BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 027531
(222 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|4DOI|A Chain A, Crystal Structure Of Arabidopsis Thaliana Chalcone
Isomerase At3g55120 (Atchi)
pdb|4DOI|B Chain B, Crystal Structure Of Arabidopsis Thaliana Chalcone
Isomerase At3g55120 (Atchi)
Length = 246
Score = 303 bits (775), Expect = 6e-83, Method: Compositional matrix adjust.
Identities = 149/220 (67%), Positives = 181/220 (82%), Gaps = 1/220 (0%)
Query: 2 NPSPSVTELQVENVTFTPSVQPPGSTKSHFLGGAGERGLEIEGKFVKFTAIGVYLEDDAV 61
+P P+VT+L V++VTF PSV+ P S+ FLGGAG RGL+I+GKFV FT IGVYLE +AV
Sbjct: 11 SPFPAVTKLHVDSVTFVPSVKSPASSNPLFLGGAGVRGLDIQGKFVIFTVIGVYLEGNAV 70
Query: 62 PLLAGKWKGKTAEELTESVEFFRDVVTGPFEKFMKVTMILPLTGAQYSEKVAENCIAIWK 121
P L+ KWKGKT EELTES+ FFR++VTG FEKF+KVTM LPLTG QYSEKV ENC+AIWK
Sbjct: 71 PSLSVKWKGKTTEELTESIPFFREIVTGAFEKFIKVTMKLPLTGQQYSEKVTENCVAIWK 130
Query: 122 FFGIYTDAEAKAIEKFTEVFKDEIFPPGSSILFTQSP-GSLTISFSKDGSIPKDGVAVIE 180
G+YTD EAKA+EKF E+FK+E FPPGSSILF SP GSLT++FSKD SIP+ G+AVIE
Sbjct: 131 QLGLYTDCEAKAVEKFLEIFKEETFPPGSSILFALSPTGSLTVAFSKDDSIPETGIAVIE 190
Query: 181 SNLLSEAVLESMIGKNGVSPAAKKSLAERISALLNVTSDK 220
+ LL+EAVLES+IGKNGVSP + S+AER+S L+ D+
Sbjct: 191 NKLLAEAVLESIIGKNGVSPGTRLSVAERLSQLMMKNKDE 230
>pdb|1EYP|A Chain A, Chalcone Isomerase
pdb|1EYP|B Chain B, Chalcone Isomerase
pdb|1EYQ|A Chain A, Chalcone Isomerase And Naringenin
pdb|1EYQ|B Chain B, Chalcone Isomerase And Naringenin
pdb|1JEP|A Chain A, Chalcone Isomerase Complexed With 4'-Hydroxyflavanone
pdb|1JEP|B Chain B, Chalcone Isomerase Complexed With 4'-Hydroxyflavanone
pdb|1FM8|A Chain A, Chalcone Isomerase Complexed With 5,4'-Dideoxyflavanone
pdb|1FM8|B Chain B, Chalcone Isomerase Complexed With 5,4'-Dideoxyflavanone
pdb|1FM7|A Chain A, Chalcone Isomerase Complexed With 5-Deoxyflavanone
pdb|1FM7|B Chain B, Chalcone Isomerase Complexed With 5-Deoxyflavanone
Length = 222
Score = 236 bits (602), Expect = 8e-63, Method: Compositional matrix adjust.
Identities = 118/211 (55%), Positives = 156/211 (73%), Gaps = 1/211 (0%)
Query: 6 SVTELQVENVTFTPSVQPPGSTKSHFLGGAGERGLEIEGKFVKFTAIGVYLEDDAVPLLA 65
S+T + VEN+ + V P + KS+FLGGAGERGL IEG F+KFTAIGVYLED AV LA
Sbjct: 4 SITAITVENLEYPAVVTSPVTGKSYFLGGAGERGLTIEGNFIKFTAIGVYLEDIAVASLA 63
Query: 66 GKWKGKTAEELTESVEFFRDVVTGPFEKFMKVTMILPLTGAQYSEKVAENCIAIWKFFGI 125
KWKGK++EEL E+++F+RD+++GPFEK ++ + I L+G +YS KV ENC+A K G
Sbjct: 64 AKWKGKSSEELLETLDFYRDIISGPFEKLIRGSKIRELSGPEYSRKVMENCVAHLKSVGT 123
Query: 126 YTDAEAKAIEKFTEVFKDEIFPPGSSILFTQSP-GSLTISFSKDGSIPKDGVAVIESNLL 184
Y DAEA+A++KF E FK FPPG+S+ + QSP G L +SFS D SIP+ A+IE+ +
Sbjct: 124 YGDAEAEAMQKFAEAFKPVNFPPGASVFYRQSPDGILGLSFSPDTSIPEKEAALIENKAV 183
Query: 185 SEAVLESMIGKNGVSPAAKKSLAERISALLN 215
S AVLE+MIG++ VSP K+ LA R+ ALLN
Sbjct: 184 SSAVLETMIGEHAVSPDLKRCLAARLPALLN 214
>pdb|1JX1|A Chain A, Chalcone Isomerase--T48a Mutant
pdb|1JX1|B Chain B, Chalcone Isomerase--T48a Mutant
pdb|1JX1|C Chain C, Chalcone Isomerase--T48a Mutant
pdb|1JX1|D Chain D, Chalcone Isomerase--T48a Mutant
pdb|1JX1|E Chain E, Chalcone Isomerase--T48a Mutant
pdb|1JX1|F Chain F, Chalcone Isomerase--T48a Mutant
Length = 222
Score = 234 bits (597), Expect = 3e-62, Method: Compositional matrix adjust.
Identities = 117/211 (55%), Positives = 155/211 (73%), Gaps = 1/211 (0%)
Query: 6 SVTELQVENVTFTPSVQPPGSTKSHFLGGAGERGLEIEGKFVKFTAIGVYLEDDAVPLLA 65
S+T + VEN+ + V P + KS+FLGGAGERGL IEG F+KF AIGVYLED AV LA
Sbjct: 4 SITAITVENLEYPAVVTSPVTGKSYFLGGAGERGLTIEGNFIKFAAIGVYLEDIAVASLA 63
Query: 66 GKWKGKTAEELTESVEFFRDVVTGPFEKFMKVTMILPLTGAQYSEKVAENCIAIWKFFGI 125
KWKGK++EEL E+++F+RD+++GPFEK ++ + I L+G +YS KV ENC+A K G
Sbjct: 64 AKWKGKSSEELLETLDFYRDIISGPFEKLIRGSKIRELSGPEYSRKVMENCVAHLKSVGT 123
Query: 126 YTDAEAKAIEKFTEVFKDEIFPPGSSILFTQSP-GSLTISFSKDGSIPKDGVAVIESNLL 184
Y DAEA+A++KF E FK FPPG+S+ + QSP G L +SFS D SIP+ A+IE+ +
Sbjct: 124 YGDAEAEAMQKFAEAFKPVNFPPGASVFYRQSPDGILGLSFSPDTSIPEKEAALIENKAV 183
Query: 185 SEAVLESMIGKNGVSPAAKKSLAERISALLN 215
S AVLE+MIG++ VSP K+ LA R+ ALLN
Sbjct: 184 SSAVLETMIGEHAVSPDLKRCLAARLPALLN 214
>pdb|1JX0|A Chain A, Chalcone Isomerase--y106f Mutant
pdb|1JX0|B Chain B, Chalcone Isomerase--y106f Mutant
Length = 222
Score = 234 bits (597), Expect = 3e-62, Method: Compositional matrix adjust.
Identities = 117/211 (55%), Positives = 156/211 (73%), Gaps = 1/211 (0%)
Query: 6 SVTELQVENVTFTPSVQPPGSTKSHFLGGAGERGLEIEGKFVKFTAIGVYLEDDAVPLLA 65
S+T + VEN+ + V P + KS+FLGGAGERGL IEG F+KFTAIGVYLED AV LA
Sbjct: 4 SITAITVENLEYPAVVTSPVTGKSYFLGGAGERGLTIEGNFIKFTAIGVYLEDIAVASLA 63
Query: 66 GKWKGKTAEELTESVEFFRDVVTGPFEKFMKVTMILPLTGAQYSEKVAENCIAIWKFFGI 125
KWKGK++EEL E+++F+RD+++GPFEK ++ + I L+G ++S KV ENC+A K G
Sbjct: 64 AKWKGKSSEELLETLDFYRDIISGPFEKLIRGSKIRELSGPEFSRKVMENCVAHLKSVGT 123
Query: 126 YTDAEAKAIEKFTEVFKDEIFPPGSSILFTQSP-GSLTISFSKDGSIPKDGVAVIESNLL 184
Y DAEA+A++KF E FK FPPG+S+ + QSP G L +SFS D SIP+ A+IE+ +
Sbjct: 124 YGDAEAEAMQKFAEAFKPVNFPPGASVFYRQSPDGILGLSFSPDTSIPEKEAALIENKAV 183
Query: 185 SEAVLESMIGKNGVSPAAKKSLAERISALLN 215
S AVLE+MIG++ VSP K+ LA R+ ALLN
Sbjct: 184 SSAVLETMIGEHAVSPDLKRCLAARLPALLN 214
>pdb|4DOK|A Chain A, Crystal Structure Of Arabidopsis Thaliana
Chalcone-Isomerase Like Protein At5g05270 (Atchil)
pdb|4DOK|B Chain B, Crystal Structure Of Arabidopsis Thaliana
Chalcone-Isomerase Like Protein At5g05270 (Atchil)
Length = 208
Score = 71.2 bits (173), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 64/207 (30%), Positives = 97/207 (46%), Gaps = 6/207 (2%)
Query: 10 LQVENVTFTPSVQPPGSTKSHFLGGAGERGLEIEGKFVKFTAIGVYLEDDAVPLLAGKWK 69
+ V V F P + ++K L G G +EI VKFTAIGVYL+ V WK
Sbjct: 5 VMVHEVPFPPQII---TSKPLSLLGQGITDIEIHFLQVKFTAIGVYLDPSDVKTHLDNWK 61
Query: 70 GKTAEELTESVEFFRDVVTGPFEKFMKVTMILPLTGAQYSEKVAENCIAIWKFFGIYTDA 129
GKT +EL +FF + + EK ++V +I + GAQY ++ Y +
Sbjct: 62 GKTGKELAGDDDFFDALASAEMEKVIRVVVIKEIKGAQYGVQLENTVRDRLAEEDKYEEE 121
Query: 130 EAKAIEKFTEVFKDEIFPPGSSIL--FTQSPGSLTISFSKDGSIPKDGVAVIESNLLSEA 187
E +EK F+ + F S I F+ G I F +G ++ + V +N++
Sbjct: 122 EETELEKVVGFFQSKYFKANSVITYHFSAKDGICEIGFETEGK-EEEKLKVENANVVGMM 180
Query: 188 VLESMIGKNGVSPAAKKSLAERISALL 214
+ G GVSP+ S+A+ ISA+L
Sbjct: 181 QRWYLSGSRGVSPSTIVSIADSISAVL 207
>pdb|4DOL|A Chain A, Crystal Structure Of Arabidopsis Thaliana Fatty-Acid
Binding Protein At1g53520 (Atfap3)
Length = 217
Score = 61.6 bits (148), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 54/205 (26%), Positives = 92/205 (44%), Gaps = 12/205 (5%)
Query: 14 NVTFTPSVQPPGSTKSHFLGGAGERGLEIEGKF----VKFTAIGVYLEDDAVPLLAGKWK 69
+V F SV PG + L G G R E KF VK A G Y+ + + L+ W
Sbjct: 20 SVKFKRSVTLPGCSSPLSLLGTGFR----EKKFAIIGVKVYAAGYYVNESILSGLSA-WT 74
Query: 70 GKTAEELTESVEFFRDVVTGPFEKFMKVTMILPLTGAQYSEKVAENCIAIWKFFGIYTDA 129
G++A+E+ F + EK +++ ++ + G + + + E AI +
Sbjct: 75 GRSADEIQRDSSLFVSIFQAQAEKSLQIVLVRDVDGKTFWDALDE---AISPRIKSPSSE 131
Query: 130 EAKAIEKFTEVFKDEIFPPGSSILFTQSPGSLTISFSKDGSIPKDGVAVIESNLLSEAVL 189
+ A+ F +F++ GS IL T S + G +P + A IES ++ A+
Sbjct: 132 DTTALSTFCCIFQNRPLNKGSVILLTWINTSNMLVSVSSGGLPTNVDATIESGNVTSALF 191
Query: 190 ESMIGKNGVSPAAKKSLAERISALL 214
+ G + VSP K S+A +++ L
Sbjct: 192 DVFFGDSPVSPTLKSSVANQLAMTL 216
>pdb|4DOO|A Chain A, Crystal Structure Of Arabidopsis Thaliana Fatty-Acid
Binding Protein At3g63170 (Atfap1)
pdb|4DOO|B Chain B, Crystal Structure Of Arabidopsis Thaliana Fatty-Acid
Binding Protein At3g63170 (Atfap1)
Length = 205
Score = 48.9 bits (115), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 52/200 (26%), Positives = 92/200 (46%), Gaps = 21/200 (10%)
Query: 23 PPGSTKSHFLGGAGERGLEIEG-KFVKFTAIGVYLE-DDAVPLLAGKWKGKTAEELTESV 80
P S L G G R + G K + A GVY + DD L+ K+ A E+ +
Sbjct: 15 PASIGDSRRLLGVGLRKKSLLGLKNIDVYAFGVYADCDDVKKLVGDKYANLPASEIRGNK 74
Query: 81 EFFRDVVTGPFEKFMKVTMILPLTGAQYSEKVAENCIA------IWKFFGIYTDAEAKAI 134
F D++ E +K+T+ L + + + + N + KF G D + +
Sbjct: 75 SFMDDLM----EADIKMTIRLQIVYGKLNIRSVRNAFQESVGNRLKKFGGSDND---ELL 127
Query: 135 EKFTEVFKDEI-FPPGSSILFTQSPGSLTISFSKDGSIPKDGVAVIESNLLSEAVLESMI 193
+ FT +FKDE P S+I T+ PG + +S + +G+ V ++S+LL ++L+ I
Sbjct: 128 QSFTSLFKDEYKIPRNSTIDLTKDPGHV-LSVAIEGN----HVGSVKSHLLCRSILDLYI 182
Query: 194 GKNGVSPAAKKSLAERISAL 213
G+ A++ + ++L
Sbjct: 183 GEEPFDKNAREDFLDNAASL 202
>pdb|2WSC|J Chain J, Improved Model Of Plant Photosystem I
pdb|2WSE|J Chain J, Improved Model Of Plant Photosystem I
pdb|2WSF|J Chain J, Improved Model Of Plant Photosystem I
Length = 44
Score = 28.1 bits (61), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 14/33 (42%), Positives = 17/33 (51%)
Query: 62 PLLAGKWKGKTAEELTESVEFFRDVVTGPFEKF 94
P+L+ W G A L E FF D +T PF F
Sbjct: 12 PVLSTLWFGSLAGLLIEINRFFPDALTFPFFSF 44
>pdb|1KTR|L Chain L, Crystal Structure Of The Anti-His Tag Antibody 3d5 Single-
Chain Fragment (Scfv) In Complex With A Oligohistidine
Peptide
Length = 116
Score = 27.3 bits (59), Expect = 7.7, Method: Compositional matrix adjust.
Identities = 22/71 (30%), Positives = 33/71 (46%), Gaps = 6/71 (8%)
Query: 152 ILFTQSPGSLTISFSKDGSIP-KDGVAVIESNLLSEAVLESMIGKNGVSPAAKKSLAERI 210
IL TQ+P SL +S SI + +++ SN LE + K G SP K L ++
Sbjct: 5 ILMTQTPSSLPVSLGDQASISCRSSQSIVHSN--GNTYLEWYLQKPGQSP---KLLIYKV 59
Query: 211 SALLNVTSDKM 221
S + D+
Sbjct: 60 SNRFSGVPDRF 70
>pdb|2XAA|A Chain A, Alcohol Dehydrogenase Adh-'a' From Rhodococcus Ruber Dsm
44541 At Ph 8.5 In Complex With Nad And Butane-1,4-Diol
pdb|2XAA|B Chain B, Alcohol Dehydrogenase Adh-'a' From Rhodococcus Ruber Dsm
44541 At Ph 8.5 In Complex With Nad And Butane-1,4-Diol
pdb|2XAA|C Chain C, Alcohol Dehydrogenase Adh-'a' From Rhodococcus Ruber Dsm
44541 At Ph 8.5 In Complex With Nad And Butane-1,4-Diol
pdb|2XAA|D Chain D, Alcohol Dehydrogenase Adh-'a' From Rhodococcus Ruber Dsm
44541 At Ph 8.5 In Complex With Nad And Butane-1,4-Diol
pdb|3JV7|A Chain A, Structure Of Adh-A From Rhodococcus Ruber
pdb|3JV7|B Chain B, Structure Of Adh-A From Rhodococcus Ruber
pdb|3JV7|C Chain C, Structure Of Adh-A From Rhodococcus Ruber
pdb|3JV7|D Chain D, Structure Of Adh-A From Rhodococcus Ruber
Length = 345
Score = 26.9 bits (58), Expect = 8.6, Method: Compositional matrix adjust.
Identities = 28/113 (24%), Positives = 44/113 (38%), Gaps = 9/113 (7%)
Query: 24 PGSTKSHF-LGGAGERGLEIEGKFVKFTAIGVYLEDDAVPLLAGKWKGKTAEELTESVEF 82
PGST +GG G G++I I V L+DD + L + + +
Sbjct: 171 PGSTAVVIGVGGLGHVGIQILRAVSAARVIAVDLDDDRLALAREVGADAAVKSGAGAADA 230
Query: 83 FRDVVTGPFEKFMKVTMILPLTGAQYSEKVAENCIAI---WKFFGIYTDAEAK 132
R++ G T + GAQ + A+ +A+ GI+ A AK
Sbjct: 231 IRELTGG-----QGATAVFDFVGAQSTIDTAQQVVAVDGHISVVGIHAGAHAK 278
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.314 0.132 0.372
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 6,562,836
Number of Sequences: 62578
Number of extensions: 267457
Number of successful extensions: 637
Number of sequences better than 100.0: 20
Number of HSP's better than 100.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 13
Number of HSP's that attempted gapping in prelim test: 623
Number of HSP's gapped (non-prelim): 20
length of query: 222
length of database: 14,973,337
effective HSP length: 95
effective length of query: 127
effective length of database: 9,028,427
effective search space: 1146610229
effective search space used: 1146610229
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 49 (23.5 bits)