BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 027534
(222 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1U4A|A Chain A, Solution Structure Of Human Sumo-3 C47s
Length = 87
Score = 48.5 bits (114), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 27/71 (38%), Positives = 39/71 (54%), Gaps = 1/71 (1%)
Query: 152 VSIQDKGGLKQFRVYADDKFERLFKMYADKVNLDQENLVFCFDGDKIGPEATPASLEMED 211
V+ QD G + QF++ +L K Y+++ L + F FDG I TPA LEMED
Sbjct: 8 VAGQD-GSVVQFKIKRHTPLSKLMKAYSERQGLSMRQIRFRFDGQPINETDTPAQLEMED 66
Query: 212 NDIIEVHTKKT 222
D I+V ++T
Sbjct: 67 EDTIDVFQQQT 77
>pdb|2K1F|A Chain A, Sumo-3 From Drosophila Melanogaster (Dsmt3)
Length = 88
Score = 48.5 bits (114), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 23/61 (37%), Positives = 33/61 (54%)
Query: 162 QFRVYADDKFERLFKMYADKVNLDQENLVFCFDGDKIGPEATPASLEMEDNDIIEVHTKK 221
QF++ +L Y D+ L + + F FDG I TP SLEME+ D IEV+ ++
Sbjct: 26 QFKIKKHTPLRKLMNAYCDRAGLSMQVVRFRFDGQPINENDTPTSLEMEEGDTIEVYQQQ 85
Query: 222 T 222
T
Sbjct: 86 T 86
>pdb|1WZ0|A Chain A, Solution Structure Of Human Sumo-2 (Smt3b), A Ubiquitin-
Like Protein
Length = 104
Score = 48.5 bits (114), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 32/96 (33%), Positives = 45/96 (46%), Gaps = 1/96 (1%)
Query: 127 SSMPAALEAESEKVSKPAIERAKIVVSIQDKGGLKQFRVYADDKFERLFKMYADKVNLDQ 186
S A E E V + + V+ QD G + QF++ +L K Y ++ L
Sbjct: 4 GSSGMADEKPKEGVKTENNDHINLKVAGQD-GSVVQFKIKRHTPLSKLMKAYCERQGLSM 62
Query: 187 ENLVFCFDGDKIGPEATPASLEMEDNDIIEVHTKKT 222
+ F FDG I TPA LEMED D I+V ++T
Sbjct: 63 RQIRFRFDGQPINETDTPAQLEMEDEDTIDVFQQQT 98
>pdb|2AWT|A Chain A, Solution Structure Of Human Small Ubiquitin-Like Modifier
Protein Isoform 2 (Sumo-2)
Length = 95
Score = 48.1 bits (113), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 31/91 (34%), Positives = 44/91 (48%), Gaps = 1/91 (1%)
Query: 132 ALEAESEKVSKPAIERAKIVVSIQDKGGLKQFRVYADDKFERLFKMYADKVNLDQENLVF 191
A E E V + + V+ QD G + QF++ +L K Y ++ L + F
Sbjct: 2 ADEKPKEGVKTENNDHINLKVAGQD-GSVVQFKIKRHTPLSKLMKAYCERQGLSMRQIRF 60
Query: 192 CFDGDKIGPEATPASLEMEDNDIIEVHTKKT 222
FDG I TPA LEMED D I+V ++T
Sbjct: 61 RFDGQPINETDTPAQLEMEDEDTIDVFQQQT 91
>pdb|2D07|B Chain B, Crystal Structure Of Sumo-3-Modified Thymine-Dna
Glycosylase
pdb|2RPQ|A Chain A, Solution Structure Of A Sumo-Interacting Motif Of Mbd1-
Containing Chromatin-Associated Factor 1 Bound To Sumo-3
Length = 93
Score = 48.1 bits (113), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 31/91 (34%), Positives = 44/91 (48%), Gaps = 1/91 (1%)
Query: 132 ALEAESEKVSKPAIERAKIVVSIQDKGGLKQFRVYADDKFERLFKMYADKVNLDQENLVF 191
A E E V + + V+ QD G + QF++ +L K Y ++ L + F
Sbjct: 2 ADEKPKEGVKTENNDHINLKVAGQD-GSVVQFKIKRHTPLSKLMKAYCERQGLSMRQIRF 60
Query: 192 CFDGDKIGPEATPASLEMEDNDIIEVHTKKT 222
FDG I TPA LEMED D I+V ++T
Sbjct: 61 RFDGQPINETDTPAQLEMEDEDTIDVFQQQT 91
>pdb|2IO3|B Chain B, Crystal Structure Of Human Senp2 In Complex With Rangap1-
Sumo-2
Length = 81
Score = 48.1 bits (113), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 28/79 (35%), Positives = 41/79 (51%), Gaps = 1/79 (1%)
Query: 144 AIERAKIVVSIQDKGGLKQFRVYADDKFERLFKMYADKVNLDQENLVFCFDGDKIGPEAT 203
A + + V+ QD G + QF++ +L K Y ++ L + F FDG I T
Sbjct: 2 ANDHINLKVAGQD-GSVVQFKIKRHTPLSKLMKAYCERQGLSMRQIRFRFDGQPINETDT 60
Query: 204 PASLEMEDNDIIEVHTKKT 222
PA LEMED D I+V ++T
Sbjct: 61 PAQLEMEDEDTIDVFQQQT 79
>pdb|2IO0|B Chain B, Crystal Structure Of Human Senp2 In Complex With Presumo-2
Length = 91
Score = 48.1 bits (113), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 28/79 (35%), Positives = 41/79 (51%), Gaps = 1/79 (1%)
Query: 144 AIERAKIVVSIQDKGGLKQFRVYADDKFERLFKMYADKVNLDQENLVFCFDGDKIGPEAT 203
A + + V+ QD G + QF++ +L K Y ++ L + F FDG I T
Sbjct: 2 ANDHINLKVAGQD-GSVVQFKIKRHTPLSKLMKAYCERQGLSMRQIRFRFDGQPINETDT 60
Query: 204 PASLEMEDNDIIEVHTKKT 222
PA LEMED D I+V ++T
Sbjct: 61 PAQLEMEDEDTIDVFQQQT 79
>pdb|2CKH|B Chain B, Senp1-sumo2 Complex
Length = 79
Score = 47.8 bits (112), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 27/71 (38%), Positives = 38/71 (53%), Gaps = 1/71 (1%)
Query: 152 VSIQDKGGLKQFRVYADDKFERLFKMYADKVNLDQENLVFCFDGDKIGPEATPASLEMED 211
V+ QD G + QF++ +L K Y ++ L + F FDG I TPA LEMED
Sbjct: 8 VAGQD-GSVVQFKIKRHTPLSKLMKAYCERQGLSMRQIRFRFDGQPINETDTPAQLEMED 66
Query: 212 NDIIEVHTKKT 222
D I+V ++T
Sbjct: 67 EDTIDVFQQQT 77
>pdb|2IO1|B Chain B, Crystal Structure Of Human Senp2 In Complex With Presumo-3
pdb|2IO1|D Chain D, Crystal Structure Of Human Senp2 In Complex With Presumo-3
pdb|2IO1|F Chain F, Crystal Structure Of Human Senp2 In Complex With Presumo-3
Length = 94
Score = 47.8 bits (112), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 27/71 (38%), Positives = 38/71 (53%), Gaps = 1/71 (1%)
Query: 152 VSIQDKGGLKQFRVYADDKFERLFKMYADKVNLDQENLVFCFDGDKIGPEATPASLEMED 211
V+ QD G + QF++ +L K Y ++ L + F FDG I TPA LEMED
Sbjct: 12 VAGQD-GSVVQFKIKRHTPLSKLMKAYCERQGLSMRQIRFRFDGQPINETDTPAQLEMED 70
Query: 212 NDIIEVHTKKT 222
D I+V ++T
Sbjct: 71 EDTIDVFQQQT 81
>pdb|2IYD|B Chain B, Senp1 Covalent Complex With Sumo-2
Length = 81
Score = 47.8 bits (112), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 27/71 (38%), Positives = 38/71 (53%), Gaps = 1/71 (1%)
Query: 152 VSIQDKGGLKQFRVYADDKFERLFKMYADKVNLDQENLVFCFDGDKIGPEATPASLEMED 211
V+ QD G + QF++ +L K Y ++ L + F FDG I TPA LEMED
Sbjct: 8 VAGQD-GSVVQFKIKRHTPLSKLMKAYCERQGLSMRQIRFRFDGQPINETDTPAQLEMED 66
Query: 212 NDIIEVHTKKT 222
D I+V ++T
Sbjct: 67 EDTIDVFQQQT 77
>pdb|3UIN|B Chain B, Complex Between Human Rangap1-Sumo2, Ubc9 And The Ir1
Domain From Ranbp2
pdb|3UIO|B Chain B, Complex Between Human Rangap1-Sumo2, Ubc9 And The Ir1
Domain From Ranbp2 Containing Ir2 Motif Ii
Length = 80
Score = 47.8 bits (112), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 27/71 (38%), Positives = 38/71 (53%), Gaps = 1/71 (1%)
Query: 152 VSIQDKGGLKQFRVYADDKFERLFKMYADKVNLDQENLVFCFDGDKIGPEATPASLEMED 211
V+ QD G + QF++ +L K Y ++ L + F FDG I TPA LEMED
Sbjct: 9 VAGQD-GSVVQFKIKRHTPLSKLMKAYCERQGLSMRQIRFRFDGQPINETDTPAQLEMED 67
Query: 212 NDIIEVHTKKT 222
D I+V ++T
Sbjct: 68 EDTIDVFQQQT 78
>pdb|3TIX|A Chain A, Crystal Structure Of The Chp1-Tas3 Complex Core
pdb|3TIX|C Chain C, Crystal Structure Of The Chp1-Tas3 Complex Core
Length = 207
Score = 47.0 bits (110), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 21/59 (35%), Positives = 35/59 (59%)
Query: 163 FRVYADDKFERLFKMYADKVNLDQENLVFCFDGDKIGPEATPASLEMEDNDIIEVHTKK 221
F++ RL + +A + + ++L F +DG +I + TP L+MEDNDIIE H ++
Sbjct: 71 FKIKKTTPLRRLMEAFAKRQGKEMDSLTFLYDGIEIQADQTPEDLDMEDNDIIEAHREQ 129
>pdb|2EKE|C Chain C, Structure Of A Sumo-Binding-Motif Mimic Bound To Smt3p-
Ubc9p: Conservation Of A Noncovalent Ubiquitin-Like
Protein-E2 Complex As A Platform For Selective
Interactions Within A Sumo Pathway
pdb|2EKE|D Chain D, Structure Of A Sumo-Binding-Motif Mimic Bound To Smt3p-
Ubc9p: Conservation Of A Noncovalent Ubiquitin-Like
Protein-E2 Complex As A Platform For Selective
Interactions Within A Sumo Pathway
Length = 106
Score = 46.6 bits (109), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 21/59 (35%), Positives = 35/59 (59%)
Query: 163 FRVYADDKFERLFKMYADKVNLDQENLVFCFDGDKIGPEATPASLEMEDNDIIEVHTKK 221
F++ RL + +A + + ++L F +DG +I + TP L+MEDNDIIE H ++
Sbjct: 45 FKIKKTTPLRRLMEAFAKRQGKEMDSLRFLYDGIRIQADQTPEDLDMEDNDIIEAHREQ 103
>pdb|3QHT|A Chain A, Crystal Structure Of The Monobody Ysmb-1 Bound To Yeast
Sumo
pdb|3QHT|B Chain B, Crystal Structure Of The Monobody Ysmb-1 Bound To Yeast
Sumo
Length = 98
Score = 46.6 bits (109), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 21/59 (35%), Positives = 35/59 (59%)
Query: 163 FRVYADDKFERLFKMYADKVNLDQENLVFCFDGDKIGPEATPASLEMEDNDIIEVHTKK 221
F++ RL + +A + + ++L F +DG +I + TP L+MEDNDIIE H ++
Sbjct: 37 FKIKKTTPLRRLMEAFAKRQGKEMDSLRFLYDGIRIQADQTPEDLDMEDNDIIEAHREQ 95
>pdb|1WM3|A Chain A, Crystal Structure Of Human Sumo-2 Protein
Length = 72
Score = 46.6 bits (109), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 26/66 (39%), Positives = 35/66 (53%), Gaps = 1/66 (1%)
Query: 152 VSIQDKGGLKQFRVYADDKFERLFKMYADKVNLDQENLVFCFDGDKIGPEATPASLEMED 211
V+ QD G + QF++ +L K Y ++ L + F FDG I TPA LEMED
Sbjct: 6 VAGQD-GSVVQFKIKRHTPLSKLMKAYCERQGLSMRQIRFRFDGQPINETDTPAQLEMED 64
Query: 212 NDIIEV 217
D I+V
Sbjct: 65 EDTIDV 70
>pdb|1L2N|A Chain A, Smt3 Solution Structure
Length = 101
Score = 46.6 bits (109), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 21/56 (37%), Positives = 33/56 (58%)
Query: 163 FRVYADDKFERLFKMYADKVNLDQENLVFCFDGDKIGPEATPASLEMEDNDIIEVH 218
F++ RL + +A + + ++L F +DG +I + TP L+MEDNDIIE H
Sbjct: 37 FKIKKTTPLRRLMEAFAKRQGKEMDSLRFLYDGIRIQADQTPEDLDMEDNDIIEAH 92
>pdb|1EUV|B Chain B, X-Ray Structure Of The C-Terminal Ulp1 Protease Domain In
Complex With Smt3, The Yeast Ortholog Of Sumo
Length = 86
Score = 46.2 bits (108), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 21/56 (37%), Positives = 33/56 (58%)
Query: 163 FRVYADDKFERLFKMYADKVNLDQENLVFCFDGDKIGPEATPASLEMEDNDIIEVH 218
F++ RL + +A + + ++L F +DG +I + TP L+MEDNDIIE H
Sbjct: 25 FKIKKTTPLRRLMEAFAKRQGKEMDSLRFLYDGIRIQADQTPEDLDMEDNDIIEAH 80
>pdb|3V7O|A Chain A, Crystal Structure Of The C-Terminal Domain Of Ebola Virus
Vp30 (Strain Reston-89)
pdb|3V7O|B Chain B, Crystal Structure Of The C-Terminal Domain Of Ebola Virus
Vp30 (Strain Reston-89)
Length = 227
Score = 46.2 bits (108), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 21/59 (35%), Positives = 35/59 (59%)
Query: 163 FRVYADDKFERLFKMYADKVNLDQENLVFCFDGDKIGPEATPASLEMEDNDIIEVHTKK 221
F++ RL + +A + + ++L F +DG +I + TP L+MEDNDIIE H ++
Sbjct: 35 FKIKKTTPLRRLMEAFAKRQGKEMDSLRFLYDGIRIQADQTPEDLDMEDNDIIEAHREQ 93
>pdb|1WM2|A Chain A, Crystal Structure Of Human Sumo-2 Protein
Length = 78
Score = 46.2 bits (108), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 26/66 (39%), Positives = 35/66 (53%), Gaps = 1/66 (1%)
Query: 152 VSIQDKGGLKQFRVYADDKFERLFKMYADKVNLDQENLVFCFDGDKIGPEATPASLEMED 211
V+ QD G + QF++ +L K Y ++ L + F FDG I TPA LEMED
Sbjct: 11 VAGQD-GSVVQFKIKRHTPLSKLMKAYCERQGLSMRQIRFRFDGQPINETDTPAQLEMED 69
Query: 212 NDIIEV 217
D I+V
Sbjct: 70 EDTIDV 75
>pdb|3UQB|A Chain A, Crystal Structure Of A Smt Fusion Peptidyl-Prolyl
Cis-Trans Isomerase With Surface Mutation D44g From
Burkholderia Pseudomallei Complexed With Fk506
pdb|4FN2|A Chain A, Crystal Structure Of A Smt Fusion Peptidyl-Prolyl
Cis-Trans Isomerase With Surface Mutation D44g From
Burkholderia Pseudomallei Complexed With Cj37
pdb|4FN2|B Chain B, Crystal Structure Of A Smt Fusion Peptidyl-Prolyl
Cis-Trans Isomerase With Surface Mutation D44g From
Burkholderia Pseudomallei Complexed With Cj37
pdb|4G50|A Chain A, Crystal Structure Of A Smt Fusion Peptidyl-Prolyl
Cis-Trans Isomerase With Surface Mutation D44g From
Burkholderia Pseudomallei Complexed With Cj168
pdb|4G50|B Chain B, Crystal Structure Of A Smt Fusion Peptidyl-Prolyl
Cis-Trans Isomerase With Surface Mutation D44g From
Burkholderia Pseudomallei Complexed With Cj168
pdb|4GIV|A Chain A, Crystal Structure Of A Smt Fusion Peptidyl-Prolyl
Cis-Trans Isomerase With Surface Mutation D44g From
Burkholderia Pseudomallei Complexed With Cj183
pdb|4GIV|B Chain B, Crystal Structure Of A Smt Fusion Peptidyl-Prolyl
Cis-Trans Isomerase With Surface Mutation D44g From
Burkholderia Pseudomallei Complexed With Cj183
Length = 209
Score = 46.2 bits (108), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 21/56 (37%), Positives = 33/56 (58%)
Query: 163 FRVYADDKFERLFKMYADKVNLDQENLVFCFDGDKIGPEATPASLEMEDNDIIEVH 218
F++ RL + +A + + ++L F +DG +I + TP L+MEDNDIIE H
Sbjct: 35 FKIKKTTPLRRLMEAFAKRQGKEMDSLRFLYDGIRIQADQTPEDLDMEDNDIIEAH 90
>pdb|3UF8|A Chain A, Crystal Structure Of A Smt Fusion Peptidyl-Prolyl
Cis-Trans Isomerase With A G95a Surface Mutation From
Burkholderia Pseudomallei Complexed With Fk506
Length = 209
Score = 46.2 bits (108), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 21/56 (37%), Positives = 33/56 (58%)
Query: 163 FRVYADDKFERLFKMYADKVNLDQENLVFCFDGDKIGPEATPASLEMEDNDIIEVH 218
F++ RL + +A + + ++L F +DG +I + TP L+MEDNDIIE H
Sbjct: 35 FKIKKTTPLRRLMEAFAKRQGKEMDSLRFLYDGIRIQADQTPEDLDMEDNDIIEAH 90
>pdb|3UQA|A Chain A, Crystal Structure Of A Smt Fusion Peptidyl-Prolyl
Cis-Trans Isomerase With Surface Mutation A54e From
Burkholderia Pseudomallei Complexed With Fk506
Length = 209
Score = 46.2 bits (108), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 21/56 (37%), Positives = 33/56 (58%)
Query: 163 FRVYADDKFERLFKMYADKVNLDQENLVFCFDGDKIGPEATPASLEMEDNDIIEVH 218
F++ RL + +A + + ++L F +DG +I + TP L+MEDNDIIE H
Sbjct: 35 FKIKKTTPLRRLMEAFAKRQGKEMDSLRFLYDGIRIQADQTPEDLDMEDNDIIEAH 90
>pdb|4GGQ|C Chain C, Crystal Structure Of A Smt Fusion Peptidyl-Prolyl
Cis-Trans Isomerase From Burkholderia Pseudomallei
Complexed With Cj40
pdb|4GGQ|A Chain A, Crystal Structure Of A Smt Fusion Peptidyl-Prolyl
Cis-Trans Isomerase From Burkholderia Pseudomallei
Complexed With Cj40
pdb|4GGQ|B Chain B, Crystal Structure Of A Smt Fusion Peptidyl-Prolyl
Cis-Trans Isomerase From Burkholderia Pseudomallei
Complexed With Cj40
pdb|4GGQ|D Chain D, Crystal Structure Of A Smt Fusion Peptidyl-Prolyl
Cis-Trans Isomerase From Burkholderia Pseudomallei
Complexed With Cj40
Length = 209
Score = 46.2 bits (108), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 21/56 (37%), Positives = 33/56 (58%)
Query: 163 FRVYADDKFERLFKMYADKVNLDQENLVFCFDGDKIGPEATPASLEMEDNDIIEVH 218
F++ RL + +A + + ++L F +DG +I + TP L+MEDNDIIE H
Sbjct: 35 FKIKKTTPLRRLMEAFAKRQGKEMDSLRFLYDGIRIQADQTPEDLDMEDNDIIEAH 90
>pdb|3VAW|A Chain A, Crystal Structure Of A Smt Fusion Peptidyl-Prolyl
Cis-Trans Isomerase With Surface Mutation V3i From
Burkholderia Pseudomallei Complexed With Fk506
Length = 209
Score = 46.2 bits (108), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 21/56 (37%), Positives = 33/56 (58%)
Query: 163 FRVYADDKFERLFKMYADKVNLDQENLVFCFDGDKIGPEATPASLEMEDNDIIEVH 218
F++ RL + +A + + ++L F +DG +I + TP L+MEDNDIIE H
Sbjct: 35 FKIKKTTPLRRLMEAFAKRQGKEMDSLRFLYDGIRIQADQTPEDLDMEDNDIIEAH 90
>pdb|3V62|A Chain A, Structure Of The S. Cerevisiae Srs2 C-Terminal Domain In
Complex With Pcna Conjugated To Sumo On Lysine 164
pdb|3V62|D Chain D, Structure Of The S. Cerevisiae Srs2 C-Terminal Domain In
Complex With Pcna Conjugated To Sumo On Lysine 164
Length = 84
Score = 45.8 bits (107), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 21/59 (35%), Positives = 34/59 (57%)
Query: 163 FRVYADDKFERLFKMYADKVNLDQENLVFCFDGDKIGPEATPASLEMEDNDIIEVHTKK 221
F + RL + +A + + ++L F +DG +I + TP L+MEDNDIIE H ++
Sbjct: 23 FXIXXTTPLRRLMEAFAXRQGXEMDSLRFLYDGIRIQADQTPEDLDMEDNDIIEAHREQ 81
>pdb|3V60|A Chain A, Structure Of S. Cerevisiae Pcna Conjugated To Sumo On
Lysine 164
pdb|3V61|A Chain A, Structure Of S. Cerevisiae Pcna Conjugated To Sumo On
Lysine 164
Length = 84
Score = 45.8 bits (107), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 21/59 (35%), Positives = 35/59 (59%)
Query: 163 FRVYADDKFERLFKMYADKVNLDQENLVFCFDGDKIGPEATPASLEMEDNDIIEVHTKK 221
F++ RL + +A + + ++L F +DG +I + TP L+MEDNDIIE H ++
Sbjct: 23 FKIKKTTPLRRLMEAFAKRQGKEMDSLRFLYDGIRIQADQTPEDLDMEDNDIIEAHREQ 81
>pdb|3PGE|A Chain A, Structure Of Sumoylated Pcna
Length = 200
Score = 45.8 bits (107), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 21/59 (35%), Positives = 35/59 (59%)
Query: 163 FRVYADDKFERLFKMYADKVNLDQENLVFCFDGDKIGPEATPASLEMEDNDIIEVHTKK 221
F++ RL + +A + + ++L F +DG +I + TP L+MEDNDIIE H ++
Sbjct: 43 FKIKKTTPLRRLMEAFAKRQGKEMDSLRFLYDGIRIQADQTPEDLDMEDNDIIEAHREQ 101
>pdb|3IX6|A Chain A, Crystal Structure Of Thymidylate Synthase Thya From
Brucella Melitensis
pdb|3IX6|B Chain B, Crystal Structure Of Thymidylate Synthase Thya From
Brucella Melitensis
Length = 360
Score = 45.1 bits (105), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 21/59 (35%), Positives = 35/59 (59%)
Query: 163 FRVYADDKFERLFKMYADKVNLDQENLVFCFDGDKIGPEATPASLEMEDNDIIEVHTKK 221
F++ RL + +A + + ++L F +DG +I + TP L+MEDNDIIE H ++
Sbjct: 35 FKIKKTTPLRRLMEAFAKRQGKEMDSLRFLYDGIRIQADQTPEDLDMEDNDIIEAHREQ 93
>pdb|4DA1|A Chain A, Crystal Structure Of Branched-Chain Alpha-Ketoacid
Dehydrogenase Phosphatase With Mg (Ii) Ions At The
Active Site
Length = 389
Score = 43.5 bits (101), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 20/56 (35%), Positives = 32/56 (57%)
Query: 163 FRVYADDKFERLFKMYADKVNLDQENLVFCFDGDKIGPEATPASLEMEDNDIIEVH 218
F++ RL + +A + + ++L F +DG +I + P L+MEDNDIIE H
Sbjct: 44 FKIKKTTPLRRLMEAFAKRQGKEMDSLRFLYDGIRIQADQAPEDLDMEDNDIIEAH 99
>pdb|3RZW|C Chain C, Crystal Structure Of The Monobody Ysmb-9 Bound To Human
Sumo1
pdb|3RZW|D Chain D, Crystal Structure Of The Monobody Ysmb-9 Bound To Human
Sumo1
Length = 99
Score = 42.7 bits (99), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 20/61 (32%), Positives = 34/61 (55%)
Query: 162 QFRVYADDKFERLFKMYADKVNLDQENLVFCFDGDKIGPEATPASLEMEDNDIIEVHTKK 221
F+V ++L + YA + + +L F F+G +I TP L ME+ D+IEV+ ++
Sbjct: 37 HFKVKMTTHLKKLKESYAQRQGVPMNSLRFLFEGQRIADNHTPKELGMEEEDVIEVYQEQ 96
Query: 222 T 222
T
Sbjct: 97 T 97
>pdb|2UYZ|B Chain B, Non-Covalent Complex Between Ubc9 And Sumo1
pdb|2VRR|B Chain B, Structure Of Sumo Modified Ubc9
Length = 79
Score = 40.8 bits (94), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 24/78 (30%), Positives = 41/78 (52%), Gaps = 1/78 (1%)
Query: 145 IERAKIVVSIQDKGGLKQFRVYADDKFERLFKMYADKVNLDQENLVFCFDGDKIGPEATP 204
+E K+ V QD + F+V ++L + Y + + +L F F+G +I TP
Sbjct: 1 MEYIKLKVIGQDSSEI-HFKVKMTTHLKKLKESYCQRQGVPMNSLRFLFEGQRIADNHTP 59
Query: 205 ASLEMEDNDIIEVHTKKT 222
L ME+ D+IEV+ ++T
Sbjct: 60 KELGMEEEDVIEVYQEQT 77
>pdb|2IY0|B Chain B, Senp1 (Mutant) Sumo1 Rangap
Length = 82
Score = 40.8 bits (94), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 19/61 (31%), Positives = 33/61 (54%)
Query: 162 QFRVYADDKFERLFKMYADKVNLDQENLVFCFDGDKIGPEATPASLEMEDNDIIEVHTKK 221
F+V ++L + Y + + +L F F+G +I TP L ME+ D+IEV+ ++
Sbjct: 16 HFKVKMTTHLKKLKESYCQRQGVPMNSLRFLFEGQRIADNHTPKELGMEEEDVIEVYQEQ 75
Query: 222 T 222
T
Sbjct: 76 T 76
>pdb|1A5R|A Chain A, Structure Determination Of The Small Ubiquitin-Related
Modifier Sumo-1, Nmr, 10 Structures
Length = 103
Score = 40.8 bits (94), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 19/61 (31%), Positives = 33/61 (54%)
Query: 162 QFRVYADDKFERLFKMYADKVNLDQENLVFCFDGDKIGPEATPASLEMEDNDIIEVHTKK 221
F+V ++L + Y + + +L F F+G +I TP L ME+ D+IEV+ ++
Sbjct: 37 HFKVKMTTHLKKLKESYCQRQGVPMNSLRFLFEGQRIADNHTPKELGMEEEDVIEVYQEQ 96
Query: 222 T 222
T
Sbjct: 97 T 97
>pdb|1Y8R|C Chain C, Sumo E1 Activating Enzyme Sae1-Sae2-Sumo1-Mg-Atp Complex
pdb|1Y8R|F Chain F, Sumo E1 Activating Enzyme Sae1-Sae2-Sumo1-Mg-Atp Complex
pdb|1WYW|B Chain B, Crystal Structure Of Sumo1-Conjugated Thymine Dna
Glycosylase
pdb|2PE6|B Chain B, Non-Covalent Complex Between Human Sumo-1 And Human Ubc9
pdb|2ASQ|A Chain A, Solution Structure Of Sumo-1 In Complex With A
Sumo-Binding Motif (Sbm)
Length = 97
Score = 40.8 bits (94), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 19/61 (31%), Positives = 33/61 (54%)
Query: 162 QFRVYADDKFERLFKMYADKVNLDQENLVFCFDGDKIGPEATPASLEMEDNDIIEVHTKK 221
F+V ++L + Y + + +L F F+G +I TP L ME+ D+IEV+ ++
Sbjct: 35 HFKVKMTTHLKKLKESYCQRQGVPMNSLRFLFEGQRIADNHTPKELGMEEEDVIEVYQEQ 94
Query: 222 T 222
T
Sbjct: 95 T 95
>pdb|2G4D|B Chain B, Crystal Structure Of Human Senp1 Mutant (C603s) In Complex
With Sumo-1
pdb|2G4D|D Chain D, Crystal Structure Of Human Senp1 Mutant (C603s) In Complex
With Sumo-1
pdb|2LAS|A Chain A, Molecular Determinants Of Paralogue-Specific Sumo-Sim
Recognition
Length = 78
Score = 40.4 bits (93), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 19/61 (31%), Positives = 33/61 (54%)
Query: 162 QFRVYADDKFERLFKMYADKVNLDQENLVFCFDGDKIGPEATPASLEMEDNDIIEVHTKK 221
F+V ++L + Y + + +L F F+G +I TP L ME+ D+IEV+ ++
Sbjct: 16 HFKVKMTTHLKKLKESYCQRQGVPMNSLRFLFEGQRIADNHTPKELGMEEEDVIEVYQEQ 75
Query: 222 T 222
T
Sbjct: 76 T 76
>pdb|2KQS|A Chain A, Phosphorylation Of Sumo-Interacting Motif By Ck2 Enhances
Daxx Sumo Binding Activity
Length = 99
Score = 40.4 bits (93), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 19/61 (31%), Positives = 33/61 (54%)
Query: 162 QFRVYADDKFERLFKMYADKVNLDQENLVFCFDGDKIGPEATPASLEMEDNDIIEVHTKK 221
F+V ++L + Y + + +L F F+G +I TP L ME+ D+IEV+ ++
Sbjct: 37 HFKVKMTTHLKKLKESYCQRQGVPMNSLRFLFEGQRIADNHTPKELGMEEEDVIEVYQEQ 96
Query: 222 T 222
T
Sbjct: 97 T 97
>pdb|2BF8|B Chain B, Crystal Structure Of Sumo Modified Ubiquitin Conjugating
Enzyme E2-25k
Length = 77
Score = 40.4 bits (93), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 19/61 (31%), Positives = 33/61 (54%)
Query: 162 QFRVYADDKFERLFKMYADKVNLDQENLVFCFDGDKIGPEATPASLEMEDNDIIEVHTKK 221
F+V ++L + Y + + +L F F+G +I TP L ME+ D+IEV+ ++
Sbjct: 15 HFKVKMTTHLKKLKESYCQRQGVPMNSLRFLFEGQRIADNHTPKELGMEEEDVIEVYQEQ 74
Query: 222 T 222
T
Sbjct: 75 T 75
>pdb|2IY1|B Chain B, Senp1 (Mutant) Full Length Sumo1
pdb|2IY1|D Chain D, Senp1 (Mutant) Full Length Sumo1
Length = 83
Score = 40.4 bits (93), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 19/61 (31%), Positives = 33/61 (54%)
Query: 162 QFRVYADDKFERLFKMYADKVNLDQENLVFCFDGDKIGPEATPASLEMEDNDIIEVHTKK 221
F+V ++L + Y + + +L F F+G +I TP L ME+ D+IEV+ ++
Sbjct: 16 HFKVKMTTHLKKLKESYCQRQGVPMNSLRFLFEGQRIADNHTPKELGMEEEDVIEVYQEQ 75
Query: 222 T 222
T
Sbjct: 76 T 76
>pdb|1Z5S|B Chain B, Crystal Structure Of A Complex Between Ubc9, Sumo-1,
Rangap1 And Nup358RANBP2
pdb|2IO2|B Chain B, Crystal Structure Of Human Senp2 In Complex With
Rangap1-sumo-1
Length = 82
Score = 40.4 bits (93), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 19/61 (31%), Positives = 33/61 (54%)
Query: 162 QFRVYADDKFERLFKMYADKVNLDQENLVFCFDGDKIGPEATPASLEMEDNDIIEVHTKK 221
F+V ++L + Y + + +L F F+G +I TP L ME+ D+IEV+ ++
Sbjct: 20 HFKVKMTTHLKKLKESYCQRQGVPMNSLRFLFEGQRIADNHTPKELGMEEEDVIEVYQEQ 79
Query: 222 T 222
T
Sbjct: 80 T 80
>pdb|1TGZ|B Chain B, Structure Of Human Senp2 In Complex With Sumo-1
pdb|3UIP|B Chain B, Complex Between Human Rangap1-Sumo1, Ubc9 And The Ir1
Domain From Ranbp2 Containing Ir2 Motif Ii
Length = 80
Score = 40.4 bits (93), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 19/61 (31%), Positives = 33/61 (54%)
Query: 162 QFRVYADDKFERLFKMYADKVNLDQENLVFCFDGDKIGPEATPASLEMEDNDIIEVHTKK 221
F+V ++L + Y + + +L F F+G +I TP L ME+ D+IEV+ ++
Sbjct: 18 HFKVKMTTHLKKLKESYCQRQGVPMNSLRFLFEGQRIADNHTPKELGMEEEDVIEVYQEQ 77
Query: 222 T 222
T
Sbjct: 78 T 78
>pdb|2JXX|A Chain A, Nmr Solution Structure Of Ubiquitin-Like Domain Of
Nfatc2ip. Northeast Structural Genomics Consortium
Target Hr5627
Length = 97
Score = 40.0 bits (92), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 19/50 (38%), Positives = 24/50 (48%)
Query: 168 DDKFERLFKMYADKVNLDQENLVFCFDGDKIGPEATPASLEMEDNDIIEV 217
D + L Y + + L L F FDG K+ PA L ME D+IEV
Sbjct: 46 DSPLKTLMSHYEEAMGLSGRKLSFFFDGTKLSGRELPADLGMESGDLIEV 95
>pdb|3RD2|A Chain A, Nip45 Sumo-Like Domain 2
Length = 82
Score = 39.7 bits (91), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 19/50 (38%), Positives = 24/50 (48%)
Query: 168 DDKFERLFKMYADKVNLDQENLVFCFDGDKIGPEATPASLEMEDNDIIEV 217
D + L Y + + L L F FDG K+ PA L ME D+IEV
Sbjct: 31 DSPLKTLMSHYEEAMGLSGRKLSFFFDGTKLSGRELPADLGMESGDLIEV 80
>pdb|2K8H|A Chain A, Solution Structure Of Sumo From Trypanosoma Brucei
Length = 110
Score = 39.7 bits (91), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 23/78 (29%), Positives = 40/78 (51%), Gaps = 1/78 (1%)
Query: 146 ERAKIVVSIQDKGGLKQF-RVYADDKFERLFKMYADKVNLDQENLVFCFDGDKIGPEATP 204
E A + V + + G + F R+ + ++L Y K + + ++ F FDG I TP
Sbjct: 23 ETALVAVKVVNADGAEMFFRIKSRTALKKLIDTYCKKQGISRNSVRFLFDGTPIDETKTP 82
Query: 205 ASLEMEDNDIIEVHTKKT 222
L MED+D+I+ ++T
Sbjct: 83 EELGMEDDDVIDAMVEQT 100
>pdb|3KYD|D Chain D, Human Sumo E1~sumo1-amp Tetrahedral Intermediate Mimic
Length = 115
Score = 38.9 bits (89), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 18/60 (30%), Positives = 32/60 (53%)
Query: 162 QFRVYADDKFERLFKMYADKVNLDQENLVFCFDGDKIGPEATPASLEMEDNDIIEVHTKK 221
F+V ++L + Y + + +L F F+G +I TP L ME+ D+IEV+ ++
Sbjct: 54 HFKVKMTTHLKKLKESYCQRQGVPMNSLRFLFEGQRIADNHTPKELGMEEEDVIEVYQEQ 113
>pdb|3KYC|D Chain D, Human Sumo E1 Complex With A Sumo1-Amp Mimic
Length = 97
Score = 38.5 bits (88), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 18/60 (30%), Positives = 32/60 (53%)
Query: 162 QFRVYADDKFERLFKMYADKVNLDQENLVFCFDGDKIGPEATPASLEMEDNDIIEVHTKK 221
F+V ++L + Y + + +L F F+G +I TP L ME+ D+IEV+ ++
Sbjct: 35 HFKVKMTTHLKKLKESYCQRQGVPMNSLRFLFEGQRIADNHTPKELGMEEEDVIEVYQEQ 94
>pdb|3A4R|A Chain A, The Crystal Structure Of Sumo-Like Domain 2 In Nip45
pdb|3A4R|B Chain B, The Crystal Structure Of Sumo-Like Domain 2 In Nip45
pdb|3A4S|C Chain C, The Crystal Structure Of The Sld2:ubc9 Complex
pdb|3A4S|D Chain D, The Crystal Structure Of The Sld2:ubc9 Complex
Length = 79
Score = 38.1 bits (87), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 18/50 (36%), Positives = 25/50 (50%)
Query: 168 DDKFERLFKMYADKVNLDQENLVFCFDGDKIGPEATPASLEMEDNDIIEV 217
D + L Y + + L L F FDG K+ + PA L +E D+IEV
Sbjct: 28 DSPLKVLMSHYEEAMGLSGHKLSFFFDGTKLSGKELPADLGLESGDLIEV 77
>pdb|1MD6|A Chain A, High Resolution Crystal Structure Of Murine Il-1f5 Reveals
Unique Loop Conformation For Specificity
Length = 154
Score = 29.3 bits (64), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 17/44 (38%), Positives = 27/44 (61%), Gaps = 2/44 (4%)
Query: 88 VEDSAIKELRLKKQELVSFAKSADDVIRAVEESV--KRKLDSSM 129
++DSA+K L L +L++ A+ VI+ E SV R LD+S+
Sbjct: 10 MKDSALKVLYLHNNQLLAGGLHAEKVIKGEEISVVPNRALDASL 53
>pdb|1W19|A Chain A, Lumazine Synthase From Mycobacterium Tuberculosis Bound To
3-(1,3,7-Trihydro-9-D-Ribityl-2,6,8-Purinetrione-7-Yl)
Propane 1-Phosphate
pdb|1W19|B Chain B, Lumazine Synthase From Mycobacterium Tuberculosis Bound To
3-(1,3,7-Trihydro-9-D-Ribityl-2,6,8-Purinetrione-7-Yl)
Propane 1-Phosphate
pdb|1W19|C Chain C, Lumazine Synthase From Mycobacterium Tuberculosis Bound To
3-(1,3,7-Trihydro-9-D-Ribityl-2,6,8-Purinetrione-7-Yl)
Propane 1-Phosphate
pdb|1W19|D Chain D, Lumazine Synthase From Mycobacterium Tuberculosis Bound To
3-(1,3,7-Trihydro-9-D-Ribityl-2,6,8-Purinetrione-7-Yl)
Propane 1-Phosphate
pdb|1W19|E Chain E, Lumazine Synthase From Mycobacterium Tuberculosis Bound To
3-(1,3,7-Trihydro-9-D-Ribityl-2,6,8-Purinetrione-7-Yl)
Propane 1-Phosphate
pdb|1W29|A Chain A, Lumazine Synthase From Mycobacterium Tuberculosis Bound To
3-(1,3,7-Trihydro-9-D-Ribityl-2,6,8-Purinetrione-7-Yl)
Butane 1-Phosphate
pdb|1W29|B Chain B, Lumazine Synthase From Mycobacterium Tuberculosis Bound To
3-(1,3,7-Trihydro-9-D-Ribityl-2,6,8-Purinetrione-7-Yl)
Butane 1-Phosphate
pdb|1W29|C Chain C, Lumazine Synthase From Mycobacterium Tuberculosis Bound To
3-(1,3,7-Trihydro-9-D-Ribityl-2,6,8-Purinetrione-7-Yl)
Butane 1-Phosphate
pdb|1W29|D Chain D, Lumazine Synthase From Mycobacterium Tuberculosis Bound To
3-(1,3,7-Trihydro-9-D-Ribityl-2,6,8-Purinetrione-7-Yl)
Butane 1-Phosphate
pdb|1W29|E Chain E, Lumazine Synthase From Mycobacterium Tuberculosis Bound To
3-(1,3,7-Trihydro-9-D-Ribityl-2,6,8-Purinetrione-7-Yl)
Butane 1-Phosphate
pdb|2C92|A Chain A, Lumazine Synthase From Mycobacterium Tuberculosis Bound To
3-(1,3,7-Trihydro-9-D-Ribityl-2,6,8-Purinetrione-7-Yl)
Pentane 1 Phosphate
pdb|2C92|B Chain B, Lumazine Synthase From Mycobacterium Tuberculosis Bound To
3-(1,3,7-Trihydro-9-D-Ribityl-2,6,8-Purinetrione-7-Yl)
Pentane 1 Phosphate
pdb|2C92|C Chain C, Lumazine Synthase From Mycobacterium Tuberculosis Bound To
3-(1,3,7-Trihydro-9-D-Ribityl-2,6,8-Purinetrione-7-Yl)
Pentane 1 Phosphate
pdb|2C92|D Chain D, Lumazine Synthase From Mycobacterium Tuberculosis Bound To
3-(1,3,7-Trihydro-9-D-Ribityl-2,6,8-Purinetrione-7-Yl)
Pentane 1 Phosphate
pdb|2C92|E Chain E, Lumazine Synthase From Mycobacterium Tuberculosis Bound To
3-(1,3,7-Trihydro-9-D-Ribityl-2,6,8-Purinetrione-7-Yl)
Pentane 1 Phosphate
pdb|2C94|A Chain A, Lumazine Synthase From Mycobacterium Tuberculosis Bound To
3-(1,3,7-Trihydro-9-D-Ribityl-2,6,8-Purinetrione-7-Yl)
1,1 Difluoropentane-1-Phosphate
pdb|2C94|B Chain B, Lumazine Synthase From Mycobacterium Tuberculosis Bound To
3-(1,3,7-Trihydro-9-D-Ribityl-2,6,8-Purinetrione-7-Yl)
1,1 Difluoropentane-1-Phosphate
pdb|2C94|C Chain C, Lumazine Synthase From Mycobacterium Tuberculosis Bound To
3-(1,3,7-Trihydro-9-D-Ribityl-2,6,8-Purinetrione-7-Yl)
1,1 Difluoropentane-1-Phosphate
pdb|2C94|D Chain D, Lumazine Synthase From Mycobacterium Tuberculosis Bound To
3-(1,3,7-Trihydro-9-D-Ribityl-2,6,8-Purinetrione-7-Yl)
1,1 Difluoropentane-1-Phosphate
pdb|2C94|E Chain E, Lumazine Synthase From Mycobacterium Tuberculosis Bound To
3-(1,3,7-Trihydro-9-D-Ribityl-2,6,8-Purinetrione-7-Yl)
1,1 Difluoropentane-1-Phosphate
pdb|2C97|A Chain A, Lumazine Synthase From Mycobacterium Tuberculosis Bound To
4-(6-Chloro-2,4-Dioxo-1,2,3,4-Tetrahydropyrimidin-5-Yl)
Butyl Phosphate
pdb|2C97|B Chain B, Lumazine Synthase From Mycobacterium Tuberculosis Bound To
4-(6-Chloro-2,4-Dioxo-1,2,3,4-Tetrahydropyrimidin-5-Yl)
Butyl Phosphate
pdb|2C97|C Chain C, Lumazine Synthase From Mycobacterium Tuberculosis Bound To
4-(6-Chloro-2,4-Dioxo-1,2,3,4-Tetrahydropyrimidin-5-Yl)
Butyl Phosphate
pdb|2C97|D Chain D, Lumazine Synthase From Mycobacterium Tuberculosis Bound To
4-(6-Chloro-2,4-Dioxo-1,2,3,4-Tetrahydropyrimidin-5-Yl)
Butyl Phosphate
pdb|2C97|E Chain E, Lumazine Synthase From Mycobacterium Tuberculosis Bound To
4-(6-Chloro-2,4-Dioxo-1,2,3,4-Tetrahydropyrimidin-5-Yl)
Butyl Phosphate
pdb|2C9B|A Chain A, Lumazine Synthase From Mycobacterium Tuberculosis Bound To
3-(1,3,7-Trihydro-9-D-Ribityl-2,6,8-Purinetrione-7-Yl)
pdb|2C9B|B Chain B, Lumazine Synthase From Mycobacterium Tuberculosis Bound To
3-(1,3,7-Trihydro-9-D-Ribityl-2,6,8-Purinetrione-7-Yl)
pdb|2C9B|C Chain C, Lumazine Synthase From Mycobacterium Tuberculosis Bound To
3-(1,3,7-Trihydro-9-D-Ribityl-2,6,8-Purinetrione-7-Yl)
pdb|2C9B|D Chain D, Lumazine Synthase From Mycobacterium Tuberculosis Bound To
3-(1,3,7-Trihydro-9-D-Ribityl-2,6,8-Purinetrione-7-Yl)
pdb|2C9B|E Chain E, Lumazine Synthase From Mycobacterium Tuberculosis Bound To
3-(1,3,7-Trihydro-9-D-Ribityl-2,6,8-Purinetrione-7-Yl)
pdb|2C9B|F Chain F, Lumazine Synthase From Mycobacterium Tuberculosis Bound To
3-(1,3,7-Trihydro-9-D-Ribityl-2,6,8-Purinetrione-7-Yl)
pdb|2C9B|G Chain G, Lumazine Synthase From Mycobacterium Tuberculosis Bound To
3-(1,3,7-Trihydro-9-D-Ribityl-2,6,8-Purinetrione-7-Yl)
pdb|2C9B|H Chain H, Lumazine Synthase From Mycobacterium Tuberculosis Bound To
3-(1,3,7-Trihydro-9-D-Ribityl-2,6,8-Purinetrione-7-Yl)
pdb|2C9B|I Chain I, Lumazine Synthase From Mycobacterium Tuberculosis Bound To
3-(1,3,7-Trihydro-9-D-Ribityl-2,6,8-Purinetrione-7-Yl)
pdb|2C9B|J Chain J, Lumazine Synthase From Mycobacterium Tuberculosis Bound To
3-(1,3,7-Trihydro-9-D-Ribityl-2,6,8-Purinetrione-7-Yl)
pdb|2C9D|A Chain A, Lumazine Synthase From Mycobacterium Tuberculosis Bound To
3-(1,3,7-Trihydro-9-D-Ribityl-2,6,8-Purinetrione-7-Yl)
Hexane 1-Phosphate
pdb|2C9D|B Chain B, Lumazine Synthase From Mycobacterium Tuberculosis Bound To
3-(1,3,7-Trihydro-9-D-Ribityl-2,6,8-Purinetrione-7-Yl)
Hexane 1-Phosphate
pdb|2C9D|C Chain C, Lumazine Synthase From Mycobacterium Tuberculosis Bound To
3-(1,3,7-Trihydro-9-D-Ribityl-2,6,8-Purinetrione-7-Yl)
Hexane 1-Phosphate
pdb|2C9D|D Chain D, Lumazine Synthase From Mycobacterium Tuberculosis Bound To
3-(1,3,7-Trihydro-9-D-Ribityl-2,6,8-Purinetrione-7-Yl)
Hexane 1-Phosphate
pdb|2C9D|E Chain E, Lumazine Synthase From Mycobacterium Tuberculosis Bound To
3-(1,3,7-Trihydro-9-D-Ribityl-2,6,8-Purinetrione-7-Yl)
Hexane 1-Phosphate
pdb|2C9D|F Chain F, Lumazine Synthase From Mycobacterium Tuberculosis Bound To
3-(1,3,7-Trihydro-9-D-Ribityl-2,6,8-Purinetrione-7-Yl)
Hexane 1-Phosphate
pdb|2C9D|G Chain G, Lumazine Synthase From Mycobacterium Tuberculosis Bound To
3-(1,3,7-Trihydro-9-D-Ribityl-2,6,8-Purinetrione-7-Yl)
Hexane 1-Phosphate
pdb|2C9D|H Chain H, Lumazine Synthase From Mycobacterium Tuberculosis Bound To
3-(1,3,7-Trihydro-9-D-Ribityl-2,6,8-Purinetrione-7-Yl)
Hexane 1-Phosphate
pdb|2C9D|I Chain I, Lumazine Synthase From Mycobacterium Tuberculosis Bound To
3-(1,3,7-Trihydro-9-D-Ribityl-2,6,8-Purinetrione-7-Yl)
Hexane 1-Phosphate
pdb|2C9D|J Chain J, Lumazine Synthase From Mycobacterium Tuberculosis Bound To
3-(1,3,7-Trihydro-9-D-Ribityl-2,6,8-Purinetrione-7-Yl)
Hexane 1-Phosphate
pdb|2VI5|A Chain A, Lumazine Synthase From Mycobacterium Tuberculosis Bound To
N-6-(Ribitylamino)pyrimidine-2,4(1h,3h)-Dione-5-Yl-
Propionamide
pdb|2VI5|B Chain B, Lumazine Synthase From Mycobacterium Tuberculosis Bound To
N-6-(Ribitylamino)pyrimidine-2,4(1h,3h)-Dione-5-Yl-
Propionamide
pdb|2VI5|C Chain C, Lumazine Synthase From Mycobacterium Tuberculosis Bound To
N-6-(Ribitylamino)pyrimidine-2,4(1h,3h)-Dione-5-Yl-
Propionamide
pdb|2VI5|D Chain D, Lumazine Synthase From Mycobacterium Tuberculosis Bound To
N-6-(Ribitylamino)pyrimidine-2,4(1h,3h)-Dione-5-Yl-
Propionamide
pdb|2VI5|E Chain E, Lumazine Synthase From Mycobacterium Tuberculosis Bound To
N-6-(Ribitylamino)pyrimidine-2,4(1h,3h)-Dione-5-Yl-
Propionamide
pdb|2VI5|F Chain F, Lumazine Synthase From Mycobacterium Tuberculosis Bound To
N-6-(Ribitylamino)pyrimidine-2,4(1h,3h)-Dione-5-Yl-
Propionamide
pdb|2VI5|G Chain G, Lumazine Synthase From Mycobacterium Tuberculosis Bound To
N-6-(Ribitylamino)pyrimidine-2,4(1h,3h)-Dione-5-Yl-
Propionamide
pdb|2VI5|H Chain H, Lumazine Synthase From Mycobacterium Tuberculosis Bound To
N-6-(Ribitylamino)pyrimidine-2,4(1h,3h)-Dione-5-Yl-
Propionamide
pdb|2VI5|I Chain I, Lumazine Synthase From Mycobacterium Tuberculosis Bound To
N-6-(Ribitylamino)pyrimidine-2,4(1h,3h)-Dione-5-Yl-
Propionamide
pdb|2VI5|J Chain J, Lumazine Synthase From Mycobacterium Tuberculosis Bound To
N-6-(Ribitylamino)pyrimidine-2,4(1h,3h)-Dione-5-Yl-
Propionamide
Length = 160
Score = 27.7 bits (60), Expect = 5.8, Method: Compositional matrix adjust.
Identities = 18/49 (36%), Positives = 26/49 (53%), Gaps = 1/49 (2%)
Query: 111 DDVIRAVEESVKR-KLDSSMPAALEAESEKVSKPAIERAKIVVSIQDKG 158
D V AV + + R LDSS P A + + A++RA + S +DKG
Sbjct: 91 DYVCDAVTQGLTRVSLDSSTPIANGVLTTNTEEQALDRAGLPTSAEDKG 139
>pdb|3UIU|A Chain A, Crystal Structure Of Apo-Pkr Kinase Domain
pdb|3UIU|B Chain B, Crystal Structure Of Apo-Pkr Kinase Domain
Length = 306
Score = 27.3 bits (59), Expect = 6.7, Method: Compositional matrix adjust.
Identities = 20/51 (39%), Positives = 25/51 (49%), Gaps = 6/51 (11%)
Query: 166 YADDKFERLFKMYADKVNLDQENLVF---CFDGDKIGPEATPASLEMEDND 213
Y ++K ER K A LD N+V C+DG PE + SLE D D
Sbjct: 47 YNNEKAEREVKALA---KLDHVNIVHYNGCWDGFDYDPETSDDSLESSDYD 94
>pdb|4F4C|A Chain A, The Crystal Structure Of The Multi-Drug Transporter
Length = 1321
Score = 26.9 bits (58), Expect = 8.5, Method: Composition-based stats.
Identities = 14/37 (37%), Positives = 23/37 (62%)
Query: 113 VIRAVEESVKRKLDSSMPAALEAESEKVSKPAIERAK 149
+ RA+ + K L +AL+ ESEKV + A++RA+
Sbjct: 1228 IARALVRNPKILLLDEATSALDTESEKVVQEALDRAR 1264
>pdb|1L9U|D Chain D, Thermus Aquaticus Rna Polymerase Holoenzyme At 4 A
Resolution
pdb|1L9U|M Chain M, Thermus Aquaticus Rna Polymerase Holoenzyme At 4 A
Resolution
pdb|1L9Z|D Chain D, Thermus Aquaticus Rna Polymerase HoloenzymeFORK-Junction
Promoter Dna Complex At 6.5 A Resolution
pdb|1YNJ|D Chain D, Taq Rna Polymerase-Sorangicin Complex
pdb|1YNJ|J Chain J, Taq Rna Polymerase-Sorangicin Complex
pdb|1YNN|D Chain D, Taq Rna Polymerase-rifampicin Complex
pdb|1YNN|J Chain J, Taq Rna Polymerase-rifampicin Complex
Length = 1524
Score = 26.9 bits (58), Expect = 8.8, Method: Compositional matrix adjust.
Identities = 14/39 (35%), Positives = 21/39 (53%)
Query: 84 QKQLVEDSAIKELRLKKQELVSFAKSADDVIRAVEESVK 122
++QL+ D +ELR KQE D +++ EE VK
Sbjct: 149 KRQLLTDEEYRELRYGKQETYPLPAGVDALVKDGEEVVK 187
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.316 0.135 0.385
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 6,274,655
Number of Sequences: 62578
Number of extensions: 239650
Number of successful extensions: 820
Number of sequences better than 100.0: 74
Number of HSP's better than 100.0 without gapping: 64
Number of HSP's successfully gapped in prelim test: 10
Number of HSP's that attempted gapping in prelim test: 755
Number of HSP's gapped (non-prelim): 74
length of query: 222
length of database: 14,973,337
effective HSP length: 95
effective length of query: 127
effective length of database: 9,028,427
effective search space: 1146610229
effective search space used: 1146610229
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 49 (23.5 bits)