Query 027531
Match_columns 222
No_of_seqs 106 out of 317
Neff 6.7
Searched_HMMs 46136
Date Fri Mar 29 11:19:43 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/027531.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/027531hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN02559 chalcone--flavonone i 100.0 2.5E-57 5.4E-62 382.9 23.9 217 5-221 2-219 (230)
2 PLN02804 chalcone isomerase 100.0 4.4E-54 9.5E-59 361.3 21.6 202 8-214 2-206 (206)
3 PLN02311 chalcone isomerase 100.0 2.6E-53 5.7E-58 370.1 23.8 199 12-215 72-271 (271)
4 PF02431 Chalcone: Chalcone-fl 100.0 2.5E-49 5.5E-54 333.2 19.5 195 17-213 1-199 (199)
5 PLN03175 hypothetical protein; 100.0 2.5E-47 5.4E-52 344.6 21.9 198 12-217 212-415 (415)
6 PLN03174 Chalcone-flavanone is 100.0 7.3E-45 1.6E-49 318.4 21.3 192 12-216 82-278 (278)
7 PF11720 Inhibitor_I78: Peptid 50.5 9.1 0.0002 25.9 1.2 25 145-169 28-52 (60)
8 PF04036 DUF372: Domain of unk 47.4 13 0.00028 23.2 1.4 25 186-211 12-36 (38)
9 PF02541 Ppx-GppA: Ppx/GppA ph 43.3 2.2E+02 0.0048 24.7 9.9 124 83-216 47-175 (285)
10 COG4075 Uncharacterized conser 38.7 95 0.0021 23.6 5.1 61 51-120 28-90 (110)
11 COG0248 GppA Exopolyphosphatas 30.3 2.5E+02 0.0053 27.2 7.8 123 81-213 62-193 (492)
12 TIGR03161 ribazole_CobZ alpha- 29.2 62 0.0013 26.0 3.0 40 179-219 10-49 (140)
13 PF02933 CDC48_2: Cell divisio 23.6 66 0.0014 21.6 2.0 32 134-165 7-38 (64)
14 PF08040 NADH_oxidored: MNLL s 23.3 28 0.0006 23.8 0.0 24 49-73 20-43 (59)
15 TIGR00789 flhB_rel flhB C-term 20.7 2.4E+02 0.0051 20.4 4.5 39 176-215 41-79 (82)
No 1
>PLN02559 chalcone--flavonone isomerase
Probab=100.00 E-value=2.5e-57 Score=382.85 Aligned_cols=217 Identities=74% Similarity=1.146 Sum_probs=209.5
Q ss_pred CCcceEEeeceecCCcccCCCCCCceeeeeeeeeeeeEcCeeEEEEEEEEeecCCCCchhhhcccCCChhhhhcchHHHH
Q 027531 5 PSVTELQVENVTFTPSVQPPGSTKSHFLGGAGERGLEIEGKFVKFTAIGVYLEDDAVPLLAGKWKGKTAEELTESVEFFR 84 (222)
Q Consensus 5 ~~~~~~~v~gv~FP~~i~~~~~~~~L~L~GaGvR~k~i~~~~~kVYa~GlY~~~~~~~~l~~~~~g~~~~~l~~~~~~~~ 84 (222)
+++..++|+||+||+.++.|+++++|.|.|+|+|.+.|.++++|+||+|+|+++.+...|+.+|+|++++||.+|.+||+
T Consensus 2 ~~~~~v~ve~i~FP~~v~~p~s~~~l~L~GaG~Rg~eI~~~~vKftAiGvYle~~av~~L~~KWKGKsa~EL~~~~~Ff~ 81 (230)
T PLN02559 2 PAVTEVQVEGVTFPPSVKPPGSSNPLFLGGAGVRGLEIQGKFIKFTAIGVYLEGNAVPSLAKKWKGKTAEELADSVAFFR 81 (230)
T ss_pred CccceEeEcceecCCcccCCCCCCceEEEeccccceEEeeEEEEEEEEEEEechhHHHHHHHhhCCcCHHHHhcCHHHHH
Confidence 46678999999999999999988999999999999999999999999999999997788999999999999999999999
Q ss_pred HhhcCCcceEEEEEEEecCChhhHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHhccCCCCCCCCEEEEEEeC-CceEE
Q 027531 85 DVVTGPFEKFMKVTMILPLTGAQYSEKVAENCIAIWKFFGIYTDAEAKAIEKFTEVFKDEIFPPGSSILFTQSP-GSLTI 163 (222)
Q Consensus 85 ~li~~~~~k~iriv~~r~v~~~~f~~al~e~l~~~~~~~g~~~~~~~~~L~~f~~~F~~~~l~kG~~i~l~~~p-g~l~v 163 (222)
+|+.+|++|.+|++++++++|.+|++++++++.+|+++.|.++++|.++|++|.++|+++++|||+.|+|+|.| |.|.+
T Consensus 82 div~~p~EK~~rV~~I~~l~G~qy~~kv~e~~~a~~ks~g~y~daE~~aLekF~~~Fk~~~fp~Gs~I~ft~sp~g~L~i 161 (230)
T PLN02559 82 DVVTGDFEKFTRVTMILPLTGEQYSEKVTENCVAIWKSLGIYTDAEAKAVEKFKEAFKEETFPPGSSILFTHSPTGSLTV 161 (230)
T ss_pred HHHcCcchhhEEEEEEEeccccchHHHHhHHHHHHHHhcCCcchhHHHHHHHHHHHhcCCCCCCCCEEEEEECCCCcEEE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999 89999
Q ss_pred EEeeCCCCCccceeeecCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHHcccCCcC
Q 027531 164 SFSKDGSIPKDGVAVIESNLLSEAVLESMIGKNGVSPAAKKSLAERISALLNVTSDKM 221 (222)
Q Consensus 164 ~~~~~g~~~~~~~g~I~~~~~~~aL~~~yLG~~Pvs~~lK~s~~~~l~~ll~~~~~~~ 221 (222)
+|+++|++|....++|+|.++|+|+|++|||++||||++|+++|++|++||++++..+
T Consensus 162 sfs~dg~ipe~~~~~Ienk~l~eAv~e~~IG~~~VSP~aK~slA~~la~ll~~~~~~~ 219 (230)
T PLN02559 162 AFSKDSSVPEVGNAVIENKLLCEAVLESIIGKHGVSPAAKLSLAARLSELLKKEKEGE 219 (230)
T ss_pred EEecCCCCCccceEEEechHHHHHHHHHHccCCCCCHHHHHHHHHHHHHHHhccCccc
Confidence 9999999999999999999999999999999999999999999999999999876543
No 2
>PLN02804 chalcone isomerase
Probab=100.00 E-value=4.4e-54 Score=361.31 Aligned_cols=202 Identities=33% Similarity=0.538 Sum_probs=191.4
Q ss_pred ceEEeeceecCCcccCCCCCCceeeeeeeeeeeeEcCeeEEEEEEEEeecCCCCchhhhcccCCChhhhhcchHHHHHhh
Q 027531 8 TELQVENVTFTPSVQPPGSTKSHFLGGAGERGLEIEGKFVKFTAIGVYLEDDAVPLLAGKWKGKTAEELTESVEFFRDVV 87 (222)
Q Consensus 8 ~~~~v~gv~FP~~i~~~~~~~~L~L~GaGvR~k~i~~~~~kVYa~GlY~~~~~~~~l~~~~~g~~~~~l~~~~~~~~~li 87 (222)
+.++|+|++||+.++ +++++|.|+|+|+|.+.|.|++|||||+|+|+++++.++| .+|+|++++||.+|++||++|+
T Consensus 2 ~~~~v~~v~FP~~i~--~ss~~l~L~G~G~R~~~I~~~~iK~yAiGvYle~~~~~~L-~kwkgk~a~EL~~~~~Ff~dlv 78 (206)
T PLN02804 2 EMVMVEDIPFPPQIT--TSSKPLSLLGHGITDIEIHFLQIKFTAIGVYLEPSVKGHL-QSWKGKPGSELAEDDDFFQALI 78 (206)
T ss_pred ceEEecCcCCCceee--cCCCcceEEeecccceEEEeEEEEEEEEEEEecHHHHHHH-HHhcCCCHHHHhcCHHHHHHHH
Confidence 347899999999998 3668999999999999999999999999999999888888 6999999999999999999999
Q ss_pred cCCcceEEEEEEEecCChhhHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHhccCCCCCCCCEEEEEEeC--CceEEEE
Q 027531 88 TGPFEKFMKVTMILPLTGAQYSEKVAENCIAIWKFFGIYTDAEAKAIEKFTEVFKDEIFPPGSSILFTQSP--GSLTISF 165 (222)
Q Consensus 88 ~~~~~k~iriv~~r~v~~~~f~~al~e~l~~~~~~~g~~~~~~~~~L~~f~~~F~~~~l~kG~~i~l~~~p--g~l~v~~ 165 (222)
++|++|.+|++++|++++.+|+++++++|++|+++.|.++++|.++|++|.++|+++++|||+.|+|+|+| |.+.+++
T Consensus 79 ~~p~ek~~Ri~~i~~l~g~qy~~~~ee~~~~rlk~~~~y~d~e~~aL~kf~~~Fk~~~fp~Gs~I~ft~~~~~g~l~Isf 158 (206)
T PLN02804 79 QAPVEKLIRIVVIKEIKGSQYGVQLESSVRDRLAEDDKYEEEEEEALEKVVEFFQSKYFKKNSIITYHFPATSGIVEISF 158 (206)
T ss_pred cCChhhEEEEEEEecCcCccHHHHHHHHHHHHHhcCCCCcchHHHHHHHHHHHhCCCcCCCCCEEEEEecCCCCeEEEEE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999986 7899999
Q ss_pred eeCCCCCccceeeecCHHHHHHHHHHhc-CCCCCCHHHHHHHHHHHHHHH
Q 027531 166 SKDGSIPKDGVAVIESNLLSEAVLESMI-GKNGVSPAAKKSLAERISALL 214 (222)
Q Consensus 166 ~~~g~~~~~~~g~I~~~~~~~aL~~~yL-G~~Pvs~~lK~s~~~~l~~ll 214 (222)
+.+| |....++|+|+++|+|+|++|| |++||||++|+++|++|+++|
T Consensus 159 s~dg--~e~~~~~Ienk~l~~avl~~yi~G~~~VSp~~k~slA~~la~~~ 206 (206)
T PLN02804 159 STEG--KEESKLTVENANVVEMIQKWYLGGENGVSPSTISSVADSIAAEL 206 (206)
T ss_pred ecCC--cccceeEEecHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhhC
Confidence 9888 4556788999999999999999 999999999999999999885
No 3
>PLN02311 chalcone isomerase
Probab=100.00 E-value=2.6e-53 Score=370.12 Aligned_cols=199 Identities=25% Similarity=0.427 Sum_probs=187.2
Q ss_pred eeceecCCcccCCCCCCceeeeeeeeeeeeEcCeeEEEEEEEEeecCCCCchhhhcccCCChhhhhcchHHHHHhhcCCc
Q 027531 12 VENVTFTPSVQPPGSTKSHFLGGAGERGLEIEGKFVKFTAIGVYLEDDAVPLLAGKWKGKTAEELTESVEFFRDVVTGPF 91 (222)
Q Consensus 12 v~gv~FP~~i~~~~~~~~L~L~GaGvR~k~i~~~~~kVYa~GlY~~~~~~~~l~~~~~g~~~~~l~~~~~~~~~li~~~~ 91 (222)
.|||+||+.+++|+++++|+|||+|+|+|.|.|++|||||+|||+++++.++|+ +|+|++++||.+|.+||++|+++|+
T Consensus 72 ~TgV~Fp~~v~~~~~s~~L~LnGaGvR~K~I~~~~vKVYA~GLYL~~~~~~~L~-kwkgk~a~eL~~~~~ff~dIi~a~~ 150 (271)
T PLN02311 72 ATSVKFQRSLTLPGCSSPLSLLGTGYREKVFAIIGVKVYAAGLYVNPSILSGLS-AWKGRSADEIQRDSSLFSSIFQAPA 150 (271)
T ss_pred CcCCcCCccccCCCCCCceeEeeeEEeeEEEeeeeEEEEEEEEEechhhhhhHh-hhcCCCHHHHhcchHHHHHHhcCCc
Confidence 899999999999987799999999999999988999999999999999989997 9999999999999999999999999
Q ss_pred ceEEEEEEEecCChhhHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHhccCCCCCCCCEEEEEEeC-CceEEEEeeCCC
Q 027531 92 EKFMKVTMILPLTGAQYSEKVAENCIAIWKFFGIYTDAEAKAIEKFTEVFKDEIFPPGSSILFTQSP-GSLTISFSKDGS 170 (222)
Q Consensus 92 ~k~iriv~~r~v~~~~f~~al~e~l~~~~~~~g~~~~~~~~~L~~f~~~F~~~~l~kG~~i~l~~~p-g~l~v~~~~~g~ 170 (222)
+|++||+++|++++++|++||+|++++|+++. ++++.++|++|.++|++++++||++|+|+|.| |++++++..+|
T Consensus 151 eK~irI~~iR~v~g~~~~~A~~eg~~~rlk~~---~~~~~~aLekF~~~F~~~~l~kGd~I~~~~~p~~~~~v~~s~~g- 226 (271)
T PLN02311 151 EKSLQIVLVRDVDGKTFWDALDEAISPRIKAP---SPDDTSALSTFRSIFQNRSLNKGTVIFLTWINPSKMLVCISSEG- 226 (271)
T ss_pred ceEEEEEEEecCCHHHHHHHHHHHHHHHHhcc---ccchHHHHHHHHHHhcCCCCCCCCEEEEEEeCCCceEEEEecCC-
Confidence 99999999999999999999999999999764 45678899999999998899999999999999 68999887666
Q ss_pred CCccceeeecCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHHc
Q 027531 171 IPKDGVAVIESNLLSEAVLESMIGKNGVSPAAKKSLAERISALLN 215 (222)
Q Consensus 171 ~~~~~~g~I~~~~~~~aL~~~yLG~~Pvs~~lK~s~~~~l~~ll~ 215 (222)
.+++..|+|+++.||+|||++|||++||||+||+++++++++||+
T Consensus 227 ~~~~~~g~Ies~~f~~ALf~i~LGd~PVs~~lK~sla~~la~ll~ 271 (271)
T PLN02311 227 LPSSVDATIESGNVTSALFDVFFGDSPVSPSLKASVANGLATTLK 271 (271)
T ss_pred cccceeEEECCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHhhC
Confidence 466678999999999999999999999999999999999999985
No 4
>PF02431 Chalcone: Chalcone-flavanone isomerase; InterPro: IPR003466 Chalcone isomerase (5.5.1.6 from EC) also known as chalcone-flavanone isomerase, is a plant enzyme responsible for the isomerisation of chalcone to naringenin a key step in the biosynthesis of flavonoids. The Petunia hybrida (Petunia) genome contains two genes coding for very similar enzymes, ChiA and ChiB, but only the first seems to encode a functional chalcone isomerase. Chalcone isomerase has a core 2-layer alpha/beta structure consisting of beta(3)-alpha(2)-beta-alpha(2)-beta(3) []. This entry represents a subgroup of Chalcone isomerase.; GO: 0016872 intramolecular lyase activity, 0042398 cellular modified amino acid biosynthetic process; PDB: 1JX0_B 1JEP_A 1EYP_B 1JX1_B 1EYQ_B 1FM8_A 1FM7_A 4DOL_A 4DOI_A 4DOK_B ....
Probab=100.00 E-value=2.5e-49 Score=333.16 Aligned_cols=195 Identities=33% Similarity=0.562 Sum_probs=172.2
Q ss_pred cCCcccCCCCCCceeeeeeeeeeeeEcCeeEEEEEEEEeecCCCCchhhhcccCCChh-hhhcchHHHHHhhcCCcceEE
Q 027531 17 FTPSVQPPGSTKSHFLGGAGERGLEIEGKFVKFTAIGVYLEDDAVPLLAGKWKGKTAE-ELTESVEFFRDVVTGPFEKFM 95 (222)
Q Consensus 17 FP~~i~~~~~~~~L~L~GaGvR~k~i~~~~~kVYa~GlY~~~~~~~~l~~~~~g~~~~-~l~~~~~~~~~li~~~~~k~i 95 (222)
||.++++|..+++|+|+|+|||+|+|+ +||||++|||++++..+.+...|.++.+. ++.++++||++|++++++|++
T Consensus 1 FP~~i~~p~~~~~l~L~G~GvR~~~~~--~ikVYavG~Yv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~k~i 78 (199)
T PF02431_consen 1 FPKKITSPTSSEELSLLGAGVRTVSFL--NIKVYAVGLYVDDSDAKKLLKKWKGKSASDDLEKSEDFFDDLLDSPVEKAI 78 (199)
T ss_dssp EESEEE-TTTSSEEEEEEEEEEEEEET--EEEEEEEEEEEECCHHHHHHHHHTTT-HHHHHHT-HHHHHHHHHSSS-EEE
T ss_pred CCCcccCCCCCCCeEEEEEEEeeEEEE--EEEEEEEEEEEChhHhhhHHHhhhcccCcccccccHHHHHHHhcCCccEEE
Confidence 899999998889999999999999975 89999999999999888888899999987 999999999999999999999
Q ss_pred EEEEEecCChhhHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHhccCC-CCCCCCEEEEEEeC-CceEEEEeeCCCCCc
Q 027531 96 KVTMILPLTGAQYSEKVAENCIAIWKFFGIYTDAEAKAIEKFTEVFKDE-IFPPGSSILFTQSP-GSLTISFSKDGSIPK 173 (222)
Q Consensus 96 riv~~r~v~~~~f~~al~e~l~~~~~~~g~~~~~~~~~L~~f~~~F~~~-~l~kG~~i~l~~~p-g~l~v~~~~~g~~~~ 173 (222)
||+++|++++++|+++|.++|.+|++..+...++++++|++|+++|+.+ +++||++|+|+|.| |++.++|..+++.++
T Consensus 79 ri~~~R~~~~~~l~d~~~~~i~~r~~~~~~~~~~~~~~l~~f~~~F~~~g~~~kG~~i~l~~~~~g~l~v~~~~~~~~~~ 158 (199)
T PF02431_consen 79 RIVPVRNVDGKHLRDAFIESIRPRLKAAGTEEEALEEALDEFKSLFKSKGSVPKGDVITLTWSPDGSLTVSYNGQGKIPG 158 (199)
T ss_dssp EEEESSSEEHHHHHHHHHHHHHHHHHHTT--SHHHHHHHHHHHHHHTTB-EE-TT-EEEEEEETTTEEEEEEESSSS--S
T ss_pred EEEEEecCCHHHHHHHHHHHHHHHHhhcccccchHHHHHHHHHHHhcccccccCCCEEEEEECCCCcEEEEEecCCCCCc
Confidence 9999999999999999999999999887555678889999999999877 89999999999999 789999988887778
Q ss_pred cceeeecCHHHHHHHHHHhc-CCCCCCHHHHHHHHHHHHHH
Q 027531 174 DGVAVIESNLLSEAVLESMI-GKNGVSPAAKKSLAERISAL 213 (222)
Q Consensus 174 ~~~g~I~~~~~~~aL~~~yL-G~~Pvs~~lK~s~~~~l~~l 213 (222)
+..|+|++|.||+|||++|| |++|+||+||+++++||++|
T Consensus 159 ~~~g~I~~~~~~~al~~~yL~G~~pvs~~~k~s~~~~l~~l 199 (199)
T PF02431_consen 159 KELGTIKSPRFARALFDIYLSGDKPVSPSLKKSVAEGLASL 199 (199)
T ss_dssp SECEEEE-HHHHHHHHHHHH-STT-S-HHHHHHHHHHHHHH
T ss_pred cceeEEcCHHHHHHHHHHHcCCCCCCCHHHHHHHHHHhhcC
Confidence 89999999999999999999 99999999999999999986
No 5
>PLN03175 hypothetical protein; Provisional
Probab=100.00 E-value=2.5e-47 Score=344.55 Aligned_cols=198 Identities=20% Similarity=0.340 Sum_probs=181.3
Q ss_pred eeceecCCccc-CCCCCCceeeeeeeeeeeeEcC-eeEEEEEEEEeecCCC-CchhhhcccCCChhhhhcchHHHHHhhc
Q 027531 12 VENVTFTPSVQ-PPGSTKSHFLGGAGERGLEIEG-KFVKFTAIGVYLEDDA-VPLLAGKWKGKTAEELTESVEFFRDVVT 88 (222)
Q Consensus 12 v~gv~FP~~i~-~~~~~~~L~L~GaGvR~k~i~~-~~~kVYa~GlY~~~~~-~~~l~~~~~g~~~~~l~~~~~~~~~li~ 88 (222)
.||++||..++ .|++.+++.|+|+|+|.+.|.+ ++|||||+|+|+++.+ .++|+.+|+|++++||.++.+||++|++
T Consensus 212 kTgv~FP~~l~~~p~s~~sl~L~G~GvR~~eI~~~k~IKfyAiGVYle~~~v~~~L~~KwkGKsa~EL~~s~eFf~DIIt 291 (415)
T PLN03175 212 RTGIEFPMLLDENNSSLTSEVLVGTGSRTMKIIRIKSLKVYAFGFYVHPNSVCEKLGPKYASVPASELKKCPDFYEDLLR 291 (415)
T ss_pred CCCCcCCccccCCCCCCCceeeeecccceeEEEeeceeEEEEEEEEeccchHHHHHhhhhCCCcHHHHccCHHHHHHHHc
Confidence 78999999997 6666689999999999999985 7999999999999995 7789999999999999999999999999
Q ss_pred CCcceEEEEEEE-ecCChhhHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHhcc-CCCCCCCCEEEEEEeC-CceEEEE
Q 027531 89 GPFEKFMKVTMI-LPLTGAQYSEKVAENCIAIWKFFGIYTDAEAKAIEKFTEVFK-DEIFPPGSSILFTQSP-GSLTISF 165 (222)
Q Consensus 89 ~~~~k~iriv~~-r~v~~~~f~~al~e~l~~~~~~~g~~~~~~~~~L~~f~~~F~-~~~l~kG~~i~l~~~p-g~l~v~~ 165 (222)
+|++++|||+++ +.++..++.+|++|++.+|+++.+ ++++.++|++|.++|. +.++|||++|+|+|.| |++.+++
T Consensus 292 ap~~m~IRLVii~~gI~~sk~~~Afees~g~RLkkt~--gdae~eAIeKF~s~F~~di~fpkGssI~Ft~sP~ggLtisI 369 (415)
T PLN03175 292 EDIVMTVRLVVNYNGLKINTVRDAFEKSLRNRLQKMN--PNTDYNCLKTFGSFFTEDIPIPAGTKIDFRRTSDGQLITEI 369 (415)
T ss_pred CCccEEEEEEEecCCccHHHHHHHHHHHHHHHHhccC--CchHHHHHHHHHHHhhcccccCCCCEEEEEEcCCCceEEEE
Confidence 999999999997 568999999999999999999875 4667778999999995 5589999999999999 6788764
Q ss_pred eeCCCCCccceeeecCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHHccc
Q 027531 166 SKDGSIPKDGVAVIESNLLSEAVLESMIGKNGVSPAAKKSLAERISALLNVT 217 (222)
Q Consensus 166 ~~~g~~~~~~~g~I~~~~~~~aL~~~yLG~~Pvs~~lK~s~~~~l~~ll~~~ 217 (222)
|| +..|+|+++.||+|||++|||++||||+||++++++|++||++|
T Consensus 370 --nG----~~vgvIEnk~L~eALfdiyLGd~PVSPslKeslA~~La~Ll~~~ 415 (415)
T PLN03175 370 --GG----NQIGAVRSKDLCRAFFDMYIGDVPVSEQTKEEIGQNVAGIIRRC 415 (415)
T ss_pred --CC----eeeeEeccHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHHHHhcC
Confidence 44 57899999999999999999999999999999999999999876
No 6
>PLN03174 Chalcone-flavanone isomerase-related; Provisional
Probab=100.00 E-value=7.3e-45 Score=318.37 Aligned_cols=192 Identities=28% Similarity=0.432 Sum_probs=170.8
Q ss_pred eeceecCCcccCCCCCCceeeeeeeeeeeeEcCe-eEEEEEEEEeecCCCCch-hhhcccCCChhhhhcchHHHHHhhcC
Q 027531 12 VENVTFTPSVQPPGSTKSHFLGGAGERGLEIEGK-FVKFTAIGVYLEDDAVPL-LAGKWKGKTAEELTESVEFFRDVVTG 89 (222)
Q Consensus 12 v~gv~FP~~i~~~~~~~~L~L~GaGvR~k~i~~~-~~kVYa~GlY~~~~~~~~-l~~~~~g~~~~~l~~~~~~~~~li~~ 89 (222)
.|||+||++++.+ .+|+|+|+|.|.|+++ +||||++|||+++.+.+. |+.+|+|++++||.++.+||++|+++
T Consensus 82 ~tGv~FP~~l~~~-----~~LLGaGvR~k~i~glk~IKvYAiGlYl~~~~v~~~L~~k~kgks~~El~~s~~f~~dil~~ 156 (278)
T PLN03174 82 KTGVSFPAEIGDS-----RRLLGVGLRKKSILGLKNIDVYAFGVYADDDDLKKLLGEKYGKLSASELKGNKEFIDDLMEA 156 (278)
T ss_pred CCCCcCCCcccCC-----CcceeeeeeeEEEeccceEEEEEEEEEechhHhHHHhhhhhcCCChhhhhcCHHHHHHHHcC
Confidence 7899999999852 2377999999999774 799999999999986665 88899999999999999999999999
Q ss_pred CcceEEEEEEEec-CChhhHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHhccCC-CCCCCCEEEEEEeC-CceEEEEe
Q 027531 90 PFEKFMKVTMILP-LTGAQYSEKVAENCIAIWKFFGIYTDAEAKAIEKFTEVFKDE-IFPPGSSILFTQSP-GSLTISFS 166 (222)
Q Consensus 90 ~~~k~iriv~~r~-v~~~~f~~al~e~l~~~~~~~g~~~~~~~~~L~~f~~~F~~~-~l~kG~~i~l~~~p-g~l~v~~~ 166 (222)
|++|++||++++. ++.+++++|+.+++.+|++..+. +++.+.|++|.++|+++ .++||++|+|+|.| +++.+++
T Consensus 157 ~~ek~iRL~iiy~~v~~~~v~~A~~esv~~rl~~~~~--~e~~e~IekF~~~F~~~~~l~kGdvI~~~~~Pg~gl~vsi- 233 (278)
T PLN03174 157 DIKMTVRLQIVYGKLSIRSVRSAFEESVGSRLQKFGG--SDNKELLQSFTSLFKDEYKIPKGSVIDLSREPGHVLRTTI- 233 (278)
T ss_pred CCceEEEEEEEeccccHHHHHHHHHHHHHHhhhccCC--cchHHHHHHHHHHHhccccCCCCCEEEEEEcCCCeEEEEE-
Confidence 9999999999885 89999999999999999976532 34455799999999988 58999999999999 5677754
Q ss_pred eCCCCCccceeeecCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHHcc
Q 027531 167 KDGSIPKDGVAVIESNLLSEAVLESMIGKNGVSPAAKKSLAERISALLNV 216 (222)
Q Consensus 167 ~~g~~~~~~~g~I~~~~~~~aL~~~yLG~~Pvs~~lK~s~~~~l~~ll~~ 216 (222)
|| ++.|+|+++.||+|||++|||++||||+||++|+++|++||++
T Consensus 234 -~G----k~~g~Ie~~~f~~ALf~iyLGd~PVsp~lK~sll~~la~ll~~ 278 (278)
T PLN03174 234 -DG----KEVGSIQSKLLCRSILDLYIGEDPFDKNAKEDIEENLASLLQD 278 (278)
T ss_pred -CC----EEeeEECCHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHHHhcC
Confidence 55 5789999999999999999999999999999999999999963
No 7
>PF11720 Inhibitor_I78: Peptidase inhibitor I78 family; InterPro: IPR021719 This family includes Aspergillus elastase inhibitor and belongs to MEROPS peptidase inhibitor family I78.
Probab=50.55 E-value=9.1 Score=25.93 Aligned_cols=25 Identities=24% Similarity=0.643 Sum_probs=21.8
Q ss_pred CCCCCCEEEEEEeCCceEEEEeeCC
Q 027531 145 IFPPGSSILFTQSPGSLTISFSKDG 169 (222)
Q Consensus 145 ~l~kG~~i~l~~~pg~l~v~~~~~g 169 (222)
-+++|+.+++++.|.+|.|.+..+|
T Consensus 28 vi~Pg~~vTmDyr~dRLnv~~D~~g 52 (60)
T PF11720_consen 28 VIRPGDAVTMDYRPDRLNVEVDDDG 52 (60)
T ss_pred EeCCCCcCcccCCCCcEEEEECCCC
Confidence 5899999999999999999886544
No 8
>PF04036 DUF372: Domain of unknown function (DUF372); InterPro: IPR007179 This is a group of proteins of unknown function. It is found N-terminal to another domain of unknown function (IPR007181 from INTERPRO).; PDB: 2I52_B 2IEC_D 2OGF_C.
Probab=47.42 E-value=13 Score=23.15 Aligned_cols=25 Identities=32% Similarity=0.531 Sum_probs=19.9
Q ss_pred HHHHHHhcCCCCCCHHHHHHHHHHHH
Q 027531 186 EAVLESMIGKNGVSPAAKKSLAERIS 211 (222)
Q Consensus 186 ~aL~~~yLG~~Pvs~~lK~s~~~~l~ 211 (222)
-|||.+|.| -|||++.++++...++
T Consensus 12 GaLyHQF~G-tPvs~~~~~~le~aie 36 (38)
T PF04036_consen 12 GALYHQFVG-TPVSPETAESLEKAIE 36 (38)
T ss_dssp HHHHHHHTT--EESTTTHHHHHHHHH
T ss_pred HHHHHHhcC-CcCCcchHHHHHHHHh
Confidence 378999988 5999998888877665
No 9
>PF02541 Ppx-GppA: Ppx/GppA phosphatase family; InterPro: IPR003695 Exopolyphosphate phosphatase (Ppx) 3.6.1.11 from EC and guanosine pentaphosphate phosphatase (GppA) 3.6.1.40 from EC belong to the sugar kinase/actin/hsp70 superfamily [].; PDB: 3MDQ_A 1U6Z_A 1T6D_B 2J4R_B 1T6C_A 2FLO_B 3CER_B 3HI0_A.
Probab=43.28 E-value=2.2e+02 Score=24.66 Aligned_cols=124 Identities=14% Similarity=0.172 Sum_probs=66.4
Q ss_pred HHHhhcCCcceEEEEEEEecC----ChhhHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHhccCCCCCCCCEEEEEEeC
Q 027531 83 FRDVVTGPFEKFMKVTMILPL----TGAQYSEKVAENCIAIWKFFGIYTDAEAKAIEKFTEVFKDEIFPPGSSILFTQSP 158 (222)
Q Consensus 83 ~~~li~~~~~k~iriv~~r~v----~~~~f~~al~e~l~~~~~~~g~~~~~~~~~L~~f~~~F~~~~l~kG~~i~l~~~p 158 (222)
|..++..-....++.+-+.-+ ++..|.+.+.+..-=.+.- .+.+++. -=.|.++...- .+.++.+.++.=.
T Consensus 47 f~~~~~~~~v~~i~~vATsA~R~A~N~~~~~~~i~~~tGi~i~i---IsgeeEa-~l~~~gv~~~l-~~~~~~lviDIGG 121 (285)
T PF02541_consen 47 FKEILKDYGVEKIRAVATSALREAKNSDEFLDRIKKETGIDIEI---ISGEEEA-RLSFLGVLSSL-PPDKNGLVIDIGG 121 (285)
T ss_dssp HHHHHHHTTGSEEEEEEEHHHHHSTTHHHHHHHHHHHHSS-EEE---E-HHHHH-HHHHHHHHHHS-TTTSSEEEEEEES
T ss_pred HHHHHHHCCCCEEEEEhhHHHHhCcCHHHHHHHHHHHhCCceEE---ecHHHHH-HHHHHHHHhhc-cccCCEEEEEECC
Confidence 566776555566777754433 3334444443222100100 1333343 33334443332 3667788888767
Q ss_pred CceEEEEeeCCCCCccceeeecCHHHH-HHHHHHhcCCCCCCHHHHHHHHHHHHHHHcc
Q 027531 159 GSLTISFSKDGSIPKDGVAVIESNLLS-EAVLESMIGKNGVSPAAKKSLAERISALLNV 216 (222)
Q Consensus 159 g~l~v~~~~~g~~~~~~~g~I~~~~~~-~aL~~~yLG~~Pvs~~lK~s~~~~l~~ll~~ 216 (222)
|++.+++..+++ .....|-.+. -.|.+.|...+|.++.-.+.+-+-+...+.+
T Consensus 122 GStEl~~~~~~~-----~~~~~Sl~lG~vrl~e~~~~~~~~~~~~~~~~~~~i~~~l~~ 175 (285)
T PF02541_consen 122 GSTELILFENGK-----VVFSQSLPLGAVRLTERFFKSDPPTAEELEKLREFIRKELEE 175 (285)
T ss_dssp SEEEEEEEETTE-----EEEEEEES--HHHHHHHHSGCSS-HHHHHHHHHHHHHHHHCT
T ss_pred CceEEEEEECCe-----eeEeeeeehHHHHHHHHHhccCcchHHHHHHHHHHHHHHHHH
Confidence 889998877663 2222233332 3477888888888887777776666666543
No 10
>COG4075 Uncharacterized conserved protein, homolog of nitrogen regulatory protein PII [Function unknown]
Probab=38.68 E-value=95 Score=23.56 Aligned_cols=61 Identities=23% Similarity=0.302 Sum_probs=33.2
Q ss_pred EEEEeecCC--CCchhhhcccCCChhhhhcchHHHHHhhcCCcceEEEEEEEecCChhhHHHHHHHHHHHHH
Q 027531 51 AIGVYLEDD--AVPLLAGKWKGKTAEELTESVEFFRDVVTGPFEKFMKVTMILPLTGAQYSEKVAENCIAIW 120 (222)
Q Consensus 51 a~GlY~~~~--~~~~l~~~~~g~~~~~l~~~~~~~~~li~~~~~k~iriv~~r~v~~~~f~~al~e~l~~~~ 120 (222)
..|+|+..- .++ ++|+|++.+ +|++-.=.+++...++++-|.- +=.+.-.+.+.+.+..++
T Consensus 28 iTGFfl~eYrGvsP---d~wkgf~~~---EDpE~aik~i~D~s~~AVlI~t---VV~Ee~vekie~~~~Ekl 90 (110)
T COG4075 28 ITGFFLHEYRGVSP---DKWKGFSKE---EDPESAIKAIRDLSDKAVLIGT---VVKEEKVEKIEELLKEKL 90 (110)
T ss_pred cceEEEEEecCcCh---hHhcCcccc---cCHHHHHHHHHHhhhceEEEEE---ecCHHHHHHHHHHHHHHh
Confidence 357777765 233 589999876 3665433344444455555542 222444455555555554
No 11
>COG0248 GppA Exopolyphosphatase [Nucleotide transport and metabolism / Inorganic ion transport and metabolism]
Probab=30.34 E-value=2.5e+02 Score=27.19 Aligned_cols=123 Identities=15% Similarity=0.197 Sum_probs=71.7
Q ss_pred HHHHHhhcCCcceEEEEE---EEec-CChhhHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHhccCCCCC-CCCEEEEE
Q 027531 81 EFFRDVVTGPFEKFMKVT---MILP-LTGAQYSEKVAENCIAIWKFFGIYTDAEAKAIEKFTEVFKDEIFP-PGSSILFT 155 (222)
Q Consensus 81 ~~~~~li~~~~~k~iriv---~~r~-v~~~~f~~al~e~l~~~~~~~g~~~~~~~~~L~~f~~~F~~~~l~-kG~~i~l~ 155 (222)
..|..+++.-....+|+| ..|+ .++.+|.....+.+-=.+.- ...++++--.+.++... ++ +|+.+.++
T Consensus 62 ~~f~e~~~~~~~~~v~~vATsA~R~A~N~~eFl~rv~~~~G~~iev----IsGeeEArl~~lGv~~~--~~~~~~~lv~D 135 (492)
T COG0248 62 KRFAELLDGFGAEEVRVVATSALRDAPNGDEFLARVEKELGLPIEV----ISGEEEARLIYLGVAST--LPRKGDGLVID 135 (492)
T ss_pred HHHHHHHhhCCCCEEEEehhHHHHcCCCHHHHHHHHHHHhCCceEE----eccHHHHHHHHHHHHhc--CCCCCCEEEEE
Confidence 347788877666668888 3455 46777777665555222211 22345555555666553 34 88888888
Q ss_pred EeCCceEEEEeeCCCCCccceeeecCHHHHHHHHHHhcCCCCCCHH----HHHHHHHHHHHH
Q 027531 156 QSPGSLTISFSKDGSIPKDGVAVIESNLLSEAVLESMIGKNGVSPA----AKKSLAERISAL 213 (222)
Q Consensus 156 ~~pg~l~v~~~~~g~~~~~~~g~I~~~~~~~aL~~~yLG~~Pvs~~----lK~s~~~~l~~l 213 (222)
.=.|++.++...+.+ ....+.=|.=|=.|-..|++++|+++. +++.+.+.|+.+
T Consensus 136 IGGGStEl~~g~~~~----~~~~~Sl~~G~v~lt~~~~~~~~~s~~~~~~~~~~~~~~l~~~ 193 (492)
T COG0248 136 IGGGSTELVLGDNFE----IGLLISLPLGCVRLTERFFPDDPISEENFAKARDAVREELEEI 193 (492)
T ss_pred ecCCeEEEEEecCCc----cceeEEeecceEEeehhhcCCCCCCHHHHHHHHHHHHHHHHhh
Confidence 755788887654332 111122222234477889988899974 444444555443
No 12
>TIGR03161 ribazole_CobZ alpha-ribazole phosphatase CobZ. Sequences in the seed alignment were the experimentally characterized CobZ of the methanogenic archaeon Methanosarcina mazei, and other archaeal proteins found similarly next to or very near to other cobalamin biosynthesis genes. CobZ replaces the alpha-ribazole-phosphate phosphatase (EC 3.1.3.73) called CobC in analogous bacterial pathways for cobalamin biosynthesis under anaerobic conditions.
Probab=29.23 E-value=62 Score=25.98 Aligned_cols=40 Identities=23% Similarity=0.261 Sum_probs=34.6
Q ss_pred ecCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHHcccCC
Q 027531 179 IESNLLSEAVLESMIGKNGVSPAAKKSLAERISALLNVTSD 219 (222)
Q Consensus 179 I~~~~~~~aL~~~yLG~~Pvs~~lK~s~~~~l~~ll~~~~~ 219 (222)
|.-.++.+..+..|++.++.. .+++.|.+.+.+.|++.++
T Consensus 10 Vtl~dia~~~~~l~~q~~~~~-~~~e~~~~~v~~vL~kreV 49 (140)
T TIGR03161 10 ISLEGLVETAMELYVGKEPRE-EAEERLLRELERYLEDPNV 49 (140)
T ss_pred CCHHHHHHHHHHHhcCCcCch-HHHHHHHHHHHHHHcCHHH
Confidence 666789999999999987776 7799999999999998765
No 13
>PF02933 CDC48_2: Cell division protein 48 (CDC48), domain 2; InterPro: IPR004201 This domain has a double psi-beta barrel fold and includes VCP-like ATPase and N-ethylmaleimide sensitive fusion protein N-terminal domains. Both the VAT and NSF N-terminal functional domains consist of two structural domains of which this is at the C terminus. The VAT-N domain found in AAA ATPases (IPR003959 from INTERPRO) is a substrate 185-residue recognition domain [].; GO: 0005524 ATP binding; PDB: 1QDN_B 1QCS_A 1CR5_C 3QQ8_A 3HU2_A 3HU1_E 3HU3_A 3QWZ_A 3TIW_B 3QQ7_A ....
Probab=23.59 E-value=66 Score=21.58 Aligned_cols=32 Identities=16% Similarity=0.283 Sum_probs=23.2
Q ss_pred HHHHHHhccCCCCCCCCEEEEEEeCCceEEEE
Q 027531 134 IEKFTEVFKDEIFPPGSSILFTQSPGSLTISF 165 (222)
Q Consensus 134 L~~f~~~F~~~~l~kG~~i~l~~~pg~l~v~~ 165 (222)
++.|+..|.+..+.+|+.|.+......+.+.+
T Consensus 7 ~~~~~~~l~~~pv~~Gd~i~~~~~~~~~~~~V 38 (64)
T PF02933_consen 7 MAYFKRQLEGRPVTKGDTIVFPFFGQALPFKV 38 (64)
T ss_dssp HHHHHHHHTTEEEETT-EEEEEETTEEEEEEE
T ss_pred HHHHHHHHcCCCccCCCEEEEEeCCcEEEEEE
Confidence 34788889888999999999988654444433
No 14
>PF08040 NADH_oxidored: MNLL subunit; InterPro: IPR012575 NADH:ubiquinone oxidoreductase (complex I) (1.6.5.3 from EC) is a respiratory-chain enzyme that catalyses the transfer of two electrons from NADH to ubiquinone in a reaction that is associated with proton translocation across the membrane (NADH + ubiquinone = NAD+ + ubiquinol) []. Complex I is a major source of reactive oxygen species (ROS) that are predominantly formed by electron transfer from FMNH(2). Complex I is found in bacteria, cyanobacteria (as a NADH-plastoquinone oxidoreductase), archaea [], mitochondira, and in the hydrogenosome, a mitochondria-derived organelle. In general, the bacterial complex consists of 14 different subunits, while the mitochondrial complex contains homologues to these subunits in addition to approximately 31 additional proteins []. Mitochondrial complex I, which is located in the inner mitochondrial membrane, is the largest multimeric respiratory enzyme in the mitochondria, consisting of more than 40 subunits, one FMN co-factor and eight FeS clusters []. The assembly of mitochondrial complex I is an intricate process that requires the cooperation of the nuclear and mitochondrial genomes [, ]. Mitochondrial complex I can cycle between active and deactive forms that can be distinguished by the reactivity towards divalent cations and thiol-reactive agents. All redox prosthetic groups reside in the peripheral arm of the L-shaped structure. The NADH oxidation domain harbouring the FMN cofactor is connected via a chain of iron-sulphur clusters to the ubiquinone reduction site that is located in a large pocket formed by the PSST and 49kDa subunits of complex I []. This family consists of the MNLL subunits of NADH:ubiquinone oxidoreductase complex []. MNLL subunit is one of the many subunits found in the complex and it contains a mitochondrial import sequence. However, the role of MNLL subunit is unclear [].; GO: 0003954 NADH dehydrogenase activity, 0005739 mitochondrion
Probab=23.28 E-value=28 Score=23.79 Aligned_cols=24 Identities=29% Similarity=0.440 Sum_probs=18.8
Q ss_pred EEEEEEeecCCCCchhhhcccCCCh
Q 027531 49 FTAIGVYLEDDAVPLLAGKWKGKTA 73 (222)
Q Consensus 49 VYa~GlY~~~~~~~~l~~~~~g~~~ 73 (222)
.|++|-|+|.+....+ ..|++||+
T Consensus 20 gf~iG~yLDr~~~erl-T~FR~KSa 43 (59)
T PF08040_consen 20 GFVIGCYLDRKETERL-TAFRNKSA 43 (59)
T ss_pred HhhheeeecccchHHH-Hhhcchhh
Confidence 6799999999987766 36777663
No 15
>TIGR00789 flhB_rel flhB C-terminus-related protein. This model describes a short protein (80-93 residues) homologous to the C-terminus of the flagellar biosynthetic protein FlhB. It is found so far only in species that also have FlhB. In a phylogenetic tree based on alignment of both this family and the homologous region of FlhB and its homologs, the members of this family form a monophyletic set.
Probab=20.74 E-value=2.4e+02 Score=20.36 Aligned_cols=39 Identities=15% Similarity=0.261 Sum_probs=32.4
Q ss_pred eeeecCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHHc
Q 027531 176 VAVIESNLLSEAVLESMIGKNGVSPAAKKSLAERISALLN 215 (222)
Q Consensus 176 ~g~I~~~~~~~aL~~~yLG~~Pvs~~lK~s~~~~l~~ll~ 215 (222)
.-.++++.++++|+.+=+| +.+.+++=+.+++-|.-+..
T Consensus 41 VPi~~~~~LAr~L~~~~ig-~~IP~~ly~aVAeil~~v~~ 79 (82)
T TIGR00789 41 IPIVEDPDLVDVLLKLDLD-DEIPEELYEVVAEIFAFLYT 79 (82)
T ss_pred CCEEeCHHHHHHHHhCCCC-CccCHHHHHHHHHHHHHHHH
Confidence 3359999999999966656 88999999999998877654
Done!