGR02716 213 --YPEADAVLFCRILYSANEQLSTIMCKKAFDAMRSGGRLLILDM 255 (306)
T ss_pred --CCCCCEEEeEhhhhcCChHHHHHHHHHHHHhcCCCCEEEEEEe
Confidence 134799998888876543 45799999999999999999865
No 92
>TIGR00479 rumA 23S rRNA (uracil-5-)-methyltransferase RumA. This protein family was first proposed to be RNA methyltransferases by homology to the TrmA family. The member from E. coli has now been shown to act as the 23S RNA methyltransferase for the conserved U1939. The gene is now designated rumA and was previously designated ygcA.
Probab=99.39 E-value=1.4e-11 Score=108.37 Aligned_cols=129 Identities=13% Similarity=0.117 Sum_probs=92.7
Q ss_pred CCCeEEEeCCCccHHHHHHHHhCCEEEEecc-hhhHHHHHHHHHHhhccccccCCCCCCCCCceEEEEeecCCCcc-ccc
Q 027530 64 KGKRVIELGAGCGVAGFGMALLGCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSGNLLGSIQAVELDWGNEDH-IKA 141 (222)
Q Consensus 64 ~~~~vLelGcG~G~~~i~la~~g~~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~-~~~ 141 (222)
.+.+|||+|||+|..++.+++.+.+|+++|. +++++.+++|+..|++ .++++...|+.+... ...
T Consensus 292 ~~~~vLDl~cG~G~~sl~la~~~~~V~~vE~~~~av~~a~~n~~~~~~-------------~nv~~~~~d~~~~l~~~~~ 358 (431)
T TIGR00479 292 GEELVVDAYCGVGTFTLPLAKQAKSVVGIEVVPESVEKAQQNAELNGI-------------ANVEFLAGTLETVLPKQPW 358 (431)
T ss_pred CCCEEEEcCCCcCHHHHHHHHhCCEEEEEEcCHHHHHHHHHHHHHhCC-------------CceEEEeCCHHHHHHHHHh
Confidence 4579999999999999999998889999999 6699999999998874 378888877643211 111
Q ss_pred cCCCccEEEEeccccCccCHHHHHHHHHHhcCCCeEEEEEEEEcChhHHHHHHHHH-hcCCeEEEecCCCC
Q 027530 142 VAPPFDYIIGTDVVYAEHLLEPLLQTIFALSGPKTTILLGYEIRSTSVHEQMLQMW-KSNFNVKLVPKAKE 211 (222)
Q Consensus 142 ~~~~fD~Ii~~d~~y~~~~~~~ll~~~~~~l~~~g~~~l~~~~r~~~~~~~f~~~~-~~~~~v~~v~~~~~ 211 (222)
...+||+|+..++- ......+++.+.+ ++|++.+|+++.+.. +..=++.+ +.+|.++.+.--++
T Consensus 359 ~~~~~D~vi~dPPr--~G~~~~~l~~l~~-l~~~~ivyvsc~p~t---lard~~~l~~~gy~~~~~~~~Dm 423 (431)
T TIGR00479 359 AGQIPDVLLLDPPR--KGCAAEVLRTIIE-LKPERIVYVSCNPAT---LARDLEFLCKEGYGITWVQPVDM 423 (431)
T ss_pred cCCCCCEEEECcCC--CCCCHHHHHHHHh-cCCCEEEEEcCCHHH---HHHHHHHHHHCCeeEEEEEEecc
Confidence 24579999987774 3445677777665 789999999876432 22223333 55788766554433
No 93
>TIGR01177 conserved hypothetical protein TIGR01177. This family is found exclusively in the Archaea.
Probab=99.39 E-value=9e-12 Score=105.84 Aligned_cols=120 Identities=17% Similarity=0.128 Sum_probs=89.9
Q ss_pred HHHHHHHhhhccCCCCCCCCCCCCeEEEeCCCccHHHHHHHHhCCEEEEecc-hhhHHHHHHHHHHhhccccccCCCCCC
Q 027530 43 VVFVKYLEKNCRKGRFCPSKLKGKRVIELGAGCGVAGFGMALLGCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSGN 121 (222)
Q Consensus 43 ~~la~~l~~~~~~~~~~~~~~~~~~vLelGcG~G~~~i~la~~g~~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~ 121 (222)
..+|..+... ....+|.+|||+|||+|...+.++..+++|+++|+ ++|++.++.|++.++..
T Consensus 168 ~~la~~~~~l-------~~~~~g~~vLDp~cGtG~~lieaa~~~~~v~g~Di~~~~~~~a~~nl~~~g~~---------- 230 (329)
T TIGR01177 168 PKLARAMVNL-------ARVTEGDRVLDPFCGTGGFLIEAGLMGAKVIGCDIDWKMVAGARINLEHYGIE---------- 230 (329)
T ss_pred HHHHHHHHHH-------hCCCCcCEEEECCCCCCHHHHHHHHhCCeEEEEcCCHHHHHHHHHHHHHhCCC----------
Confidence 3556555443 23346789999999999999999989999999999 56999999999987743
Q ss_pred CCCceEEEEeecCCCccccccCCCccEEEEeccccCc---------cCHHHHHHHHHHhcCCCeEEEEEEEEc
Q 027530 122 LLGSIQAVELDWGNEDHIKAVAPPFDYIIGTDVVYAE---------HLLEPLLQTIFALSGPKTTILLGYEIR 185 (222)
Q Consensus 122 ~~~~v~~~~~d~~~~~~~~~~~~~fD~Ii~~d~~y~~---------~~~~~ll~~~~~~l~~~g~~~l~~~~r 185 (222)
++.+...|..+ .+...++||+|++++++-.. .....+++.+.++|+|||.+++..+.+
T Consensus 231 ---~i~~~~~D~~~---l~~~~~~~D~Iv~dPPyg~~~~~~~~~~~~l~~~~l~~~~r~Lk~gG~lv~~~~~~ 297 (329)
T TIGR01177 231 ---DFFVKRGDATK---LPLSSESVDAIATDPPYGRSTTAAGDGLESLYERSLEEFHEVLKSEGWIVYAVPTR 297 (329)
T ss_pred ---CCeEEecchhc---CCcccCCCCEEEECCCCcCcccccCCchHHHHHHHHHHHHHHccCCcEEEEEEcCC
Confidence 35666655443 33335789999998775321 225778999999999999998877654
No 94
>PRK00312 pcm protein-L-isoaspartate O-methyltransferase; Reviewed
Probab=99.39 E-value=1.4e-11 Score=98.23 Aligned_cols=114 Identities=17% Similarity=0.141 Sum_probs=83.0
Q ss_pred hHHHHHHHHhhhccCCCCCCCCCCCCeEEEeCCCccHHHHHHHHhCCEEEEecc-hhhHHHHHHHHHHhhccccccCCCC
Q 027530 41 ASVVFVKYLEKNCRKGRFCPSKLKGKRVIELGAGCGVAGFGMALLGCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGS 119 (222)
Q Consensus 41 ~~~~la~~l~~~~~~~~~~~~~~~~~~vLelGcG~G~~~i~la~~g~~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~ 119 (222)
++..+..++... ....++.+|||+|||+|..+..+++.+.+|+++|. +++++.+++|++.++.
T Consensus 62 ~~p~~~~~l~~~-------l~~~~~~~VLeiG~GsG~~t~~la~~~~~v~~vd~~~~~~~~a~~~~~~~~~--------- 125 (212)
T PRK00312 62 SQPYMVARMTEL-------LELKPGDRVLEIGTGSGYQAAVLAHLVRRVFSVERIKTLQWEAKRRLKQLGL--------- 125 (212)
T ss_pred CcHHHHHHHHHh-------cCCCCCCEEEEECCCccHHHHHHHHHhCEEEEEeCCHHHHHHHHHHHHHCCC---------
Confidence 344555555443 23446789999999999999988888779999998 6699999999987763
Q ss_pred CCCCCceEEEEeecCCCccccccCCCccEEEEeccccCccCHHHHHHHHHHhcCCCeEEEEEEE
Q 027530 120 GNLLGSIQAVELDWGNEDHIKAVAPPFDYIIGTDVVYAEHLLEPLLQTIFALSGPKTTILLGYE 183 (222)
Q Consensus 120 ~~~~~~v~~~~~d~~~~~~~~~~~~~fD~Ii~~d~~y~~~~~~~ll~~~~~~l~~~g~~~l~~~ 183 (222)
.++++...|..+. ....++||+|++.... ..+.+.+.+.|+|||.+++...
T Consensus 126 ----~~v~~~~~d~~~~---~~~~~~fD~I~~~~~~------~~~~~~l~~~L~~gG~lv~~~~ 176 (212)
T PRK00312 126 ----HNVSVRHGDGWKG---WPAYAPFDRILVTAAA------PEIPRALLEQLKEGGILVAPVG 176 (212)
T ss_pred ----CceEEEECCcccC---CCcCCCcCEEEEccCc------hhhhHHHHHhcCCCcEEEEEEc
Confidence 2577777554321 1124689999987543 2345667889999999888665
No 95
>TIGR02021 BchM-ChlM magnesium protoporphyrin O-methyltransferase. This model represents the S-adenosylmethionine-dependent O-methyltransferase responsible for methylation of magnesium protoporphyrin IX. This step is essentiasl for the biosynthesis of both chlorophyll and bacteriochlorophyll. This model encompasses two closely related clades, from cyanobacteria (and plants) where it is called ChlM and other photosynthetic bacteria where it is known as BchM.
Probab=99.38 E-value=4.6e-12 Score=101.56 Aligned_cols=101 Identities=21% Similarity=0.302 Sum_probs=78.2
Q ss_pred CCCCCeEEEeCCCccHHHHHHHHhCCEEEEecc-hhhHHHHHHHHHHhhccccccCCCCCCCCCceEEEEeecCCCcccc
Q 027530 62 KLKGKRVIELGAGCGVAGFGMALLGCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSGNLLGSIQAVELDWGNEDHIK 140 (222)
Q Consensus 62 ~~~~~~vLelGcG~G~~~i~la~~g~~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~ 140 (222)
..++++|||+|||+|..+..++..+.+|+++|. +++++.+++++..++. ..++.+...|+.+.
T Consensus 53 ~~~~~~vLDiGcG~G~~~~~la~~~~~v~gvD~s~~~i~~a~~~~~~~~~------------~~~i~~~~~d~~~~---- 116 (219)
T TIGR02021 53 PLKGKRVLDAGCGTGLLSIELAKRGAIVKAVDISEQMVQMARNRAQGRDV------------AGNVEFEVNDLLSL---- 116 (219)
T ss_pred CCCCCEEEEEeCCCCHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhcCC------------CCceEEEECChhhC----
Confidence 346789999999999999999998889999999 6699999999876642 13677777565432
Q ss_pred ccCCCccEEEEeccccCc--cCHHHHHHHHHHhcCCCeEEEE
Q 027530 141 AVAPPFDYIIGTDVVYAE--HLLEPLLQTIFALSGPKTTILL 180 (222)
Q Consensus 141 ~~~~~fD~Ii~~d~~y~~--~~~~~ll~~~~~~l~~~g~~~l 180 (222)
.++||+|++++++++. .....+++.+.+++++++.+.+
T Consensus 117 --~~~fD~ii~~~~l~~~~~~~~~~~l~~i~~~~~~~~~i~~ 156 (219)
T TIGR02021 117 --CGEFDIVVCMDVLIHYPASDMAKALGHLASLTKERVIFTF 156 (219)
T ss_pred --CCCcCEEEEhhHHHhCCHHHHHHHHHHHHHHhCCCEEEEE
Confidence 2689999999998664 3456678888888886655443
No 96
>PLN02672 methionine S-methyltransferase
Probab=99.38 E-value=1.4e-11 Score=116.97 Aligned_cols=160 Identities=18% Similarity=0.163 Sum_probs=104.3
Q ss_pred hHHHHHHHHhhhccCCCCCCCCCCCCeEEEeCCCccHHHHHHHHhC--CEEEEecc-hhhHHHHHHHHHHhhccccccCC
Q 027530 41 ASVVFVKYLEKNCRKGRFCPSKLKGKRVIELGAGCGVAGFGMALLG--CNVITTDQ-IEVLPLLKRNVEWNTSRISQMNP 117 (222)
Q Consensus 41 ~~~~la~~l~~~~~~~~~~~~~~~~~~vLelGcG~G~~~i~la~~g--~~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~ 117 (222)
-+..|++.+.... ...+++++|||||||+|.+++.+++.. ++|+++|+ +++++.+++|++.|++.-.....
T Consensus 101 eTE~lve~L~~~~------~~~~~~~~VLDlG~GSG~Iai~La~~~~~~~v~avDis~~Al~~A~~Na~~n~l~~~~~~~ 174 (1082)
T PLN02672 101 WSFTFYEGLNRHP------DSIFRDKTVAELGCGNGWISIAIAEKWLPSKVYGLDINPRAVKVAWINLYLNALDDDGLPV 174 (1082)
T ss_pred hHHHHHHHHHhcc------cccCCCCEEEEEecchHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHcCcccccccc
Confidence 4556777754321 123467899999999999999999874 47999999 66999999999998642000000
Q ss_pred ---CCCCCCCceEEEEeecCCCccccccCCCccEEEEeccccCcc-----------------------------------
Q 027530 118 ---GSGNLLGSIQAVELDWGNEDHIKAVAPPFDYIIGTDVVYAEH----------------------------------- 159 (222)
Q Consensus 118 ---~~~~~~~~v~~~~~d~~~~~~~~~~~~~fD~Ii~~d~~y~~~----------------------------------- 159 (222)
.......++++.+.||.+.. .....+||+||+|+++-...
T Consensus 175 ~~~~~~~l~~rV~f~~sDl~~~~--~~~~~~fDlIVSNPPYI~~~e~~~l~~eV~~~ep~~~~~~~~p~~AL~g~~~g~d 252 (1082)
T PLN02672 175 YDGEGKTLLDRVEFYESDLLGYC--RDNNIELDRIVGCIPQILNPNPEAMSKLVTENASEEFLYSLSNYCALQGFVEDQF 252 (1082)
T ss_pred cccccccccccEEEEECchhhhc--cccCCceEEEEECCCcCCCcchhhcChhhhhccccccccccCccccccCCCCCCc
Confidence 00011247899998886532 11123799999999863211
Q ss_pred ---CHHHHHHHHHHhcCCCeEEEEEEEEcChhHHH-HHHHHHhcCCeEEEecCCC
Q 027530 160 ---LLEPLLQTIFALSGPKTTILLGYEIRSTSVHE-QMLQMWKSNFNVKLVPKAK 210 (222)
Q Consensus 160 ---~~~~ll~~~~~~l~~~g~~~l~~~~r~~~~~~-~f~~~~~~~~~v~~v~~~~ 210 (222)
.+..++....++|+|||.+++-...+...... ++++ +.+|....+...+
T Consensus 253 GL~~yr~i~~~a~~~L~pgG~l~lEiG~~q~~~v~~~l~~--~~gf~~~~~~~~~ 305 (1082)
T PLN02672 253 GLGLIARAVEEGISVIKPMGIMIFNMGGRPGQAVCERLFE--RRGFRITKLWQTK 305 (1082)
T ss_pred HHHHHHHHHHHHHHhccCCCEEEEEECccHHHHHHHHHHH--HCCCCeeEEeeeh
Confidence 02456677778899999999887766654443 3443 3567665554443
No 97
>COG2242 CobL Precorrin-6B methylase 2 [Coenzyme metabolism]
Probab=99.35 E-value=8.8e-11 Score=90.23 Aligned_cols=124 Identities=22% Similarity=0.237 Sum_probs=89.9
Q ss_pred CCCCCCeEEEeCCCccHHHHHHHHhCC--EEEEecc-hhhHHHHHHHHHHhhccccccCCCCCCCCCceEEEEeecCCCc
Q 027530 61 SKLKGKRVIELGAGCGVAGFGMALLGC--NVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSGNLLGSIQAVELDWGNED 137 (222)
Q Consensus 61 ~~~~~~~vLelGcG~G~~~i~la~~g~--~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~v~~~~~d~~~~~ 137 (222)
...+|.+++|+|||||.+++.++..+. +|+++|. +++++..++|+++.+. +++.++..+.-+.
T Consensus 31 ~~~~g~~l~DIGaGtGsi~iE~a~~~p~~~v~AIe~~~~a~~~~~~N~~~fg~-------------~n~~vv~g~Ap~~- 96 (187)
T COG2242 31 RPRPGDRLWDIGAGTGSITIEWALAGPSGRVIAIERDEEALELIERNAARFGV-------------DNLEVVEGDAPEA- 96 (187)
T ss_pred CCCCCCEEEEeCCCccHHHHHHHHhCCCceEEEEecCHHHHHHHHHHHHHhCC-------------CcEEEEeccchHh-
Confidence 345788999999999999999996664 7999998 6799999999998874 5888888443221
Q ss_pred cccccCCCccEEEEeccccCccCHHHHHHHHHHhcCCCeEEEEEEEEcChhHHHHHHHHH-hcCC-eEEEe
Q 027530 138 HIKAVAPPFDYIIGTDVVYAEHLLEPLLQTIFALSGPKTTILLGYEIRSTSVHEQMLQMW-KSNF-NVKLV 206 (222)
Q Consensus 138 ~~~~~~~~fD~Ii~~d~~y~~~~~~~ll~~~~~~l~~~g~~~l~~~~r~~~~~~~f~~~~-~~~~-~v~~v 206 (222)
++ ...+||.|+...- ..++.+++++...|+|||++++-... -. .....++.+ +.++ ++.++
T Consensus 97 -L~-~~~~~daiFIGGg----~~i~~ile~~~~~l~~ggrlV~nait-lE-~~~~a~~~~~~~g~~ei~~v 159 (187)
T COG2242 97 -LP-DLPSPDAIFIGGG----GNIEEILEAAWERLKPGGRLVANAIT-LE-TLAKALEALEQLGGREIVQV 159 (187)
T ss_pred -hc-CCCCCCEEEECCC----CCHHHHHHHHHHHcCcCCeEEEEeec-HH-HHHHHHHHHHHcCCceEEEE
Confidence 22 2237999987755 46889999999999999998765432 22 223334444 3455 45443
No 98
>KOG1540 consensus Ubiquinone biosynthesis methyltransferase COQ5 [Coenzyme transport and metabolism]
Probab=99.34 E-value=3.9e-11 Score=95.82 Aligned_cols=121 Identities=14% Similarity=0.129 Sum_probs=92.6
Q ss_pred CCCCCeEEEeCCCccHHHHHHHHh--------CCEEEEecc-hhhHHHHHHHHHHhhccccccCCCCCCCCCceEEEEee
Q 027530 62 KLKGKRVIELGAGCGVAGFGMALL--------GCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSGNLLGSIQAVELD 132 (222)
Q Consensus 62 ~~~~~~vLelGcG~G~~~i~la~~--------g~~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~v~~~~~d 132 (222)
...+.+|||++||||-+++.+.+. +.+|+..|+ ++||..+++...+..+. ...++.++.
T Consensus 98 p~~~m~~lDvaGGTGDiaFril~~v~s~~~~~~~~V~v~Dinp~mL~vgkqRa~~~~l~----------~~~~~~w~~-- 165 (296)
T KOG1540|consen 98 PGKGMKVLDVAGGTGDIAFRILRHVKSQFGDRESKVTVLDINPHMLAVGKQRAKKRPLK----------ASSRVEWVE-- 165 (296)
T ss_pred CCCCCeEEEecCCcchhHHHHHHhhccccCCCCceEEEEeCCHHHHHHHHHHHhhcCCC----------cCCceEEEe--
Confidence 346689999999999999888764 246999999 78999998887664432 123467776
Q ss_pred cCCCccccccCCCccEEEEeccccCccCHHHHHHHHHHhcCCCeEEEEEEEEcCh-hHHHHHHH
Q 027530 133 WGNEDHIKAVAPPFDYIIGTDVVYAEHLLEPLLQTIFALSGPKTTILLGYEIRST-SVHEQMLQ 195 (222)
Q Consensus 133 ~~~~~~~~~~~~~fD~Ii~~d~~y~~~~~~~ll~~~~~~l~~~g~~~l~~~~r~~-~~~~~f~~ 195 (222)
++.+.+++++..||....+--+-+..++...++..+++|||||++++-.-.+.. ...+.|.+
T Consensus 166 -~dAE~LpFdd~s~D~yTiafGIRN~th~~k~l~EAYRVLKpGGrf~cLeFskv~~~~l~~fy~ 228 (296)
T KOG1540|consen 166 -GDAEDLPFDDDSFDAYTIAFGIRNVTHIQKALREAYRVLKPGGRFSCLEFSKVENEPLKWFYD 228 (296)
T ss_pred -CCcccCCCCCCcceeEEEecceecCCCHHHHHHHHHHhcCCCcEEEEEEccccccHHHHHHHH
Confidence 555677788999999988888888889999999999999999999765444333 34444443
No 99
>PF10672 Methyltrans_SAM: S-adenosylmethionine-dependent methyltransferase; InterPro: IPR019614 Members of this entry are S-adenosylmethionine-dependent methyltransferases from gamma-proteobacterial species. The diversity in the roles of methylation is matched by the almost bewildering number of methyltransferase enzymes that catalyse the methylation reaction. Although several classes of methyltransferase enzymes are known, the great majority of methylation reactions are catalysed by the S-adenosylmethionine-dependent methyltransferases. SAM (S-adenosylmethionine, also known as AdoMet) is well known as the methyl donor for the majority of methyltransferases that modify DNA, RNA, histones and other proteins, dictating replicational, transcriptional and translational fidelity, mismatch repair, chromatin modelling, epigenetic modifications and imprinting [].; GO: 0008168 methyltransferase activity; PDB: 2IGT_B 1WXX_A 1WXW_D 2CWW_B 2AS0_B 3V8V_B 3V97_A 3C0K_A 2B78_A 3LDF_A.
Probab=99.34 E-value=1.6e-11 Score=101.50 Aligned_cols=122 Identities=24% Similarity=0.180 Sum_probs=85.1
Q ss_pred CCCeEEEeCCCccHHHHHHHHhCC-EEEEecchh-hHHHHHHHHHHhhccccccCCCCCCCCCceEEEEeecCCCccccc
Q 027530 64 KGKRVIELGAGCGVAGFGMALLGC-NVITTDQIE-VLPLLKRNVEWNTSRISQMNPGSGNLLGSIQAVELDWGNEDHIKA 141 (222)
Q Consensus 64 ~~~~vLelGcG~G~~~i~la~~g~-~v~~~D~~~-~l~~~~~n~~~n~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~ 141 (222)
+|++|||+-|-||-.|+.++..|| +|+.+|.+. +++.+++|++.|++. ..++++...|+-+......
T Consensus 123 ~gkrvLnlFsYTGgfsv~Aa~gGA~~v~~VD~S~~al~~a~~N~~lNg~~-----------~~~~~~~~~Dvf~~l~~~~ 191 (286)
T PF10672_consen 123 KGKRVLNLFSYTGGFSVAAAAGGAKEVVSVDSSKRALEWAKENAALNGLD-----------LDRHRFIQGDVFKFLKRLK 191 (286)
T ss_dssp TTCEEEEET-TTTHHHHHHHHTTESEEEEEES-HHHHHHHHHHHHHTT-C-----------CTCEEEEES-HHHHHHHHH
T ss_pred CCCceEEecCCCCHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHcCCC-----------ccceEEEecCHHHHHHHHh
Confidence 679999999999999999999998 699999955 999999999999964 3577888765543211111
Q ss_pred cCCCccEEEEeccccCcc------CHHHHHHHHHHhcCCCeEEEEEEEEcChhHHHHHHHHH
Q 027530 142 VAPPFDYIIGTDVVYAEH------LLEPLLQTIFALSGPKTTILLGYEIRSTSVHEQMLQMW 197 (222)
Q Consensus 142 ~~~~fD~Ii~~d~~y~~~------~~~~ll~~~~~~l~~~g~~~l~~~~r~~~~~~~f~~~~ 197 (222)
...+||+||.-+|-|-.. .+..++..+.++++|||.++++.-...-. .+.|.+.+
T Consensus 192 ~~~~fD~IIlDPPsF~k~~~~~~~~y~~L~~~a~~ll~~gG~l~~~scs~~i~-~~~l~~~~ 252 (286)
T PF10672_consen 192 KGGRFDLIILDPPSFAKSKFDLERDYKKLLRRAMKLLKPGGLLLTCSCSHHIS-PDFLLEAV 252 (286)
T ss_dssp HTT-EEEEEE--SSEESSTCEHHHHHHHHHHHHHHTEEEEEEEEEEE--TTS--HHHHHHHH
T ss_pred cCCCCCEEEECCCCCCCCHHHHHHHHHHHHHHHHHhcCCCCEEEEEcCCcccC-HHHHHHHH
Confidence 256899999998887532 35668888889999999987766544332 34455544
No 100
>PRK07402 precorrin-6B methylase; Provisional
Probab=99.34 E-value=9.3e-11 Score=92.42 Aligned_cols=129 Identities=18% Similarity=0.222 Sum_probs=88.0
Q ss_pred CCCCeEEEeCCCccHHHHHHHHh--CCEEEEecc-hhhHHHHHHHHHHhhccccccCCCCCCCCCceEEEEeecCCCccc
Q 027530 63 LKGKRVIELGAGCGVAGFGMALL--GCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSGNLLGSIQAVELDWGNEDHI 139 (222)
Q Consensus 63 ~~~~~vLelGcG~G~~~i~la~~--g~~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~ 139 (222)
.++.+|||+|||+|..++.+++. +.+|+++|. +++++.+++|++.++. .++++...|..+. .
T Consensus 39 ~~~~~VLDiG~G~G~~~~~la~~~~~~~V~~vD~s~~~~~~a~~n~~~~~~-------------~~v~~~~~d~~~~--~ 103 (196)
T PRK07402 39 EPDSVLWDIGAGTGTIPVEAGLLCPKGRVIAIERDEEVVNLIRRNCDRFGV-------------KNVEVIEGSAPEC--L 103 (196)
T ss_pred CCCCEEEEeCCCCCHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHhCC-------------CCeEEEECchHHH--H
Confidence 36789999999999999998865 368999999 6799999999988763 3577776554321 1
Q ss_pred cccCCCccEEEEeccccCccCHHHHHHHHHHhcCCCeEEEEEEEEcChh-HHHHHHHHHh-cCCeEEEecCCC
Q 027530 140 KAVAPPFDYIIGTDVVYAEHLLEPLLQTIFALSGPKTTILLGYEIRSTS-VHEQMLQMWK-SNFNVKLVPKAK 210 (222)
Q Consensus 140 ~~~~~~fD~Ii~~d~~y~~~~~~~ll~~~~~~l~~~g~~~l~~~~r~~~-~~~~f~~~~~-~~~~v~~v~~~~ 210 (222)
......+|.++... ......+++.+.++|+|||.+++........ ...+.++..+ .++++.++....
T Consensus 104 ~~~~~~~d~v~~~~----~~~~~~~l~~~~~~LkpgG~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 172 (196)
T PRK07402 104 AQLAPAPDRVCIEG----GRPIKEILQAVWQYLKPGGRLVATASSLEGLYAISEGLAQLQARNIEVVQAAVNR 172 (196)
T ss_pred hhCCCCCCEEEEEC----CcCHHHHHHHHHHhcCCCeEEEEEeecHHHHHHHHHHHHhcCCCCceEEEEEhhh
Confidence 11223467665431 2356789999999999999998877643321 1223333332 367776665543
No 101
>COG2518 Pcm Protein-L-isoaspartate carboxylmethyltransferase [Posttranslational modification, protein turnover, chaperones]
Probab=99.34 E-value=1.6e-11 Score=96.16 Aligned_cols=101 Identities=21% Similarity=0.249 Sum_probs=78.5
Q ss_pred CCCCCCeEEEeCCCccHHHHHHHHhCCEEEEecc-hhhHHHHHHHHHHhhccccccCCCCCCCCCceEEEEeecCCCccc
Q 027530 61 SKLKGKRVIELGAGCGVAGFGMALLGCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSGNLLGSIQAVELDWGNEDHI 139 (222)
Q Consensus 61 ~~~~~~~vLelGcG~G~~~i~la~~g~~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~ 139 (222)
...++.+|||||||+|..+..+|++..+|+.+|. ++..+.|++|++..+. .+|.+.+.|= ..-
T Consensus 69 ~~~~g~~VLEIGtGsGY~aAvla~l~~~V~siEr~~~L~~~A~~~L~~lg~-------------~nV~v~~gDG---~~G 132 (209)
T COG2518 69 ELKPGDRVLEIGTGSGYQAAVLARLVGRVVSIERIEELAEQARRNLETLGY-------------ENVTVRHGDG---SKG 132 (209)
T ss_pred CCCCCCeEEEECCCchHHHHHHHHHhCeEEEEEEcHHHHHHHHHHHHHcCC-------------CceEEEECCc---ccC
Confidence 4567899999999999999999999999999997 7799999999998874 3688887443 322
Q ss_pred cccCCCccEEEEeccccCccCHHHHHHHHHHhcCCCeEEEEEEE
Q 027530 140 KAVAPPFDYIIGTDVVYAEHLLEPLLQTIFALSGPKTTILLGYE 183 (222)
Q Consensus 140 ~~~~~~fD~Ii~~d~~y~~~~~~~ll~~~~~~l~~~g~~~l~~~ 183 (222)
.....+||.|+..-.. +.+-+.+.+.|++||++++-..
T Consensus 133 ~~~~aPyD~I~Vtaaa------~~vP~~Ll~QL~~gGrlv~PvG 170 (209)
T COG2518 133 WPEEAPYDRIIVTAAA------PEVPEALLDQLKPGGRLVIPVG 170 (209)
T ss_pred CCCCCCcCEEEEeecc------CCCCHHHHHhcccCCEEEEEEc
Confidence 2345799999876443 3344556677899999877544
No 102
>PLN02585 magnesium protoporphyrin IX methyltransferase
Probab=99.33 E-value=2.2e-11 Score=102.43 Aligned_cols=104 Identities=17% Similarity=0.224 Sum_probs=73.4
Q ss_pred CCCCeEEEeCCCccHHHHHHHHhCCEEEEecc-hhhHHHHHHHHHHhhccccccCCCCCCCCCceEEEEeecCCCccccc
Q 027530 63 LKGKRVIELGAGCGVAGFGMALLGCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSGNLLGSIQAVELDWGNEDHIKA 141 (222)
Q Consensus 63 ~~~~~vLelGcG~G~~~i~la~~g~~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~ 141 (222)
.++.+|||+|||+|.+++.+++.|.+|+++|+ ++|++.+++|+....... ....++++...|+.+
T Consensus 143 ~~~~~VLDlGcGtG~~a~~la~~g~~V~gvD~S~~ml~~A~~~~~~~~~~~--------~~~~~~~f~~~Dl~~------ 208 (315)
T PLN02585 143 LAGVTVCDAGCGTGSLAIPLALEGAIVSASDISAAMVAEAERRAKEALAAL--------PPEVLPKFEANDLES------ 208 (315)
T ss_pred CCCCEEEEecCCCCHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhccccc--------ccccceEEEEcchhh------
Confidence 46789999999999999999999999999999 569999999987542110 011356666655432
Q ss_pred cCCCccEEEEeccccCccC--HHHHHHHHHHhcCCCeEEEEEE
Q 027530 142 VAPPFDYIIGTDVVYAEHL--LEPLLQTIFALSGPKTTILLGY 182 (222)
Q Consensus 142 ~~~~fD~Ii~~d~~y~~~~--~~~ll~~~~~~l~~~g~~~l~~ 182 (222)
.+++||+|++.++++|... ...+++.+.++ .+++. +++.
T Consensus 209 l~~~fD~Vv~~~vL~H~p~~~~~~ll~~l~~l-~~g~l-iIs~ 249 (315)
T PLN02585 209 LSGKYDTVTCLDVLIHYPQDKADGMIAHLASL-AEKRL-IISF 249 (315)
T ss_pred cCCCcCEEEEcCEEEecCHHHHHHHHHHHHhh-cCCEE-EEEe
Confidence 2468999999999876433 33456666643 45444 5554
No 103
>PRK06922 hypothetical protein; Provisional
Probab=99.31 E-value=1.5e-11 Score=110.66 Aligned_cols=106 Identities=19% Similarity=0.207 Sum_probs=79.3
Q ss_pred CCCCeEEEeCCCccHHHHHHHHh--CCEEEEecc-hhhHHHHHHHHHHhhccccccCCCCCCCCCceEEEEeecCCCccc
Q 027530 63 LKGKRVIELGAGCGVAGFGMALL--GCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSGNLLGSIQAVELDWGNEDHI 139 (222)
Q Consensus 63 ~~~~~vLelGcG~G~~~i~la~~--g~~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~ 139 (222)
.++.+|||+|||+|..+..+++. +.+|+++|+ +.|++.++++...++ .++.+...|..+...
T Consensus 417 ~~g~rVLDIGCGTG~ls~~LA~~~P~~kVtGIDIS~~MLe~Ararl~~~g--------------~~ie~I~gDa~dLp~- 481 (677)
T PRK06922 417 IKGDTIVDVGAGGGVMLDMIEEETEDKRIYGIDISENVIDTLKKKKQNEG--------------RSWNVIKGDAINLSS- 481 (677)
T ss_pred cCCCEEEEeCCCCCHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHhhhcC--------------CCeEEEEcchHhCcc-
Confidence 46789999999999998888865 458999999 559999998876443 245666655433211
Q ss_pred cccCCCccEEEEeccccCc-------------cCHHHHHHHHHHhcCCCeEEEEEEE
Q 027530 140 KAVAPPFDYIIGTDVVYAE-------------HLLEPLLQTIFALSGPKTTILLGYE 183 (222)
Q Consensus 140 ~~~~~~fD~Ii~~d~~y~~-------------~~~~~ll~~~~~~l~~~g~~~l~~~ 183 (222)
...+++||+|+++.++++. .....+++.+.++|+|||.+++...
T Consensus 482 ~fedeSFDvVVsn~vLH~L~syIp~~g~~f~~edl~kiLreI~RVLKPGGrLII~D~ 538 (677)
T PRK06922 482 SFEKESVDTIVYSSILHELFSYIEYEGKKFNHEVIKKGLQSAYEVLKPGGRIIIRDG 538 (677)
T ss_pred ccCCCCEEEEEEchHHHhhhhhcccccccccHHHHHHHHHHHHHHcCCCcEEEEEeC
Confidence 1345789999998877532 3457789999999999999999864
No 104
>PRK13255 thiopurine S-methyltransferase; Reviewed
Probab=99.31 E-value=8.7e-11 Score=94.07 Aligned_cols=159 Identities=17% Similarity=0.103 Sum_probs=98.4
Q ss_pred hHHHHHHHHhhhccCCCCCCCCCCCCeEEEeCCCccHHHHHHHHhCCEEEEecc-hhhHHHHHHHHHHhhccccccCCC-
Q 027530 41 ASVVFVKYLEKNCRKGRFCPSKLKGKRVIELGAGCGVAGFGMALLGCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPG- 118 (222)
Q Consensus 41 ~~~~la~~l~~~~~~~~~~~~~~~~~~vLelGcG~G~~~i~la~~g~~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~- 118 (222)
....|.+|+... ...++.+|||+|||.|..++.+|.+|.+|+++|+ +.+++.+.. .+++........
T Consensus 22 p~~~L~~~~~~~--------~~~~~~rvL~~gCG~G~da~~LA~~G~~V~avD~s~~Ai~~~~~---~~~l~~~~~~~~~ 90 (218)
T PRK13255 22 VNPLLQKYWPAL--------ALPAGSRVLVPLCGKSLDMLWLAEQGHEVLGVELSELAVEQFFA---ENGLTPQTRQSGE 90 (218)
T ss_pred CCHHHHHHHHhh--------CCCCCCeEEEeCCCChHhHHHHHhCCCeEEEEccCHHHHHHHHH---HcCCCcccccccc
Confidence 356777777532 1225679999999999999999999999999999 558887632 333221100000
Q ss_pred -CCCCCCceEEEEeecCCCccccccCCCccEEEEeccccC--ccCHHHHHHHHHHhcCCCeEEEEEEEEcCh--------
Q 027530 119 -SGNLLGSIQAVELDWGNEDHIKAVAPPFDYIIGTDVVYA--EHLLEPLLQTIFALSGPKTTILLGYEIRST-------- 187 (222)
Q Consensus 119 -~~~~~~~v~~~~~d~~~~~~~~~~~~~fD~Ii~~d~~y~--~~~~~~ll~~~~~~l~~~g~~~l~~~~r~~-------- 187 (222)
......+|++.+.|..+... .....||.|+-..++.+ .+....+++.+.++|+|||++++......+
T Consensus 91 ~~~~~~~~v~~~~~D~~~l~~--~~~~~fd~v~D~~~~~~l~~~~R~~~~~~l~~lL~pgG~~~l~~~~~~~~~~~gPp~ 168 (218)
T PRK13255 91 FEHYQAGEITIYCGDFFALTA--ADLADVDAVYDRAALIALPEEMRERYVQQLAALLPAGCRGLLVTLDYPQEELAGPPF 168 (218)
T ss_pred ccccccCceEEEECcccCCCc--ccCCCeeEEEehHhHhhCCHHHHHHHHHHHHHHcCCCCeEEEEEEEeCCccCCCCCC
Confidence 00123467777755543321 12357999997776544 345677999999999999975543321111
Q ss_pred -hHHHHHHHHHhcCCeEEEecCCCCC
Q 027530 188 -SVHEQMLQMWKSNFNVKLVPKAKES 212 (222)
Q Consensus 188 -~~~~~f~~~~~~~~~v~~v~~~~~~ 212 (222)
-...++.+.+...|.++.+......
T Consensus 169 ~~~~~el~~~~~~~~~i~~~~~~~~~ 194 (218)
T PRK13255 169 SVSDEEVEALYAGCFEIELLERQDVL 194 (218)
T ss_pred CCCHHHHHHHhcCCceEEEeeecccc
Confidence 1234555555555777766665443
No 105
>PRK05031 tRNA (uracil-5-)-methyltransferase; Validated
Probab=99.30 E-value=1.3e-10 Score=99.99 Aligned_cols=143 Identities=12% Similarity=0.081 Sum_probs=97.6
Q ss_pred hHHHHHHHHhhhccCCCCCCCCCCCCeEEEeCCCccHHHHHHHHhCCEEEEecc-hhhHHHHHHHHHHhhccccccCCCC
Q 027530 41 ASVVFVKYLEKNCRKGRFCPSKLKGKRVIELGAGCGVAGFGMALLGCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGS 119 (222)
Q Consensus 41 ~~~~la~~l~~~~~~~~~~~~~~~~~~vLelGcG~G~~~i~la~~g~~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~ 119 (222)
.+..|.+++.+.. . ..+.+||||+||+|.+|+.+++...+|+++|. +++++.+++|+..|++
T Consensus 191 ~~e~l~~~v~~~~-------~-~~~~~vLDl~~G~G~~sl~la~~~~~v~~vE~~~~ai~~a~~N~~~~~~--------- 253 (362)
T PRK05031 191 VNEKMLEWALDAT-------K-GSKGDLLELYCGNGNFTLALARNFRRVLATEISKPSVAAAQYNIAANGI--------- 253 (362)
T ss_pred HHHHHHHHHHHHh-------h-cCCCeEEEEeccccHHHHHHHhhCCEEEEEECCHHHHHHHHHHHHHhCC---------
Confidence 3556666665542 1 12357999999999999999988778999999 6699999999999974
Q ss_pred CCCCCceEEEEeecCCCcc-ccc------------cCCCccEEEEeccccCccCHHHHHHHHHHhcCCCeEEEEEEEEcC
Q 027530 120 GNLLGSIQAVELDWGNEDH-IKA------------VAPPFDYIIGTDVVYAEHLLEPLLQTIFALSGPKTTILLGYEIRS 186 (222)
Q Consensus 120 ~~~~~~v~~~~~d~~~~~~-~~~------------~~~~fD~Ii~~d~~y~~~~~~~ll~~~~~~l~~~g~~~l~~~~r~ 186 (222)
.++++...|..+... ... ...+||+|+..++ + ....+.+++.+.+ |++.+|+++.+..
T Consensus 254 ----~~v~~~~~d~~~~l~~~~~~~~~~~~~~~~~~~~~~D~v~lDPP-R-~G~~~~~l~~l~~---~~~ivyvSC~p~t 324 (362)
T PRK05031 254 ----DNVQIIRMSAEEFTQAMNGVREFNRLKGIDLKSYNFSTIFVDPP-R-AGLDDETLKLVQA---YERILYISCNPET 324 (362)
T ss_pred ----CcEEEEECCHHHHHHHHhhcccccccccccccCCCCCEEEECCC-C-CCCcHHHHHHHHc---cCCEEEEEeCHHH
Confidence 368888877644311 000 0225999999877 4 4566677777755 7899999987633
Q ss_pred hhHHHHHHHHHhcCCeEEEecCCCCC
Q 027530 187 TSVHEQMLQMWKSNFNVKLVPKAKES 212 (222)
Q Consensus 187 ~~~~~~f~~~~~~~~~v~~v~~~~~~ 212 (222)
. ...+.. +..+|+++.+.--++-
T Consensus 325 l--arDl~~-L~~gY~l~~v~~~DmF 347 (362)
T PRK05031 325 L--CENLET-LSQTHKVERFALFDQF 347 (362)
T ss_pred H--HHHHHH-HcCCcEEEEEEEcccC
Confidence 2 222322 3248888766554443
No 106
>TIGR01934 MenG_MenH_UbiE ubiquinone/menaquinone biosynthesis methyltransferases. Note that a number of non-orthologous genes which are members of pfam03737 have been erroneously annotated as MenG methyltransferases.
Probab=99.30 E-value=6.9e-11 Score=94.41 Aligned_cols=103 Identities=17% Similarity=0.175 Sum_probs=82.5
Q ss_pred CCCeEEEeCCCccHHHHHHHHhCC---EEEEecc-hhhHHHHHHHHHHhhccccccCCCCCCCCCceEEEEeecCCCccc
Q 027530 64 KGKRVIELGAGCGVAGFGMALLGC---NVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSGNLLGSIQAVELDWGNEDHI 139 (222)
Q Consensus 64 ~~~~vLelGcG~G~~~i~la~~g~---~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~ 139 (222)
++.+|||+|||+|..+..+++.+. +++++|. +.+++.++++.. . ..++.+...+..+.
T Consensus 39 ~~~~vldiG~G~G~~~~~~~~~~~~~~~~~~iD~~~~~~~~~~~~~~--~-------------~~~i~~~~~d~~~~--- 100 (223)
T TIGR01934 39 KGQKVLDVACGTGDLAIELAKSAPDRGKVTGVDFSSEMLEVAKKKSE--L-------------PLNIEFIQADAEAL--- 100 (223)
T ss_pred CCCeEEEeCCCCChhHHHHHHhcCCCceEEEEECCHHHHHHHHHHhc--c-------------CCCceEEecchhcC---
Confidence 678999999999999998887754 7999999 568888888765 1 13567776555432
Q ss_pred cccCCCccEEEEeccccCccCHHHHHHHHHHhcCCCeEEEEEEEE
Q 027530 140 KAVAPPFDYIIGTDVVYAEHLLEPLLQTIFALSGPKTTILLGYEI 184 (222)
Q Consensus 140 ~~~~~~fD~Ii~~d~~y~~~~~~~ll~~~~~~l~~~g~~~l~~~~ 184 (222)
+...++||+|+++..+.+......+++.+.++|+|||.+++....
T Consensus 101 ~~~~~~~D~i~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~~~~~~ 145 (223)
T TIGR01934 101 PFEDNSFDAVTIAFGLRNVTDIQKALREMYRVLKPGGRLVILEFS 145 (223)
T ss_pred CCCCCcEEEEEEeeeeCCcccHHHHHHHHHHHcCCCcEEEEEEec
Confidence 223568999999988888888899999999999999999887653
No 107
>TIGR02143 trmA_only tRNA (uracil-5-)-methyltransferase. This family consists exclusively of proteins believed to act as tRNA (uracil-5-)-methyltransferase. All members of far are proteobacterial. The seed alignment was taken directly from pfam05958 in Pfam 12.0, but higher cutoffs are used to select only functionally equivalent proteins. Homologous proteins excluded by the higher cutoff scores of this model include other uracil methyltransferases, such as RumA, active on rRNA.
Probab=99.30 E-value=1e-10 Score=100.25 Aligned_cols=161 Identities=12% Similarity=0.063 Sum_probs=103.7
Q ss_pred CeEEEEeeCCCCccccccccchHHHHHHHHhhhccCCCCCCCCCCCCeEEEeCCCccHHHHHHHHhCCEEEEecc-hhhH
Q 027530 20 GHQLQFSQDPNSKHLGTTVWDASVVFVKYLEKNCRKGRFCPSKLKGKRVIELGAGCGVAGFGMALLGCNVITTDQ-IEVL 98 (222)
Q Consensus 20 ~~~~~i~q~~~~~~~g~~~W~~~~~la~~l~~~~~~~~~~~~~~~~~~vLelGcG~G~~~i~la~~g~~v~~~D~-~~~l 98 (222)
|..+.+.+.++++.-.. -.....|.+++.+.. ...+.+|||||||+|.+++.+++...+|+++|. ++++
T Consensus 163 ~~~~~~~~~~~~F~Q~N--~~~~~~l~~~v~~~~--------~~~~~~vlDl~~G~G~~sl~la~~~~~v~~vE~~~~av 232 (353)
T TIGR02143 163 GREFIYRQVENSFTQPN--AAVNIKMLEWACEVT--------QGSKGDLLELYCGNGNFSLALAQNFRRVLATEIAKPSV 232 (353)
T ss_pred CeEEEEEECCCCcccCC--HHHHHHHHHHHHHHh--------hcCCCcEEEEeccccHHHHHHHHhCCEEEEEECCHHHH
Confidence 33356666665433111 122345555555431 112346999999999999999988778999998 6799
Q ss_pred HHHHHHHHHhhccccccCCCCCCCCCceEEEEeecCCCcccc-----c---c-----CCCccEEEEeccccCccCHHHHH
Q 027530 99 PLLKRNVEWNTSRISQMNPGSGNLLGSIQAVELDWGNEDHIK-----A---V-----APPFDYIIGTDVVYAEHLLEPLL 165 (222)
Q Consensus 99 ~~~~~n~~~n~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~-----~---~-----~~~fD~Ii~~d~~y~~~~~~~ll 165 (222)
+.+++|++.|++ .++++...|..+..... . . ...||+|+..++ .......++
T Consensus 233 ~~a~~n~~~~~~-------------~~v~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~d~v~lDPP--R~G~~~~~l 297 (353)
T TIGR02143 233 NAAQYNIAANNI-------------DNVQIIRMSAEEFTQAMNGVREFRRLKGIDLKSYNCSTIFVDPP--RAGLDPDTC 297 (353)
T ss_pred HHHHHHHHHcCC-------------CcEEEEEcCHHHHHHHHhhccccccccccccccCCCCEEEECCC--CCCCcHHHH
Confidence 999999999974 36788876665422100 0 0 124899999877 356666777
Q ss_pred HHHHHhcCCCeEEEEEEEEcChhHHHHHHHHHhcCCeEEEecCCCC
Q 027530 166 QTIFALSGPKTTILLGYEIRSTSVHEQMLQMWKSNFNVKLVPKAKE 211 (222)
Q Consensus 166 ~~~~~~l~~~g~~~l~~~~r~~~~~~~f~~~~~~~~~v~~v~~~~~ 211 (222)
+.+.+ |++.+|+++.+.... ..... +..+|+++.+.--++
T Consensus 298 ~~l~~---~~~ivYvsC~p~tla--RDl~~-L~~~Y~l~~v~~~Dm 337 (353)
T TIGR02143 298 KLVQA---YERILYISCNPETLK--ANLEQ-LSETHRVERFALFDQ 337 (353)
T ss_pred HHHHc---CCcEEEEEcCHHHHH--HHHHH-HhcCcEEEEEEEccc
Confidence 77755 789999998765432 22222 223487766654333
No 108
>TIGR03587 Pse_Me-ase pseudaminic acid biosynthesis-associated methylase. Members of this small clade are methyltransferases of the pfam08241 family and are observed within operons for the biosynthesis of pseudaminic acid, a component of exopolysaccharide and flagellin glycosyl modifications. Notable among these genomes is Pseudomonas fluorescens PfO-1. Possibly one of the two hydroxyl groups of pseudaminic acid, at positions 4 and 8 is converted to a methoxy group by this enzyme
Probab=99.30 E-value=3.3e-11 Score=95.61 Aligned_cols=95 Identities=17% Similarity=0.154 Sum_probs=68.7
Q ss_pred CCCeEEEeCCCccHHHHHHHHh--CCEEEEecc-hhhHHHHHHHHHHhhccccccCCCCCCCCCceEEEEeecCCCcccc
Q 027530 64 KGKRVIELGAGCGVAGFGMALL--GCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSGNLLGSIQAVELDWGNEDHIK 140 (222)
Q Consensus 64 ~~~~vLelGcG~G~~~i~la~~--g~~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~ 140 (222)
++.+|||+|||+|..+..+++. +.+++++|+ ++|++.++++.. ++.+...+..+ +
T Consensus 43 ~~~~VLDiGCG~G~~~~~L~~~~~~~~v~giDiS~~~l~~A~~~~~------------------~~~~~~~d~~~----~ 100 (204)
T TIGR03587 43 KIASILELGANIGMNLAALKRLLPFKHIYGVEINEYAVEKAKAYLP------------------NINIIQGSLFD----P 100 (204)
T ss_pred CCCcEEEEecCCCHHHHHHHHhCCCCeEEEEECCHHHHHHHHhhCC------------------CCcEEEeeccC----C
Confidence 5678999999999999999876 568999999 569999987642 23445544433 2
Q ss_pred ccCCCccEEEEeccccCcc--CHHHHHHHHHHhcCCCeEEEEEE
Q 027530 141 AVAPPFDYIIGTDVVYAEH--LLEPLLQTIFALSGPKTTILLGY 182 (222)
Q Consensus 141 ~~~~~fD~Ii~~d~~y~~~--~~~~ll~~~~~~l~~~g~~~l~~ 182 (222)
..+++||+|+++.++++.. ....+++.+.++++ +.++++.
T Consensus 101 ~~~~sfD~V~~~~vL~hl~p~~~~~~l~el~r~~~--~~v~i~e 142 (204)
T TIGR03587 101 FKDNFFDLVLTKGVLIHINPDNLPTAYRELYRCSN--RYILIAE 142 (204)
T ss_pred CCCCCEEEEEECChhhhCCHHHHHHHHHHHHhhcC--cEEEEEE
Confidence 3467899999999998753 34556666666653 4555543
No 109
>PLN02336 phosphoethanolamine N-methyltransferase
Probab=99.30 E-value=2.7e-11 Score=107.78 Aligned_cols=104 Identities=21% Similarity=0.175 Sum_probs=80.1
Q ss_pred CCCCeEEEeCCCccHHHHHHHHhCCEEEEecc-hhhHHHHHHHHHHhhccccccCCCCCCCCCceEEEEeecCCCccccc
Q 027530 63 LKGKRVIELGAGCGVAGFGMALLGCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSGNLLGSIQAVELDWGNEDHIKA 141 (222)
Q Consensus 63 ~~~~~vLelGcG~G~~~i~la~~g~~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~ 141 (222)
.++++|||||||+|..+..+++.+.+|+++|. +++++.+++ .++. ..++.+...|..+.. .+.
T Consensus 36 ~~~~~vLDlGcG~G~~~~~la~~~~~v~giD~s~~~l~~a~~---~~~~------------~~~i~~~~~d~~~~~-~~~ 99 (475)
T PLN02336 36 YEGKSVLELGAGIGRFTGELAKKAGQVIALDFIESVIKKNES---INGH------------YKNVKFMCADVTSPD-LNI 99 (475)
T ss_pred cCCCEEEEeCCCcCHHHHHHHhhCCEEEEEeCCHHHHHHHHH---Hhcc------------CCceEEEEecccccc-cCC
Confidence 35679999999999999999999889999998 568876543 2221 246788877764322 233
Q ss_pred cCCCccEEEEeccccCccC--HHHHHHHHHHhcCCCeEEEEEE
Q 027530 142 VAPPFDYIIGTDVVYAEHL--LEPLLQTIFALSGPKTTILLGY 182 (222)
Q Consensus 142 ~~~~fD~Ii~~d~~y~~~~--~~~ll~~~~~~l~~~g~~~l~~ 182 (222)
.+++||+|+++.++++... ...+++.+.++|+|||.+++..
T Consensus 100 ~~~~fD~I~~~~~l~~l~~~~~~~~l~~~~r~Lk~gG~l~~~d 142 (475)
T PLN02336 100 SDGSVDLIFSNWLLMYLSDKEVENLAERMVKWLKVGGYIFFRE 142 (475)
T ss_pred CCCCEEEEehhhhHHhCCHHHHHHHHHHHHHhcCCCeEEEEEe
Confidence 4678999999999887554 5789999999999999998853
No 110
>PRK07580 Mg-protoporphyrin IX methyl transferase; Validated
Probab=99.30 E-value=4.2e-11 Score=96.40 Aligned_cols=96 Identities=20% Similarity=0.266 Sum_probs=72.5
Q ss_pred CCCCeEEEeCCCccHHHHHHHHhCCEEEEecc-hhhHHHHHHHHHHhhccccccCCCCCCCCCceEEEEeecCCCccccc
Q 027530 63 LKGKRVIELGAGCGVAGFGMALLGCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSGNLLGSIQAVELDWGNEDHIKA 141 (222)
Q Consensus 63 ~~~~~vLelGcG~G~~~i~la~~g~~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~ 141 (222)
.++.+|||+|||+|..+..+++.+.+|+++|. +++++.++++....+. ..++.+...|+..
T Consensus 62 ~~~~~vLDvGcG~G~~~~~l~~~~~~v~~~D~s~~~i~~a~~~~~~~~~------------~~~i~~~~~d~~~------ 123 (230)
T PRK07580 62 LTGLRILDAGCGVGSLSIPLARRGAKVVASDISPQMVEEARERAPEAGL------------AGNITFEVGDLES------ 123 (230)
T ss_pred CCCCEEEEEeCCCCHHHHHHHHcCCEEEEEECCHHHHHHHHHHHHhcCC------------ccCcEEEEcCchh------
Confidence 45679999999999999999999999999999 5699999998876542 1367777755321
Q ss_pred cCCCccEEEEeccccCc--cCHHHHHHHHHHhcCCCe
Q 027530 142 VAPPFDYIIGTDVVYAE--HLLEPLLQTIFALSGPKT 176 (222)
Q Consensus 142 ~~~~fD~Ii~~d~~y~~--~~~~~ll~~~~~~l~~~g 176 (222)
..++||+|+++.++++. .....+++.+.+.+++++
T Consensus 124 ~~~~fD~v~~~~~l~~~~~~~~~~~l~~l~~~~~~~~ 160 (230)
T PRK07580 124 LLGRFDTVVCLDVLIHYPQEDAARMLAHLASLTRGSL 160 (230)
T ss_pred ccCCcCEEEEcchhhcCCHHHHHHHHHHHHhhcCCeE
Confidence 24689999999998553 345566777777665443
No 111
>PRK11188 rrmJ 23S rRNA methyltransferase J; Provisional
Probab=99.29 E-value=1.3e-10 Score=92.47 Aligned_cols=119 Identities=15% Similarity=0.121 Sum_probs=82.1
Q ss_pred CCCCeEEEeCCCccHHHHHHHHhC---CEEEEecchhhHHHHHHHHHHhhccccccCCCCCCCCCceEEEEeecCCCccc
Q 027530 63 LKGKRVIELGAGCGVAGFGMALLG---CNVITTDQIEVLPLLKRNVEWNTSRISQMNPGSGNLLGSIQAVELDWGNEDHI 139 (222)
Q Consensus 63 ~~~~~vLelGcG~G~~~i~la~~g---~~v~~~D~~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~ 139 (222)
.++.+|||||||+|..+..+++.. .+|+++|++++ +. ..++.+.+.|+.+....
T Consensus 50 ~~~~~VLDlG~GtG~~t~~l~~~~~~~~~V~aVDi~~~----------~~-------------~~~v~~i~~D~~~~~~~ 106 (209)
T PRK11188 50 KPGMTVVDLGAAPGGWSQYAVTQIGDKGRVIACDILPM----------DP-------------IVGVDFLQGDFRDELVL 106 (209)
T ss_pred CCCCEEEEEcccCCHHHHHHHHHcCCCceEEEEecccc----------cC-------------CCCcEEEecCCCChHHH
Confidence 467899999999999999888763 37999998552 11 12477888787764311
Q ss_pred -----cccCCCccEEEEeccccCccC-----------HHHHHHHHHHhcCCCeEEEEEEEEcChhHHHHHHHHHhcCCeE
Q 027530 140 -----KAVAPPFDYIIGTDVVYAEHL-----------LEPLLQTIFALSGPKTTILLGYEIRSTSVHEQMLQMWKSNFNV 203 (222)
Q Consensus 140 -----~~~~~~fD~Ii~~d~~y~~~~-----------~~~ll~~~~~~l~~~g~~~l~~~~r~~~~~~~f~~~~~~~~~v 203 (222)
.....+||+|+++...+.... ...+++.+.++|+|||.+++..... . ...+++..++..|.-
T Consensus 107 ~~i~~~~~~~~~D~V~S~~~~~~~g~~~~d~~~~~~~~~~~L~~~~~~LkpGG~~vi~~~~~-~-~~~~~l~~l~~~f~~ 184 (209)
T PRK11188 107 KALLERVGDSKVQVVMSDMAPNMSGTPAVDIPRAMYLVELALDMCRDVLAPGGSFVVKVFQG-E-GFDEYLREIRSLFTK 184 (209)
T ss_pred HHHHHHhCCCCCCEEecCCCCccCCChHHHHHHHHHHHHHHHHHHHHHcCCCCEEEEEEecC-c-CHHHHHHHHHhCceE
Confidence 123578999999764443221 2468899999999999998865432 2 246777777777644
Q ss_pred EEe
Q 027530 204 KLV 206 (222)
Q Consensus 204 ~~v 206 (222)
..+
T Consensus 185 v~~ 187 (209)
T PRK11188 185 VKV 187 (209)
T ss_pred EEE
Confidence 333
No 112
>KOG4300 consensus Predicted methyltransferase [General function prediction only]
Probab=99.28 E-value=2.9e-11 Score=93.71 Aligned_cols=106 Identities=16% Similarity=0.086 Sum_probs=81.7
Q ss_pred eEEEeCCCccHHHHHHH-HhCCEEEEecc-hhhHHHHHHHHHHhhccccccCCCCCCCCCceE-EEEeecCCCccccccC
Q 027530 67 RVIELGAGCGVAGFGMA-LLGCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSGNLLGSIQ-AVELDWGNEDHIKAVA 143 (222)
Q Consensus 67 ~vLelGcG~G~~~i~la-~~g~~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~v~-~~~~d~~~~~~~~~~~ 143 (222)
.|||+|||||..=-+.- ..+.+||++|. +.|-+.+.+.++++. ..++. ++..+-.+..+ ..+
T Consensus 79 ~vLEvgcGtG~Nfkfy~~~p~~svt~lDpn~~mee~~~ks~~E~k-------------~~~~~~fvva~ge~l~~--l~d 143 (252)
T KOG4300|consen 79 DVLEVGCGTGANFKFYPWKPINSVTCLDPNEKMEEIADKSAAEKK-------------PLQVERFVVADGENLPQ--LAD 143 (252)
T ss_pred ceEEecccCCCCcccccCCCCceEEEeCCcHHHHHHHHHHHhhcc-------------CcceEEEEeechhcCcc--ccc
Confidence 58999999996433222 34678999998 559999999888774 23444 44433332222 357
Q ss_pred CCccEEEEeccccCccCHHHHHHHHHHhcCCCeEEEEEEEEcCh
Q 027530 144 PPFDYIIGTDVVYAEHLLEPLLQTIFALSGPKTTILLGYEIRST 187 (222)
Q Consensus 144 ~~fD~Ii~~d~~y~~~~~~~ll~~~~~~l~~~g~~~l~~~~r~~ 187 (222)
.+||+||+.-++....+....++.+.++|+|||++++..+.+.+
T Consensus 144 ~s~DtVV~TlvLCSve~~~k~L~e~~rlLRpgG~iifiEHva~~ 187 (252)
T KOG4300|consen 144 GSYDTVVCTLVLCSVEDPVKQLNEVRRLLRPGGRIIFIEHVAGE 187 (252)
T ss_pred CCeeeEEEEEEEeccCCHHHHHHHHHHhcCCCcEEEEEeccccc
Confidence 89999999999999999999999999999999999998887765
No 113
>KOG2904 consensus Predicted methyltransferase [General function prediction only]
Probab=99.28 E-value=1.6e-10 Score=93.13 Aligned_cols=136 Identities=15% Similarity=0.183 Sum_probs=94.3
Q ss_pred HHHHHHHHhhhccCCCCCCCCCCCCeEEEeCCCccHHHHHHHHh-C-CEEEEecchh-hHHHHHHHHHHhhccccccCCC
Q 027530 42 SVVFVKYLEKNCRKGRFCPSKLKGKRVIELGAGCGVAGFGMALL-G-CNVITTDQIE-VLPLLKRNVEWNTSRISQMNPG 118 (222)
Q Consensus 42 ~~~la~~l~~~~~~~~~~~~~~~~~~vLelGcG~G~~~i~la~~-g-~~v~~~D~~~-~l~~~~~n~~~n~~~~~~~~~~ 118 (222)
+..+.+++....+. ...+++..+||+|||+|..++.++.. + ..|+++|.++ ++..+.+|++++++.
T Consensus 130 TEE~V~~Vid~~~~----~~~~~~~~ildlgtGSGaIslsll~~L~~~~v~AiD~S~~Ai~La~eN~qr~~l~------- 198 (328)
T KOG2904|consen 130 TEEWVEAVIDALNN----SEHSKHTHILDLGTGSGAISLSLLHGLPQCTVTAIDVSKAAIKLAKENAQRLKLS------- 198 (328)
T ss_pred HHHHHHHHHHHHhh----hhhcccceEEEecCCccHHHHHHHhcCCCceEEEEeccHHHHHHHHHHHHHHhhc-------
Confidence 45566666554321 23456668999999999999988754 3 3599999965 999999999999864
Q ss_pred CCCCCCceEEE----EeecCCCccccccCCCccEEEEeccccCccC--------------------------HHHHHHHH
Q 027530 119 SGNLLGSIQAV----ELDWGNEDHIKAVAPPFDYIIGTDVVYAEHL--------------------------LEPLLQTI 168 (222)
Q Consensus 119 ~~~~~~~v~~~----~~d~~~~~~~~~~~~~fD~Ii~~d~~y~~~~--------------------------~~~ll~~~ 168 (222)
+.+.+. +.+|.+.+. ...+++|++++|+++-..++ +..+..-.
T Consensus 199 -----g~i~v~~~~me~d~~~~~~--l~~~~~dllvsNPPYI~~dD~~~l~~eV~~yEp~lALdGg~eG~~~~~~~~~~a 271 (328)
T KOG2904|consen 199 -----GRIEVIHNIMESDASDEHP--LLEGKIDLLVSNPPYIRKDDNRQLKPEVRLYEPKLALDGGLEGYDNLVHYWLLA 271 (328)
T ss_pred -----CceEEEecccccccccccc--cccCceeEEecCCCcccccchhhcCchheecCchhhhccccchhHHHHHHHHhh
Confidence 566666 445544432 34689999999998744321 33455666
Q ss_pred HHhcCCCeEEEEEEEE--cChhHHHHHHH
Q 027530 169 FALSGPKTTILLGYEI--RSTSVHEQMLQ 195 (222)
Q Consensus 169 ~~~l~~~g~~~l~~~~--r~~~~~~~f~~ 195 (222)
.+.|+|||.+++.... +++.....+..
T Consensus 272 ~R~Lq~gg~~~le~~~~~~~~~lv~~~m~ 300 (328)
T KOG2904|consen 272 TRMLQPGGFEQLELVERKEHSYLVRIWMI 300 (328)
T ss_pred HhhcccCCeEEEEecccccCcHHHHHHHH
Confidence 7789999999998874 44433444443
No 114
>PF03602 Cons_hypoth95: Conserved hypothetical protein 95; InterPro: IPR004398 This entry contains Ribosomal RNA small subunit methyltransferase D as well as the putative rRNA methyltransferase YlbH. They methylate the guanosine in position 966 of 16S rRNA in the assembled 30S particle [].; GO: 0008168 methyltransferase activity, 0031167 rRNA methylation; PDB: 3P9N_A 2ESR_B 2IFT_A 1WS6_A 2FPO_B 2FHP_A.
Probab=99.27 E-value=9.6e-12 Score=96.90 Aligned_cols=110 Identities=24% Similarity=0.288 Sum_probs=78.9
Q ss_pred CCCCeEEEeCCCccHHHHHHHHhCC-EEEEecc-hhhHHHHHHHHHHhhccccccCCCCCCCCCceEEEEeecCCCcc-c
Q 027530 63 LKGKRVIELGAGCGVAGFGMALLGC-NVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSGNLLGSIQAVELDWGNEDH-I 139 (222)
Q Consensus 63 ~~~~~vLelGcG~G~~~i~la~~g~-~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~-~ 139 (222)
.+|.+||||.||+|.+|+.++..|| +|+++|. .+++..+++|++.-+.. .++.+...|...... .
T Consensus 41 ~~g~~vLDLFaGSGalGlEALSRGA~~v~fVE~~~~a~~~i~~N~~~l~~~------------~~~~v~~~d~~~~l~~~ 108 (183)
T PF03602_consen 41 LEGARVLDLFAGSGALGLEALSRGAKSVVFVEKNRKAIKIIKKNLEKLGLE------------DKIRVIKGDAFKFLLKL 108 (183)
T ss_dssp HTT-EEEETT-TTSHHHHHHHHTT-SEEEEEES-HHHHHHHHHHHHHHT-G------------GGEEEEESSHHHHHHHH
T ss_pred cCCCeEEEcCCccCccHHHHHhcCCCeEEEEECCHHHHHHHHHHHHHhCCC------------cceeeeccCHHHHHHhh
Confidence 6889999999999999999999998 6999999 67999999999977643 356777644332211 1
Q ss_pred cccCCCccEEEEeccccCccC-HHHHHHHHH--HhcCCCeEEEEEEEEc
Q 027530 140 KAVAPPFDYIIGTDVVYAEHL-LEPLLQTIF--ALSGPKTTILLGYEIR 185 (222)
Q Consensus 140 ~~~~~~fD~Ii~~d~~y~~~~-~~~ll~~~~--~~l~~~g~~~l~~~~r 185 (222)
.....+||+|++.+|+ .... ...++..+. .+|+++|.+++-+..+
T Consensus 109 ~~~~~~fDiIflDPPY-~~~~~~~~~l~~l~~~~~l~~~~~ii~E~~~~ 156 (183)
T PF03602_consen 109 AKKGEKFDIIFLDPPY-AKGLYYEELLELLAENNLLNEDGLIIIEHSKK 156 (183)
T ss_dssp HHCTS-EEEEEE--ST-TSCHHHHHHHHHHHHTTSEEEEEEEEEEEETT
T ss_pred cccCCCceEEEECCCc-ccchHHHHHHHHHHHCCCCCCCEEEEEEecCC
Confidence 1236799999976664 4444 588888887 5799999988877665
No 115
>KOG1500 consensus Protein arginine N-methyltransferase CARM1 [Posttranslational modification, protein turnover, chaperones; Transcription]
Probab=99.27 E-value=2.1e-11 Score=100.81 Aligned_cols=104 Identities=23% Similarity=0.332 Sum_probs=84.2
Q ss_pred CCCCCCCeEEEeCCCccHHHHHHHHhCC-EEEEecchhhHHHHHHHHHHhhccccccCCCCCCCCCceEEEEeecCCCcc
Q 027530 60 PSKLKGKRVIELGAGCGVAGFGMALLGC-NVITTDQIEVLPLLKRNVEWNTSRISQMNPGSGNLLGSIQAVELDWGNEDH 138 (222)
Q Consensus 60 ~~~~~~~~vLelGcG~G~~~i~la~~g~-~v~~~D~~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~ 138 (222)
..+|.|+.|||+|||+|+++..+++.|+ +|++++.++|.+.++.-++-|.+ .++|.++.+..++.+
T Consensus 173 ~sDF~~kiVlDVGaGSGILS~FAaqAGA~~vYAvEAS~MAqyA~~Lv~~N~~------------~~rItVI~GKiEdie- 239 (517)
T KOG1500|consen 173 HSDFQDKIVLDVGAGSGILSFFAAQAGAKKVYAVEASEMAQYARKLVASNNL------------ADRITVIPGKIEDIE- 239 (517)
T ss_pred ccccCCcEEEEecCCccHHHHHHHHhCcceEEEEehhHHHHHHHHHHhcCCc------------cceEEEccCcccccc-
Confidence 4789999999999999999999999998 59999999999999999988865 378999986665543
Q ss_pred ccccCCCccEEEEecccc---CccCHHHHHHHHHHhcCCCeEEEE
Q 027530 139 IKAVAPPFDYIIGTDVVY---AEHLLEPLLQTIFALSGPKTTILL 180 (222)
Q Consensus 139 ~~~~~~~fD~Ii~~d~~y---~~~~~~~ll~~~~~~l~~~g~~~l 180 (222)
.+++.|+||+-+.-| +..+++..+-. ++.|+|+|.++=
T Consensus 240 ---LPEk~DviISEPMG~mL~NERMLEsYl~A-rk~l~P~GkMfP 280 (517)
T KOG1500|consen 240 ---LPEKVDVIISEPMGYMLVNERMLESYLHA-RKWLKPNGKMFP 280 (517)
T ss_pred ---CchhccEEEeccchhhhhhHHHHHHHHHH-HhhcCCCCcccC
Confidence 367999999876654 44555554433 388999998774
No 116
>cd02440 AdoMet_MTases S-adenosylmethionine-dependent methyltransferases (SAM or AdoMet-MTase), class I; AdoMet-MTases are enzymes that use S-adenosyl-L-methionine (SAM or AdoMet) as a substrate for methyltransfer, creating the product S-adenosyl-L-homocysteine (AdoHcy). There are at least five structurally distinct families of AdoMet-MTases, class I being the largest and most diverse. Within this class enzymes can be classified by different substrate specificities (small molecules, lipids, nucleic acids, etc.) and different target atoms for methylation (nitrogen, oxygen, carbon, sulfur, etc.).
Probab=99.27 E-value=5.4e-11 Score=82.36 Aligned_cols=100 Identities=22% Similarity=0.270 Sum_probs=78.2
Q ss_pred eEEEeCCCccHHHHHHHH-hCCEEEEecc-hhhHHHHHHHHHHhhccccccCCCCCCCCCceEEEEeecCCCccccccCC
Q 027530 67 RVIELGAGCGVAGFGMAL-LGCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSGNLLGSIQAVELDWGNEDHIKAVAP 144 (222)
Q Consensus 67 ~vLelGcG~G~~~i~la~-~g~~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~ 144 (222)
+++|+|||+|..+..+++ .+.+++++|. ++++..++++...+. ..++++...++.+... ....
T Consensus 1 ~ildig~G~G~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~-------------~~~~~~~~~~~~~~~~--~~~~ 65 (107)
T cd02440 1 RVLDLGCGTGALALALASGPGARVTGVDISPVALELARKAAAALL-------------ADNVEVLKGDAEELPP--EADE 65 (107)
T ss_pred CeEEEcCCccHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHhccc-------------ccceEEEEcChhhhcc--ccCC
Confidence 589999999999988887 4558999998 558888876433332 2467777766665432 2356
Q ss_pred CccEEEEeccccC-ccCHHHHHHHHHHhcCCCeEEEEE
Q 027530 145 PFDYIIGTDVVYA-EHLLEPLLQTIFALSGPKTTILLG 181 (222)
Q Consensus 145 ~fD~Ii~~d~~y~-~~~~~~ll~~~~~~l~~~g~~~l~ 181 (222)
+||+|+++.++++ ......+++.+.+.++|+|.+++.
T Consensus 66 ~~d~i~~~~~~~~~~~~~~~~l~~~~~~l~~~g~~~~~ 103 (107)
T cd02440 66 SFDVIISDPPLHHLVEDLARFLEEARRLLKPGGVLVLT 103 (107)
T ss_pred ceEEEEEccceeehhhHHHHHHHHHHHHcCCCCEEEEE
Confidence 8999999999888 788889999999999999999876
No 117
>PRK14902 16S rRNA methyltransferase B; Provisional
Probab=99.25 E-value=2.7e-10 Score=100.57 Aligned_cols=105 Identities=18% Similarity=0.146 Sum_probs=78.1
Q ss_pred CCCCeEEEeCCCccHHHHHHHHh---CCEEEEecc-hhhHHHHHHHHHHhhccccccCCCCCCCCCceEEEEeecCCCcc
Q 027530 63 LKGKRVIELGAGCGVAGFGMALL---GCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSGNLLGSIQAVELDWGNEDH 138 (222)
Q Consensus 63 ~~~~~vLelGcG~G~~~i~la~~---g~~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~ 138 (222)
.++.+|||+|||+|..++.+++. ..+|+++|+ +++++.+++|++++++. ++++...|+.+...
T Consensus 249 ~~g~~VLDlgaG~G~~t~~la~~~~~~~~v~avDi~~~~l~~~~~n~~~~g~~-------------~v~~~~~D~~~~~~ 315 (444)
T PRK14902 249 KGGDTVLDACAAPGGKTTHIAELLKNTGKVVALDIHEHKLKLIEENAKRLGLT-------------NIETKALDARKVHE 315 (444)
T ss_pred CCCCEEEEeCCCCCHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHcCCC-------------eEEEEeCCcccccc
Confidence 35689999999999999988875 357999999 66999999999988742 47788766654321
Q ss_pred ccccCCCccEEEEeccccCcc----------------------CHHHHHHHHHHhcCCCeEEEEEE
Q 027530 139 IKAVAPPFDYIIGTDVVYAEH----------------------LLEPLLQTIFALSGPKTTILLGY 182 (222)
Q Consensus 139 ~~~~~~~fD~Ii~~d~~y~~~----------------------~~~~ll~~~~~~l~~~g~~~l~~ 182 (222)
...++||+|++..+.+... ....+++.+.++|+|||.++.+.
T Consensus 316 --~~~~~fD~Vl~D~Pcsg~G~~~~~p~~~~~~~~~~~~~l~~~q~~iL~~a~~~LkpGG~lvyst 379 (444)
T PRK14902 316 --KFAEKFDKILVDAPCSGLGVIRRKPDIKYNKTKEDIESLQEIQLEILESVAQYLKKGGILVYST 379 (444)
T ss_pred --hhcccCCEEEEcCCCCCCeeeccCcchhhcCCHHHHHHHHHHHHHHHHHHHHHcCCCCEEEEEc
Confidence 1136899999876532211 12357888889999999987654
No 118
>PHA03412 putative methyltransferase; Provisional
Probab=99.25 E-value=6.6e-11 Score=94.71 Aligned_cols=92 Identities=17% Similarity=0.161 Sum_probs=66.7
Q ss_pred CCCeEEEeCCCccHHHHHHHHh-----CCEEEEecc-hhhHHHHHHHHHHhhccccccCCCCCCCCCceEEEEeecCCCc
Q 027530 64 KGKRVIELGAGCGVAGFGMALL-----GCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSGNLLGSIQAVELDWGNED 137 (222)
Q Consensus 64 ~~~~vLelGcG~G~~~i~la~~-----g~~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~v~~~~~d~~~~~ 137 (222)
.+.+|||+|||+|.+++.+++. ..+|+++|+ +.+++.+++|+. ++.+...|.....
T Consensus 49 ~~grVLDlG~GSG~Lalala~~~~~~~~~~V~aVEID~~Al~~Ar~n~~------------------~~~~~~~D~~~~~ 110 (241)
T PHA03412 49 TSGSVVDLCAGIGGLSFAMVHMMMYAKPREIVCVELNHTYYKLGKRIVP------------------EATWINADALTTE 110 (241)
T ss_pred CCCEEEEccChHHHHHHHHHHhcccCCCcEEEEEECCHHHHHHHHhhcc------------------CCEEEEcchhccc
Confidence 3679999999999999988864 347999999 569999998754 2345554443221
Q ss_pred cccccCCCccEEEEeccccCcc------------CHHHHHHHHHHhcCCCeE
Q 027530 138 HIKAVAPPFDYIIGTDVVYAEH------------LLEPLLQTIFALSGPKTT 177 (222)
Q Consensus 138 ~~~~~~~~fD~Ii~~d~~y~~~------------~~~~ll~~~~~~l~~~g~ 177 (222)
.+.+||+||+|++++... .+..++....+++++|+.
T Consensus 111 ----~~~~FDlIIsNPPY~~~~~~d~~ar~~g~~~~~~li~~A~~Ll~~G~~ 158 (241)
T PHA03412 111 ----FDTLFDMAISNPPFGKIKTSDFKGKYTGAEFEYKVIERASQIARQGTF 158 (241)
T ss_pred ----ccCCccEEEECCCCCCccccccCCcccccHHHHHHHHHHHHHcCCCEE
Confidence 246899999999987321 145578888886666664
No 119
>PHA03411 putative methyltransferase; Provisional
Probab=99.25 E-value=5.8e-11 Score=97.09 Aligned_cols=98 Identities=17% Similarity=0.136 Sum_probs=72.7
Q ss_pred CCeEEEeCCCccHHHHHHHHh--CCEEEEecc-hhhHHHHHHHHHHhhccccccCCCCCCCCCceEEEEeecCCCccccc
Q 027530 65 GKRVIELGAGCGVAGFGMALL--GCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSGNLLGSIQAVELDWGNEDHIKA 141 (222)
Q Consensus 65 ~~~vLelGcG~G~~~i~la~~--g~~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~ 141 (222)
+.+|||+|||+|.+++.++.. +.+|+++|+ +++++.+++|.. ++.+...|..+..
T Consensus 65 ~grVLDLGcGsGilsl~la~r~~~~~V~gVDisp~al~~Ar~n~~------------------~v~~v~~D~~e~~---- 122 (279)
T PHA03411 65 TGKVLDLCAGIGRLSFCMLHRCKPEKIVCVELNPEFARIGKRLLP------------------EAEWITSDVFEFE---- 122 (279)
T ss_pred CCeEEEcCCCCCHHHHHHHHhCCCCEEEEEECCHHHHHHHHHhCc------------------CCEEEECchhhhc----
Confidence 458999999999999988775 458999999 669999887632 3455554443221
Q ss_pred cCCCccEEEEeccccCccC--------------------HHHHHHHHHHhcCCCeEEEEEEEE
Q 027530 142 VAPPFDYIIGTDVVYAEHL--------------------LEPLLQTIFALSGPKTTILLGYEI 184 (222)
Q Consensus 142 ~~~~fD~Ii~~d~~y~~~~--------------------~~~ll~~~~~~l~~~g~~~l~~~~ 184 (222)
...+||+|++++++++... +.++++....+|+|+|.+++++..
T Consensus 123 ~~~kFDlIIsNPPF~~l~~~d~~~~~~~~GG~~g~~~l~~~~~l~~v~~~L~p~G~~~~~yss 185 (279)
T PHA03411 123 SNEKFDVVISNPPFGKINTTDTKDVFEYTGGEFEFKVMTLGQKFADVGYFIVPTGSAGFAYSG 185 (279)
T ss_pred ccCCCcEEEEcCCccccCchhhhhhhhhccCccccccccHHHHHhhhHheecCCceEEEEEec
Confidence 2468999999999986211 356677777889999999888754
No 120
>PTZ00146 fibrillarin; Provisional
Probab=99.25 E-value=6e-10 Score=92.07 Aligned_cols=133 Identities=12% Similarity=0.064 Sum_probs=84.1
Q ss_pred cccccccchHH-HHHHHHhhhccCCCCCCCCCCCCeEEEeCCCccHHHHHHHHhC---CEEEEecc-hhhHHHHHHHHHH
Q 027530 33 HLGTTVWDASV-VFVKYLEKNCRKGRFCPSKLKGKRVIELGAGCGVAGFGMALLG---CNVITTDQ-IEVLPLLKRNVEW 107 (222)
Q Consensus 33 ~~g~~~W~~~~-~la~~l~~~~~~~~~~~~~~~~~~vLelGcG~G~~~i~la~~g---~~v~~~D~-~~~l~~~~~n~~~ 107 (222)
..-.++|+.-. .||..+..-+.. ....++.+|||||||+|..+..++... ..|+++|+ +++++.+.+.+..
T Consensus 104 ~~eyR~w~p~rSKlaa~i~~g~~~----l~IkpG~~VLDLGaG~G~~t~~lAdiVG~~G~VyAVD~s~r~~~dLl~~ak~ 179 (293)
T PTZ00146 104 KIEYRVWNPFRSKLAAAIIGGVAN----IPIKPGSKVLYLGAASGTTVSHVSDLVGPEGVVYAVEFSHRSGRDLTNMAKK 179 (293)
T ss_pred cceeeeeCCcccHHHHHHHCCcce----eccCCCCEEEEeCCcCCHHHHHHHHHhCCCCEEEEEECcHHHHHHHHHHhhh
Confidence 34478998533 344444332210 134577899999999999999999763 36999998 4566544443321
Q ss_pred hhccccccCCCCCCCCCceEEEEeecCCCccccccCCCccEEEEeccccCccCHHHHHHHHHHhcCCCeEEEEEEEEcC
Q 027530 108 NTSRISQMNPGSGNLLGSIQAVELDWGNEDHIKAVAPPFDYIIGTDVVYAEHLLEPLLQTIFALSGPKTTILLGYEIRS 186 (222)
Q Consensus 108 n~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~fD~Ii~~d~~y~~~~~~~ll~~~~~~l~~~g~~~l~~~~r~ 186 (222)
. .++.++..|...........+.||+|++.-. ..+....++..+.++|||+|.+++..+.+.
T Consensus 180 r---------------~NI~~I~~Da~~p~~y~~~~~~vDvV~~Dva--~pdq~~il~~na~r~LKpGG~~vI~ika~~ 241 (293)
T PTZ00146 180 R---------------PNIVPIIEDARYPQKYRMLVPMVDVIFADVA--QPDQARIVALNAQYFLKNGGHFIISIKANC 241 (293)
T ss_pred c---------------CCCEEEECCccChhhhhcccCCCCEEEEeCC--CcchHHHHHHHHHHhccCCCEEEEEEeccc
Confidence 1 2455666554332212222357999987643 344455677788999999999999766544
No 121
>COG4976 Predicted methyltransferase (contains TPR repeat) [General function prediction only]
Probab=99.25 E-value=8.2e-12 Score=98.15 Aligned_cols=130 Identities=18% Similarity=0.245 Sum_probs=91.4
Q ss_pred CeEEEeCCCccHHHHHHHHhCCEEEEecchh-hHHHHHHHHHHhhccccccCCCCCCCCCceEEEEeecCCCccccccCC
Q 027530 66 KRVIELGAGCGVAGFGMALLGCNVITTDQIE-VLPLLKRNVEWNTSRISQMNPGSGNLLGSIQAVELDWGNEDHIKAVAP 144 (222)
Q Consensus 66 ~~vLelGcG~G~~~i~la~~g~~v~~~D~~~-~l~~~~~n~~~n~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~ 144 (222)
+++||||||||+.|..+-.+..+.+++|+++ |++.+.++=-...+.. .+-+. +.. ...+.
T Consensus 127 ~~~lDLGCGTGL~G~~lR~~a~~ltGvDiS~nMl~kA~eKg~YD~L~~----------Aea~~-----Fl~----~~~~e 187 (287)
T COG4976 127 RRMLDLGCGTGLTGEALRDMADRLTGVDISENMLAKAHEKGLYDTLYV----------AEAVL-----FLE----DLTQE 187 (287)
T ss_pred ceeeecccCcCcccHhHHHHHhhccCCchhHHHHHHHHhccchHHHHH----------HHHHH-----Hhh----hccCC
Confidence 6899999999999999999989999999965 8888765422111110 00000 111 12367
Q ss_pred CccEEEEeccccCccCHHHHHHHHHHhcCCCeEEEEEEEE-------------cChhHHHHHHHHH-hcCCeEEEecCCC
Q 027530 145 PFDYIIGTDVVYAEHLLEPLLQTIFALSGPKTTILLGYEI-------------RSTSVHEQMLQMW-KSNFNVKLVPKAK 210 (222)
Q Consensus 145 ~fD~Ii~~d~~y~~~~~~~ll~~~~~~l~~~g~~~l~~~~-------------r~~~~~~~f~~~~-~~~~~v~~v~~~~ 210 (222)
+||+|.+.|++-....++.++-....+|+|||.+.++... |..+........+ ..+|.+..+....
T Consensus 188 r~DLi~AaDVl~YlG~Le~~~~~aa~~L~~gGlfaFSvE~l~~~~~f~l~ps~RyAH~~~YVr~~l~~~Gl~~i~~~~tt 267 (287)
T COG4976 188 RFDLIVAADVLPYLGALEGLFAGAAGLLAPGGLFAFSVETLPDDGGFVLGPSQRYAHSESYVRALLAASGLEVIAIEDTT 267 (287)
T ss_pred cccchhhhhHHHhhcchhhHHHHHHHhcCCCceEEEEecccCCCCCeecchhhhhccchHHHHHHHHhcCceEEEeeccc
Confidence 8999999999988999999999999999999999887632 2222223333444 3588887777766
Q ss_pred CCcc
Q 027530 211 ESTM 214 (222)
Q Consensus 211 ~~~~ 214 (222)
++..
T Consensus 268 iR~d 271 (287)
T COG4976 268 IRRD 271 (287)
T ss_pred chhh
Confidence 5543
No 122
>PRK13943 protein-L-isoaspartate O-methyltransferase; Provisional
Probab=99.24 E-value=1.6e-10 Score=97.43 Aligned_cols=99 Identities=23% Similarity=0.202 Sum_probs=72.7
Q ss_pred CCCCCeEEEeCCCccHHHHHHHHhCC---EEEEecc-hhhHHHHHHHHHHhhccccccCCCCCCCCCceEEEEeecCCCc
Q 027530 62 KLKGKRVIELGAGCGVAGFGMALLGC---NVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSGNLLGSIQAVELDWGNED 137 (222)
Q Consensus 62 ~~~~~~vLelGcG~G~~~i~la~~g~---~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~v~~~~~d~~~~~ 137 (222)
..++.+|||+|||+|..++.+++... .|+++|. +++++.+++|++.++. .++.+...|..+.
T Consensus 78 i~~g~~VLDIG~GtG~~a~~LA~~~~~~g~VvgVDis~~~l~~Ar~~l~~~g~-------------~nV~~i~gD~~~~- 143 (322)
T PRK13943 78 LDKGMRVLEIGGGTGYNAAVMSRVVGEKGLVVSVEYSRKICEIAKRNVRRLGI-------------ENVIFVCGDGYYG- 143 (322)
T ss_pred CCCCCEEEEEeCCccHHHHHHHHhcCCCCEEEEEECCHHHHHHHHHHHHHcCC-------------CcEEEEeCChhhc-
Confidence 34678999999999999999987642 5999998 6699999999988763 3577776553321
Q ss_pred cccccCCCccEEEEeccccCccCHHHHHHHHHHhcCCCeEEEEEE
Q 027530 138 HIKAVAPPFDYIIGTDVVYAEHLLEPLLQTIFALSGPKTTILLGY 182 (222)
Q Consensus 138 ~~~~~~~~fD~Ii~~d~~y~~~~~~~ll~~~~~~l~~~g~~~l~~ 182 (222)
.....+||+|+++..+ ..+...+.+.|+|||++++..
T Consensus 144 --~~~~~~fD~Ii~~~g~------~~ip~~~~~~LkpgG~Lvv~~ 180 (322)
T PRK13943 144 --VPEFAPYDVIFVTVGV------DEVPETWFTQLKEGGRVIVPI 180 (322)
T ss_pred --ccccCCccEEEECCch------HHhHHHHHHhcCCCCEEEEEe
Confidence 1123579999986332 234455677899999987754
No 123
>PRK10901 16S rRNA methyltransferase B; Provisional
Probab=99.24 E-value=2.9e-10 Score=99.87 Aligned_cols=105 Identities=21% Similarity=0.231 Sum_probs=77.1
Q ss_pred CCCCeEEEeCCCccHHHHHHHHhC--CEEEEecc-hhhHHHHHHHHHHhhccccccCCCCCCCCCceEEEEeecCCCccc
Q 027530 63 LKGKRVIELGAGCGVAGFGMALLG--CNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSGNLLGSIQAVELDWGNEDHI 139 (222)
Q Consensus 63 ~~~~~vLelGcG~G~~~i~la~~g--~~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~ 139 (222)
.+|.+|||+|||+|..++.++..+ .+|+++|. ++++..+++|+++++. .+++...|..+....
T Consensus 243 ~~g~~VLDlgaG~G~~t~~la~~~~~~~v~a~D~s~~~l~~~~~n~~~~g~--------------~~~~~~~D~~~~~~~ 308 (427)
T PRK10901 243 QNGERVLDACAAPGGKTAHILELAPQAQVVALDIDAQRLERVRENLQRLGL--------------KATVIVGDARDPAQW 308 (427)
T ss_pred CCCCEEEEeCCCCChHHHHHHHHcCCCEEEEEeCCHHHHHHHHHHHHHcCC--------------CeEEEEcCcccchhh
Confidence 467899999999999999998875 48999999 6699999999998763 245666554432110
Q ss_pred cccCCCccEEEEeccccCc----------------------cCHHHHHHHHHHhcCCCeEEEEEE
Q 027530 140 KAVAPPFDYIIGTDVVYAE----------------------HLLEPLLQTIFALSGPKTTILLGY 182 (222)
Q Consensus 140 ~~~~~~fD~Ii~~d~~y~~----------------------~~~~~ll~~~~~~l~~~g~~~l~~ 182 (222)
....+||.|++..+.... .....++..+.++|+|||.+++++
T Consensus 309 -~~~~~fD~Vl~D~Pcs~~G~~~~~p~~~~~~~~~~l~~l~~~q~~iL~~a~~~LkpGG~lvyst 372 (427)
T PRK10901 309 -WDGQPFDRILLDAPCSATGVIRRHPDIKWLRRPEDIAALAALQSEILDALWPLLKPGGTLLYAT 372 (427)
T ss_pred -cccCCCCEEEECCCCCcccccccCccccccCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEe
Confidence 124679999976654311 012368888889999999988765
No 124
>PRK06202 hypothetical protein; Provisional
Probab=99.24 E-value=7.3e-11 Score=95.42 Aligned_cols=102 Identities=19% Similarity=0.187 Sum_probs=72.5
Q ss_pred CCCeEEEeCCCccHHHHHHHHh----C--CEEEEecc-hhhHHHHHHHHHHhhccccccCCCCCCCCCceEEEEeecCCC
Q 027530 64 KGKRVIELGAGCGVAGFGMALL----G--CNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSGNLLGSIQAVELDWGNE 136 (222)
Q Consensus 64 ~~~~vLelGcG~G~~~i~la~~----g--~~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~v~~~~~d~~~~ 136 (222)
++.+|||||||+|..+..+++. | .+|+++|. ++|++.++++...++ +.+...+-...
T Consensus 60 ~~~~iLDlGcG~G~~~~~L~~~~~~~g~~~~v~gvD~s~~~l~~a~~~~~~~~----------------~~~~~~~~~~l 123 (232)
T PRK06202 60 RPLTLLDIGCGGGDLAIDLARWARRDGLRLEVTAIDPDPRAVAFARANPRRPG----------------VTFRQAVSDEL 123 (232)
T ss_pred CCcEEEEeccCCCHHHHHHHHHHHhCCCCcEEEEEcCCHHHHHHHHhccccCC----------------CeEEEEecccc
Confidence 5579999999999998888753 4 48999999 669999988765332 33333322221
Q ss_pred ccccccCCCccEEEEeccccCccC--HHHHHHHHHHhcCCCeEEEEEEEEcC
Q 027530 137 DHIKAVAPPFDYIIGTDVVYAEHL--LEPLLQTIFALSGPKTTILLGYEIRS 186 (222)
Q Consensus 137 ~~~~~~~~~fD~Ii~~d~~y~~~~--~~~ll~~~~~~l~~~g~~~l~~~~r~ 186 (222)
+..+++||+|+++.++++... ...+++.+.++++ |.+++....|.
T Consensus 124 ---~~~~~~fD~V~~~~~lhh~~d~~~~~~l~~~~r~~~--~~~~i~dl~~~ 170 (232)
T PRK06202 124 ---VAEGERFDVVTSNHFLHHLDDAEVVRLLADSAALAR--RLVLHNDLIRS 170 (232)
T ss_pred ---cccCCCccEEEECCeeecCChHHHHHHHHHHHHhcC--eeEEEeccccC
Confidence 223578999999999988655 4568899998887 55555555554
No 125
>PLN02781 Probable caffeoyl-CoA O-methyltransferase
Probab=99.23 E-value=1.1e-10 Score=94.52 Aligned_cols=103 Identities=15% Similarity=0.113 Sum_probs=78.1
Q ss_pred CCCeEEEeCCCccHHHHHHHHh---CCEEEEecc-hhhHHHHHHHHHHhhccccccCCCCCCCCCceEEEEeecCCCcc-
Q 027530 64 KGKRVIELGAGCGVAGFGMALL---GCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSGNLLGSIQAVELDWGNEDH- 138 (222)
Q Consensus 64 ~~~~vLelGcG~G~~~i~la~~---g~~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~- 138 (222)
+.++|||+|||+|..++.++.. +.+|+++|. +++++.+++|++.+++. .++++...|+.+...
T Consensus 68 ~~~~vLEiGt~~G~s~l~la~~~~~~g~v~tiD~d~~~~~~A~~n~~~~gl~------------~~i~~~~gda~~~L~~ 135 (234)
T PLN02781 68 NAKNTLEIGVFTGYSLLTTALALPEDGRITAIDIDKEAYEVGLEFIKKAGVD------------HKINFIQSDALSALDQ 135 (234)
T ss_pred CCCEEEEecCcccHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCC------------CcEEEEEccHHHHHHH
Confidence 5689999999999988877754 358999999 67999999999998853 578888877654311
Q ss_pred cc--ccCCCccEEEEeccccCccCHHHHHHHHHHhcCCCeEEEEE
Q 027530 139 IK--AVAPPFDYIIGTDVVYAEHLLEPLLQTIFALSGPKTTILLG 181 (222)
Q Consensus 139 ~~--~~~~~fD~Ii~~d~~y~~~~~~~ll~~~~~~l~~~g~~~l~ 181 (222)
+. ...++||+|+.... ......++..+.++++|||.+++-
T Consensus 136 l~~~~~~~~fD~VfiDa~---k~~y~~~~~~~~~ll~~GG~ii~d 177 (234)
T PLN02781 136 LLNNDPKPEFDFAFVDAD---KPNYVHFHEQLLKLVKVGGIIAFD 177 (234)
T ss_pred HHhCCCCCCCCEEEECCC---HHHHHHHHHHHHHhcCCCeEEEEE
Confidence 10 11468999986421 345667888999999999988763
No 126
>PLN03075 nicotianamine synthase; Provisional
Probab=99.23 E-value=1.8e-10 Score=95.43 Aligned_cols=104 Identities=12% Similarity=0.021 Sum_probs=80.1
Q ss_pred CCCeEEEeCCCcc-HHHHHHHH-h--CCEEEEecc-hhhHHHHHHHHHH-hhccccccCCCCCCCCCceEEEEeecCCCc
Q 027530 64 KGKRVIELGAGCG-VAGFGMAL-L--GCNVITTDQ-IEVLPLLKRNVEW-NTSRISQMNPGSGNLLGSIQAVELDWGNED 137 (222)
Q Consensus 64 ~~~~vLelGcG~G-~~~i~la~-~--g~~v~~~D~-~~~l~~~~~n~~~-n~~~~~~~~~~~~~~~~~v~~~~~d~~~~~ 137 (222)
..++|+|||||.| +.++.++. . +.+++++|. +++++.|+++++. .++ ..+++|...|..+..
T Consensus 123 ~p~~VldIGcGpgpltaiilaa~~~p~~~~~giD~d~~ai~~Ar~~~~~~~gL------------~~rV~F~~~Da~~~~ 190 (296)
T PLN03075 123 VPTKVAFVGSGPLPLTSIVLAKHHLPTTSFHNFDIDPSANDVARRLVSSDPDL------------SKRMFFHTADVMDVT 190 (296)
T ss_pred CCCEEEEECCCCcHHHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHhhhccCc------------cCCcEEEECchhhcc
Confidence 6689999999965 55665553 3 347999999 6799999999864 332 357999987765431
Q ss_pred cccccCCCccEEEEeccccC-ccCHHHHHHHHHHhcCCCeEEEEEE
Q 027530 138 HIKAVAPPFDYIIGTDVVYA-EHLLEPLLQTIFALSGPKTTILLGY 182 (222)
Q Consensus 138 ~~~~~~~~fD~Ii~~d~~y~-~~~~~~ll~~~~~~l~~~g~~~l~~ 182 (222)
....+||+|++.-++|+ ......+++.+.+.|+|||.+++..
T Consensus 191 ---~~l~~FDlVF~~ALi~~dk~~k~~vL~~l~~~LkPGG~Lvlr~ 233 (296)
T PLN03075 191 ---ESLKEYDVVFLAALVGMDKEEKVKVIEHLGKHMAPGALLMLRS 233 (296)
T ss_pred ---cccCCcCEEEEecccccccccHHHHHHHHHHhcCCCcEEEEec
Confidence 12468999999955565 3788999999999999999998865
No 127
>smart00138 MeTrc Methyltransferase, chemotaxis proteins. Methylates methyl-accepting chemotaxis proteins to form gamma-glutamyl methyl ester residues.
Probab=99.23 E-value=4.8e-11 Score=98.34 Aligned_cols=118 Identities=15% Similarity=0.152 Sum_probs=77.8
Q ss_pred CCCeEEEeCCCccH----HHHHHHHh-------CCEEEEecc-hhhHHHHHHHHHH----hhcccc-------ccCC---
Q 027530 64 KGKRVIELGAGCGV----AGFGMALL-------GCNVITTDQ-IEVLPLLKRNVEW----NTSRIS-------QMNP--- 117 (222)
Q Consensus 64 ~~~~vLelGcG~G~----~~i~la~~-------g~~v~~~D~-~~~l~~~~~n~~~----n~~~~~-------~~~~--- 117 (222)
++.+|||+|||+|- +++.++.. +.+|+++|+ ++|++.|++++.. .+++.. ....
T Consensus 99 ~~~ri~d~GCgtGee~YslA~~l~e~~~~~~~~~~~I~g~Dis~~~L~~Ar~~~y~~~~~~~~~~~~~~~yf~~~~~~~~ 178 (264)
T smart00138 99 RRVRIWSAGCSTGEEPYSLAMLLAETLPKAREPDVKILATDIDLKALEKARAGIYPERELEDLPKALLARYFSRVEDKYR 178 (264)
T ss_pred CCEEEEeccccCChHHHHHHHHHHHHhhhcCCCCeEEEEEECCHHHHHHHHcCCCCHHHHhcCCHHHHhhhEEeCCCeEE
Confidence 44689999999995 45555553 247999999 5699999986421 111000 0000
Q ss_pred CCCCCCCceEEEEeecCCCccccccCCCccEEEEeccccCcc--CHHHHHHHHHHhcCCCeEEEEEEEE
Q 027530 118 GSGNLLGSIQAVELDWGNEDHIKAVAPPFDYIIGTDVVYAEH--LLEPLLQTIFALSGPKTTILLGYEI 184 (222)
Q Consensus 118 ~~~~~~~~v~~~~~d~~~~~~~~~~~~~fD~Ii~~d~~y~~~--~~~~ll~~~~~~l~~~g~~~l~~~~ 184 (222)
.++....+|.+.+.|..+. +...++||+|++..++.+.+ ....+++.+.+.|+|||.++++...
T Consensus 179 v~~~ir~~V~F~~~dl~~~---~~~~~~fD~I~crnvl~yf~~~~~~~~l~~l~~~L~pGG~L~lg~~E 244 (264)
T smart00138 179 VKPELKERVRFAKHNLLAE---SPPLGDFDLIFCRNVLIYFDEPTQRKLLNRFAEALKPGGYLFLGHSE 244 (264)
T ss_pred EChHHhCcCEEeeccCCCC---CCccCCCCEEEechhHHhCCHHHHHHHHHHHHHHhCCCeEEEEECcc
Confidence 0001123677777666543 22367899999988876643 4567999999999999999987643
No 128
>PRK14901 16S rRNA methyltransferase B; Provisional
Probab=99.22 E-value=6.6e-10 Score=97.82 Aligned_cols=107 Identities=20% Similarity=0.157 Sum_probs=77.5
Q ss_pred CCCCeEEEeCCCccHHHHHHHHh---CCEEEEecc-hhhHHHHHHHHHHhhccccccCCCCCCCCCceEEEEeecCCCcc
Q 027530 63 LKGKRVIELGAGCGVAGFGMALL---GCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSGNLLGSIQAVELDWGNEDH 138 (222)
Q Consensus 63 ~~~~~vLelGcG~G~~~i~la~~---g~~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~ 138 (222)
.+|.+|||+|||+|..++.++++ ..+|+++|. +++++.+++|+++++.. ++.+...|..+...
T Consensus 251 ~~g~~VLDl~ag~G~kt~~la~~~~~~g~v~a~D~~~~rl~~~~~n~~r~g~~-------------~v~~~~~D~~~~~~ 317 (434)
T PRK14901 251 QPGEVILDACAAPGGKTTHIAELMGDQGEIWAVDRSASRLKKLQENAQRLGLK-------------SIKILAADSRNLLE 317 (434)
T ss_pred CCcCEEEEeCCCCchhHHHHHHHhCCCceEEEEcCCHHHHHHHHHHHHHcCCC-------------eEEEEeCChhhccc
Confidence 46789999999999999988876 247999998 66999999999988742 57777755543321
Q ss_pred c-cccCCCccEEEEecc------ccCccC----------------HHHHHHHHHHhcCCCeEEEEEE
Q 027530 139 I-KAVAPPFDYIIGTDV------VYAEHL----------------LEPLLQTIFALSGPKTTILLGY 182 (222)
Q Consensus 139 ~-~~~~~~fD~Ii~~d~------~y~~~~----------------~~~ll~~~~~~l~~~g~~~l~~ 182 (222)
. ....++||.|+...+ +...+. ...++..+.++|+|||+++.++
T Consensus 318 ~~~~~~~~fD~Vl~DaPCSg~G~~~r~p~~~~~~~~~~~~~l~~~Q~~iL~~a~~~lkpgG~lvyst 384 (434)
T PRK14901 318 LKPQWRGYFDRILLDAPCSGLGTLHRHPDARWRQTPEKIQELAPLQAELLESLAPLLKPGGTLVYAT 384 (434)
T ss_pred ccccccccCCEEEEeCCCCcccccccCcchhhhCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEe
Confidence 1 022468999997533 221111 3567888899999999887654
No 129
>PRK11088 rrmA 23S rRNA methyltransferase A; Provisional
Probab=99.20 E-value=1.5e-10 Score=95.80 Aligned_cols=93 Identities=11% Similarity=0.066 Sum_probs=67.7
Q ss_pred CCCeEEEeCCCccHHHHHHHHhC-----CEEEEecc-hhhHHHHHHHHHHhhccccccCCCCCCCCCceEEEEeecCCCc
Q 027530 64 KGKRVIELGAGCGVAGFGMALLG-----CNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSGNLLGSIQAVELDWGNED 137 (222)
Q Consensus 64 ~~~~vLelGcG~G~~~i~la~~g-----~~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~v~~~~~d~~~~~ 137 (222)
.+.+|||+|||+|..+..+++.. ..|+++|+ +++++.++++. .++.+...|..+
T Consensus 85 ~~~~vLDiGcG~G~~~~~l~~~~~~~~~~~v~giD~s~~~l~~A~~~~------------------~~~~~~~~d~~~-- 144 (272)
T PRK11088 85 KATALLDIGCGEGYYTHALADALPEITTMQLFGLDISKVAIKYAAKRY------------------PQVTFCVASSHR-- 144 (272)
T ss_pred CCCeEEEECCcCCHHHHHHHHhcccccCCeEEEECCCHHHHHHHHHhC------------------CCCeEEEeeccc--
Confidence 44689999999999998887652 36999999 56998886542 145566555432
Q ss_pred cccccCCCccEEEEeccccCccCHHHHHHHHHHhcCCCeEEEEEEEE
Q 027530 138 HIKAVAPPFDYIIGTDVVYAEHLLEPLLQTIFALSGPKTTILLGYEI 184 (222)
Q Consensus 138 ~~~~~~~~fD~Ii~~d~~y~~~~~~~ll~~~~~~l~~~g~~~l~~~~ 184 (222)
.+..+++||+|++... ...++.+.++|+|||.++++.+.
T Consensus 145 -lp~~~~sfD~I~~~~~-------~~~~~e~~rvLkpgG~li~~~p~ 183 (272)
T PRK11088 145 -LPFADQSLDAIIRIYA-------PCKAEELARVVKPGGIVITVTPG 183 (272)
T ss_pred -CCCcCCceeEEEEecC-------CCCHHHHHhhccCCCEEEEEeCC
Confidence 3445678999997532 23467889999999999987654
No 130
>smart00650 rADc Ribosomal RNA adenine dimethylases.
Probab=99.20 E-value=3e-10 Score=87.48 Aligned_cols=99 Identities=14% Similarity=0.135 Sum_probs=69.3
Q ss_pred CCCCeEEEeCCCccHHHHHHHHhCCEEEEecc-hhhHHHHHHHHHHhhccccccCCCCCCCCCceEEEEeecCCCccccc
Q 027530 63 LKGKRVIELGAGCGVAGFGMALLGCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSGNLLGSIQAVELDWGNEDHIKA 141 (222)
Q Consensus 63 ~~~~~vLelGcG~G~~~i~la~~g~~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~ 141 (222)
.++.+|||+|||+|.++..+++.+.+|+++|. +.+++.+++|+..+ .++++...|..+.. .
T Consensus 12 ~~~~~vLEiG~G~G~lt~~l~~~~~~v~~vE~~~~~~~~~~~~~~~~---------------~~v~ii~~D~~~~~---~ 73 (169)
T smart00650 12 RPGDTVLEIGPGKGALTEELLERAARVTAIEIDPRLAPRLREKFAAA---------------DNLTVIHGDALKFD---L 73 (169)
T ss_pred CCcCEEEEECCCccHHHHHHHhcCCeEEEEECCHHHHHHHHHHhccC---------------CCEEEEECchhcCC---c
Confidence 46679999999999999999998889999999 56999999887531 36778876665432 2
Q ss_pred cCCCccEEEEeccccCccCHHHHHHHHHHh--cCCCeEEEEEE
Q 027530 142 VAPPFDYIIGTDVVYAEHLLEPLLQTIFAL--SGPKTTILLGY 182 (222)
Q Consensus 142 ~~~~fD~Ii~~d~~y~~~~~~~ll~~~~~~--l~~~g~~~l~~ 182 (222)
.+..||.|+++.+++. ..+++..+.+. +.++|.+++..
T Consensus 74 ~~~~~d~vi~n~Py~~---~~~~i~~~l~~~~~~~~~~l~~q~ 113 (169)
T smart00650 74 PKLQPYKVVGNLPYNI---STPILFKLLEEPPAFRDAVLMVQK 113 (169)
T ss_pred cccCCCEEEECCCccc---HHHHHHHHHhcCCCcceEEEEEEH
Confidence 2346999999877643 23333333332 34666665543
No 131
>KOG3191 consensus Predicted N6-DNA-methyltransferase [Translation, ribosomal structure and biogenesis]
Probab=99.20 E-value=7.4e-10 Score=84.25 Aligned_cols=128 Identities=19% Similarity=0.241 Sum_probs=93.6
Q ss_pred CCeEEEeCCCccHHHHHHHHh-C--CEEEEecc-hhhHHHHHHHHHHhhccccccCCCCCCCCCceEEEEeecCCCcccc
Q 027530 65 GKRVIELGAGCGVAGFGMALL-G--CNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSGNLLGSIQAVELDWGNEDHIK 140 (222)
Q Consensus 65 ~~~vLelGcG~G~~~i~la~~-g--~~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~ 140 (222)
.+-|||||||+|.++-.+++. + +.+.+||+ +++++..++.++.|+. .+..++-|..+.-
T Consensus 44 ~~i~lEIG~GSGvvstfL~~~i~~~~~~latDiNp~A~~~Tl~TA~~n~~--------------~~~~V~tdl~~~l--- 106 (209)
T KOG3191|consen 44 PEICLEIGCGSGVVSTFLASVIGPQALYLATDINPEALEATLETARCNRV--------------HIDVVRTDLLSGL--- 106 (209)
T ss_pred ceeEEEecCCcchHHHHHHHhcCCCceEEEecCCHHHHHHHHHHHHhcCC--------------ccceeehhHHhhh---
Confidence 357999999999999988875 3 34889999 7899999999998874 4566664443221
Q ss_pred ccCCCccEEEEeccccCc---------------------cCHHHHHHHHHHhcCCCeEEEEEEEEcChhHHHHHHHHH-h
Q 027530 141 AVAPPFDYIIGTDVVYAE---------------------HLLEPLLQTIFALSGPKTTILLGYEIRSTSVHEQMLQMW-K 198 (222)
Q Consensus 141 ~~~~~fD~Ii~~d~~y~~---------------------~~~~~ll~~~~~~l~~~g~~~l~~~~r~~~~~~~f~~~~-~ 198 (222)
..++.|+++.++++--. .....++..+..+|+|.|.+|+..-.++.. ++.++.+ +
T Consensus 107 -~~~~VDvLvfNPPYVpt~~~~i~~~~i~~a~aGG~~Gr~v~d~ll~~v~~iLSp~Gv~Ylv~~~~N~p--~ei~k~l~~ 183 (209)
T KOG3191|consen 107 -RNESVDVLVFNPPYVPTSDEEIGDEGIASAWAGGKDGREVTDRLLPQVPDILSPRGVFYLVALRANKP--KEILKILEK 183 (209)
T ss_pred -ccCCccEEEECCCcCcCCcccchhHHHHHHHhcCcchHHHHHHHHhhhhhhcCcCceEEeeehhhcCH--HHHHHHHhh
Confidence 13899999999886321 125668888889999999999998877764 5556655 4
Q ss_pred cCCeEEEecCCCCC
Q 027530 199 SNFNVKLVPKAKES 212 (222)
Q Consensus 199 ~~~~v~~v~~~~~~ 212 (222)
.+|.+.....++..
T Consensus 184 ~g~~~~~~~~Rk~~ 197 (209)
T KOG3191|consen 184 KGYGVRIAMQRKAG 197 (209)
T ss_pred cccceeEEEEEecC
Confidence 57777665554443
No 132
>PF01135 PCMT: Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT); InterPro: IPR000682 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (2.1.1.77 from EC) (PCMT) [] (which is also known as L-isoaspartyl protein carboxyl methyltransferase) is an enzyme that catalyses the transfer of a methyl group from S-adenosylmethionine to the free carboxyl groups of D-aspartyl or L-isoaspartyl residues in a variety of peptides and proteins. The enzyme does not act on normal L-aspartyl residues L-isoaspartyl and D-aspartyl are the products of the spontaneous deamidation and/or isomerisation of normal L-aspartyl and L-asparaginyl residues in proteins. PCMT plays a role in the repair and/or degradation of these damaged proteins; the enzymatic methyl esterification of the abnormal residues can lead to their conversion to normal L-aspartyl residues. The SAM domain is present in most of these proteins.; GO: 0004719 protein-L-isoaspartate (D-aspartate) O-methyltransferase activity, 0006464 protein modification process; PDB: 3LBF_A 1DL5_B 1JG3_B 1JG2_A 1JG1_A 1JG4_A 2YXE_A 2PBF_B 1VBF_C 1R18_A ....
Probab=99.19 E-value=1.6e-10 Score=91.79 Aligned_cols=101 Identities=24% Similarity=0.299 Sum_probs=72.1
Q ss_pred CCCCCCeEEEeCCCccHHHHHHHHh-CC--EEEEecc-hhhHHHHHHHHHHhhccccccCCCCCCCCCceEEEEeecCCC
Q 027530 61 SKLKGKRVIELGAGCGVAGFGMALL-GC--NVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSGNLLGSIQAVELDWGNE 136 (222)
Q Consensus 61 ~~~~~~~vLelGcG~G~~~i~la~~-g~--~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~v~~~~~d~~~~ 136 (222)
...+|.+|||||||+|..+..++.+ |. +|+++|. +++.+.+++|++..+. .++.+...|-
T Consensus 69 ~l~pg~~VLeIGtGsGY~aAlla~lvg~~g~Vv~vE~~~~l~~~A~~~l~~~~~-------------~nv~~~~gdg--- 132 (209)
T PF01135_consen 69 DLKPGDRVLEIGTGSGYQAALLAHLVGPVGRVVSVERDPELAERARRNLARLGI-------------DNVEVVVGDG--- 132 (209)
T ss_dssp TC-TT-EEEEES-TTSHHHHHHHHHHSTTEEEEEEESBHHHHHHHHHHHHHHTT-------------HSEEEEES-G---
T ss_pred hcCCCCEEEEecCCCcHHHHHHHHhcCccceEEEECccHHHHHHHHHHHHHhcc-------------CceeEEEcch---
Confidence 4568899999999999999999987 43 5999998 6799999999998874 3788887553
Q ss_pred ccccccCCCccEEEEeccccCccCHHHHHHHHHHhcCCCeEEEEEEE
Q 027530 137 DHIKAVAPPFDYIIGTDVVYAEHLLEPLLQTIFALSGPKTTILLGYE 183 (222)
Q Consensus 137 ~~~~~~~~~fD~Ii~~d~~y~~~~~~~ll~~~~~~l~~~g~~~l~~~ 183 (222)
........+||.|+..-.. . .+-..+.+.|++||++++-..
T Consensus 133 ~~g~~~~apfD~I~v~~a~--~----~ip~~l~~qL~~gGrLV~pi~ 173 (209)
T PF01135_consen 133 SEGWPEEAPFDRIIVTAAV--P----EIPEALLEQLKPGGRLVAPIG 173 (209)
T ss_dssp GGTTGGG-SEEEEEESSBB--S----S--HHHHHTEEEEEEEEEEES
T ss_pred hhccccCCCcCEEEEeecc--c----hHHHHHHHhcCCCcEEEEEEc
Confidence 2222235689999987655 2 233456677899999877544
No 133
>KOG3420 consensus Predicted RNA methylase [Translation, ribosomal structure and biogenesis]
Probab=99.19 E-value=2.8e-11 Score=88.70 Aligned_cols=107 Identities=21% Similarity=0.315 Sum_probs=78.4
Q ss_pred CeEEEEeeCCCCccccccccchHHHHHHHHhhhccCCCCCCCCCCCCeEEEeCCCccHHHHHHHHhCCE-EEEecc-hhh
Q 027530 20 GHQLQFSQDPNSKHLGTTVWDASVVFVKYLEKNCRKGRFCPSKLKGKRVIELGAGCGVAGFGMALLGCN-VITTDQ-IEV 97 (222)
Q Consensus 20 ~~~~~i~q~~~~~~~g~~~W~~~~~la~~l~~~~~~~~~~~~~~~~~~vLelGcG~G~~~i~la~~g~~-v~~~D~-~~~ 97 (222)
...+-++|+|+.++.+ .-+..-+.+. -.+++|++++|||||+|.+++..+..+.+ |+|+|+ +++
T Consensus 18 Kpk~~LEQY~T~p~iA-------asM~~~Ih~T-------ygdiEgkkl~DLgcgcGmLs~a~sm~~~e~vlGfDIdpeA 83 (185)
T KOG3420|consen 18 KPKLLLEQYPTRPHIA-------ASMLYTIHNT-------YGDIEGKKLKDLGCGCGMLSIAFSMPKNESVLGFDIDPEA 83 (185)
T ss_pred ccchhhhhCCCcHHHH-------HHHHHHHHhh-------hccccCcchhhhcCchhhhHHHhhcCCCceEEeeecCHHH
Confidence 3456677888665543 2333344443 36789999999999999999988888885 999999 789
Q ss_pred HHHHHHHHHHhhccccccCCCCCCCCCceEEEEeecCCCccccccCCCccEEEEeccccC
Q 027530 98 LPLLKRNVEWNTSRISQMNPGSGNLLGSIQAVELDWGNEDHIKAVAPPFDYIIGTDVVYA 157 (222)
Q Consensus 98 l~~~~~n~~~n~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~fD~Ii~~d~~y~ 157 (222)
++.+.+|++.-.+ ++.+.+.+..+.. ...+.||..+.++++--
T Consensus 84 LEIf~rNaeEfEv--------------qidlLqcdildle---~~~g~fDtaviNppFGT 126 (185)
T KOG3420|consen 84 LEIFTRNAEEFEV--------------QIDLLQCDILDLE---LKGGIFDTAVINPPFGT 126 (185)
T ss_pred HHHHhhchHHhhh--------------hhheeeeeccchh---ccCCeEeeEEecCCCCc
Confidence 9999999986543 4566665554432 23588999999988743
No 134
>PRK14121 tRNA (guanine-N(7)-)-methyltransferase; Provisional
Probab=99.19 E-value=2.1e-10 Score=98.40 Aligned_cols=107 Identities=16% Similarity=0.080 Sum_probs=82.6
Q ss_pred CCCeEEEeCCCccHHHHHHHHhC--CEEEEecc-hhhHHHHHHHHHHhhccccccCCCCCCCCCceEEEEeecCCCcccc
Q 027530 64 KGKRVIELGAGCGVAGFGMALLG--CNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSGNLLGSIQAVELDWGNEDHIK 140 (222)
Q Consensus 64 ~~~~vLelGcG~G~~~i~la~~g--~~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~ 140 (222)
.+..+||||||+|...+.+|+.. ..++|+|+ ..++..+.+++..+++ .++.+.+.|...... .
T Consensus 122 ~~p~vLEIGcGsG~~ll~lA~~~P~~~~iGIEI~~~~i~~a~~ka~~~gL-------------~NV~~i~~DA~~ll~-~ 187 (390)
T PRK14121 122 QEKILIEIGFGSGRHLLYQAKNNPNKLFIGIEIHTPSIEQVLKQIELLNL-------------KNLLIINYDARLLLE-L 187 (390)
T ss_pred CCCeEEEEcCcccHHHHHHHHhCCCCCEEEEECCHHHHHHHHHHHHHcCC-------------CcEEEEECCHHHhhh-h
Confidence 45689999999999999999885 46999998 6699999999988764 378888877543221 2
Q ss_pred ccCCCccEEEEeccccCcc------CHHHHHHHHHHhcCCCeEEEEEEEE
Q 027530 141 AVAPPFDYIIGTDVVYAEH------LLEPLLQTIFALSGPKTTILLGYEI 184 (222)
Q Consensus 141 ~~~~~fD~Ii~~d~~y~~~------~~~~ll~~~~~~l~~~g~~~l~~~~ 184 (222)
..++++|.|+.+-+.-|.. ....+++.+.++|+|||.+++.+..
T Consensus 188 ~~~~s~D~I~lnFPdPW~KkrHRRlv~~~fL~e~~RvLkpGG~l~l~TD~ 237 (390)
T PRK14121 188 LPSNSVEKIFVHFPVPWDKKPHRRVISEDFLNEALRVLKPGGTLELRTDS 237 (390)
T ss_pred CCCCceeEEEEeCCCCccccchhhccHHHHHHHHHHHcCCCcEEEEEEEC
Confidence 3467899999875443322 1267999999999999999987654
No 135
>TIGR00446 nop2p NOL1/NOP2/sun family putative RNA methylase.
Probab=99.18 E-value=5.4e-10 Score=92.15 Aligned_cols=105 Identities=17% Similarity=0.177 Sum_probs=76.8
Q ss_pred CCCCeEEEeCCCccHHHHHHHHh---CCEEEEecc-hhhHHHHHHHHHHhhccccccCCCCCCCCCceEEEEeecCCCcc
Q 027530 63 LKGKRVIELGAGCGVAGFGMALL---GCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSGNLLGSIQAVELDWGNEDH 138 (222)
Q Consensus 63 ~~~~~vLelGcG~G~~~i~la~~---g~~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~ 138 (222)
.+|.+|||+|||+|..++.++.+ ...|+++|. +++++.+++|+++++. .++.+...|....
T Consensus 70 ~~g~~VLDl~ag~G~kt~~la~~~~~~g~v~a~D~~~~~l~~~~~n~~~~g~-------------~~v~~~~~D~~~~-- 134 (264)
T TIGR00446 70 DPPERVLDMAAAPGGKTTQISALMKNEGAIVANEFSKSRTKVLIANINRCGV-------------LNVAVTNFDGRVF-- 134 (264)
T ss_pred CCcCEEEEECCCchHHHHHHHHHcCCCCEEEEEcCCHHHHHHHHHHHHHcCC-------------CcEEEecCCHHHh--
Confidence 36789999999999999888875 247999999 6699999999998874 2577776554322
Q ss_pred ccccCCCccEEEEeccccCcc----------------------CHHHHHHHHHHhcCCCeEEEEEEE
Q 027530 139 IKAVAPPFDYIIGTDVVYAEH----------------------LLEPLLQTIFALSGPKTTILLGYE 183 (222)
Q Consensus 139 ~~~~~~~fD~Ii~~d~~y~~~----------------------~~~~ll~~~~~~l~~~g~~~l~~~ 183 (222)
....++||.|+...+-.... ....+++...++|+|||+++.+.-
T Consensus 135 -~~~~~~fD~Vl~D~Pcsg~G~~~~~p~~~~~~~~~~~~~l~~~q~~iL~~a~~~lkpgG~lvYstc 200 (264)
T TIGR00446 135 -GAAVPKFDAILLDAPCSGEGVIRKDPSRKKNWSEEDIQEISALQKELIDSAFDALKPGGVLVYSTC 200 (264)
T ss_pred -hhhccCCCEEEEcCCCCCCcccccChhhhhcCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEeC
Confidence 11235699999765432210 124488888889999998877653
No 136
>COG2265 TrmA SAM-dependent methyltransferases related to tRNA (uracil-5-)-methyltransferase [Translation, ribosomal structure and biogenesis]
Probab=99.18 E-value=3.2e-10 Score=99.02 Aligned_cols=143 Identities=14% Similarity=0.093 Sum_probs=105.6
Q ss_pred HHHHHHHHhhhccCCCCCCCCCCCCeEEEeCCCccHHHHHHHHhCCEEEEecc-hhhHHHHHHHHHHhhccccccCCCCC
Q 027530 42 SVVFVKYLEKNCRKGRFCPSKLKGKRVIELGAGCGVAGFGMALLGCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSG 120 (222)
Q Consensus 42 ~~~la~~l~~~~~~~~~~~~~~~~~~vLelGcG~G~~~i~la~~g~~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~ 120 (222)
+..|.+++.+.+ ...++.++||+-||.|.+|+.+|+...+|+++|+ +++++.|++|++.|+..
T Consensus 278 ~ekl~~~a~~~~-------~~~~~~~vlDlYCGvG~f~l~lA~~~~~V~gvEi~~~aV~~A~~NA~~n~i~--------- 341 (432)
T COG2265 278 AEKLYETALEWL-------ELAGGERVLDLYCGVGTFGLPLAKRVKKVHGVEISPEAVEAAQENAAANGID--------- 341 (432)
T ss_pred HHHHHHHHHHHH-------hhcCCCEEEEeccCCChhhhhhcccCCEEEEEecCHHHHHHHHHHHHHcCCC---------
Confidence 456666666653 3446679999999999999999999999999998 77999999999999853
Q ss_pred CCCCceEEEEeecCCCccccccCCCccEEEEeccccCccCHHHHHHHHHHhcCCCeEEEEEEEEcChhHHHHHHHHH-hc
Q 027530 121 NLLGSIQAVELDWGNEDHIKAVAPPFDYIIGTDVVYAEHLLEPLLQTIFALSGPKTTILLGYEIRSTSVHEQMLQMW-KS 199 (222)
Q Consensus 121 ~~~~~v~~~~~d~~~~~~~~~~~~~fD~Ii~~d~~y~~~~~~~ll~~~~~~l~~~g~~~l~~~~r~~~~~~~f~~~~-~~ 199 (222)
++++...+..+..........+|.||..++- ...-+.+++.+.+. +|..++|+++.+ .++.+-+..+ ..
T Consensus 342 ----N~~f~~~~ae~~~~~~~~~~~~d~VvvDPPR--~G~~~~~lk~l~~~-~p~~IvYVSCNP---~TlaRDl~~L~~~ 411 (432)
T COG2265 342 ----NVEFIAGDAEEFTPAWWEGYKPDVVVVDPPR--AGADREVLKQLAKL-KPKRIVYVSCNP---ATLARDLAILAST 411 (432)
T ss_pred ----cEEEEeCCHHHHhhhccccCCCCEEEECCCC--CCCCHHHHHHHHhc-CCCcEEEEeCCH---HHHHHHHHHHHhC
Confidence 6888886655443322234689999998875 55556788887765 778899999865 3444555555 45
Q ss_pred CCeEEEecCCC
Q 027530 200 NFNVKLVPKAK 210 (222)
Q Consensus 200 ~~~v~~v~~~~ 210 (222)
++.++++.--+
T Consensus 412 gy~i~~v~~~D 422 (432)
T COG2265 412 GYEIERVQPFD 422 (432)
T ss_pred CeEEEEEEEec
Confidence 77676655433
No 137
>KOG2920 consensus Predicted methyltransferase [General function prediction only]
Probab=99.17 E-value=9.8e-12 Score=100.99 Aligned_cols=148 Identities=22% Similarity=0.267 Sum_probs=99.7
Q ss_pred CCCccccccccchHHHHHHHHhhhccCCCCCCCCCCCCeEEEeCCCccHHHHHHHHhCC-EEEEecc-hhhHHH-HHHHH
Q 027530 29 PNSKHLGTTVWDASVVFVKYLEKNCRKGRFCPSKLKGKRVIELGAGCGVAGFGMALLGC-NVITTDQ-IEVLPL-LKRNV 105 (222)
Q Consensus 29 ~~~~~~g~~~W~~~~~la~~l~~~~~~~~~~~~~~~~~~vLelGcG~G~~~i~la~~g~-~v~~~D~-~~~l~~-~~~n~ 105 (222)
|+.+..|.++|.|+..|..++.+.. .+ .-.+.|++|||||||+|+.++.+...|+ .+.+.|+ .+.++. .-.|+
T Consensus 85 p~vyEGg~k~wecS~dl~~~l~~e~-~~---~~~~~~k~vLELgCg~~Lp~i~~~~~~~~~~~fqD~na~vl~~~t~pn~ 160 (282)
T KOG2920|consen 85 PGVYEGGLKLWECSVDLLPYLKEEI-GA---QMSFSGKRVLELGCGAALPGIFAFVKGAVSVHFQDFNAEVLRLVTLPNI 160 (282)
T ss_pred CceeecceEEeecHHHHHHHHHHHh-hh---heEecCceeEecCCcccccchhhhhhccceeeeEecchhheeeecccce
Confidence 5578899999999999999998663 11 2457899999999999999999999994 7999998 556632 22233
Q ss_pred HHhhccccccCCCCCCCCCceEEEEe---ecCCCccccccCCCccEEEEeccccCccCHHHH-HHHHHHhcCCCeEEEEE
Q 027530 106 EWNTSRISQMNPGSGNLLGSIQAVEL---DWGNEDHIKAVAPPFDYIIGTDVVYAEHLLEPL-LQTIFALSGPKTTILLG 181 (222)
Q Consensus 106 ~~n~~~~~~~~~~~~~~~~~v~~~~~---d~~~~~~~~~~~~~fD~Ii~~d~~y~~~~~~~l-l~~~~~~l~~~g~~~l~ 181 (222)
..|-....+ .++...-..+..- ||.-... ..-.||+|+++..+|.......+ ......++++.|++|++
T Consensus 161 ~~~~~~~~~----~~e~~~~~~i~~s~l~dg~~~~t---~~~~ydlIlsSetiy~~~~~~~~~~~~r~~l~~~D~~~~~a 233 (282)
T KOG2920|consen 161 LVNSHAGVE----EKENHKVDEILNSLLSDGVFNHT---ERTHYDLILSSETIYSIDSLAVLYLLHRPCLLKTDGVFYVA 233 (282)
T ss_pred ecchhhhhh----hhhcccceeccccccccchhhhc---cccchhhhhhhhhhhCcchhhhhHhhhhhhcCCccchhhhh
Confidence 322211000 0000111112222 5521111 01389999999999999888888 66667778999999998
Q ss_pred EEEcCh
Q 027530 182 YEIRST 187 (222)
Q Consensus 182 ~~~r~~ 187 (222)
.+.-+.
T Consensus 234 AK~~yF 239 (282)
T KOG2920|consen 234 AKKLYF 239 (282)
T ss_pred hHhhcc
Confidence 765443
No 138
>TIGR03438 probable methyltransferase. This model represents a distinct set of uncharacterized proteins found in the bacteria. Analysis by PSI-BLAST shows remote sequence homology to methyltransferases
Probab=99.17 E-value=3e-10 Score=95.40 Aligned_cols=110 Identities=15% Similarity=0.113 Sum_probs=75.6
Q ss_pred CCCeEEEeCCCccHHHHHHHHh---CCEEEEecc-hhhHHHHHHHHHHhhccccccCCCCCCCCCceEEEEeecCCCccc
Q 027530 64 KGKRVIELGAGCGVAGFGMALL---GCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSGNLLGSIQAVELDWGNEDHI 139 (222)
Q Consensus 64 ~~~~vLelGcG~G~~~i~la~~---g~~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~ 139 (222)
++.+|||||||+|..+..+++. +.+|+++|+ ++|++.+++++..... ..++...+.|..+....
T Consensus 63 ~~~~iLELGcGtG~~t~~Ll~~l~~~~~~~~iDiS~~mL~~a~~~l~~~~p------------~~~v~~i~gD~~~~~~~ 130 (301)
T TIGR03438 63 AGCELVELGSGSSRKTRLLLDALRQPARYVPIDISADALKESAAALAADYP------------QLEVHGICADFTQPLAL 130 (301)
T ss_pred CCCeEEecCCCcchhHHHHHHhhccCCeEEEEECCHHHHHHHHHHHHhhCC------------CceEEEEEEcccchhhh
Confidence 5578999999999999888876 568999999 5699999998875321 13456667666543221
Q ss_pred ccc--CCCccEEEEeccccCc--cCHHHHHHHHHHhcCCCeEEEEEEEEc
Q 027530 140 KAV--APPFDYIIGTDVVYAE--HLLEPLLQTIFALSGPKTTILLGYEIR 185 (222)
Q Consensus 140 ~~~--~~~fD~Ii~~d~~y~~--~~~~~ll~~~~~~l~~~g~~~l~~~~r 185 (222)
... .....++++..++++. .....+++.+.+.|+|||.+++.....
T Consensus 131 ~~~~~~~~~~~~~~gs~~~~~~~~e~~~~L~~i~~~L~pgG~~lig~d~~ 180 (301)
T TIGR03438 131 PPEPAAGRRLGFFPGSTIGNFTPEEAVAFLRRIRQLLGPGGGLLIGVDLV 180 (301)
T ss_pred hcccccCCeEEEEecccccCCCHHHHHHHHHHHHHhcCCCCEEEEeccCC
Confidence 111 1122334444456553 346679999999999999999876543
No 139
>KOG1271 consensus Methyltransferases [General function prediction only]
Probab=99.16 E-value=2.8e-10 Score=86.61 Aligned_cols=146 Identities=21% Similarity=0.285 Sum_probs=97.8
Q ss_pred hHHHHHHHHhhhccCCCCCCCCCCCC-eEEEeCCCccHHHHHHHHhCC--EEEEecch-hhHHHHHHHHHHhhccccccC
Q 027530 41 ASVVFVKYLEKNCRKGRFCPSKLKGK-RVIELGAGCGVAGFGMALLGC--NVITTDQI-EVLPLLKRNVEWNTSRISQMN 116 (222)
Q Consensus 41 ~~~~la~~l~~~~~~~~~~~~~~~~~-~vLelGcG~G~~~i~la~~g~--~v~~~D~~-~~l~~~~~n~~~n~~~~~~~~ 116 (222)
+-..+.+|+..++...++ .+.. +|||||||.|.+-.-|++.|. +.+++|++ .++++|+.-+++++.+
T Consensus 47 ae~riv~wl~d~~~~~rv----~~~A~~VlDLGtGNG~~L~~L~~egf~~~L~GvDYs~~AV~LA~niAe~~~~~----- 117 (227)
T KOG1271|consen 47 AEERIVDWLKDLIVISRV----SKQADRVLDLGTGNGHLLFQLAKEGFQSKLTGVDYSEKAVELAQNIAERDGFS----- 117 (227)
T ss_pred HHHHHHHHHHhhhhhhhh----cccccceeeccCCchHHHHHHHHhcCCCCccccccCHHHHHHHHHHHHhcCCC-----
Confidence 456778888877542221 1222 899999999999999999887 49999995 5999988777777753
Q ss_pred CCCCCCCCceEEEEeecCCCccccccCCCccEEEEeccccC--------ccCHHHHHHHHHHhcCCCeEEEEEEEEcChh
Q 027530 117 PGSGNLLGSIQAVELDWGNEDHIKAVAPPFDYIIGTDVVYA--------EHLLEPLLQTIFALSGPKTTILLGYEIRSTS 188 (222)
Q Consensus 117 ~~~~~~~~~v~~~~~d~~~~~~~~~~~~~fD~Ii~~d~~y~--------~~~~~~ll~~~~~~l~~~g~~~l~~~~r~~~ 188 (222)
..|++.++|..++ ....++||+|+--..+-. ..-+.-.+..+.++|+|+|+++|..=. .
T Consensus 118 -------n~I~f~q~DI~~~---~~~~~qfdlvlDKGT~DAisLs~d~~~~r~~~Y~d~v~~ll~~~gifvItSCN---~ 184 (227)
T KOG1271|consen 118 -------NEIRFQQLDITDP---DFLSGQFDLVLDKGTLDAISLSPDGPVGRLVVYLDSVEKLLSPGGIFVITSCN---F 184 (227)
T ss_pred -------cceeEEEeeccCC---cccccceeEEeecCceeeeecCCCCcccceeeehhhHhhccCCCcEEEEEecC---c
Confidence 4599999888765 223567777753322211 111234678889999999999885433 2
Q ss_pred HHHHHHHHHhc-CCeE-EEecC
Q 027530 189 VHEQMLQMWKS-NFNV-KLVPK 208 (222)
Q Consensus 189 ~~~~f~~~~~~-~~~v-~~v~~ 208 (222)
+..++.+.+.. +|.+ ..||.
T Consensus 185 T~dELv~~f~~~~f~~~~tvp~ 206 (227)
T KOG1271|consen 185 TKDELVEEFENFNFEYLSTVPT 206 (227)
T ss_pred cHHHHHHHHhcCCeEEEEeecc
Confidence 34566666654 4654 34443
No 140
>PRK14903 16S rRNA methyltransferase B; Provisional
Probab=99.16 E-value=6.5e-10 Score=97.62 Aligned_cols=106 Identities=18% Similarity=0.140 Sum_probs=78.0
Q ss_pred CCCCeEEEeCCCccHHHHHHHHh---CCEEEEecc-hhhHHHHHHHHHHhhccccccCCCCCCCCCceEEEEeecCCCcc
Q 027530 63 LKGKRVIELGAGCGVAGFGMALL---GCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSGNLLGSIQAVELDWGNEDH 138 (222)
Q Consensus 63 ~~~~~vLelGcG~G~~~i~la~~---g~~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~ 138 (222)
.+|.+|||+|||+|..++.++.+ +.+|+++|. +++++.+++|+++.++ .++.+...|+.+...
T Consensus 236 ~~g~~VLD~cagpGgkt~~la~~~~~~g~V~a~Dis~~rl~~~~~n~~r~g~-------------~~v~~~~~Da~~l~~ 302 (431)
T PRK14903 236 EPGLRVLDTCAAPGGKTTAIAELMKDQGKILAVDISREKIQLVEKHAKRLKL-------------SSIEIKIADAERLTE 302 (431)
T ss_pred CCCCEEEEeCCCccHHHHHHHHHcCCCCEEEEEECCHHHHHHHHHHHHHcCC-------------CeEEEEECchhhhhh
Confidence 46789999999999999888875 458999999 5699999999998764 257777766543321
Q ss_pred ccccCCCccEEEEeccccCcc----------------------CHHHHHHHHHHhcCCCeEEEEEEE
Q 027530 139 IKAVAPPFDYIIGTDVVYAEH----------------------LLEPLLQTIFALSGPKTTILLGYE 183 (222)
Q Consensus 139 ~~~~~~~fD~Ii~~d~~y~~~----------------------~~~~ll~~~~~~l~~~g~~~l~~~ 183 (222)
...++||.|++..+-.... ....++..+.++|+|||.++.++-
T Consensus 303 --~~~~~fD~Vl~DaPCsg~G~~~~~p~~~~~~~~~~~~~l~~~Q~~iL~~a~~~LkpGG~LvYsTC 367 (431)
T PRK14903 303 --YVQDTFDRILVDAPCTSLGTARNHPEVLRRVNKEDFKKLSEIQLRIVSQAWKLLEKGGILLYSTC 367 (431)
T ss_pred --hhhccCCEEEECCCCCCCccccCChHHHHhCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEEC
Confidence 2246799999754432111 124568888899999999877653
No 141
>PRK11727 23S rRNA mA1618 methyltransferase; Provisional
Probab=99.15 E-value=1.6e-10 Score=97.18 Aligned_cols=84 Identities=18% Similarity=0.135 Sum_probs=59.8
Q ss_pred CCCeEEEeCCCccHHHHHHHHh--CCEEEEecc-hhhHHHHHHHHHHh-hccccccCCCCCCCCCceEEEE-eecCCCcc
Q 027530 64 KGKRVIELGAGCGVAGFGMALL--GCNVITTDQ-IEVLPLLKRNVEWN-TSRISQMNPGSGNLLGSIQAVE-LDWGNEDH 138 (222)
Q Consensus 64 ~~~~vLelGcG~G~~~i~la~~--g~~v~~~D~-~~~l~~~~~n~~~n-~~~~~~~~~~~~~~~~~v~~~~-~d~~~~~~ 138 (222)
.+.++||||||+|.+...++.. +.+++++|+ +.+++.|++|++.| ++. .++.+.. .+-.+...
T Consensus 114 ~~~~vLDIGtGag~I~~lLa~~~~~~~~~atDId~~Al~~A~~Nv~~Np~l~------------~~I~~~~~~~~~~i~~ 181 (321)
T PRK11727 114 ANVRVLDIGVGANCIYPLIGVHEYGWRFVGSDIDPQALASAQAIISANPGLN------------GAIRLRLQKDSKAIFK 181 (321)
T ss_pred CCceEEEecCCccHHHHHHHhhCCCCEEEEEeCCHHHHHHHHHHHHhccCCc------------CcEEEEEccchhhhhh
Confidence 4578999999999777666654 668999999 66999999999999 553 4566543 11111111
Q ss_pred -ccccCCCccEEEEeccccCcc
Q 027530 139 -IKAVAPPFDYIIGTDVVYAEH 159 (222)
Q Consensus 139 -~~~~~~~fD~Ii~~d~~y~~~ 159 (222)
.....++||+|++|+++|...
T Consensus 182 ~i~~~~~~fDlivcNPPf~~s~ 203 (321)
T PRK11727 182 GIIHKNERFDATLCNPPFHASA 203 (321)
T ss_pred cccccCCceEEEEeCCCCcCcc
Confidence 111356899999999988643
No 142
>PRK04457 spermidine synthase; Provisional
Probab=99.15 E-value=4.2e-10 Score=92.62 Aligned_cols=122 Identities=11% Similarity=0.142 Sum_probs=85.5
Q ss_pred CCCeEEEeCCCccHHHHHHHHh--CCEEEEecc-hhhHHHHHHHHHHhhccccccCCCCCCCCCceEEEEeecCCCcccc
Q 027530 64 KGKRVIELGAGCGVAGFGMALL--GCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSGNLLGSIQAVELDWGNEDHIK 140 (222)
Q Consensus 64 ~~~~vLelGcG~G~~~i~la~~--g~~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~ 140 (222)
+.++|||||||+|.++..+++. +.+|+++|+ +++++.+++++..+. ...++++...|..+.. .
T Consensus 66 ~~~~vL~IG~G~G~l~~~l~~~~p~~~v~~VEidp~vi~~A~~~f~~~~------------~~~rv~v~~~Da~~~l--~ 131 (262)
T PRK04457 66 RPQHILQIGLGGGSLAKFIYTYLPDTRQTAVEINPQVIAVARNHFELPE------------NGERFEVIEADGAEYI--A 131 (262)
T ss_pred CCCEEEEECCCHhHHHHHHHHhCCCCeEEEEECCHHHHHHHHHHcCCCC------------CCCceEEEECCHHHHH--H
Confidence 4578999999999999988876 457999999 679999999876443 1247888875543321 1
Q ss_pred ccCCCccEEEEeccccCcc------CHHHHHHHHHHhcCCCeEEEEEEEEcChhHHHHHHHHHhcCCe
Q 027530 141 AVAPPFDYIIGTDVVYAEH------LLEPLLQTIFALSGPKTTILLGYEIRSTSVHEQMLQMWKSNFN 202 (222)
Q Consensus 141 ~~~~~fD~Ii~~d~~y~~~------~~~~ll~~~~~~l~~~g~~~l~~~~r~~~~~~~f~~~~~~~~~ 202 (222)
...++||+|+.. . |+.. ....+++.+.++|+|||++++....+.. ....+.+.++..|.
T Consensus 132 ~~~~~yD~I~~D-~-~~~~~~~~~l~t~efl~~~~~~L~pgGvlvin~~~~~~-~~~~~l~~l~~~F~ 196 (262)
T PRK04457 132 VHRHSTDVILVD-G-FDGEGIIDALCTQPFFDDCRNALSSDGIFVVNLWSRDK-RYDRYLERLESSFE 196 (262)
T ss_pred hCCCCCCEEEEe-C-CCCCCCccccCcHHHHHHHHHhcCCCcEEEEEcCCCch-hHHHHHHHHHHhcC
Confidence 224689999974 2 2221 2368999999999999998875443433 24556666666563
No 143
>TIGR00438 rrmJ cell division protein FtsJ.
Probab=99.14 E-value=2.6e-09 Score=83.61 Aligned_cols=118 Identities=16% Similarity=0.144 Sum_probs=76.2
Q ss_pred CCCCCCeEEEeCCCccHHHHHHHHhC---CEEEEecchhhHHHHHHHHHHhhccccccCCCCCCCCCceEEEEeecCCCc
Q 027530 61 SKLKGKRVIELGAGCGVAGFGMALLG---CNVITTDQIEVLPLLKRNVEWNTSRISQMNPGSGNLLGSIQAVELDWGNED 137 (222)
Q Consensus 61 ~~~~~~~vLelGcG~G~~~i~la~~g---~~v~~~D~~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~v~~~~~d~~~~~ 137 (222)
...+|.+|||+|||+|.++..++... .+|+++|++++. .. .++.+...|+.+..
T Consensus 29 ~i~~g~~VLDiG~GtG~~~~~l~~~~~~~~~v~~vDis~~~----------~~-------------~~i~~~~~d~~~~~ 85 (188)
T TIGR00438 29 LIKPGDTVLDLGAAPGGWSQVAVEQVGGKGRVIAVDLQPMK----------PI-------------ENVDFIRGDFTDEE 85 (188)
T ss_pred ccCCCCEEEEecCCCCHHHHHHHHHhCCCceEEEEeccccc----------cC-------------CCceEEEeeCCChh
Confidence 34578899999999999998888653 369999995532 10 24566666665432
Q ss_pred cc-----cccCCCccEEEEecccc--C---cc------CHHHHHHHHHHhcCCCeEEEEEEEEcChhHHHHHHHHHhcCC
Q 027530 138 HI-----KAVAPPFDYIIGTDVVY--A---EH------LLEPLLQTIFALSGPKTTILLGYEIRSTSVHEQMLQMWKSNF 201 (222)
Q Consensus 138 ~~-----~~~~~~fD~Ii~~d~~y--~---~~------~~~~ll~~~~~~l~~~g~~~l~~~~r~~~~~~~f~~~~~~~~ 201 (222)
.. ....++||+|++..+.+ . .. ....++..+.++|+|||++++....... ...++..++..|
T Consensus 86 ~~~~l~~~~~~~~~D~V~~~~~~~~~g~~~~~~~~~~~~~~~~l~~~~~~LkpgG~lvi~~~~~~~--~~~~l~~l~~~~ 163 (188)
T TIGR00438 86 VLNKIRERVGDDKVDVVMSDAAPNISGYWDIDHLRSIDLVELALDIAKEVLKPKGNFVVKVFQGEE--IDEYLNELRKLF 163 (188)
T ss_pred HHHHHHHHhCCCCccEEEcCCCCCCCCCccccHHHHHHHHHHHHHHHHHHccCCCEEEEEEccCcc--HHHHHHHHHhhh
Confidence 11 12356799999864321 1 11 1367889999999999999986533222 345666655555
Q ss_pred eE
Q 027530 202 NV 203 (222)
Q Consensus 202 ~v 203 (222)
.-
T Consensus 164 ~~ 165 (188)
T TIGR00438 164 EK 165 (188)
T ss_pred ce
Confidence 43
No 144
>COG0742 N6-adenine-specific methylase [DNA replication, recombination, and repair]
Probab=99.14 E-value=4.1e-10 Score=86.93 Aligned_cols=111 Identities=23% Similarity=0.326 Sum_probs=79.0
Q ss_pred CCCCCeEEEeCCCccHHHHHHHHhCC-EEEEecc-hhhHHHHHHHHHHhhccccccCCCCCCCCCceEEEEeecCCCccc
Q 027530 62 KLKGKRVIELGAGCGVAGFGMALLGC-NVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSGNLLGSIQAVELDWGNEDHI 139 (222)
Q Consensus 62 ~~~~~~vLelGcG~G~~~i~la~~g~-~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~ 139 (222)
.++|.+||||-+|+|.+|+.++..|+ +++++|. .+++..+++|++.-+.. .++.+...|.......
T Consensus 41 ~i~g~~~LDlFAGSGaLGlEAlSRGA~~~~~vE~~~~a~~~l~~N~~~l~~~------------~~~~~~~~da~~~L~~ 108 (187)
T COG0742 41 EIEGARVLDLFAGSGALGLEALSRGAARVVFVEKDRKAVKILKENLKALGLE------------GEARVLRNDALRALKQ 108 (187)
T ss_pred ccCCCEEEEecCCccHhHHHHHhCCCceEEEEecCHHHHHHHHHHHHHhCCc------------cceEEEeecHHHHHHh
Confidence 47999999999999999999999998 5999999 56999999999876532 4566666444311111
Q ss_pred cccCCCccEEEEeccccCccCHHHHHHHHH----HhcCCCeEEEEEEEEc
Q 027530 140 KAVAPPFDYIIGTDVVYAEHLLEPLLQTIF----ALSGPKTTILLGYEIR 185 (222)
Q Consensus 140 ~~~~~~fD~Ii~~d~~y~~~~~~~ll~~~~----~~l~~~g~~~l~~~~r 185 (222)
....++||+|+.-++ |.....+.....+. .+|+|++.+++-+...
T Consensus 109 ~~~~~~FDlVflDPP-y~~~l~~~~~~~~~~~~~~~L~~~~~iv~E~~~~ 157 (187)
T COG0742 109 LGTREPFDLVFLDPP-YAKGLLDKELALLLLEENGWLKPGALIVVEHDKD 157 (187)
T ss_pred cCCCCcccEEEeCCC-CccchhhHHHHHHHHHhcCCcCCCcEEEEEeCCC
Confidence 111235999997655 55565544333333 4699999988876544
No 145
>KOG1541 consensus Predicted protein carboxyl methylase [General function prediction only]
Probab=99.14 E-value=6.7e-10 Score=87.02 Aligned_cols=118 Identities=19% Similarity=0.275 Sum_probs=87.7
Q ss_pred CCCeEEEeCCCccHHHHHHHHhCCEEEEecc-hhhHHHHHHHHHHhhccccccCCCCCCCCCceEEEEeecCCCcccccc
Q 027530 64 KGKRVIELGAGCGVAGFGMALLGCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSGNLLGSIQAVELDWGNEDHIKAV 142 (222)
Q Consensus 64 ~~~~vLelGcG~G~~~i~la~~g~~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~ 142 (222)
...-|||||||+|+.|-.+...|...+++|+ +.|++.+.+. +..+ .+...|.+ ..+++.
T Consensus 50 ~~~~iLDIGCGsGLSg~vL~~~Gh~wiGvDiSpsML~~a~~~-e~eg-----------------dlil~DMG--~Glpfr 109 (270)
T KOG1541|consen 50 KSGLILDIGCGSGLSGSVLSDSGHQWIGVDISPSMLEQAVER-ELEG-----------------DLILCDMG--EGLPFR 109 (270)
T ss_pred CCcEEEEeccCCCcchheeccCCceEEeecCCHHHHHHHHHh-hhhc-----------------CeeeeecC--CCCCCC
Confidence 4567999999999999999999988999999 6799999862 2112 44566667 445666
Q ss_pred CCCccEEEEeccccCc-------cC----HHHHHHHHHHhcCCCeEEEEEEEEcChhHHHHHHHHH-hcCC
Q 027530 143 APPFDYIIGTDVVYAE-------HL----LEPLLQTIFALSGPKTTILLGYEIRSTSVHEQMLQMW-KSNF 201 (222)
Q Consensus 143 ~~~fD~Ii~~d~~y~~-------~~----~~~ll~~~~~~l~~~g~~~l~~~~r~~~~~~~f~~~~-~~~~ 201 (222)
++.||-+|+-..+.+. +. +..|+.++..+|++++++++.+.+.+....+.+.+.. +.+|
T Consensus 110 pGtFDg~ISISAvQWLcnA~~s~~~P~~Rl~~FF~tLy~~l~rg~raV~QfYpen~~q~d~i~~~a~~aGF 180 (270)
T KOG1541|consen 110 PGTFDGVISISAVQWLCNADKSLHVPKKRLLRFFGTLYSCLKRGARAVLQFYPENEAQIDMIMQQAMKAGF 180 (270)
T ss_pred CCccceEEEeeeeeeecccCccccChHHHHHHHhhhhhhhhccCceeEEEecccchHHHHHHHHHHHhhcc
Confidence 8999998876555431 11 3457888999999999999998887776555554443 4565
No 146
>COG4106 Tam Trans-aconitate methyltransferase [General function prediction only]
Probab=99.13 E-value=1.8e-10 Score=89.96 Aligned_cols=98 Identities=17% Similarity=0.171 Sum_probs=79.6
Q ss_pred CCCeEEEeCCCccHHHHHHHHh--CCEEEEecc-hhhHHHHHHHHHHhhccccccCCCCCCCCCceEEEEeecCCCcccc
Q 027530 64 KGKRVIELGAGCGVAGFGMALL--GCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSGNLLGSIQAVELDWGNEDHIK 140 (222)
Q Consensus 64 ~~~~vLelGcG~G~~~i~la~~--g~~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~ 140 (222)
.-.+|.|||||+|..+-.+++. ++.++|+|. ++|++.|+... .++++...|..+..
T Consensus 30 ~~~~v~DLGCGpGnsTelL~~RwP~A~i~GiDsS~~Mla~Aa~rl------------------p~~~f~~aDl~~w~--- 88 (257)
T COG4106 30 RPRRVVDLGCGPGNSTELLARRWPDAVITGIDSSPAMLAKAAQRL------------------PDATFEEADLRTWK--- 88 (257)
T ss_pred ccceeeecCCCCCHHHHHHHHhCCCCeEeeccCCHHHHHHHHHhC------------------CCCceecccHhhcC---
Confidence 3458999999999999998887 678999998 67998885532 35667665544332
Q ss_pred ccCCCccEEEEeccccCccCHHHHHHHHHHhcCCCeEEEEEEE
Q 027530 141 AVAPPFDYIIGTDVVYAEHLLEPLLQTIFALSGPKTTILLGYE 183 (222)
Q Consensus 141 ~~~~~fD~Ii~~d~~y~~~~~~~ll~~~~~~l~~~g~~~l~~~ 183 (222)
+..++|+|++|-++.+..++..++..+-..|.|||.+-+..+
T Consensus 89 -p~~~~dllfaNAvlqWlpdH~~ll~rL~~~L~Pgg~LAVQmP 130 (257)
T COG4106 89 -PEQPTDLLFANAVLQWLPDHPELLPRLVSQLAPGGVLAVQMP 130 (257)
T ss_pred -CCCccchhhhhhhhhhccccHHHHHHHHHhhCCCceEEEECC
Confidence 357899999999999999999999999999999998777654
No 147
>PRK14904 16S rRNA methyltransferase B; Provisional
Probab=99.13 E-value=1.5e-09 Score=95.85 Aligned_cols=132 Identities=19% Similarity=0.105 Sum_probs=89.2
Q ss_pred cccchHHHHHHHHhhhccCCCCCCCCCCCCeEEEeCCCccHHHHHHHHh---CCEEEEecc-hhhHHHHHHHHHHhhccc
Q 027530 37 TVWDASVVFVKYLEKNCRKGRFCPSKLKGKRVIELGAGCGVAGFGMALL---GCNVITTDQ-IEVLPLLKRNVEWNTSRI 112 (222)
Q Consensus 37 ~~W~~~~~la~~l~~~~~~~~~~~~~~~~~~vLelGcG~G~~~i~la~~---g~~v~~~D~-~~~l~~~~~n~~~n~~~~ 112 (222)
.+++.+..++-.+. ...+|.+|||+|||+|..++.++.. +.+|+++|. +++++.+++|++++++
T Consensus 233 ~vqd~~s~l~~~~l----------~~~~g~~VLDlgaG~G~kt~~la~~~~~~~~V~avD~s~~~l~~~~~~~~~~g~-- 300 (445)
T PRK14904 233 SVQNPTQALACLLL----------NPQPGSTVLDLCAAPGGKSTFMAELMQNRGQITAVDRYPQKLEKIRSHASALGI-- 300 (445)
T ss_pred EEeCHHHHHHHHhc----------CCCCCCEEEEECCCCCHHHHHHHHHhCCCcEEEEEECCHHHHHHHHHHHHHhCC--
Confidence 46654444444443 2346789999999999998887764 358999999 6699999999998774
Q ss_pred cccCCCCCCCCCceEEEEeecCCCccccccCCCccEEEEeccc------cCc---------c-------CHHHHHHHHHH
Q 027530 113 SQMNPGSGNLLGSIQAVELDWGNEDHIKAVAPPFDYIIGTDVV------YAE---------H-------LLEPLLQTIFA 170 (222)
Q Consensus 113 ~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~fD~Ii~~d~~------y~~---------~-------~~~~ll~~~~~ 170 (222)
.++++...|..+.. ...+||.|+...+- ... . ....++..+.+
T Consensus 301 -----------~~v~~~~~Da~~~~----~~~~fD~Vl~D~Pcsg~g~~~r~p~~~~~~~~~~~~~l~~~q~~iL~~a~~ 365 (445)
T PRK14904 301 -----------TIIETIEGDARSFS----PEEQPDAILLDAPCTGTGVLGRRAELRWKLTPEKLAELVGLQAELLDHAAS 365 (445)
T ss_pred -----------CeEEEEeCcccccc----cCCCCCEEEEcCCCCCcchhhcCcchhhcCCHHHHHHHHHHHHHHHHHHHH
Confidence 25777776654332 24679999863221 100 0 12357888899
Q ss_pred hcCCCeEEEEEEEEc----ChhHHHHHHH
Q 027530 171 LSGPKTTILLGYEIR----STSVHEQMLQ 195 (222)
Q Consensus 171 ~l~~~g~~~l~~~~r----~~~~~~~f~~ 195 (222)
+|+|||++++++-.- +..+...|++
T Consensus 366 ~lkpgG~lvystcs~~~~Ene~~v~~~l~ 394 (445)
T PRK14904 366 LLKPGGVLVYATCSIEPEENELQIEAFLQ 394 (445)
T ss_pred hcCCCcEEEEEeCCCChhhHHHHHHHHHH
Confidence 999999998876332 2233455665
No 148
>TIGR00563 rsmB ribosomal RNA small subunit methyltransferase RsmB. The seed alignment is built from bacterial sequences only. Eukaryotic homologs include Nop2, a protein required for processing pre-rRNA, that is likely also a rRNA methyltransferase, although the fine specificity may differ. Cutoff scores are set to avoid treating archaeal and eukaroytic homologs automatically as functionally equivalent, although they may have very similar roles.
Probab=99.10 E-value=2.1e-09 Score=94.43 Aligned_cols=133 Identities=14% Similarity=0.084 Sum_probs=87.5
Q ss_pred chHHHHHHHHhhhccCCCCCCCCCCCCeEEEeCCCccHHHHHHHHh-C-CEEEEecc-hhhHHHHHHHHHHhhccccccC
Q 027530 40 DASVVFVKYLEKNCRKGRFCPSKLKGKRVIELGAGCGVAGFGMALL-G-CNVITTDQ-IEVLPLLKRNVEWNTSRISQMN 116 (222)
Q Consensus 40 ~~~~~la~~l~~~~~~~~~~~~~~~~~~vLelGcG~G~~~i~la~~-g-~~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~ 116 (222)
.++..++.++. ..+|.+|||+|||+|..++.+++. + ++|+++|. +++++.+++|+++++..
T Consensus 225 ~~s~~~~~~L~-----------~~~g~~VLDlcag~G~kt~~la~~~~~~~v~a~D~~~~~l~~~~~n~~r~g~~----- 288 (426)
T TIGR00563 225 ASAQWVATWLA-----------PQNEETILDACAAPGGKTTHILELAPQAQVVALDIHEHRLKRVYENLKRLGLT----- 288 (426)
T ss_pred HHHHHHHHHhC-----------CCCCCeEEEeCCCccHHHHHHHHHcCCCeEEEEeCCHHHHHHHHHHHHHcCCC-----
Confidence 45666666663 236789999999999999988875 3 58999999 66999999999987742
Q ss_pred CCCCCCCCceEEEEeecCCCccccccCCCccEEEEecc------ccCccC----------------HHHHHHHHHHhcCC
Q 027530 117 PGSGNLLGSIQAVELDWGNEDHIKAVAPPFDYIIGTDV------VYAEHL----------------LEPLLQTIFALSGP 174 (222)
Q Consensus 117 ~~~~~~~~~v~~~~~d~~~~~~~~~~~~~fD~Ii~~d~------~y~~~~----------------~~~ll~~~~~~l~~ 174 (222)
..+.+...|...... .....+||.|+...+ +...+. ...++..+.++|+|
T Consensus 289 -------~~v~~~~~d~~~~~~-~~~~~~fD~VllDaPcSg~G~~~~~p~~~~~~~~~~~~~l~~lQ~~lL~~a~~~Lkp 360 (426)
T TIGR00563 289 -------IKAETKDGDGRGPSQ-WAENEQFDRILLDAPCSATGVIRRHPDIKWLRKPRDIAELAELQSEILDAIWPLLKT 360 (426)
T ss_pred -------eEEEEeccccccccc-cccccccCEEEEcCCCCCCcccccCcchhhcCCHHHHHHHHHHHHHHHHHHHHhcCC
Confidence 123334333221110 012467999986432 222111 35688889999999
Q ss_pred CeEEEEEEEE----cChhHHHHHHHH
Q 027530 175 KTTILLGYEI----RSTSVHEQMLQM 196 (222)
Q Consensus 175 ~g~~~l~~~~----r~~~~~~~f~~~ 196 (222)
||.+++++-. -+......|++.
T Consensus 361 gG~lvystcs~~~~Ene~~v~~~l~~ 386 (426)
T TIGR00563 361 GGTLVYATCSVLPEENSEQIKAFLQE 386 (426)
T ss_pred CcEEEEEeCCCChhhCHHHHHHHHHh
Confidence 9999876432 233445566654
No 149
>PF05958 tRNA_U5-meth_tr: tRNA (Uracil-5-)-methyltransferase; InterPro: IPR010280 This family consists of (uracil-5-)-methyltransferases 2.1.1.35 from EC from bacteria, archaea and eukaryotes. A 5-methyluridine (m(5)U) residue at position 54 is a conserved feature of bacterial and eukaryotic tRNAs. The methylation of U54 is catalysed by the tRNA(m5U54)methyltransferase, which in Saccharomyces cerevisiae is encoded by the nonessential TRM2 gene. It is thought that tRNA modification enzymes might have a role in tRNA maturation not necessarily linked to their known catalytic activity []. This protein family also contains the 23SrRNA methyltransferases, first proposed to be RNA methyltransferases by homology to the TrmA family. The member from Escherichia coli has now been shown to act as the 23S RNA methyltransferase for the conserved U1939. The gene is now designated rumA and was previously designated ygcA [].; GO: 0008173 RNA methyltransferase activity, 0006396 RNA processing; PDB: 2VS1_A 2JJQ_A 2BH2_A 1UWV_A 3BT7_B.
Probab=99.09 E-value=2.9e-09 Score=91.23 Aligned_cols=163 Identities=16% Similarity=0.157 Sum_probs=100.1
Q ss_pred EcCeEEEEeeCCCCccccccccchHHHHHHHHhhhccCCCCCCCCCCCCeEEEeCCCccHHHHHHHHhCCEEEEecc-hh
Q 027530 18 VLGHQLQFSQDPNSKHLGTTVWDASVVFVKYLEKNCRKGRFCPSKLKGKRVIELGAGCGVAGFGMALLGCNVITTDQ-IE 96 (222)
Q Consensus 18 ~~~~~~~i~q~~~~~~~g~~~W~~~~~la~~l~~~~~~~~~~~~~~~~~~vLelGcG~G~~~i~la~~g~~v~~~D~-~~ 96 (222)
+.+..+++...|+++.- .-+.....|.+++.+.+ ...++ +||||-||+|..|+.+|..+.+|+|+|. ++
T Consensus 160 ~~~~~~~~~~~~~sFfQ--vN~~~~~~l~~~~~~~l-------~~~~~-~vlDlycG~G~fsl~la~~~~~V~gvE~~~~ 229 (352)
T PF05958_consen 160 IQDKGLSFRISPGSFFQ--VNPEQNEKLYEQALEWL-------DLSKG-DVLDLYCGVGTFSLPLAKKAKKVIGVEIVEE 229 (352)
T ss_dssp ECCCTEEEEEETTS-----SBHHHHHHHHHHHHHHC-------TT-TT-EEEEES-TTTCCHHHHHCCSSEEEEEES-HH
T ss_pred eeccceEEEECCCcCcc--CcHHHHHHHHHHHHHHh-------hcCCC-cEEEEeecCCHHHHHHHhhCCeEEEeeCCHH
Confidence 34445666666654332 23345667777776653 22233 7999999999999999999999999998 67
Q ss_pred hHHHHHHHHHHhhccccccCCCCCCCCCceEEEEeecCCCcc----------c---cccCCCccEEEEeccccCccCHHH
Q 027530 97 VLPLLKRNVEWNTSRISQMNPGSGNLLGSIQAVELDWGNEDH----------I---KAVAPPFDYIIGTDVVYAEHLLEP 163 (222)
Q Consensus 97 ~l~~~~~n~~~n~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~----------~---~~~~~~fD~Ii~~d~~y~~~~~~~ 163 (222)
+++.|++|++.|++. ++++..++..+... . ......+|+||..+|- ...-+.
T Consensus 230 av~~A~~Na~~N~i~-------------n~~f~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~d~vilDPPR--~G~~~~ 294 (352)
T PF05958_consen 230 AVEDARENAKLNGID-------------NVEFIRGDAEDFAKALAKAREFNRLKGIDLKSFKFDAVILDPPR--AGLDEK 294 (352)
T ss_dssp HHHHHHHHHHHTT---------------SEEEEE--SHHCCCHHCCS-GGTTGGGS-GGCTTESEEEE---T--T-SCHH
T ss_pred HHHHHHHHHHHcCCC-------------cceEEEeeccchhHHHHhhHHHHhhhhhhhhhcCCCEEEEcCCC--CCchHH
Confidence 999999999999863 78888755433211 0 0113468999988775 444556
Q ss_pred HHHHHHHhcCCCeEEEEEEEEcChhHHHHHHHHHhcCCeEEEecCCCC
Q 027530 164 LLQTIFALSGPKTTILLGYEIRSTSVHEQMLQMWKSNFNVKLVPKAKE 211 (222)
Q Consensus 164 ll~~~~~~l~~~g~~~l~~~~r~~~~~~~f~~~~~~~~~v~~v~~~~~ 211 (222)
+++.+.+ +.-++|+++.+.... +.. ..+.++|.++.+.--++
T Consensus 295 ~~~~~~~---~~~ivYvSCnP~tla--RDl-~~L~~~y~~~~v~~~Dm 336 (352)
T PF05958_consen 295 VIELIKK---LKRIVYVSCNPATLA--RDL-KILKEGYKLEKVQPVDM 336 (352)
T ss_dssp HHHHHHH---SSEEEEEES-HHHHH--HHH-HHHHCCEEEEEEEEE-S
T ss_pred HHHHHhc---CCeEEEEECCHHHHH--HHH-HHHhhcCEEEEEEEeec
Confidence 6666654 357899998764432 222 33445888876554333
No 150
>PRK13256 thiopurine S-methyltransferase; Reviewed
Probab=99.07 E-value=7.8e-09 Score=82.87 Aligned_cols=158 Identities=16% Similarity=0.114 Sum_probs=101.4
Q ss_pred hHHHHHHHHhhhccCCCCCCCCCCCCeEEEeCCCccHHHHHHHHhCCEEEEecchh-hHHHHHHHHHHhhccc--cccCC
Q 027530 41 ASVVFVKYLEKNCRKGRFCPSKLKGKRVIELGAGCGVAGFGMALLGCNVITTDQIE-VLPLLKRNVEWNTSRI--SQMNP 117 (222)
Q Consensus 41 ~~~~la~~l~~~~~~~~~~~~~~~~~~vLelGcG~G~~~i~la~~g~~v~~~D~~~-~l~~~~~n~~~n~~~~--~~~~~ 117 (222)
....|.+|+..- ...++.+||..|||.|.-.+.||.+|.+|+++|+++ +++.+.+ .|++.. .+...
T Consensus 28 pnp~L~~~~~~l--------~~~~~~rvLvPgCGkg~D~~~LA~~G~~V~GvDlS~~Ai~~~~~---e~~~~~~~~~~~~ 96 (226)
T PRK13256 28 PNEFLVKHFSKL--------NINDSSVCLIPMCGCSIDMLFFLSKGVKVIGIELSEKAVLSFFS---QNTINYEVIHGND 96 (226)
T ss_pred CCHHHHHHHHhc--------CCCCCCeEEEeCCCChHHHHHHHhCCCcEEEEecCHHHHHHHHH---HcCCCcceecccc
Confidence 467888887543 122567999999999999999999999999999954 8887744 222110 00000
Q ss_pred CCCCCCCceEEEEeecCCCccccccCCCccEEEEecccc--CccCHHHHHHHHHHhcCCCeEEEEEEEEcCh--------
Q 027530 118 GSGNLLGSIQAVELDWGNEDHIKAVAPPFDYIIGTDVVY--AEHLLEPLLQTIFALSGPKTTILLGYEIRST-------- 187 (222)
Q Consensus 118 ~~~~~~~~v~~~~~d~~~~~~~~~~~~~fD~Ii~~d~~y--~~~~~~~ll~~~~~~l~~~g~~~l~~~~r~~-------- 187 (222)
........+++.+.|+-+........++||+|+=..++. ..+.....++.+.++|+|||.+++..-.-..
T Consensus 97 ~~~~~~~~i~~~~gD~f~l~~~~~~~~~fD~VyDra~~~Alpp~~R~~Y~~~l~~lL~pgg~llll~~~~~~~~~GPPf~ 176 (226)
T PRK13256 97 YKLYKGDDIEIYVADIFNLPKIANNLPVFDIWYDRGAYIALPNDLRTNYAKMMLEVCSNNTQILLLVMEHDKKSQTPPYS 176 (226)
T ss_pred cceeccCceEEEEccCcCCCccccccCCcCeeeeehhHhcCCHHHHHHHHHHHHHHhCCCcEEEEEEEecCCCCCCCCCc
Confidence 000123467888866654432112236899987554443 3566778999999999999988765432111
Q ss_pred hHHHHHHHHHhcCCeEEEecCC
Q 027530 188 SVHEQMLQMWKSNFNVKLVPKA 209 (222)
Q Consensus 188 ~~~~~f~~~~~~~~~v~~v~~~ 209 (222)
-..++..+.+...|.++.+...
T Consensus 177 v~~~e~~~lf~~~~~i~~l~~~ 198 (226)
T PRK13256 177 VTQAELIKNFSAKIKFELIDSK 198 (226)
T ss_pred CCHHHHHHhccCCceEEEeeec
Confidence 1234555666777888777653
No 151
>PLN02476 O-methyltransferase
Probab=99.05 E-value=5.4e-09 Score=86.18 Aligned_cols=129 Identities=12% Similarity=0.204 Sum_probs=91.2
Q ss_pred CCCeEEEeCCCccHHHHHHHHh---CCEEEEecc-hhhHHHHHHHHHHhhccccccCCCCCCCCCceEEEEeecCCCcc-
Q 027530 64 KGKRVIELGAGCGVAGFGMALL---GCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSGNLLGSIQAVELDWGNEDH- 138 (222)
Q Consensus 64 ~~~~vLelGcG~G~~~i~la~~---g~~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~- 138 (222)
+.++|||||+|+|..++.+|.. +.+|+.+|. ++..+.+++|++++++. .++++...+..+...
T Consensus 118 ~ak~VLEIGT~tGySal~lA~al~~~G~V~TiE~d~e~~~~Ar~n~~~aGl~------------~~I~li~GdA~e~L~~ 185 (278)
T PLN02476 118 GAERCIEVGVYTGYSSLAVALVLPESGCLVACERDSNSLEVAKRYYELAGVS------------HKVNVKHGLAAESLKS 185 (278)
T ss_pred CCCeEEEecCCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCC------------CcEEEEEcCHHHHHHH
Confidence 5689999999999999999874 457999999 67999999999998853 578888755543211
Q ss_pred c--cccCCCccEEEEeccccCccCHHHHHHHHHHhcCCCeEEEEEEEEcChh------------HHHHHHHHHhc--CCe
Q 027530 139 I--KAVAPPFDYIIGTDVVYAEHLLEPLLQTIFALSGPKTTILLGYEIRSTS------------VHEQMLQMWKS--NFN 202 (222)
Q Consensus 139 ~--~~~~~~fD~Ii~~d~~y~~~~~~~ll~~~~~~l~~~g~~~l~~~~r~~~------------~~~~f~~~~~~--~~~ 202 (222)
+ ....++||+|+.-.. ......++..+.++|+|||.+++-....... ...+|.+.+.. .+.
T Consensus 186 l~~~~~~~~FD~VFIDa~---K~~Y~~y~e~~l~lL~~GGvIV~DNvL~~G~V~d~~~~d~~t~~ir~fn~~v~~d~~~~ 262 (278)
T PLN02476 186 MIQNGEGSSYDFAFVDAD---KRMYQDYFELLLQLVRVGGVIVMDNVLWHGRVADPLVNDAKTISIRNFNKKLMDDKRVS 262 (278)
T ss_pred HHhcccCCCCCEEEECCC---HHHHHHHHHHHHHhcCCCcEEEEecCccCCcccCcccCCHHHHHHHHHHHHHhhCCCEE
Confidence 1 011368999986532 5667888999999999999977643222111 24667776643 455
Q ss_pred EEEec
Q 027530 203 VKLVP 207 (222)
Q Consensus 203 v~~v~ 207 (222)
...+|
T Consensus 263 ~~llP 267 (278)
T PLN02476 263 ISMVP 267 (278)
T ss_pred EEEEE
Confidence 55554
No 152
>PF07021 MetW: Methionine biosynthesis protein MetW; InterPro: IPR010743 This family consists of several bacterial and one archaeal methionine biosynthesis MetW proteins. Biosynthesis of methionine from homoserine in Pseudomonas putida takes place in three steps. The first step is the acylation of homoserine to yield an acyl-L-homoserine. This reaction is catalysed by the products of the metXW genes and is equivalent to the first step in enterobacteria, Gram-positive bacteria and fungi, except that in these microorganisms the reaction is catalysed by a single polypeptide (the product of the metA gene in Escherichia coli and the met5 gene product in Neurospora crassa). In P. putida, as in Gram-positive bacteria and certain fungi, the second and third steps are a direct sulphydrylation that converts the O-acyl-L-homoserine into homocysteine and further methylation to yield methionine. The latter reaction can be mediated by either of the two methionine synthetases present in the cells [].
Probab=99.05 E-value=9e-10 Score=85.20 Aligned_cols=96 Identities=15% Similarity=0.204 Sum_probs=68.8
Q ss_pred CCCeEEEeCCCccHHHHHHHH-hCCEEEEecch-hhHHHHHHHHHHhhccccccCCCCCCCCCceEEEEeecCCCccccc
Q 027530 64 KGKRVIELGAGCGVAGFGMAL-LGCNVITTDQI-EVLPLLKRNVEWNTSRISQMNPGSGNLLGSIQAVELDWGNEDHIKA 141 (222)
Q Consensus 64 ~~~~vLelGcG~G~~~i~la~-~g~~v~~~D~~-~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~ 141 (222)
+|.+|||||||.|.+-..|.. ++.+..|+|++ +.+..+.+ + -+.+++.|..+.- ..+
T Consensus 13 pgsrVLDLGCGdG~LL~~L~~~k~v~g~GvEid~~~v~~cv~----r----------------Gv~Viq~Dld~gL-~~f 71 (193)
T PF07021_consen 13 PGSRVLDLGCGDGELLAYLKDEKQVDGYGVEIDPDNVAACVA----R----------------GVSVIQGDLDEGL-ADF 71 (193)
T ss_pred CCCEEEecCCCchHHHHHHHHhcCCeEEEEecCHHHHHHHHH----c----------------CCCEEECCHHHhH-hhC
Confidence 568999999999987766665 67789999984 44333322 2 3467887766432 235
Q ss_pred cCCCccEEEEeccccCccCHHHHHHHHHHhcCCCeEEEEEEE
Q 027530 142 VAPPFDYIIGTDVVYAEHLLEPLLQTIFALSGPKTTILLGYE 183 (222)
Q Consensus 142 ~~~~fD~Ii~~d~~y~~~~~~~ll~~~~~~l~~~g~~~l~~~ 183 (222)
++++||+||.+.++........+++.+.++ |..++++.+
T Consensus 72 ~d~sFD~VIlsqtLQ~~~~P~~vL~EmlRV---gr~~IVsFP 110 (193)
T PF07021_consen 72 PDQSFDYVILSQTLQAVRRPDEVLEEMLRV---GRRAIVSFP 110 (193)
T ss_pred CCCCccEEehHhHHHhHhHHHHHHHHHHHh---cCeEEEEec
Confidence 688999999999998877777787777655 556666654
No 153
>PF01596 Methyltransf_3: O-methyltransferase; InterPro: IPR002935 Members of this family are O-methyltransferases. The family includes also bacterial O-methyltransferases that may be involved in antibiotic production [].; GO: 0008171 O-methyltransferase activity; PDB: 1SUI_C 1SUS_D 3CBG_A 2GPY_B 3TR6_A 2AVD_A 3DUL_B 3DUW_B 2ZTH_A 1VID_A ....
Probab=99.03 E-value=1.6e-09 Score=85.78 Aligned_cols=129 Identities=16% Similarity=0.192 Sum_probs=90.8
Q ss_pred CCCeEEEeCCCccHHHHHHHHh---CCEEEEecc-hhhHHHHHHHHHHhhccccccCCCCCCCCCceEEEEeecCCCcc-
Q 027530 64 KGKRVIELGAGCGVAGFGMALL---GCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSGNLLGSIQAVELDWGNEDH- 138 (222)
Q Consensus 64 ~~~~vLelGcG~G~~~i~la~~---g~~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~- 138 (222)
+-++||||||++|..++.+|+. +++|+.+|. ++..+.+++|++..+.. .+|++...+..+...
T Consensus 45 ~~k~vLEIGt~~GySal~la~~l~~~g~i~tiE~~~~~~~~A~~~~~~ag~~------------~~I~~~~gda~~~l~~ 112 (205)
T PF01596_consen 45 RPKRVLEIGTFTGYSALWLAEALPEDGKITTIEIDPERAEIARENFRKAGLD------------DRIEVIEGDALEVLPE 112 (205)
T ss_dssp T-SEEEEESTTTSHHHHHHHHTSTTTSEEEEEESSHHHHHHHHHHHHHTTGG------------GGEEEEES-HHHHHHH
T ss_pred CCceEEEeccccccHHHHHHHhhcccceEEEecCcHHHHHHHHHHHHhcCCC------------CcEEEEEeccHhhHHH
Confidence 4479999999999999999964 578999999 67999999999998853 588998866543211
Q ss_pred ccc--cCCCccEEEEeccccCccCHHHHHHHHHHhcCCCeEEEEEEEEcCh----------h--HHHHHHHHHhc--CCe
Q 027530 139 IKA--VAPPFDYIIGTDVVYAEHLLEPLLQTIFALSGPKTTILLGYEIRST----------S--VHEQMLQMWKS--NFN 202 (222)
Q Consensus 139 ~~~--~~~~fD~Ii~~d~~y~~~~~~~ll~~~~~~l~~~g~~~l~~~~r~~----------~--~~~~f~~~~~~--~~~ 202 (222)
+.. ..++||+|+.-. ........+..+.++|+|||.+++-...... . ....|.+.+.. .|+
T Consensus 113 l~~~~~~~~fD~VFiDa---~K~~y~~y~~~~~~ll~~ggvii~DN~l~~G~V~~~~~~~~~~~~ir~f~~~i~~d~~~~ 189 (205)
T PF01596_consen 113 LANDGEEGQFDFVFIDA---DKRNYLEYFEKALPLLRPGGVIIADNVLWRGSVADPDDEDPKTVAIREFNEYIANDPRFE 189 (205)
T ss_dssp HHHTTTTTSEEEEEEES---TGGGHHHHHHHHHHHEEEEEEEEEETTTGGGGGGSTTGGSHHHHHHHHHHHHHHH-TTEE
T ss_pred HHhccCCCceeEEEEcc---cccchhhHHHHHhhhccCCeEEEEccccccceecCccchhhhHHHHHHHHHHHHhCCCee
Confidence 111 135899999653 3567778888899999999987664322111 1 14567777653 455
Q ss_pred EEEec
Q 027530 203 VKLVP 207 (222)
Q Consensus 203 v~~v~ 207 (222)
...+|
T Consensus 190 ~~llp 194 (205)
T PF01596_consen 190 TVLLP 194 (205)
T ss_dssp EEEEC
T ss_pred EEEEE
Confidence 55544
No 154
>PRK04338 N(2),N(2)-dimethylguanosine tRNA methyltransferase; Provisional
Probab=99.03 E-value=1.4e-09 Score=93.87 Aligned_cols=98 Identities=18% Similarity=0.199 Sum_probs=74.6
Q ss_pred CCeEEEeCCCccHHHHHHHHh-CC-EEEEecc-hhhHHHHHHHHHHhhccccccCCCCCCCCCceEEEEeecCCCccccc
Q 027530 65 GKRVIELGAGCGVAGFGMALL-GC-NVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSGNLLGSIQAVELDWGNEDHIKA 141 (222)
Q Consensus 65 ~~~vLelGcG~G~~~i~la~~-g~-~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~ 141 (222)
+.+|||++||+|..|+.++.. ++ +|+++|. +++++.+++|++.|++. ++.+...|..... ..
T Consensus 58 ~~~vLDl~aGsG~~~l~~a~~~~~~~V~a~Din~~Av~~a~~N~~~N~~~-------------~~~v~~~Da~~~l--~~ 122 (382)
T PRK04338 58 RESVLDALSASGIRGIRYALETGVEKVTLNDINPDAVELIKKNLELNGLE-------------NEKVFNKDANALL--HE 122 (382)
T ss_pred CCEEEECCCcccHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHhCCC-------------ceEEEhhhHHHHH--hh
Confidence 468999999999999999875 43 7999999 67999999999999853 4556665543211 11
Q ss_pred cCCCccEEEEeccccCccCHHHHHHHHHHhcCCCeEEEEEE
Q 027530 142 VAPPFDYIIGTDVVYAEHLLEPLLQTIFALSGPKTTILLGY 182 (222)
Q Consensus 142 ~~~~fD~Ii~~d~~y~~~~~~~ll~~~~~~l~~~g~~~l~~ 182 (222)
.++||+|+..+ + ....+++....+.++++|.++++.
T Consensus 123 -~~~fD~V~lDP-~---Gs~~~~l~~al~~~~~~gilyvSA 158 (382)
T PRK04338 123 -ERKFDVVDIDP-F---GSPAPFLDSAIRSVKRGGLLCVTA 158 (382)
T ss_pred -cCCCCEEEECC-C---CCcHHHHHHHHHHhcCCCEEEEEe
Confidence 45799999854 2 445678888667789999999983
No 155
>PRK00811 spermidine synthase; Provisional
Probab=99.00 E-value=6.3e-09 Score=86.61 Aligned_cols=128 Identities=14% Similarity=0.030 Sum_probs=81.7
Q ss_pred CCCeEEEeCCCccHHHHHHHHh-C-CEEEEecc-hhhHHHHHHHHHHhhccccccCCCCCCCCCceEEEEeecCCCcccc
Q 027530 64 KGKRVIELGAGCGVAGFGMALL-G-CNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSGNLLGSIQAVELDWGNEDHIK 140 (222)
Q Consensus 64 ~~~~vLelGcG~G~~~i~la~~-g-~~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~ 140 (222)
+.++||+||||.|..+..+++. + .+|+++|+ +++++.+++++....... ....++++...|..... .
T Consensus 76 ~p~~VL~iG~G~G~~~~~~l~~~~~~~V~~VEid~~vv~~a~~~~~~~~~~~--------~~d~rv~v~~~Da~~~l--~ 145 (283)
T PRK00811 76 NPKRVLIIGGGDGGTLREVLKHPSVEKITLVEIDERVVEVCRKYLPEIAGGA--------YDDPRVELVIGDGIKFV--A 145 (283)
T ss_pred CCCEEEEEecCchHHHHHHHcCCCCCEEEEEeCCHHHHHHHHHHhHHhcccc--------ccCCceEEEECchHHHH--h
Confidence 4579999999999999888876 4 37999999 669999999876432100 01347788775543321 1
Q ss_pred ccCCCccEEEEe--ccccCcc--CHHHHHHHHHHhcCCCeEEEEEEEE--cChhHHHHHHHHHhcCC
Q 027530 141 AVAPPFDYIIGT--DVVYAEH--LLEPLLQTIFALSGPKTTILLGYEI--RSTSVHEQMLQMWKSNF 201 (222)
Q Consensus 141 ~~~~~fD~Ii~~--d~~y~~~--~~~~ll~~~~~~l~~~g~~~l~~~~--r~~~~~~~f~~~~~~~~ 201 (222)
...++||+|++. ++..... .-..+++.+++.|+|+|++++.... ..........+.+++-|
T Consensus 146 ~~~~~yDvIi~D~~dp~~~~~~l~t~ef~~~~~~~L~~gGvlv~~~~~~~~~~~~~~~i~~tl~~~F 212 (283)
T PRK00811 146 ETENSFDVIIVDSTDPVGPAEGLFTKEFYENCKRALKEDGIFVAQSGSPFYQADEIKDMHRKLKEVF 212 (283)
T ss_pred hCCCcccEEEECCCCCCCchhhhhHHHHHHHHHHhcCCCcEEEEeCCCcccCHHHHHHHHHHHHHHC
Confidence 235789999974 2221111 1256889999999999987764221 12223344444444444
No 156
>PF05185 PRMT5: PRMT5 arginine-N-methyltransferase; InterPro: IPR007857 The human homologue of Saccharomyces cerevisiae Skb1 (Shk1 kinase-binding protein 1) is a protein methyltransferase []. These proteins seem to play a role in Jak signalling.; GO: 0008168 methyltransferase activity, 0005737 cytoplasm; PDB: 2Y1W_C 2Y1X_D 2V7E_B 2V74_H 3R0Q_G 3B3F_B 3B3J_A 3B3G_A 3UA3_A 3UA4_B ....
Probab=98.97 E-value=6.1e-09 Score=91.60 Aligned_cols=100 Identities=18% Similarity=0.204 Sum_probs=72.5
Q ss_pred CCCeEEEeCCCccHHHHHHHHhC------CEEEEecc-hhhHHHHHHHHHHhhccccccCCCCCCCCCceEEEEeecCCC
Q 027530 64 KGKRVIELGAGCGVAGFGMALLG------CNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSGNLLGSIQAVELDWGNE 136 (222)
Q Consensus 64 ~~~~vLelGcG~G~~~i~la~~g------~~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~v~~~~~d~~~~ 136 (222)
+++.|||+|||+|.++..+++.+ .+|++++. +.++..+++.+..|+. .++|++++.|..+.
T Consensus 186 ~~~vVldVGAGrGpL~~~al~A~~~~~~a~~VyAVEkn~~A~~~l~~~v~~n~w------------~~~V~vi~~d~r~v 253 (448)
T PF05185_consen 186 KDKVVLDVGAGRGPLSMFALQAGARAGGAVKVYAVEKNPNAVVTLQKRVNANGW------------GDKVTVIHGDMREV 253 (448)
T ss_dssp TT-EEEEES-TTSHHHHHHHHTTHHHCCESEEEEEESSTHHHHHHHHHHHHTTT------------TTTEEEEES-TTTS
T ss_pred cceEEEEeCCCccHHHHHHHHHHHHhCCCeEEEEEcCCHhHHHHHHHHHHhcCC------------CCeEEEEeCcccCC
Confidence 57889999999999998888775 37999998 5577777777677774 46899999777766
Q ss_pred ccccccCCCccEEEEecc--ccCccCHHHHHHHHHHhcCCCeEEE
Q 027530 137 DHIKAVAPPFDYIIGTDV--VYAEHLLEPLLQTIFALSGPKTTIL 179 (222)
Q Consensus 137 ~~~~~~~~~fD~Ii~~d~--~y~~~~~~~ll~~~~~~l~~~g~~~ 179 (222)
.. +.++|+||+--+ +-..+.....+....+.|+|+|+++
T Consensus 254 ~l----pekvDIIVSElLGsfg~nEl~pE~Lda~~rfLkp~Gi~I 294 (448)
T PF05185_consen 254 EL----PEKVDIIVSELLGSFGDNELSPECLDAADRFLKPDGIMI 294 (448)
T ss_dssp CH----SS-EEEEEE---BTTBTTTSHHHHHHHGGGGEEEEEEEE
T ss_pred CC----CCceeEEEEeccCCccccccCHHHHHHHHhhcCCCCEEe
Confidence 43 459999997422 2234466778888999999998765
No 157
>PF02475 Met_10: Met-10+ like-protein; InterPro: IPR003402 This entry represents the Trm5 family. Trm5 specifically methylates the N1 position of guanosine-37 in various tRNAs [, , ]. Another members of this family, tRNA wybutosine-synthesizing protein 2 (Tyw2) and its homologues, are S-adenosyl-L-methionine-dependent transferases that act as a component of the wybutosine biosynthesis pathway [, ]. tRNA wybutosine-synthesizing protein 2 was originally thought to be a methyltransferase [].; GO: 0016740 transferase activity; PDB: 3A27_A 2ZZN_B 2YX1_A 2ZZM_A 3AY0_B 3K6R_A 3A26_A 3A25_A.
Probab=98.97 E-value=2.3e-09 Score=84.48 Aligned_cols=98 Identities=20% Similarity=0.161 Sum_probs=71.3
Q ss_pred CCCCCeEEEeCCCccHHHHHHHH--hCCEEEEecc-hhhHHHHHHHHHHhhccccccCCCCCCCCCceEEEEeecCCCcc
Q 027530 62 KLKGKRVIELGAGCGVAGFGMAL--LGCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSGNLLGSIQAVELDWGNEDH 138 (222)
Q Consensus 62 ~~~~~~vLelGcG~G~~~i~la~--~g~~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~ 138 (222)
..+|.+|+|+.||.|..++.+|+ .+..|++.|. +++++.+++|+++|++. ..+.+...|..+...
T Consensus 99 v~~~e~VlD~faGIG~f~l~~ak~~~~~~V~A~d~Np~a~~~L~~Ni~lNkv~------------~~i~~~~~D~~~~~~ 166 (200)
T PF02475_consen 99 VKPGEVVLDMFAGIGPFSLPIAKHGKAKRVYAVDLNPDAVEYLKENIRLNKVE------------NRIEVINGDAREFLP 166 (200)
T ss_dssp --TT-EEEETT-TTTTTHHHHHHHT-SSEEEEEES-HHHHHHHHHHHHHTT-T------------TTEEEEES-GGG---
T ss_pred CCcceEEEEccCCccHHHHHHhhhcCccEEEEecCCHHHHHHHHHHHHHcCCC------------CeEEEEcCCHHHhcC
Confidence 34678999999999999999998 5668999999 78999999999999864 578888877654322
Q ss_pred ccccCCCccEEEEeccccCccCHHHHHHHHHHhcCCCeEEE
Q 027530 139 IKAVAPPFDYIIGTDVVYAEHLLEPLLQTIFALSGPKTTIL 179 (222)
Q Consensus 139 ~~~~~~~fD~Ii~~d~~y~~~~~~~ll~~~~~~l~~~g~~~ 179 (222)
...||.|+++.+- ....++..+..+++++|.+.
T Consensus 167 ----~~~~drvim~lp~----~~~~fl~~~~~~~~~~g~ih 199 (200)
T PF02475_consen 167 ----EGKFDRVIMNLPE----SSLEFLDAALSLLKEGGIIH 199 (200)
T ss_dssp ----TT-EEEEEE--TS----SGGGGHHHHHHHEEEEEEEE
T ss_pred ----ccccCEEEECChH----HHHHHHHHHHHHhcCCcEEE
Confidence 6789999987654 33468888888899888653
No 158
>COG4122 Predicted O-methyltransferase [General function prediction only]
Probab=98.97 E-value=7.5e-09 Score=82.29 Aligned_cols=128 Identities=17% Similarity=0.182 Sum_probs=92.4
Q ss_pred CCCeEEEeCCCccHHHHHHHHh---CCEEEEecc-hhhHHHHHHHHHHhhccccccCCCCCCCCCceEEEE-eecCCCcc
Q 027530 64 KGKRVIELGAGCGVAGFGMALL---GCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSGNLLGSIQAVE-LDWGNEDH 138 (222)
Q Consensus 64 ~~~~vLelGcG~G~~~i~la~~---g~~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~v~~~~-~d~~~~~~ 138 (222)
..++|||||++.|.-++.+|.. ..++|.+|. ++..+.|++|+++.++. +++.... +|+.+...
T Consensus 59 ~~k~iLEiGT~~GySal~mA~~l~~~g~l~tiE~~~e~~~~A~~n~~~ag~~------------~~i~~~~~gdal~~l~ 126 (219)
T COG4122 59 GPKRILEIGTAIGYSALWMALALPDDGRLTTIERDEERAEIARENLAEAGVD------------DRIELLLGGDALDVLS 126 (219)
T ss_pred CCceEEEeecccCHHHHHHHhhCCCCCeEEEEeCCHHHHHHHHHHHHHcCCc------------ceEEEEecCcHHHHHH
Confidence 5689999999999999988864 247999999 67999999999998864 4566666 46554322
Q ss_pred ccccCCCccEEEEeccccCccCHHHHHHHHHHhcCCCeEEEEEEEEcCh----h--------H--HHHHHHHHhc--CCe
Q 027530 139 IKAVAPPFDYIIGTDVVYAEHLLEPLLQTIFALSGPKTTILLGYEIRST----S--------V--HEQMLQMWKS--NFN 202 (222)
Q Consensus 139 ~~~~~~~fD~Ii~~d~~y~~~~~~~ll~~~~~~l~~~g~~~l~~~~r~~----~--------~--~~~f~~~~~~--~~~ 202 (222)
. ...++||+|+.- ......+.++..+.++|+|||.+++-.-.... . . ...|.....+ +++
T Consensus 127 ~-~~~~~fDliFID---adK~~yp~~le~~~~lLr~GGliv~DNvl~~G~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 202 (219)
T COG4122 127 R-LLDGSFDLVFID---ADKADYPEYLERALPLLRPGGLIVADNVLFGGRVADPSIRDARTQVRGVRDFNDYLLEDPRYD 202 (219)
T ss_pred h-ccCCCccEEEEe---CChhhCHHHHHHHHHHhCCCcEEEEeecccCCccCCccchhHHHHHHHHHHHHHHHhhCcCce
Confidence 1 346899999854 23567788999999999999998764432221 0 1 3556666643 566
Q ss_pred EEEec
Q 027530 203 VKLVP 207 (222)
Q Consensus 203 v~~v~ 207 (222)
...+|
T Consensus 203 t~~lP 207 (219)
T COG4122 203 TVLLP 207 (219)
T ss_pred eEEEe
Confidence 66666
No 159
>COG2519 GCD14 tRNA(1-methyladenosine) methyltransferase and related methyltransferases [Translation, ribosomal structure and biogenesis]
Probab=98.97 E-value=2e-08 Score=80.65 Aligned_cols=103 Identities=16% Similarity=0.053 Sum_probs=80.9
Q ss_pred CCCCCCeEEEeCCCccHHHHHHHHh-CC--EEEEecc-hhhHHHHHHHHHHhhccccccCCCCCCCCCceEEEEeecCCC
Q 027530 61 SKLKGKRVIELGAGCGVAGFGMALL-GC--NVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSGNLLGSIQAVELDWGNE 136 (222)
Q Consensus 61 ~~~~~~~vLelGcG~G~~~i~la~~-g~--~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~v~~~~~d~~~~ 136 (222)
...+|.+|||.|.|+|.++.++|.. |. +|+..|+ ++..+.|++|++.-++. ++++....|..+.
T Consensus 91 gi~pg~rVlEAGtGSG~lt~~La~~vg~~G~v~tyE~r~d~~k~A~~Nl~~~~l~------------d~v~~~~~Dv~~~ 158 (256)
T COG2519 91 GISPGSRVLEAGTGSGALTAYLARAVGPEGHVTTYEIREDFAKTARENLSEFGLG------------DRVTLKLGDVREG 158 (256)
T ss_pred CCCCCCEEEEcccCchHHHHHHHHhhCCCceEEEEEecHHHHHHHHHHHHHhccc------------cceEEEecccccc
Confidence 5678999999999999999999964 43 7999999 77999999999987643 3466666555443
Q ss_pred ccccccCCCccEEEEeccccCccCHHHHHHHHHHhcCCCeEEEEEEEE
Q 027530 137 DHIKAVAPPFDYIIGTDVVYAEHLLEPLLQTIFALSGPKTTILLGYEI 184 (222)
Q Consensus 137 ~~~~~~~~~fD~Ii~~d~~y~~~~~~~ll~~~~~~l~~~g~~~l~~~~ 184 (222)
.. ...||.|+.- .......+..++..|+|||.+.+-.+.
T Consensus 159 ~~----~~~vDav~LD-----mp~PW~~le~~~~~Lkpgg~~~~y~P~ 197 (256)
T COG2519 159 ID----EEDVDAVFLD-----LPDPWNVLEHVSDALKPGGVVVVYSPT 197 (256)
T ss_pred cc----ccccCEEEEc-----CCChHHHHHHHHHHhCCCcEEEEEcCC
Confidence 32 3489999864 456788999999999999987665543
No 160
>PRK04148 hypothetical protein; Provisional
Probab=98.96 E-value=6.1e-09 Score=76.46 Aligned_cols=97 Identities=20% Similarity=0.201 Sum_probs=65.6
Q ss_pred HHHHHHhhhccCCCCCCCCCCCCeEEEeCCCccH-HHHHHHHhCCEEEEecc-hhhHHHHHHHHHHhhccccccCCCCCC
Q 027530 44 VFVKYLEKNCRKGRFCPSKLKGKRVIELGAGCGV-AGFGMALLGCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSGN 121 (222)
Q Consensus 44 ~la~~l~~~~~~~~~~~~~~~~~~vLelGcG~G~-~~i~la~~g~~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~ 121 (222)
.+++|+.++. ...++++|||+|||+|. ++..+++.|.+|+++|. +++++.++++ +
T Consensus 3 ~i~~~l~~~~-------~~~~~~kileIG~GfG~~vA~~L~~~G~~ViaIDi~~~aV~~a~~~----~------------ 59 (134)
T PRK04148 3 TIAEFIAENY-------EKGKNKKIVELGIGFYFKVAKKLKESGFDVIVIDINEKAVEKAKKL----G------------ 59 (134)
T ss_pred HHHHHHHHhc-------ccccCCEEEEEEecCCHHHHHHHHHCCCEEEEEECCHHHHHHHHHh----C------------
Confidence 4677877663 33466899999999997 99999999999999999 5576666554 2
Q ss_pred CCCceEEEEeecCCCccccccCCCccEEEEeccccCccCHHHHHHHHHHh
Q 027530 122 LLGSIQAVELDWGNEDHIKAVAPPFDYIIGTDVVYAEHLLEPLLQTIFAL 171 (222)
Q Consensus 122 ~~~~v~~~~~d~~~~~~~~~~~~~fD~Ii~~d~~y~~~~~~~ll~~~~~~ 171 (222)
+.+...|+.+... ..-..+|+|.+.-+- .+..+++++..+++
T Consensus 60 ----~~~v~dDlf~p~~--~~y~~a~liysirpp--~el~~~~~~la~~~ 101 (134)
T PRK04148 60 ----LNAFVDDLFNPNL--EIYKNAKLIYSIRPP--RDLQPFILELAKKI 101 (134)
T ss_pred ----CeEEECcCCCCCH--HHHhcCCEEEEeCCC--HHHHHHHHHHHHHc
Confidence 3556656554322 123578888887664 44444555544444
No 161
>PRK14896 ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein; Provisional
Probab=98.92 E-value=7.8e-09 Score=84.98 Aligned_cols=77 Identities=19% Similarity=0.246 Sum_probs=60.8
Q ss_pred CCCCCCeEEEeCCCccHHHHHHHHhCCEEEEecc-hhhHHHHHHHHHHhhccccccCCCCCCCCCceEEEEeecCCCccc
Q 027530 61 SKLKGKRVIELGAGCGVAGFGMALLGCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSGNLLGSIQAVELDWGNEDHI 139 (222)
Q Consensus 61 ~~~~~~~vLelGcG~G~~~i~la~~g~~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~ 139 (222)
...++.+|||+|||+|.++..+++.+.+|+++|+ +.+++.+++++... .++++...|..+..
T Consensus 26 ~~~~~~~VLEIG~G~G~lt~~L~~~~~~v~~vEid~~~~~~l~~~~~~~---------------~~v~ii~~D~~~~~-- 88 (258)
T PRK14896 26 EDTDGDPVLEIGPGKGALTDELAKRAKKVYAIELDPRLAEFLRDDEIAA---------------GNVEIIEGDALKVD-- 88 (258)
T ss_pred CCCCcCeEEEEeCccCHHHHHHHHhCCEEEEEECCHHHHHHHHHHhccC---------------CCEEEEEeccccCC--
Confidence 3446789999999999999999999889999999 55999998887531 36788887765432
Q ss_pred cccCCCccEEEEeccccC
Q 027530 140 KAVAPPFDYIIGTDVVYA 157 (222)
Q Consensus 140 ~~~~~~fD~Ii~~d~~y~ 157 (222)
-..||.|++|.+++.
T Consensus 89 ---~~~~d~Vv~NlPy~i 103 (258)
T PRK14896 89 ---LPEFNKVVSNLPYQI 103 (258)
T ss_pred ---chhceEEEEcCCccc
Confidence 235899999988654
No 162
>TIGR00478 tly hemolysin TlyA family protein. Hemolysins are exotoxins that attack blood cell membranes and cause cell rupture, often by forming a pore in the membrane. At least two members of this protein family have been characterized indirectly as pore-forming hemolysins, one from the spirochete Serpula (Treponema) hyodysenteriae and one from Mycobacterium tuberculosis. However, homology domains in this protein suggest methyltransferase activity (pfam01728) and RNA-binding activity (pfam01479).
Probab=98.92 E-value=3.8e-09 Score=84.88 Aligned_cols=112 Identities=18% Similarity=0.125 Sum_probs=73.0
Q ss_pred cccchHHHHHHHHhhhccCCCCCCCCCCCCeEEEeCCCccHHHHHHHHhCC-EEEEecc-hhhHHH-HHHHHHHhhcccc
Q 027530 37 TVWDASVVFVKYLEKNCRKGRFCPSKLKGKRVIELGAGCGVAGFGMALLGC-NVITTDQ-IEVLPL-LKRNVEWNTSRIS 113 (222)
Q Consensus 37 ~~W~~~~~la~~l~~~~~~~~~~~~~~~~~~vLelGcG~G~~~i~la~~g~-~v~~~D~-~~~l~~-~~~n~~~n~~~~~ 113 (222)
.++.++..|.+.+... ...++|++|||+|||+|.++..+++.|+ +|+++|. ++++.. ++++.+-..
T Consensus 55 ~vsr~~~kL~~~l~~~-------~~~~~~~~vlDiG~gtG~~t~~l~~~ga~~v~avD~~~~~l~~~l~~~~~v~~---- 123 (228)
T TIGR00478 55 FVSRGGEKLKEALEEF-------NIDVKNKIVLDVGSSTGGFTDCALQKGAKEVYGVDVGYNQLAEKLRQDERVKV---- 123 (228)
T ss_pred hhhhhHHHHHHHHHhc-------CCCCCCCEEEEcccCCCHHHHHHHHcCCCEEEEEeCCHHHHHHHHhcCCCeeE----
Confidence 5677888899888765 4467899999999999999999999987 6999998 445553 333221000
Q ss_pred ccCCCCCCCCCceEEEEeecCCCccccccCCCccEEEEeccccCccCHHHHHHHHHHhcCCCeEEEE
Q 027530 114 QMNPGSGNLLGSIQAVELDWGNEDHIKAVAPPFDYIIGTDVVYAEHLLEPLLQTIFALSGPKTTILL 180 (222)
Q Consensus 114 ~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~fD~Ii~~d~~y~~~~~~~ll~~~~~~l~~~g~~~l 180 (222)
.+...+...+|.+.. ..-..+|+++.+-. .++..+..+|+| |.+++
T Consensus 124 ---------~~~~ni~~~~~~~~~---~d~~~~DvsfiS~~--------~~l~~i~~~l~~-~~~~~ 169 (228)
T TIGR00478 124 ---------LERTNIRYVTPADIF---PDFATFDVSFISLI--------SILPELDLLLNP-NDLTL 169 (228)
T ss_pred ---------eecCCcccCCHhHcC---CCceeeeEEEeehH--------hHHHHHHHHhCc-CeEEE
Confidence 011122244555442 11236777776533 257788888888 65554
No 163
>TIGR02081 metW methionine biosynthesis protein MetW. This protein is found alongside MetX, of the enzyme that acylates homoserine as a first step toward methionine biosynthesis, in many species. It appears to act in methionine biosynthesis but is not fully characterized.
Probab=98.92 E-value=8.7e-09 Score=81.05 Aligned_cols=89 Identities=17% Similarity=0.167 Sum_probs=64.1
Q ss_pred CCCeEEEeCCCccHHHHHHHHh-CCEEEEecc-hhhHHHHHHHHHHhhccccccCCCCCCCCCceEEEEeecCCCccccc
Q 027530 64 KGKRVIELGAGCGVAGFGMALL-GCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSGNLLGSIQAVELDWGNEDHIKA 141 (222)
Q Consensus 64 ~~~~vLelGcG~G~~~i~la~~-g~~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~ 141 (222)
++++|||+|||+|..+..+++. +..++++|. +++++.+++ + ++++...+..+.. .+.
T Consensus 13 ~~~~iLDiGcG~G~~~~~l~~~~~~~~~giD~s~~~i~~a~~----~----------------~~~~~~~d~~~~l-~~~ 71 (194)
T TIGR02081 13 PGSRVLDLGCGDGELLALLRDEKQVRGYGIEIDQDGVLACVA----R----------------GVNVIQGDLDEGL-EAF 71 (194)
T ss_pred CCCEEEEeCCCCCHHHHHHHhccCCcEEEEeCCHHHHHHHHH----c----------------CCeEEEEEhhhcc-ccc
Confidence 4579999999999999888754 557999998 557776643 1 2345555543311 112
Q ss_pred cCCCccEEEEeccccCccCHHHHHHHHHHhcC
Q 027530 142 VAPPFDYIIGTDVVYAEHLLEPLLQTIFALSG 173 (222)
Q Consensus 142 ~~~~fD~Ii~~d~~y~~~~~~~ll~~~~~~l~ 173 (222)
.+++||+|+++.++++..+...+++.+.+.++
T Consensus 72 ~~~sfD~Vi~~~~l~~~~d~~~~l~e~~r~~~ 103 (194)
T TIGR02081 72 PDKSFDYVILSQTLQATRNPEEILDEMLRVGR 103 (194)
T ss_pred CCCCcCEEEEhhHhHcCcCHHHHHHHHHHhCC
Confidence 35789999999999988888888888777655
No 164
>PRK00274 ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein; Reviewed
Probab=98.91 E-value=6.9e-09 Score=85.91 Aligned_cols=77 Identities=16% Similarity=0.135 Sum_probs=59.2
Q ss_pred CCCCCeEEEeCCCccHHHHHHHHhCCEEEEecc-hhhHHHHHHHHHHhhccccccCCCCCCCCCceEEEEeecCCCcccc
Q 027530 62 KLKGKRVIELGAGCGVAGFGMALLGCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSGNLLGSIQAVELDWGNEDHIK 140 (222)
Q Consensus 62 ~~~~~~vLelGcG~G~~~i~la~~g~~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~ 140 (222)
..++.+|||+|||+|.++..+++.+.+|+++|. +++++.+++++.. .++++...|+.+...
T Consensus 40 ~~~~~~VLEiG~G~G~lt~~L~~~~~~v~avE~d~~~~~~~~~~~~~----------------~~v~~i~~D~~~~~~-- 101 (272)
T PRK00274 40 PQPGDNVLEIGPGLGALTEPLLERAAKVTAVEIDRDLAPILAETFAE----------------DNLTIIEGDALKVDL-- 101 (272)
T ss_pred CCCcCeEEEeCCCccHHHHHHHHhCCcEEEEECCHHHHHHHHHhhcc----------------CceEEEEChhhcCCH--
Confidence 346789999999999999999999889999999 5699999887641 367888877665421
Q ss_pred ccCCCccEEEEeccccC
Q 027530 141 AVAPPFDYIIGTDVVYA 157 (222)
Q Consensus 141 ~~~~~fD~Ii~~d~~y~ 157 (222)
.+..+|.|++|.+++.
T Consensus 102 -~~~~~~~vv~NlPY~i 117 (272)
T PRK00274 102 -SELQPLKVVANLPYNI 117 (272)
T ss_pred -HHcCcceEEEeCCccc
Confidence 1112689999988644
No 165
>PF00891 Methyltransf_2: O-methyltransferase; InterPro: IPR001077 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. This domain includes a range of O-methyltransferases some of which utilise S-adenosyl methionine as substrate []. In prokaryotes, the major role of DNA methylation is to protect host DNA against degradation by restriction enzymes. In eukaryotes, DNA methylation has been implicated in the control of several cellular processes, including differentiation, gene regulation, and embryonic development. O-methyltransferases have a common catalytic domain structure, which might be universal among S-adenosyl-L-methionine (AdoMet)-dependent methyltransferases []. Comparative analysis of the predicted amino acid sequences of a number of plant O-methyltransferase cDNA clones show that they share some 32-71% sequence identity, and can be grouped according to the different compounds they utilise as substrates [].; GO: 0008171 O-methyltransferase activity; PDB: 1FPQ_A 1FP1_D 3P9K_B 3P9I_D 3P9C_A 3I53_A 3I5U_A 3I64_A 3I58_A 1ZG3_A ....
Probab=98.91 E-value=1.9e-08 Score=81.79 Aligned_cols=96 Identities=19% Similarity=0.136 Sum_probs=75.9
Q ss_pred CCCeEEEeCCCccHHHHHHHHhC--CEEEEecchhhHHHHHHHHHHhhccccccCCCCCCCCCceEEEEeecCCCccccc
Q 027530 64 KGKRVIELGAGCGVAGFGMALLG--CNVITTDQIEVLPLLKRNVEWNTSRISQMNPGSGNLLGSIQAVELDWGNEDHIKA 141 (222)
Q Consensus 64 ~~~~vLelGcG~G~~~i~la~~g--~~v~~~D~~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~ 141 (222)
+.++|+|||+|.|..++.+++.. .+++..|.+++++.+++ . +++++..+|+-+.
T Consensus 100 ~~~~vvDvGGG~G~~~~~l~~~~P~l~~~v~Dlp~v~~~~~~-----~--------------~rv~~~~gd~f~~----- 155 (241)
T PF00891_consen 100 GFKTVVDVGGGSGHFAIALARAYPNLRATVFDLPEVIEQAKE-----A--------------DRVEFVPGDFFDP----- 155 (241)
T ss_dssp TSSEEEEET-TTSHHHHHHHHHSTTSEEEEEE-HHHHCCHHH-----T--------------TTEEEEES-TTTC-----
T ss_pred CccEEEeccCcchHHHHHHHHHCCCCcceeeccHhhhhcccc-----c--------------cccccccccHHhh-----
Confidence 44689999999999999999874 47999999999888887 1 4889999776521
Q ss_pred cCCCccEEEEeccccCcc--CHHHHHHHHHHhcCCC--eEEEEEEEE
Q 027530 142 VAPPFDYIIGTDVVYAEH--LLEPLLQTIFALSGPK--TTILLGYEI 184 (222)
Q Consensus 142 ~~~~fD~Ii~~d~~y~~~--~~~~ll~~~~~~l~~~--g~~~l~~~~ 184 (222)
.+. +|+++...++++.+ ....+++.+.+.|+|| |+++|....
T Consensus 156 ~P~-~D~~~l~~vLh~~~d~~~~~iL~~~~~al~pg~~g~llI~e~~ 201 (241)
T PF00891_consen 156 LPV-ADVYLLRHVLHDWSDEDCVKILRNAAAALKPGKDGRLLIIEMV 201 (241)
T ss_dssp CSS-ESEEEEESSGGGS-HHHHHHHHHHHHHHSEECTTEEEEEEEEE
T ss_pred hcc-ccceeeehhhhhcchHHHHHHHHHHHHHhCCCCCCeEEEEeec
Confidence 133 99999999998754 4566899999999998 999998876
No 166
>TIGR00417 speE spermidine synthase. the SpeE subunit of spermidine synthase catalysesthe reaction (putrescine + S-adenosylmethioninamine = spermidine + 5'-methylthioadenosine) and is involved in polyamine biosynthesis and in the biosynthesis of spermidine from arganine. The region between residues 77 and 120 of the seed alignment is thought to be involved in binding to decarboxylated SAM.
Probab=98.90 E-value=2.6e-08 Score=82.40 Aligned_cols=106 Identities=13% Similarity=-0.008 Sum_probs=71.4
Q ss_pred CCeEEEeCCCccHHHHHHHHhC--CEEEEecc-hhhHHHHHHHHHHhhccccccCCCCCCCCCceEEEEeecCCCccccc
Q 027530 65 GKRVIELGAGCGVAGFGMALLG--CNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSGNLLGSIQAVELDWGNEDHIKA 141 (222)
Q Consensus 65 ~~~vLelGcG~G~~~i~la~~g--~~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~ 141 (222)
.++||+||||+|..+..+++.. .+|+++|+ +++++.+++++....... ...++++...|.... ...
T Consensus 73 p~~VL~iG~G~G~~~~~ll~~~~~~~v~~veid~~vi~~a~~~~~~~~~~~---------~~~~v~i~~~D~~~~--l~~ 141 (270)
T TIGR00417 73 PKHVLVIGGGDGGVLREVLKHKSVEKATLVDIDEKVIELSKKFLPSLAGSY---------DDPRVDLQIDDGFKF--LAD 141 (270)
T ss_pred CCEEEEEcCCchHHHHHHHhCCCcceEEEEeCCHHHHHHHHHHhHhhcccc---------cCCceEEEECchHHH--HHh
Confidence 4599999999999888777664 37999999 569999999875432110 123566665332211 111
Q ss_pred cCCCccEEEEeccccCc--cC--HHHHHHHHHHhcCCCeEEEEE
Q 027530 142 VAPPFDYIIGTDVVYAE--HL--LEPLLQTIFALSGPKTTILLG 181 (222)
Q Consensus 142 ~~~~fD~Ii~~d~~y~~--~~--~~~ll~~~~~~l~~~g~~~l~ 181 (222)
..++||+|++....... .. ...+++.+.++|+|||++++.
T Consensus 142 ~~~~yDvIi~D~~~~~~~~~~l~~~ef~~~~~~~L~pgG~lv~~ 185 (270)
T TIGR00417 142 TENTFDVIIVDSTDPVGPAETLFTKEFYELLKKALNEDGIFVAQ 185 (270)
T ss_pred CCCCccEEEEeCCCCCCcccchhHHHHHHHHHHHhCCCcEEEEc
Confidence 25689999975432111 11 357889999999999998875
No 167
>PTZ00338 dimethyladenosine transferase-like protein; Provisional
Probab=98.90 E-value=1.9e-08 Score=84.07 Aligned_cols=81 Identities=19% Similarity=0.203 Sum_probs=64.0
Q ss_pred CCCCCCeEEEeCCCccHHHHHHHHhCCEEEEecc-hhhHHHHHHHHHHhhccccccCCCCCCCCCceEEEEeecCCCccc
Q 027530 61 SKLKGKRVIELGAGCGVAGFGMALLGCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSGNLLGSIQAVELDWGNEDHI 139 (222)
Q Consensus 61 ~~~~~~~vLelGcG~G~~~i~la~~g~~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~ 139 (222)
...++.+|||+|||+|.++..++..+.+|+++|+ +++++.+++++..++. ..++++...|+.+..
T Consensus 33 ~~~~~~~VLEIG~G~G~LT~~Ll~~~~~V~avEiD~~li~~l~~~~~~~~~------------~~~v~ii~~Dal~~~-- 98 (294)
T PTZ00338 33 AIKPTDTVLEIGPGTGNLTEKLLQLAKKVIAIEIDPRMVAELKKRFQNSPL------------ASKLEVIEGDALKTE-- 98 (294)
T ss_pred CCCCcCEEEEecCchHHHHHHHHHhCCcEEEEECCHHHHHHHHHHHHhcCC------------CCcEEEEECCHhhhc--
Confidence 3446789999999999999999999889999999 5699999999876542 247888886665432
Q ss_pred cccCCCccEEEEeccccCc
Q 027530 140 KAVAPPFDYIIGTDVVYAE 158 (222)
Q Consensus 140 ~~~~~~fD~Ii~~d~~y~~ 158 (222)
...||.|++|.+++..
T Consensus 99 ---~~~~d~VvaNlPY~Is 114 (294)
T PTZ00338 99 ---FPYFDVCVANVPYQIS 114 (294)
T ss_pred ---ccccCEEEecCCcccC
Confidence 2468999998877654
No 168
>KOG2899 consensus Predicted methyltransferase [General function prediction only]
Probab=98.89 E-value=1.2e-08 Score=81.02 Aligned_cols=123 Identities=14% Similarity=0.289 Sum_probs=78.9
Q ss_pred CCCCCCCeEEEeCCCccHHHHHHHHh-CCE-EEEecch-hhHHHHHHHHHHhhccccccC------------CCCC----
Q 027530 60 PSKLKGKRVIELGAGCGVAGFGMALL-GCN-VITTDQI-EVLPLLKRNVEWNTSRISQMN------------PGSG---- 120 (222)
Q Consensus 60 ~~~~~~~~vLelGcG~G~~~i~la~~-g~~-v~~~D~~-~~l~~~~~n~~~n~~~~~~~~------------~~~~---- 120 (222)
.+.+.++.+|||||-+|.+++.+|+. |++ |.++|++ ..+..|++|++.-........ |.+.
T Consensus 54 ~~~f~~~~~LDIGCNsG~lt~~iak~F~~r~iLGvDID~~LI~~Ark~~r~~~~~~~~~~~~~~~~~~~~~~~is~~~~a 133 (288)
T KOG2899|consen 54 KDWFEPKQALDIGCNSGFLTLSIAKDFGPRRILGVDIDPVLIQRARKEIRFPCDHETEVSGKFPASFGVQFGPISQRNEA 133 (288)
T ss_pred ccccCcceeEeccCCcchhHHHHHHhhccceeeEeeccHHHHHHHHHhccccccccccccCCCccccccccccccccccc
Confidence 46788899999999999999999975 664 9999995 489999998764221100000 0000
Q ss_pred ------CCCCceEEEEeec--CCCccccccCCCccEEEEeccccC------ccCHHHHHHHHHHhcCCCeEEEEEE
Q 027530 121 ------NLLGSIQAVELDW--GNEDHIKAVAPPFDYIIGTDVVYA------EHLLEPLLQTIFALSGPKTTILLGY 182 (222)
Q Consensus 121 ------~~~~~v~~~~~d~--~~~~~~~~~~~~fD~Ii~~d~~y~------~~~~~~ll~~~~~~l~~~g~~~l~~ 182 (222)
....++.+..... ...+-+....+.||+|+|-.+.-| ++-+..+++.+.++|.|||++++.-
T Consensus 134 ~~a~t~~~p~n~~f~~~n~vle~~dfl~~~~~~fDiIlcLSiTkWIHLNwgD~GL~~ff~kis~ll~pgGiLvvEP 209 (288)
T KOG2899|consen 134 DRAFTTDFPDNVWFQKENYVLESDDFLDMIQPEFDIILCLSITKWIHLNWGDDGLRRFFRKISSLLHPGGILVVEP 209 (288)
T ss_pred cccccccCCcchhcccccEEEecchhhhhccccccEEEEEEeeeeEecccccHHHHHHHHHHHHhhCcCcEEEEcC
Confidence 0111111111000 111112234678999998877654 3447889999999999999988854
No 169
>TIGR00308 TRM1 tRNA(guanine-26,N2-N2) methyltransferase. This enzyme is responsible for two methylations of a characteristic guanine of most tRNA molecules. The activity has been demonstrated for eukaryotic and archaeal proteins, which are active when expressed in E. coli, a species that lacks this enzyme. At least one Eubacterium, Aquifex aeolicus, has an ortholog, as do all completed archaeal genomes.
Probab=98.88 E-value=2e-08 Score=86.47 Aligned_cols=99 Identities=19% Similarity=0.228 Sum_probs=76.9
Q ss_pred CCeEEEeCCCccHHHHHHHHh--CC-EEEEecc-hhhHHHHHHHHHHhhccccccCCCCCCCCCceEEEEeecCCCcccc
Q 027530 65 GKRVIELGAGCGVAGFGMALL--GC-NVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSGNLLGSIQAVELDWGNEDHIK 140 (222)
Q Consensus 65 ~~~vLelGcG~G~~~i~la~~--g~-~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~ 140 (222)
+.+|||+.||+|..|+.++.. |+ +|++.|. +++++.+++|++.|+. .++.+.+.|..... .
T Consensus 45 ~~~vLD~faGsG~rgir~a~e~~ga~~Vv~nD~n~~Av~~i~~N~~~N~~-------------~~~~v~~~Da~~~l--~ 109 (374)
T TIGR00308 45 YINIADALSASGIRAIRYAHEIEGVREVFANDINPKAVESIKNNVEYNSV-------------ENIEVPNEDAANVL--R 109 (374)
T ss_pred CCEEEECCCchhHHHHHHHhhCCCCCEEEEEeCCHHHHHHHHHHHHHhCC-------------CcEEEEchhHHHHH--H
Confidence 358999999999999999987 55 6999999 7799999999999974 25667765543321 1
Q ss_pred ccCCCccEEEEeccccCccCHHHHHHHHHHhcCCCeEEEEEE
Q 027530 141 AVAPPFDYIIGTDVVYAEHLLEPLLQTIFALSGPKTTILLGY 182 (222)
Q Consensus 141 ~~~~~fD~Ii~~d~~y~~~~~~~ll~~~~~~l~~~g~~~l~~ 182 (222)
....+||+|.. |+ |. ...+++..+.+.++++|.++++.
T Consensus 110 ~~~~~fDvIdl-DP-fG--s~~~fld~al~~~~~~glL~vTa 147 (374)
T TIGR00308 110 YRNRKFHVIDI-DP-FG--TPAPFVDSAIQASAERGLLLVTA 147 (374)
T ss_pred HhCCCCCEEEe-CC-CC--CcHHHHHHHHHhcccCCEEEEEe
Confidence 12357999987 55 43 44579999999999999999874
No 170
>PRK03612 spermidine synthase; Provisional
Probab=98.88 E-value=2.4e-08 Score=89.76 Aligned_cols=132 Identities=14% Similarity=0.052 Sum_probs=83.5
Q ss_pred CCCeEEEeCCCccHHHHHHHHhC--CEEEEecc-hhhHHHHHHHHHHhhccccccCCCCCCCCCceEEEEeecCCCcccc
Q 027530 64 KGKRVIELGAGCGVAGFGMALLG--CNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSGNLLGSIQAVELDWGNEDHIK 140 (222)
Q Consensus 64 ~~~~vLelGcG~G~~~i~la~~g--~~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~ 140 (222)
+.++|||||||+|..+..+++.. .+|+++|+ +++++.+++|...+...... -..+++++...|-.+. ..
T Consensus 297 ~~~rVL~IG~G~G~~~~~ll~~~~v~~v~~VEid~~vi~~ar~~~~l~~~~~~~------~~dprv~vi~~Da~~~--l~ 368 (521)
T PRK03612 297 RPRRVLVLGGGDGLALREVLKYPDVEQVTLVDLDPAMTELARTSPALRALNGGA------LDDPRVTVVNDDAFNW--LR 368 (521)
T ss_pred CCCeEEEEcCCccHHHHHHHhCCCcCeEEEEECCHHHHHHHHhCCcchhhhccc------cCCCceEEEEChHHHH--HH
Confidence 45799999999999998888775 47999999 67999999864322211000 0124677777554322 12
Q ss_pred ccCCCccEEEEeccccCcc-----CHHHHHHHHHHhcCCCeEEEEEEEE--cChhHHHHHHHHHhc-CCeE
Q 027530 141 AVAPPFDYIIGTDVVYAEH-----LLEPLLQTIFALSGPKTTILLGYEI--RSTSVHEQMLQMWKS-NFNV 203 (222)
Q Consensus 141 ~~~~~fD~Ii~~d~~y~~~-----~~~~ll~~~~~~l~~~g~~~l~~~~--r~~~~~~~f~~~~~~-~~~v 203 (222)
...++||+|+++.+-.... .-.++++.++++|+|||.+++.... ..........+.+++ +|.+
T Consensus 369 ~~~~~fDvIi~D~~~~~~~~~~~L~t~ef~~~~~~~L~pgG~lv~~~~~~~~~~~~~~~i~~~l~~~gf~v 439 (521)
T PRK03612 369 KLAEKFDVIIVDLPDPSNPALGKLYSVEFYRLLKRRLAPDGLLVVQSTSPYFAPKAFWSIEATLEAAGLAT 439 (521)
T ss_pred hCCCCCCEEEEeCCCCCCcchhccchHHHHHHHHHhcCCCeEEEEecCCcccchHHHHHHHHHHHHcCCEE
Confidence 2346899999863321111 1235889999999999998875421 112334455555554 4733
No 171
>PF08704 GCD14: tRNA methyltransferase complex GCD14 subunit; InterPro: IPR014816 GCD14 is a subunit of the tRNA methyltransferase complex and is required for 1-methyladenosine modification and maturation of initiator methionyl-tRNA []. ; GO: 0016429 tRNA (adenine-N1-)-methyltransferase activity, 0030488 tRNA methylation; PDB: 2YVL_C 1YB2_A 2B25_B 1O54_A 2PWY_B 1I9G_A 3LGA_B 3LHD_C 3MB5_A.
Probab=98.84 E-value=9.6e-08 Score=77.60 Aligned_cols=123 Identities=16% Similarity=0.125 Sum_probs=82.5
Q ss_pred CCCCCCeEEEeCCCccHHHHHHHHh-C--CEEEEecc-hhhHHHHHHHHHHhhccccccCCCCCCCCCceEEEEeecCCC
Q 027530 61 SKLKGKRVIELGAGCGVAGFGMALL-G--CNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSGNLLGSIQAVELDWGNE 136 (222)
Q Consensus 61 ~~~~~~~vLelGcG~G~~~i~la~~-g--~~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~v~~~~~d~~~~ 136 (222)
...+|++|||-|.|+|.+++++++. | .+|+..|. ++..+.|++|++..++. .++++...|+.+.
T Consensus 37 ~i~pG~~VlEaGtGSG~lt~~l~r~v~p~G~v~t~E~~~~~~~~A~~n~~~~gl~------------~~v~~~~~Dv~~~ 104 (247)
T PF08704_consen 37 DIRPGSRVLEAGTGSGSLTHALARAVGPTGHVYTYEFREDRAEKARKNFERHGLD------------DNVTVHHRDVCEE 104 (247)
T ss_dssp T--TT-EEEEE--TTSHHHHHHHHHHTTTSEEEEEESSHHHHHHHHHHHHHTTCC------------TTEEEEES-GGCG
T ss_pred CCCCCCEEEEecCCcHHHHHHHHHHhCCCeEEEccccCHHHHHHHHHHHHHcCCC------------CCceeEecceecc
Confidence 5678999999999999999999975 3 37999999 77999999999998853 5899999887542
Q ss_pred ccccccCCCccEEEEeccccCccCHHHHHHHHHHhc-CCCeEEEEEEEEcChhHHHHHHHHHh-cCCe
Q 027530 137 DHIKAVAPPFDYIIGTDVVYAEHLLEPLLQTIFALS-GPKTTILLGYEIRSTSVHEQMLQMWK-SNFN 202 (222)
Q Consensus 137 ~~~~~~~~~fD~Ii~~d~~y~~~~~~~ll~~~~~~l-~~~g~~~l~~~~r~~~~~~~f~~~~~-~~~~ 202 (222)
-........+|.|+.- .......+..+.+.| ++||++..-.+. -.. .....+.++ .+|.
T Consensus 105 g~~~~~~~~~DavfLD-----lp~Pw~~i~~~~~~L~~~gG~i~~fsP~-ieQ-v~~~~~~L~~~gf~ 165 (247)
T PF08704_consen 105 GFDEELESDFDAVFLD-----LPDPWEAIPHAKRALKKPGGRICCFSPC-IEQ-VQKTVEALREHGFT 165 (247)
T ss_dssp --STT-TTSEEEEEEE-----SSSGGGGHHHHHHHE-EEEEEEEEEESS-HHH-HHHHHHHHHHTTEE
T ss_pred cccccccCcccEEEEe-----CCCHHHHHHHHHHHHhcCCceEEEECCC-HHH-HHHHHHHHHHCCCe
Confidence 2111224689999864 335566788888999 788876554332 222 344455553 4653
No 172
>PF05724 TPMT: Thiopurine S-methyltransferase (TPMT); InterPro: IPR008854 This family consists of thiopurine S-methyltransferase proteins from both eukaryotes and prokaryotes. Thiopurine S-methyltransferase (TPMT) is a cytosolic enzyme that catalyses S-methylation of aromatic and heterocyclic sulphydryl compounds, including anticancer and immunosuppressive thiopurines [].; GO: 0008119 thiopurine S-methyltransferase activity, 0008152 metabolic process, 0005737 cytoplasm; PDB: 1PJZ_A 2H11_A 2BZG_A 3LCC_A 3BGD_A 2GB4_A 3BGI_B.
Probab=98.84 E-value=5.5e-08 Score=77.84 Aligned_cols=156 Identities=19% Similarity=0.155 Sum_probs=98.9
Q ss_pred hHHHHHHHHhhhccCCCCCCCCCCCCeEEEeCCCccHHHHHHHHhCCEEEEecchh-hHHHHH-HHHHHhhccccccCCC
Q 027530 41 ASVVFVKYLEKNCRKGRFCPSKLKGKRVIELGAGCGVAGFGMALLGCNVITTDQIE-VLPLLK-RNVEWNTSRISQMNPG 118 (222)
Q Consensus 41 ~~~~la~~l~~~~~~~~~~~~~~~~~~vLelGcG~G~~~i~la~~g~~v~~~D~~~-~l~~~~-~n~~~n~~~~~~~~~~ 118 (222)
....|.+|+.+. ...++.+||..|||.|.-.+.+|.+|.+|+|+|+++ +++.+. +|....... .....
T Consensus 22 ~~p~L~~~~~~l--------~~~~~~rvLvPgCG~g~D~~~La~~G~~VvGvDls~~Ai~~~~~e~~~~~~~~--~~~~~ 91 (218)
T PF05724_consen 22 PNPALVEYLDSL--------ALKPGGRVLVPGCGKGYDMLWLAEQGHDVVGVDLSPTAIEQAFEENNLEPTVT--SVGGF 91 (218)
T ss_dssp STHHHHHHHHHH--------TTSTSEEEEETTTTTSCHHHHHHHTTEEEEEEES-HHHHHHHHHHCTTEEECT--TCTTE
T ss_pred CCHHHHHHHHhc--------CCCCCCeEEEeCCCChHHHHHHHHCCCeEEEEecCHHHHHHHHHHhccCCCcc--cccce
Confidence 378888998762 233557999999999999999999999999999954 888773 222111100 00000
Q ss_pred CCCCCCceEEEEeecCCCccccccCCCccEEEEecccc--CccCHHHHHHHHHHhcCCCeEEEEEEEE-----cC-h---
Q 027530 119 SGNLLGSIQAVELDWGNEDHIKAVAPPFDYIIGTDVVY--AEHLLEPLLQTIFALSGPKTTILLGYEI-----RS-T--- 187 (222)
Q Consensus 119 ~~~~~~~v~~~~~d~~~~~~~~~~~~~fD~Ii~~d~~y--~~~~~~~ll~~~~~~l~~~g~~~l~~~~-----r~-~--- 187 (222)
......+|++.+.|.-+... ...++||+|+=..++. ..+......+.+.++|+|+|.+++..-. +. +
T Consensus 92 ~~~~~~~i~~~~gDfF~l~~--~~~g~fD~iyDr~~l~Alpp~~R~~Ya~~l~~ll~p~g~~lLi~l~~~~~~~~GPPf~ 169 (218)
T PF05724_consen 92 KRYQAGRITIYCGDFFELPP--EDVGKFDLIYDRTFLCALPPEMRERYAQQLASLLKPGGRGLLITLEYPQGEMEGPPFS 169 (218)
T ss_dssp EEETTSSEEEEES-TTTGGG--SCHHSEEEEEECSSTTTS-GGGHHHHHHHHHHCEEEEEEEEEEEEES-CSCSSSSS--
T ss_pred eeecCCceEEEEcccccCCh--hhcCCceEEEEecccccCCHHHHHHHHHHHHHHhCCCCcEEEEEEEcCCcCCCCcCCC
Confidence 00123467888866544321 1225899998655553 3567888999999999999995443321 11 1
Q ss_pred hHHHHHHHHHhcCCeEEEecC
Q 027530 188 SVHEQMLQMWKSNFNVKLVPK 208 (222)
Q Consensus 188 ~~~~~f~~~~~~~~~v~~v~~ 208 (222)
-..+++.+.+..+|+++.+..
T Consensus 170 v~~~ev~~l~~~~f~i~~l~~ 190 (218)
T PF05724_consen 170 VTEEEVRELFGPGFEIEELEE 190 (218)
T ss_dssp --HHHHHHHHTTTEEEEEEEE
T ss_pred CCHHHHHHHhcCCcEEEEEec
Confidence 124556666678888876665
No 173
>COG1041 Predicted DNA modification methylase [DNA replication, recombination, and repair]
Probab=98.83 E-value=7.7e-08 Score=80.86 Aligned_cols=119 Identities=18% Similarity=0.192 Sum_probs=87.7
Q ss_pred HHHHHHHHhhhccCCCCCCCCCCCCeEEEeCCCccHHHHHHHHhCCEEEEecchh-hHHHHHHHHHHhhccccccCCCCC
Q 027530 42 SVVFVKYLEKNCRKGRFCPSKLKGKRVIELGAGCGVAGFGMALLGCNVITTDQIE-VLPLLKRNVEWNTSRISQMNPGSG 120 (222)
Q Consensus 42 ~~~la~~l~~~~~~~~~~~~~~~~~~vLelGcG~G~~~i~la~~g~~v~~~D~~~-~l~~~~~n~~~n~~~~~~~~~~~~ 120 (222)
.+.||+.+-+- ....+|..|||=-||||-.-+.+...|++|+|+|+++ |++-++.|++.-++.
T Consensus 182 ~P~lAR~mVNL-------a~v~~G~~vlDPFcGTGgiLiEagl~G~~viG~Did~~mv~gak~Nl~~y~i~--------- 245 (347)
T COG1041 182 DPRLARAMVNL-------ARVKRGELVLDPFCGTGGILIEAGLMGARVIGSDIDERMVRGAKINLEYYGIE--------- 245 (347)
T ss_pred CHHHHHHHHHH-------hccccCCEeecCcCCccHHHHhhhhcCceEeecchHHHHHhhhhhhhhhhCcC---------
Confidence 35667666543 3566899999999999999999999999999999955 999999999977632
Q ss_pred CCCCceEEEEeecCCCccccccCCCccEEEEeccccCc----------cCHHHHHHHHHHhcCCCeEEEEEEE
Q 027530 121 NLLGSIQAVELDWGNEDHIKAVAPPFDYIIGTDVVYAE----------HLLEPLLQTIFALSGPKTTILLGYE 183 (222)
Q Consensus 121 ~~~~~v~~~~~d~~~~~~~~~~~~~fD~Ii~~d~~y~~----------~~~~~ll~~~~~~l~~~g~~~l~~~ 183 (222)
...+.. ..+...++..+.++|.|+.-+ .|-. .....+++.+.+.|++||.+.++.+
T Consensus 246 ----~~~~~~--~~Da~~lpl~~~~vdaIatDP-PYGrst~~~~~~l~~Ly~~~le~~~evLk~gG~~vf~~p 311 (347)
T COG1041 246 ----DYPVLK--VLDATNLPLRDNSVDAIATDP-PYGRSTKIKGEGLDELYEEALESASEVLKPGGRIVFAAP 311 (347)
T ss_pred ----ceeEEE--ecccccCCCCCCccceEEecC-CCCcccccccccHHHHHHHHHHHHHHHhhcCcEEEEecC
Confidence 222222 123333334455799998654 4542 2367788999999999999988877
No 174
>PF05219 DREV: DREV methyltransferase; InterPro: IPR007884 This family contains DREV protein homologues from several eukaryotes. The function of this protein is unknown []. However, these proteins appear to be related to other methyltransferases.
Probab=98.82 E-value=6e-08 Score=78.36 Aligned_cols=95 Identities=24% Similarity=0.178 Sum_probs=73.5
Q ss_pred CCCCeEEEeCCCccHHHHHHHHhCCEEEEecchh-hHHHHHHHHHHhhccccccCCCCCCCCCceEEEEeecCCCccccc
Q 027530 63 LKGKRVIELGAGCGVAGFGMALLGCNVITTDQIE-VLPLLKRNVEWNTSRISQMNPGSGNLLGSIQAVELDWGNEDHIKA 141 (222)
Q Consensus 63 ~~~~~vLelGcG~G~~~i~la~~g~~v~~~D~~~-~l~~~~~n~~~n~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~ 141 (222)
.+..++||||+|.|-++..++..-.+|++|+.+. |...+ ++.+.. -....+|.+.
T Consensus 93 ~~~~~lLDlGAGdG~VT~~l~~~f~~v~aTE~S~~Mr~rL----~~kg~~---------------vl~~~~w~~~----- 148 (265)
T PF05219_consen 93 WKDKSLLDLGAGDGEVTERLAPLFKEVYATEASPPMRWRL----SKKGFT---------------VLDIDDWQQT----- 148 (265)
T ss_pred ccCCceEEecCCCcHHHHHHHhhcceEEeecCCHHHHHHH----HhCCCe---------------EEehhhhhcc-----
Confidence 4567899999999999999999888999999865 54433 322211 1233345532
Q ss_pred cCCCccEEEEeccccCccCHHHHHHHHHHhcCCCeEEEEEE
Q 027530 142 VAPPFDYIIGTDVVYAEHLLEPLLQTIFALSGPKTTILLGY 182 (222)
Q Consensus 142 ~~~~fD~Ii~~d~~y~~~~~~~ll~~~~~~l~~~g~~~l~~ 182 (222)
+.+||+|.+-.++=.......+++.+++.|+|+|+++++.
T Consensus 149 -~~~fDvIscLNvLDRc~~P~~LL~~i~~~l~p~G~lilAv 188 (265)
T PF05219_consen 149 -DFKFDVISCLNVLDRCDRPLTLLRDIRRALKPNGRLILAV 188 (265)
T ss_pred -CCceEEEeehhhhhccCCHHHHHHHHHHHhCCCCEEEEEE
Confidence 4689999999999777888899999999999999999864
No 175
>KOG2361 consensus Predicted methyltransferase [General function prediction only]
Probab=98.82 E-value=1.8e-08 Score=80.14 Aligned_cols=113 Identities=16% Similarity=0.217 Sum_probs=79.1
Q ss_pred eEEEeCCCccHHHHHHHHhC----CEEEEecc-hhhHHHHHHHHHHhhccccccCCCCCCCCCceEEEEeecCCCc-ccc
Q 027530 67 RVIELGAGCGVAGFGMALLG----CNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSGNLLGSIQAVELDWGNED-HIK 140 (222)
Q Consensus 67 ~vLelGcG~G~~~i~la~~g----~~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~v~~~~~d~~~~~-~~~ 140 (222)
+|||+|||.|-....+.+-. -+|.+.|. +.+++..++|...+. .++.....|..... ..+
T Consensus 74 ~ilEvGCGvGNtvfPll~~~~n~~l~v~acDfsp~Ai~~vk~~~~~~e--------------~~~~afv~Dlt~~~~~~~ 139 (264)
T KOG2361|consen 74 TILEVGCGVGNTVFPLLKTSPNNRLKVYACDFSPRAIELVKKSSGYDE--------------SRVEAFVWDLTSPSLKEP 139 (264)
T ss_pred hheeeccCCCcccchhhhcCCCCCeEEEEcCCChHHHHHHHhccccch--------------hhhcccceeccchhccCC
Confidence 79999999998888777653 36999998 679999999887654 23333333333332 223
Q ss_pred ccCCCccEEEEecccc--CccCHHHHHHHHHHhcCCCeEEEEEEEEcChhHHHHH
Q 027530 141 AVAPPFDYIIGTDVVY--AEHLLEPLLQTIFALSGPKTTILLGYEIRSTSVHEQM 193 (222)
Q Consensus 141 ~~~~~fD~Ii~~d~~y--~~~~~~~ll~~~~~~l~~~g~~~l~~~~r~~~~~~~f 193 (222)
...+++|+|++-=++- +++.....++.+.++|||||.+++-+..|.......|
T Consensus 140 ~~~~svD~it~IFvLSAi~pek~~~a~~nl~~llKPGG~llfrDYg~~DlaqlRF 194 (264)
T KOG2361|consen 140 PEEGSVDIITLIFVLSAIHPEKMQSVIKNLRTLLKPGGSLLFRDYGRYDLAQLRF 194 (264)
T ss_pred CCcCccceEEEEEEEeccChHHHHHHHHHHHHHhCCCcEEEEeecccchHHHHhc
Confidence 3467899987654442 2455677899999999999999998776665433333
No 176
>PLN02589 caffeoyl-CoA O-methyltransferase
Probab=98.80 E-value=5.2e-08 Score=79.29 Aligned_cols=103 Identities=16% Similarity=0.040 Sum_probs=77.6
Q ss_pred CCCeEEEeCCCccHHHHHHHHh---CCEEEEecc-hhhHHHHHHHHHHhhccccccCCCCCCCCCceEEEEeecCCCccc
Q 027530 64 KGKRVIELGAGCGVAGFGMALL---GCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSGNLLGSIQAVELDWGNEDHI 139 (222)
Q Consensus 64 ~~~~vLelGcG~G~~~i~la~~---g~~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~ 139 (222)
.-++|||||+++|+-++.+|.. +++|+.+|. ++..+.|++|++..++. .+|++..++..+....
T Consensus 79 ~ak~iLEiGT~~GySal~la~al~~~g~v~tiE~~~~~~~~Ar~~~~~ag~~------------~~I~~~~G~a~e~L~~ 146 (247)
T PLN02589 79 NAKNTMEIGVYTGYSLLATALALPEDGKILAMDINRENYELGLPVIQKAGVA------------HKIDFREGPALPVLDQ 146 (247)
T ss_pred CCCEEEEEeChhhHHHHHHHhhCCCCCEEEEEeCCHHHHHHHHHHHHHCCCC------------CceEEEeccHHHHHHH
Confidence 4479999999999999988864 458999998 66889999999988753 6888888665432111
Q ss_pred -cc---cCCCccEEEEeccccCccCHHHHHHHHHHhcCCCeEEEEE
Q 027530 140 -KA---VAPPFDYIIGTDVVYAEHLLEPLLQTIFALSGPKTTILLG 181 (222)
Q Consensus 140 -~~---~~~~fD~Ii~~d~~y~~~~~~~ll~~~~~~l~~~g~~~l~ 181 (222)
.. ..++||+|+.- .+.......+..+.++|+|||.+++-
T Consensus 147 l~~~~~~~~~fD~iFiD---adK~~Y~~y~~~~l~ll~~GGviv~D 189 (247)
T PLN02589 147 MIEDGKYHGTFDFIFVD---ADKDNYINYHKRLIDLVKVGGVIGYD 189 (247)
T ss_pred HHhccccCCcccEEEec---CCHHHhHHHHHHHHHhcCCCeEEEEc
Confidence 10 13689999864 22556677888888999999997653
No 177
>KOG3010 consensus Methyltransferase [General function prediction only]
Probab=98.79 E-value=1.2e-08 Score=81.19 Aligned_cols=98 Identities=17% Similarity=0.157 Sum_probs=67.5
Q ss_pred eEEEeCCCccHHHHHHHHhCCEEEEecc-hhhHHHHHHHHHHhhccccccCCCCCCCCCceEEEEeecCCCccccccCCC
Q 027530 67 RVIELGAGCGVAGFGMALLGCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSGNLLGSIQAVELDWGNEDHIKAVAPP 145 (222)
Q Consensus 67 ~vLelGcG~G~~~i~la~~g~~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~ 145 (222)
.++|+|||+|..++.+|..-.+|++||. +.||+.+++.-...-.. ...+... .+...+...+++
T Consensus 36 ~a~DvG~G~Gqa~~~iae~~k~VIatD~s~~mL~~a~k~~~~~y~~------------t~~~ms~---~~~v~L~g~e~S 100 (261)
T KOG3010|consen 36 LAWDVGTGNGQAARGIAEHYKEVIATDVSEAMLKVAKKHPPVTYCH------------TPSTMSS---DEMVDLLGGEES 100 (261)
T ss_pred eEEEeccCCCcchHHHHHhhhhheeecCCHHHHHHhhcCCCccccc------------CCccccc---cccccccCCCcc
Confidence 7999999999888999988678999999 55999877633211110 0001111 111122223789
Q ss_pred ccEEEEeccccCccCHHHHHHHHHHhcCCCeEEEE
Q 027530 146 FDYIIGTDVVYAEHLLEPLLQTIFALSGPKTTILL 180 (222)
Q Consensus 146 fD~Ii~~d~~y~~~~~~~ll~~~~~~l~~~g~~~l 180 (222)
.|+|+++.++|+.+ .+.+.+.+.++|++.|-++.
T Consensus 101 VDlI~~Aqa~HWFd-le~fy~~~~rvLRk~Gg~ia 134 (261)
T KOG3010|consen 101 VDLITAAQAVHWFD-LERFYKEAYRVLRKDGGLIA 134 (261)
T ss_pred eeeehhhhhHHhhc-hHHHHHHHHHHcCCCCCEEE
Confidence 99999999997654 68999999999997774433
No 178
>PF01170 UPF0020: Putative RNA methylase family UPF0020; InterPro: IPR000241 This domain is probably a methylase. It is associated with the THUMP domain that also occurs with RNA modification domains [].; PDB: 3LDU_A 3LDG_A 3K0B_A 3V8V_B 3V97_A 3TLJ_A 3TM5_B 3TM4_A 3TMA_A.
Probab=98.78 E-value=5.2e-08 Score=75.73 Aligned_cols=118 Identities=17% Similarity=0.165 Sum_probs=77.5
Q ss_pred HHHHHHHhhhccCCCCCCCCCCCCeEEEeCCCccHHHHHHHHhCCE-----------EEEecc-hhhHHHHHHHHHHhhc
Q 027530 43 VVFVKYLEKNCRKGRFCPSKLKGKRVIELGAGCGVAGFGMALLGCN-----------VITTDQ-IEVLPLLKRNVEWNTS 110 (222)
Q Consensus 43 ~~la~~l~~~~~~~~~~~~~~~~~~vLelGcG~G~~~i~la~~g~~-----------v~~~D~-~~~l~~~~~n~~~n~~ 110 (222)
..+|.-|..- ....++..|||--||+|.+-+.++..+.. +++.|+ +++++.+++|++..+.
T Consensus 14 ~~lA~~ll~l-------a~~~~~~~vlDP~CGsGtiliEaa~~~~~~~~~~~~~~~~~~g~Di~~~~v~~a~~N~~~ag~ 86 (179)
T PF01170_consen 14 PTLAAALLNL-------AGWRPGDVVLDPFCGSGTILIEAALMGANIPPLNDINELKIIGSDIDPKAVRGARENLKAAGV 86 (179)
T ss_dssp HHHHHHHHHH-------TT--TTS-EEETT-TTSHHHHHHHHHHTTTSTTTH-CH--EEEEESSHHHHHHHHHHHHHTT-
T ss_pred HHHHHHHHHH-------hCCCCCCEEeecCCCCCHHHHHHHHHhhCcccccccccccEEecCCCHHHHHHHHHHHHhccc
Confidence 3555555443 23446789999999999999998876543 679999 6699999999998774
Q ss_pred cccccCCCCCCCCCceEEEEeecCCCccccccCCCccEEEEeccccCc--------cCHHHHHHHHHHhcCCCeEEEEEE
Q 027530 111 RISQMNPGSGNLLGSIQAVELDWGNEDHIKAVAPPFDYIIGTDVVYAE--------HLLEPLLQTIFALSGPKTTILLGY 182 (222)
Q Consensus 111 ~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~fD~Ii~~d~~y~~--------~~~~~ll~~~~~~l~~~g~~~l~~ 182 (222)
. ..+.+.+.|..+. +...+.+|+||+++++-.. .....+++.+.+++++ ..+++..
T Consensus 87 ~------------~~i~~~~~D~~~l---~~~~~~~d~IvtnPPyG~r~~~~~~~~~ly~~~~~~~~~~l~~-~~v~l~~ 150 (179)
T PF01170_consen 87 E------------DYIDFIQWDAREL---PLPDGSVDAIVTNPPYGRRLGSKKDLEKLYRQFLRELKRVLKP-RAVFLTT 150 (179)
T ss_dssp C------------GGEEEEE--GGGG---GGTTSBSCEEEEE--STTSHCHHHHHHHHHHHHHHHHHCHSTT-CEEEEEE
T ss_pred C------------CceEEEecchhhc---ccccCCCCEEEECcchhhhccCHHHHHHHHHHHHHHHHHHCCC-CEEEEEE
Confidence 3 4677777555433 3346789999999887542 2345577777888888 4444544
Q ss_pred E
Q 027530 183 E 183 (222)
Q Consensus 183 ~ 183 (222)
.
T Consensus 151 ~ 151 (179)
T PF01170_consen 151 S 151 (179)
T ss_dssp S
T ss_pred C
Confidence 3
No 179
>PF02527 GidB: rRNA small subunit methyltransferase G; InterPro: IPR003682 This entry represents a rRNA small subunit methyltransferase G. Previously identified as a glucose-inhibited division protein B that appears to be present and in a single copy in all complete eubacterial genomes so far sequenced. Specifically methylates the N7 position of a guanosine in 16S rRNA [, , ].; GO: 0008649 rRNA methyltransferase activity, 0006364 rRNA processing, 0005737 cytoplasm; PDB: 1XDZ_A 3G88_A 3G8A_B 3G89_B 3G8B_B 1JSX_A.
Probab=98.78 E-value=6.9e-08 Score=75.18 Aligned_cols=121 Identities=21% Similarity=0.291 Sum_probs=79.6
Q ss_pred eEEEeCCCccHHHHHHHHhCC--EEEEecc-hhhHHHHHHHHHHhhccccccCCCCCCCCCceEEEEeecCCCccccccC
Q 027530 67 RVIELGAGCGVAGFGMALLGC--NVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSGNLLGSIQAVELDWGNEDHIKAVA 143 (222)
Q Consensus 67 ~vLelGcG~G~~~i~la~~g~--~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~ 143 (222)
+++|+|+|.|++|+.+|-.-. +|+++|. ..=+..++.-+..-++ .++++.+....+ ....
T Consensus 51 ~~lDiGSGaGfPGipLaI~~p~~~~~LvEs~~KK~~FL~~~~~~L~L-------------~nv~v~~~R~E~----~~~~ 113 (184)
T PF02527_consen 51 KVLDIGSGAGFPGIPLAIARPDLQVTLVESVGKKVAFLKEVVRELGL-------------SNVEVINGRAEE----PEYR 113 (184)
T ss_dssp EEEEETSTTTTTHHHHHHH-TTSEEEEEESSHHHHHHHHHHHHHHT--------------SSEEEEES-HHH----TTTT
T ss_pred eEEecCCCCCChhHHHHHhCCCCcEEEEeCCchHHHHHHHHHHHhCC-------------CCEEEEEeeecc----cccC
Confidence 799999999999999997754 6999997 4455555555554443 368888855543 2346
Q ss_pred CCccEEEEeccccCccCHHHHHHHHHHhcCCCeEEEEEEEEcChhHHHHHHHHHh-cCCeEEEecC
Q 027530 144 PPFDYIIGTDVVYAEHLLEPLLQTIFALSGPKTTILLGYEIRSTSVHEQMLQMWK-SNFNVKLVPK 208 (222)
Q Consensus 144 ~~fD~Ii~~d~~y~~~~~~~ll~~~~~~l~~~g~~~l~~~~r~~~~~~~f~~~~~-~~~~v~~v~~ 208 (222)
.+||+|++--+- .+..++..+..+++++|.+++.-......-.......++ .+.....++.
T Consensus 114 ~~fd~v~aRAv~----~l~~l~~~~~~~l~~~G~~l~~KG~~~~~El~~~~~~~~~~~~~~~~v~~ 175 (184)
T PF02527_consen 114 ESFDVVTARAVA----PLDKLLELARPLLKPGGRLLAYKGPDAEEELEEAKKAWKKLGLKVLSVPE 175 (184)
T ss_dssp T-EEEEEEESSS----SHHHHHHHHGGGEEEEEEEEEEESS--HHHHHTHHHHHHCCCEEEEEEEE
T ss_pred CCccEEEeehhc----CHHHHHHHHHHhcCCCCEEEEEcCCChHHHHHHHHhHHHHhCCEEeeecc
Confidence 899999987554 678899999999999998766433333322333444443 2455555544
No 180
>COG2520 Predicted methyltransferase [General function prediction only]
Probab=98.73 E-value=9.5e-08 Score=80.72 Aligned_cols=106 Identities=20% Similarity=0.138 Sum_probs=81.7
Q ss_pred CCCCeEEEeCCCccHHHHHHHHhCCE-EEEecc-hhhHHHHHHHHHHhhccccccCCCCCCCCCceEEEEeecCCCcccc
Q 027530 63 LKGKRVIELGAGCGVAGFGMALLGCN-VITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSGNLLGSIQAVELDWGNEDHIK 140 (222)
Q Consensus 63 ~~~~~vLelGcG~G~~~i~la~~g~~-v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~ 140 (222)
..|.+|||+-||.|.+++.+|++|+. |+++|+ +++++.+++|+++|++. ..+....+|.....
T Consensus 187 ~~GE~V~DmFAGVGpfsi~~Ak~g~~~V~A~diNP~A~~~L~eNi~LN~v~------------~~v~~i~gD~rev~--- 251 (341)
T COG2520 187 KEGETVLDMFAGVGPFSIPIAKKGRPKVYAIDINPDAVEYLKENIRLNKVE------------GRVEPILGDAREVA--- 251 (341)
T ss_pred cCCCEEEEccCCcccchhhhhhcCCceEEEEecCHHHHHHHHHHHHhcCcc------------ceeeEEeccHHHhh---
Confidence 35899999999999999999999986 999999 88999999999999964 34778886654332
Q ss_pred ccCCCccEEEEeccccCccCHHHHHHHHHHhcCCCeEEEEEEEEcCh
Q 027530 141 AVAPPFDYIIGTDVVYAEHLLEPLLQTIFALSGPKTTILLGYEIRST 187 (222)
Q Consensus 141 ~~~~~fD~Ii~~d~~y~~~~~~~ll~~~~~~l~~~g~~~l~~~~r~~ 187 (222)
.....+|-|+++-+. ....++....+.++++|.+..-...+..
T Consensus 252 ~~~~~aDrIim~~p~----~a~~fl~~A~~~~k~~g~iHyy~~~~e~ 294 (341)
T COG2520 252 PELGVADRIIMGLPK----SAHEFLPLALELLKDGGIIHYYEFVPED 294 (341)
T ss_pred hccccCCEEEeCCCC----cchhhHHHHHHHhhcCcEEEEEeccchh
Confidence 222789999988554 3345777777778888877665444443
No 181
>PRK01581 speE spermidine synthase; Validated
Probab=98.70 E-value=9.3e-08 Score=81.32 Aligned_cols=105 Identities=19% Similarity=0.141 Sum_probs=70.5
Q ss_pred CCCeEEEeCCCccHHHHHHHHhC--CEEEEecc-hhhHHHHHHHHH---HhhccccccCCCCCCCCCceEEEEeecCCCc
Q 027530 64 KGKRVIELGAGCGVAGFGMALLG--CNVITTDQ-IEVLPLLKRNVE---WNTSRISQMNPGSGNLLGSIQAVELDWGNED 137 (222)
Q Consensus 64 ~~~~vLelGcG~G~~~i~la~~g--~~v~~~D~-~~~l~~~~~n~~---~n~~~~~~~~~~~~~~~~~v~~~~~d~~~~~ 137 (222)
..++||+||||.|.....+++.. .+|+++|+ +++++.|++... .+... -...++++...|..+.
T Consensus 150 ~PkrVLIIGgGdG~tlrelLk~~~v~~It~VEIDpeVIelAr~~~~L~~~~~~~---------~~DpRV~vvi~Da~~f- 219 (374)
T PRK01581 150 DPKRVLILGGGDGLALREVLKYETVLHVDLVDLDGSMINMARNVPELVSLNKSA---------FFDNRVNVHVCDAKEF- 219 (374)
T ss_pred CCCEEEEECCCHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHhccccchhcccc---------CCCCceEEEECcHHHH-
Confidence 34699999999999877777764 47999999 669999996321 11110 0135777777554432
Q ss_pred cccccCCCccEEEEeccccCcc------C-HHHHHHHHHHhcCCCeEEEEE
Q 027530 138 HIKAVAPPFDYIIGTDVVYAEH------L-LEPLLQTIFALSGPKTTILLG 181 (222)
Q Consensus 138 ~~~~~~~~fD~Ii~~d~~y~~~------~-~~~ll~~~~~~l~~~g~~~l~ 181 (222)
+....++||+|++. +. ... . -..+++.+++.|+|||++++.
T Consensus 220 -L~~~~~~YDVIIvD-l~-DP~~~~~~~LyT~EFy~~~~~~LkPgGV~V~Q 267 (374)
T PRK01581 220 -LSSPSSLYDVIIID-FP-DPATELLSTLYTSELFARIATFLTEDGAFVCQ 267 (374)
T ss_pred -HHhcCCCccEEEEc-CC-CccccchhhhhHHHHHHHHHHhcCCCcEEEEe
Confidence 12235689999975 21 111 1 256889999999999987664
No 182
>PLN02366 spermidine synthase
Probab=98.69 E-value=3.2e-07 Score=77.13 Aligned_cols=127 Identities=14% Similarity=0.057 Sum_probs=81.2
Q ss_pred CCCeEEEeCCCccHHHHHHHHhC--CEEEEecc-hhhHHHHHHHHHHhhccccccCCCCCCCCCceEEEEeecCCCcccc
Q 027530 64 KGKRVIELGAGCGVAGFGMALLG--CNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSGNLLGSIQAVELDWGNEDHIK 140 (222)
Q Consensus 64 ~~~~vLelGcG~G~~~i~la~~g--~~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~ 140 (222)
+.++||+||||.|.....+++.. .+|+.+|+ +++++.+++.+...... -...++++...|-...-. .
T Consensus 91 ~pkrVLiIGgG~G~~~rellk~~~v~~V~~VEiD~~Vi~~ar~~f~~~~~~---------~~dpRv~vi~~Da~~~l~-~ 160 (308)
T PLN02366 91 NPKKVLVVGGGDGGVLREIARHSSVEQIDICEIDKMVIDVSKKFFPDLAVG---------FDDPRVNLHIGDGVEFLK-N 160 (308)
T ss_pred CCCeEEEEcCCccHHHHHHHhCCCCCeEEEEECCHHHHHHHHHhhhhhccc---------cCCCceEEEEChHHHHHh-h
Confidence 45799999999999988888763 37999999 55999999987542111 013578888755322111 1
Q ss_pred ccCCCccEEEEeccccC--cc---CHHHHHHHHHHhcCCCeEEEEEEE--EcChhHHHHHHHHHhcCC
Q 027530 141 AVAPPFDYIIGTDVVYA--EH---LLEPLLQTIFALSGPKTTILLGYE--IRSTSVHEQMLQMWKSNF 201 (222)
Q Consensus 141 ~~~~~fD~Ii~~d~~y~--~~---~~~~ll~~~~~~l~~~g~~~l~~~--~r~~~~~~~f~~~~~~~~ 201 (222)
...++||+|++. ..-. .. .-..+++.++++|+|+|++.+... .........+.+.++..|
T Consensus 161 ~~~~~yDvIi~D-~~dp~~~~~~L~t~ef~~~~~~~L~pgGvlv~q~~s~~~~~~~~~~i~~tl~~~F 227 (308)
T PLN02366 161 APEGTYDAIIVD-SSDPVGPAQELFEKPFFESVARALRPGGVVCTQAESMWLHMDLIEDLIAICRETF 227 (308)
T ss_pred ccCCCCCEEEEc-CCCCCCchhhhhHHHHHHHHHHhcCCCcEEEECcCCcccchHHHHHHHHHHHHHC
Confidence 124689999973 2211 11 134689999999999999765221 122333455556666555
No 183
>TIGR00755 ksgA dimethyladenosine transferase. Alternate name: S-adenosylmethionine--6-N',N'-adenosyl (rRNA) dimethyltransferase
Probab=98.69 E-value=2.5e-07 Score=75.80 Aligned_cols=75 Identities=19% Similarity=0.242 Sum_probs=56.4
Q ss_pred CCCCCeEEEeCCCccHHHHHHHHhCCEEEEecc-hhhHHHHHHHHHHhhccccccCCCCCCCCCceEEEEeecCCCcccc
Q 027530 62 KLKGKRVIELGAGCGVAGFGMALLGCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSGNLLGSIQAVELDWGNEDHIK 140 (222)
Q Consensus 62 ~~~~~~vLelGcG~G~~~i~la~~g~~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~ 140 (222)
..++.+|||+|||+|.++..+++.+.+|+++|. +++++.+++++.. ..++++...|..+...
T Consensus 27 ~~~~~~VLEiG~G~G~lt~~L~~~~~~v~~iE~d~~~~~~l~~~~~~---------------~~~v~v~~~D~~~~~~-- 89 (253)
T TIGR00755 27 VLEGDVVLEIGPGLGALTEPLLKRAKKVTAIEIDPRLAEILRKLLSL---------------YERLEVIEGDALKVDL-- 89 (253)
T ss_pred CCCcCEEEEeCCCCCHHHHHHHHhCCcEEEEECCHHHHHHHHHHhCc---------------CCcEEEEECchhcCCh--
Confidence 446789999999999999999999989999999 5588888877642 1367777766544321
Q ss_pred ccCCCcc---EEEEecccc
Q 027530 141 AVAPPFD---YIIGTDVVY 156 (222)
Q Consensus 141 ~~~~~fD---~Ii~~d~~y 156 (222)
..|| +|+++.+++
T Consensus 90 ---~~~d~~~~vvsNlPy~ 105 (253)
T TIGR00755 90 ---PDFPKQLKVVSNLPYN 105 (253)
T ss_pred ---hHcCCcceEEEcCChh
Confidence 1455 888887653
No 184
>KOG2187 consensus tRNA uracil-5-methyltransferase and related tRNA-modifying enzymes [Translation, ribosomal structure and biogenesis]
Probab=98.68 E-value=2e-07 Score=81.48 Aligned_cols=125 Identities=12% Similarity=0.085 Sum_probs=94.1
Q ss_pred hHHHHHHHHhhhccCCCCCCCCCCCCeEEEeCCCccHHHHHHHHhCCEEEEecc-hhhHHHHHHHHHHhhccccccCCCC
Q 027530 41 ASVVFVKYLEKNCRKGRFCPSKLKGKRVIELGAGCGVAGFGMALLGCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGS 119 (222)
Q Consensus 41 ~~~~la~~l~~~~~~~~~~~~~~~~~~vLelGcG~G~~~i~la~~g~~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~ 119 (222)
.+.+|-.++.+++ ....++.+||+.||||+.|+.+|+...+|+++++ +++++-|+.|+..|++.
T Consensus 367 ~aevLys~i~e~~-------~l~~~k~llDv~CGTG~iglala~~~~~ViGvEi~~~aV~dA~~nA~~Ngis-------- 431 (534)
T KOG2187|consen 367 AAEVLYSTIGEWA-------GLPADKTLLDVCCGTGTIGLALARGVKRVIGVEISPDAVEDAEKNAQINGIS-------- 431 (534)
T ss_pred HHHHHHHHHHHHh-------CCCCCcEEEEEeecCCceehhhhccccceeeeecChhhcchhhhcchhcCcc--------
Confidence 4788888888873 4556789999999999999999999889999998 78999999999999964
Q ss_pred CCCCCceEEEEeecCCCccccccC--CCccEEEEeccccCccCHHHHHHHHHHhcCCCeEEEEEEEEcC
Q 027530 120 GNLLGSIQAVELDWGNEDHIKAVA--PPFDYIIGTDVVYAEHLLEPLLQTIFALSGPKTTILLGYEIRS 186 (222)
Q Consensus 120 ~~~~~~v~~~~~d~~~~~~~~~~~--~~fD~Ii~~d~~y~~~~~~~ll~~~~~~l~~~g~~~l~~~~r~ 186 (222)
+.+++.+...+........ ..-+++.-.|+-- ......+++.+...-++.-.+|++...+.
T Consensus 432 -----Na~Fi~gqaE~~~~sl~~~~~~~~~~v~iiDPpR-~Glh~~~ik~l~~~~~~~rlvyvSCn~~t 494 (534)
T KOG2187|consen 432 -----NATFIVGQAEDLFPSLLTPCCDSETLVAIIDPPR-KGLHMKVIKALRAYKNPRRLVYVSCNPHT 494 (534)
T ss_pred -----ceeeeecchhhccchhcccCCCCCceEEEECCCc-ccccHHHHHHHHhccCccceEEEEcCHHH
Confidence 7888875333332211111 2344443333332 66778899999998889999999987764
No 185
>PRK11783 rlmL 23S rRNA m(2)G2445 methyltransferase; Provisional
Probab=98.65 E-value=1e-06 Score=82.00 Aligned_cols=151 Identities=13% Similarity=0.018 Sum_probs=98.9
Q ss_pred eEEEeEcCeEEEEeeCCCCcccccc-------ccchHHHHHHHHhhhccCCCCCCCC-CCCCeEEEeCCCccHHHHHHHH
Q 027530 13 VINLEVLGHQLQFSQDPNSKHLGTT-------VWDASVVFVKYLEKNCRKGRFCPSK-LKGKRVIELGAGCGVAGFGMAL 84 (222)
Q Consensus 13 ~~~~~~~~~~~~i~q~~~~~~~g~~-------~W~~~~~la~~l~~~~~~~~~~~~~-~~~~~vLelGcG~G~~~i~la~ 84 (222)
.+.+.+.+...++.-+..+...--+ .-|-...||.-+... ... ..+..++|-+||+|.+.|.+|.
T Consensus 138 ~i~~~~~~~~~~l~ld~sg~~L~rRgyr~~~~~Apl~etlAaa~l~~-------a~w~~~~~~l~DP~CGSGTilIEAa~ 210 (702)
T PRK11783 138 RINARLNKGEATISLDLSGESLHQRGYRQATGEAPLKENLAAAILLR-------SGWPQEGTPLLDPMCGSGTLLIEAAM 210 (702)
T ss_pred EEEEEEeCCEEEEEEECCCCchhhccCccCCCCCCCcHHHHHHHHHH-------cCCCCCCCeEEccCCCccHHHHHHHH
Confidence 5666677888888777643322111 222334666655543 222 3567899999999999998875
Q ss_pred hC--------------------------------------------CEEEEecc-hhhHHHHHHHHHHhhccccccCCCC
Q 027530 85 LG--------------------------------------------CNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGS 119 (222)
Q Consensus 85 ~g--------------------------------------------~~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~ 119 (222)
.+ .+++|+|+ +++++.+++|+..+++.
T Consensus 211 ~~~~~~pg~~r~~f~f~~~~~~~~~~w~~~~~~a~~~~~~~~~~~~~~i~G~Did~~av~~A~~N~~~~g~~-------- 282 (702)
T PRK11783 211 MAADIAPGLHRERWGFSGWLGHDEALWQELLEEAQERARAGLAELPSKFYGSDIDPRVIQAARKNARRAGVA-------- 282 (702)
T ss_pred HHhcCCCCccccccccccCCCCCHHHHHHHHHHHHHHHhhcccccCceEEEEECCHHHHHHHHHHHHHcCCC--------
Confidence 31 25899999 66999999999998853
Q ss_pred CCCCCceEEEEeecCCCccccccCCCccEEEEeccccCc----cCHHHHHHHHHHhcC---CCeEEEEEEE
Q 027530 120 GNLLGSIQAVELDWGNEDHIKAVAPPFDYIIGTDVVYAE----HLLEPLLQTIFALSG---PKTTILLGYE 183 (222)
Q Consensus 120 ~~~~~~v~~~~~d~~~~~~~~~~~~~fD~Ii~~d~~y~~----~~~~~ll~~~~~~l~---~~g~~~l~~~ 183 (222)
..+.+.+.|+.+.... ...++||+|++|+++... .....+.+.+.+.++ +|+.+++...
T Consensus 283 ----~~i~~~~~D~~~~~~~-~~~~~~d~IvtNPPYg~r~~~~~~l~~lY~~lg~~lk~~~~g~~~~llt~ 348 (702)
T PRK11783 283 ----ELITFEVKDVADLKNP-LPKGPTGLVISNPPYGERLGEEPALIALYSQLGRRLKQQFGGWNAALFSS 348 (702)
T ss_pred ----cceEEEeCChhhcccc-cccCCCCEEEECCCCcCccCchHHHHHHHHHHHHHHHHhCCCCeEEEEeC
Confidence 4678888777654221 123579999999887542 223445444444443 7888777654
No 186
>COG0357 GidB Predicted S-adenosylmethionine-dependent methyltransferase involved in bacterial cell division [Cell envelope biogenesis, outer membrane]
Probab=98.62 E-value=3.3e-07 Score=72.78 Aligned_cols=126 Identities=16% Similarity=0.123 Sum_probs=81.1
Q ss_pred CCeEEEeCCCccHHHHHHHHhCC--EEEEecc-hhhHHHHHHHHHHhhccccccCCCCCCCCCceEEEEeecCCCccccc
Q 027530 65 GKRVIELGAGCGVAGFGMALLGC--NVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSGNLLGSIQAVELDWGNEDHIKA 141 (222)
Q Consensus 65 ~~~vLelGcG~G~~~i~la~~g~--~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~ 141 (222)
+++++|||+|.|++|+.+|.... +||.+|. ..=+..++.-...-++ +++++.+...++...
T Consensus 68 ~~~~~DIGSGaGfPGipLAI~~p~~~vtLles~~Kk~~FL~~~~~eL~L-------------~nv~i~~~RaE~~~~--- 131 (215)
T COG0357 68 AKRVLDIGSGAGFPGIPLAIAFPDLKVTLLESLGKKIAFLREVKKELGL-------------ENVEIVHGRAEEFGQ--- 131 (215)
T ss_pred CCEEEEeCCCCCCchhhHHHhccCCcEEEEccCchHHHHHHHHHHHhCC-------------CCeEEehhhHhhccc---
Confidence 68999999999999999886543 5999996 4455555554444443 367887755444321
Q ss_pred cCCC-ccEEEEeccccCccCHHHHHHHHHHhcCCCeEEEEEEEEcChhHHHHHHHHH-hcCCeEEEecCCCC
Q 027530 142 VAPP-FDYIIGTDVVYAEHLLEPLLQTIFALSGPKTTILLGYEIRSTSVHEQMLQMW-KSNFNVKLVPKAKE 211 (222)
Q Consensus 142 ~~~~-fD~Ii~~d~~y~~~~~~~ll~~~~~~l~~~g~~~l~~~~r~~~~~~~f~~~~-~~~~~v~~v~~~~~ 211 (222)
..+ ||+|.+--+ .....++..+..++++||.++........+...+..... ..++.++.+..-..
T Consensus 132 -~~~~~D~vtsRAv----a~L~~l~e~~~pllk~~g~~~~~k~~~~~~e~~e~~~a~~~~~~~~~~~~~~~~ 198 (215)
T COG0357 132 -EKKQYDVVTSRAV----ASLNVLLELCLPLLKVGGGFLAYKGLAGKDELPEAEKAILPLGGQVEKVFSLTV 198 (215)
T ss_pred -ccccCcEEEeehc----cchHHHHHHHHHhcccCCcchhhhHHhhhhhHHHHHHHHHhhcCcEEEEEEeec
Confidence 123 999998654 367889999999999999865433223333233443333 33566655544433
No 187
>PF09445 Methyltransf_15: RNA cap guanine-N2 methyltransferase; InterPro: IPR019012 RNA cap guanine-N2 methyltransferases such as Schizosaccharomyces pombe (Fission yeast) trimethylguanosine synthase (Tgs1) and Giardia lamblia (Giardia intestinalis) Tgs2, catalyse the methylation step(s) for the conversion of the 7-monomethylguanosine (m(7)G) caps of snRNAs and snoRNAs to a 2,2,7-trimethylguanosine (m(2,2,7)G) cap structure [, , ]. Trimethylguanosine synthase is specific for guanine, and N7 methylation must precede N2 methylation. This enzyme is required for pre-mRNA splicing, pre-rRNA processing and small ribosomal subunit synthesis. As such, this enzyme plays a role in transcriptional regulation. ; GO: 0008168 methyltransferase activity, 0001510 RNA methylation, 0009452 RNA capping; PDB: 3EGI_B 3GDH_A.
Probab=98.62 E-value=9.1e-08 Score=72.75 Aligned_cols=77 Identities=21% Similarity=0.057 Sum_probs=55.2
Q ss_pred eEEEeCCCccHHHHHHHHhCCEEEEecc-hhhHHHHHHHHHHhhccccccCCCCCCCCCceEEEEeecCCCccccccCCC
Q 027530 67 RVIELGAGCGVAGFGMALLGCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSGNLLGSIQAVELDWGNEDHIKAVAPP 145 (222)
Q Consensus 67 ~vLelGcG~G~~~i~la~~g~~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~ 145 (222)
.|+|+.||.|-.++.+|+.+.+|+++|+ +..++.++.|++.-++. .+|.++..||.+..........
T Consensus 2 ~vlD~fcG~GGNtIqFA~~~~~Viaidid~~~~~~a~hNa~vYGv~------------~~I~~i~gD~~~~~~~~~~~~~ 69 (163)
T PF09445_consen 2 TVLDAFCGVGGNTIQFARTFDRVIAIDIDPERLECAKHNAEVYGVA------------DNIDFICGDFFELLKRLKSNKI 69 (163)
T ss_dssp EEEETT-TTSHHHHHHHHTT-EEEEEES-HHHHHHHHHHHHHTT-G------------GGEEEEES-HHHHGGGB-----
T ss_pred EEEEeccCcCHHHHHHHHhCCeEEEEECCHHHHHHHHHHHHHcCCC------------CcEEEEeCCHHHHHhhcccccc
Confidence 6999999999999999999999999999 66999999999988753 6899999888764322111222
Q ss_pred ccEEEEeccc
Q 027530 146 FDYIIGTDVV 155 (222)
Q Consensus 146 fD~Ii~~d~~ 155 (222)
||+|+++++-
T Consensus 70 ~D~vFlSPPW 79 (163)
T PF09445_consen 70 FDVVFLSPPW 79 (163)
T ss_dssp -SEEEE---B
T ss_pred ccEEEECCCC
Confidence 8999988754
No 188
>PF02390 Methyltransf_4: Putative methyltransferase ; InterPro: IPR003358 This entry represents tRNA (guanine-N-7) methyltransferase (2.1.1.33 from EC), which catalyses the formation of N(7)-methylguanine at position 46 (m7G46) in tRNA. Capping of the pre-mRNA 5' end by addition a monomethylated guanosine cap (m(7)G) is an essential and the earliest modification in the biogenesis of mRNA []. The reaction is catalysed by three enzymes: triphosphatase, guanylyltransferase, and tRNA (guanine-N-7) methyltransferase [, ].; GO: 0008176 tRNA (guanine-N7-)-methyltransferase activity, 0006400 tRNA modification; PDB: 3DXZ_A 3DXY_A 3DXX_A 3CKK_A 3P2I_B 3P2K_D 3P2E_A 3MTE_B 3PB3_B 1YZH_B ....
Probab=98.61 E-value=3.4e-07 Score=72.13 Aligned_cols=119 Identities=15% Similarity=0.107 Sum_probs=80.1
Q ss_pred CeEEEeCCCccHHHHHHHHhCC--EEEEecc-hhhHHHHHHHHHHhhccccccCCCCCCCCCceEEEEeecCCCcccccc
Q 027530 66 KRVIELGAGCGVAGFGMALLGC--NVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSGNLLGSIQAVELDWGNEDHIKAV 142 (222)
Q Consensus 66 ~~vLelGcG~G~~~i~la~~g~--~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~ 142 (222)
..+||||||.|-..+.+|+... .++|+|. ...+..+.+.+...++ .|+.+...|.......-..
T Consensus 19 ~l~lEIG~G~G~~l~~~A~~~Pd~n~iGiE~~~~~v~~a~~~~~~~~l-------------~Nv~~~~~da~~~l~~~~~ 85 (195)
T PF02390_consen 19 PLILEIGCGKGEFLIELAKRNPDINFIGIEIRKKRVAKALRKAEKRGL-------------KNVRFLRGDARELLRRLFP 85 (195)
T ss_dssp EEEEEET-TTSHHHHHHHHHSTTSEEEEEES-HHHHHHHHHHHHHHTT-------------SSEEEEES-CTTHHHHHST
T ss_pred CeEEEecCCCCHHHHHHHHHCCCCCEEEEecchHHHHHHHHHHHhhcc-------------cceEEEEccHHHHHhhccc
Confidence 3799999999999999998754 6999998 6688888777777664 5899998776553222233
Q ss_pred CCCccEEEEe--ccccCcc------CHHHHHHHHHHhcCCCeEEEEEEEEcChhHHHHHHHHHhc
Q 027530 143 APPFDYIIGT--DVVYAEH------LLEPLLQTIFALSGPKTTILLGYEIRSTSVHEQMLQMWKS 199 (222)
Q Consensus 143 ~~~fD~Ii~~--d~~y~~~------~~~~ll~~~~~~l~~~g~~~l~~~~r~~~~~~~f~~~~~~ 199 (222)
++++|-|..+ |+-.... .-+.++..+.++|+|||.+++.+-... ..+..++.+..
T Consensus 86 ~~~v~~i~i~FPDPWpK~rH~krRl~~~~fl~~~~~~L~~gG~l~~~TD~~~--y~~~~~~~~~~ 148 (195)
T PF02390_consen 86 PGSVDRIYINFPDPWPKKRHHKRRLVNPEFLELLARVLKPGGELYFATDVEE--YAEWMLEQFEE 148 (195)
T ss_dssp TTSEEEEEEES-----SGGGGGGSTTSHHHHHHHHHHEEEEEEEEEEES-HH--HHHHHHHHHHH
T ss_pred CCchheEEEeCCCCCcccchhhhhcCCchHHHHHHHHcCCCCEEEEEeCCHH--HHHHHHHHHHh
Confidence 5788887654 4422111 246799999999999999988765432 23344444443
No 189
>COG2521 Predicted archaeal methyltransferase [General function prediction only]
Probab=98.61 E-value=2.3e-07 Score=73.52 Aligned_cols=130 Identities=19% Similarity=0.188 Sum_probs=89.9
Q ss_pred CCCCeEEEeCCCccHHHHHHHHhCC-EEEEecc-hhhHHHHHHHHHHhhccccccCCCCCCCCCceEEEEeecCCCcccc
Q 027530 63 LKGKRVIELGAGCGVAGFGMALLGC-NVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSGNLLGSIQAVELDWGNEDHIK 140 (222)
Q Consensus 63 ~~~~~vLelGcG~G~~~i~la~~g~-~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~ 140 (222)
.+|.+|||-+.|.|..++.+++.|| +|+.++. +.++++++-|==..++ ....++++.+|..+.- ..
T Consensus 133 ~~G~rVLDtC~GLGYtAi~a~~rGA~~VitvEkdp~VLeLa~lNPwSr~l-----------~~~~i~iilGD~~e~V-~~ 200 (287)
T COG2521 133 KRGERVLDTCTGLGYTAIEALERGAIHVITVEKDPNVLELAKLNPWSREL-----------FEIAIKIILGDAYEVV-KD 200 (287)
T ss_pred ccCCEeeeeccCccHHHHHHHHcCCcEEEEEeeCCCeEEeeccCCCCccc-----------cccccEEecccHHHHH-hc
Confidence 4789999999999999999999999 7999998 6688887765321111 1124666664433221 23
Q ss_pred ccCCCccEEEEeccccCcc---CHHHHHHHHHHhcCCCeEEEE--EEEE---cChhHHHHHHHHHh-cCCeEE
Q 027530 141 AVAPPFDYIIGTDVVYAEH---LLEPLLQTIFALSGPKTTILL--GYEI---RSTSVHEQMLQMWK-SNFNVK 204 (222)
Q Consensus 141 ~~~~~fD~Ii~~d~~y~~~---~~~~ll~~~~~~l~~~g~~~l--~~~~---r~~~~~~~f~~~~~-~~~~v~ 204 (222)
+.+.+||+||-.++-+... .-..|.+.+.++|+|||.++- ..+. |..+......+.++ -+|.+.
T Consensus 201 ~~D~sfDaIiHDPPRfS~AgeLYseefY~El~RiLkrgGrlFHYvG~Pg~ryrG~d~~~gVa~RLr~vGF~~v 273 (287)
T COG2521 201 FDDESFDAIIHDPPRFSLAGELYSEEFYRELYRILKRGGRLFHYVGNPGKRYRGLDLPKGVAERLRRVGFEVV 273 (287)
T ss_pred CCccccceEeeCCCccchhhhHhHHHHHHHHHHHcCcCCcEEEEeCCCCcccccCChhHHHHHHHHhcCceee
Confidence 4578899999888876533 246699999999999998753 3332 33445555666664 488743
No 190
>PLN02232 ubiquinone biosynthesis methyltransferase
Probab=98.60 E-value=3.8e-07 Score=69.61 Aligned_cols=84 Identities=12% Similarity=-0.011 Sum_probs=63.4
Q ss_pred EEecc-hhhHHHHHHHHHHhhccccccCCCCCCCCCceEEEEeecCCCccccccCCCccEEEEeccccCccCHHHHHHHH
Q 027530 90 ITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSGNLLGSIQAVELDWGNEDHIKAVAPPFDYIIGTDVVYAEHLLEPLLQTI 168 (222)
Q Consensus 90 ~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~fD~Ii~~d~~y~~~~~~~ll~~~ 168 (222)
+|+|. ++|++.++++....... ...++++...|.. .++..+++||+|+++.++.+..+...+++.+
T Consensus 1 ~GvD~S~~ML~~A~~~~~~~~~~----------~~~~i~~~~~d~~---~lp~~~~~fD~v~~~~~l~~~~d~~~~l~ei 67 (160)
T PLN02232 1 MGLDFSSEQLAVAATRQSLKARS----------CYKCIEWIEGDAI---DLPFDDCEFDAVTMGYGLRNVVDRLRAMKEM 67 (160)
T ss_pred CeEcCCHHHHHHHHHhhhccccc----------CCCceEEEEechh---hCCCCCCCeeEEEecchhhcCCCHHHHHHHH
Confidence 47998 56999998766532210 1236788886544 3445577899999999998888899999999
Q ss_pred HHhcCCCeEEEEEEEEcC
Q 027530 169 FALSGPKTTILLGYEIRS 186 (222)
Q Consensus 169 ~~~l~~~g~~~l~~~~r~ 186 (222)
+++|||||.+++......
T Consensus 68 ~rvLkpGG~l~i~d~~~~ 85 (160)
T PLN02232 68 YRVLKPGSRVSILDFNKS 85 (160)
T ss_pred HHHcCcCeEEEEEECCCC
Confidence 999999999988765443
No 191
>PF03291 Pox_MCEL: mRNA capping enzyme; InterPro: IPR004971 This is a family of viral mRNA capping enzymes. The enzyme catalyses the first two reactions in the mRNA cap formation pathway. It is a heterodimer consisting of a large and small subunit. This entry is the large subunit. ; GO: 0006370 mRNA capping; PDB: 3EPP_A 3BGV_C 2VDW_C 1RI5_A 1RI3_A 1RI1_A 1Z3C_A 1RI2_A 2HV9_A 1RI4_A.
Probab=98.60 E-value=3.2e-07 Score=77.83 Aligned_cols=137 Identities=16% Similarity=0.089 Sum_probs=78.7
Q ss_pred ccchHHHHHHHHhhhccCCCCCCCCCCCCeEEEeCCCccHHHHHHHHhCC-EEEEecc-hhhHHHHHHHHHHhhcccccc
Q 027530 38 VWDASVVFVKYLEKNCRKGRFCPSKLKGKRVIELGAGCGVAGFGMALLGC-NVITTDQ-IEVLPLLKRNVEWNTSRISQM 115 (222)
Q Consensus 38 ~W~~~~~la~~l~~~~~~~~~~~~~~~~~~vLelGcG~G~~~i~la~~g~-~v~~~D~-~~~l~~~~~n~~~n~~~~~~~ 115 (222)
-|--+.++..|+... ....++.+|||||||-|---.-....+. .++++|+ .+.++.|++............
T Consensus 43 NwvKs~LI~~~~~~~-------~~~~~~~~VLDl~CGkGGDL~Kw~~~~i~~~vg~Dis~~si~ea~~Ry~~~~~~~~~~ 115 (331)
T PF03291_consen 43 NWVKSVLIQKYAKKV-------KQNRPGLTVLDLCCGKGGDLQKWQKAKIKHYVGIDISEESIEEARERYKQLKKRNNSK 115 (331)
T ss_dssp HHHHHHHHHHHCHCC-------CCTTTT-EEEEET-TTTTTHHHHHHTT-SEEEEEES-HHHHHHHHHHHHHHHTSTT-H
T ss_pred HHHHHHHHHHHHHhh-------hccCCCCeEEEecCCCchhHHHHHhcCCCEEEEEeCCHHHHHHHHHHHHHhccccccc
Confidence 577788888887533 1223778999999998764444454554 6999999 569999988763221100000
Q ss_pred CCCCCCCCCceEEEEeecCCCcc---ccccCCCccEEEEeccccC----ccCHHHHHHHHHHhcCCCeEEEEEEEE
Q 027530 116 NPGSGNLLGSIQAVELDWGNEDH---IKAVAPPFDYIIGTDVVYA----EHLLEPLLQTIFALSGPKTTILLGYEI 184 (222)
Q Consensus 116 ~~~~~~~~~~v~~~~~d~~~~~~---~~~~~~~fD~Ii~~d~~y~----~~~~~~ll~~~~~~l~~~g~~~l~~~~ 184 (222)
.. ...-...+...|-..... ......+||+|=+--.+|. ......+++.+...|+|||.++.+.+.
T Consensus 116 ~~---~~~f~a~f~~~D~f~~~l~~~~~~~~~~FDvVScQFalHY~Fese~~ar~~l~Nvs~~Lk~GG~FIgT~~d 188 (331)
T PF03291_consen 116 QY---RFDFIAEFIAADCFSESLREKLPPRSRKFDVVSCQFALHYAFESEEKARQFLKNVSSLLKPGGYFIGTTPD 188 (331)
T ss_dssp TS---EECCEEEEEESTTCCSHHHCTSSSTTS-EEEEEEES-GGGGGSSHHHHHHHHHHHHHTEEEEEEEEEEEE-
T ss_pred cc---cccchhheeccccccchhhhhccccCCCcceeehHHHHHHhcCCHHHHHHHHHHHHHhcCCCCEEEEEecC
Confidence 00 000122333322221110 1111358999987766654 344666999999999999999887764
No 192
>PF06080 DUF938: Protein of unknown function (DUF938); InterPro: IPR010342 This family consists of several hypothetical proteins from both prokaryotes and eukaryotes. The function of this family is unknown.
Probab=98.57 E-value=5.7e-07 Score=70.60 Aligned_cols=106 Identities=17% Similarity=0.112 Sum_probs=72.9
Q ss_pred eEEEeCCCccHHHHHHHHhCCE--EEEecch-hhHHHHHHHHHHhhccccccCCCCCCCCCceEEEEeecCCCccc----
Q 027530 67 RVIELGAGCGVAGFGMALLGCN--VITTDQI-EVLPLLKRNVEWNTSRISQMNPGSGNLLGSIQAVELDWGNEDHI---- 139 (222)
Q Consensus 67 ~vLelGcG~G~~~i~la~~g~~--v~~~D~~-~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~---- 139 (222)
+|||||||||-=+..+|+.-.. -.-+|.+ +.+..++..+...++.. -..-..+|.......
T Consensus 28 ~vLEiaSGtGqHa~~FA~~lP~l~WqPSD~~~~~~~sI~a~~~~~~~~N------------v~~P~~lDv~~~~w~~~~~ 95 (204)
T PF06080_consen 28 RVLEIASGTGQHAVYFAQALPHLTWQPSDPDDNLRPSIRAWIAEAGLPN------------VRPPLALDVSAPPWPWELP 95 (204)
T ss_pred eEEEEcCCccHHHHHHHHHCCCCEEcCCCCChHHHhhHHHHHHhcCCcc------------cCCCeEeecCCCCCccccc
Confidence 6999999999999988887554 5578884 45566666666655430 111233443332111
Q ss_pred -cccCCCccEEEEeccccC--ccCHHHHHHHHHHhcCCCeEEEEEEEE
Q 027530 140 -KAVAPPFDYIIGTDVVYA--EHLLEPLLQTIFALSGPKTTILLGYEI 184 (222)
Q Consensus 140 -~~~~~~fD~Ii~~d~~y~--~~~~~~ll~~~~~~l~~~g~~~l~~~~ 184 (222)
......||.|++..+++- .+....+++...++|++||.+++-.+.
T Consensus 96 ~~~~~~~~D~i~~~N~lHI~p~~~~~~lf~~a~~~L~~gG~L~~YGPF 143 (204)
T PF06080_consen 96 APLSPESFDAIFCINMLHISPWSAVEGLFAGAARLLKPGGLLFLYGPF 143 (204)
T ss_pred cccCCCCcceeeehhHHHhcCHHHHHHHHHHHHHhCCCCCEEEEeCCc
Confidence 123568999999999875 345677999999999999998876554
No 193
>COG3963 Phospholipid N-methyltransferase [Lipid metabolism]
Probab=98.55 E-value=5.9e-07 Score=67.74 Aligned_cols=121 Identities=13% Similarity=0.111 Sum_probs=84.4
Q ss_pred cccchHHHHHHHHhhhccCCCCCCCCCCCCeEEEeCCCccHHHHHHHHhCC---EEEEecc-hhhHHHHHHHHHHhhccc
Q 027530 37 TVWDASVVFVKYLEKNCRKGRFCPSKLKGKRVIELGAGCGVAGFGMALLGC---NVITTDQ-IEVLPLLKRNVEWNTSRI 112 (222)
Q Consensus 37 ~~W~~~~~la~~l~~~~~~~~~~~~~~~~~~vLelGcG~G~~~i~la~~g~---~v~~~D~-~~~l~~~~~n~~~n~~~~ 112 (222)
.+=|+|..+|+-+.+. -..-.|.-|||+|.|||.++-++...|. .++++++ ++-...+.+...
T Consensus 28 aI~PsSs~lA~~M~s~-------I~pesglpVlElGPGTGV~TkaIL~~gv~~~~L~~iE~~~dF~~~L~~~~p------ 94 (194)
T COG3963 28 AILPSSSILARKMASV-------IDPESGLPVLELGPGTGVITKAILSRGVRPESLTAIEYSPDFVCHLNQLYP------ 94 (194)
T ss_pred eecCCcHHHHHHHHhc-------cCcccCCeeEEEcCCccHhHHHHHhcCCCccceEEEEeCHHHHHHHHHhCC------
Confidence 4557788888887765 2455788999999999999999998876 4999998 666555544322
Q ss_pred cccCCCCCCCCCceEEEEeecCCCc--cccccCCCccEEEEeccccCccC--HHHHHHHHHHhcCCCeEEEEEE
Q 027530 113 SQMNPGSGNLLGSIQAVELDWGNED--HIKAVAPPFDYIIGTDVVYAEHL--LEPLLQTIFALSGPKTTILLGY 182 (222)
Q Consensus 113 ~~~~~~~~~~~~~v~~~~~d~~~~~--~~~~~~~~fD~Ii~~d~~y~~~~--~~~ll~~~~~~l~~~g~~~l~~ 182 (222)
.+.++++|..+.. .....++.||.||++=++-+.+. .-.+++.+...|.+||.++.-.
T Consensus 95 ------------~~~ii~gda~~l~~~l~e~~gq~~D~viS~lPll~~P~~~~iaile~~~~rl~~gg~lvqft 156 (194)
T COG3963 95 ------------GVNIINGDAFDLRTTLGEHKGQFFDSVISGLPLLNFPMHRRIAILESLLYRLPAGGPLVQFT 156 (194)
T ss_pred ------------CccccccchhhHHHHHhhcCCCeeeeEEeccccccCcHHHHHHHHHHHHHhcCCCCeEEEEE
Confidence 3345554443333 12234678999999977766444 3457888888899988876443
No 194
>KOG1661 consensus Protein-L-isoaspartate(D-aspartate) O-methyltransferase [Posttranslational modification, protein turnover, chaperones]
Probab=98.52 E-value=1.1e-06 Score=68.56 Aligned_cols=109 Identities=21% Similarity=0.273 Sum_probs=72.5
Q ss_pred CCCCCCeEEEeCCCccHHHHHHHHh-CC---EEEEecc-hhhHHHHHHHHHHhhccccccCCCCCCCCCceEEEEeecCC
Q 027530 61 SKLKGKRVIELGAGCGVAGFGMALL-GC---NVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSGNLLGSIQAVELDWGN 135 (222)
Q Consensus 61 ~~~~~~~vLelGcG~G~~~i~la~~-g~---~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~v~~~~~d~~~ 135 (222)
...+|.+.||+|+|+|.++..++++ |+ .++++|. ++.++..++|++.-...-.. .+.-...++.+.. ++
T Consensus 79 ~L~pG~s~LdvGsGSGYLt~~~~~mvg~~g~~~~GIEh~~eLVe~Sk~nl~k~i~~~e~---~~~~~~~~l~ivv---GD 152 (237)
T KOG1661|consen 79 HLQPGASFLDVGSGSGYLTACFARMVGATGGNVHGIEHIPELVEYSKKNLDKDITTSES---SSKLKRGELSIVV---GD 152 (237)
T ss_pred hhccCcceeecCCCccHHHHHHHHHhcCCCccccchhhhHHHHHHHHHHHHhhccCchh---hhhhccCceEEEe---CC
Confidence 3568899999999999999888854 33 3599997 99999999999865421000 0001123455555 33
Q ss_pred CccccccCCCccEEEEeccccCccCHHHHHHHHHHhcCCCeEEEEE
Q 027530 136 EDHIKAVAPPFDYIIGTDVVYAEHLLEPLLQTIFALSGPKTTILLG 181 (222)
Q Consensus 136 ~~~~~~~~~~fD~Ii~~d~~y~~~~~~~ll~~~~~~l~~~g~~~l~ 181 (222)
-........+||.|.+. .....+.+.+-..|+++|++++-
T Consensus 153 gr~g~~e~a~YDaIhvG------Aaa~~~pq~l~dqL~~gGrllip 192 (237)
T KOG1661|consen 153 GRKGYAEQAPYDAIHVG------AAASELPQELLDQLKPGGRLLIP 192 (237)
T ss_pred ccccCCccCCcceEEEc------cCccccHHHHHHhhccCCeEEEe
Confidence 33333456799999754 23345666666778888888774
No 195
>COG0116 Predicted N6-adenine-specific DNA methylase [DNA replication, recombination, and repair]
Probab=98.49 E-value=5.4e-06 Score=70.78 Aligned_cols=149 Identities=13% Similarity=0.057 Sum_probs=104.1
Q ss_pred eEEEeEcCeEEEEeeCCCCccccccccc-------hHHHHHHHHhhhccCCCCCCCCCCCCeEEEeCCCccHHHHHHHHh
Q 027530 13 VINLEVLGHQLQFSQDPNSKHLGTTVWD-------ASVVFVKYLEKNCRKGRFCPSKLKGKRVIELGAGCGVAGFGMALL 85 (222)
Q Consensus 13 ~~~~~~~~~~~~i~q~~~~~~~g~~~W~-------~~~~la~~l~~~~~~~~~~~~~~~~~~vLelGcG~G~~~i~la~~ 85 (222)
.|.+.+.+..++|.-|.++...-.+-|. --..||.-|..- .....+..++|-=||+|.+.|.+|..
T Consensus 140 ~i~v~l~~~~~~l~iDttG~sLhkRGyR~~~g~ApLketLAaAil~l-------agw~~~~pl~DPmCGSGTi~IEAAl~ 212 (381)
T COG0116 140 RINVELDKDTATLGIDTTGDSLHKRGYRVYDGPAPLKETLAAAILLL-------AGWKPDEPLLDPMCGSGTILIEAALI 212 (381)
T ss_pred EEEEEEEcCEEEEEEeCCCcchhhccccccCCCCCchHHHHHHHHHH-------cCCCCCCccccCCCCccHHHHHHHHh
Confidence 3666778888888888765543333333 123455544433 34555678999999999999999988
Q ss_pred CC-----------------------------------------EEEEecc-hhhHHHHHHHHHHhhccccccCCCCCCCC
Q 027530 86 GC-----------------------------------------NVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSGNLL 123 (222)
Q Consensus 86 g~-----------------------------------------~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~ 123 (222)
+. .+++.|+ +.+++.|+.|++..++.
T Consensus 213 ~~niAPg~~R~~~f~~w~~~~~~lw~~~~~ea~~~a~~~~~~~~~~G~Did~r~i~~Ak~NA~~AGv~------------ 280 (381)
T COG0116 213 AANIAPGLNRRFGFEFWDWFDKDLWDKLREEAEERARRGKELPIIYGSDIDPRHIEGAKANARAAGVG------------ 280 (381)
T ss_pred ccccCCccccccchhhhhhccHHHHHHHHHHHHHHHhhcCccceEEEecCCHHHHHHHHHHHHhcCCC------------
Confidence 74 2779999 66999999999999864
Q ss_pred CceEEEEeecCCCccccccCCCccEEEEeccccC----cc----CHHHHHHHHHHhcCCCeEEEEEEE
Q 027530 124 GSIQAVELDWGNEDHIKAVAPPFDYIIGTDVVYA----EH----LLEPLLQTIFALSGPKTTILLGYE 183 (222)
Q Consensus 124 ~~v~~~~~d~~~~~~~~~~~~~fD~Ii~~d~~y~----~~----~~~~ll~~~~~~l~~~g~~~l~~~ 183 (222)
+.|++.+.|..+.... -+.+|+||+|+++=. .. ....+.+++++.++.-++.+++..
T Consensus 281 d~I~f~~~d~~~l~~~---~~~~gvvI~NPPYGeRlg~~~~v~~LY~~fg~~lk~~~~~ws~~v~tt~ 345 (381)
T COG0116 281 DLIEFKQADATDLKEP---LEEYGVVISNPPYGERLGSEALVAKLYREFGRTLKRLLAGWSRYVFTTS 345 (381)
T ss_pred ceEEEEEcchhhCCCC---CCcCCEEEeCCCcchhcCChhhHHHHHHHHHHHHHHHhcCCceEEEEcc
Confidence 6889999777655432 268999999988622 11 234566667777777677666553
No 196
>PF05971 Methyltransf_10: Protein of unknown function (DUF890); InterPro: IPR010286 This family consists of several conserved hypothetical proteins from both eukaryotes and prokaryotes. The function of members of this family are unknown but are predicted to be SAM-dependent methyltransferases.; GO: 0008168 methyltransferase activity; PDB: 2H00_A.
Probab=98.47 E-value=1.5e-06 Score=72.23 Aligned_cols=83 Identities=23% Similarity=0.266 Sum_probs=48.3
Q ss_pred CCeEEEeCCCcc-HHHHHHHH-hCCEEEEecc-hhhHHHHHHHHHHh-hccccccCCCCCCCCCceEEEEeecC-CC-cc
Q 027530 65 GKRVIELGAGCG-VAGFGMAL-LGCNVITTDQ-IEVLPLLKRNVEWN-TSRISQMNPGSGNLLGSIQAVELDWG-NE-DH 138 (222)
Q Consensus 65 ~~~vLelGcG~G-~~~i~la~-~g~~v~~~D~-~~~l~~~~~n~~~n-~~~~~~~~~~~~~~~~~v~~~~~d~~-~~-~~ 138 (222)
..++||||+|.. +..+..++ .|-+++|||+ +.+++.|++|++.| .+ .++|++....=. .. ..
T Consensus 103 ~v~glDIGTGAscIYpLLg~~~~~W~fvaTdID~~sl~~A~~nv~~N~~L------------~~~I~l~~~~~~~~i~~~ 170 (299)
T PF05971_consen 103 KVRGLDIGTGASCIYPLLGAKLYGWSFVATDIDPKSLESARENVERNPNL------------ESRIELRKQKNPDNIFDG 170 (299)
T ss_dssp --EEEEES-TTTTHHHHHHHHHH--EEEEEES-HHHHHHHHHHHHHT-T-------------TTTEEEEE--ST-SSTTT
T ss_pred ceEeecCCccHHHHHHHHhhhhcCCeEEEecCCHHHHHHHHHHHHhcccc------------ccceEEEEcCCccccchh
Confidence 468999999984 55666554 4778999999 56999999999999 64 367777653311 11 11
Q ss_pred ccccCCCccEEEEeccccCcc
Q 027530 139 IKAVAPPFDYIIGTDVVYAEH 159 (222)
Q Consensus 139 ~~~~~~~fD~Ii~~d~~y~~~ 159 (222)
.....+.||+.+|++++|...
T Consensus 171 i~~~~e~~dftmCNPPFy~s~ 191 (299)
T PF05971_consen 171 IIQPNERFDFTMCNPPFYSSQ 191 (299)
T ss_dssp STT--S-EEEEEE-----SS-
T ss_pred hhcccceeeEEecCCccccCh
Confidence 122346899999999999754
No 197
>COG0220 Predicted S-adenosylmethionine-dependent methyltransferase [General function prediction only]
Probab=98.45 E-value=1.6e-06 Score=69.64 Aligned_cols=107 Identities=12% Similarity=0.001 Sum_probs=77.9
Q ss_pred CeEEEeCCCccHHHHHHHHhCCE--EEEecc-hhhHHHHHHHHHHhhccccccCCCCCCCCCceEEEEeecCCCcccccc
Q 027530 66 KRVIELGAGCGVAGFGMALLGCN--VITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSGNLLGSIQAVELDWGNEDHIKAV 142 (222)
Q Consensus 66 ~~vLelGcG~G~~~i~la~~g~~--v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~ 142 (222)
..+||||||.|-.-+.+|+...+ ++|+|+ ...+..+.+.+.+.++ .|+.+.+.|.......-..
T Consensus 50 pi~lEIGfG~G~~l~~~A~~nP~~nfiGiEi~~~~v~~~l~k~~~~~l-------------~Nlri~~~DA~~~l~~~~~ 116 (227)
T COG0220 50 PIVLEIGFGMGEFLVEMAKKNPEKNFLGIEIRVPGVAKALKKIKELGL-------------KNLRLLCGDAVEVLDYLIP 116 (227)
T ss_pred cEEEEECCCCCHHHHHHHHHCCCCCEEEEEEehHHHHHHHHHHHHcCC-------------CcEEEEcCCHHHHHHhcCC
Confidence 47999999999999999998774 999998 6677777777776653 2778887665544333334
Q ss_pred CCCccEEEEe--ccccCcc------CHHHHHHHHHHhcCCCeEEEEEEEEc
Q 027530 143 APPFDYIIGT--DVVYAEH------LLEPLLQTIFALSGPKTTILLGYEIR 185 (222)
Q Consensus 143 ~~~fD~Ii~~--d~~y~~~------~~~~ll~~~~~~l~~~g~~~l~~~~r 185 (222)
+++.|-|..+ |+=.-.. ..+.+++.+.+.|+|||.+++++-..
T Consensus 117 ~~sl~~I~i~FPDPWpKkRH~KRRl~~~~fl~~~a~~Lk~gG~l~~aTD~~ 167 (227)
T COG0220 117 DGSLDKIYINFPDPWPKKRHHKRRLTQPEFLKLYARKLKPGGVLHFATDNE 167 (227)
T ss_pred CCCeeEEEEECCCCCCCccccccccCCHHHHHHHHHHccCCCEEEEEecCH
Confidence 5588887654 3321111 24679999999999999999987543
No 198
>PF01861 DUF43: Protein of unknown function DUF43; InterPro: IPR002723 This family of prokaryotic proteins have not been characterised. All the members are 350-400 amino acids long.; PDB: 2QM3_A.
Probab=98.42 E-value=2.5e-05 Score=62.73 Aligned_cols=151 Identities=17% Similarity=0.220 Sum_probs=90.6
Q ss_pred ccccccccchHHHHHHHHhhhccCCCCCCCCCCCCeEEEeCCCccHHHHHHHHh--CCEEEEecchh-hHHHHHHHHHHh
Q 027530 32 KHLGTTVWDASVVFVKYLEKNCRKGRFCPSKLKGKRVIELGAGCGVAGFGMALL--GCNVITTDQIE-VLPLLKRNVEWN 108 (222)
Q Consensus 32 ~~~g~~~W~~~~~la~~l~~~~~~~~~~~~~~~~~~vLelGcG~G~~~i~la~~--g~~v~~~D~~~-~l~~~~~n~~~n 108 (222)
.+-+..+++++..=|.|+.++ .++.|++||=||=. =+.|+++|.. ..+|+.+|+++ +++..++.+++.
T Consensus 20 ~DQ~~~T~eT~~~Ra~~~~~~--------gdL~gk~il~lGDD-DLtSlA~al~~~~~~I~VvDiDeRll~fI~~~a~~~ 90 (243)
T PF01861_consen 20 LDQGYATPETTLRRAALMAER--------GDLEGKRILFLGDD-DLTSLALALTGLPKRITVVDIDERLLDFINRVAEEE 90 (243)
T ss_dssp GT---B-HHHHHHHHHHHHHT--------T-STT-EEEEES-T-T-HHHHHHHHT--SEEEEE-S-HHHHHHHHHHHHHH
T ss_pred cccccccHHHHHHHHHHHHhc--------CcccCCEEEEEcCC-cHHHHHHHhhCCCCeEEEEEcCHHHHHHHHHHHHHc
Confidence 455666777888888888876 67899999999844 4667766654 45799999965 999999999888
Q ss_pred hccccccCCCCCCCCCceEEEEeecCCCccccccCCCccEEEEeccccCccCHHHHHHHHHHhcCCC-eEEEEEEEEcCh
Q 027530 109 TSRISQMNPGSGNLLGSIQAVELDWGNEDHIKAVAPPFDYIIGTDVVYAEHLLEPLLQTIFALSGPK-TTILLGYEIRST 187 (222)
Q Consensus 109 ~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~fD~Ii~~d~~y~~~~~~~ll~~~~~~l~~~-g~~~l~~~~r~~ 187 (222)
++ .+++...|..+... ....++||+++. |+.|-.+.+.-++......|+.. +..|++...+..
T Consensus 91 gl--------------~i~~~~~DlR~~LP-~~~~~~fD~f~T-DPPyT~~G~~LFlsRgi~~Lk~~g~~gy~~~~~~~~ 154 (243)
T PF01861_consen 91 GL--------------PIEAVHYDLRDPLP-EELRGKFDVFFT-DPPYTPEGLKLFLSRGIEALKGEGCAGYFGFTHKEA 154 (243)
T ss_dssp T----------------EEEE---TTS----TTTSS-BSEEEE----SSHHHHHHHHHHHHHTB-STT-EEEEEE-TTT-
T ss_pred CC--------------ceEEEEecccccCC-HHHhcCCCEEEe-CCCCCHHHHHHHHHHHHHHhCCCCceEEEEEecCcC
Confidence 74 47888878775432 223679999995 56677777888888888888754 488888877663
Q ss_pred --hHHHHHHHHH-hcCCeEEEec
Q 027530 188 --SVHEQMLQMW-KSNFNVKLVP 207 (222)
Q Consensus 188 --~~~~~f~~~~-~~~~~v~~v~ 207 (222)
....++.+.+ ..++.++.+-
T Consensus 155 s~~~~~~~Q~~l~~~gl~i~dii 177 (243)
T PF01861_consen 155 SPDKWLEVQRFLLEMGLVITDII 177 (243)
T ss_dssp -HHHHHHHHHHHHTS--EEEEEE
T ss_pred cHHHHHHHHHHHHHCCcCHHHHH
Confidence 2233445544 4578776553
No 199
>PF02384 N6_Mtase: N-6 DNA Methylase; InterPro: IPR003356 This domain is fpound in N-6 adenine-specific DNA methylase (2.1.1.72 from EC) from Type I and Type IC restriction systems. These enzymes are responsible for the methylation of specific DNA sequences in order to prevent the host from digesting its own genome via its restriction enzymes. These methylases have the same sequence specificity as their corresponding restriction enzymes. The type I restriction and modification system is composed of three polypeptides R, M and S. The M and S subunits together form a methyltransferase that methylates two adenine residues in complementary strands of a bipartite DNA recognition sequence. In the presence of the R subunit, the complex can also act as an endonuclease, binding to the same target sequence but cutting the DNA some distance from this site. Whether the DNA is cut or modified depends on the methylation state of the target sequence. When the target site is unmodified, the DNA is cut. When the target site is hemimethylated, the complex acts as a maintenance methyltransferase, modifying the DNA so that both strands become methylated.; GO: 0003677 DNA binding, 0008170 N-methyltransferase activity, 0006306 DNA methylation; PDB: 2F8L_A 2Y7C_C 2Y7H_C 2AR0_B 3KHK_A 3LKD_A 2OKC_B.
Probab=98.41 E-value=4.3e-06 Score=70.47 Aligned_cols=123 Identities=18% Similarity=0.143 Sum_probs=76.1
Q ss_pred HHHHHHHhhhccCCCCCCCCCCCCeEEEeCCCccHHHHHHHH---------hCCEEEEecc-hhhHHHHHHHHHHhhccc
Q 027530 43 VVFVKYLEKNCRKGRFCPSKLKGKRVIELGAGCGVAGFGMAL---------LGCNVITTDQ-IEVLPLLKRNVEWNTSRI 112 (222)
Q Consensus 43 ~~la~~l~~~~~~~~~~~~~~~~~~vLelGcG~G~~~i~la~---------~g~~v~~~D~-~~~l~~~~~n~~~n~~~~ 112 (222)
..+++++.... ....+.+|+|-+||+|..-+.+.+ ...+++|.|+ +.++..++.|+..++..
T Consensus 32 ~~i~~l~~~~~-------~~~~~~~VlDPacGsG~fL~~~~~~i~~~~~~~~~~~i~G~ei~~~~~~la~~nl~l~~~~- 103 (311)
T PF02384_consen 32 REIVDLMVKLL-------NPKKGDSVLDPACGSGGFLVAAMEYIKEKRNKIKEINIYGIEIDPEAVALAKLNLLLHGID- 103 (311)
T ss_dssp HHHHHHHHHHH-------TT-TTEEEEETT-TTSHHHHHHHHHHHTCHHHHCCEEEEEEES-HHHHHHHHHHHHHTTHH-
T ss_pred HHHHHHHHhhh-------hccccceeechhhhHHHHHHHHHHhhcccccccccceeEeecCcHHHHHHHHhhhhhhccc-
Confidence 45555555442 234667899999999987777665 2447999999 56999999998877643
Q ss_pred cccCCCCCCCCCceEEEEeecCCCccccccCCCccEEEEeccccCc--c-------------------CHHHHHHHHHHh
Q 027530 113 SQMNPGSGNLLGSIQAVELDWGNEDHIKAVAPPFDYIIGTDVVYAE--H-------------------LLEPLLQTIFAL 171 (222)
Q Consensus 113 ~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~fD~Ii~~d~~y~~--~-------------------~~~~ll~~~~~~ 171 (222)
.....+...|.-..... ....+||+||+++|+-.. . .--.++..+.+.
T Consensus 104 ----------~~~~~i~~~d~l~~~~~-~~~~~~D~ii~NPPf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Fi~~~l~~ 172 (311)
T PF02384_consen 104 ----------NSNINIIQGDSLENDKF-IKNQKFDVIIGNPPFGSKEWKDEELEKDERFKKYFPPKSNAEYAFIEHALSL 172 (311)
T ss_dssp ----------CBGCEEEES-TTTSHSC-TST--EEEEEEE--CTCES-STGGGCTTCCCTTCSSSTTEHHHHHHHHHHHT
T ss_pred ----------ccccccccccccccccc-ccccccccccCCCCccccccccccccccccccccCCCccchhhhhHHHHHhh
Confidence 12334555343221111 124689999999987432 0 012377778888
Q ss_pred cCCCeEEEEEEEE
Q 027530 172 SGPKTTILLGYEI 184 (222)
Q Consensus 172 l~~~g~~~l~~~~ 184 (222)
|+++|++.+..+.
T Consensus 173 Lk~~G~~~~Ilp~ 185 (311)
T PF02384_consen 173 LKPGGRAAIILPN 185 (311)
T ss_dssp EEEEEEEEEEEEH
T ss_pred cccccceeEEecc
Confidence 9999998777764
No 200
>PF05148 Methyltransf_8: Hypothetical methyltransferase; InterPro: IPR007823 This family consists of uncharacterised eukaryotic proteins which are related to S-adenosyl-L-methionine-dependent methyltransferases.; GO: 0008168 methyltransferase activity; PDB: 2ZFU_B.
Probab=98.36 E-value=7.1e-06 Score=64.43 Aligned_cols=126 Identities=13% Similarity=0.145 Sum_probs=75.8
Q ss_pred cccchHH--HHHHHHhhhccCCCCCCCCCCCCeEEEeCCCccHHHHHHHHhCCEEEEecc-hhhHHHHHHHHHHhhcccc
Q 027530 37 TVWDASV--VFVKYLEKNCRKGRFCPSKLKGKRVIELGAGCGVAGFGMALLGCNVITTDQ-IEVLPLLKRNVEWNTSRIS 113 (222)
Q Consensus 37 ~~W~~~~--~la~~l~~~~~~~~~~~~~~~~~~vLelGcG~G~~~i~la~~g~~v~~~D~-~~~l~~~~~n~~~n~~~~~ 113 (222)
..||.-+ .+.+||... ..+..|-|+|||-+.++..+ ..+.+|...|+ +. |
T Consensus 53 ~~WP~nPvd~iI~~l~~~----------~~~~viaD~GCGdA~la~~~-~~~~~V~SfDLva~-----------n----- 105 (219)
T PF05148_consen 53 KKWPVNPVDVIIEWLKKR----------PKSLVIADFGCGDAKLAKAV-PNKHKVHSFDLVAP-----------N----- 105 (219)
T ss_dssp CTSSS-HHHHHHHHHCTS-----------TTS-EEEES-TT-HHHHH---S---EEEEESS-S-----------S-----
T ss_pred hcCCCCcHHHHHHHHHhc----------CCCEEEEECCCchHHHHHhc-ccCceEEEeeccCC-----------C-----
Confidence 3788665 466777543 23468999999999888443 24557999996 32 1
Q ss_pred ccCCCCCCCCCceEEEEeecCCCccccccCCCccEEEEeccccCccCHHHHHHHHHHhcCCCeEEEEEEEEcChhHHHHH
Q 027530 114 QMNPGSGNLLGSIQAVELDWGNEDHIKAVAPPFDYIIGTDVVYAEHLLEPLLQTIFALSGPKTTILLGYEIRSTSVHEQM 193 (222)
Q Consensus 114 ~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~fD~Ii~~d~~y~~~~~~~ll~~~~~~l~~~g~~~l~~~~r~~~~~~~f 193 (222)
+ .+...|. ...|..++..|++|.+=.+. ..++..+++...|+|||||.++|+...-.-.....|
T Consensus 106 ----------~--~Vtacdi---a~vPL~~~svDv~VfcLSLM-GTn~~~fi~EA~RvLK~~G~L~IAEV~SRf~~~~~F 169 (219)
T PF05148_consen 106 ----------P--RVTACDI---ANVPLEDESVDVAVFCLSLM-GTNWPDFIREANRVLKPGGILKIAEVKSRFENVKQF 169 (219)
T ss_dssp ----------T--TEEES-T---TS-S--TT-EEEEEEES----SS-HHHHHHHHHHHEEEEEEEEEEEEGGG-S-HHHH
T ss_pred ----------C--CEEEecC---ccCcCCCCceeEEEEEhhhh-CCCcHHHHHHHHheeccCcEEEEEEecccCcCHHHH
Confidence 1 1233333 23344578999999886553 567889999999999999999998875443446889
Q ss_pred HHHHhc-CCeEEE
Q 027530 194 LQMWKS-NFNVKL 205 (222)
Q Consensus 194 ~~~~~~-~~~v~~ 205 (222)
.+.++. ||.+..
T Consensus 170 ~~~~~~~GF~~~~ 182 (219)
T PF05148_consen 170 IKALKKLGFKLKS 182 (219)
T ss_dssp HHHHHCTTEEEEE
T ss_pred HHHHHHCCCeEEe
Confidence 888864 887765
No 201
>PLN02823 spermine synthase
Probab=98.36 E-value=5.9e-06 Score=70.28 Aligned_cols=125 Identities=16% Similarity=0.197 Sum_probs=79.7
Q ss_pred CCCeEEEeCCCccHHHHHHHHhC--CEEEEecc-hhhHHHHHHHHHHhhccccccCCCCCCCCCceEEEEeecCCCcccc
Q 027530 64 KGKRVIELGAGCGVAGFGMALLG--CNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSGNLLGSIQAVELDWGNEDHIK 140 (222)
Q Consensus 64 ~~~~vLelGcG~G~~~i~la~~g--~~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~ 140 (222)
..++||.||+|.|.....+.+.. .+|+++|+ +++++.+++.+..+...+ ...++++...|-... +.
T Consensus 103 ~pk~VLiiGgG~G~~~re~l~~~~~~~v~~VEiD~~vv~lar~~~~~~~~~~---------~dprv~v~~~Da~~~--L~ 171 (336)
T PLN02823 103 NPKTVFIMGGGEGSTAREVLRHKTVEKVVMCDIDQEVVDFCRKHLTVNREAF---------CDKRLELIINDARAE--LE 171 (336)
T ss_pred CCCEEEEECCCchHHHHHHHhCCCCCeEEEEECCHHHHHHHHHhcccccccc---------cCCceEEEEChhHHH--Hh
Confidence 34689999999999888777753 36999999 679999999876543110 134777776443322 12
Q ss_pred ccCCCccEEEEeccccCc-----c---CHHHHHH-HHHHhcCCCeEEEEEEEE----cChhHHHHHHHHHhcCC
Q 027530 141 AVAPPFDYIIGTDVVYAE-----H---LLEPLLQ-TIFALSGPKTTILLGYEI----RSTSVHEQMLQMWKSNF 201 (222)
Q Consensus 141 ~~~~~fD~Ii~~d~~y~~-----~---~~~~ll~-~~~~~l~~~g~~~l~~~~----r~~~~~~~f~~~~~~~~ 201 (222)
...++||+|+.. +. .. . .-..+++ .+++.|+|+|++++-... ..........+.++..|
T Consensus 172 ~~~~~yDvIi~D-~~-dp~~~~~~~~Lyt~eF~~~~~~~~L~p~Gvlv~q~~s~~~~~~~~~~~~i~~tl~~vF 243 (336)
T PLN02823 172 KRDEKFDVIIGD-LA-DPVEGGPCYQLYTKSFYERIVKPKLNPGGIFVTQAGPAGILTHKEVFSSIYNTLRQVF 243 (336)
T ss_pred hCCCCccEEEec-CC-CccccCcchhhccHHHHHHHHHHhcCCCcEEEEeccCcchhccHHHHHHHHHHHHHhC
Confidence 235789999964 22 11 0 1235777 889999999987654321 12223344455555554
No 202
>PF12147 Methyltransf_20: Putative methyltransferase; InterPro: IPR022744 This C-terminal region is found in bacteria and eukaryotes and is approximately 110 amino acids in length. It is found in association with PF00561 from PFAM. Many members are annotated as being lysophospholipases, and others as alpha-beta hydrolase fold-containing proteins. This domain belongs to the S-adenosyl-L-methionine-dependent methyltransferases superfamily.
Probab=98.33 E-value=1.2e-05 Score=66.14 Aligned_cols=113 Identities=11% Similarity=-0.002 Sum_probs=89.0
Q ss_pred CCCeEEEeCCCccHHHHHHHHhC----CEEEEecc-hhhHHHHHHHHHHhhccccccCCCCCCCCCceEEEEeecCCCcc
Q 027530 64 KGKRVIELGAGCGVAGFGMALLG----CNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSGNLLGSIQAVELDWGNEDH 138 (222)
Q Consensus 64 ~~~~vLelGcG~G~~~i~la~~g----~~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~ 138 (222)
+.-+||||.||.|..-+-+.... .+|...|+ +..++..++-++.+++. +.+++.+.|..+...
T Consensus 135 ~pvrIlDIAaG~GRYvlDal~~~~~~~~~i~LrDys~~Nv~~g~~li~~~gL~------------~i~~f~~~dAfd~~~ 202 (311)
T PF12147_consen 135 RPVRILDIAAGHGRYVLDALEKHPERPDSILLRDYSPINVEKGRALIAERGLE------------DIARFEQGDAFDRDS 202 (311)
T ss_pred CceEEEEeccCCcHHHHHHHHhCCCCCceEEEEeCCHHHHHHHHHHHHHcCCc------------cceEEEecCCCCHhH
Confidence 34589999999998877655442 25999999 55999999999988864 455999988777666
Q ss_pred ccccCCCccEEEEeccccCccC---HHHHHHHHHHhcCCCeEEEEEEEEcChh
Q 027530 139 IKAVAPPFDYIIGTDVVYAEHL---LEPLLQTIFALSGPKTTILLGYEIRSTS 188 (222)
Q Consensus 139 ~~~~~~~fD~Ii~~d~~y~~~~---~~~ll~~~~~~l~~~g~~~l~~~~r~~~ 188 (222)
.......++++|.+.++-..++ +...++-+..++.|||.++.+.++.++.
T Consensus 203 l~~l~p~P~l~iVsGL~ElF~Dn~lv~~sl~gl~~al~pgG~lIyTgQPwHPQ 255 (311)
T PF12147_consen 203 LAALDPAPTLAIVSGLYELFPDNDLVRRSLAGLARALEPGGYLIYTGQPWHPQ 255 (311)
T ss_pred hhccCCCCCEEEEecchhhCCcHHHHHHHHHHHHHHhCCCcEEEEcCCCCCcc
Confidence 6666788999999988754433 5667888888999999999988777775
No 203
>KOG1975 consensus mRNA cap methyltransferase [RNA processing and modification]
Probab=98.31 E-value=3.5e-06 Score=69.90 Aligned_cols=114 Identities=17% Similarity=0.147 Sum_probs=70.9
Q ss_pred CCCeEEEeCCCccHHHHHHHHhCC-EEEEecchh-hHHHHHHHHHHhhccccccCCCCCCCCCceEEEEeecCCCc---c
Q 027530 64 KGKRVIELGAGCGVAGFGMALLGC-NVITTDQIE-VLPLLKRNVEWNTSRISQMNPGSGNLLGSIQAVELDWGNED---H 138 (222)
Q Consensus 64 ~~~~vLelGcG~G~~~i~la~~g~-~v~~~D~~~-~l~~~~~n~~~n~~~~~~~~~~~~~~~~~v~~~~~d~~~~~---~ 138 (222)
++..+++||||-|---+-.-+.|. .++++|+.+ .++.|++..+.-..... ...=.+.+...|-.... .
T Consensus 117 ~~~~~~~LgCGKGGDLlKw~kAgI~~~igiDIAevSI~qa~~RYrdm~~r~~-------~~~f~a~f~~~Dc~~~~l~d~ 189 (389)
T KOG1975|consen 117 RGDDVLDLGCGKGGDLLKWDKAGIGEYIGIDIAEVSINQARKRYRDMKNRFK-------KFIFTAVFIAADCFKERLMDL 189 (389)
T ss_pred cccccceeccCCcccHhHhhhhcccceEeeehhhccHHHHHHHHHHHHhhhh-------cccceeEEEEeccchhHHHHh
Confidence 557899999999976666667776 599999977 89999875542211000 00002344443322111 1
Q ss_pred ccccCCCccEEEEeccccC----ccCHHHHHHHHHHhcCCCeEEEEEEEE
Q 027530 139 IKAVAPPFDYIIGTDVVYA----EHLLEPLLQTIFALSGPKTTILLGYEI 184 (222)
Q Consensus 139 ~~~~~~~fD~Ii~~d~~y~----~~~~~~ll~~~~~~l~~~g~~~l~~~~ 184 (222)
.+..+++||+|=+-=++|. .....-+++.+.+.|+|||.++-+.+.
T Consensus 190 ~e~~dp~fDivScQF~~HYaFetee~ar~~l~Nva~~LkpGG~FIgTiPd 239 (389)
T KOG1975|consen 190 LEFKDPRFDIVSCQFAFHYAFETEESARIALRNVAKCLKPGGVFIGTIPD 239 (389)
T ss_pred ccCCCCCcceeeeeeeEeeeeccHHHHHHHHHHHHhhcCCCcEEEEecCc
Confidence 2233556999866544443 234566899999999999998766654
No 204
>PRK10611 chemotaxis methyltransferase CheR; Provisional
Probab=98.28 E-value=4.3e-06 Score=69.53 Aligned_cols=116 Identities=22% Similarity=0.240 Sum_probs=74.6
Q ss_pred CeEEEeCCCccH----HHHHHHHh------CCEEEEecc-hhhHHHHHHHHHH----hhccc-------ccc-CC-----
Q 027530 66 KRVIELGAGCGV----AGFGMALL------GCNVITTDQ-IEVLPLLKRNVEW----NTSRI-------SQM-NP----- 117 (222)
Q Consensus 66 ~~vLelGcG~G~----~~i~la~~------g~~v~~~D~-~~~l~~~~~n~~~----n~~~~-------~~~-~~----- 117 (222)
.+|+-.||.||- +++.+... ..+|+|||+ +.+++.|++.+-. .+++. ... .+
T Consensus 117 irIWSAgCStGEEpYSlAmll~e~~~~~~~~~~I~atDIs~~aL~~Ar~G~Y~~~~~r~~p~~~~~ryF~~~~~~~~~~~ 196 (287)
T PRK10611 117 YRVWSAAASTGEEPYSIAMTLADTLGTAPGRWKVFASDIDTEVLEKARSGIYRQEELKTLSPQQLQRYFMRGTGPHEGLV 196 (287)
T ss_pred EEEEEccccCCHHHHHHHHHHHHhhcccCCCcEEEEEECCHHHHHHHHhCCCCHHHHhcCCHHHHHHHcccccCCCCceE
Confidence 689999999993 33444442 136999999 5599999876311 11110 000 00
Q ss_pred -CCCCCCCceEEEEeecCCCccccccCCCccEEEEeccccC--ccCHHHHHHHHHHhcCCCeEEEEEEE
Q 027530 118 -GSGNLLGSIQAVELDWGNEDHIKAVAPPFDYIIGTDVVYA--EHLLEPLLQTIFALSGPKTTILLGYE 183 (222)
Q Consensus 118 -~~~~~~~~v~~~~~d~~~~~~~~~~~~~fD~Ii~~d~~y~--~~~~~~ll~~~~~~l~~~g~~~l~~~ 183 (222)
.+......|.+..++..+.. ....+.||+|+|..++.+ .+....+++.+.+.|+|||.+++++.
T Consensus 197 ~v~~~lr~~V~F~~~NL~~~~--~~~~~~fD~I~cRNvliyF~~~~~~~vl~~l~~~L~pgG~L~lG~s 263 (287)
T PRK10611 197 RVRQELANYVDFQQLNLLAKQ--WAVPGPFDAIFCRNVMIYFDKTTQERILRRFVPLLKPDGLLFAGHS 263 (287)
T ss_pred EEChHHHccCEEEcccCCCCC--CccCCCcceeeHhhHHhcCCHHHHHHHHHHHHHHhCCCcEEEEeCc
Confidence 00122346777776665421 112478999999777644 35578899999999999999888764
No 205
>COG0030 KsgA Dimethyladenosine transferase (rRNA methylation) [Translation, ribosomal structure and biogenesis]
Probab=98.27 E-value=1.4e-05 Score=65.24 Aligned_cols=80 Identities=14% Similarity=0.074 Sum_probs=60.7
Q ss_pred CCCCCCeEEEeCCCccHHHHHHHHhCCEEEEecch-hhHHHHHHHHHHhhccccccCCCCCCCCCceEEEEeecCCCccc
Q 027530 61 SKLKGKRVIELGAGCGVAGFGMALLGCNVITTDQI-EVLPLLKRNVEWNTSRISQMNPGSGNLLGSIQAVELDWGNEDHI 139 (222)
Q Consensus 61 ~~~~~~~vLelGcG~G~~~i~la~~g~~v~~~D~~-~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~ 139 (222)
...++.+|||||+|.|.++..+++.+.+|++++++ .+++.+++.... ..+++++..|.-..+..
T Consensus 27 ~~~~~d~VlEIGpG~GaLT~~Ll~~~~~v~aiEiD~~l~~~L~~~~~~---------------~~n~~vi~~DaLk~d~~ 91 (259)
T COG0030 27 NISPGDNVLEIGPGLGALTEPLLERAARVTAIEIDRRLAEVLKERFAP---------------YDNLTVINGDALKFDFP 91 (259)
T ss_pred CCCCCCeEEEECCCCCHHHHHHHhhcCeEEEEEeCHHHHHHHHHhccc---------------ccceEEEeCchhcCcch
Confidence 34457899999999999999999999999999995 588888776651 25788888666554321
Q ss_pred cccCCCccEEEEeccccC
Q 027530 140 KAVAPPFDYIIGTDVVYA 157 (222)
Q Consensus 140 ~~~~~~fD~Ii~~d~~y~ 157 (222)
... .++.|++|-++|-
T Consensus 92 ~l~--~~~~vVaNlPY~I 107 (259)
T COG0030 92 SLA--QPYKVVANLPYNI 107 (259)
T ss_pred hhc--CCCEEEEcCCCcc
Confidence 111 7899999977654
No 206
>KOG2940 consensus Predicted methyltransferase [General function prediction only]
Probab=98.27 E-value=8.9e-07 Score=70.15 Aligned_cols=99 Identities=12% Similarity=0.109 Sum_probs=76.5
Q ss_pred CCeEEEeCCCccHHHHHHHHhCC-EEEEecch-hhHHHHHHHHHHhhccccccCCCCCCCCCceEEEEeecCCCcccccc
Q 027530 65 GKRVIELGAGCGVAGFGMALLGC-NVITTDQI-EVLPLLKRNVEWNTSRISQMNPGSGNLLGSIQAVELDWGNEDHIKAV 142 (222)
Q Consensus 65 ~~~vLelGcG~G~~~i~la~~g~-~v~~~D~~-~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~ 142 (222)
...++|||||.|.+.-.+...+. +++.+|.+ .|++.++..-. +. -...... ++.+.+++.
T Consensus 73 fp~a~diGcs~G~v~rhl~~e~vekli~~DtS~~M~~s~~~~qd-p~--------------i~~~~~v---~DEE~Ldf~ 134 (325)
T KOG2940|consen 73 FPTAFDIGCSLGAVKRHLRGEGVEKLIMMDTSYDMIKSCRDAQD-PS--------------IETSYFV---GDEEFLDFK 134 (325)
T ss_pred CcceeecccchhhhhHHHHhcchhheeeeecchHHHHHhhccCC-Cc--------------eEEEEEe---cchhccccc
Confidence 36899999999999887777776 69999985 48887765322 11 1222222 455566677
Q ss_pred CCCccEEEEeccccCccCHHHHHHHHHHhcCCCeEEEEE
Q 027530 143 APPFDYIIGTDVVYAEHLLEPLLQTIFALSGPKTTILLG 181 (222)
Q Consensus 143 ~~~fD~Ii~~d~~y~~~~~~~ll~~~~~~l~~~g~~~l~ 181 (222)
++++|+||++-.++|..+++..+..++..|||.|.++-+
T Consensus 135 ens~DLiisSlslHW~NdLPg~m~~ck~~lKPDg~Fias 173 (325)
T KOG2940|consen 135 ENSVDLIISSLSLHWTNDLPGSMIQCKLALKPDGLFIAS 173 (325)
T ss_pred ccchhhhhhhhhhhhhccCchHHHHHHHhcCCCccchhH
Confidence 899999999999999999999999999999999987644
No 207
>PRK11933 yebU rRNA (cytosine-C(5)-)-methyltransferase RsmF; Reviewed
Probab=98.25 E-value=1.9e-05 Score=70.01 Aligned_cols=105 Identities=17% Similarity=0.218 Sum_probs=71.7
Q ss_pred CCCCeEEEeCCCccHHHHHHHHh-C--CEEEEecc-hhhHHHHHHHHHHhhccccccCCCCCCCCCceEEEEeecCCCcc
Q 027530 63 LKGKRVIELGAGCGVAGFGMALL-G--CNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSGNLLGSIQAVELDWGNEDH 138 (222)
Q Consensus 63 ~~~~~vLelGcG~G~~~i~la~~-g--~~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~ 138 (222)
.+|.+|||++||.|-=+..+|.+ + ..|++.|+ +.-++.+++|+++-++. ++.+...|-....
T Consensus 112 ~pg~~VLD~CAAPGgKTt~la~~l~~~g~lvA~D~~~~R~~~L~~nl~r~G~~-------------nv~v~~~D~~~~~- 177 (470)
T PRK11933 112 NAPQRVLDMAAAPGSKTTQIAALMNNQGAIVANEYSASRVKVLHANISRCGVS-------------NVALTHFDGRVFG- 177 (470)
T ss_pred CCCCEEEEeCCCccHHHHHHHHHcCCCCEEEEEeCCHHHHHHHHHHHHHcCCC-------------eEEEEeCchhhhh-
Confidence 47789999999999888777764 2 36999999 56899999999987743 5666654432211
Q ss_pred ccccCCCccEEEEecc------ccCcc----------------CHHHHHHHHHHhcCCCeEEEEEE
Q 027530 139 IKAVAPPFDYIIGTDV------VYAEH----------------LLEPLLQTIFALSGPKTTILLGY 182 (222)
Q Consensus 139 ~~~~~~~fD~Ii~~d~------~y~~~----------------~~~~ll~~~~~~l~~~g~~~l~~ 182 (222)
......||.|+.--+ +...+ .-..++....++|+|||+++.++
T Consensus 178 -~~~~~~fD~ILvDaPCSG~G~~rk~p~~~~~~s~~~v~~l~~lQ~~iL~~A~~~LkpGG~LVYST 242 (470)
T PRK11933 178 -AALPETFDAILLDAPCSGEGTVRKDPDALKNWSPESNLEIAATQRELIESAFHALKPGGTLVYST 242 (470)
T ss_pred -hhchhhcCeEEEcCCCCCCcccccCHHHhhhCCHHHHHHHHHHHHHHHHHHHHHcCCCcEEEEEC
Confidence 122457999984211 11111 12557888888999999876543
No 208
>TIGR02987 met_A_Alw26 type II restriction m6 adenine DNA methyltransferase, Alw26I/Eco31I/Esp3I family. Members of this family are the m6-adenine DNA methyltransferase protein, or domain of a fusion protein that also carries m5 cytosine methyltransferase activity, of type II restriction systems of the Alw26I/Eco31I/Esp3I family. A methyltransferase of this family is alway accompanied by a type II restriction endonuclease from the Alw26I/Eco31I/Esp3I family (TIGR02986) and by an adenine-specific modification methyltransferase. Members of this family are unusual in that regions of similarity to homologs outside this family are circularly permuted.
Probab=98.24 E-value=2.1e-05 Score=71.13 Aligned_cols=81 Identities=15% Similarity=0.062 Sum_probs=51.8
Q ss_pred CCCeEEEeCCCccHHHHHHHHhC----------CEEEEecc-hhhHHHHHHHHHHhhccccccCCCCCCCCCceEEEEee
Q 027530 64 KGKRVIELGAGCGVAGFGMALLG----------CNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSGNLLGSIQAVELD 132 (222)
Q Consensus 64 ~~~~vLelGcG~G~~~i~la~~g----------~~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~v~~~~~d 132 (222)
.+.+|||.|||+|.+.+.++... .++++.|+ +.++..++.|+...+. ..+.+...+
T Consensus 31 ~~~~ilDP~cGsG~fl~~~~~~~~~~~~~~~~~~~i~g~DId~~a~~~a~~~l~~~~~-------------~~~~i~~~d 97 (524)
T TIGR02987 31 TKTKIIDPCCGDGRLIAALLKKNEEINYFKEVELNIYFADIDKTLLKRAKKLLGEFAL-------------LEINVINFN 97 (524)
T ss_pred cceEEEeCCCCccHHHHHHHHHHHhcCCcccceeeeeeechhHHHHHHHHHHHhhcCC-------------CCceeeecc
Confidence 45689999999999888777532 25899999 5699999999875541 012222211
Q ss_pred cCCCc--cccccCCCccEEEEeccccC
Q 027530 133 WGNED--HIKAVAPPFDYIIGTDVVYA 157 (222)
Q Consensus 133 ~~~~~--~~~~~~~~fD~Ii~~d~~y~ 157 (222)
.-... ......++||+||+|+|+-.
T Consensus 98 ~l~~~~~~~~~~~~~fD~IIgNPPy~~ 124 (524)
T TIGR02987 98 SLSYVLLNIESYLDLFDIVITNPPYGR 124 (524)
T ss_pred cccccccccccccCcccEEEeCCCccc
Confidence 11100 00112358999999999753
No 209
>PF08123 DOT1: Histone methylation protein DOT1 ; InterPro: IPR013110 The DOT1 domain regulates gene expression by methylating histone H3 []. H3 methylation by DOT1 has been shown to be required for the DNA damage checkpoint in yeast [].; GO: 0018024 histone-lysine N-methyltransferase activity; PDB: 4ER3_A 4ER6_A 4EQZ_A 1NW3_A 3UWP_A 4ER5_A 3QOX_A 3SX0_A 4ER7_A 3SR4_A ....
Probab=98.24 E-value=3.1e-06 Score=67.06 Aligned_cols=155 Identities=17% Similarity=0.236 Sum_probs=70.5
Q ss_pred CCCCCeEEEeCCCccHHHHHHH-HhCCE-EEEecc-hhhHHHHHHHHHHhhccccccCCCCCCCCCceEEEEeecCCCcc
Q 027530 62 KLKGKRVIELGAGCGVAGFGMA-LLGCN-VITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSGNLLGSIQAVELDWGNEDH 138 (222)
Q Consensus 62 ~~~~~~vLelGcG~G~~~i~la-~~g~~-v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~ 138 (222)
.-++..++|||||.|-+-+.+| ..+.+ ++|+++ ++..+.++.+.+.......... ....++.+...|..+.+.
T Consensus 40 l~~~dvF~DlGSG~G~~v~~aal~~~~~~~~GIEi~~~~~~~a~~~~~~~~~~~~~~g----~~~~~v~l~~gdfl~~~~ 115 (205)
T PF08123_consen 40 LTPDDVFYDLGSGVGNVVFQAALQTGCKKSVGIEILPELHDLAEELLEELKKRMKHYG----KRPGKVELIHGDFLDPDF 115 (205)
T ss_dssp --TT-EEEEES-TTSHHHHHHHHHH--SEEEEEE-SHHHHHHHHHHHHHHHHHHHHCT----B---EEEEECS-TTTHHH
T ss_pred CCCCCEEEECCCCCCHHHHHHHHHcCCcEEEEEEechHHHHHHHHHHHHHHHHHHHhh----cccccceeeccCccccHh
Confidence 3457799999999998877666 44664 999998 6566666554433211100000 012356666655443221
Q ss_pred ccccCCCccEEEEeccccCccCHHHHHHHHHHhcCCCeEEEEEEEEcChhHHH---HHHHHHhcCCeEEEecCCCCCccc
Q 027530 139 IKAVAPPFDYIIGTDVVYAEHLLEPLLQTIFALSGPKTTILLGYEIRSTSVHE---QMLQMWKSNFNVKLVPKAKESTMW 215 (222)
Q Consensus 139 ~~~~~~~fD~Ii~~d~~y~~~~~~~ll~~~~~~l~~~g~~~l~~~~r~~~~~~---~f~~~~~~~~~v~~v~~~~~~~~~ 215 (222)
....-...|+|+++...|..+....+ ..+...||+|.+++ +...-.+.... .-...+..-+.++.....+..-.|
T Consensus 116 ~~~~~s~AdvVf~Nn~~F~~~l~~~L-~~~~~~lk~G~~II-s~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~vSW 193 (205)
T PF08123_consen 116 VKDIWSDADVVFVNNTCFDPDLNLAL-AELLLELKPGARII-STKPFCPRRRSINSRNLDDIFAILKVEELEYVEGSVSW 193 (205)
T ss_dssp HHHHGHC-SEEEE--TTT-HHHHHHH-HHHHTTS-TT-EEE-ESS-SS-TT----TTSTTSGGGCEEEEEEE--TT-BTT
T ss_pred HhhhhcCCCEEEEeccccCHHHHHHH-HHHHhcCCCCCEEE-ECCCcCCCCcccchhhccChhhEEEEeecccCCCceee
Confidence 11112468999999998876665555 44445578887764 44322221111 001111223556666655555566
Q ss_pred CCCCCCC
Q 027530 216 GNPLGLY 222 (222)
Q Consensus 216 ~~~~~~~ 222 (222)
....|.|
T Consensus 194 t~~~~~y 200 (205)
T PF08123_consen 194 TSNSGPY 200 (205)
T ss_dssp CSSB-EE
T ss_pred cCCCcCE
Confidence 6555543
No 210
>PF01739 CheR: CheR methyltransferase, SAM binding domain; InterPro: IPR022642 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. Flagellated bacteria swim towards favourable chemicals and away from deleterious ones. Sensing of chemoeffector gradients involves chemotaxis receptors, transmembrane (TM) proteins that detect stimuli through their periplasmic domains and transduce the signals via their cytoplasmic domains []. Signalling outputs from these receptors are influenced both by the binding of the chemoeffector ligand to their periplasmic domains and by methylation of specific glutamate residues on their cytoplasmic domains. Methylation is catalysed by CheR, an S-adenosylmethionine-dependent methyltransferase [], which reversibly methylates specific glutamate residues within a coiled coil region, to form gamma-glutamyl methyl ester residues [, ]. The structure of the Salmonella typhimurium chemotaxis receptor methyltransferase CheR, bound to S-adenosylhomocysteine, has been determined to a resolution of 2.0 A []. The structure reveals CheR to be a two-domain protein, with a smaller N-terminal helical domain linked via a single polypeptide connection to a larger C-terminal alpha/beta domain. The C-terminal domain has the characteristics of a nucleotide-binding fold, with an insertion of a small anti-parallel beta-sheet subdomain. The S-adenosylhomocysteine-binding site is formed mainly by the large domain, with contributions from residues within the N-terminal domain and the linker region []. CheR proteins are part of the chemotaxis signaling mechanism which methylates the chemotaxis receptor at specific glutamate residues. This entry refers to the C-terminal SAM-binding domain of the CherR-type MCP methyltransferases, which are found in bacteria, archaea and green plants. This entry is found in association with PF03705 from PFAM. ; PDB: 1AF7_A 1BC5_A.
Probab=98.22 E-value=3e-06 Score=66.74 Aligned_cols=117 Identities=15% Similarity=0.145 Sum_probs=67.5
Q ss_pred CCCeEEEeCCCccH----HHHHHHHh-----C--CEEEEecc-hhhHHHHHHHHH-Hhhc---ccc-------ccCC---
Q 027530 64 KGKRVIELGAGCGV----AGFGMALL-----G--CNVITTDQ-IEVLPLLKRNVE-WNTS---RIS-------QMNP--- 117 (222)
Q Consensus 64 ~~~~vLelGcG~G~----~~i~la~~-----g--~~v~~~D~-~~~l~~~~~n~~-~n~~---~~~-------~~~~--- 117 (222)
+..+|+-.||++|- +++.+... + .+|+|||+ +.+++.|++-+- .+.+ +.. ....
T Consensus 31 ~~lrIWSagCStGeE~YSlAmll~e~~~~~~~~~~~I~atDi~~~~L~~Ar~G~Y~~~~~~~~~~~~~~ryf~~~~~~~~ 110 (196)
T PF01739_consen 31 RPLRIWSAGCSTGEEPYSLAMLLLELLPGALGWDFRILATDISPSALEKARAGIYPERSLRGLPPAYLRRYFTERDGGGY 110 (196)
T ss_dssp S-EEEEETT-TTTHHHHHHHHHHHHHH-S-TT-SEEEEEEES-HHHHHHHHHTEEEGGGGTTS-HHHHHHHEEEE-CCCT
T ss_pred CCeEEEECCCCCChhHHHHHHHHHHHhcccCCCceEEEEEECCHHHHHHHHhCCCCHHHHhhhHHHHHHHhccccCCCce
Confidence 34589999999993 33444441 1 37999999 559998876431 1111 000 0000
Q ss_pred -CCCCCCCceEEEEeecCCCccccccCCCccEEEEeccccC--ccCHHHHHHHHHHhcCCCeEEEEEEE
Q 027530 118 -GSGNLLGSIQAVELDWGNEDHIKAVAPPFDYIIGTDVVYA--EHLLEPLLQTIFALSGPKTTILLGYE 183 (222)
Q Consensus 118 -~~~~~~~~v~~~~~d~~~~~~~~~~~~~fD~Ii~~d~~y~--~~~~~~ll~~~~~~l~~~g~~~l~~~ 183 (222)
.+......|++..++..+ .....+.||+|+|-.++-. ......+++.+.+.|+|||.++++..
T Consensus 111 ~v~~~lr~~V~F~~~NL~~---~~~~~~~fD~I~CRNVlIYF~~~~~~~vl~~l~~~L~pgG~L~lG~s 176 (196)
T PF01739_consen 111 RVKPELRKMVRFRRHNLLD---PDPPFGRFDLIFCRNVLIYFDPETQQRVLRRLHRSLKPGGYLFLGHS 176 (196)
T ss_dssp TE-HHHHTTEEEEE--TT----S------EEEEEE-SSGGGS-HHHHHHHHHHHGGGEEEEEEEEE-TT
T ss_pred eEChHHcCceEEEecccCC---CCcccCCccEEEecCEEEEeCHHHHHHHHHHHHHHcCCCCEEEEecC
Confidence 001233578888887776 2224678999999988743 45567799999999999999998654
No 211
>PRK00536 speE spermidine synthase; Provisional
Probab=98.21 E-value=2.9e-05 Score=63.69 Aligned_cols=118 Identities=8% Similarity=-0.099 Sum_probs=79.2
Q ss_pred CCeEEEeCCCccHHHHHHHHhCCEEEEecc-hhhHHHHHHHHHHhhccccccCCCCCCCCCceEEEEeecCCCccccccC
Q 027530 65 GKRVIELGAGCGVAGFGMALLGCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSGNLLGSIQAVELDWGNEDHIKAVA 143 (222)
Q Consensus 65 ~~~vLelGcG~G~~~i~la~~g~~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~ 143 (222)
-++||=+|.|-|...-.+.+...+|+.+|+ +++++.+++-+......+ ..+++++.. |- .....
T Consensus 73 pk~VLIiGGGDGg~~REvLkh~~~v~mVeID~~Vv~~~k~~lP~~~~~~---------~DpRv~l~~--~~----~~~~~ 137 (262)
T PRK00536 73 LKEVLIVDGFDLELAHQLFKYDTHVDFVQADEKILDSFISFFPHFHEVK---------NNKNFTHAK--QL----LDLDI 137 (262)
T ss_pred CCeEEEEcCCchHHHHHHHCcCCeeEEEECCHHHHHHHHHHCHHHHHhh---------cCCCEEEee--hh----hhccC
Confidence 379999999999999999988669999999 559999998544322111 234666654 21 11123
Q ss_pred CCccEEEEeccccCccCHHHHHHHHHHhcCCCeEEEEEEE--EcChhHHHHHHHHHhcCCe
Q 027530 144 PPFDYIIGTDVVYAEHLLEPLLQTIFALSGPKTTILLGYE--IRSTSVHEQMLQMWKSNFN 202 (222)
Q Consensus 144 ~~fD~Ii~~d~~y~~~~~~~ll~~~~~~l~~~g~~~l~~~--~r~~~~~~~f~~~~~~~~~ 202 (222)
++||+||. |.++. ..+.+.+++.|+|+|.+..... .-.........+.++..|.
T Consensus 138 ~~fDVIIv-Ds~~~----~~fy~~~~~~L~~~Gi~v~Qs~sp~~~~~~~~~i~~~l~~~F~ 193 (262)
T PRK00536 138 KKYDLIIC-LQEPD----IHKIDGLKRMLKEDGVFISVAKHPLLEHVSMQNALKNMGDFFS 193 (262)
T ss_pred CcCCEEEE-cCCCC----hHHHHHHHHhcCCCcEEEECCCCcccCHHHHHHHHHHHHhhCC
Confidence 68999995 54433 5788999999999998766332 2223334455555555665
No 212
>PF04816 DUF633: Family of unknown function (DUF633) ; InterPro: IPR006901 This is a family of uncharacterised bacterial proteins.; GO: 0016429 tRNA (adenine-N1-)-methyltransferase activity; PDB: 3LEC_A 3KU1_G 3KR9_A 3GNL_B.
Probab=98.19 E-value=4.3e-05 Score=60.59 Aligned_cols=116 Identities=16% Similarity=0.104 Sum_probs=73.6
Q ss_pred EEEeCCCccHHHHHHHHhCC--EEEEecc-hhhHHHHHHHHHHhhccccccCCCCCCCCCceEEEEeecCCCccccccCC
Q 027530 68 VIELGAGCGVAGFGMALLGC--NVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSGNLLGSIQAVELDWGNEDHIKAVAP 144 (222)
Q Consensus 68 vLelGcG~G~~~i~la~~g~--~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~ 144 (222)
|.|+||-.|.+++.|.+.|. +++++|+ +.-++.|++|++.+++. .++++...| ....-.+.+
T Consensus 1 vaDIGtDHgyLpi~L~~~~~~~~~ia~DI~~gpL~~A~~~i~~~~l~------------~~i~~rlgd---GL~~l~~~e 65 (205)
T PF04816_consen 1 VADIGTDHGYLPIYLLKNGKAPKAIAVDINPGPLEKAKENIAKYGLE------------DRIEVRLGD---GLEVLKPGE 65 (205)
T ss_dssp EEEET-STTHHHHHHHHTTSEEEEEEEESSHHHHHHHHHHHHHTT-T------------TTEEEEE-S---GGGG--GGG
T ss_pred CceeccchhHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHHcCCc------------ccEEEEECC---cccccCCCC
Confidence 68999999999999999987 6999999 55999999999998753 578887733 222111233
Q ss_pred CccEEEEeccccCccCHHHHHHHHHHhcCCCeEEEEEEEEcChhHHHHHHHHHhcCCeE
Q 027530 145 PFDYIIGTDVVYAEHLLEPLLQTIFALSGPKTTILLGYEIRSTSVHEQMLQMWKSNFNV 203 (222)
Q Consensus 145 ~fD~Ii~~d~~y~~~~~~~ll~~~~~~l~~~g~~~l~~~~r~~~~~~~f~~~~~~~~~v 203 (222)
..|.|+-+.+- ...+..++......++....+++ .+.......+.|+. ..+|.+
T Consensus 66 ~~d~ivIAGMG--G~lI~~ILe~~~~~~~~~~~lIL-qP~~~~~~LR~~L~--~~gf~I 119 (205)
T PF04816_consen 66 DVDTIVIAGMG--GELIIEILEAGPEKLSSAKRLIL-QPNTHAYELRRWLY--ENGFEI 119 (205)
T ss_dssp ---EEEEEEE---HHHHHHHHHHTGGGGTT--EEEE-EESS-HHHHHHHHH--HTTEEE
T ss_pred CCCEEEEecCC--HHHHHHHHHhhHHHhccCCeEEE-eCCCChHHHHHHHH--HCCCEE
Confidence 47888877665 44556666666666665555544 55555544555554 456655
No 213
>COG1352 CheR Methylase of chemotaxis methyl-accepting proteins [Cell motility and secretion / Signal transduction mechanisms]
Probab=98.18 E-value=3.5e-06 Score=69.27 Aligned_cols=120 Identities=16% Similarity=0.131 Sum_probs=76.9
Q ss_pred CCeEEEeCCCccH--HH--HHHHHhC-------CEEEEecch-hhHHHHHHHHHH--h---hcccc-------ccCCC--
Q 027530 65 GKRVIELGAGCGV--AG--FGMALLG-------CNVITTDQI-EVLPLLKRNVEW--N---TSRIS-------QMNPG-- 118 (222)
Q Consensus 65 ~~~vLelGcG~G~--~~--i~la~~g-------~~v~~~D~~-~~l~~~~~n~~~--n---~~~~~-------~~~~~-- 118 (222)
--+|+-.||+||- .+ +.+.... .+|+|||++ .+++.|+.-+-. + +++.. +....
T Consensus 97 ~irIWSaaCStGEEpYSiAm~l~e~~~~~~~~~~~I~AtDId~~~L~~A~~G~Y~~~~~~~~~~~~~~~ryF~~~~~~~y 176 (268)
T COG1352 97 PIRIWSAACSTGEEPYSLAMLLLEALGKLAGFRVKILATDIDLSVLEKARAGIYPSRELLRGLPPELLRRYFERGGDGSY 176 (268)
T ss_pred ceEEEecCcCCCccHHHHHHHHHHHhccccCCceEEEEEECCHHHHHHHhcCCCChhHhhccCCHHHHhhhEeecCCCcE
Confidence 4689999999992 34 4444432 369999995 599998764321 1 11110 00000
Q ss_pred --CCCCCCceEEEEeecCCCccccccCCCccEEEEeccc-cC-ccCHHHHHHHHHHhcCCCeEEEEEEEEcCh
Q 027530 119 --SGNLLGSIQAVELDWGNEDHIKAVAPPFDYIIGTDVV-YA-EHLLEPLLQTIFALSGPKTTILLGYEIRST 187 (222)
Q Consensus 119 --~~~~~~~v~~~~~d~~~~~~~~~~~~~fD~Ii~~d~~-y~-~~~~~~ll~~~~~~l~~~g~~~l~~~~r~~ 187 (222)
+......|.+..++..+... ..+.||+|+|-+++ |. .+....+++.++..|+|||.+++.+...-.
T Consensus 177 ~v~~~ir~~V~F~~~NLl~~~~---~~~~fD~IfCRNVLIYFd~~~q~~il~~f~~~L~~gG~LflG~sE~~~ 246 (268)
T COG1352 177 RVKEELRKMVRFRRHNLLDDSP---FLGKFDLIFCRNVLIYFDEETQERILRRFADSLKPGGLLFLGHSETIP 246 (268)
T ss_pred EEChHHhcccEEeecCCCCCcc---ccCCCCEEEEcceEEeeCHHHHHHHHHHHHHHhCCCCEEEEccCcccC
Confidence 01233466777766554321 46789999998876 33 455677999999999999999998765443
No 214
>COG4076 Predicted RNA methylase [General function prediction only]
Probab=98.17 E-value=2.6e-06 Score=65.56 Aligned_cols=97 Identities=21% Similarity=0.222 Sum_probs=71.3
Q ss_pred CCeEEEeCCCccHHHHHHHHhCCEEEEecc-hhhHHHHHHHHHHhhccccccCCCCCCCCCceEEEEeecCCCccccccC
Q 027530 65 GKRVIELGAGCGVAGFGMALLGCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSGNLLGSIQAVELDWGNEDHIKAVA 143 (222)
Q Consensus 65 ~~~vLelGcG~G~~~i~la~~g~~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~ 143 (222)
...+-|||+|+|.++..+|+..-+|++++. +...+.+++|+..++. .+++++..|..+.+ -
T Consensus 33 ~d~~~DLGaGsGiLs~~Aa~~A~rViAiE~dPk~a~~a~eN~~v~g~-------------~n~evv~gDA~~y~-----f 94 (252)
T COG4076 33 EDTFADLGAGSGILSVVAAHAAERVIAIEKDPKRARLAEENLHVPGD-------------VNWEVVVGDARDYD-----F 94 (252)
T ss_pred hhceeeccCCcchHHHHHHhhhceEEEEecCcHHHHHhhhcCCCCCC-------------cceEEEeccccccc-----c
Confidence 368999999999999999999778999998 7788999999987773 58888886554332 1
Q ss_pred CCccEEEEe--ccccCccCHHHHHHHHHHhcCCCeEEE
Q 027530 144 PPFDYIIGT--DVVYAEHLLEPLLQTIFALSGPKTTIL 179 (222)
Q Consensus 144 ~~fD~Ii~~--d~~y~~~~~~~ll~~~~~~l~~~g~~~ 179 (222)
...|+|+|- |...-.+-.-++++.+.+.|+..+.++
T Consensus 95 e~ADvvicEmlDTaLi~E~qVpV~n~vleFLr~d~tii 132 (252)
T COG4076 95 ENADVVICEMLDTALIEEKQVPVINAVLEFLRYDPTII 132 (252)
T ss_pred cccceeHHHHhhHHhhcccccHHHHHHHHHhhcCCccc
Confidence 467888753 222223444557777777888776654
No 215
>PF05891 Methyltransf_PK: AdoMet dependent proline di-methyltransferase; InterPro: IPR008576 This family consists of several eukaryotic proteins of unknown function that are S-adenosyl-L-methionine-dependent methyltransferase-like.; GO: 0008168 methyltransferase activity; PDB: 1XTP_A 2EX4_B.
Probab=98.16 E-value=3.2e-06 Score=66.82 Aligned_cols=103 Identities=16% Similarity=0.056 Sum_probs=67.6
Q ss_pred CCCeEEEeCCCccHHHHHH-HHhCCEEEEecc-hhhHHHHHHHHHHhhccccccCCCCCCCCCceEEEEeecCCCccccc
Q 027530 64 KGKRVIELGAGCGVAGFGM-ALLGCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSGNLLGSIQAVELDWGNEDHIKA 141 (222)
Q Consensus 64 ~~~~vLelGcG~G~~~i~l-a~~g~~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~ 141 (222)
...+.||.|||.|.++--+ .+...+|-.+|. +..++.|++.+.... ....++.+....++. +
T Consensus 55 ~~~~alDcGAGIGRVTk~lLl~~f~~VDlVEp~~~Fl~~a~~~l~~~~-------------~~v~~~~~~gLQ~f~---P 118 (218)
T PF05891_consen 55 KFNRALDCGAGIGRVTKGLLLPVFDEVDLVEPVEKFLEQAKEYLGKDN-------------PRVGEFYCVGLQDFT---P 118 (218)
T ss_dssp --SEEEEET-TTTHHHHHTCCCC-SEEEEEES-HHHHHHHHHHTCCGG-------------CCEEEEEES-GGG------
T ss_pred CcceEEecccccchhHHHHHHHhcCEeEEeccCHHHHHHHHHHhcccC-------------CCcceEEecCHhhcc---C
Confidence 4468999999999999755 455557999998 668888887655321 122344443333222 2
Q ss_pred cCCCccEEEEeccccC--ccCHHHHHHHHHHhcCCCeEEEEEE
Q 027530 142 VAPPFDYIIGTDVVYA--EHLLEPLLQTIFALSGPKTTILLGY 182 (222)
Q Consensus 142 ~~~~fD~Ii~~d~~y~--~~~~~~ll~~~~~~l~~~g~~~l~~ 182 (222)
...+||+|..--|+-| ..++-.+++.++..|+|+|.+++-.
T Consensus 119 ~~~~YDlIW~QW~lghLTD~dlv~fL~RCk~~L~~~G~IvvKE 161 (218)
T PF05891_consen 119 EEGKYDLIWIQWCLGHLTDEDLVAFLKRCKQALKPNGVIVVKE 161 (218)
T ss_dssp -TT-EEEEEEES-GGGS-HHHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred CCCcEeEEEehHhhccCCHHHHHHHHHHHHHhCcCCcEEEEEe
Confidence 3569999999888765 3457779999999999999988744
No 216
>KOG0820 consensus Ribosomal RNA adenine dimethylase [RNA processing and modification]
Probab=98.09 E-value=2.8e-05 Score=63.20 Aligned_cols=99 Identities=20% Similarity=0.278 Sum_probs=72.5
Q ss_pred ccccccccchHHHHHHHHhhhccCCCCCCCCCCCCeEEEeCCCccHHHHHHHHhCCEEEEecc-hhhHHHHHHHHHHhhc
Q 027530 32 KHLGTTVWDASVVFVKYLEKNCRKGRFCPSKLKGKRVIELGAGCGVAGFGMALLGCNVITTDQ-IEVLPLLKRNVEWNTS 110 (222)
Q Consensus 32 ~~~g~~~W~~~~~la~~l~~~~~~~~~~~~~~~~~~vLelGcG~G~~~i~la~~g~~v~~~D~-~~~l~~~~~n~~~n~~ 110 (222)
.+.|.++=.-+.++.+.+.. ....+...|||+|-|||.++..+..+|++|++++. +.|+..+++..+-..
T Consensus 34 kd~GQHilkNp~v~~~I~~k--------a~~k~tD~VLEvGPGTGnLT~~lLe~~kkVvA~E~Dprmvael~krv~gtp- 104 (315)
T KOG0820|consen 34 KDFGQHILKNPLVIDQIVEK--------ADLKPTDVVLEVGPGTGNLTVKLLEAGKKVVAVEIDPRMVAELEKRVQGTP- 104 (315)
T ss_pred cccchhhhcCHHHHHHHHhc--------cCCCCCCEEEEeCCCCCHHHHHHHHhcCeEEEEecCcHHHHHHHHHhcCCC-
Confidence 45566655556666666554 34566779999999999999999999999999999 668888887665221
Q ss_pred cccccCCCCCCCCCceEEEEeecCCCccccccCCCccEEEEeccc
Q 027530 111 RISQMNPGSGNLLGSIQAVELDWGNEDHIKAVAPPFDYIIGTDVV 155 (222)
Q Consensus 111 ~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~fD~Ii~~d~~ 155 (222)
....+++..+|.-.. ....||.+|++-++
T Consensus 105 -----------~~~kLqV~~gD~lK~-----d~P~fd~cVsNlPy 133 (315)
T KOG0820|consen 105 -----------KSGKLQVLHGDFLKT-----DLPRFDGCVSNLPY 133 (315)
T ss_pred -----------ccceeeEEecccccC-----CCcccceeeccCCc
Confidence 235788888665443 24689999987554
No 217
>PF03141 Methyltransf_29: Putative S-adenosyl-L-methionine-dependent methyltransferase; InterPro: IPR004159 Members of this family of hypothetical plant proteins are putative methyltransferases. ; GO: 0008168 methyltransferase activity
Probab=98.06 E-value=1e-05 Score=70.95 Aligned_cols=99 Identities=13% Similarity=0.114 Sum_probs=65.0
Q ss_pred eEEEeCCCccHHHHHHHHhCCEEEEe---cchh-hHHHHHHHHHHhhccccccCCCCCCCCCceEEEEeecCCCcccccc
Q 027530 67 RVIELGAGCGVAGFGMALLGCNVITT---DQIE-VLPLLKRNVEWNTSRISQMNPGSGNLLGSIQAVELDWGNEDHIKAV 142 (222)
Q Consensus 67 ~vLelGcG~G~~~i~la~~g~~v~~~---D~~~-~l~~~~~n~~~n~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~ 142 (222)
++||+|||+|..|..+..++..+..+ |..+ .+..|.+ -|++ .-+.+. ....++++
T Consensus 120 ~~LDvGcG~aSF~a~l~~r~V~t~s~a~~d~~~~qvqfale----RGvp------------a~~~~~-----~s~rLPfp 178 (506)
T PF03141_consen 120 TALDVGCGVASFGAYLLERNVTTMSFAPNDEHEAQVQFALE----RGVP------------AMIGVL-----GSQRLPFP 178 (506)
T ss_pred EEEeccceeehhHHHHhhCCceEEEcccccCCchhhhhhhh----cCcc------------hhhhhh-----ccccccCC
Confidence 58999999999999999888753333 2211 2222221 1211 011111 11346677
Q ss_pred CCCccEEEEeccccCccCH-HHHHHHHHHhcCCCeEEEEEEEEcC
Q 027530 143 APPFDYIIGTDVVYAEHLL-EPLLQTIFALSGPKTTILLGYEIRS 186 (222)
Q Consensus 143 ~~~fD~Ii~~d~~y~~~~~-~~ll~~~~~~l~~~g~~~l~~~~r~ 186 (222)
+..||+|-++.|+-.+... .-++-.+.++|+|||.++++.++-+
T Consensus 179 ~~~fDmvHcsrc~i~W~~~~g~~l~evdRvLRpGGyfv~S~ppv~ 223 (506)
T PF03141_consen 179 SNAFDMVHCSRCLIPWHPNDGFLLFEVDRVLRPGGYFVLSGPPVY 223 (506)
T ss_pred ccchhhhhcccccccchhcccceeehhhhhhccCceEEecCCccc
Confidence 8999999999988654333 3478889999999999999987644
No 218
>KOG3045 consensus Predicted RNA methylase involved in rRNA processing [RNA processing and modification]
Probab=98.01 E-value=8.2e-05 Score=60.17 Aligned_cols=109 Identities=13% Similarity=0.086 Sum_probs=73.7
Q ss_pred CCCeEEEeCCCccHHHHHHHHhCCEEEEecchhhHHHHHHHHHHhhccccccCCCCCCCCCceEEEEeecCCCccccccC
Q 027530 64 KGKRVIELGAGCGVAGFGMALLGCNVITTDQIEVLPLLKRNVEWNTSRISQMNPGSGNLLGSIQAVELDWGNEDHIKAVA 143 (222)
Q Consensus 64 ~~~~vLelGcG~G~~~i~la~~g~~v~~~D~~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~ 143 (222)
.+..|-|+|||-+-++. ..-.+|+..|+-. . +-+++..|..+ .+..+
T Consensus 180 ~~~vIaD~GCGEakiA~---~~~~kV~SfDL~a----------~-----------------~~~V~~cDm~~---vPl~d 226 (325)
T KOG3045|consen 180 KNIVIADFGCGEAKIAS---SERHKVHSFDLVA----------V-----------------NERVIACDMRN---VPLED 226 (325)
T ss_pred CceEEEecccchhhhhh---ccccceeeeeeec----------C-----------------CCceeeccccC---CcCcc
Confidence 44679999999886554 3334588888411 0 11233333333 34457
Q ss_pred CCccEEEEeccccCccCHHHHHHHHHHhcCCCeEEEEEEEEcChhHHHHHHHHHh-cCCeEEEe
Q 027530 144 PPFDYIIGTDVVYAEHLLEPLLQTIFALSGPKTTILLGYEIRSTSVHEQMLQMWK-SNFNVKLV 206 (222)
Q Consensus 144 ~~fD~Ii~~d~~y~~~~~~~ll~~~~~~l~~~g~~~l~~~~r~~~~~~~f~~~~~-~~~~v~~v 206 (222)
++.|++|.+-.+. ..++..+++.+.++|++||.+||+...-.......|.+.+. -||.+...
T Consensus 227 ~svDvaV~CLSLM-gtn~~df~kEa~RiLk~gG~l~IAEv~SRf~dv~~f~r~l~~lGF~~~~~ 289 (325)
T KOG3045|consen 227 ESVDVAVFCLSLM-GTNLADFIKEANRILKPGGLLYIAEVKSRFSDVKGFVRALTKLGFDVKHK 289 (325)
T ss_pred CcccEEEeeHhhh-cccHHHHHHHHHHHhccCceEEEEehhhhcccHHHHHHHHHHcCCeeeeh
Confidence 8999998875553 56788999999999999999999976533333566887774 58877544
No 219
>TIGR01444 fkbM_fam methyltransferase, FkbM family. Members of this family are characterized by two well-conserved short regions separated by a variable in both sequence and length. The first of the two regions is found in a large number of proteins outside this subfamily, a number of which have been characterized as methyltransferases. One member of the present family, FkbM, was shown to be required for a specific methylation in the biosynthesis of the immunosuppressant FK506 in Streptomyces strain MA6548.
Probab=98.00 E-value=2.2e-05 Score=58.28 Aligned_cols=44 Identities=30% Similarity=0.413 Sum_probs=39.5
Q ss_pred eEEEeCCCccHHHHHHHHhCC--EEEEecc-hhhHHHHHHHHHHhhc
Q 027530 67 RVIELGAGCGVAGFGMALLGC--NVITTDQ-IEVLPLLKRNVEWNTS 110 (222)
Q Consensus 67 ~vLelGcG~G~~~i~la~~g~--~v~~~D~-~~~l~~~~~n~~~n~~ 110 (222)
++||+|||.|..++.+++.+. +|+++|. +++.+.+++|++.|+.
T Consensus 1 ~vlDiGa~~G~~~~~~~~~~~~~~v~~~E~~~~~~~~l~~~~~~n~~ 47 (143)
T TIGR01444 1 VVIDVGANIGDTSLYFARKGAEGRVIAFEPLPDAYEILEENVKLNNL 47 (143)
T ss_pred CEEEccCCccHHHHHHHHhCCCCEEEEEecCHHHHHHHHHHHHHcCC
Confidence 489999999999999998876 5999998 7799999999998874
No 220
>PF00398 RrnaAD: Ribosomal RNA adenine dimethylase; InterPro: IPR001737 This family of proteins include rRNA adenine dimethylases (e.g. KsgA) and the Erythromycin resistance methylases (Erm). The bacterial enzyme KsgA catalyses the transfer of a total of four methyl groups from S-adenosyl-l-methionine (S-AdoMet) to two adjacent adenosine bases in 16S rRNA. This enzyme and the resulting modified adenosine bases appear to be conserved in all species of eubacteria, eukaryotes, and archaea, and in eukaryotic organelles. Bacterial resistance to the aminoglycoside antibiotic kasugamycin involves inactivation of KsgA and resulting loss of the dimethylations, with modest consequences to the overall fitness of the organism. In contrast, the yeast ortholog, Dim1, is essential. In Saccharomyces cerevisiae (Baker's yeast), and presumably in other eukaryotes, the enzyme performs a vital role in pre-rRNA processing in addition to its methylating activity. The best conserved region in these enzymes is located in the N-terminal section and corresponds to a region that is probably involved in S-adenosyl methionine (SAM) binding domain. The crystal structure of KsgA from Escherichia coli has been solved to a resolution of 2.1A. It bears a strong similarity to the crystal structure of ErmC' from Bacillus stearothermophilus and a lesser similarity to the yeast mitochondrial transcription factor, sc-mtTFB []. The Erm family of RNA methyltransferases, which methylate a single adenosine base in 23S rRNA confer resistance to the MLS-B group of antibiotics. Despite their sequence similarity, the two enzyme families have strikingly different levels of regulation that remain to be elucidated. Other orthologs, of this family include the yeast and Homo sapiens (Human) mitochondrial transcription factors (MTF1 and h-mtTFB respectively), which are nuclear encoded []. Human-mtTFB is able to stimulate transcription in vitro independently of its S-adenosylmethionine binding and rRNA methyltransferase activity [].; GO: 0000179 rRNA (adenine-N6,N6-)-dimethyltransferase activity, 0008649 rRNA methyltransferase activity, 0000154 rRNA modification; PDB: 3FTF_A 3R9X_B 3FTE_A 3FTC_A 3FTD_A 3GRY_A 3FYC_A 3GRU_A 3FYD_A 3GRV_A ....
Probab=97.99 E-value=2.9e-05 Score=64.01 Aligned_cols=105 Identities=16% Similarity=0.200 Sum_probs=71.6
Q ss_pred HHHHHHHHhhhccCCCCCCCCCCCCeEEEeCCCccHHHHHHHHhCCEEEEecc-hhhHHHHHHHHHHhhccccccCCCCC
Q 027530 42 SVVFVKYLEKNCRKGRFCPSKLKGKRVIELGAGCGVAGFGMALLGCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSG 120 (222)
Q Consensus 42 ~~~la~~l~~~~~~~~~~~~~~~~~~vLelGcG~G~~~i~la~~g~~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~ 120 (222)
..-+++.+.+.+ ...++..|||+|+|+|.++..++..+.+|+++|. ++.++.+++....
T Consensus 15 ~~~~~~~Iv~~~-------~~~~~~~VlEiGpG~G~lT~~L~~~~~~v~~vE~d~~~~~~L~~~~~~------------- 74 (262)
T PF00398_consen 15 DPNIADKIVDAL-------DLSEGDTVLEIGPGPGALTRELLKRGKRVIAVEIDPDLAKHLKERFAS------------- 74 (262)
T ss_dssp HHHHHHHHHHHH-------TCGTTSEEEEESSTTSCCHHHHHHHSSEEEEEESSHHHHHHHHHHCTT-------------
T ss_pred CHHHHHHHHHhc-------CCCCCCEEEEeCCCCccchhhHhcccCcceeecCcHhHHHHHHHHhhh-------------
Confidence 345555555542 2337889999999999999999999999999999 5688888776552
Q ss_pred CCCCceEEEEeecCCCccccccCCCccEEEEeccccCccCHHHHHHHHHHh
Q 027530 121 NLLGSIQAVELDWGNEDHIKAVAPPFDYIIGTDVVYAEHLLEPLLQTIFAL 171 (222)
Q Consensus 121 ~~~~~v~~~~~d~~~~~~~~~~~~~fD~Ii~~d~~y~~~~~~~ll~~~~~~ 171 (222)
..++++...|..+.............|++|-+++ .-.+++..+...
T Consensus 75 --~~~~~vi~~D~l~~~~~~~~~~~~~~vv~NlPy~---is~~il~~ll~~ 120 (262)
T PF00398_consen 75 --NPNVEVINGDFLKWDLYDLLKNQPLLVVGNLPYN---ISSPILRKLLEL 120 (262)
T ss_dssp --CSSEEEEES-TTTSCGGGHCSSSEEEEEEEETGT---GHHHHHHHHHHH
T ss_pred --cccceeeecchhccccHHhhcCCceEEEEEeccc---chHHHHHHHhhc
Confidence 2588999877766544332345677888886652 223444444443
No 221
>KOG1663 consensus O-methyltransferase [Secondary metabolites biosynthesis, transport and catabolism]
Probab=97.98 E-value=0.00013 Score=57.98 Aligned_cols=106 Identities=16% Similarity=0.166 Sum_probs=77.5
Q ss_pred CCCCCeEEEeCCCccHHHHHHHHh---CCEEEEecc-hhhHHHHHHHHHHhhccccccCCCCCCCCCceEEEEeecCCCc
Q 027530 62 KLKGKRVIELGAGCGVAGFGMALL---GCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSGNLLGSIQAVELDWGNED 137 (222)
Q Consensus 62 ~~~~~~vLelGcG~G~~~i~la~~---g~~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~v~~~~~d~~~~~ 137 (222)
.+..+++||||.=||.-++..|.. +.+|+++|+ .+..+...+-.+..+.. ..|++++..-.+.-
T Consensus 71 ~~~ak~~lelGvfTGySaL~~Alalp~dGrv~a~eid~~~~~~~~~~~k~agv~------------~KI~~i~g~a~esL 138 (237)
T KOG1663|consen 71 LLNAKRTLELGVFTGYSALAVALALPEDGRVVAIEIDADAYEIGLELVKLAGVD------------HKITFIEGPALESL 138 (237)
T ss_pred HhCCceEEEEecccCHHHHHHHHhcCCCceEEEEecChHHHHHhHHHHHhcccc------------ceeeeeecchhhhH
Confidence 346689999999999988887765 678999999 56888888877777753 57888875544321
Q ss_pred c-c--cccCCCccEEEEeccccCccCHHHHHHHHHHhcCCCeEEEEEE
Q 027530 138 H-I--KAVAPPFDYIIGTDVVYAEHLLEPLLQTIFALSGPKTTILLGY 182 (222)
Q Consensus 138 ~-~--~~~~~~fD~Ii~~d~~y~~~~~~~ll~~~~~~l~~~g~~~l~~ 182 (222)
+ + ....+.||+++.- .+.......+..+-+++++||++++-.
T Consensus 139 d~l~~~~~~~tfDfaFvD---adK~nY~~y~e~~l~Llr~GGvi~~DN 183 (237)
T KOG1663|consen 139 DELLADGESGTFDFAFVD---ADKDNYSNYYERLLRLLRVGGVIVVDN 183 (237)
T ss_pred HHHHhcCCCCceeEEEEc---cchHHHHHHHHHHHhhcccccEEEEec
Confidence 1 1 1235789999864 234555578888889999999887643
No 222
>COG1189 Predicted rRNA methylase [Translation, ribosomal structure and biogenesis]
Probab=97.97 E-value=8.3e-05 Score=59.48 Aligned_cols=112 Identities=17% Similarity=0.128 Sum_probs=75.3
Q ss_pred chHHHHHHHHhhhccCCCCCCCCCCCCeEEEeCCCccHHHHHHHHhCC-EEEEecchh--hHHHHHHHHHHhhccccccC
Q 027530 40 DASVVFVKYLEKNCRKGRFCPSKLKGKRVIELGAGCGVAGFGMALLGC-NVITTDQIE--VLPLLKRNVEWNTSRISQMN 116 (222)
Q Consensus 40 ~~~~~la~~l~~~~~~~~~~~~~~~~~~vLelGcG~G~~~i~la~~g~-~v~~~D~~~--~l~~~~~n~~~n~~~~~~~~ 116 (222)
.++.-|.+.+.+. .-+++|+.|||+|+-||-.+-.+.+.|| +|+++|... +..-++.+
T Consensus 62 RG~~KL~~ale~F-------~l~~k~kv~LDiGsSTGGFTd~lLq~gAk~VyavDVG~~Ql~~kLR~d------------ 122 (245)
T COG1189 62 RGGLKLEKALEEF-------ELDVKGKVVLDIGSSTGGFTDVLLQRGAKHVYAVDVGYGQLHWKLRND------------ 122 (245)
T ss_pred cHHHHHHHHHHhc-------CcCCCCCEEEEecCCCccHHHHHHHcCCcEEEEEEccCCccCHhHhcC------------
Confidence 4578888888877 5688999999999999999999999998 599999732 33232221
Q ss_pred CCCCCCCCceEEE-EeecCCCccccccCCCccEEEEeccccCccCHHHHHHHHHHhcCCCeEEEEE
Q 027530 117 PGSGNLLGSIQAV-ELDWGNEDHIKAVAPPFDYIIGTDVVYAEHLLEPLLQTIFALSGPKTTILLG 181 (222)
Q Consensus 117 ~~~~~~~~~v~~~-~~d~~~~~~~~~~~~~fD~Ii~~d~~y~~~~~~~ll~~~~~~l~~~g~~~l~ 181 (222)
.++.+. ..+...... ....+..|++++.-.+ -....++..+..+++|++.+++-
T Consensus 123 -------~rV~~~E~tN~r~l~~-~~~~~~~d~~v~DvSF---ISL~~iLp~l~~l~~~~~~~v~L 177 (245)
T COG1189 123 -------PRVIVLERTNVRYLTP-EDFTEKPDLIVIDVSF---ISLKLILPALLLLLKDGGDLVLL 177 (245)
T ss_pred -------CcEEEEecCChhhCCH-HHcccCCCeEEEEeeh---hhHHHHHHHHHHhcCCCceEEEE
Confidence 233332 222222111 1123478888865443 34667888888889988776653
No 223
>COG0144 Sun tRNA and rRNA cytosine-C5-methylases [Translation, ribosomal structure and biogenesis]
Probab=97.96 E-value=0.0001 Score=63.37 Aligned_cols=109 Identities=23% Similarity=0.272 Sum_probs=72.7
Q ss_pred CCCCCCeEEEeCCCccHHHHHHHHh----CCEEEEecc-hhhHHHHHHHHHHhhccccccCCCCCCCCCceEEEEeecCC
Q 027530 61 SKLKGKRVIELGAGCGVAGFGMALL----GCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSGNLLGSIQAVELDWGN 135 (222)
Q Consensus 61 ~~~~~~~vLelGcG~G~~~i~la~~----g~~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~v~~~~~d~~~ 135 (222)
...+|.+|||++++.|-=+..+|++ |..|++.|. +.=++.+++|+++-++. ++.+...|-..
T Consensus 153 ~p~pge~VlD~cAAPGGKTthla~~~~~~~~iV~A~D~~~~Rl~~l~~nl~RlG~~-------------nv~~~~~d~~~ 219 (355)
T COG0144 153 DPKPGERVLDLCAAPGGKTTHLAELMENEGAIVVAVDVSPKRLKRLRENLKRLGVR-------------NVIVVNKDARR 219 (355)
T ss_pred CCCCcCEEEEECCCCCCHHHHHHHhcCCCCceEEEEcCCHHHHHHHHHHHHHcCCC-------------ceEEEeccccc
Confidence 3457899999999998766555554 345899999 55899999999988853 45555544332
Q ss_pred CccccccCCCccEEEEec------cccCc----------------cCHHHHHHHHHHhcCCCeEEEEEE
Q 027530 136 EDHIKAVAPPFDYIIGTD------VVYAE----------------HLLEPLLQTIFALSGPKTTILLGY 182 (222)
Q Consensus 136 ~~~~~~~~~~fD~Ii~~d------~~y~~----------------~~~~~ll~~~~~~l~~~g~~~l~~ 182 (222)
.........+||.|+.-. ++... .....++....+++||||.++.++
T Consensus 220 ~~~~~~~~~~fD~iLlDaPCSg~G~irr~Pd~~~~~~~~~i~~l~~lQ~~iL~~a~~~lk~GG~LVYST 288 (355)
T COG0144 220 LAELLPGGEKFDRILLDAPCSGTGVIRRDPDVKWRRTPEDIAELAKLQKEILAAALKLLKPGGVLVYST 288 (355)
T ss_pred ccccccccCcCcEEEECCCCCCCcccccCccccccCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEc
Confidence 222222233699998632 22111 124558888888999999887664
No 224
>PRK01544 bifunctional N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase/tRNA (m7G46) methyltransferase; Reviewed
Probab=97.95 E-value=5.6e-05 Score=67.96 Aligned_cols=107 Identities=12% Similarity=0.035 Sum_probs=72.7
Q ss_pred CCCeEEEeCCCccHHHHHHHHhCC--EEEEecc-hhhHHHHHHHHHHhhccccccCCCCCCCCCceEEEEeecCCCcccc
Q 027530 64 KGKRVIELGAGCGVAGFGMALLGC--NVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSGNLLGSIQAVELDWGNEDHIK 140 (222)
Q Consensus 64 ~~~~vLelGcG~G~~~i~la~~g~--~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~ 140 (222)
.+..+||||||.|-..+.+|.... .++|+|+ ...+..+.+.+...++ .|+.+...++..... .
T Consensus 347 ~~p~~lEIG~G~G~~~~~~A~~~p~~~~iGiE~~~~~~~~~~~~~~~~~l-------------~N~~~~~~~~~~~~~-~ 412 (506)
T PRK01544 347 KRKVFLEIGFGMGEHFINQAKMNPDALFIGVEVYLNGVANVLKLAGEQNI-------------TNFLLFPNNLDLILN-D 412 (506)
T ss_pred CCceEEEECCCchHHHHHHHHhCCCCCEEEEEeeHHHHHHHHHHHHHcCC-------------CeEEEEcCCHHHHHH-h
Confidence 456799999999999999998876 5999998 5556655555554443 366666544321111 1
Q ss_pred ccCCCccEEEEe--ccccCcc------CHHHHHHHHHHhcCCCeEEEEEEEE
Q 027530 141 AVAPPFDYIIGT--DVVYAEH------LLEPLLQTIFALSGPKTTILLGYEI 184 (222)
Q Consensus 141 ~~~~~fD~Ii~~--d~~y~~~------~~~~ll~~~~~~l~~~g~~~l~~~~ 184 (222)
..+.++|.|..+ |+=.-.. ..+.+++.+.++|+|||.+++.+-.
T Consensus 413 ~~~~sv~~i~i~FPDPWpKkrh~krRl~~~~fl~~~~~~Lk~gG~i~~~TD~ 464 (506)
T PRK01544 413 LPNNSLDGIYILFPDPWIKNKQKKKRIFNKERLKILQDKLKDNGNLVFASDI 464 (506)
T ss_pred cCcccccEEEEECCCCCCCCCCccccccCHHHHHHHHHhcCCCCEEEEEcCC
Confidence 235678887654 3332211 2466999999999999999987654
No 225
>PF01728 FtsJ: FtsJ-like methyltransferase; InterPro: IPR002877 RrmJ (FtsJ) is a well conserved heat shock protein present in prokaryotes, archaea, and eukaryotes. RrmJ is responsible for methylating 23 S rRNA at position U2552 in the aminoacyl (A)1-site of the ribosome []. U2552 is one of the five universally conserved A-loop residues and has been shown to be methylated at the ribose 2'-OH group in the majority of organisms investigated so far. This suggests that this modification plays an important role in the A-loop function. RrmJ recognises its methylation target only when the 23 S rRNA is present in 50 S ribosomal subunits. This suggests that the RrmJ-mediated methylation must occur late in the maturation process of the ribosome. This is in contrast to other known 23 S rRNA modifications that occur in earlier maturation steps. The 1.5 A crystal structure of RrmJ in complex with its cofactor S-adenosylmethionine revealed that RrmJ has a methyltransferase fold. The active site of RrmJ appears to be formed by a catalytic triad consisting of two lysine residues and the negatively charged aspartate residue. Another highly conserved glutamate residue that is present in the active site of RrmJ appears to play only a minor role in the methyltransfer reaction in vivo []. ; GO: 0003676 nucleic acid binding, 0008168 methyltransferase activity, 0032259 methylation; PDB: 3GCZ_A 2PLW_A 2NYU_A 2OXT_C 3EMD_A 3ELY_A 3ELW_A 3ELU_A 3ELD_A 3EMB_A ....
Probab=97.84 E-value=2e-05 Score=61.15 Aligned_cols=49 Identities=29% Similarity=0.194 Sum_probs=35.5
Q ss_pred hHHHHHHHHhhhccCCCCCC-CCC-CCCeEEEeCCCccHHHHHHHHhC---CEEEEecchh
Q 027530 41 ASVVFVKYLEKNCRKGRFCP-SKL-KGKRVIELGAGCGVAGFGMALLG---CNVITTDQIE 96 (222)
Q Consensus 41 ~~~~la~~l~~~~~~~~~~~-~~~-~~~~vLelGcG~G~~~i~la~~g---~~v~~~D~~~ 96 (222)
++..|.+.+... . ... .+.+||||||++|-.+..+.+.+ .+|+++|+..
T Consensus 5 a~~KL~ei~~~~-------~~~~~~~~~~vlDlG~aPGGws~~~~~~~~~~~~v~avDl~~ 58 (181)
T PF01728_consen 5 AAFKLYEIDEKF-------KIFKPGKGFTVLDLGAAPGGWSQVLLQRGGPAGRVVAVDLGP 58 (181)
T ss_dssp HHHHHHHHHHTT-------SSS-TTTTEEEEEET-TTSHHHHHHHTSTTTEEEEEEEESSS
T ss_pred HHHHHHHHHHHC-------CCCCcccccEEEEcCCcccceeeeeeecccccceEEEEeccc
Confidence 455666666554 2 112 45899999999999999999887 5799999843
No 226
>PF01564 Spermine_synth: Spermine/spermidine synthase; InterPro: IPR001045 Synonym(s): Spermidine aminopropyltransferase A group of polyamine biosynthetic enzymes involved in the fifth (last) step in the biosynthesis of spermidine from arginine and methionine which includes; spermidine synthase (2.5.1.16 from EC), spermine synthase (2.5.1.22 from EC) and putrescine N-methyltransferase (2.1.1.53 from EC) []. The Thermotoga maritima spermidine synthase monomer consists of two domains: an N-terminal domain composed of six beta-strands, and a Rossmann-like C- terminal domain []. The larger C-terminal catalytic core domain consists of a seven-stranded beta-sheet flanked by nine alpha helices. This domain resembles a topology observed in a number of nucleotide and dinucleotide-binding enzymes, and in S-adenosyl-L-methionine (AdoMet)- dependent methyltransferase (MTases) [].; GO: 0003824 catalytic activity; PDB: 2E5W_C 2ZSU_E 2O0L_B 2O05_B 2O06_B 2O07_B 3RW9_B 2PWP_A 2HTE_B 3RIE_B ....
Probab=97.84 E-value=0.0002 Score=58.46 Aligned_cols=128 Identities=16% Similarity=0.113 Sum_probs=81.0
Q ss_pred CCCeEEEeCCCccHHHHHHHHhC--CEEEEecc-hhhHHHHHHHHHHhhccccccCCCCCCCCCceEEEEeecCCCcccc
Q 027530 64 KGKRVIELGAGCGVAGFGMALLG--CNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSGNLLGSIQAVELDWGNEDHIK 140 (222)
Q Consensus 64 ~~~~vLelGcG~G~~~i~la~~g--~~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~ 140 (222)
+.++||=||-|.|...-.+.+.. .+|+++|+ +.+++.+++-+...... -..+++++...|-... +.
T Consensus 76 ~p~~VLiiGgG~G~~~~ell~~~~~~~i~~VEiD~~Vv~~a~~~f~~~~~~---------~~d~r~~i~~~Dg~~~--l~ 144 (246)
T PF01564_consen 76 NPKRVLIIGGGDGGTARELLKHPPVESITVVEIDPEVVELARKYFPEFSEG---------LDDPRVRIIIGDGRKF--LK 144 (246)
T ss_dssp ST-EEEEEESTTSHHHHHHTTSTT-SEEEEEES-HHHHHHHHHHTHHHHTT---------GGSTTEEEEESTHHHH--HH
T ss_pred CcCceEEEcCCChhhhhhhhhcCCcceEEEEecChHHHHHHHHhchhhccc---------cCCCceEEEEhhhHHH--HH
Confidence 45899999999999888888765 47999999 56999998876654321 0235788876332211 12
Q ss_pred ccCC-CccEEEEe--ccccCcc--CHHHHHHHHHHhcCCCeEEEEEEEEcC--hhHHHHHHHHHhcCCe
Q 027530 141 AVAP-PFDYIIGT--DVVYAEH--LLEPLLQTIFALSGPKTTILLGYEIRS--TSVHEQMLQMWKSNFN 202 (222)
Q Consensus 141 ~~~~-~fD~Ii~~--d~~y~~~--~~~~ll~~~~~~l~~~g~~~l~~~~r~--~~~~~~f~~~~~~~~~ 202 (222)
...+ +||+|+.- ++..... .-..+++.++++|+|+|++.+-..... ........+.++..|.
T Consensus 145 ~~~~~~yDvIi~D~~dp~~~~~~l~t~ef~~~~~~~L~~~Gv~v~~~~~~~~~~~~~~~i~~tl~~~F~ 213 (246)
T PF01564_consen 145 ETQEEKYDVIIVDLTDPDGPAPNLFTREFYQLCKRRLKPDGVLVLQAGSPFLHPELFKSILKTLRSVFP 213 (246)
T ss_dssp TSSST-EEEEEEESSSTTSCGGGGSSHHHHHHHHHHEEEEEEEEEEEEETTTTHHHHHHHHHHHHTTSS
T ss_pred hccCCcccEEEEeCCCCCCCcccccCHHHHHHHHhhcCCCcEEEEEccCcccchHHHHHHHHHHHHhCC
Confidence 2234 89999963 2111111 136799999999999999877553322 2233444455555553
No 227
>KOG3987 consensus Uncharacterized conserved protein DREV/CGI-81 [Function unknown]
Probab=97.84 E-value=5.8e-06 Score=64.59 Aligned_cols=94 Identities=20% Similarity=0.270 Sum_probs=70.4
Q ss_pred CCCeEEEeCCCccHHHHHHHHhCCEEEEecchh-hHHHHHHHHHHhhccccccCCCCCCCCCceEEEEeecCCCcccccc
Q 027530 64 KGKRVIELGAGCGVAGFGMALLGCNVITTDQIE-VLPLLKRNVEWNTSRISQMNPGSGNLLGSIQAVELDWGNEDHIKAV 142 (222)
Q Consensus 64 ~~~~vLelGcG~G~~~i~la~~g~~v~~~D~~~-~l~~~~~n~~~n~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~ 142 (222)
+..++||||+|.|-++..++..--+|++|+.++ |...+++. .. + .....+|.+.
T Consensus 112 ~~~~lLDlGAGdGeit~~m~p~feevyATElS~tMr~rL~kk-~y-----------------n-Vl~~~ew~~t------ 166 (288)
T KOG3987|consen 112 EPVTLLDLGAGDGEITLRMAPTFEEVYATELSWTMRDRLKKK-NY-----------------N-VLTEIEWLQT------ 166 (288)
T ss_pred CCeeEEeccCCCcchhhhhcchHHHHHHHHhhHHHHHHHhhc-CC-----------------c-eeeehhhhhc------
Confidence 457999999999999998887766799999865 66666542 10 1 1234566533
Q ss_pred CCCccEEEEeccccCccCHHHHHHHHHHhcCC-CeEEEEEE
Q 027530 143 APPFDYIIGTDVVYAEHLLEPLLQTIFALSGP-KTTILLGY 182 (222)
Q Consensus 143 ~~~fD~Ii~~d~~y~~~~~~~ll~~~~~~l~~-~g~~~l~~ 182 (222)
+-+||+|.+-.++-...+.-.+++.|+.+++| +|+++++-
T Consensus 167 ~~k~dli~clNlLDRc~~p~kLL~Di~~vl~psngrvivaL 207 (288)
T KOG3987|consen 167 DVKLDLILCLNLLDRCFDPFKLLEDIHLVLAPSNGRVIVAL 207 (288)
T ss_pred CceeehHHHHHHHHhhcChHHHHHHHHHHhccCCCcEEEEE
Confidence 46899999888886666677899999999998 88888764
No 228
>PF07942 N2227: N2227-like protein; InterPro: IPR012901 This family features sequences that are similar to a region of hypothetical yeast gene product N2227 (P53934 from SWISSPROT). This is thought to be expressed during meiosis and may be involved in the defence response to stressful conditions [].
Probab=97.82 E-value=0.00036 Score=57.45 Aligned_cols=142 Identities=18% Similarity=0.149 Sum_probs=84.7
Q ss_pred CCCCCeEEEeCCCccHHHHHHHHhCCEEEEecchh-hHHHHHHHHHHhhc------ccc--------------cc-----
Q 027530 62 KLKGKRVIELGAGCGVAGFGMALLGCNVITTDQIE-VLPLLKRNVEWNTS------RIS--------------QM----- 115 (222)
Q Consensus 62 ~~~~~~vLelGcG~G~~~i~la~~g~~v~~~D~~~-~l~~~~~n~~~n~~------~~~--------------~~----- 115 (222)
...+.+||==|||.|.++..+|.+|..+.+.|.+- |+-. .|.-.|.. .+- +.
T Consensus 54 ~~~~~~VLVPGsGLGRLa~Eia~~G~~~~gnE~S~~Mll~--s~fiLn~~~~~~~~~I~Pf~~~~sn~~~~~dqlr~v~i 131 (270)
T PF07942_consen 54 DRSKIRVLVPGSGLGRLAWEIAKLGYAVQGNEFSYFMLLA--SNFILNHCSQPNQFTIYPFVHSFSNQKSREDQLRPVRI 131 (270)
T ss_pred CCCccEEEEcCCCcchHHHHHhhccceEEEEEchHHHHHH--HHHHHcccCCCCcEEEecceecccCCCCHHHhCCceEe
Confidence 34557899999999999999999999999999865 5322 33333321 110 00
Q ss_pred ---CCCC-CCCCCceEEEEeecCCCccccccCCCccEEEEeccccCccCHHHHHHHHHHhcCCCeEEEEEEEE----cC-
Q 027530 116 ---NPGS-GNLLGSIQAVELDWGNEDHIKAVAPPFDYIIGTDVVYAEHLLEPLLQTIFALSGPKTTILLGYEI----RS- 186 (222)
Q Consensus 116 ---~~~~-~~~~~~v~~~~~d~~~~~~~~~~~~~fD~Ii~~d~~y~~~~~~~ll~~~~~~l~~~g~~~l~~~~----r~- 186 (222)
.|.. .....++....+|+.+........++||.|+.+=.+=-.+++-..+++|.++|||||..+=..+- ..
T Consensus 132 PDv~p~~~~~~~~~~sm~aGDF~e~y~~~~~~~~~d~VvT~FFIDTA~Ni~~Yi~tI~~lLkpgG~WIN~GPLlyh~~~~ 211 (270)
T PF07942_consen 132 PDVDPSSELPSPSNLSMCAGDFLEVYGPDENKGSFDVVVTCFFIDTAENIIEYIETIEHLLKPGGYWINFGPLLYHFEPM 211 (270)
T ss_pred CCcCcccccCCCCceeEecCccEEecCCcccCCcccEEEEEEEeechHHHHHHHHHHHHHhccCCEEEecCCccccCCCC
Confidence 0100 01234555555444433222222479999998822222345667899999999999965533221 11
Q ss_pred --------hhHHHHHHHHHh-cCCeEEE
Q 027530 187 --------TSVHEQMLQMWK-SNFNVKL 205 (222)
Q Consensus 187 --------~~~~~~f~~~~~-~~~~v~~ 205 (222)
.-..+++....+ .||++..
T Consensus 212 ~~~~~~sveLs~eEi~~l~~~~GF~~~~ 239 (270)
T PF07942_consen 212 SIPNEMSVELSLEEIKELIEKLGFEIEK 239 (270)
T ss_pred CCCCCcccCCCHHHHHHHHHHCCCEEEE
Confidence 112456666664 4887753
No 229
>KOG1709 consensus Guanidinoacetate methyltransferase and related proteins [Amino acid transport and metabolism]
Probab=97.81 E-value=0.00016 Score=56.97 Aligned_cols=104 Identities=18% Similarity=0.119 Sum_probs=77.2
Q ss_pred CCCCeEEEeCCCccHHHHHHHHhCC-EEEEecc-hhhHHHHHHHHHHhhccccccCCCCCCCCCceEEEEeecCCCcccc
Q 027530 63 LKGKRVIELGAGCGVAGFGMALLGC-NVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSGNLLGSIQAVELDWGNEDHIK 140 (222)
Q Consensus 63 ~~~~~vLelGcG~G~~~i~la~~g~-~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~ 140 (222)
.+|.+||++|-|.|+..-.+..... +-+.++. ++++..++.+.-.. .++|.+..+.|.+....
T Consensus 100 tkggrvLnVGFGMgIidT~iQe~~p~~H~IiE~hp~V~krmr~~gw~e--------------k~nViil~g~WeDvl~~- 164 (271)
T KOG1709|consen 100 TKGGRVLNVGFGMGIIDTFIQEAPPDEHWIIEAHPDVLKRMRDWGWRE--------------KENVIILEGRWEDVLNT- 164 (271)
T ss_pred hCCceEEEeccchHHHHHHHhhcCCcceEEEecCHHHHHHHHhccccc--------------ccceEEEecchHhhhcc-
Confidence 4788999999999998888877765 4677786 88888888765433 25888899999876432
Q ss_pred ccCCCccEEEEeccc-cCccCHHHHHHHHHHhcCCCeEEEEEE
Q 027530 141 AVAPPFDYIIGTDVV-YAEHLLEPLLQTIFALSGPKTTILLGY 182 (222)
Q Consensus 141 ~~~~~fD~Ii~~d~~-y~~~~~~~ll~~~~~~l~~~g~~~l~~ 182 (222)
.+++.||-|+- |.+ -..++...+.+.+.++|||+|++-...
T Consensus 165 L~d~~FDGI~y-DTy~e~yEdl~~~hqh~~rLLkP~gv~SyfN 206 (271)
T KOG1709|consen 165 LPDKHFDGIYY-DTYSELYEDLRHFHQHVVRLLKPEGVFSYFN 206 (271)
T ss_pred ccccCcceeEe-echhhHHHHHHHHHHHHhhhcCCCceEEEec
Confidence 23667999974 333 234556778889999999999875543
No 230
>PRK11760 putative 23S rRNA C2498 ribose 2'-O-ribose methyltransferase; Provisional
Probab=97.81 E-value=0.00055 Score=57.96 Aligned_cols=116 Identities=12% Similarity=0.104 Sum_probs=68.4
Q ss_pred hHHHHHHHHhhhccCCCCCCCCCCCCeEEEeCCCccHHHHHHHHhCCEEEEecchhhHHHHHHHHHHhhccccccCCCCC
Q 027530 41 ASVVFVKYLEKNCRKGRFCPSKLKGKRVIELGAGCGVAGFGMALLGCNVITTDQIEVLPLLKRNVEWNTSRISQMNPGSG 120 (222)
Q Consensus 41 ~~~~la~~l~~~~~~~~~~~~~~~~~~vLelGcG~G~~~i~la~~g~~v~~~D~~~~l~~~~~n~~~n~~~~~~~~~~~~ 120 (222)
++..|.+.+........-.....+|+++|||||++|-.+..+.+.|++|+++|...+-. ++..
T Consensus 188 s~lKLeEA~~~F~~~~~~~~~~~~g~~vlDLGAsPGGWT~~L~~rG~~V~AVD~g~l~~----~L~~------------- 250 (357)
T PRK11760 188 STLKLEEAFHVFIPRDEWDERLAPGMRAVDLGAAPGGWTYQLVRRGMFVTAVDNGPMAQ----SLMD------------- 250 (357)
T ss_pred HHHHHHHHHHhcccchhhhcccCCCCEEEEeCCCCcHHHHHHHHcCCEEEEEechhcCH----hhhC-------------
Confidence 45566665544311000001246889999999999999999999999999999644322 2221
Q ss_pred CCCCceEEEEeecCCCccccccCCCccEEEEeccccCccCHHHHHHHHHHhcCCC--eEEEEEE
Q 027530 121 NLLGSIQAVELDWGNEDHIKAVAPPFDYIIGTDVVYAEHLLEPLLQTIFALSGPK--TTILLGY 182 (222)
Q Consensus 121 ~~~~~v~~~~~d~~~~~~~~~~~~~fD~Ii~~d~~y~~~~~~~ll~~~~~~l~~~--g~~~l~~ 182 (222)
..+|.....+-.... + ....+|++++ |+.. ....+++.+.+.+..| ..+++.-
T Consensus 251 --~~~V~h~~~d~fr~~--p-~~~~vDwvVc-Dmve---~P~rva~lm~~Wl~~g~cr~aIfnL 305 (357)
T PRK11760 251 --TGQVEHLRADGFKFR--P-PRKNVDWLVC-DMVE---KPARVAELMAQWLVNGWCREAIFNL 305 (357)
T ss_pred --CCCEEEEeccCcccC--C-CCCCCCEEEE-eccc---CHHHHHHHHHHHHhcCcccEEEEEE
Confidence 235665553322221 1 1568999985 5543 3445666666666544 3444443
No 231
>COG0500 SmtA SAM-dependent methyltransferases [Secondary metabolites biosynthesis, transport, and catabolism / General function prediction only]
Probab=97.80 E-value=0.00063 Score=49.58 Aligned_cols=103 Identities=23% Similarity=0.279 Sum_probs=64.6
Q ss_pred EEEeCCCccHHHHHHHHhC---CEEEEecc-hhhHHHHHHHHHHhhccccccCCCCCCCCCceEEEEeecCCCccccccC
Q 027530 68 VIELGAGCGVAGFGMALLG---CNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSGNLLGSIQAVELDWGNEDHIKAVA 143 (222)
Q Consensus 68 vLelGcG~G~~~i~la~~g---~~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~ 143 (222)
++|+|||+|... .++... ..++++|. +.++...+........ ..+.+...+.... ..+...
T Consensus 52 ~ld~~~g~g~~~-~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~-------------~~~~~~~~~~~~~-~~~~~~ 116 (257)
T COG0500 52 VLDIGCGTGRLA-LLARLGGRGAYVVGVDLSPEMLALARARAEGAGL-------------GLVDFVVADALGG-VLPFED 116 (257)
T ss_pred eEEecCCcCHHH-HHHHhCCCCceEEEEeCCHHHHHHHHhhhhhcCC-------------CceEEEEeccccC-CCCCCC
Confidence 999999999876 444443 37899998 4567664433322110 0145555554431 122223
Q ss_pred -CCccEEEEeccccCccCHHHHHHHHHHhcCCCeEEEEEEEEcC
Q 027530 144 -PPFDYIIGTDVVYAEHLLEPLLQTIFALSGPKTTILLGYEIRS 186 (222)
Q Consensus 144 -~~fD~Ii~~d~~y~~~~~~~ll~~~~~~l~~~g~~~l~~~~r~ 186 (222)
..||++......++.. ....+..+.+.++|+|.+++......
T Consensus 117 ~~~~d~~~~~~~~~~~~-~~~~~~~~~~~l~~~g~~~~~~~~~~ 159 (257)
T COG0500 117 SASFDLVISLLVLHLLP-PAKALRELLRVLKPGGRLVLSDLLRD 159 (257)
T ss_pred CCceeEEeeeeehhcCC-HHHHHHHHHHhcCCCcEEEEEeccCC
Confidence 4799994444433333 78899999999999999988776543
No 232
>KOG1501 consensus Arginine N-methyltransferase [General function prediction only]
Probab=97.79 E-value=5.4e-05 Score=65.34 Aligned_cols=45 Identities=18% Similarity=0.303 Sum_probs=41.0
Q ss_pred eEEEeCCCccHHHHHHHHhCC-EEEEecc-hhhHHHHHHHHHHhhcc
Q 027530 67 RVIELGAGCGVAGFGMALLGC-NVITTDQ-IEVLPLLKRNVEWNTSR 111 (222)
Q Consensus 67 ~vLelGcG~G~~~i~la~~g~-~v~~~D~-~~~l~~~~~n~~~n~~~ 111 (222)
.|||+|+|||++++++++.|+ .||+++. ..|.+.|++-..+|+.+
T Consensus 69 ~vLdigtGTGLLSmMAvragaD~vtA~EvfkPM~d~arkI~~kng~S 115 (636)
T KOG1501|consen 69 FVLDIGTGTGLLSMMAVRAGADSVTACEVFKPMVDLARKIMHKNGMS 115 (636)
T ss_pred EEEEccCCccHHHHHHHHhcCCeEEeehhhchHHHHHHHHHhcCCCc
Confidence 489999999999999999998 4999997 77999999999999854
No 233
>KOG2497 consensus Predicted methyltransferase [General function prediction only]
Probab=97.77 E-value=2.3e-05 Score=64.11 Aligned_cols=133 Identities=22% Similarity=0.174 Sum_probs=80.3
Q ss_pred EEEeeCCC----CccccccccchHHHHHHHHhhhccCCCCCCCCCCCCeEEEeCCCccHHHHHHHHhCCEEEEecc-hhh
Q 027530 23 LQFSQDPN----SKHLGTTVWDASVVFVKYLEKNCRKGRFCPSKLKGKRVIELGAGCGVAGFGMALLGCNVITTDQ-IEV 97 (222)
Q Consensus 23 ~~i~q~~~----~~~~g~~~W~~~~~la~~l~~~~~~~~~~~~~~~~~~vLelGcG~G~~~i~la~~g~~v~~~D~-~~~ 97 (222)
..+.|... ...+|..+|++++.|+.++.++ +....+.++.++|||.++..+.+++..--|...|. ..+
T Consensus 52 ~v~~~~~~~~~~~~~tg~~~w~~al~L~~~l~~~-------~d~~~~~~v~~l~~gi~~~~~~~a~~~~~v~~~~~~~~~ 124 (262)
T KOG2497|consen 52 KVILQSHSLRFLLARTGLSVWESALSLEADLRDK-------PDLSSELTVEELGCDIALKHVLAARVPDCVVTLDSLRCA 124 (262)
T ss_pred eeeecchHHHHHHHHhccccchHHHHHHHHHhhC-------cccccccchHhhccCHHHHHHHHHhcccceecCCccCcH
Confidence 44555543 3568889999999999999987 55578899999999999988666655444444443 223
Q ss_pred HHHHHHHHHHhhccccccCCCCCCCCCceEEEEeecCCCccccc-cCCCccEEEEeccccCccCHHHHHHHHHHhc
Q 027530 98 LPLLKRNVEWNTSRISQMNPGSGNLLGSIQAVELDWGNEDHIKA-VAPPFDYIIGTDVVYAEHLLEPLLQTIFALS 172 (222)
Q Consensus 98 l~~~~~n~~~n~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~-~~~~fD~Ii~~d~~y~~~~~~~ll~~~~~~l 172 (222)
.-....+...+..... ...-+.-..+|......+. ....+|+|+++|++|. ....+++..+..+|
T Consensus 125 ~~~l~~~~~~~~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~~dll~~AdV~yd-~~~~~~~~~~~~lL 190 (262)
T KOG2497|consen 125 GLLLEEIILLSRDLSL---------EVRDSAPELNQAFLESKPETSQEFTDLLGGADVIYD-TELRHLLETLMTLL 190 (262)
T ss_pred HHHHHHHHhccccccc---------cccccchhHHHHHHhcCcccccchhhheeccCeeeh-hhhhHHHHHHHHHH
Confidence 3333333332221100 0011111222221111111 1234999999999999 77777787777754
No 234
>PRK00050 16S rRNA m(4)C1402 methyltranserfase; Provisional
Probab=97.76 E-value=8.1e-05 Score=62.18 Aligned_cols=45 Identities=11% Similarity=0.002 Sum_probs=38.2
Q ss_pred CCCCeEEEeCCCccHHHHHHHHhC---CEEEEecc-hhhHHHHHHHHHH
Q 027530 63 LKGKRVIELGAGCGVAGFGMALLG---CNVITTDQ-IEVLPLLKRNVEW 107 (222)
Q Consensus 63 ~~~~~vLelGcG~G~~~i~la~~g---~~v~~~D~-~~~l~~~~~n~~~ 107 (222)
.+|..+||.+||.|--+..+++.. .+|+++|. ++|++.+++++..
T Consensus 18 ~pg~~vlD~TlG~GGhS~~il~~~~~~g~VigiD~D~~al~~ak~~L~~ 66 (296)
T PRK00050 18 KPDGIYVDGTFGGGGHSRAILERLGPKGRLIAIDRDPDAIAAAKDRLKP 66 (296)
T ss_pred CCCCEEEEeCcCChHHHHHHHHhCCCCCEEEEEcCCHHHHHHHHHhhcc
Confidence 456799999999999999888774 57999999 6799999987753
No 235
>PF11968 DUF3321: Putative methyltransferase (DUF3321); InterPro: IPR021867 This family is conserved in fungi and is annotated as being a nucleolar protein.
Probab=97.72 E-value=0.00058 Score=54.07 Aligned_cols=133 Identities=17% Similarity=0.141 Sum_probs=80.5
Q ss_pred chHHHHHHHHhhhccCCCCCCCCCCCCeEEEeCCCccHHHHHHHHhC-CEEEEecchhhHHHHHHHHHHhhccccccCCC
Q 027530 40 DASVVFVKYLEKNCRKGRFCPSKLKGKRVIELGAGCGVAGFGMALLG-CNVITTDQIEVLPLLKRNVEWNTSRISQMNPG 118 (222)
Q Consensus 40 ~~~~~la~~l~~~~~~~~~~~~~~~~~~vLelGcG~G~~~i~la~~g-~~v~~~D~~~~l~~~~~n~~~n~~~~~~~~~~ 118 (222)
+++.++.+||....... .......++||+||=+....+. ..+ .+|+.+|+...
T Consensus 30 dSSK~lv~wL~~~~~~~---~~~~~~lrlLEVGals~~N~~s--~~~~fdvt~IDLns~--------------------- 83 (219)
T PF11968_consen 30 DSSKWLVEWLKELGVRP---KNGRPKLRLLEVGALSTDNACS--TSGWFDVTRIDLNSQ--------------------- 83 (219)
T ss_pred chhHHHHHHhhhhcccc---ccccccceEEeecccCCCCccc--ccCceeeEEeecCCC---------------------
Confidence 36899999998763211 0111225899999975433222 222 35999997320
Q ss_pred CCCCCCceEEEEeecCCCccccccCCCccEEEEeccccCccCH---HHHHHHHHHhcCCCeE-----EEEEEEE------
Q 027530 119 SGNLLGSIQAVELDWGNEDHIKAVAPPFDYIIGTDVVYAEHLL---EPLLQTIFALSGPKTT-----ILLGYEI------ 184 (222)
Q Consensus 119 ~~~~~~~v~~~~~d~~~~~~~~~~~~~fD~Ii~~d~~y~~~~~---~~ll~~~~~~l~~~g~-----~~l~~~~------ 184 (222)
.-.+.+.|+-+........++||+|.++-++-..+.. -..++.+.++|+|+|. ++++.+.
T Consensus 84 ------~~~I~qqDFm~rplp~~~~e~FdvIs~SLVLNfVP~p~~RG~Ml~r~~~fL~~~g~~~~~~LFlVlP~~Cv~NS 157 (219)
T PF11968_consen 84 ------HPGILQQDFMERPLPKNESEKFDVISLSLVLNFVPDPKQRGEMLRRAHKFLKPPGLSLFPSLFLVLPLPCVTNS 157 (219)
T ss_pred ------CCCceeeccccCCCCCCcccceeEEEEEEEEeeCCCHHHHHHHHHHHHHHhCCCCccCcceEEEEeCchHhhcc
Confidence 1122333443332222346789999999998776554 4488888999999999 8887764
Q ss_pred cChhHHHHHHHHHh-cCCeEEE
Q 027530 185 RSTSVHEQMLQMWK-SNFNVKL 205 (222)
Q Consensus 185 r~~~~~~~f~~~~~-~~~~v~~ 205 (222)
|+- ..+.|.+.+. -||....
T Consensus 158 Ry~-~~~~l~~im~~LGf~~~~ 178 (219)
T PF11968_consen 158 RYM-TEERLREIMESLGFTRVK 178 (219)
T ss_pred ccc-CHHHHHHHHHhCCcEEEE
Confidence 222 2455666554 3776543
No 236
>PF01234 NNMT_PNMT_TEMT: NNMT/PNMT/TEMT family; InterPro: IPR000940 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. Several cytoplasmic vertebrate methyltransferases are evolutionary related [], including nicotinamide N-methyltransferase (2.1.1.1 from EC) (NNMT); phenylethanolamine N-methyltransferase (2.1.1.28 from EC) (PNMT); and thioether S-methyltransferase (2.1.1.96 from EC) (TEMT). NNMT catalyzes the N-methylation of nicotinamide and other pyridines to form pyridinium ions. This activity is important for the biotransformation of many drugs and xenobiotic compounds. PNMT catalyzes the last step in catecholamine biosynthesis, the conversion of noradrenalin to adrenalin; and TEMT catalyzes the methylation of dimethyl sulphide into trimethylsulphonium. These three enzymes use S-adenosyl-L-methionine as the methyl donor. They are proteins of 30 to 32 kDa.; GO: 0008168 methyltransferase activity; PDB: 2IIP_C 3ROD_A 2OBF_A 3HCA_B 2ONY_B 3KR1_A 2OPB_B 3KQP_B 2AN4_B 3KQM_A ....
Probab=97.70 E-value=3e-05 Score=63.31 Aligned_cols=148 Identities=16% Similarity=0.253 Sum_probs=81.5
Q ss_pred CCCCCCCeEEEeCCCccHHHHHHHHhCC-EEEEecc-hhhHHHHHHHHHHhhc-cc-------cccCCCCCC-------C
Q 027530 60 PSKLKGKRVIELGAGCGVAGFGMALLGC-NVITTDQ-IEVLPLLKRNVEWNTS-RI-------SQMNPGSGN-------L 122 (222)
Q Consensus 60 ~~~~~~~~vLelGcG~G~~~i~la~~g~-~v~~~D~-~~~l~~~~~n~~~n~~-~~-------~~~~~~~~~-------~ 122 (222)
+...+|.++||+|||+-+.-+..|..-+ +++++|+ +...+.+++=++..+. .+ +...+.... .
T Consensus 52 ~g~~~g~~llDiGsGPtiy~~lsa~~~f~~I~l~dy~~~N~~el~kWl~~~~a~DWs~~~~~v~~lEg~~~~~~e~e~~l 131 (256)
T PF01234_consen 52 SGGVKGETLLDIGSGPTIYQLLSACEWFEEIVLSDYSEQNREELEKWLRKEGAFDWSPFWKYVCELEGKREKWEEKEEKL 131 (256)
T ss_dssp TSSS-EEEEEEES-TT--GGGTTGGGTEEEEEEEESSHHHHHHHHHHHTT-TS--THHHHHHHHHHTTSSSGHHHHHHHH
T ss_pred ccCcCCCEEEEeCCCcHHHhhhhHHHhhcceEEeeccHhhHHHHHHHHCCCCCCCccHHHHHHHhccCCcchhhhHHHHH
Confidence 4566888999999999776655554444 6999998 5566655543332211 11 111111110 0
Q ss_pred CCce-EEEEeecCCCccccc---cCCCccEEEEeccccC----ccCHHHHHHHHHHhcCCCeEEEEEEEEcCh-------
Q 027530 123 LGSI-QAVELDWGNEDHIKA---VAPPFDYIIGTDVVYA----EHLLEPLLQTIFALSGPKTTILLGYEIRST------- 187 (222)
Q Consensus 123 ~~~v-~~~~~d~~~~~~~~~---~~~~fD~Ii~~d~~y~----~~~~~~ll~~~~~~l~~~g~~~l~~~~r~~------- 187 (222)
...| .+...|..+...+.. .+++||+|++.-++-. .+.....++.+.++|||||.++++.-....
T Consensus 132 R~~Vk~Vv~cDV~~~~pl~~~~~~p~~~D~v~s~fcLE~a~~d~~~y~~al~ni~~lLkpGG~Lil~~~l~~t~Y~vG~~ 211 (256)
T PF01234_consen 132 RRAVKQVVPCDVTQPNPLDPPVVLPPKFDCVISSFCLESACKDLDEYRRALRNISSLLKPGGHLILAGVLGSTYYMVGGH 211 (256)
T ss_dssp HHHEEEEEE--TTSSSTTTTS-SS-SSEEEEEEESSHHHH-SSHHHHHHHHHHHHTTEEEEEEEEEEEESS-SEEEETTE
T ss_pred HHhhceEEEeeccCCCCCCccccCccchhhhhhhHHHHHHcCCHHHHHHHHHHHHHHcCCCcEEEEEEEcCceeEEECCE
Confidence 1123 355666665544433 2346999999877743 234566778888889999999987532221
Q ss_pred -----hHHHHHHH-HH-hcCCeEEEec
Q 027530 188 -----SVHEQMLQ-MW-KSNFNVKLVP 207 (222)
Q Consensus 188 -----~~~~~f~~-~~-~~~~~v~~v~ 207 (222)
...+++.+ .+ +.+|.+....
T Consensus 212 ~F~~l~l~ee~v~~al~~aG~~i~~~~ 238 (256)
T PF01234_consen 212 KFPCLPLNEEFVREALEEAGFDIEDLE 238 (256)
T ss_dssp EEE---B-HHHHHHHHHHTTEEEEEEE
T ss_pred ecccccCCHHHHHHHHHHcCCEEEecc
Confidence 12344443 34 4689887766
No 237
>PRK10742 putative methyltransferase; Provisional
Probab=97.65 E-value=0.00031 Score=56.90 Aligned_cols=83 Identities=18% Similarity=0.228 Sum_probs=55.8
Q ss_pred eEEEeCCCccHHHHHHHHhCCEEEEecc-hhhHHHHHHHHHHhhccccccCCCCCCCCCceEEEEeecCCCccccccCCC
Q 027530 67 RVIELGAGCGVAGFGMALLGCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSGNLLGSIQAVELDWGNEDHIKAVAPP 145 (222)
Q Consensus 67 ~vLelGcG~G~~~i~la~~g~~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~ 145 (222)
+|||+-+|+|..|+.++.+|++|+++|. +.+...+++|++...... +... ....++++...|..+.. ......
T Consensus 91 ~VLD~TAGlG~Da~~las~G~~V~~vEr~p~vaalL~dgL~ra~~~~-~~~~---~~~~ri~l~~~da~~~L--~~~~~~ 164 (250)
T PRK10742 91 DVVDATAGLGRDAFVLASVGCRVRMLERNPVVAALLDDGLARGYADA-EIGG---WLQERLQLIHASSLTAL--TDITPR 164 (250)
T ss_pred EEEECCCCccHHHHHHHHcCCEEEEEECCHHHHHHHHHHHHHhhhcc-ccch---hhhceEEEEeCcHHHHH--hhCCCC
Confidence 8999999999999999999999999998 568888899988742110 0000 01135666664433221 112347
Q ss_pred ccEEEEeccc
Q 027530 146 FDYIIGTDVV 155 (222)
Q Consensus 146 fD~Ii~~d~~ 155 (222)
||+|..-+++
T Consensus 165 fDVVYlDPMf 174 (250)
T PRK10742 165 PQVVYLDPMF 174 (250)
T ss_pred CcEEEECCCC
Confidence 9999965554
No 238
>COG0293 FtsJ 23S rRNA methylase [Translation, ribosomal structure and biogenesis]
Probab=97.63 E-value=0.0016 Score=51.29 Aligned_cols=116 Identities=17% Similarity=0.162 Sum_probs=73.3
Q ss_pred CCCCCeEEEeCCCccHHHHHHHHhCC---EEEEecchhhHHHHHHHHHHhhccccccCCCCCCCCCceEEEEeecCCCcc
Q 027530 62 KLKGKRVIELGAGCGVAGFGMALLGC---NVITTDQIEVLPLLKRNVEWNTSRISQMNPGSGNLLGSIQAVELDWGNEDH 138 (222)
Q Consensus 62 ~~~~~~vLelGcG~G~~~i~la~~g~---~v~~~D~~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~ 138 (222)
..++.+|+||||-.|-.+..+++... +|+++|+.++- ....|.+.+.|..+...
T Consensus 43 ~~~~~~ViDLGAAPGgWsQva~~~~~~~~~ivavDi~p~~-----------------------~~~~V~~iq~d~~~~~~ 99 (205)
T COG0293 43 FKPGMVVVDLGAAPGGWSQVAAKKLGAGGKIVAVDILPMK-----------------------PIPGVIFLQGDITDEDT 99 (205)
T ss_pred ecCCCEEEEcCCCCCcHHHHHHHHhCCCCcEEEEECcccc-----------------------cCCCceEEeeeccCccH
Confidence 34578999999999999999997643 39999974421 12346778877766543
Q ss_pred cc-----ccCCCccEEEEeccccC------------ccCHHHHHHHHHHhcCCCeEEEEEEEEcChhHHHHHHHHHhcCC
Q 027530 139 IK-----AVAPPFDYIIGTDVVYA------------EHLLEPLLQTIFALSGPKTTILLGYEIRSTSVHEQMLQMWKSNF 201 (222)
Q Consensus 139 ~~-----~~~~~fD~Ii~~d~~y~------------~~~~~~ll~~~~~~l~~~g~~~l~~~~r~~~~~~~f~~~~~~~~ 201 (222)
.. ....++|+|++- ..-. .......+.....+|+|+|.+++-.-. .. ....++..++..|
T Consensus 100 ~~~l~~~l~~~~~DvV~sD-~ap~~~g~~~~Dh~r~~~L~~~a~~~a~~vL~~~G~fv~K~fq-g~-~~~~~l~~~~~~F 176 (205)
T COG0293 100 LEKLLEALGGAPVDVVLSD-MAPNTSGNRSVDHARSMYLCELALEFALEVLKPGGSFVAKVFQ-GE-DFEDLLKALRRLF 176 (205)
T ss_pred HHHHHHHcCCCCcceEEec-CCCCcCCCccccHHHHHHHHHHHHHHHHHeeCCCCeEEEEEEe-CC-CHHHHHHHHHHhh
Confidence 21 123457999842 2211 011233555666679999998765433 22 2467777777666
Q ss_pred eE
Q 027530 202 NV 203 (222)
Q Consensus 202 ~v 203 (222)
..
T Consensus 177 ~~ 178 (205)
T COG0293 177 RK 178 (205)
T ss_pred ce
Confidence 44
No 239
>PF01269 Fibrillarin: Fibrillarin; InterPro: IPR000692 Fibrillarin is a component of a nucleolar small nuclear ribonucleoprotein (SnRNP), functioning in vivo in ribosomal RNA processing [, ]. It is associated with U3, U8 and U13 small nuclear RNAs in mammals [] and is similar to the yeast NOP1 protein []. Fibrillarin has a well conserved sequence of around 320 amino acids, and contains 3 domains, an N-terminal Gly/Arg-rich region; a central domain resembling other RNA-binding proteins and containing an RNP-2-like consensus sequence; and a C-terminal alpha-helical domain. An evolutionarily related pre-rRNA processing protein, which lacks the Gly/Arg-rich domain, has been found in various archaebacteria.; GO: 0003723 RNA binding, 0008168 methyltransferase activity, 0006364 rRNA processing, 0008033 tRNA processing; PDB: 3PLA_E 3ID6_C 3ID5_B 1NT2_A 3NVK_J 2NNW_B 3NVM_B 3NMU_J 1PRY_A 1G8A_A ....
Probab=97.63 E-value=0.0058 Score=48.73 Aligned_cols=160 Identities=15% Similarity=0.137 Sum_probs=88.2
Q ss_pred cccccccchHH-HHHHHHhhhccCCCCCCCCCCCCeEEEeCCCccHHHHHHHH-hC--CEEEEecc-hhhHHHHHHHHHH
Q 027530 33 HLGTTVWDASV-VFVKYLEKNCRKGRFCPSKLKGKRVIELGAGCGVAGFGMAL-LG--CNVITTDQ-IEVLPLLKRNVEW 107 (222)
Q Consensus 33 ~~g~~~W~~~~-~la~~l~~~~~~~~~~~~~~~~~~vLelGcG~G~~~i~la~-~g--~~v~~~D~-~~~l~~~~~n~~~ 107 (222)
....++|+.-. .||..+..... .-...+|.+||-||+.+|..---++- .| ..|++++. +...+.+-.-++.
T Consensus 45 ~~eYR~W~P~RSKLaAai~~Gl~----~~~ik~gskVLYLGAasGTTVSHvSDIvg~~G~VYaVEfs~r~~rdL~~la~~ 120 (229)
T PF01269_consen 45 KVEYRVWNPFRSKLAAAILKGLE----NIPIKPGSKVLYLGAASGTTVSHVSDIVGPDGVVYAVEFSPRSMRDLLNLAKK 120 (229)
T ss_dssp -EEEEEE-TTT-HHHHHHHTT-S------S--TT-EEEEETTTTSHHHHHHHHHHTTTSEEEEEESSHHHHHHHHHHHHH
T ss_pred ccceeecCchhhHHHHHHHcCcc----ccCCCCCCEEEEecccCCCccchhhhccCCCCcEEEEEecchhHHHHHHHhcc
Confidence 34667887432 45554443211 02455789999999999986555553 34 36999998 5444444322221
Q ss_pred hhccccccCCCCCCCCCceEEEEeecCCCccccccCCCccEEEEeccccCccCHHHHHHHHHHhcCCCeEEEEEEEEcCh
Q 027530 108 NTSRISQMNPGSGNLLGSIQAVELDWGNEDHIKAVAPPFDYIIGTDVVYAEHLLEPLLQTIFALSGPKTTILLGYEIRST 187 (222)
Q Consensus 108 n~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~fD~Ii~~d~~y~~~~~~~ll~~~~~~l~~~g~~~l~~~~r~~ 187 (222)
..||--+-.|...+..-...-+.+|+|++ |+- ..+...-++......||+||.++++.+.|+-
T Consensus 121 ---------------R~NIiPIl~DAr~P~~Y~~lv~~VDvI~~-DVa-Qp~Qa~I~~~Na~~fLk~gG~~~i~iKa~si 183 (229)
T PF01269_consen 121 ---------------RPNIIPILEDARHPEKYRMLVEMVDVIFQ-DVA-QPDQARIAALNARHFLKPGGHLIISIKARSI 183 (229)
T ss_dssp ---------------STTEEEEES-TTSGGGGTTTS--EEEEEE-E-S-STTHHHHHHHHHHHHEEEEEEEEEEEEHHHH
T ss_pred ---------------CCceeeeeccCCChHHhhcccccccEEEe-cCC-ChHHHHHHHHHHHhhccCCcEEEEEEecCcc
Confidence 12455455454444333333468898885 443 2445566778888899999999999887654
Q ss_pred h-------HHHHHHHHHhc-CCeE-EEecCCCCCc
Q 027530 188 S-------VHEQMLQMWKS-NFNV-KLVPKAKEST 213 (222)
Q Consensus 188 ~-------~~~~f~~~~~~-~~~v-~~v~~~~~~~ 213 (222)
+ ++..-.+.++. +|++ +.+.-+....
T Consensus 184 D~t~~p~~vf~~e~~~L~~~~~~~~e~i~LePy~~ 218 (229)
T PF01269_consen 184 DSTADPEEVFAEEVKKLKEEGFKPLEQITLEPYER 218 (229)
T ss_dssp -SSSSHHHHHHHHHHHHHCTTCEEEEEEE-TTTST
T ss_pred cCcCCHHHHHHHHHHHHHHcCCChheEeccCCCCC
Confidence 2 22333344443 7877 5555544433
No 240
>PHA01634 hypothetical protein
Probab=97.55 E-value=0.00018 Score=51.98 Aligned_cols=51 Identities=14% Similarity=0.240 Sum_probs=44.9
Q ss_pred CCCCCCCeEEEeCCCccHHHHHHHHhCCE-EEEecc-hhhHHHHHHHHHHhhc
Q 027530 60 PSKLKGKRVIELGAGCGVAGFGMALLGCN-VITTDQ-IEVLPLLKRNVEWNTS 110 (222)
Q Consensus 60 ~~~~~~~~vLelGcG~G~~~i~la~~g~~-v~~~D~-~~~l~~~~~n~~~n~~ 110 (222)
..++++++|+|+|++.|-.+|..+..||+ |++.+. +...+..++|++.|.+
T Consensus 24 ~idvk~KtV~dIGA~iGdSaiYF~l~GAK~Vva~E~~~kl~k~~een~k~nnI 76 (156)
T PHA01634 24 MLNVYQRTIQIVGADCGSSALYFLLRGASFVVQYEKEEKLRKKWEEVCAYFNI 76 (156)
T ss_pred heeecCCEEEEecCCccchhhHHhhcCccEEEEeccCHHHHHHHHHHhhhhee
Confidence 35679999999999999999999999995 999998 5588889999998864
No 241
>COG0421 SpeE Spermidine synthase [Amino acid transport and metabolism]
Probab=97.54 E-value=0.00075 Score=56.09 Aligned_cols=104 Identities=13% Similarity=0.042 Sum_probs=70.9
Q ss_pred CeEEEeCCCccHHHHHHHHhC--CEEEEecc-hhhHHHHHHHHHHhhccccccCCCCCCCCCceEEEEeecCCCcccccc
Q 027530 66 KRVIELGAGCGVAGFGMALLG--CNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSGNLLGSIQAVELDWGNEDHIKAV 142 (222)
Q Consensus 66 ~~vLelGcG~G~~~i~la~~g--~~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~ 142 (222)
++||-||-|.|...-.+.+.. .+++.+|+ +++++.+++=+..-... ...+++++...|-.+. ....
T Consensus 78 k~VLiiGgGdG~tlRevlkh~~ve~i~~VEID~~Vi~~ar~~l~~~~~~---------~~dpRv~i~i~Dg~~~--v~~~ 146 (282)
T COG0421 78 KRVLIIGGGDGGTLREVLKHLPVERITMVEIDPAVIELARKYLPEPSGG---------ADDPRVEIIIDDGVEF--LRDC 146 (282)
T ss_pred CeEEEECCCccHHHHHHHhcCCcceEEEEEcCHHHHHHHHHhccCcccc---------cCCCceEEEeccHHHH--HHhC
Confidence 699999999999999888876 47999999 66999998865532210 1135777776443222 1122
Q ss_pred CCCccEEEEeccccCcc-----CHHHHHHHHHHhcCCCeEEEEE
Q 027530 143 APPFDYIIGTDVVYAEH-----LLEPLLQTIFALSGPKTTILLG 181 (222)
Q Consensus 143 ~~~fD~Ii~~d~~y~~~-----~~~~ll~~~~~~l~~~g~~~l~ 181 (222)
..+||+||.. +.-... .-..+.+.+++.|+++|++..-
T Consensus 147 ~~~fDvIi~D-~tdp~gp~~~Lft~eFy~~~~~~L~~~Gi~v~q 189 (282)
T COG0421 147 EEKFDVIIVD-STDPVGPAEALFTEEFYEGCRRALKEDGIFVAQ 189 (282)
T ss_pred CCcCCEEEEc-CCCCCCcccccCCHHHHHHHHHhcCCCcEEEEe
Confidence 3489999964 221111 1367999999999999987654
No 242
>PF03059 NAS: Nicotianamine synthase protein; InterPro: IPR004298 Nicotianamine synthase 2.5.1.43 from EC catalyzes the trimerization of S-adenosylmethionine to yield one molecule of nicotianamine. Nicotianamine has an important role in plant iron uptake mechanisms. Plants adopt two strategies (termed I and II) of iron acquisition. Strategy I is adopted by all higher plants except graminaceous plants, which adopt strategy II [, ]. In strategy I plants, the role of nicotianamine is not fully determined: possible roles include the formation of more stable complexes with ferrous than with ferric ion, which might serve as a sensor of the physiological status of iron within a plant, or which might be involved in the transport of iron []. In strategy II (graminaceous) plants, nicotianamine is the key intermediate (and nicotianamine synthase the key enzyme) in the synthesis of the mugineic family (the only known family in plants) of phytosiderophores. Phytosiderophores are iron chelators whose secretion by the roots is greatly increased in instances of iron deficiency []. The 3D structures of five example NAS from Methanothermobacter thermautotrophicus reveal the monomer to consist of a five-helical bundle N-terminal domain on top of a classic Rossmann fold C-terminal domain. The N-terminal domain is unique to the NAS family, whereas the C-terminal domain is homologous to the class I family of SAM-dependent methyltransferases. An active site is created at the interface of the two domains, at the rim of a large cavity that corresponds to the nucleotide binding site such as is found in other proteins adopting a Rossmann fold [].; GO: 0030410 nicotianamine synthase activity, 0030418 nicotianamine biosynthetic process; PDB: 3O31_B 3FPH_A 3FPJ_A 3FPE_B 3FPF_B 3FPG_B.
Probab=97.53 E-value=0.0015 Score=53.92 Aligned_cols=101 Identities=18% Similarity=0.141 Sum_probs=61.1
Q ss_pred CeEEEeCCCc-cHHHHHHHHh---CCEEEEecc-hhhHHHHHHHHH-HhhccccccCCCCCCCCCceEEEEeecCCCccc
Q 027530 66 KRVIELGAGC-GVAGFGMALL---GCNVITTDQ-IEVLPLLKRNVE-WNTSRISQMNPGSGNLLGSIQAVELDWGNEDHI 139 (222)
Q Consensus 66 ~~vLelGcG~-G~~~i~la~~---g~~v~~~D~-~~~l~~~~~n~~-~n~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~ 139 (222)
++|+=||||. -+.++.+++. ++.|+++|+ +++++.+++-+. ..++ ..++++...|..+.
T Consensus 122 ~rVaFIGSGPLPlT~i~la~~~~~~~~v~~iD~d~~A~~~a~~lv~~~~~L------------~~~m~f~~~d~~~~--- 186 (276)
T PF03059_consen 122 SRVAFIGSGPLPLTSIVLAKQHGPGARVHNIDIDPEANELARRLVASDLGL------------SKRMSFITADVLDV--- 186 (276)
T ss_dssp -EEEEE---SS-HHHHHHH--HTT--EEEEEESSHHHHHHHHHHHH---HH-------------SSEEEEES-GGGG---
T ss_pred ceEEEEcCCCcchHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHhhcccc------------cCCeEEEecchhcc---
Confidence 5999999997 8888888864 457999999 679999987666 3343 35788888554332
Q ss_pred cccCCCccEEEEecccc-CccCHHHHHHHHHHhcCCCeEEEEE
Q 027530 140 KAVAPPFDYIIGTDVVY-AEHLLEPLLQTIFALSGPKTTILLG 181 (222)
Q Consensus 140 ~~~~~~fD~Ii~~d~~y-~~~~~~~ll~~~~~~l~~~g~~~l~ 181 (222)
...-..||+|+.+-.+. ....-..++..+.+.++||..+++=
T Consensus 187 ~~dl~~~DvV~lAalVg~~~e~K~~Il~~l~~~m~~ga~l~~R 229 (276)
T PF03059_consen 187 TYDLKEYDVVFLAALVGMDAEPKEEILEHLAKHMAPGARLVVR 229 (276)
T ss_dssp -GG----SEEEE-TT-S----SHHHHHHHHHHHS-TTSEEEEE
T ss_pred ccccccCCEEEEhhhcccccchHHHHHHHHHhhCCCCcEEEEe
Confidence 22236899998776665 3456778999999999999987773
No 243
>KOG2730 consensus Methylase [General function prediction only]
Probab=97.50 E-value=6.9e-05 Score=59.16 Aligned_cols=80 Identities=19% Similarity=0.152 Sum_probs=64.4
Q ss_pred CCCeEEEeCCCccHHHHHHHHhCCEEEEecc-hhhHHHHHHHHHHhhccccccCCCCCCCCCceEEEEeecCCCcc-ccc
Q 027530 64 KGKRVIELGAGCGVAGFGMALLGCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSGNLLGSIQAVELDWGNEDH-IKA 141 (222)
Q Consensus 64 ~~~~vLelGcG~G~~~i~la~~g~~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~-~~~ 141 (222)
.-..|+|.-||.|-..+..|..++.|+++|+ +.-+..|+.|++--|++ ++|++.++||-+... +..
T Consensus 94 ~~~~iidaf~g~gGntiqfa~~~~~VisIdiDPikIa~AkhNaeiYGI~------------~rItFI~GD~ld~~~~lq~ 161 (263)
T KOG2730|consen 94 NAEVIVDAFCGVGGNTIQFALQGPYVIAIDIDPVKIACARHNAEVYGVP------------DRITFICGDFLDLASKLKA 161 (263)
T ss_pred CcchhhhhhhcCCchHHHHHHhCCeEEEEeccHHHHHHHhccceeecCC------------ceeEEEechHHHHHHHHhh
Confidence 3457999999999999999999999999999 66899999999998865 499999999876532 223
Q ss_pred cCCCccEEEEeccc
Q 027530 142 VAPPFDYIIGTDVV 155 (222)
Q Consensus 142 ~~~~fD~Ii~~d~~ 155 (222)
....+|.|+.+++-
T Consensus 162 ~K~~~~~vf~sppw 175 (263)
T KOG2730|consen 162 DKIKYDCVFLSPPW 175 (263)
T ss_pred hhheeeeeecCCCC
Confidence 34457788877654
No 244
>COG2384 Predicted SAM-dependent methyltransferase [General function prediction only]
Probab=97.48 E-value=0.0048 Score=48.95 Aligned_cols=114 Identities=15% Similarity=0.073 Sum_probs=78.7
Q ss_pred CCCeEEEeCCCccHHHHHHHHhCC--EEEEecc-hhhHHHHHHHHHHhhccccccCCCCCCCCCceEEEEeecCCCcccc
Q 027530 64 KGKRVIELGAGCGVAGFGMALLGC--NVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSGNLLGSIQAVELDWGNEDHIK 140 (222)
Q Consensus 64 ~~~~vLelGcG~G~~~i~la~~g~--~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~ 140 (222)
.+.++.|+||=.|.+++++.+.+. .+++.|+ +-.++.+.+|+..+++. +++++..+|- ...-
T Consensus 16 ~~~~iaDIGsDHAYLp~~Lv~~~~~~~~va~eV~~gpl~~a~~~v~~~~l~------------~~i~vr~~dg---l~~l 80 (226)
T COG2384 16 QGARIADIGSDHAYLPIYLVKNNPASTAVAGEVVPGPLESAIRNVKKNNLS------------ERIDVRLGDG---LAVL 80 (226)
T ss_pred cCCceeeccCchhHhHHHHHhcCCcceEEEeecccCHHHHHHHHHHhcCCc------------ceEEEeccCC---cccc
Confidence 345699999999999999998875 5999998 55999999999998753 6788877553 2111
Q ss_pred ccCCCccEEEEeccccCccCHHHHHHHHHHhcCCCeEEEEEEEEcChhHHHHHHH
Q 027530 141 AVAPPFDYIIGTDVVYAEHLLEPLLQTIFALSGPKTTILLGYEIRSTSVHEQMLQ 195 (222)
Q Consensus 141 ~~~~~fD~Ii~~d~~y~~~~~~~ll~~~~~~l~~~g~~~l~~~~r~~~~~~~f~~ 195 (222)
..+..+|+|+-+.+- -..+..++..-...|+.--++++ .+.-+....++|+.
T Consensus 81 ~~~d~~d~ivIAGMG--G~lI~~ILee~~~~l~~~~rlIL-QPn~~~~~LR~~L~ 132 (226)
T COG2384 81 ELEDEIDVIVIAGMG--GTLIREILEEGKEKLKGVERLIL-QPNIHTYELREWLS 132 (226)
T ss_pred CccCCcCEEEEeCCc--HHHHHHHHHHhhhhhcCcceEEE-CCCCCHHHHHHHHH
Confidence 234579998877664 44566677776776764445444 44444444555554
No 245
>PF13679 Methyltransf_32: Methyltransferase domain
Probab=97.48 E-value=0.00036 Score=51.96 Aligned_cols=47 Identities=17% Similarity=0.188 Sum_probs=37.6
Q ss_pred CCCCeEEEeCCCccHHHHHHHH-----h-CCEEEEecc-hhhHHHHHHHHHHhh
Q 027530 63 LKGKRVIELGAGCGVAGFGMAL-----L-GCNVITTDQ-IEVLPLLKRNVEWNT 109 (222)
Q Consensus 63 ~~~~~vLelGcG~G~~~i~la~-----~-g~~v~~~D~-~~~l~~~~~n~~~n~ 109 (222)
.+..+|+|+|||.|.+|..++. . +.+|+++|. ++.++.+.+..+...
T Consensus 24 ~~~~~vvD~GsG~GyLs~~La~~l~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~ 77 (141)
T PF13679_consen 24 KRCITVVDLGSGKGYLSRALAHLLCNSSPNLRVLGIDCNESLVESAQKRAQKLG 77 (141)
T ss_pred CCCCEEEEeCCChhHHHHHHHHHHHhcCCCCeEEEEECCcHHHHHHHHHHHHhc
Confidence 4567899999999999999998 3 558999998 557777777666544
No 246
>PF09243 Rsm22: Mitochondrial small ribosomal subunit Rsm22; InterPro: IPR015324 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. Rsm22 has been identified as a mitochondrial small ribosomal subunit [] and is a methyltransferase. In Schizosaccharomyces pombe (Fission yeast), Rsm22 is tandemly fused to Cox11 (a factor required for copper insertion into cytochrome oxidase) and the two proteins are proteolytically cleaved after import into the mitochondria []. This entry consists of mitochondrial Rsm22 and homologous sequences from bacteria.; GO: 0008168 methyltransferase activity, 0006412 translation
Probab=97.37 E-value=0.0042 Score=51.57 Aligned_cols=105 Identities=19% Similarity=0.258 Sum_probs=60.3
Q ss_pred CCCCCCeEEEeCCCccHHHHHHHHh-C--CEEEEecc-hhhHHHHHHHHHHhhccccccCCCCCCCCCceEEEEeecCCC
Q 027530 61 SKLKGKRVIELGAGCGVAGFGMALL-G--CNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSGNLLGSIQAVELDWGNE 136 (222)
Q Consensus 61 ~~~~~~~vLelGcG~G~~~i~la~~-g--~~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~v~~~~~d~~~~ 136 (222)
..+.-++|||+|||+|....++... + .+++++|. +.|++.++.-++ +... .... .|...
T Consensus 30 p~f~P~~vLD~GsGpGta~wAa~~~~~~~~~~~~vd~s~~~~~l~~~l~~-~~~~-----------~~~~-----~~~~~ 92 (274)
T PF09243_consen 30 PDFRPRSVLDFGSGPGTALWAAREVWPSLKEYTCVDRSPEMLELAKRLLR-AGPN-----------NRNA-----EWRRV 92 (274)
T ss_pred cCCCCceEEEecCChHHHHHHHHHHhcCceeeeeecCCHHHHHHHHHHHh-cccc-----------cccc-----hhhhh
Confidence 3567789999999999766555543 2 25999998 458887776443 2211 0000 01110
Q ss_pred ccc-cccCCCccEEEEeccccCccC--HHHHHHHHHHhcCCCeEEEEEEEE
Q 027530 137 DHI-KAVAPPFDYIIGTDVVYAEHL--LEPLLQTIFALSGPKTTILLGYEI 184 (222)
Q Consensus 137 ~~~-~~~~~~fD~Ii~~d~~y~~~~--~~~ll~~~~~~l~~~g~~~l~~~~ 184 (222)
... ...-...|+|+++.++-.... ...+++.+...+++ .++|+.+.
T Consensus 93 ~~~~~~~~~~~DLvi~s~~L~EL~~~~r~~lv~~LW~~~~~--~LVlVEpG 141 (274)
T PF09243_consen 93 LYRDFLPFPPDDLVIASYVLNELPSAARAELVRSLWNKTAP--VLVLVEPG 141 (274)
T ss_pred hhcccccCCCCcEEEEehhhhcCCchHHHHHHHHHHHhccC--cEEEEcCC
Confidence 000 001223499999999876444 34456666555655 56565543
No 247
>TIGR03439 methyl_EasF probable methyltransferase domain, EasF family. This model represents an uncharacterized domain of about 300 amino acids with homology to S-adenosylmethionine-dependent methyltransferases. Proteins with this domain are exclusively fungal. A few, such as EasF from Neotyphodium lolii, are associated with the biosynthesis of ergot alkaloids, a class of fungal secondary metabolites. EasF may, in fact, be the AdoMet:dimethylallyltryptophan N-methyltransferase, the enzyme that follows tryptophan dimethylallyltransferase (DMATS) in ergot alkaloid biosynthesis. Several other members of this family, including mug158 (meiotically up-regulated gene 158 protein) from Schizosaccharomyces pombe, contain an additional uncharacterized domain DUF323 (pfam03781).
Probab=97.36 E-value=0.0017 Score=54.88 Aligned_cols=107 Identities=15% Similarity=0.187 Sum_probs=67.3
Q ss_pred CCCeEEEeCCCccHH-HHHHHHh-----CCEEEEecch-hhHHHHHHHHHHhhccccccCCCCCCCCCceEE--EEeecC
Q 027530 64 KGKRVIELGAGCGVA-GFGMALL-----GCNVITTDQI-EVLPLLKRNVEWNTSRISQMNPGSGNLLGSIQA--VELDWG 134 (222)
Q Consensus 64 ~~~~vLelGcG~G~~-~i~la~~-----g~~v~~~D~~-~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~v~~--~~~d~~ 134 (222)
++..++|||||.|.= .+.|..+ ...++.+|++ ++++.+.+++.... .+.+.+ ...|+.
T Consensus 76 ~~~~lIELGsG~~~Kt~~LL~aL~~~~~~~~Y~plDIS~~~L~~a~~~L~~~~-------------~p~l~v~~l~gdy~ 142 (319)
T TIGR03439 76 SGSMLVELGSGNLRKVGILLEALERQKKSVDYYALDVSRSELQRTLAELPLGN-------------FSHVRCAGLLGTYD 142 (319)
T ss_pred CCCEEEEECCCchHHHHHHHHHHHhcCCCceEEEEECCHHHHHHHHHhhhhcc-------------CCCeEEEEEEecHH
Confidence 456899999999974 3333322 3469999995 58988888887222 123444 555554
Q ss_pred CCcc-ccc--cCCCccEEEEec-cccC--ccCHHHHHHHHHH-hcCCCeEEEEEEE
Q 027530 135 NEDH-IKA--VAPPFDYIIGTD-VVYA--EHLLEPLLQTIFA-LSGPKTTILLGYE 183 (222)
Q Consensus 135 ~~~~-~~~--~~~~fD~Ii~~d-~~y~--~~~~~~ll~~~~~-~l~~~g~~~l~~~ 183 (222)
+... ++. ......+++... .+-+ ......+++.+.+ .|+|++.++++.-
T Consensus 143 ~~l~~l~~~~~~~~~r~~~flGSsiGNf~~~ea~~fL~~~~~~~l~~~d~lLiG~D 198 (319)
T TIGR03439 143 DGLAWLKRPENRSRPTTILWLGSSIGNFSRPEAAAFLAGFLATALSPSDSFLIGLD 198 (319)
T ss_pred HHHhhcccccccCCccEEEEeCccccCCCHHHHHHHHHHHHHhhCCCCCEEEEecC
Confidence 3321 111 123456666544 4433 3445679999999 9999999998754
No 248
>KOG2915 consensus tRNA(1-methyladenosine) methyltransferase, subunit GCD14 [Translation, ribosomal structure and biogenesis]
Probab=97.36 E-value=0.012 Score=48.19 Aligned_cols=105 Identities=10% Similarity=-0.015 Sum_probs=71.2
Q ss_pred CCCCCCeEEEeCCCccHHHHHHHHhC---CEEEEecc-hhhHHHHHHHHHHhhccccccCCCCCCCCCceEEEEeecCCC
Q 027530 61 SKLKGKRVIELGAGCGVAGFGMALLG---CNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSGNLLGSIQAVELDWGNE 136 (222)
Q Consensus 61 ~~~~~~~vLelGcG~G~~~i~la~~g---~~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~v~~~~~d~~~~ 136 (222)
...+|.+|||-|+|+|-++.++++.- .+++-.|+ ..-.+.+.+-.+..++ .+++++..-|....
T Consensus 102 ~i~PGsvV~EsGTGSGSlShaiaraV~ptGhl~tfefH~~Ra~ka~eeFr~hgi------------~~~vt~~hrDVc~~ 169 (314)
T KOG2915|consen 102 EIRPGSVVLESGTGSGSLSHAIARAVAPTGHLYTFEFHETRAEKALEEFREHGI------------GDNVTVTHRDVCGS 169 (314)
T ss_pred cCCCCCEEEecCCCcchHHHHHHHhhCcCcceEEEEecHHHHHHHHHHHHHhCC------------CcceEEEEeecccC
Confidence 45589999999999999999999874 36888998 4456667777777764 47889988777654
Q ss_pred ccccccCCCccEEEEeccccCccCHHHHHHHHHHhcCCCeEEEEEEE
Q 027530 137 DHIKAVAPPFDYIIGTDVVYAEHLLEPLLQTIFALSGPKTTILLGYE 183 (222)
Q Consensus 137 ~~~~~~~~~fD~Ii~~d~~y~~~~~~~ll~~~~~~l~~~g~~~l~~~ 183 (222)
-... ....+|.|+.. .......+..+..+|+.+|.-+.+..
T Consensus 170 GF~~-ks~~aDaVFLD-----lPaPw~AiPha~~~lk~~g~r~csFS 210 (314)
T KOG2915|consen 170 GFLI-KSLKADAVFLD-----LPAPWEAIPHAAKILKDEGGRLCSFS 210 (314)
T ss_pred Cccc-cccccceEEEc-----CCChhhhhhhhHHHhhhcCceEEecc
Confidence 2211 14578877753 22333445555667777775444443
No 249
>PF01189 Nol1_Nop2_Fmu: NOL1/NOP2/sun family; InterPro: IPR001678 This domain is found in archaeal, bacterial and eukaryotic proteins. In the archaea and bacteria, they are annotated as putative nucleolar protein, Sun (Fmu) family protein or tRNA/rRNA cytosine-C5-methylase. The majority have the S-adenosyl methionine (SAM) binding domain and are related to Escherichia coli Fmu (Sun) protein (16S rRNA m5C 967 methyltransferase) whose structure has been determined []. In the eukaryota, the majority are annotated as being 'hypothetical protein', nucleolar protein or the Nop2/Sun (Fmu) family. Unlike their bacterial homologues, few of the eukaryotic members in this family have a the SAM binding signature. Despite this, Saccharomyces cerevisiae (Baker's yeast) Nop2p is a probable RNA m5C methyltransferase []. It is essential for processing and maturation of 27S pre-rRNA and large ribosomal subunit biogenesis []; localized to the nucleolus and is essential for viability []. Reduced Nop2p expression limits yeast growth and decreases levels of mature 60S ribosomal subunits while altering rRNA processing []. There is substantial identity between Nop2p and Homo sapiens (Human) p120 (NOL1), which is also called the proliferation-associated nucleolar antigen [, ].; PDB: 3M4X_A 2FRX_B 2YXL_A 1IXK_A 1SQG_A 1SQF_A 3M6U_B 3M6V_B 3M6W_A 3M6X_A ....
Probab=97.34 E-value=0.0027 Score=52.96 Aligned_cols=145 Identities=21% Similarity=0.234 Sum_probs=90.8
Q ss_pred ccchHHHHHHHHhhhccCCCCCCCCCCCCeEEEeCCCccHHHHHHHHhC---CEEEEecc-hhhHHHHHHHHHHhhcccc
Q 027530 38 VWDASVVFVKYLEKNCRKGRFCPSKLKGKRVIELGAGCGVAGFGMALLG---CNVITTDQ-IEVLPLLKRNVEWNTSRIS 113 (222)
Q Consensus 38 ~W~~~~~la~~l~~~~~~~~~~~~~~~~~~vLelGcG~G~~~i~la~~g---~~v~~~D~-~~~l~~~~~n~~~n~~~~~ 113 (222)
+++.+-.++..+.. ..+|.+|||++|+.|-=+..++.+- ..|++.|+ .+-+..+++|+++.+..
T Consensus 69 vQd~sS~l~~~~L~----------~~~~~~VLD~CAapGgKt~~la~~~~~~g~i~A~D~~~~Rl~~l~~~~~r~g~~-- 136 (283)
T PF01189_consen 69 VQDESSQLVALALD----------PQPGERVLDMCAAPGGKTTHLAELMGNKGEIVANDISPKRLKRLKENLKRLGVF-- 136 (283)
T ss_dssp EHHHHHHHHHHHHT----------TTTTSEEEESSCTTSHHHHHHHHHTTTTSEEEEEESSHHHHHHHHHHHHHTT-S--
T ss_pred eccccccccccccc----------ccccccccccccCCCCceeeeeecccchhHHHHhccCHHHHHHHHHHHHhcCCc--
Confidence 55555555555542 3477889999999998777777652 47999998 66899999999987743
Q ss_pred ccCCCCCCCCCceEEEEeecCCCccccccCCCccEEEEecc------ccCcc----------------CHHHHHHHHHHh
Q 027530 114 QMNPGSGNLLGSIQAVELDWGNEDHIKAVAPPFDYIIGTDV------VYAEH----------------LLEPLLQTIFAL 171 (222)
Q Consensus 114 ~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~fD~Ii~~d~------~y~~~----------------~~~~ll~~~~~~ 171 (222)
++.+...|...... ......||.|+.-.+ +.... ....+++...++
T Consensus 137 -----------~v~~~~~D~~~~~~-~~~~~~fd~VlvDaPCSg~G~i~r~p~~~~~~~~~~~~~l~~~Q~~iL~~a~~~ 204 (283)
T PF01189_consen 137 -----------NVIVINADARKLDP-KKPESKFDRVLVDAPCSGLGTIRRNPDIKWRRSPEDIEKLAELQREILDNAAKL 204 (283)
T ss_dssp -----------SEEEEESHHHHHHH-HHHTTTEEEEEEECSCCCGGGTTTCTTHHHHE-TTHHHHHHHHHHHHHHHHHHC
T ss_pred -----------eEEEEeeccccccc-cccccccchhhcCCCccchhhhhhccchhhcccccccchHHHHHHHHHHHHHHh
Confidence 56666533222111 112346999986322 11111 134588888889
Q ss_pred c----CCCeEEEEEE----EEcChhHHHHHHHHHhcCCeEEEec
Q 027530 172 S----GPKTTILLGY----EIRSTSVHEQMLQMWKSNFNVKLVP 207 (222)
Q Consensus 172 l----~~~g~~~l~~----~~r~~~~~~~f~~~~~~~~~v~~v~ 207 (222)
+ +|||+++.++ +.-+..+.+.|++.- ..|++..++
T Consensus 205 ~~~~~k~gG~lvYsTCS~~~eENE~vV~~fl~~~-~~~~l~~~~ 247 (283)
T PF01189_consen 205 LNIDFKPGGRLVYSTCSLSPEENEEVVEKFLKRH-PDFELVPIP 247 (283)
T ss_dssp EHHHBEEEEEEEEEESHHHGGGTHHHHHHHHHHS-TSEEEECCE
T ss_pred hcccccCCCeEEEEeccHHHHHHHHHHHHHHHhC-CCcEEEecc
Confidence 9 9999887665 223344566676642 245544433
No 250
>KOG1269 consensus SAM-dependent methyltransferases [Lipid transport and metabolism; General function prediction only]
Probab=97.13 E-value=0.0019 Score=55.52 Aligned_cols=104 Identities=17% Similarity=0.138 Sum_probs=73.4
Q ss_pred CCCCCCeEEEeCCCccHHHHHHHHhC-CEEEEecc-hhhHHHHHH-HHHHhhccccccCCCCCCCCCceEEEEeecCCCc
Q 027530 61 SKLKGKRVIELGAGCGVAGFGMALLG-CNVITTDQ-IEVLPLLKR-NVEWNTSRISQMNPGSGNLLGSIQAVELDWGNED 137 (222)
Q Consensus 61 ~~~~~~~vLelGcG~G~~~i~la~~g-~~v~~~D~-~~~l~~~~~-n~~~n~~~~~~~~~~~~~~~~~v~~~~~d~~~~~ 137 (222)
..+++..++|+|||.|-+....+..+ +++++.|. +.-+..... +.... + ..+..+.. .| .-
T Consensus 107 ~~~~~~~~~~~~~g~~~~~~~i~~f~~~~~~Gl~~n~~e~~~~~~~~~~~~-l------------~~k~~~~~-~~--~~ 170 (364)
T KOG1269|consen 107 SCFPGSKVLDVGTGVGGPSRYIAVFKKAGVVGLDNNAYEAFRANELAKKAY-L------------DNKCNFVV-AD--FG 170 (364)
T ss_pred cCcccccccccCcCcCchhHHHHHhccCCccCCCcCHHHHHHHHHHHHHHH-h------------hhhcceeh-hh--hh
Confidence 34566689999999999998888765 67999997 433333222 22221 1 11223322 22 23
Q ss_pred cccccCCCccEEEEeccccCccCHHHHHHHHHHhcCCCeEEEE
Q 027530 138 HIKAVAPPFDYIIGTDVVYAEHLLEPLLQTIFALSGPKTTILL 180 (222)
Q Consensus 138 ~~~~~~~~fD~Ii~~d~~y~~~~~~~ll~~~~~~l~~~g~~~l 180 (222)
..++.+..||.+-+.+..-+......+++.+.+.++|||..+.
T Consensus 171 ~~~fedn~fd~v~~ld~~~~~~~~~~~y~Ei~rv~kpGG~~i~ 213 (364)
T KOG1269|consen 171 KMPFEDNTFDGVRFLEVVCHAPDLEKVYAEIYRVLKPGGLFIV 213 (364)
T ss_pred cCCCCccccCcEEEEeecccCCcHHHHHHHHhcccCCCceEEe
Confidence 3345678999999999999999999999999999999998765
No 251
>PF06962 rRNA_methylase: Putative rRNA methylase; InterPro: IPR010719 This family contains a number of putative rRNA methylases.; PDB: 3EEY_H 3LBY_A 3MTI_A.
Probab=97.12 E-value=0.0068 Score=44.93 Aligned_cols=104 Identities=19% Similarity=0.140 Sum_probs=61.4
Q ss_pred EEEEecc-hhhHHHHHHHHHHhhccccccCCCCCCCCCceEEEEeecCCCccccccC-CCccEEEEeccccCcc------
Q 027530 88 NVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSGNLLGSIQAVELDWGNEDHIKAVA-PPFDYIIGTDVVYAEH------ 159 (222)
Q Consensus 88 ~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~-~~fD~Ii~~d~~y~~~------ 159 (222)
+|++.|+ +++++.+++.++.++.. .++++..-....... ..+ +++|.++.| .-|-+.
T Consensus 1 kVyaFDIQ~~Ai~~T~~rL~~~~~~------------~~v~li~~sHe~l~~--~i~~~~v~~~iFN-LGYLPggDk~i~ 65 (140)
T PF06962_consen 1 KVYAFDIQEEAIENTRERLEEAGLE------------DRVTLILDSHENLDE--YIPEGPVDAAIFN-LGYLPGGDKSIT 65 (140)
T ss_dssp EEEEEES-HHHHHHHHHHHHHTT-G------------SGEEEEES-GGGGGG--T--S--EEEEEEE-ESB-CTS-TTSB
T ss_pred CEEEEECHHHHHHHHHHHHHhcCCC------------CcEEEEECCHHHHHh--hCccCCcCEEEEE-CCcCCCCCCCCC
Confidence 5899998 67999999999988753 478887644443322 123 489999876 333321
Q ss_pred -CHHH---HHHHHHHhcCCCeEEEEEEEEcChh------HHHHHHHHHh-cCCeEEEe
Q 027530 160 -LLEP---LLQTIFALSGPKTTILLGYEIRSTS------VHEQMLQMWK-SNFNVKLV 206 (222)
Q Consensus 160 -~~~~---ll~~~~~~l~~~g~~~l~~~~r~~~------~~~~f~~~~~-~~~~v~~v 206 (222)
..+. .++.+.++|+|||.+.++....++. ....|++.+. ..|.|...
T Consensus 66 T~~~TTl~Al~~al~lL~~gG~i~iv~Y~GH~gG~eE~~av~~~~~~L~~~~~~V~~~ 123 (140)
T PF06962_consen 66 TKPETTLKALEAALELLKPGGIITIVVYPGHPGGKEESEAVEEFLASLDQKEFNVLKY 123 (140)
T ss_dssp --HHHHHHHHHHHHHHEEEEEEEEEEE--STCHHHHHHHHHHHHHHTS-TTTEEEEEE
T ss_pred cCcHHHHHHHHHHHHhhccCCEEEEEEeCCCCCCHHHHHHHHHHHHhCCcceEEEEEE
Confidence 1233 4555566789999998877664442 2345555553 46776443
No 252
>PF13578 Methyltransf_24: Methyltransferase domain; PDB: 3SSO_A 3SSN_C 3SSM_D.
Probab=97.02 E-value=0.00021 Score=50.34 Aligned_cols=98 Identities=13% Similarity=0.081 Sum_probs=36.3
Q ss_pred EEeCCCccHHHHHHHHh----C-CEEEEecchhhHHHHHHHHHHhhccccccCCCCCCCCCceEEEEeecCCCccccccC
Q 027530 69 IELGAGCGVAGFGMALL----G-CNVITTDQIEVLPLLKRNVEWNTSRISQMNPGSGNLLGSIQAVELDWGNEDHIKAVA 143 (222)
Q Consensus 69 LelGcG~G~~~i~la~~----g-~~v~~~D~~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~ 143 (222)
||+|+..|..++.+++. + .+++++|.....+..++++++.+. ..++++...+-.+... ....
T Consensus 1 lEiG~~~G~st~~l~~~~~~~~~~~~~~vD~~~~~~~~~~~~~~~~~------------~~~~~~~~g~s~~~l~-~~~~ 67 (106)
T PF13578_consen 1 LEIGTYSGYSTLWLASALRDNGRGKLYSVDPFPGDEQAQEIIKKAGL------------SDRVEFIQGDSPDFLP-SLPD 67 (106)
T ss_dssp --------------------------EEEESS------------GGG-------------BTEEEEES-THHHHH-HHHH
T ss_pred CccccccccccccccccccccccCCEEEEECCCcccccchhhhhcCC------------CCeEEEEEcCcHHHHH-HcCC
Confidence 79999999888776653 2 269999973323344455544332 2467887744322111 1114
Q ss_pred CCccEEEEeccccCccCHHHHHHHHHHhcCCCeEEEE
Q 027530 144 PPFDYIIGTDVVYAEHLLEPLLQTIFALSGPKTTILL 180 (222)
Q Consensus 144 ~~fD~Ii~~d~~y~~~~~~~ll~~~~~~l~~~g~~~l 180 (222)
.+||+|+.-. -+..+....-+..+...|+|||.+++
T Consensus 68 ~~~dli~iDg-~H~~~~~~~dl~~~~~~l~~ggviv~ 103 (106)
T PF13578_consen 68 GPIDLIFIDG-DHSYEAVLRDLENALPRLAPGGVIVF 103 (106)
T ss_dssp --EEEEEEES----HHHHHHHHHHHGGGEEEEEEEEE
T ss_pred CCEEEEEECC-CCCHHHHHHHHHHHHHHcCCCeEEEE
Confidence 7899998543 22234455567777788999998765
No 253
>PF02005 TRM: N2,N2-dimethylguanosine tRNA methyltransferase; InterPro: IPR002905 This enzyme 2.1.1.32 from EC uses S-adenosyl-L-methionine to methylate tRNA: S-AdoMet + tRNA = S-adenosyl-L-homocysteine + tRNA containing N2-methylguanine The TRM1 gene of Saccharomyces cerevisiae is necessary for the N2,N2-dimethylguanosine modification of both mitochondrial and cytoplasmic tRNAs []. The enzyme is found in both eukaryotes and archaea [].; GO: 0003723 RNA binding, 0004809 tRNA (guanine-N2-)-methyltransferase activity, 0008033 tRNA processing; PDB: 2YTZ_B 2DUL_A 2EJU_A 2EJT_A 3AXT_A 3AXS_A.
Probab=96.88 E-value=0.004 Score=53.96 Aligned_cols=102 Identities=25% Similarity=0.216 Sum_probs=71.5
Q ss_pred CCeEEEeCCCccHHHHHHHHh--CC-EEEEecc-hhhHHHHHHHHHHhhccccccCCCCCCCCCceEEEEeecCCCcccc
Q 027530 65 GKRVIELGAGCGVAGFGMALL--GC-NVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSGNLLGSIQAVELDWGNEDHIK 140 (222)
Q Consensus 65 ~~~vLelGcG~G~~~i~la~~--g~-~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~ 140 (222)
+.+|||-=||+|+=|+-.+.. +. +|++-|+ +++++.+++|++.|++. .+.+++...|..... .
T Consensus 50 ~~~~lDalaasGvR~iRy~~E~~~~~~v~~NDi~~~a~~~i~~N~~~N~~~-----------~~~~~v~~~DAn~ll--~ 116 (377)
T PF02005_consen 50 PIRVLDALAASGVRGIRYAKELAGVDKVTANDISPEAVELIKRNLELNGLE-----------DERIEVSNMDANVLL--Y 116 (377)
T ss_dssp -EEEEETT-TTSHHHHHHHHH-SSECEEEEEES-HHHHHHHHHHHHHCT-S-----------GCCEEEEES-HHHHH--C
T ss_pred CceEEeccccccHHHHHHHHHcCCCCEEEEecCCHHHHHHHHHhHhhcccc-----------CceEEEehhhHHHHh--h
Confidence 458999999999999988876 33 6999999 67999999999999975 125666664432211 1
Q ss_pred ccCCCccEEEEeccccCccCHHHHHHHHHHhcCCCeEEEEEEE
Q 027530 141 AVAPPFDYIIGTDVVYAEHLLEPLLQTIFALSGPKTTILLGYE 183 (222)
Q Consensus 141 ~~~~~fD~Ii~~d~~y~~~~~~~ll~~~~~~l~~~g~~~l~~~ 183 (222)
.....||+|=. |++ ....+++....+.++.||.++++..
T Consensus 117 ~~~~~fD~IDl-DPf---GSp~pfldsA~~~v~~gGll~vTaT 155 (377)
T PF02005_consen 117 SRQERFDVIDL-DPF---GSPAPFLDSALQAVKDGGLLCVTAT 155 (377)
T ss_dssp HSTT-EEEEEE---S---S--HHHHHHHHHHEEEEEEEEEEE-
T ss_pred hccccCCEEEe-CCC---CCccHhHHHHHHHhhcCCEEEEecc
Confidence 24678999853 443 3567899999999999999988764
No 254
>COG3129 Predicted SAM-dependent methyltransferase [General function prediction only]
Probab=96.88 E-value=0.0028 Score=50.69 Aligned_cols=83 Identities=14% Similarity=0.175 Sum_probs=51.6
Q ss_pred CCCeEEEeCCCccHHH-H-HHHHhCCEEEEecc-hhhHHHHHHHHHHh-hccccccCCCCCCCCCceEEEEeecCC--Cc
Q 027530 64 KGKRVIELGAGCGVAG-F-GMALLGCNVITTDQ-IEVLPLLKRNVEWN-TSRISQMNPGSGNLLGSIQAVELDWGN--ED 137 (222)
Q Consensus 64 ~~~~vLelGcG~G~~~-i-~la~~g~~v~~~D~-~~~l~~~~~n~~~n-~~~~~~~~~~~~~~~~~v~~~~~d~~~--~~ 137 (222)
++.++||+|.|.-.+- + -.-..|-+.+++|+ +.++..|+.++..| ++. ..|+.....=.+ +.
T Consensus 78 ~~i~~LDIGvGAnCIYPliG~~eYgwrfvGseid~~sl~sA~~ii~~N~~l~------------~~I~lr~qk~~~~if~ 145 (292)
T COG3129 78 KNIRILDIGVGANCIYPLIGVHEYGWRFVGSEIDSQSLSSAKAIISANPGLE------------RAIRLRRQKDSDAIFN 145 (292)
T ss_pred CceEEEeeccCcccccccccceeecceeecCccCHHHHHHHHHHHHcCcchh------------hheeEEeccCcccccc
Confidence 4567899988753211 1 11234678999999 55999999999988 332 334433211000 01
Q ss_pred cccccCCCccEEEEeccccCc
Q 027530 138 HIKAVAPPFDYIIGTDVVYAE 158 (222)
Q Consensus 138 ~~~~~~~~fD~Ii~~d~~y~~ 158 (222)
.....++.||++++++++|..
T Consensus 146 giig~nE~yd~tlCNPPFh~s 166 (292)
T COG3129 146 GIIGKNERYDATLCNPPFHDS 166 (292)
T ss_pred ccccccceeeeEecCCCcchh
Confidence 112236799999999999763
No 255
>COG1568 Predicted methyltransferases [General function prediction only]
Probab=96.62 E-value=0.011 Score=48.52 Aligned_cols=121 Identities=18% Similarity=0.188 Sum_probs=79.4
Q ss_pred CCCCCCeEEEeCCCccHHHHHHHHhCC--EEEEecchh-hHHHHHHHHHHhhccccccCCCCCCCCCceEEEEeecCCCc
Q 027530 61 SKLKGKRVIELGAGCGVAGFGMALLGC--NVITTDQIE-VLPLLKRNVEWNTSRISQMNPGSGNLLGSIQAVELDWGNED 137 (222)
Q Consensus 61 ~~~~~~~vLelGcG~G~~~i~la~~g~--~v~~~D~~~-~l~~~~~n~~~n~~~~~~~~~~~~~~~~~v~~~~~d~~~~~ 137 (222)
.++.|+.|+=+| ---+.|++++.-|. +|..+|+++ .++...+-++.-+. .++....+|..++.
T Consensus 149 GDL~gK~I~vvG-DDDLtsia~aLt~mpk~iaVvDIDERli~fi~k~aee~g~-------------~~ie~~~~Dlr~pl 214 (354)
T COG1568 149 GDLEGKEIFVVG-DDDLTSIALALTGMPKRIAVVDIDERLIKFIEKVAEELGY-------------NNIEAFVFDLRNPL 214 (354)
T ss_pred cCcCCCeEEEEc-CchhhHHHHHhcCCCceEEEEechHHHHHHHHHHHHHhCc-------------cchhheeehhcccC
Confidence 678899999999 66788888887664 699999976 88888887776653 36777777777654
Q ss_pred cccccCCCccEEEEeccccCccCHHHHHHHHHHhcCCC---eEEEEEEEEcChhHHHHHHHHH
Q 027530 138 HIKAVAPPFDYIIGTDVVYAEHLLEPLLQTIFALSGPK---TTILLGYEIRSTSVHEQMLQMW 197 (222)
Q Consensus 138 ~~~~~~~~fD~Ii~~d~~y~~~~~~~ll~~~~~~l~~~---g~~~l~~~~r~~~~~~~f~~~~ 197 (222)
.. ....+||+.+. |+.+-...+..++..=-..|+.- |.+.++....+-....++.+.+
T Consensus 215 pe-~~~~kFDvfiT-DPpeTi~alk~FlgRGI~tLkg~~~aGyfgiT~ressidkW~eiQr~l 275 (354)
T COG1568 215 PE-DLKRKFDVFIT-DPPETIKALKLFLGRGIATLKGEGCAGYFGITRRESSIDKWREIQRIL 275 (354)
T ss_pred hH-HHHhhCCeeec-CchhhHHHHHHHHhccHHHhcCCCccceEeeeeccccHHHHHHHHHHH
Confidence 32 23578999885 45454455555555444455543 5555554433333344555533
No 256
>cd00315 Cyt_C5_DNA_methylase Cytosine-C5 specific DNA methylases; Methyl transfer reactions play an important role in many aspects of biology. Cytosine-specific DNA methylases are found both in prokaryotes and eukaryotes. DNA methylation, or the covalent addition of a methyl group to cytosine within the context of the CpG dinucleotide, has profound effects on the mammalian genome. These effects include transcriptional repression via inhibition of transcription factor binding or the recruitment of methyl-binding proteins and their associated chromatin remodeling factors, X chromosome inactivation, imprinting and the suppression of parasitic DNA sequences. DNA methylation is also essential for proper embryonic development and is an important player in both DNA repair and genome stability.
Probab=96.54 E-value=0.0058 Score=50.71 Aligned_cols=40 Identities=28% Similarity=0.335 Sum_probs=34.1
Q ss_pred eEEEeCCCccHHHHHHHHhCCE-EEEecc-hhhHHHHHHHHH
Q 027530 67 RVIELGAGCGVAGFGMALLGCN-VITTDQ-IEVLPLLKRNVE 106 (222)
Q Consensus 67 ~vLelGcG~G~~~i~la~~g~~-v~~~D~-~~~l~~~~~n~~ 106 (222)
+|+||.||.|-.++.+.+.|.+ |.++|. +.+++..+.|..
T Consensus 2 ~v~dLFsG~Gg~~~gl~~~G~~~v~a~e~~~~a~~~~~~N~~ 43 (275)
T cd00315 2 RVIDLFAGIGGFRLGLEKAGFEIVAANEIDKSAAETYEANFP 43 (275)
T ss_pred cEEEEccCcchHHHHHHHcCCEEEEEEeCCHHHHHHHHHhCC
Confidence 6999999999999999999997 778998 558888777764
No 257
>COG1889 NOP1 Fibrillarin-like rRNA methylase [Translation, ribosomal structure and biogenesis]
Probab=96.47 E-value=0.22 Score=39.32 Aligned_cols=111 Identities=17% Similarity=0.175 Sum_probs=67.4
Q ss_pred CCCCCCeEEEeCCCccHHHHHHH-HhC-CEEEEecc-hhhHHHHHHHHHHhhccccccCCCCCCCCCceEEEEeecCCCc
Q 027530 61 SKLKGKRVIELGAGCGVAGFGMA-LLG-CNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSGNLLGSIQAVELDWGNED 137 (222)
Q Consensus 61 ~~~~~~~vLelGcG~G~~~i~la-~~g-~~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~v~~~~~d~~~~~ 137 (222)
...+|.+||=||+-+|...--.+ -.| ..|++++. +.+++-+..-++.. .|+--.-.|...++
T Consensus 73 pi~~g~~VLYLGAasGTTvSHVSDIv~~G~iYaVEfs~R~~reLl~~a~~R---------------~Ni~PIL~DA~~P~ 137 (231)
T COG1889 73 PIKEGSKVLYLGAASGTTVSHVSDIVGEGRIYAVEFSPRPMRELLDVAEKR---------------PNIIPILEDARKPE 137 (231)
T ss_pred CcCCCCEEEEeeccCCCcHhHHHhccCCCcEEEEEecchhHHHHHHHHHhC---------------CCceeeecccCCcH
Confidence 45688999999999997554444 344 35999998 54444333322211 13333433433332
Q ss_pred cccccCCCccEEEEeccccCccCHHHHHHHHHHhcCCCeEEEEEEEEcChh
Q 027530 138 HIKAVAPPFDYIIGTDVVYAEHLLEPLLQTIFALSGPKTTILLGYEIRSTS 188 (222)
Q Consensus 138 ~~~~~~~~fD~Ii~~d~~y~~~~~~~ll~~~~~~l~~~g~~~l~~~~r~~~ 188 (222)
.-...-+..|+|.. |+- .....+-+.......|+++|.++++.+.|+-+
T Consensus 138 ~Y~~~Ve~VDviy~-DVA-Qp~Qa~I~~~Na~~FLk~~G~~~i~iKArSId 186 (231)
T COG1889 138 KYRHLVEKVDVIYQ-DVA-QPNQAEILADNAEFFLKKGGYVVIAIKARSID 186 (231)
T ss_pred HhhhhcccccEEEE-ecC-CchHHHHHHHHHHHhcccCCeEEEEEEeeccc
Confidence 22223455777663 332 13344557777888999999999999988753
No 258
>KOG2798 consensus Putative trehalase [Carbohydrate transport and metabolism]
Probab=96.47 E-value=0.028 Score=47.00 Aligned_cols=117 Identities=21% Similarity=0.214 Sum_probs=68.5
Q ss_pred CCCeEEEeCCCccHHHHHHHHhCCEEEEecchh-hHHH--HHHHHHH--hhccc--------------cccCCCC-----
Q 027530 64 KGKRVIELGAGCGVAGFGMALLGCNVITTDQIE-VLPL--LKRNVEW--NTSRI--------------SQMNPGS----- 119 (222)
Q Consensus 64 ~~~~vLelGcG~G~~~i~la~~g~~v~~~D~~~-~l~~--~~~n~~~--n~~~~--------------~~~~~~~----- 119 (222)
...+||==|||.|.++..+|..|.++-+-+.+. |+-. -.-|.-+ |...+ .+++|.+
T Consensus 150 ~ki~iLvPGaGlGRLa~dla~~G~~~qGNEfSy~Mli~S~FiLN~~~~~nq~~IYPfIh~~sn~~~~dDQlrpi~~PD~~ 229 (369)
T KOG2798|consen 150 TKIRILVPGAGLGRLAYDLACLGFKCQGNEFSYFMLICSSFILNYCKQENQFTIYPFIHQYSNSLSRDDQLRPISIPDIH 229 (369)
T ss_pred cCceEEecCCCchhHHHHHHHhcccccccHHHHHHHHHHHHHHHhhccCCcEEEEeeeeccccccccccccccccCcccc
Confidence 456799999999999999999999888887765 3321 1122211 11110 1122211
Q ss_pred ----CCCCCceEEEEeecCCCccccccCCCccEEEEeccccCccCHHHHHHHHHHhcCCCeEEEE
Q 027530 120 ----GNLLGSIQAVELDWGNEDHIKAVAPPFDYIIGTDVVYAEHLLEPLLQTIFALSGPKTTILL 180 (222)
Q Consensus 120 ----~~~~~~v~~~~~d~~~~~~~~~~~~~fD~Ii~~d~~y~~~~~~~ll~~~~~~l~~~g~~~l 180 (222)
...........+|+-+........+.||+|+.+-.+=-.+.+-+.+++|.++|+|||+.+-
T Consensus 230 p~~~~~~~~~fsicaGDF~evy~~s~~~~~~d~VvTcfFIDTa~NileYi~tI~~iLk~GGvWiN 294 (369)
T KOG2798|consen 230 PASSNGNTGSFSICAGDFLEVYGTSSGAGSYDVVVTCFFIDTAHNILEYIDTIYKILKPGGVWIN 294 (369)
T ss_pred ccccCCCCCCccccccceeEEecCcCCCCccceEEEEEEeechHHHHHHHHHHHHhccCCcEEEe
Confidence 0111222233333322222222245799999883333356677889999999999998663
No 259
>KOG2671 consensus Putative RNA methylase [Replication, recombination and repair]
Probab=96.46 E-value=0.0053 Score=51.81 Aligned_cols=109 Identities=19% Similarity=0.086 Sum_probs=72.0
Q ss_pred CCCCCeEEEeCCCccHHHHHHHHhCCEEEEecchh-hHH-------HHHHHHHHhhccccccCCCCCCCCCceEEEEeec
Q 027530 62 KLKGKRVIELGAGCGVAGFGMALLGCNVITTDQIE-VLP-------LLKRNVEWNTSRISQMNPGSGNLLGSIQAVELDW 133 (222)
Q Consensus 62 ~~~~~~vLelGcG~G~~~i~la~~g~~v~~~D~~~-~l~-------~~~~n~~~n~~~~~~~~~~~~~~~~~v~~~~~d~ 133 (222)
..+|+-|.|=-.|||-+-+.+|..|+-|.|+|++- ++. ..+.|+++-+.. ..-+.+...|.
T Consensus 206 v~pGdivyDPFVGTGslLvsaa~FGa~viGtDIDyr~vragrg~~~si~aNFkQYg~~-----------~~fldvl~~D~ 274 (421)
T KOG2671|consen 206 VKPGDIVYDPFVGTGSLLVSAAHFGAYVIGTDIDYRTVRAGRGEDESIKANFKQYGSS-----------SQFLDVLTADF 274 (421)
T ss_pred cCCCCEEecCccccCceeeehhhhcceeeccccchheeecccCCCcchhHhHHHhCCc-----------chhhheeeecc
Confidence 44788999999999988889999999999999964 555 345566655522 12344555454
Q ss_pred CCCccccccCCCccEEEEeccccCc----------------------------------cCHHHHHHHHHHhcCCCeEEE
Q 027530 134 GNEDHIKAVAPPFDYIIGTDVVYAE----------------------------------HLLEPLLQTIFALSGPKTTIL 179 (222)
Q Consensus 134 ~~~~~~~~~~~~fD~Ii~~d~~y~~----------------------------------~~~~~ll~~~~~~l~~~g~~~ 179 (222)
.+..- ..+..||.||+-+++ .. ..+.+++.-..+.|..||++.
T Consensus 275 sn~~~--rsn~~fDaIvcDPPY-GVRe~~rk~~~k~~~r~~~~~~~~~h~p~~~~ysl~~~v~dll~fss~~L~~ggrlv 351 (421)
T KOG2671|consen 275 SNPPL--RSNLKFDAIVCDPPY-GVREGARKTGKKKSVRTTEESSRGDHYPSTEQYSLSSLVYDLLCFSSRRLVDGGRLV 351 (421)
T ss_pred cCcch--hhcceeeEEEeCCCc-chhhhhhhhcccCcccCcccccccccCCccchhHHHHHHhhHHHhhHhhhhcCceEE
Confidence 43221 125689999976654 21 123445566666788899887
Q ss_pred EEEEE
Q 027530 180 LGYEI 184 (222)
Q Consensus 180 l~~~~ 184 (222)
+-.+.
T Consensus 352 ~w~p~ 356 (421)
T KOG2671|consen 352 FWLPT 356 (421)
T ss_pred EecCc
Confidence 65543
No 260
>COG4262 Predicted spermidine synthase with an N-terminal membrane domain [General function prediction only]
Probab=96.44 E-value=0.033 Score=47.59 Aligned_cols=109 Identities=13% Similarity=0.043 Sum_probs=70.9
Q ss_pred CeEEEeCCCccHHHHHHHHhC-C-EEEEecc-hhhHHHHHHHHHHhhccccccCCCCCCCCCceEEEEeecCCCcccccc
Q 027530 66 KRVIELGAGCGVAGFGMALLG-C-NVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSGNLLGSIQAVELDWGNEDHIKAV 142 (222)
Q Consensus 66 ~~vLelGcG~G~~~i~la~~g-~-~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~ 142 (222)
.+||=||-|-|+..-.+.+.- . +++.+|. |+|++.++.|.-.....-.. -...++++..-|..+. ....
T Consensus 291 ~~vLvlGGGDGLAlRellkyP~~~qI~lVdLDP~miela~~~~vlr~~N~~s------f~dpRv~Vv~dDAf~w--lr~a 362 (508)
T COG4262 291 RSVLVLGGGDGLALRELLKYPQVEQITLVDLDPRMIELASHATVLRALNQGS------FSDPRVTVVNDDAFQW--LRTA 362 (508)
T ss_pred ceEEEEcCCchHHHHHHHhCCCcceEEEEecCHHHHHHhhhhhHhhhhccCC------ccCCeeEEEeccHHHH--HHhh
Confidence 579999999999888888764 3 7999999 78999999765432221000 1234677776333322 1223
Q ss_pred CCCccEEEEeccccCcc-----CHHHHHHHHHHhcCCCeEEEEEE
Q 027530 143 APPFDYIIGTDVVYAEH-----LLEPLLQTIFALSGPKTTILLGY 182 (222)
Q Consensus 143 ~~~fD~Ii~~d~~y~~~-----~~~~ll~~~~~~l~~~g~~~l~~ 182 (222)
...||+||..-+=-... .-.++...+++.|+++|.+++..
T Consensus 363 ~~~fD~vIVDl~DP~tps~~rlYS~eFY~ll~~~l~e~Gl~VvQa 407 (508)
T COG4262 363 ADMFDVVIVDLPDPSTPSIGRLYSVEFYRLLSRHLAETGLMVVQA 407 (508)
T ss_pred cccccEEEEeCCCCCCcchhhhhhHHHHHHHHHhcCcCceEEEec
Confidence 56899998641110111 13457888899999999987754
No 261
>KOG3178 consensus Hydroxyindole-O-methyltransferase and related SAM-dependent methyltransferases [General function prediction only]
Probab=96.42 E-value=0.02 Score=48.51 Aligned_cols=94 Identities=14% Similarity=-0.002 Sum_probs=64.9
Q ss_pred CeEEEeCCCccHHHHHHHHhCCEEEEecc--hhhHHHHHHHHHHhhccccccCCCCCCCCCceEEEEeecCCCccccccC
Q 027530 66 KRVIELGAGCGVAGFGMALLGCNVITTDQ--IEVLPLLKRNVEWNTSRISQMNPGSGNLLGSIQAVELDWGNEDHIKAVA 143 (222)
Q Consensus 66 ~~vLelGcG~G~~~i~la~~g~~v~~~D~--~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~ 143 (222)
...+|+|.|.|.+.-.+...-.+|-+++. +.+++.+. +.. -+ |..+..|. ... -
T Consensus 179 ~~avDvGgGiG~v~k~ll~~fp~ik~infdlp~v~~~a~-~~~-~g----------------V~~v~gdm---fq~---~ 234 (342)
T KOG3178|consen 179 NVAVDVGGGIGRVLKNLLSKYPHIKGINFDLPFVLAAAP-YLA-PG----------------VEHVAGDM---FQD---T 234 (342)
T ss_pred ceEEEcCCcHhHHHHHHHHhCCCCceeecCHHHHHhhhh-hhc-CC----------------cceecccc---ccc---C
Confidence 67899999999988777766666777776 33444433 332 22 23333222 111 3
Q ss_pred CCccEEEEeccccCcc--CHHHHHHHHHHhcCCCeEEEEEEE
Q 027530 144 PPFDYIIGTDVVYAEH--LLEPLLQTIFALSGPKTTILLGYE 183 (222)
Q Consensus 144 ~~fD~Ii~~d~~y~~~--~~~~ll~~~~~~l~~~g~~~l~~~ 183 (222)
++-|+|+.--+++++. +..++++.+++.|+|+|.+++...
T Consensus 235 P~~daI~mkWiLhdwtDedcvkiLknC~~sL~~~GkIiv~E~ 276 (342)
T KOG3178|consen 235 PKGDAIWMKWILHDWTDEDCVKILKNCKKSLPPGGKIIVVEN 276 (342)
T ss_pred CCcCeEEEEeecccCChHHHHHHHHHHHHhCCCCCEEEEEec
Confidence 4567999999998854 577899999999999999998764
No 262
>PRK15001 SAM-dependent 23S ribosomal RNA mG1835 methyltransferase; Provisional
Probab=96.41 E-value=0.13 Score=44.76 Aligned_cols=138 Identities=16% Similarity=0.162 Sum_probs=88.1
Q ss_pred cCeEEEEeeCCCCcc-ccccccchHH-HHHHHHhhhccCCCCCCCCCCCCeEEEeCCCccHHHHHHHHhCCEEEEecchh
Q 027530 19 LGHQLQFSQDPNSKH-LGTTVWDASV-VFVKYLEKNCRKGRFCPSKLKGKRVIELGAGCGVAGFGMALLGCNVITTDQIE 96 (222)
Q Consensus 19 ~~~~~~i~q~~~~~~-~g~~~W~~~~-~la~~l~~~~~~~~~~~~~~~~~~vLelGcG~G~~~i~la~~g~~v~~~D~~~ 96 (222)
..++++++..|.... ....-|+++- +|.+++... ...+ +||=|+=.-|.+++.++..+.. ..+|.--
T Consensus 7 ~~~~~~l~r~p~~~~~~~l~awdaade~ll~~~~~~---------~~~~-~~~i~nd~fGal~~~l~~~~~~-~~~ds~~ 75 (378)
T PRK15001 7 GFRSLTLQRFPATDDVNPLQAWEAADEYLLQQLDDT---------EIRG-PVLILNDAFGALSCALAEHKPY-SIGDSYI 75 (378)
T ss_pred CCceeEEEECCCCCCcCcccccccHHHHHHHHHhhc---------ccCC-CEEEEcCchhHHHHHHHhCCCC-eeehHHH
Confidence 348899999897555 5589999875 455555432 1222 7999999999999999865543 3366322
Q ss_pred hHHHHHHHHHHhhccccccCCCCCCCCCceEEEEeecCCCccccccCCCccEEEEeccccCccCHHHHHHHHHHhcCCCe
Q 027530 97 VLPLLKRNVEWNTSRISQMNPGSGNLLGSIQAVELDWGNEDHIKAVAPPFDYIIGTDVVYAEHLLEPLLQTIFALSGPKT 176 (222)
Q Consensus 97 ~l~~~~~n~~~n~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~fD~Ii~~d~~y~~~~~~~ll~~~~~~l~~~g 176 (222)
.-..++.|+++|++. .+.++... - .......+|+|+.-=+- ........+..+..++.|++
T Consensus 76 ~~~~~~~n~~~n~~~-----------~~~~~~~~--~-----~~~~~~~~d~vl~~~PK-~~~~l~~~l~~l~~~l~~~~ 136 (378)
T PRK15001 76 SELATRENLRLNGID-----------ESSVKFLD--S-----TADYPQQPGVVLIKVPK-TLALLEQQLRALRKVVTSDT 136 (378)
T ss_pred HHHHHHHHHHHcCCC-----------cccceeec--c-----cccccCCCCEEEEEeCC-CHHHHHHHHHHHHhhCCCCC
Confidence 446678899999853 12233332 1 11124569988842111 12345557778888899999
Q ss_pred EEEEEEEEcC
Q 027530 177 TILLGYEIRS 186 (222)
Q Consensus 177 ~~~l~~~~r~ 186 (222)
.++.+...+.
T Consensus 137 ~ii~g~~~k~ 146 (378)
T PRK15001 137 RIIAGAKARD 146 (378)
T ss_pred EEEEEEecCC
Confidence 9876665544
No 263
>COG5459 Predicted rRNA methylase [Translation, ribosomal structure and biogenesis]
Probab=96.27 E-value=0.0051 Score=52.11 Aligned_cols=107 Identities=14% Similarity=0.220 Sum_probs=64.1
Q ss_pred CCCCCCeEEEeCCCccHHHHHHHHhCC---EEEEecchhhHHHHHHHHHHhhccccccCCCCCCCCCceEEEEeecCCCc
Q 027530 61 SKLKGKRVIELGAGCGVAGFGMALLGC---NVITTDQIEVLPLLKRNVEWNTSRISQMNPGSGNLLGSIQAVELDWGNED 137 (222)
Q Consensus 61 ~~~~~~~vLelGcG~G~~~i~la~~g~---~v~~~D~~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~v~~~~~d~~~~~ 137 (222)
++|.-+++||+|.|.|....++-..-. .++.++.+.+++..-..+..|... ...+|...+
T Consensus 110 ~dfapqsiLDvG~GPgtgl~A~n~i~Pdl~sa~ile~sp~lrkV~~tl~~nv~t-----------------~~td~r~s~ 172 (484)
T COG5459 110 PDFAPQSILDVGAGPGTGLWALNDIWPDLKSAVILEASPALRKVGDTLAENVST-----------------EKTDWRASD 172 (484)
T ss_pred CCcCcchhhccCCCCchhhhhhcccCCCchhhhhhccCHHHHHHHHHHHhhccc-----------------ccCCCCCCc
Confidence 677888999999999865444333222 366666554555555555554322 223333221
Q ss_pred c-----ccccCCCccEEEEeccccCccC---HHHHHHHHHHhcCCCeEEEEEEEE
Q 027530 138 H-----IKAVAPPFDYIIGTDVVYAEHL---LEPLLQTIFALSGPKTTILLGYEI 184 (222)
Q Consensus 138 ~-----~~~~~~~fD~Ii~~d~~y~~~~---~~~ll~~~~~~l~~~g~~~l~~~~ 184 (222)
. .-.....|++++..+-+-.... +...++.+..+++|||.++|+...
T Consensus 173 vt~dRl~lp~ad~ytl~i~~~eLl~d~~ek~i~~~ie~lw~l~~~gg~lVivErG 227 (484)
T COG5459 173 VTEDRLSLPAADLYTLAIVLDELLPDGNEKPIQVNIERLWNLLAPGGHLVIVERG 227 (484)
T ss_pred cchhccCCCccceeehhhhhhhhccccCcchHHHHHHHHHHhccCCCeEEEEeCC
Confidence 1 1112457898887766655443 333677777789999998887753
No 264
>KOG0024 consensus Sorbitol dehydrogenase [Secondary metabolites biosynthesis, transport and catabolism]
Probab=96.23 E-value=0.011 Score=49.67 Aligned_cols=98 Identities=20% Similarity=0.183 Sum_probs=62.1
Q ss_pred CCCCCCeEEEeCCCc-cHHHHHHHHh-CC-EEEEecc-hhhHHHHHHHHHHhhccccccCCCCCCCCCceEEEEeecCCC
Q 027530 61 SKLKGKRVIELGAGC-GVAGFGMALL-GC-NVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSGNLLGSIQAVELDWGNE 136 (222)
Q Consensus 61 ~~~~~~~vLelGcG~-G~~~i~la~~-g~-~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~v~~~~~d~~~~ 136 (222)
....|.+||=+|||. |++++..|+. |+ +|+.+|. ++-++.|++ +-... +...... ...
T Consensus 166 ~vk~Gs~vLV~GAGPIGl~t~l~Aka~GA~~VVi~d~~~~Rle~Ak~-~Ga~~----------------~~~~~~~-~~~ 227 (354)
T KOG0024|consen 166 GVKKGSKVLVLGAGPIGLLTGLVAKAMGASDVVITDLVANRLELAKK-FGATV----------------TDPSSHK-SSP 227 (354)
T ss_pred CcccCCeEEEECCcHHHHHHHHHHHHcCCCcEEEeecCHHHHHHHHH-hCCeE----------------Eeecccc-ccH
Confidence 455788999999998 9999888875 77 6999998 668888887 32111 0000000 000
Q ss_pred ccc------cccCCCccEEEEeccccCccCHHHHHHHHHHhcCCCeEEEEEE
Q 027530 137 DHI------KAVAPPFDYIIGTDVVYAEHLLEPLLQTIFALSGPKTTILLGY 182 (222)
Q Consensus 137 ~~~------~~~~~~fD~Ii~~d~~y~~~~~~~ll~~~~~~l~~~g~~~l~~ 182 (222)
... ......+|+.+-+. -...-+++.-..++.+|.+.++.
T Consensus 228 ~~~~~~v~~~~g~~~~d~~~dCs------G~~~~~~aai~a~r~gGt~vlvg 273 (354)
T KOG0024|consen 228 QELAELVEKALGKKQPDVTFDCS------GAEVTIRAAIKATRSGGTVVLVG 273 (354)
T ss_pred HHHHHHHHhhccccCCCeEEEcc------CchHHHHHHHHHhccCCEEEEec
Confidence 100 01124577777543 34667777778889999877765
No 265
>PF01555 N6_N4_Mtase: DNA methylase; InterPro: IPR002941 This domain is found in DNA methylases. In prokaryotes, the major role of DNA methylation is to protect host DNA against degradation by restriction enzymes. This family contains both N-4 cytosine-specific DNA methylases and N-6 Adenine-specific DNA methylases. N-4 cytosine-specific DNA methylases (2.1.1.113 from EC) [] are enzymes that specifically methylate the amino group at the C-4 position of cytosines in DNA. Such enzymes are found as components of type II restriction-modification systems in prokaryotes. Such enzymes recognise a specific sequence in DNA and methylate a cytosine in that sequence. By this action they protect DNA from cleavage by type II restriction enzymes that recognise the same sequence. N-6 adenine-specific DNA methylases (2.1.1.72 from EC) (A-Mtase) are enzymes that specifically methylate the amino group at the C-6 position of adenines in DNA. Such enzymes are found in the three existing types of bacterial restriction-modification systems (in type I system the A-Mtase is the product of the hsdM gene, and in type III it is the product of the mod gene). All of these enzymes recognise a specific sequence in DNA and methylate an adenine in that sequence.; GO: 0003677 DNA binding, 0008170 N-methyltransferase activity, 0006306 DNA methylation; PDB: 2ZIF_A 2ZIE_A 2ZIG_A 1NW6_A 1NW8_A 1NW7_A 1NW5_A 1EG2_A 1BOO_A 1G60_B ....
Probab=96.21 E-value=0.014 Score=46.29 Aligned_cols=56 Identities=25% Similarity=0.274 Sum_probs=40.6
Q ss_pred chHHHHHHHHhhhccCCCCCCCCCCCCeEEEeCCCccHHHHHHHHhCCEEEEecc-hhhHHHHHH
Q 027530 40 DASVVFVKYLEKNCRKGRFCPSKLKGKRVIELGAGCGVAGFGMALLGCNVITTDQ-IEVLPLLKR 103 (222)
Q Consensus 40 ~~~~~la~~l~~~~~~~~~~~~~~~~~~vLelGcG~G~~~i~la~~g~~v~~~D~-~~~l~~~~~ 103 (222)
+-...|.+.+... ...+|..|||--||+|..++++.++|-+.+++|+ ++.++.|++
T Consensus 175 ~kP~~l~~~lI~~--------~t~~gdiVlDpF~GSGTT~~aa~~l~R~~ig~E~~~~y~~~a~~ 231 (231)
T PF01555_consen 175 QKPVELIERLIKA--------STNPGDIVLDPFAGSGTTAVAAEELGRRYIGIEIDEEYCEIAKK 231 (231)
T ss_dssp -S-HHHHHHHHHH--------HS-TT-EEEETT-TTTHHHHHHHHTT-EEEEEESSHHHHHHHHH
T ss_pred cCCHHHHHHHHHh--------hhccceeeehhhhccChHHHHHHHcCCeEEEEeCCHHHHHHhcC
Confidence 3356677766654 2346889999999999999999999999999999 557877764
No 266
>PF04672 Methyltransf_19: S-adenosyl methyltransferase; InterPro: IPR006764 This is a family of uncharacterised proteins.; PDB: 3GIW_A 3GO4_A 2QE6_A.
Probab=96.19 E-value=0.018 Score=47.31 Aligned_cols=108 Identities=16% Similarity=0.140 Sum_probs=63.3
Q ss_pred CeEEEeCCCccH--HHHHHHHh---CCEEEEecc-hhhHHHHHHHHHHhhccccccCCCCCCCCCceEEEEeecCCCccc
Q 027530 66 KRVIELGAGCGV--AGFGMALL---GCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSGNLLGSIQAVELDWGNEDHI 139 (222)
Q Consensus 66 ~~vLelGcG~G~--~~i~la~~---g~~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~ 139 (222)
...||||||.-. ..-..|+. .++|+-+|. +-++..++.-+..+. .....+++.|..+...+
T Consensus 70 rQFLDlGsGlPT~~nvHevAq~~~P~aRVVYVD~DPvv~ah~ralL~~~~-------------~g~t~~v~aD~r~p~~i 136 (267)
T PF04672_consen 70 RQFLDLGSGLPTAGNVHEVAQRVAPDARVVYVDNDPVVLAHARALLADNP-------------RGRTAYVQADLRDPEAI 136 (267)
T ss_dssp -EEEEET--S--SS-HHHHHHHH-TT-EEEEEESSHHHHHCCHHHHTT-T-------------TSEEEEEE--TT-HHHH
T ss_pred ceEEEcccCCCCCCCHhHHHHhhCCCceEEEECCCchHHHHHHhhhcCCC-------------CccEEEEeCCCCCHHHH
Confidence 359999999532 23445443 568999999 557777777666443 12478888888776433
Q ss_pred cc---cCCCc-----cEEEEeccccCc---cCHHHHHHHHHHhcCCCeEEEEEEEEcC
Q 027530 140 KA---VAPPF-----DYIIGTDVVYAE---HLLEPLLQTIFALSGPKTTILLGYEIRS 186 (222)
Q Consensus 140 ~~---~~~~f-----D~Ii~~d~~y~~---~~~~~ll~~~~~~l~~~g~~~l~~~~r~ 186 (222)
.. ...-+ =.++...++++. +....+++.+...|.||..+.+++....
T Consensus 137 L~~p~~~~~lD~~rPVavll~~vLh~v~D~~dp~~iv~~l~d~lapGS~L~ish~t~d 194 (267)
T PF04672_consen 137 LAHPEVRGLLDFDRPVAVLLVAVLHFVPDDDDPAGIVARLRDALAPGSYLAISHATDD 194 (267)
T ss_dssp HCSHHHHCC--TTS--EEEECT-GGGS-CGCTHHHHHHHHHCCS-TT-EEEEEEEB-T
T ss_pred hcCHHHHhcCCCCCCeeeeeeeeeccCCCccCHHHHHHHHHHhCCCCceEEEEecCCC
Confidence 21 11222 256667787764 4577899999999999999999987654
No 267
>KOG2078 consensus tRNA modification enzyme [RNA processing and modification]
Probab=96.17 E-value=0.0037 Score=54.07 Aligned_cols=72 Identities=22% Similarity=0.264 Sum_probs=55.2
Q ss_pred ccccccccchHHHHHHHHhhhccCCCCCCCCCCCCeEEEeCCCccHHHHHHHHhCCEEEEecc-hhhHHHHHHHHHHhhc
Q 027530 32 KHLGTTVWDASVVFVKYLEKNCRKGRFCPSKLKGKRVIELGAGCGVAGFGMALLGCNVITTDQ-IEVLPLLKRNVEWNTS 110 (222)
Q Consensus 32 ~~~g~~~W~~~~~la~~l~~~~~~~~~~~~~~~~~~vLelGcG~G~~~i~la~~g~~v~~~D~-~~~l~~~~~n~~~n~~ 110 (222)
..+|..-|.+ .+..+.-.- + .-...|..|-|+.||.|..++.+++.+..|++-|. ++++++++.|+..|.+
T Consensus 225 ~DfskVYWns-RL~~Eherl---s----g~fk~gevv~D~FaGvGPfa~Pa~kK~crV~aNDLNpesik~Lk~ni~lNkv 296 (495)
T KOG2078|consen 225 FDFSKVYWNS-RLSHEHERL---S----GLFKPGEVVCDVFAGVGPFALPAAKKGCRVYANDLNPESIKWLKANIKLNKV 296 (495)
T ss_pred EecceEEeec-cchhHHHHH---h----hccCCcchhhhhhcCcCccccchhhcCcEEEecCCCHHHHHHHHHhcccccc
Confidence 3466667984 333332211 0 22335778999999999999999999999999998 8999999999999986
Q ss_pred c
Q 027530 111 R 111 (222)
Q Consensus 111 ~ 111 (222)
.
T Consensus 297 ~ 297 (495)
T KOG2078|consen 297 D 297 (495)
T ss_pred c
Confidence 4
No 268
>PLN02668 indole-3-acetate carboxyl methyltransferase
Probab=96.14 E-value=0.08 Score=45.96 Aligned_cols=31 Identities=16% Similarity=0.252 Sum_probs=22.9
Q ss_pred CCeEEEeCCCccHHHHHHHHh------------C-----CEEEEecch
Q 027530 65 GKRVIELGAGCGVAGFGMALL------------G-----CNVITTDQI 95 (222)
Q Consensus 65 ~~~vLelGcG~G~~~i~la~~------------g-----~~v~~~D~~ 95 (222)
..+|+|+|||+|..++.+... + .+|.+.|++
T Consensus 64 ~~~iaDlGcs~G~ntl~~vs~iI~~i~~~~~~~~~~~pe~qv~~nDLP 111 (386)
T PLN02668 64 PFTAVDLGCSSGSNTIHIIDVIVKHMSKRYESAGLDPPEFSAFFSDLP 111 (386)
T ss_pred ceeEEEecCCCCccHHHHHHHHHHHHHHHhhhcCCCCCcceEEecCCC
Confidence 458999999999887665431 1 358899984
No 269
>KOG1122 consensus tRNA and rRNA cytosine-C5-methylase (nucleolar protein NOL1/NOP2) [RNA processing and modification]
Probab=96.11 E-value=0.23 Score=43.25 Aligned_cols=108 Identities=19% Similarity=0.189 Sum_probs=68.8
Q ss_pred CCCCCCeEEEeCCCccHHHH-HHHHhC--CEEEEecch-hhHHHHHHHHHHhhccccccCCCCCCCCCceEEEEeecCCC
Q 027530 61 SKLKGKRVIELGAGCGVAGF-GMALLG--CNVITTDQI-EVLPLLKRNVEWNTSRISQMNPGSGNLLGSIQAVELDWGNE 136 (222)
Q Consensus 61 ~~~~~~~vLelGcG~G~~~i-~la~~g--~~v~~~D~~-~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~v~~~~~d~~~~ 136 (222)
...+|.+|||++|-.|-=+. .++... ..|++.|.. .-+..++.|+.+-+.. +..+..+|-..+
T Consensus 238 ~Pq~gERIlDmcAAPGGKTt~IAalMkn~G~I~AnD~n~~r~~~l~~n~~rlGv~-------------ntiv~n~D~~ef 304 (460)
T KOG1122|consen 238 DPQPGERILDMCAAPGGKTTHIAALMKNTGVIFANDSNENRLKSLKANLHRLGVT-------------NTIVSNYDGREF 304 (460)
T ss_pred CCCCCCeecchhcCCCchHHHHHHHHcCCceEEecccchHHHHHHHHHHHHhCCC-------------ceEEEccCcccc
Confidence 34588999999999975333 333332 359999984 5889999999988753 444444443322
Q ss_pred ccccccCCCccEEEE----ec--cccCc----------------cCHHHHHHHHHHhcCCCeEEEEEE
Q 027530 137 DHIKAVAPPFDYIIG----TD--VVYAE----------------HLLEPLLQTIFALSGPKTTILLGY 182 (222)
Q Consensus 137 ~~~~~~~~~fD~Ii~----~d--~~y~~----------------~~~~~ll~~~~~~l~~~g~~~l~~ 182 (222)
..... .++||-|+. +. +++.. +....|+....+++++||+++.++
T Consensus 305 ~~~~~-~~~fDRVLLDAPCSGtgvi~K~~~vkt~k~~~di~~~~~LQr~LllsAi~lv~~GGvLVYST 371 (460)
T KOG1122|consen 305 PEKEF-PGSFDRVLLDAPCSGTGVISKDQSVKTNKTVKDILRYAHLQRELLLSAIDLVKAGGVLVYST 371 (460)
T ss_pred ccccc-CcccceeeecCCCCCCcccccccccccchhHHHHHHhHHHHHHHHHHHHhhccCCcEEEEEe
Confidence 22222 338999874 33 33322 224557777778889999876654
No 270
>PF03492 Methyltransf_7: SAM dependent carboxyl methyltransferase; InterPro: IPR005299 This family of plant methyltransferases contains enzymes that act on a variety of substrates including salicylic acid, jasmonic acid and 7-Methylxanthine. Caffeine is synthesized through sequential three-step methylation of xanthine derivatives at positions 7-N, 3-N, and 1-N. The protein 7-methylxanthine methyltransferase (designated as CaMXMT) catalyses the second step to produce theobromine [].; GO: 0008168 methyltransferase activity; PDB: 2EFJ_A 1M6E_X 2EG5_C 3B5I_B.
Probab=96.04 E-value=0.069 Score=45.64 Aligned_cols=115 Identities=11% Similarity=-0.011 Sum_probs=57.3
Q ss_pred CCCeEEEeCCCccHHHHHHHHh------------C------CEEEEecchh-hHHHHHHHHHHhhccccccCCCCCCCCC
Q 027530 64 KGKRVIELGAGCGVAGFGMALL------------G------CNVITTDQIE-VLPLLKRNVEWNTSRISQMNPGSGNLLG 124 (222)
Q Consensus 64 ~~~~vLelGcG~G~~~i~la~~------------g------~~v~~~D~~~-~l~~~~~n~~~n~~~~~~~~~~~~~~~~ 124 (222)
+.-+|.|+||.+|..++.+... + .+|+..|++. =...+=+++..+..... ...
T Consensus 16 ~~~~iaD~GcS~G~Nsl~~~~~ii~~i~~~~~~~~~~~~~e~~v~~nDlP~NDFn~lF~~l~~~~~~~~--------~~~ 87 (334)
T PF03492_consen 16 KPFRIADLGCSSGPNSLLAVSNIIDAIRERCRSSNNQPPPEFQVFFNDLPSNDFNTLFKSLPSFQQSLK--------KFR 87 (334)
T ss_dssp TEEEEEEES--SSHHHHHHHHHHHHHHHHHHHCTT-SS--EEEEEEEE-TTS-HHHHHHCHHHHHHHHH--------HTT
T ss_pred CceEEEecCCCCCccHHHHHHHHHHHHHHHhhhhcCCCCCeEEEEeCCCCCccHHHHHHhChhhhhccC--------CCc
Confidence 3358999999999988876642 2 2699999842 22222222222210000 001
Q ss_pred ceEEEEeecCCCccccccCCCccEEEEeccccCcc---------------------------------------CHHHHH
Q 027530 125 SIQAVELDWGNEDHIKAVAPPFDYIIGTDVVYAEH---------------------------------------LLEPLL 165 (222)
Q Consensus 125 ~v~~~~~d~~~~~~~~~~~~~fD~Ii~~d~~y~~~---------------------------------------~~~~ll 165 (222)
++-+ .+-=+.+.....+.++.|+++++-.++|.+ ++..+|
T Consensus 88 ~~f~-~gvpgSFy~rLfP~~Svh~~~Ss~alHWLS~vP~~l~~~~~~~~Nkg~i~~~~~~~~~v~~ay~~Qf~~D~~~FL 166 (334)
T PF03492_consen 88 NYFV-SGVPGSFYGRLFPSNSVHFGHSSYALHWLSQVPEELVDKSSPAWNKGNIYISRTSPPEVAKAYAKQFQKDFSSFL 166 (334)
T ss_dssp SEEE-EEEES-TTS--S-TT-EEEEEEES-TTB-SSS-CCCCTTTSTTTSTTTSSSSTTS-HHHHHHHHHHHHHHHHHHH
T ss_pred eEEE-EecCchhhhccCCCCceEEEEEechhhhcccCCcccccccccccccCcEEEecCCCHHHHHHHHHHHHHHHHHHH
Confidence 2222 222244454455678888888888777621 122233
Q ss_pred HHHHHhcCCCeEEEEEEEEcCh
Q 027530 166 QTIFALSGPKTTILLGYEIRST 187 (222)
Q Consensus 166 ~~~~~~l~~~g~~~l~~~~r~~ 187 (222)
+.-.+-|+|||++++....|..
T Consensus 167 ~~Ra~ELv~GG~mvl~~~gr~~ 188 (334)
T PF03492_consen 167 KARAEELVPGGRMVLTFLGRDE 188 (334)
T ss_dssp HHHHHHEEEEEEEEEEEEE-ST
T ss_pred HHhhheeccCcEEEEEEeeccc
Confidence 3334447899999999887765
No 271
>PF07757 AdoMet_MTase: Predicted AdoMet-dependent methyltransferase; InterPro: IPR011671 tRNA (uracil-O(2)-)-methyltransferase catalyses the formation of O(2)-methyl-uracil at position 44 (m2U44) in tRNA(Ser) [].; GO: 0008168 methyltransferase activity
Probab=95.95 E-value=0.014 Score=41.00 Aligned_cols=29 Identities=21% Similarity=0.315 Sum_probs=26.9
Q ss_pred CeEEEeCCCccHHHHHHHHhCCEEEEecc
Q 027530 66 KRVIELGAGCGVAGFGMALLGCNVITTDQ 94 (222)
Q Consensus 66 ~~vLelGcG~G~~~i~la~~g~~v~~~D~ 94 (222)
....|||||.|++--.|.+.|.+=.|+|.
T Consensus 60 ~~FVDlGCGNGLLV~IL~~EGy~G~GiD~ 88 (112)
T PF07757_consen 60 QGFVDLGCGNGLLVYILNSEGYPGWGIDA 88 (112)
T ss_pred CceEEccCCchHHHHHHHhCCCCcccccc
Confidence 46999999999999999999999999996
No 272
>COG1867 TRM1 N2,N2-dimethylguanosine tRNA methyltransferase [Translation, ribosomal structure and biogenesis]
Probab=95.93 E-value=0.044 Score=46.88 Aligned_cols=99 Identities=20% Similarity=0.298 Sum_probs=71.1
Q ss_pred CCeEEEeCCCccHHHHHHHHh-CC-EEEEecc-hhhHHHHHHHHHHhhccccccCCCCCCCCCceEEEEeecCCCccc-c
Q 027530 65 GKRVIELGAGCGVAGFGMALL-GC-NVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSGNLLGSIQAVELDWGNEDHI-K 140 (222)
Q Consensus 65 ~~~vLelGcG~G~~~i~la~~-g~-~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~-~ 140 (222)
..+|||-=||+|+=||-.+.. +. +|++-|+ +++++.+++|++.|.. ++..+.. .|...+ .
T Consensus 53 ~~~v~DalsatGiRgIRya~E~~~~~v~lNDisp~Avelik~Nv~~N~~-------------~~~~v~n---~DAN~lm~ 116 (380)
T COG1867 53 PKRVLDALSATGIRGIRYAVETGVVKVVLNDISPKAVELIKENVRLNSG-------------EDAEVIN---KDANALLH 116 (380)
T ss_pred CeEEeecccccchhHhhhhhhcCccEEEEccCCHHHHHHHHHHHHhcCc-------------ccceeec---chHHHHHH
Confidence 578999999999999988865 55 7999999 7799999999999932 2334443 222111 1
Q ss_pred ccCCCccEEEEeccccCccCHHHHHHHHHHhcCCCeEEEEEEE
Q 027530 141 AVAPPFDYIIGTDVVYAEHLLEPLLQTIFALSGPKTTILLGYE 183 (222)
Q Consensus 141 ~~~~~fD~Ii~~d~~y~~~~~~~ll~~~~~~l~~~g~~~l~~~ 183 (222)
.....||+|=. |++ ....+++....+..+.+|.+.++..
T Consensus 117 ~~~~~fd~IDi-DPF---GSPaPFlDaA~~s~~~~G~l~vTAT 155 (380)
T COG1867 117 ELHRAFDVIDI-DPF---GSPAPFLDAALRSVRRGGLLCVTAT 155 (380)
T ss_pred hcCCCccEEec-CCC---CCCchHHHHHHHHhhcCCEEEEEec
Confidence 12368998832 443 3456789999898999998877653
No 273
>KOG3115 consensus Methyltransferase-like protein [General function prediction only]
Probab=95.92 E-value=0.045 Score=43.08 Aligned_cols=113 Identities=9% Similarity=-0.009 Sum_probs=67.1
Q ss_pred CeEEEeCCCccHHHHHHHHhCCE--EEEecc-hhhHHHHHHHHHHhhccccccCCCCCCCCCceEEEEeecCCCcccccc
Q 027530 66 KRVIELGAGCGVAGFGMALLGCN--VITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSGNLLGSIQAVELDWGNEDHIKAV 142 (222)
Q Consensus 66 ~~vLelGcG~G~~~i~la~~g~~--v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~ 142 (222)
-.+.|||||-|-+-+.++.+-.. +.|.++ ..+-+..++.+..-.... . .....++.+....-......-+.
T Consensus 62 vefaDIGCGyGGLlv~Lsp~fPdtLiLGmEIR~KVsdYVk~RI~ALR~~~-----a-~~~~~ni~vlr~namk~lpn~f~ 135 (249)
T KOG3115|consen 62 VEFADIGCGYGGLLMKLAPKFPDTLILGMEIRDKVSDYVKERIQALRRTS-----A-EGQYPNISVLRTNAMKFLPNFFE 135 (249)
T ss_pred ceEEeeccCccchhhhccccCccceeeeehhhHHHHHHHHHHHHHHhccc-----c-ccccccceeeeccchhhccchhh
Confidence 46899999999888888888664 889998 668888888776544210 0 01123444443222211110011
Q ss_pred C--CCccEEEEeccccCcc------CHHHHHHHHHHhcCCCeEEEEEEEE
Q 027530 143 A--PPFDYIIGTDVVYAEH------LLEPLLQTIFALSGPKTTILLGYEI 184 (222)
Q Consensus 143 ~--~~fD~Ii~~d~~y~~~------~~~~ll~~~~~~l~~~g~~~l~~~~ 184 (222)
. -+-++.+..|+-+... .-..++....-+|++||.+|..+..
T Consensus 136 kgqLskmff~fpdpHfk~~khk~rii~~~l~~eyay~l~~gg~~ytitDv 185 (249)
T KOG3115|consen 136 KGQLSKMFFLFPDPHFKARKHKWRIITSTLLSEYAYVLREGGILYTITDV 185 (249)
T ss_pred hcccccceeecCChhHhhhhccceeechhHHHHHHhhhhcCceEEEEeeH
Confidence 1 1234444455544321 1345778888889999999887654
No 274
>PF03141 Methyltransf_29: Putative S-adenosyl-L-methionine-dependent methyltransferase; InterPro: IPR004159 Members of this family of hypothetical plant proteins are putative methyltransferases. ; GO: 0008168 methyltransferase activity
Probab=95.91 E-value=0.031 Score=49.59 Aligned_cols=119 Identities=17% Similarity=0.235 Sum_probs=70.5
Q ss_pred CeEEEeCCCccHHHHHHHHhCC---EEEEecchhhHHHHHHHHHHhhccccccCCCCCCCCCceEEEEeecCCCcccccc
Q 027530 66 KRVIELGAGCGVAGFGMALLGC---NVITTDQIEVLPLLKRNVEWNTSRISQMNPGSGNLLGSIQAVELDWGNEDHIKAV 142 (222)
Q Consensus 66 ~~vLelGcG~G~~~i~la~~g~---~v~~~D~~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~ 142 (222)
..|+|+.+|.|-++.++..... +|+-++.+..+.. +-.-|+ --.-.||.+.. +.-
T Consensus 367 RNVMDMnAg~GGFAAAL~~~~VWVMNVVP~~~~ntL~v----IydRGL----------------IG~yhDWCE~f--sTY 424 (506)
T PF03141_consen 367 RNVMDMNAGYGGFAAALIDDPVWVMNVVPVSGPNTLPV----IYDRGL----------------IGVYHDWCEAF--STY 424 (506)
T ss_pred eeeeeecccccHHHHHhccCCceEEEecccCCCCcchh----hhhccc----------------chhccchhhcc--CCC
Confidence 3699999999966666655442 2333332333322 222221 12456888553 334
Q ss_pred CCCccEEEEeccccCc---cCHHHHHHHHHHhcCCCeEEEEEEEEcChhHHHHHHHHHhc-CCeEEEecCC
Q 027530 143 APPFDYIIGTDVVYAE---HLLEPLLQTIFALSGPKTTILLGYEIRSTSVHEQMLQMWKS-NFNVKLVPKA 209 (222)
Q Consensus 143 ~~~fD~Ii~~d~~y~~---~~~~~ll~~~~~~l~~~g~~~l~~~~r~~~~~~~f~~~~~~-~~~v~~v~~~ 209 (222)
+.+||+|-++.++-.. -.+..++-.+.++|+|+|.++|-+.. .+..+.....+. .+++.....+
T Consensus 425 PRTYDLlHA~~lfs~~~~rC~~~~illEmDRILRP~G~~iiRD~~---~vl~~v~~i~~~lrW~~~~~d~e 492 (506)
T PF03141_consen 425 PRTYDLLHADGLFSLYKDRCEMEDILLEMDRILRPGGWVIIRDTV---DVLEKVKKIAKSLRWEVRIHDTE 492 (506)
T ss_pred CcchhheehhhhhhhhcccccHHHHHHHhHhhcCCCceEEEeccH---HHHHHHHHHHHhCcceEEEEecC
Confidence 7899999988776432 24677899999999999999984432 233333333332 4555555444
No 275
>PRK09424 pntA NAD(P) transhydrogenase subunit alpha; Provisional
Probab=95.86 E-value=0.13 Score=46.44 Aligned_cols=42 Identities=36% Similarity=0.479 Sum_probs=34.2
Q ss_pred CCCCCeEEEeCCCc-cHHHHHHHH-hCCEEEEecc-hhhHHHHHH
Q 027530 62 KLKGKRVIELGAGC-GVAGFGMAL-LGCNVITTDQ-IEVLPLLKR 103 (222)
Q Consensus 62 ~~~~~~vLelGcG~-G~~~i~la~-~g~~v~~~D~-~~~l~~~~~ 103 (222)
..++.+|+=+|||. |+.++..|+ +|++|+++|. ++.++.+++
T Consensus 162 ~~pg~kVlViGaG~iGL~Ai~~Ak~lGA~V~a~D~~~~rle~aes 206 (509)
T PRK09424 162 KVPPAKVLVIGAGVAGLAAIGAAGSLGAIVRAFDTRPEVAEQVES 206 (509)
T ss_pred CcCCCEEEEECCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHH
Confidence 45688999999997 999887775 5899999998 666666655
No 276
>PRK11524 putative methyltransferase; Provisional
Probab=95.83 E-value=0.036 Score=46.17 Aligned_cols=46 Identities=20% Similarity=0.134 Sum_probs=40.9
Q ss_pred CCCCCeEEEeCCCccHHHHHHHHhCCEEEEecc-hhhHHHHHHHHHH
Q 027530 62 KLKGKRVIELGAGCGVAGFGMALLGCNVITTDQ-IEVLPLLKRNVEW 107 (222)
Q Consensus 62 ~~~~~~vLelGcG~G~~~i~la~~g~~v~~~D~-~~~l~~~~~n~~~ 107 (222)
..+|..|||--||+|..++++.++|-+.+|+|+ ++.++.+++.+..
T Consensus 206 S~~GD~VLDPF~GSGTT~~AA~~lgR~~IG~Ei~~~Y~~~a~~Rl~~ 252 (284)
T PRK11524 206 SNPGDIVLDPFAGSFTTGAVAKASGRKFIGIEINSEYIKMGLRRLDV 252 (284)
T ss_pred CCCCCEEEECCCCCcHHHHHHHHcCCCEEEEeCCHHHHHHHHHHHHh
Confidence 458899999999999999999999999999999 6688888887753
No 277
>KOG2352 consensus Predicted spermine/spermidine synthase [Amino acid transport and metabolism]
Probab=95.80 E-value=0.045 Score=48.38 Aligned_cols=99 Identities=18% Similarity=0.280 Sum_probs=66.8
Q ss_pred CeEEEeCCCccHHHHHHHHhCCE-EEEecchh-hHHHHH-HHHHHhhccccccCCCCCCCCCceEEEEeecCCCcccccc
Q 027530 66 KRVIELGAGCGVAGFGMALLGCN-VITTDQIE-VLPLLK-RNVEWNTSRISQMNPGSGNLLGSIQAVELDWGNEDHIKAV 142 (222)
Q Consensus 66 ~~vLelGcG~G~~~i~la~~g~~-v~~~D~~~-~l~~~~-~n~~~n~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~ 142 (222)
-++|-+|||.--+..-+-.-|.+ |+.+|++. +++.+. .|+..+ ....+...|. ....+.
T Consensus 50 ~~~l~lGCGNS~l~e~ly~~G~~dI~~iD~S~V~V~~m~~~~~~~~---------------~~~~~~~~d~---~~l~fe 111 (482)
T KOG2352|consen 50 FKILQLGCGNSELSEHLYKNGFEDITNIDSSSVVVAAMQVRNAKER---------------PEMQMVEMDM---DQLVFE 111 (482)
T ss_pred ceeEeecCCCCHHHHHHHhcCCCCceeccccHHHHHHHHhccccCC---------------cceEEEEecc---hhccCC
Confidence 38999999999888877777875 99999965 666554 343221 2445555333 344556
Q ss_pred CCCccEEEEeccc----------cCccCHHHHHHHHHHhcCCCeEEEEEE
Q 027530 143 APPFDYIIGTDVV----------YAEHLLEPLLQTIFALSGPKTTILLGY 182 (222)
Q Consensus 143 ~~~fD~Ii~~d~~----------y~~~~~~~ll~~~~~~l~~~g~~~l~~ 182 (222)
+++||+||.=..+ ++.......+..+.++++++|+.+...
T Consensus 112 dESFdiVIdkGtlDal~~de~a~~~~~~v~~~~~eVsrvl~~~gk~~svt 161 (482)
T KOG2352|consen 112 DESFDIVIDKGTLDALFEDEDALLNTAHVSNMLDEVSRVLAPGGKYISVT 161 (482)
T ss_pred CcceeEEEecCccccccCCchhhhhhHHhhHHHhhHHHHhccCCEEEEEE
Confidence 7899999874443 222344557888889999999876543
No 278
>COG1064 AdhP Zn-dependent alcohol dehydrogenases [General function prediction only]
Probab=95.79 E-value=0.073 Score=45.36 Aligned_cols=95 Identities=26% Similarity=0.245 Sum_probs=57.4
Q ss_pred CCCCCCeEEEeCCCc-cHHHHHHHH-hCCEEEEecch-hhHHHHHHHHHHhhccccccCCCCCCCCCceEEEEeecCCCc
Q 027530 61 SKLKGKRVIELGAGC-GVAGFGMAL-LGCNVITTDQI-EVLPLLKRNVEWNTSRISQMNPGSGNLLGSIQAVELDWGNED 137 (222)
Q Consensus 61 ~~~~~~~vLelGcG~-G~~~i~la~-~g~~v~~~D~~-~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~v~~~~~d~~~~~ 137 (222)
...+|++|+=.|+|- |..++-+|+ +|++|+++|.+ +-++.+++--+ . .+. ++.+.+
T Consensus 163 ~~~pG~~V~I~G~GGlGh~avQ~Aka~ga~Via~~~~~~K~e~a~~lGA------------------d-~~i--~~~~~~ 221 (339)
T COG1064 163 NVKPGKWVAVVGAGGLGHMAVQYAKAMGAEVIAITRSEEKLELAKKLGA------------------D-HVI--NSSDSD 221 (339)
T ss_pred CCCCCCEEEEECCcHHHHHHHHHHHHcCCeEEEEeCChHHHHHHHHhCC------------------c-EEE--EcCCch
Confidence 345789999999982 557777776 79999999984 45555554211 1 112 222222
Q ss_pred cccccCCCccEEEEeccccCccCHHHHHHHHHHhcCCCeEEEEEEE
Q 027530 138 HIKAVAPPFDYIIGTDVVYAEHLLEPLLQTIFALSGPKTTILLGYE 183 (222)
Q Consensus 138 ~~~~~~~~fD~Ii~~d~~y~~~~~~~ll~~~~~~l~~~g~~~l~~~ 183 (222)
......+.||+|+..-. ...+....+.|+++|++.+...
T Consensus 222 ~~~~~~~~~d~ii~tv~-------~~~~~~~l~~l~~~G~~v~vG~ 260 (339)
T COG1064 222 ALEAVKEIADAIIDTVG-------PATLEPSLKALRRGGTLVLVGL 260 (339)
T ss_pred hhHHhHhhCcEEEECCC-------hhhHHHHHHHHhcCCEEEEECC
Confidence 22222345999985422 4455566667788888776543
No 279
>PF10237 N6-adenineMlase: Probable N6-adenine methyltransferase; InterPro: IPR019369 This family of proteins, which are of approximately 200 residues in length, contain a highly conserved Glu-Phe-Trp (QFW) motif close to the N terminus and an Asp/Asn-Pro-Pro-Tyr/Phe motif in the centre. This latter motif is characteristic of N-6 adenine-specific DNA methylases and could be involved in substrate binding or in the catalytic activity (, ).
Probab=95.77 E-value=0.078 Score=40.44 Aligned_cols=117 Identities=15% Similarity=0.135 Sum_probs=77.8
Q ss_pred hHHHHHHHHhhhccCCCCCCCCCCCCeEEEeCCCccHHHHHH-HHhCCEEEEecchhhHHHHHHHHHHhhccccccCCCC
Q 027530 41 ASVVFVKYLEKNCRKGRFCPSKLKGKRVIELGAGCGVAGFGM-ALLGCNVITTDQIEVLPLLKRNVEWNTSRISQMNPGS 119 (222)
Q Consensus 41 ~~~~la~~l~~~~~~~~~~~~~~~~~~vLelGcG~G~~~i~l-a~~g~~v~~~D~~~~l~~~~~n~~~n~~~~~~~~~~~ 119 (222)
++..|++.+.+. ...+.+|+=|||=+-...+.- ...+.++++.|++.-.... +
T Consensus 11 T~~~l~~~l~~~---------~~~~~~iaclstPsl~~~l~~~~~~~~~~~Lle~D~RF~~~-------~---------- 64 (162)
T PF10237_consen 11 TAEFLARELLDG---------ALDDTRIACLSTPSLYEALKKESKPRIQSFLLEYDRRFEQF-------G---------- 64 (162)
T ss_pred HHHHHHHHHHHh---------cCCCCEEEEEeCcHHHHHHHhhcCCCccEEEEeecchHHhc-------C----------
Confidence 456777777653 224578999988755444443 1124469999986511110 0
Q ss_pred CCCCCceEEEEeecCCCcccc-ccCCCccEEEEeccccCccCHHHHHHHHHHhcCCCeEEEEEEEEcChh
Q 027530 120 GNLLGSIQAVELDWGNEDHIK-AVAPPFDYIIGTDVVYAEHLLEPLLQTIFALSGPKTTILLGYEIRSTS 188 (222)
Q Consensus 120 ~~~~~~v~~~~~d~~~~~~~~-~~~~~fD~Ii~~d~~y~~~~~~~ll~~~~~~l~~~g~~~l~~~~r~~~ 188 (222)
++ .+...|.......+ ...++||+||+-+++...+.......++..++++++.++++...+...
T Consensus 65 ----~~-~F~fyD~~~p~~~~~~l~~~~d~vv~DPPFl~~ec~~k~a~ti~~L~k~~~kii~~Tg~~~~~ 129 (162)
T PF10237_consen 65 ----GD-EFVFYDYNEPEELPEELKGKFDVVVIDPPFLSEECLTKTAETIRLLLKPGGKIILCTGEEMEE 129 (162)
T ss_pred ----Cc-ceEECCCCChhhhhhhcCCCceEEEECCCCCCHHHHHHHHHHHHHHhCccceEEEecHHHHHH
Confidence 12 35556655554433 235799999999999778888889999999999999999888655443
No 280
>PF04445 SAM_MT: Putative SAM-dependent methyltransferase; InterPro: IPR007536 This family of proteins is functionally uncharacterised.; PDB: 2PGX_A 2OYR_A 2R6Z_A 2PKW_A.
Probab=95.67 E-value=0.051 Score=43.88 Aligned_cols=85 Identities=22% Similarity=0.300 Sum_probs=43.8
Q ss_pred CeEEEeCCCccHHHHHHHHhCCEEEEecchh-hHHHHHHHHHHhhccccccCCCCCCCCCceEEEEeecCCCccccccCC
Q 027530 66 KRVIELGAGCGVAGFGMALLGCNVITTDQIE-VLPLLKRNVEWNTSRISQMNPGSGNLLGSIQAVELDWGNEDHIKAVAP 144 (222)
Q Consensus 66 ~~vLelGcG~G~~~i~la~~g~~v~~~D~~~-~l~~~~~n~~~n~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~ 144 (222)
.+|||.-+|.|.-++.+|..|++|++++.+. +-..++.-++......... .....++++...|..+... ....
T Consensus 77 ~~VLDaTaGLG~Da~vlA~~G~~V~~lErspvia~Ll~dGL~r~~~~~~~~----~~~~~ri~l~~~d~~~~L~--~~~~ 150 (234)
T PF04445_consen 77 PSVLDATAGLGRDAFVLASLGCKVTGLERSPVIAALLKDGLKRAQQDPELL----AEAMRRIQLIHGDALEYLR--QPDN 150 (234)
T ss_dssp --EEETT-TTSHHHHHHHHHT--EEEEE--HHHHHHHHHHHHHHHHSTTTH----HHHHHHEEEEES-CCCHCC--CHSS
T ss_pred CEEEECCCcchHHHHHHHccCCeEEEEECCHHHHHHHHHHHHHHHhCcHhH----HHHHhCCEEEcCCHHHHHh--hcCC
Confidence 4899999999999999999999999999854 3333343333221100000 0012477888766554322 3467
Q ss_pred CccEEEEeccccC
Q 027530 145 PFDYIIGTDVVYA 157 (222)
Q Consensus 145 ~fD~Ii~~d~~y~ 157 (222)
+||+|.. |++|-
T Consensus 151 s~DVVY~-DPMFp 162 (234)
T PF04445_consen 151 SFDVVYF-DPMFP 162 (234)
T ss_dssp --SEEEE---S--
T ss_pred CCCEEEE-CCCCC
Confidence 9999997 45554
No 281
>KOG4589 consensus Cell division protein FtsJ [Cell cycle control, cell division, chromosome partitioning]
Probab=95.66 E-value=0.28 Score=38.29 Aligned_cols=33 Identities=18% Similarity=0.004 Sum_probs=27.5
Q ss_pred CCCCCeEEEeCCCccHHHHHHHHhC-C--EEEEecc
Q 027530 62 KLKGKRVIELGAGCGVAGFGMALLG-C--NVITTDQ 94 (222)
Q Consensus 62 ~~~~~~vLelGcG~G~~~i~la~~g-~--~v~~~D~ 94 (222)
..++.+|||+||-.|..+..+-++. . .|.++|+
T Consensus 67 l~p~~~VlD~G~APGsWsQVavqr~~p~g~v~gVDl 102 (232)
T KOG4589|consen 67 LRPEDTVLDCGAAPGSWSQVAVQRVNPNGMVLGVDL 102 (232)
T ss_pred cCCCCEEEEccCCCChHHHHHHHhhCCCceEEEEee
Confidence 3467899999999999999888774 3 4899996
No 282
>KOG2198 consensus tRNA cytosine-5-methylases and related enzymes of the NOL1/NOP2/sun superfamily [Translation, ribosomal structure and biogenesis]
Probab=95.63 E-value=0.42 Score=40.99 Aligned_cols=135 Identities=16% Similarity=0.103 Sum_probs=75.6
Q ss_pred CCCCCCeEEEeCCCccHHHHHHHHhCC------EEEEecch-hhHHHHHHHHHHhhccccccCCCCCCCCCceEEEEeec
Q 027530 61 SKLKGKRVIELGAGCGVAGFGMALLGC------NVITTDQI-EVLPLLKRNVEWNTSRISQMNPGSGNLLGSIQAVELDW 133 (222)
Q Consensus 61 ~~~~~~~vLelGcG~G~~~i~la~~g~------~v~~~D~~-~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~v~~~~~d~ 133 (222)
...+|.+|||+++-.|-=++.+.+..+ .|++-|.+ .-+..++.-+.+-. ..++.+...+.
T Consensus 152 ~v~p~~~VLDmCAAPG~Kt~qLLeal~~~~~~g~vvaND~d~~R~~~L~~q~~~l~-------------~~~~~v~~~~~ 218 (375)
T KOG2198|consen 152 GVKPGDKVLDMCAAPGGKTAQLLEALHKDPTRGYVVANDVDPKRLNMLVHQLKRLP-------------SPNLLVTNHDA 218 (375)
T ss_pred ccCCCCeeeeeccCCCccHHHHHHHHhcCCCCCeeEecccCHHHHHHHHHHHhccC-------------Ccceeeecccc
Confidence 345788999999999977766655433 68999984 34444433332211 12223332222
Q ss_pred CCCccc------cccCCCccEEEEe-----ccccCcc------------------CHHHHHHHHHHhcCCCeEEEEEE--
Q 027530 134 GNEDHI------KAVAPPFDYIIGT-----DVVYAEH------------------LLEPLLQTIFALSGPKTTILLGY-- 182 (222)
Q Consensus 134 ~~~~~~------~~~~~~fD~Ii~~-----d~~y~~~------------------~~~~ll~~~~~~l~~~g~~~l~~-- 182 (222)
...... +.....||-|++- |...... ..-.++..-.++|++||+++.++
T Consensus 219 ~~~p~~~~~~~~~~~~~~fDrVLvDVPCS~Dgt~rk~~~i~~~~w~~~~~~~L~~LQ~~iL~rgl~lLk~GG~lVYSTCS 298 (375)
T KOG2198|consen 219 SLFPNIYLKDGNDKEQLKFDRVLVDVPCSGDGTLRKNPNIWKEGWKTQRALGLHALQLRILRRGLRLLKVGGRLVYSTCS 298 (375)
T ss_pred eeccccccccCchhhhhhcceeEEecccCCCcccccCchHhhhhhhhhhccCChHHHHHHHHHHHHHhcCCCEEEEeccC
Confidence 221111 1123578888752 2221110 12236666778899999987765
Q ss_pred --EEcChhHHHHHHHHHhcCCeEEEecC
Q 027530 183 --EIRSTSVHEQMLQMWKSNFNVKLVPK 208 (222)
Q Consensus 183 --~~r~~~~~~~f~~~~~~~~~v~~v~~ 208 (222)
+.++..+.+..++.+...+.+..+..
T Consensus 299 LnpieNEaVV~~~L~~~~~~~~lv~~~~ 326 (375)
T KOG2198|consen 299 LNPIENEAVVQEALQKVGGAVELVDVSG 326 (375)
T ss_pred CCchhhHHHHHHHHHHhcCcccceeecc
Confidence 45666677777877766665544433
No 283
>PRK13699 putative methylase; Provisional
Probab=95.40 E-value=0.075 Score=42.84 Aligned_cols=45 Identities=13% Similarity=0.023 Sum_probs=39.1
Q ss_pred CCCCeEEEeCCCccHHHHHHHHhCCEEEEecc-hhhHHHHHHHHHH
Q 027530 63 LKGKRVIELGAGCGVAGFGMALLGCNVITTDQ-IEVLPLLKRNVEW 107 (222)
Q Consensus 63 ~~~~~vLelGcG~G~~~i~la~~g~~v~~~D~-~~~l~~~~~n~~~ 107 (222)
.+|..|||--||+|..++++.++|.+.+++|+ ++..+.+.+.++.
T Consensus 162 ~~g~~vlDpf~Gsgtt~~aa~~~~r~~~g~e~~~~y~~~~~~r~~~ 207 (227)
T PRK13699 162 HPNAIVLDPFAGSGSTCVAALQSGRRYIGIELLEQYHRAGQQRLAA 207 (227)
T ss_pred CCCCEEEeCCCCCCHHHHHHHHcCCCEEEEecCHHHHHHHHHHHHH
Confidence 47889999999999999999999999999999 6677887776654
No 284
>COG2961 ComJ Protein involved in catabolism of external DNA [General function prediction only]
Probab=95.37 E-value=0.29 Score=39.73 Aligned_cols=140 Identities=11% Similarity=0.088 Sum_probs=96.5
Q ss_pred cccch---HHHHHHHHhhhccCCCCCCCCCCCCeEEEeCCCccHHHHHHHHhCCEEEEecc-hhhHHHHHHHHHHhhccc
Q 027530 37 TVWDA---SVVFVKYLEKNCRKGRFCPSKLKGKRVIELGAGCGVAGFGMALLGCNVITTDQ-IEVLPLLKRNVEWNTSRI 112 (222)
Q Consensus 37 ~~W~~---~~~la~~l~~~~~~~~~~~~~~~~~~vLelGcG~G~~~i~la~~g~~v~~~D~-~~~l~~~~~n~~~n~~~~ 112 (222)
++|.. ...|..|+..- .....+.+ |..=||+-.++-.+.+..-++.++++ ++=...++.|+..
T Consensus 66 RL~~a~~lpa~l~~yl~~i-------~~lN~~~~-l~~YpGSP~lA~~llR~qDRl~l~ELHp~D~~~L~~~f~~----- 132 (279)
T COG2961 66 RLWQAADLPAELEPYLDAV-------RQLNPGGG-LRYYPGSPLLARQLLREQDRLVLTELHPSDAPLLRNNFAG----- 132 (279)
T ss_pred HHHhcCCchHHHHHHHHHH-------HHhCCCCC-cccCCCCHHHHHHHcchhceeeeeecCccHHHHHHHHhCC-----
Confidence 46653 44666777654 12334433 88889998888888887788999998 7766777777772
Q ss_pred cccCCCCCCCCCceEEEEeec-CCCccccccCCCccEEEEeccccCccCHHHHHHHHHHhcC--CCeEEEEEEEEcChhH
Q 027530 113 SQMNPGSGNLLGSIQAVELDW-GNEDHIKAVAPPFDYIIGTDVVYAEHLLEPLLQTIFALSG--PKTTILLGYEIRSTSV 189 (222)
Q Consensus 113 ~~~~~~~~~~~~~v~~~~~d~-~~~~~~~~~~~~fD~Ii~~d~~y~~~~~~~ll~~~~~~l~--~~g~~~l~~~~r~~~~ 189 (222)
..++++.+.|= ...-...++.++=-+|+--+++........+++++.+.++ ++|+..|=++......
T Consensus 133 ----------d~~vrv~~~DG~~~l~a~LPP~erRglVLIDPPfE~~~eY~rvv~~l~~~~kRf~~g~yaiWYPik~r~~ 202 (279)
T COG2961 133 ----------DRRVRVLRGDGFLALKAHLPPKERRGLVLIDPPFELKDEYQRVVEALAEAYKRFATGTYAIWYPIKDRRQ 202 (279)
T ss_pred ----------CcceEEEecCcHHHHhhhCCCCCcceEEEeCCCcccccHHHHHHHHHHHHHHhhcCceEEEEEeecchHH
Confidence 24677776441 1111111224455677777777777889999999999877 7888888888877766
Q ss_pred HHHHHHHHhc
Q 027530 190 HEQMLQMWKS 199 (222)
Q Consensus 190 ~~~f~~~~~~ 199 (222)
...|++.++.
T Consensus 203 ~~~f~~~L~~ 212 (279)
T COG2961 203 IRRFLRALEA 212 (279)
T ss_pred HHHHHHHHhh
Confidence 7888888764
No 285
>PF00145 DNA_methylase: C-5 cytosine-specific DNA methylase; InterPro: IPR001525 C-5 cytosine-specific DNA methylases (2.1.1.37 from EC) (C5 Mtase) are enzymes that specifically methylate the C-5 carbon of cytosines in DNA to produce C5-methylcytosine [, , ]. In mammalian cells, cytosine-specific methyltransferases methylate certain CpG sequences, which are believed to modulate gene expression and cell differentiation. In bacteria, these enzymes are a component of restriction-modification systems and serve as valuable tools for the manipulation of DNA [, ]. The structure of HhaI methyltransferase (M.HhaI) has been resolved to 2.5 A []: the molecule folds into 2 domains - a larger catalytic domain containing catalytic and cofactor binding sites, and a smaller DNA recognition domain.; GO: 0003677 DNA binding, 0006306 DNA methylation; PDB: 4DA4_A 3PT6_B 3AV6_A 3AV5_A 3AV4_A 3PT9_A 1DCT_A 3LX6_A 3ME5_A 2QRV_A ....
Probab=95.34 E-value=0.026 Score=47.47 Aligned_cols=40 Identities=25% Similarity=0.341 Sum_probs=33.2
Q ss_pred eEEEeCCCccHHHHHHHHhCCE-EEEecc-hhhHHHHHHHHH
Q 027530 67 RVIELGAGCGVAGFGMALLGCN-VITTDQ-IEVLPLLKRNVE 106 (222)
Q Consensus 67 ~vLelGcG~G~~~i~la~~g~~-v~~~D~-~~~l~~~~~n~~ 106 (222)
+++||.||.|..++.+.+.|.+ |.++|+ +.+.+..+.|..
T Consensus 2 ~~~dlFsG~Gg~~~g~~~ag~~~~~a~e~~~~a~~~y~~N~~ 43 (335)
T PF00145_consen 2 KVIDLFSGIGGFSLGLEQAGFEVVWAVEIDPDACETYKANFP 43 (335)
T ss_dssp EEEEET-TTTHHHHHHHHTTEEEEEEEESSHHHHHHHHHHHT
T ss_pred cEEEEccCccHHHHHHHhcCcEEEEEeecCHHHHHhhhhccc
Confidence 6999999999999999999987 779999 557777777765
No 286
>KOG1227 consensus Putative methyltransferase [General function prediction only]
Probab=95.05 E-value=0.017 Score=47.95 Aligned_cols=97 Identities=21% Similarity=0.154 Sum_probs=63.9
Q ss_pred CCCeEEEeCCCccHHHH-HHHHhCCE-EEEecc-hhhHHHHHHHHHHhhccccccCCCCCCCCCceEEEEeecCCCcccc
Q 027530 64 KGKRVIELGAGCGVAGF-GMALLGCN-VITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSGNLLGSIQAVELDWGNEDHIK 140 (222)
Q Consensus 64 ~~~~vLelGcG~G~~~i-~la~~g~~-v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~ 140 (222)
.+..|.||-+|.|.+.+ .+...||+ |++.|. +.+++.+++|++.|++. .+..+..+| ....
T Consensus 194 ~~eviVDLYAGIGYFTlpflV~agAk~V~A~EwNp~svEaLrR~~~~N~V~------------~r~~i~~gd----~R~~ 257 (351)
T KOG1227|consen 194 DGEVIVDLYAGIGYFTLPFLVTAGAKTVFACEWNPWSVEALRRNAEANNVM------------DRCRITEGD----NRNP 257 (351)
T ss_pred ccchhhhhhcccceEEeehhhccCccEEEEEecCHHHHHHHHHHHHhcchH------------HHHHhhhcc----cccc
Confidence 45789999999999999 88888986 999998 88999999999999754 233333322 1122
Q ss_pred ccCCCccEEEEeccccCccCHHHHHHHHHHhcCCCeEEE
Q 027530 141 AVAPPFDYIIGTDVVYAEHLLEPLLQTIFALSGPKTTIL 179 (222)
Q Consensus 141 ~~~~~fD~Ii~~d~~y~~~~~~~ll~~~~~~l~~~g~~~ 179 (222)
.++...|-|... .+ ++.-..+..+++.+-..||.++
T Consensus 258 ~~~~~AdrVnLG-Ll--PSse~~W~~A~k~Lk~eggsil 293 (351)
T KOG1227|consen 258 KPRLRADRVNLG-LL--PSSEQGWPTAIKALKPEGGSIL 293 (351)
T ss_pred Cccccchheeec-cc--cccccchHHHHHHhhhcCCcEE
Confidence 235566766543 22 3444445555554444455333
No 287
>KOG1331 consensus Predicted methyltransferase [General function prediction only]
Probab=95.03 E-value=0.034 Score=45.90 Aligned_cols=112 Identities=17% Similarity=0.191 Sum_probs=67.2
Q ss_pred cccccccchHHHHHHHHhhhccCCCCCCCCCCCCeEEEeCCCccHHHHHHHHhCCEEEEecchh-hHHHHHHHHHHhhcc
Q 027530 33 HLGTTVWDASVVFVKYLEKNCRKGRFCPSKLKGKRVIELGAGCGVAGFGMALLGCNVITTDQIE-VLPLLKRNVEWNTSR 111 (222)
Q Consensus 33 ~~g~~~W~~~~~la~~l~~~~~~~~~~~~~~~~~~vLelGcG~G~~~i~la~~g~~v~~~D~~~-~l~~~~~n~~~n~~~ 111 (222)
.+-...||-.. +|+... -.|..++|.|||.|-....- -...+++.|... .+.-+++. +.
T Consensus 27 ~tr~~~Wp~v~---qfl~~~----------~~gsv~~d~gCGngky~~~~--p~~~~ig~D~c~~l~~~ak~~---~~-- 86 (293)
T KOG1331|consen 27 ATRAAPWPMVR---QFLDSQ----------PTGSVGLDVGCGNGKYLGVN--PLCLIIGCDLCTGLLGGAKRS---GG-- 86 (293)
T ss_pred ccccCccHHHH---HHHhcc----------CCcceeeecccCCcccCcCC--CcceeeecchhhhhccccccC---CC--
Confidence 34556787443 444322 13788999999998322111 112478888744 44444321 10
Q ss_pred ccccCCCCCCCCCceEEEEeecCCCccccccCCCccEEEEeccccCccC---HHHHHHHHHHhcCCCeEEEEE
Q 027530 112 ISQMNPGSGNLLGSIQAVELDWGNEDHIKAVAPPFDYIIGTDVVYAEHL---LEPLLQTIFALSGPKTTILLG 181 (222)
Q Consensus 112 ~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~fD~Ii~~d~~y~~~~---~~~ll~~~~~~l~~~g~~~l~ 181 (222)
. ... ..+....+.....||.+++.-+++|... ...+++.+.+.++|||.+.+-
T Consensus 87 ------------~--~~~---~ad~l~~p~~~~s~d~~lsiavihhlsT~~RR~~~l~e~~r~lrpgg~~lvy 142 (293)
T KOG1331|consen 87 ------------D--NVC---RADALKLPFREESFDAALSIAVIHHLSTRERRERALEELLRVLRPGGNALVY 142 (293)
T ss_pred ------------c--eee---hhhhhcCCCCCCccccchhhhhhhhhhhHHHHHHHHHHHHHHhcCCCceEEE
Confidence 0 111 1222334445789999999999988654 345788888889999986653
No 288
>KOG3350 consensus Uncharacterized conserved protein [Function unknown]
Probab=94.79 E-value=0.066 Score=41.12 Aligned_cols=90 Identities=16% Similarity=0.156 Sum_probs=61.0
Q ss_pred EEEEeecCCCcccc-ccCCCccEEEEeccccCccCHHHHHHHHHHhcCCCeEEEEEEEEcChhHHHHHHHHHhcCCeEEE
Q 027530 127 QAVELDWGNEDHIK-AVAPPFDYIIGTDVVYAEHLLEPLLQTIFALSGPKTTILLGYEIRSTSVHEQMLQMWKSNFNVKL 205 (222)
Q Consensus 127 ~~~~~d~~~~~~~~-~~~~~fD~Ii~~d~~y~~~~~~~ll~~~~~~l~~~g~~~l~~~~r~~~~~~~f~~~~~~~~~v~~ 205 (222)
.|+..|+..+.+++ ....+||+||+-+++-..+.+.+--.+++.+.++.-+++++...+-.......+.+.+-.|..+
T Consensus 116 eFvfYDyN~p~dlp~~lk~~fdiivaDPPfL~~eCl~Kts~tik~L~r~~~kvilCtGeimee~~s~~l~~~~~sF~Pe- 194 (217)
T KOG3350|consen 116 EFVFYDYNCPLDLPDELKAHFDIIVADPPFLSEECLAKTSETIKRLQRNQKKVILCTGEIMEEWASALLPVLKCSFRPE- 194 (217)
T ss_pred eeEEeccCCCCCCHHHHHhcccEEEeCCccccchhhhhhHHHHHHHhcCCceEEEechhHhHHHHHHHhhhhhccccch-
Confidence 56666776655443 2356799999999988888888899999999999999999887655544444444333445443
Q ss_pred ecCCCCCcccCCC
Q 027530 206 VPKAKESTMWGNP 218 (222)
Q Consensus 206 v~~~~~~~~~~~~ 218 (222)
...-+...|++-
T Consensus 195 -H~~nLaNeF~cy 206 (217)
T KOG3350|consen 195 -HERNLANEFRCY 206 (217)
T ss_pred -hhcccccceeEE
Confidence 233455555553
No 289
>KOG1596 consensus Fibrillarin and related nucleolar RNA-binding proteins [RNA processing and modification]
Probab=94.68 E-value=0.72 Score=37.47 Aligned_cols=60 Identities=17% Similarity=0.183 Sum_probs=36.4
Q ss_pred cccccccchHH-HHHHHHhhhccCCCCCCCCCCCCeEEEeCCCccHHH-HHHHHhCCE--EEEecchh
Q 027530 33 HLGTTVWDASV-VFVKYLEKNCRKGRFCPSKLKGKRVIELGAGCGVAG-FGMALLGCN--VITTDQIE 96 (222)
Q Consensus 33 ~~g~~~W~~~~-~la~~l~~~~~~~~~~~~~~~~~~vLelGcG~G~~~-i~la~~g~~--v~~~D~~~ 96 (222)
.+-.++|..-. .||.-+.--+ =+.+..+|.+||=||+++|..- ...-.-|.+ |++++.++
T Consensus 128 kvEyRVWnPfrSKLAA~I~gGv----dnihikpGsKVLYLGAasGttVSHvSDiVGpeG~VYAVEfs~ 191 (317)
T KOG1596|consen 128 KVEYRVWNPFRSKLAAGILGGV----DNIHIKPGSKVLYLGAASGTTVSHVSDIVGPEGCVYAVEFSH 191 (317)
T ss_pred cEEEEEeChHHHHHHHHhhcCc----cceeecCCceEEEeeccCCceeehhhcccCCCceEEEEEecc
Confidence 67778998532 2333332211 0124568899999999999743 333334554 88888743
No 290
>TIGR00006 S-adenosyl-methyltransferase MraW. Genetics paper in 1972 links mra cluster to peptidoglycan biosynthesis in E. coli. Seems to be common in proteobacteria.wn.
Probab=94.58 E-value=0.2 Score=42.19 Aligned_cols=45 Identities=13% Similarity=0.075 Sum_probs=37.2
Q ss_pred CCCCeEEEeCCCccHHHHHHHHh--CCEEEEecc-hhhHHHHHHHHHH
Q 027530 63 LKGKRVIELGAGCGVAGFGMALL--GCNVITTDQ-IEVLPLLKRNVEW 107 (222)
Q Consensus 63 ~~~~~vLelGcG~G~~~i~la~~--g~~v~~~D~-~~~l~~~~~n~~~ 107 (222)
.+|..++|.-+|.|--+..+++. ..+|+++|. ++++..+++.++.
T Consensus 19 ~~ggiyVD~TlG~GGHS~~iL~~l~~g~vigiD~D~~Al~~ak~~L~~ 66 (305)
T TIGR00006 19 KPDGIYIDCTLGFGGHSKAILEQLGTGRLIGIDRDPQAIAFAKERLSD 66 (305)
T ss_pred CCCCEEEEeCCCChHHHHHHHHhCCCCEEEEEcCCHHHHHHHHHHHhh
Confidence 46679999999999888877765 368999999 6799999888764
No 291
>COG0270 Dcm Site-specific DNA methylase [DNA replication, recombination, and repair]
Probab=94.30 E-value=0.11 Score=44.25 Aligned_cols=41 Identities=27% Similarity=0.356 Sum_probs=35.0
Q ss_pred CeEEEeCCCccHHHHHHHHhCCE-EEEecc-hhhHHHHHHHHH
Q 027530 66 KRVIELGAGCGVAGFGMALLGCN-VITTDQ-IEVLPLLKRNVE 106 (222)
Q Consensus 66 ~~vLelGcG~G~~~i~la~~g~~-v~~~D~-~~~l~~~~~n~~ 106 (222)
.+++||.||.|-+++.+...|.+ +.+.|+ +.+++.-+.|..
T Consensus 4 ~~~idLFsG~GG~~lGf~~agf~~~~a~Eid~~a~~ty~~n~~ 46 (328)
T COG0270 4 MKVIDLFAGIGGLSLGFEEAGFEIVFANEIDPPAVATYKANFP 46 (328)
T ss_pred ceEEeeccCCchHHHHHHhcCCeEEEEEecCHHHHHHHHHhCC
Confidence 58999999999999999999998 668898 568888777766
No 292
>COG1063 Tdh Threonine dehydrogenase and related Zn-dependent dehydrogenases [Amino acid transport and metabolism / General function prediction only]
Probab=94.15 E-value=0.25 Score=42.40 Aligned_cols=98 Identities=24% Similarity=0.246 Sum_probs=58.5
Q ss_pred CCCCeEEEeCCCc-cHHHHHHHHh-CC-EEEEecc-hhhHHHHHHHHHHhhccccccCCCCCCCCCceEEEEeecCCCcc
Q 027530 63 LKGKRVIELGAGC-GVAGFGMALL-GC-NVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSGNLLGSIQAVELDWGNEDH 138 (222)
Q Consensus 63 ~~~~~vLelGcG~-G~~~i~la~~-g~-~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~ 138 (222)
..+.+|+=+|||+ |++++.+++. |+ +|+++|. ++-++.|++-..... +....-+ .....
T Consensus 167 ~~~~~V~V~GaGpIGLla~~~a~~~Ga~~Viv~d~~~~Rl~~A~~~~g~~~----------------~~~~~~~-~~~~~ 229 (350)
T COG1063 167 RPGGTVVVVGAGPIGLLAIALAKLLGASVVIVVDRSPERLELAKEAGGADV----------------VVNPSED-DAGAE 229 (350)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHcCCceEEEeCCCHHHHHHHHHhCCCeE----------------eecCccc-cHHHH
Confidence 3444999999998 9998877765 65 6999998 667777765221100 0000000 00000
Q ss_pred c-cc-cCCCccEEEEeccccCccCHHHHHHHHHHhcCCCeEEEEEEE
Q 027530 139 I-KA-VAPPFDYIIGTDVVYAEHLLEPLLQTIFALSGPKTTILLGYE 183 (222)
Q Consensus 139 ~-~~-~~~~fD~Ii~~d~~y~~~~~~~ll~~~~~~l~~~g~~~l~~~ 183 (222)
. .. ....+|+++=+-- ....+..+.++++|+|.+.+..-
T Consensus 230 ~~~~t~g~g~D~vie~~G------~~~~~~~ai~~~r~gG~v~~vGv 270 (350)
T COG1063 230 ILELTGGRGADVVIEAVG------SPPALDQALEALRPGGTVVVVGV 270 (350)
T ss_pred HHHHhCCCCCCEEEECCC------CHHHHHHHHHHhcCCCEEEEEec
Confidence 0 11 1236999874322 34577888888999998876543
No 293
>COG0286 HsdM Type I restriction-modification system methyltransferase subunit [Defense mechanisms]
Probab=93.97 E-value=0.82 Score=41.22 Aligned_cols=105 Identities=15% Similarity=0.084 Sum_probs=66.3
Q ss_pred CCCeEEEeCCCccHHHHHHHH-hC-----CEEEEecc-hhhHHHHHHHHHHhhccccccCCCCCCCCCceEEEEeecCCC
Q 027530 64 KGKRVIELGAGCGVAGFGMAL-LG-----CNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSGNLLGSIQAVELDWGNE 136 (222)
Q Consensus 64 ~~~~vLelGcG~G~~~i~la~-~g-----~~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~v~~~~~d~~~~ 136 (222)
...+|.|-.||+|-.-+.+++ .+ ..++|.+. +.....++.|+-.++... .+.... ++.
T Consensus 186 ~~~~i~DpacGsgg~l~~a~~~~~~~~~~~~~yGqE~~~~t~~l~~mN~~lhgi~~------------~~~i~~---~dt 250 (489)
T COG0286 186 PRNSIYDPACGSGGMLLQAAKYLKRHQDEIFIYGQEINDTTYRLAKMNLILHGIEG------------DANIRH---GDT 250 (489)
T ss_pred CCCeecCCCCchhHHHHHHHHHHHhhccceeEEEEeCCHHHHHHHHHHHHHhCCCc------------cccccc---ccc
Confidence 445899999999854433332 22 34889997 669999999999988641 111111 111
Q ss_pred ccc-----cccCCCccEEEEeccccCc-------------------------cCHHHHHHHHHHhcCCCeEEEEEEE
Q 027530 137 DHI-----KAVAPPFDYIIGTDVVYAE-------------------------HLLEPLLQTIFALSGPKTTILLGYE 183 (222)
Q Consensus 137 ~~~-----~~~~~~fD~Ii~~d~~y~~-------------------------~~~~~ll~~~~~~l~~~g~~~l~~~ 183 (222)
... .....+||+|++++++... ..-..++..+...|+|+|++-++.+
T Consensus 251 l~~~~~~~~~~~~~~D~viaNPPf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~af~~h~~~~l~~~g~aaivl~ 327 (489)
T COG0286 251 LSNPKHDDKDDKGKFDFVIANPPFSGKGWGGDLLESEQDERFFFYGVFPTKNSADLAFLQHILYKLKPGGRAAIVLP 327 (489)
T ss_pred ccCCcccccCCccceeEEEeCCCCCccccccccccccccccccccCCCCCCCchHHHHHHHHHHhcCCCceEEEEec
Confidence 111 1134679999999998510 0125588888888999876655443
No 294
>PRK09880 L-idonate 5-dehydrogenase; Provisional
Probab=93.89 E-value=1.6 Score=37.08 Aligned_cols=95 Identities=21% Similarity=0.216 Sum_probs=53.4
Q ss_pred CCCCeEEEeCCCc-cHHHHHHHHh-CC-EEEEecc-hhhHHHHHHHHHHhhccccccCCCCCCCCCceEEEEeecCCCcc
Q 027530 63 LKGKRVIELGAGC-GVAGFGMALL-GC-NVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSGNLLGSIQAVELDWGNEDH 138 (222)
Q Consensus 63 ~~~~~vLelGcG~-G~~~i~la~~-g~-~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~ 138 (222)
.+|++||=.|||. |+.++.+|+. |+ +|+++|. ++-++.+++ -+.. .-+.....++. .
T Consensus 168 ~~g~~VlV~G~G~vG~~aiqlak~~G~~~Vi~~~~~~~~~~~a~~----lGa~------------~vi~~~~~~~~---~ 228 (343)
T PRK09880 168 LQGKRVFVSGVGPIGCLIVAAVKTLGAAEIVCADVSPRSLSLARE----MGAD------------KLVNPQNDDLD---H 228 (343)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHcCCcEEEEEeCCHHHHHHHHH----cCCc------------EEecCCcccHH---H
Confidence 4688999999875 6666666654 77 5889997 555555543 1211 00000000111 1
Q ss_pred ccccCCCccEEEEeccccCccCHHHHHHHHHHhcCCCeEEEEEE
Q 027530 139 IKAVAPPFDYIIGTDVVYAEHLLEPLLQTIFALSGPKTTILLGY 182 (222)
Q Consensus 139 ~~~~~~~fD~Ii~~d~~y~~~~~~~ll~~~~~~l~~~g~~~l~~ 182 (222)
.....+.+|+|+-+ . -....+....++++++|++++..
T Consensus 229 ~~~~~g~~D~vid~--~----G~~~~~~~~~~~l~~~G~iv~~G 266 (343)
T PRK09880 229 YKAEKGYFDVSFEV--S----GHPSSINTCLEVTRAKGVMVQVG 266 (343)
T ss_pred HhccCCCCCEEEEC--C----CCHHHHHHHHHHhhcCCEEEEEc
Confidence 11112358988743 2 11345667778889999887654
No 295
>PF07091 FmrO: Ribosomal RNA methyltransferase (FmrO); PDB: 3LCU_A 3LCV_B 3FRH_A 3FRI_A 3B89_A 3FZG_A.
Probab=93.88 E-value=0.33 Score=39.51 Aligned_cols=103 Identities=16% Similarity=0.137 Sum_probs=57.7
Q ss_pred CCeEEEeCCCccHHHHHHHHh--CCEEEEecc-hhhHHHHHHHHHHhhccccccCCCCCCCCCceEEEEeecCCCccccc
Q 027530 65 GKRVIELGAGCGVAGFGMALL--GCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSGNLLGSIQAVELDWGNEDHIKA 141 (222)
Q Consensus 65 ~~~vLelGcG~G~~~i~la~~--g~~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~ 141 (222)
..+|+|||||.=-+++..... ++.+++.|+ ..+++.+..-+..-+. ..++...|.... .
T Consensus 106 p~sVlDigCGlNPlalp~~~~~~~a~Y~a~DID~~~ve~l~~~l~~l~~--------------~~~~~v~Dl~~~----~ 167 (251)
T PF07091_consen 106 PDSVLDIGCGLNPLALPWMPEAPGATYIAYDIDSQLVEFLNAFLAVLGV--------------PHDARVRDLLSD----P 167 (251)
T ss_dssp -SEEEEET-TTCHHHHHTTTSSTT-EEEEEESBHHHHHHHHHHHHHTT---------------CEEEEEE-TTTS----H
T ss_pred CchhhhhhccCCceehhhcccCCCcEEEEEeCCHHHHHHHHHHHHhhCC--------------CcceeEeeeecc----C
Confidence 468999999987777766655 458999999 5689988877665542 345554443322 2
Q ss_pred cCCCccEEEEeccccCccC--HHHHHHHHHHhcCCCeEEEEEEEEcCh
Q 027530 142 VAPPFDYIIGTDVVYAEHL--LEPLLQTIFALSGPKTTILLGYEIRST 187 (222)
Q Consensus 142 ~~~~fD~Ii~~d~~y~~~~--~~~ll~~~~~~l~~~g~~~l~~~~r~~ 187 (222)
+....|+.+.--++...+. ....++.+..+ +.-.++++++.|+-
T Consensus 168 ~~~~~DlaLllK~lp~le~q~~g~g~~ll~~~--~~~~~vVSfPtrSL 213 (251)
T PF07091_consen 168 PKEPADLALLLKTLPCLERQRRGAGLELLDAL--RSPHVVVSFPTRSL 213 (251)
T ss_dssp TTSEESEEEEET-HHHHHHHSTTHHHHHHHHS--CESEEEEEEES---
T ss_pred CCCCcchhhHHHHHHHHHHHhcchHHHHHHHh--CCCeEEEecccccc
Confidence 3567999987644421111 01122222222 23466778887653
No 296
>KOG2912 consensus Predicted DNA methylase [Function unknown]
Probab=93.82 E-value=0.073 Score=44.70 Aligned_cols=77 Identities=17% Similarity=0.213 Sum_probs=48.9
Q ss_pred EEEeCCCccHHHHHHHH----hCCEEEEecchh-hHHHHHHHHHHhhccccccCCCCCCCCCceEEEEeecCCCc---cc
Q 027530 68 VIELGAGCGVAGFGMAL----LGCNVITTDQIE-VLPLLKRNVEWNTSRISQMNPGSGNLLGSIQAVELDWGNED---HI 139 (222)
Q Consensus 68 vLelGcG~G~~~i~la~----~g~~v~~~D~~~-~l~~~~~n~~~n~~~~~~~~~~~~~~~~~v~~~~~d~~~~~---~~ 139 (222)
=+|||.|+ ..|..+. .+....+||+.+ .++.+++|+.+|++. +.+.+++..-.+.. ..
T Consensus 106 GiDIgtga--sci~~llg~rq~n~~f~~teidd~s~~~a~snV~qn~ls------------s~ikvV~~~~~ktll~d~~ 171 (419)
T KOG2912|consen 106 GIDIGTGA--SCIYPLLGARQNNWYFLATEIDDMSFNYAKSNVEQNNLS------------SLIKVVKVEPQKTLLMDAL 171 (419)
T ss_pred eeeccCch--hhhHHhhhchhccceeeeeeccccccchhhccccccccc------------cceeeEEecchhhcchhhh
Confidence 36887664 4444332 244688999966 899999999999864 45555543221110 00
Q ss_pred -cccCCCccEEEEeccccCc
Q 027530 140 -KAVAPPFDYIIGTDVVYAE 158 (222)
Q Consensus 140 -~~~~~~fD~Ii~~d~~y~~ 158 (222)
...+..||++++++++|..
T Consensus 172 ~~~~e~~ydFcMcNPPFfe~ 191 (419)
T KOG2912|consen 172 KEESEIIYDFCMCNPPFFEN 191 (419)
T ss_pred ccCccceeeEEecCCchhhc
Confidence 1124469999999999864
No 297
>KOG1253 consensus tRNA methyltransferase [Translation, ribosomal structure and biogenesis]
Probab=93.61 E-value=0.068 Score=47.33 Aligned_cols=104 Identities=22% Similarity=0.181 Sum_probs=72.9
Q ss_pred CCCCeEEEeCCCccHHHHHHHHh--CC-EEEEecc-hhhHHHHHHHHHHhhccccccCCCCCCCCCceEEEEeecCCCc-
Q 027530 63 LKGKRVIELGAGCGVAGFGMALL--GC-NVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSGNLLGSIQAVELDWGNED- 137 (222)
Q Consensus 63 ~~~~~vLelGcG~G~~~i~la~~--g~-~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~v~~~~~d~~~~~- 137 (222)
.++.+|||-=|++|+=+|-.|+. |. +|++-|. +.+++..++|++.|+.. +.+.....|.....
T Consensus 108 ~~~l~vLealsAtGlrslRya~El~~v~~v~AnD~~~~aV~~i~~Nv~~N~v~------------~ive~~~~DA~~lM~ 175 (525)
T KOG1253|consen 108 EKSLRVLEALSATGLRSLRYAKELPGVRQVVANDLNENAVTSIQRNVELNGVE------------DIVEPHHSDANVLMY 175 (525)
T ss_pred cCcchHHHHhhhhhHHHHHHHHHhcchhhhcccCCCHHHHHHHHhhhhhcCch------------hhcccccchHHHHHH
Confidence 35568999999999999988875 33 5999998 56999999999999753 23444433322111
Q ss_pred cccccCCCccEEEEeccccCccCHHHHHHHHHHhcCCCeEEEEEE
Q 027530 138 HIKAVAPPFDYIIGTDVVYAEHLLEPLLQTIFALSGPKTTILLGY 182 (222)
Q Consensus 138 ~~~~~~~~fD~Ii~~d~~y~~~~~~~ll~~~~~~l~~~g~~~l~~ 182 (222)
........||+|=. |++ .....+++...+.++.||.++++.
T Consensus 176 ~~~~~~~~FDvIDL-DPy---Gs~s~FLDsAvqav~~gGLL~vT~ 216 (525)
T KOG1253|consen 176 EHPMVAKFFDVIDL-DPY---GSPSPFLDSAVQAVRDGGLLCVTC 216 (525)
T ss_pred hccccccccceEec-CCC---CCccHHHHHHHHHhhcCCEEEEEe
Confidence 11122478998853 343 234568999999999999998865
No 298
>PF04989 CmcI: Cephalosporin hydroxylase; InterPro: IPR007072 This entry contains Rhamnosyl O-methyltransferase which catalyses the O-methylation of the hydroxyl group located on C-2 of the first rhamnosyl residue linked to the phenolic group of glycosylated phenolphthiocerol dimycocerosates (PGL) and p-hydroxybenzoic acid derivatives (p-HBAD) []. Members of this family are about 220 amino acids long. It also includes the CmcI protein O85726 from SWISSPROT, which is presumed to represent the cephalosporin-7--hydroxylase []. However this has not been experimentally verified.; GO: 0008168 methyltransferase activity, 0008610 lipid biosynthetic process; PDB: 2BR4_B 2BR3_E 2BR5_E 2BM8_J 2BM9_E.
Probab=93.48 E-value=0.99 Score=35.76 Aligned_cols=105 Identities=18% Similarity=0.130 Sum_probs=52.6
Q ss_pred CCCeEEEeCCCccHHHHHHHH----h--CCEEEEecch-hhHHHHHHHHHHhhccccccCCCCCCCCCceEEEEeecCCC
Q 027530 64 KGKRVIELGAGCGVAGFGMAL----L--GCNVITTDQI-EVLPLLKRNVEWNTSRISQMNPGSGNLLGSIQAVELDWGNE 136 (222)
Q Consensus 64 ~~~~vLelGcG~G~~~i~la~----~--g~~v~~~D~~-~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~v~~~~~d~~~~ 136 (222)
+-+.|+|+|.=.|--.+..|. . .++|+++|++ ..... +.++.. ....+|++.+++..+.
T Consensus 32 kPd~IIE~Gi~~GGSli~~A~ml~~~~~~~~VigiDIdir~~~~--~a~e~h------------p~~~rI~~i~Gds~d~ 97 (206)
T PF04989_consen 32 KPDLIIETGIAHGGSLIFWASMLELLGGKGKVIGIDIDIRPHNR--KAIESH------------PMSPRITFIQGDSIDP 97 (206)
T ss_dssp --SEEEEE--TTSHHHHHHHHHHHHTT---EEEEEES-GTT--S---GGGG----------------TTEEEEES-SSST
T ss_pred CCCeEEEEecCCCchHHHHHHHHHHhCCCceEEEEeCCcchhch--HHHhhc------------cccCceEEEECCCCCH
Confidence 446999999998866665553 2 2479999983 22111 111111 1236899999887665
Q ss_pred ccccc---cCCCcc-EEEEeccccCccCHHHHHHHHHHhcCCCeEEEEEE
Q 027530 137 DHIKA---VAPPFD-YIIGTDVVYAEHLLEPLLQTIFALSGPKTTILLGY 182 (222)
Q Consensus 137 ~~~~~---~~~~fD-~Ii~~d~~y~~~~~~~ll~~~~~~l~~~g~~~l~~ 182 (222)
+.... ....++ ++|.-|.-+..+....-++....++++|+.+++.+
T Consensus 98 ~~~~~v~~~~~~~~~vlVilDs~H~~~hvl~eL~~y~plv~~G~Y~IVeD 147 (206)
T PF04989_consen 98 EIVDQVRELASPPHPVLVILDSSHTHEHVLAELEAYAPLVSPGSYLIVED 147 (206)
T ss_dssp HHHHTSGSS----SSEEEEESS----SSHHHHHHHHHHT--TT-EEEETS
T ss_pred HHHHHHHHhhccCCceEEEECCCccHHHHHHHHHHhCccCCCCCEEEEEe
Confidence 43221 111233 23445666666677777888899999999988743
No 299
>KOG4058 consensus Uncharacterized conserved protein [Function unknown]
Probab=93.41 E-value=0.74 Score=34.54 Aligned_cols=96 Identities=14% Similarity=0.089 Sum_probs=60.4
Q ss_pred CeEEEeCCCccHHHHHHHHhCC-EEEEecc-hhhHHHHHHHHHHhhccccccCCCCCCCCCceEEEEeecCCCccccccC
Q 027530 66 KRVIELGAGCGVAGFGMALLGC-NVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSGNLLGSIQAVELDWGNEDHIKAVA 143 (222)
Q Consensus 66 ~~vLelGcG~G~~~i~la~~g~-~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~ 143 (222)
.+.+|||+|-|.+-+.+++.|. .-+++++ +-.+...+...-+.+.. ....+..-|.-..+ ..+
T Consensus 74 GklvDlGSGDGRiVlaaar~g~~~a~GvELNpwLVaysrl~a~R~g~~------------k~trf~RkdlwK~d---l~d 138 (199)
T KOG4058|consen 74 GKLVDLGSGDGRIVLAAARCGLRPAVGVELNPWLVAYSRLHAWRAGCA------------KSTRFRRKDLWKVD---LRD 138 (199)
T ss_pred CcEEeccCCCceeehhhhhhCCCcCCceeccHHHHHHHHHHHHHHhcc------------cchhhhhhhhhhcc---ccc
Confidence 4799999999999999999995 6899998 56888887776666542 23444432221111 113
Q ss_pred CCccEEEEeccccCccCHHHHHHHHHHhcCCCeEEEEE
Q 027530 144 PPFDYIIGTDVVYAEHLLEPLLQTIFALSGPKTTILLG 181 (222)
Q Consensus 144 ~~fD~Ii~~d~~y~~~~~~~ll~~~~~~l~~~g~~~l~ 181 (222)
-.+-+|+..+. ....+...+..-+..+..++-+
T Consensus 139 y~~vviFgaes-----~m~dLe~KL~~E~p~nt~vvac 171 (199)
T KOG4058|consen 139 YRNVVIFGAES-----VMPDLEDKLRTELPANTRVVAC 171 (199)
T ss_pred cceEEEeehHH-----HHhhhHHHHHhhCcCCCeEEEE
Confidence 34555665533 3455555565556666665443
No 300
>TIGR00027 mthyl_TIGR00027 methyltransferase, putative, TIGR00027 family. This model represents a set of probable methyltransferases, about 300 amino acids long, with essentially full length homology. Members share an N-terminal region described by Pfam model pfam02409. Included are a paralogous family of 12 proteins in Mycobacterium tuberculosis, plus close homologs in related species, a family of 8 in the archaeon Methanosarcina acetivorans, and small numbers of members in other species, including plants.
Probab=93.03 E-value=0.93 Score=37.31 Aligned_cols=108 Identities=20% Similarity=0.268 Sum_probs=67.1
Q ss_pred CeEEEeCCCccHHHHHHHHh-CCEEEEecchhhHHHHHHHHHHhhccccccCCCCCCCCCceEEEEeecCCC--cccc--
Q 027530 66 KRVIELGAGCGVAGFGMALL-GCNVITTDQIEVLPLLKRNVEWNTSRISQMNPGSGNLLGSIQAVELDWGNE--DHIK-- 140 (222)
Q Consensus 66 ~~vLelGcG~G~~~i~la~~-g~~v~~~D~~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~v~~~~~d~~~~--~~~~-- 140 (222)
..|+.||||.=.-+.-+... +..++=+|.+++++.=++-+..++.. ...+..++..|..+. ..+.
T Consensus 83 ~qvV~LGaGlDTr~~Rl~~~~~~~~~EvD~P~v~~~K~~~l~~~~~~----------~~~~~~~v~~Dl~~~w~~~L~~~ 152 (260)
T TIGR00027 83 RQVVILGAGLDTRAYRLPWPDGTRVFEVDQPAVLAFKEKVLAELGAE----------PPAHRRAVPVDLRQDWPAALAAA 152 (260)
T ss_pred cEEEEeCCccccHHHhcCCCCCCeEEECCChHHHHHHHHHHHHcCCC----------CCCceEEeccCchhhHHHHHHhC
Confidence 36999999975555544322 45677788888887766666655421 124556665554411 0111
Q ss_pred -ccCCCccEEEEeccccC--ccCHHHHHHHHHHhcCCCeEEEEEEE
Q 027530 141 -AVAPPFDYIIGTDVVYA--EHLLEPLLQTIFALSGPKTTILLGYE 183 (222)
Q Consensus 141 -~~~~~fD~Ii~~d~~y~--~~~~~~ll~~~~~~l~~~g~~~l~~~ 183 (222)
......-++++-.+++. .+....+++.+.+...||+.+++-+.
T Consensus 153 gfd~~~ptl~i~EGvl~YL~~~~v~~ll~~i~~~~~~gs~l~~d~~ 198 (260)
T TIGR00027 153 GFDPTAPTAWLWEGLLMYLTEEAVDALLAFIAELSAPGSRLAFDYV 198 (260)
T ss_pred CCCCCCCeeeeecchhhcCCHHHHHHHHHHHHHhCCCCcEEEEEec
Confidence 11234456777777755 34577899999998889888877654
No 301
>PF06859 Bin3: Bicoid-interacting protein 3 (Bin3); InterPro: IPR010675 This entry represents a conserved region of approximately 120 residues within eukaryotic Bicoid-interacting protein 3 (Bin3). Bin3, which shows similarity to a number of protein methyltransferases that modify RNA-binding proteins, interacts with Bicoid, which itself directs pattern formation in the early Drosophila embryo. The interaction might allow Bicoid to switch between its dual roles in transcription and translation []. Note that proteins of the entry contain a conserved HLN motif.; GO: 0008168 methyltransferase activity; PDB: 3G07_B.
Probab=92.91 E-value=0.05 Score=38.46 Aligned_cols=40 Identities=20% Similarity=0.283 Sum_probs=29.6
Q ss_pred CccEEEEeccccCc------cCHHHHHHHHHHhcCCCeEEEEEEEE
Q 027530 145 PFDYIIGTDVVYAE------HLLEPLLQTIFALSGPKTTILLGYEI 184 (222)
Q Consensus 145 ~fD~Ii~~d~~y~~------~~~~~ll~~~~~~l~~~g~~~l~~~~ 184 (222)
+||+|+|-.+.-+. +-+..+++.+...|+|||.+++-.++
T Consensus 1 ~yDvilclSVtkWIHLn~GD~Gl~~~f~~~~~~L~pGG~lilEpQ~ 46 (110)
T PF06859_consen 1 QYDVILCLSVTKWIHLNWGDEGLKRFFRRIYSLLRPGGILILEPQP 46 (110)
T ss_dssp -EEEEEEES-HHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEE---
T ss_pred CccEEEEEEeeEEEEecCcCHHHHHHHHHHHHhhCCCCEEEEeCCC
Confidence 48999998887553 34677999999999999999997653
No 302
>COG1748 LYS9 Saccharopine dehydrogenase and related proteins [Amino acid transport and metabolism]
Probab=92.72 E-value=1.2 Score=38.93 Aligned_cols=75 Identities=23% Similarity=0.383 Sum_probs=48.9
Q ss_pred CeEEEeCCCc-cHHH-HHHHHhC-CEEEEecc-hhhHHHHHHHHHHhhccccccCCCCCCCCCceEEEEeecCCCccccc
Q 027530 66 KRVIELGAGC-GVAG-FGMALLG-CNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSGNLLGSIQAVELDWGNEDHIKA 141 (222)
Q Consensus 66 ~~vLelGcG~-G~~~-i~la~~g-~~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~ 141 (222)
++||=||||. |... ..+|+.+ .+|+..|. .+.++.+..+.. .++++.++|..+...+..
T Consensus 2 ~~ilviGaG~Vg~~va~~la~~~d~~V~iAdRs~~~~~~i~~~~~-----------------~~v~~~~vD~~d~~al~~ 64 (389)
T COG1748 2 MKILVIGAGGVGSVVAHKLAQNGDGEVTIADRSKEKCARIAELIG-----------------GKVEALQVDAADVDALVA 64 (389)
T ss_pred CcEEEECCchhHHHHHHHHHhCCCceEEEEeCCHHHHHHHHhhcc-----------------ccceeEEecccChHHHHH
Confidence 5799999974 4433 2345556 68999997 454444433322 367888888887765544
Q ss_pred cCCCccEEEEeccccC
Q 027530 142 VAPPFDYIIGTDVVYA 157 (222)
Q Consensus 142 ~~~~fD~Ii~~d~~y~ 157 (222)
.-..+|+||.+-+.|.
T Consensus 65 li~~~d~VIn~~p~~~ 80 (389)
T COG1748 65 LIKDFDLVINAAPPFV 80 (389)
T ss_pred HHhcCCEEEEeCCchh
Confidence 4566799998766543
No 303
>TIGR00675 dcm DNA-methyltransferase (dcm). All proteins in this family for which functions are known are DNA-cytosine methyltransferases. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=92.59 E-value=0.17 Score=42.89 Aligned_cols=39 Identities=23% Similarity=0.273 Sum_probs=32.3
Q ss_pred EEEeCCCccHHHHHHHHhCCE-EEEecc-hhhHHHHHHHHH
Q 027530 68 VIELGAGCGVAGFGMALLGCN-VITTDQ-IEVLPLLKRNVE 106 (222)
Q Consensus 68 vLelGcG~G~~~i~la~~g~~-v~~~D~-~~~l~~~~~n~~ 106 (222)
|+||.||.|-.++.+.+.|.+ +.++|. +.+.+..+.|..
T Consensus 1 vidLF~G~GG~~~Gl~~aG~~~~~a~e~~~~a~~ty~~N~~ 41 (315)
T TIGR00675 1 FIDLFAGIGGIRLGFEQAGFKCVFASEIDKYAQKTYEANFG 41 (315)
T ss_pred CEEEecCccHHHHHHHHcCCeEEEEEeCCHHHHHHHHHhCC
Confidence 689999999999999999998 557998 458887777754
No 304
>TIGR02822 adh_fam_2 zinc-binding alcohol dehydrogenase family protein. Members of this model form a distinct subset of the larger family of oxidoreductases that includes zinc-binding alcohol dehydrogenases and NADPH:quinone reductases (pfam00107). The gene neighborhood of members of this family is not conserved and it appears that no members are characterized. The sequence of the family includes 6 invariant cysteine residues and one invariant histidine. It appears that no member is characterized.
Probab=92.22 E-value=2.8 Score=35.41 Aligned_cols=89 Identities=16% Similarity=0.025 Sum_probs=51.6
Q ss_pred CCCCCeEEEeCCCc-cHHHHHHHH-hCCEEEEecc-hhhHHHHHHHHHHhhccccccCCCCCCCCCceEEEEeecCCCcc
Q 027530 62 KLKGKRVIELGAGC-GVAGFGMAL-LGCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSGNLLGSIQAVELDWGNEDH 138 (222)
Q Consensus 62 ~~~~~~vLelGcG~-G~~~i~la~-~g~~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~ 138 (222)
..+|.+||=.|+|. |...+.+|+ .|++|++++. ++-++.+++ .+.. .+.. -.+.
T Consensus 163 ~~~g~~VlV~G~g~iG~~a~~~a~~~G~~vi~~~~~~~~~~~a~~----~Ga~---------------~vi~--~~~~-- 219 (329)
T TIGR02822 163 LPPGGRLGLYGFGGSAHLTAQVALAQGATVHVMTRGAAARRLALA----LGAA---------------SAGG--AYDT-- 219 (329)
T ss_pred CCCCCEEEEEcCCHHHHHHHHHHHHCCCeEEEEeCChHHHHHHHH----hCCc---------------eecc--cccc--
Confidence 44688999999864 555555554 4788999886 444444433 2211 0110 0000
Q ss_pred ccccCCCccEEEEeccccCccCHHHHHHHHHHhcCCCeEEEEEE
Q 027530 139 IKAVAPPFDYIIGTDVVYAEHLLEPLLQTIFALSGPKTTILLGY 182 (222)
Q Consensus 139 ~~~~~~~fD~Ii~~d~~y~~~~~~~ll~~~~~~l~~~g~~~l~~ 182 (222)
..+.+|+++-.+.. ...+....+.++++|++.+..
T Consensus 220 ---~~~~~d~~i~~~~~------~~~~~~~~~~l~~~G~~v~~G 254 (329)
T TIGR02822 220 ---PPEPLDAAILFAPA------GGLVPPALEALDRGGVLAVAG 254 (329)
T ss_pred ---CcccceEEEECCCc------HHHHHHHHHhhCCCcEEEEEe
Confidence 12357877654443 245667778899999987654
No 305
>KOG3924 consensus Putative protein methyltransferase involved in meiosis and transcriptional silencing (Dot1) [Cell cycle control, cell division, chromosome partitioning; Transcription]
Probab=92.21 E-value=0.6 Score=40.43 Aligned_cols=113 Identities=12% Similarity=0.084 Sum_probs=66.1
Q ss_pred CCCCCeEEEeCCCccHHHHHHHHh-CC-EEEEecc----hh-hHHHHHHHHHHhhccccccCCCCCCCCCceEEEEeecC
Q 027530 62 KLKGKRVIELGAGCGVAGFGMALL-GC-NVITTDQ----IE-VLPLLKRNVEWNTSRISQMNPGSGNLLGSIQAVELDWG 134 (222)
Q Consensus 62 ~~~~~~vLelGcG~G~~~i~la~~-g~-~v~~~D~----~~-~l~~~~~n~~~n~~~~~~~~~~~~~~~~~v~~~~~d~~ 134 (222)
..++....|||+|.|-+...+|.. +. +=+|+++ ++ +..+...+...-.... .....+..++++..
T Consensus 190 ~g~~D~F~DLGSGVGqlv~~~aa~a~~k~svG~eim~~pS~~a~~~~~~~kk~~k~fG--------k~~~~~~~i~gsf~ 261 (419)
T KOG3924|consen 190 LGPADVFMDLGSGVGQLVCFVAAYAGCKKSVGFEIMDKPSQCAELNKEEFKKLMKHFG--------KKPNKIETIHGSFL 261 (419)
T ss_pred cCCCCcccCCCcccchhhHHHHHhhccccccceeeecCcHHHHHHHHHHHHHHHHHhC--------CCcCceeecccccC
Confidence 345678999999998777666654 33 3444443 22 2222222322211110 11234566665555
Q ss_pred CCccccccCCCccEEEEeccccCccCHHHHHHHHHHhcCCCeEEEEEEE
Q 027530 135 NEDHIKAVAPPFDYIIGTDVVYAEHLLEPLLQTIFALSGPKTTILLGYE 183 (222)
Q Consensus 135 ~~~~~~~~~~~fD~Ii~~d~~y~~~~~~~ll~~~~~~l~~~g~~~l~~~ 183 (222)
+...........++|+.+.+.+.++....+- .+..-+++|.+++=.-+
T Consensus 262 ~~~~v~eI~~eatvi~vNN~~Fdp~L~lr~~-eil~~ck~gtrIiS~~~ 309 (419)
T KOG3924|consen 262 DPKRVTEIQTEATVIFVNNVAFDPELKLRSK-EILQKCKDGTRIISSKP 309 (419)
T ss_pred CHHHHHHHhhcceEEEEecccCCHHHHHhhH-HHHhhCCCcceEecccc
Confidence 4433334456899999999998877665555 66666788888765443
No 306
>PF02737 3HCDH_N: 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain; InterPro: IPR006176 3-hydroxyacyl-CoA dehydrogenase (1.1.1.35 from EC) (HCDH) [] is an enzyme involved in fatty acid metabolism, it catalyzes the reduction of 3-hydroxyacyl-CoA to 3-oxoacyl-CoA. Most eukaryotic cells have 2 fatty-acid beta-oxidation systems, one located in mitochondria and the other in peroxisomes. In peroxisomes 3-hydroxyacyl-CoA dehydrogenase forms, with enoyl-CoA hydratase (ECH) and 3,2-trans-enoyl-CoA isomerase (ECI) a multifunctional enzyme where the N-terminal domain bears the hydratase/isomerase activities and the C-terminal domain the dehydrogenase activity. There are two mitochondrial enzymes: one which is monofunctional and the other which is, like its peroxisomal counterpart, multifunctional. In Escherichia coli (gene fadB) and Pseudomonas fragi (gene faoA) HCDH is part of a multifunctional enzyme which also contains an ECH/ECI domain as well as a 3-hydroxybutyryl-CoA epimerase domain []. There are two major regions of similarity in the sequences of proteins of the HCDH family, the first one located in the N-terminal, corresponds to the NAD-binding site, the second one is located in the centre of the sequence. This represents the C-terminal domain which is also found in lambda crystallin. Some proteins include two copies of this domain.; GO: 0003857 3-hydroxyacyl-CoA dehydrogenase activity, 0016491 oxidoreductase activity, 0006631 fatty acid metabolic process, 0055114 oxidation-reduction process; PDB: 3K6J_A 1ZCJ_A 2X58_A 1ZEJ_A 3HDH_B 2WTB_A 1WDL_B 2D3T_B 1WDK_A 1WDM_B ....
Probab=92.21 E-value=1 Score=34.86 Aligned_cols=102 Identities=22% Similarity=0.232 Sum_probs=52.9
Q ss_pred EEEeCCCc-c-HHHHHHHHhCCEEEEecc-hhhHHHHHHHHHHhhccccccCCCC----CCCCCceEEEEeecCCCcccc
Q 027530 68 VIELGAGC-G-VAGFGMALLGCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGS----GNLLGSIQAVELDWGNEDHIK 140 (222)
Q Consensus 68 vLelGcG~-G-~~~i~la~~g~~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~----~~~~~~v~~~~~d~~~~~~~~ 140 (222)
|-=+|+|+ | -++..++..|.+|+..|. ++.++.+++.++.+..........+ .....++++.. + ..
T Consensus 2 V~ViGaG~mG~~iA~~~a~~G~~V~l~d~~~~~l~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~i~~~~----d---l~ 74 (180)
T PF02737_consen 2 VAVIGAGTMGRGIAALFARAGYEVTLYDRSPEALERARKRIERLLDRLVRKGRLSQEEADAALARISFTT----D---LE 74 (180)
T ss_dssp EEEES-SHHHHHHHHHHHHTTSEEEEE-SSHHHHHHHHHHHHHHHHHHHHTTTTTHHHHHHHHHTEEEES----S---GG
T ss_pred EEEEcCCHHHHHHHHHHHhCCCcEEEEECChHHHHhhhhHHHHHHhhhhhhccchhhhhhhhhhhccccc----C---HH
Confidence 55588886 5 356667778999999998 6688777776665321110000000 00112444331 1 12
Q ss_pred ccCCCccEEEEeccccCccCHHHHHHHHHHhcCCCeEE
Q 027530 141 AVAPPFDYIIGTDVVYAEHLLEPLLQTIFALSGPKTTI 178 (222)
Q Consensus 141 ~~~~~fD~Ii~~d~~y~~~~~~~ll~~~~~~l~~~g~~ 178 (222)
... ..|+||=+- .-..+.-..+++.+.+++.|+..+
T Consensus 75 ~~~-~adlViEai-~E~l~~K~~~~~~l~~~~~~~~il 110 (180)
T PF02737_consen 75 EAV-DADLVIEAI-PEDLELKQELFAELDEICPPDTIL 110 (180)
T ss_dssp GGC-TESEEEE-S--SSHHHHHHHHHHHHCCS-TTSEE
T ss_pred HHh-hhheehhhc-cccHHHHHHHHHHHHHHhCCCceE
Confidence 223 678887441 222334456888888888777653
No 307
>cd08230 glucose_DH Glucose dehydrogenase. Glucose dehydrogenase (GlcDH), a member of the medium chain dehydrogenase/zinc-dependent alcohol dehydrogenase-like family, catalyzes the NADP(+)-dependent oxidation of glucose to gluconate, the first step in the Entner-Doudoroff pathway, an alternative to or substitute for glycolysis or the pentose phosphate pathway. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossman fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contai
Probab=92.19 E-value=1.2 Score=38.01 Aligned_cols=93 Identities=17% Similarity=0.213 Sum_probs=51.5
Q ss_pred CCCCeEEEeCCCc-cHHHHHHHH-hCCEEEEecch----hhHHHHHHHHHHhhccccccCCCCCCCCCceEEEEeecCCC
Q 027530 63 LKGKRVIELGAGC-GVAGFGMAL-LGCNVITTDQI----EVLPLLKRNVEWNTSRISQMNPGSGNLLGSIQAVELDWGNE 136 (222)
Q Consensus 63 ~~~~~vLelGcG~-G~~~i~la~-~g~~v~~~D~~----~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~v~~~~~d~~~~ 136 (222)
.+|.+||=+|+|. |..++.+|+ .|++|++++.. +-++.++ ..+.. .+....-++.+
T Consensus 171 ~~g~~vlI~G~G~vG~~a~q~ak~~G~~vi~~~~~~~~~~~~~~~~----~~Ga~-------------~v~~~~~~~~~- 232 (355)
T cd08230 171 WNPRRALVLGAGPIGLLAALLLRLRGFEVYVLNRRDPPDPKADIVE----ELGAT-------------YVNSSKTPVAE- 232 (355)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHcCCeEEEEecCCCCHHHHHHHH----HcCCE-------------EecCCccchhh-
Confidence 4678999999875 766666665 47799998852 2333332 22211 01100101111
Q ss_pred ccccccCCCccEEEEeccccCccCHHHHHHHHHHhcCCCeEEEEEE
Q 027530 137 DHIKAVAPPFDYIIGTDVVYAEHLLEPLLQTIFALSGPKTTILLGY 182 (222)
Q Consensus 137 ~~~~~~~~~fD~Ii~~d~~y~~~~~~~ll~~~~~~l~~~g~~~l~~ 182 (222)
. .....+|+|+-+ .- ....+....+.++++|++++..
T Consensus 233 --~-~~~~~~d~vid~--~g----~~~~~~~~~~~l~~~G~~v~~G 269 (355)
T cd08230 233 --V-KLVGEFDLIIEA--TG----VPPLAFEALPALAPNGVVILFG 269 (355)
T ss_pred --h-hhcCCCCEEEEC--cC----CHHHHHHHHHHccCCcEEEEEe
Confidence 0 113468988843 21 1236677778899999887654
No 308
>PRK05786 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=92.14 E-value=3 Score=33.03 Aligned_cols=78 Identities=26% Similarity=0.344 Sum_probs=44.6
Q ss_pred CCCCeEEEeCCCccHHHHHH----HHhCCEEEEecc-hhhHHHHHHHHHHhhccccccCCCCCCCCCceEEEEeecCCCc
Q 027530 63 LKGKRVIELGAGCGVAGFGM----ALLGCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSGNLLGSIQAVELDWGNED 137 (222)
Q Consensus 63 ~~~~~vLelGcG~G~~~i~l----a~~g~~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~v~~~~~d~~~~~ 137 (222)
.++++||=.|++.|+ |..+ ++.|++|++++. ++..+.+.+.+... .++.+...|+.+.+
T Consensus 3 ~~~~~vlItGa~g~i-G~~~a~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~---------------~~~~~~~~Dl~~~~ 66 (238)
T PRK05786 3 LKGKKVAIIGVSEGL-GYAVAYFALKEGAQVCINSRNENKLKRMKKTLSKY---------------GNIHYVVGDVSSTE 66 (238)
T ss_pred cCCcEEEEECCCchH-HHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhc---------------CCeEEEECCCCCHH
Confidence 357899999997544 3333 345889999997 44443332322211 24566777777654
Q ss_pred ccc-------ccCCCccEEEEecccc
Q 027530 138 HIK-------AVAPPFDYIIGTDVVY 156 (222)
Q Consensus 138 ~~~-------~~~~~fD~Ii~~d~~y 156 (222)
... ..-+..|.++.+-..+
T Consensus 67 ~~~~~~~~~~~~~~~id~ii~~ag~~ 92 (238)
T PRK05786 67 SARNVIEKAAKVLNAIDGLVVTVGGY 92 (238)
T ss_pred HHHHHHHHHHHHhCCCCEEEEcCCCc
Confidence 321 0123578877665433
No 309
>KOG1201 consensus Hydroxysteroid 17-beta dehydrogenase 11 [Secondary metabolites biosynthesis, transport and catabolism]
Probab=92.12 E-value=0.73 Score=38.47 Aligned_cols=78 Identities=17% Similarity=0.228 Sum_probs=56.2
Q ss_pred CCCCCCeEEEeCCCccH---HHHHHHHhCCEEEEecc-hhhHHHHHHHHHHhhccccccCCCCCCCCCceEEEEeecCCC
Q 027530 61 SKLKGKRVIELGAGCGV---AGFGMALLGCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSGNLLGSIQAVELDWGNE 136 (222)
Q Consensus 61 ~~~~~~~vLelGcG~G~---~~i~la~~g~~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~v~~~~~d~~~~ 136 (222)
-++.|+.||==|.|.|+ .++.+|++|++++..|+ .+..+...+.++.+| ++.....|..+.
T Consensus 34 k~v~g~~vLITGgg~GlGr~ialefa~rg~~~vl~Din~~~~~etv~~~~~~g---------------~~~~y~cdis~~ 98 (300)
T KOG1201|consen 34 KSVSGEIVLITGGGSGLGRLIALEFAKRGAKLVLWDINKQGNEETVKEIRKIG---------------EAKAYTCDISDR 98 (300)
T ss_pred hhccCCEEEEeCCCchHHHHHHHHHHHhCCeEEEEeccccchHHHHHHHHhcC---------------ceeEEEecCCCH
Confidence 46789999999999985 66778889999999998 555555555555444 456677777766
Q ss_pred ccc-------cccCCCccEEEEec
Q 027530 137 DHI-------KAVAPPFDYIIGTD 153 (222)
Q Consensus 137 ~~~-------~~~~~~fD~Ii~~d 153 (222)
++. ...-+..|++|-|-
T Consensus 99 eei~~~a~~Vk~e~G~V~ILVNNA 122 (300)
T KOG1201|consen 99 EEIYRLAKKVKKEVGDVDILVNNA 122 (300)
T ss_pred HHHHHHHHHHHHhcCCceEEEecc
Confidence 543 12346889988763
No 310
>PF11599 AviRa: RRNA methyltransferase AviRa; InterPro: IPR024268 This family of proteins includes the methyltransferase AviRa from Streptomyces viridochromogenes. This protein mediates the resistance to the antibiotic avilamycin. AviRa methylates a specific guanine base within the peptidyl-transferase loop of the 23S ribosomal RNA [].; PDB: 1O9H_A 1O9G_A.
Probab=92.03 E-value=0.33 Score=38.69 Aligned_cols=119 Identities=16% Similarity=0.160 Sum_probs=61.3
Q ss_pred CeEEEeCCCccHHHHHHHHhC----CEEEEecc-hhhHHHHHHHHHHhhc---ccc-----c-----cCCCC--------
Q 027530 66 KRVIELGAGCGVAGFGMALLG----CNVITTDQ-IEVLPLLKRNVEWNTS---RIS-----Q-----MNPGS-------- 119 (222)
Q Consensus 66 ~~vLelGcG~G~~~i~la~~g----~~v~~~D~-~~~l~~~~~n~~~n~~---~~~-----~-----~~~~~-------- 119 (222)
-++.|=+||.|.+--.+..+. ..|.+.|+ +++++.|++|+.+-.. .-+ . ..|+-
T Consensus 53 ~tLyDPCCG~gyLLTVlGLLh~~~l~~v~aSDId~~aL~lA~kNL~LLt~eGL~~R~~eL~~~~e~~~kps~~eAl~sA~ 132 (246)
T PF11599_consen 53 YTLYDPCCGSGYLLTVLGLLHRRRLRRVYASDIDEDALELARKNLSLLTPEGLEARREELRELYEQYGKPSHAEALESAD 132 (246)
T ss_dssp EEEEETT-TTSHHHHHHHHHTGGGEEEEEEEES-HHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHHH--HHHHHHHHHHH
T ss_pred eeeeccCCCccHHHHHHHHhhhHHHHhHhcccCCHHHHHHHHHhhhhccHhHHHHHHHHHHHHHHHcCCchHHHHHHHHH
Confidence 479999999997655554432 25999999 5699999999875321 100 0 00000
Q ss_pred --------CCCCCceEEEEeecCCCcccc--ccCCCccEEEEeccccCc-----c-----CHHHHHHHHHHhcCCCeEEE
Q 027530 120 --------GNLLGSIQAVELDWGNEDHIK--AVAPPFDYIIGTDVVYAE-----H-----LLEPLLQTIFALSGPKTTIL 179 (222)
Q Consensus 120 --------~~~~~~v~~~~~d~~~~~~~~--~~~~~fD~Ii~~d~~y~~-----~-----~~~~ll~~~~~~l~~~g~~~ 179 (222)
........+...|..+..... ......|+||. |+-|-. . -...++..+..+|.+++++.
T Consensus 133 RL~~~l~~~g~~~p~~~~~aDvf~~~~~~~~~~~~~~diViT-DlPYG~~t~W~g~~~~~p~~~ml~~l~~vLp~~sVV~ 211 (246)
T PF11599_consen 133 RLRERLAAEGGDEPHAIFRADVFDPSPLAVLDAGFTPDIVIT-DLPYGEMTSWQGEGSGGPVAQMLNSLAPVLPERSVVA 211 (246)
T ss_dssp HHHHHHHHTTSS--EEEEE--TT-HHHHHHHHTT---SEEEE-E--CCCSSSTTS---HHHHHHHHHHHHCCS-TT-EEE
T ss_pred HHHHHHHhcCCCCchhheeecccCCchhhhhccCCCCCEEEe-cCCCcccccccCCCCCCcHHHHHHHHHhhCCCCcEEE
Confidence 001223455554444432211 22344688875 565642 1 25668999999996666666
Q ss_pred EEEEEc
Q 027530 180 LGYEIR 185 (222)
Q Consensus 180 l~~~~r 185 (222)
++...|
T Consensus 212 v~~k~~ 217 (246)
T PF11599_consen 212 VSDKGR 217 (246)
T ss_dssp EEESSS
T ss_pred EecCCc
Confidence 644433
No 311
>PRK07066 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=92.02 E-value=1.1 Score=38.17 Aligned_cols=103 Identities=20% Similarity=0.194 Sum_probs=53.7
Q ss_pred CeEEEeCCCc-cH-HHHHHHHhCCEEEEecc-hhhHHHHHHHHHHhhccccccCCCCCCCCCceEEEEeecCCCcccccc
Q 027530 66 KRVIELGAGC-GV-AGFGMALLGCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSGNLLGSIQAVELDWGNEDHIKAV 142 (222)
Q Consensus 66 ~~vLelGcG~-G~-~~i~la~~g~~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~ 142 (222)
++|-=||+|+ |. .+..++..|.+|++.|. ++.++.++..+...................++++.. .....
T Consensus 8 ~~VaVIGaG~MG~giA~~~a~aG~~V~l~D~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~~~~-------~l~~a 80 (321)
T PRK07066 8 KTFAAIGSGVIGSGWVARALAHGLDVVAWDPAPGAEAALRANVANAWPALERQGLAPGASPARLRFVA-------TIEAC 80 (321)
T ss_pred CEEEEECcCHHHHHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCChhhHHhhceecC-------CHHHH
Confidence 5688889986 43 45556677999999998 667666655544322111000000000111222221 11111
Q ss_pred CCCccEEEEeccccCccCHHHHHHHHHHhcCCCe
Q 027530 143 APPFDYIIGTDVVYAEHLLEPLLQTIFALSGPKT 176 (222)
Q Consensus 143 ~~~fD~Ii~~d~~y~~~~~~~ll~~~~~~l~~~g 176 (222)
-...|+|+-+ +....+.-..+++.+.+.++|+.
T Consensus 81 v~~aDlViEa-vpE~l~vK~~lf~~l~~~~~~~a 113 (321)
T PRK07066 81 VADADFIQES-APEREALKLELHERISRAAKPDA 113 (321)
T ss_pred hcCCCEEEEC-CcCCHHHHHHHHHHHHHhCCCCe
Confidence 2457777755 33333344557777777777765
No 312
>cd08283 FDH_like_1 Glutathione-dependent formaldehyde dehydrogenase related proteins, child 1. Members identified as glutathione-dependent formaldehyde dehydrogenase(FDH), a member of the zinc-dependent/medium chain alcohol dehydrogenase family. FDH converts formaldehyde and NAD(P) to formate and NAD(P)H. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. MDH family uses NAD(H) as a cofactor in the interconversion of alcohols and aldehydes, or ketones. Like many zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), these FDHs form dimers, with 4 zinc ions per dimer. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. T
Probab=91.84 E-value=0.84 Score=39.54 Aligned_cols=42 Identities=31% Similarity=0.374 Sum_probs=31.2
Q ss_pred CCCCCeEEEeCCCc-cHHHHHHHHh-CC-EEEEecc-hhhHHHHHH
Q 027530 62 KLKGKRVIELGAGC-GVAGFGMALL-GC-NVITTDQ-IEVLPLLKR 103 (222)
Q Consensus 62 ~~~~~~vLelGcG~-G~~~i~la~~-g~-~v~~~D~-~~~l~~~~~ 103 (222)
..+|.+||.+|||. |...+.+|+. |. +|+++|. ++.++.+++
T Consensus 182 ~~~g~~VlV~g~G~vG~~~~~la~~~g~~~vi~~~~~~~~~~~~~~ 227 (386)
T cd08283 182 VKPGDTVAVWGCGPVGLFAARSAKLLGAERVIAIDRVPERLEMARS 227 (386)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCHHHHHHHHH
Confidence 44678999999987 7777777754 65 5999987 556666665
No 313
>PRK11524 putative methyltransferase; Provisional
Probab=91.80 E-value=0.28 Score=40.87 Aligned_cols=43 Identities=9% Similarity=0.044 Sum_probs=32.3
Q ss_pred cCCCccEEEEeccccCc----------------cCHHHHHHHHHHhcCCCeEEEEEEEE
Q 027530 142 VAPPFDYIIGTDVVYAE----------------HLLEPLLQTIFALSGPKTTILLGYEI 184 (222)
Q Consensus 142 ~~~~fD~Ii~~d~~y~~----------------~~~~~ll~~~~~~l~~~g~~~l~~~~ 184 (222)
.+++||+|+++++++.. ..+..++..+.++|+|+|.+++....
T Consensus 24 ~~~siDlIitDPPY~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~rvLK~~G~i~i~~~~ 82 (284)
T PRK11524 24 PSESVDLIFADPPYNIGKNFDGLIEAWKEDLFIDWLYEWIDECHRVLKKQGTMYIMNST 82 (284)
T ss_pred ccCcccEEEECCCcccccccccccccccHHHHHHHHHHHHHHHHHHhCCCcEEEEEcCc
Confidence 35789999999887521 11246888999999999999986544
No 314
>PF03269 DUF268: Caenorhabditis protein of unknown function, DUF268; InterPro: IPR004951 This family consists of proteins of unknown function found in Caenorhabditis species.
Probab=91.62 E-value=0.17 Score=38.34 Aligned_cols=100 Identities=13% Similarity=0.153 Sum_probs=58.5
Q ss_pred CCeEEEeCCCccHHHHHHHHhCC-EEEEecchh-hH-HHHHHHHHHhhccccccCCCCCCCCCceEEEEeecCCCccccc
Q 027530 65 GKRVIELGAGCGVAGFGMALLGC-NVITTDQIE-VL-PLLKRNVEWNTSRISQMNPGSGNLLGSIQAVELDWGNEDHIKA 141 (222)
Q Consensus 65 ~~~vLelGcG~G~~~i~la~~g~-~v~~~D~~~-~l-~~~~~n~~~n~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~ 141 (222)
|++++=+|+..-.+=..+.+.|+ +|..+++.. -+ +..+..+.. ...+.+. -+|. .
T Consensus 2 ~~~g~V~GS~~PwvEv~aL~~GA~~iltveyn~L~i~~~~~dr~ss---------------i~p~df~-~~~~------~ 59 (177)
T PF03269_consen 2 GKSGLVVGSMQPWVEVMALQHGAAKILTVEYNKLEIQEEFRDRLSS---------------ILPVDFA-KNWQ------K 59 (177)
T ss_pred CceEEEEecCCchhhHHHHHcCCceEEEEeecccccCccccccccc---------------ccHHHHH-HHHH------H
Confidence 57889999998777777778887 488887633 11 111111000 0000000 0121 1
Q ss_pred cCCCccEEEEeccccCcc-----------CHHHHHHHHHHhcCCCeEEEEEEEEcC
Q 027530 142 VAPPFDYIIGTDVVYAEH-----------LLEPLLQTIFALSGPKTTILLGYEIRS 186 (222)
Q Consensus 142 ~~~~fD~Ii~~d~~y~~~-----------~~~~ll~~~~~~l~~~g~~~l~~~~r~ 186 (222)
..++||++.+...+.+.. --..-+..++++|||||.++++.+...
T Consensus 60 y~~~fD~~as~~siEh~GLGRYGDPidp~Gdl~~m~~i~~vLK~GG~L~l~vPvG~ 115 (177)
T PF03269_consen 60 YAGSFDFAASFSSIEHFGLGRYGDPIDPIGDLRAMAKIKCVLKPGGLLFLGVPVGT 115 (177)
T ss_pred hhccchhhheechhccccccccCCCCCccccHHHHHHHHHhhccCCeEEEEeecCC
Confidence 246799888877774421 123467778889999999999887543
No 315
>PF03686 UPF0146: Uncharacterised protein family (UPF0146); InterPro: IPR005353 The function of this family of proteins is unknown.; PDB: 2K4M_A.
Probab=91.55 E-value=0.6 Score=33.96 Aligned_cols=91 Identities=20% Similarity=0.208 Sum_probs=48.4
Q ss_pred HHHHHHhhhccCCCCCCCCCCCCeEEEeCCCc-cHHHHHHHHhCCEEEEecchhhHHHHHHHHHHhhccccccCCCCCCC
Q 027530 44 VFVKYLEKNCRKGRFCPSKLKGKRVIELGAGC-GVAGFGMALLGCNVITTDQIEVLPLLKRNVEWNTSRISQMNPGSGNL 122 (222)
Q Consensus 44 ~la~~l~~~~~~~~~~~~~~~~~~vLelGcG~-G~~~i~la~~g~~v~~~D~~~~l~~~~~n~~~n~~~~~~~~~~~~~~ 122 (222)
-+|+|+.... ...+++|+|-|. --++..|+..|..|++||+.+. ++. .+
T Consensus 3 ~~a~~ia~~~----------~~~kiVEVGiG~~~~vA~~L~~~G~dV~~tDi~~~------~a~-~g------------- 52 (127)
T PF03686_consen 3 DFAEYIARLN----------NYGKIVEVGIGFNPEVAKKLKERGFDVIATDINPR------KAP-EG------------- 52 (127)
T ss_dssp HHHHHHHHHS-----------SSEEEEET-TT--HHHHHHHHHS-EEEEE-SS-S-----------S-------------
T ss_pred hHHHHHHHhC----------CCCcEEEECcCCCHHHHHHHHHcCCcEEEEECccc------ccc-cC-------------
Confidence 4788887542 234999999997 4578888899999999998442 222 22
Q ss_pred CCceEEEEeecCCCccccccCCCccEEEEeccccCccCHHHHHHHHHHh
Q 027530 123 LGSIQAVELDWGNEDHIKAVAPPFDYIIGTDVVYAEHLLEPLLQTIFAL 171 (222)
Q Consensus 123 ~~~v~~~~~d~~~~~~~~~~~~~fD~Ii~~d~~y~~~~~~~ll~~~~~~ 171 (222)
+.+..=|..++.. ..-...|+|.|--+- .+.+..+++..+++
T Consensus 53 ---~~~v~DDif~P~l--~iY~~a~lIYSiRPP--~El~~~il~lA~~v 94 (127)
T PF03686_consen 53 ---VNFVVDDIFNPNL--EIYEGADLIYSIRPP--PELQPPILELAKKV 94 (127)
T ss_dssp ---TTEE---SSS--H--HHHTTEEEEEEES----TTSHHHHHHHHHHH
T ss_pred ---cceeeecccCCCH--HHhcCCcEEEEeCCC--hHHhHHHHHHHHHh
Confidence 2334322222111 112467777776554 55666666666665
No 316
>cd00401 AdoHcyase S-adenosyl-L-homocysteine hydrolase (AdoHycase) catalyzes the hydrolysis of S-adenosyl-L-homocysteine (AdoHyc) to form adenosine (Ado) and homocysteine (Hcy). The equilibrium lies far on the side of AdoHyc synthesis, but in nature the removal of Ado and Hyc is sufficiently fast, so that the net reaction is in the direction of hydrolysis. Since AdoHyc is a potent inhibitor of S-adenosyl-L-methionine dependent methyltransferases, AdoHycase plays a critical role in the modulation of the activity of various methyltransferases. The enzyme forms homooligomers of 45-50kDa subunits, each binding one molecule of NAD+.
Probab=91.46 E-value=2.4 Score=37.32 Aligned_cols=89 Identities=13% Similarity=0.053 Sum_probs=53.8
Q ss_pred CCCCCCeEEEeCCCc-cHHHHHHH-HhCCEEEEecc-hhhHHHHHHHHHHhhccccccCCCCCCCCCceEEEEeecCCCc
Q 027530 61 SKLKGKRVIELGAGC-GVAGFGMA-LLGCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSGNLLGSIQAVELDWGNED 137 (222)
Q Consensus 61 ~~~~~~~vLelGcG~-G~~~i~la-~~g~~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~v~~~~~d~~~~~ 137 (222)
....|++|+=+|+|. |......+ ..|++|+.+|. +.-...++. .+. ..... .
T Consensus 198 ~~l~GktVvViG~G~IG~~va~~ak~~Ga~ViV~d~d~~R~~~A~~----~G~----------------~~~~~-----~ 252 (413)
T cd00401 198 VMIAGKVAVVAGYGDVGKGCAQSLRGQGARVIVTEVDPICALQAAM----EGY----------------EVMTM-----E 252 (413)
T ss_pred CCCCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEECChhhHHHHHh----cCC----------------EEccH-----H
Confidence 356899999999997 77665544 45889999997 443333332 221 11110 1
Q ss_pred cccccCCCccEEEEeccccCccCHHHHHH-HHHHhcCCCeEEEEEEE
Q 027530 138 HIKAVAPPFDYIIGTDVVYAEHLLEPLLQ-TIFALSGPKTTILLGYE 183 (222)
Q Consensus 138 ~~~~~~~~fD~Ii~~d~~y~~~~~~~ll~-~~~~~l~~~g~~~l~~~ 183 (222)
+ .-..+|+|+.+. .. ...+. ...+.+++||+++.+..
T Consensus 253 e---~v~~aDVVI~at-----G~-~~~i~~~~l~~mk~GgilvnvG~ 290 (413)
T cd00401 253 E---AVKEGDIFVTTT-----GN-KDIITGEHFEQMKDGAIVCNIGH 290 (413)
T ss_pred H---HHcCCCEEEECC-----CC-HHHHHHHHHhcCCCCcEEEEeCC
Confidence 1 113579988652 22 33444 44778999998877654
No 317
>TIGR01202 bchC 2-desacetyl-2-hydroxyethyl bacteriochlorophyllide A dehydrogenase.
Probab=91.06 E-value=1.5 Score=36.71 Aligned_cols=84 Identities=14% Similarity=0.011 Sum_probs=49.1
Q ss_pred CCCeEEEeCCCc-cHHHHHHHH-hCCE-EEEecc-hhhHHHHHHHHHHhhccccccCCCCCCCCCceEEEEeecCCCccc
Q 027530 64 KGKRVIELGAGC-GVAGFGMAL-LGCN-VITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSGNLLGSIQAVELDWGNEDHI 139 (222)
Q Consensus 64 ~~~~vLelGcG~-G~~~i~la~-~g~~-v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~ 139 (222)
++++||=+|||. |+.++.+|+ .|++ |+++|. ++-++.++.. .. + +-.+ .
T Consensus 144 ~~~~vlV~G~G~vG~~a~q~ak~~G~~~v~~~~~~~~rl~~a~~~----~~---------------i-----~~~~-~-- 196 (308)
T TIGR01202 144 KVLPDLIVGHGTLGRLLARLTKAAGGSPPAVWETNPRRRDGATGY----EV---------------L-----DPEK-D-- 196 (308)
T ss_pred CCCcEEEECCCHHHHHHHHHHHHcCCceEEEeCCCHHHHHhhhhc----cc---------------c-----Chhh-c--
Confidence 567898889886 777776665 4876 667776 4433333211 00 0 0000 0
Q ss_pred cccCCCccEEEEeccccCccCHHHHHHHHHHhcCCCeEEEEEE
Q 027530 140 KAVAPPFDYIIGTDVVYAEHLLEPLLQTIFALSGPKTTILLGY 182 (222)
Q Consensus 140 ~~~~~~fD~Ii~~d~~y~~~~~~~ll~~~~~~l~~~g~~~l~~ 182 (222)
....+|+|+-+ . -....+....++++++|++++..
T Consensus 197 --~~~g~Dvvid~--~----G~~~~~~~~~~~l~~~G~iv~~G 231 (308)
T TIGR01202 197 --PRRDYRAIYDA--S----GDPSLIDTLVRRLAKGGEIVLAG 231 (308)
T ss_pred --cCCCCCEEEEC--C----CCHHHHHHHHHhhhcCcEEEEEe
Confidence 13468888743 2 12345677778889999887654
No 318
>PF08468 MTS_N: Methyltransferase small domain N-terminal; InterPro: IPR013675 This domain is found to the N terminus of the methyltransferase small domain (IPR007848 from INTERPRO) in bacterial proteins []. ; GO: 0008990 rRNA (guanine-N2-)-methyltransferase activity, 0006364 rRNA processing; PDB: 2PJD_A.
Probab=90.73 E-value=0.81 Score=34.63 Aligned_cols=100 Identities=18% Similarity=0.201 Sum_probs=50.8
Q ss_pred CCCCCCeEEEeCCCccHHHHHHHHhCCEEEEecchhhHHHHHHHHHHhhccccccCCCCCCCCCceEEEEeecCCCcccc
Q 027530 61 SKLKGKRVIELGAGCGVAGFGMALLGCNVITTDQIEVLPLLKRNVEWNTSRISQMNPGSGNLLGSIQAVELDWGNEDHIK 140 (222)
Q Consensus 61 ~~~~~~~vLelGcG~G~~~i~la~~g~~v~~~D~~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~ 140 (222)
+.+.|++||=+|.=.-.+...+...+.+|++........... ..+ .++.+. .+. ..
T Consensus 9 ~~f~~k~vL~~g~~~D~~~~~L~~~~~~v~~~~~~~~~~~~~---~~~---------------~~~~~~---f~~--~~- 64 (155)
T PF08468_consen 9 DLFEGKSVLFAGDPQDDLPAQLPAIAVSVHVFSYHHWYALQK---QAQ---------------SNVQFH---FGA--EL- 64 (155)
T ss_dssp HHHTT-EEEEEE---SSHHHHS--SEEEEEESBHHHHHHHHH---HHG---------------GGEEE----SS----H-
T ss_pred HHHCCCeEEEEcCCchhhHHHhhhcCCEEEEEEchHHHHHhH---hcc---------------cCceEe---eec--cC-
Confidence 567889999887655555555554555666554321111111 111 123332 111 11
Q ss_pred ccCCCccEEEEeccccCccCHH---HHHHHHHHhcCCCeEEEEEEEEcChh
Q 027530 141 AVAPPFDYIIGTDVVYAEHLLE---PLLQTIFALSGPKTTILLGYEIRSTS 188 (222)
Q Consensus 141 ~~~~~fD~Ii~~d~~y~~~~~~---~ll~~~~~~l~~~g~~~l~~~~r~~~ 188 (222)
.....||.|| +|++..-. -++..+...|++|+.++++..+|..-
T Consensus 65 ~~~~~~D~vv----ly~PKaK~e~~~lL~~l~~~L~~g~~i~vVGEnk~GI 111 (155)
T PF08468_consen 65 PADQDFDTVV----LYWPKAKAEAQYLLANLLSHLPPGTEIFVVGENKGGI 111 (155)
T ss_dssp HHHTT-SEEE----EE--SSHHHHHHHHHHHHTTS-TT-EEEEEEEGGGTG
T ss_pred CcccCCCEEE----EEccCcHHHHHHHHHHHHHhCCCCCEEEEEecCcccH
Confidence 1235799998 56665543 36778888899999999999998873
No 319
>PRK12548 shikimate 5-dehydrogenase; Provisional
Probab=90.26 E-value=2.4 Score=35.40 Aligned_cols=80 Identities=21% Similarity=0.290 Sum_probs=42.6
Q ss_pred CCCCCeEEEeCCCccHHH---HHHHHhCCE-EEEecch----hhHHHHHHHHHHhhccccccCCCCCCCCCceEEEEeec
Q 027530 62 KLKGKRVIELGAGCGVAG---FGMALLGCN-VITTDQI----EVLPLLKRNVEWNTSRISQMNPGSGNLLGSIQAVELDW 133 (222)
Q Consensus 62 ~~~~~~vLelGcG~G~~~---i~la~~g~~-v~~~D~~----~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~v~~~~~d~ 133 (222)
..+++++|=+|+| |.-- ..++..|++ |+.++.. +..+.+.+.+... ...+.+...+|
T Consensus 123 ~~~~k~vlI~GAG-GagrAia~~La~~G~~~V~I~~R~~~~~~~a~~l~~~l~~~--------------~~~~~~~~~d~ 187 (289)
T PRK12548 123 DVKGKKLTVIGAG-GAATAIQVQCALDGAKEITIFNIKDDFYERAEQTAEKIKQE--------------VPECIVNVYDL 187 (289)
T ss_pred CcCCCEEEEECCc-HHHHHHHHHHHHCCCCEEEEEeCCchHHHHHHHHHHHHhhc--------------CCCceeEEech
Confidence 4578899999998 5422 234466875 9888863 2222222222211 11233445555
Q ss_pred CCCccccccCCCccEEEEecccc
Q 027530 134 GNEDHIKAVAPPFDYIIGTDVVY 156 (222)
Q Consensus 134 ~~~~~~~~~~~~fD~Ii~~d~~y 156 (222)
.+.......-..+|+||.+-++=
T Consensus 188 ~~~~~~~~~~~~~DilINaTp~G 210 (289)
T PRK12548 188 NDTEKLKAEIASSDILVNATLVG 210 (289)
T ss_pred hhhhHHHhhhccCCEEEEeCCCC
Confidence 54322221224579988876654
No 320
>PRK05708 2-dehydropantoate 2-reductase; Provisional
Probab=90.21 E-value=1.8 Score=36.39 Aligned_cols=100 Identities=15% Similarity=0.066 Sum_probs=57.3
Q ss_pred CeEEEeCCCc--cHHHHHHHHhCCEEEEecc-hhhHHHHHHHHHHhhccccccCCCCCCCCCceEEEEeecCCCcccccc
Q 027530 66 KRVIELGAGC--GVAGFGMALLGCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSGNLLGSIQAVELDWGNEDHIKAV 142 (222)
Q Consensus 66 ~~vLelGcG~--G~~~i~la~~g~~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~ 142 (222)
.+|+=+|+|. |+++..|++.|.+|++++. .+-++..++ .+++.+.. . .....+ ....... ..
T Consensus 3 m~I~IiGaGaiG~~~a~~L~~~G~~V~lv~r~~~~~~~i~~---~~Gl~i~~--~-----g~~~~~-~~~~~~~----~~ 67 (305)
T PRK05708 3 MTWHILGAGSLGSLWACRLARAGLPVRLILRDRQRLAAYQQ---AGGLTLVE--Q-----GQASLY-AIPAETA----DA 67 (305)
T ss_pred ceEEEECCCHHHHHHHHHHHhCCCCeEEEEechHHHHHHhh---cCCeEEee--C-----Ccceee-ccCCCCc----cc
Confidence 4689999996 6788888888999999997 444444433 12322110 0 001111 1111111 12
Q ss_pred CCCccEEEEeccccCccCHHHHHHHHHHhcCCCeEEEEEEE
Q 027530 143 APPFDYIIGTDVVYAEHLLEPLLQTIFALSGPKTTILLGYE 183 (222)
Q Consensus 143 ~~~fD~Ii~~d~~y~~~~~~~ll~~~~~~l~~~g~~~l~~~ 183 (222)
.+.||+||.+-=- ......++.+..++.+++.++....
T Consensus 68 ~~~~D~viv~vK~---~~~~~al~~l~~~l~~~t~vv~lQN 105 (305)
T PRK05708 68 AEPIHRLLLACKA---YDAEPAVASLAHRLAPGAELLLLQN 105 (305)
T ss_pred ccccCEEEEECCH---HhHHHHHHHHHhhCCCCCEEEEEeC
Confidence 3579998765211 2355677888888888887665543
No 321
>TIGR00561 pntA NAD(P) transhydrogenase, alpha subunit. In some species, such as Rhodospirillum rubrum, the alpha chain is replaced by two shorter chains, both with some homology to the full-length alpha chain modeled here. These score below the trusted cutoff.
Probab=90.13 E-value=2.3 Score=38.51 Aligned_cols=41 Identities=34% Similarity=0.472 Sum_probs=30.4
Q ss_pred CCCCeEEEeCCCc-cHHHHHHHH-hCCEEEEecc-hhhHHHHHH
Q 027530 63 LKGKRVIELGAGC-GVAGFGMAL-LGCNVITTDQ-IEVLPLLKR 103 (222)
Q Consensus 63 ~~~~~vLelGcG~-G~~~i~la~-~g~~v~~~D~-~~~l~~~~~ 103 (222)
.++.+|+=+|||. |+.++.+++ +|+.|+.+|. ++.++.++.
T Consensus 162 vp~akVlViGaG~iGl~Aa~~ak~lGA~V~v~d~~~~rle~a~~ 205 (511)
T TIGR00561 162 VPPAKVLVIGAGVAGLAAIGAANSLGAIVRAFDTRPEVKEQVQS 205 (511)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHH
Confidence 4568999999996 787776664 5899999997 555555443
No 322
>KOG2651 consensus rRNA adenine N-6-methyltransferase [RNA processing and modification]
Probab=90.05 E-value=1.2 Score=38.61 Aligned_cols=35 Identities=26% Similarity=0.454 Sum_probs=28.5
Q ss_pred CCCC-CeEEEeCCCccHHHHHHHH-hCCEEEEecchh
Q 027530 62 KLKG-KRVIELGAGCGVAGFGMAL-LGCNVITTDQIE 96 (222)
Q Consensus 62 ~~~~-~~vLelGcG~G~~~i~la~-~g~~v~~~D~~~ 96 (222)
++-| +.|+|+|+|.|.++-+++- .|..|.++|-+.
T Consensus 150 ~f~gi~~vvD~GaG~G~LSr~lSl~y~lsV~aIegsq 186 (476)
T KOG2651|consen 150 DFTGIDQVVDVGAGQGHLSRFLSLGYGLSVKAIEGSQ 186 (476)
T ss_pred hhcCCCeeEEcCCCchHHHHHHhhccCceEEEeccch
Confidence 3444 5799999999999988884 577899999765
No 323
>PRK06124 gluconate 5-dehydrogenase; Provisional
Probab=89.76 E-value=9.1 Score=30.66 Aligned_cols=81 Identities=17% Similarity=0.238 Sum_probs=49.4
Q ss_pred CCCCCCeEEEeCCCccHHH---HHHHHhCCEEEEecc-hhhHHHHHHHHHHhhccccccCCCCCCCCCceEEEEeecCCC
Q 027530 61 SKLKGKRVIELGAGCGVAG---FGMALLGCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSGNLLGSIQAVELDWGNE 136 (222)
Q Consensus 61 ~~~~~~~vLelGcG~G~~~---i~la~~g~~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~v~~~~~d~~~~ 136 (222)
..++++++|=.|++.|+-. ..+++.|++|++++. ++.++.+.+.++..+ .++.+...|..+.
T Consensus 7 ~~~~~k~ilItGas~~IG~~la~~l~~~G~~v~~~~r~~~~~~~~~~~~~~~~--------------~~~~~~~~Dl~~~ 72 (256)
T PRK06124 7 FSLAGQVALVTGSARGLGFEIARALAGAGAHVLVNGRNAATLEAAVAALRAAG--------------GAAEALAFDIADE 72 (256)
T ss_pred cCCCCCEEEEECCCchHHHHHHHHHHHcCCeEEEEeCCHHHHHHHHHHHHhcC--------------CceEEEEccCCCH
Confidence 3467899999997665422 233456889999997 445554444444322 3467777787765
Q ss_pred cccc-------ccCCCccEEEEeccc
Q 027530 137 DHIK-------AVAPPFDYIIGTDVV 155 (222)
Q Consensus 137 ~~~~-------~~~~~fD~Ii~~d~~ 155 (222)
.... ..-++.|.+|.+--.
T Consensus 73 ~~~~~~~~~~~~~~~~id~vi~~ag~ 98 (256)
T PRK06124 73 EAVAAAFARIDAEHGRLDILVNNVGA 98 (256)
T ss_pred HHHHHHHHHHHHhcCCCCEEEECCCC
Confidence 4321 112468998876443
No 324
>PRK06701 short chain dehydrogenase; Provisional
Probab=89.04 E-value=5 Score=33.23 Aligned_cols=79 Identities=20% Similarity=0.156 Sum_probs=45.8
Q ss_pred CCCCCeEEEeCCCccH---HHHHHHHhCCEEEEecch-h-hHHHHHHHHHHhhccccccCCCCCCCCCceEEEEeecCCC
Q 027530 62 KLKGKRVIELGAGCGV---AGFGMALLGCNVITTDQI-E-VLPLLKRNVEWNTSRISQMNPGSGNLLGSIQAVELDWGNE 136 (222)
Q Consensus 62 ~~~~~~vLelGcG~G~---~~i~la~~g~~v~~~D~~-~-~l~~~~~n~~~n~~~~~~~~~~~~~~~~~v~~~~~d~~~~ 136 (222)
.++++++|=.|++.|+ ++..+++.|++|++++.. + .++.....++.. ..++.+...|..+.
T Consensus 43 ~~~~k~iLItGasggIG~~la~~l~~~G~~V~l~~r~~~~~~~~~~~~~~~~--------------~~~~~~~~~Dl~~~ 108 (290)
T PRK06701 43 KLKGKVALITGGDSGIGRAVAVLFAKEGADIAIVYLDEHEDANETKQRVEKE--------------GVKCLLIPGDVSDE 108 (290)
T ss_pred CCCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEeCCcchHHHHHHHHHHhc--------------CCeEEEEEccCCCH
Confidence 5577899999987665 223344568999988863 2 233333323221 13566777777665
Q ss_pred ccccc-------cCCCccEEEEecc
Q 027530 137 DHIKA-------VAPPFDYIIGTDV 154 (222)
Q Consensus 137 ~~~~~-------~~~~fD~Ii~~d~ 154 (222)
..... .-.+.|+||.+-.
T Consensus 109 ~~~~~~~~~i~~~~~~iD~lI~~Ag 133 (290)
T PRK06701 109 AFCKDAVEETVRELGRLDILVNNAA 133 (290)
T ss_pred HHHHHHHHHHHHHcCCCCEEEECCc
Confidence 43211 1246898886543
No 325
>cd08254 hydroxyacyl_CoA_DH 6-hydroxycyclohex-1-ene-1-carboxyl-CoA dehydrogenase, N-benzyl-3-pyrrolidinol dehydrogenase, and other MDR family members. This group contains enzymes of the zinc-dependent alcohol dehydrogenase family, including members (aka MDR) identified as 6-hydroxycyclohex-1-ene-1-carboxyl-CoA dehydrogenase and N-benzyl-3-pyrrolidinol dehydrogenase. 6-hydroxycyclohex-1-ene-1-carboxyl-CoA dehydrogenase catalyzes the conversion of 6-Hydroxycyclohex-1-enecarbonyl-CoA and NAD+ to 6-Ketoxycyclohex-1-ene-1-carboxyl-CoA,NADH, and H+. This group displays the characteristic catalytic and structural zinc sites of the zinc-dependent alcohol dehydrogenases. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentatio
Probab=88.94 E-value=2.7 Score=35.10 Aligned_cols=97 Identities=22% Similarity=0.286 Sum_probs=52.9
Q ss_pred CCCCCeEEEeCCCc-cHHHHHHHH-hCCEEEEecc-hhhHHHHHHHHHHhhccccccCCCCCCCCCceEEEEeecCCCcc
Q 027530 62 KLKGKRVIELGAGC-GVAGFGMAL-LGCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSGNLLGSIQAVELDWGNEDH 138 (222)
Q Consensus 62 ~~~~~~vLelGcG~-G~~~i~la~-~g~~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~ 138 (222)
...+.+||..|+|. |...+.+|+ .|.+|++++. ++..+.+++ .+.. ..+.....++...-
T Consensus 163 ~~~~~~vli~g~g~vG~~~~~la~~~G~~V~~~~~s~~~~~~~~~----~g~~------------~~~~~~~~~~~~~~- 225 (338)
T cd08254 163 VKPGETVLVIGLGGLGLNAVQIAKAMGAAVIAVDIKEEKLELAKE----LGAD------------EVLNSLDDSPKDKK- 225 (338)
T ss_pred CCCCCEEEEECCcHHHHHHHHHHHHcCCEEEEEcCCHHHHHHHHH----hCCC------------EEEcCCCcCHHHHH-
Confidence 34567888888763 666666665 5888999986 445554432 2211 00000000000000
Q ss_pred ccccCCCccEEEEeccccCccCHHHHHHHHHHhcCCCeEEEEE
Q 027530 139 IKAVAPPFDYIIGTDVVYAEHLLEPLLQTIFALSGPKTTILLG 181 (222)
Q Consensus 139 ~~~~~~~fD~Ii~~d~~y~~~~~~~ll~~~~~~l~~~g~~~l~ 181 (222)
.......+|+++-+ .. ....++...+.|+++|.++..
T Consensus 226 ~~~~~~~~D~vid~--~g----~~~~~~~~~~~l~~~G~~v~~ 262 (338)
T cd08254 226 AAGLGGGFDVIFDF--VG----TQPTFEDAQKAVKPGGRIVVV 262 (338)
T ss_pred HHhcCCCceEEEEC--CC----CHHHHHHHHHHhhcCCEEEEE
Confidence 01124579988843 21 134677778889999988754
No 326
>PRK10458 DNA cytosine methylase; Provisional
Probab=88.86 E-value=1.6 Score=39.11 Aligned_cols=41 Identities=29% Similarity=0.319 Sum_probs=33.1
Q ss_pred CCeEEEeCCCccHHHHHHHHhCCE-EEEecc-hhhHHHHHHHH
Q 027530 65 GKRVIELGAGCGVAGFGMALLGCN-VITTDQ-IEVLPLLKRNV 105 (222)
Q Consensus 65 ~~~vLelGcG~G~~~i~la~~g~~-v~~~D~-~~~l~~~~~n~ 105 (222)
..+++||.||.|-+++.+-..|.+ |.++|. +.+.+.-+.|.
T Consensus 88 ~~~~iDLFsGiGGl~lGfe~aG~~~v~a~Eid~~A~~TY~~N~ 130 (467)
T PRK10458 88 AFRFIDLFAGIGGIRRGFEAIGGQCVFTSEWNKHAVRTYKANW 130 (467)
T ss_pred CceEEEeCcCccHHHHHHHHcCCEEEEEEechHHHHHHHHHHc
Confidence 458999999999888888888987 567898 44777777775
No 327
>KOG1099 consensus SAM-dependent methyltransferase/cell division protein FtsJ [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=88.86 E-value=0.95 Score=36.52 Aligned_cols=102 Identities=17% Similarity=0.185 Sum_probs=58.9
Q ss_pred CCCC-CeEEEeCCCccHHHHHHHHh--------CC---EEEEecchhhHHHHHHHHHHhhccccccCCCCCCCCCceEEE
Q 027530 62 KLKG-KRVIELGAGCGVAGFGMALL--------GC---NVITTDQIEVLPLLKRNVEWNTSRISQMNPGSGNLLGSIQAV 129 (222)
Q Consensus 62 ~~~~-~~vLelGcG~G~~~i~la~~--------g~---~v~~~D~~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~v~~~ 129 (222)
.++| ++++||++-.|-.+..++++ +. +++++|+..|... +-|...
T Consensus 38 i~~gv~rvVDLCAAPGSWSQvlSrkL~~~~~~~~~~~~kIVaVDLQ~MaPI-----------------------~GV~ql 94 (294)
T KOG1099|consen 38 IFEGVKRVVDLCAAPGSWSQVLSRKLYKPLPSSGERDKKIVAVDLQPMAPI-----------------------EGVIQL 94 (294)
T ss_pred HHhhhhHHhhhhcCCCcHHHHHHHHHhccCCCcchhhccEEEEecccCCcc-----------------------CceEEe
Confidence 4555 57999999999999999975 22 2899997543221 123334
Q ss_pred EeecCCCccc----c-ccCCCccEEEEecccc--CccC---------HHHHHHHHHHhcCCCeEEEEEEEEcCh
Q 027530 130 ELDWGNEDHI----K-AVAPPFDYIIGTDVVY--AEHL---------LEPLLQTIFALSGPKTTILLGYEIRST 187 (222)
Q Consensus 130 ~~d~~~~~~~----~-~~~~~fD~Ii~~d~~y--~~~~---------~~~ll~~~~~~l~~~g~~~l~~~~r~~ 187 (222)
+.|....... . +..++.|+|++-..-- ..++ +...+.....+|+|||.++ +-..|..
T Consensus 95 q~DIT~~stae~Ii~hfggekAdlVvcDGAPDvTGlHd~DEy~Q~qLllaAl~i~t~Vlk~Gg~FV-aKifRg~ 167 (294)
T KOG1099|consen 95 QGDITSASTAEAIIEHFGGEKADLVVCDGAPDVTGLHDLDEYVQAQLLLAALNIATCVLKPGGSFV-AKIFRGR 167 (294)
T ss_pred ecccCCHhHHHHHHHHhCCCCccEEEeCCCCCccccccHHHHHHHHHHHHHHHHHhheecCCCeee-hhhhccC
Confidence 4444333221 1 2356899999753321 1122 2233444456699999864 3334444
No 328
>COG4798 Predicted methyltransferase [General function prediction only]
Probab=88.80 E-value=1.9 Score=34.00 Aligned_cols=111 Identities=13% Similarity=0.091 Sum_probs=56.2
Q ss_pred CCCCCeEEEeCCCccHHHHHHHHh-CC--EEEEecchhhHH-HHHHHHHHhhccccccCCCCCCCCCceEEEEeecCCCc
Q 027530 62 KLKGKRVIELGAGCGVAGFGMALL-GC--NVITTDQIEVLP-LLKRNVEWNTSRISQMNPGSGNLLGSIQAVELDWGNED 137 (222)
Q Consensus 62 ~~~~~~vLelGcG~G~~~i~la~~-g~--~v~~~D~~~~l~-~~~~n~~~n~~~~~~~~~~~~~~~~~v~~~~~d~~~~~ 137 (222)
..+|.+|+|+=-|.|..+-.++.. |+ .|++.--.+... ..++--+.+..... ....+++......-
T Consensus 46 lkpg~tVid~~PGgGy~TrI~s~~vgp~G~Vy~~~p~e~~~~~~~~~~r~~~~~~e-------~~~aN~e~~~~~~~--- 115 (238)
T COG4798 46 LKPGATVIDLIPGGGYFTRIFSPAVGPKGKVYAYVPAELTKFAKREGPRLNAAARE-------PVYANVEVIGKPLV--- 115 (238)
T ss_pred cCCCCEEEEEecCCccHhhhhchhcCCceeEEEecchhhcccccchhhhhhhhhhh-------hhhhhhhhhCCccc---
Confidence 457889999999999999887764 44 365443222111 11110111110000 00111221110000
Q ss_pred cccccCCCccEEEE--------eccccCccCHHHHHHHHHHhcCCCeEEEEEEEE
Q 027530 138 HIKAVAPPFDYIIG--------TDVVYAEHLLEPLLQTIFALSGPKTTILLGYEI 184 (222)
Q Consensus 138 ~~~~~~~~fD~Ii~--------~d~~y~~~~~~~ll~~~~~~l~~~g~~~l~~~~ 184 (222)
.+. ..+..|++.. +-.++ ......+.+.+.+.|||||++.+..+.
T Consensus 116 A~~-~pq~~d~~~~~~~yhdmh~k~i~-~~~A~~vna~vf~~LKPGGv~~V~dH~ 168 (238)
T COG4798 116 ALG-APQKLDLVPTAQNYHDMHNKNIH-PATAAKVNAAVFKALKPGGVYLVEDHR 168 (238)
T ss_pred ccC-CCCcccccccchhhhhhhccccC-cchHHHHHHHHHHhcCCCcEEEEEecc
Confidence 001 2234444443 33332 455778899999999999998887654
No 329
>TIGR00518 alaDH alanine dehydrogenase. The family of known L-alanine dehydrogenases includes representatives from the Proteobacteria, Firmicutes, and Cyanobacteria, all with about 50 % identity or better. An outlier to this group in both sequence and gap pattern is the homolog from Helicobacter pylori, an epsilon division Proteobacteria, which must be considered a putative alanine dehydrogenase. Related proteins include saccharopine dehydrogenase and the N-terminal half of the NAD(P) transhydrogenase alpha subunit. All of these related proteins bind NAD and/or NADP.
Probab=88.68 E-value=1.6 Score=37.94 Aligned_cols=38 Identities=32% Similarity=0.386 Sum_probs=25.9
Q ss_pred CCCCeEEEeCCCc-cHHHHHHH-HhCCEEEEecc-hhhHHH
Q 027530 63 LKGKRVIELGAGC-GVAGFGMA-LLGCNVITTDQ-IEVLPL 100 (222)
Q Consensus 63 ~~~~~vLelGcG~-G~~~i~la-~~g~~v~~~D~-~~~l~~ 100 (222)
.++.+|+=+|+|. |...+..+ .+|++|+.+|. ++.++.
T Consensus 165 l~~~~VlViGaG~vG~~aa~~a~~lGa~V~v~d~~~~~~~~ 205 (370)
T TIGR00518 165 VEPGDVTIIGGGVVGTNAAKMANGLGATVTILDINIDRLRQ 205 (370)
T ss_pred CCCceEEEEcCCHHHHHHHHHHHHCCCeEEEEECCHHHHHH
Confidence 3557799999984 66555444 45889999997 444333
No 330
>PF02086 MethyltransfD12: D12 class N6 adenine-specific DNA methyltransferase; InterPro: IPR012327 In prokaryotes, the major role of DNA methylation is to protect host DNA against degradation by restriction enzymes. There are 2 major classes of DNA methyltransferase that differ in the nature of the modifications they effect. The members of one class (C-MTases) methylate a ring carbon and form C5-methylcytosine (see IPR001525 from INTERPRO). Members of the second class (N-MTases) methylate exocyclic nitrogens and form either N4-methylcytosine (N4-MTases) or N6-methyladenine (N6-MTases). Both classes of MTase utilise the cofactor S-adenosyl-L-methionine (SAM) as the methyl donor and are active as monomeric enzymes []. N-6 adenine-specific DNA methylases (2.1.1.72 from EC) (A-Mtase) are enzymes that specifically methylate the amino group at the C-6 position of adenines in DNA. Such enzymes are found in the three existing types of bacterial restriction-modification systems (in type I system the A-Mtase is the product of the hsdM gene, and in type III it is the product of the mod gene). All of these enzymes recognise a specific sequence in DNA and methylate an adenine in that sequence. It has been shown [, , , ] that A-Mtases contain a conserved motif Asp/Asn-Pro-Pro-Tyr/Phe in their N-terminal section, this conserved region could be involved in substrate binding or in the catalytic activity. The structure of N6-MTase TaqI (M.TaqI) has been resolved to 2.4 A []. The molecule folds into 2 domains, an N-terminal catalytic domain, which contains the catalytic and cofactor binding sites, and comprises a central 9-stranded beta-sheet, surrounded by 5 helices; and a C-terminal DNA recognition domain, which is formed by 4 small beta-sheets and 8 alpha-helices. The N- and C-terminal domains form a cleft that accommodates the DNA substrate. A classification of N-MTases has been proposed, based on conserved motif (CM) arrangements []. According to this classification, N6-MTases that have a DPPY motif (CM II) occuring after the FxGxG motif (CM I) are designated D12 class N6-adenine MTases.; GO: 0009007 site-specific DNA-methyltransferase (adenine-specific) activity, 0032775 DNA methylation on adenine; PDB: 1Q0T_B 1YFJ_B 1Q0S_A 1YFL_B 1YF3_B 2DPM_A 2ORE_F 2G1P_B.
Probab=88.33 E-value=0.91 Score=36.84 Aligned_cols=45 Identities=27% Similarity=0.269 Sum_probs=30.5
Q ss_pred HHHHHHhhhccCCCCCCCCCCCCeEEEeCCCccHHHHHHHHhCCEEEEecch
Q 027530 44 VFVKYLEKNCRKGRFCPSKLKGKRVIELGAGCGVAGFGMALLGCNVITTDQI 95 (222)
Q Consensus 44 ~la~~l~~~~~~~~~~~~~~~~~~vLelGcG~G~~~i~la~~g~~v~~~D~~ 95 (222)
.|+.++.+.. |.. ...+++|.-||+|.+++.+...+.+|+.-|+.
T Consensus 7 ~l~~~I~~~i------p~~-~~~~~vepF~G~g~V~~~~~~~~~~vi~ND~~ 51 (260)
T PF02086_consen 7 KLAKWIIELI------PKN-KHKTYVEPFAGGGSVFLNLKQPGKRVIINDIN 51 (260)
T ss_dssp GGHHHHHHHS-------S--S-SEEEETT-TTSHHHHCC---SSEEEEEES-
T ss_pred HHHHHHHHHc------CCC-CCCEEEEEecchhHHHHHhcccccceeeeech
Confidence 4666676653 222 67899999999999999888888899999983
No 331
>PRK06139 short chain dehydrogenase; Provisional
Probab=88.26 E-value=2.3 Score=36.21 Aligned_cols=78 Identities=21% Similarity=0.258 Sum_probs=49.5
Q ss_pred CCCCeEEEeCCCccH---HHHHHHHhCCEEEEecc-hhhHHHHHHHHHHhhccccccCCCCCCCCCceEEEEeecCCCcc
Q 027530 63 LKGKRVIELGAGCGV---AGFGMALLGCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSGNLLGSIQAVELDWGNEDH 138 (222)
Q Consensus 63 ~~~~~vLelGcG~G~---~~i~la~~g~~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~ 138 (222)
.++++||=.|++.|+ +...+++.|++|++++. ++.++.+.+.+...+ ..+.+...|..+.+.
T Consensus 5 l~~k~vlITGAs~GIG~aia~~la~~G~~Vvl~~R~~~~l~~~~~~~~~~g--------------~~~~~~~~Dv~d~~~ 70 (330)
T PRK06139 5 LHGAVVVITGASSGIGQATAEAFARRGARLVLAARDEEALQAVAEECRALG--------------AEVLVVPTDVTDADQ 70 (330)
T ss_pred CCCCEEEEcCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhcC--------------CcEEEEEeeCCCHHH
Confidence 467899999987664 23345567899999987 445555555554332 356667778776543
Q ss_pred ccc-------cCCCccEEEEecc
Q 027530 139 IKA-------VAPPFDYIIGTDV 154 (222)
Q Consensus 139 ~~~-------~~~~fD~Ii~~d~ 154 (222)
... ..+.+|++|.+--
T Consensus 71 v~~~~~~~~~~~g~iD~lVnnAG 93 (330)
T PRK06139 71 VKALATQAASFGGRIDVWVNNVG 93 (330)
T ss_pred HHHHHHHHHHhcCCCCEEEECCC
Confidence 221 1257899987643
No 332
>COG1255 Uncharacterized protein conserved in archaea [Function unknown]
Probab=88.25 E-value=1.1 Score=32.01 Aligned_cols=31 Identities=32% Similarity=0.371 Sum_probs=25.9
Q ss_pred CeEEEeCCCcc-HHHHHHHHhCCEEEEecchh
Q 027530 66 KRVIELGAGCG-VAGFGMALLGCNVITTDQIE 96 (222)
Q Consensus 66 ~~vLelGcG~G-~~~i~la~~g~~v~~~D~~~ 96 (222)
++|.|+|.|-= -++-.+++.|..|++||+.+
T Consensus 15 gkVvEVGiG~~~~VA~~L~e~g~dv~atDI~~ 46 (129)
T COG1255 15 GKVVEVGIGFFLDVAKRLAERGFDVLATDINE 46 (129)
T ss_pred CcEEEEccchHHHHHHHHHHcCCcEEEEeccc
Confidence 48999999974 36778888999999999855
No 333
>TIGR03451 mycoS_dep_FDH mycothiol-dependent formaldehyde dehydrogenase. Members of this protein family are mycothiol-dependent formaldehyde dehydrogenase (EC 1.2.1.66). This protein is found, so far, only in the Actinobacteria (Mycobacterium sp., Streptomyces sp., Corynebacterium sp., and related species), where mycothione replaces glutathione.
Probab=88.13 E-value=1.7 Score=37.20 Aligned_cols=41 Identities=29% Similarity=0.396 Sum_probs=27.8
Q ss_pred CCCCCeEEEeCCCc-cHHHHHHHHh-CCE-EEEecc-hhhHHHHH
Q 027530 62 KLKGKRVIELGAGC-GVAGFGMALL-GCN-VITTDQ-IEVLPLLK 102 (222)
Q Consensus 62 ~~~~~~vLelGcG~-G~~~i~la~~-g~~-v~~~D~-~~~l~~~~ 102 (222)
..+|.+||=.|||. |...+.+|+. |++ |+++|. ++-.+.++
T Consensus 174 ~~~g~~VlV~G~g~vG~~a~~~ak~~G~~~Vi~~~~~~~~~~~~~ 218 (358)
T TIGR03451 174 VKRGDSVAVIGCGGVGDAAIAGAALAGASKIIAVDIDDRKLEWAR 218 (358)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCHHHHHHHH
Confidence 34678999999875 6666666654 774 999987 44455543
No 334
>PLN03154 putative allyl alcohol dehydrogenase; Provisional
Probab=87.88 E-value=3.6 Score=35.10 Aligned_cols=41 Identities=32% Similarity=0.373 Sum_probs=28.0
Q ss_pred CCCCCeEEEeCC-C-ccHHHHHHHH-hCCEEEEecc-hhhHHHHH
Q 027530 62 KLKGKRVIELGA-G-CGVAGFGMAL-LGCNVITTDQ-IEVLPLLK 102 (222)
Q Consensus 62 ~~~~~~vLelGc-G-~G~~~i~la~-~g~~v~~~D~-~~~l~~~~ 102 (222)
..+|.+||=.|+ | .|...+.+|+ +|++|++++. ++-.+.++
T Consensus 156 ~~~g~~VlV~GaaG~vG~~aiqlAk~~G~~Vi~~~~~~~k~~~~~ 200 (348)
T PLN03154 156 PKKGDSVFVSAASGAVGQLVGQLAKLHGCYVVGSAGSSQKVDLLK 200 (348)
T ss_pred CCCCCEEEEecCccHHHHHHHHHHHHcCCEEEEEcCCHHHHHHHH
Confidence 446889999998 4 4777766665 4889998886 44444443
No 335
>COG1893 ApbA Ketopantoate reductase [Coenzyme metabolism]
Probab=87.83 E-value=6.8 Score=33.08 Aligned_cols=99 Identities=26% Similarity=0.324 Sum_probs=59.5
Q ss_pred eEEEeCCCc--cHHHHHHHHhCCEEEEecchhhHHHHHHHHHHhhccccccCCCCCCCCCceEEEEeecCCCccccccCC
Q 027530 67 RVIELGAGC--GVAGFGMALLGCNVITTDQIEVLPLLKRNVEWNTSRISQMNPGSGNLLGSIQAVELDWGNEDHIKAVAP 144 (222)
Q Consensus 67 ~vLelGcG~--G~~~i~la~~g~~v~~~D~~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~ 144 (222)
+|+=+|||. |++|..|++.|..|+++-.++.++..+++ ++.+.... .+....... ........
T Consensus 2 kI~IlGaGAvG~l~g~~L~~~g~~V~~~~R~~~~~~l~~~----GL~i~~~~-------~~~~~~~~~----~~~~~~~~ 66 (307)
T COG1893 2 KILILGAGAIGSLLGARLAKAGHDVTLLVRSRRLEALKKK----GLRIEDEG-------GNFTTPVVA----ATDAEALG 66 (307)
T ss_pred eEEEECCcHHHHHHHHHHHhCCCeEEEEecHHHHHHHHhC----CeEEecCC-------Ccccccccc----ccChhhcC
Confidence 678899996 67888999999667777665544444443 44321110 001111100 01111235
Q ss_pred CccEEEEeccccCccCHHHHHHHHHHhcCCCeEEEEEEE
Q 027530 145 PFDYIIGTDVVYAEHLLEPLLQTIFALSGPKTTILLGYE 183 (222)
Q Consensus 145 ~fD~Ii~~d~~y~~~~~~~ll~~~~~~l~~~g~~~l~~~ 183 (222)
.+|+||..-= ....+..++.+..++++...+++...
T Consensus 67 ~~Dlviv~vK---a~q~~~al~~l~~~~~~~t~vl~lqN 102 (307)
T COG1893 67 PADLVIVTVK---AYQLEEALPSLAPLLGPNTVVLFLQN 102 (307)
T ss_pred CCCEEEEEec---cccHHHHHHHhhhcCCCCcEEEEEeC
Confidence 8999986522 34577899999999999988766543
No 336
>PRK08339 short chain dehydrogenase; Provisional
Probab=87.76 E-value=2.7 Score=34.21 Aligned_cols=79 Identities=15% Similarity=0.163 Sum_probs=48.6
Q ss_pred CCCCCeEEEeCCCccH---HHHHHHHhCCEEEEecc-hhhHHHHHHHHHHhhccccccCCCCCCCCCceEEEEeecCCCc
Q 027530 62 KLKGKRVIELGAGCGV---AGFGMALLGCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSGNLLGSIQAVELDWGNED 137 (222)
Q Consensus 62 ~~~~~~vLelGcG~G~---~~i~la~~g~~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~v~~~~~d~~~~~ 137 (222)
.++++++|=.|++.|+ ++..+++.|++|+++|. .+.++.+.+.+.... ..++.+...|..+..
T Consensus 5 ~l~~k~~lItGas~gIG~aia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~-------------~~~~~~~~~Dv~~~~ 71 (263)
T PRK08339 5 DLSGKLAFTTASSKGIGFGVARVLARAGADVILLSRNEENLKKAREKIKSES-------------NVDVSYIVADLTKRE 71 (263)
T ss_pred CCCCCEEEEeCCCCcHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhhc-------------CCceEEEEecCCCHH
Confidence 4578899999988775 33345566999999997 444444444443211 135677777777654
Q ss_pred cccc------cCCCccEEEEec
Q 027530 138 HIKA------VAPPFDYIIGTD 153 (222)
Q Consensus 138 ~~~~------~~~~fD~Ii~~d 153 (222)
.... .-+..|+++.+-
T Consensus 72 ~i~~~~~~~~~~g~iD~lv~na 93 (263)
T PRK08339 72 DLERTVKELKNIGEPDIFFFST 93 (263)
T ss_pred HHHHHHHHHHhhCCCcEEEECC
Confidence 3211 124689888664
No 337
>PRK07326 short chain dehydrogenase; Provisional
Probab=87.74 E-value=6.6 Score=30.97 Aligned_cols=75 Identities=21% Similarity=0.277 Sum_probs=42.8
Q ss_pred CCCeEEEeCCCccHHHHHHH----HhCCEEEEecc-hhhHHHHHHHHHHhhccccccCCCCCCCCCceEEEEeecCCCcc
Q 027530 64 KGKRVIELGAGCGVAGFGMA----LLGCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSGNLLGSIQAVELDWGNEDH 138 (222)
Q Consensus 64 ~~~~vLelGcG~G~~~i~la----~~g~~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~ 138 (222)
.++++|=.|++ |.+|..++ ..|++|++++. ++....+.+.+... ..+.+...|..+...
T Consensus 5 ~~~~ilItGat-g~iG~~la~~l~~~g~~V~~~~r~~~~~~~~~~~l~~~---------------~~~~~~~~D~~~~~~ 68 (237)
T PRK07326 5 KGKVALITGGS-KGIGFAIAEALLAEGYKVAITARDQKELEEAAAELNNK---------------GNVLGLAADVRDEAD 68 (237)
T ss_pred CCCEEEEECCC-CcHHHHHHHHHHHCCCEEEEeeCCHHHHHHHHHHHhcc---------------CcEEEEEccCCCHHH
Confidence 56789999964 44444443 45889999986 44333333333211 246667777665433
Q ss_pred ccc-------cCCCccEEEEecc
Q 027530 139 IKA-------VAPPFDYIIGTDV 154 (222)
Q Consensus 139 ~~~-------~~~~fD~Ii~~d~ 154 (222)
... .-..+|+||.+.-
T Consensus 69 ~~~~~~~~~~~~~~~d~vi~~ag 91 (237)
T PRK07326 69 VQRAVDAIVAAFGGLDVLIANAG 91 (237)
T ss_pred HHHHHHHHHHHcCCCCEEEECCC
Confidence 210 1136899886643
No 338
>COG1565 Uncharacterized conserved protein [Function unknown]
Probab=87.56 E-value=2.4 Score=36.46 Aligned_cols=40 Identities=15% Similarity=0.221 Sum_probs=28.1
Q ss_pred CeEEEeCCCccHHHHHHHHh----------CCEEEEecchhhHHHHHHHH
Q 027530 66 KRVIELGAGCGVAGFGMALL----------GCNVITTDQIEVLPLLKRNV 105 (222)
Q Consensus 66 ~~vLelGcG~G~~~i~la~~----------g~~v~~~D~~~~l~~~~~n~ 105 (222)
-.++|||+|.|.+..-+++. ..++..++.+.-+..-+++.
T Consensus 79 ~~lvEiGaG~G~l~~DiL~~l~~L~P~~~~~~~~~iiE~s~~L~~~Qk~~ 128 (370)
T COG1565 79 LKLVEIGAGRGTLASDILRTLRRLYPELYEALSYYIIEPSPELRARQKET 128 (370)
T ss_pred ceEEEeCCCcChHHHHHHHHHHHhCHHHHhcceEEEEecCHHHHHHHHHH
Confidence 47999999999988655532 34789999866555544443
No 339
>PRK05867 short chain dehydrogenase; Provisional
Probab=87.36 E-value=3.3 Score=33.30 Aligned_cols=80 Identities=20% Similarity=0.315 Sum_probs=48.5
Q ss_pred CCCCCeEEEeCCCccH---HHHHHHHhCCEEEEecc-hhhHHHHHHHHHHhhccccccCCCCCCCCCceEEEEeecCCCc
Q 027530 62 KLKGKRVIELGAGCGV---AGFGMALLGCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSGNLLGSIQAVELDWGNED 137 (222)
Q Consensus 62 ~~~~~~vLelGcG~G~---~~i~la~~g~~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~v~~~~~d~~~~~ 137 (222)
.++++++|=.|++.|+ ++..+++.|++|++++. .+.++.+...+...+ .++.+...|..+..
T Consensus 6 ~~~~k~vlVtGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~l~~~~--------------~~~~~~~~D~~~~~ 71 (253)
T PRK05867 6 DLHGKRALITGASTGIGKRVALAYVEAGAQVAIAARHLDALEKLADEIGTSG--------------GKVVPVCCDVSQHQ 71 (253)
T ss_pred cCCCCEEEEECCCchHHHHHHHHHHHCCCEEEEEcCCHHHHHHHHHHHHhcC--------------CeEEEEEccCCCHH
Confidence 3578899999987765 23344556899999987 444444444443221 24566677776544
Q ss_pred ccc-------ccCCCccEEEEeccc
Q 027530 138 HIK-------AVAPPFDYIIGTDVV 155 (222)
Q Consensus 138 ~~~-------~~~~~fD~Ii~~d~~ 155 (222)
... ..-++.|++|.+.-+
T Consensus 72 ~~~~~~~~~~~~~g~id~lv~~ag~ 96 (253)
T PRK05867 72 QVTSMLDQVTAELGGIDIAVCNAGI 96 (253)
T ss_pred HHHHHHHHHHHHhCCCCEEEECCCC
Confidence 321 112478998876543
No 340
>PRK08265 short chain dehydrogenase; Provisional
Probab=87.31 E-value=8.1 Score=31.22 Aligned_cols=76 Identities=16% Similarity=0.164 Sum_probs=45.0
Q ss_pred CCCCeEEEeCCCccH---HHHHHHHhCCEEEEecch-hhHHHHHHHHHHhhccccccCCCCCCCCCceEEEEeecCCCcc
Q 027530 63 LKGKRVIELGAGCGV---AGFGMALLGCNVITTDQI-EVLPLLKRNVEWNTSRISQMNPGSGNLLGSIQAVELDWGNEDH 138 (222)
Q Consensus 63 ~~~~~vLelGcG~G~---~~i~la~~g~~v~~~D~~-~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~ 138 (222)
++++++|=.|+..|+ ++..+++.|++|+++|.+ +.++.+.+.+ + .++.+...|+.+...
T Consensus 4 ~~~k~vlItGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~---~--------------~~~~~~~~Dl~~~~~ 66 (261)
T PRK08265 4 LAGKVAIVTGGATLIGAAVARALVAAGARVAIVDIDADNGAAVAASL---G--------------ERARFIATDITDDAA 66 (261)
T ss_pred CCCCEEEEECCCChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHh---C--------------CeeEEEEecCCCHHH
Confidence 467899999976654 233445568999999873 3222222111 1 246677778876543
Q ss_pred cc-------ccCCCccEEEEeccc
Q 027530 139 IK-------AVAPPFDYIIGTDVV 155 (222)
Q Consensus 139 ~~-------~~~~~fD~Ii~~d~~ 155 (222)
.. ..-++.|++|.+--.
T Consensus 67 ~~~~~~~~~~~~g~id~lv~~ag~ 90 (261)
T PRK08265 67 IERAVATVVARFGRVDILVNLACT 90 (261)
T ss_pred HHHHHHHHHHHhCCCCEEEECCCC
Confidence 21 112468998876443
No 341
>PRK07109 short chain dehydrogenase; Provisional
Probab=87.22 E-value=11 Score=32.02 Aligned_cols=80 Identities=24% Similarity=0.285 Sum_probs=49.5
Q ss_pred CCCCCeEEEeCCCccHHH---HHHHHhCCEEEEecc-hhhHHHHHHHHHHhhccccccCCCCCCCCCceEEEEeecCCCc
Q 027530 62 KLKGKRVIELGAGCGVAG---FGMALLGCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSGNLLGSIQAVELDWGNED 137 (222)
Q Consensus 62 ~~~~~~vLelGcG~G~~~---i~la~~g~~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~v~~~~~d~~~~~ 137 (222)
..++++||=.|++.|+-. ..+++.|++|++++. ++.++.+.+.+...+ .++.+...|..+..
T Consensus 5 ~l~~k~vlITGas~gIG~~la~~la~~G~~Vvl~~R~~~~l~~~~~~l~~~g--------------~~~~~v~~Dv~d~~ 70 (334)
T PRK07109 5 PIGRQVVVITGASAGVGRATARAFARRGAKVVLLARGEEGLEALAAEIRAAG--------------GEALAVVADVADAE 70 (334)
T ss_pred CCCCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHHcC--------------CcEEEEEecCCCHH
Confidence 356788999998766522 334566899999987 445555555444322 35667777777654
Q ss_pred cccc-------cCCCccEEEEeccc
Q 027530 138 HIKA-------VAPPFDYIIGTDVV 155 (222)
Q Consensus 138 ~~~~-------~~~~fD~Ii~~d~~ 155 (222)
.... .-++.|++|.+--.
T Consensus 71 ~v~~~~~~~~~~~g~iD~lInnAg~ 95 (334)
T PRK07109 71 AVQAAADRAEEELGPIDTWVNNAMV 95 (334)
T ss_pred HHHHHHHHHHHHCCCCCEEEECCCc
Confidence 3221 12478998876443
No 342
>PRK07806 short chain dehydrogenase; Provisional
Probab=87.16 E-value=11 Score=29.89 Aligned_cols=103 Identities=19% Similarity=0.220 Sum_probs=54.0
Q ss_pred CCCCeEEEeCCCccHHHHH----HHHhCCEEEEecc-h-hhHHHHHHHHHHhhccccccCCCCCCCCCceEEEEeecCCC
Q 027530 63 LKGKRVIELGAGCGVAGFG----MALLGCNVITTDQ-I-EVLPLLKRNVEWNTSRISQMNPGSGNLLGSIQAVELDWGNE 136 (222)
Q Consensus 63 ~~~~~vLelGcG~G~~~i~----la~~g~~v~~~D~-~-~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~v~~~~~d~~~~ 136 (222)
+.++++|=.|+..|+ |.. ++..|.+|++++. . +..+.+...++.. ..++.+...|..+.
T Consensus 4 ~~~k~vlItGasggi-G~~l~~~l~~~G~~V~~~~r~~~~~~~~~~~~l~~~--------------~~~~~~~~~D~~~~ 68 (248)
T PRK07806 4 LPGKTALVTGSSRGI-GADTAKILAGAGAHVVVNYRQKAPRANKVVAEIEAA--------------GGRASAVGADLTDE 68 (248)
T ss_pred CCCcEEEEECCCCcH-HHHHHHHHHHCCCEEEEEeCCchHhHHHHHHHHHhc--------------CCceEEEEcCCCCH
Confidence 467899999975543 333 3345889888775 2 2333333323211 13466677777765
Q ss_pred ccccc-------cCCCccEEEEeccccCc-------------cCHHHHHHHHHHhcCCCeEEEE
Q 027530 137 DHIKA-------VAPPFDYIIGTDVVYAE-------------HLLEPLLQTIFALSGPKTTILL 180 (222)
Q Consensus 137 ~~~~~-------~~~~fD~Ii~~d~~y~~-------------~~~~~ll~~~~~~l~~~g~~~l 180 (222)
+.... .-...|++|.+-..... .....+++.+...++.+|.+++
T Consensus 69 ~~~~~~~~~~~~~~~~~d~vi~~ag~~~~~~~~~~~~~~vn~~~~~~l~~~~~~~~~~~~~iv~ 132 (248)
T PRK07806 69 ESVAALMDTAREEFGGLDALVLNASGGMESGMDEDYAMRLNRDAQRNLARAALPLMPAGSRVVF 132 (248)
T ss_pred HHHHHHHHHHHHhCCCCcEEEECCCCCCCCCCCcceeeEeeeHHHHHHHHHHHhhccCCceEEE
Confidence 43211 11368887755322110 0123466666666655555543
No 343
>PRK13699 putative methylase; Provisional
Probab=86.55 E-value=3.2 Score=33.42 Aligned_cols=59 Identities=14% Similarity=0.352 Sum_probs=37.8
Q ss_pred cCCCccEEEEeccccC------c---------cCHHHHHHHHHHhcCCCeEEEEEEEEcChhHHHHHHHHH-hcCCeE
Q 027530 142 VAPPFDYIIGTDVVYA------E---------HLLEPLLQTIFALSGPKTTILLGYEIRSTSVHEQMLQMW-KSNFNV 203 (222)
Q Consensus 142 ~~~~fD~Ii~~d~~y~------~---------~~~~~ll~~~~~~l~~~g~~~l~~~~r~~~~~~~f~~~~-~~~~~v 203 (222)
+++++|+||..+++.. . +-...++..+.++|||||.+++....+.. ..+...+ +.+|.+
T Consensus 17 pd~SVDLIiTDPPY~i~~~~~~~~~~~~~~~~ew~~~~l~E~~RVLKpgg~l~if~~~~~~---~~~~~al~~~GF~l 91 (227)
T PRK13699 17 PDNAVDFILTDPPYLVGFRDRQGRTIAGDKTDEWLQPACNEMYRVLKKDALMVSFYGWNRV---DRFMAAWKNAGFSV 91 (227)
T ss_pred CccccceEEeCCCcccccccCCCcccccccHHHHHHHHHHHHHHHcCCCCEEEEEeccccH---HHHHHHHHHCCCEE
Confidence 4678999998877641 0 11346778888999999988765443322 3344444 347755
No 344
>PRK05854 short chain dehydrogenase; Provisional
Probab=86.45 E-value=5.5 Score=33.44 Aligned_cols=82 Identities=20% Similarity=0.191 Sum_probs=49.6
Q ss_pred CCCCCCeEEEeCCCccH---HHHHHHHhCCEEEEecc-hhhHHHHHHHHHHhhccccccCCCCCCCCCceEEEEeecCCC
Q 027530 61 SKLKGKRVIELGAGCGV---AGFGMALLGCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSGNLLGSIQAVELDWGNE 136 (222)
Q Consensus 61 ~~~~~~~vLelGcG~G~---~~i~la~~g~~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~v~~~~~d~~~~ 136 (222)
.+++|+++|=.|++.|+ ++..+++.|++|++++. .+-.+.+.+.+.... ...++.+..+|..+.
T Consensus 10 ~~l~gk~~lITGas~GIG~~~a~~La~~G~~Vil~~R~~~~~~~~~~~l~~~~------------~~~~v~~~~~Dl~d~ 77 (313)
T PRK05854 10 PDLSGKRAVVTGASDGLGLGLARRLAAAGAEVILPVRNRAKGEAAVAAIRTAV------------PDAKLSLRALDLSSL 77 (313)
T ss_pred cccCCCEEEEeCCCChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHHhC------------CCCceEEEEecCCCH
Confidence 35678999999988775 22344556899998886 333443433333221 123577888888765
Q ss_pred cccc-------ccCCCccEEEEecc
Q 027530 137 DHIK-------AVAPPFDYIIGTDV 154 (222)
Q Consensus 137 ~~~~-------~~~~~fD~Ii~~d~ 154 (222)
.... ...++.|++|.+--
T Consensus 78 ~sv~~~~~~~~~~~~~iD~li~nAG 102 (313)
T PRK05854 78 ASVAALGEQLRAEGRPIHLLINNAG 102 (313)
T ss_pred HHHHHHHHHHHHhCCCccEEEECCc
Confidence 4321 12356899887643
No 345
>PRK08293 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=86.40 E-value=8.9 Score=31.80 Aligned_cols=41 Identities=34% Similarity=0.405 Sum_probs=28.8
Q ss_pred CeEEEeCCCc-c-HHHHHHHHhCCEEEEecc-hhhHHHHHHHHH
Q 027530 66 KRVIELGAGC-G-VAGFGMALLGCNVITTDQ-IEVLPLLKRNVE 106 (222)
Q Consensus 66 ~~vLelGcG~-G-~~~i~la~~g~~v~~~D~-~~~l~~~~~n~~ 106 (222)
++|-=||+|. | .++..++..|.+|++.|. ++.++.++++++
T Consensus 4 ~kIaViGaG~mG~~iA~~la~~G~~V~l~d~~~~~l~~~~~~~~ 47 (287)
T PRK08293 4 KNVTVAGAGVLGSQIAFQTAFHGFDVTIYDISDEALEKAKERIA 47 (287)
T ss_pred cEEEEECCCHHHHHHHHHHHhcCCeEEEEeCCHHHHHHHHHHHH
Confidence 3577789886 3 244556667889999998 557777766553
No 346
>PF02558 ApbA: Ketopantoate reductase PanE/ApbA; InterPro: IPR013332 ApbA, the ketopantoate reductase enzyme 1.1.1.169 from EC of Salmonella typhimurium is required for the synthesis of thiamine via the alternative pyrimidine biosynthetic pathway []. Precursors to the pyrimidine moiety of thiamine are synthesized de novo by the purine biosynthetic pathway or the alternative pyrimidine biosynthetic (APB) pathway. The ApbA protein catalyzes the NADPH-specific reduction of ketopantoic acid to pantoic acid. This activity had previously been associated with the pantothenate biosynthetic gene panE []. ApbA and PanE are allelic [].; GO: 0008677 2-dehydropantoate 2-reductase activity, 0055114 oxidation-reduction process; PDB: 3EGO_B 3HWR_B 2QYT_A 1YJQ_A 1KS9_A 2OFP_A 1YON_A 3G17_E 3GHY_B 3I83_B ....
Probab=86.39 E-value=7 Score=28.74 Aligned_cols=100 Identities=23% Similarity=0.226 Sum_probs=54.0
Q ss_pred EEEeCCCc-c-HHHHHHHHhCCEEEEecchhhHHHHHHHHHHhhccccccCCCCCCCCCceEEEEeecCCCccccccCCC
Q 027530 68 VIELGAGC-G-VAGFGMALLGCNVITTDQIEVLPLLKRNVEWNTSRISQMNPGSGNLLGSIQAVELDWGNEDHIKAVAPP 145 (222)
Q Consensus 68 vLelGcG~-G-~~~i~la~~g~~v~~~D~~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~ 145 (222)
|+=+|+|. | +++..|++.|.+|++++.+.-++. +..+++.+..... ...+.....-+.. .....+
T Consensus 1 I~I~G~GaiG~~~a~~L~~~g~~V~l~~r~~~~~~----~~~~g~~~~~~~~-----~~~~~~~~~~~~~----~~~~~~ 67 (151)
T PF02558_consen 1 ILIIGAGAIGSLYAARLAQAGHDVTLVSRSPRLEA----IKEQGLTITGPDG-----DETVQPPIVISAP----SADAGP 67 (151)
T ss_dssp EEEESTSHHHHHHHHHHHHTTCEEEEEESHHHHHH----HHHHCEEEEETTE-----EEEEEEEEEESSH----GHHHST
T ss_pred CEEECcCHHHHHHHHHHHHCCCceEEEEccccHHh----hhheeEEEEeccc-----ceecccccccCcc----hhccCC
Confidence 34577775 3 345555566889999987542222 4444443211110 0111111111110 123578
Q ss_pred ccEEEEeccccCccCHHHHHHHHHHhcCCCeEEEEEEE
Q 027530 146 FDYIIGTDVVYAEHLLEPLLQTIFALSGPKTTILLGYE 183 (222)
Q Consensus 146 fD~Ii~~d~~y~~~~~~~ll~~~~~~l~~~g~~~l~~~ 183 (222)
||+||.+-= ....+..++.++..+.+++.+++...
T Consensus 68 ~D~viv~vK---a~~~~~~l~~l~~~~~~~t~iv~~qN 102 (151)
T PF02558_consen 68 YDLVIVAVK---AYQLEQALQSLKPYLDPNTTIVSLQN 102 (151)
T ss_dssp ESEEEE-SS---GGGHHHHHHHHCTGEETTEEEEEESS
T ss_pred CcEEEEEec---ccchHHHHHHHhhccCCCcEEEEEeC
Confidence 999987622 23567788889999999977766543
No 347
>PRK06935 2-deoxy-D-gluconate 3-dehydrogenase; Provisional
Probab=86.27 E-value=3.1 Score=33.55 Aligned_cols=79 Identities=19% Similarity=0.241 Sum_probs=46.8
Q ss_pred CCCCCeEEEeCCCccHHH---HHHHHhCCEEEEecchhhHHHHHHHHHHhhccccccCCCCCCCCCceEEEEeecCCCcc
Q 027530 62 KLKGKRVIELGAGCGVAG---FGMALLGCNVITTDQIEVLPLLKRNVEWNTSRISQMNPGSGNLLGSIQAVELDWGNEDH 138 (222)
Q Consensus 62 ~~~~~~vLelGcG~G~~~---i~la~~g~~v~~~D~~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~ 138 (222)
.+.+++||=.|++.|+-. ..+++.|++|+.++..+..+.+.+.+... ..++.+...|..+...
T Consensus 12 ~l~~k~vlItGas~gIG~~ia~~l~~~G~~v~~~~~~~~~~~~~~~~~~~--------------~~~~~~~~~D~~~~~~ 77 (258)
T PRK06935 12 SLDGKVAIVTGGNTGLGQGYAVALAKAGADIIITTHGTNWDETRRLIEKE--------------GRKVTFVQVDLTKPES 77 (258)
T ss_pred cCCCCEEEEeCCCchHHHHHHHHHHHCCCEEEEEeCCcHHHHHHHHHHhc--------------CCceEEEEcCCCCHHH
Confidence 467899999999877532 23456689988887643233333322221 1356777777776543
Q ss_pred cc-------ccCCCccEEEEecc
Q 027530 139 IK-------AVAPPFDYIIGTDV 154 (222)
Q Consensus 139 ~~-------~~~~~fD~Ii~~d~ 154 (222)
.. ..-+..|++|.+.-
T Consensus 78 i~~~~~~~~~~~g~id~li~~ag 100 (258)
T PRK06935 78 AEKVVKEALEEFGKIDILVNNAG 100 (258)
T ss_pred HHHHHHHHHHHcCCCCEEEECCC
Confidence 21 11246899887643
No 348
>KOG0725 consensus Reductases with broad range of substrate specificities [General function prediction only]
Probab=86.11 E-value=17 Score=30.04 Aligned_cols=85 Identities=19% Similarity=0.218 Sum_probs=56.5
Q ss_pred CCCCCCCeEEEeCCCccH---HHHHHHHhCCEEEEecc-hhhHHHHHHHHHHhhccccccCCCCCCCCCceEEEEeecCC
Q 027530 60 PSKLKGKRVIELGAGCGV---AGFGMALLGCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSGNLLGSIQAVELDWGN 135 (222)
Q Consensus 60 ~~~~~~~~vLelGcG~G~---~~i~la~~g~~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~v~~~~~d~~~ 135 (222)
+..+.|+.+|-=|...|+ .+..+++.|++|+.++. ++.++.++.-+...+. ...++.....|..+
T Consensus 3 ~~~l~gkvalVTG~s~GIG~aia~~la~~Ga~v~i~~r~~~~~~~~~~~~~~~~~-----------~~~~~~~~~~Dv~~ 71 (270)
T KOG0725|consen 3 GGRLAGKVALVTGGSSGIGKAIALLLAKAGAKVVITGRSEERLEETAQELGGLGY-----------TGGKVLAIVCDVSK 71 (270)
T ss_pred CccCCCcEEEEECCCChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCC-----------CCCeeEEEECcCCC
Confidence 356789999999999886 45677888999999997 5666666555544332 13456677767665
Q ss_pred Cccc--------cccCCCccEEEEeccc
Q 027530 136 EDHI--------KAVAPPFDYIIGTDVV 155 (222)
Q Consensus 136 ~~~~--------~~~~~~fD~Ii~~d~~ 155 (222)
.++. ....++.|+++.+.-.
T Consensus 72 ~~~~~~l~~~~~~~~~GkidiLvnnag~ 99 (270)
T KOG0725|consen 72 EVDVEKLVEFAVEKFFGKIDILVNNAGA 99 (270)
T ss_pred HHHHHHHHHHHHHHhCCCCCEEEEcCCc
Confidence 4321 1124689998876443
No 349
>PF00107 ADH_zinc_N: Zinc-binding dehydrogenase; InterPro: IPR013149 Alcohol dehydrogenase (1.1.1.1 from EC) (ADH) catalyzes the reversible oxidation of alcohols to their corresponding acetaldehyde or ketone with the concomitant reduction of NAD: alcohol + NAD = aldehyde or ketone + NADH Currently three structurally and catalytically different types of alcohol dehydrogenases are known: Zinc-containing 'long-chain' alcohol dehydrogenases. Insect-type, or 'short-chain' alcohol dehydrogenases. Iron-containing alcohol dehydrogenases. Zinc-containing ADH's [, ] are dimeric or tetrameric enzymes that bind two atoms of zinc per subunit. One of the zinc atom is essential for catalytic activity while the other is not. Both zinc atoms are coordinated by either cysteine or histidine residues; the catalytic zinc is coordinated by two cysteines and one histidine. Zinc-containing ADH's are found in bacteria, mammals, plants, and in fungi. In many species there is more than one isozyme (for example, humans have at least six isozymes, yeast have three, etc.). A number of other zinc-dependent dehydrogenases are closely related to zinc ADH [] and are included in this family. Sorbitol dehydrogenase (1.1.1.14 from EC) L-threonine 3-dehydrogenase (1.1.1.103 from EC) Glutathione-dependent formaldehyde dehydrogenase (1.1.1.284 from EC) Mannitol dehydrogenase (1.1.1.255 from EC) In addition, this family includes NADP-dependent quinone oxidoreductase (1.6.5.5 from EC), an enzyme found in bacteria (gene qor), in yeast and in mammals where, in some species such as rodents, it has been recruited as an eye lens protein and is known as zeta-crystallin []. The sequence of quinone oxidoreductase is distantly related to that other zinc-containing alcohol dehydrogenases and it lacks the zinc-ligand residues. The torpedo fish and mammalian synaptic vesicle membrane protein vat-1 is related to qor. This entry represents the cofactor-binding domain of these enzymes, which is normally found towards the C terminus. Structural studies indicate that it forms a classical Rossman fold that reversibly binds NAD(H) [, , ].; GO: 0008270 zinc ion binding, 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 3PI7_A 3COS_D 1VJ1_A 2ZB3_A 1PIW_B 1Q1N_A 1PS0_A 2EER_B 3KRT_A 1ZSY_A ....
Probab=86.10 E-value=0.3 Score=35.10 Aligned_cols=83 Identities=27% Similarity=0.324 Sum_probs=50.9
Q ss_pred CccHHHHHHHH-hCCEEEEecch-hhHHHHHHHHHHhhccccccCCCCCCCCCceEEEEeecCCCcc---c-c-ccCCCc
Q 027530 74 GCGVAGFGMAL-LGCNVITTDQI-EVLPLLKRNVEWNTSRISQMNPGSGNLLGSIQAVELDWGNEDH---I-K-AVAPPF 146 (222)
Q Consensus 74 G~G~~~i~la~-~g~~v~~~D~~-~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~---~-~-~~~~~f 146 (222)
|.|+.++.+|+ .|++|+++|.+ +-++.+++ .+.. ..++..+.+. . . .....+
T Consensus 1 ~vG~~a~q~ak~~G~~vi~~~~~~~k~~~~~~----~Ga~-----------------~~~~~~~~~~~~~i~~~~~~~~~ 59 (130)
T PF00107_consen 1 GVGLMAIQLAKAMGAKVIATDRSEEKLELAKE----LGAD-----------------HVIDYSDDDFVEQIRELTGGRGV 59 (130)
T ss_dssp HHHHHHHHHHHHTTSEEEEEESSHHHHHHHHH----TTES-----------------EEEETTTSSHHHHHHHHTTTSSE
T ss_pred ChHHHHHHHHHHcCCEEEEEECCHHHHHHHHh----hccc-----------------ccccccccccccccccccccccc
Confidence 46888887776 48899999984 45555543 2211 1123333211 1 1 112479
Q ss_pred cEEEEeccccCccCHHHHHHHHHHhcCCCeEEEEEEE
Q 027530 147 DYIIGTDVVYAEHLLEPLLQTIFALSGPKTTILLGYE 183 (222)
Q Consensus 147 D~Ii~~d~~y~~~~~~~ll~~~~~~l~~~g~~~l~~~ 183 (222)
|+|+=+-. ....++....+++++|++.+...
T Consensus 60 d~vid~~g------~~~~~~~~~~~l~~~G~~v~vg~ 90 (130)
T PF00107_consen 60 DVVIDCVG------SGDTLQEAIKLLRPGGRIVVVGV 90 (130)
T ss_dssp EEEEESSS------SHHHHHHHHHHEEEEEEEEEESS
T ss_pred eEEEEecC------cHHHHHHHHHHhccCCEEEEEEc
Confidence 99984422 25688888899999999887643
No 350
>PF04378 RsmJ: Ribosomal RNA small subunit methyltransferase D, RsmJ; InterPro: IPR007473 This is a bacterial protein of unknown function, possibly secreted.; PDB: 2OO3_A.
Probab=86.07 E-value=2.2 Score=34.77 Aligned_cols=115 Identities=9% Similarity=0.066 Sum_probs=63.5
Q ss_pred EEeCCCccHHHHHHHHhCCEEEEecc-hhhHHHHHHHHHHhhccccccCCCCCCCCCceEEEEeecCCC-ccccccCCCc
Q 027530 69 IELGAGCGVAGFGMALLGCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSGNLLGSIQAVELDWGNE-DHIKAVAPPF 146 (222)
Q Consensus 69 LelGcG~G~~~i~la~~g~~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~v~~~~~d~~~~-~~~~~~~~~f 146 (222)
|..=.|+-.++..+.+..-+.++.|+ ++-.+.+++|+... .++.+...|=-.. ....++..+=
T Consensus 62 l~~YPGSP~ia~~llR~qDrl~l~ELHp~d~~~L~~~~~~~---------------~~v~v~~~DG~~~l~allPP~~rR 126 (245)
T PF04378_consen 62 LRFYPGSPAIAARLLREQDRLVLFELHPQDFEALKKNFRRD---------------RRVRVHHRDGYEGLKALLPPPERR 126 (245)
T ss_dssp --EEE-HHHHHHHHS-TTSEEEEE--SHHHHHHHTTS--TT---------------S-EEEE-S-HHHHHHHH-S-TTS-
T ss_pred cCcCCCCHHHHHHhCCccceEEEEecCchHHHHHHHHhccC---------------CccEEEeCchhhhhhhhCCCCCCC
Confidence 44444444444444455568999998 77788888877632 3677776321100 0111223344
Q ss_pred cEEEEeccccCccCHHHHHHHHHHhcC--CCeEEEEEEEEcChhHHHHHHHHHh
Q 027530 147 DYIIGTDVVYAEHLLEPLLQTIFALSG--PKTTILLGYEIRSTSVHEQMLQMWK 198 (222)
Q Consensus 147 D~Ii~~d~~y~~~~~~~ll~~~~~~l~--~~g~~~l~~~~r~~~~~~~f~~~~~ 198 (222)
-+|+.-+++........+++++.+.++ +.|++.+=++.......+.|.+.++
T Consensus 127 glVLIDPpYE~~~dy~~v~~~l~~a~kR~~~G~~~iWYPi~~~~~~~~~~~~l~ 180 (245)
T PF04378_consen 127 GLVLIDPPYEQKDDYQRVVDALAKALKRWPTGVYAIWYPIKDRERVDRFLRALK 180 (245)
T ss_dssp EEEEE-----STTHHHHHHHHHHHHHHH-TTSEEEEEEEESSHHHHHHHHHHHH
T ss_pred eEEEECCCCCCchHHHHHHHHHHHHHHhcCCcEEEEEeecccHHHHHHHHHHHH
Confidence 466655556567788899999998887 8899888888877766778887775
No 351
>PRK12826 3-ketoacyl-(acyl-carrier-protein) reductase; Reviewed
Probab=85.91 E-value=3.3 Score=32.95 Aligned_cols=79 Identities=23% Similarity=0.261 Sum_probs=46.6
Q ss_pred CCCCeEEEeCCCccHHHHHH----HHhCCEEEEecc-hhhHHHHHHHHHHhhccccccCCCCCCCCCceEEEEeecCCCc
Q 027530 63 LKGKRVIELGAGCGVAGFGM----ALLGCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSGNLLGSIQAVELDWGNED 137 (222)
Q Consensus 63 ~~~~~vLelGcG~G~~~i~l----a~~g~~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~v~~~~~d~~~~~ 137 (222)
..+++||=.|++ |.+|..+ ++.|++|++++. .+.+......+...+ .++.+...|+.+..
T Consensus 4 ~~~~~ilItGas-g~iG~~l~~~l~~~g~~V~~~~r~~~~~~~~~~~l~~~~--------------~~~~~~~~Dl~~~~ 68 (251)
T PRK12826 4 LEGRVALVTGAA-RGIGRAIAVRLAADGAEVIVVDICGDDAAATAELVEAAG--------------GKARARQVDVRDRA 68 (251)
T ss_pred CCCCEEEEcCCC-CcHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcC--------------CeEEEEECCCCCHH
Confidence 467889988875 4445444 455889999986 343333333333221 34677888887654
Q ss_pred cccc-------cCCCccEEEEecccc
Q 027530 138 HIKA-------VAPPFDYIIGTDVVY 156 (222)
Q Consensus 138 ~~~~-------~~~~fD~Ii~~d~~y 156 (222)
.... .-+++|+|+.+...+
T Consensus 69 ~~~~~~~~~~~~~~~~d~vi~~ag~~ 94 (251)
T PRK12826 69 ALKAAVAAGVEDFGRLDILVANAGIF 94 (251)
T ss_pred HHHHHHHHHHHHhCCCCEEEECCCCC
Confidence 3211 113689988775443
No 352
>PRK08862 short chain dehydrogenase; Provisional
Probab=85.82 E-value=4.4 Score=32.28 Aligned_cols=77 Identities=18% Similarity=0.157 Sum_probs=47.6
Q ss_pred CCCCeEEEeCCCccH---HHHHHHHhCCEEEEecc-hhhHHHHHHHHHHhhccccccCCCCCCCCCceEEEEeecCCCcc
Q 027530 63 LKGKRVIELGAGCGV---AGFGMALLGCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSGNLLGSIQAVELDWGNEDH 138 (222)
Q Consensus 63 ~~~~~vLelGcG~G~---~~i~la~~g~~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~ 138 (222)
++++++|=.|++.|+ ++..+++.|++|+.++. .+.++.+.+.+...+ ..+.....|..+.+.
T Consensus 3 ~~~k~~lVtGas~GIG~aia~~la~~G~~V~~~~r~~~~l~~~~~~i~~~~--------------~~~~~~~~D~~~~~~ 68 (227)
T PRK08862 3 IKSSIILITSAGSVLGRTISCHFARLGATLILCDQDQSALKDTYEQCSALT--------------DNVYSFQLKDFSQES 68 (227)
T ss_pred CCCeEEEEECCccHHHHHHHHHHHHCCCEEEEEcCCHHHHHHHHHHHHhcC--------------CCeEEEEccCCCHHH
Confidence 467899999999986 44456667999999987 445555444444322 234455556555433
Q ss_pred cc-------ccCC-CccEEEEec
Q 027530 139 IK-------AVAP-PFDYIIGTD 153 (222)
Q Consensus 139 ~~-------~~~~-~fD~Ii~~d 153 (222)
.. ..-+ ..|++|.+-
T Consensus 69 ~~~~~~~~~~~~g~~iD~li~na 91 (227)
T PRK08862 69 IRHLFDAIEQQFNRAPDVLVNNW 91 (227)
T ss_pred HHHHHHHHHHHhCCCCCEEEECC
Confidence 21 0113 789988764
No 353
>PRK08324 short chain dehydrogenase; Validated
Probab=85.75 E-value=7.2 Score=36.69 Aligned_cols=79 Identities=19% Similarity=0.201 Sum_probs=45.5
Q ss_pred CCCCCeEEEeCCCccH---HHHHHHHhCCEEEEecc-hhhHHHHHHHHHHhhccccccCCCCCCCCCceEEEEeecCCCc
Q 027530 62 KLKGKRVIELGAGCGV---AGFGMALLGCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSGNLLGSIQAVELDWGNED 137 (222)
Q Consensus 62 ~~~~~~vLelGcG~G~---~~i~la~~g~~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~v~~~~~d~~~~~ 137 (222)
.++|++||=.|++.|+ +...+++.|++|+++|. ++.++.+...+... ..+.+...|..+..
T Consensus 419 ~l~gk~vLVTGasggIG~~la~~L~~~Ga~Vvl~~r~~~~~~~~~~~l~~~---------------~~v~~v~~Dvtd~~ 483 (681)
T PRK08324 419 PLAGKVALVTGAAGGIGKATAKRLAAEGACVVLADLDEEAAEAAAAELGGP---------------DRALGVACDVTDEA 483 (681)
T ss_pred CCCCCEEEEecCCCHHHHHHHHHHHHCcCEEEEEeCCHHHHHHHHHHHhcc---------------CcEEEEEecCCCHH
Confidence 3567899999975443 22234456889999997 44444333322210 25667777776554
Q ss_pred ccc-------ccCCCccEEEEeccc
Q 027530 138 HIK-------AVAPPFDYIIGTDVV 155 (222)
Q Consensus 138 ~~~-------~~~~~fD~Ii~~d~~ 155 (222)
... ...+.+|+||.+--+
T Consensus 484 ~v~~~~~~~~~~~g~iDvvI~~AG~ 508 (681)
T PRK08324 484 AVQAAFEEAALAFGGVDIVVSNAGI 508 (681)
T ss_pred HHHHHHHHHHHHcCCCCEEEECCCC
Confidence 321 112468999876543
No 354
>PF02636 Methyltransf_28: Putative S-adenosyl-L-methionine-dependent methyltransferase; InterPro: IPR003788 This entry describes proteins of unknown function.; PDB: 4F3N_A 1ZKD_B.
Probab=85.73 E-value=3 Score=33.99 Aligned_cols=40 Identities=20% Similarity=0.215 Sum_probs=26.3
Q ss_pred CeEEEeCCCccHHHHHHHHh----------CCEEEEecchhhHHHH-HHHH
Q 027530 66 KRVIELGAGCGVAGFGMALL----------GCNVITTDQIEVLPLL-KRNV 105 (222)
Q Consensus 66 ~~vLelGcG~G~~~i~la~~----------g~~v~~~D~~~~l~~~-~~n~ 105 (222)
-+|+|+|+|.|.++.-+... ..+++.+|.+..+... ++.+
T Consensus 20 ~~ivE~GaG~G~La~diL~~l~~~~p~~~~~~~y~ivE~Sp~L~~~Q~~~L 70 (252)
T PF02636_consen 20 LRIVEIGAGRGTLARDILRYLRKFSPEVYKRLRYHIVEISPYLRERQKERL 70 (252)
T ss_dssp EEEEEES-TTSHHHHHHHHHHCCTTHHHHTTCEEEEE-TTCCCHHHHHHHC
T ss_pred cEEEEECCCchHHHHHHHHHHHHhChhhhhcceEEEEcCCHHHHHHHHHHh
Confidence 58999999999988766542 1369999986544444 4443
No 355
>PRK05866 short chain dehydrogenase; Provisional
Probab=85.57 E-value=3.4 Score=34.35 Aligned_cols=79 Identities=23% Similarity=0.330 Sum_probs=47.0
Q ss_pred CCCCCeEEEeCCCccHHH---HHHHHhCCEEEEecc-hhhHHHHHHHHHHhhccccccCCCCCCCCCceEEEEeecCCCc
Q 027530 62 KLKGKRVIELGAGCGVAG---FGMALLGCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSGNLLGSIQAVELDWGNED 137 (222)
Q Consensus 62 ~~~~~~vLelGcG~G~~~---i~la~~g~~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~v~~~~~d~~~~~ 137 (222)
.+.++++|=.|++.|+-. ..+++.|++|++++. .+.++.+.+.+...+ ..+.+...|..+..
T Consensus 37 ~~~~k~vlItGasggIG~~la~~La~~G~~Vi~~~R~~~~l~~~~~~l~~~~--------------~~~~~~~~Dl~d~~ 102 (293)
T PRK05866 37 DLTGKRILLTGASSGIGEAAAEQFARRGATVVAVARREDLLDAVADRITRAG--------------GDAMAVPCDLSDLD 102 (293)
T ss_pred CCCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhcC--------------CcEEEEEccCCCHH
Confidence 356789999998766522 234456889999997 444444444433211 24566777776654
Q ss_pred ccc-------ccCCCccEEEEecc
Q 027530 138 HIK-------AVAPPFDYIIGTDV 154 (222)
Q Consensus 138 ~~~-------~~~~~fD~Ii~~d~ 154 (222)
... ..-+..|++|.+--
T Consensus 103 ~v~~~~~~~~~~~g~id~li~~AG 126 (293)
T PRK05866 103 AVDALVADVEKRIGGVDILINNAG 126 (293)
T ss_pred HHHHHHHHHHHHcCCCCEEEECCC
Confidence 321 11247899987643
No 356
>PLN02586 probable cinnamyl alcohol dehydrogenase
Probab=85.47 E-value=8.2 Score=33.07 Aligned_cols=32 Identities=22% Similarity=0.284 Sum_probs=23.6
Q ss_pred CCCCeEEEeCCCc-cHHHHHHHH-hCCEEEEecc
Q 027530 63 LKGKRVIELGAGC-GVAGFGMAL-LGCNVITTDQ 94 (222)
Q Consensus 63 ~~~~~vLelGcG~-G~~~i~la~-~g~~v~~~D~ 94 (222)
.+|.+||=.|+|. |+..+.+|+ +|++|++++.
T Consensus 182 ~~g~~VlV~G~G~vG~~avq~Ak~~Ga~vi~~~~ 215 (360)
T PLN02586 182 EPGKHLGVAGLGGLGHVAVKIGKAFGLKVTVISS 215 (360)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEeC
Confidence 3678888899875 766666665 4888888875
No 357
>PRK08213 gluconate 5-dehydrogenase; Provisional
Probab=85.38 E-value=5.8 Score=31.92 Aligned_cols=79 Identities=19% Similarity=0.188 Sum_probs=47.7
Q ss_pred CCCCCeEEEeCCCccHHHHHHH----HhCCEEEEecc-hhhHHHHHHHHHHhhccccccCCCCCCCCCceEEEEeecCCC
Q 027530 62 KLKGKRVIELGAGCGVAGFGMA----LLGCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSGNLLGSIQAVELDWGNE 136 (222)
Q Consensus 62 ~~~~~~vLelGcG~G~~~i~la----~~g~~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~v~~~~~d~~~~ 136 (222)
.++++++|=.|+. |.+|..++ +.|++|+.++. .+-++.+...+...+ .++.+...|..+.
T Consensus 9 ~~~~k~ilItGa~-g~IG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~i~~~~--------------~~~~~~~~Dl~d~ 73 (259)
T PRK08213 9 DLSGKTALVTGGS-RGLGLQIAEALGEAGARVVLSARKAEELEEAAAHLEALG--------------IDALWIAADVADE 73 (259)
T ss_pred CcCCCEEEEECCC-chHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHhcC--------------CeEEEEEccCCCH
Confidence 4578899999954 44455544 45889999987 344444444333221 3566778787765
Q ss_pred cccc-------ccCCCccEEEEeccc
Q 027530 137 DHIK-------AVAPPFDYIIGTDVV 155 (222)
Q Consensus 137 ~~~~-------~~~~~fD~Ii~~d~~ 155 (222)
+... ...++.|.||.+...
T Consensus 74 ~~i~~~~~~~~~~~~~id~vi~~ag~ 99 (259)
T PRK08213 74 ADIERLAEETLERFGHVDILVNNAGA 99 (259)
T ss_pred HHHHHHHHHHHHHhCCCCEEEECCCC
Confidence 4331 112468998877543
No 358
>PRK07097 gluconate 5-dehydrogenase; Provisional
Probab=85.35 E-value=4.3 Score=32.87 Aligned_cols=81 Identities=19% Similarity=0.166 Sum_probs=50.5
Q ss_pred CCCCCCeEEEeCCCccHH---HHHHHHhCCEEEEecc-hhhHHHHHHHHHHhhccccccCCCCCCCCCceEEEEeecCCC
Q 027530 61 SKLKGKRVIELGAGCGVA---GFGMALLGCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSGNLLGSIQAVELDWGNE 136 (222)
Q Consensus 61 ~~~~~~~vLelGcG~G~~---~i~la~~g~~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~v~~~~~d~~~~ 136 (222)
..++++++|=.|++.|+- ...++..|++|+.++. ++.++.+..++...+ .++.+...|..+.
T Consensus 6 ~~~~~k~~lItGa~~~iG~~ia~~l~~~G~~vv~~~~~~~~~~~~~~~~~~~~--------------~~~~~~~~Dl~~~ 71 (265)
T PRK07097 6 FSLKGKIALITGASYGIGFAIAKAYAKAGATIVFNDINQELVDKGLAAYRELG--------------IEAHGYVCDVTDE 71 (265)
T ss_pred cCCCCCEEEEeCCCchHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHHHhcC--------------CceEEEEcCCCCH
Confidence 345788999999987653 2334566899998886 444454444444222 3567777777765
Q ss_pred cccc-------ccCCCccEEEEeccc
Q 027530 137 DHIK-------AVAPPFDYIIGTDVV 155 (222)
Q Consensus 137 ~~~~-------~~~~~fD~Ii~~d~~ 155 (222)
.... ..-++.|++|.+--+
T Consensus 72 ~~~~~~~~~~~~~~~~id~li~~ag~ 97 (265)
T PRK07097 72 DGVQAMVSQIEKEVGVIDILVNNAGI 97 (265)
T ss_pred HHHHHHHHHHHHhCCCCCEEEECCCC
Confidence 4321 112468999876544
No 359
>PRK05876 short chain dehydrogenase; Provisional
Probab=85.32 E-value=4.7 Score=33.06 Aligned_cols=78 Identities=15% Similarity=0.210 Sum_probs=47.0
Q ss_pred CCCCeEEEeCCCccHH---HHHHHHhCCEEEEecc-hhhHHHHHHHHHHhhccccccCCCCCCCCCceEEEEeecCCCcc
Q 027530 63 LKGKRVIELGAGCGVA---GFGMALLGCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSGNLLGSIQAVELDWGNEDH 138 (222)
Q Consensus 63 ~~~~~vLelGcG~G~~---~i~la~~g~~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~ 138 (222)
++++++|=.|++.|+- +..+++.|++|+++|. .+.++.+.+.+...+ .++.+...|..+...
T Consensus 4 ~~~k~vlVTGas~gIG~ala~~La~~G~~Vv~~~r~~~~l~~~~~~l~~~~--------------~~~~~~~~Dv~d~~~ 69 (275)
T PRK05876 4 FPGRGAVITGGASGIGLATGTEFARRGARVVLGDVDKPGLRQAVNHLRAEG--------------FDVHGVMCDVRHREE 69 (275)
T ss_pred cCCCEEEEeCCCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcC--------------CeEEEEeCCCCCHHH
Confidence 5788999999887652 2334556899999987 334444333333221 246667777776543
Q ss_pred cc-------ccCCCccEEEEecc
Q 027530 139 IK-------AVAPPFDYIIGTDV 154 (222)
Q Consensus 139 ~~-------~~~~~fD~Ii~~d~ 154 (222)
.. ..-++.|++|.+--
T Consensus 70 v~~~~~~~~~~~g~id~li~nAg 92 (275)
T PRK05876 70 VTHLADEAFRLLGHVDVVFSNAG 92 (275)
T ss_pred HHHHHHHHHHHcCCCCEEEECCC
Confidence 21 11246899887654
No 360
>PRK06249 2-dehydropantoate 2-reductase; Provisional
Probab=85.30 E-value=11 Score=31.58 Aligned_cols=99 Identities=20% Similarity=0.213 Sum_probs=55.7
Q ss_pred CeEEEeCCCc--cHHHHHHHHhCCEEEEecchhhHHHHHHHHHHhhccccccCCCCCCCCCceEEEEeecCCCccccccC
Q 027530 66 KRVIELGAGC--GVAGFGMALLGCNVITTDQIEVLPLLKRNVEWNTSRISQMNPGSGNLLGSIQAVELDWGNEDHIKAVA 143 (222)
Q Consensus 66 ~~vLelGcG~--G~~~i~la~~g~~v~~~D~~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~ 143 (222)
.+|+=+|+|. |+++..+++.|.+|+++.... .+ .+..+++..... .....+........ ....
T Consensus 6 m~I~IiG~GaiG~~lA~~L~~~g~~V~~~~r~~-~~----~~~~~g~~~~~~-------~~~~~~~~~~~~~~---~~~~ 70 (313)
T PRK06249 6 PRIGIIGTGAIGGFYGAMLARAGFDVHFLLRSD-YE----AVRENGLQVDSV-------HGDFHLPPVQAYRS---AEDM 70 (313)
T ss_pred cEEEEECCCHHHHHHHHHHHHCCCeEEEEEeCC-HH----HHHhCCeEEEeC-------CCCeeecCceEEcc---hhhc
Confidence 5799999996 567778888899999887643 12 234444322110 01111111111111 0123
Q ss_pred CCccEEEEeccccCccCHHHHHHHHHHhcCCCeEEEEEE
Q 027530 144 PPFDYIIGTDVVYAEHLLEPLLQTIFALSGPKTTILLGY 182 (222)
Q Consensus 144 ~~fD~Ii~~d~~y~~~~~~~ll~~~~~~l~~~g~~~l~~ 182 (222)
..||+||.+-..|. ...+++.+..++++++.++...
T Consensus 71 ~~~D~vilavK~~~---~~~~~~~l~~~~~~~~~iv~lq 106 (313)
T PRK06249 71 PPCDWVLVGLKTTA---NALLAPLIPQVAAPDAKVLLLQ 106 (313)
T ss_pred CCCCEEEEEecCCC---hHhHHHHHhhhcCCCCEEEEec
Confidence 57999987744432 3567788888888888765543
No 361
>PF05206 TRM13: Methyltransferase TRM13; InterPro: IPR007871 This entry consists of eukaryotic and bacterial proteins that specifically methylates guanosine-4 in various tRNAs with a Gly(CCG), His or Pro signatures []. The alignment contains some conserved cysteines and histidines that might form a zinc binding site.; GO: 0008168 methyltransferase activity, 0008033 tRNA processing
Probab=85.23 E-value=2.2 Score=35.08 Aligned_cols=31 Identities=23% Similarity=0.228 Sum_probs=25.5
Q ss_pred CCCeEEEeCCCccHHHHHHHHhC-------CEEEEecc
Q 027530 64 KGKRVIELGAGCGVAGFGMALLG-------CNVITTDQ 94 (222)
Q Consensus 64 ~~~~vLelGcG~G~~~i~la~~g-------~~v~~~D~ 94 (222)
++..++|+|||.|.++..+++.- ..++++|.
T Consensus 18 ~~~~~vEfGaGrg~LS~~v~~~~~~~~~~~~~~~lIDR 55 (259)
T PF05206_consen 18 PDSCFVEFGAGRGELSRWVAQALQEDKPSNSRFVLIDR 55 (259)
T ss_pred CCCEEEEECCCchHHHHHHHHHhhhcccCCccEEEEec
Confidence 45689999999999998888653 36899996
No 362
>PRK06125 short chain dehydrogenase; Provisional
Probab=85.20 E-value=6.4 Score=31.69 Aligned_cols=80 Identities=23% Similarity=0.304 Sum_probs=47.8
Q ss_pred CCCCeEEEeCCCccHH---HHHHHHhCCEEEEecc-hhhHHHHHHHHHHhhccccccCCCCCCCCCceEEEEeecCCCcc
Q 027530 63 LKGKRVIELGAGCGVA---GFGMALLGCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSGNLLGSIQAVELDWGNEDH 138 (222)
Q Consensus 63 ~~~~~vLelGcG~G~~---~i~la~~g~~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~ 138 (222)
++++++|=.|++.|+- ...+++.|++|++++. ++.++.+.+.+.... ..++.+...|+.+...
T Consensus 5 ~~~k~vlItG~~~giG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~l~~~~-------------~~~~~~~~~D~~~~~~ 71 (259)
T PRK06125 5 LAGKRVLITGASKGIGAAAAEAFAAEGCHLHLVARDADALEALAADLRAAH-------------GVDVAVHALDLSSPEA 71 (259)
T ss_pred CCCCEEEEeCCCchHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHhhc-------------CCceEEEEecCCCHHH
Confidence 4678999999876642 2334566899999997 444444444443221 1356677777765443
Q ss_pred cc---ccCCCccEEEEeccc
Q 027530 139 IK---AVAPPFDYIIGTDVV 155 (222)
Q Consensus 139 ~~---~~~~~fD~Ii~~d~~ 155 (222)
.. ..-++.|++|.+.-.
T Consensus 72 ~~~~~~~~g~id~lv~~ag~ 91 (259)
T PRK06125 72 REQLAAEAGDIDILVNNAGA 91 (259)
T ss_pred HHHHHHHhCCCCEEEECCCC
Confidence 21 112578998876443
No 363
>PRK07063 short chain dehydrogenase; Provisional
Probab=85.11 E-value=3.7 Score=33.09 Aligned_cols=80 Identities=20% Similarity=0.230 Sum_probs=48.6
Q ss_pred CCCCeEEEeCCCccH---HHHHHHHhCCEEEEecc-hhhHHHHHHHHHHhhccccccCCCCCCCCCceEEEEeecCCCcc
Q 027530 63 LKGKRVIELGAGCGV---AGFGMALLGCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSGNLLGSIQAVELDWGNEDH 138 (222)
Q Consensus 63 ~~~~~vLelGcG~G~---~~i~la~~g~~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~ 138 (222)
+.++++|=.|++.|+ ++..+++.|++|++++. ++.++.+.+.+.... ...++.+...|..+...
T Consensus 5 l~~k~vlVtGas~gIG~~~a~~l~~~G~~vv~~~r~~~~~~~~~~~~~~~~------------~~~~~~~~~~Dl~~~~~ 72 (260)
T PRK07063 5 LAGKVALVTGAAQGIGAAIARAFAREGAAVALADLDAALAERAAAAIARDV------------AGARVLAVPADVTDAAS 72 (260)
T ss_pred cCCCEEEEECCCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcc------------CCceEEEEEccCCCHHH
Confidence 567899999987664 22345556899999997 444554444443211 12356777777776543
Q ss_pred ccc-------cCCCccEEEEecc
Q 027530 139 IKA-------VAPPFDYIIGTDV 154 (222)
Q Consensus 139 ~~~-------~~~~fD~Ii~~d~ 154 (222)
... .-+..|++|.+--
T Consensus 73 ~~~~~~~~~~~~g~id~li~~ag 95 (260)
T PRK07063 73 VAAAVAAAEEAFGPLDVLVNNAG 95 (260)
T ss_pred HHHHHHHHHHHhCCCcEEEECCC
Confidence 211 1247899887643
No 364
>COG0686 Ald Alanine dehydrogenase [Amino acid transport and metabolism]
Probab=85.04 E-value=4.6 Score=34.20 Aligned_cols=96 Identities=20% Similarity=0.295 Sum_probs=59.7
Q ss_pred CCCeEEEeCCCc-cHHHHHHH-HhCCEEEEecch-hhHHHHHHHHHHhhccccccCCCCCCCCCceEEEEeecCCCcccc
Q 027530 64 KGKRVIELGAGC-GVAGFGMA-LLGCNVITTDQI-EVLPLLKRNVEWNTSRISQMNPGSGNLLGSIQAVELDWGNEDHIK 140 (222)
Q Consensus 64 ~~~~vLelGcG~-G~~~i~la-~~g~~v~~~D~~-~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~ 140 (222)
...+|.=||-|. |..+.-.| -+|++|+..|.+ +-++++..-.. .++.... .+...+.
T Consensus 167 ~~~kv~iiGGGvvgtnaAkiA~glgA~Vtild~n~~rl~~ldd~f~-----------------~rv~~~~---st~~~ie 226 (371)
T COG0686 167 LPAKVVVLGGGVVGTNAAKIAIGLGADVTILDLNIDRLRQLDDLFG-----------------GRVHTLY---STPSNIE 226 (371)
T ss_pred CCccEEEECCccccchHHHHHhccCCeeEEEecCHHHHhhhhHhhC-----------------ceeEEEE---cCHHHHH
Confidence 334677888886 66554433 468999999984 44544443221 2444443 2223333
Q ss_pred ccCCCccEEEEeccccCccCHHHHHHHHHHhcCCCeEEE
Q 027530 141 AVAPPFDYIIGTDVVYAEHLLEPLLQTIFALSGPKTTIL 179 (222)
Q Consensus 141 ~~~~~fD~Ii~~d~~y~~~~~~~ll~~~~~~l~~~g~~~ 179 (222)
..-.+.|++|+.=.+--.....-..+...+.++||+.++
T Consensus 227 e~v~~aDlvIgaVLIpgakaPkLvt~e~vk~MkpGsViv 265 (371)
T COG0686 227 EAVKKADLVIGAVLIPGAKAPKLVTREMVKQMKPGSVIV 265 (371)
T ss_pred HHhhhccEEEEEEEecCCCCceehhHHHHHhcCCCcEEE
Confidence 335689999988666545555556777778889988765
No 365
>PRK06949 short chain dehydrogenase; Provisional
Probab=85.04 E-value=4.7 Score=32.31 Aligned_cols=80 Identities=29% Similarity=0.415 Sum_probs=47.1
Q ss_pred CCCCCCeEEEeCCCccHHHHH----HHHhCCEEEEecc-hhhHHHHHHHHHHhhccccccCCCCCCCCCceEEEEeecCC
Q 027530 61 SKLKGKRVIELGAGCGVAGFG----MALLGCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSGNLLGSIQAVELDWGN 135 (222)
Q Consensus 61 ~~~~~~~vLelGcG~G~~~i~----la~~g~~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~v~~~~~d~~~ 135 (222)
..+++++||=.|++.| +|.. +++.|++|++++. ++.++.+...+.... .++.+...|..+
T Consensus 5 ~~~~~k~ilItGasg~-IG~~~a~~l~~~G~~Vi~~~r~~~~~~~~~~~l~~~~--------------~~~~~~~~D~~~ 69 (258)
T PRK06949 5 INLEGKVALVTGASSG-LGARFAQVLAQAGAKVVLASRRVERLKELRAEIEAEG--------------GAAHVVSLDVTD 69 (258)
T ss_pred cCCCCCEEEEECCCcH-HHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcC--------------CcEEEEEecCCC
Confidence 3467899999996544 3433 3345889999987 444444444433211 246677777765
Q ss_pred Ccccc-------ccCCCccEEEEeccc
Q 027530 136 EDHIK-------AVAPPFDYIIGTDVV 155 (222)
Q Consensus 136 ~~~~~-------~~~~~fD~Ii~~d~~ 155 (222)
.+... ...++.|+||.+.-.
T Consensus 70 ~~~~~~~~~~~~~~~~~~d~li~~ag~ 96 (258)
T PRK06949 70 YQSIKAAVAHAETEAGTIDILVNNSGV 96 (258)
T ss_pred HHHHHHHHHHHHHhcCCCCEEEECCCC
Confidence 43221 112468998876543
No 366
>cd05188 MDR Medium chain reductase/dehydrogenase (MDR)/zinc-dependent alcohol dehydrogenase-like family. The medium chain reductase/dehydrogenases (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH) , quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydro
Probab=85.03 E-value=7.9 Score=30.87 Aligned_cols=94 Identities=28% Similarity=0.274 Sum_probs=52.7
Q ss_pred CCCCeEEEeCCCc-cHHHHHHHH-hCCEEEEecc-hhhHHHHHHHHHHhhccccccCCCCCCCCCceEEEEeecCCCccc
Q 027530 63 LKGKRVIELGAGC-GVAGFGMAL-LGCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSGNLLGSIQAVELDWGNEDHI 139 (222)
Q Consensus 63 ~~~~~vLelGcG~-G~~~i~la~-~g~~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~ 139 (222)
.++.+||-.|+|. |...+.+++ .|.+|++++. ++..+.+++ .+.. .+ ++..+....
T Consensus 133 ~~~~~vli~g~~~~G~~~~~~a~~~g~~v~~~~~~~~~~~~~~~----~g~~---------------~~--~~~~~~~~~ 191 (271)
T cd05188 133 KPGDTVLVLGAGGVGLLAAQLAKAAGARVIVTDRSDEKLELAKE----LGAD---------------HV--IDYKEEDLE 191 (271)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHcCCeEEEEcCCHHHHHHHHH----hCCc---------------ee--ccCCcCCHH
Confidence 5678999999996 544444444 4778999987 444444432 1110 00 011111000
Q ss_pred ----cccCCCccEEEEeccccCccCHHHHHHHHHHhcCCCeEEEEEEE
Q 027530 140 ----KAVAPPFDYIIGTDVVYAEHLLEPLLQTIFALSGPKTTILLGYE 183 (222)
Q Consensus 140 ----~~~~~~fD~Ii~~d~~y~~~~~~~ll~~~~~~l~~~g~~~l~~~ 183 (222)
......+|+++.+-.- ......+.+.++++|.++....
T Consensus 192 ~~~~~~~~~~~d~vi~~~~~------~~~~~~~~~~l~~~G~~v~~~~ 233 (271)
T cd05188 192 EELRLTGGGGADVVIDAVGG------PETLAQALRLLRPGGRIVVVGG 233 (271)
T ss_pred HHHHHhcCCCCCEEEECCCC------HHHHHHHHHhcccCCEEEEEcc
Confidence 1124579999854211 1456667778889998876543
No 367
>PRK06172 short chain dehydrogenase; Provisional
Probab=84.98 E-value=2.8 Score=33.61 Aligned_cols=79 Identities=19% Similarity=0.225 Sum_probs=48.0
Q ss_pred CCCCeEEEeCCCccHHH---HHHHHhCCEEEEecc-hhhHHHHHHHHHHhhccccccCCCCCCCCCceEEEEeecCCCcc
Q 027530 63 LKGKRVIELGAGCGVAG---FGMALLGCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSGNLLGSIQAVELDWGNEDH 138 (222)
Q Consensus 63 ~~~~~vLelGcG~G~~~---i~la~~g~~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~ 138 (222)
++++++|=.|++.|+-. ..+++.|++|++++. ++-++.+.+.+... ..++.+...|..+...
T Consensus 5 l~~k~ilItGas~~iG~~ia~~l~~~G~~v~~~~r~~~~~~~~~~~~~~~--------------~~~~~~~~~D~~~~~~ 70 (253)
T PRK06172 5 FSGKVALVTGGAAGIGRATALAFAREGAKVVVADRDAAGGEETVALIREA--------------GGEALFVACDVTRDAE 70 (253)
T ss_pred CCCCEEEEeCCCchHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHhc--------------CCceEEEEcCCCCHHH
Confidence 56789999998765433 234456889999997 44444444444322 1356777777776543
Q ss_pred ccc-------cCCCccEEEEeccc
Q 027530 139 IKA-------VAPPFDYIIGTDVV 155 (222)
Q Consensus 139 ~~~-------~~~~fD~Ii~~d~~ 155 (222)
... ..++.|+||.+--.
T Consensus 71 i~~~~~~~~~~~g~id~li~~ag~ 94 (253)
T PRK06172 71 VKALVEQTIAAYGRLDYAFNNAGI 94 (253)
T ss_pred HHHHHHHHHHHhCCCCEEEECCCC
Confidence 211 12468999876543
No 368
>PRK07035 short chain dehydrogenase; Provisional
Probab=84.79 E-value=6 Score=31.62 Aligned_cols=79 Identities=19% Similarity=0.289 Sum_probs=47.2
Q ss_pred CCCCCeEEEeCCCccHHH---HHHHHhCCEEEEecc-hhhHHHHHHHHHHhhccccccCCCCCCCCCceEEEEeecCCCc
Q 027530 62 KLKGKRVIELGAGCGVAG---FGMALLGCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSGNLLGSIQAVELDWGNED 137 (222)
Q Consensus 62 ~~~~~~vLelGcG~G~~~---i~la~~g~~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~v~~~~~d~~~~~ 137 (222)
.+++++||=.|++.|+-. ..+++.|++|++++. .+.++.+.+.+...+ .++.+...|..+..
T Consensus 5 ~l~~k~vlItGas~gIG~~l~~~l~~~G~~Vi~~~r~~~~~~~~~~~~~~~~--------------~~~~~~~~D~~~~~ 70 (252)
T PRK07035 5 DLTGKIALVTGASRGIGEAIAKLLAQQGAHVIVSSRKLDGCQAVADAIVAAG--------------GKAEALACHIGEME 70 (252)
T ss_pred ccCCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcC--------------CeEEEEEcCCCCHH
Confidence 456789999998877532 334556899999997 444444444333211 24556677776654
Q ss_pred ccc-------ccCCCccEEEEecc
Q 027530 138 HIK-------AVAPPFDYIIGTDV 154 (222)
Q Consensus 138 ~~~-------~~~~~fD~Ii~~d~ 154 (222)
... ..-++.|++|.+-.
T Consensus 71 ~~~~~~~~~~~~~~~id~li~~ag 94 (252)
T PRK07035 71 QIDALFAHIRERHGRLDILVNNAA 94 (252)
T ss_pred HHHHHHHHHHHHcCCCCEEEECCC
Confidence 321 11246899886543
No 369
>PRK07814 short chain dehydrogenase; Provisional
Probab=84.63 E-value=16 Score=29.55 Aligned_cols=77 Identities=17% Similarity=0.239 Sum_probs=46.0
Q ss_pred CCCCCeEEEeCCCccHHHHH----HHHhCCEEEEecc-hhhHHHHHHHHHHhhccccccCCCCCCCCCceEEEEeecCCC
Q 027530 62 KLKGKRVIELGAGCGVAGFG----MALLGCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSGNLLGSIQAVELDWGNE 136 (222)
Q Consensus 62 ~~~~~~vLelGcG~G~~~i~----la~~g~~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~v~~~~~d~~~~ 136 (222)
.++++++|=.|++.| +|.. ++..|++|++++. ++.++.+.+.+... ...+.+...|..+.
T Consensus 7 ~~~~~~vlItGasgg-IG~~~a~~l~~~G~~Vi~~~r~~~~~~~~~~~l~~~--------------~~~~~~~~~D~~~~ 71 (263)
T PRK07814 7 RLDDQVAVVTGAGRG-LGAAIALAFAEAGADVLIAARTESQLDEVAEQIRAA--------------GRRAHVVAADLAHP 71 (263)
T ss_pred cCCCCEEEEECCCCh-HHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhc--------------CCcEEEEEccCCCH
Confidence 357889999997554 4443 3456889999997 44444444333321 13566777777665
Q ss_pred ccccc-------cCCCccEEEEec
Q 027530 137 DHIKA-------VAPPFDYIIGTD 153 (222)
Q Consensus 137 ~~~~~-------~~~~fD~Ii~~d 153 (222)
..... .-+++|+||.+-
T Consensus 72 ~~~~~~~~~~~~~~~~id~vi~~A 95 (263)
T PRK07814 72 EATAGLAGQAVEAFGRLDIVVNNV 95 (263)
T ss_pred HHHHHHHHHHHHHcCCCCEEEECC
Confidence 43210 124689998754
No 370
>PRK08703 short chain dehydrogenase; Provisional
Probab=84.60 E-value=7.6 Score=30.78 Aligned_cols=43 Identities=26% Similarity=0.335 Sum_probs=27.4
Q ss_pred CCCCCeEEEeCCCccHHHHH----HHHhCCEEEEecc-hhhHHHHHHHH
Q 027530 62 KLKGKRVIELGAGCGVAGFG----MALLGCNVITTDQ-IEVLPLLKRNV 105 (222)
Q Consensus 62 ~~~~~~vLelGcG~G~~~i~----la~~g~~v~~~D~-~~~l~~~~~n~ 105 (222)
.++++++|=.||+.|+ |.. +++.|++|++++. ++.++.....+
T Consensus 3 ~l~~k~vlItG~sggi-G~~la~~l~~~g~~V~~~~r~~~~~~~~~~~l 50 (239)
T PRK08703 3 TLSDKTILVTGASQGL-GEQVAKAYAAAGATVILVARHQKKLEKVYDAI 50 (239)
T ss_pred CCCCCEEEEECCCCcH-HHHHHHHHHHcCCEEEEEeCChHHHHHHHHHH
Confidence 3567899999975544 433 4445889999997 44444443333
No 371
>cd01078 NAD_bind_H4MPT_DH NADP binding domain of methylene tetrahydromethanopterin dehydrogenase. Methylene Tetrahydromethanopterin Dehydrogenase (H4MPT DH) NADP binding domain. NADP-dependent H4MPT DH catalyzes the dehydrogenation of methylene- H4MPT and methylene-tetrahydrofolate (H4F) with NADP+ as cofactor. H4F and H4MPT are both cofactors that carry the one-carbon units between the formyl and methyl oxidation level. H4F and H4MPT are structurally analogous to each other with respect to the pterin moiety, but each has distinct side chain. H4MPT is present only in anaerobic methanogenic archaea and aerobic methylotrophic proteobacteria. H4MPT seems to have evolved independently from H4F and functions as a distinct carrier in C1 metabolism. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclo
Probab=84.54 E-value=8.9 Score=29.69 Aligned_cols=34 Identities=35% Similarity=0.505 Sum_probs=23.7
Q ss_pred CCCCCCeEEEeCC-Cc-cH-HHHHHHHhCCEEEEecc
Q 027530 61 SKLKGKRVIELGA-GC-GV-AGFGMALLGCNVITTDQ 94 (222)
Q Consensus 61 ~~~~~~~vLelGc-G~-G~-~~i~la~~g~~v~~~D~ 94 (222)
..+++++++=+|+ |. |. ....+++.|++|+.++.
T Consensus 24 ~~l~~~~vlVlGgtG~iG~~~a~~l~~~g~~V~l~~R 60 (194)
T cd01078 24 KDLKGKTAVVLGGTGPVGQRAAVLLAREGARVVLVGR 60 (194)
T ss_pred cCCCCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEcC
Confidence 3567889999996 43 53 33445566888988876
No 372
>PRK06194 hypothetical protein; Provisional
Probab=84.48 E-value=3.5 Score=33.79 Aligned_cols=79 Identities=18% Similarity=0.192 Sum_probs=45.4
Q ss_pred CCCCeEEEeCCCccHH---HHHHHHhCCEEEEecc-hhhHHHHHHHHHHhhccccccCCCCCCCCCceEEEEeecCCCcc
Q 027530 63 LKGKRVIELGAGCGVA---GFGMALLGCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSGNLLGSIQAVELDWGNEDH 138 (222)
Q Consensus 63 ~~~~~vLelGcG~G~~---~i~la~~g~~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~ 138 (222)
++++++|=.|++.|+- ...+++.|++|+++|. .+.++.....+... ..++.+...|..+...
T Consensus 4 ~~~k~vlVtGasggIG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~--------------~~~~~~~~~D~~d~~~ 69 (287)
T PRK06194 4 FAGKVAVITGAASGFGLAFARIGAALGMKLVLADVQQDALDRAVAELRAQ--------------GAEVLGVRTDVSDAAQ 69 (287)
T ss_pred CCCCEEEEeCCccHHHHHHHHHHHHCCCEEEEEeCChHHHHHHHHHHHhc--------------CCeEEEEECCCCCHHH
Confidence 4578899888765542 2234456889999997 44444333323211 1356677777766543
Q ss_pred ccc-------cCCCccEEEEeccc
Q 027530 139 IKA-------VAPPFDYIIGTDVV 155 (222)
Q Consensus 139 ~~~-------~~~~fD~Ii~~d~~ 155 (222)
... ..++.|+|+.+--+
T Consensus 70 ~~~~~~~~~~~~g~id~vi~~Ag~ 93 (287)
T PRK06194 70 VEALADAALERFGAVHLLFNNAGV 93 (287)
T ss_pred HHHHHHHHHHHcCCCCEEEECCCC
Confidence 211 12468999876544
No 373
>PRK08589 short chain dehydrogenase; Validated
Probab=84.44 E-value=7.1 Score=31.83 Aligned_cols=79 Identities=23% Similarity=0.329 Sum_probs=47.3
Q ss_pred CCCCeEEEeCCCccH---HHHHHHHhCCEEEEecchhhHHHHHHHHHHhhccccccCCCCCCCCCceEEEEeecCCCccc
Q 027530 63 LKGKRVIELGAGCGV---AGFGMALLGCNVITTDQIEVLPLLKRNVEWNTSRISQMNPGSGNLLGSIQAVELDWGNEDHI 139 (222)
Q Consensus 63 ~~~~~vLelGcG~G~---~~i~la~~g~~v~~~D~~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~ 139 (222)
++++++|=.|++.|+ ++..+++.|++|++++.++.++.+.+.+...+ .++.+...|..+....
T Consensus 4 l~~k~vlItGas~gIG~aia~~l~~~G~~vi~~~r~~~~~~~~~~~~~~~--------------~~~~~~~~Dl~~~~~~ 69 (272)
T PRK08589 4 LENKVAVITGASTGIGQASAIALAQEGAYVLAVDIAEAVSETVDKIKSNG--------------GKAKAYHVDISDEQQV 69 (272)
T ss_pred CCCCEEEEECCCchHHHHHHHHHHHCCCEEEEEeCcHHHHHHHHHHHhcC--------------CeEEEEEeecCCHHHH
Confidence 467899999988765 23345556899999987543333333333211 3567777777765432
Q ss_pred c-------ccCCCccEEEEeccc
Q 027530 140 K-------AVAPPFDYIIGTDVV 155 (222)
Q Consensus 140 ~-------~~~~~fD~Ii~~d~~ 155 (222)
. ..-++.|++|.+--+
T Consensus 70 ~~~~~~~~~~~g~id~li~~Ag~ 92 (272)
T PRK08589 70 KDFASEIKEQFGRVDVLFNNAGV 92 (272)
T ss_pred HHHHHHHHHHcCCcCEEEECCCC
Confidence 1 112468998876543
No 374
>PF01555 N6_N4_Mtase: DNA methylase; InterPro: IPR002941 This domain is found in DNA methylases. In prokaryotes, the major role of DNA methylation is to protect host DNA against degradation by restriction enzymes. This family contains both N-4 cytosine-specific DNA methylases and N-6 Adenine-specific DNA methylases. N-4 cytosine-specific DNA methylases (2.1.1.113 from EC) [] are enzymes that specifically methylate the amino group at the C-4 position of cytosines in DNA. Such enzymes are found as components of type II restriction-modification systems in prokaryotes. Such enzymes recognise a specific sequence in DNA and methylate a cytosine in that sequence. By this action they protect DNA from cleavage by type II restriction enzymes that recognise the same sequence. N-6 adenine-specific DNA methylases (2.1.1.72 from EC) (A-Mtase) are enzymes that specifically methylate the amino group at the C-6 position of adenines in DNA. Such enzymes are found in the three existing types of bacterial restriction-modification systems (in type I system the A-Mtase is the product of the hsdM gene, and in type III it is the product of the mod gene). All of these enzymes recognise a specific sequence in DNA and methylate an adenine in that sequence.; GO: 0003677 DNA binding, 0008170 N-methyltransferase activity, 0006306 DNA methylation; PDB: 2ZIF_A 2ZIE_A 2ZIG_A 1NW6_A 1NW8_A 1NW7_A 1NW5_A 1EG2_A 1BOO_A 1G60_B ....
Probab=84.34 E-value=2.9 Score=32.79 Aligned_cols=28 Identities=18% Similarity=0.319 Sum_probs=21.2
Q ss_pred HHHHHHHHHHhcCCCeEEEEEEEEcChh
Q 027530 161 LEPLLQTIFALSGPKTTILLGYEIRSTS 188 (222)
Q Consensus 161 ~~~ll~~~~~~l~~~g~~~l~~~~r~~~ 188 (222)
...++..+.++|+|+|.+++....+...
T Consensus 35 ~~~~~~~~~rvLk~~g~~~i~~~~~~~~ 62 (231)
T PF01555_consen 35 MEEWLKECYRVLKPGGSIFIFIDDREIA 62 (231)
T ss_dssp HHHHHHHHHHHEEEEEEEEEEE-CCEEC
T ss_pred HHHHHHHHHhhcCCCeeEEEEecchhhh
Confidence 4667888889999999998877655543
No 375
>PF10354 DUF2431: Domain of unknown function (DUF2431); InterPro: IPR019446 This entry represents the N-terminal domain of a family of proteins whose function is not known.
Probab=84.22 E-value=16 Score=27.81 Aligned_cols=46 Identities=20% Similarity=0.141 Sum_probs=35.0
Q ss_pred cCCCccEEEEeccccC-------------ccCHHHHHHHHHHhcCCCeEEEEEEEEcCh
Q 027530 142 VAPPFDYIIGTDVVYA-------------EHLLEPLLQTIFALSGPKTTILLGYEIRST 187 (222)
Q Consensus 142 ~~~~fD~Ii~~d~~y~-------------~~~~~~ll~~~~~~l~~~g~~~l~~~~r~~ 187 (222)
...+||.||.+=|--. ...+..+++.+.++|+++|.++|+.....+
T Consensus 72 ~~~~FDrIiFNFPH~G~~~~~~~~~i~~nr~Ll~~Ff~Sa~~~L~~~G~IhVTl~~~~p 130 (166)
T PF10354_consen 72 KNQRFDRIIFNFPHVGGGSEDGKRNIRLNRELLRGFFKSASQLLKPDGEIHVTLKDGQP 130 (166)
T ss_pred cCCcCCEEEEeCCCCCCCccchhHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEeCCCCC
Confidence 3578999998865533 124666888889999999999998876655
No 376
>PRK08267 short chain dehydrogenase; Provisional
Probab=84.02 E-value=12 Score=29.98 Aligned_cols=74 Identities=20% Similarity=0.204 Sum_probs=43.6
Q ss_pred CeEEEeCCCccH---HHHHHHHhCCEEEEecc-hhhHHHHHHHHHHhhccccccCCCCCCCCCceEEEEeecCCCccccc
Q 027530 66 KRVIELGAGCGV---AGFGMALLGCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSGNLLGSIQAVELDWGNEDHIKA 141 (222)
Q Consensus 66 ~~vLelGcG~G~---~~i~la~~g~~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~ 141 (222)
+++|=.|++.|+ ++..+++.|++|++++. .+.++.+...+. ..++.+...|..+......
T Consensus 2 k~vlItGasg~iG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~~~----------------~~~~~~~~~D~~~~~~v~~ 65 (260)
T PRK08267 2 KSIFITGAASGIGRATALLFAAEGWRVGAYDINEAGLAALAAELG----------------AGNAWTGALDVTDRAAWDA 65 (260)
T ss_pred cEEEEeCCCchHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHhc----------------CCceEEEEecCCCHHHHHH
Confidence 468888877554 22334456889999986 444444333222 1356777888776543211
Q ss_pred --------cCCCccEEEEeccc
Q 027530 142 --------VAPPFDYIIGTDVV 155 (222)
Q Consensus 142 --------~~~~fD~Ii~~d~~ 155 (222)
..+++|++|.+--.
T Consensus 66 ~~~~~~~~~~~~id~vi~~ag~ 87 (260)
T PRK08267 66 ALADFAAATGGRLDVLFNNAGI 87 (260)
T ss_pred HHHHHHHHcCCCCCEEEECCCC
Confidence 13578998876443
No 377
>PRK07478 short chain dehydrogenase; Provisional
Probab=83.76 E-value=4.6 Score=32.38 Aligned_cols=78 Identities=24% Similarity=0.207 Sum_probs=46.7
Q ss_pred CCCCeEEEeCCCccH---HHHHHHHhCCEEEEecc-hhhHHHHHHHHHHhhccccccCCCCCCCCCceEEEEeecCCCcc
Q 027530 63 LKGKRVIELGAGCGV---AGFGMALLGCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSGNLLGSIQAVELDWGNEDH 138 (222)
Q Consensus 63 ~~~~~vLelGcG~G~---~~i~la~~g~~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~ 138 (222)
++++++|=.|++.|+ +...+++.|++|++++. ++.++.+.+.+...+ .++.+...|..+.+.
T Consensus 4 ~~~k~~lItGas~giG~~ia~~l~~~G~~v~~~~r~~~~~~~~~~~~~~~~--------------~~~~~~~~D~~~~~~ 69 (254)
T PRK07478 4 LNGKVAIITGASSGIGRAAAKLFAREGAKVVVGARRQAELDQLVAEIRAEG--------------GEAVALAGDVRDEAY 69 (254)
T ss_pred CCCCEEEEeCCCChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcC--------------CcEEEEEcCCCCHHH
Confidence 467889989887664 22344556899999987 444444444443222 246667777765543
Q ss_pred cc-------ccCCCccEEEEecc
Q 027530 139 IK-------AVAPPFDYIIGTDV 154 (222)
Q Consensus 139 ~~-------~~~~~fD~Ii~~d~ 154 (222)
.. ..-++.|++|.+--
T Consensus 70 ~~~~~~~~~~~~~~id~li~~ag 92 (254)
T PRK07478 70 AKALVALAVERFGGLDIAFNNAG 92 (254)
T ss_pred HHHHHHHHHHhcCCCCEEEECCC
Confidence 21 11247898886643
No 378
>cd08281 liver_ADH_like1 Zinc-dependent alcohol dehydrogenases (ADH) and class III ADG (AKA formaldehyde dehydrogenase). NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. This group contains members identified as zinc dependent alcohol dehydrogenases (ADH), and class III ADG (aka formaldehyde dehydrogenase, FDH). Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. Class III ADH are also know as glutathione-dependent formaldehyde dehyd
Probab=83.71 E-value=3.5 Score=35.40 Aligned_cols=41 Identities=27% Similarity=0.400 Sum_probs=27.6
Q ss_pred CCCCCeEEEeCCCc-cHHHHHHHH-hCC-EEEEecc-hhhHHHHH
Q 027530 62 KLKGKRVIELGAGC-GVAGFGMAL-LGC-NVITTDQ-IEVLPLLK 102 (222)
Q Consensus 62 ~~~~~~vLelGcG~-G~~~i~la~-~g~-~v~~~D~-~~~l~~~~ 102 (222)
..+|.+||=.|+|. |...+.+|+ .|+ +|+++|. ++-++.++
T Consensus 189 i~~g~~VlV~G~G~vG~~a~~lak~~G~~~Vi~~~~~~~r~~~a~ 233 (371)
T cd08281 189 VRPGQSVAVVGLGGVGLSALLGAVAAGASQVVAVDLNEDKLALAR 233 (371)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHcCCCcEEEEcCCHHHHHHHH
Confidence 44678888899875 666655554 477 5999997 44555543
No 379
>PRK07062 short chain dehydrogenase; Provisional
Probab=83.66 E-value=8.4 Score=31.06 Aligned_cols=81 Identities=16% Similarity=0.131 Sum_probs=48.9
Q ss_pred CCCCCeEEEeCCCccHH---HHHHHHhCCEEEEecc-hhhHHHHHHHHHHhhccccccCCCCCCCCCceEEEEeecCCCc
Q 027530 62 KLKGKRVIELGAGCGVA---GFGMALLGCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSGNLLGSIQAVELDWGNED 137 (222)
Q Consensus 62 ~~~~~~vLelGcG~G~~---~i~la~~g~~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~v~~~~~d~~~~~ 137 (222)
..+++++|=.|++.|+- +..+++.|++|++++. ++.++.+.+.+.... ...++.+...|..+.+
T Consensus 5 ~l~~k~~lItGas~giG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~------------~~~~~~~~~~D~~~~~ 72 (265)
T PRK07062 5 QLEGRVAVVTGGSSGIGLATVELLLEAGASVAICGRDEERLASAEARLREKF------------PGARLLAARCDVLDEA 72 (265)
T ss_pred ccCCCEEEEeCCCchHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHHHhhC------------CCceEEEEEecCCCHH
Confidence 45789999999887652 3344556899999987 444444444333221 0125667777777654
Q ss_pred ccc-------ccCCCccEEEEecc
Q 027530 138 HIK-------AVAPPFDYIIGTDV 154 (222)
Q Consensus 138 ~~~-------~~~~~fD~Ii~~d~ 154 (222)
... ..-+..|++|.+--
T Consensus 73 ~v~~~~~~~~~~~g~id~li~~Ag 96 (265)
T PRK07062 73 DVAAFAAAVEARFGGVDMLVNNAG 96 (265)
T ss_pred HHHHHHHHHHHhcCCCCEEEECCC
Confidence 321 11256899887643
No 380
>PRK09291 short chain dehydrogenase; Provisional
Probab=83.63 E-value=5.9 Score=31.69 Aligned_cols=75 Identities=21% Similarity=0.226 Sum_probs=44.2
Q ss_pred CCeEEEeCCCccHHHHH----HHHhCCEEEEecc-hhhHHHHHHHHHHhhccccccCCCCCCCCCceEEEEeecCCCccc
Q 027530 65 GKRVIELGAGCGVAGFG----MALLGCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSGNLLGSIQAVELDWGNEDHI 139 (222)
Q Consensus 65 ~~~vLelGcG~G~~~i~----la~~g~~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~ 139 (222)
++++|=.|++.|+ |.. +++.|++|++++. ++..+.++...... ...+.+...|+.+....
T Consensus 2 ~~~vlVtGasg~i-G~~ia~~l~~~G~~v~~~~r~~~~~~~~~~~~~~~--------------~~~~~~~~~D~~~~~~~ 66 (257)
T PRK09291 2 SKTILITGAGSGF-GREVALRLARKGHNVIAGVQIAPQVTALRAEAARR--------------GLALRVEKLDLTDAIDR 66 (257)
T ss_pred CCEEEEeCCCCHH-HHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhc--------------CCcceEEEeeCCCHHHH
Confidence 3578888886554 433 3456889998886 33333333322221 13567788888876443
Q ss_pred cc-cCCCccEEEEecc
Q 027530 140 KA-VAPPFDYIIGTDV 154 (222)
Q Consensus 140 ~~-~~~~fD~Ii~~d~ 154 (222)
.. .....|+||.+--
T Consensus 67 ~~~~~~~id~vi~~ag 82 (257)
T PRK09291 67 AQAAEWDVDVLLNNAG 82 (257)
T ss_pred HHHhcCCCCEEEECCC
Confidence 22 2347899987643
No 381
>PRK06181 short chain dehydrogenase; Provisional
Probab=83.55 E-value=11 Score=30.24 Aligned_cols=75 Identities=20% Similarity=0.217 Sum_probs=42.3
Q ss_pred CeEEEeCCCccHHHHH----HHHhCCEEEEecc-hhhHHHHHHHHHHhhccccccCCCCCCCCCceEEEEeecCCCcccc
Q 027530 66 KRVIELGAGCGVAGFG----MALLGCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSGNLLGSIQAVELDWGNEDHIK 140 (222)
Q Consensus 66 ~~vLelGcG~G~~~i~----la~~g~~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~ 140 (222)
++||=.|+..| +|.. ++..|.+|++++. ++..+.+.+.+... ..++.+...|..+.....
T Consensus 2 ~~vlVtGasg~-iG~~la~~l~~~g~~Vi~~~r~~~~~~~~~~~l~~~--------------~~~~~~~~~Dl~~~~~~~ 66 (263)
T PRK06181 2 KVVIITGASEG-IGRALAVRLARAGAQLVLAARNETRLASLAQELADH--------------GGEALVVPTDVSDAEACE 66 (263)
T ss_pred CEEEEecCCcH-HHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhc--------------CCcEEEEEccCCCHHHHH
Confidence 56887776544 4443 3455889999997 33444333333321 135667777776654321
Q ss_pred c-------cCCCccEEEEeccc
Q 027530 141 A-------VAPPFDYIIGTDVV 155 (222)
Q Consensus 141 ~-------~~~~fD~Ii~~d~~ 155 (222)
. .-...|+||.+--.
T Consensus 67 ~~~~~~~~~~~~id~vi~~ag~ 88 (263)
T PRK06181 67 RLIEAAVARFGGIDILVNNAGI 88 (263)
T ss_pred HHHHHHHHHcCCCCEEEECCCc
Confidence 1 11368999877443
No 382
>PF04072 LCM: Leucine carboxyl methyltransferase; InterPro: IPR007213 This entry represents a group of leucine carboxymethyltransferases which methylate the carboxyl group of leucine residues to form alpha-leucine ester residues. It includes LCTM1 which regulates the activity of serine/threonine phosphatase 2A (PP2A) through methylation of the C-terminal leucine residue of the catalytic subunit of PP2A [, , ]. This affects the heteromultimeric composition of PP2A which in turn affects protein recognition and substrate specificity. Like many other methyltransferases LCTM1 uses S-adenosylmethionine (SAM) as the methyl donor. LCTM1 contains the common SAM-dependent methyltransferase core fold, with various insertions and additions creating a specific PP2A binding site []. This entry also contains LCTM2, a homologue of LCTM1 which is not necessary for PP2A methylation and whose function is not clear.; GO: 0008168 methyltransferase activity; PDB: 2UYQ_A 2CKD_B 2UYO_A 2ZZK_B 2ZWA_B 2ZW9_B 1RJE_C 2OB2_B 1RJF_A 1RJD_A ....
Probab=83.54 E-value=3 Score=32.24 Aligned_cols=44 Identities=25% Similarity=0.379 Sum_probs=30.1
Q ss_pred CeEEEeCCCccHHHHHHHHh--CCEEEEecchhhHHHHHHHHHHhh
Q 027530 66 KRVIELGAGCGVAGFGMALL--GCNVITTDQIEVLPLLKRNVEWNT 109 (222)
Q Consensus 66 ~~vLelGcG~G~~~i~la~~--g~~v~~~D~~~~l~~~~~n~~~n~ 109 (222)
..|+.||||.=.-+..+... +..++=+|.+++++.=++-+..++
T Consensus 80 ~qvV~LGaGlDTr~~Rl~~~~~~~~~~evD~p~v~~~K~~~l~~~~ 125 (183)
T PF04072_consen 80 RQVVNLGAGLDTRAYRLDNPAGGVRWFEVDLPEVIALKRRLLPESG 125 (183)
T ss_dssp SEEEEET-TT--HHHHHHHTTTTEEEEEEE-HHHHHHHHHHHHHTH
T ss_pred cEEEEcCCCCCchHHHhhccccceEEEEeCCHHHHHHHHHHHHhCc
Confidence 38999999987777777664 446778888888887777776664
No 383
>PRK07890 short chain dehydrogenase; Provisional
Probab=83.46 E-value=6.3 Score=31.54 Aligned_cols=79 Identities=24% Similarity=0.261 Sum_probs=46.5
Q ss_pred CCCCeEEEeCCCccH---HHHHHHHhCCEEEEecc-hhhHHHHHHHHHHhhccccccCCCCCCCCCceEEEEeecCCCcc
Q 027530 63 LKGKRVIELGAGCGV---AGFGMALLGCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSGNLLGSIQAVELDWGNEDH 138 (222)
Q Consensus 63 ~~~~~vLelGcG~G~---~~i~la~~g~~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~ 138 (222)
.++++||=.|++.|+ ++..++..|++|+.++. ++-++.+...+...+ .++.+...|..+...
T Consensus 3 l~~k~vlItGa~~~IG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~--------------~~~~~~~~D~~~~~~ 68 (258)
T PRK07890 3 LKGKVVVVSGVGPGLGRTLAVRAARAGADVVLAARTAERLDEVAAEIDDLG--------------RRALAVPTDITDEDQ 68 (258)
T ss_pred cCCCEEEEECCCCcHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHHhC--------------CceEEEecCCCCHHH
Confidence 356889999987664 23345556889999997 433444433333211 356777777765443
Q ss_pred cc-------ccCCCccEEEEeccc
Q 027530 139 IK-------AVAPPFDYIIGTDVV 155 (222)
Q Consensus 139 ~~-------~~~~~fD~Ii~~d~~ 155 (222)
.. ..-++.|+||.+.-.
T Consensus 69 ~~~~~~~~~~~~g~~d~vi~~ag~ 92 (258)
T PRK07890 69 CANLVALALERFGRVDALVNNAFR 92 (258)
T ss_pred HHHHHHHHHHHcCCccEEEECCcc
Confidence 21 012468998876543
No 384
>PRK08085 gluconate 5-dehydrogenase; Provisional
Probab=83.45 E-value=7.5 Score=31.15 Aligned_cols=80 Identities=20% Similarity=0.314 Sum_probs=47.7
Q ss_pred CCCCCeEEEeCCCccH---HHHHHHHhCCEEEEecc-hhhHHHHHHHHHHhhccccccCCCCCCCCCceEEEEeecCCCc
Q 027530 62 KLKGKRVIELGAGCGV---AGFGMALLGCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSGNLLGSIQAVELDWGNED 137 (222)
Q Consensus 62 ~~~~~~vLelGcG~G~---~~i~la~~g~~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~v~~~~~d~~~~~ 137 (222)
.+.++++|=.|++.|+ +...+++.|++|++++. ++.++.+...+...+ ..+.....|+.+.+
T Consensus 6 ~l~~k~~lItGas~giG~~ia~~L~~~G~~vvl~~r~~~~~~~~~~~l~~~~--------------~~~~~~~~Dl~~~~ 71 (254)
T PRK08085 6 SLAGKNILITGSAQGIGFLLATGLAEYGAEIIINDITAERAELAVAKLRQEG--------------IKAHAAPFNVTHKQ 71 (254)
T ss_pred cCCCCEEEEECCCChHHHHHHHHHHHcCCEEEEEcCCHHHHHHHHHHHHhcC--------------CeEEEEecCCCCHH
Confidence 3568899999977664 22344456889999997 444444433333211 24566677777654
Q ss_pred ccc-------ccCCCccEEEEeccc
Q 027530 138 HIK-------AVAPPFDYIIGTDVV 155 (222)
Q Consensus 138 ~~~-------~~~~~fD~Ii~~d~~ 155 (222)
... ..-+++|++|.+--.
T Consensus 72 ~~~~~~~~~~~~~~~id~vi~~ag~ 96 (254)
T PRK08085 72 EVEAAIEHIEKDIGPIDVLINNAGI 96 (254)
T ss_pred HHHHHHHHHHHhcCCCCEEEECCCc
Confidence 321 112468999876543
No 385
>COG3315 O-Methyltransferase involved in polyketide biosynthesis [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=83.39 E-value=4.6 Score=33.94 Aligned_cols=108 Identities=22% Similarity=0.314 Sum_probs=68.8
Q ss_pred CeEEEeCCCccHHHHHHHHh-CCEEEEecchhhHHHHHHHHHHhhccccccCCCCCCCCCceEEEEeecCCCc---ccc-
Q 027530 66 KRVIELGAGCGVAGFGMALL-GCNVITTDQIEVLPLLKRNVEWNTSRISQMNPGSGNLLGSIQAVELDWGNED---HIK- 140 (222)
Q Consensus 66 ~~vLelGcG~G~~~i~la~~-g~~v~~~D~~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~v~~~~~d~~~~~---~~~- 140 (222)
..|+-||||.=.=+.-+-.. +..|.=+|+|++++.=++.+...+.. .....+++..|..+.+ .+.
T Consensus 94 ~qvViLgaGLDTRayRl~~~~~~~vfEvD~Pevi~~K~~~l~e~~~~----------~~~~~~~Va~Dl~~~dw~~~L~~ 163 (297)
T COG3315 94 RQVVILGAGLDTRAYRLDWPKGTRVFEVDLPEVIEFKKKLLAERGAT----------PPAHRRLVAVDLREDDWPQALAA 163 (297)
T ss_pred cEEEEeccccccceeecCCCCCCeEEECCCcHHHHHHHHHhhhcCCC----------CCceEEEEeccccccchHHHHHh
Confidence 67999999943222222211 45788999999888777777665532 1235666665555322 111
Q ss_pred --ccCCCccEEEEeccccC--ccCHHHHHHHHHHhcCCCeEEEEEEE
Q 027530 141 --AVAPPFDYIIGTDVVYA--EHLLEPLLQTIFALSGPKTTILLGYE 183 (222)
Q Consensus 141 --~~~~~fD~Ii~~d~~y~--~~~~~~ll~~~~~~l~~~g~~~l~~~ 183 (222)
......-++|+-.++.. .+....+++.|..++.||..++..+.
T Consensus 164 ~G~d~~~pt~~iaEGLl~YL~~~~v~~ll~~I~~~~~~gS~~~~~~~ 210 (297)
T COG3315 164 AGFDRSRPTLWIAEGLLMYLPEEAVDRLLSRIAALSAPGSRVAFDYS 210 (297)
T ss_pred cCCCcCCCeEEEeccccccCCHHHHHHHHHHHHHhCCCCceEEEecc
Confidence 11334446777777655 45577899999999999998887764
No 386
>PRK05565 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=83.32 E-value=16 Score=28.87 Aligned_cols=78 Identities=26% Similarity=0.302 Sum_probs=45.5
Q ss_pred CCCCeEEEeCCCccHHHHHH----HHhCCEEEEe-cc-hhhHHHHHHHHHHhhccccccCCCCCCCCCceEEEEeecCCC
Q 027530 63 LKGKRVIELGAGCGVAGFGM----ALLGCNVITT-DQ-IEVLPLLKRNVEWNTSRISQMNPGSGNLLGSIQAVELDWGNE 136 (222)
Q Consensus 63 ~~~~~vLelGcG~G~~~i~l----a~~g~~v~~~-D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~v~~~~~d~~~~ 136 (222)
+.++++|=.|+. |.+|..+ ++.|++|+.+ +. ++..+.+...+... ..++.+...|..+.
T Consensus 3 ~~~~~ilI~Gas-g~iG~~la~~l~~~g~~v~~~~~r~~~~~~~~~~~~~~~--------------~~~~~~~~~D~~~~ 67 (247)
T PRK05565 3 LMGKVAIVTGAS-GGIGRAIAELLAKEGAKVVIAYDINEEAAQELLEEIKEE--------------GGDAIAVKADVSSE 67 (247)
T ss_pred CCCCEEEEeCCC-cHHHHHHHHHHHHCCCEEEEEcCCCHHHHHHHHHHHHhc--------------CCeEEEEECCCCCH
Confidence 466788888864 4445444 4458888887 86 44444433333321 13577788787765
Q ss_pred ccccc-------cCCCccEEEEeccc
Q 027530 137 DHIKA-------VAPPFDYIIGTDVV 155 (222)
Q Consensus 137 ~~~~~-------~~~~fD~Ii~~d~~ 155 (222)
..... .-+.+|+||.+.-.
T Consensus 68 ~~~~~~~~~~~~~~~~id~vi~~ag~ 93 (247)
T PRK05565 68 EDVENLVEQIVEKFGKIDILVNNAGI 93 (247)
T ss_pred HHHHHHHHHHHHHhCCCCEEEECCCc
Confidence 43211 11368999876543
No 387
>PRK07792 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=83.32 E-value=5.7 Score=33.16 Aligned_cols=81 Identities=20% Similarity=0.238 Sum_probs=49.1
Q ss_pred CCCCCCeEEEeCCCccH---HHHHHHHhCCEEEEecc-h-hhHHHHHHHHHHhhccccccCCCCCCCCCceEEEEeecCC
Q 027530 61 SKLKGKRVIELGAGCGV---AGFGMALLGCNVITTDQ-I-EVLPLLKRNVEWNTSRISQMNPGSGNLLGSIQAVELDWGN 135 (222)
Q Consensus 61 ~~~~~~~vLelGcG~G~---~~i~la~~g~~v~~~D~-~-~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~v~~~~~d~~~ 135 (222)
..++++++|=.|++.|+ ++..+++.|++|+.+|. + +..+.+...+... ..++.+...|..+
T Consensus 8 ~~l~~k~~lVTGas~gIG~~ia~~L~~~Ga~Vv~~~~~~~~~~~~~~~~i~~~--------------g~~~~~~~~Dv~d 73 (306)
T PRK07792 8 TDLSGKVAVVTGAAAGLGRAEALGLARLGATVVVNDVASALDASDVLDEIRAA--------------GAKAVAVAGDISQ 73 (306)
T ss_pred cCCCCCEEEEECCCChHHHHHHHHHHHCCCEEEEecCCchhHHHHHHHHHHhc--------------CCeEEEEeCCCCC
Confidence 45788999999998875 33445567999999986 3 2343333333322 1356677777765
Q ss_pred Cccccc------cCCCccEEEEeccc
Q 027530 136 EDHIKA------VAPPFDYIIGTDVV 155 (222)
Q Consensus 136 ~~~~~~------~~~~fD~Ii~~d~~ 155 (222)
.+.... .-++.|++|.+--+
T Consensus 74 ~~~~~~~~~~~~~~g~iD~li~nAG~ 99 (306)
T PRK07792 74 RATADELVATAVGLGGLDIVVNNAGI 99 (306)
T ss_pred HHHHHHHHHHHHHhCCCCEEEECCCC
Confidence 432210 02578998876433
No 388
>PRK12823 benD 1,6-dihydroxycyclohexa-2,4-diene-1-carboxylate dehydrogenase; Provisional
Probab=83.11 E-value=5.7 Score=31.94 Aligned_cols=78 Identities=21% Similarity=0.256 Sum_probs=45.9
Q ss_pred CCCCCeEEEeCCCccH---HHHHHHHhCCEEEEecchhhHHHHHHHHHHhhccccccCCCCCCCCCceEEEEeecCCCcc
Q 027530 62 KLKGKRVIELGAGCGV---AGFGMALLGCNVITTDQIEVLPLLKRNVEWNTSRISQMNPGSGNLLGSIQAVELDWGNEDH 138 (222)
Q Consensus 62 ~~~~~~vLelGcG~G~---~~i~la~~g~~v~~~D~~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~ 138 (222)
.++++++|=.|++.|+ ++..+++.|++|+.+|..+....+.+.+... ...+.+...|..+...
T Consensus 5 ~~~~k~vlVtGas~gIG~~la~~l~~~G~~v~~~~r~~~~~~~~~~~~~~--------------~~~~~~~~~D~~~~~~ 70 (260)
T PRK12823 5 RFAGKVVVVTGAAQGIGRGVALRAAAEGARVVLVDRSELVHEVAAELRAA--------------GGEALALTADLETYAG 70 (260)
T ss_pred ccCCCEEEEeCCCchHHHHHHHHHHHCCCEEEEEeCchHHHHHHHHHHhc--------------CCeEEEEEEeCCCHHH
Confidence 4578899999987665 2334455688999998744333333333221 1346667777776432
Q ss_pred cc-------ccCCCccEEEEec
Q 027530 139 IK-------AVAPPFDYIIGTD 153 (222)
Q Consensus 139 ~~-------~~~~~fD~Ii~~d 153 (222)
.. ...+.+|++|.+-
T Consensus 71 ~~~~~~~~~~~~~~id~lv~nA 92 (260)
T PRK12823 71 AQAAMAAAVEAFGRIDVLINNV 92 (260)
T ss_pred HHHHHHHHHHHcCCCeEEEECC
Confidence 21 1124689988654
No 389
>PRK09242 tropinone reductase; Provisional
Probab=82.81 E-value=8.4 Score=30.91 Aligned_cols=81 Identities=12% Similarity=0.202 Sum_probs=48.5
Q ss_pred CCCCCeEEEeCCCccHHH---HHHHHhCCEEEEecc-hhhHHHHHHHHHHhhccccccCCCCCCCCCceEEEEeecCCCc
Q 027530 62 KLKGKRVIELGAGCGVAG---FGMALLGCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSGNLLGSIQAVELDWGNED 137 (222)
Q Consensus 62 ~~~~~~vLelGcG~G~~~---i~la~~g~~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~v~~~~~d~~~~~ 137 (222)
.++++++|=.|++.|+-. ..+++.|++|++++. .+.++....++.... ...++.+...|..+..
T Consensus 6 ~~~~k~~lItGa~~gIG~~~a~~l~~~G~~v~~~~r~~~~~~~~~~~l~~~~------------~~~~~~~~~~Dl~~~~ 73 (257)
T PRK09242 6 RLDGQTALITGASKGIGLAIAREFLGLGADVLIVARDADALAQARDELAEEF------------PEREVHGLAADVSDDE 73 (257)
T ss_pred ccCCCEEEEeCCCchHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHhhC------------CCCeEEEEECCCCCHH
Confidence 457899999998766422 334456889999987 445555544444321 0235666777776543
Q ss_pred ccc-------ccCCCccEEEEecc
Q 027530 138 HIK-------AVAPPFDYIIGTDV 154 (222)
Q Consensus 138 ~~~-------~~~~~fD~Ii~~d~ 154 (222)
... ..-++.|+|+.+--
T Consensus 74 ~~~~~~~~~~~~~g~id~li~~ag 97 (257)
T PRK09242 74 DRRAILDWVEDHWDGLHILVNNAG 97 (257)
T ss_pred HHHHHHHHHHHHcCCCCEEEECCC
Confidence 221 11256899886653
No 390
>PRK06128 oxidoreductase; Provisional
Probab=82.55 E-value=19 Score=29.84 Aligned_cols=79 Identities=15% Similarity=0.188 Sum_probs=43.9
Q ss_pred CCCCCeEEEeCCCccH---HHHHHHHhCCEEEEecch-h--hHHHHHHHHHHhhccccccCCCCCCCCCceEEEEeecCC
Q 027530 62 KLKGKRVIELGAGCGV---AGFGMALLGCNVITTDQI-E--VLPLLKRNVEWNTSRISQMNPGSGNLLGSIQAVELDWGN 135 (222)
Q Consensus 62 ~~~~~~vLelGcG~G~---~~i~la~~g~~v~~~D~~-~--~l~~~~~n~~~n~~~~~~~~~~~~~~~~~v~~~~~d~~~ 135 (222)
.++++++|=.|+..|+ ++..+++.|++|+.++.+ + ..+...+.+... ..++.+...|..+
T Consensus 52 ~l~~k~vlITGas~gIG~~~a~~l~~~G~~V~i~~~~~~~~~~~~~~~~~~~~--------------~~~~~~~~~Dl~~ 117 (300)
T PRK06128 52 RLQGRKALITGADSGIGRATAIAFAREGADIALNYLPEEEQDAAEVVQLIQAE--------------GRKAVALPGDLKD 117 (300)
T ss_pred ccCCCEEEEecCCCcHHHHHHHHHHHcCCEEEEEeCCcchHHHHHHHHHHHHc--------------CCeEEEEecCCCC
Confidence 3577899999976654 223344568898877652 2 222222222221 1245667777765
Q ss_pred Ccccc-------ccCCCccEEEEecc
Q 027530 136 EDHIK-------AVAPPFDYIIGTDV 154 (222)
Q Consensus 136 ~~~~~-------~~~~~fD~Ii~~d~ 154 (222)
..... ..-++.|++|.+--
T Consensus 118 ~~~v~~~~~~~~~~~g~iD~lV~nAg 143 (300)
T PRK06128 118 EAFCRQLVERAVKELGGLDILVNIAG 143 (300)
T ss_pred HHHHHHHHHHHHHHhCCCCEEEECCc
Confidence 43221 11246899987654
No 391
>TIGR01963 PHB_DH 3-hydroxybutyrate dehydrogenase. This model represents a subfamily of the short chain dehydrogenases. Characterized members so far as 3-hydroxybutyrate dehydrogenases and are found in species that accumulate ester polmers called polyhydroxyalkanoic acids (PHAs) under certain conditions. Several members of the family are from species not known to accumulate PHAs, including Oceanobacillus iheyensis and Bacillus subtilis. However, polymer formation is not required for there be a role for 3-hydroxybutyrate dehydrogenase; it may be members of this family have the same function in those species.
Probab=82.41 E-value=7.3 Score=31.03 Aligned_cols=75 Identities=23% Similarity=0.220 Sum_probs=42.9
Q ss_pred CeEEEeCCCccHHHHHHH----HhCCEEEEecc-hhhHHHHHHHHHHhhccccccCCCCCCCCCceEEEEeecCCCccc-
Q 027530 66 KRVIELGAGCGVAGFGMA----LLGCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSGNLLGSIQAVELDWGNEDHI- 139 (222)
Q Consensus 66 ~~vLelGcG~G~~~i~la----~~g~~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~- 139 (222)
+++|=.|+. |.+|..++ +.|++|++++. ++..+.+...+... ..++.+...|+.+.+..
T Consensus 2 ~~vlItGa~-g~lG~~l~~~l~~~g~~v~~~~r~~~~~~~~~~~~~~~--------------~~~~~~~~~D~~~~~~~~ 66 (255)
T TIGR01963 2 KTALVTGAA-SGIGLAIALALAAAGANVVVNDLGEAGAEAAAKVATDA--------------GGSVIYLVADVTKEDEIA 66 (255)
T ss_pred CEEEEcCCc-chHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhc--------------CCceEEEECCCCCHHHHH
Confidence 567778855 44454444 45889999987 44333333333221 13577788888765422
Q ss_pred ------cccCCCccEEEEeccc
Q 027530 140 ------KAVAPPFDYIIGTDVV 155 (222)
Q Consensus 140 ------~~~~~~fD~Ii~~d~~ 155 (222)
.......|+|+.+...
T Consensus 67 ~~~~~~~~~~~~~d~vi~~a~~ 88 (255)
T TIGR01963 67 DMIAAAAAEFGGLDILVNNAGI 88 (255)
T ss_pred HHHHHHHHhcCCCCEEEECCCC
Confidence 1123458888876533
No 392
>PLN02178 cinnamyl-alcohol dehydrogenase
Probab=82.24 E-value=13 Score=32.09 Aligned_cols=31 Identities=26% Similarity=0.354 Sum_probs=23.3
Q ss_pred CCCeEEEeCCCc-cHHHHHHHH-hCCEEEEecc
Q 027530 64 KGKRVIELGAGC-GVAGFGMAL-LGCNVITTDQ 94 (222)
Q Consensus 64 ~~~~vLelGcG~-G~~~i~la~-~g~~v~~~D~ 94 (222)
+|.+||=.|+|. |+..+.+|+ +|++|+++|.
T Consensus 178 ~g~~VlV~G~G~vG~~avq~Ak~~Ga~Vi~~~~ 210 (375)
T PLN02178 178 SGKRLGVNGLGGLGHIAVKIGKAFGLRVTVISR 210 (375)
T ss_pred CCCEEEEEcccHHHHHHHHHHHHcCCeEEEEeC
Confidence 678898899875 666666665 4888888875
No 393
>PRK07523 gluconate 5-dehydrogenase; Provisional
Probab=82.19 E-value=9.2 Score=30.63 Aligned_cols=79 Identities=22% Similarity=0.343 Sum_probs=47.2
Q ss_pred CCCCCeEEEeCCCccHHHHHH----HHhCCEEEEecc-hhhHHHHHHHHHHhhccccccCCCCCCCCCceEEEEeecCCC
Q 027530 62 KLKGKRVIELGAGCGVAGFGM----ALLGCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSGNLLGSIQAVELDWGNE 136 (222)
Q Consensus 62 ~~~~~~vLelGcG~G~~~i~l----a~~g~~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~v~~~~~d~~~~ 136 (222)
.++++++|=.|+.. -+|..+ ++.|++|++++. ++.++.+...+...+ .++.+...|..+.
T Consensus 7 ~~~~k~vlItGa~g-~iG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~i~~~~--------------~~~~~~~~D~~~~ 71 (255)
T PRK07523 7 DLTGRRALVTGSSQ-GIGYALAEGLAQAGAEVILNGRDPAKLAAAAESLKGQG--------------LSAHALAFDVTDH 71 (255)
T ss_pred CCCCCEEEEECCcc-hHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHhcC--------------ceEEEEEccCCCH
Confidence 45789999999654 444444 345889999987 444444444443221 2466677777665
Q ss_pred cccc-------ccCCCccEEEEeccc
Q 027530 137 DHIK-------AVAPPFDYIIGTDVV 155 (222)
Q Consensus 137 ~~~~-------~~~~~fD~Ii~~d~~ 155 (222)
.... ..-...|++|.+.-.
T Consensus 72 ~~~~~~~~~~~~~~~~~d~li~~ag~ 97 (255)
T PRK07523 72 DAVRAAIDAFEAEIGPIDILVNNAGM 97 (255)
T ss_pred HHHHHHHHHHHHhcCCCCEEEECCCC
Confidence 4321 112468988876544
No 394
>PRK12481 2-deoxy-D-gluconate 3-dehydrogenase; Provisional
Probab=82.14 E-value=8.4 Score=30.98 Aligned_cols=79 Identities=23% Similarity=0.319 Sum_probs=46.6
Q ss_pred CCCCCeEEEeCCCccH---HHHHHHHhCCEEEEecchhhHHHHHHHHHHhhccccccCCCCCCCCCceEEEEeecCCCcc
Q 027530 62 KLKGKRVIELGAGCGV---AGFGMALLGCNVITTDQIEVLPLLKRNVEWNTSRISQMNPGSGNLLGSIQAVELDWGNEDH 138 (222)
Q Consensus 62 ~~~~~~vLelGcG~G~---~~i~la~~g~~v~~~D~~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~ 138 (222)
.++++++|=.|++.|+ ++..+++.|++|++++..+. +.+.+.++.. ..++.+...|..+...
T Consensus 5 ~l~~k~~lItGas~gIG~aia~~l~~~G~~vv~~~~~~~-~~~~~~~~~~--------------~~~~~~~~~Dl~~~~~ 69 (251)
T PRK12481 5 DLNGKVAIITGCNTGLGQGMAIGLAKAGADIVGVGVAEA-PETQAQVEAL--------------GRKFHFITADLIQQKD 69 (251)
T ss_pred ccCCCEEEEeCCCchHHHHHHHHHHHCCCEEEEecCchH-HHHHHHHHHc--------------CCeEEEEEeCCCCHHH
Confidence 3568999999988775 23345566999998876321 2222222211 1356777777776543
Q ss_pred cc-------ccCCCccEEEEeccc
Q 027530 139 IK-------AVAPPFDYIIGTDVV 155 (222)
Q Consensus 139 ~~-------~~~~~fD~Ii~~d~~ 155 (222)
.. ..-++.|++|.+--+
T Consensus 70 ~~~~~~~~~~~~g~iD~lv~~ag~ 93 (251)
T PRK12481 70 IDSIVSQAVEVMGHIDILINNAGI 93 (251)
T ss_pred HHHHHHHHHHHcCCCCEEEECCCc
Confidence 21 112468998876543
No 395
>PLN02253 xanthoxin dehydrogenase
Probab=81.68 E-value=5.2 Score=32.67 Aligned_cols=77 Identities=17% Similarity=0.184 Sum_probs=45.7
Q ss_pred CCCCCCeEEEeCCCccHHHHH----HHHhCCEEEEecc-hhhHHHHHHHHHHhhccccccCCCCCCCCCceEEEEeecCC
Q 027530 61 SKLKGKRVIELGAGCGVAGFG----MALLGCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSGNLLGSIQAVELDWGN 135 (222)
Q Consensus 61 ~~~~~~~vLelGcG~G~~~i~----la~~g~~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~v~~~~~d~~~ 135 (222)
..+.++++|=.|+..|+ |.. +++.|++|+++|. ++..+.+.+.+.. ..++.+...|..+
T Consensus 14 ~~l~~k~~lItGas~gI-G~~la~~l~~~G~~v~~~~~~~~~~~~~~~~~~~---------------~~~~~~~~~Dl~d 77 (280)
T PLN02253 14 QRLLGKVALVTGGATGI-GESIVRLFHKHGAKVCIVDLQDDLGQNVCDSLGG---------------EPNVCFFHCDVTV 77 (280)
T ss_pred cccCCCEEEEECCCchH-HHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHhcC---------------CCceEEEEeecCC
Confidence 35678899999976554 433 4456889999986 3333333222210 1356777878776
Q ss_pred Cccccc-------cCCCccEEEEec
Q 027530 136 EDHIKA-------VAPPFDYIIGTD 153 (222)
Q Consensus 136 ~~~~~~-------~~~~fD~Ii~~d 153 (222)
...... .-++.|++|.+-
T Consensus 78 ~~~~~~~~~~~~~~~g~id~li~~A 102 (280)
T PLN02253 78 EDDVSRAVDFTVDKFGTLDIMVNNA 102 (280)
T ss_pred HHHHHHHHHHHHHHhCCCCEEEECC
Confidence 543211 124689988654
No 396
>PRK06113 7-alpha-hydroxysteroid dehydrogenase; Validated
Probab=81.42 E-value=11 Score=30.21 Aligned_cols=81 Identities=21% Similarity=0.277 Sum_probs=47.9
Q ss_pred CCCCCCeEEEeCCCccHHH---HHHHHhCCEEEEecc-hhhHHHHHHHHHHhhccccccCCCCCCCCCceEEEEeecCCC
Q 027530 61 SKLKGKRVIELGAGCGVAG---FGMALLGCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSGNLLGSIQAVELDWGNE 136 (222)
Q Consensus 61 ~~~~~~~vLelGcG~G~~~---i~la~~g~~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~v~~~~~d~~~~ 136 (222)
..+.+++||=.|++.|+-. ..++..|++|+.++. .+.++.+...+... ..++.+...|..+.
T Consensus 7 ~~l~~k~vlVtG~s~gIG~~la~~l~~~G~~vv~~~r~~~~~~~~~~~l~~~--------------~~~~~~~~~D~~~~ 72 (255)
T PRK06113 7 LRLDGKCAIITGAGAGIGKEIAITFATAGASVVVSDINADAANHVVDEIQQL--------------GGQAFACRCDITSE 72 (255)
T ss_pred cCcCCCEEEEECCCchHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHHHhc--------------CCcEEEEEccCCCH
Confidence 3457899999998776533 234456889998886 44444443333221 12456667777765
Q ss_pred cccc-------ccCCCccEEEEeccc
Q 027530 137 DHIK-------AVAPPFDYIIGTDVV 155 (222)
Q Consensus 137 ~~~~-------~~~~~fD~Ii~~d~~ 155 (222)
+... ..-.++|+++.+-..
T Consensus 73 ~~i~~~~~~~~~~~~~~d~li~~ag~ 98 (255)
T PRK06113 73 QELSALADFALSKLGKVDILVNNAGG 98 (255)
T ss_pred HHHHHHHHHHHHHcCCCCEEEECCCC
Confidence 4321 112468988876443
No 397
>PRK07791 short chain dehydrogenase; Provisional
Probab=81.41 E-value=9.2 Score=31.53 Aligned_cols=79 Identities=22% Similarity=0.266 Sum_probs=46.5
Q ss_pred CCCCeEEEeCCCccHHH---HHHHHhCCEEEEecc-h---------hhHHHHHHHHHHhhccccccCCCCCCCCCceEEE
Q 027530 63 LKGKRVIELGAGCGVAG---FGMALLGCNVITTDQ-I---------EVLPLLKRNVEWNTSRISQMNPGSGNLLGSIQAV 129 (222)
Q Consensus 63 ~~~~~vLelGcG~G~~~---i~la~~g~~v~~~D~-~---------~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~v~~~ 129 (222)
++++++|=.|++.|+-. ..+++.|++|+.+|. . +.++.+.+.+... ..++.+.
T Consensus 4 l~~k~~lITGas~GIG~aia~~la~~G~~vii~~~~~~~~~~~~~~~~~~~~~~~l~~~--------------~~~~~~~ 69 (286)
T PRK07791 4 LDGRVVIVTGAGGGIGRAHALAFAAEGARVVVNDIGVGLDGSASGGSAAQAVVDEIVAA--------------GGEAVAN 69 (286)
T ss_pred cCCCEEEEECCCchHHHHHHHHHHHCCCEEEEeeCCccccccccchhHHHHHHHHHHhc--------------CCceEEE
Confidence 46789999999887633 345567899988875 2 3233332323221 1345666
Q ss_pred EeecCCCcccc-------ccCCCccEEEEeccc
Q 027530 130 ELDWGNEDHIK-------AVAPPFDYIIGTDVV 155 (222)
Q Consensus 130 ~~d~~~~~~~~-------~~~~~fD~Ii~~d~~ 155 (222)
..|..+.+... ..-++.|++|.+--+
T Consensus 70 ~~Dv~~~~~v~~~~~~~~~~~g~id~lv~nAG~ 102 (286)
T PRK07791 70 GDDIADWDGAANLVDAAVETFGGLDVLVNNAGI 102 (286)
T ss_pred eCCCCCHHHHHHHHHHHHHhcCCCCEEEECCCC
Confidence 77776654321 112578998876544
No 398
>TIGR02825 B4_12hDH leukotriene B4 12-hydroxydehydrogenase/15-oxo-prostaglandin 13-reductase. Leukotriene B4 12-hydroxydehydrogenase is an NADP-dependent enzyme of arachidonic acid metabolism, responsible for converting leukotriene B4 to the much less active metabolite 12-oxo-leukotriene B4. The BRENDA database lists leukotriene B4 12-hydroxydehydrogenase as one of the synonyms of 2-alkenal reductase (EC 1.3.1.74), while 1.3.1.48 is 15-oxoprostaglandin 13-reductase.
Probab=81.30 E-value=12 Score=31.31 Aligned_cols=40 Identities=28% Similarity=0.317 Sum_probs=26.8
Q ss_pred CCCCCeEEEeCC-C-ccHHHHHHHH-hCCEEEEecc-hhhHHHH
Q 027530 62 KLKGKRVIELGA-G-CGVAGFGMAL-LGCNVITTDQ-IEVLPLL 101 (222)
Q Consensus 62 ~~~~~~vLelGc-G-~G~~~i~la~-~g~~v~~~D~-~~~l~~~ 101 (222)
..+|.+||=.|+ | .|...+.+|+ .|++|++++. ++-.+.+
T Consensus 136 ~~~g~~VLI~ga~g~vG~~aiqlAk~~G~~Vi~~~~s~~~~~~~ 179 (325)
T TIGR02825 136 VKGGETVMVNAAAGAVGSVVGQIAKLKGCKVVGAAGSDEKVAYL 179 (325)
T ss_pred CCCCCEEEEeCCccHHHHHHHHHHHHcCCEEEEEeCCHHHHHHH
Confidence 456789998885 3 3666666665 4889888876 4444444
No 399
>PRK01747 mnmC bifunctional tRNA (mnm(5)s(2)U34)-methyltransferase/FAD-dependent cmnm(5)s(2)U34 oxidoreductase; Reviewed
Probab=81.04 E-value=15 Score=34.48 Aligned_cols=72 Identities=14% Similarity=0.209 Sum_probs=40.3
Q ss_pred eecCCCccc-cccCCCccEEEEec--cccCccCH-HHHHHHHHHhcCCCeEEEEEEEEcChhHHHHHHHHH-hcCCeEEE
Q 027530 131 LDWGNEDHI-KAVAPPFDYIIGTD--VVYAEHLL-EPLLQTIFALSGPKTTILLGYEIRSTSVHEQMLQMW-KSNFNVKL 205 (222)
Q Consensus 131 ~d~~~~~~~-~~~~~~fD~Ii~~d--~~y~~~~~-~~ll~~~~~~l~~~g~~~l~~~~r~~~~~~~f~~~~-~~~~~v~~ 205 (222)
+-|+|..+. +.....||+++.-. +--+++++ ..+++.+.++++|+|++. ++. .. ....+.+ ..||+++.
T Consensus 151 l~~gd~~~~~~~~~~~~d~~~lD~FsP~~np~~W~~~~~~~l~~~~~~~~~~~-t~t-~a----~~vr~~l~~~GF~v~~ 224 (662)
T PRK01747 151 LWFGDANELLPQLDARADAWFLDGFAPAKNPDMWSPNLFNALARLARPGATLA-TFT-SA----GFVRRGLQEAGFTVRK 224 (662)
T ss_pred EEecCHHHHHHhccccccEEEeCCCCCccChhhccHHHHHHHHHHhCCCCEEE-Eee-hH----HHHHHHHHHcCCeeee
Confidence 444554321 22235689988542 22233333 459999999999999764 332 11 1222223 46888876
Q ss_pred ecC
Q 027530 206 VPK 208 (222)
Q Consensus 206 v~~ 208 (222)
.+.
T Consensus 225 ~~~ 227 (662)
T PRK01747 225 VKG 227 (662)
T ss_pred cCC
Confidence 644
No 400
>PRK07102 short chain dehydrogenase; Provisional
Probab=80.98 E-value=9.1 Score=30.40 Aligned_cols=74 Identities=16% Similarity=0.179 Sum_probs=42.3
Q ss_pred CeEEEeCCCccHHHHH----HHHhCCEEEEecc-hhhHHHHHHHHHHhhccccccCCCCCCCCCceEEEEeecCCCcccc
Q 027530 66 KRVIELGAGCGVAGFG----MALLGCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSGNLLGSIQAVELDWGNEDHIK 140 (222)
Q Consensus 66 ~~vLelGcG~G~~~i~----la~~g~~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~ 140 (222)
+++|=.|+..| +|.. +++.|++|+++|. ++-.+...+++.... ..++.+...|..+.....
T Consensus 2 ~~vlItGas~g-iG~~~a~~l~~~G~~Vi~~~r~~~~~~~~~~~~~~~~-------------~~~~~~~~~Dl~~~~~~~ 67 (243)
T PRK07102 2 KKILIIGATSD-IARACARRYAAAGARLYLAARDVERLERLADDLRARG-------------AVAVSTHELDILDTASHA 67 (243)
T ss_pred cEEEEEcCCcH-HHHHHHHHHHhcCCEEEEEeCCHHHHHHHHHHHHHhc-------------CCeEEEEecCCCChHHHH
Confidence 57888886544 3443 4455889999997 443333333333221 236777887777654322
Q ss_pred ----ccCCCccEEEEec
Q 027530 141 ----AVAPPFDYIIGTD 153 (222)
Q Consensus 141 ----~~~~~fD~Ii~~d 153 (222)
.....+|+++.+-
T Consensus 68 ~~~~~~~~~~d~vv~~a 84 (243)
T PRK07102 68 AFLDSLPALPDIVLIAV 84 (243)
T ss_pred HHHHHHhhcCCEEEECC
Confidence 1123579888653
No 401
>PRK08277 D-mannonate oxidoreductase; Provisional
Probab=80.95 E-value=6.3 Score=32.09 Aligned_cols=78 Identities=23% Similarity=0.262 Sum_probs=46.2
Q ss_pred CCCCCeEEEeCCCccH---HHHHHHHhCCEEEEecc-hhhHHHHHHHHHHhhccccccCCCCCCCCCceEEEEeecCCCc
Q 027530 62 KLKGKRVIELGAGCGV---AGFGMALLGCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSGNLLGSIQAVELDWGNED 137 (222)
Q Consensus 62 ~~~~~~vLelGcG~G~---~~i~la~~g~~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~v~~~~~d~~~~~ 137 (222)
.++++++|=.|++.|+ +...+++.|++|++++. .+..+.+.+.+...+ .++.+...|..+..
T Consensus 7 ~~~~k~vlVtGas~giG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~--------------~~~~~~~~Dl~~~~ 72 (278)
T PRK08277 7 SLKGKVAVITGGGGVLGGAMAKELARAGAKVAILDRNQEKAEAVVAEIKAAG--------------GEALAVKADVLDKE 72 (278)
T ss_pred ccCCCEEEEeCCCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcC--------------CeEEEEECCCCCHH
Confidence 4577899999987664 22344456889999997 444444433333221 24666777766543
Q ss_pred cccc-------cCCCccEEEEec
Q 027530 138 HIKA-------VAPPFDYIIGTD 153 (222)
Q Consensus 138 ~~~~-------~~~~fD~Ii~~d 153 (222)
.... .-+++|++|.+-
T Consensus 73 ~v~~~~~~~~~~~g~id~li~~a 95 (278)
T PRK08277 73 SLEQARQQILEDFGPCDILINGA 95 (278)
T ss_pred HHHHHHHHHHHHcCCCCEEEECC
Confidence 3211 124789988763
No 402
>TIGR03206 benzo_BadH 2-hydroxycyclohexanecarboxyl-CoA dehydrogenase. Members of this protein family are the enzyme 2-hydroxycyclohexanecarboxyl-CoA dehydrogenase. The enzymatic properties were confirmed experimentally in Rhodopseudomonas palustris; the enzyme is homotetrameric, and not sensitive to oxygen. This enzyme is part of proposed pathway for degradation of benzoyl-CoA to 3-hydroxypimeloyl-CoA that differs from the analogous in Thauera aromatica. It also may occur in degradation of the non-aromatic compound cyclohexane-1-carboxylate.
Probab=80.77 E-value=7 Score=31.08 Aligned_cols=76 Identities=25% Similarity=0.302 Sum_probs=44.2
Q ss_pred CCCeEEEeCCCccHHHHH----HHHhCCEEEEecc-hhhHHHHHHHHHHhhccccccCCCCCCCCCceEEEEeecCCCcc
Q 027530 64 KGKRVIELGAGCGVAGFG----MALLGCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSGNLLGSIQAVELDWGNEDH 138 (222)
Q Consensus 64 ~~~~vLelGcG~G~~~i~----la~~g~~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~ 138 (222)
+++++|=.|+..| +|.. +++.|++|++++. .+....+...+... ..++.+...|..+.+.
T Consensus 2 ~~~~ilItGas~~-iG~~la~~l~~~g~~v~~~~r~~~~~~~~~~~~~~~--------------~~~~~~~~~d~~~~~~ 66 (250)
T TIGR03206 2 KDKTAIVTGGGGG-IGGATCRRFAEEGAKVAVFDLNREAAEKVAADIRAK--------------GGNAQAFACDITDRDS 66 (250)
T ss_pred CCCEEEEeCCCCh-HHHHHHHHHHHCCCEEEEecCCHHHHHHHHHHHHhc--------------CCcEEEEEcCCCCHHH
Confidence 5688999997654 3433 3445889999987 33444444433322 1356777777766543
Q ss_pred ccc-------cCCCccEEEEecc
Q 027530 139 IKA-------VAPPFDYIIGTDV 154 (222)
Q Consensus 139 ~~~-------~~~~fD~Ii~~d~ 154 (222)
... ..++.|++|.+-.
T Consensus 67 ~~~~~~~~~~~~~~~d~vi~~ag 89 (250)
T TIGR03206 67 VDTAVAAAEQALGPVDVLVNNAG 89 (250)
T ss_pred HHHHHHHHHHHcCCCCEEEECCC
Confidence 211 1246798876653
No 403
>PF07279 DUF1442: Protein of unknown function (DUF1442); InterPro: IPR009902 This family consists of several hypothetical Arabidopsis thaliana proteins of around 225 residues in length. The function of this family is unknown.
Probab=80.68 E-value=27 Score=27.90 Aligned_cols=101 Identities=15% Similarity=0.189 Sum_probs=54.1
Q ss_pred CeEEEeCCCcc----HHHHHHHH--hCCEEEEecc-hhhHHHHHHHHHHhhccccccCCCCCCCCCceEEEEeecCCCc-
Q 027530 66 KRVIELGAGCG----VAGFGMAL--LGCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSGNLLGSIQAVELDWGNED- 137 (222)
Q Consensus 66 ~~vLelGcG~G----~~~i~la~--~g~~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~v~~~~~d~~~~~- 137 (222)
+.++|..|+.| .+++++|. -|.+++.+-. .+.+...++.+...+.. +.++|+. ++..
T Consensus 43 kliVe~~s~g~~~~ttiaLaaAAr~TgGR~vCIvp~~~~~~~~~~~l~~~~~~------------~~vEfvv---g~~~e 107 (218)
T PF07279_consen 43 KLIVEAWSSGGAISTTIALAAAARQTGGRHVCIVPDEQSLSEYKKALGEAGLS------------DVVEFVV---GEAPE 107 (218)
T ss_pred eEEEEEecCCCchHhHHHHHHHHHhcCCeEEEEcCChhhHHHHHHHHhhcccc------------ccceEEe---cCCHH
Confidence 57999976644 23343332 2667666654 44556666666544421 3446554 3321
Q ss_pred cccccCCCccEEEEeccccCccCHH-HHHHHHHHhcCCCeEEEEEEEEcC
Q 027530 138 HIKAVAPPFDYIIGTDVVYAEHLLE-PLLQTIFALSGPKTTILLGYEIRS 186 (222)
Q Consensus 138 ~~~~~~~~fD~Ii~~d~~y~~~~~~-~ll~~~~~~l~~~g~~~l~~~~r~ 186 (222)
.....-...|+++. |+= ..++. .+++.+. ++|.|.+++++....
T Consensus 108 ~~~~~~~~iDF~vV-Dc~--~~d~~~~vl~~~~--~~~~GaVVV~~Na~~ 152 (218)
T PF07279_consen 108 EVMPGLKGIDFVVV-DCK--REDFAARVLRAAK--LSPRGAVVVCYNAFS 152 (218)
T ss_pred HHHhhccCCCEEEE-eCC--chhHHHHHHHHhc--cCCCceEEEEecccc
Confidence 11112356888874 332 23333 5555433 667888888876533
No 404
>COG0863 DNA modification methylase [DNA replication, recombination, and repair]
Probab=80.47 E-value=8.6 Score=31.78 Aligned_cols=49 Identities=20% Similarity=0.266 Sum_probs=41.5
Q ss_pred CCCCCCeEEEeCCCccHHHHHHHHhCCEEEEecc-hhhHHHHHHHHHHhh
Q 027530 61 SKLKGKRVIELGAGCGVAGFGMALLGCNVITTDQ-IEVLPLLKRNVEWNT 109 (222)
Q Consensus 61 ~~~~~~~vLelGcG~G~~~i~la~~g~~v~~~D~-~~~l~~~~~n~~~n~ 109 (222)
....+..|||--+|+|..++++.++|-..++.|+ ++.++.+.+.+....
T Consensus 219 ~s~~~diVlDpf~GsGtt~~aa~~~~r~~ig~e~~~~y~~~~~~r~~~~~ 268 (302)
T COG0863 219 YSFPGDIVLDPFAGSGTTGIAAKNLGRRFIGIEINPEYVEVALKRLQEGL 268 (302)
T ss_pred cCCCCCEEeecCCCCChHHHHHHHcCCceEEEecCHHHHHHHHHHHHhhc
Confidence 3557889999999999999999999999999998 678888877766543
No 405
>PRK06720 hypothetical protein; Provisional
Probab=80.34 E-value=13 Score=28.31 Aligned_cols=80 Identities=24% Similarity=0.281 Sum_probs=46.2
Q ss_pred CCCCeEEEeCCCccH---HHHHHHHhCCEEEEecc-hhhHHHHHHHHHHhhccccccCCCCCCCCCceEEEEeecCCCcc
Q 027530 63 LKGKRVIELGAGCGV---AGFGMALLGCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSGNLLGSIQAVELDWGNEDH 138 (222)
Q Consensus 63 ~~~~~vLelGcG~G~---~~i~la~~g~~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~ 138 (222)
++++.+|=.|.+.|+ +...+++.|++|+.+|. .+.++.+.+.+...+ ..+.+...|..+...
T Consensus 14 l~gk~~lVTGa~~GIG~aia~~l~~~G~~V~l~~r~~~~~~~~~~~l~~~~--------------~~~~~~~~Dl~~~~~ 79 (169)
T PRK06720 14 LAGKVAIVTGGGIGIGRNTALLLAKQGAKVIVTDIDQESGQATVEEITNLG--------------GEALFVSYDMEKQGD 79 (169)
T ss_pred cCCCEEEEecCCChHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhcC--------------CcEEEEEccCCCHHH
Confidence 467889999988765 33345567899999997 344443333333111 234556667665432
Q ss_pred cc-------ccCCCccEEEEecccc
Q 027530 139 IK-------AVAPPFDYIIGTDVVY 156 (222)
Q Consensus 139 ~~-------~~~~~fD~Ii~~d~~y 156 (222)
.. ..-+..|+++.+--++
T Consensus 80 v~~~v~~~~~~~G~iDilVnnAG~~ 104 (169)
T PRK06720 80 WQRVISITLNAFSRIDMLFQNAGLY 104 (169)
T ss_pred HHHHHHHHHHHcCCCCEEEECCCcC
Confidence 21 1124688888774443
No 406
>PRK05872 short chain dehydrogenase; Provisional
Probab=80.20 E-value=8 Score=32.05 Aligned_cols=80 Identities=18% Similarity=0.179 Sum_probs=47.0
Q ss_pred CCCCCCeEEEeCCCccH---HHHHHHHhCCEEEEecc-hhhHHHHHHHHHHhhccccccCCCCCCCCCceEEEEeecCCC
Q 027530 61 SKLKGKRVIELGAGCGV---AGFGMALLGCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSGNLLGSIQAVELDWGNE 136 (222)
Q Consensus 61 ~~~~~~~vLelGcG~G~---~~i~la~~g~~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~v~~~~~d~~~~ 136 (222)
..++++++|=.|++.|+ ++..+++.|++|+.++. .+.++.+.+.+.. ...+.....|+.+.
T Consensus 5 ~~l~gk~vlItGas~gIG~~ia~~l~~~G~~V~~~~r~~~~l~~~~~~l~~---------------~~~~~~~~~Dv~d~ 69 (296)
T PRK05872 5 TSLAGKVVVVTGAARGIGAELARRLHARGAKLALVDLEEAELAALAAELGG---------------DDRVLTVVADVTDL 69 (296)
T ss_pred CCCCCCEEEEECCCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHhcC---------------CCcEEEEEecCCCH
Confidence 34678999999987764 33344556899999987 4444333322210 12345555777765
Q ss_pred cccc-------ccCCCccEEEEeccc
Q 027530 137 DHIK-------AVAPPFDYIIGTDVV 155 (222)
Q Consensus 137 ~~~~-------~~~~~fD~Ii~~d~~ 155 (222)
+... ..-++.|++|.+--+
T Consensus 70 ~~v~~~~~~~~~~~g~id~vI~nAG~ 95 (296)
T PRK05872 70 AAMQAAAEEAVERFGGIDVVVANAGI 95 (296)
T ss_pred HHHHHHHHHHHHHcCCCCEEEECCCc
Confidence 4321 112578999877544
No 407
>PRK08303 short chain dehydrogenase; Provisional
Probab=80.08 E-value=10 Score=31.76 Aligned_cols=33 Identities=27% Similarity=0.409 Sum_probs=24.4
Q ss_pred CCCCCeEEEeCCCccH---HHHHHHHhCCEEEEecc
Q 027530 62 KLKGKRVIELGAGCGV---AGFGMALLGCNVITTDQ 94 (222)
Q Consensus 62 ~~~~~~vLelGcG~G~---~~i~la~~g~~v~~~D~ 94 (222)
.++++++|=.|++.|+ ++..+++.|++|++++.
T Consensus 5 ~l~~k~~lITGgs~GIG~aia~~la~~G~~Vv~~~r 40 (305)
T PRK08303 5 PLRGKVALVAGATRGAGRGIAVELGAAGATVYVTGR 40 (305)
T ss_pred CCCCCEEEEeCCCchHHHHHHHHHHHCCCEEEEEec
Confidence 4578999999998775 23345556899988875
No 408
>PRK07666 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=80.01 E-value=7.7 Score=30.71 Aligned_cols=76 Identities=24% Similarity=0.194 Sum_probs=43.5
Q ss_pred CCCCeEEEeCCCccHHHHHH----HHhCCEEEEecc-hhhHHHHHHHHHHhhccccccCCCCCCCCCceEEEEeecCCCc
Q 027530 63 LKGKRVIELGAGCGVAGFGM----ALLGCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSGNLLGSIQAVELDWGNED 137 (222)
Q Consensus 63 ~~~~~vLelGcG~G~~~i~l----a~~g~~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~v~~~~~d~~~~~ 137 (222)
++++++|=.|+ +|.+|..+ +..|++|++++. ++..+.....+... ..++.+...|..+..
T Consensus 5 ~~~~~vlVtG~-sg~iG~~l~~~L~~~G~~Vi~~~r~~~~~~~~~~~~~~~--------------~~~~~~~~~D~~~~~ 69 (239)
T PRK07666 5 LQGKNALITGA-GRGIGRAVAIALAKEGVNVGLLARTEENLKAVAEEVEAY--------------GVKVVIATADVSDYE 69 (239)
T ss_pred CCCCEEEEEcC-CchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHHh--------------CCeEEEEECCCCCHH
Confidence 45678999996 45555544 345889999987 44333333333221 135666776665543
Q ss_pred cccc-------cCCCccEEEEec
Q 027530 138 HIKA-------VAPPFDYIIGTD 153 (222)
Q Consensus 138 ~~~~-------~~~~fD~Ii~~d 153 (222)
.... ..+..|+||.+-
T Consensus 70 ~~~~~~~~~~~~~~~id~vi~~a 92 (239)
T PRK07666 70 EVTAAIEQLKNELGSIDILINNA 92 (239)
T ss_pred HHHHHHHHHHHHcCCccEEEEcC
Confidence 2210 124689888764
No 409
>cd00755 YgdL_like Family of activating enzymes (E1) of ubiquitin-like proteins related to the E.coli hypothetical protein ygdL. The common reaction mechanism catalyzed by E1-like enzymes begins with a nucleophilic attack of the C-terminal carboxylate of the ubiquitin-like substrate, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of the substrate. The exact function of this family is unknown.
Probab=79.89 E-value=3.5 Score=33.35 Aligned_cols=33 Identities=27% Similarity=0.313 Sum_probs=24.4
Q ss_pred CCCCeEEEeCCCc-cH-HHHHHHHhCC-EEEEecch
Q 027530 63 LKGKRVIELGAGC-GV-AGFGMALLGC-NVITTDQI 95 (222)
Q Consensus 63 ~~~~~vLelGcG~-G~-~~i~la~~g~-~v~~~D~~ 95 (222)
+++.+||=+|||. |. +...|++.|. +++.+|.+
T Consensus 9 L~~~~VlVvG~GGvGs~va~~Lar~GVg~i~LvD~D 44 (231)
T cd00755 9 LRNAHVAVVGLGGVGSWAAEALARSGVGKLTLIDFD 44 (231)
T ss_pred HhCCCEEEECCCHHHHHHHHHHHHcCCCEEEEECCC
Confidence 4567999999994 54 4456777776 69999964
No 410
>cd08294 leukotriene_B4_DH_like 13-PGR is a bifunctional enzyme with delta-13 15-prostaglandin reductase and leukotriene B4 12 hydroxydehydrogenase activity. Prostaglandins and related eicosanoids are metabolized by the oxidation of the 15(S)-hydroxyl group of the NAD+-dependent (type I 15-PGDH) 15-prostaglandin dehydrogenase (15-PGDH) followed by reduction by NADPH/NADH-dependent (type II 15-PGDH) delta-13 15-prostaglandin reductase (13-PGR) to 15-keto- 13,14,-dihydroprostaglandins. 13-PGR is a bifunctional enzyme, since it also has leukotriene B(4) 12-hydroxydehydrogenase activity. These 15-PGDH and related enzymes are members of the medium chain dehydrogenase/reductase family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of ac
Probab=79.86 E-value=9.6 Score=31.69 Aligned_cols=96 Identities=18% Similarity=0.141 Sum_probs=50.5
Q ss_pred CCCCCeEEEeCC-C-ccHHHHHHHH-hCCEEEEecc-hhhHHHHHHHHHHhhccccccCCCCCCCCCceEEEEeecCCCc
Q 027530 62 KLKGKRVIELGA-G-CGVAGFGMAL-LGCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSGNLLGSIQAVELDWGNED 137 (222)
Q Consensus 62 ~~~~~~vLelGc-G-~G~~~i~la~-~g~~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~v~~~~~d~~~~~ 137 (222)
..+|.+||=.|+ | .|...+.+|+ .|++|++++. ++-.+.+++ .+.. .-+.....+|...
T Consensus 141 ~~~g~~vlI~ga~g~vG~~aiqlA~~~G~~vi~~~~s~~~~~~l~~----~Ga~------------~vi~~~~~~~~~~- 203 (329)
T cd08294 141 PKAGETVVVNGAAGAVGSLVGQIAKIKGCKVIGCAGSDDKVAWLKE----LGFD------------AVFNYKTVSLEEA- 203 (329)
T ss_pred CCCCCEEEEecCccHHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHH----cCCC------------EEEeCCCccHHHH-
Confidence 446788988884 3 3666665554 4889888875 444444443 1211 0011111111100
Q ss_pred cccccCCCccEEEEeccccCccCHHHHHHHHHHhcCCCeEEEEE
Q 027530 138 HIKAVAPPFDYIIGTDVVYAEHLLEPLLQTIFALSGPKTTILLG 181 (222)
Q Consensus 138 ~~~~~~~~fD~Ii~~d~~y~~~~~~~ll~~~~~~l~~~g~~~l~ 181 (222)
........+|+|+- ++- ...+....+.++++|+++..
T Consensus 204 v~~~~~~gvd~vld--~~g-----~~~~~~~~~~l~~~G~iv~~ 240 (329)
T cd08294 204 LKEAAPDGIDCYFD--NVG-----GEFSSTVLSHMNDFGRVAVC 240 (329)
T ss_pred HHHHCCCCcEEEEE--CCC-----HHHHHHHHHhhccCCEEEEE
Confidence 00111246888883 331 24567777888999987653
No 411
>PRK06138 short chain dehydrogenase; Provisional
Probab=79.81 E-value=6.7 Score=31.20 Aligned_cols=78 Identities=23% Similarity=0.285 Sum_probs=46.2
Q ss_pred CCCCeEEEeCCCccHHH---HHHHHhCCEEEEecc-hhhHHHHHHHHHHhhccccccCCCCCCCCCceEEEEeecCCCcc
Q 027530 63 LKGKRVIELGAGCGVAG---FGMALLGCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSGNLLGSIQAVELDWGNEDH 138 (222)
Q Consensus 63 ~~~~~vLelGcG~G~~~---i~la~~g~~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~ 138 (222)
++++++|=.||..|+-. ..+++.|++|++++. .+......+.+. . ..++.+...|..+...
T Consensus 3 ~~~k~~lItG~sg~iG~~la~~l~~~G~~v~~~~r~~~~~~~~~~~~~-~--------------~~~~~~~~~D~~~~~~ 67 (252)
T PRK06138 3 LAGRVAIVTGAGSGIGRATAKLFAREGARVVVADRDAEAAERVAAAIA-A--------------GGRAFARQGDVGSAEA 67 (252)
T ss_pred CCCcEEEEeCCCchHHHHHHHHHHHCCCeEEEecCCHHHHHHHHHHHh-c--------------CCeEEEEEcCCCCHHH
Confidence 46789999999655422 234456889999986 333333333332 1 1356777878776543
Q ss_pred ccc-------cCCCccEEEEeccc
Q 027530 139 IKA-------VAPPFDYIIGTDVV 155 (222)
Q Consensus 139 ~~~-------~~~~fD~Ii~~d~~ 155 (222)
... .-+++|+|+.+-..
T Consensus 68 ~~~~~~~i~~~~~~id~vi~~ag~ 91 (252)
T PRK06138 68 VEALVDFVAARWGRLDVLVNNAGF 91 (252)
T ss_pred HHHHHHHHHHHcCCCCEEEECCCC
Confidence 221 12478998876443
No 412
>PRK09260 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=79.61 E-value=22 Score=29.49 Aligned_cols=40 Identities=23% Similarity=0.409 Sum_probs=27.6
Q ss_pred CeEEEeCCCc-cH-HHHHHHHhCCEEEEecc-hhhHHHHHHHH
Q 027530 66 KRVIELGAGC-GV-AGFGMALLGCNVITTDQ-IEVLPLLKRNV 105 (222)
Q Consensus 66 ~~vLelGcG~-G~-~~i~la~~g~~v~~~D~-~~~l~~~~~n~ 105 (222)
++|.=||+|. |. .+..+++.|.+|++.|. ++.++.+.+.+
T Consensus 2 ~~V~VIG~G~mG~~iA~~la~~G~~V~~~d~~~~~~~~~~~~~ 44 (288)
T PRK09260 2 EKLVVVGAGVMGRGIAYVFAVSGFQTTLVDIKQEQLESAQQEI 44 (288)
T ss_pred cEEEEECccHHHHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHH
Confidence 3577788885 32 44555667889999998 56777766543
No 413
>COG3392 Adenine-specific DNA methylase [DNA replication, recombination, and repair]
Probab=79.54 E-value=2.7 Score=34.63 Aligned_cols=36 Identities=31% Similarity=0.370 Sum_probs=32.6
Q ss_pred CCCCCCCeEEEeCCCccHHHHHHHHhCCEEEEecch
Q 027530 60 PSKLKGKRVIELGAGCGVAGFGMALLGCNVITTDQI 95 (222)
Q Consensus 60 ~~~~~~~~vLelGcG~G~~~i~la~~g~~v~~~D~~ 95 (222)
..+.+|+.+-||-+|||++|-.+-+.|..|++-|+.
T Consensus 23 k~~~s~k~f~DiFaGtGVV~~~fkk~~n~iiaNDle 58 (330)
T COG3392 23 KEDLSGKIFCDIFAGTGVVGRFFKKAGNKIIANDLE 58 (330)
T ss_pred hcccCCCeeeeeccCccHHHHHHHHhcchhhhchHH
Confidence 466788999999999999999999999999999974
No 414
>TIGR01832 kduD 2-deoxy-D-gluconate 3-dehydrogenase. This model describes 2-deoxy-D-gluconate 3-dehydrogenase (also called 2-keto-3-deoxygluconate oxidoreductase), a member of the family of short-chain-alcohol dehydrogenases (pfam00106). This protein has been characterized in Erwinia chrysanthemi as an enzyme of pectin degradation.
Probab=79.54 E-value=12 Score=29.65 Aligned_cols=78 Identities=21% Similarity=0.290 Sum_probs=45.6
Q ss_pred CCCCeEEEeCCCccH---HHHHHHHhCCEEEEecchhhHHHHHHHHHHhhccccccCCCCCCCCCceEEEEeecCCCccc
Q 027530 63 LKGKRVIELGAGCGV---AGFGMALLGCNVITTDQIEVLPLLKRNVEWNTSRISQMNPGSGNLLGSIQAVELDWGNEDHI 139 (222)
Q Consensus 63 ~~~~~vLelGcG~G~---~~i~la~~g~~v~~~D~~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~ 139 (222)
++++++|=.|++.|+ +...+++.|++|++++..+. +.+.+.+... ..++.+...|..+....
T Consensus 3 ~~~k~vlItGas~gIG~~ia~~l~~~G~~vi~~~r~~~-~~~~~~~~~~--------------~~~~~~~~~D~~~~~~~ 67 (248)
T TIGR01832 3 LEGKVALVTGANTGLGQGIAVGLAEAGADIVGAGRSEP-SETQQQVEAL--------------GRRFLSLTADLSDIEAI 67 (248)
T ss_pred CCCCEEEEECCCchHHHHHHHHHHHCCCEEEEEcCchH-HHHHHHHHhc--------------CCceEEEECCCCCHHHH
Confidence 578899999997664 22334456889999986331 2222222211 13567777777765432
Q ss_pred c-------ccCCCccEEEEeccc
Q 027530 140 K-------AVAPPFDYIIGTDVV 155 (222)
Q Consensus 140 ~-------~~~~~fD~Ii~~d~~ 155 (222)
. ...+..|++|.+--.
T Consensus 68 ~~~~~~~~~~~~~~d~li~~ag~ 90 (248)
T TIGR01832 68 KALVDSAVEEFGHIDILVNNAGI 90 (248)
T ss_pred HHHHHHHHHHcCCCCEEEECCCC
Confidence 1 112468999876433
No 415
>PF06460 NSP13: Coronavirus NSP13; InterPro: IPR009461 This domain covers the NSP13 region of the coronavirus polyprotein. This protein has the predicted function of an mRNA cap-1 methyltransferase []. The human coronavirus 229E (HCoV-229E) replicase gene-encoded nonstructural protein 13 (nsp13) contains an N-terminal zinc-binding domain and a C-terminal superfamily 1 helicase domain []. All natural ribonucleotides and nucleotides are substrates of nsp13, with ATP, dATP, and GTP being hydrolyzed most efficiently. Using the NTPase active site, HCoV-229E nsp13 also mediates RNA 5'-triphosphatase activity, which may be involved in the capping of viral RNAs.; GO: 0003968 RNA-directed RNA polymerase activity, 0004197 cysteine-type endopeptidase activity, 0008168 methyltransferase activity, 0008233 peptidase activity, 0016817 hydrolase activity, acting on acid anhydrides, 0016896 exoribonuclease activity, producing 5'-phosphomonoesters; PDB: 2XYV_A 2XYR_A 3R24_A 2XYQ_A.
Probab=79.45 E-value=12 Score=30.87 Aligned_cols=117 Identities=21% Similarity=0.252 Sum_probs=54.0
Q ss_pred HHHHHHHhhhccCCCCCCCCCCCCeEEEeCCCc--cH-HHHHHH-Hh---CCEEEEecchhhHHHHHHHHHHhhcccccc
Q 027530 43 VVFVKYLEKNCRKGRFCPSKLKGKRVIELGAGC--GV-AGFGMA-LL---GCNVITTDQIEVLPLLKRNVEWNTSRISQM 115 (222)
Q Consensus 43 ~~la~~l~~~~~~~~~~~~~~~~~~vLelGcG~--G~-~~i~la-~~---g~~v~~~D~~~~l~~~~~n~~~n~~~~~~~ 115 (222)
..|.+|+.... -..-.+.+||-||+|+ |. +|-... +. ++-++-.|+.+.+.-
T Consensus 46 tQLCqYln~~t------laVP~nMrVlHlGAgSdkGvaPGt~VLrqwlP~~ailvDnDi~d~vSD--------------- 104 (299)
T PF06460_consen 46 TQLCQYLNKTT------LAVPHNMRVLHLGAGSDKGVAPGTAVLRQWLPEDAILVDNDIRDYVSD--------------- 104 (299)
T ss_dssp HHHHHHHTTS-----------TT-EEEEES---TTSB-HHHHHHHHHS-TT-EEEEEESS--B-S---------------
T ss_pred HHHHHHhcccc------EeeccCcEEEEecccccCCcCCchHHHHHhCCCCcEEEecchhhhccc---------------
Confidence 36778885421 1223568999999997 53 554444 33 555666665432110
Q ss_pred CCCCCCCCCceEEEEeecCCCccccccCCCccEEEEeccccC-------------ccCHHHHHHHHHHhcCCCeEEEEEE
Q 027530 116 NPGSGNLLGSIQAVELDWGNEDHIKAVAPPFDYIIGTDVVYA-------------EHLLEPLLQTIFALSGPKTTILLGY 182 (222)
Q Consensus 116 ~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~fD~Ii~~d~~y~-------------~~~~~~ll~~~~~~l~~~g~~~l~~ 182 (222)
.... ...|-. . -..+.+||+||+- + |. ..-..-+...++..|+=||.+.+-.
T Consensus 105 --------a~~~-~~~Dc~---t-~~~~~k~DlIiSD-m-Yd~~~k~~~~~n~~~~~fF~yl~~~i~~kLaLGGSvaiKi 169 (299)
T PF06460_consen 105 --------ADQS-IVGDCR---T-YMPPDKFDLIISD-M-YDGRTKNCDGENNSKEGFFTYLCGFIKEKLALGGSVAIKI 169 (299)
T ss_dssp --------SSEE-EES-GG---G-EEESS-EEEEEE------TTS-SS-S------THHHHHHHHHHHHEEEEEEEEEEE
T ss_pred --------cCCc-eecccc---c-cCCCCcccEEEEe-c-ccccccccccccCCccccHHHHHHHHHhhhhcCceEEEEe
Confidence 1112 222221 1 1236799999964 4 42 1224556777788899999987755
Q ss_pred EEcChhHHHHHHHHH
Q 027530 183 EIRSTSVHEQMLQMW 197 (222)
Q Consensus 183 ~~r~~~~~~~f~~~~ 197 (222)
...+- -.+..+..
T Consensus 170 TE~Sw--~~~Lyel~ 182 (299)
T PF06460_consen 170 TEHSW--NAQLYELM 182 (299)
T ss_dssp -SSS----HHHHHHH
T ss_pred ecccc--cHHHHHHH
Confidence 44333 24444443
No 416
>COG4627 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=79.15 E-value=0.42 Score=36.12 Aligned_cols=43 Identities=12% Similarity=0.027 Sum_probs=32.6
Q ss_pred ccCCCccEEEEeccccCc--cCHHHHHHHHHHhcCCCeEEEEEEE
Q 027530 141 AVAPPFDYIIGTDVVYAE--HLLEPLLQTIFALSGPKTTILLGYE 183 (222)
Q Consensus 141 ~~~~~fD~Ii~~d~~y~~--~~~~~ll~~~~~~l~~~g~~~l~~~ 183 (222)
+.+++.|+|.+..++-|. ..-...++.++++|||+|.+-++.+
T Consensus 43 F~dns~d~iyaeHvlEHlt~~Eg~~alkechr~Lrp~G~LriAvP 87 (185)
T COG4627 43 FEDNSVDAIYAEHVLEHLTYDEGTSALKECHRFLRPGGKLRIAVP 87 (185)
T ss_pred CCCcchHHHHHHHHHHHHhHHHHHHHHHHHHHHhCcCcEEEEEcC
Confidence 346789999888777543 2234588999999999999988764
No 417
>PRK12937 short chain dehydrogenase; Provisional
Probab=79.01 E-value=30 Score=27.28 Aligned_cols=78 Identities=21% Similarity=0.173 Sum_probs=43.3
Q ss_pred CCCCeEEEeCCCccHH---HHHHHHhCCEEEEecc-h-hhHHHHHHHHHHhhccccccCCCCCCCCCceEEEEeecCCCc
Q 027530 63 LKGKRVIELGAGCGVA---GFGMALLGCNVITTDQ-I-EVLPLLKRNVEWNTSRISQMNPGSGNLLGSIQAVELDWGNED 137 (222)
Q Consensus 63 ~~~~~vLelGcG~G~~---~i~la~~g~~v~~~D~-~-~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~v~~~~~d~~~~~ 137 (222)
++++++|=.|+..|+- +..+++.|++|+.+.. . ...+...+.+... ..++.+...|..+..
T Consensus 3 ~~~~~vlItG~~~~iG~~la~~l~~~g~~v~~~~~~~~~~~~~~~~~~~~~--------------~~~~~~~~~Dl~~~~ 68 (245)
T PRK12937 3 LSNKVAIVTGASRGIGAAIARRLAADGFAVAVNYAGSAAAADELVAEIEAA--------------GGRAIAVQADVADAA 68 (245)
T ss_pred CCCCEEEEeCCCchHHHHHHHHHHHCCCEEEEecCCCHHHHHHHHHHHHhc--------------CCeEEEEECCCCCHH
Confidence 4678899999865542 2334456888877764 2 2333333333321 135677777776544
Q ss_pred cccc-------cCCCccEEEEecc
Q 027530 138 HIKA-------VAPPFDYIIGTDV 154 (222)
Q Consensus 138 ~~~~-------~~~~fD~Ii~~d~ 154 (222)
.... ..++.|+++.+--
T Consensus 69 ~~~~~~~~~~~~~~~id~vi~~ag 92 (245)
T PRK12937 69 AVTRLFDAAETAFGRIDVLVNNAG 92 (245)
T ss_pred HHHHHHHHHHHHcCCCCEEEECCC
Confidence 3211 1246898887644
No 418
>COG0604 Qor NADPH:quinone reductase and related Zn-dependent oxidoreductases [Energy production and conversion / General function prediction only]
Probab=78.76 E-value=10 Score=32.17 Aligned_cols=98 Identities=21% Similarity=0.173 Sum_probs=49.7
Q ss_pred CCCCCeEEEeCCCc--cHHHHHHHHh-CCEEEEecc-hhhHHHHHHHHHHhhccccccCCCCCCCCCceEEEEeecCCCc
Q 027530 62 KLKGKRVIELGAGC--GVAGFGMALL-GCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSGNLLGSIQAVELDWGNED 137 (222)
Q Consensus 62 ~~~~~~vLelGcG~--G~~~i~la~~-g~~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~v~~~~~d~~~~~ 137 (222)
...|.+||=.|+.. |..++-+|+. |+.++++-. ++-.+.+++ .+.. .-+.+...||.+.-
T Consensus 140 l~~g~~VLV~gaaGgVG~~aiQlAk~~G~~~v~~~~s~~k~~~~~~----lGAd------------~vi~y~~~~~~~~v 203 (326)
T COG0604 140 LKPGETVLVHGAAGGVGSAAIQLAKALGATVVAVVSSSEKLELLKE----LGAD------------HVINYREEDFVEQV 203 (326)
T ss_pred CCCCCEEEEecCCchHHHHHHHHHHHcCCcEEEEecCHHHHHHHHh----cCCC------------EEEcCCcccHHHHH
Confidence 34588999999544 5666666654 656555543 432223222 2211 12223333333211
Q ss_pred cccccCCCccEEEEeccccCccCHHHHHHHHHHhcCCCeEEEEEE
Q 027530 138 HIKAVAPPFDYIIGTDVVYAEHLLEPLLQTIFALSGPKTTILLGY 182 (222)
Q Consensus 138 ~~~~~~~~fD~Ii~~d~~y~~~~~~~ll~~~~~~l~~~g~~~l~~ 182 (222)
........+|+|+-+ .-.+.+....+.|+++|+++...
T Consensus 204 ~~~t~g~gvDvv~D~-------vG~~~~~~~l~~l~~~G~lv~ig 241 (326)
T COG0604 204 RELTGGKGVDVVLDT-------VGGDTFAASLAALAPGGRLVSIG 241 (326)
T ss_pred HHHcCCCCceEEEEC-------CCHHHHHHHHHHhccCCEEEEEe
Confidence 111123469999832 23445555666777778776543
No 419
>PRK07231 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=78.64 E-value=10 Score=30.02 Aligned_cols=78 Identities=26% Similarity=0.304 Sum_probs=46.1
Q ss_pred CCCCeEEEeCCCccHHH---HHHHHhCCEEEEecc-hhhHHHHHHHHHHhhccccccCCCCCCCCCceEEEEeecCCCcc
Q 027530 63 LKGKRVIELGAGCGVAG---FGMALLGCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSGNLLGSIQAVELDWGNEDH 138 (222)
Q Consensus 63 ~~~~~vLelGcG~G~~~---i~la~~g~~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~ 138 (222)
++++++|=.|+..|+-. ..+++.|.+|++++. ++-++.+...+.. + .++.+...|..+...
T Consensus 3 ~~~~~vlItGasg~iG~~l~~~l~~~G~~V~~~~r~~~~~~~~~~~~~~-~--------------~~~~~~~~D~~~~~~ 67 (251)
T PRK07231 3 LEGKVAIVTGASSGIGEGIARRFAAEGARVVVTDRNEEAAERVAAEILA-G--------------GRAIAVAADVSDEAD 67 (251)
T ss_pred cCCcEEEEECCCChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHhc-C--------------CeEEEEECCCCCHHH
Confidence 46788999988655422 234456889999997 4334433333321 1 246677777766543
Q ss_pred ccc-------cCCCccEEEEeccc
Q 027530 139 IKA-------VAPPFDYIIGTDVV 155 (222)
Q Consensus 139 ~~~-------~~~~fD~Ii~~d~~ 155 (222)
... ..+++|+||.+-..
T Consensus 68 ~~~~~~~~~~~~~~~d~vi~~ag~ 91 (251)
T PRK07231 68 VEAAVAAALERFGSVDILVNNAGT 91 (251)
T ss_pred HHHHHHHHHHHhCCCCEEEECCCC
Confidence 321 12468999876543
No 420
>KOG0822 consensus Protein kinase inhibitor [Cell cycle control, cell division, chromosome partitioning]
Probab=78.62 E-value=6.3 Score=35.75 Aligned_cols=97 Identities=14% Similarity=0.105 Sum_probs=64.4
Q ss_pred CeEEEeCCCccHHHHHHH---Hh---CCEEEEecc-hhhHHHHHH-HHHHhhccccccCCCCCCCCCceEEEEeecCCCc
Q 027530 66 KRVIELGAGCGVAGFGMA---LL---GCNVITTDQ-IEVLPLLKR-NVEWNTSRISQMNPGSGNLLGSIQAVELDWGNED 137 (222)
Q Consensus 66 ~~vLelGcG~G~~~i~la---~~---g~~v~~~D~-~~~l~~~~~-n~~~n~~~~~~~~~~~~~~~~~v~~~~~d~~~~~ 137 (222)
..|+=+|+|-|-+.-... .. ..++++++. +.++..++. |.+ .+..+|+++..|.....
T Consensus 369 tVimvlGaGRGPLv~~~lkaa~~~~RkVklyavEKNPNAivtL~~~n~~--------------~W~~~Vtii~~DMR~w~ 434 (649)
T KOG0822|consen 369 TVIMVLGAGRGPLVDASLKAAEETDRKVKLYAVEKNPNAIVTLQNRNFE--------------CWDNRVTIISSDMRKWN 434 (649)
T ss_pred EEEEEecCCCccHHHHHHHHHHHhcCceEEEEEecCcchhhhhhhhchh--------------hhcCeeEEEeccccccC
Confidence 357899999996654333 32 235899997 776665543 433 23568888887776654
Q ss_pred cccccCCCccEEEEe--ccccCccCHHHHHHHHHHhcCCCeEEE
Q 027530 138 HIKAVAPPFDYIIGT--DVVYAEHLLEPLLQTIFALSGPKTTIL 179 (222)
Q Consensus 138 ~~~~~~~~fD~Ii~~--d~~y~~~~~~~ll~~~~~~l~~~g~~~ 179 (222)
. +.++.|++|+- ..+=+.+.-+.-+.-+.++|||.|+.+
T Consensus 435 a---p~eq~DI~VSELLGSFGDNELSPECLDG~q~fLkpdgIsI 475 (649)
T KOG0822|consen 435 A---PREQADIIVSELLGSFGDNELSPECLDGAQKFLKPDGISI 475 (649)
T ss_pred C---chhhccchHHHhhccccCccCCHHHHHHHHhhcCCCceEc
Confidence 2 24789998743 222234556778999999999998764
No 421
>PRK07774 short chain dehydrogenase; Provisional
Probab=78.59 E-value=9.7 Score=30.28 Aligned_cols=78 Identities=23% Similarity=0.293 Sum_probs=44.3
Q ss_pred CCCCeEEEeCCCccHHHHHHH----HhCCEEEEecc-hhhHHHHHHHHHHhhccccccCCCCCCCCCceEEEEeecCCCc
Q 027530 63 LKGKRVIELGAGCGVAGFGMA----LLGCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSGNLLGSIQAVELDWGNED 137 (222)
Q Consensus 63 ~~~~~vLelGcG~G~~~i~la----~~g~~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~v~~~~~d~~~~~ 137 (222)
.+++++|=.|+.. .+|..++ +.|++|++++. ++..+.+.+.+... ..++.....|..+..
T Consensus 4 ~~~k~vlItGasg-~iG~~la~~l~~~g~~vi~~~r~~~~~~~~~~~~~~~--------------~~~~~~~~~Dl~~~~ 68 (250)
T PRK07774 4 FDDKVAIVTGAAG-GIGQAYAEALAREGASVVVADINAEGAERVAKQIVAD--------------GGTAIAVQVDVSDPD 68 (250)
T ss_pred cCCCEEEEECCCc-hHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhc--------------CCcEEEEEcCCCCHH
Confidence 4678899888544 4444444 56889999997 33444443333311 124455666766544
Q ss_pred ccc-------ccCCCccEEEEeccc
Q 027530 138 HIK-------AVAPPFDYIIGTDVV 155 (222)
Q Consensus 138 ~~~-------~~~~~fD~Ii~~d~~ 155 (222)
... ...++.|+||.+-.+
T Consensus 69 ~~~~~~~~~~~~~~~id~vi~~ag~ 93 (250)
T PRK07774 69 SAKAMADATVSAFGGIDYLVNNAAI 93 (250)
T ss_pred HHHHHHHHHHHHhCCCCEEEECCCC
Confidence 321 012468999876554
No 422
>PRK07904 short chain dehydrogenase; Provisional
Probab=78.26 E-value=10 Score=30.67 Aligned_cols=77 Identities=10% Similarity=0.027 Sum_probs=45.3
Q ss_pred CCCeEEEeCCCccHHHH---HHHHhC-CEEEEecc-hh-hHHHHHHHHHHhhccccccCCCCCCCCCceEEEEeecCCCc
Q 027530 64 KGKRVIELGAGCGVAGF---GMALLG-CNVITTDQ-IE-VLPLLKRNVEWNTSRISQMNPGSGNLLGSIQAVELDWGNED 137 (222)
Q Consensus 64 ~~~~vLelGcG~G~~~i---~la~~g-~~v~~~D~-~~-~l~~~~~n~~~n~~~~~~~~~~~~~~~~~v~~~~~d~~~~~ 137 (222)
.+++||=.|++.|+-.. .+++.| ++|++++. ++ .++.+.+.+...+ ..++.+..+|..+..
T Consensus 7 ~~~~vlItGas~giG~~la~~l~~~gg~~V~~~~r~~~~~~~~~~~~l~~~~-------------~~~v~~~~~D~~~~~ 73 (253)
T PRK07904 7 NPQTILLLGGTSEIGLAICERYLKNAPARVVLAALPDDPRRDAAVAQMKAAG-------------ASSVEVIDFDALDTD 73 (253)
T ss_pred CCcEEEEEcCCcHHHHHHHHHHHhcCCCeEEEEeCCcchhHHHHHHHHHhcC-------------CCceEEEEecCCChH
Confidence 45789999997765322 233454 78999986 33 2555444444322 125778888887654
Q ss_pred ccc------ccCCCccEEEEec
Q 027530 138 HIK------AVAPPFDYIIGTD 153 (222)
Q Consensus 138 ~~~------~~~~~fD~Ii~~d 153 (222)
... ...+..|+++.+-
T Consensus 74 ~~~~~~~~~~~~g~id~li~~a 95 (253)
T PRK07904 74 SHPKVIDAAFAGGDVDVAIVAF 95 (253)
T ss_pred HHHHHHHHHHhcCCCCEEEEee
Confidence 311 0125799887543
No 423
>PRK12939 short chain dehydrogenase; Provisional
Probab=78.13 E-value=12 Score=29.57 Aligned_cols=77 Identities=22% Similarity=0.245 Sum_probs=44.7
Q ss_pred CCCCCeEEEeCCCccHHHHHH----HHhCCEEEEecc-hhhHHHHHHHHHHhhccccccCCCCCCCCCceEEEEeecCCC
Q 027530 62 KLKGKRVIELGAGCGVAGFGM----ALLGCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSGNLLGSIQAVELDWGNE 136 (222)
Q Consensus 62 ~~~~~~vLelGcG~G~~~i~l----a~~g~~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~v~~~~~d~~~~ 136 (222)
..+++++|=.|++. .+|..+ ++.|++|++++. ++.+....+.++.. ..++.+...|..+.
T Consensus 4 ~~~~~~vlItGa~g-~iG~~la~~l~~~G~~v~~~~r~~~~~~~~~~~~~~~--------------~~~~~~~~~Dl~~~ 68 (250)
T PRK12939 4 NLAGKRALVTGAAR-GLGAAFAEALAEAGATVAFNDGLAAEARELAAALEAA--------------GGRAHAIAADLADP 68 (250)
T ss_pred CCCCCEEEEeCCCC-hHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHhc--------------CCcEEEEEccCCCH
Confidence 35678999888754 444444 446889998886 44444333333211 13567777777765
Q ss_pred ccccc-------cCCCccEEEEec
Q 027530 137 DHIKA-------VAPPFDYIIGTD 153 (222)
Q Consensus 137 ~~~~~-------~~~~fD~Ii~~d 153 (222)
+.... .-++.|+|+.+-
T Consensus 69 ~~~~~~~~~~~~~~~~id~vi~~a 92 (250)
T PRK12939 69 ASVQRFFDAAAAALGGLDGLVNNA 92 (250)
T ss_pred HHHHHHHHHHHHHcCCCCEEEECC
Confidence 43211 114689988664
No 424
>cd01080 NAD_bind_m-THF_DH_Cyclohyd NADP binding domain of methylene-tetrahydrofolate dehydrogenase/cyclohydrolase. NADP binding domain of the Methylene-Tetrahydrofolate Dehydrogenase/cyclohydrolase (m-THF DH/cyclohydrolase) bifunctional enzyme. Tetrahydrofolate is a versatile carrier of activated one-carbon units. The major one-carbon folate donors are N-5 methyltetrahydrofolate, N5,N10-m-THF, and N10-formayltetrahydrofolate. The oxidation of metabolic intermediate m-THF to m-THF requires the enzyme m-THF DH. In addition, most DHs also have an associated cyclohydrolase activity which catalyzes its hydrolysis to N10-formyltetrahydrofolate. m-THF DH is typically found as part of a multifunctional protein in eukaryotes. NADP-dependent m-THF DH in mammals, birds and yeast are components of a trifunctional enzyme with DH, cyclohydrolase, and synthetase activities. Certain eukaryotic cells also contain homodimeric bifunctional DH/cyclodrolase form. In bacteria, monofucntional DH, as well a
Probab=78.07 E-value=5.6 Score=30.46 Aligned_cols=34 Identities=21% Similarity=0.255 Sum_probs=27.2
Q ss_pred CCCCCCeEEEeCCC--ccH-HHHHHHHhCCEEEEecc
Q 027530 61 SKLKGKRVIELGAG--CGV-AGFGMALLGCNVITTDQ 94 (222)
Q Consensus 61 ~~~~~~~vLelGcG--~G~-~~i~la~~g~~v~~~D~ 94 (222)
..++|++||=+|+| .|. ..-.|...|++|+.++.
T Consensus 40 ~~l~gk~vlViG~G~~~G~~~a~~L~~~g~~V~v~~r 76 (168)
T cd01080 40 IDLAGKKVVVVGRSNIVGKPLAALLLNRNATVTVCHS 76 (168)
T ss_pred CCCCCCEEEEECCcHHHHHHHHHHHhhCCCEEEEEEC
Confidence 46799999999999 377 55666677889888885
No 425
>PRK07576 short chain dehydrogenase; Provisional
Probab=77.99 E-value=15 Score=29.81 Aligned_cols=78 Identities=18% Similarity=0.206 Sum_probs=44.0
Q ss_pred CCCCCeEEEeCCCccHHH---HHHHHhCCEEEEecc-hhhHHHHHHHHHHhhccccccCCCCCCCCCceEEEEeecCCCc
Q 027530 62 KLKGKRVIELGAGCGVAG---FGMALLGCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSGNLLGSIQAVELDWGNED 137 (222)
Q Consensus 62 ~~~~~~vLelGcG~G~~~---i~la~~g~~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~v~~~~~d~~~~~ 137 (222)
.++++++|=.|++.|+-. ..++..|++|+++|. ++-++...+.+... ..++.+..+|..+..
T Consensus 6 ~~~~k~ilItGasggIG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~--------------~~~~~~~~~Dv~~~~ 71 (264)
T PRK07576 6 DFAGKNVVVVGGTSGINLGIAQAFARAGANVAVASRSQEKVDAAVAQLQQA--------------GPEGLGVSADVRDYA 71 (264)
T ss_pred cCCCCEEEEECCCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHHh--------------CCceEEEECCCCCHH
Confidence 356789999997554322 234456889999997 44333333333221 124566777776543
Q ss_pred ccc-------ccCCCccEEEEec
Q 027530 138 HIK-------AVAPPFDYIIGTD 153 (222)
Q Consensus 138 ~~~-------~~~~~fD~Ii~~d 153 (222)
... ...++.|++|.+-
T Consensus 72 ~i~~~~~~~~~~~~~iD~vi~~a 94 (264)
T PRK07576 72 AVEAAFAQIADEFGPIDVLVSGA 94 (264)
T ss_pred HHHHHHHHHHHHcCCCCEEEECC
Confidence 221 1124689988653
No 426
>PRK08416 7-alpha-hydroxysteroid dehydrogenase; Provisional
Probab=77.89 E-value=17 Score=29.32 Aligned_cols=80 Identities=20% Similarity=0.238 Sum_probs=47.3
Q ss_pred CCCCCCeEEEeCCCccH---HHHHHHHhCCEEEEecc--hhhHHHHHHHHHHhhccccccCCCCCCCCCceEEEEeecCC
Q 027530 61 SKLKGKRVIELGAGCGV---AGFGMALLGCNVITTDQ--IEVLPLLKRNVEWNTSRISQMNPGSGNLLGSIQAVELDWGN 135 (222)
Q Consensus 61 ~~~~~~~vLelGcG~G~---~~i~la~~g~~v~~~D~--~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~v~~~~~d~~~ 135 (222)
..++++++|=.|++.|+ ++..+++.|++|+++.. ++.++...+.++... ..++.+...|..+
T Consensus 4 ~~l~~k~vlItGas~gIG~~ia~~l~~~G~~v~~~~~~~~~~~~~~~~~~~~~~-------------~~~~~~~~~D~~~ 70 (260)
T PRK08416 4 NEMKGKTLVISGGTRGIGKAIVYEFAQSGVNIAFTYNSNVEEANKIAEDLEQKY-------------GIKAKAYPLNILE 70 (260)
T ss_pred cccCCCEEEEeCCCchHHHHHHHHHHHCCCEEEEEcCCCHHHHHHHHHHHHHhc-------------CCceEEEEcCCCC
Confidence 34578999999988775 33445567999888753 333443333332211 1356777777776
Q ss_pred Ccccc-------ccCCCccEEEEec
Q 027530 136 EDHIK-------AVAPPFDYIIGTD 153 (222)
Q Consensus 136 ~~~~~-------~~~~~fD~Ii~~d 153 (222)
.+... ..-+++|++|.+-
T Consensus 71 ~~~~~~~~~~~~~~~g~id~lv~nA 95 (260)
T PRK08416 71 PETYKELFKKIDEDFDRVDFFISNA 95 (260)
T ss_pred HHHHHHHHHHHHHhcCCccEEEECc
Confidence 54321 1124689888764
No 427
>PLN02896 cinnamyl-alcohol dehydrogenase
Probab=77.74 E-value=36 Score=28.90 Aligned_cols=77 Identities=14% Similarity=0.021 Sum_probs=43.1
Q ss_pred CCCCCeEEEeCCCccHHHHHHHH----hCCEEEEecc-hhhHHHHHHHHHHhhccccccCCCCCCCCCceEEEEeecCCC
Q 027530 62 KLKGKRVIELGAGCGVAGFGMAL----LGCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSGNLLGSIQAVELDWGNE 136 (222)
Q Consensus 62 ~~~~~~vLelGcG~G~~~i~la~----~g~~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~v~~~~~d~~~~ 136 (222)
...+++||=.|+ +|.+|..+++ .|.+|++++. .+........... ..++.+...|..+.
T Consensus 7 ~~~~~~vLVtG~-~GfIG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~---------------~~~~~~~~~Dl~~~ 70 (353)
T PLN02896 7 ESATGTYCVTGA-TGYIGSWLVKLLLQRGYTVHATLRDPAKSLHLLSKWKE---------------GDRLRLFRADLQEE 70 (353)
T ss_pred ccCCCEEEEECC-CcHHHHHHHHHHHHCCCEEEEEeCChHHHHHHHHhhcc---------------CCeEEEEECCCCCH
Confidence 446788998885 6777766554 4889998875 3211111111110 13567777777655
Q ss_pred ccccccCCCccEEEEecc
Q 027530 137 DHIKAVAPPFDYIIGTDV 154 (222)
Q Consensus 137 ~~~~~~~~~fD~Ii~~d~ 154 (222)
......-..+|.||-.-.
T Consensus 71 ~~~~~~~~~~d~Vih~A~ 88 (353)
T PLN02896 71 GSFDEAVKGCDGVFHVAA 88 (353)
T ss_pred HHHHHHHcCCCEEEECCc
Confidence 433222235788875543
No 428
>PRK06522 2-dehydropantoate 2-reductase; Reviewed
Probab=77.74 E-value=32 Score=28.39 Aligned_cols=96 Identities=28% Similarity=0.352 Sum_probs=53.1
Q ss_pred eEEEeCCCc--cHHHHHHHHhCCEEEEecc-hhhHHHHHHHHHHhhccccccCCCCCCCCCceEEEEeecCCCccccccC
Q 027530 67 RVIELGAGC--GVAGFGMALLGCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSGNLLGSIQAVELDWGNEDHIKAVA 143 (222)
Q Consensus 67 ~vLelGcG~--G~~~i~la~~g~~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~ 143 (222)
+|+=+|+|. +.++..+++.|.+|++++. ++.++.+++ ++.... ...... ..... .+... .
T Consensus 2 ~I~IiG~G~~G~~~a~~L~~~g~~V~~~~r~~~~~~~~~~----~g~~~~---------~~~~~~-~~~~~--~~~~~-~ 64 (304)
T PRK06522 2 KIAILGAGAIGGLFGAALAQAGHDVTLVARRGAHLDALNE----NGLRLE---------DGEITV-PVLAA--DDPAE-L 64 (304)
T ss_pred EEEEECCCHHHHHHHHHHHhCCCeEEEEECChHHHHHHHH----cCCccc---------CCceee-cccCC--CChhH-c
Confidence 577789886 3456666777889999997 444443332 232110 001110 00000 11111 2
Q ss_pred CCccEEEEeccccCccCHHHHHHHHHHhcCCCeEEEEEE
Q 027530 144 PPFDYIIGTDVVYAEHLLEPLLQTIFALSGPKTTILLGY 182 (222)
Q Consensus 144 ~~fD~Ii~~d~~y~~~~~~~ll~~~~~~l~~~g~~~l~~ 182 (222)
..+|+|+.+-.-+ ....+++.+...+.++..+++..
T Consensus 65 ~~~d~vila~k~~---~~~~~~~~l~~~l~~~~~iv~~~ 100 (304)
T PRK06522 65 GPQDLVILAVKAY---QLPAALPSLAPLLGPDTPVLFLQ 100 (304)
T ss_pred CCCCEEEEecccc---cHHHHHHHHhhhcCCCCEEEEec
Confidence 6799988764432 46778888888888776655443
No 429
>PRK09908 xanthine dehydrogenase subunit XdhC; Provisional
Probab=77.72 E-value=3.3 Score=31.43 Aligned_cols=33 Identities=21% Similarity=0.339 Sum_probs=26.5
Q ss_pred CCCCcceEEEeEcCeEEEEeeCCCCccccccccchHHHHHHHHhh
Q 027530 7 NSPSTSVINLEVLGHQLQFSQDPNSKHLGTTVWDASVVFVKYLEK 51 (222)
Q Consensus 7 ~~~~~~~~~~~~~~~~~~i~q~~~~~~~g~~~W~~~~~la~~l~~ 51 (222)
|+|+...+++.++|..+++.-+| ...|.++|.+
T Consensus 2 ~~~~~~~i~~~vNG~~~~~~~~~------------~~~Ll~~LR~ 34 (159)
T PRK09908 2 NHSETITIECTINGMPFQLHAAP------------GTPLSELLRE 34 (159)
T ss_pred CCCCceeEEEEECCEEEEEecCC------------CCcHHHHHHH
Confidence 67888889999999999986555 4578888874
No 430
>PF01795 Methyltransf_5: MraW methylase family; InterPro: IPR002903 This is a family of S-adenosyl-L-methionine-dependent methyltransferases, which are found primarily, though not exclusively, in bacteria. The Escherichia coli protein is essential and has been linked to peptidoglycan biosynthesis [, ].; GO: 0008168 methyltransferase activity; PDB: 1N2X_A 1M6Y_A 1WG8_A 3TKA_A.
Probab=77.55 E-value=1.7 Score=36.68 Aligned_cols=45 Identities=18% Similarity=0.134 Sum_probs=32.0
Q ss_pred CCCCCeEEEeCCCccHHHHHHHHh--CCEEEEecc-hhhHHHHHHHHH
Q 027530 62 KLKGKRVIELGAGCGVAGFGMALL--GCNVITTDQ-IEVLPLLKRNVE 106 (222)
Q Consensus 62 ~~~~~~vLelGcG~G~~~i~la~~--g~~v~~~D~-~~~l~~~~~n~~ 106 (222)
..++..++|.--|.|--+..+... +.+|+++|. +++++.+++++.
T Consensus 18 ~~~~g~~vD~T~G~GGHS~aiL~~~~~~~li~~DrD~~a~~~a~~~l~ 65 (310)
T PF01795_consen 18 PKPGGIYVDCTFGGGGHSKAILEKLPNGRLIGIDRDPEALERAKERLK 65 (310)
T ss_dssp --TT-EEEETT-TTSHHHHHHHHT-TT-EEEEEES-HHHHHHHHCCTC
T ss_pred cCCCceEEeecCCcHHHHHHHHHhCCCCeEEEecCCHHHHHHHHHHHh
Confidence 346679999999998777666654 468999999 679988887665
No 431
>PRK14106 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=77.43 E-value=50 Score=29.13 Aligned_cols=33 Identities=45% Similarity=0.664 Sum_probs=23.5
Q ss_pred CCCCeEEEeCCCc-cH-HHHHHHHhCCEEEEecch
Q 027530 63 LKGKRVIELGAGC-GV-AGFGMALLGCNVITTDQI 95 (222)
Q Consensus 63 ~~~~~vLelGcG~-G~-~~i~la~~g~~v~~~D~~ 95 (222)
.++++|+=+|+|. |+ .+..++..|++|+++|..
T Consensus 3 ~~~k~v~iiG~g~~G~~~A~~l~~~G~~V~~~d~~ 37 (450)
T PRK14106 3 LKGKKVLVVGAGVSGLALAKFLKKLGAKVILTDEK 37 (450)
T ss_pred cCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCC
Confidence 4678999999886 32 223344569999999973
No 432
>PRK06940 short chain dehydrogenase; Provisional
Probab=77.38 E-value=34 Score=27.94 Aligned_cols=74 Identities=24% Similarity=0.314 Sum_probs=41.9
Q ss_pred CeEEEeCCCccHHHHHHHH---hCCEEEEecc-hhhHHHHHHHHHHhhccccccCCCCCCCCCceEEEEeecCCCcccc-
Q 027530 66 KRVIELGAGCGVAGFGMAL---LGCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSGNLLGSIQAVELDWGNEDHIK- 140 (222)
Q Consensus 66 ~~vLelGcG~G~~~i~la~---~g~~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~- 140 (222)
+.+|=-|+| | +|..+++ .|++|+++|. ++.++.+.+.+...+ .++.+...|..+.+...
T Consensus 3 k~~lItGa~-g-IG~~la~~l~~G~~Vv~~~r~~~~~~~~~~~l~~~~--------------~~~~~~~~Dv~d~~~i~~ 66 (275)
T PRK06940 3 EVVVVIGAG-G-IGQAIARRVGAGKKVLLADYNEENLEAAAKTLREAG--------------FDVSTQEVDVSSRESVKA 66 (275)
T ss_pred CEEEEECCC-h-HHHHHHHHHhCCCEEEEEeCCHHHHHHHHHHHHhcC--------------CeEEEEEeecCCHHHHHH
Confidence 566666764 4 5555443 4788999987 444443333332211 25667777877654321
Q ss_pred -----ccCCCccEEEEeccc
Q 027530 141 -----AVAPPFDYIIGTDVV 155 (222)
Q Consensus 141 -----~~~~~fD~Ii~~d~~ 155 (222)
...++.|++|.+--+
T Consensus 67 ~~~~~~~~g~id~li~nAG~ 86 (275)
T PRK06940 67 LAATAQTLGPVTGLVHTAGV 86 (275)
T ss_pred HHHHHHhcCCCCEEEECCCc
Confidence 112568999876544
No 433
>cd08237 ribitol-5-phosphate_DH ribitol-5-phosphate dehydrogenase. NAD-linked ribitol-5-phosphate dehydrogenase, a member of the MDR/zinc-dependent alcohol dehydrogenase-like family, oxidizes the phosphate ester of ribitol-5-phosphate to xylulose-5-phosphate of the pentose phosphate pathway. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (
Probab=77.12 E-value=5 Score=34.08 Aligned_cols=90 Identities=16% Similarity=0.038 Sum_probs=51.8
Q ss_pred CCCCeEEEeCCCc-cHHHHHHHH--hC-CEEEEecc-hhhHHHHHHHHHHhhccccccCCCCCCCCCceEEEEeecCCCc
Q 027530 63 LKGKRVIELGAGC-GVAGFGMAL--LG-CNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSGNLLGSIQAVELDWGNED 137 (222)
Q Consensus 63 ~~~~~vLelGcG~-G~~~i~la~--~g-~~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~v~~~~~d~~~~~ 137 (222)
.+|.+||=+|||. |+..+.+++ .| ++|+++|. ++-++.+++ .+. .... -++.
T Consensus 162 ~~g~~VlV~G~G~vGl~~~~~a~~~~g~~~vi~~~~~~~k~~~a~~----~~~---------------~~~~-~~~~--- 218 (341)
T cd08237 162 KDRNVIGVWGDGNLGYITALLLKQIYPESKLVVFGKHQEKLDLFSF----ADE---------------TYLI-DDIP--- 218 (341)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHhcCCCcEEEEeCcHhHHHHHhh----cCc---------------eeeh-hhhh---
Confidence 4688999999986 777666555 34 47999997 445555543 110 0000 0111
Q ss_pred cccccCCCccEEEEeccccCccCHHHHHHHHHHhcCCCeEEEEEE
Q 027530 138 HIKAVAPPFDYIIGTDVVYAEHLLEPLLQTIFALSGPKTTILLGY 182 (222)
Q Consensus 138 ~~~~~~~~fD~Ii~~d~~y~~~~~~~ll~~~~~~l~~~g~~~l~~ 182 (222)
....+|+|+= +.= .......+....++++++|++++..
T Consensus 219 ----~~~g~d~viD--~~G-~~~~~~~~~~~~~~l~~~G~iv~~G 256 (341)
T cd08237 219 ----EDLAVDHAFE--CVG-GRGSQSAINQIIDYIRPQGTIGLMG 256 (341)
T ss_pred ----hccCCcEEEE--CCC-CCccHHHHHHHHHhCcCCcEEEEEe
Confidence 1124888873 221 0113456677778899999987654
No 434
>PRK07677 short chain dehydrogenase; Provisional
Probab=77.07 E-value=15 Score=29.44 Aligned_cols=75 Identities=27% Similarity=0.307 Sum_probs=43.4
Q ss_pred CCeEEEeCCCccHH---HHHHHHhCCEEEEecc-hhhHHHHHHHHHHhhccccccCCCCCCCCCceEEEEeecCCCcccc
Q 027530 65 GKRVIELGAGCGVA---GFGMALLGCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSGNLLGSIQAVELDWGNEDHIK 140 (222)
Q Consensus 65 ~~~vLelGcG~G~~---~i~la~~g~~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~ 140 (222)
|+++|=.|++.|+- +..+++.|++|++++. .+.++.+.+.+... ..++.+...|..+.....
T Consensus 1 ~k~~lItG~s~giG~~ia~~l~~~G~~Vi~~~r~~~~~~~~~~~~~~~--------------~~~~~~~~~D~~~~~~~~ 66 (252)
T PRK07677 1 EKVVIITGGSSGMGKAMAKRFAEEGANVVITGRTKEKLEEAKLEIEQF--------------PGQVLTVQMDVRNPEDVQ 66 (252)
T ss_pred CCEEEEeCCCChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhc--------------CCcEEEEEecCCCHHHHH
Confidence 46888889877642 2334456889999987 33444443333321 135667777766543221
Q ss_pred -------ccCCCccEEEEec
Q 027530 141 -------AVAPPFDYIIGTD 153 (222)
Q Consensus 141 -------~~~~~fD~Ii~~d 153 (222)
..-++.|++|.+-
T Consensus 67 ~~~~~~~~~~~~id~lI~~a 86 (252)
T PRK07677 67 KMVEQIDEKFGRIDALINNA 86 (252)
T ss_pred HHHHHHHHHhCCccEEEECC
Confidence 0124689988654
No 435
>cd05278 FDH_like Formaldehyde dehydrogenases. Formaldehyde dehydrogenase (FDH) is a member of the zinc-dependent/medium chain alcohol dehydrogenase family. Formaldehyde dehydrogenase (aka ADH3) may be the ancestral form of alcohol dehydrogenase, which evolved to detoxify formaldehyde. This CD contains glutathione dependant FDH, glutathione independent FDH, and related alcohol dehydrogenases. FDH converts formaldehyde and NAD(P) to formate and NAD(P)H. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. Unlike typical FDH, Pseudomonas putida aldehyde-dismutating FDH (PFDH) is glutathione-independent. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typicall
Probab=77.04 E-value=9.5 Score=32.03 Aligned_cols=40 Identities=38% Similarity=0.491 Sum_probs=24.5
Q ss_pred CCCCeEEEeCCCc-cHHHHHHHH-hCC-EEEEecc-hhhHHHHH
Q 027530 63 LKGKRVIELGAGC-GVAGFGMAL-LGC-NVITTDQ-IEVLPLLK 102 (222)
Q Consensus 63 ~~~~~vLelGcG~-G~~~i~la~-~g~-~v~~~D~-~~~l~~~~ 102 (222)
.++.+||-.|+|. |...+.+|+ .|. .|++++. ++..+.++
T Consensus 166 ~~~~~VlI~g~g~vg~~~iqlak~~g~~~v~~~~~~~~~~~~~~ 209 (347)
T cd05278 166 KPGSTVAVIGAGPVGLCAVAGARLLGAARIIAVDSNPERLDLAK 209 (347)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEEeCCHHHHHHHH
Confidence 3577888888753 555555554 374 7888876 33444443
No 436
>cd08285 NADP_ADH NADP(H)-dependent alcohol dehydrogenases. This group is predominated by atypical alcohol dehydrogenases; they exist as tetramers and exhibit specificity for NADP(H) as a cofactor in the interconversion of alcohols and aldehydes, or ketones. Like other zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), tetrameric ADHs have a catalytic zinc that resides between the catalytic and NAD(H)binding domains; however, they do not have and a structural zinc in a lobe of the catalytic domain. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit.
Probab=77.01 E-value=7.7 Score=32.85 Aligned_cols=41 Identities=24% Similarity=0.285 Sum_probs=26.6
Q ss_pred CCCCCeEEEeCCCc-cHHHHHHHH-hCC-EEEEecc-hhhHHHHH
Q 027530 62 KLKGKRVIELGAGC-GVAGFGMAL-LGC-NVITTDQ-IEVLPLLK 102 (222)
Q Consensus 62 ~~~~~~vLelGcG~-G~~~i~la~-~g~-~v~~~D~-~~~l~~~~ 102 (222)
..++++||=.|+|. |...+.+|+ .|. .|+++|. ++-.+.++
T Consensus 164 ~~~g~~vlI~g~g~iG~~~~~lak~~G~~~v~~~~~~~~~~~~~~ 208 (351)
T cd08285 164 IKLGDTVAVFGIGPVGLMAVAGARLRGAGRIIAVGSRPNRVELAK 208 (351)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEeCCHHHHHHHH
Confidence 44678898888774 555555554 377 4889987 44444444
No 437
>PRK08217 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=76.93 E-value=16 Score=28.93 Aligned_cols=77 Identities=17% Similarity=0.176 Sum_probs=43.2
Q ss_pred CCCCeEEEeCCCccHHHHH----HHHhCCEEEEecc-hhhHHHHHHHHHHhhccccccCCCCCCCCCceEEEEeecCCCc
Q 027530 63 LKGKRVIELGAGCGVAGFG----MALLGCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSGNLLGSIQAVELDWGNED 137 (222)
Q Consensus 63 ~~~~~vLelGcG~G~~~i~----la~~g~~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~v~~~~~d~~~~~ 137 (222)
++++++|=.|++.|+ |.. +++.|++|+.+|. .+.++.+.+.+...+ .++.+...|..+..
T Consensus 3 ~~~~~~lItG~~g~i-G~~~a~~l~~~G~~vi~~~r~~~~~~~~~~~~~~~~--------------~~~~~~~~D~~~~~ 67 (253)
T PRK08217 3 LKDKVIVITGGAQGL-GRAMAEYLAQKGAKLALIDLNQEKLEEAVAECGALG--------------TEVRGYAANVTDEE 67 (253)
T ss_pred CCCCEEEEECCCchH-HHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcC--------------CceEEEEcCCCCHH
Confidence 467899999975544 333 3445889999987 333443333333221 24566666655432
Q ss_pred ccc-------ccCCCccEEEEecc
Q 027530 138 HIK-------AVAPPFDYIIGTDV 154 (222)
Q Consensus 138 ~~~-------~~~~~fD~Ii~~d~ 154 (222)
... ...+++|.||.+.-
T Consensus 68 ~~~~~~~~~~~~~~~id~vi~~ag 91 (253)
T PRK08217 68 DVEATFAQIAEDFGQLNGLINNAG 91 (253)
T ss_pred HHHHHHHHHHHHcCCCCEEEECCC
Confidence 211 11146899887643
No 438
>PRK05476 S-adenosyl-L-homocysteine hydrolase; Provisional
Probab=76.73 E-value=19 Score=31.96 Aligned_cols=90 Identities=14% Similarity=0.078 Sum_probs=51.1
Q ss_pred CCCCCeEEEeCCCc-cHHHH-HHHHhCCEEEEecch-hhHHHHHHHHHHhhccccccCCCCCCCCCceEEEEeecCCCcc
Q 027530 62 KLKGKRVIELGAGC-GVAGF-GMALLGCNVITTDQI-EVLPLLKRNVEWNTSRISQMNPGSGNLLGSIQAVELDWGNEDH 138 (222)
Q Consensus 62 ~~~~~~vLelGcG~-G~~~i-~la~~g~~v~~~D~~-~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~ 138 (222)
.+.|++|+=+|+|. |.... .+...|++|+.+|.+ .... +... .+. .+.. . .+
T Consensus 209 ~l~Gk~VlViG~G~IG~~vA~~lr~~Ga~ViV~d~dp~ra~---~A~~-~G~----------------~v~~--l---~e 263 (425)
T PRK05476 209 LIAGKVVVVAGYGDVGKGCAQRLRGLGARVIVTEVDPICAL---QAAM-DGF----------------RVMT--M---EE 263 (425)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHhCCCEEEEEcCCchhhH---HHHh-cCC----------------EecC--H---HH
Confidence 45789999999985 54333 333458899999973 3211 1111 121 1111 1 11
Q ss_pred ccccCCCccEEEEeccccCccCHHHHHH-HHHHhcCCCeEEEEEEEEc
Q 027530 139 IKAVAPPFDYIIGTDVVYAEHLLEPLLQ-TIFALSGPKTTILLGYEIR 185 (222)
Q Consensus 139 ~~~~~~~fD~Ii~~d~~y~~~~~~~ll~-~~~~~l~~~g~~~l~~~~r 185 (222)
.-..+|+||.+. .. ..++. .....+++|++++.+....
T Consensus 264 ---al~~aDVVI~aT-----G~-~~vI~~~~~~~mK~GailiNvG~~d 302 (425)
T PRK05476 264 ---AAELGDIFVTAT-----GN-KDVITAEHMEAMKDGAILANIGHFD 302 (425)
T ss_pred ---HHhCCCEEEECC-----CC-HHHHHHHHHhcCCCCCEEEEcCCCC
Confidence 123689988652 22 33444 5677789999877765543
No 439
>PRK01438 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=76.72 E-value=17 Score=32.41 Aligned_cols=49 Identities=29% Similarity=0.295 Sum_probs=30.9
Q ss_pred CCCCCCeEEEeCCCc-cHHH-HHHHHhCCEEEEecc-hh-hHHHHHHHHHHhh
Q 027530 61 SKLKGKRVIELGAGC-GVAG-FGMALLGCNVITTDQ-IE-VLPLLKRNVEWNT 109 (222)
Q Consensus 61 ~~~~~~~vLelGcG~-G~~~-i~la~~g~~v~~~D~-~~-~l~~~~~n~~~n~ 109 (222)
..+++++|+=+|+|. |+-. ..++++|.+|+++|. +. ......+.++..+
T Consensus 12 ~~~~~~~v~viG~G~~G~~~A~~L~~~G~~V~~~d~~~~~~~~~~~~~l~~~g 64 (480)
T PRK01438 12 SDWQGLRVVVAGLGVSGFAAADALLELGARVTVVDDGDDERHRALAAILEALG 64 (480)
T ss_pred cCcCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCchhhhHHHHHHHHHcC
Confidence 345778999999984 6532 344466899999996 33 3333334454443
No 440
>PRK06114 short chain dehydrogenase; Provisional
Probab=76.60 E-value=17 Score=29.12 Aligned_cols=79 Identities=19% Similarity=0.265 Sum_probs=47.0
Q ss_pred CCCCCeEEEeCCCccHHHHH----HHHhCCEEEEecc-hh-hHHHHHHHHHHhhccccccCCCCCCCCCceEEEEeecCC
Q 027530 62 KLKGKRVIELGAGCGVAGFG----MALLGCNVITTDQ-IE-VLPLLKRNVEWNTSRISQMNPGSGNLLGSIQAVELDWGN 135 (222)
Q Consensus 62 ~~~~~~vLelGcG~G~~~i~----la~~g~~v~~~D~-~~-~l~~~~~n~~~n~~~~~~~~~~~~~~~~~v~~~~~d~~~ 135 (222)
.++++++|=.|++.|+ |.. +++.|++|+.+|. ++ .++.+.+.+...+ .++.+...|..+
T Consensus 5 ~~~~k~~lVtG~s~gI-G~~ia~~l~~~G~~v~~~~r~~~~~~~~~~~~l~~~~--------------~~~~~~~~D~~~ 69 (254)
T PRK06114 5 DLDGQVAFVTGAGSGI-GQRIAIGLAQAGADVALFDLRTDDGLAETAEHIEAAG--------------RRAIQIAADVTS 69 (254)
T ss_pred CCCCCEEEEECCCchH-HHHHHHHHHHCCCEEEEEeCCcchHHHHHHHHHHhcC--------------CceEEEEcCCCC
Confidence 4578899999977664 433 3445889999986 33 3444444443211 345666777766
Q ss_pred Ccccc-------ccCCCccEEEEeccc
Q 027530 136 EDHIK-------AVAPPFDYIIGTDVV 155 (222)
Q Consensus 136 ~~~~~-------~~~~~fD~Ii~~d~~ 155 (222)
..... ..-++.|++|.+.-+
T Consensus 70 ~~~i~~~~~~~~~~~g~id~li~~ag~ 96 (254)
T PRK06114 70 KADLRAAVARTEAELGALTLAVNAAGI 96 (254)
T ss_pred HHHHHHHHHHHHHHcCCCCEEEECCCC
Confidence 54321 112568999877654
No 441
>cd08295 double_bond_reductase_like Arabidopsis alkenal double bond reductase and leukotriene B4 12-hydroxydehydrogenase. This group includes proteins identified as the Arabidopsis alkenal double bond reductase and leukotriene B4 12-hydroxydehydrogenase. The Arabidopsis enzyme, a member of the medium chain dehydrogenase/reductase family, catalyzes the reduction of 7-8-double bond of phenylpropanal substrates as a plant defense mechanism. Prostaglandins and related eicosanoids (lipid mediators involved in host defense and inflamation) are metabolized by the oxidation of the 15(S)-hydroxyl group of the NAD+-dependent (type I 15-PGDH) 15-prostaglandin dehydrogenase (15-PGDH) followed by reduction by NADPH/NADH-dependent (type II 15-PGDH) delta-13 15-prostaglandin reductase (13-PGR) to 15-keto-13,14,-dihydroprostaglandins. 13-PGR is a bifunctional enzyme, since it also has leukotriene B(4) 12-hydroxydehydrogenase activity. Leukotriene B4 (LTB4) can be metabolized by LTB4 20-hydroxylase in
Probab=76.56 E-value=18 Score=30.44 Aligned_cols=42 Identities=33% Similarity=0.370 Sum_probs=27.2
Q ss_pred CCCCCeEEEeCC-C-ccHHHHHHHH-hCCEEEEecc-hhhHHHHHH
Q 027530 62 KLKGKRVIELGA-G-CGVAGFGMAL-LGCNVITTDQ-IEVLPLLKR 103 (222)
Q Consensus 62 ~~~~~~vLelGc-G-~G~~~i~la~-~g~~v~~~D~-~~~l~~~~~ 103 (222)
..+|.+||=.|+ | .|...+.+|+ +|++|++++. ++-.+.+++
T Consensus 149 ~~~g~~VlI~Ga~G~vG~~aiqlAk~~G~~Vi~~~~~~~~~~~~~~ 194 (338)
T cd08295 149 PKKGETVFVSAASGAVGQLVGQLAKLKGCYVVGSAGSDEKVDLLKN 194 (338)
T ss_pred CCCCCEEEEecCccHHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHH
Confidence 456889998887 3 3655555554 5889888775 444444443
No 442
>PRK08643 acetoin reductase; Validated
Probab=76.51 E-value=16 Score=29.23 Aligned_cols=76 Identities=18% Similarity=0.186 Sum_probs=44.4
Q ss_pred CCeEEEeCCCccHHH---HHHHHhCCEEEEecc-hhhHHHHHHHHHHhhccccccCCCCCCCCCceEEEEeecCCCcccc
Q 027530 65 GKRVIELGAGCGVAG---FGMALLGCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSGNLLGSIQAVELDWGNEDHIK 140 (222)
Q Consensus 65 ~~~vLelGcG~G~~~---i~la~~g~~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~ 140 (222)
++++|=.|+..|+-. ..+++.|++|+++|. ++.++.+...+...+ .++.+...|..+.+...
T Consensus 2 ~k~~lItGas~giG~~la~~l~~~G~~v~~~~r~~~~~~~~~~~~~~~~--------------~~~~~~~~Dl~~~~~~~ 67 (256)
T PRK08643 2 SKVALVTGAGQGIGFAIAKRLVEDGFKVAIVDYNEETAQAAADKLSKDG--------------GKAIAVKADVSDRDQVF 67 (256)
T ss_pred CCEEEEECCCChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcC--------------CeEEEEECCCCCHHHHH
Confidence 467888887765422 234456889999997 444444444443221 24566777777654321
Q ss_pred -------ccCCCccEEEEecc
Q 027530 141 -------AVAPPFDYIIGTDV 154 (222)
Q Consensus 141 -------~~~~~fD~Ii~~d~ 154 (222)
...++.|++|.+--
T Consensus 68 ~~~~~~~~~~~~id~vi~~ag 88 (256)
T PRK08643 68 AAVRQVVDTFGDLNVVVNNAG 88 (256)
T ss_pred HHHHHHHHHcCCCCEEEECCC
Confidence 11246898887643
No 443
>PRK08306 dipicolinate synthase subunit A; Reviewed
Probab=76.27 E-value=33 Score=28.72 Aligned_cols=35 Identities=29% Similarity=0.417 Sum_probs=24.9
Q ss_pred CCCCCCeEEEeCCCc-cHHHHH-HHHhCCEEEEecch
Q 027530 61 SKLKGKRVIELGAGC-GVAGFG-MALLGCNVITTDQI 95 (222)
Q Consensus 61 ~~~~~~~vLelGcG~-G~~~i~-la~~g~~v~~~D~~ 95 (222)
....+++|+=||+|. |...+. +..+|++|+.+|..
T Consensus 148 ~~l~g~kvlViG~G~iG~~~a~~L~~~Ga~V~v~~r~ 184 (296)
T PRK08306 148 ITIHGSNVLVLGFGRTGMTLARTLKALGANVTVGARK 184 (296)
T ss_pred CCCCCCEEEEECCcHHHHHHHHHHHHCCCEEEEEECC
Confidence 345789999999985 544333 33468899999973
No 444
>PRK08340 glucose-1-dehydrogenase; Provisional
Probab=76.21 E-value=9.6 Score=30.68 Aligned_cols=72 Identities=18% Similarity=0.267 Sum_probs=41.9
Q ss_pred eEEEeCCCccH---HHHHHHHhCCEEEEecc-hhhHHHHHHHHHHhhccccccCCCCCCCCCceEEEEeecCCCcccc--
Q 027530 67 RVIELGAGCGV---AGFGMALLGCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSGNLLGSIQAVELDWGNEDHIK-- 140 (222)
Q Consensus 67 ~vLelGcG~G~---~~i~la~~g~~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~-- 140 (222)
++|=.|++.|+ ++..+++.|++|++++. ++.++.+.+.+... ..+.+...|..+.+...
T Consensus 2 ~vlItGas~gIG~aia~~l~~~G~~V~~~~r~~~~~~~~~~~l~~~---------------~~~~~~~~Dv~d~~~~~~~ 66 (259)
T PRK08340 2 NVLVTASSRGIGFNVARELLKKGARVVISSRNEENLEKALKELKEY---------------GEVYAVKADLSDKDDLKNL 66 (259)
T ss_pred eEEEEcCCcHHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHhc---------------CCceEEEcCCCCHHHHHHH
Confidence 57778877664 23344556899999987 44444444433321 24566777776543221
Q ss_pred -----ccCCCccEEEEec
Q 027530 141 -----AVAPPFDYIIGTD 153 (222)
Q Consensus 141 -----~~~~~fD~Ii~~d 153 (222)
..-++.|++|.+-
T Consensus 67 ~~~~~~~~g~id~li~na 84 (259)
T PRK08340 67 VKEAWELLGGIDALVWNA 84 (259)
T ss_pred HHHHHHhcCCCCEEEECC
Confidence 1125689988653
No 445
>cd01492 Aos1_SUMO Ubiquitin activating enzyme (E1) subunit Aos1. Aos1 is part of the heterodimeric activating enzyme (E1), specific for the SUMO family of ubiquitin-like proteins (Ubls). E1 enzymes are part of a conjugation cascade to attach Ub or Ubls, covalently to substrate proteins consisting of activating (E1), conjugating (E2), and/or ligating (E3) enzymes. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and Ubls C-terminus. The E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Post-translational modification by SUMO family of ubiquitin-like proteins (Ublps) is involved in cell division, nuclear transport, the stress response and signal transduction. Aos1 contains part of the adenylation domain.
Probab=76.18 E-value=14 Score=28.97 Aligned_cols=33 Identities=21% Similarity=0.373 Sum_probs=22.3
Q ss_pred CCCCeEEEeCCCc-cH-HHHHHHHhCC-EEEEecch
Q 027530 63 LKGKRVIELGAGC-GV-AGFGMALLGC-NVITTDQI 95 (222)
Q Consensus 63 ~~~~~vLelGcG~-G~-~~i~la~~g~-~v~~~D~~ 95 (222)
.++++||=+|||. |. +...|+..|. +++.+|.+
T Consensus 19 L~~s~VlIiG~gglG~evak~La~~GVg~i~lvD~d 54 (197)
T cd01492 19 LRSARILLIGLKGLGAEIAKNLVLSGIGSLTILDDR 54 (197)
T ss_pred HHhCcEEEEcCCHHHHHHHHHHHHcCCCEEEEEECC
Confidence 3567999999985 32 3344555676 58888853
No 446
>PLN02514 cinnamyl-alcohol dehydrogenase
Probab=76.17 E-value=22 Score=30.35 Aligned_cols=32 Identities=31% Similarity=0.332 Sum_probs=22.1
Q ss_pred CCCCeEEEeCCCc-cHHHHHHHHh-CCEEEEecc
Q 027530 63 LKGKRVIELGAGC-GVAGFGMALL-GCNVITTDQ 94 (222)
Q Consensus 63 ~~~~~vLelGcG~-G~~~i~la~~-g~~v~~~D~ 94 (222)
.+|.+||=.|+|. |...+.+|+. |++|++++.
T Consensus 179 ~~g~~vlV~G~G~vG~~av~~Ak~~G~~vi~~~~ 212 (357)
T PLN02514 179 QSGLRGGILGLGGVGHMGVKIAKAMGHHVTVISS 212 (357)
T ss_pred CCCCeEEEEcccHHHHHHHHHHHHCCCeEEEEeC
Confidence 4678888888765 6666655554 778777765
No 447
>PRK06196 oxidoreductase; Provisional
Probab=75.97 E-value=12 Score=31.33 Aligned_cols=76 Identities=24% Similarity=0.385 Sum_probs=43.9
Q ss_pred CCCCCCeEEEeCCCccHHHHH----HHHhCCEEEEecc-hhhHHHHHHHHHHhhccccccCCCCCCCCCceEEEEeecCC
Q 027530 61 SKLKGKRVIELGAGCGVAGFG----MALLGCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSGNLLGSIQAVELDWGN 135 (222)
Q Consensus 61 ~~~~~~~vLelGcG~G~~~i~----la~~g~~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~v~~~~~d~~~ 135 (222)
....+++||=.|++.|+ |.. +++.|++|++++. ++..+.+...+. .+.+...|..+
T Consensus 22 ~~l~~k~vlITGasggI-G~~~a~~L~~~G~~Vv~~~R~~~~~~~~~~~l~------------------~v~~~~~Dl~d 82 (315)
T PRK06196 22 HDLSGKTAIVTGGYSGL-GLETTRALAQAGAHVIVPARRPDVAREALAGID------------------GVEVVMLDLAD 82 (315)
T ss_pred CCCCCCEEEEeCCCchH-HHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHhh------------------hCeEEEccCCC
Confidence 34578899999976554 444 3445889999886 333332222221 24566667665
Q ss_pred Ccccc-------ccCCCccEEEEeccc
Q 027530 136 EDHIK-------AVAPPFDYIIGTDVV 155 (222)
Q Consensus 136 ~~~~~-------~~~~~fD~Ii~~d~~ 155 (222)
..... ....+.|++|.+--+
T Consensus 83 ~~~v~~~~~~~~~~~~~iD~li~nAg~ 109 (315)
T PRK06196 83 LESVRAFAERFLDSGRRIDILINNAGV 109 (315)
T ss_pred HHHHHHHHHHHHhcCCCCCEEEECCCC
Confidence 54321 112568998876543
No 448
>cd05285 sorbitol_DH Sorbitol dehydrogenase. Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose. Sorbitol dehydrogenase is tetrameric and has a single catalytic zinc per subunit. Aldose reductase catalyzes the NADP(H)-dependent conversion of glucose to sorbital, and SDH uses NAD(H) in the conversion of sorbitol to fructose. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit.
Probab=75.96 E-value=22 Score=29.89 Aligned_cols=41 Identities=29% Similarity=0.400 Sum_probs=25.7
Q ss_pred CCCCCCeEEEeCCCc-cHHHHHHHH-hCCE-EEEecc-hhhHHHH
Q 027530 61 SKLKGKRVIELGAGC-GVAGFGMAL-LGCN-VITTDQ-IEVLPLL 101 (222)
Q Consensus 61 ~~~~~~~vLelGcG~-G~~~i~la~-~g~~-v~~~D~-~~~l~~~ 101 (222)
...+|.+||=.|+|. |...+.+|+ .|++ |++++. ++..+.+
T Consensus 159 ~~~~g~~vlI~g~g~vG~~a~~lak~~G~~~v~~~~~~~~~~~~~ 203 (343)
T cd05285 159 GVRPGDTVLVFGAGPIGLLTAAVAKAFGATKVVVTDIDPSRLEFA 203 (343)
T ss_pred CCCCCCEEEEECCCHHHHHHHHHHHHcCCcEEEEECCCHHHHHHH
Confidence 345678888888764 555555554 3777 888875 4444444
No 449
>PRK08226 short chain dehydrogenase; Provisional
Probab=75.93 E-value=17 Score=29.22 Aligned_cols=78 Identities=23% Similarity=0.180 Sum_probs=44.3
Q ss_pred CCCCeEEEeCCCccHHH---HHHHHhCCEEEEecchh-hHHHHHHHHHHhhccccccCCCCCCCCCceEEEEeecCCCcc
Q 027530 63 LKGKRVIELGAGCGVAG---FGMALLGCNVITTDQIE-VLPLLKRNVEWNTSRISQMNPGSGNLLGSIQAVELDWGNEDH 138 (222)
Q Consensus 63 ~~~~~vLelGcG~G~~~---i~la~~g~~v~~~D~~~-~l~~~~~n~~~n~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~ 138 (222)
++++++|=.|+..|+-. ..+++.|++|++++.++ ..+.++ .+... ..++.+...|..+...
T Consensus 4 ~~~~~~lItG~s~giG~~la~~l~~~G~~Vv~~~r~~~~~~~~~-~~~~~--------------~~~~~~~~~Dl~~~~~ 68 (263)
T PRK08226 4 LTGKTALITGALQGIGEGIARVFARHGANLILLDISPEIEKLAD-ELCGR--------------GHRCTAVVADVRDPAS 68 (263)
T ss_pred CCCCEEEEeCCCChHHHHHHHHHHHCCCEEEEecCCHHHHHHHH-HHHHh--------------CCceEEEECCCCCHHH
Confidence 46789999998765422 23344588999999743 222222 22211 1245667777766543
Q ss_pred ccc-------cCCCccEEEEeccc
Q 027530 139 IKA-------VAPPFDYIIGTDVV 155 (222)
Q Consensus 139 ~~~-------~~~~fD~Ii~~d~~ 155 (222)
... ..++.|++|.+-.+
T Consensus 69 v~~~~~~~~~~~~~id~vi~~ag~ 92 (263)
T PRK08226 69 VAAAIKRAKEKEGRIDILVNNAGV 92 (263)
T ss_pred HHHHHHHHHHHcCCCCEEEECCCc
Confidence 211 12468988876543
No 450
>PRK08993 2-deoxy-D-gluconate 3-dehydrogenase; Validated
Probab=75.90 E-value=14 Score=29.67 Aligned_cols=78 Identities=21% Similarity=0.299 Sum_probs=44.3
Q ss_pred CCCCCeEEEeCCCccH---HHHHHHHhCCEEEEecchhhHHHHHHHHHHhhccccccCCCCCCCCCceEEEEeecCCCcc
Q 027530 62 KLKGKRVIELGAGCGV---AGFGMALLGCNVITTDQIEVLPLLKRNVEWNTSRISQMNPGSGNLLGSIQAVELDWGNEDH 138 (222)
Q Consensus 62 ~~~~~~vLelGcG~G~---~~i~la~~g~~v~~~D~~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~ 138 (222)
.++|+++|=.|+..|+ ++..+++.|++|+++|.... +...+.+...+ ..+.....|..+.+.
T Consensus 7 ~l~~k~~lItG~~~gIG~a~a~~l~~~G~~vv~~~~~~~-~~~~~~~~~~~--------------~~~~~~~~Dl~~~~~ 71 (253)
T PRK08993 7 SLEGKVAVVTGCDTGLGQGMALGLAEAGCDIVGINIVEP-TETIEQVTALG--------------RRFLSLTADLRKIDG 71 (253)
T ss_pred CCCCCEEEEECCCchHHHHHHHHHHHCCCEEEEecCcch-HHHHHHHHhcC--------------CeEEEEECCCCCHHH
Confidence 4678899999987654 22334456899999886332 11222222111 245666767665432
Q ss_pred cc-------ccCCCccEEEEecc
Q 027530 139 IK-------AVAPPFDYIIGTDV 154 (222)
Q Consensus 139 ~~-------~~~~~fD~Ii~~d~ 154 (222)
.. ...++.|++|.+.-
T Consensus 72 ~~~~~~~~~~~~~~~D~li~~Ag 94 (253)
T PRK08993 72 IPALLERAVAEFGHIDILVNNAG 94 (253)
T ss_pred HHHHHHHHHHHhCCCCEEEECCC
Confidence 21 11247899886643
No 451
>PRK06197 short chain dehydrogenase; Provisional
Probab=75.90 E-value=13 Score=30.95 Aligned_cols=81 Identities=20% Similarity=0.299 Sum_probs=46.5
Q ss_pred CCCCCCeEEEeCCCccHHHHH----HHHhCCEEEEecc-hhhHHHHHHHHHHhhccccccCCCCCCCCCceEEEEeecCC
Q 027530 61 SKLKGKRVIELGAGCGVAGFG----MALLGCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSGNLLGSIQAVELDWGN 135 (222)
Q Consensus 61 ~~~~~~~vLelGcG~G~~~i~----la~~g~~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~v~~~~~d~~~ 135 (222)
.++++++||=.|+..|+ |.. +++.|++|++++. .+..+.+.+.+.... ...++.+...|..+
T Consensus 12 ~~~~~k~vlItGas~gI-G~~~a~~l~~~G~~vi~~~r~~~~~~~~~~~l~~~~------------~~~~~~~~~~Dl~d 78 (306)
T PRK06197 12 PDQSGRVAVVTGANTGL-GYETAAALAAKGAHVVLAVRNLDKGKAAAARITAAT------------PGADVTLQELDLTS 78 (306)
T ss_pred ccCCCCEEEEcCCCCcH-HHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHHhC------------CCCceEEEECCCCC
Confidence 35678899988876554 333 4456889888876 443333333333211 01356777777776
Q ss_pred Ccccc-------ccCCCccEEEEecc
Q 027530 136 EDHIK-------AVAPPFDYIIGTDV 154 (222)
Q Consensus 136 ~~~~~-------~~~~~fD~Ii~~d~ 154 (222)
..... ...++.|++|.+--
T Consensus 79 ~~~v~~~~~~~~~~~~~iD~li~nAg 104 (306)
T PRK06197 79 LASVRAAADALRAAYPRIDLLINNAG 104 (306)
T ss_pred HHHHHHHHHHHHhhCCCCCEEEECCc
Confidence 54321 11246899887643
No 452
>PRK05650 short chain dehydrogenase; Provisional
Probab=75.88 E-value=9.6 Score=30.89 Aligned_cols=75 Identities=19% Similarity=0.083 Sum_probs=42.4
Q ss_pred eEEEeCCCccH---HHHHHHHhCCEEEEecc-hhhHHHHHHHHHHhhccccccCCCCCCCCCceEEEEeecCCCcccc--
Q 027530 67 RVIELGAGCGV---AGFGMALLGCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSGNLLGSIQAVELDWGNEDHIK-- 140 (222)
Q Consensus 67 ~vLelGcG~G~---~~i~la~~g~~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~-- 140 (222)
+||=.|+..|+ ++..+++.|++|++++. .+-++.+...+...+ .++.+...|+.+.....
T Consensus 2 ~vlVtGasggIG~~la~~l~~~g~~V~~~~r~~~~~~~~~~~l~~~~--------------~~~~~~~~D~~~~~~~~~~ 67 (270)
T PRK05650 2 RVMITGAASGLGRAIALRWAREGWRLALADVNEEGGEETLKLLREAG--------------GDGFYQRCDVRDYSQLTAL 67 (270)
T ss_pred EEEEecCCChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcC--------------CceEEEEccCCCHHHHHHH
Confidence 57777875554 22334456889999987 333443333333222 35667777776654321
Q ss_pred -----ccCCCccEEEEeccc
Q 027530 141 -----AVAPPFDYIIGTDVV 155 (222)
Q Consensus 141 -----~~~~~fD~Ii~~d~~ 155 (222)
...+++|++|.+--.
T Consensus 68 ~~~i~~~~~~id~lI~~ag~ 87 (270)
T PRK05650 68 AQACEEKWGGIDVIVNNAGV 87 (270)
T ss_pred HHHHHHHcCCCCEEEECCCC
Confidence 112468998876443
No 453
>PRK12921 2-dehydropantoate 2-reductase; Provisional
Probab=75.70 E-value=20 Score=29.76 Aligned_cols=99 Identities=20% Similarity=0.155 Sum_probs=51.7
Q ss_pred eEEEeCCCc-c-HHHHHHHHhCCEEEEecchhhHHHHHHHHHHhhccccccCCCCCCCCCceEEEEeecCCCccccccCC
Q 027530 67 RVIELGAGC-G-VAGFGMALLGCNVITTDQIEVLPLLKRNVEWNTSRISQMNPGSGNLLGSIQAVELDWGNEDHIKAVAP 144 (222)
Q Consensus 67 ~vLelGcG~-G-~~~i~la~~g~~v~~~D~~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~ 144 (222)
+|+=+|+|. | .++..+++.|.+|++++.++.++.++ .+++..... .....+. .....+......
T Consensus 2 kI~IiG~G~iG~~~a~~L~~~g~~V~~~~r~~~~~~~~----~~g~~~~~~-------~~~~~~~---~~~~~~~~~~~~ 67 (305)
T PRK12921 2 RIAVVGAGAVGGTFGGRLLEAGRDVTFLVRPKRAKALR----ERGLVIRSD-------HGDAVVP---GPVITDPEELTG 67 (305)
T ss_pred eEEEECCCHHHHHHHHHHHHCCCceEEEecHHHHHHHH----hCCeEEEeC-------CCeEEec---ceeecCHHHccC
Confidence 467788886 3 36666777788899998733333322 233221100 0011100 000011111236
Q ss_pred CccEEEEeccccCccCHHHHHHHHHHhcCCCeEEEEEE
Q 027530 145 PFDYIIGTDVVYAEHLLEPLLQTIFALSGPKTTILLGY 182 (222)
Q Consensus 145 ~fD~Ii~~d~~y~~~~~~~ll~~~~~~l~~~g~~~l~~ 182 (222)
.+|+|+.+-.- ...+.+++.+...++++..++...
T Consensus 68 ~~d~vilavk~---~~~~~~~~~l~~~~~~~~~ii~~~ 102 (305)
T PRK12921 68 PFDLVILAVKA---YQLDAAIPDLKPLVGEDTVIIPLQ 102 (305)
T ss_pred CCCEEEEEecc---cCHHHHHHHHHhhcCCCCEEEEee
Confidence 79988765332 246778888888888776655443
No 454
>PRK09489 rsmC 16S ribosomal RNA m2G1207 methyltransferase; Provisional
Probab=75.61 E-value=50 Score=28.33 Aligned_cols=41 Identities=24% Similarity=0.143 Sum_probs=31.1
Q ss_pred CCCccEEEEeccccCccC---HHHHHHHHHHhcCCCeEEEEEEEEcCh
Q 027530 143 APPFDYIIGTDVVYAEHL---LEPLLQTIFALSGPKTTILLGYEIRST 187 (222)
Q Consensus 143 ~~~fD~Ii~~d~~y~~~~---~~~ll~~~~~~l~~~g~~~l~~~~r~~ 187 (222)
...||.|+. |.+.. ..-++..+...|+|||.++++..++..
T Consensus 74 ~~~~d~~~~----~~pk~k~~~~~~l~~~~~~l~~g~~i~~~G~~~~g 117 (342)
T PRK09489 74 VADCDTLIY----YWPKNKQEAQFQLMNLLSLLPVGTDIFVVGENRSG 117 (342)
T ss_pred CCCCCEEEE----ECCCCHHHHHHHHHHHHHhCCCCCEEEEEEecccc
Confidence 357999884 44333 445777788889999999999988876
No 455
>COG4301 Uncharacterized conserved protein [Function unknown]
Probab=75.42 E-value=45 Score=27.54 Aligned_cols=112 Identities=13% Similarity=0.070 Sum_probs=62.9
Q ss_pred CCCCeEEEeCCCccHHHHHHH----HhCC--EEEEecchh-hHHHHHHHHHHhhccccccCCCCCCCCCceEEEEeecCC
Q 027530 63 LKGKRVIELGAGCGVAGFGMA----LLGC--NVITTDQIE-VLPLLKRNVEWNTSRISQMNPGSGNLLGSIQAVELDWGN 135 (222)
Q Consensus 63 ~~~~~vLelGcG~G~~~i~la----~~g~--~v~~~D~~~-~l~~~~~n~~~n~~~~~~~~~~~~~~~~~v~~~~~d~~~ 135 (222)
..+.+.+|||+|+-.=+-.+. ..|. +++.+|++. .++...+.+...-. +-.+.....|+..
T Consensus 77 ~g~~~lveLGsGns~Ktr~Llda~~~~~~~~ryvpiDv~a~iL~~ta~ai~~~y~------------~l~v~~l~~~~~~ 144 (321)
T COG4301 77 TGACTLVELGSGNSTKTRILLDALAHRGSLLRYVPIDVSASILRATATAILREYP------------GLEVNALCGDYEL 144 (321)
T ss_pred hCcceEEEecCCccHHHHHHHHHhhhcCCcceeeeecccHHHHHHHHHHHHHhCC------------CCeEeehhhhHHH
Confidence 346789999999876444333 3443 699999955 55544444443321 1233444444332
Q ss_pred CccccccCCCccEE-EEeccc--cCccCHHHHHHHHHHhcCCCeEEEEEEEEcCh
Q 027530 136 EDHIKAVAPPFDYI-IGTDVV--YAEHLLEPLLQTIFALSGPKTTILLGYEIRST 187 (222)
Q Consensus 136 ~~~~~~~~~~fD~I-i~~d~~--y~~~~~~~ll~~~~~~l~~~g~~~l~~~~r~~ 187 (222)
...... ...=-++ +....+ +.+.....++..+...++||-.+++....+.+
T Consensus 145 ~La~~~-~~~~Rl~~flGStlGN~tp~e~~~Fl~~l~~a~~pGd~~LlGvDl~k~ 198 (321)
T COG4301 145 ALAELP-RGGRRLFVFLGSTLGNLTPGECAVFLTQLRGALRPGDYFLLGVDLRKP 198 (321)
T ss_pred HHhccc-CCCeEEEEEecccccCCChHHHHHHHHHHHhcCCCcceEEEeccccCH
Confidence 211111 1111121 111222 22455677999999999999999998765554
No 456
>PRK06500 short chain dehydrogenase; Provisional
Probab=75.36 E-value=38 Score=26.73 Aligned_cols=33 Identities=24% Similarity=0.282 Sum_probs=22.8
Q ss_pred CCCCeEEEeCCCccHHH---HHHHHhCCEEEEecch
Q 027530 63 LKGKRVIELGAGCGVAG---FGMALLGCNVITTDQI 95 (222)
Q Consensus 63 ~~~~~vLelGcG~G~~~---i~la~~g~~v~~~D~~ 95 (222)
++++++|=.|++.|+-. ..+++.|++|++++.+
T Consensus 4 ~~~k~vlItGasg~iG~~la~~l~~~g~~v~~~~r~ 39 (249)
T PRK06500 4 LQGKTALITGGTSGIGLETARQFLAEGARVAITGRD 39 (249)
T ss_pred CCCCEEEEeCCCchHHHHHHHHHHHCCCEEEEecCC
Confidence 45788999998765432 2344568899999873
No 457
>cd08293 PTGR2 Prostaglandin reductase. Prostaglandins and related eicosanoids are metabolized by the oxidation of the 15(S)-hydroxyl group of the NAD+-dependent (type I 15-PGDH) 15-prostaglandin dehydrogenase (15-PGDH) followed by reduction by NADPH/NADH-dependent (type II 15-PGDH) delta-13 15-prostaglandin reductase (13-PGR) to 15-keto-13,14,-dihydroprostaglandins. 13-PGR is a bifunctional enzyme, since it also has leukotriene B(4) 12-hydroxydehydrogenase activity. These 15-PGDH and related enzymes are members of the medium chain dehydrogenase/reductase family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acid
Probab=75.35 E-value=7.3 Score=32.77 Aligned_cols=38 Identities=34% Similarity=0.518 Sum_probs=25.1
Q ss_pred CeEEEeCC-C-ccHHHHHHHH-hCC-EEEEecc-hhhHHHHHH
Q 027530 66 KRVIELGA-G-CGVAGFGMAL-LGC-NVITTDQ-IEVLPLLKR 103 (222)
Q Consensus 66 ~~vLelGc-G-~G~~~i~la~-~g~-~v~~~D~-~~~l~~~~~ 103 (222)
.+||=.|+ | .|...+.+|+ +|+ +|++++. ++-.+.+++
T Consensus 156 ~~VlI~ga~g~vG~~aiqlAk~~G~~~Vi~~~~s~~~~~~~~~ 198 (345)
T cd08293 156 QTMVVSGAAGACGSLAGQIGRLLGCSRVVGICGSDEKCQLLKS 198 (345)
T ss_pred CEEEEECCCcHHHHHHHHHHHHcCCCEEEEEcCCHHHHHHHHH
Confidence 78988886 3 4666666665 487 7999886 444444433
No 458
>PRK09072 short chain dehydrogenase; Provisional
Probab=75.20 E-value=15 Score=29.55 Aligned_cols=76 Identities=24% Similarity=0.252 Sum_probs=45.2
Q ss_pred CCCeEEEeCCCccHH---HHHHHHhCCEEEEecc-hhhHHHHHHHHHHhhccccccCCCCCCCCCceEEEEeecCCCccc
Q 027530 64 KGKRVIELGAGCGVA---GFGMALLGCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSGNLLGSIQAVELDWGNEDHI 139 (222)
Q Consensus 64 ~~~~vLelGcG~G~~---~i~la~~g~~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~ 139 (222)
+++++|=.|++.|+- ...+++.|++|++++. ++.++.+...+. . ..++.+...|..+....
T Consensus 4 ~~~~vlItG~s~~iG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~~-~--------------~~~~~~~~~D~~d~~~~ 68 (263)
T PRK09072 4 KDKRVLLTGASGGIGQALAEALAAAGARLLLVGRNAEKLEALAARLP-Y--------------PGRHRWVVADLTSEAGR 68 (263)
T ss_pred CCCEEEEECCCchHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHh-c--------------CCceEEEEccCCCHHHH
Confidence 567899999876652 2334566899999997 444443333221 1 13567777777765432
Q ss_pred cc------cCCCccEEEEecc
Q 027530 140 KA------VAPPFDYIIGTDV 154 (222)
Q Consensus 140 ~~------~~~~fD~Ii~~d~ 154 (222)
.. ..+..|.++.+--
T Consensus 69 ~~~~~~~~~~~~id~lv~~ag 89 (263)
T PRK09072 69 EAVLARAREMGGINVLINNAG 89 (263)
T ss_pred HHHHHHHHhcCCCCEEEECCC
Confidence 11 0246899887643
No 459
>PF03721 UDPG_MGDP_dh_N: UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain; InterPro: IPR001732 The UDP-glucose/GDP-mannose dehydrogenases are a small group of enzymes which possesses the ability to catalyse the NAD-dependent 2-fold oxidation of an alcohol to an acid without the release of an aldehyde intermediate [, ]. The enzymes have a wide range of functions. In plants UDP-glucose dehydrogenase, 1.1.1.22 from EC, is an important enzyme in the synthesis of hemicellulose and pectin [], which are the components of newly formed cell walls; while in zebrafish UDP-glucose dehydrogenase is required for cardiac valve formation []. In Xanthomonas campestris, a plant pathogen, UDP-glucose dehydrogenase is required for virulence []. GDP-mannose dehydrogenase, 1.1.1.132 from EC, catalyses the formation of GDP-mannuronic acid, which is the monomeric unit from which the exopolysaccharide alginate is formed. Alginate is secreted by a number of bacteria, which include Pseudomonas aeruginosa and Azotobacter vinelandii. In P. aeruginosa, alginate is believed to play an important role in the bacteria's resistance to antibiotics and the host immune response [], while in A. vinelandii it is essential for the encystment process []. This entry represents the N-terminal NAD(+)-binding domain. Structural studies indicate that this domain forms an alpha-beta structure containing the six-stranded parallel beta sheet characteristic of the dinucleotide binding Rossman fold [, ].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0055114 oxidation-reduction process; PDB: 3OJO_A 3OJL_A 1MV8_B 1MUU_A 1MFZ_C 3GG2_D 1DLJ_A 1DLI_A 3G79_B 2Y0E_D ....
Probab=75.17 E-value=5.7 Score=30.84 Aligned_cols=104 Identities=20% Similarity=0.264 Sum_probs=47.5
Q ss_pred eEEEeCCCc-cH-HHHHHHHhCCEEEEecc-hhhHHHHHHHHHHhhccccccCCCCC------CCCCceEEEEeecCCCc
Q 027530 67 RVIELGAGC-GV-AGFGMALLGCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSG------NLLGSIQAVELDWGNED 137 (222)
Q Consensus 67 ~vLelGcG~-G~-~~i~la~~g~~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~------~~~~~v~~~~~d~~~~~ 137 (222)
+|-=+|.|- |+ .+..+|..|.+|+++|. ++.++.+.+.. .++. .+.-. ....++.+.. ++.
T Consensus 2 ~I~ViGlGyvGl~~A~~lA~~G~~V~g~D~~~~~v~~l~~g~----~p~~--E~~l~~ll~~~~~~~~l~~t~-~~~--- 71 (185)
T PF03721_consen 2 KIAVIGLGYVGLPLAAALAEKGHQVIGVDIDEEKVEALNNGE----LPIY--EPGLDELLKENVSAGRLRATT-DIE--- 71 (185)
T ss_dssp EEEEE--STTHHHHHHHHHHTTSEEEEE-S-HHHHHHHHTTS----SSS---CTTHHHHHHHHHHTTSEEEES-EHH---
T ss_pred EEEEECCCcchHHHHHHHHhCCCEEEEEeCChHHHHHHhhcc----cccc--ccchhhhhccccccccchhhh-hhh---
Confidence 344466664 54 34566678999999998 45555443210 0000 00000 0012333331 111
Q ss_pred cccccCCCccEEEEe-ccccCc------cCHHHHHHHHHHhcCCCeEEEEEEE
Q 027530 138 HIKAVAPPFDYIIGT-DVVYAE------HLLEPLLQTIFALSGPKTTILLGYE 183 (222)
Q Consensus 138 ~~~~~~~~fD~Ii~~-d~~y~~------~~~~~ll~~~~~~l~~~g~~~l~~~ 183 (222)
..-...|+++.+ +.-+.. ..+...++.+...++++..+++-..
T Consensus 72 ---~ai~~adv~~I~VpTP~~~~~~~Dls~v~~a~~~i~~~l~~~~lvV~~ST 121 (185)
T PF03721_consen 72 ---EAIKDADVVFICVPTPSDEDGSPDLSYVESAIESIAPVLRPGDLVVIEST 121 (185)
T ss_dssp ---HHHHH-SEEEE----EBETTTSBETHHHHHHHHHHHHHHCSCEEEEESSS
T ss_pred ---hhhhccceEEEecCCCccccCCccHHHHHHHHHHHHHHHhhcceEEEccE
Confidence 112346766443 333322 2367778888888999777666433
No 460
>PRK12429 3-hydroxybutyrate dehydrogenase; Provisional
Probab=75.15 E-value=13 Score=29.67 Aligned_cols=76 Identities=24% Similarity=0.289 Sum_probs=45.0
Q ss_pred CCCeEEEeCCCccHHHHHHHH----hCCEEEEecc-hhhHHHHHHHHHHhhccccccCCCCCCCCCceEEEEeecCCCcc
Q 027530 64 KGKRVIELGAGCGVAGFGMAL----LGCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSGNLLGSIQAVELDWGNEDH 138 (222)
Q Consensus 64 ~~~~vLelGcG~G~~~i~la~----~g~~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~ 138 (222)
++++||=.|+. |.+|..+++ .|.+|++++. ++..+.....+... ..++.+...|..+...
T Consensus 3 ~~~~vlItG~s-g~iG~~la~~l~~~g~~v~~~~r~~~~~~~~~~~~~~~--------------~~~~~~~~~Dl~~~~~ 67 (258)
T PRK12429 3 KGKVALVTGAA-SGIGLEIALALAKEGAKVVIADLNDEAAAAAAEALQKA--------------GGKAIGVAMDVTDEEA 67 (258)
T ss_pred CCCEEEEECCC-chHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHHHhc--------------CCcEEEEEcCCCCHHH
Confidence 56788877764 445555443 4889999987 44444444333322 2356777777776543
Q ss_pred cc-------ccCCCccEEEEecc
Q 027530 139 IK-------AVAPPFDYIIGTDV 154 (222)
Q Consensus 139 ~~-------~~~~~fD~Ii~~d~ 154 (222)
.. ...+.+|+||.+--
T Consensus 68 ~~~~~~~~~~~~~~~d~vi~~a~ 90 (258)
T PRK12429 68 INAGIDYAVETFGGVDILVNNAG 90 (258)
T ss_pred HHHHHHHHHHHcCCCCEEEECCC
Confidence 21 11246899887543
No 461
>cd01075 NAD_bind_Leu_Phe_Val_DH NAD(P) binding domain of leucine dehydrogenase, phenylalanine dehydrogenase, and valine dehydrogenase. Amino acid dehydrogenase (DH) is a widely distributed family of enzymes that catalyzes the oxidative deamination of an amino acid to its keto acid and ammonia with concomitant reduction of NADP+. For example, leucine DH catalyzes the reversible oxidative deamination of L-leucine and several other straight or branched chain amino acids to the corresponding 2-oxoacid derivative. Amino acid DH -like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann fold superfamily inc
Probab=75.13 E-value=12 Score=29.42 Aligned_cols=43 Identities=26% Similarity=0.281 Sum_probs=29.0
Q ss_pred CCCCCCeEEEeCCCc-cH-HHHHHHHhCCEEEEecc-hhhHHHHHH
Q 027530 61 SKLKGKRVIELGAGC-GV-AGFGMALLGCNVITTDQ-IEVLPLLKR 103 (222)
Q Consensus 61 ~~~~~~~vLelGcG~-G~-~~i~la~~g~~v~~~D~-~~~l~~~~~ 103 (222)
...+|++|+=+|.|. |. .+..+.+.|++|+++|. ++.++.+.+
T Consensus 24 ~~l~gk~v~I~G~G~vG~~~A~~L~~~G~~Vvv~D~~~~~~~~~~~ 69 (200)
T cd01075 24 DSLEGKTVAVQGLGKVGYKLAEHLLEEGAKLIVADINEEAVARAAE 69 (200)
T ss_pred CCCCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEcCCHHHHHHHHH
Confidence 567899999999984 32 22334456899999998 444444433
No 462
>PRK07831 short chain dehydrogenase; Provisional
Probab=75.04 E-value=18 Score=29.12 Aligned_cols=82 Identities=22% Similarity=0.238 Sum_probs=47.8
Q ss_pred CCCCCeEEEeCC-CccH---HHHHHHHhCCEEEEecc-hhhHHHHHHHHHHhhccccccCCCCCCCCCceEEEEeecCCC
Q 027530 62 KLKGKRVIELGA-GCGV---AGFGMALLGCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSGNLLGSIQAVELDWGNE 136 (222)
Q Consensus 62 ~~~~~~vLelGc-G~G~---~~i~la~~g~~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~v~~~~~d~~~~ 136 (222)
..+++++|=.|+ |.|+ +...++..|++|+.+|. .+.++.+.+.++.+. ...++.+...|..+.
T Consensus 14 ~~~~k~vlItG~sg~gIG~~ia~~l~~~G~~V~~~~~~~~~~~~~~~~~~~~~------------~~~~~~~~~~Dl~~~ 81 (262)
T PRK07831 14 LLAGKVVLVTAAAGTGIGSATARRALEEGARVVISDIHERRLGETADELAAEL------------GLGRVEAVVCDVTSE 81 (262)
T ss_pred ccCCCEEEEECCCcccHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHHhc------------CCceEEEEEccCCCH
Confidence 456789999996 4454 23344566889999987 444554444443321 012566677777654
Q ss_pred cccc-------ccCCCccEEEEeccc
Q 027530 137 DHIK-------AVAPPFDYIIGTDVV 155 (222)
Q Consensus 137 ~~~~-------~~~~~fD~Ii~~d~~ 155 (222)
+... ...++.|++|.+--+
T Consensus 82 ~~~~~~~~~~~~~~g~id~li~~ag~ 107 (262)
T PRK07831 82 AQVDALIDAAVERLGRLDVLVNNAGL 107 (262)
T ss_pred HHHHHHHHHHHHHcCCCCEEEECCCC
Confidence 3221 112468998877544
No 463
>PRK11154 fadJ multifunctional fatty acid oxidation complex subunit alpha; Reviewed
Probab=74.95 E-value=22 Score=33.77 Aligned_cols=103 Identities=17% Similarity=0.100 Sum_probs=55.4
Q ss_pred CeEEEeCCCc-cH-HHHHHH-HhCCEEEEecc-hhhHHHHHHHHHHhhccccccCCCC----CCCCCceEEEEeecCCCc
Q 027530 66 KRVIELGAGC-GV-AGFGMA-LLGCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGS----GNLLGSIQAVELDWGNED 137 (222)
Q Consensus 66 ~~vLelGcG~-G~-~~i~la-~~g~~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~----~~~~~~v~~~~~d~~~~~ 137 (222)
++|-=||+|+ |. ++..++ ..|..|+..|. ++.++.++..+.............+ .....++++.. ++
T Consensus 310 ~~v~ViGaG~mG~giA~~~a~~~G~~V~l~d~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~~-~~---- 384 (708)
T PRK11154 310 NKVGVLGGGLMGGGIAYVTATKAGLPVRIKDINPQGINHALKYSWDLLDKKVKRRHLKPSERDKQMALISGTT-DY---- 384 (708)
T ss_pred cEEEEECCchhhHHHHHHHHHHcCCeEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhcEEEeC-Ch----
Confidence 5789999997 43 444455 66999999998 6677777666654321110000000 00112343331 11
Q ss_pred cccccCCCccEEEEeccccCccCHHHHHHHHHHhcCCCeE
Q 027530 138 HIKAVAPPFDYIIGTDVVYAEHLLEPLLQTIFALSGPKTT 177 (222)
Q Consensus 138 ~~~~~~~~fD~Ii~~d~~y~~~~~~~ll~~~~~~l~~~g~ 177 (222)
. .-...|+||=+ +.-..+.-..+++.+.++++|+.+
T Consensus 385 --~-~~~~aDlViEa-v~E~~~~K~~v~~~le~~~~~~~i 420 (708)
T PRK11154 385 --R-GFKHADVVIEA-VFEDLALKQQMVAEVEQNCAPHTI 420 (708)
T ss_pred --H-HhccCCEEeec-ccccHHHHHHHHHHHHhhCCCCcE
Confidence 1 12457777743 223334445577777777777654
No 464
>COG0275 Predicted S-adenosylmethionine-dependent methyltransferase involved in cell envelope biogenesis [Cell envelope biogenesis, outer membrane]
Probab=74.93 E-value=22 Score=30.03 Aligned_cols=48 Identities=13% Similarity=0.027 Sum_probs=37.0
Q ss_pred CCCCCeEEEeCCCccHHHHHHHHhC---CEEEEecc-hhhHHHHHHHHHHhh
Q 027530 62 KLKGKRVIELGAGCGVAGFGMALLG---CNVITTDQ-IEVLPLLKRNVEWNT 109 (222)
Q Consensus 62 ~~~~~~vLelGcG~G~~~i~la~~g---~~v~~~D~-~~~l~~~~~n~~~n~ 109 (222)
..++...+|.--|.|--+-.+.... .+++++|. +++++.+++.+...+
T Consensus 21 ~~~~giyiD~TlG~GGHS~~iL~~l~~~~~li~~DrD~~Ai~~a~~~l~~~~ 72 (314)
T COG0275 21 PKPDGIYIDGTLGAGGHSRAILEKLPDLGRLIGIDRDPQAIAIAKERLKEFD 72 (314)
T ss_pred cCCCcEEEEecCCCcHhHHHHHHhCCCCCeEEEEcCCHHHHHHHHHHhhccC
Confidence 4456789999999887776666543 46999999 679999999887543
No 465
>PRK15116 sulfur acceptor protein CsdL; Provisional
Probab=74.82 E-value=16 Score=30.31 Aligned_cols=34 Identities=21% Similarity=0.234 Sum_probs=25.3
Q ss_pred CCCCCeEEEeCCCc-cH-HHHHHHHhC-CEEEEecch
Q 027530 62 KLKGKRVIELGAGC-GV-AGFGMALLG-CNVITTDQI 95 (222)
Q Consensus 62 ~~~~~~vLelGcG~-G~-~~i~la~~g-~~v~~~D~~ 95 (222)
.+++.+|+=+|||. |. ++..|++.| .+++.+|.+
T Consensus 27 kL~~s~VlVvG~GGVGs~vae~Lar~GVg~itLiD~D 63 (268)
T PRK15116 27 LFADAHICVVGIGGVGSWAAEALARTGIGAITLIDMD 63 (268)
T ss_pred HhcCCCEEEECcCHHHHHHHHHHHHcCCCEEEEEeCC
Confidence 45778999999994 54 455677778 479999864
No 466
>TIGR03366 HpnZ_proposed putative phosphonate catabolism associated alcohol dehydrogenase. This clade of zinc-binding alcohol dehydrogenases (members of pfam00107) are repeatedly associated with genes proposed to be involved with the catabolism of phosphonate compounds.
Probab=74.37 E-value=15 Score=30.18 Aligned_cols=96 Identities=19% Similarity=0.179 Sum_probs=51.4
Q ss_pred CCCCeEEEeCCCc-cHHHHHHHH-hCCE-EEEecc-hhhHHHHHHHHHHhhccccccCCCCCCCCCceEEEEeecCCCcc
Q 027530 63 LKGKRVIELGAGC-GVAGFGMAL-LGCN-VITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSGNLLGSIQAVELDWGNEDH 138 (222)
Q Consensus 63 ~~~~~vLelGcG~-G~~~i~la~-~g~~-v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~ 138 (222)
.++.+||=.|+|. |+..+.+|+ +|++ |+++|. ++-++.+++ .+.. .-+..... ......
T Consensus 119 ~~g~~VlV~G~G~vG~~~~~~ak~~G~~~Vi~~~~~~~r~~~a~~----~Ga~------------~~i~~~~~-~~~~~~ 181 (280)
T TIGR03366 119 LKGRRVLVVGAGMLGLTAAAAAAAAGAARVVAADPSPDRRELALS----FGAT------------ALAEPEVL-AERQGG 181 (280)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHH----cCCc------------EecCchhh-HHHHHH
Confidence 3788999999875 666665664 4776 888886 444444433 1210 00000000 000000
Q ss_pred ccccCCCccEEEEeccccCccCHHHHHHHHHHhcCCCeEEEEEE
Q 027530 139 IKAVAPPFDYIIGTDVVYAEHLLEPLLQTIFALSGPKTTILLGY 182 (222)
Q Consensus 139 ~~~~~~~fD~Ii~~d~~y~~~~~~~ll~~~~~~l~~~g~~~l~~ 182 (222)
. .....+|+++-+ . -....++...+.++++|++++..
T Consensus 182 ~-~~~~g~d~vid~--~----G~~~~~~~~~~~l~~~G~iv~~G 218 (280)
T TIGR03366 182 L-QNGRGVDVALEF--S----GATAAVRACLESLDVGGTAVLAG 218 (280)
T ss_pred H-hCCCCCCEEEEC--C----CChHHHHHHHHHhcCCCEEEEec
Confidence 0 112458888743 1 11345666778889999887654
No 467
>PRK08945 putative oxoacyl-(acyl carrier protein) reductase; Provisional
Probab=74.33 E-value=23 Score=28.08 Aligned_cols=44 Identities=30% Similarity=0.354 Sum_probs=28.1
Q ss_pred CCCCCCeEEEeCCCccHHHHH----HHHhCCEEEEecc-hhhHHHHHHHH
Q 027530 61 SKLKGKRVIELGAGCGVAGFG----MALLGCNVITTDQ-IEVLPLLKRNV 105 (222)
Q Consensus 61 ~~~~~~~vLelGcG~G~~~i~----la~~g~~v~~~D~-~~~l~~~~~n~ 105 (222)
...++++||=.|+..| +|.. +++.|++|+++|. .+.++.+.+.+
T Consensus 8 ~~~~~k~vlItG~~g~-iG~~la~~l~~~G~~Vi~~~r~~~~~~~~~~~l 56 (247)
T PRK08945 8 DLLKDRIILVTGAGDG-IGREAALTYARHGATVILLGRTEEKLEAVYDEI 56 (247)
T ss_pred cccCCCEEEEeCCCch-HHHHHHHHHHHCCCcEEEEeCCHHHHHHHHHHH
Confidence 4568899999996544 4443 3445889999997 44444443333
No 468
>PRK07533 enoyl-(acyl carrier protein) reductase; Provisional
Probab=74.28 E-value=19 Score=29.00 Aligned_cols=34 Identities=24% Similarity=0.308 Sum_probs=24.2
Q ss_pred CCCCCeEEEeCCCc--cH---HHHHHHHhCCEEEEecch
Q 027530 62 KLKGKRVIELGAGC--GV---AGFGMALLGCNVITTDQI 95 (222)
Q Consensus 62 ~~~~~~vLelGcG~--G~---~~i~la~~g~~v~~~D~~ 95 (222)
.++|+++|=.|++. |+ ++..+++.|++|+.+|..
T Consensus 7 ~~~~k~~lItGas~g~GIG~a~a~~la~~G~~v~l~~r~ 45 (258)
T PRK07533 7 PLAGKRGLVVGIANEQSIAWGCARAFRALGAELAVTYLN 45 (258)
T ss_pred ccCCCEEEEECCCCCCcHHHHHHHHHHHcCCEEEEEeCC
Confidence 46789999999874 32 333455668999988863
No 469
>KOG2539 consensus Mitochondrial/chloroplast ribosome small subunit component [Translation, ribosomal structure and biogenesis]
Probab=74.11 E-value=11 Score=33.65 Aligned_cols=111 Identities=14% Similarity=0.184 Sum_probs=60.1
Q ss_pred CCCCCCeEEEeCCCccHHHHHHHHh--C--CEEEEecch-hhHHHHHHHHHHhhccccccCCCCCCCCCceEEEEeecCC
Q 027530 61 SKLKGKRVIELGAGCGVAGFGMALL--G--CNVITTDQI-EVLPLLKRNVEWNTSRISQMNPGSGNLLGSIQAVELDWGN 135 (222)
Q Consensus 61 ~~~~~~~vLelGcG~G~~~i~la~~--g--~~v~~~D~~-~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~v~~~~~d~~~ 135 (222)
+.++-..++|+|+|.|.-+-++..+ + ..++.+|.+ .|+.....+++. +... ..+.+..+...+
T Consensus 197 p~f~pd~~~dfgsg~~~~~~a~~~lwr~t~~~~~~Vdrs~~~~~~~e~~lr~-~~~~-----------g~~~v~~~~~~r 264 (491)
T KOG2539|consen 197 PKFRPDLLRDFGSGAGNGGWAAVLLWRQTKREYSLVDRSRAMLKQSEKNLRD-GSHI-----------GEPIVRKLVFHR 264 (491)
T ss_pred cccChHHHHHHHhhcccchhhhhhhcccccceeEeeccchHHHHHHHHhhcC-hhhc-----------Cchhccccchhc
Confidence 4455568999999987654444333 2 248899984 477777666653 2110 111111111111
Q ss_pred CccccccCCCccEEEEeccccCccC---HHHHHHHHHHh-cCCCeEEEEEEE
Q 027530 136 EDHIKAVAPPFDYIIGTDVVYAEHL---LEPLLQTIFAL-SGPKTTILLGYE 183 (222)
Q Consensus 136 ~~~~~~~~~~fD~Ii~~d~~y~~~~---~~~ll~~~~~~-l~~~g~~~l~~~ 183 (222)
-.........||+||++-.+++... ...+.+.+.+. .++|+.+++...
T Consensus 265 ~~~pi~~~~~yDlvi~ah~l~~~~s~~~R~~v~~s~~r~~~r~g~~lViIe~ 316 (491)
T KOG2539|consen 265 QRLPIDIKNGYDLVICAHKLHELGSKFSRLDVPESLWRKTDRSGYFLVIIEK 316 (491)
T ss_pred ccCCCCcccceeeEEeeeeeeccCCchhhhhhhHHHHHhccCCCceEEEEec
Confidence 1111122456999999988876432 33344444443 567777666554
No 470
>TIGR02354 thiF_fam2 thiamine biosynthesis protein ThiF, family 2. Members of the HesA/MoeB/ThiF family of proteins (pfam00899) include a number of members encoded in the midst of thiamine biosynthetic operons. This mix of known and putative ThiF proteins shows a deep split in phylogenetic trees, with one the E. coli ThiF and the E. coli MoeB proteins seemingly more closely related than E. coli ThiF and Campylobacter (for example) ThiF. This model represents the divergent clade of putative ThiF proteins such found in Campylobacter.
Probab=73.99 E-value=41 Score=26.41 Aligned_cols=34 Identities=29% Similarity=0.332 Sum_probs=25.9
Q ss_pred CCCCCeEEEeCCCc-cH-HHHHHHHhCC-EEEEecch
Q 027530 62 KLKGKRVIELGAGC-GV-AGFGMALLGC-NVITTDQI 95 (222)
Q Consensus 62 ~~~~~~vLelGcG~-G~-~~i~la~~g~-~v~~~D~~ 95 (222)
.++.++|+=+|||. |. ++..+++.|. +++.+|.+
T Consensus 18 ~L~~~~V~IvG~GglGs~ia~~La~~Gvg~i~lvD~D 54 (200)
T TIGR02354 18 KLEQATVAICGLGGLGSNVAINLARAGIGKLILVDFD 54 (200)
T ss_pred HHhCCcEEEECcCHHHHHHHHHHHHcCCCEEEEECCC
Confidence 34668999999995 43 5567777887 69999964
No 471
>cd08232 idonate-5-DH L-idonate 5-dehydrogenase. L-idonate 5-dehydrogenase (L-ido 5-DH ) catalyzes the conversion of L-lodonate to 5-ketogluconate in the metabolism of L-Idonate to 6-P-gluconate. In E. coli, this GntII pathway is a subsidiary pathway to the canonical GntI system, which also phosphorylates and transports gluconate. L-ido 5-DH is found in an operon with a regulator indR, transporter idnT, 5-keto-D-gluconate 5-reductase, and Gnt kinase. L-ido 5-DH is a zinc-dependent alcohol dehydrogenase-like protein. The alcohol dehydrogenase ADH-like family of proteins is a diverse group of proteins related to the first identified member, class I mammalian ADH. This group is also called the medium chain dehydrogenases/reductase family (MDR) which displays a broad range of activities and are distinguished from the smaller short chain dehydrogenases(~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domai
Probab=73.86 E-value=51 Score=27.48 Aligned_cols=93 Identities=20% Similarity=0.247 Sum_probs=49.7
Q ss_pred CCCeEEEeCCCc-cHHHHHHHH-hCC-EEEEecc-hhhHHHHHHHHHHhhccccccCCCCCCCCCceEEEEeecCCCccc
Q 027530 64 KGKRVIELGAGC-GVAGFGMAL-LGC-NVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSGNLLGSIQAVELDWGNEDHI 139 (222)
Q Consensus 64 ~~~~vLelGcG~-G~~~i~la~-~g~-~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~ 139 (222)
++.+||-.|||. |...+.+++ +|. +|++++. ++..+.+++ ...+. -+.....++ ...
T Consensus 165 ~~~~VLI~g~g~vG~~~~~lak~~G~~~v~~~~~s~~~~~~~~~-~g~~~---------------vi~~~~~~~---~~~ 225 (339)
T cd08232 165 AGKRVLVTGAGPIGALVVAAARRAGAAEIVATDLADAPLAVARA-MGADE---------------TVNLARDPL---AAY 225 (339)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHcCCcEEEEECCCHHHHHHHHH-cCCCE---------------EEcCCchhh---hhh
Confidence 788999888774 555554554 577 7899987 444444332 11100 000000000 011
Q ss_pred cccCCCccEEEEeccccCccCHHHHHHHHHHhcCCCeEEEEE
Q 027530 140 KAVAPPFDYIIGTDVVYAEHLLEPLLQTIFALSGPKTTILLG 181 (222)
Q Consensus 140 ~~~~~~fD~Ii~~d~~y~~~~~~~ll~~~~~~l~~~g~~~l~ 181 (222)
......+|+++.+-- ....++.+.+.|+++|+++..
T Consensus 226 ~~~~~~vd~vld~~g------~~~~~~~~~~~L~~~G~~v~~ 261 (339)
T cd08232 226 AADKGDFDVVFEASG------APAALASALRVVRPGGTVVQV 261 (339)
T ss_pred hccCCCccEEEECCC------CHHHHHHHHHHHhcCCEEEEE
Confidence 111245899986421 123566677888889987754
No 472
>PRK15057 UDP-glucose 6-dehydrogenase; Provisional
Probab=73.80 E-value=61 Score=28.33 Aligned_cols=36 Identities=17% Similarity=0.225 Sum_probs=21.6
Q ss_pred EEEeCCCc-cHHHHHHHHhCCEEEEecc-hhhHHHHHH
Q 027530 68 VIELGAGC-GVAGFGMALLGCNVITTDQ-IEVLPLLKR 103 (222)
Q Consensus 68 vLelGcG~-G~~~i~la~~g~~v~~~D~-~~~l~~~~~ 103 (222)
|-=+|.|. |+....+...|.+|+++|. ++.++.+++
T Consensus 3 I~VIGlGyvGl~~A~~lA~G~~VigvD~d~~kv~~l~~ 40 (388)
T PRK15057 3 ITISGTGYVGLSNGLLIAQNHEVVALDILPSRVAMLND 40 (388)
T ss_pred EEEECCCHHHHHHHHHHHhCCcEEEEECCHHHHHHHHc
Confidence 34457774 5433333334888999998 556665544
No 473
>PLN02662 cinnamyl-alcohol dehydrogenase family protein
Probab=73.75 E-value=16 Score=30.41 Aligned_cols=76 Identities=16% Similarity=0.089 Sum_probs=41.4
Q ss_pred CCCeEEEeCCCccHHHHHHHH----hCCEEEEecch-hhHHHHHHHHHHhhccccccCCCCCCCCCceEEEEeecCCCcc
Q 027530 64 KGKRVIELGAGCGVAGFGMAL----LGCNVITTDQI-EVLPLLKRNVEWNTSRISQMNPGSGNLLGSIQAVELDWGNEDH 138 (222)
Q Consensus 64 ~~~~vLelGcG~G~~~i~la~----~g~~v~~~D~~-~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~ 138 (222)
++++||=.|+ +|.+|..+++ .|.+|++++.+ +............. ...++.+...|..+...
T Consensus 3 ~~~~ilVtGa-tGfIG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~------------~~~~~~~~~~Dl~~~~~ 69 (322)
T PLN02662 3 EGKVVCVTGA-SGYIASWLVKLLLQRGYTVKATVRDPNDPKKTEHLLALDG------------AKERLHLFKANLLEEGS 69 (322)
T ss_pred CCCEEEEECC-hHHHHHHHHHHHHHCCCEEEEEEcCCCchhhHHHHHhccC------------CCCceEEEeccccCcch
Confidence 4578888885 5677766553 48888887753 22111111111111 01367778877776543
Q ss_pred ccccCCCccEEEEe
Q 027530 139 IKAVAPPFDYIIGT 152 (222)
Q Consensus 139 ~~~~~~~fD~Ii~~ 152 (222)
....-..+|.||..
T Consensus 70 ~~~~~~~~d~Vih~ 83 (322)
T PLN02662 70 FDSVVDGCEGVFHT 83 (322)
T ss_pred HHHHHcCCCEEEEe
Confidence 32222457888654
No 474
>KOG1205 consensus Predicted dehydrogenase [Secondary metabolites biosynthesis, transport and catabolism]
Probab=73.69 E-value=18 Score=30.20 Aligned_cols=83 Identities=19% Similarity=0.312 Sum_probs=56.9
Q ss_pred CCCCCCeEEEeCCCccH---HHHHHHHhCCEEEEecc-hhhHHHHHHHHHHhhccccccCCCCCCCCCceEEEEeecCCC
Q 027530 61 SKLKGKRVIELGAGCGV---AGFGMALLGCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSGNLLGSIQAVELDWGNE 136 (222)
Q Consensus 61 ~~~~~~~vLelGcG~G~---~~i~la~~g~~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~v~~~~~d~~~~ 136 (222)
....|+.||==||-+|+ ++..+++.|++++.+-. .+-++...+-++..+.. .++.+.++|..+.
T Consensus 8 e~~~~kvVvITGASsGIG~~lA~~la~~G~~l~lvar~~rrl~~v~~~l~~~~~~------------~~v~~~~~Dvs~~ 75 (282)
T KOG1205|consen 8 ERLAGKVVLITGASSGIGEALAYELAKRGAKLVLVARRARRLERVAEELRKLGSL------------EKVLVLQLDVSDE 75 (282)
T ss_pred HHhCCCEEEEeCCCcHHHHHHHHHHHhCCCceEEeehhhhhHHHHHHHHHHhCCc------------CccEEEeCccCCH
Confidence 45688999999999986 55566778998777765 55666665555554421 1588899998887
Q ss_pred cccc-------ccCCCccEEEEeccc
Q 027530 137 DHIK-------AVAPPFDYIIGTDVV 155 (222)
Q Consensus 137 ~~~~-------~~~~~fD~Ii~~d~~ 155 (222)
++.+ ..-+..|+.|.|--+
T Consensus 76 ~~~~~~~~~~~~~fg~vDvLVNNAG~ 101 (282)
T KOG1205|consen 76 ESVKKFVEWAIRHFGRVDVLVNNAGI 101 (282)
T ss_pred HHHHHHHHHHHHhcCCCCEEEecCcc
Confidence 6533 234679999876433
No 475
>cd08265 Zn_ADH3 Alcohol dehydrogenases of the MDR family. This group resembles the zinc-dependent alcohol dehydrogenase and has the catalytic and structural zinc-binding sites characteristic of this group. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanedi
Probab=73.66 E-value=14 Score=31.88 Aligned_cols=33 Identities=33% Similarity=0.451 Sum_probs=21.9
Q ss_pred CCCCCeEEEeCCCc-cHHHHHHHH-hCC-EEEEecc
Q 027530 62 KLKGKRVIELGAGC-GVAGFGMAL-LGC-NVITTDQ 94 (222)
Q Consensus 62 ~~~~~~vLelGcG~-G~~~i~la~-~g~-~v~~~D~ 94 (222)
..+|.+||=.|+|. |...+.+|+ .|+ +|++++.
T Consensus 201 ~~~g~~VlV~g~g~vG~~ai~lA~~~G~~~vi~~~~ 236 (384)
T cd08265 201 FRPGAYVVVYGAGPIGLAAIALAKAAGASKVIAFEI 236 (384)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEEcC
Confidence 34567887778764 555554554 477 6999986
No 476
>PRK09186 flagellin modification protein A; Provisional
Probab=73.35 E-value=14 Score=29.50 Aligned_cols=78 Identities=23% Similarity=0.218 Sum_probs=44.7
Q ss_pred CCCeEEEeCCCccHH---HHHHHHhCCEEEEecc-hhhHHHHHHHHHHhhccccccCCCCCCCCCceEEEEeecCCCccc
Q 027530 64 KGKRVIELGAGCGVA---GFGMALLGCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSGNLLGSIQAVELDWGNEDHI 139 (222)
Q Consensus 64 ~~~~vLelGcG~G~~---~i~la~~g~~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~ 139 (222)
++++||=.|++.|+- ...+++.|++|++++. ++.++.+...+.... ....+.+...|..+....
T Consensus 3 ~~k~vlItGas~giG~~~a~~l~~~g~~v~~~~r~~~~~~~~~~~l~~~~------------~~~~~~~~~~Dl~d~~~~ 70 (256)
T PRK09186 3 KGKTILITGAGGLIGSALVKAILEAGGIVIAADIDKEALNELLESLGKEF------------KSKKLSLVELDITDQESL 70 (256)
T ss_pred CCCEEEEECCCchHHHHHHHHHHHCCCEEEEEecChHHHHHHHHHHHhhc------------CCCceeEEEecCCCHHHH
Confidence 578899999865542 2234455889999986 444444444443221 012455667777765432
Q ss_pred cc-------cCCCccEEEEec
Q 027530 140 KA-------VAPPFDYIIGTD 153 (222)
Q Consensus 140 ~~-------~~~~fD~Ii~~d 153 (222)
.. .-++.|+||.+-
T Consensus 71 ~~~~~~~~~~~~~id~vi~~A 91 (256)
T PRK09186 71 EEFLSKSAEKYGKIDGAVNCA 91 (256)
T ss_pred HHHHHHHHHHcCCccEEEECC
Confidence 11 124589988664
No 477
>PRK08628 short chain dehydrogenase; Provisional
Probab=73.31 E-value=13 Score=29.85 Aligned_cols=78 Identities=15% Similarity=0.155 Sum_probs=45.7
Q ss_pred CCCCCeEEEeCCCccH---HHHHHHHhCCEEEEecc-hhhHHHHHHHHHHhhccccccCCCCCCCCCceEEEEeecCCCc
Q 027530 62 KLKGKRVIELGAGCGV---AGFGMALLGCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSGNLLGSIQAVELDWGNED 137 (222)
Q Consensus 62 ~~~~~~vLelGcG~G~---~~i~la~~g~~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~v~~~~~d~~~~~ 137 (222)
.++++++|=.|++.|+ ++..+++.|++|+.++. ++..+ ..+.+... ..++.+...|..+..
T Consensus 4 ~l~~~~ilItGasggiG~~la~~l~~~G~~v~~~~r~~~~~~-~~~~~~~~--------------~~~~~~~~~D~~~~~ 68 (258)
T PRK08628 4 NLKDKVVIVTGGASGIGAAISLRLAEEGAIPVIFGRSAPDDE-FAEELRAL--------------QPRAEFVQVDLTDDA 68 (258)
T ss_pred CcCCCEEEEeCCCChHHHHHHHHHHHcCCcEEEEcCChhhHH-HHHHHHhc--------------CCceEEEEccCCCHH
Confidence 4678899999976554 22334456888888886 33332 22222221 135677787877654
Q ss_pred cccc-------cCCCccEEEEecc
Q 027530 138 HIKA-------VAPPFDYIIGTDV 154 (222)
Q Consensus 138 ~~~~-------~~~~fD~Ii~~d~ 154 (222)
.... ..+..|+||.+.-
T Consensus 69 ~~~~~~~~~~~~~~~id~vi~~ag 92 (258)
T PRK08628 69 QCRDAVEQTVAKFGRIDGLVNNAG 92 (258)
T ss_pred HHHHHHHHHHHhcCCCCEEEECCc
Confidence 3211 1246898887654
No 478
>TIGR03201 dearomat_had 6-hydroxycyclohex-1-ene-1-carbonyl-CoA dehydrogenase. Members of this protein family are 6-hydroxycyclohex-1-ene-1-carbonyl-CoA dehydrogenase, an enzyme in the anaerobic metabolism of aromatic enzymes by way of benzoyl-CoA, as seen in Thauera aromatica, Geobacter metallireducens, and Azoarcus sp. The experimentally characterized form from T. aromatica uses only NAD+, not NADP+. Note that Rhodopseudomonas palustris uses a different pathway to perform a similar degradation of benzoyl-CoA to 3-hydroxpimelyl-CoA.
Probab=73.22 E-value=16 Score=30.93 Aligned_cols=41 Identities=37% Similarity=0.430 Sum_probs=28.9
Q ss_pred CCCCCeEEEeCCCc-cHHHHHHHH-hCCEEEEecc-hhhHHHHH
Q 027530 62 KLKGKRVIELGAGC-GVAGFGMAL-LGCNVITTDQ-IEVLPLLK 102 (222)
Q Consensus 62 ~~~~~~vLelGcG~-G~~~i~la~-~g~~v~~~D~-~~~l~~~~ 102 (222)
..+|.+||=+|||. |...+.+|+ .|++|+++|. ++-++.++
T Consensus 164 ~~~g~~VlV~G~G~vG~~a~~~a~~~G~~vi~~~~~~~~~~~~~ 207 (349)
T TIGR03201 164 LKKGDLVIVIGAGGVGGYMVQTAKAMGAAVVAIDIDPEKLEMMK 207 (349)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHcCCeEEEEcCCHHHHHHHH
Confidence 44688999999965 666666664 4778999987 45555543
No 479
>PF01488 Shikimate_DH: Shikimate / quinate 5-dehydrogenase; InterPro: IPR006151 This entry represents a domain found in shikimate and quinate dehydrogenases, as well as glutamyl-tRNA reductases. Shikimate 5-dehydrogenase (1.1.1.25 from EC) catalyses the conversion of shikimate to 5-dehydroshikimate [, ]. This reaction is part of the shikimate pathway which is involved in the biosynthesis of aromatic amino acids []. Quinate 5-dehydrogenase catalyses the conversion of quinate to 5-dehydroquinate. This reaction is part of the quinate pathway where quinic acid is exploited as a source of carbon in prokaryotes and microbial eukaryotes. Both the shikimate and quinate pathways share two common pathway metabolites, 3-dehydroquinate and dehydroshikimate. Glutamyl-tRNA reductase (1.2.1.70 from EC) catalyzes the first step of tetrapyrrole biosynthesis in plants, archaea and most bacteria. The dimeric enzyme has an unusual V-shaped architecture where each monomer consists of three domains linked by a long 'spinal' alpha-helix. The central catalytic domain specifically recognises the glutamate moiety of the substrate []. ; PDB: 2EV9_B 2CY0_B 1WXD_A 2D5C_A 1NVT_B 2EGG_A 3PWZ_A 3DOO_A 3DON_A 3FBT_C ....
Probab=73.18 E-value=12 Score=27.31 Aligned_cols=77 Identities=23% Similarity=0.319 Sum_probs=43.1
Q ss_pred CCCCCCeEEEeCCCc-c-HHHHHHHHhCCE-EEEecc-hhhHHHHHHHHHHhhccccccCCCCCCCCCceEEEEeecCCC
Q 027530 61 SKLKGKRVIELGAGC-G-VAGFGMALLGCN-VITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSGNLLGSIQAVELDWGNE 136 (222)
Q Consensus 61 ~~~~~~~vLelGcG~-G-~~~i~la~~g~~-v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~v~~~~~d~~~~ 136 (222)
..+++++||=||+|- | .....++..|++ |+.+.. .+-.+.+.+.+ .+ ..+.+. .|.+.
T Consensus 8 ~~l~~~~vlviGaGg~ar~v~~~L~~~g~~~i~i~nRt~~ra~~l~~~~--~~--------------~~~~~~--~~~~~ 69 (135)
T PF01488_consen 8 GDLKGKRVLVIGAGGAARAVAAALAALGAKEITIVNRTPERAEALAEEF--GG--------------VNIEAI--PLEDL 69 (135)
T ss_dssp STGTTSEEEEESSSHHHHHHHHHHHHTTSSEEEEEESSHHHHHHHHHHH--TG--------------CSEEEE--EGGGH
T ss_pred CCcCCCEEEEECCHHHHHHHHHHHHHcCCCEEEEEECCHHHHHHHHHHc--Cc--------------ccccee--eHHHH
Confidence 356889999999985 3 333455567875 888886 33222222222 11 123333 34332
Q ss_pred ccccccCCCccEEEEeccccCc
Q 027530 137 DHIKAVAPPFDYIIGTDVVYAE 158 (222)
Q Consensus 137 ~~~~~~~~~fD~Ii~~d~~y~~ 158 (222)
. .....+|+||.+.+.-+.
T Consensus 70 ~---~~~~~~DivI~aT~~~~~ 88 (135)
T PF01488_consen 70 E---EALQEADIVINATPSGMP 88 (135)
T ss_dssp C---HHHHTESEEEE-SSTTST
T ss_pred H---HHHhhCCeEEEecCCCCc
Confidence 2 123579999998776443
No 480
>PRK05875 short chain dehydrogenase; Provisional
Probab=73.08 E-value=14 Score=29.91 Aligned_cols=78 Identities=17% Similarity=0.283 Sum_probs=44.8
Q ss_pred CCCCeEEEeCCCccHHHHH----HHHhCCEEEEecc-hhhHHHHHHHHHHhhccccccCCCCCCCCCceEEEEeecCCCc
Q 027530 63 LKGKRVIELGAGCGVAGFG----MALLGCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSGNLLGSIQAVELDWGNED 137 (222)
Q Consensus 63 ~~~~~vLelGcG~G~~~i~----la~~g~~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~v~~~~~d~~~~~ 137 (222)
++++++|=.|++.|+ |.. +++.|++|++++. ++..+...+.+.... ...++.+...|..+..
T Consensus 5 ~~~k~vlItGasg~I-G~~la~~l~~~G~~V~~~~r~~~~~~~~~~~l~~~~------------~~~~~~~~~~Dl~~~~ 71 (276)
T PRK05875 5 FQDRTYLVTGGGSGI-GKGVAAGLVAAGAAVMIVGRNPDKLAAAAEEIEALK------------GAGAVRYEPADVTDED 71 (276)
T ss_pred CCCCEEEEECCCcHH-HHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHHHhcc------------CCCceEEEEcCCCCHH
Confidence 567899999976553 333 4456889999986 343333333222110 0135677777776654
Q ss_pred cccc-------cCCCccEEEEec
Q 027530 138 HIKA-------VAPPFDYIIGTD 153 (222)
Q Consensus 138 ~~~~-------~~~~fD~Ii~~d 153 (222)
.... ..++.|++|.+-
T Consensus 72 ~~~~~~~~~~~~~~~~d~li~~a 94 (276)
T PRK05875 72 QVARAVDAATAWHGRLHGVVHCA 94 (276)
T ss_pred HHHHHHHHHHHHcCCCCEEEECC
Confidence 3211 123689988654
No 481
>PLN02989 cinnamyl-alcohol dehydrogenase family protein
Probab=73.04 E-value=15 Score=30.64 Aligned_cols=78 Identities=14% Similarity=0.071 Sum_probs=41.5
Q ss_pred CCCeEEEeCCCccHHHHHHHH----hCCEEEEecc-hhhHHHHHHHHHHhhccccccCCCCCCCCCceEEEEeecCCCcc
Q 027530 64 KGKRVIELGAGCGVAGFGMAL----LGCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSGNLLGSIQAVELDWGNEDH 138 (222)
Q Consensus 64 ~~~~vLelGcG~G~~~i~la~----~g~~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~ 138 (222)
.+++||=.|+ +|.+|..+++ .|.+|++++. ++............+ ...++.+...|..+...
T Consensus 4 ~~k~vlVtG~-~G~IG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~------------~~~~~~~~~~D~~d~~~ 70 (325)
T PLN02989 4 GGKVVCVTGA-SGYIASWIVKLLLFRGYTINATVRDPKDRKKTDHLLALDG------------AKERLKLFKADLLDEGS 70 (325)
T ss_pred CCCEEEEECC-chHHHHHHHHHHHHCCCEEEEEEcCCcchhhHHHHHhccC------------CCCceEEEeCCCCCchH
Confidence 3678998884 5666655553 4888887764 222222211111111 11356777777766543
Q ss_pred ccccCCCccEEEEecc
Q 027530 139 IKAVAPPFDYIIGTDV 154 (222)
Q Consensus 139 ~~~~~~~fD~Ii~~d~ 154 (222)
....-...|+|+.+-.
T Consensus 71 ~~~~~~~~d~vih~A~ 86 (325)
T PLN02989 71 FELAIDGCETVFHTAS 86 (325)
T ss_pred HHHHHcCCCEEEEeCC
Confidence 3222235798876543
No 482
>PRK13394 3-hydroxybutyrate dehydrogenase; Provisional
Probab=73.01 E-value=15 Score=29.34 Aligned_cols=79 Identities=22% Similarity=0.322 Sum_probs=45.7
Q ss_pred CCCCeEEEeCCCccH---HHHHHHHhCCEEEEecc-hhhHHHHHHHHHHhhccccccCCCCCCCCCceEEEEeecCCCcc
Q 027530 63 LKGKRVIELGAGCGV---AGFGMALLGCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSGNLLGSIQAVELDWGNEDH 138 (222)
Q Consensus 63 ~~~~~vLelGcG~G~---~~i~la~~g~~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~ 138 (222)
.+++++|=.|+..|+ +...+++.|++|++++. ++..+.+.+.+...+ .++.+...|..+...
T Consensus 5 ~~~~~vlItGasg~iG~~la~~l~~~G~~v~~~~r~~~~~~~~~~~~~~~~--------------~~~~~~~~Dl~~~~~ 70 (262)
T PRK13394 5 LNGKTAVVTGAASGIGKEIALELARAGAAVAIADLNQDGANAVADEINKAG--------------GKAIGVAMDVTNEDA 70 (262)
T ss_pred CCCCEEEEECCCChHHHHHHHHHHHCCCeEEEEeCChHHHHHHHHHHHhcC--------------ceEEEEECCCCCHHH
Confidence 467889988875543 22344556889999987 444444443333221 346667777765543
Q ss_pred cc-------ccCCCccEEEEeccc
Q 027530 139 IK-------AVAPPFDYIIGTDVV 155 (222)
Q Consensus 139 ~~-------~~~~~fD~Ii~~d~~ 155 (222)
.. ...++.|+||.+.-.
T Consensus 71 ~~~~~~~~~~~~~~~d~vi~~ag~ 94 (262)
T PRK13394 71 VNAGIDKVAERFGSVDILVSNAGI 94 (262)
T ss_pred HHHHHHHHHHHcCCCCEEEECCcc
Confidence 21 112468998876544
No 483
>PRK06130 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=72.91 E-value=37 Score=28.36 Aligned_cols=40 Identities=23% Similarity=0.226 Sum_probs=27.6
Q ss_pred CeEEEeCCCc-c-HHHHHHHHhCCEEEEecc-hhhHHHHHHHH
Q 027530 66 KRVIELGAGC-G-VAGFGMALLGCNVITTDQ-IEVLPLLKRNV 105 (222)
Q Consensus 66 ~~vLelGcG~-G-~~~i~la~~g~~v~~~D~-~~~l~~~~~n~ 105 (222)
++|.=||+|. | .++..+++.|.+|++.|. ++.++.+++.+
T Consensus 5 ~~I~vIGaG~mG~~iA~~l~~~g~~V~~~d~~~~~~~~~~~~~ 47 (311)
T PRK06130 5 QNLAIIGAGTMGSGIAALFARKGLQVVLIDVMEGALERARGVI 47 (311)
T ss_pred cEEEEECCCHHHHHHHHHHHhCCCeEEEEECCHHHHHHHHHHH
Confidence 4677788885 3 344556667889999998 55666666543
No 484
>PRK08278 short chain dehydrogenase; Provisional
Probab=72.43 E-value=16 Score=29.83 Aligned_cols=78 Identities=22% Similarity=0.245 Sum_probs=44.4
Q ss_pred CCCCeEEEeCCCccHHH---HHHHHhCCEEEEecc-hhh-------HHHHHHHHHHhhccccccCCCCCCCCCceEEEEe
Q 027530 63 LKGKRVIELGAGCGVAG---FGMALLGCNVITTDQ-IEV-------LPLLKRNVEWNTSRISQMNPGSGNLLGSIQAVEL 131 (222)
Q Consensus 63 ~~~~~vLelGcG~G~~~---i~la~~g~~v~~~D~-~~~-------l~~~~~n~~~n~~~~~~~~~~~~~~~~~v~~~~~ 131 (222)
..++++|=.|++.|+-. ..+++.|++|++++. .+. ++.+.+.+..+ ..++.+...
T Consensus 4 ~~~k~vlItGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~--------------~~~~~~~~~ 69 (273)
T PRK08278 4 LSGKTLFITGASRGIGLAIALRAARDGANIVIAAKTAEPHPKLPGTIHTAAEEIEAA--------------GGQALPLVG 69 (273)
T ss_pred CCCCEEEEECCCchHHHHHHHHHHHCCCEEEEEecccccccchhhHHHHHHHHHHhc--------------CCceEEEEe
Confidence 46789999998766522 234456889998886 221 22222222211 235677777
Q ss_pred ecCCCccccc-------cCCCccEEEEecc
Q 027530 132 DWGNEDHIKA-------VAPPFDYIIGTDV 154 (222)
Q Consensus 132 d~~~~~~~~~-------~~~~fD~Ii~~d~ 154 (222)
|..+...... .-+++|++|.+--
T Consensus 70 D~~~~~~i~~~~~~~~~~~g~id~li~~ag 99 (273)
T PRK08278 70 DVRDEDQVAAAVAKAVERFGGIDICVNNAS 99 (273)
T ss_pred cCCCHHHHHHHHHHHHHHhCCCCEEEECCC
Confidence 7776543211 1147899887643
No 485
>PRK07889 enoyl-(acyl carrier protein) reductase; Provisional
Probab=72.42 E-value=17 Score=29.38 Aligned_cols=74 Identities=22% Similarity=0.285 Sum_probs=41.9
Q ss_pred CCCCeEEEeCCC-ccHHHHH----HHHhCCEEEEecch---hhHHHHHHHHHHhhccccccCCCCCCCCCceEEEEeecC
Q 027530 63 LKGKRVIELGAG-CGVAGFG----MALLGCNVITTDQI---EVLPLLKRNVEWNTSRISQMNPGSGNLLGSIQAVELDWG 134 (222)
Q Consensus 63 ~~~~~vLelGcG-~G~~~i~----la~~g~~v~~~D~~---~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~v~~~~~d~~ 134 (222)
++++++|=.|+| ++-+|.. +++.|++|+.++.+ +.++.+.+.+. ..+.+...|..
T Consensus 5 ~~~k~~lItGa~~s~GIG~a~a~~la~~G~~v~l~~r~~~~~~~~~~~~~~~-----------------~~~~~~~~Dv~ 67 (256)
T PRK07889 5 LEGKRILVTGVITDSSIAFHVARVAQEQGAEVVLTGFGRALRLTERIAKRLP-----------------EPAPVLELDVT 67 (256)
T ss_pred ccCCEEEEeCCCCcchHHHHHHHHHHHCCCEEEEecCccchhHHHHHHHhcC-----------------CCCcEEeCCCC
Confidence 567899999984 3333444 44568999998853 22232222111 13455666776
Q ss_pred CCcccc-------ccCCCccEEEEec
Q 027530 135 NEDHIK-------AVAPPFDYIIGTD 153 (222)
Q Consensus 135 ~~~~~~-------~~~~~fD~Ii~~d 153 (222)
+.+... ..-+++|++|.+-
T Consensus 68 ~~~~i~~~~~~~~~~~g~iD~li~nA 93 (256)
T PRK07889 68 NEEHLASLADRVREHVDGLDGVVHSI 93 (256)
T ss_pred CHHHHHHHHHHHHHHcCCCcEEEEcc
Confidence 654321 1125789988764
No 486
>COG0240 GpsA Glycerol-3-phosphate dehydrogenase [Energy production and conversion]
Probab=72.23 E-value=28 Score=29.76 Aligned_cols=101 Identities=17% Similarity=0.130 Sum_probs=54.2
Q ss_pred eEEEeCCCc-cH-HHHHHHHhCCEEEEecc-hhhHHHHHHHHHHhhccccccCCCCCCCCCceEE-EEeecCCCcccccc
Q 027530 67 RVIELGAGC-GV-AGFGMALLGCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSGNLLGSIQA-VELDWGNEDHIKAV 142 (222)
Q Consensus 67 ~vLelGcG~-G~-~~i~la~~g~~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~v~~-~~~d~~~~~~~~~~ 142 (222)
+|-=||+|. |. ++..+++.|+.|+.-.. ++.++.+..+ +.|..-+ ..+.+ ..+.+. .++...
T Consensus 3 kI~ViGaGswGTALA~~la~ng~~V~lw~r~~~~~~~i~~~-~~N~~yL-----------p~i~lp~~l~at--~Dl~~a 68 (329)
T COG0240 3 KIAVIGAGSWGTALAKVLARNGHEVRLWGRDEEIVAEINET-RENPKYL-----------PGILLPPNLKAT--TDLAEA 68 (329)
T ss_pred eEEEEcCChHHHHHHHHHHhcCCeeEEEecCHHHHHHHHhc-CcCcccc-----------CCccCCcccccc--cCHHHH
Confidence 566788886 64 66677777888777665 5555544433 3332111 01111 011111 111122
Q ss_pred CCCccEEEEeccccCccCHHHHHHHHHHhcCCCeEEEEEEEE
Q 027530 143 APPFDYIIGTDVVYAEHLLEPLLQTIFALSGPKTTILLGYEI 184 (222)
Q Consensus 143 ~~~fD~Ii~~d~~y~~~~~~~ll~~~~~~l~~~g~~~l~~~~ 184 (222)
-..+|+|+..=+- ..+..+++.+...++++-.++.+.+.
T Consensus 69 ~~~ad~iv~avPs---~~~r~v~~~l~~~l~~~~~iv~~sKG 107 (329)
T COG0240 69 LDGADIIVIAVPS---QALREVLRQLKPLLLKDAIIVSATKG 107 (329)
T ss_pred HhcCCEEEEECCh---HHHHHHHHHHhhhccCCCeEEEEecc
Confidence 3448888776442 34566777777677777777766654
No 487
>PRK07024 short chain dehydrogenase; Provisional
Probab=71.96 E-value=15 Score=29.49 Aligned_cols=74 Identities=16% Similarity=0.157 Sum_probs=42.3
Q ss_pred CeEEEeCCCccH---HHHHHHHhCCEEEEecc-hhhHHHHHHHHHHhhccccccCCCCCCCCCceEEEEeecCCCcccc-
Q 027530 66 KRVIELGAGCGV---AGFGMALLGCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSGNLLGSIQAVELDWGNEDHIK- 140 (222)
Q Consensus 66 ~~vLelGcG~G~---~~i~la~~g~~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~- 140 (222)
++||=.|+..|+ +...+++.|++|+.+|. ++.++...+.+.. ..++.+..+|..+.....
T Consensus 3 ~~vlItGas~gIG~~la~~l~~~G~~v~~~~r~~~~~~~~~~~~~~---------------~~~~~~~~~Dl~~~~~i~~ 67 (257)
T PRK07024 3 LKVFITGASSGIGQALAREYARQGATLGLVARRTDALQAFAARLPK---------------AARVSVYAADVRDADALAA 67 (257)
T ss_pred CEEEEEcCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHhccc---------------CCeeEEEEcCCCCHHHHHH
Confidence 578888876554 22334456889999997 4443333222210 115677788887654321
Q ss_pred ------ccCCCccEEEEecc
Q 027530 141 ------AVAPPFDYIIGTDV 154 (222)
Q Consensus 141 ------~~~~~fD~Ii~~d~ 154 (222)
...+..|++|.+--
T Consensus 68 ~~~~~~~~~g~id~lv~~ag 87 (257)
T PRK07024 68 AAADFIAAHGLPDVVIANAG 87 (257)
T ss_pred HHHHHHHhCCCCCEEEECCC
Confidence 11245899987643
No 488
>cd08261 Zn_ADH7 Alcohol dehydrogenases of the MDR family. This group contains members identified as related to zinc-dependent alcohol dehydrogenase and other members of the MDR family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group includes various activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase,
Probab=71.80 E-value=32 Score=28.75 Aligned_cols=40 Identities=33% Similarity=0.394 Sum_probs=25.5
Q ss_pred CCCCCeEEEeCCCc-cHHHHHHHH-hCCEEEEecc-hhhHHHH
Q 027530 62 KLKGKRVIELGAGC-GVAGFGMAL-LGCNVITTDQ-IEVLPLL 101 (222)
Q Consensus 62 ~~~~~~vLelGcG~-G~~~i~la~-~g~~v~~~D~-~~~l~~~ 101 (222)
..+|.+||-.|+|. |...+.+|+ .|.+|+++.. ++..+.+
T Consensus 157 l~~g~~vLI~g~g~vG~~a~~lA~~~g~~v~~~~~s~~~~~~~ 199 (337)
T cd08261 157 VTAGDTVLVVGAGPIGLGVIQVAKARGARVIVVDIDDERLEFA 199 (337)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHcCCeEEEECCCHHHHHHH
Confidence 45678999998763 555555554 4888888864 4444444
No 489
>KOG0780 consensus Signal recognition particle, subunit Srp54 [Intracellular trafficking, secretion, and vesicular transport]
Probab=71.75 E-value=40 Score=29.66 Aligned_cols=93 Identities=14% Similarity=0.097 Sum_probs=56.3
Q ss_pred HHHHHHHHhCCE--EEEecc--hhhHHHHHHHHHHhhccccccCCCCCCCCCceEEEEeecCCCcc--------ccccCC
Q 027530 77 VAGFGMALLGCN--VITTDQ--IEVLPLLKRNVEWNTSRISQMNPGSGNLLGSIQAVELDWGNEDH--------IKAVAP 144 (222)
Q Consensus 77 ~~~i~la~~g~~--v~~~D~--~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~--------~~~~~~ 144 (222)
-++.++.+.|.+ .++-|- .-+.++++.|+.+.+.+ +.. .+.+.+. ..+..+
T Consensus 120 KlA~y~kkkG~K~~LvcaDTFRagAfDQLkqnA~k~~iP----------------~yg-syte~dpv~ia~egv~~fKke 182 (483)
T KOG0780|consen 120 KLAYYYKKKGYKVALVCADTFRAGAFDQLKQNATKARVP----------------FYG-SYTEADPVKIASEGVDRFKKE 182 (483)
T ss_pred HHHHHHHhcCCceeEEeecccccchHHHHHHHhHhhCCe----------------eEe-cccccchHHHHHHHHHHHHhc
Confidence 445556667886 567784 56999999999877643 221 1111111 123467
Q ss_pred CccEEEEeccccCccCHHHHHH---HHHHhcCCCeEEEEEEEEcCh
Q 027530 145 PFDYIIGTDVVYAEHLLEPLLQ---TIFALSGPKTTILLGYEIRST 187 (222)
Q Consensus 145 ~fD~Ii~~d~~y~~~~~~~ll~---~~~~~l~~~g~~~l~~~~r~~ 187 (222)
.||+||..-.--|. .-..|+. .+.+.++|+-++++.+..-..
T Consensus 183 ~fdvIIvDTSGRh~-qe~sLfeEM~~v~~ai~Pd~vi~VmDasiGQ 227 (483)
T KOG0780|consen 183 NFDVIIVDTSGRHK-QEASLFEEMKQVSKAIKPDEIIFVMDASIGQ 227 (483)
T ss_pred CCcEEEEeCCCchh-hhHHHHHHHHHHHhhcCCCeEEEEEeccccH
Confidence 89999976554332 2233444 455568899999887764433
No 490
>PF05050 Methyltransf_21: Methyltransferase FkbM domain; InterPro: IPR007744 This entry contains proteins of unknown function.; PDB: 2PY6_A.
Probab=71.71 E-value=11 Score=27.77 Aligned_cols=40 Identities=25% Similarity=0.283 Sum_probs=25.8
Q ss_pred EeCCCcc--HHHHHHH--Hh--CCEEEEecc-hhhHHHHHHH--HHHhh
Q 027530 70 ELGAGCG--VAGFGMA--LL--GCNVITTDQ-IEVLPLLKRN--VEWNT 109 (222)
Q Consensus 70 elGcG~G--~~~i~la--~~--g~~v~~~D~-~~~l~~~~~n--~~~n~ 109 (222)
|+|++.| ......+ .. +.+|+++|. +..++.+++| +..|.
T Consensus 1 DvGA~~G~~~~~~~~~~~~~~~~~~v~~~Ep~p~~~~~l~~~~~~~l~~ 49 (167)
T PF05050_consen 1 DVGANIGFWSSTVYFLEKKCGPGGRVHAFEPNPSNFEKLKRNLNLALND 49 (167)
T ss_dssp EES-TTS--HHHHHHHHHHTS--SEEEEE---HHHHHHHHHH--HHHTT
T ss_pred CcccCCChhHHHHHHHHHHcCCCCEEEEEECCHHHHHHHhHHHHHHhcC
Confidence 8999999 4434332 23 457999997 7788999999 66663
No 491
>COG0300 DltE Short-chain dehydrogenases of various substrate specificities [General function prediction only]
Probab=71.45 E-value=24 Score=29.21 Aligned_cols=79 Identities=22% Similarity=0.346 Sum_probs=54.2
Q ss_pred CCCCCeEEEeCCCccH---HHHHHHHhCCEEEEecc-hhhHHHHHHHHHHhhccccccCCCCCCCCCceEEEEeecCCCc
Q 027530 62 KLKGKRVIELGAGCGV---AGFGMALLGCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSGNLLGSIQAVELDWGNED 137 (222)
Q Consensus 62 ~~~~~~vLelGcG~G~---~~i~la~~g~~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~v~~~~~d~~~~~ 137 (222)
...++++|=-|+-.|+ ++-.+|+.|.+|+.+-. .+-++.+.+.++... ...+.+...|..+..
T Consensus 3 ~~~~~~~lITGASsGIG~~~A~~lA~~g~~liLvaR~~~kL~~la~~l~~~~-------------~v~v~vi~~DLs~~~ 69 (265)
T COG0300 3 PMKGKTALITGASSGIGAELAKQLARRGYNLILVARREDKLEALAKELEDKT-------------GVEVEVIPADLSDPE 69 (265)
T ss_pred CCCCcEEEEECCCchHHHHHHHHHHHCCCEEEEEeCcHHHHHHHHHHHHHhh-------------CceEEEEECcCCChh
Confidence 3467889999988886 33455667899999987 556777777666543 246788888888775
Q ss_pred cccc-------cCCCccEEEEec
Q 027530 138 HIKA-------VAPPFDYIIGTD 153 (222)
Q Consensus 138 ~~~~-------~~~~fD~Ii~~d 153 (222)
.... .....|++|-|-
T Consensus 70 ~~~~l~~~l~~~~~~IdvLVNNA 92 (265)
T COG0300 70 ALERLEDELKERGGPIDVLVNNA 92 (265)
T ss_pred HHHHHHHHHHhcCCcccEEEECC
Confidence 4321 124789888653
No 492
>cd08233 butanediol_DH_like (2R,3R)-2,3-butanediol dehydrogenase. (2R,3R)-2,3-butanediol dehydrogenase, a zinc-dependent medium chain alcohol dehydrogenase, catalyzes the NAD(+)-dependent oxidation of (2R,3R)-2,3-butanediol and meso-butanediol to acetoin. BDH functions as a homodimer. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit. Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose. Sorbitol dehydrogenase is tetrameric and has a single catalytic zinc per subunit.
Probab=71.34 E-value=33 Score=28.97 Aligned_cols=40 Identities=23% Similarity=0.254 Sum_probs=25.0
Q ss_pred CCCCCeEEEeCCCc-cHHHHHHHH-hCC-EEEEecc-hhhHHHH
Q 027530 62 KLKGKRVIELGAGC-GVAGFGMAL-LGC-NVITTDQ-IEVLPLL 101 (222)
Q Consensus 62 ~~~~~~vLelGcG~-G~~~i~la~-~g~-~v~~~D~-~~~l~~~ 101 (222)
..+|.+||=.|+|. |...+.+|+ +|+ +|++++. ++-.+.+
T Consensus 170 ~~~g~~vlI~g~g~vG~~a~q~a~~~G~~~v~~~~~~~~~~~~~ 213 (351)
T cd08233 170 FKPGDTALVLGAGPIGLLTILALKAAGASKIIVSEPSEARRELA 213 (351)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEECCCHHHHHHH
Confidence 34678888888753 444444443 477 7888886 4445544
No 493
>PRK06200 2,3-dihydroxy-2,3-dihydrophenylpropionate dehydrogenase; Provisional
Probab=71.32 E-value=19 Score=28.96 Aligned_cols=76 Identities=20% Similarity=0.264 Sum_probs=43.3
Q ss_pred CCCCeEEEeCCCccHH---HHHHHHhCCEEEEecc-hhhHHHHHHHHHHhhccccccCCCCCCCCCceEEEEeecCCCcc
Q 027530 63 LKGKRVIELGAGCGVA---GFGMALLGCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSGNLLGSIQAVELDWGNEDH 138 (222)
Q Consensus 63 ~~~~~vLelGcG~G~~---~i~la~~g~~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~ 138 (222)
++++++|=.|++.|+- +..+++.|++|++++. ++.++.+.+.. + .++.+...|..+...
T Consensus 4 ~~~k~vlVtGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~---~--------------~~~~~~~~D~~~~~~ 66 (263)
T PRK06200 4 LHGQVALITGGGSGIGRALVERFLAEGARVAVLERSAEKLASLRQRF---G--------------DHVLVVEGDVTSYAD 66 (263)
T ss_pred CCCCEEEEeCCCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHh---C--------------CcceEEEccCCCHHH
Confidence 4678999999876652 2334556899999987 33333322211 1 235556666655432
Q ss_pred cc-------ccCCCccEEEEeccc
Q 027530 139 IK-------AVAPPFDYIIGTDVV 155 (222)
Q Consensus 139 ~~-------~~~~~fD~Ii~~d~~ 155 (222)
.. ...+..|++|.+--+
T Consensus 67 ~~~~~~~~~~~~g~id~li~~ag~ 90 (263)
T PRK06200 67 NQRAVDQTVDAFGKLDCFVGNAGI 90 (263)
T ss_pred HHHHHHHHHHhcCCCCEEEECCCC
Confidence 21 112468888876443
No 494
>PRK07453 protochlorophyllide oxidoreductase; Validated
Probab=71.30 E-value=12 Score=31.42 Aligned_cols=77 Identities=22% Similarity=0.329 Sum_probs=44.2
Q ss_pred CCCeEEEeCCCccHH---HHHHHHhCCEEEEecc-hhhHHHHHHHHHHhhccccccCCCCCCCCCceEEEEeecCCCccc
Q 027530 64 KGKRVIELGAGCGVA---GFGMALLGCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSGNLLGSIQAVELDWGNEDHI 139 (222)
Q Consensus 64 ~~~~vLelGcG~G~~---~i~la~~g~~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~ 139 (222)
.++++|=.|+..|+- ...+++.|++|++++. .+-.+.+.+.+... ..++.+..+|..+....
T Consensus 5 ~~k~vlVTGas~gIG~~~a~~L~~~G~~V~~~~r~~~~~~~~~~~l~~~--------------~~~~~~~~~Dl~~~~~v 70 (322)
T PRK07453 5 AKGTVIITGASSGVGLYAAKALAKRGWHVIMACRNLKKAEAAAQELGIP--------------PDSYTIIHIDLGDLDSV 70 (322)
T ss_pred CCCEEEEEcCCChHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHhhcc--------------CCceEEEEecCCCHHHH
Confidence 567899998765542 2234456889999986 33333333322211 13567778787765432
Q ss_pred c-------ccCCCccEEEEecc
Q 027530 140 K-------AVAPPFDYIIGTDV 154 (222)
Q Consensus 140 ~-------~~~~~fD~Ii~~d~ 154 (222)
. ....+.|++|.+--
T Consensus 71 ~~~~~~~~~~~~~iD~li~nAg 92 (322)
T PRK07453 71 RRFVDDFRALGKPLDALVCNAA 92 (322)
T ss_pred HHHHHHHHHhCCCccEEEECCc
Confidence 1 11246899987643
No 495
>PLN03209 translocon at the inner envelope of chloroplast subunit 62; Provisional
Probab=71.19 E-value=27 Score=32.30 Aligned_cols=86 Identities=17% Similarity=0.141 Sum_probs=47.4
Q ss_pred CCCCCCeEEEeCCCccHHHHHH----HHhCCEEEEecc-hhhHHHHHHHHHHhhccccccCCCCCCCCCceEEEEeecCC
Q 027530 61 SKLKGKRVIELGAGCGVAGFGM----ALLGCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSGNLLGSIQAVELDWGN 135 (222)
Q Consensus 61 ~~~~~~~vLelGcG~G~~~i~l----a~~g~~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~v~~~~~d~~~ 135 (222)
....|++||=.|+. |.+|..+ ++.|++|++++. .+-+..+..++....+... .. ....++.++.+|..+
T Consensus 76 ~~~~gKvVLVTGAT-GgIG~aLAr~LLk~G~~Vval~Rn~ekl~~l~~~l~~~~L~~~--Ga---~~~~~v~iV~gDLtD 149 (576)
T PLN03209 76 DTKDEDLAFVAGAT-GKVGSRTVRELLKLGFRVRAGVRSAQRAESLVQSVKQMKLDVE--GT---QPVEKLEIVECDLEK 149 (576)
T ss_pred ccCCCCEEEEECCC-CHHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHhhhhccccc--cc---cccCceEEEEecCCC
Confidence 34577888888875 4445443 345889998886 4434333333332111000 00 011357888888876
Q ss_pred CccccccCCCccEEEEe
Q 027530 136 EDHIKAVAPPFDYIIGT 152 (222)
Q Consensus 136 ~~~~~~~~~~fD~Ii~~ 152 (222)
.+.....-+..|+||.+
T Consensus 150 ~esI~~aLggiDiVVn~ 166 (576)
T PLN03209 150 PDQIGPALGNASVVICC 166 (576)
T ss_pred HHHHHHHhcCCCEEEEc
Confidence 55433333568988876
No 496
>PRK07201 short chain dehydrogenase; Provisional
Probab=71.02 E-value=14 Score=34.18 Aligned_cols=79 Identities=23% Similarity=0.288 Sum_probs=47.8
Q ss_pred CCCCCeEEEeCCCccHH---HHHHHHhCCEEEEecc-hhhHHHHHHHHHHhhccccccCCCCCCCCCceEEEEeecCCCc
Q 027530 62 KLKGKRVIELGAGCGVA---GFGMALLGCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSGNLLGSIQAVELDWGNED 137 (222)
Q Consensus 62 ~~~~~~vLelGcG~G~~---~i~la~~g~~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~v~~~~~d~~~~~ 137 (222)
.++++++|=.|++.|+- ...+++.|++|++++. ++.++.+.+.+... ..++.+...|..+.+
T Consensus 368 ~~~~k~vlItGas~giG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~--------------~~~~~~~~~Dv~~~~ 433 (657)
T PRK07201 368 PLVGKVVLITGASSGIGRATAIKVAEAGATVFLVARNGEALDELVAEIRAK--------------GGTAHAYTCDLTDSA 433 (657)
T ss_pred CCCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhc--------------CCcEEEEEecCCCHH
Confidence 45688899999876542 2234456889999987 44444443333321 135677787877654
Q ss_pred cccc-------cCCCccEEEEecc
Q 027530 138 HIKA-------VAPPFDYIIGTDV 154 (222)
Q Consensus 138 ~~~~-------~~~~fD~Ii~~d~ 154 (222)
.... .-+..|++|.+--
T Consensus 434 ~~~~~~~~~~~~~g~id~li~~Ag 457 (657)
T PRK07201 434 AVDHTVKDILAEHGHVDYLVNNAG 457 (657)
T ss_pred HHHHHHHHHHHhcCCCCEEEECCC
Confidence 3221 1246899987654
No 497
>PRK06914 short chain dehydrogenase; Provisional
Probab=71.02 E-value=25 Score=28.50 Aligned_cols=79 Identities=23% Similarity=0.197 Sum_probs=44.6
Q ss_pred CCCeEEEeCCCccHHH---HHHHHhCCEEEEecc-hhhHHHHHHHHHHhhccccccCCCCCCCCCceEEEEeecCCCccc
Q 027530 64 KGKRVIELGAGCGVAG---FGMALLGCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSGNLLGSIQAVELDWGNEDHI 139 (222)
Q Consensus 64 ~~~~vLelGcG~G~~~---i~la~~g~~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~ 139 (222)
.++++|=.|+..|+-. ..++..|++|++++. ++.++...+.+...+ ...++.+...|..+....
T Consensus 2 ~~k~~lItGasg~iG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~------------~~~~~~~~~~D~~d~~~~ 69 (280)
T PRK06914 2 NKKIAIVTGASSGFGLLTTLELAKKGYLVIATMRNPEKQENLLSQATQLN------------LQQNIKVQQLDVTDQNSI 69 (280)
T ss_pred CCCEEEEECCCchHHHHHHHHHHhCCCEEEEEeCCHHHHHHHHHHHHhcC------------CCCceeEEecCCCCHHHH
Confidence 3567898997655422 234456889999886 444443333332211 123577778787765432
Q ss_pred c------ccCCCccEEEEecc
Q 027530 140 K------AVAPPFDYIIGTDV 154 (222)
Q Consensus 140 ~------~~~~~fD~Ii~~d~ 154 (222)
. ..-++.|+|+.+.-
T Consensus 70 ~~~~~~~~~~~~id~vv~~ag 90 (280)
T PRK06914 70 HNFQLVLKEIGRIDLLVNNAG 90 (280)
T ss_pred HHHHHHHHhcCCeeEEEECCc
Confidence 1 11246788887643
No 498
>PF01210 NAD_Gly3P_dh_N: NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus; InterPro: IPR011128 NAD-dependent glycerol-3-phosphate dehydrogenase (GPDH) catalyses the interconversion of dihydroxyacetone phosphate and L-glycerol-3-phosphate. This family represents the N-terminal NAD-binding domain [].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0046168 glycerol-3-phosphate catabolic process, 0055114 oxidation-reduction process, 0005737 cytoplasm; PDB: 1YJ8_B 2PLA_A 1WPQ_B 1X0V_A 1X0X_A 1BG6_A 1TXG_B 1N1G_A 1M67_A 1JDJ_A ....
Probab=70.78 E-value=18 Score=27.07 Aligned_cols=99 Identities=16% Similarity=0.110 Sum_probs=50.5
Q ss_pred EEEeCCCccH--HHHHHHHhCCEEEEecc-hhhHHHHHHHHHHhhccccccCCCCCCCCCceEEEEeecCCCccccccCC
Q 027530 68 VIELGAGCGV--AGFGMALLGCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSGNLLGSIQAVELDWGNEDHIKAVAP 144 (222)
Q Consensus 68 vLelGcG~G~--~~i~la~~g~~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~ 144 (222)
|.=||+|.+- ++..++..|.+|+.... ++.++.++++-. |....... ....++.+. . +....-.
T Consensus 2 I~ViGaG~~G~AlA~~la~~g~~V~l~~~~~~~~~~i~~~~~-n~~~~~~~-----~l~~~i~~t----~---dl~~a~~ 68 (157)
T PF01210_consen 2 IAVIGAGNWGTALAALLADNGHEVTLWGRDEEQIEEINETRQ-NPKYLPGI-----KLPENIKAT----T---DLEEALE 68 (157)
T ss_dssp EEEESSSHHHHHHHHHHHHCTEEEEEETSCHHHHHHHHHHTS-ETTTSTTS-----BEETTEEEE----S---SHHHHHT
T ss_pred EEEECcCHHHHHHHHHHHHcCCEEEEEeccHHHHHHHHHhCC-CCCCCCCc-----ccCcccccc----c---CHHHHhC
Confidence 4557888643 33345566888999987 445555554322 21110000 011233332 1 1111224
Q ss_pred CccEEEEeccccCccCHHHHHHHHHHhcCCCeEEEEEE
Q 027530 145 PFDYIIGTDVVYAEHLLEPLLQTIFALSGPKTTILLGY 182 (222)
Q Consensus 145 ~fD~Ii~~d~~y~~~~~~~ll~~~~~~l~~~g~~~l~~ 182 (222)
..|+|+.+=+- ..++.+++.+..+++++-.+++..
T Consensus 69 ~ad~IiiavPs---~~~~~~~~~l~~~l~~~~~ii~~~ 103 (157)
T PF01210_consen 69 DADIIIIAVPS---QAHREVLEQLAPYLKKGQIIISAT 103 (157)
T ss_dssp T-SEEEE-S-G---GGHHHHHHHHTTTSHTT-EEEETS
T ss_pred cccEEEecccH---HHHHHHHHHHhhccCCCCEEEEec
Confidence 67888766442 346788999999887776665543
No 499
>PRK08644 thiamine biosynthesis protein ThiF; Provisional
Probab=70.73 E-value=43 Score=26.56 Aligned_cols=34 Identities=35% Similarity=0.336 Sum_probs=25.0
Q ss_pred CCCCCeEEEeCCCc-cH-HHHHHHHhCC-EEEEecch
Q 027530 62 KLKGKRVIELGAGC-GV-AGFGMALLGC-NVITTDQI 95 (222)
Q Consensus 62 ~~~~~~vLelGcG~-G~-~~i~la~~g~-~v~~~D~~ 95 (222)
.+++.+|+=+|||. |. +...+++.|. +++.+|.+
T Consensus 25 ~L~~~~V~ViG~GglGs~ia~~La~~Gvg~i~lvD~D 61 (212)
T PRK08644 25 KLKKAKVGIAGAGGLGSNIAVALARSGVGNLKLVDFD 61 (212)
T ss_pred HHhCCCEEEECcCHHHHHHHHHHHHcCCCeEEEEeCC
Confidence 34678999999995 43 5556777787 58888864
No 500
>PRK07454 short chain dehydrogenase; Provisional
Probab=70.66 E-value=25 Score=27.75 Aligned_cols=77 Identities=18% Similarity=0.128 Sum_probs=44.4
Q ss_pred CCCeEEEeCCCccHHHHHH----HHhCCEEEEecc-hhhHHHHHHHHHHhhccccccCCCCCCCCCceEEEEeecCCCcc
Q 027530 64 KGKRVIELGAGCGVAGFGM----ALLGCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSGNLLGSIQAVELDWGNEDH 138 (222)
Q Consensus 64 ~~~~vLelGcG~G~~~i~l----a~~g~~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~ 138 (222)
.++++|=.|+. |.+|..+ ++.|.+|++++. ++..+.+.+.+... ..++.+...|..+.+.
T Consensus 5 ~~k~vlItG~s-g~iG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~--------------~~~~~~~~~D~~~~~~ 69 (241)
T PRK07454 5 SMPRALITGAS-SGIGKATALAFAKAGWDLALVARSQDALEALAAELRST--------------GVKAAAYSIDLSNPEA 69 (241)
T ss_pred CCCEEEEeCCC-chHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhC--------------CCcEEEEEccCCCHHH
Confidence 45788999964 4444444 446889999997 33333333333211 1356777777776543
Q ss_pred ccc-------cCCCccEEEEeccc
Q 027530 139 IKA-------VAPPFDYIIGTDVV 155 (222)
Q Consensus 139 ~~~-------~~~~fD~Ii~~d~~ 155 (222)
... .-++.|++|.+.-.
T Consensus 70 ~~~~~~~~~~~~~~id~lv~~ag~ 93 (241)
T PRK07454 70 IAPGIAELLEQFGCPDVLINNAGM 93 (241)
T ss_pred HHHHHHHHHHHcCCCCEEEECCCc
Confidence 211 12468999876544
Done!