Query 027536
Match_columns 222
No_of_seqs 259 out of 1792
Neff 6.9
Searched_HMMs 46136
Date Fri Mar 29 11:24:31 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/027536.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/027536hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 TIGR03404 bicupin_oxalic bicup 100.0 1.4E-27 2.9E-32 217.5 19.1 159 51-219 204-362 (367)
2 PLN00212 glutelin; Provisional 99.9 1E-26 2.2E-31 217.2 18.2 145 70-220 322-469 (493)
3 PF00190 Cupin_1: Cupin; Inte 99.9 2.4E-24 5.1E-29 172.0 12.7 132 68-214 5-144 (144)
4 TIGR03404 bicupin_oxalic bicup 99.9 4.2E-23 9.2E-28 188.0 18.0 135 76-219 48-185 (367)
5 smart00835 Cupin_1 Cupin. This 99.9 9.8E-21 2.1E-25 151.4 17.5 134 75-213 8-145 (146)
6 PLN00212 glutelin; Provisional 99.8 8.3E-20 1.8E-24 171.0 20.2 139 75-219 59-249 (493)
7 COG2140 Thermophilic glucose-6 99.8 1.5E-18 3.4E-23 145.3 12.6 150 57-220 49-200 (209)
8 PF07883 Cupin_2: Cupin domain 99.5 1.4E-13 3.1E-18 95.8 8.0 70 101-176 2-71 (71)
9 COG1917 Uncharacterized conser 99.4 2.6E-12 5.6E-17 100.7 11.7 85 88-178 34-118 (131)
10 COG0662 {ManC} Mannose-6-phosp 99.4 5.4E-12 1.2E-16 98.9 12.1 82 95-182 34-115 (127)
11 PRK04190 glucose-6-phosphate i 99.3 2.3E-11 5E-16 101.9 13.5 89 90-179 61-157 (191)
12 PRK13290 ectC L-ectoine syntha 99.3 1.9E-11 4.1E-16 95.9 11.8 81 95-183 33-114 (125)
13 COG3837 Uncharacterized conser 99.1 3.4E-10 7.3E-15 91.0 9.8 84 88-179 35-121 (161)
14 TIGR01479 GMP_PMI mannose-1-ph 99.1 5E-10 1.1E-14 105.4 12.7 77 96-178 375-451 (468)
15 PRK11171 hypothetical protein; 99.1 1.7E-09 3.8E-14 94.8 15.3 107 53-176 28-135 (266)
16 PRK09943 DNA-binding transcrip 99.1 8.8E-10 1.9E-14 91.3 12.0 75 96-177 106-181 (185)
17 COG4101 Predicted mannose-6-ph 99.1 6.1E-10 1.3E-14 85.7 9.8 85 96-183 45-129 (142)
18 PRK15460 cpsB mannose-1-phosph 99.1 7.2E-10 1.6E-14 104.5 11.9 76 96-177 384-459 (478)
19 PF01050 MannoseP_isomer: Mann 99.1 1.9E-09 4.2E-14 87.1 11.1 75 96-176 62-136 (151)
20 TIGR03214 ura-cupin putative a 99.0 2.7E-09 5.8E-14 93.4 11.1 72 96-174 178-250 (260)
21 PRK11171 hypothetical protein; 98.9 1.2E-08 2.7E-13 89.5 11.3 74 96-176 183-257 (266)
22 TIGR03214 ura-cupin putative a 98.9 1.7E-08 3.8E-13 88.3 12.1 76 96-177 57-133 (260)
23 PF02041 Auxin_BP: Auxin bindi 98.8 4.6E-08 1E-12 78.2 9.9 107 79-190 29-139 (167)
24 PF06560 GPI: Glucose-6-phosph 98.7 1.7E-07 3.8E-12 77.8 11.9 86 92-178 45-146 (182)
25 PRK13264 3-hydroxyanthranilate 98.7 8.6E-08 1.9E-12 79.1 9.4 69 102-175 39-107 (177)
26 TIGR03037 anthran_nbaC 3-hydro 98.7 2.1E-07 4.6E-12 75.6 9.7 67 105-176 36-102 (159)
27 PF11699 CENP-C_C: Mif2/CENP-C 98.5 9.9E-07 2.2E-11 64.7 9.5 72 96-173 11-82 (85)
28 PF02311 AraC_binding: AraC-li 98.5 4.6E-07 1E-11 68.9 8.0 65 106-177 12-76 (136)
29 PF12973 Cupin_7: ChrR Cupin-l 98.4 4.3E-07 9.4E-12 66.9 5.6 81 77-174 8-88 (91)
30 PRK10371 DNA-binding transcrip 98.4 1.7E-06 3.8E-11 76.9 9.2 61 99-165 28-88 (302)
31 PF03079 ARD: ARD/ARD' family; 98.4 3.2E-06 6.8E-11 68.9 9.9 67 109-177 84-150 (157)
32 TIGR02451 anti_sig_ChrR anti-s 98.3 2.2E-06 4.7E-11 73.1 7.5 72 97-179 127-198 (215)
33 PRK15457 ethanolamine utilizat 98.3 1.3E-05 2.8E-10 68.7 11.8 70 96-176 156-225 (233)
34 COG4297 Uncharacterized protei 98.3 2.5E-06 5.4E-11 67.4 6.9 68 106-177 51-119 (163)
35 COG1791 Uncharacterized conser 98.2 1.7E-05 3.7E-10 64.8 9.8 71 111-184 89-159 (181)
36 PRK10296 DNA-binding transcrip 98.2 1.7E-05 3.6E-10 69.1 10.3 52 107-164 33-84 (278)
37 TIGR02272 gentisate_1_2 gentis 98.1 1.6E-05 3.5E-10 72.0 9.4 75 96-176 80-154 (335)
38 PRK13501 transcriptional activ 98.1 1.1E-05 2.4E-10 70.8 8.2 54 106-165 27-80 (290)
39 PF06339 Ectoine_synth: Ectoin 98.0 6.6E-05 1.4E-09 58.5 10.3 84 93-183 31-114 (126)
40 PRK13500 transcriptional activ 98.0 2.4E-05 5.2E-10 69.7 9.0 54 106-165 57-110 (312)
41 TIGR02297 HpaA 4-hydroxyphenyl 98.0 1.8E-05 3.9E-10 68.9 7.8 54 107-165 33-86 (287)
42 PF05523 FdtA: WxcM-like, C-te 97.9 0.00019 4.1E-09 56.6 11.1 96 78-179 15-112 (131)
43 PF14499 DUF4437: Domain of un 97.9 1.7E-05 3.7E-10 69.1 5.3 71 96-172 35-105 (251)
44 PRK13503 transcriptional activ 97.9 4.4E-05 9.6E-10 66.1 7.8 53 106-164 24-76 (278)
45 PRK13502 transcriptional activ 97.9 5.9E-05 1.3E-09 65.7 8.6 55 105-165 26-80 (282)
46 KOG2107 Uncharacterized conser 97.9 2.8E-05 6E-10 63.2 5.4 54 109-163 85-138 (179)
47 PF06052 3-HAO: 3-hydroxyanthr 97.8 0.0002 4.3E-09 57.5 9.6 78 100-182 36-113 (151)
48 PF05899 Cupin_3: Protein of u 97.8 8.2E-05 1.8E-09 52.9 6.3 59 97-162 7-65 (74)
49 COG3257 GlxB Uncharacterized p 97.7 0.00028 6E-09 60.1 9.9 74 98-177 62-136 (264)
50 COG3435 Gentisate 1,2-dioxygen 97.7 8.8E-05 1.9E-09 65.8 6.2 90 82-177 72-166 (351)
51 TIGR02272 gentisate_1_2 gentis 97.5 0.00046 9.9E-09 62.6 9.1 84 79-173 233-317 (335)
52 PF06249 EutQ: Ethanolamine ut 97.5 0.0004 8.8E-09 56.2 7.0 59 96-162 76-134 (152)
53 COG1898 RfbC dTDP-4-dehydrorha 97.2 0.0031 6.6E-08 52.2 9.4 66 106-172 54-128 (173)
54 COG4766 EutQ Ethanolamine util 97.1 0.0042 9E-08 50.2 8.4 62 96-165 99-160 (176)
55 COG3450 Predicted enzyme of th 97.0 0.0014 3.1E-08 50.7 5.4 59 97-162 45-103 (116)
56 TIGR01221 rmlC dTDP-4-dehydror 96.8 0.021 4.6E-07 47.3 11.2 63 105-168 52-124 (176)
57 PF05995 CDO_I: Cysteine dioxy 96.7 0.033 7.1E-07 45.9 11.7 83 96-178 74-164 (175)
58 PF00908 dTDP_sugar_isom: dTDP 96.7 0.0073 1.6E-07 50.0 7.4 63 105-168 51-124 (176)
59 COG3435 Gentisate 1,2-dioxygen 96.7 0.0071 1.5E-07 53.9 7.4 64 103-174 267-330 (351)
60 PF13621 Cupin_8: Cupin-like d 96.2 0.029 6.3E-07 47.3 8.6 69 99-169 132-236 (251)
61 PRK10572 DNA-binding transcrip 95.6 0.066 1.4E-06 46.7 8.3 48 112-165 44-91 (290)
62 PF08007 Cupin_4: Cupin superf 95.3 0.1 2.3E-06 46.9 8.8 67 98-165 114-200 (319)
63 PF04209 HgmA: homogentisate 1 95.3 0.086 1.9E-06 49.3 8.3 60 111-176 139-198 (424)
64 PF12852 Cupin_6: Cupin 95.3 0.039 8.4E-07 45.3 5.4 42 119-163 36-77 (186)
65 PF14499 DUF4437: Domain of un 95.1 0.016 3.6E-07 50.6 2.9 75 97-177 171-245 (251)
66 PRK05341 homogentisate 1,2-dio 95.0 0.2 4.4E-06 46.9 9.9 60 110-176 146-205 (438)
67 PF02678 Pirin: Pirin; InterP 95.0 0.083 1.8E-06 40.3 6.2 62 107-173 39-103 (107)
68 PLN02658 homogentisate 1,2-dio 94.6 0.32 6.8E-06 45.6 9.9 58 112-176 141-198 (435)
69 PF05118 Asp_Arg_Hydrox: Aspar 94.5 0.12 2.6E-06 42.0 6.4 82 87-174 68-156 (163)
70 PRK09685 DNA-binding transcrip 94.4 0.37 7.9E-06 42.1 9.7 65 96-165 44-113 (302)
71 TIGR01015 hmgA homogentisate 1 94.4 0.34 7.3E-06 45.4 9.7 62 110-177 140-201 (429)
72 KOG3995 3-hydroxyanthranilate 94.4 0.068 1.5E-06 45.5 4.6 56 105-162 41-96 (279)
73 COG3806 ChrR Transcriptional a 94.4 0.26 5.6E-06 41.6 8.0 86 76-177 112-197 (216)
74 PF07385 DUF1498: Protein of u 94.1 0.37 8.1E-06 41.3 8.6 76 102-180 92-190 (225)
75 COG1741 Pirin-related protein 94.1 0.22 4.7E-06 44.2 7.4 69 101-173 48-119 (276)
76 PF06865 DUF1255: Protein of u 94.0 0.47 1E-05 35.4 7.9 68 100-176 26-93 (94)
77 COG3257 GlxB Uncharacterized p 93.9 0.28 6E-06 42.1 7.5 76 90-172 175-251 (264)
78 PRK00924 5-keto-4-deoxyuronate 93.9 0.44 9.5E-06 42.2 8.9 84 95-181 173-262 (276)
79 PF02373 JmjC: JmjC domain, hy 93.8 0.11 2.3E-06 38.8 4.4 27 139-165 79-105 (114)
80 PF13759 2OG-FeII_Oxy_5: Putat 93.8 0.26 5.6E-06 36.5 6.4 71 102-173 5-98 (101)
81 PRK12335 tellurite resistance 93.7 0.34 7.5E-06 42.6 8.1 69 106-176 20-91 (287)
82 PRK10579 hypothetical protein; 93.6 1.1 2.4E-05 33.4 9.3 64 103-175 29-92 (94)
83 KOG3706 Uncharacterized conser 93.5 0.047 1E-06 51.6 2.3 61 102-163 321-403 (629)
84 PF07847 DUF1637: Protein of u 92.7 0.69 1.5E-05 39.1 8.1 83 93-177 40-142 (200)
85 COG5553 Predicted metal-depend 92.7 0.57 1.2E-05 38.4 7.1 77 97-176 73-155 (191)
86 TIGR02466 conserved hypothetic 92.6 0.83 1.8E-05 38.6 8.4 77 99-177 98-197 (201)
87 COG3508 HmgA Homogentisate 1,2 92.1 2 4.3E-05 39.5 10.6 63 106-175 133-196 (427)
88 PRK15131 mannose-6-phosphate i 91.5 1.7 3.6E-05 40.4 9.7 58 97-162 321-378 (389)
89 PF14525 AraC_binding_2: AraC- 90.8 3.8 8.3E-05 32.0 10.1 63 97-164 34-96 (172)
90 COG3822 ABC-type sugar transpo 90.6 1.2 2.6E-05 37.5 7.1 78 101-181 90-190 (225)
91 TIGR00218 manA mannose-6-phosp 90.6 2.2 4.8E-05 38.0 9.4 59 96-162 234-292 (302)
92 PF09313 DUF1971: Domain of un 90.5 3 6.6E-05 30.2 8.3 64 107-172 13-79 (82)
93 PLN02288 mannose-6-phosphate i 90.3 1.1 2.4E-05 41.8 7.4 58 96-157 333-390 (394)
94 PF11142 DUF2917: Protein of u 90.3 1 2.2E-05 31.0 5.5 57 102-163 2-58 (63)
95 KOG2757 Mannose-6-phosphate is 89.2 2.4 5.2E-05 39.1 8.4 74 96-176 332-405 (411)
96 PF05726 Pirin_C: Pirin C-term 89.1 1.8 3.9E-05 32.3 6.6 67 100-175 2-68 (104)
97 COG2850 Uncharacterized conser 87.6 0.97 2.1E-05 41.6 4.9 60 103-163 125-201 (383)
98 PRK09391 fixK transcriptional 87.6 6.9 0.00015 33.0 9.9 77 96-174 35-112 (230)
99 PF07172 GRP: Glycine rich pro 87.5 0.5 1.1E-05 35.3 2.5 17 3-19 1-17 (95)
100 PF00027 cNMP_binding: Cyclic 86.2 2.5 5.4E-05 29.1 5.5 48 103-151 3-51 (91)
101 PF06172 Cupin_5: Cupin superf 85.8 16 0.00035 29.0 12.3 84 96-183 40-130 (139)
102 PRK11753 DNA-binding transcrip 84.3 12 0.00026 30.5 9.6 54 99-153 20-74 (211)
103 PRK13918 CRP/FNR family transc 84.2 4.9 0.00011 32.6 7.2 54 101-154 8-63 (202)
104 PF04622 ERG2_Sigma1R: ERG2 an 82.5 4.3 9.4E-05 34.8 6.3 92 108-212 112-206 (216)
105 PRK00924 5-keto-4-deoxyuronate 82.2 11 0.00025 33.4 9.0 56 115-175 70-127 (276)
106 PF04962 KduI: KduI/IolB famil 81.4 37 0.0008 29.8 11.9 96 79-180 135-247 (261)
107 PLN02868 acyl-CoA thioesterase 79.6 7.8 0.00017 35.9 7.5 53 100-153 32-84 (413)
108 PF04962 KduI: KduI/IolB famil 79.2 12 0.00027 32.8 8.2 81 81-173 14-103 (261)
109 COG1482 ManA Phosphomannose is 77.1 10 0.00022 34.3 7.2 59 96-162 241-299 (312)
110 COG3123 Uncharacterized protei 76.1 11 0.00025 27.6 5.8 43 117-162 40-82 (94)
111 smart00100 cNMP Cyclic nucleot 74.9 18 0.0004 25.3 6.9 54 100-154 18-72 (120)
112 PHA02984 hypothetical protein; 74.0 20 0.00043 31.8 7.8 55 118-175 91-147 (286)
113 cd00038 CAP_ED effector domain 73.6 16 0.00035 25.5 6.3 53 100-153 18-71 (115)
114 PRK10402 DNA-binding transcrip 72.8 13 0.00028 31.1 6.5 52 102-154 34-86 (226)
115 COG1482 ManA Phosphomannose is 72.0 6.8 0.00015 35.4 4.7 21 142-162 159-179 (312)
116 TIGR00218 manA mannose-6-phosp 71.8 2.2 4.8E-05 38.0 1.6 20 142-161 152-171 (302)
117 PRK10202 ebgC cryptic beta-D-g 70.5 13 0.00029 29.7 5.7 52 111-162 58-127 (149)
118 PF04115 Ureidogly_hydro: Urei 67.6 29 0.00063 28.2 7.2 63 113-176 75-144 (165)
119 PRK15131 mannose-6-phosphate i 66.1 6.5 0.00014 36.6 3.4 23 140-162 236-258 (389)
120 TIGR03697 NtcA_cyano global ni 64.1 21 0.00046 28.5 5.8 37 117-153 10-47 (193)
121 COG2731 EbgC Beta-galactosidas 64.0 26 0.00055 28.5 6.1 60 106-165 57-136 (154)
122 KOG1417 Homogentisate 1,2-diox 63.7 86 0.0019 28.5 9.8 62 110-177 147-208 (446)
123 COG0664 Crp cAMP-binding prote 63.5 30 0.00064 27.5 6.6 56 99-155 23-79 (214)
124 PRK11161 fumarate/nitrate redu 63.0 33 0.00072 28.5 7.0 51 102-153 40-91 (235)
125 PRK15186 AraC family transcrip 61.5 34 0.00074 30.4 7.1 46 119-169 39-84 (291)
126 KOG3416 Predicted nucleic acid 61.5 36 0.00078 26.9 6.2 65 90-163 12-80 (134)
127 PF14801 GCD14_N: tRNA methylt 61.3 8.3 0.00018 25.8 2.3 36 130-165 11-46 (54)
128 PF13640 2OG-FeII_Oxy_3: 2OG-F 61.3 23 0.0005 25.3 5.1 63 102-164 4-86 (100)
129 PRK03606 ureidoglycolate hydro 60.1 68 0.0015 26.2 8.0 62 112-174 73-139 (162)
130 PHA02890 hypothetical protein; 59.2 30 0.00065 30.5 6.0 43 119-162 91-135 (278)
131 KOG4281 Uncharacterized conser 58.9 5.3 0.00011 34.2 1.3 40 96-135 74-113 (236)
132 COG3718 IolB Uncharacterized e 57.5 88 0.0019 27.4 8.5 83 79-165 14-101 (270)
133 PF04074 DUF386: Domain of unk 56.6 34 0.00075 27.1 5.7 53 110-162 61-134 (153)
134 COG3717 KduI 5-keto 4-deoxyuro 56.3 65 0.0014 28.2 7.5 89 92-183 172-266 (278)
135 KOG2131 Uncharacterized conser 55.9 13 0.00028 34.5 3.3 61 103-165 203-292 (427)
136 TIGR00022 uncharacterized prot 54.6 42 0.00092 26.4 5.9 26 109-134 60-85 (142)
137 PRK09392 ftrB transcriptional 53.1 38 0.00083 28.2 5.7 52 101-153 32-83 (236)
138 PF10731 Anophelin: Thrombin i 48.9 18 0.00038 24.8 2.3 17 3-19 1-17 (65)
139 PRK14585 pgaD putative PGA bio 47.1 22 0.00048 28.3 3.1 25 195-219 88-112 (137)
140 KOG2130 Phosphatidylserine-spe 46.7 29 0.00064 31.7 4.1 47 138-185 260-306 (407)
141 PF13464 DUF4115: Domain of un 44.2 1.1E+02 0.0023 21.2 7.8 48 124-173 4-52 (77)
142 PRK14584 hmsS hemin storage sy 43.4 30 0.00065 28.1 3.4 25 195-219 97-121 (153)
143 PLN03192 Voltage-dependent pot 41.8 63 0.0014 32.8 6.2 52 99-151 397-448 (823)
144 PF13994 PgaD: PgaD-like prote 41.7 33 0.00072 27.0 3.4 24 196-219 100-123 (138)
145 KOG0500 Cyclic nucleotide-gate 41.1 55 0.0012 31.6 5.2 47 102-151 333-379 (536)
146 PLN02288 mannose-6-phosphate i 40.9 22 0.00049 33.1 2.6 21 142-162 252-272 (394)
147 PF13348 Y_phosphatase3C: Tyro 40.9 27 0.00059 23.6 2.4 24 197-220 44-67 (68)
148 PRK02290 3-dehydroquinate synt 40.6 94 0.002 28.6 6.4 83 77-163 251-336 (344)
149 PF00166 Cpn10: Chaperonin 10 38.5 77 0.0017 23.1 4.7 55 106-163 21-76 (93)
150 PF06719 AraC_N: AraC-type tra 37.5 86 0.0019 24.9 5.2 52 119-175 24-77 (155)
151 PRK00364 groES co-chaperonin G 37.2 1.4E+02 0.0031 21.9 6.0 26 137-162 51-76 (95)
152 PHA00672 hypothetical protein 36.2 2.2E+02 0.0048 22.6 7.5 61 96-163 46-106 (152)
153 PF02787 CPSase_L_D3: Carbamoy 34.8 42 0.00091 26.0 2.9 25 196-220 72-96 (123)
154 PRK13395 ureidoglycolate hydro 33.9 2.7E+02 0.0058 22.9 7.7 64 112-176 73-142 (171)
155 PF01987 AIM24: Mitochondrial 32.3 88 0.0019 26.0 4.7 43 119-162 130-172 (215)
156 KOG0498 K+-channel ERG and rel 32.2 79 0.0017 32.0 5.0 48 103-151 446-493 (727)
157 KOG1356 Putative transcription 31.8 18 0.00039 36.8 0.4 57 104-165 762-823 (889)
158 COG1741 Pirin-related protein 30.2 3.9E+02 0.0085 23.7 10.4 42 88-131 165-206 (276)
159 PF01959 DHQS: 3-dehydroquinat 30.1 1.7E+02 0.0037 27.0 6.4 84 77-164 261-347 (354)
160 PF15240 Pro-rich: Proline-ric 29.5 38 0.00083 28.2 1.9 11 7-18 1-11 (179)
161 KOG1633 F-box protein JEMMA an 29.2 67 0.0015 32.7 3.9 72 99-172 138-226 (776)
162 cd00320 cpn10 Chaperonin 10 Kd 28.4 1.9E+02 0.0042 21.1 5.4 26 137-162 50-75 (93)
163 PF13384 HTH_23: Homeodomain-l 27.3 73 0.0016 19.8 2.6 25 196-220 17-41 (50)
164 PRK05467 Fe(II)-dependent oxyg 26.9 2E+02 0.0042 24.8 6.0 24 142-165 142-165 (226)
165 TIGR02408 ectoine_ThpD ectoine 25.2 98 0.0021 27.0 3.9 40 142-181 212-252 (277)
166 PF05293 ASFV_L11L: African sw 24.7 44 0.00096 23.2 1.2 7 29-35 43-49 (78)
167 PF02796 HTH_7: Helix-turn-hel 23.7 98 0.0021 19.2 2.7 29 188-218 15-43 (45)
168 PF03058 Sar8_2: Sar8.2 family 22.8 69 0.0015 23.7 2.0 18 3-20 1-18 (93)
169 PHA02699 hypothetical protein; 22.5 2.7E+02 0.006 26.0 6.2 59 119-179 168-227 (466)
170 PF12937 F-box-like: F-box-lik 21.8 1.2E+02 0.0026 18.6 2.8 21 196-216 3-24 (47)
171 KOG2968 Predicted esterase of 21.0 52 0.0011 34.2 1.4 62 90-152 499-561 (1158)
172 KOG2132 Uncharacterized conser 20.7 94 0.002 28.5 2.9 76 87-163 240-348 (355)
173 PF01238 PMI_typeI: Phosphoman 20.6 88 0.0019 28.8 2.8 20 143-162 252-271 (373)
No 1
>TIGR03404 bicupin_oxalic bicupin, oxalate decarboxylase family. Members of this protein family are defined as bicupins as they have two copies of the cupin domain (pfam00190). Two different known activities for members of this family are oxalate decarboxylase (EC 4.1.1.2) and oxalate oxidase (EC 1.2.3.4), although the latter activity has more often been found in distantly related monocupin (germin) proteins.
Probab=99.96 E-value=1.4e-27 Score=217.46 Aligned_cols=159 Identities=16% Similarity=0.238 Sum_probs=143.2
Q ss_pred CCCCCCcCCCeEeeccCCCCCCcCCcCCcEEEEeccCCCCCccccceEEEEEEEcCCcccCCccCCCCcEEEEEEeCeEE
Q 027536 51 LNPNSAVSSHFVTSALAKPGKTSGNIFGFNATLTNTKNLPGVNTMGLTMARIDIAANGIVPPHTHPRASEVTICLKGALL 130 (222)
Q Consensus 51 k~~~~v~~~dF~f~~l~~~~~~~~~~~g~~v~~~~~~~fP~l~~lgis~~~v~l~pGg~~~pH~H~~a~Ei~yVl~G~~~ 130 (222)
+.+..-.++.|.|+....++. ...||+++.+++.+||+++ ++++++++++||++.++|||++++|++||++|+++
T Consensus 204 ~~~~~~~~~~~~~~~~~~~p~---~~~gG~~~~~~~~~~p~~~--~~s~~~~~l~PG~~~~~H~H~~~~E~~yvl~G~~~ 278 (367)
T TIGR03404 204 TGPAGEVPGPFTYHLSEQKPK---QVPGGTVRIADSTNFPVSK--TIAAAIVTVEPGAMRELHWHPNADEWQYFIQGQAR 278 (367)
T ss_pred cCCCCCCCccEEEEhhhCCce---ecCCceEEEEChhhccCcc--eEEEEEEEECCCCccCCeeCcCCCeEEEEEEEEEE
Confidence 344555566799998777764 4678999999999999988 49999999999999999999999999999999999
Q ss_pred EEEEecCCcEEEEEECCCCEEEEcCCCeeEEEecCCCCCEEEEEEEeCCCCCcccchhhhhcCCCCCCHHHHHHHcCCCH
Q 027536 131 VGFVDTLGRLFTQQLRPGDSFVFPKGLIHFLYNMDSSKPALALSGLSSQNPGLQMTSMATFASKPPIPDEVLKKAFQITR 210 (222)
Q Consensus 131 ~~~v~~~~~~~~~~L~~GDv~viP~G~~H~~~N~g~~~~a~~i~~~~s~~pg~~~~~~~~f~~~~~ip~~vla~af~~~~ 210 (222)
+++.+++++.....+++||+++||+|..|+++|.| +++++++++|++..++.+.++ +|++ .+|++||+++|+++.
T Consensus 279 ~~v~d~~g~~~~~~l~~GD~~~iP~g~~H~i~N~G-~e~l~fL~if~s~~~~~i~l~-~~l~---~~p~~vl~~~~~~~~ 353 (367)
T TIGR03404 279 MTVFAAGGNARTFDYQAGDVGYVPRNMGHYVENTG-DETLVFLEVFKADRFADVSLN-QWLA---LTPPQLVAAHLNLDD 353 (367)
T ss_pred EEEEecCCcEEEEEECCCCEEEECCCCeEEEEECC-CCCEEEEEEECCCCCceeEHH-HHHh---hCCHHHHHHHhCcCH
Confidence 99998877766789999999999999999999999 999999999999999999886 6777 699999999999999
Q ss_pred HHHHHHHHh
Q 027536 211 QDVSIIRKN 219 (222)
Q Consensus 211 ~~v~~l~~~ 219 (222)
+++++|++.
T Consensus 354 ~~~~~l~~~ 362 (367)
T TIGR03404 354 EVIDSLKKE 362 (367)
T ss_pred HHHHhcccc
Confidence 999999864
No 2
>PLN00212 glutelin; Provisional
Probab=99.95 E-value=1e-26 Score=217.22 Aligned_cols=145 Identities=19% Similarity=0.313 Sum_probs=130.5
Q ss_pred CCCcCCcCCcEEEEeccCCCCCccccceEEEEEEEcCCcccCCccCCCCcEEEEEEeCeEEEEEEecC-CcEEEEEECCC
Q 027536 70 GKTSGNIFGFNATLTNTKNLPGVNTMGLTMARIDIAANGIVPPHTHPRASEVTICLKGALLVGFVDTL-GRLFTQQLRPG 148 (222)
Q Consensus 70 ~~~~~~~~g~~v~~~~~~~fP~l~~lgis~~~v~l~pGg~~~pH~H~~a~Ei~yVl~G~~~~~~v~~~-~~~~~~~L~~G 148 (222)
.+++ ++.+|+++.+++.+||+|+++++|+.+++|.||+|.+||||++|+|++||++|++++++++++ ++++..+|++|
T Consensus 322 ad~y-~~~~G~it~v~~~~~P~L~~L~LSa~rv~L~~gam~~PHwn~nA~eI~yV~rG~g~vqvV~~~g~~vf~~~L~~G 400 (493)
T PLN00212 322 ADTY-NPRAGRITRLNSQKFPILNLIQMSATRVNLYQNALLSPFWNVNAHSVVYITQGRARVQVVSNNGKTVFNGVLRPG 400 (493)
T ss_pred cCcc-CCCceEEEEechhhCccccccCeeEEEEEEcCCcccCCeecCCCCEEEEEeecceEEEEEcCCCCEEEEEEEcCC
Confidence 4677 899999999999999999999999999999999999999999999999999999999999987 57899999999
Q ss_pred CEEEEcCCCeeEEEecCCCCCEEEEEEEeCCCCCcccch--hhhhcCCCCCCHHHHHHHcCCCHHHHHHHHHhc
Q 027536 149 DSFVFPKGLIHFLYNMDSSKPALALSGLSSQNPGLQMTS--MATFASKPPIPDEVLKKAFQITRQDVSIIRKNL 220 (222)
Q Consensus 149 Dv~viP~G~~H~~~N~g~~~~a~~i~~~~s~~pg~~~~~--~~~f~~~~~ip~~vla~af~~~~~~v~~l~~~~ 220 (222)
|+|+||+|++|... ++ ++...+++..++.++-...++ .++|+ .||.+||+++|+++.+++++||.++
T Consensus 401 dvfVVPqg~~v~~~-A~-~egfe~v~F~tna~~~~s~laG~~Sv~~---alp~eVla~Af~is~eea~~lk~n~ 469 (493)
T PLN00212 401 QLLIIPQHYAVLKK-AE-REGCQYIAFKTNANAMVSHIAGKNSIFR---ALPVDVIANAYRISREEARRLKNNR 469 (493)
T ss_pred CEEEECCCCeEEEe-ec-CCceEEEEeecCCCccccccccHHHHHH---hCCHHHHHHHcCCCHHHHHHHHhcc
Confidence 99999999999886 45 677888877666555444443 68999 7999999999999999999999875
No 3
>PF00190 Cupin_1: Cupin; InterPro: IPR006045 This family represents the conserved barrel domain of the 'cupin' superfamily ('cupa' is the Latin term for a small barrel). This family contains 11S and 7S plant seed storage proteins, and germins. Plant seed storage proteins provide the major nitrogen source for the developing plant. ; GO: 0045735 nutrient reservoir activity; PDB: 2E9Q_A 2EVX_A 1OD5_A 1UCX_A 1UD1_C 1FXZ_C 3KGL_C 3KSC_D 1UIJ_F 1IPK_B ....
Probab=99.92 E-value=2.4e-24 Score=172.01 Aligned_cols=132 Identities=32% Similarity=0.493 Sum_probs=111.3
Q ss_pred CCCCCcCCcCCcEEEEeccCCCCCccccce-EEEEEEEcCCcccCCccCCCCcEEEEEEeCeEEEEEEecCC-----cEE
Q 027536 68 KPGKTSGNIFGFNATLTNTKNLPGVNTMGL-TMARIDIAANGIVPPHTHPRASEVTICLKGALLVGFVDTLG-----RLF 141 (222)
Q Consensus 68 ~~~~~~~~~~g~~v~~~~~~~fP~l~~lgi-s~~~v~l~pGg~~~pH~H~~a~Ei~yVl~G~~~~~~v~~~~-----~~~ 141 (222)
.+.++. +..+|+++.++..++|.+.++.. .+.+..++||++..|||| +|.|+.||++|+++++++++++ +..
T Consensus 5 ~~~~~~-~~~~G~~~~~~~~~~p~~~~~~~~~~~~~~i~pg~~~~Ph~h-~a~~i~~V~~G~~~~~~v~~~~~~~~~~~~ 82 (144)
T PF00190_consen 5 EPRPRV-SNEGGRIREADSEDFPILLGLNGVAVRRVLIEPGGLRAPHYH-NADEIVYVIEGRGRVGVVGPGGPQEEFRDF 82 (144)
T ss_dssp SSSEEE-EETTEEEEEESTTTSHCHHHHTTEEEEEEEEETTEEEEEEEE-SSEEEEEEEESEEEEEEEETTCSSSEEEEE
T ss_pred CCCCcc-cCCCEEEEEEChhhCcceecccceEEEeeehhcCCccceeEe-eeeEEeeeeccceEEEEEecCCccccceee
Confidence 344454 67789999999999997666655 455566799999999999 8999999999999999999865 355
Q ss_pred EEE--ECCCCEEEEcCCCeeEEEecCCCCCEEEEEEEeCCCCCcccchhhhhcCCCCCCHHHHHHHcCCCHHHHH
Q 027536 142 TQQ--LRPGDSFVFPKGLIHFLYNMDSSKPALALSGLSSQNPGLQMTSMATFASKPPIPDEVLKKAFQITRQDVS 214 (222)
Q Consensus 142 ~~~--L~~GDv~viP~G~~H~~~N~g~~~~a~~i~~~~s~~pg~~~~~~~~f~~~~~ip~~vla~af~~~~~~v~ 214 (222)
.++ +++||+++||+|.+||+.|.| +++...+.+|.+.+|..+ +|++|++++|+++.++++
T Consensus 83 ~~~v~l~~Gdv~~vP~G~~h~~~n~~-~~~~~~~~~f~~~~~~~~------------l~~~v~~~~F~~~~~~~~ 144 (144)
T PF00190_consen 83 SQKVRLKAGDVFVVPAGHPHWIINDG-DDEALVLIIFDTNNPPNQ------------LPPEVLAKAFFLSGEEVQ 144 (144)
T ss_dssp EEEEEEETTEEEEE-TT-EEEEEECS-SSSEEEEEEEEESSTTGE------------SSHHHHHHHEESSHHHHB
T ss_pred eceeeeecccceeeccceeEEEEcCC-CCCCEEEEEEECCCCccc------------CCcHHHHHhcCCCcCcCC
Confidence 566 999999999999999999999 899999999988877764 899999999999998863
No 4
>TIGR03404 bicupin_oxalic bicupin, oxalate decarboxylase family. Members of this protein family are defined as bicupins as they have two copies of the cupin domain (pfam00190). Two different known activities for members of this family are oxalate decarboxylase (EC 4.1.1.2) and oxalate oxidase (EC 1.2.3.4), although the latter activity has more often been found in distantly related monocupin (germin) proteins.
Probab=99.91 E-value=4.2e-23 Score=188.03 Aligned_cols=135 Identities=23% Similarity=0.310 Sum_probs=119.5
Q ss_pred cCCcEEEEeccCCCCCccccceEEEEEEEcCCcccCCccCCCCcEEEEEEeCeEEEEEEecCCcEEEEEECCCCEEEEcC
Q 027536 76 IFGFNATLTNTKNLPGVNTMGLTMARIDIAANGIVPPHTHPRASEVTICLKGALLVGFVDTLGRLFTQQLRPGDSFVFPK 155 (222)
Q Consensus 76 ~~g~~v~~~~~~~fP~l~~lgis~~~v~l~pGg~~~pH~H~~a~Ei~yVl~G~~~~~~v~~~~~~~~~~L~~GDv~viP~ 155 (222)
..||+++.++..+||++++ +++.++++.||++.++|||. +.|++||++|++++++++++++.+.++|++||+++||+
T Consensus 48 ~~gG~~~~~~~~~lP~l~~--ls~~~~~l~pG~~~~~HwH~-~~E~~yVl~G~~~v~~~d~~g~~~~~~L~~GD~~~fP~ 124 (367)
T TIGR03404 48 ENGGWAREVTVRDLPISTA--IAGVNMRLEPGAIRELHWHK-EAEWAYVLYGSCRITAVDENGRNYIDDVGAGDLWYFPP 124 (367)
T ss_pred ccCceEEEeChhhccCccc--ccceEEEEcCCCCCCcccCC-CceEEEEEeeEEEEEEEcCCCcEEEeEECCCCEEEECC
Confidence 3588999999999999996 79999999999999999996 68999999999999999988888878999999999999
Q ss_pred CCeeEEEecCCCCCEEEEEEEeCCC---CCcccchhhhhcCCCCCCHHHHHHHcCCCHHHHHHHHHh
Q 027536 156 GLIHFLYNMDSSKPALALSGLSSQN---PGLQMTSMATFASKPPIPDEVLKKAFQITRQDVSIIRKN 219 (222)
Q Consensus 156 G~~H~~~N~g~~~~a~~i~~~~s~~---pg~~~~~~~~f~~~~~ip~~vla~af~~~~~~v~~l~~~ 219 (222)
|.+|+++|.+ +++.++.+|+... +..+.+. .+|+ .+|++||+++|+++.+++++|++.
T Consensus 125 g~~H~~~n~~--~~~~~l~vf~~~~f~~~~~~~~~-~~l~---~~p~~Vla~~f~l~~~~~~~l~~~ 185 (367)
T TIGR03404 125 GIPHSLQGLD--EGCEFLLVFDDGNFSEDGTFLVT-DWLA---HTPKDVLAKNFGVPESAFDNLPLK 185 (367)
T ss_pred CCeEEEEECC--CCeEEEEEeCCcccCCcceeeHH-HHHH---hCCHHHHHHHhCCCHHHHHhcccc
Confidence 9999999986 4577888887653 4555565 5778 699999999999999999999874
No 5
>smart00835 Cupin_1 Cupin. This family represents the conserved barrel domain of the 'cupin' superfamily ('cupa' is the Latin term for a small barrel). This family contains 11S and 7S plant seed storage proteins, and germins. Plant seed storage proteins provide the major nitrogen source for the developing plant.
Probab=99.87 E-value=9.8e-21 Score=151.44 Aligned_cols=134 Identities=30% Similarity=0.583 Sum_probs=117.7
Q ss_pred CcCCcEEEEeccCCCCCccccceEEEEEEEcCCcccCCccCCCCcEEEEEEeCeEEEEEEecC-CcEEEEEECCCCEEEE
Q 027536 75 NIFGFNATLTNTKNLPGVNTMGLTMARIDIAANGIVPPHTHPRASEVTICLKGALLVGFVDTL-GRLFTQQLRPGDSFVF 153 (222)
Q Consensus 75 ~~~g~~v~~~~~~~fP~l~~lgis~~~v~l~pGg~~~pH~H~~a~Ei~yVl~G~~~~~~v~~~-~~~~~~~L~~GDv~vi 153 (222)
+..||+++.++..++|.+++.++.+.+++++||+..++|||+++.|++||++|++.+.+.+.. ++...+.+++||+++|
T Consensus 8 ~~~~g~~~~~~~~~~~~~~~~~~~~~~~~i~pg~~~~~h~H~~~~e~~~Vl~G~~~~~~~~~~~~~~~~~~l~~GD~~~i 87 (146)
T smart00835 8 SNEGGRLREADPTNFPALNGLGISAARVNLEPGGMLPPHYHPRATELLYVVRGEGRVGVVDPNGNKVYDARLREGDVFVV 87 (146)
T ss_pred cCCCceEEEeCchhCcccccCceEEEEEEecCCcCcCCeeCCCCCEEEEEEeCeEEEEEEeCCCCeEEEEEecCCCEEEE
Confidence 567888999999999999999999999999999999999999889999999999999987653 3456789999999999
Q ss_pred cCCCeeEEEecCCCCCEEEEEEEeCCCCCccc-ch--hhhhcCCCCCCHHHHHHHcCCCHHHH
Q 027536 154 PKGLIHFLYNMDSSKPALALSGLSSQNPGLQM-TS--MATFASKPPIPDEVLKKAFQITRQDV 213 (222)
Q Consensus 154 P~G~~H~~~N~g~~~~a~~i~~~~s~~pg~~~-~~--~~~f~~~~~ip~~vla~af~~~~~~v 213 (222)
|+|..|+..|.+ ++++++++ +.+++|.... ++ .++|+ ++++++++++|+++.+++
T Consensus 88 p~g~~H~~~n~~-~~~~~~l~-~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~ 145 (146)
T smart00835 88 PQGHPHFQVNSG-DENLEFVA-FNTNDPNRRFFLAGRNSVLR---GLPPEVLAAAFGVSAEEV 145 (146)
T ss_pred CCCCEEEEEcCC-CCCEEEEE-EecCCCCceeEeecccchhh---cCCHHHHHHHhCcChHHc
Confidence 999999999999 99999984 6667765532 21 47888 899999999999999875
No 6
>PLN00212 glutelin; Provisional
Probab=99.85 E-value=8.3e-20 Score=170.97 Aligned_cols=139 Identities=19% Similarity=0.282 Sum_probs=115.7
Q ss_pred CcCCcEEEEeccCCCCCccccceEEEEEEEcCCcccCCccCCCCcEEEEEEeCeEEEEEEecC-----CcEE--------
Q 027536 75 NIFGFNATLTNTKNLPGVNTMGLTMARIDIAANGIVPPHTHPRASEVTICLKGALLVGFVDTL-----GRLF-------- 141 (222)
Q Consensus 75 ~~~g~~v~~~~~~~fP~l~~lgis~~~v~l~pGg~~~pH~H~~a~Ei~yVl~G~~~~~~v~~~-----~~~~-------- 141 (222)
...||.+..++ .+-+.|...|+++.|+++.|+|+.+||+| ++.+++||++|++.++++.+. .+.+
T Consensus 59 ~se~G~~E~~~-~~~~q~~caGv~~~R~~i~p~gL~lP~y~-na~~liyV~qG~G~~G~v~pGcpeT~~~~~~~~~~~~~ 136 (493)
T PLN00212 59 RSEAGVTEYFD-EKNEQFQCTGVFVIRRVIEPQGLLLPRYS-NTPGLVYIIQGRGSMGLTFPGCPATYQQQFQQFLTEGQ 136 (493)
T ss_pred cccCceeeecC-CCChhhcccceEEEEEEecCCcccCcccc-CCCeEEEEEeCeEEEEEEeCCCcchhhhhccccccccc
Confidence 45677777777 56799999999999999999999999999 599999999999999999642 1111
Q ss_pred ------------EEEECCCCEEEEcCCCeeEEEecCCCCCEEEEEEEeCCCC--------Ccccch--------------
Q 027536 142 ------------TQQLRPGDSFVFPKGLIHFLYNMDSSKPALALSGLSSQNP--------GLQMTS-------------- 187 (222)
Q Consensus 142 ------------~~~L~~GDv~viP~G~~H~~~N~g~~~~a~~i~~~~s~~p--------g~~~~~-------------- 187 (222)
.+.|++||+++||+|++||++|.| +++++++++++..++ ..+.++
T Consensus 137 ~~~~~~~d~hqkv~~lr~GDViaiPaG~~hw~yN~G-d~~~v~v~~~d~~n~~Nqld~~~r~F~LaG~~~~~~~~~~~~~ 215 (493)
T PLN00212 137 SQSQKFRDEHQKIHQFRQGDVVALPAGVAHWFYNDG-DAPVVALYVYDINNNANQLEPRQREFLLAGNNNRQQQVYGRSI 215 (493)
T ss_pred ccccccccccccceEeccCCEEEECCCCeEEEEeCC-CCcEEEEEEEeccccccccCCCcceeeccCCCccccccccccc
Confidence 268999999999999999999999 999999888854332 223343
Q ss_pred -----hhhhcCCCCCCHHHHHHHcCCCHHHHHHHHHh
Q 027536 188 -----MATFASKPPIPDEVLKKAFQITRQDVSIIRKN 219 (222)
Q Consensus 188 -----~~~f~~~~~ip~~vla~af~~~~~~v~~l~~~ 219 (222)
.++|+ ++++++|+.||+++.++++||+..
T Consensus 216 ~~~~~~nifs---GF~~e~La~Afnv~~e~~~klq~~ 249 (493)
T PLN00212 216 EQHSGQNIFS---GFSTELLSEALGINAQVAKRLQSQ 249 (493)
T ss_pred cccccCchhh---cCCHHHHHHHHCCCHHHHHHHhcc
Confidence 23999 999999999999999999999743
No 7
>COG2140 Thermophilic glucose-6-phosphate isomerase and related metalloenzymes [Carbohydrate transport and metabolism / General function prediction only]
Probab=99.79 E-value=1.5e-18 Score=145.28 Aligned_cols=150 Identities=21% Similarity=0.231 Sum_probs=129.9
Q ss_pred cCCCeEeeccCCCCCCcCCcCCcEEEEeccCCCCCccccceEEEEEEEcCCcccCCccCCCCcE--EEEEEeCeEEEEEE
Q 027536 57 VSSHFVTSALAKPGKTSGNIFGFNATLTNTKNLPGVNTMGLTMARIDIAANGIVPPHTHPRASE--VTICLKGALLVGFV 134 (222)
Q Consensus 57 ~~~dF~f~~l~~~~~~~~~~~g~~v~~~~~~~fP~l~~lgis~~~v~l~pGg~~~pH~H~~a~E--i~yVl~G~~~~~~v 134 (222)
..+||+|..+...+. ..+|.+.......+|+- ....+.+.||++...||||++.| |.||++|++++.+-
T Consensus 49 ~~~~~~yel~~~~~~----~~~g~L~~~~t~~~pGs-----~g~e~~~t~G~~~~~H~Hp~ade~E~y~vi~G~g~m~v~ 119 (209)
T COG2140 49 KEDDFVYELLESEPG----ERGGDLRLDVTRIFPGS-----AGAEVFKTPGAMRELHYHPNADEPEIYYVLKGEGRMLVQ 119 (209)
T ss_pred CCCceEEEeeccccc----ccCCeEEEEeeccCCCc-----cceEEEecCCcccccccCCCCCcccEEEEEeccEEEEEE
Confidence 678899998765443 23899999999999976 56778999999999999999999 99999999999999
Q ss_pred ecCCcEEEEEECCCCEEEEcCCCeeEEEecCCCCCEEEEEEEeCCCCCcccchhhhhcCCCCCCHHHHHHHcCCCHHHHH
Q 027536 135 DTLGRLFTQQLRPGDSFVFPKGLIHFLYNMDSSKPALALSGLSSQNPGLQMTSMATFASKPPIPDEVLKKAFQITRQDVS 214 (222)
Q Consensus 135 ~~~~~~~~~~L~~GDv~viP~G~~H~~~N~g~~~~a~~i~~~~s~~pg~~~~~~~~f~~~~~ip~~vla~af~~~~~~v~ 214 (222)
+++|+..+..+++||+++||++..|+..|+| +++++++.++....+....+. ++.+ .++..+++..++.+...++
T Consensus 120 ~~~G~~~v~~~~~Gd~iyVPp~~gH~t~N~G-d~pLvf~~v~~~~~~~~y~~~-~~~~---~~~~~~~~~~~~~~~~~~D 194 (209)
T COG2140 120 KPEGEARVIAVRAGDVIYVPPGYGHYTINTG-DEPLVFLNVYPADAGQDYDLI-AWLG---GMPPVLVENGLNKNPKYVD 194 (209)
T ss_pred cCCCcEEEEEecCCcEEEeCCCcceEeecCC-CCCEEEEEEEeCCCCceeeee-ehhc---cCCceeeccccccCccccc
Confidence 9989999999999999999999999999999 999999999987777777664 4555 6999999999998888877
Q ss_pred HHHHhc
Q 027536 215 IIRKNL 220 (222)
Q Consensus 215 ~l~~~~ 220 (222)
.++.++
T Consensus 195 ~p~~~~ 200 (209)
T COG2140 195 VPRIKF 200 (209)
T ss_pred Cccccc
Confidence 776554
No 8
>PF07883 Cupin_2: Cupin domain; InterPro: IPR013096 This family represents the conserved barrel domain of the cupin superfamily [] (cupa is the Latin term for a small barrel). ; PDB: 2OPK_C 3BU7_B 2PHD_D 3NVC_A 3NKT_A 3NJZ_A 3NW4_A 3NST_A 3NL1_A 2H0V_A ....
Probab=99.49 E-value=1.4e-13 Score=95.81 Aligned_cols=70 Identities=30% Similarity=0.517 Sum_probs=63.6
Q ss_pred EEEEcCCcccCCccCCCCcEEEEEEeCeEEEEEEecCCcEEEEEECCCCEEEEcCCCeeEEEecCCCCCEEEEEEE
Q 027536 101 RIDIAANGIVPPHTHPRASEVTICLKGALLVGFVDTLGRLFTQQLRPGDSFVFPKGLIHFLYNMDSSKPALALSGL 176 (222)
Q Consensus 101 ~v~l~pGg~~~pH~H~~a~Ei~yVl~G~~~~~~v~~~~~~~~~~L~~GDv~viP~G~~H~~~N~g~~~~a~~i~~~ 176 (222)
+++++||+..++|+|+...|++||++|++++.+ +++ ...+++||.+++|+|..|...|.+ ++++.+++++
T Consensus 2 ~~~~~pG~~~~~h~H~~~~e~~~vl~G~~~~~~---~~~--~~~l~~Gd~~~i~~~~~H~~~n~~-~~~~~~l~V~ 71 (71)
T PF07883_consen 2 LVTLPPGGSIPPHRHPGEDEFFYVLSGEGTLTV---DGE--RVELKPGDAIYIPPGVPHQVRNPG-DEPARFLVVY 71 (71)
T ss_dssp EEEEETTEEEEEEEESSEEEEEEEEESEEEEEE---TTE--EEEEETTEEEEEETTSEEEEEEES-SSEEEEEEEE
T ss_pred EEEECCCCCCCCEECCCCCEEEEEEECCEEEEE---ccE--EeEccCCEEEEECCCCeEEEEECC-CCCEEEEEEC
Confidence 578999999999999975599999999999996 455 589999999999999999999999 9999998875
No 9
>COG1917 Uncharacterized conserved protein, contains double-stranded beta-helix domain [Function unknown]
Probab=99.42 E-value=2.6e-12 Score=100.65 Aligned_cols=85 Identities=25% Similarity=0.464 Sum_probs=72.2
Q ss_pred CCCCccccceEEEEEEEcCCcccCCccCCCCcEEEEEEeCeEEEEEEecCCcEEEEEECCCCEEEEcCCCeeEEEecCCC
Q 027536 88 NLPGVNTMGLTMARIDIAANGIVPPHTHPRASEVTICLKGALLVGFVDTLGRLFTQQLRPGDSFVFPKGLIHFLYNMDSS 167 (222)
Q Consensus 88 ~fP~l~~lgis~~~v~l~pGg~~~pH~H~~a~Ei~yVl~G~~~~~~v~~~~~~~~~~L~~GDv~viP~G~~H~~~N~g~~ 167 (222)
-++...+..+.+.++.++||+..++|+||...+.+||++|++++++ +++ .+.+++||++++|+|..|+..|.+ +
T Consensus 34 ~~~~~~~~~~~~~~v~~~~G~~~~~H~hp~~~~~~~Vl~G~~~~~~---~g~--~~~l~~Gd~i~ip~g~~H~~~a~~-~ 107 (131)
T COG1917 34 VLPRNEGENLSVVLVTFEPGAVIPWHTHPLGEQTIYVLEGEGTVQL---EGE--KKELKAGDVIIIPPGVVHGLKAVE-D 107 (131)
T ss_pred eccCCCCceEEEEEEEECCCcccccccCCCcceEEEEEecEEEEEe---cCC--ceEecCCCEEEECCCCeeeeccCC-C
Confidence 3444455678899999999999999999955899999999999999 344 589999999999999999999998 7
Q ss_pred CCEEEEEEEeC
Q 027536 168 KPALALSGLSS 178 (222)
Q Consensus 168 ~~a~~i~~~~s 178 (222)
+....++++..
T Consensus 108 ~~~~~l~v~~~ 118 (131)
T COG1917 108 EPMVLLLVFPL 118 (131)
T ss_pred CceeEEEEeee
Confidence 76677776654
No 10
>COG0662 {ManC} Mannose-6-phosphate isomerase [Carbohydrate transport and metabolism]
Probab=99.40 E-value=5.4e-12 Score=98.91 Aligned_cols=82 Identities=24% Similarity=0.291 Sum_probs=72.9
Q ss_pred cceEEEEEEEcCCcccCCccCCCCcEEEEEEeCeEEEEEEecCCcEEEEEECCCCEEEEcCCCeeEEEecCCCCCEEEEE
Q 027536 95 MGLTMARIDIAANGIVPPHTHPRASEVTICLKGALLVGFVDTLGRLFTQQLRPGDSFVFPKGLIHFLYNMDSSKPALALS 174 (222)
Q Consensus 95 lgis~~~v~l~pGg~~~pH~H~~a~Ei~yVl~G~~~~~~v~~~~~~~~~~L~~GDv~viP~G~~H~~~N~g~~~~a~~i~ 174 (222)
...++.++.+.||+...+|.|.+..|++||++|++.+.+ +++ ...|++||+++||+|..|...|.| ..++.++.
T Consensus 34 ~~~~~~~~~v~pg~~~~~~~H~~~dE~~~Vl~G~g~v~~---~~~--~~~v~~gd~~~iP~g~~H~~~N~G-~~~L~lie 107 (127)
T COG0662 34 DRYSIARILVKPGEEISLHHHHHRDEHWYVLEGTGKVTI---GGE--EVEVKAGDSVYIPAGTPHRVRNTG-KIPLVLIE 107 (127)
T ss_pred CcEEEEEEEECCCcccCcccccCcceEEEEEeeEEEEEE---CCE--EEEecCCCEEEECCCCcEEEEcCC-CcceEEEE
Confidence 367899999999999999999889999999999999999 454 589999999999999999999999 99999999
Q ss_pred EEeCCCCC
Q 027536 175 GLSSQNPG 182 (222)
Q Consensus 175 ~~~s~~pg 182 (222)
+......+
T Consensus 108 i~~p~~~~ 115 (127)
T COG0662 108 VQSPPYLG 115 (127)
T ss_pred EecCCcCC
Confidence 87544433
No 11
>PRK04190 glucose-6-phosphate isomerase; Provisional
Probab=99.34 E-value=2.3e-11 Score=101.86 Aligned_cols=89 Identities=21% Similarity=0.269 Sum_probs=76.1
Q ss_pred CCccccceEEEEEEEcCCcc------cCCccCCCC--cEEEEEEeCeEEEEEEecCCcEEEEEECCCCEEEEcCCCeeEE
Q 027536 90 PGVNTMGLTMARIDIAANGI------VPPHTHPRA--SEVTICLKGALLVGFVDTLGRLFTQQLRPGDSFVFPKGLIHFL 161 (222)
Q Consensus 90 P~l~~lgis~~~v~l~pGg~------~~pH~H~~a--~Ei~yVl~G~~~~~~v~~~~~~~~~~L~~GDv~viP~G~~H~~ 161 (222)
|.++.-++.+....++||.. .+.|+|++. .|+.||++|++.+.+.+.+++.....+++||+++||+|..|..
T Consensus 61 ~~~~~~~L~~g~t~l~PG~~g~e~~mt~gH~H~~~~~~EiyyvlsG~g~~~l~~~~G~~~~~~v~pGd~v~IPpg~~H~~ 140 (191)
T PRK04190 61 PEETEGDLNFGTTRLYPGKVGDEYFMTKGHFHAKADRAEIYYGLKGKGLMLLQDPEGEARWIEMEPGTVVYVPPYWAHRS 140 (191)
T ss_pred CCCcCCceEEEEEEECCCcEecccccCCCeEcCCCCCCEEEEEEeCEEEEEEecCCCcEEEEEECCCCEEEECCCCcEEe
Confidence 34555679999999999996 567999854 5999999999999987665555578999999999999999999
Q ss_pred EecCCCCCEEEEEEEeCC
Q 027536 162 YNMDSSKPALALSGLSSQ 179 (222)
Q Consensus 162 ~N~g~~~~a~~i~~~~s~ 179 (222)
.|.| ++++++++++...
T Consensus 141 iN~G-~epl~fl~v~p~~ 157 (191)
T PRK04190 141 VNTG-DEPLVFLACYPAD 157 (191)
T ss_pred EECC-CCCEEEEEEEcCC
Confidence 9999 9999999988543
No 12
>PRK13290 ectC L-ectoine synthase; Reviewed
Probab=99.34 E-value=1.9e-11 Score=95.91 Aligned_cols=81 Identities=21% Similarity=0.311 Sum_probs=69.5
Q ss_pred cceEEEEEEEcCCcccCCccCCCCcEEEEEEeCeEEEE-EEecCCcEEEEEECCCCEEEEcCCCeeEEEecCCCCCEEEE
Q 027536 95 MGLTMARIDIAANGIVPPHTHPRASEVTICLKGALLVG-FVDTLGRLFTQQLRPGDSFVFPKGLIHFLYNMDSSKPALAL 173 (222)
Q Consensus 95 lgis~~~v~l~pGg~~~pH~H~~a~Ei~yVl~G~~~~~-~v~~~~~~~~~~L~~GDv~viP~G~~H~~~N~g~~~~a~~i 173 (222)
.++++.++.++||+..+.|+|.. .|++||++|++++. +. +++ .+.|++||++++|++..|.+.|. ++++++
T Consensus 33 ~~~~~~~~~l~pG~~~~~h~h~~-~E~~yVL~G~~~~~~i~--~g~--~~~L~aGD~i~~~~~~~H~~~N~---e~~~~l 104 (125)
T PRK13290 33 MGFSFHETTIYAGTETHLHYKNH-LEAVYCIEGEGEVEDLA--TGE--VHPIRPGTMYALDKHDRHYLRAG---EDMRLV 104 (125)
T ss_pred CCEEEEEEEECCCCcccceeCCC-EEEEEEEeCEEEEEEcC--CCE--EEEeCCCeEEEECCCCcEEEEcC---CCEEEE
Confidence 35789999999999999999976 79999999999998 52 144 58999999999999999999984 789999
Q ss_pred EEEeCCCCCc
Q 027536 174 SGLSSQNPGL 183 (222)
Q Consensus 174 ~~~~s~~pg~ 183 (222)
++++..-+|.
T Consensus 105 ~v~tP~~~~~ 114 (125)
T PRK13290 105 CVFNPPLTGR 114 (125)
T ss_pred EEECCCCCCc
Confidence 9987655554
No 13
>COG3837 Uncharacterized conserved protein, contains double-stranded beta-helix domain [Function unknown]
Probab=99.14 E-value=3.4e-10 Score=90.98 Aligned_cols=84 Identities=25% Similarity=0.258 Sum_probs=69.7
Q ss_pred CCCCccccceEEEEEEEcCCcc-cCCccCCCCcEEEEEEeCeEEEEEEecCCcEEEEEECCCCEEEEcCC--CeeEEEec
Q 027536 88 NLPGVNTMGLTMARIDIAANGI-VPPHTHPRASEVTICLKGALLVGFVDTLGRLFTQQLRPGDSFVFPKG--LIHFLYNM 164 (222)
Q Consensus 88 ~fP~l~~lgis~~~v~l~pGg~-~~pH~H~~a~Ei~yVl~G~~~~~~v~~~~~~~~~~L~~GDv~viP~G--~~H~~~N~ 164 (222)
++-+|.. +.+....++||+. ...|||...+|++|||+|++++.+ ++. .+.|++||++-||+| ..|...|.
T Consensus 35 ~~~Gl~~--fGvn~~~v~PG~~Ss~~H~Hs~edEfv~ILeGE~~l~~---d~~--e~~lrpGD~~gFpAG~~~aHhliN~ 107 (161)
T COG3837 35 DALGLKR--FGVNLEIVEPGGESSLRHWHSAEDEFVYILEGEGTLRE---DGG--ETRLRPGDSAGFPAGVGNAHHLINR 107 (161)
T ss_pred hhcChhh--cccceEEeCCCCccccccccccCceEEEEEcCceEEEE---CCe--eEEecCCceeeccCCCcceeEEeec
Confidence 4456664 4455667899986 789999999999999999999988 444 479999999999999 99999999
Q ss_pred CCCCCEEEEEEEeCC
Q 027536 165 DSSKPALALSGLSSQ 179 (222)
Q Consensus 165 g~~~~a~~i~~~~s~ 179 (222)
| +..++.+++=+..
T Consensus 108 s-~~~~~yL~vG~r~ 121 (161)
T COG3837 108 S-DVILRYLEVGTRE 121 (161)
T ss_pred C-CceEEEEEecccc
Confidence 9 8888888875443
No 14
>TIGR01479 GMP_PMI mannose-1-phosphate guanylyltransferase/mannose-6-phosphate isomerase. This enzyme is known to be bifunctional, as both mannose-6-phosphate isomerase (EC 5.3.1.8) (PMI) and mannose-1-phosphate guanylyltransferase (EC 2.7.7.22) in Pseudomonas aeruginosa, Xanthomonas campestris, and Gluconacetobacter xylinus. The literature on the enzyme from E. coli attributes mannose-6-phosphate isomerase activity to an adjacent gene, but the present sequence has not been shown to lack the activity. The PMI domain is C-terminal.
Probab=99.14 E-value=5e-10 Score=105.42 Aligned_cols=77 Identities=23% Similarity=0.232 Sum_probs=70.5
Q ss_pred ceEEEEEEEcCCcccCCccCCCCcEEEEEEeCeEEEEEEecCCcEEEEEECCCCEEEEcCCCeeEEEecCCCCCEEEEEE
Q 027536 96 GLTMARIDIAANGIVPPHTHPRASEVTICLKGALLVGFVDTLGRLFTQQLRPGDSFVFPKGLIHFLYNMDSSKPALALSG 175 (222)
Q Consensus 96 gis~~~v~l~pGg~~~pH~H~~a~Ei~yVl~G~~~~~~v~~~~~~~~~~L~~GDv~viP~G~~H~~~N~g~~~~a~~i~~ 175 (222)
++.+.++.++||+..++|+|++..|.+||++|++++.+ +++ .+.|++||++++|+|..|.+.|.| +++++++++
T Consensus 375 ~~~~~~~~i~PG~~~~~h~H~~~~E~~~Vl~G~~~v~~---dg~--~~~l~~GDsi~ip~~~~H~~~N~g-~~~~~~i~v 448 (468)
T TIGR01479 375 RYQVKRITVKPGEKLSLQMHHHRAEHWIVVSGTARVTI---GDE--TLLLTENESTYIPLGVIHRLENPG-KIPLELIEV 448 (468)
T ss_pred CEEEEEEEECCCCccCccccCCCceEEEEEeeEEEEEE---CCE--EEEecCCCEEEECCCCcEEEEcCC-CCCEEEEEE
Confidence 57889999999999899999888999999999999998 565 589999999999999999999999 999999998
Q ss_pred EeC
Q 027536 176 LSS 178 (222)
Q Consensus 176 ~~s 178 (222)
...
T Consensus 449 ~~~ 451 (468)
T TIGR01479 449 QSG 451 (468)
T ss_pred EcC
Confidence 753
No 15
>PRK11171 hypothetical protein; Provisional
Probab=99.14 E-value=1.7e-09 Score=94.83 Aligned_cols=107 Identities=17% Similarity=0.095 Sum_probs=80.8
Q ss_pred CCCCcCCCeEeeccCCCCCCcCCcCCcEEEEeccCCCCCccccceEEEEEEEcCCcccCCccCC-CCcEEEEEEeCeEEE
Q 027536 53 PNSAVSSHFVTSALAKPGKTSGNIFGFNATLTNTKNLPGVNTMGLTMARIDIAANGIVPPHTHP-RASEVTICLKGALLV 131 (222)
Q Consensus 53 ~~~v~~~dF~f~~l~~~~~~~~~~~g~~v~~~~~~~fP~l~~lgis~~~v~l~pGg~~~pH~H~-~a~Ei~yVl~G~~~~ 131 (222)
.+-+++++.+.+.|..- .+..++.+... . ...++.+.+++++||+....|+|. ...|++||++|++++
T Consensus 28 ~a~~~p~~~v~~~lp~~-------~~~~~~~L~~~---~-~~~~~~~~~~~l~PG~~~~~~~h~~~~eE~~~VlsG~l~v 96 (266)
T PRK11171 28 YAVIPPDDIVTSVLPGW-------ENTRAWVLARP---G-LGATFSQYLVEVEPGGGSDQPEPDEGAETFLFVVEGEITL 96 (266)
T ss_pred eEEECCcCEEeecCCCC-------CCeEEEEEeCC---C-CCCcEEEEEEEECCCCcCCCCCCCCCceEEEEEEeCEEEE
Confidence 34455556666644211 12334444332 1 134688999999999987777776 568999999999999
Q ss_pred EEEecCCcEEEEEECCCCEEEEcCCCeeEEEecCCCCCEEEEEEE
Q 027536 132 GFVDTLGRLFTQQLRPGDSFVFPKGLIHFLYNMDSSKPALALSGL 176 (222)
Q Consensus 132 ~~v~~~~~~~~~~L~~GDv~viP~G~~H~~~N~g~~~~a~~i~~~ 176 (222)
.+ +++ .+.|++||.+++|++..|.+.|.| +++++++++.
T Consensus 97 ~~---~g~--~~~L~~GDsi~~p~~~~H~~~N~g-~~~a~~l~v~ 135 (266)
T PRK11171 97 TL---EGK--THALSEGGYAYLPPGSDWTLRNAG-AEDARFHWIR 135 (266)
T ss_pred EE---CCE--EEEECCCCEEEECCCCCEEEEECC-CCCEEEEEEE
Confidence 98 455 589999999999999999999999 9999999886
No 16
>PRK09943 DNA-binding transcriptional repressor PuuR; Provisional
Probab=99.12 E-value=8.8e-10 Score=91.32 Aligned_cols=75 Identities=19% Similarity=0.273 Sum_probs=64.0
Q ss_pred ceEEEEEEEcCCccc-CCccCCCCcEEEEEEeCeEEEEEEecCCcEEEEEECCCCEEEEcCCCeeEEEecCCCCCEEEEE
Q 027536 96 GLTMARIDIAANGIV-PPHTHPRASEVTICLKGALLVGFVDTLGRLFTQQLRPGDSFVFPKGLIHFLYNMDSSKPALALS 174 (222)
Q Consensus 96 gis~~~v~l~pGg~~-~pH~H~~a~Ei~yVl~G~~~~~~v~~~~~~~~~~L~~GDv~viP~G~~H~~~N~g~~~~a~~i~ 174 (222)
.+.+.+..++||+.. ..|+|+ ..|++||++|++.+.+ +++ .+.|++||.++||.+.+|.+.|.| ++++.+++
T Consensus 106 ~~~~~~~~~~pg~~~~~~~~h~-~~E~~~Vl~G~~~~~~---~~~--~~~l~~Gd~~~~~~~~~H~~~n~~-~~~~~~l~ 178 (185)
T PRK09943 106 TLAMIFETYQPGTTTGERIKHQ-GEEIGTVLEGEIVLTI---NGQ--DYHLVAGQSYAINTGIPHSFSNTS-AGICRIIS 178 (185)
T ss_pred eeEEEEEEccCCCCcccccccC-CcEEEEEEEeEEEEEE---CCE--EEEecCCCEEEEcCCCCeeeeCCC-CCCeEEEE
Confidence 456667788999864 466776 5999999999999998 455 589999999999999999999999 99999998
Q ss_pred EEe
Q 027536 175 GLS 177 (222)
Q Consensus 175 ~~~ 177 (222)
+..
T Consensus 179 ~~~ 181 (185)
T PRK09943 179 AHT 181 (185)
T ss_pred EeC
Confidence 764
No 17
>COG4101 Predicted mannose-6-phosphate isomerase [Carbohydrate transport and metabolism]
Probab=99.11 E-value=6.1e-10 Score=85.70 Aligned_cols=85 Identities=24% Similarity=0.336 Sum_probs=73.9
Q ss_pred ceEEEEEEEcCCcccCCccCCCCcEEEEEEeCeEEEEEEecCCcEEEEEECCCCEEEEcCCCeeEEEecCCCCCEEEEEE
Q 027536 96 GLTMARIDIAANGIVPPHTHPRASEVTICLKGALLVGFVDTLGRLFTQQLRPGDSFVFPKGLIHFLYNMDSSKPALALSG 175 (222)
Q Consensus 96 gis~~~v~l~pGg~~~pH~H~~a~Ei~yVl~G~~~~~~v~~~~~~~~~~L~~GDv~viP~G~~H~~~N~g~~~~a~~i~~ 175 (222)
++.+..++++||+...-|.|.+-+-.+||++|+..+++.+. -.+..++++||.||||+|++|.-.|.+ ++++..+.+
T Consensus 45 ~i~~~~vTi~pgAkakaH~H~~hEtaIYvlsG~ah~w~G~r--LE~ha~~~pGDf~YiPpgVPHqp~N~S-~ep~s~vIa 121 (142)
T COG4101 45 GICMHLVTIPPGAKAKAHLHEEHETAIYVLSGEAHTWYGNR--LEEHAEVGPGDFFYIPPGVPHQPANLS-TEPLSAVIA 121 (142)
T ss_pred eeeEEEEeeCCCccccccccccccEEEEEEeceeeeeeccc--eeeeEEecCCCeEEcCCCCCCcccccC-CCCeEEEEE
Confidence 68899999999999999999987778999999999999432 235688999999999999999999999 999999888
Q ss_pred EeCCCCCc
Q 027536 176 LSSQNPGL 183 (222)
Q Consensus 176 ~~s~~pg~ 183 (222)
.+..||..
T Consensus 122 RsDp~~~E 129 (142)
T COG4101 122 RSDPNPQE 129 (142)
T ss_pred ccCCCCCc
Confidence 87666543
No 18
>PRK15460 cpsB mannose-1-phosphate guanyltransferase; Provisional
Probab=99.10 E-value=7.2e-10 Score=104.50 Aligned_cols=76 Identities=21% Similarity=0.227 Sum_probs=69.5
Q ss_pred ceEEEEEEEcCCcccCCccCCCCcEEEEEEeCeEEEEEEecCCcEEEEEECCCCEEEEcCCCeeEEEecCCCCCEEEEEE
Q 027536 96 GLTMARIDIAANGIVPPHTHPRASEVTICLKGALLVGFVDTLGRLFTQQLRPGDSFVFPKGLIHFLYNMDSSKPALALSG 175 (222)
Q Consensus 96 gis~~~v~l~pGg~~~pH~H~~a~Ei~yVl~G~~~~~~v~~~~~~~~~~L~~GDv~viP~G~~H~~~N~g~~~~a~~i~~ 175 (222)
++.+.+++++||+....|+|....|.+||++|++++.+ +++ .+.|++||.++||+|..|.+.|.| ++++++|++
T Consensus 384 ~~~v~~i~v~PG~~~~~~~H~~~~E~~~VlsG~~~v~i---dg~--~~~L~~GDSi~ip~g~~H~~~N~g-~~~l~iI~V 457 (478)
T PRK15460 384 RYQVKRITVKPGEGLSVQMHHHRAEHWVVVAGTAKVTI---DGD--IKLLGENESIYIPLGATHCLENPG-KIPLDLIEV 457 (478)
T ss_pred cEEEEEEEECCCCcCCcCCCCCCceEEEEEeeEEEEEE---CCE--EEEecCCCEEEECCCCcEEEEcCC-CCCEEEEEE
Confidence 57889999999998888888878999999999999999 565 589999999999999999999999 999999998
Q ss_pred Ee
Q 027536 176 LS 177 (222)
Q Consensus 176 ~~ 177 (222)
..
T Consensus 458 ~~ 459 (478)
T PRK15460 458 RS 459 (478)
T ss_pred Ec
Confidence 64
No 19
>PF01050 MannoseP_isomer: Mannose-6-phosphate isomerase; InterPro: IPR001538 Mannose-6-phosphate isomerase or phosphomannose isomerase (5.3.1.8 from EC) (PMI) is the enzyme that catalyses the interconversion of mannose-6-phosphate and fructose-6-phosphate. In eukaryotes PMI is involved in the synthesis of GDP-mannose, a constituent of N- and O-linked glycans and GPI anchors and in prokaryotes it participates in a variety of pathways, including capsular polysaccharide biosynthesis and D-mannose metabolism. PMI's belong to the cupin superfamily whose functions range from isomerase and epimerase activities involved in the modification of cell wall carbohydrates in bacteria and plants, to non-enzymatic storage proteins in plant seeds, and transcription factors linked to congenital baldness in mammals []. Three classes of PMI have been defined []. The type II phosphomannose isomerases are bifunctional enzymes 5.3.1.8 from EC. This entry covers the isomerase region of the protein []. The guanosine diphospho-D-mannose pyrophosphorylase region is described in another InterPro entry (see IPR005836 from INTERPRO).; GO: 0016779 nucleotidyltransferase activity, 0005976 polysaccharide metabolic process
Probab=99.06 E-value=1.9e-09 Score=87.12 Aligned_cols=75 Identities=23% Similarity=0.279 Sum_probs=69.2
Q ss_pred ceEEEEEEEcCCcccCCccCCCCcEEEEEEeCeEEEEEEecCCcEEEEEECCCCEEEEcCCCeeEEEecCCCCCEEEEEE
Q 027536 96 GLTMARIDIAANGIVPPHTHPRASEVTICLKGALLVGFVDTLGRLFTQQLRPGDSFVFPKGLIHFLYNMDSSKPALALSG 175 (222)
Q Consensus 96 gis~~~v~l~pGg~~~pH~H~~a~Ei~yVl~G~~~~~~v~~~~~~~~~~L~~GDv~viP~G~~H~~~N~g~~~~a~~i~~ 175 (222)
+..+-++.+.||....+|.|.+..|..+|++|++.+.+ +++ .+.+++||.++||+|..|.+.|.| +.++++|.+
T Consensus 62 ~~~vkri~V~pG~~lSlq~H~~R~E~W~Vv~G~a~v~~---~~~--~~~~~~g~sv~Ip~g~~H~i~n~g-~~~L~~IEV 135 (151)
T PF01050_consen 62 GYKVKRITVNPGKRLSLQYHHHRSEHWTVVSGTAEVTL---DDE--EFTLKEGDSVYIPRGAKHRIENPG-KTPLEIIEV 135 (151)
T ss_pred CEEEEEEEEcCCCccceeeecccccEEEEEeCeEEEEE---CCE--EEEEcCCCEEEECCCCEEEEECCC-CcCcEEEEE
Confidence 57889999999999999999988999999999999998 455 589999999999999999999999 999999876
Q ss_pred E
Q 027536 176 L 176 (222)
Q Consensus 176 ~ 176 (222)
=
T Consensus 136 q 136 (151)
T PF01050_consen 136 Q 136 (151)
T ss_pred e
Confidence 4
No 20
>TIGR03214 ura-cupin putative allantoin catabolism protein. This model represents a protein containing a tandem arrangement of cupin domains (N-terminal part of pfam07883 and C-terminal more distantly related to pfam00190). This protein is found in the vicinity of genes involved in the catabolism of allantoin, a breakdown product of urate and sometimes of urate iteslf. The distribution of pathway components in the genomes in which this family is observed suggests that the function is linked to the allantoate catabolism to glyoxylate pathway (GenProp0686) since it is sometimes found in genomes lacking any elements of the xanthine-to-allantoin pathways (e.g. in Enterococcus faecalis).
Probab=99.02 E-value=2.7e-09 Score=93.38 Aligned_cols=72 Identities=13% Similarity=0.039 Sum_probs=63.7
Q ss_pred ceEEEEEEEcCCcccCC-ccCCCCcEEEEEEeCeEEEEEEecCCcEEEEEECCCCEEEEcCCCeeEEEecCCCCCEEEEE
Q 027536 96 GLTMARIDIAANGIVPP-HTHPRASEVTICLKGALLVGFVDTLGRLFTQQLRPGDSFVFPKGLIHFLYNMDSSKPALALS 174 (222)
Q Consensus 96 gis~~~v~l~pGg~~~p-H~H~~a~Ei~yVl~G~~~~~~v~~~~~~~~~~L~~GDv~viP~G~~H~~~N~g~~~~a~~i~ 174 (222)
++.+.+++++||+..+. |.|. -+|.+|||+|++.+.+ |++ ...+++||++++|++.+|+..|.| +++++++-
T Consensus 178 ~~~~~~~~~~PG~~~~~~~~H~-~eh~~yiL~G~G~~~~---~g~--~~~V~~GD~i~i~~~~~h~~~~~G-~~~~~~l~ 250 (260)
T TIGR03214 178 DMNVHILSFEPGASHPYIETHV-MEHGLYVLEGKGVYNL---DNN--WVPVEAGDYIWMGAYCPQACYAGG-RGEFRYLL 250 (260)
T ss_pred CcEEEEEEECCCcccCCccccc-ceeEEEEEeceEEEEE---CCE--EEEecCCCEEEECCCCCEEEEecC-CCcEEEEE
Confidence 57888899999999996 5555 5899999999999987 566 589999999999999999999999 99998874
No 21
>PRK11171 hypothetical protein; Provisional
Probab=98.91 E-value=1.2e-08 Score=89.48 Aligned_cols=74 Identities=14% Similarity=0.060 Sum_probs=65.1
Q ss_pred ceEEEEEEEcCCcccCCc-cCCCCcEEEEEEeCeEEEEEEecCCcEEEEEECCCCEEEEcCCCeeEEEecCCCCCEEEEE
Q 027536 96 GLTMARIDIAANGIVPPH-THPRASEVTICLKGALLVGFVDTLGRLFTQQLRPGDSFVFPKGLIHFLYNMDSSKPALALS 174 (222)
Q Consensus 96 gis~~~v~l~pGg~~~pH-~H~~a~Ei~yVl~G~~~~~~v~~~~~~~~~~L~~GDv~viP~G~~H~~~N~g~~~~a~~i~ 174 (222)
+..+.+++++||+..+.| +|. ..|.+||++|++++.+ +++ .+.|++||++.+|++..|++.|.| +++++++.
T Consensus 183 ~~~~~~~~l~PG~~~~~~~~~~-~ee~i~Vl~G~~~~~~---~~~--~~~l~~GD~i~~~~~~~h~~~N~g-~~~~~yl~ 255 (266)
T PRK11171 183 DMHVNIVTFEPGASIPFVETHV-MEHGLYVLEGKGVYRL---NND--WVEVEAGDFIWMRAYCPQACYAGG-PGPFRYLL 255 (266)
T ss_pred CcEEEEEEECCCCEEccCcCCC-ceEEEEEEeCEEEEEE---CCE--EEEeCCCCEEEECCCCCEEEECCC-CCcEEEEE
Confidence 468889999999998885 555 6999999999999988 565 589999999999999999999999 99999875
Q ss_pred EE
Q 027536 175 GL 176 (222)
Q Consensus 175 ~~ 176 (222)
.-
T Consensus 256 ~k 257 (266)
T PRK11171 256 YK 257 (266)
T ss_pred Ec
Confidence 43
No 22
>TIGR03214 ura-cupin putative allantoin catabolism protein. This model represents a protein containing a tandem arrangement of cupin domains (N-terminal part of pfam07883 and C-terminal more distantly related to pfam00190). This protein is found in the vicinity of genes involved in the catabolism of allantoin, a breakdown product of urate and sometimes of urate iteslf. The distribution of pathway components in the genomes in which this family is observed suggests that the function is linked to the allantoate catabolism to glyoxylate pathway (GenProp0686) since it is sometimes found in genomes lacking any elements of the xanthine-to-allantoin pathways (e.g. in Enterococcus faecalis).
Probab=98.91 E-value=1.7e-08 Score=88.25 Aligned_cols=76 Identities=17% Similarity=0.145 Sum_probs=65.6
Q ss_pred ceEEEEEEEcCCccc-CCccCCCCcEEEEEEeCeEEEEEEecCCcEEEEEECCCCEEEEcCCCeeEEEecCCCCCEEEEE
Q 027536 96 GLTMARIDIAANGIV-PPHTHPRASEVTICLKGALLVGFVDTLGRLFTQQLRPGDSFVFPKGLIHFLYNMDSSKPALALS 174 (222)
Q Consensus 96 gis~~~v~l~pGg~~-~pH~H~~a~Ei~yVl~G~~~~~~v~~~~~~~~~~L~~GDv~viP~G~~H~~~N~g~~~~a~~i~ 174 (222)
.+.+.+++++||+-. .+|+|+...|++||++|++++.+ +++ ++.|++||.+++|+|..|.+.|.+ ++++++++
T Consensus 57 ~f~~~~v~l~pgg~~~~~~~~~g~ee~iyVl~G~l~v~~---~g~--~~~L~~Gd~~y~pa~~~H~~~N~~-~~~a~~l~ 130 (260)
T TIGR03214 57 TFVQYIVEVHPGGGNTTGFGGEGIETFLFVISGEVNVTA---EGE--THELREGGYAYLPPGSKWTLANAQ-AEDARFFL 130 (260)
T ss_pred cEEEEEEEECCCCcCCCCCCCCceEEEEEEEeCEEEEEE---CCE--EEEECCCCEEEECCCCCEEEEECC-CCCEEEEE
Confidence 578889999998764 46667766899999999999987 455 579999999999999999999999 99999988
Q ss_pred EEe
Q 027536 175 GLS 177 (222)
Q Consensus 175 ~~~ 177 (222)
+-.
T Consensus 131 v~k 133 (260)
T TIGR03214 131 YKK 133 (260)
T ss_pred EEe
Confidence 763
No 23
>PF02041 Auxin_BP: Auxin binding protein; InterPro: IPR000526 Auxin binding protein is located in the lumen of the endoplasmic reticulum (ER). The primary structure contains an N-terminal hydrophobic leader sequence of 30-40 amino acids, which could represent a signal for translocation of the protein to the ER [, ]. The mature protein comprises around 165 residues, and contains a number of potential N-glycosylation sites. In vitro transport studies have demonstrated co-translational glycosylation []. Retention within the lumen of the ER correlates with an additional signal located at the C terminus, represented by the sequence Lys-Asp-Glu-Leu, known to be responsible for preventing secretion of proteins from the lumen of the ER in eukaryotic cells [, ].; GO: 0004872 receptor activity, 0005788 endoplasmic reticulum lumen; PDB: 1LR5_D 1LRH_D.
Probab=98.80 E-value=4.6e-08 Score=78.16 Aligned_cols=107 Identities=20% Similarity=0.233 Sum_probs=62.7
Q ss_pred cEEEEeccCCCCCccccceEEEEEEEcCCcccCCccCCCCcEEEEEEeCeEEEEEEecC----CcEEEEEECCCCEEEEc
Q 027536 79 FNATLTNTKNLPGVNTMGLTMARIDIAANGIVPPHTHPRASEVTICLKGALLVGFVDTL----GRLFTQQLRPGDSFVFP 154 (222)
Q Consensus 79 ~~v~~~~~~~fP~l~~lgis~~~v~l~pGg~~~pH~H~~a~Ei~yVl~G~~~~~~v~~~----~~~~~~~L~~GDv~viP 154 (222)
..+|.+-. -.-|+. .+.+.+-++.||...|+|.|. .+|+++|++|+++..+.... |+.....+.+++.|.||
T Consensus 29 sH~TvAGa-~~hGmk--evEVwlQTfAPG~~TPiHRHs-CEEVFvVLkG~GTl~l~~~~~~~pG~pqef~~~pnSTf~IP 104 (167)
T PF02041_consen 29 SHITVAGA-LLHGMK--EVEVWLQTFAPGSATPIHRHS-CEEVFVVLKGSGTLYLASSHEKYPGKPQEFPIFPNSTFHIP 104 (167)
T ss_dssp EEEEEE-H-HHH--S--SEEEEEEEE-TT-B--EEEES-S-EEEEEEE--EEEEE--SSSSS--S-EEEEE-TTEEEEE-
T ss_pred ceEEeehh-hhcCce--eeeEEeeeecCCCCCCCcccc-ccEEEEEEecceEEEEecccccCCCCceEEEecCCCeEEeC
Confidence 45555432 122344 457777899999999999998 69999999999999997653 66667899999999999
Q ss_pred CCCeeEEEecCCCCCEEEEEEEeCCCCCcccchhhh
Q 027536 155 KGLIHFLYNMDSSKPALALSGLSSQNPGLQMTSMAT 190 (222)
Q Consensus 155 ~G~~H~~~N~g~~~~a~~i~~~~s~~pg~~~~~~~~ 190 (222)
.+..|.+.|.+..+++.++++++ ..|-.+.+-..|
T Consensus 105 vn~~HQv~NT~e~eDlqvlViiS-rpPvkvf~y~dw 139 (167)
T PF02041_consen 105 VNDAHQVWNTNEHEDLQVLVIIS-RPPVKVFIYDDW 139 (167)
T ss_dssp TT--EEEE---SSS-EEEEEEEE-SSS--EEEESST
T ss_pred CCCcceeecCCCCcceEEEEEec-CCCeEEEEeccc
Confidence 99999999998348898887764 556555543333
No 24
>PF06560 GPI: Glucose-6-phosphate isomerase (GPI); InterPro: IPR010551 This entry consists of several bacterial and archaeal glucose-6-phosphate isomerase (GPI) proteins (5.3.1.9 from EC), which are involved in glycolysis and in gluconeogenesis and catalyse the conversion of D-glucose 6-phosphate to D-fructose 6-phosphate. The deduced amino acid sequence of the first archaeal PGI isolated from Pyrococcus furiosus revealed that it is not related to its eukaryotic and many of its bacterial counterparts. In contrast, this archaeal PGI shares similarity with the cupin superfamily that consists of a variety of proteins that are generally involved in sugar metabolism in both prokaryotes and eukaryotes [].; GO: 0004347 glucose-6-phosphate isomerase activity, 0006094 gluconeogenesis, 0006096 glycolysis, 0005737 cytoplasm; PDB: 1J3Q_B 1J3R_B 1J3P_A 2GC0_A 1X8E_A 1X82_A 1QY4_B 2GC2_B 1QXJ_A 1QXR_B ....
Probab=98.74 E-value=1.7e-07 Score=77.85 Aligned_cols=86 Identities=22% Similarity=0.308 Sum_probs=58.4
Q ss_pred ccccceEEEEEEEcCCcc------cCCccCCC------CcEEEEEEeCeEEEEEEecCC----cEEEEEECCCCEEEEcC
Q 027536 92 VNTMGLTMARIDIAANGI------VPPHTHPR------ASEVTICLKGALLVGFVDTLG----RLFTQQLRPGDSFVFPK 155 (222)
Q Consensus 92 l~~lgis~~~v~l~pGg~------~~pH~H~~------a~Ei~yVl~G~~~~~~v~~~~----~~~~~~L~~GDv~viP~ 155 (222)
+...++......+.||.+ ..=|+|+. ..|+.+|++|++.+-+-+.++ +.+...+++||+++||+
T Consensus 45 ~~~~~L~ygiTvi~Pg~vG~E~~~T~GH~H~~~~~~~~~pEvY~vl~G~g~~lLq~~~~~~~~~~~~v~~~~G~~v~IPp 124 (182)
T PF06560_consen 45 LQKRNLRYGITVIPPGKVGGEYFMTKGHYHPISPCGLSYPEVYEVLSGEGLILLQKEEGDDVGDVIAVEAKPGDVVYIPP 124 (182)
T ss_dssp -----EEEEEEEE---EETTEE-B---BB-SS----TT--EEEEEEESSEEEEEE-TTS-----EEEEEE-TTEEEEE-T
T ss_pred ceeeeEEeeeEEEcCcccCCccccCCCccCCccccCCCCCcEEEEEeCEEEEEEEecCCCcceeEEEEEeCCCCEEEECC
Confidence 344467888888899864 34699997 799999999999999988777 77789999999999999
Q ss_pred CCeeEEEecCCCCCEEEEEEEeC
Q 027536 156 GLIHFLYNMDSSKPALALSGLSS 178 (222)
Q Consensus 156 G~~H~~~N~g~~~~a~~i~~~~s 178 (222)
+..|...|+| ++++++.+...+
T Consensus 125 ~yaH~tIN~g-~~~L~~~~~~~~ 146 (182)
T PF06560_consen 125 GYAHRTINTG-DEPLVFAAWVPR 146 (182)
T ss_dssp T-EEEEEE-S-SS-EEEEEEEET
T ss_pred CceEEEEECC-CCcEEEEEEEec
Confidence 9999999999 999999887753
No 25
>PRK13264 3-hydroxyanthranilate 3,4-dioxygenase; Provisional
Probab=98.72 E-value=8.6e-08 Score=79.07 Aligned_cols=69 Identities=19% Similarity=0.266 Sum_probs=56.1
Q ss_pred EEEcCCcccCCccCCCCcEEEEEEeCeEEEEEEecCCcEEEEEECCCCEEEEcCCCeeEEEecCCCCCEEEEEE
Q 027536 102 IDIAANGIVPPHTHPRASEVTICLKGALLVGFVDTLGRLFTQQLRPGDSFVFPKGLIHFLYNMDSSKPALALSG 175 (222)
Q Consensus 102 v~l~pGg~~~pH~H~~a~Ei~yVl~G~~~~~~v~~~~~~~~~~L~~GDv~viP~G~~H~~~N~g~~~~a~~i~~ 175 (222)
+.-.||....+|+|+ ..|++|+++|++++.+.+. |+.....|++||++++|+|..|.... .++...+.+
T Consensus 39 vvgGpn~r~d~H~~~-tdE~FyqleG~~~l~v~d~-g~~~~v~L~eGd~fllP~gvpHsP~r---~~~tv~Lvi 107 (177)
T PRK13264 39 VVGGPNARTDFHYDP-GEEFFYQLEGDMYLKVQED-GKRRDVPIREGEMFLLPPHVPHSPQR---EAGSIGLVI 107 (177)
T ss_pred EEccCCcccccccCC-CceEEEEECCeEEEEEEcC-CceeeEEECCCCEEEeCCCCCcCCcc---CCCeEEEEE
Confidence 444677788899998 6999999999999999884 65457899999999999999999864 344555444
No 26
>TIGR03037 anthran_nbaC 3-hydroxyanthranilate 3,4-dioxygenase. Members of this protein family, from both bacteria and eukaryotes, are the enzyme 3-hydroxyanthranilate 3,4-dioxygenase. This enzyme acts on the tryptophan metabolite 3-hydroxyanthranilate and produces 2-amino-3-carboxymuconate semialdehyde, which can rearrange spontaneously to quinolinic acid and feed into nicotinamide biosynthesis, or undergo further enzymatic degradation.
Probab=98.65 E-value=2.1e-07 Score=75.60 Aligned_cols=67 Identities=22% Similarity=0.300 Sum_probs=53.2
Q ss_pred cCCcccCCccCCCCcEEEEEEeCeEEEEEEecCCcEEEEEECCCCEEEEcCCCeeEEEecCCCCCEEEEEEE
Q 027536 105 AANGIVPPHTHPRASEVTICLKGALLVGFVDTLGRLFTQQLRPGDSFVFPKGLIHFLYNMDSSKPALALSGL 176 (222)
Q Consensus 105 ~pGg~~~pH~H~~a~Ei~yVl~G~~~~~~v~~~~~~~~~~L~~GDv~viP~G~~H~~~N~g~~~~a~~i~~~ 176 (222)
.||....+|.|+ ..|++|+++|++.+.+.+. |+.....|++||++++|+|..|..... ++...+.+=
T Consensus 36 Gpn~R~d~H~~~-tdE~FyqleG~~~l~v~d~-g~~~~v~L~eGd~flvP~gvpHsP~r~---~~t~~LvIE 102 (159)
T TIGR03037 36 GPNARTDFHDDP-GEEFFYQLKGEMYLKVTEE-GKREDVPIREGDIFLLPPHVPHSPQRP---AGSIGLVIE 102 (159)
T ss_pred CCCCCcccccCC-CceEEEEEcceEEEEEEcC-CcEEEEEECCCCEEEeCCCCCcccccC---CCcEEEEEE
Confidence 566667788888 6999999999999998775 554578999999999999999998753 334444443
No 27
>PF11699 CENP-C_C: Mif2/CENP-C like; PDB: 2VPV_B.
Probab=98.53 E-value=9.9e-07 Score=64.69 Aligned_cols=72 Identities=19% Similarity=0.295 Sum_probs=54.3
Q ss_pred ceEEEEEEEcCCcccCCccCCCCcEEEEEEeCeEEEEEEecCCcEEEEEECCCCEEEEcCCCeeEEEecCCCCCEEEE
Q 027536 96 GLTMARIDIAANGIVPPHTHPRASEVTICLKGALLVGFVDTLGRLFTQQLRPGDSFVFPKGLIHFLYNMDSSKPALAL 173 (222)
Q Consensus 96 gis~~~v~l~pGg~~~pH~H~~a~Ei~yVl~G~~~~~~v~~~~~~~~~~L~~GDv~viP~G~~H~~~N~g~~~~a~~i 173 (222)
.++...++|+||+.-++-.-.+..-++||++|.+++.+ ++. ...+.+|++|.||+|-.-.+.|.+ +++|.++
T Consensus 11 ~fa~G~l~Lpp~~~K~~k~s~~~~~vF~V~~G~v~Vti---~~~--~f~v~~G~~F~VP~gN~Y~i~N~~-~~~a~Lf 82 (85)
T PF11699_consen 11 FFASGMLELPPGGEKPPKNSRDNTMVFYVIKGKVEVTI---HET--SFVVTKGGSFQVPRGNYYSIKNIG-NEEAKLF 82 (85)
T ss_dssp S-EEEEEEE-TCCCEEEEE--SEEEEEEEEESEEEEEE---TTE--EEEEETT-EEEE-TT-EEEEEE-S-SS-EEEE
T ss_pred CceeEEEEeCCCCccCCcccCCcEEEEEEEeCEEEEEE---cCc--EEEEeCCCEEEECCCCEEEEEECC-CCcEEEE
Confidence 46888999999998655433346888999999999999 454 579999999999999999999999 9999886
No 28
>PF02311 AraC_binding: AraC-like ligand binding domain; InterPro: IPR003313 This entry defines the arabinose-binding and dimerisation domain of the bacterial gene regulatory protein AraC. The crystal structure of the arabinose-binding and dimerization domain of the Escherichia coli gene regulatory protein AraC was determined in the presence and absence of L-arabinose. The arabinose-bound molecule shows that the protein adopts an unusual fold, binding sugar within a beta barrel and completely burying the arabinose with the amino-terminal arm of the protein. Dimer contacts in the presence of arabinose are mediated by an antiparallel coiled-coil. In the uncomplexed protein, the amino-terminal arm is disordered, uncovering the sugar-binding pocket and allowing it to serve as an oligomerization interface [].; GO: 0006355 regulation of transcription, DNA-dependent; PDB: 1XJA_B 2ARA_A 2AAC_B 2ARC_A.
Probab=98.52 E-value=4.6e-07 Score=68.86 Aligned_cols=65 Identities=29% Similarity=0.359 Sum_probs=47.1
Q ss_pred CCcccCCccCCCCcEEEEEEeCeEEEEEEecCCcEEEEEECCCCEEEEcCCCeeEEEecCCCCCEEEEEEEe
Q 027536 106 ANGIVPPHTHPRASEVTICLKGALLVGFVDTLGRLFTQQLRPGDSFVFPKGLIHFLYNMDSSKPALALSGLS 177 (222)
Q Consensus 106 pGg~~~pH~H~~a~Ei~yVl~G~~~~~~v~~~~~~~~~~L~~GDv~viP~G~~H~~~N~g~~~~a~~i~~~~ 177 (222)
++-..++|+|+ ..|+.||++|++++.+ +++ .+.+++||++++|+|..|.....+ +++...+.+.-
T Consensus 12 ~~~~~~~h~h~-~~~i~~v~~G~~~~~~---~~~--~~~l~~g~~~li~p~~~H~~~~~~-~~~~~~~~i~~ 76 (136)
T PF02311_consen 12 PNFEFPPHWHD-FYEIIYVLSGEGTLHI---DGQ--EYPLKPGDLFLIPPGQPHSYYPDS-NEPWEYYWIYF 76 (136)
T ss_dssp TT-SEEEETT--SEEEEEEEEE-EEEEE---TTE--EEEE-TT-EEEE-TTS-EEEEE-T-TSEEEEEEEEE
T ss_pred CCCccCCEECC-CEEEEEEeCCEEEEEE---CCE--EEEEECCEEEEecCCccEEEecCC-CCCEEEEEEEE
Confidence 44567889999 5999999999999988 566 589999999999999999998766 55777666653
No 29
>PF12973 Cupin_7: ChrR Cupin-like domain; PDB: 3O14_B 2Z2S_F 2Q1Z_B 3EBR_A.
Probab=98.43 E-value=4.3e-07 Score=66.89 Aligned_cols=81 Identities=22% Similarity=0.357 Sum_probs=58.8
Q ss_pred CCcEEEEeccCCCCCccccceEEEEEEEcCCcccCCccCCCCcEEEEEEeCeEEEEEEecCCcEEEEEECCCCEEEEcCC
Q 027536 77 FGFNATLTNTKNLPGVNTMGLTMARIDIAANGIVPPHTHPRASEVTICLKGALLVGFVDTLGRLFTQQLRPGDSFVFPKG 156 (222)
Q Consensus 77 ~g~~v~~~~~~~fP~l~~lgis~~~v~l~pGg~~~pH~H~~a~Ei~yVl~G~~~~~~v~~~~~~~~~~L~~GDv~viP~G 156 (222)
.|.++..+.... . ..+..+..++++||+..|.|.|+ +.|.+|||+|++.. . + ..+.+||.++.|+|
T Consensus 8 ~Gv~~~~L~~~~--~--~~g~~~~L~r~~pG~~~p~H~H~-g~ee~~VLeG~~~d----~-~----~~~~~G~~~~~p~g 73 (91)
T PF12973_consen 8 PGVSVKPLHRDE--G--ETGERVSLLRLEPGASLPRHRHP-GGEEILVLEGELSD----G-D----GRYGAGDWLRLPPG 73 (91)
T ss_dssp TTEEEEEEEECS--S--STTEEEEEEEE-TTEEEEEEEES-S-EEEEEEECEEEE----T-T----CEEETTEEEEE-TT
T ss_pred CCEEEEEeccCC--C--cccCEEEEEEECCCCCcCccCCC-CcEEEEEEEEEEEE----C-C----ccCCCCeEEEeCCC
Confidence 355555555322 1 12568889999999999999999 58888999999883 2 2 25699999999999
Q ss_pred CeeEEEecCCCCCEEEEE
Q 027536 157 LIHFLYNMDSSKPALALS 174 (222)
Q Consensus 157 ~~H~~~N~g~~~~a~~i~ 174 (222)
..|... + ++++.++.
T Consensus 74 ~~h~~~--s-~~gc~~~v 88 (91)
T PF12973_consen 74 SSHTPR--S-DEGCLILV 88 (91)
T ss_dssp EEEEEE--E-SSCEEEEE
T ss_pred CccccC--c-CCCEEEEE
Confidence 999997 3 56677764
No 30
>PRK10371 DNA-binding transcriptional regulator MelR; Provisional
Probab=98.38 E-value=1.7e-06 Score=76.88 Aligned_cols=61 Identities=16% Similarity=0.086 Sum_probs=51.0
Q ss_pred EEEEEEcCCcccCCccCCCCcEEEEEEeCeEEEEEEecCCcEEEEEECCCCEEEEcCCCeeEEEecC
Q 027536 99 MARIDIAANGIVPPHTHPRASEVTICLKGALLVGFVDTLGRLFTQQLRPGDSFVFPKGLIHFLYNMD 165 (222)
Q Consensus 99 ~~~v~l~pGg~~~pH~H~~a~Ei~yVl~G~~~~~~v~~~~~~~~~~L~~GDv~viP~G~~H~~~N~g 165 (222)
++...-+|..+.++|||.. -|+.|+++|++.+.+ +|+ ...+++||++++++|.+|.....+
T Consensus 28 ~~~~~~~~~~m~~~HwH~e-~Ei~yv~~G~~~~~i---~g~--~~~l~~Gd~ili~s~~~H~~~~~~ 88 (302)
T PRK10371 28 LEIEFRPPHIMPTSHWHGQ-VEVNVPFDGDVEYLI---NNE--KVQINQGHITLFWACTPHQLTDPG 88 (302)
T ss_pred eEEEeeCCCCCCCCCcccc-EEEEEecCCcEEEEE---CCE--EEEEcCCcEEEEecCCcccccccC
Confidence 3444556778899999995 999999999999888 566 579999999999999999876544
No 31
>PF03079 ARD: ARD/ARD' family; InterPro: IPR004313 The two acireductone dioxygenase enzymes (ARD and ARD', previously known as E-2 and E-2') from Klebsiella pneumoniae share the same amino acid sequence Q9ZFE7 from SWISSPROT, but bind different metal ions: ARD binds Ni2+, ARD' binds Fe2+ []. ARD and ARD' can be experimentally interconverted by removal of the bound metal ion and reconstitution with the appropriate metal ion. The two enzymes share the same substrate, 1,2-dihydroxy-3-keto-5-(methylthio)pentene, but yield different products. ARD' yields the alpha-keto precursor of methionine (and formate), thus forming part of the ubiquitous methionine salvage pathway that converts 5'-methylthioadenosine (MTA) to methionine. This pathway is responsible for the tight control of the concentration of MTA, which is a powerful inhibitor of polyamine biosynthesis and transmethylation reactions []. ARD yields methylthiopropanoate, carbon monoxide and formate, and thus prevents the conversion of MTA to methionine. The role of the ARD catalysed reaction is unclear: methylthiopropanoate is cytotoxic, and carbon monoxide can activate guanylyl cyclase, leading to increased intracellular cGMP levels [, ]. This family also contains other proteins, whose functions are not well characterised.; GO: 0010309 acireductone dioxygenase [iron(II)-requiring] activity, 0055114 oxidation-reduction process; PDB: 1VR3_A 1ZRR_A 2HJI_A.
Probab=98.38 E-value=3.2e-06 Score=68.85 Aligned_cols=67 Identities=22% Similarity=0.227 Sum_probs=49.4
Q ss_pred ccCCccCCCCcEEEEEEeCeEEEEEEecCCcEEEEEECCCCEEEEcCCCeeEEEecCCCCCEEEEEEEe
Q 027536 109 IVPPHTHPRASEVTICLKGALLVGFVDTLGRLFTQQLRPGDSFVFPKGLIHFLYNMDSSKPALALSGLS 177 (222)
Q Consensus 109 ~~~pH~H~~a~Ei~yVl~G~~~~~~v~~~~~~~~~~L~~GDv~viP~G~~H~~~N~g~~~~a~~i~~~~ 177 (222)
....|.|.+ .|+-|+++|++++.+.+.+++.....+++||++++|+|..||.. .|.+...+++=.|.
T Consensus 84 f~~EH~H~d-eEvR~i~~G~g~Fdvr~~~~~wiri~~e~GDli~vP~g~~HrF~-~~~~~~i~aiRlF~ 150 (157)
T PF03079_consen 84 FFEEHTHED-EEVRYIVDGSGYFDVRDGDDVWIRILCEKGDLIVVPAGTYHRFT-LGESPYIKAIRLFK 150 (157)
T ss_dssp HCS-EEESS--EEEEEEECEEEEEEE-TTCEEEEEEEETTCEEEE-TT--EEEE-ESTTSSEEEEEEES
T ss_pred hheeEecCh-heEEEEeCcEEEEEEEcCCCEEEEEEEcCCCEEecCCCCceeEE-cCCCCcEEEEEeec
Confidence 456899996 99999999999999998777766689999999999999999996 44255666654443
No 32
>TIGR02451 anti_sig_ChrR anti-sigma factor, putative, ChrR family. The member of this family from Rhodobacter sphaeroides has been shown both to form a complex with sigma(E) and to negatively regulate tetrapyrrole biosynthesis. This protein likely contains (at least) two distinct functional domains; several smaller homologs (excluded by the model) show homology only to the C-terminal, including a motif PxHxHxGxE.
Probab=98.30 E-value=2.2e-06 Score=73.12 Aligned_cols=72 Identities=25% Similarity=0.268 Sum_probs=61.8
Q ss_pred eEEEEEEEcCCcccCCccCCCCcEEEEEEeCeEEEEEEecCCcEEEEEECCCCEEEEcCCCeeEEEecCCCCCEEEEEEE
Q 027536 97 LTMARIDIAANGIVPPHTHPRASEVTICLKGALLVGFVDTLGRLFTQQLRPGDSFVFPKGLIHFLYNMDSSKPALALSGL 176 (222)
Q Consensus 97 is~~~v~l~pGg~~~pH~H~~a~Ei~yVl~G~~~~~~v~~~~~~~~~~L~~GDv~viP~G~~H~~~N~g~~~~a~~i~~~ 176 (222)
..+..++++||+..+.|.|. +.|+.+||+|++. ++ + ..+.+||++..|.|..|...+.+ ++++.++++.
T Consensus 127 ~~v~Ll~i~pG~~~p~H~H~-G~E~tlVLeG~f~----de-~----g~y~~Gd~i~~p~~~~H~p~a~~-~~~Cicl~v~ 195 (215)
T TIGR02451 127 ARVRLLYIEAGQSIPQHTHK-GFELTLVLHGAFS----DE-T----GVYGVGDFEEADGSVQHQPRTVS-GGDCLCLAVL 195 (215)
T ss_pred cEEEEEEECCCCccCCCcCC-CcEEEEEEEEEEE----cC-C----CccCCCeEEECCCCCCcCcccCC-CCCeEEEEEe
Confidence 46778899999999999997 6999999999953 33 2 47899999999999999999887 8899999887
Q ss_pred eCC
Q 027536 177 SSQ 179 (222)
Q Consensus 177 ~s~ 179 (222)
...
T Consensus 196 dap 198 (215)
T TIGR02451 196 DAP 198 (215)
T ss_pred cCC
Confidence 544
No 33
>PRK15457 ethanolamine utilization protein EutQ; Provisional
Probab=98.28 E-value=1.3e-05 Score=68.74 Aligned_cols=70 Identities=19% Similarity=0.173 Sum_probs=51.5
Q ss_pred ceEEEEEEEcCCcccCCccCCCCcEEEEEEeCeEEEEEEecCCcEEEEEECCCCEEEEcCCCeeEEEecCCCCCEEEEEE
Q 027536 96 GLTMARIDIAANGIVPPHTHPRASEVTICLKGALLVGFVDTLGRLFTQQLRPGDSFVFPKGLIHFLYNMDSSKPALALSG 175 (222)
Q Consensus 96 gis~~~v~l~pGg~~~pH~H~~a~Ei~yVl~G~~~~~~v~~~~~~~~~~L~~GDv~viP~G~~H~~~N~g~~~~a~~i~~ 175 (222)
.|++....+.. +.. +||.+..|+.||++|++++.+ +|+ ++.+++||+++||+|..|.+.+. +.+.++.+
T Consensus 156 ~m~aGf~~~~~-~sf--~wtl~~dEi~YVLEGe~~l~I---dG~--t~~l~pGDvlfIPkGs~~hf~tp---~~aRflyV 224 (233)
T PRK15457 156 SMAAGFMQWEN-AFF--PWTLNYDEIDMVLEGELHVRH---EGE--TMIAKAGDVMFIPKGSSIEFGTP---SSVRFLYV 224 (233)
T ss_pred ceeeEEEEEec-Ccc--ceeccceEEEEEEEeEEEEEE---CCE--EEEeCCCcEEEECCCCeEEecCC---CCeeEEEE
Confidence 46666666654 333 466667999999999999999 566 58999999999999999555433 35555544
Q ss_pred E
Q 027536 176 L 176 (222)
Q Consensus 176 ~ 176 (222)
.
T Consensus 225 ~ 225 (233)
T PRK15457 225 A 225 (233)
T ss_pred E
Confidence 4
No 34
>COG4297 Uncharacterized protein containing double-stranded beta helix domain [Function unknown]
Probab=98.28 E-value=2.5e-06 Score=67.44 Aligned_cols=68 Identities=22% Similarity=0.276 Sum_probs=57.5
Q ss_pred CCcc-cCCccCCCCcEEEEEEeCeEEEEEEecCCcEEEEEECCCCEEEEcCCCeeEEEecCCCCCEEEEEEEe
Q 027536 106 ANGI-VPPHTHPRASEVTICLKGALLVGFVDTLGRLFTQQLRPGDSFVFPKGLIHFLYNMDSSKPALALSGLS 177 (222)
Q Consensus 106 pGg~-~~pH~H~~a~Ei~yVl~G~~~~~~v~~~~~~~~~~L~~GDv~viP~G~~H~~~N~g~~~~a~~i~~~~ 177 (222)
-|++ .-.|||.++.|++.|++|+..+.+..++|. ...+.+||++++|+|.-|.-. .. ..+..++.+|-
T Consensus 51 ~g~Vf~yHHYHs~aHEVl~vlrgqA~l~iGG~~G~--el~v~~GDvlliPAGvGH~rl-~s-S~DF~VvGaYp 119 (163)
T COG4297 51 RGGVFNYHHYHSGAHEVLGVLRGQAGLQIGGADGQ--ELEVGEGDVLLIPAGVGHCRL-HS-SADFQVVGAYP 119 (163)
T ss_pred cccccccccccCCcceEEEEecceeEEEecCCCCc--eeeecCCCEEEEecCcccccc-cC-CCCeEEEcccC
Confidence 4555 457999999999999999999999988887 479999999999999999875 34 67888887773
No 35
>COG1791 Uncharacterized conserved protein, contains double-stranded beta-helix domain [Function unknown]
Probab=98.18 E-value=1.7e-05 Score=64.80 Aligned_cols=71 Identities=20% Similarity=0.325 Sum_probs=57.2
Q ss_pred CCccCCCCcEEEEEEeCeEEEEEEecCCcEEEEEECCCCEEEEcCCCeeEEEecCCCCCEEEEEEEeCCCCCcc
Q 027536 111 PPHTHPRASEVTICLKGALLVGFVDTLGRLFTQQLRPGDSFVFPKGLIHFLYNMDSSKPALALSGLSSQNPGLQ 184 (222)
Q Consensus 111 ~pH~H~~a~Ei~yVl~G~~~~~~v~~~~~~~~~~L~~GDv~viP~G~~H~~~N~g~~~~a~~i~~~~s~~pg~~ 184 (222)
.-|.|.+ .|+-|++.|++.+.+...+|+++...+.+||.+.+|+|.-||.--.. +...+++=.| ...+|-+
T Consensus 89 ~EH~H~d-~EvRy~vaG~GiF~v~~~d~~~~~i~c~~gDLI~vP~gi~HwFtlt~-~~~f~AvRlF-~~~~gWV 159 (181)
T COG1791 89 QEHLHTD-DEVRYFVAGEGIFDVHSPDGKVYQIRCEKGDLISVPPGIYHWFTLTE-SPNFKAVRLF-TEPEGWV 159 (181)
T ss_pred HHhccCC-ceEEEEEecceEEEEECCCCcEEEEEEccCCEEecCCCceEEEEccC-CCcEEEEEEe-eCCCCce
Confidence 4699985 99999999999999999989999999999999999999999996433 4444444334 3555554
No 36
>PRK10296 DNA-binding transcriptional regulator ChbR; Provisional
Probab=98.16 E-value=1.7e-05 Score=69.09 Aligned_cols=52 Identities=25% Similarity=0.332 Sum_probs=44.5
Q ss_pred CcccCCccCCCCcEEEEEEeCeEEEEEEecCCcEEEEEECCCCEEEEcCCCeeEEEec
Q 027536 107 NGIVPPHTHPRASEVTICLKGALLVGFVDTLGRLFTQQLRPGDSFVFPKGLIHFLYNM 164 (222)
Q Consensus 107 Gg~~~pH~H~~a~Ei~yVl~G~~~~~~v~~~~~~~~~~L~~GDv~viP~G~~H~~~N~ 164 (222)
+...++|||. ..|++||++|++++.+ +++ ...+++||++++|+|..|.....
T Consensus 33 ~~~~~~H~H~-~~ei~~v~~G~~~~~i---~~~--~~~l~~g~l~~i~p~~~H~~~~~ 84 (278)
T PRK10296 33 ESVSGLHQHD-YYEFTLVLTGRYYQEI---NGK--RVLLERGDFVFIPLGSHHQSFYE 84 (278)
T ss_pred hcCCCCcccc-cEEEEEEEeceEEEEE---CCE--EEEECCCcEEEeCCCCccceeee
Confidence 3456899998 5999999999999988 566 47999999999999999976544
No 37
>TIGR02272 gentisate_1_2 gentisate 1,2-dioxygenase. This family consists of gentisate 1,2-dioxygenases. This ring-opening enzyme acts in salicylate degradation that goes via gentisate rather than via catechol. It converts gentisate to maleylpyruvate. Some putative gentisate 1,2-dioxygenases are excluded by a relatively high trusted cutoff score because they are too closely related to known examples of 1-hydroxy-2-naphthoate dioxygenase. Therefore some homologs may be bona fide gentisate 1,2-dioxygenases even if they score below the given cutoffs.
Probab=98.11 E-value=1.6e-05 Score=71.97 Aligned_cols=75 Identities=27% Similarity=0.360 Sum_probs=63.4
Q ss_pred ceEEEEEEEcCCcccCCccCCCCcEEEEEEeCeEEEEEEecCCcEEEEEECCCCEEEEcCCCeeEEEecCCCCCEEEEEE
Q 027536 96 GLTMARIDIAANGIVPPHTHPRASEVTICLKGALLVGFVDTLGRLFTQQLRPGDSFVFPKGLIHFLYNMDSSKPALALSG 175 (222)
Q Consensus 96 gis~~~v~l~pGg~~~pH~H~~a~Ei~yVl~G~~~~~~v~~~~~~~~~~L~~GDv~viP~G~~H~~~N~g~~~~a~~i~~ 175 (222)
.|.+..-.+.||...++|.|. +.-+.+|++|++....|+ |+ +..+++||+|++|.+.-|...|.| ++++..+.+
T Consensus 80 tl~a~~q~l~pGe~~~~HRht-~sAl~~vveG~G~~t~V~--g~--~~~~~~gD~~~tP~w~wH~H~n~~-d~~~~wld~ 153 (335)
T TIGR02272 80 SLYAGLQLILPGEVAPSHRHT-QSALRFIVEGKGAFTAVD--GE--RTTMHPGDFIITPSWTWHDHGNPG-DEPMIWLDG 153 (335)
T ss_pred hHHhhhEEeCCCCCCCccccc-cceEEEEEEcCceEEEEC--CE--EEeeeCCCEEEeCCCeeEecccCC-CCcEEEEec
Confidence 455666678999999999998 699999999999655554 55 589999999999999999999998 888777655
Q ss_pred E
Q 027536 176 L 176 (222)
Q Consensus 176 ~ 176 (222)
.
T Consensus 154 l 154 (335)
T TIGR02272 154 L 154 (335)
T ss_pred C
Confidence 4
No 38
>PRK13501 transcriptional activator RhaR; Provisional
Probab=98.11 E-value=1.1e-05 Score=70.82 Aligned_cols=54 Identities=20% Similarity=0.225 Sum_probs=45.8
Q ss_pred CCcccCCccCCCCcEEEEEEeCeEEEEEEecCCcEEEEEECCCCEEEEcCCCeeEEEecC
Q 027536 106 ANGIVPPHTHPRASEVTICLKGALLVGFVDTLGRLFTQQLRPGDSFVFPKGLIHFLYNMD 165 (222)
Q Consensus 106 pGg~~~pH~H~~a~Ei~yVl~G~~~~~~v~~~~~~~~~~L~~GDv~viP~G~~H~~~N~g 165 (222)
+....++|||. -.|++||++|++++.+ +++ .+.+++||+++||+|.+|.+...+
T Consensus 27 ~~~~~~~H~H~-~~ei~~i~~G~~~~~i---~~~--~~~l~~g~~~~I~p~~~H~~~~~~ 80 (290)
T PRK13501 27 PQETFVEHTHQ-FCEIVIVWRGNGLHVL---NDH--PYRITCGDVFYIQAADHHSYESVH 80 (290)
T ss_pred CCCCCcccccc-ceeEEEEecCceEEEE---CCe--eeeecCCeEEEEcCCCcccccccC
Confidence 33446799998 5999999999999998 565 589999999999999999987443
No 39
>PF06339 Ectoine_synth: Ectoine synthase; InterPro: IPR010462 This family consists of several bacterial ectoine synthase proteins. The ectABC genes encode the diaminobutyric acid acetyltransferase (EctA), the diaminobutyric acid aminotransferase (EctB), and the ectoine synthase (EctC). Together these proteins constitute the ectoine biosynthetic pathway [].; GO: 0016836 hydro-lyase activity, 0006596 polyamine biosynthetic process
Probab=98.05 E-value=6.6e-05 Score=58.53 Aligned_cols=84 Identities=21% Similarity=0.320 Sum_probs=72.5
Q ss_pred cccceEEEEEEEcCCcccCCccCCCCcEEEEEEeCeEEEEEEecCCcEEEEEECCCCEEEEcCCCeeEEEecCCCCCEEE
Q 027536 93 NTMGLTMARIDIAANGIVPPHTHPRASEVTICLKGALLVGFVDTLGRLFTQQLRPGDSFVFPKGLIHFLYNMDSSKPALA 172 (222)
Q Consensus 93 ~~lgis~~~v~l~pGg~~~pH~H~~a~Ei~yVl~G~~~~~~v~~~~~~~~~~L~~GDv~viP~G~~H~~~N~g~~~~a~~ 172 (222)
.+.|.|+....+.+|.....||-.. -|-+|+++|++++...+. |+ .+.++||.+....+...|+.+. .+++.+
T Consensus 31 DgmGFS~h~T~i~aGtet~~~YknH-lEAvyci~G~Gev~~~~~-G~--~~~i~pGt~YaLd~hD~H~lra---~~dm~~ 103 (126)
T PF06339_consen 31 DGMGFSFHETTIYAGTETHIHYKNH-LEAVYCIEGEGEVEDLDT-GE--VHPIKPGTMYALDKHDRHYLRA---KTDMRL 103 (126)
T ss_pred CCCCEEEEEEEEeCCCeeEEEecCc-eEEEEEEeceEEEEEccC-Cc--EEEcCCCeEEecCCCccEEEEe---cCCEEE
Confidence 3568999999999999999999775 999999999999998764 76 4899999999999999999973 459999
Q ss_pred EEEEeCCCCCc
Q 027536 173 LSGLSSQNPGL 183 (222)
Q Consensus 173 i~~~~s~~pg~ 183 (222)
+|+||.+--|.
T Consensus 104 vCVFnPpltG~ 114 (126)
T PF06339_consen 104 VCVFNPPLTGR 114 (126)
T ss_pred EEEcCCCCcCc
Confidence 99998654443
No 40
>PRK13500 transcriptional activator RhaR; Provisional
Probab=98.04 E-value=2.4e-05 Score=69.74 Aligned_cols=54 Identities=22% Similarity=0.294 Sum_probs=46.0
Q ss_pred CCcccCCccCCCCcEEEEEEeCeEEEEEEecCCcEEEEEECCCCEEEEcCCCeeEEEecC
Q 027536 106 ANGIVPPHTHPRASEVTICLKGALLVGFVDTLGRLFTQQLRPGDSFVFPKGLIHFLYNMD 165 (222)
Q Consensus 106 pGg~~~pH~H~~a~Ei~yVl~G~~~~~~v~~~~~~~~~~L~~GDv~viP~G~~H~~~N~g 165 (222)
|....++|||+ ..|++||++|++...+ +++ .+.+++||+++||+|..|......
T Consensus 57 ~~~~~~~H~H~-~~el~~v~~G~g~~~v---~~~--~~~l~~Gdl~~I~~~~~H~~~~~~ 110 (312)
T PRK13500 57 PQDVFAEHTHD-FCELVIVWRGNGLHVL---NDR--PYRITRGDLFYIHADDKHSYASVN 110 (312)
T ss_pred CCCCCCccccc-eEEEEEEEcCeEEEEE---CCE--EEeecCCeEEEECCCCeecccccC
Confidence 33456899998 5999999999999888 565 589999999999999999987543
No 41
>TIGR02297 HpaA 4-hydroxyphenylacetate catabolism regulatory protein HpaA. This putative transcriptional regulator, which contains both the substrate-binding, dimerization domain (pfam02311) and the helix-turn-helix DNA-binding domain (pfam00165) of the AraC famil, is located proximal to genes of the 4-hydroxyphenylacetate catabolism pathway.
Probab=98.02 E-value=1.8e-05 Score=68.91 Aligned_cols=54 Identities=15% Similarity=0.109 Sum_probs=46.1
Q ss_pred CcccCCccCCCCcEEEEEEeCeEEEEEEecCCcEEEEEECCCCEEEEcCCCeeEEEecC
Q 027536 107 NGIVPPHTHPRASEVTICLKGALLVGFVDTLGRLFTQQLRPGDSFVFPKGLIHFLYNMD 165 (222)
Q Consensus 107 Gg~~~pH~H~~a~Ei~yVl~G~~~~~~v~~~~~~~~~~L~~GDv~viP~G~~H~~~N~g 165 (222)
+...++|||.+--|++|+++|++.+.+ +++ ...+++||++++|+|..|.....+
T Consensus 33 ~~~~~~H~H~~~~~l~~~~~G~~~~~~---~~~--~~~l~~g~~~ii~~~~~H~~~~~~ 86 (287)
T TIGR02297 33 GRNMPVHFHDRYYQLHYLTEGSIALQL---DEH--EYSEYAPCFFLTPPSVPHGFVTDL 86 (287)
T ss_pred CCCCCCcccccceeEEEEeeCceEEEE---CCE--EEEecCCeEEEeCCCCccccccCC
Confidence 456889999755899999999999887 455 579999999999999999987544
No 42
>PF05523 FdtA: WxcM-like, C-terminal ; InterPro: IPR008894 This entry includes FdtA (Q6T1W8 from SWISSPROT) from Aneurinibacillus thermoaerophilus, which has been characterised as a dTDP-6-deoxy-3,4-keto-hexulose isomerase []. It also includes WxcM (Q93S92 from SWISSPROT) from Xanthomonas campestris pv campestris) []. ; PDB: 2PAK_A 2PAE_A 2PA7_B 2PAM_A.
Probab=97.92 E-value=0.00019 Score=56.64 Aligned_cols=96 Identities=18% Similarity=0.206 Sum_probs=53.6
Q ss_pred CcEEEEeccCC-CCCccccceEEEEEEEcCCcccCCccCCCCcEEEEEEeCeEEEEEEecCCcEEEEEECCCC-EEEEcC
Q 027536 78 GFNATLTNTKN-LPGVNTMGLTMARIDIAANGIVPPHTHPRASEVTICLKGALLVGFVDTLGRLFTQQLRPGD-SFVFPK 155 (222)
Q Consensus 78 g~~v~~~~~~~-fP~l~~lgis~~~v~l~pGg~~~pH~H~~a~Ei~yVl~G~~~~~~v~~~~~~~~~~L~~GD-v~viP~ 155 (222)
.|.++.+...+ .| ..- +=-+.....++|....+|+|....|+++|++|++.+.+-+..++ ....|...+ .+.||+
T Consensus 15 RG~L~~~e~~~~ip-f~i-~rvy~i~~~~~~~~RG~H~Hk~~~~~~~~l~Gs~~v~~~d~~~~-~~~~L~~~~~~L~Ipp 91 (131)
T PF05523_consen 15 RGSLSVIERFDDIP-FEI-KRVYYIYNVPPGVIRGWHAHKKTTQWFIVLSGSFKVVLDDGREE-EEFILDEPNKGLYIPP 91 (131)
T ss_dssp TEEEEEEETTTSSS-S----EEEEEES--SS--EEEEEESS--EEEEEEES-EEEEEE-SS-E-EEEEE--TTEEEEE-T
T ss_pred CCcEEEEeccCCCC-CCc-cEEEEEEcCCCCCcccccccccccEEEEEEeCEEEEEEecCCCc-EEEEECCCCeEEEECC
Confidence 56677766543 33 221 11112223455556999999999999999999999998664333 467777765 899999
Q ss_pred CCeeEEEecCCCCCEEEEEEEeCC
Q 027536 156 GLIHFLYNMDSSKPALALSGLSSQ 179 (222)
Q Consensus 156 G~~H~~~N~g~~~~a~~i~~~~s~ 179 (222)
|..|.+.|.+ .+ +++++ +.+.
T Consensus 92 g~w~~~~~~s-~~-svlLv-~as~ 112 (131)
T PF05523_consen 92 GVWHGIKNFS-ED-SVLLV-LASE 112 (131)
T ss_dssp T-EEEEE----TT--EEEE-EESS
T ss_pred chhhHhhccC-CC-cEEEE-EcCC
Confidence 9999999987 55 66654 6655
No 43
>PF14499 DUF4437: Domain of unknown function (DUF4437); PDB: 2QDR_A.
Probab=97.90 E-value=1.7e-05 Score=69.08 Aligned_cols=71 Identities=24% Similarity=0.255 Sum_probs=45.3
Q ss_pred ceEEEEEEEcCCcccCCccCCCCcEEEEEEeCeEEEEEEecCCcEEEEEECCCCEEEEcCCCeeEEEecCCCCCEEE
Q 027536 96 GLTMARIDIAANGIVPPHTHPRASEVTICLKGALLVGFVDTLGRLFTQQLRPGDSFVFPKGLIHFLYNMDSSKPALA 172 (222)
Q Consensus 96 gis~~~v~l~pGg~~~pH~H~~a~Ei~yVl~G~~~~~~v~~~~~~~~~~L~~GDv~viP~G~~H~~~N~g~~~~a~~ 172 (222)
|.+..|+++++|-..|||+|+ +++-+|||+|++..+ +.+....-|.+|..+..|+|..|.....+ .+.+.+
T Consensus 35 g~~~~~vkf~~g~~~pph~H~-~~~~~~Vi~G~~~~~----~~~a~~~~l~~Gsy~~~PaG~~h~~~~~~-~~~~~~ 105 (251)
T PF14499_consen 35 GPSGMRVKFPAGFSSPPHIHN-ADYRGTVISGELHNG----DPKAAAMWLPAGSYWFQPAGEPHITAAEG-ETNLLF 105 (251)
T ss_dssp S-EEEEEEE-TT-EE--BEES-S-EEEEEEESEEEET----TEE-----E-TTEEEEE-TT-EEEETTS--EE-EEE
T ss_pred CcceEEEEcCCCccCCCccee-eeEEEEEEEeEEEcC----CCcccceecCCCceEeccCCCceeeeccC-ccEEEE
Confidence 789999999999999999998 799999999987753 23333467999999999999999986554 433433
No 44
>PRK13503 transcriptional activator RhaS; Provisional
Probab=97.89 E-value=4.4e-05 Score=66.07 Aligned_cols=53 Identities=21% Similarity=0.257 Sum_probs=45.1
Q ss_pred CCcccCCccCCCCcEEEEEEeCeEEEEEEecCCcEEEEEECCCCEEEEcCCCeeEEEec
Q 027536 106 ANGIVPPHTHPRASEVTICLKGALLVGFVDTLGRLFTQQLRPGDSFVFPKGLIHFLYNM 164 (222)
Q Consensus 106 pGg~~~pH~H~~a~Ei~yVl~G~~~~~~v~~~~~~~~~~L~~GDv~viP~G~~H~~~N~ 164 (222)
+....++|||. ..|++||++|++++.+ +++ ...+++||++++|+|..|.....
T Consensus 24 ~~~~~~~H~H~-~~ei~~v~~G~~~~~i---~~~--~~~l~~g~~~~i~~~~~h~~~~~ 76 (278)
T PRK13503 24 PQAAFPEHHHD-FHEIVIVEHGTGIHVF---NGQ--PYTLSGGTVCFVRDHDRHLYEHT 76 (278)
T ss_pred ccccccccccC-ceeEEEEecCceeeEe---cCC--cccccCCcEEEECCCccchhhhc
Confidence 44557899998 5999999999999988 455 57999999999999999987643
No 45
>PRK13502 transcriptional activator RhaR; Provisional
Probab=97.89 E-value=5.9e-05 Score=65.67 Aligned_cols=55 Identities=20% Similarity=0.260 Sum_probs=46.5
Q ss_pred cCCcccCCccCCCCcEEEEEEeCeEEEEEEecCCcEEEEEECCCCEEEEcCCCeeEEEecC
Q 027536 105 AANGIVPPHTHPRASEVTICLKGALLVGFVDTLGRLFTQQLRPGDSFVFPKGLIHFLYNMD 165 (222)
Q Consensus 105 ~pGg~~~pH~H~~a~Ei~yVl~G~~~~~~v~~~~~~~~~~L~~GDv~viP~G~~H~~~N~g 165 (222)
.|+-..++|||. ..|++||++|++++.+ +++ ...+++||++++|+|.+|.....+
T Consensus 26 ~~~~~~~~H~h~-~~~l~~v~~G~~~~~i---~~~--~~~l~~g~l~li~~~~~H~~~~~~ 80 (282)
T PRK13502 26 YPQDVFAEHTHE-FCELVMVWRGNGLHVL---NER--PYRITRGDLFYIRAEDKHSYTSVN 80 (282)
T ss_pred CCCCCCCccccc-eEEEEEEecCcEEEEE---CCE--EEeecCCcEEEECCCCcccccccC
Confidence 445557899998 6999999999999988 566 589999999999999999886433
No 46
>KOG2107 consensus Uncharacterized conserved protein, contains double-stranded beta-helix domain [Function unknown]
Probab=97.86 E-value=2.8e-05 Score=63.25 Aligned_cols=54 Identities=22% Similarity=0.345 Sum_probs=49.3
Q ss_pred ccCCccCCCCcEEEEEEeCeEEEEEEecCCcEEEEEECCCCEEEEcCCCeeEEEe
Q 027536 109 IVPPHTHPRASEVTICLKGALLVGFVDTLGRLFTQQLRPGDSFVFPKGLIHFLYN 163 (222)
Q Consensus 109 ~~~pH~H~~a~Ei~yVl~G~~~~~~v~~~~~~~~~~L~~GDv~viP~G~~H~~~N 163 (222)
....|.|.+ +||-|+++|++++-+-+.+++-+..-+++||++++|+|.-|..--
T Consensus 85 FfEEhlh~d-eeiR~il~GtgYfDVrd~dd~WIRi~vekGDlivlPaGiyHRFTt 138 (179)
T KOG2107|consen 85 FFEEHLHED-EEIRYILEGTGYFDVRDKDDQWIRIFVEKGDLIVLPAGIYHRFTT 138 (179)
T ss_pred HHHHhcCch-hheEEEeecceEEeeccCCCCEEEEEEecCCEEEecCcceeeeec
Confidence 357899997 999999999999999988888888999999999999999999853
No 47
>PF06052 3-HAO: 3-hydroxyanthranilic acid dioxygenase; InterPro: IPR010329 Members of this protein family, from both bacteria and eukaryotes, are the enzyme 3-hydroxyanthranilate 3,4-dioxygenase (1.13.11.6 from EC). It is part of the kynurenine pathway for the degradation of tryptophan and the biosynthesis of nicotinic acid [].The prokaryotic homologue is involved in the 2-nitrobenzoate degradation pathway []. The enzyme acts on the tryptophan metabolite 3-hydroxyanthranilate and produces 2-amino-3-carboxymuconate semialdehyde, which can rearrange spontaneously to quinolinic acid and feed into nicotinamide biosynthesis, or undergo further enzymatic degradation.; GO: 0000334 3-hydroxyanthranilate 3,4-dioxygenase activity, 0005506 iron ion binding, 0008152 metabolic process, 0055114 oxidation-reduction process; PDB: 1ZVF_A 1YFX_A 1YFW_A 1YFY_A 1YFU_A 2QNK_A 3FE5_A.
Probab=97.82 E-value=0.0002 Score=57.55 Aligned_cols=78 Identities=19% Similarity=0.254 Sum_probs=50.4
Q ss_pred EEEEEcCCcccCCccCCCCcEEEEEEeCeEEEEEEecCCcEEEEEECCCCEEEEcCCCeeEEEecCCCCCEEEEEEEeCC
Q 027536 100 ARIDIAANGIVPPHTHPRASEVTICLKGALLVGFVDTLGRLFTQQLRPGDSFVFPKGLIHFLYNMDSSKPALALSGLSSQ 179 (222)
Q Consensus 100 ~~v~l~pGg~~~pH~H~~a~Ei~yVl~G~~~~~~v~~~~~~~~~~L~~GDv~viP~G~~H~~~N~g~~~~a~~i~~~~s~ 179 (222)
..+.-.|+...-.|..+ ++|++|-++|...+.+++. |+.....+++||+|..|++.+|.-.-. ++...+++-...
T Consensus 36 VmvVGGPN~R~DyHine-~eE~FyQ~kG~m~Lkv~e~-g~~kdi~I~EGe~fLLP~~vpHsP~R~---~~tiGLViEr~R 110 (151)
T PF06052_consen 36 VMVVGGPNQRTDYHINE-TEEFFYQLKGDMCLKVVED-GKFKDIPIREGEMFLLPANVPHSPQRP---ADTIGLVIERKR 110 (151)
T ss_dssp EEEEESSB--SSEEE-S-S-EEEEEEES-EEEEEEET-TEEEEEEE-TTEEEEE-TT--EEEEE----TT-EEEEEEE--
T ss_pred EEEEcCCCCCCccccCC-cceEEEEEeCcEEEEEEeC-CceEEEEeCCCcEEecCCCCCCCCcCC---CCcEEEEEEecc
Confidence 44556777778889998 6999999999999999985 777789999999999999999998753 344444444333
Q ss_pred CCC
Q 027536 180 NPG 182 (222)
Q Consensus 180 ~pg 182 (222)
.++
T Consensus 111 ~~~ 113 (151)
T PF06052_consen 111 PEG 113 (151)
T ss_dssp -TT
T ss_pred CCC
Confidence 333
No 48
>PF05899 Cupin_3: Protein of unknown function (DUF861); InterPro: IPR008579 The function of the proteins in this entry are unknown. They contain the conserved barrel domain of the 'cupin' superfamily and members are specific to plants and bacteria.; PDB: 1RC6_A 3MYX_A 1O5U_A 2K9Z_A 1LKN_A 3ES4_A 1SFN_B 3BCW_A.
Probab=97.78 E-value=8.2e-05 Score=52.90 Aligned_cols=59 Identities=20% Similarity=0.287 Sum_probs=43.8
Q ss_pred eEEEEEEEcCCcccCCccCCCCcEEEEEEeCeEEEEEEecCCcEEEEEECCCCEEEEcCCCeeEEE
Q 027536 97 LTMARIDIAANGIVPPHTHPRASEVTICLKGALLVGFVDTLGRLFTQQLRPGDSFVFPKGLIHFLY 162 (222)
Q Consensus 97 is~~~v~l~pGg~~~pH~H~~a~Ei~yVl~G~~~~~~v~~~~~~~~~~L~~GDv~viP~G~~H~~~ 162 (222)
++.....-.||. ...++. ..|++|||+|++++.. .+|+ +.++++||++++|+|..-.+.
T Consensus 7 ~~~g~w~~~pg~-~~~~~~--~~E~~~vleG~v~it~--~~G~--~~~~~aGD~~~~p~G~~~~w~ 65 (74)
T PF05899_consen 7 FSAGVWECTPGK-FPWPYP--EDEFFYVLEGEVTITD--EDGE--TVTFKAGDAFFLPKGWTGTWE 65 (74)
T ss_dssp EEEEEEEEECEE-EEEEES--SEEEEEEEEEEEEEEE--TTTE--EEEEETTEEEEE-TTEEEEEE
T ss_pred EEEEEEEECCce-eEeeCC--CCEEEEEEEeEEEEEE--CCCC--EEEEcCCcEEEECCCCEEEEE
Confidence 456666777865 334444 3999999999999876 3465 589999999999999876554
No 49
>COG3257 GlxB Uncharacterized protein, possibly involved in glyoxylate utilization [General function prediction only]
Probab=97.75 E-value=0.00028 Score=60.06 Aligned_cols=74 Identities=20% Similarity=0.200 Sum_probs=63.0
Q ss_pred EEEEEEEcCCc-ccCCccCCCCcEEEEEEeCeEEEEEEecCCcEEEEEECCCCEEEEcCCCeeEEEecCCCCCEEEEEEE
Q 027536 98 TMARIDIAANG-IVPPHTHPRASEVTICLKGALLVGFVDTLGRLFTQQLRPGDSFVFPKGLIHFLYNMDSSKPALALSGL 176 (222)
Q Consensus 98 s~~~v~l~pGg-~~~pH~H~~a~Ei~yVl~G~~~~~~v~~~~~~~~~~L~~GDv~viP~G~~H~~~N~g~~~~a~~i~~~ 176 (222)
+-..+++.|+| .-.+-.-++++-++||++|++.+.+ .|+ +..|++|+..++|+|..|...|.. .+++.+..+-
T Consensus 62 ~qyive~~p~GGs~~~e~d~~ae~~lfVv~Ge~tv~~---~G~--th~l~eggyaylPpgs~~~~~N~~-~~~~rfhw~r 135 (264)
T COG3257 62 VQYIVELHPNGGSQRPEGDEGAETFLFVVSGEITVKA---EGK--THALREGGYAYLPPGSGWTLRNAQ-KEDSRFHWIR 135 (264)
T ss_pred hhheEEECCCCCCCCCCCCCcceEEEEEEeeeEEEEE---cCe--EEEeccCCeEEeCCCCcceEeecc-CCceEEEEEe
Confidence 34457887766 6777778889999999999999998 566 689999999999999999999998 9999987765
Q ss_pred e
Q 027536 177 S 177 (222)
Q Consensus 177 ~ 177 (222)
.
T Consensus 136 k 136 (264)
T COG3257 136 K 136 (264)
T ss_pred e
Confidence 3
No 50
>COG3435 Gentisate 1,2-dioxygenase [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=97.68 E-value=8.8e-05 Score=65.80 Aligned_cols=90 Identities=23% Similarity=0.290 Sum_probs=72.3
Q ss_pred EEeccCCCCCccccc-----eEEEEEEEcCCcccCCccCCCCcEEEEEEeCeEEEEEEecCCcEEEEEECCCCEEEEcCC
Q 027536 82 TLTNTKNLPGVNTMG-----LTMARIDIAANGIVPPHTHPRASEVTICLKGALLVGFVDTLGRLFTQQLRPGDSFVFPKG 156 (222)
Q Consensus 82 ~~~~~~~fP~l~~lg-----is~~~v~l~pGg~~~pH~H~~a~Ei~yVl~G~~~~~~v~~~~~~~~~~L~~GDv~viP~G 156 (222)
..+-.-+-|+|++.. +.+..--+.||...|.|.|. .+-+-+|++|++-+..|+ |+ ...+++||.++.|++
T Consensus 72 RRvi~L~NP~l~g~ssiT~TLyAglQlilPGEvApsHrHs-qsAlRFvveG~Ga~T~Vd--Ge--r~~M~~GDfilTP~w 146 (351)
T COG3435 72 RRVIYLENPGLRGRSSITPTLYAGLQLILPGEVAPSHRHN-QSALRFVVEGKGAYTVVD--GE--RTPMEAGDFILTPAW 146 (351)
T ss_pred eEEEEecCCCCCCcccccHHHHhhhheecCcccCCccccc-ccceEEEEeccceeEeec--Cc--eeeccCCCEEEccCc
Confidence 333444567777653 22333457899999999998 699999999999999886 43 379999999999999
Q ss_pred CeeEEEecCCCCCEEEEEEEe
Q 027536 157 LIHFLYNMDSSKPALALSGLS 177 (222)
Q Consensus 157 ~~H~~~N~g~~~~a~~i~~~~ 177 (222)
.-|-.-|.| .+|+.++-.+.
T Consensus 147 ~wHdHgn~g-~eP~iWlDgLD 166 (351)
T COG3435 147 TWHDHGNEG-TEPCIWLDGLD 166 (351)
T ss_pred eeccCCCCC-CCceEEEcccc
Confidence 999999999 99999987763
No 51
>TIGR02272 gentisate_1_2 gentisate 1,2-dioxygenase. This family consists of gentisate 1,2-dioxygenases. This ring-opening enzyme acts in salicylate degradation that goes via gentisate rather than via catechol. It converts gentisate to maleylpyruvate. Some putative gentisate 1,2-dioxygenases are excluded by a relatively high trusted cutoff score because they are too closely related to known examples of 1-hydroxy-2-naphthoate dioxygenase. Therefore some homologs may be bona fide gentisate 1,2-dioxygenases even if they score below the given cutoffs.
Probab=97.55 E-value=0.00046 Score=62.62 Aligned_cols=84 Identities=15% Similarity=0.064 Sum_probs=60.5
Q ss_pred cEEEEeccCCCC-CccccceEEEEEEEcCCcccCCccCCCCcEEEEEEeCeEEEEEEecCCcEEEEEECCCCEEEEcCCC
Q 027536 79 FNATLTNTKNLP-GVNTMGLTMARIDIAANGIVPPHTHPRASEVTICLKGALLVGFVDTLGRLFTQQLRPGDSFVFPKGL 157 (222)
Q Consensus 79 ~~v~~~~~~~fP-~l~~lgis~~~v~l~pGg~~~pH~H~~a~Ei~yVl~G~~~~~~v~~~~~~~~~~L~~GDv~viP~G~ 157 (222)
-.+...|..+=+ ...+++.. .-.+++|....+|.|. .+.+++|++|+++..+ +++ +...++||+|++|.-.
T Consensus 233 ~~l~y~NP~TG~~~~pti~~~--~q~L~~G~~t~~~r~T-~s~Vf~VieG~G~s~i---g~~--~~~W~~gD~f~vPsW~ 304 (335)
T TIGR02272 233 LKLRYVNPATGGYPMPTIGAF--IQLLPKGFRTATYRST-DATVFCVVEGRGQVRI---GDA--VFRFSPKDVFVVPSWH 304 (335)
T ss_pred EEEEEeCCCCCCCcchhHHHH--HhccCCCCCCCCcccc-ccEEEEEEeCeEEEEE---CCE--EEEecCCCEEEECCCC
Confidence 344455543333 23444443 3467888899999998 5999999999999998 454 5799999999999998
Q ss_pred eeEEEecCCCCCEEEE
Q 027536 158 IHFLYNMDSSKPALAL 173 (222)
Q Consensus 158 ~H~~~N~g~~~~a~~i 173 (222)
.|...| ++++.++
T Consensus 305 ~~~h~a---~~da~Lf 317 (335)
T TIGR02272 305 PVRFEA---SDDAVLF 317 (335)
T ss_pred cEeccc---CCCeEEE
Confidence 887655 3455544
No 52
>PF06249 EutQ: Ethanolamine utilisation protein EutQ; InterPro: IPR010424 The eut operon of Salmonella typhimurium encodes proteins involved in the cobalamin-dependent degradation of ethanolamine. The role of EutQ in this process is unclear [].; PDB: 2PYT_B 3LWC_A.
Probab=97.48 E-value=0.0004 Score=56.18 Aligned_cols=59 Identities=22% Similarity=0.329 Sum_probs=43.0
Q ss_pred ceEEEEEEEcCCcccCCccCCCCcEEEEEEeCeEEEEEEecCCcEEEEEECCCCEEEEcCCCeeEEE
Q 027536 96 GLTMARIDIAANGIVPPHTHPRASEVTICLKGALLVGFVDTLGRLFTQQLRPGDSFVFPKGLIHFLY 162 (222)
Q Consensus 96 gis~~~v~l~pGg~~~pH~H~~a~Ei~yVl~G~~~~~~v~~~~~~~~~~L~~GDv~viP~G~~H~~~ 162 (222)
.|++..++++.. +.-|.-.-.|+.||++|++.+.. +|+ +...++||+++||+|.--.+.
T Consensus 76 ~l~~Gf~~le~~---~f~wtl~YDEi~~VlEG~L~i~~---~G~--~~~A~~GDvi~iPkGs~I~fs 134 (152)
T PF06249_consen 76 RLSAGFMELEKT---SFPWTLTYDEIKYVLEGTLEISI---DGQ--TVTAKPGDVIFIPKGSTITFS 134 (152)
T ss_dssp SSEEEEEEEEEE---EEEEE-SSEEEEEEEEEEEEEEE---TTE--EEEEETT-EEEE-TT-EEEEE
T ss_pred ceeeEEEEEeCC---CccEEeecceEEEEEEeEEEEEE---CCE--EEEEcCCcEEEECCCCEEEEe
Confidence 466666666653 34577767999999999999875 577 579999999999999876664
No 53
>COG1898 RfbC dTDP-4-dehydrorhamnose 3,5-epimerase and related enzymes [Cell envelope biogenesis, outer membrane]
Probab=97.21 E-value=0.0031 Score=52.17 Aligned_cols=66 Identities=14% Similarity=0.206 Sum_probs=55.4
Q ss_pred CCcccCCccCCCC-cEEEEEEeCeEEEEEEecC------CcEEEEEECCC--CEEEEcCCCeeEEEecCCCCCEEE
Q 027536 106 ANGIVPPHTHPRA-SEVTICLKGALLVGFVDTL------GRLFTQQLRPG--DSFVFPKGLIHFLYNMDSSKPALA 172 (222)
Q Consensus 106 pGg~~~pH~H~~a-~Ei~yVl~G~~~~~~v~~~------~~~~~~~L~~G--Dv~viP~G~~H~~~N~g~~~~a~~ 172 (222)
+|-+..+|||..- .+++.|++|++....+|-. |+.....+.+- ..+.||+|..|-..|.+ ++...+
T Consensus 54 ~GvlRGlHyq~~~q~klv~~v~G~v~dv~vDlR~~SpTyg~~~~~~ls~~N~~~l~IP~G~AHGf~~L~-d~~~~~ 128 (173)
T COG1898 54 PGVLRGLHYQHKPQGKLVRVVSGKVFDVAVDLRKDSPTYGKWVGVVLSAENKRQLYIPPGFAHGFQVLS-DDAEVV 128 (173)
T ss_pred CCeeEEEEcccCCCCeEEEEecCeEEEEEEEccCCCCCcceEEEEEecCCCceEEEeCCcccceeEEcc-CceEEE
Confidence 8999999999987 8999999999999998742 46666777766 89999999999999998 666333
No 54
>COG4766 EutQ Ethanolamine utilization protein [Amino acid transport and metabolism]
Probab=97.06 E-value=0.0042 Score=50.18 Aligned_cols=62 Identities=24% Similarity=0.274 Sum_probs=47.2
Q ss_pred ceEEEEEEEcCCcccCCccCCCCcEEEEEEeCeEEEEEEecCCcEEEEEECCCCEEEEcCCCeeEEEecC
Q 027536 96 GLTMARIDIAANGIVPPHTHPRASEVTICLKGALLVGFVDTLGRLFTQQLRPGDSFVFPKGLIHFLYNMD 165 (222)
Q Consensus 96 gis~~~v~l~pGg~~~pH~H~~a~Ei~yVl~G~~~~~~v~~~~~~~~~~L~~GDv~viP~G~~H~~~N~g 165 (222)
.+++...++++ ...+|- -+-+|+-||++|++.+.. +|+ +..-++||+++||+|.---+--.|
T Consensus 99 ~l~aG~m~~~~-~tf~wt--l~yDe~d~VlEGrL~V~~---~g~--tv~a~aGDvifiPKgssIefst~g 160 (176)
T COG4766 99 RLGAGLMEMKN-TTFPWT--LNYDEIDYVLEGRLHVRI---DGR--TVIAGAGDVIFIPKGSSIEFSTTG 160 (176)
T ss_pred ccccceeeecc-ccCcce--ecccceeEEEeeeEEEEE---cCC--eEecCCCcEEEecCCCeEEEeccc
Confidence 45666666766 445444 446899999999999987 565 478999999999999887775444
No 55
>COG3450 Predicted enzyme of the cupin superfamily [General function prediction only]
Probab=97.02 E-value=0.0014 Score=50.68 Aligned_cols=59 Identities=24% Similarity=0.277 Sum_probs=44.1
Q ss_pred eEEEEEEEcCCcccCCccCCCCcEEEEEEeCeEEEEEEecCCcEEEEEECCCCEEEEcCCCeeEEE
Q 027536 97 LTMARIDIAANGIVPPHTHPRASEVTICLKGALLVGFVDTLGRLFTQQLRPGDSFVFPKGLIHFLY 162 (222)
Q Consensus 97 is~~~v~l~pGg~~~pH~H~~a~Ei~yVl~G~~~~~~v~~~~~~~~~~L~~GDv~viP~G~~H~~~ 162 (222)
+......-.||. +|++-...|+.|+|+|++++.- ++|+ ...+++||+++||+|..=.+.
T Consensus 45 ~~~GiWe~TpG~---~r~~y~~~E~chil~G~v~~T~--d~Ge--~v~~~aGD~~~~~~G~~g~W~ 103 (116)
T COG3450 45 VETGIWECTPGK---FRVTYDEDEFCHILEGRVEVTP--DGGE--PVEVRAGDSFVFPAGFKGTWE 103 (116)
T ss_pred eeEeEEEecCcc---ceEEcccceEEEEEeeEEEEEC--CCCe--EEEEcCCCEEEECCCCeEEEE
Confidence 444555555554 4666667999999999999764 3366 589999999999999876554
No 56
>TIGR01221 rmlC dTDP-4-dehydrorhamnose 3,5-epimerase. This enzyme participates in the biosynthesis of dTDP-L-rhamnose, often as a precursor to LPS O-antigen
Probab=96.83 E-value=0.021 Score=47.30 Aligned_cols=63 Identities=16% Similarity=0.202 Sum_probs=53.4
Q ss_pred cCCcccCCccCC--CCcEEEEEEeCeEEEEEEecC------CcEEEEEECC--CCEEEEcCCCeeEEEecCCCC
Q 027536 105 AANGIVPPHTHP--RASEVTICLKGALLVGFVDTL------GRLFTQQLRP--GDSFVFPKGLIHFLYNMDSSK 168 (222)
Q Consensus 105 ~pGg~~~pH~H~--~a~Ei~yVl~G~~~~~~v~~~------~~~~~~~L~~--GDv~viP~G~~H~~~N~g~~~ 168 (222)
.+|.+..+|+|. ....++.|++|++..-++|-- |+.....|.+ +..++||+|..|-..+.+ ++
T Consensus 52 ~~gvlRGlH~q~~~~q~Klv~c~~G~i~dV~VDlR~~SpTfG~~~~~~L~~~~~~~l~IP~G~aHGF~~L~-d~ 124 (176)
T TIGR01221 52 YKGVLRGLHYQRPHPQGKLVRVLRGEVFDVAVDLRRNSPTFGKWVGVLLSAENKRQLWIPEGFAHGFVVLS-DE 124 (176)
T ss_pred cCCEEEEEEECCCCCCceEEEEccCCEEEEEEECCCCcCCCCeEEEEEECCCCCCEEEeCCcceeEEEEcC-CC
Confidence 568889999984 369999999999999999842 6777788888 569999999999999887 55
No 57
>PF05995 CDO_I: Cysteine dioxygenase type I; InterPro: IPR010300 Cysteine dioxygenase type I (1.13.11.20 from EC) converts cysteine to cysteinesulphinic acid and is the rate-limiting step in sulphate production.; GO: 0005506 iron ion binding, 0017172 cysteine dioxygenase activity, 0046439 L-cysteine metabolic process, 0055114 oxidation-reduction process; PDB: 2IC1_A 3EQE_B 3ELN_A 2B5H_A 2GH2_A 2Q4S_A 2ATF_A 2GM6_A 3USS_B.
Probab=96.74 E-value=0.033 Score=45.95 Aligned_cols=83 Identities=19% Similarity=0.137 Sum_probs=57.4
Q ss_pred ceEEEEEEEcCCcccCCccCCCCcEEEEEEeCeEEEEEEecCCc--------EEEEEECCCCEEEEcCCCeeEEEecCCC
Q 027536 96 GLTMARIDIAANGIVPPHTHPRASEVTICLKGALLVGFVDTLGR--------LFTQQLRPGDSFVFPKGLIHFLYNMDSS 167 (222)
Q Consensus 96 gis~~~v~l~pGg~~~pH~H~~a~Ei~yVl~G~~~~~~v~~~~~--------~~~~~L~~GDv~viP~G~~H~~~N~g~~ 167 (222)
.+.+..+.-.||...+.|=|..+.=++.|++|+++-......+. .....+..|...+++++.+|.+.|.+.+
T Consensus 74 ~~el~ll~W~pGq~S~IHDH~~s~g~~~vl~G~l~e~~y~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~iH~v~n~s~~ 153 (175)
T PF05995_consen 74 RFELWLLCWPPGQRSPIHDHGGSWGWVKVLSGELEETRYRRPDDGGAPLELVGRERLLPGGVTYIFDPHGIHRVENPSGD 153 (175)
T ss_dssp T-EEEEEEE-TT-B--EEE-TTSEEEEEEEESEEEEEEEEESTSSS-EEEECEEEEEETTTEEEEBTTTBEEEEEES-SS
T ss_pred CeEEEEEEeCCCCcCCCCCCCCceEEEEEecceEEEEEeccCCcccCcccccCceEecCCCeEEecCCCCeEEeccCCCC
Confidence 35677788999999999999977778999999998877643321 1234567888888899999999887537
Q ss_pred CCEEEEEEEeC
Q 027536 168 KPALALSGLSS 178 (222)
Q Consensus 168 ~~a~~i~~~~s 178 (222)
++++-+=+|+.
T Consensus 154 ~~avSLHvYsp 164 (175)
T PF05995_consen 154 EPAVSLHVYSP 164 (175)
T ss_dssp S-EEEEEEEES
T ss_pred CCEEEEEEcCC
Confidence 88887777754
No 58
>PF00908 dTDP_sugar_isom: dTDP-4-dehydrorhamnose 3,5-epimerase; InterPro: IPR000888 Deoxythymidine diphosphate (dTDP)-4-keto-6-deoxy-d-hexulose 3, 5-epimerase (RmlC, 5.1.3.13 from EC) is involved in the biosynthesis of dTDP-l-rhamnose, which is an essential component of the bacterial cell wall, converting dTDP-4-keto-6-deoxy-D-glucose to dTDP-4-keto-L-rhamnose. The crystal structure of RmlC from Methanobacterium thermoautotrophicum was determined in the presence and absence of a substrate analogue. RmlC is a homodimer comprising a central jelly roll motif, which extends in two directions into longer beta-sheets. Binding of dTDP is stabilised by ionic interactions to the phosphate group and by a combination of ionic and hydrophobic interactions with the base. The active site, which is located in the centre of the jelly roll, is formed by residues that are conserved in all known RmlC sequence homologues. The active site is lined with a number of charged residues and a number of residues with hydrogen-bonding potentials, which together comprise a potential network for substrate binding and catalysis. The active site is also lined with aromatic residues which provide favorable environments for the base moiety of dTDP and potentially for the sugar moiety of the substrate [].; GO: 0008830 dTDP-4-dehydrorhamnose 3,5-epimerase activity, 0009103 lipopolysaccharide biosynthetic process; PDB: 1EPZ_A 1EP0_A 1NXM_A 1NZC_D 2IXL_C 1NYW_B 2IXC_D 1PM7_B 1UPI_A 3RYK_B ....
Probab=96.69 E-value=0.0073 Score=50.04 Aligned_cols=63 Identities=17% Similarity=0.375 Sum_probs=51.5
Q ss_pred cCCcccCCccCCCC---cEEEEEEeCeEEEEEEec------CCcEEEEEECCCC--EEEEcCCCeeEEEecCCCC
Q 027536 105 AANGIVPPHTHPRA---SEVTICLKGALLVGFVDT------LGRLFTQQLRPGD--SFVFPKGLIHFLYNMDSSK 168 (222)
Q Consensus 105 ~pGg~~~pH~H~~a---~Ei~yVl~G~~~~~~v~~------~~~~~~~~L~~GD--v~viP~G~~H~~~N~g~~~ 168 (222)
.+|.+..+|+|... ..++.|++|++..-++|- -|+.....|.+++ .++||+|..|-..+.+ ++
T Consensus 51 ~~gvlRGlH~q~~~~~q~Klv~~~~G~i~dV~vDlR~~SpTfg~~~~~~Ls~~n~~~l~IP~G~aHGf~~l~-d~ 124 (176)
T PF00908_consen 51 KKGVLRGLHYQSPPYAQAKLVRCLRGEIFDVAVDLRKGSPTFGKWVSVELSAENPRQLYIPPGVAHGFQTLE-DD 124 (176)
T ss_dssp ETTBEEEEEEESTTT-EEEEEEEEESEEEEEEEE-BTTSTTTT-EEEEEEETTT--EEEE-TTEEEEEEESS-SE
T ss_pred cccEEEEEEEecCCCCCCcEEEEecCeEEEEEEECCCCCCCCCEEEEEEeCccccCEEEeCCcceeeEEecc-Cc
Confidence 35888999999864 689999999999999973 1788888998886 7999999999999887 55
No 59
>COG3435 Gentisate 1,2-dioxygenase [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=96.66 E-value=0.0071 Score=53.91 Aligned_cols=64 Identities=23% Similarity=0.200 Sum_probs=55.1
Q ss_pred EEcCCcccCCccCCCCcEEEEEEeCeEEEEEEecCCcEEEEEECCCCEEEEcCCCeeEEEecCCCCCEEEEE
Q 027536 103 DIAANGIVPPHTHPRASEVTICLKGALLVGFVDTLGRLFTQQLRPGDSFVFPKGLIHFLYNMDSSKPALALS 174 (222)
Q Consensus 103 ~l~pGg~~~pH~H~~a~Ei~yVl~G~~~~~~v~~~~~~~~~~L~~GDv~viP~G~~H~~~N~g~~~~a~~i~ 174 (222)
-++||-...+|.|.+ +-+.-|.+|++++.+ +|+ ++..++||+|++|.=.-|...| | .+++.+++
T Consensus 267 lL~~Gf~~~~~r~t~-s~iy~V~eGsg~~~I---g~~--rf~~~~~D~fvVPsW~~~~~~~-g-s~da~LFs 330 (351)
T COG3435 267 LLPPGFHGKAHRHTD-STIYHVVEGSGYTII---GGE--RFDWSAGDIFVVPSWAWHEHVN-G-SEDAVLFS 330 (351)
T ss_pred hcCCcccCCceeccC-CEEEEEEecceeEEE---CCE--EeeccCCCEEEccCcceeeccc-C-CcceEEEe
Confidence 467888889999986 889999999999988 555 5899999999999999999986 4 68888775
No 60
>PF13621 Cupin_8: Cupin-like domain; PDB: 3AL6_C 3AL5_C 2XUM_A 2Y0I_A 1MZE_A 3KCY_A 1MZF_A 1YCI_A 2ILM_A 1H2L_A ....
Probab=96.23 E-value=0.029 Score=47.26 Aligned_cols=69 Identities=19% Similarity=0.301 Sum_probs=49.5
Q ss_pred EEEEEEcC-CcccCCccCCCCcEEEEEEeCeEEEEEEecC--------C---------------------------cEEE
Q 027536 99 MARIDIAA-NGIVPPHTHPRASEVTICLKGALLVGFVDTL--------G---------------------------RLFT 142 (222)
Q Consensus 99 ~~~v~l~p-Gg~~~pH~H~~a~Ei~yVl~G~~~~~~v~~~--------~---------------------------~~~~ 142 (222)
...+-+.+ |...++|+.+ ..-++.+++|+=++.++.++ . +.+.
T Consensus 132 ~~~l~ig~~gs~t~lH~D~-~~n~~~~i~G~K~~~L~pP~~~~~l~~~~~~~~~~~~~~~d~~~~d~~~~p~~~~~~~~~ 210 (251)
T PF13621_consen 132 SSNLWIGPPGSFTPLHYDP-SHNLLAQIRGRKRWILFPPDDSPNLYPRPDSHGGTVFSWVDPDNPDLERFPKFRKAPPYE 210 (251)
T ss_dssp EEEEEEE-TTEEEEEEE-S-SEEEEEEEESEEEEEEE-GGGGGGCTBETTTST-TCBBSS-TTS--TTT-CGGGG--EEE
T ss_pred ccEEEEeCCCceeeeeECc-hhhhhhccCCCEEEEEECCccccccccceecccccceeeeeccChhhhhhhhhccCceeE
Confidence 34455555 6678999988 58899999999999887542 1 3468
Q ss_pred EEECCCCEEEEcCCCeeEEEecCCCCC
Q 027536 143 QQLRPGDSFVFPKGLIHFLYNMDSSKP 169 (222)
Q Consensus 143 ~~L~~GDv~viP~G~~H~~~N~g~~~~ 169 (222)
.+|++||+++||+|..|+++|.+ +++
T Consensus 211 ~~l~pGD~LfiP~gWwH~V~~~~-~~~ 236 (251)
T PF13621_consen 211 VVLEPGDVLFIPPGWWHQVENLS-DDD 236 (251)
T ss_dssp EEEETT-EEEE-TT-EEEEEEST-TSS
T ss_pred EEECCCeEEEECCCCeEEEEEcC-CCC
Confidence 89999999999999999999984 444
No 61
>PRK10572 DNA-binding transcriptional regulator AraC; Provisional
Probab=95.60 E-value=0.066 Score=46.73 Aligned_cols=48 Identities=27% Similarity=0.393 Sum_probs=38.5
Q ss_pred CccCCCCcEEEEEEeCeEEEEEEecCCcEEEEEECCCCEEEEcCCCeeEEEecC
Q 027536 112 PHTHPRASEVTICLKGALLVGFVDTLGRLFTQQLRPGDSFVFPKGLIHFLYNMD 165 (222)
Q Consensus 112 pH~H~~a~Ei~yVl~G~~~~~~v~~~~~~~~~~L~~GDv~viP~G~~H~~~N~g 165 (222)
||-+. +.++.++++|++.+.+ +++ .+.+++||++++|+|.+|......
T Consensus 44 ~~~~~-~~~i~~~~~G~~~~~~---~~~--~~~~~~g~~i~i~p~~~h~~~~~~ 91 (290)
T PRK10572 44 PLGMK-GYILNLTIRGQGVIFN---GGR--AFVCRPGDLLLFPPGEIHHYGRHP 91 (290)
T ss_pred CCCcc-ceEEEEEEeccEEEec---CCe--eEecCCCCEEEECCCCceeeccCC
Confidence 44443 5789999999999876 455 489999999999999999876544
No 62
>PF08007 Cupin_4: Cupin superfamily protein; InterPro: IPR022777 This signature represents primarily the cupin fold found in JmjC transcription factors. The fold is also found in lysine-specific demethylase NO66.; PDB: 2XDV_A 1VRB_B 4DIQ_B.
Probab=95.33 E-value=0.1 Score=46.88 Aligned_cols=67 Identities=21% Similarity=0.249 Sum_probs=45.2
Q ss_pred EEEEEEEcCCc--ccCCccCCCCcEEEEEEeCeEEEEEEecC------------------CcEEEEEECCCCEEEEcCCC
Q 027536 98 TMARIDIAANG--IVPPHTHPRASEVTICLKGALLVGFVDTL------------------GRLFTQQLRPGDSFVFPKGL 157 (222)
Q Consensus 98 s~~~v~l~pGg--~~~pH~H~~a~Ei~yVl~G~~~~~~v~~~------------------~~~~~~~L~~GDv~viP~G~ 157 (222)
..+.+.+.|++ -..|||=.. .-+++=++|+=+..+.... ......+|++||++|+|+|.
T Consensus 114 ~~~n~Y~tp~g~~g~~~H~D~~-dvfvlQ~~G~K~W~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~pGD~LYlPrG~ 192 (319)
T PF08007_consen 114 VGANAYLTPPGSQGFGPHYDDH-DVFVLQLEGRKRWRLYPPPDEPAPLYSDQPFKQLEEFEPVEEVVLEPGDVLYLPRGW 192 (319)
T ss_dssp EEEEEEEETSSBEESECEE-SS-EEEEEEEES-EEEEEE-SCCCTTTSSCE--TTTCG--STSEEEEE-TT-EEEE-TT-
T ss_pred cceEEEecCCCCCCccCEECCc-ccEEEECCceeEEEECCCCcccccccCCCCccccccCceeEEEEECCCCEEEECCCc
Confidence 34556677877 789998773 6777778899888887621 11346899999999999999
Q ss_pred eeEEEecC
Q 027536 158 IHFLYNMD 165 (222)
Q Consensus 158 ~H~~~N~g 165 (222)
.|.....+
T Consensus 193 ~H~~~~~~ 200 (319)
T PF08007_consen 193 WHQAVTTD 200 (319)
T ss_dssp EEEEEESS
T ss_pred cCCCCCCC
Confidence 99998754
No 63
>PF04209 HgmA: homogentisate 1,2-dioxygenase; InterPro: IPR005708 Alkaptonuria (AKU), a rare hereditary disorder, was the first disease to be interpreted as an inborn error of metabolism. The deficiency causes homogentisic aciduria, ochronosis, and arthritis. AKU patients are deficient for homogentisate 1,2 dioxygenase (1.13.11.5 from EC), the enzyme that mediates the conversion of homogentisate to maleylacetoacetate; a step in the catabolism of both tyrosine and phenylalanine. Homogentisate + O(2) = 4-maleylacetoacetate. ; GO: 0004411 homogentisate 1,2-dioxygenase activity, 0006559 L-phenylalanine catabolic process, 0006570 tyrosine metabolic process, 0055114 oxidation-reduction process; PDB: 1EY2_A 1EYB_A.
Probab=95.31 E-value=0.086 Score=49.33 Aligned_cols=60 Identities=20% Similarity=0.338 Sum_probs=39.1
Q ss_pred CCccCCCCcEEEEEEeCeEEEEEEecCCcEEEEEECCCCEEEEcCCCeeEEEecCCCCCEEEEEEE
Q 027536 111 PPHTHPRASEVTICLKGALLVGFVDTLGRLFTQQLRPGDSFVFPKGLIHFLYNMDSSKPALALSGL 176 (222)
Q Consensus 111 ~pH~H~~a~Ei~yVl~G~~~~~~v~~~~~~~~~~L~~GDv~viP~G~~H~~~N~g~~~~a~~i~~~ 176 (222)
..-++.+++|++++-+|++++.- +-|+ ..+++||+++||+|+.+.+.-.| .....++..+
T Consensus 139 ~~f~NaDGD~Li~~q~G~l~l~T--e~G~---L~v~pGd~~VIPRG~~~rv~l~~-p~rgyi~E~~ 198 (424)
T PF04209_consen 139 RAFRNADGDELIFPQQGSLRLET--EFGR---LDVRPGDYVVIPRGTRFRVELPG-PARGYIIENF 198 (424)
T ss_dssp EEEEESSEEEEEEEEES-EEEEE--TTEE---EEE-TTEEEEE-TT--EEEE-SS-SEEEEEEEEE
T ss_pred cceEcCCCCEEEEEEECCEEEEe--cCee---EEEcCCeEEEECCeeEEEEEeCC-CceEEEEEcC
Confidence 34447789999999999998764 3365 58999999999999999986444 4333344334
No 64
>PF12852 Cupin_6: Cupin
Probab=95.26 E-value=0.039 Score=45.26 Aligned_cols=42 Identities=24% Similarity=0.502 Sum_probs=34.8
Q ss_pred cEEEEEEeCeEEEEEEecCCcEEEEEECCCCEEEEcCCCeeEEEe
Q 027536 119 SEVTICLKGALLVGFVDTLGRLFTQQLRPGDSFVFPKGLIHFLYN 163 (222)
Q Consensus 119 ~Ei~yVl~G~~~~~~v~~~~~~~~~~L~~GDv~viP~G~~H~~~N 163 (222)
.-+.+|++|++.+.+-+. ++ ...|++||++++|+|..|....
T Consensus 36 ~~fh~V~~G~~~l~~~~~-~~--~~~L~~GDivllp~g~~H~l~~ 77 (186)
T PF12852_consen 36 ASFHVVLRGSCWLRVPGG-GE--PIRLEAGDIVLLPRGTAHVLSS 77 (186)
T ss_pred eEEEEEECCeEEEEEcCC-CC--eEEecCCCEEEEcCCCCeEeCC
Confidence 678899999999997321 23 5899999999999999999953
No 65
>PF14499 DUF4437: Domain of unknown function (DUF4437); PDB: 2QDR_A.
Probab=95.14 E-value=0.016 Score=50.57 Aligned_cols=75 Identities=19% Similarity=0.212 Sum_probs=44.5
Q ss_pred eEEEEEEEcCCcccCCccCCCCcEEEEEEeCeEEEEEEecCCcEEEEEECCCCEEEEcCCCeeEEEecCCCCCEEEEEEE
Q 027536 97 LTMARIDIAANGIVPPHTHPRASEVTICLKGALLVGFVDTLGRLFTQQLRPGDSFVFPKGLIHFLYNMDSSKPALALSGL 176 (222)
Q Consensus 97 is~~~v~l~pGg~~~pH~H~~a~Ei~yVl~G~~~~~~v~~~~~~~~~~L~~GDv~viP~G~~H~~~N~g~~~~a~~i~~~ 176 (222)
+.-..+.++.|....+|+|. ..|-.|||+|++..+.-...+ ...|.+|..|.-|.+..|... .+ +++++++...
T Consensus 171 ~~gll~kLPagf~g~i~~h~-~~eraVvI~G~~~~~~~~~~~---~~~L~~GSYf~s~~~~~H~~~-~~-e~~~vlyIRt 244 (251)
T PF14499_consen 171 YTGLLLKLPAGFTGRIHTHA-SNERAVVISGELDYQSYGASN---FGTLDPGSYFGSPGHITHGIF-IT-EDECVLYIRT 244 (251)
T ss_dssp E-EEEEE-SSEE--SEEE---S-EEEEEEEEEEEETTEEEET---TEEEEE-TT-EE--E-------EE-SS-EEEEEEE
T ss_pred eeeEEEEcCCCCcCceeccC-CceEEEEEEeEEEEeecccCC---CccccCCcccccCCccccccc-cc-CCCEEEEEEE
Confidence 44556677777788999999 599999999999986643222 379999999999999999998 67 8899988655
Q ss_pred e
Q 027536 177 S 177 (222)
Q Consensus 177 ~ 177 (222)
+
T Consensus 245 d 245 (251)
T PF14499_consen 245 D 245 (251)
T ss_dssp S
T ss_pred C
Confidence 4
No 66
>PRK05341 homogentisate 1,2-dioxygenase; Provisional
Probab=95.05 E-value=0.2 Score=46.93 Aligned_cols=60 Identities=18% Similarity=0.239 Sum_probs=46.1
Q ss_pred cCCccCCCCcEEEEEEeCeEEEEEEecCCcEEEEEECCCCEEEEcCCCeeEEEecCCCCCEEEEEEE
Q 027536 110 VPPHTHPRASEVTICLKGALLVGFVDTLGRLFTQQLRPGDSFVFPKGLIHFLYNMDSSKPALALSGL 176 (222)
Q Consensus 110 ~~pH~H~~a~Ei~yVl~G~~~~~~v~~~~~~~~~~L~~GDv~viP~G~~H~~~N~g~~~~a~~i~~~ 176 (222)
...-++.+++|++++-+|++++.- +-|+ ..+++||++|||+|+.+.+. .. ++++..+.+=
T Consensus 146 ~~~f~NaDGD~Livpq~G~l~i~T--EfG~---L~v~pgei~VIPRG~~frv~-l~-~gp~rgyi~E 205 (438)
T PRK05341 146 DRYFYNADGELLIVPQQGRLRLAT--ELGV---LDVEPGEIAVIPRGVKFRVE-LP-DGPARGYVCE 205 (438)
T ss_pred cceeecCCCCEEEEEEeCCEEEEE--eccc---eEecCCCEEEEcCccEEEEe-cC-CCCeeEEEEE
Confidence 444557789999999999999764 3366 58999999999999999886 43 4566665543
No 67
>PF02678 Pirin: Pirin; InterPro: IPR003829 This entry represents N-terminal domain of Pirin proteins from both eukaryotes and prokaryotes. The function of Pirin is unknown but the gene coding for this protein is known to be expressed in all tissues in the human body although it is expressed most strongly in the liver and heart. Pirin is known to be a nuclear protein, exclusively localised within the nucleoplasma and predominantly concentrated within dot-like subnuclear structures []. Pirin is composed of two structurally similar domains arranged face to face. The N-terminal domain additionally features four beta-strands, and the C-terminal domain also includes four additional -strands and a short alpha-helix. Although the two domains are similar, the C-terminal domain of Pirin differs from the N-terminal domain as it does not contain a metal binding site and its sequence does not contain the conserved metal-coordinating residues []. Pirin is confirmed to be a member of the cupin superfamily on the basis of primary sequence and structural similarity. The presence of a metal binding site in the N-terminal beta-barrel of Pirin, may be significant in its role in regulating NFI DNA replication and NF-kappaB transcription factor activity []. Pirin structure has been found to closely resemble members of the cupin superfamily. Pirin contains the two characteristic sequences of the cupin superfamily, namely PG-(X)5-HXH-(X)4-E-(X)6-G and G-(X)5-PXG-(X)2-H-(X)3-N separated by a variable stretch of 15-50 amino acids. These motifs are best conserved in the N-terminal where the conserved histidine and glutamic acid residues correspond to the metal-coordinating residues. The C-terminal domain motifs lack the metal binding residues normally associated with the cupin fold []. Pirin was identified to be a metal-binding protein [], and was found that the metal-binding residues of Pirins are highly conserved across mammals, plants, fungi, and prokaryotic organisms. Pirin acts as a cofactor for the transcription factor NFI, the regulatory mechanism of which is generally believed to require the assistance of a metal ion []. Structural data supports the hypothesis that the bound iron of Pirin may participate in this transcriptional regulation by enhancing and stabilising the formation of the p50,Bcl3,DNA complex []. Metals have been implicated directly or indirectly in the NF-kappaB family of transcription factors that control expression of a number of early response genes associated with inflammatory responses, cell growth, cell cycle progression, and neoplastic transformation []. However, most metal-dependent transcription factors are DNA-binding proteins that bind to specific sequences when the metal binds to the protein. Pirin, on the other hand, appears to function differently and bind to the transcription factor DNA complex [].; PDB: 2VEC_A 1J1L_A 3ACL_A 2P17_A 1TQ5_A.
Probab=95.04 E-value=0.083 Score=40.29 Aligned_cols=62 Identities=32% Similarity=0.403 Sum_probs=45.3
Q ss_pred CcccCCccCCCCcEEEEEEeCeEEEEEEecCCcEEEEEECCCCEEEEcC--CCeeEEEecCCC-CCEEEE
Q 027536 107 NGIVPPHTHPRASEVTICLKGALLVGFVDTLGRLFTQQLRPGDSFVFPK--GLIHFLYNMDSS-KPALAL 173 (222)
Q Consensus 107 Gg~~~pH~H~~a~Ei~yVl~G~~~~~~v~~~~~~~~~~L~~GDv~viP~--G~~H~~~N~g~~-~~a~~i 173 (222)
+.-.++|-|.+-+-+.||++|++.- .|+.|. ..+|++||+-++-+ |..|...|.+ + +++..+
T Consensus 39 ~~gf~~HPH~g~eivTyv~~G~~~H--~Ds~G~--~~~l~~G~vq~m~AG~Gi~H~E~~~~-~~~~~~~l 103 (107)
T PF02678_consen 39 GAGFPMHPHRGFEIVTYVLEGELRH--RDSLGN--RGVLRAGDVQWMTAGSGIVHSERNAS-DGGPLHGL 103 (107)
T ss_dssp TTEEEEEEECSEEEEEEEEESEEEE--EETTSE--EEEEETTEEEEEE-TTTEEEEEEE-T-SSS-EEEE
T ss_pred CCCCCCcCCCCceEEEEEecCEEEE--ECCCCC--eeEeCCCeEEEEeCCCCceEEEecCC-CCCeEEEE
Confidence 5556899999766678999998865 455565 47899999888764 5899999987 5 666654
No 68
>PLN02658 homogentisate 1,2-dioxygenase
Probab=94.58 E-value=0.32 Score=45.65 Aligned_cols=58 Identities=19% Similarity=0.330 Sum_probs=44.7
Q ss_pred CccCCCCcEEEEEEeCeEEEEEEecCCcEEEEEECCCCEEEEcCCCeeEEEecCCCCCEEEEEEE
Q 027536 112 PHTHPRASEVTICLKGALLVGFVDTLGRLFTQQLRPGDSFVFPKGLIHFLYNMDSSKPALALSGL 176 (222)
Q Consensus 112 pH~H~~a~Ei~yVl~G~~~~~~v~~~~~~~~~~L~~GDv~viP~G~~H~~~N~g~~~~a~~i~~~ 176 (222)
.-++.+++|++++-+|++.+.- +-|+ ..+++||+++||+|+.+.+. .- ++++..+.+=
T Consensus 141 ~f~NaDGD~Livpq~G~l~i~T--EfG~---L~v~pgei~VIPRG~~frv~-l~-~gp~rgyv~E 198 (435)
T PLN02658 141 AFCNADGDFLIVPQQGRLWIKT--ELGK---LQVSPGEIVVIPRGFRFAVD-LP-DGPSRGYVLE 198 (435)
T ss_pred eeecCCCCEEEEEEeCCEEEEE--eccc---eEecCCCEEEecCccEEEEe-cC-CCCeeEEEEe
Confidence 3567789999999999999764 3376 58999999999999998886 33 4566655443
No 69
>PF05118 Asp_Arg_Hydrox: Aspartyl/Asparaginyl beta-hydroxylase; InterPro: IPR007803 The alpha-ketoglutarate-dependent dioxygenase aspartyl (asparaginyl) beta-hydroxylase (1.14.11.16 from EC) specifically hydroxylates one aspartic or asparagine residue in certain epidermal growth factor-like domains of a number of proteins. Its action may be due to histidine-675, which, when mutated to an alanine residue, causes the loss of enzymatic activity in the protein []. An invertebrate alpha-ketoglutarate-dependent aspartyl/asparaginyl beta-hydroxylase, which posttranslationally hydroxylates specific aspartyl or asparaginyl residues within epidermal growth factor-like modules [], activity was found to be similar to that of the purified mammalian aspartyl/asparaginyl beta-hydroxylase with respect to cofactor requirements, stereochemistry and substrate sequence specificity []. This enzyme requires Fe2+ as a cofactor. Some vitamin K-dependent coagulation factors, as well as synthetic peptides based on the structure of the first epidermal growth factor domain of human coagulation factor IX or X, can act as acceptors.; GO: 0018193 peptidyl-amino acid modification, 0030176 integral to endoplasmic reticulum membrane; PDB: 3RCQ_A 1E5S_A 1E5R_B.
Probab=94.51 E-value=0.12 Score=41.99 Aligned_cols=82 Identities=21% Similarity=0.393 Sum_probs=48.9
Q ss_pred CCCCCccc-cce-EEEEEEEcCCcccCCccCCCCc----EEEEEE-eCeEEEEEEecCCcEEEEEECCCCEEEEcCCCee
Q 027536 87 KNLPGVNT-MGL-TMARIDIAANGIVPPHTHPRAS----EVTICL-KGALLVGFVDTLGRLFTQQLRPGDSFVFPKGLIH 159 (222)
Q Consensus 87 ~~fP~l~~-lgi-s~~~v~l~pGg~~~pH~H~~a~----Ei~yVl-~G~~~~~~v~~~~~~~~~~L~~GDv~viP~G~~H 159 (222)
+++|.... ..+ .+....+.||+.+.||.-+... .+-+++ .+.+.+.+ +++ .+..++|+++++.-...|
T Consensus 68 ~~lp~~~~~~~~~~~~~s~l~pg~~I~pH~d~~~~~lR~Hl~L~~p~~~~~~~v---~~~--~~~w~~G~~~~fD~s~~H 142 (163)
T PF05118_consen 68 EQLPGVTGGCPLGRVRFSRLPPGTHIKPHRDPTNLRLRLHLPLIVPNPGCYIRV---GGE--TRHWREGECWVFDDSFEH 142 (163)
T ss_dssp CCSHHHHCSTTCEEEEEEEEECTEEEEEE-SS-TTEEEEEEEEC--STTEEEEE---TTE--EEB--CTEEEEE-TTS-E
T ss_pred HhCcccccccchhhEEEEEECCCCEECCeeCCCCcceEEEEEEEcCCCCeEEEE---CCe--EEEeccCcEEEEeCCEEE
Confidence 45555443 223 3444578999999999977422 233333 24455555 344 578999999999999999
Q ss_pred EEEecCCCCCEEEEE
Q 027536 160 FLYNMDSSKPALALS 174 (222)
Q Consensus 160 ~~~N~g~~~~a~~i~ 174 (222)
...|.| +++-+.+.
T Consensus 143 ~~~N~~-~~~Rv~L~ 156 (163)
T PF05118_consen 143 EVWNNG-DEDRVVLI 156 (163)
T ss_dssp EEEESS-SS-EEEEE
T ss_pred EEEeCC-CCCEEEEE
Confidence 999998 66655543
No 70
>PRK09685 DNA-binding transcriptional activator FeaR; Provisional
Probab=94.43 E-value=0.37 Score=42.14 Aligned_cols=65 Identities=18% Similarity=0.205 Sum_probs=46.4
Q ss_pred ceEEEEEEEcCCccc-----CCccCCCCcEEEEEEeCeEEEEEEecCCcEEEEEECCCCEEEEcCCCeeEEEecC
Q 027536 96 GLTMARIDIAANGIV-----PPHTHPRASEVTICLKGALLVGFVDTLGRLFTQQLRPGDSFVFPKGLIHFLYNMD 165 (222)
Q Consensus 96 gis~~~v~l~pGg~~-----~pH~H~~a~Ei~yVl~G~~~~~~v~~~~~~~~~~L~~GDv~viP~G~~H~~~N~g 165 (222)
++.+.++...+..+. ..|.+.+...++++++|++.+.. +|+ ...+++||++++|++.+|.+.-.+
T Consensus 44 ~~~l~~~~~~~~~~~R~~~~i~~~~~~~~~l~~~~~G~~~~~~---~g~--~~~l~~G~~~l~~~~~p~~~~~~~ 113 (302)
T PRK09685 44 GLKLSTVTTNAVNLSRTWQEIKHSDDAHFFTVFQLSGHAIIEQ---DDR--QVQLAAGDITLIDASRPCSIYPQG 113 (302)
T ss_pred CEEEEEEecCCceEEeChHHhccCCCCcEEEEEEecceEEEEE---CCe--EEEEcCCCEEEEECCCCcEeecCC
Confidence 355666665554332 23445555667888999999887 566 479999999999999999876443
No 71
>TIGR01015 hmgA homogentisate 1,2-dioxygenase. Missing in human disease alkaptonuria.
Probab=94.41 E-value=0.34 Score=45.39 Aligned_cols=62 Identities=16% Similarity=0.254 Sum_probs=45.7
Q ss_pred cCCccCCCCcEEEEEEeCeEEEEEEecCCcEEEEEECCCCEEEEcCCCeeEEEecCCCCCEEEEEEEe
Q 027536 110 VPPHTHPRASEVTICLKGALLVGFVDTLGRLFTQQLRPGDSFVFPKGLIHFLYNMDSSKPALALSGLS 177 (222)
Q Consensus 110 ~~pH~H~~a~Ei~yVl~G~~~~~~v~~~~~~~~~~L~~GDv~viP~G~~H~~~N~g~~~~a~~i~~~~ 177 (222)
...-++.+++|++++-+|++.+.- +-|+ ..+++||+++||+|+.+.+.=.| .....++..+.
T Consensus 140 ~~~f~NaDGD~Livpq~G~l~i~T--EfG~---L~v~pgei~VIPRG~~frv~l~g-p~rgyi~E~~g 201 (429)
T TIGR01015 140 NRAFYNADGDFLIVPQQGALLITT--EFGR---LLVEPNEICVIPRGVRFRVTVLE-PARGYICEVYG 201 (429)
T ss_pred cceeeccCCCEEEEEEeCcEEEEE--eccc---eEecCCCEEEecCccEEEEeeCC-CceEEEEeccC
Confidence 444557789999999999999865 3366 59999999999999999886434 43344444443
No 72
>KOG3995 consensus 3-hydroxyanthranilate oxygenase HAAO [Amino acid transport and metabolism]
Probab=94.38 E-value=0.068 Score=45.53 Aligned_cols=56 Identities=23% Similarity=0.347 Sum_probs=47.9
Q ss_pred cCCcccCCccCCCCcEEEEEEeCeEEEEEEecCCcEEEEEECCCCEEEEcCCCeeEEE
Q 027536 105 AANGIVPPHTHPRASEVTICLKGALLVGFVDTLGRLFTQQLRPGDSFVFPKGLIHFLY 162 (222)
Q Consensus 105 ~pGg~~~pH~H~~a~Ei~yVl~G~~~~~~v~~~~~~~~~~L~~GDv~viP~G~~H~~~ 162 (222)
.|+..-.-|..+ ..|++|=.+|...+.+++. ++.....+++||++..|...+|.-.
T Consensus 41 GPN~RkdyHiee-geE~FyQ~KGdMvLKVie~-g~~rDivI~qGe~flLParVpHSPq 96 (279)
T KOG3995|consen 41 GPNTRKDYHIEE-GEEVFYQLKGDMVLKVLEQ-GKHRDVVIRQGEIFLLPARVPHSPQ 96 (279)
T ss_pred CCCcccccccCC-cchhheeecCceEEeeecc-CcceeeEEecCcEEEeccCCCCChh
Confidence 455555678887 6999999999999999986 7777899999999999999999754
No 73
>COG3806 ChrR Transcriptional activator [Transcription]
Probab=94.38 E-value=0.26 Score=41.62 Aligned_cols=86 Identities=23% Similarity=0.198 Sum_probs=66.1
Q ss_pred cCCcEEEEeccCCCCCccccceEEEEEEEcCCcccCCccCCCCcEEEEEEeCeEEEEEEecCCcEEEEEECCCCEEEEcC
Q 027536 76 IFGFNATLTNTKNLPGVNTMGLTMARIDIAANGIVPPHTHPRASEVTICLKGALLVGFVDTLGRLFTQQLRPGDSFVFPK 155 (222)
Q Consensus 76 ~~g~~v~~~~~~~fP~l~~lgis~~~v~l~pGg~~~pH~H~~a~Ei~yVl~G~~~~~~v~~~~~~~~~~L~~GDv~viP~ 155 (222)
..|+++..+...+ .-..+++++.+.||..+|-|+|- +-|.+.|++|... |++| ++.+||...-+.
T Consensus 112 ~~G~rv~~v~l~~-----dds~~V~llki~~g~s~P~HtH~-G~E~t~vl~G~~s----de~G-----~y~vgD~~~~d~ 176 (216)
T COG3806 112 GPGGRVEPVRLPT-----DDSRRVALLKIEPGRSFPDHTHV-GIERTAVLEGAFS----DENG-----EYLVGDFTLADG 176 (216)
T ss_pred cCCcceeecccCC-----CCCceeEEEEeccCccccccccc-ceEEEEEEeeccc----cCCC-----ccccCceeecCC
Confidence 3466665554333 12568999999999999999998 6999999999743 4444 678999999999
Q ss_pred CCeeEEEecCCCCCEEEEEEEe
Q 027536 156 GLIHFLYNMDSSKPALALSGLS 177 (222)
Q Consensus 156 G~~H~~~N~g~~~~a~~i~~~~ 177 (222)
+.-|.-.-.. +.++..++++.
T Consensus 177 ~v~H~piv~~-~~eClcl~al~ 197 (216)
T COG3806 177 TVQHSPIVLP-PGECLCLAALD 197 (216)
T ss_pred ccccccccCC-CCCceEEEEcC
Confidence 9999865455 78888888774
No 74
>PF07385 DUF1498: Protein of unknown function (DUF1498); InterPro: IPR010864 This family consists of several hypothetical bacterial proteins of around 225 residues in length. The function of this family is unknown.; PDB: 3MPB_B 3KMH_A.
Probab=94.13 E-value=0.37 Score=41.30 Aligned_cols=76 Identities=22% Similarity=0.407 Sum_probs=45.8
Q ss_pred EEEcCCcccCCccCCCCcEEEEEEe-CeEEEEEEecC----------------CcEE------EEEECCCCEEEEcCCCe
Q 027536 102 IDIAANGIVPPHTHPRASEVTICLK-GALLVGFVDTL----------------GRLF------TQQLRPGDSFVFPKGLI 158 (222)
Q Consensus 102 v~l~pGg~~~pH~H~~a~Ei~yVl~-G~~~~~~v~~~----------------~~~~------~~~L~~GDv~viP~G~~ 158 (222)
+.+.+|...|.|+|..-.|=++--- |.+.+.+..++ |+.. ...|+||+.+-+++|.-
T Consensus 92 m~~~~~Q~tP~H~H~~K~EDIINRGGG~L~i~l~~s~~~~~~~~~~~v~V~~DG~~~t~~aG~~l~L~PGESiTL~Pg~y 171 (225)
T PF07385_consen 92 MIVREGQVTPMHFHWKKMEDIINRGGGNLVIELYNSDPDGELDADTDVTVPVDGIRRTVPAGTQLRLNPGESITLPPGIY 171 (225)
T ss_dssp EEE-BT-EEEEEEESS--EEEEEEEES-EEEEEEEB--TTSSB-SS-EEEEETTEEEEE-TT-EEEE-TT-EEEE-TTEE
T ss_pred eeccCCCcCCcccCcchhhheeecCCceEEEEEEeccCCCccccCCCeEEecCCcEEEecCCceEEeCCCCeEeeCCCCe
Confidence 5678999999999997677666554 67777776532 2211 46899999999999999
Q ss_pred eEEEecCCCCCEEEEEEEeCCC
Q 027536 159 HFLYNMDSSKPALALSGLSSQN 180 (222)
Q Consensus 159 H~~~N~g~~~~a~~i~~~~s~~ 180 (222)
|+++--+ +. +++.-+++-|
T Consensus 172 H~Fw~e~--g~-vLigEVStvN 190 (225)
T PF07385_consen 172 HWFWGEG--GD-VLIGEVSTVN 190 (225)
T ss_dssp EEEEE-T--TS-EEEEEEEE--
T ss_pred eeEEecC--CC-EEEEeeeccc
Confidence 9998543 33 5655555443
No 75
>COG1741 Pirin-related protein [General function prediction only]
Probab=94.06 E-value=0.22 Score=44.19 Aligned_cols=69 Identities=32% Similarity=0.462 Sum_probs=51.6
Q ss_pred EEEEcCCcccCCccCCCCcEEEEEEeCeEEEEEEecCCcEEEEEECCCCEEEEcC--CCeeEEEec-CCCCCEEEE
Q 027536 101 RIDIAANGIVPPHTHPRASEVTICLKGALLVGFVDTLGRLFTQQLRPGDSFVFPK--GLIHFLYNM-DSSKPALAL 173 (222)
Q Consensus 101 ~v~l~pGg~~~pH~H~~a~Ei~yVl~G~~~~~~v~~~~~~~~~~L~~GDv~viP~--G~~H~~~N~-g~~~~a~~i 173 (222)
..++.||.-.+||-|.+-+-+.||++|+++-. |+.|. ...+++||+-.+-+ |..|.-+|. ...++...+
T Consensus 48 ~~~~~pG~~f~pHPHrg~etvTyvl~G~i~Hr--DS~Gn--~~~i~pGdvqwMTAG~GI~HSE~~~~~~~~~l~~~ 119 (276)
T COG1741 48 PDVLAPGRGFPPHPHRGLETVTYVLDGEIEHR--DSLGN--KGVIRPGDVQWMTAGSGIVHSEMNPPSTGKPLHGL 119 (276)
T ss_pred cccccCCCcCCCCCCCCcEEEEEEEccEEEEe--ecCCc--eeeecccceeEEcCCCceeecccCCccCCCcccee
Confidence 45688999999999998666799999997754 44455 37999999988865 578998886 313344443
No 76
>PF06865 DUF1255: Protein of unknown function (DUF1255); InterPro: IPR009664 This family consists of several conserved hypothetical bacterial proteins of around 95 residues in length. The function of this family is unknown; PDB: 2OYZ_A 3HQX_A.
Probab=93.96 E-value=0.47 Score=35.41 Aligned_cols=68 Identities=19% Similarity=0.104 Sum_probs=44.5
Q ss_pred EEEEEcCCcccCCccCCCCcEEEEEEeCeEEEEEEecCCcEEEEEECCCCEEEEcCCCeeEEEecCCCCCEEEEEEE
Q 027536 100 ARIDIAANGIVPPHTHPRASEVTICLKGALLVGFVDTLGRLFTQQLRPGDSFVFPKGLIHFLYNMDSSKPALALSGL 176 (222)
Q Consensus 100 ~~v~l~pGg~~~pH~H~~a~Ei~yVl~G~~~~~~v~~~~~~~~~~L~~GDv~viP~G~~H~~~N~g~~~~a~~i~~~ 176 (222)
..-.+.||. .+....+.|+.-|++|++++.+- |..-.+++++|+.|.||++.-..++- .++...+|.|
T Consensus 26 TlGVm~pGe---Y~F~T~~~E~M~vvsG~l~V~lp---g~~ew~~~~aGesF~VpanssF~v~v---~~~~~Y~C~y 93 (94)
T PF06865_consen 26 TLGVMLPGE---YTFGTSAPERMEVVSGELEVKLP---GEDEWQTYSAGESFEVPANSSFDVKV---KEPTAYLCSY 93 (94)
T ss_dssp EEEEE-SEC---EEEEESS-EEEEEEESEEEEEET---T-SS-EEEETT-EEEE-TTEEEEEEE---SS-EEEEEEE
T ss_pred eEEEEeeeE---EEEcCCCCEEEEEEEeEEEEEcC---CCcccEEeCCCCeEEECCCCeEEEEE---CcceeeEEEe
Confidence 334456665 34455679999999999999994 33236899999999999999888764 3555555543
No 77
>COG3257 GlxB Uncharacterized protein, possibly involved in glyoxylate utilization [General function prediction only]
Probab=93.94 E-value=0.28 Score=42.12 Aligned_cols=76 Identities=12% Similarity=0.064 Sum_probs=58.1
Q ss_pred CCccccceEEEEEEEcCCcccCC-ccCCCCcEEEEEEeCeEEEEEEecCCcEEEEEECCCCEEEEcCCCeeEEEecCCCC
Q 027536 90 PGVNTMGLTMARIDIAANGIVPP-HTHPRASEVTICLKGALLVGFVDTLGRLFTQQLRPGDSFVFPKGLIHFLYNMDSSK 168 (222)
Q Consensus 90 P~l~~lgis~~~v~l~pGg~~~p-H~H~~a~Ei~yVl~G~~~~~~v~~~~~~~~~~L~~GDv~viP~G~~H~~~N~g~~~ 168 (222)
|.--..++-+..+.++||+.+|- -+|- .+.=+|||+|++...+ |+. ...+++||.+..-+-.+.+....| ..
T Consensus 175 P~d~r~Dmhv~ivsFePGa~ip~aEtHv-mEHGlyvLeGk~vYrL---n~d--wv~V~aGD~mwm~A~cpQacyagG-~g 247 (264)
T COG3257 175 PKELRFDMHVHIVSFEPGASIPYAETHV-MEHGLYVLEGKGVYRL---NNN--WVPVEAGDYIWMGAYCPQACYAGG-RG 247 (264)
T ss_pred ccccCcceEEEEEEecCCcccchhhhhh-hhcceEEEecceEEee---cCc--eEEeecccEEEeeccChhhhccCC-CC
Confidence 43334578899999999999873 4454 3556899999999988 444 579999999999999888888666 55
Q ss_pred CEEE
Q 027536 169 PALA 172 (222)
Q Consensus 169 ~a~~ 172 (222)
....
T Consensus 248 ~frY 251 (264)
T COG3257 248 AFRY 251 (264)
T ss_pred ceEE
Confidence 4443
No 78
>PRK00924 5-keto-4-deoxyuronate isomerase; Provisional
Probab=93.86 E-value=0.44 Score=42.25 Aligned_cols=84 Identities=19% Similarity=0.213 Sum_probs=57.0
Q ss_pred cceEEEEEEEcCCc---ccCCccCCCCcEEEE-EE--eCeEEEEEEecCCcEEEEEECCCCEEEEcCCCeeEEEecCCCC
Q 027536 95 MGLTMARIDIAANG---IVPPHTHPRASEVTI-CL--KGALLVGFVDTLGRLFTQQLRPGDSFVFPKGLIHFLYNMDSSK 168 (222)
Q Consensus 95 lgis~~~v~l~pGg---~~~pH~H~~a~Ei~y-Vl--~G~~~~~~v~~~~~~~~~~L~~GDv~viP~G~~H~~~N~g~~~ 168 (222)
-.+-+....+.||+ ..|||.|.+..|..| -- ++...+.+.++-++..-..++-+|++++|+=.+|.- .| ..
T Consensus 173 ~qLlmG~tvltPGg~WSSyPPHkHDrr~E~YlYf~l~~~qrV~h~mG~pdETrh~~v~n~~aVisP~wsih~g--~g-t~ 249 (276)
T PRK00924 173 CQLVMGLTELEPGSVWNTMPCHTHDRRMEVYFYFDMPEDARVFHFMGEPQETRHIVVHNEQAVISPSWSIHSG--VG-TS 249 (276)
T ss_pred ccEEEEEEEEcCCCCCCCCCCccCCCCcceEEEEEcCCCceEEecCCCccceeeEEEECCCEEECCCcceecC--cC-cc
Confidence 35777777889998 489999997677544 21 222222221111222237899999999999999988 57 77
Q ss_pred CEEEEEEEeCCCC
Q 027536 169 PALALSGLSSQNP 181 (222)
Q Consensus 169 ~a~~i~~~~s~~p 181 (222)
.-.||.++.-+|-
T Consensus 250 ~y~fiw~m~gen~ 262 (276)
T PRK00924 250 NYTFIWGMAGENQ 262 (276)
T ss_pred ccEEEEEecccCc
Confidence 8888888866553
No 79
>PF02373 JmjC: JmjC domain, hydroxylase; InterPro: IPR013129 Jumonji protein is required for neural tube formation in mice [].There is evidence of domain swapping within the jumonji family of transcription factors []. This domain is often associated with jmjN (see IPR003349 from INTERPRO) and belongs to the Cupin superfamily [].; PDB: 2YU2_A 2YU1_A 3AVR_A 3AVS_A 2OX0_B 2OQ6_B 2WWJ_A 2Q8D_A 3PDQ_A 2YBK_A ....
Probab=93.84 E-value=0.11 Score=38.75 Aligned_cols=27 Identities=22% Similarity=0.578 Sum_probs=20.8
Q ss_pred cEEEEEECCCCEEEEcCCCeeEEEecC
Q 027536 139 RLFTQQLRPGDSFVFPKGLIHFLYNMD 165 (222)
Q Consensus 139 ~~~~~~L~~GDv~viP~G~~H~~~N~g 165 (222)
+.++.+.++||.+++|+|..|+..|.|
T Consensus 79 ~~~~~~Q~~Ge~V~i~pg~~H~v~n~g 105 (114)
T PF02373_consen 79 PVYRFVQKPGEFVFIPPGAYHQVFNLG 105 (114)
T ss_dssp --EEEEEETT-EEEE-TT-EEEEEESS
T ss_pred ccccceECCCCEEEECCCceEEEEeCC
Confidence 456789999999999999999999988
No 80
>PF13759 2OG-FeII_Oxy_5: Putative 2OG-Fe(II) oxygenase; PDB: 3BVC_B 2RG4_A.
Probab=93.81 E-value=0.26 Score=36.55 Aligned_cols=71 Identities=23% Similarity=0.306 Sum_probs=34.6
Q ss_pred EEEcCCcccCCccCCCCc--EEEEEE--eCeEEEEEEecC------------------CcEEEEEECCCCEEEEcCCCee
Q 027536 102 IDIAANGIVPPHTHPRAS--EVTICL--KGALLVGFVDTL------------------GRLFTQQLRPGDSFVFPKGLIH 159 (222)
Q Consensus 102 v~l~pGg~~~pH~H~~a~--Ei~yVl--~G~~~~~~v~~~------------------~~~~~~~L~~GDv~viP~G~~H 159 (222)
....+|+...+|.|+++. =+.||- ++...+.+.+++ ...+....++||+++||.-+.|
T Consensus 5 ni~~~g~~~~~H~H~~s~~SgVyYv~~p~~~~~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~G~lvlFPs~l~H 84 (101)
T PF13759_consen 5 NIYRKGGYNEPHNHPNSWLSGVYYVQVPEGSGPLRFHDPRGSFSFGAPFDNYDQNDLNSPYYIVEPEEGDLVLFPSWLWH 84 (101)
T ss_dssp EEE-TT--EEEE--TT-SEEEEEECE--TTS-SEEEE-TTCCCGTTS----TTTTCCC-SEEEE---TTEEEEEETTSEE
T ss_pred EEeCCCCccCceECCCcCEEEEEEEECCCCCCceeeeCCCccceecccccccccCcccCceEEeCCCCCEEEEeCCCCEE
Confidence 346789999999999642 233332 233333444331 1245678899999999999999
Q ss_pred EEE-ecCCCCCEEEE
Q 027536 160 FLY-NMDSSKPALAL 173 (222)
Q Consensus 160 ~~~-N~g~~~~a~~i 173 (222)
... |.+ +++-..|
T Consensus 85 ~v~p~~~-~~~Risi 98 (101)
T PF13759_consen 85 GVPPNNS-DEERISI 98 (101)
T ss_dssp EE----S-SS-EEEE
T ss_pred eccCcCC-CCCEEEE
Confidence 985 444 4444443
No 81
>PRK12335 tellurite resistance protein TehB; Provisional
Probab=93.74 E-value=0.34 Score=42.61 Aligned_cols=69 Identities=10% Similarity=-0.032 Sum_probs=51.5
Q ss_pred CCcccCCccC-CCCcEEEEEEeCeEEEEEEecCCcE-EEEEECCC-CEEEEcCCCeeEEEecCCCCCEEEEEEE
Q 027536 106 ANGIVPPHTH-PRASEVTICLKGALLVGFVDTLGRL-FTQQLRPG-DSFVFPKGLIHFLYNMDSSKPALALSGL 176 (222)
Q Consensus 106 pGg~~~pH~H-~~a~Ei~yVl~G~~~~~~v~~~~~~-~~~~L~~G-Dv~viP~G~~H~~~N~g~~~~a~~i~~~ 176 (222)
|++...+|.| +...|.+.|++|++.+.+.++++.+ ....+.+. +.-++|++.-|.+.-.+ ++..+...|
T Consensus 20 p~~~~~~H~t~~g~~~~~~vl~G~l~~~~~de~g~~~~~~~l~~~~~~~~i~p~~wh~v~~~s--~d~~~~l~f 91 (287)
T PRK12335 20 PEMFQEKHNTKEGTWAKLTVLKGELKFYELTEDGEELSEHIFDAENQPPFIEPQAWHRIEAAS--DDLECQLSF 91 (287)
T ss_pred hHHHHhccCCCCCcceEEEEEeeeEEEEEECCCCCeeeEEEEecCCCCceeCCcceEEEEEcC--CCcEEEEEE
Confidence 7788899999 4778999999999999999887653 33456664 56579999999998543 455543333
No 82
>PRK10579 hypothetical protein; Provisional
Probab=93.61 E-value=1.1 Score=33.42 Aligned_cols=64 Identities=22% Similarity=0.156 Sum_probs=46.7
Q ss_pred EEcCCcccCCccCCCCcEEEEEEeCeEEEEEEecCCcEEEEEECCCCEEEEcCCCeeEEEecCCCCCEEEEEE
Q 027536 103 DIAANGIVPPHTHPRASEVTICLKGALLVGFVDTLGRLFTQQLRPGDSFVFPKGLIHFLYNMDSSKPALALSG 175 (222)
Q Consensus 103 ~l~pGg~~~pH~H~~a~Ei~yVl~G~~~~~~v~~~~~~~~~~L~~GDv~viP~G~~H~~~N~g~~~~a~~i~~ 175 (222)
.+.||. .+.-..+.|+.-|++|++++.+- |..-.++.++|+.|.+|.+.-..++. .+....+|.
T Consensus 29 Vm~pGe---y~F~T~~~E~MeivsG~l~V~Lp---g~~ew~~~~aG~sF~VpanssF~l~v---~~~t~Y~C~ 92 (94)
T PRK10579 29 VMAEGE---YTFSTAEPEEMTVISGALNVLLP---GATDWQVYEAGEVFNVPGHSEFHLQV---AEPTSYLCR 92 (94)
T ss_pred EEeeeE---EEEcCCCcEEEEEEeeEEEEECC---CCcccEEeCCCCEEEECCCCeEEEEE---CcceeeEEE
Confidence 345554 34455679999999999999984 33336899999999999999887764 344444443
No 83
>KOG3706 consensus Uncharacterized conserved protein [Function unknown]
Probab=93.49 E-value=0.047 Score=51.59 Aligned_cols=61 Identities=21% Similarity=0.379 Sum_probs=46.2
Q ss_pred EEEcC-Ccc-cCCccCCCCcEEEEEEeCeEEEEEEecC-------------------Cc-EEEEEECCCCEEEEcCCCee
Q 027536 102 IDIAA-NGI-VPPHTHPRASEVTICLKGALLVGFVDTL-------------------GR-LFTQQLRPGDSFVFPKGLIH 159 (222)
Q Consensus 102 v~l~p-Gg~-~~pH~H~~a~Ei~yVl~G~~~~~~v~~~-------------------~~-~~~~~L~~GDv~viP~G~~H 159 (222)
+.+.| |+. .+|||-. -+-+++=++|+=+..+..+. |+ ++...|++||++|||+|.+|
T Consensus 321 vYLTPagSqGfaPHyDd-IeaFvlQvEGrK~Wrly~P~~~~eel~l~sS~Nf~eedlgePV~e~vle~GDllYfPRG~IH 399 (629)
T KOG3706|consen 321 VYLTPAGSQGFAPHYDD-IEAFVLQVEGRKHWRLYHPTVPLEELALVSSDNFTEEDLGEPVHEFVLEPGDLLYFPRGTIH 399 (629)
T ss_pred eeecCCCCCCCCCchhh-hhhhhheeccceeeEeecCCCcHhhhhhccCCCCChhHhCCchHHhhcCCCcEEEecCccee
Confidence 44444 443 8999987 46778889999988887542 22 45678999999999999999
Q ss_pred EEEe
Q 027536 160 FLYN 163 (222)
Q Consensus 160 ~~~N 163 (222)
....
T Consensus 400 QA~t 403 (629)
T KOG3706|consen 400 QADT 403 (629)
T ss_pred eccc
Confidence 9864
No 84
>PF07847 DUF1637: Protein of unknown function (DUF1637); InterPro: IPR012864 This entry represents cysteamine dioxygenase, which is a non-heme iron protein that is involved in the biosynthesis of taurine. Requires catalytic amounts of a cofactor-like compound, such as sulphur, sulphide, selenium or methylene blue for maximal activity. 3-Aminopropanethiol (homocysteamine) and 2-mercaptoethanol can also act as substrates, but glutathione, cysteine, and cysteine ethyl- and methyl esters are not good substrates [, ]. ; GO: 0047800 cysteamine dioxygenase activity, 0055114 oxidation-reduction process
Probab=92.75 E-value=0.69 Score=39.14 Aligned_cols=83 Identities=20% Similarity=0.359 Sum_probs=60.2
Q ss_pred cccceEEEEEEEcCCcccCCccCCCCcEEEEEEeCeEEEEEEecCC----------cEEEEE------E-CCCC-EEEEc
Q 027536 93 NTMGLTMARIDIAANGIVPPHTHPRASEVTICLKGALLVGFVDTLG----------RLFTQQ------L-RPGD-SFVFP 154 (222)
Q Consensus 93 ~~lgis~~~v~l~pGg~~~pH~H~~a~Ei~yVl~G~~~~~~v~~~~----------~~~~~~------L-~~GD-v~viP 154 (222)
....+++..+-++||+.+|+|=||+-+-+.-|+.|++.+.-.|--. +....+ + .+++ .+.-|
T Consensus 40 E~~~fsi~iF~lp~g~~IPLHDHP~M~v~sKvL~Gs~~v~Syd~~~~~~~~~~~~~~~~~a~~~~d~~~~a~~~~~vL~P 119 (200)
T PF07847_consen 40 EDEDFSIGIFCLPPGAVIPLHDHPGMTVLSKVLYGSLHVKSYDWVDEPSDSIEGQRQPRLARLVVDGEMTAPSDTCVLYP 119 (200)
T ss_pred ECCCcEEEEEEeCCCCEeCCCCCCchHhhHhhEeeeEEEEEccccccccccccccccceeeEEEecceecCCCCCeEEcc
Confidence 3446789999999999999999999888999999999988765210 111111 2 2333 44556
Q ss_pred CC--CeeEEEecCCCCCEEEEEEEe
Q 027536 155 KG--LIHFLYNMDSSKPALALSGLS 177 (222)
Q Consensus 155 ~G--~~H~~~N~g~~~~a~~i~~~~ 177 (222)
.. -+|.+.+.+ +++.++-++.
T Consensus 120 ~~ggNiH~f~a~~--~p~AflDIL~ 142 (200)
T PF07847_consen 120 TSGGNIHEFTALT--GPCAFLDILA 142 (200)
T ss_pred CCCCeeEEEEeCC--CCeEEEEEcc
Confidence 54 999999764 7888888885
No 85
>COG5553 Predicted metal-dependent enzyme of the double-stranded beta helix superfamily [General function prediction only]
Probab=92.72 E-value=0.57 Score=38.44 Aligned_cols=77 Identities=22% Similarity=0.175 Sum_probs=51.7
Q ss_pred eEEEEEEEcCCcccCCccCCCCcEEEEEEeCeEEEEEEecC------CcEEEEEECCCCEEEEcCCCeeEEEecCCCCCE
Q 027536 97 LTMARIDIAANGIVPPHTHPRASEVTICLKGALLVGFVDTL------GRLFTQQLRPGDSFVFPKGLIHFLYNMDSSKPA 170 (222)
Q Consensus 97 is~~~v~l~pGg~~~pH~H~~a~Ei~yVl~G~~~~~~v~~~------~~~~~~~L~~GDv~viP~G~~H~~~N~g~~~~a 170 (222)
+++..+++.||...|+|-|. ..-++=|+.|.-+-.+..-. ..-..+.+.+|++- .-+|.+|.+.|+| ....
T Consensus 73 ltV~~~t~~PG~~~p~HnH~-~wglVgil~G~E~n~~y~~~~~~~~~P~~qdk~~apgeV~-lSpgdihsv~n~~-sdrs 149 (191)
T COG5553 73 LTVYHITLSPGVQYPPHNHL-MWGLVGILWGGETNFIYPLAGEEVDEPERQDKFAAPGEVH-LSPGDIHSVANTG-SDRS 149 (191)
T ss_pred EEEEEEEeCCCcccCCcccc-hheeeeeeecccccceecccCCCCCCcchhhhhcCcceEe-eCCCCeeeecccC-CCcc
Confidence 68889999999999999997 58888889987665443211 01113567777777 4447777777777 4433
Q ss_pred EEEEEE
Q 027536 171 LALSGL 176 (222)
Q Consensus 171 ~~i~~~ 176 (222)
-.|=++
T Consensus 150 ~aiHvy 155 (191)
T COG5553 150 GAIHVY 155 (191)
T ss_pred ceEEEE
Confidence 333344
No 86
>TIGR02466 conserved hypothetical protein. This family consists of uncharacterized proteins in Caulobacter crescentus CB15, Bdellovibrio bacteriovorus HD100, Synechococcus sp. WH 8102 (2), Silicibacter pomeroyi DSS-3 (2), and Hyphomonas neptunium ATCC 15444. The context of nearby genes differs substantially between members and does point to any specific biological role.
Probab=92.58 E-value=0.83 Score=38.62 Aligned_cols=77 Identities=18% Similarity=0.210 Sum_probs=46.2
Q ss_pred EEEEEEcCCcccCCccCCCC--cEEEEEE--eCeEEEEEEecC------------------CcEEEEEECCCCEEEEcCC
Q 027536 99 MARIDIAANGIVPPHTHPRA--SEVTICL--KGALLVGFVDTL------------------GRLFTQQLRPGDSFVFPKG 156 (222)
Q Consensus 99 ~~~v~l~pGg~~~pH~H~~a--~Ei~yVl--~G~~~~~~v~~~------------------~~~~~~~L~~GDv~viP~G 156 (222)
+-...+.+|+....|.|+++ +=+.||- .|...+.+.++. .......-++||+++||.-
T Consensus 98 ~W~ni~~~Gg~h~~H~Hp~~~lSgvyYl~~p~~~g~~~f~~p~~~~~~~~~~~~~~~~~~~~~~~~v~P~~G~lvlFPS~ 177 (201)
T TIGR02466 98 AWVNILPQGGTHSPHLHPGSVISGTYYVQTPENCGAIKFEDPRLDDMMAAPMRIPNAKRAVQRFVYVPPQEGRVLLFESW 177 (201)
T ss_pred EeEEEcCCCCccCceECCCceEEEEEEEeCCCCCCceeEecCcchhhhccccccCccccccCccEEECCCCCeEEEECCC
Confidence 44456789999999999974 2334444 222333333221 0011234589999999999
Q ss_pred CeeEEE-ecCCCCCEEEEEEEe
Q 027536 157 LIHFLY-NMDSSKPALALSGLS 177 (222)
Q Consensus 157 ~~H~~~-N~g~~~~a~~i~~~~ 177 (222)
+.|... |.+ +++-.. .+||
T Consensus 178 L~H~v~p~~~-~~~RIS-iSFN 197 (201)
T TIGR02466 178 LRHEVPPNES-EEERIS-VSFN 197 (201)
T ss_pred CceecCCCCC-CCCEEE-EEEe
Confidence 999985 444 444433 3443
No 87
>COG3508 HmgA Homogentisate 1,2-dioxygenase [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=92.13 E-value=2 Score=39.48 Aligned_cols=63 Identities=17% Similarity=0.225 Sum_probs=46.6
Q ss_pred CCccc-CCccCCCCcEEEEEEeCeEEEEEEecCCcEEEEEECCCCEEEEcCCCeeEEEecCCCCCEEEEEE
Q 027536 106 ANGIV-PPHTHPRASEVTICLKGALLVGFVDTLGRLFTQQLRPGDSFVFPKGLIHFLYNMDSSKPALALSG 175 (222)
Q Consensus 106 pGg~~-~pH~H~~a~Ei~yVl~G~~~~~~v~~~~~~~~~~L~~GDv~viP~G~~H~~~N~g~~~~a~~i~~ 175 (222)
--+|. ..-++-+.+|++++-+|++++-- +-|. .++++||+.+||+|+....+-.. +++..+.+
T Consensus 133 n~sm~~~~f~NADge~Livpq~G~l~l~t--e~G~---l~v~pgeiavIPRG~~frve~~~--~~~rgy~~ 196 (427)
T COG3508 133 NESMTKRFFRNADGELLIVPQQGELRLKT--ELGV---LEVEPGEIAVIPRGTTFRVELKD--GEARGYGC 196 (427)
T ss_pred cccchhhhhhcCCCCEEEEeecceEEEEE--eece---EEecCCcEEEeeCCceEEEEecC--CceEEEEE
Confidence 34454 45567788999999999998754 2254 69999999999999999887554 34555544
No 88
>PRK15131 mannose-6-phosphate isomerase; Provisional
Probab=91.48 E-value=1.7 Score=40.45 Aligned_cols=58 Identities=12% Similarity=0.232 Sum_probs=41.4
Q ss_pred eEEEEEEEcCCcccCCccCCCCcEEEEEEeCeEEEEEEecCCcEEEEEECCCCEEEEcCCCeeEEE
Q 027536 97 LTMARIDIAANGIVPPHTHPRASEVTICLKGALLVGFVDTLGRLFTQQLRPGDSFVFPKGLIHFLY 162 (222)
Q Consensus 97 is~~~v~l~pGg~~~pH~H~~a~Ei~yVl~G~~~~~~v~~~~~~~~~~L~~GDv~viP~G~~H~~~ 162 (222)
..+.++++..+.. ++..+..++++|++|++++.. ++. +..|++|+++++|++......
T Consensus 321 F~~~~~~l~~~~~---~~~~~~~~Illv~~G~~~i~~---~~~--~~~l~~G~~~fipa~~~~~~~ 378 (389)
T PRK15131 321 FAFSLHDLSDQPT---TLSQQSAAILFCVEGEAVLWK---GEQ--QLTLKPGESAFIAANESPVTV 378 (389)
T ss_pred cEEEEEEECCceE---EecCCCcEEEEEEcceEEEEe---CCe--EEEECCCCEEEEeCCCccEEE
Confidence 4566666655422 222346799999999999854 343 368999999999998877665
No 89
>PF14525 AraC_binding_2: AraC-binding-like domain
Probab=90.76 E-value=3.8 Score=31.96 Aligned_cols=63 Identities=24% Similarity=0.250 Sum_probs=42.0
Q ss_pred eEEEEEEEcCCcccCCccCCCCcEEEEEEeCeEEEEEEecCCcEEEEEECCCCEEEEcCCCeeEEEec
Q 027536 97 LTMARIDIAANGIVPPHTHPRASEVTICLKGALLVGFVDTLGRLFTQQLRPGDSFVFPKGLIHFLYNM 164 (222)
Q Consensus 97 is~~~v~l~pGg~~~pH~H~~a~Ei~yVl~G~~~~~~v~~~~~~~~~~L~~GDv~viP~G~~H~~~N~ 164 (222)
+.+.++.....-.+...-+.+.--+.+.++|++.+.. +++ ...+.+||+++++.+.++.....
T Consensus 34 ~~l~~~~~~~~~~vr~~~~~~~~~l~~~~~G~~~~~~---~g~--~~~~~pg~~~l~d~~~~~~~~~~ 96 (172)
T PF14525_consen 34 LRLSRISYGAQRRVRSDAPDDHYLLVLPLSGSARIEQ---GGR--EVELAPGDVVLLDPGQPYRLEFS 96 (172)
T ss_pred EEEEEEEcCCCEEEECCCCCCEEEEEEEccCCEEEEE---CCE--EEEEcCCeEEEEcCCCCEEEEEC
Confidence 4555555543332222222334556777889988877 455 58999999999999999887644
No 90
>COG3822 ABC-type sugar transport system, auxiliary component [General function prediction only]
Probab=90.62 E-value=1.2 Score=37.46 Aligned_cols=78 Identities=26% Similarity=0.388 Sum_probs=48.8
Q ss_pred EEEEcCCcccCCccCCCCcE-EEEEEeCeEEEEEEecC----------------CcEE------EEEECCCCEEEEcCCC
Q 027536 101 RIDIAANGIVPPHTHPRASE-VTICLKGALLVGFVDTL----------------GRLF------TQQLRPGDSFVFPKGL 157 (222)
Q Consensus 101 ~v~l~pGg~~~pH~H~~a~E-i~yVl~G~~~~~~v~~~----------------~~~~------~~~L~~GDv~viP~G~ 157 (222)
.....+|...|.|+|.+-.| ++-=-.|++.+.....+ |+.. ...|+||+.+-+|+|.
T Consensus 90 iM~vr~gQvtPmHrH~~k~eDiinrgggtlv~el~~~d~~~~~~~ks~vtv~~dg~r~~~~ag~~lkL~PGesitL~Pg~ 169 (225)
T COG3822 90 IMHVRPGQVTPMHRHWRKPEDIINRGGGTLVVELWNVDLVEGQDEKSDVTVPVDGCRQTHTAGSQLKLSPGESITLPPGL 169 (225)
T ss_pred eEEeccCCcCcccccccchhhhhhcCCceEEEEEeccccccCcCCCCCeEecCCCcEEEeccceeEEECCCCcEecCCCc
Confidence 35678999999999995333 22222344444443211 1111 3589999999999999
Q ss_pred eeEEEecCCCCCEEEEEEEeCCCC
Q 027536 158 IHFLYNMDSSKPALALSGLSSQNP 181 (222)
Q Consensus 158 ~H~~~N~g~~~~a~~i~~~~s~~p 181 (222)
-|+.+.- +..+++.-.++-|-
T Consensus 170 ~HsFwae---~g~vlvgEvSsvnd 190 (225)
T COG3822 170 YHSFWAE---EGGVLVGEVSSVND 190 (225)
T ss_pred eeeeeec---CCcEEEEEEeeccC
Confidence 9999843 33355555555543
No 91
>TIGR00218 manA mannose-6-phosphate isomerase, class I. The names phosphomannose isomerase and mannose-6-phosphate isomerase are synonomous. This family contains two rather deeply branched groups. One group contains an experimentally determined phosphomannose isomerase of Streptococcus mutans as well as three uncharacterized paralogous proteins of Bacillus subtilis, all at more than 50 % identity to each other, plus a more distant homolog from Archaeoglobus fulgidus. The other group contains members from E. coli, budding yeast, Borrelia burgdorferi, etc.
Probab=90.58 E-value=2.2 Score=37.97 Aligned_cols=59 Identities=22% Similarity=0.317 Sum_probs=42.2
Q ss_pred ceEEEEEEEcCCcccCCccCCCCcEEEEEEeCeEEEEEEecCCcEEEEEECCCCEEEEcCCCeeEEE
Q 027536 96 GLTMARIDIAANGIVPPHTHPRASEVTICLKGALLVGFVDTLGRLFTQQLRPGDSFVFPKGLIHFLY 162 (222)
Q Consensus 96 gis~~~v~l~pGg~~~pH~H~~a~Ei~yVl~G~~~~~~v~~~~~~~~~~L~~GDv~viP~G~~H~~~ 162 (222)
...+.++++..... ........+++|++|++++.. ++. ...|++|+.+++|++......
T Consensus 234 ~F~~~~~~~~~~~~---~~~~~~~~il~v~~G~~~i~~---~~~--~~~l~~G~~~~ipa~~~~~~i 292 (302)
T TIGR00218 234 YFSVYKWDISGKAE---FIQQQSALILSVLEGSGRIKS---GGK--TLPLKKGESFFIPAHLGPFTI 292 (302)
T ss_pred CeEEEEEEeCCcee---eccCCCcEEEEEEcceEEEEE---CCE--EEEEecccEEEEccCCccEEE
Confidence 46677777754321 112336889999999999864 333 478999999999999876654
No 92
>PF09313 DUF1971: Domain of unknown function (DUF1971); InterPro: IPR015392 This uncharacterised domain is predominantly found in bacterial Tellurite resistance proteins. ; PDB: 3BB6_C 3M70_A 3DL3_I.
Probab=90.50 E-value=3 Score=30.23 Aligned_cols=64 Identities=14% Similarity=0.039 Sum_probs=43.5
Q ss_pred CcccCCccCC-CCcEEEEEEeCeEEEEEEecCCc--EEEEEECCCCEEEEcCCCeeEEEecCCCCCEEE
Q 027536 107 NGIVPPHTHP-RASEVTICLKGALLVGFVDTLGR--LFTQQLRPGDSFVFPKGLIHFLYNMDSSKPALA 172 (222)
Q Consensus 107 Gg~~~pH~H~-~a~Ei~yVl~G~~~~~~v~~~~~--~~~~~L~~GDv~viP~G~~H~~~N~g~~~~a~~ 172 (222)
.++...|.-. ..-..+-|++|++.+...++++. .....+.+|+..+|++...|.+.-.+ .++.+
T Consensus 13 ~~l~~~H~TK~GtWg~l~Vl~G~L~f~~~~~~~~~~~~~~~~~~~~~~~i~Pq~wH~V~p~s--~D~~f 79 (82)
T PF09313_consen 13 AALLERHNTKAGTWGKLRVLEGELKFYGLDEEGEEPEEEVFIPAGQPPVIEPQQWHRVEPLS--DDLRF 79 (82)
T ss_dssp GGGGSSBCCSTTEEEEEEEEESEEEEEEESSTT-SESEEEEEETTEEEEE-TT-EEEEEESS--TT-EE
T ss_pred HHHHhhcCCCCCeEEEEEEEeeEEEEEEECCCCCceeEEEEeCCCCCceeCCCceEEEEECC--CCEEE
Confidence 3445556443 22345899999999999887542 12468999999999999999998766 44444
No 93
>PLN02288 mannose-6-phosphate isomerase
Probab=90.35 E-value=1.1 Score=41.76 Aligned_cols=58 Identities=16% Similarity=0.201 Sum_probs=40.4
Q ss_pred ceEEEEEEEcCCcccCCccCCCCcEEEEEEeCeEEEEEEecCCcEEEEEECCCCEEEEcCCC
Q 027536 96 GLTMARIDIAANGIVPPHTHPRASEVTICLKGALLVGFVDTLGRLFTQQLRPGDSFVFPKGL 157 (222)
Q Consensus 96 gis~~~v~l~pGg~~~pH~H~~a~Ei~yVl~G~~~~~~v~~~~~~~~~~L~~GDv~viP~G~ 157 (222)
..++.++++.+|.......+ ++.+|++|++|++++.. .+......|++|+++++|++.
T Consensus 333 eF~v~~~~l~~~~~~~~~~~-~gp~Illv~~G~~~i~~---~~~~~~~~l~~G~~~fv~a~~ 390 (394)
T PLN02288 333 EFEVDHCDVPPGASVVFPAV-PGPSVFLVIEGEGVLST---GSSEDGTAAKRGDVFFVPAGT 390 (394)
T ss_pred ceEEEEEEeCCCCeEeecCC-CCCEEEEEEcCEEEEec---CCccceEEEeceeEEEEeCCC
Confidence 46777888877754222213 36899999999999854 222113569999999999864
No 94
>PF11142 DUF2917: Protein of unknown function (DUF2917); InterPro: IPR021317 This bacterial family of proteins appears to be restricted to Proteobacteria.
Probab=90.29 E-value=1 Score=30.97 Aligned_cols=57 Identities=16% Similarity=0.132 Sum_probs=42.6
Q ss_pred EEEcCCcccCCccCCCCcEEEEEEeCeEEEEEEecCCcEEEEEECCCCEEEEcCCCeeEEEe
Q 027536 102 IDIAANGIVPPHTHPRASEVTICLKGALLVGFVDTLGRLFTQQLRPGDSFVFPKGLIHFLYN 163 (222)
Q Consensus 102 v~l~pGg~~~pH~H~~a~Ei~yVl~G~~~~~~v~~~~~~~~~~L~~GDv~viP~G~~H~~~N 163 (222)
+.+.||....++-.. ...+-|.+|++-++. ++....+.|++||.+.+++|.--++..
T Consensus 2 ~~L~~g~~~~lr~~~--~~~l~v~~G~vWlT~---~g~~~D~~L~~G~~l~l~~g~~vvl~a 58 (63)
T PF11142_consen 2 FELAPGETLSLRAAA--GQRLRVESGRVWLTR---EGDPDDYWLQAGDSLRLRRGGRVVLSA 58 (63)
T ss_pred EEeCCCceEEeEcCC--CcEEEEccccEEEEC---CCCCCCEEECCCCEEEeCCCCEEEEEe
Confidence 356677776666444 444999999998877 344457899999999999998877653
No 95
>KOG2757 consensus Mannose-6-phosphate isomerase [Carbohydrate transport and metabolism]
Probab=89.22 E-value=2.4 Score=39.07 Aligned_cols=74 Identities=14% Similarity=0.166 Sum_probs=53.1
Q ss_pred ceEEEEEEEcCCcccCCccCCCCcEEEEEEeCeEEEEEEecCCcEEEEEECCCCEEEEcCCCeeEEEecCCCCCEEEEEE
Q 027536 96 GLTMARIDIAANGIVPPHTHPRASEVTICLKGALLVGFVDTLGRLFTQQLRPGDSFVFPKGLIHFLYNMDSSKPALALSG 175 (222)
Q Consensus 96 gis~~~v~l~pGg~~~pH~H~~a~Ei~yVl~G~~~~~~v~~~~~~~~~~L~~GDv~viP~G~~H~~~N~g~~~~a~~i~~ 175 (222)
...+.+++++.|...-.-.-+ +.-|++|++|++++.-.+ +. ...+++||+++||+.+.-.+. .. +++...+-+
T Consensus 332 eF~v~~~~v~~g~~~~~~~~~-~~SIllv~~G~g~l~~~t--~~--~~~v~rG~V~fI~a~~~i~~~-~~-sd~~~~yrA 404 (411)
T KOG2757|consen 332 EFAVLETKVPTGESYKFPGVD-GPSILLVLKGSGILKTDT--DS--KILVNRGDVLFIPANHPIHLS-SS-SDPFLGYRA 404 (411)
T ss_pred ceeEEEeecCCCceEEeecCC-CceEEEEEecceEEecCC--CC--ceeeccCcEEEEcCCCCceee-cc-Ccceeeeec
Confidence 477888899887664333344 588999999999987632 33 479999999999999876553 33 555555544
Q ss_pred E
Q 027536 176 L 176 (222)
Q Consensus 176 ~ 176 (222)
+
T Consensus 405 f 405 (411)
T KOG2757|consen 405 F 405 (411)
T ss_pred c
Confidence 4
No 96
>PF05726 Pirin_C: Pirin C-terminal cupin domain; InterPro: IPR008778 This entry represents C-terminal domain of Pirin proteins from both eukaryotes and prokaryotes. The function of Pirin is unknown but the gene coding for this protein is known to be expressed in all tissues in the human body although it is expressed most strongly in the liver and heart. Pirin is known to be a nuclear protein, exclusively localised within the nucleoplasma and predominantly concentrated within dot-like subnuclear structures []. Pirin is composed of two structurally similar domains arranged face to face. The N-terminal domain additionally features four beta-strands, and the C-terminal domain also includes four additional -strands and a short alpha-helix. Although the two domains are similar, the C-terminal domain of Pirin differs from the N-terminal domain as it does not contain a metal binding site and its sequence does not contain the conserved metal-coordinating residues []. Pirin is confirmed to be a member of the cupin superfamily on the basis of primary sequence and structural similarity. The presence of a metal binding site in the N-terminal beta-barrel of Pirin, may be significant in its role in regulating NFI DNA replication and NF-kappaB transcription factor activity []. Pirin structure has been found to closely resemble members of the cupin superfamily. Pirin contains the two characteristic sequences of the cupin superfamily, namely PG-(X)5-HXH-(X)4-E-(X)6-G and G-(X)5-PXG-(X)2-H-(X)3-N separated by a variable stretch of 15-50 amino acids. These motifs are best conserved in the N-terminal where the conserved histidine and glutamic acid residues correspond to the metal-coordinating residues. The C-terminal domain motifs lack the metal binding residues normally associated with the cupin fold []. Pirin was identified to be a metal-binding protein [], and was found that the metal-binding residues of Pirins are highly conserved across mammals, plants, fungi, and prokaryotic organisms. Pirin acts as a cofactor for the transcription factor NFI, the regulatory mechanism of which is generally believed to require the assistance of a metal ion []. Structural data supports the hypothesis that the bound iron of Pirin may participate in this transcriptional regulation by enhancing and stabilising the formation of the p50,Bcl3,DNA complex []. Metals have been implicated directly or indirectly in the NF-kappaB family of transcription factors that control expression of a number of early response genes associated with inflammatory responses, cell growth, cell cycle progression, and neoplastic transformation []. However, most metal-dependent transcription factors are DNA-binding proteins that bind to specific sequences when the metal binds to the protein. Pirin, on the other hand, appears to function differently and bind to the transcription factor DNA complex [].; PDB: 1J1L_A 3ACL_A 2P17_A.
Probab=89.14 E-value=1.8 Score=32.30 Aligned_cols=67 Identities=19% Similarity=0.134 Sum_probs=42.3
Q ss_pred EEEEEcCCcccCCccCCCCcEEEEEEeCeEEEEEEecCCcEEEEEECCCCEEEEcCCCeeEEEecCCCCCEEEEEE
Q 027536 100 ARIDIAANGIVPPHTHPRASEVTICLKGALLVGFVDTLGRLFTQQLRPGDSFVFPKGLIHFLYNMDSSKPALALSG 175 (222)
Q Consensus 100 ~~v~l~pGg~~~pH~H~~a~Ei~yVl~G~~~~~~v~~~~~~~~~~L~~GDv~viP~G~~H~~~N~g~~~~a~~i~~ 175 (222)
..+.++||+.......+.-.-++||++|++.+ +++ ...+.+|+++++..|..-.+.+. ++++.++..
T Consensus 2 ~di~l~~g~~~~~~~~~~~~~~iyv~~G~~~v-----~~~--~~~~~~~~~~~l~~g~~i~~~a~--~~~a~~lll 68 (104)
T PF05726_consen 2 LDIKLEPGASFTLPLPPGHNAFIYVLEGSVEV-----GGE--EDPLEAGQLVVLEDGDEIELTAG--EEGARFLLL 68 (104)
T ss_dssp EEEEE-TT-EEEEEEETT-EEEEEEEESEEEE-----TTT--TEEEETTEEEEE-SECEEEEEES--SSSEEEEEE
T ss_pred EEEEECCCCEEEeecCCCCEEEEEEEECcEEE-----CCC--cceECCCcEEEECCCceEEEEEC--CCCcEEEEE
Confidence 45778888875433233346789999999765 233 15799999999996666555543 377777643
No 97
>COG2850 Uncharacterized conserved protein [Function unknown]
Probab=87.64 E-value=0.97 Score=41.58 Aligned_cols=60 Identities=23% Similarity=0.217 Sum_probs=43.4
Q ss_pred EEcCCcccCCccCCCCcEEEEEEeCeEEEEEEecC-----------------CcEEEEEECCCCEEEEcCCCeeEEEe
Q 027536 103 DIAANGIVPPHTHPRASEVTICLKGALLVGFVDTL-----------------GRLFTQQLRPGDSFVFPKGLIHFLYN 163 (222)
Q Consensus 103 ~l~pGg~~~pH~H~~a~Ei~yVl~G~~~~~~v~~~-----------------~~~~~~~L~~GDv~viP~G~~H~~~N 163 (222)
-.++||.+.+||-+. .-+++=..|+=+..+.... .-....++.|||+.|||+|..|+-..
T Consensus 125 ~a~~GGgvg~H~D~Y-DVfliQg~G~RRW~v~~~~~~~~~~~~~d~~~~~~f~~~~d~vlepGDiLYiPp~~~H~gva 201 (383)
T COG2850 125 FAAPGGGVGPHFDQY-DVFLIQGQGRRRWRVGKKCNMSTLCPHPDLLILAPFEPDIDEVLEPGDILYIPPGFPHYGVA 201 (383)
T ss_pred EecCCCccCccccch-heeEEeecccceeecCCcccccCcCCCcchhhcCCCCchhhhhcCCCceeecCCCCCcCCcc
Confidence 457899999999885 6666666666666663220 01124689999999999999999864
No 98
>PRK09391 fixK transcriptional regulator FixK; Provisional
Probab=87.55 E-value=6.9 Score=32.98 Aligned_cols=77 Identities=19% Similarity=0.124 Sum_probs=51.0
Q ss_pred ceEEEEEEEcCCcccCCccCCCCcEEEEEEeCeEEEEEEecCCcE-EEEEECCCCEEEEcCCCeeEEEecCCCCCEEEEE
Q 027536 96 GLTMARIDIAANGIVPPHTHPRASEVTICLKGALLVGFVDTLGRL-FTQQLRPGDSFVFPKGLIHFLYNMDSSKPALALS 174 (222)
Q Consensus 96 gis~~~v~l~pGg~~~pH~H~~a~Ei~yVl~G~~~~~~v~~~~~~-~~~~L~~GDv~viP~G~~H~~~N~g~~~~a~~i~ 174 (222)
+.......+++|..+-..=.+ +..+.+|++|.+.+...+++|+. ....+.+||++-+..+..+...-.- -++++++.
T Consensus 35 ~~~~~~~~~~kge~l~~~Gd~-~~~ly~I~~G~vkl~~~~~~G~e~i~~~~~~Gd~fG~~~~~~~~~~~~A-~~ds~v~~ 112 (230)
T PRK09391 35 GLVASEFSYKKGEEIYGEGEP-ADYVYQVESGAVRTYRLLSDGRRQIGAFHLPGDVFGLESGSTHRFTAEA-IVDTTVRL 112 (230)
T ss_pred cceeeeEEECCCCEEECCCCC-CCeEEEEEeCEEEEEEECCCCcEEEEEEecCCceecccCCCcCCeEEEE-cCceEEEE
Confidence 456677788888765444333 68899999999999988877763 4456789998876655443222122 35555543
No 99
>PF07172 GRP: Glycine rich protein family; InterPro: IPR010800 This family consists of glycine rich proteins. Some of them may be involved in resistance to environmental stress [].
Probab=87.46 E-value=0.5 Score=35.27 Aligned_cols=17 Identities=41% Similarity=0.426 Sum_probs=10.9
Q ss_pred chhhhHHHHHHHHHHHH
Q 027536 3 ISSKTIQLFLYSLALLL 19 (222)
Q Consensus 3 ~~~~~~~~~~~~~~~~~ 19 (222)
||||+++++.++||+++
T Consensus 1 MaSK~~llL~l~LA~lL 17 (95)
T PF07172_consen 1 MASKAFLLLGLLLAALL 17 (95)
T ss_pred CchhHHHHHHHHHHHHH
Confidence 78998776555554443
No 100
>PF00027 cNMP_binding: Cyclic nucleotide-binding domain; InterPro: IPR000595 Proteins that bind cyclic nucleotides (cAMP or cGMP) share a structural domain of about 120 residues [, , ]. The best studied of these proteins is the prokaryotic catabolite gene activator (also known as the cAMP receptor protein) (gene crp) where such a domain is known to be composed of three alpha-helices and a distinctive eight-stranded, antiparallel beta-barrel structure. There are six invariant amino acids in this domain, three of which are glycine residues that are thought to be essential for maintenance of the structural integrity of the beta-barrel. cAMP- and cGMP-dependent protein kinases (cAPK and cGPK) contain two tandem copies of the cyclic nucleotide-binding domain. The cAPK's are composed of two different subunits, a catalytic chain and a regulatory chain, which contains both copies of the domain. The cGPK's are single chain enzymes that include the two copies of the domain in their N-terminal section. Vertebrate cyclic nucleotide-gated ion-channels also contain this domain. Two such cations channels have been fully characterised, one is found in rod cells where it plays a role in visual signal transduction.; PDB: 1O7F_A 2BYV_E 3E97_A 3U10_A 2H6B_A 3SHR_A 2OZ6_A 1WGP_A 3LA2_A 3LA3_B ....
Probab=86.21 E-value=2.5 Score=29.08 Aligned_cols=48 Identities=21% Similarity=0.317 Sum_probs=33.4
Q ss_pred EEcCCcccCCccCCCCcEEEEEEeCeEEEEEEecCCcE-EEEEECCCCEE
Q 027536 103 DIAANGIVPPHTHPRASEVTICLKGALLVGFVDTLGRL-FTQQLRPGDSF 151 (222)
Q Consensus 103 ~l~pGg~~~pH~H~~a~Ei~yVl~G~~~~~~v~~~~~~-~~~~L~~GDv~ 151 (222)
.+++|..+-.- +.....+.+|++|.+.+...+.+++. ....+.+||++
T Consensus 3 ~~~~g~~i~~~-g~~~~~~~~i~~G~v~~~~~~~~~~~~~~~~~~~g~~~ 51 (91)
T PF00027_consen 3 TYKKGEVIYRQ-GDPCDHIYIILSGEVKVSSINEDGKEQIIFFLGPGDIF 51 (91)
T ss_dssp EESTTEEEEET-TSBESEEEEEEESEEEEEEETTTSEEEEEEEEETTEEE
T ss_pred EECCCCEEEeC-CCcCCEEEEEEECceEEEeceecceeeeecceeeeccc
Confidence 34555543222 22358999999999999998876653 35778888876
No 101
>PF06172 Cupin_5: Cupin superfamily (DUF985); InterPro: IPR009327 This is a family of uncharacterised proteins found in bacteria and eukaryotes.; PDB: 1ZNP_G 1XE8_B 1XE7_A 3M3I_F 3LOI_A 3LZZ_B 1YUD_D.
Probab=85.76 E-value=16 Score=29.02 Aligned_cols=84 Identities=20% Similarity=0.170 Sum_probs=58.2
Q ss_pred ceEEEEEEEcCCcccCCccCCCCcEEEEEEeC-eEEEEEEecCCcEEEEEECC----CC--EEEEcCCCeeEEEecCCCC
Q 027536 96 GLTMARIDIAANGIVPPHTHPRASEVTICLKG-ALLVGFVDTLGRLFTQQLRP----GD--SFVFPKGLIHFLYNMDSSK 168 (222)
Q Consensus 96 gis~~~v~l~pGg~~~pH~H~~a~Ei~yVl~G-~~~~~~v~~~~~~~~~~L~~----GD--v~viP~G~~H~~~N~g~~~ 168 (222)
-.+....-+.++....+|.- +++|+.+-..| .+++.+++++|+..+..|.. |+ .++||+|.-...+-.+ ..
T Consensus 40 ~~T~Iy~LL~~~~~S~~Hrv-~sdEiw~~~~G~pl~l~~i~~dg~~~~~~LG~d~~~g~~~q~vVp~G~W~aa~l~~-~~ 117 (139)
T PF06172_consen 40 ASTSIYYLLTPGEFSAWHRV-DSDEIWHFHAGDPLELHLIDPDGSYETVVLGPDLAAGERPQVVVPAGTWQAAELEP-EG 117 (139)
T ss_dssp S-EEEEEEEETTBEEEEEEE-SSEEEEEEEEES-EEEEEECTTSTEEEEEESSTTCTTEBSEEEE-TTSEEEEEECE-SS
T ss_pred cceEEEEEEcCCCCCccEEc-CCCEEEEEEcCCCEEEEEEcCCCCeEEEEECCCCCCCceEEEEECCCEEEEccccC-CC
Confidence 35666666888777766665 57999998887 78999999988876667744 43 7899999988876445 66
Q ss_pred CEEEEEEEeCCCCCc
Q 027536 169 PALALSGLSSQNPGL 183 (222)
Q Consensus 169 ~a~~i~~~~s~~pg~ 183 (222)
+-.++++.- .||+
T Consensus 118 ~y~Lvsc~V--aPGF 130 (139)
T PF06172_consen 118 DYSLVSCTV--APGF 130 (139)
T ss_dssp SEEEEEEEE--SSC-
T ss_pred CEEEEEEEE--cCCC
Confidence 666666543 3444
No 102
>PRK11753 DNA-binding transcriptional dual regulator Crp; Provisional
Probab=84.27 E-value=12 Score=30.53 Aligned_cols=54 Identities=19% Similarity=0.147 Sum_probs=38.8
Q ss_pred EEEEEEcCCcccCCccCCCCcEEEEEEeCeEEEEEEecCCc-EEEEEECCCCEEEE
Q 027536 99 MARIDIAANGIVPPHTHPRASEVTICLKGALLVGFVDTLGR-LFTQQLRPGDSFVF 153 (222)
Q Consensus 99 ~~~v~l~pGg~~~pH~H~~a~Ei~yVl~G~~~~~~v~~~~~-~~~~~L~~GDv~vi 153 (222)
+....+++|..+-..=.+ ...+.+|++|.+.+...+.+|+ .....+.+||++-.
T Consensus 20 ~~~~~~~kg~~l~~~g~~-~~~~y~V~~G~v~~~~~~~~g~~~~~~~~~~g~~~g~ 74 (211)
T PRK11753 20 CHIHKYPAKSTLIHAGEK-AETLYYIVKGSVAVLIKDEEGKEMILSYLNQGDFIGE 74 (211)
T ss_pred CeEEEeCCCCEEEeCCCC-CCeEEEEEeCEEEEEEECCCCCEEEEEEcCCCCEEee
Confidence 345677888765433333 5789999999999988776665 34467899999844
No 103
>PRK13918 CRP/FNR family transcriptional regulator; Provisional
Probab=84.22 E-value=4.9 Score=32.64 Aligned_cols=54 Identities=17% Similarity=0.202 Sum_probs=37.0
Q ss_pred EEEEcCCcccCCccCC-CCcEEEEEEeCeEEEEEEecCCcE-EEEEECCCCEEEEc
Q 027536 101 RIDIAANGIVPPHTHP-RASEVTICLKGALLVGFVDTLGRL-FTQQLRPGDSFVFP 154 (222)
Q Consensus 101 ~v~l~pGg~~~pH~H~-~a~Ei~yVl~G~~~~~~v~~~~~~-~~~~L~~GDv~viP 154 (222)
...+++|...-.---+ .+..+.+|++|.+.+...+++|+. ....+.+||++-.+
T Consensus 8 ~~~~~kg~~l~~~Gd~~~~~~~y~I~~G~vr~~~~~~~G~e~~l~~~~~Gd~~G~~ 63 (202)
T PRK13918 8 TVTYRPGAVILYPGVPGPSDMLYRVRSGLVRLHTVDDEGNALTLRYVRPGEYFGEE 63 (202)
T ss_pred eeEecCCCEEEcCCCCCCCCeEEEEEeeEEEEEEECCCCCEEEEEEecCCCeechH
Confidence 3456666554322221 257899999999999998888764 34556999987543
No 104
>PF04622 ERG2_Sigma1R: ERG2 and Sigma1 receptor like protein; InterPro: IPR006716 This family consists of the fungal C-8 sterol isomerase and mammalian sigma1 receptor. C-8 sterol isomerase (delta-8--delta-7 sterol isomerase), catalyses a reaction in ergosterol biosynthesis, which results in unsaturation at C-7 in the B ring of sterols []. Sigma 1 receptor is a low molecular mass mammalian protein located in the endoplasmic reticulum [], which interacts with endogenous steroid hormones, such as progesterone and testosterone []. It also binds the sigma ligands, which are a set of chemically unrelated drugs including haloperidol, pentazocine, and ditolylguanidine []. Sigma1 effectors are not well understood, but sigma1 agonists have been observed to affect NMDA receptor function, the alpha-adrenergic system and opioid analgesia.; GO: 0000247 C-8 sterol isomerase activity, 0006696 ergosterol biosynthetic process, 0005783 endoplasmic reticulum
Probab=82.49 E-value=4.3 Score=34.77 Aligned_cols=92 Identities=22% Similarity=0.220 Sum_probs=60.5
Q ss_pred cccCCccCCCCcEEEEEEeCeEEEEEEecCCcEEEEEECCCCEEEEcCCCeeEEEecCCCCCEEEEEEEeCC-CCCc--c
Q 027536 108 GIVPPHTHPRASEVTICLKGALLVGFVDTLGRLFTQQLRPGDSFVFPKGLIHFLYNMDSSKPALALSGLSSQ-NPGL--Q 184 (222)
Q Consensus 108 g~~~pH~H~~a~Ei~yVl~G~~~~~~v~~~~~~~~~~L~~GDv~viP~G~~H~~~N~g~~~~a~~i~~~~s~-~pg~--~ 184 (222)
|....|| |+-...|++|+..... +|+....+.++||..+.|+|......- ++++.++ -+... -|.. +
T Consensus 112 GhsGrh~---ad~y~tIL~G~~~~~~---~g~~~~evy~pGd~~~l~rg~a~~y~m---~~~tw~L-EY~RG~IP~~lpf 181 (216)
T PF04622_consen 112 GHSGRHW---ADDYFTILSGEQWAWS---PGSLEPEVYKPGDSHHLPRGEAKQYQM---PPGTWAL-EYGRGWIPSMLPF 181 (216)
T ss_pred CCCcceE---eeeEEEEEEEEEEEEc---CCCCCceEeccCCEEEecCceEEEEEe---CCCeEEE-EecCCchhhhhHH
Confidence 4455565 6778999999988765 355557899999999999999987753 2334443 34221 1211 1
Q ss_pred cchhhhhcCCCCCCHHHHHHHcCCCHHH
Q 027536 185 MTSMATFASKPPIPDEVLKKAFQITRQD 212 (222)
Q Consensus 185 ~~~~~~f~~~~~ip~~vla~af~~~~~~ 212 (222)
.+++.+|+ .++-..+-++..+...+
T Consensus 182 ~~~dt~~s---TlDf~t~~~T~~~~~~~ 206 (216)
T PF04622_consen 182 GFADTLFS---TLDFPTLYRTVYITARE 206 (216)
T ss_pred HHHHHHHh---ccchHHHHHHHHHHHHH
Confidence 23356777 58877777777766554
No 105
>PRK00924 5-keto-4-deoxyuronate isomerase; Provisional
Probab=82.22 E-value=11 Score=33.39 Aligned_cols=56 Identities=23% Similarity=0.252 Sum_probs=39.0
Q ss_pred CCCCcEE-EEEEeCeEEEEEEecCCcEEEEEECCCCEEEEcCCCeeEEEecC-CCCCEEEEEE
Q 027536 115 HPRASEV-TICLKGALLVGFVDTLGRLFTQQLRPGDSFVFPKGLIHFLYNMD-SSKPALALSG 175 (222)
Q Consensus 115 H~~a~Ei-~yVl~G~~~~~~v~~~~~~~~~~L~~GDv~viP~G~~H~~~N~g-~~~~a~~i~~ 175 (222)
.-...|+ ++.+.|++.+.+ +|+ ++.|.+.|.+++|+|.-....... ...++++...
T Consensus 70 fl~rrE~giV~lgG~~~V~v---dG~--~~~l~~~d~LYVp~G~~~v~~as~~a~~paef~i~ 127 (276)
T PRK00924 70 FLERRELGIINIGGAGTVTV---DGE--TYELGHRDALYVGKGAKEVVFASADAANPAKFYLN 127 (276)
T ss_pred ecCCcEEEEEEccceEEEEE---CCE--EEecCCCcEEEECCCCcEEEEEecCCCCCcEEEEE
Confidence 3334675 777889999997 565 356999999999999876665311 1356777543
No 106
>PF04962 KduI: KduI/IolB family; InterPro: IPR021120 The KduI/IolB family of enzymes includes 5-keto 4-deoxyuronate isomerase (KduI) and 5-deoxy-glucuronate isomerase (IolB). KduI is involved in pectin degradation by free-living soil bacteria that use pectin as a carbon source, breaking it down to 2-keto-3-deoxygluconate, which can ultimately be converted to pyruvate. KduI catalyses the fourth step in pectin degradation, namely the interconversion of 5-keto-4-deoxyuronate and 2,5-diketo-3-dexoygluconate []. KduI has a TIM-barrel fold []. IolB is one of several bacterial proteins encoded by the inositol operon (iolABCDEFGHIJ) in Bacillus subtilis that are involved in myo-inositol catabolism. The enzyme is responsible for isomerization of 5-deoxy-D-glucuronic acid by IolB to produce 2-deoxy-5-keto-D-gluconic acid []. IolBs possess a cupin-like structure.; GO: 0016861 intramolecular oxidoreductase activity, interconverting aldoses and ketoses, 0008152 metabolic process; PDB: 1YWK_B 2QJV_B 1X8M_A 1XRU_A.
Probab=81.35 E-value=37 Score=29.83 Aligned_cols=96 Identities=20% Similarity=0.199 Sum_probs=51.6
Q ss_pred cEEEEeccCCCCCccccceEEEEEEEcCCc---ccCCccCCCC--------cEEEEEE-e---CeEEEEEEecC-CcEEE
Q 027536 79 FNATLTNTKNLPGVNTMGLTMARIDIAANG---IVPPHTHPRA--------SEVTICL-K---GALLVGFVDTL-GRLFT 142 (222)
Q Consensus 79 ~~v~~~~~~~fP~l~~lgis~~~v~l~pGg---~~~pH~H~~a--------~Ei~yVl-~---G~~~~~~v~~~-~~~~~ 142 (222)
..|...-..+.+ ..-.+-+..+. .|+| ..|||.|.+. +|+.|-- . |-+.-.+.+.+ ..-..
T Consensus 135 R~V~~~i~~~~~--~~~~Lv~get~-~~~G~WsSyPPH~Hd~~~~~~e~~leEiYyf~~~p~~Gfg~q~~y~~~~~~d~~ 211 (261)
T PF04962_consen 135 RTVRNIIDPNVP--PASRLVVGETI-TPGGNWSSYPPHKHDRRMEPDETELEEIYYFRFNPPQGFGFQRVYTDDPQLDEH 211 (261)
T ss_dssp EEEEEEESTTT-----SS-EEEEEE-ETTT-EES-SEEE-CCEEEESEECTEEEEEEESSTTS-EEEEEEE-TTSSSEEE
T ss_pred EEEEEeeCCCCc--ccceEEEEEEE-eCCCccCCcCCccCCCcCCCccccceeEEEEEccCcccEEEEEEECCCCCCcEE
Confidence 445555555554 22346666666 6665 3799999962 4555542 2 33332223222 11235
Q ss_pred EEECCCCEEEEcCCCeeEEEe-cCCCCCEEEEEEEeCCC
Q 027536 143 QQLRPGDSFVFPKGLIHFLYN-MDSSKPALALSGLSSQN 180 (222)
Q Consensus 143 ~~L~~GDv~viP~G~~H~~~N-~g~~~~a~~i~~~~s~~ 180 (222)
..++-||++.+|+| -|-+.. .| -...++.++..++
T Consensus 212 ~~V~~~d~V~iP~g-yHp~~aapG--y~~Yylw~maG~~ 247 (261)
T PF04962_consen 212 YVVRNGDAVLIPSG-YHPVVAAPG--YDMYYLWVMAGEN 247 (261)
T ss_dssp EEEETTEEEEESTT-B-SEEEEEE--SSEEEEEEEESSS
T ss_pred EEEECCCEEEeCCC-CCCcCcCCC--cCcEEEEEEEcCC
Confidence 78999999999999 233332 34 5566877887666
No 107
>PLN02868 acyl-CoA thioesterase family protein
Probab=79.65 E-value=7.8 Score=35.93 Aligned_cols=53 Identities=13% Similarity=-0.026 Sum_probs=39.3
Q ss_pred EEEEEcCCcccCCccCCCCcEEEEEEeCeEEEEEEecCCcEEEEEECCCCEEEE
Q 027536 100 ARIDIAANGIVPPHTHPRASEVTICLKGALLVGFVDTLGRLFTQQLRPGDSFVF 153 (222)
Q Consensus 100 ~~v~l~pGg~~~pH~H~~a~Ei~yVl~G~~~~~~v~~~~~~~~~~L~~GDv~vi 153 (222)
....+++|..+-.-=. ....+++|++|++++...+.+++.....+++||++-.
T Consensus 32 ~~~~~~~Ge~I~~~Gd-~~~~lyiI~~G~V~v~~~~~~ge~~l~~l~~Gd~fG~ 84 (413)
T PLN02868 32 VPKRYGKGEYVVREGE-PGDGLYFIWKGEAEVSGPAEEESRPEFLLKRYDYFGY 84 (413)
T ss_pred eEEEECCCCEEEeCCC-cCceEEEEEeCEEEEEEECCCCcEEEEEeCCCCEeeh
Confidence 3456777766543333 3688999999999998877767666678899998874
No 108
>PF04962 KduI: KduI/IolB family; InterPro: IPR021120 The KduI/IolB family of enzymes includes 5-keto 4-deoxyuronate isomerase (KduI) and 5-deoxy-glucuronate isomerase (IolB). KduI is involved in pectin degradation by free-living soil bacteria that use pectin as a carbon source, breaking it down to 2-keto-3-deoxygluconate, which can ultimately be converted to pyruvate. KduI catalyses the fourth step in pectin degradation, namely the interconversion of 5-keto-4-deoxyuronate and 2,5-diketo-3-dexoygluconate []. KduI has a TIM-barrel fold []. IolB is one of several bacterial proteins encoded by the inositol operon (iolABCDEFGHIJ) in Bacillus subtilis that are involved in myo-inositol catabolism. The enzyme is responsible for isomerization of 5-deoxy-D-glucuronic acid by IolB to produce 2-deoxy-5-keto-D-gluconic acid []. IolBs possess a cupin-like structure.; GO: 0016861 intramolecular oxidoreductase activity, interconverting aldoses and ketoses, 0008152 metabolic process; PDB: 1YWK_B 2QJV_B 1X8M_A 1XRU_A.
Probab=79.24 E-value=12 Score=32.79 Aligned_cols=81 Identities=16% Similarity=0.151 Sum_probs=50.4
Q ss_pred EEEeccCCCCCccccceEEEEEEEcCCcccCCccCCCCcEE-EEEEeCeEEEEEEecCCcEEEEEECCC--------CEE
Q 027536 81 ATLTNTKNLPGVNTMGLTMARIDIAANGIVPPHTHPRASEV-TICLKGALLVGFVDTLGRLFTQQLRPG--------DSF 151 (222)
Q Consensus 81 v~~~~~~~fP~l~~lgis~~~v~l~pGg~~~pH~H~~a~Ei-~yVl~G~~~~~~v~~~~~~~~~~L~~G--------Dv~ 151 (222)
++..+.+.. +.. -+.+..+.|++|.....-.-. .|+ ++.++|++++.+ +|+. ...+... |++
T Consensus 14 ~~~i~~~~~-g~~--~~~~~~l~L~~g~~~~~~~~~--~E~~vv~l~G~~~v~~---~g~~-~~~l~~R~~vF~~~~d~l 84 (261)
T PF04962_consen 14 VYSITPENA-GWM--YMGFGVLRLEAGESLEFELER--RELGVVNLGGKATVTV---DGEE-FYELGGRESVFDGPPDAL 84 (261)
T ss_dssp EEECTCCCC-CCC--CBECCCEEEECCHCCCCCCCS--EEEEEEEESSSEEEEE---TTEE-EEEE-TTSSGGGS--EEE
T ss_pred EEEECCCcc-Ccc--ccceEEEEecCCCEEeccCCC--cEEEEEEeCCEEEEEe---CCce-EEEecccccccCCCCcEE
Confidence 444444333 333 245567888888876555333 455 777899999998 5532 4677777 999
Q ss_pred EEcCCCeeEEEecCCCCCEEEE
Q 027536 152 VFPKGLIHFLYNMDSSKPALAL 173 (222)
Q Consensus 152 viP~G~~H~~~N~g~~~~a~~i 173 (222)
++|+|.--.+...+ + +++.
T Consensus 85 Yvp~g~~~~i~a~~-~--ae~~ 103 (261)
T PF04962_consen 85 YVPRGTKVVIFAST-D--AEFA 103 (261)
T ss_dssp EE-TT--EEEEESS-T--EEEE
T ss_pred EeCCCCeEEEEEcC-C--CEEE
Confidence 99999998877643 3 5554
No 109
>COG1482 ManA Phosphomannose isomerase [Carbohydrate transport and metabolism]
Probab=77.12 E-value=10 Score=34.28 Aligned_cols=59 Identities=19% Similarity=0.237 Sum_probs=41.7
Q ss_pred ceEEEEEEEcCCcccCCccCCCCcEEEEEEeCeEEEEEEecCCcEEEEEECCCCEEEEcCCCeeEEE
Q 027536 96 GLTMARIDIAANGIVPPHTHPRASEVTICLKGALLVGFVDTLGRLFTQQLRPGDSFVFPKGLIHFLY 162 (222)
Q Consensus 96 gis~~~v~l~pGg~~~pH~H~~a~Ei~yVl~G~~~~~~v~~~~~~~~~~L~~GDv~viP~G~~H~~~ 162 (222)
..++.++++..-.. -.+. +...+++|++|++++.. +++ ...|++|+.+++|+...-+..
T Consensus 241 ~F~l~~~~i~~~~~-~~~~--~~~~il~v~eG~~~l~~---~~~--~~~l~~G~s~~ipa~~~~~~i 299 (312)
T COG1482 241 DFALYKWDISGTAE-FIKQ--ESFSILLVLEGEGTLIG---GGQ--TLKLKKGESFFIPANDGPYTI 299 (312)
T ss_pred ceEEEEEeccChhh-hccC--CCcEEEEEEcCeEEEec---CCE--EEEEcCCcEEEEEcCCCcEEE
Confidence 35666666654111 1121 26899999999999876 344 589999999999999665554
No 110
>COG3123 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=76.13 E-value=11 Score=27.56 Aligned_cols=43 Identities=26% Similarity=0.152 Sum_probs=35.1
Q ss_pred CCcEEEEEEeCeEEEEEEecCCcEEEEEECCCCEEEEcCCCeeEEE
Q 027536 117 RASEVTICLKGALLVGFVDTLGRLFTQQLRPGDSFVFPKGLIHFLY 162 (222)
Q Consensus 117 ~a~Ei~yVl~G~~~~~~v~~~~~~~~~~L~~GDv~viP~G~~H~~~ 162 (222)
.+.|+..|+.|.+.+-+.++ .-.++..+|+.|.+|.+.-...+
T Consensus 40 a~~E~Mtvv~Gal~v~lpgs---~dWq~~~~Ge~F~VpgnS~F~lq 82 (94)
T COG3123 40 AAPEEMTVVSGALTVLLPGS---DDWQVYTAGEVFNVPGNSEFDLQ 82 (94)
T ss_pred CCceEEEEEeeEEEEEcCCC---cccEEecCCceEEcCCCCeEEEE
Confidence 46899999999999988544 33689999999999998765554
No 111
>smart00100 cNMP Cyclic nucleotide-monophosphate binding domain. Catabolite gene activator protein (CAP) is a prokaryotic homologue of eukaryotic cNMP-binding domains, present in ion channels, and cNMP-dependent kinases.
Probab=74.85 E-value=18 Score=25.27 Aligned_cols=54 Identities=24% Similarity=0.191 Sum_probs=37.6
Q ss_pred EEEEEcCCcccCCccCCCCcEEEEEEeCeEEEEEEecCCc-EEEEEECCCCEEEEc
Q 027536 100 ARIDIAANGIVPPHTHPRASEVTICLKGALLVGFVDTLGR-LFTQQLRPGDSFVFP 154 (222)
Q Consensus 100 ~~v~l~pGg~~~pH~H~~a~Ei~yVl~G~~~~~~v~~~~~-~~~~~L~~GDv~viP 154 (222)
....+.+|... .+-......+.+|++|.+.+...+.+|+ .....+.+||++-..
T Consensus 18 ~~~~~~~g~~l-~~~g~~~~~~y~v~~G~v~~~~~~~~g~~~~~~~~~~g~~~g~~ 72 (120)
T smart00100 18 EPVRYPAGEVI-IRQGDVGDSFYIILSGEVRVYKVLEDGREQILGILGPGDFFGEL 72 (120)
T ss_pred eEEEeCCCCEE-EeCCCcCCcEEEEEeeEEEEEEECCCCceEEEEeecCCceechh
Confidence 34567777754 3344446889999999999987755543 456778899977543
No 112
>PHA02984 hypothetical protein; Provisional
Probab=73.98 E-value=20 Score=31.81 Aligned_cols=55 Identities=16% Similarity=0.259 Sum_probs=42.1
Q ss_pred CcEEE--EEEeCeEEEEEEecCCcEEEEEECCCCEEEEcCCCeeEEEecCCCCCEEEEEE
Q 027536 118 ASEVT--ICLKGALLVGFVDTLGRLFTQQLRPGDSFVFPKGLIHFLYNMDSSKPALALSG 175 (222)
Q Consensus 118 a~Ei~--yVl~G~~~~~~v~~~~~~~~~~L~~GDv~viP~G~~H~~~N~g~~~~a~~i~~ 175 (222)
..|.+ .+++|+..+..... ++..+..+++||.|.+.-+.-|.... . +....+++.
T Consensus 91 snEy~FvlCl~G~~~I~~~~~-~~~is~~I~kGeaf~md~~t~h~i~T-~-~knl~L~Vi 147 (286)
T PHA02984 91 SNEYMFVLCLNGKTSIECFNK-GSKITNTIKKGEAFTLNLKTKYVTTT-K-DKNLHLAVI 147 (286)
T ss_pred eccEEEEEEcCCeEEEEEecC-CceeeeEEecCceEEEEccceEEEEe-C-CCceEEEEE
Confidence 35554 45679999988664 56678999999999999999999973 3 566666554
No 113
>cd00038 CAP_ED effector domain of the CAP family of transcription factors; members include CAP (or cAMP receptor protein (CRP)), which binds cAMP, FNR (fumarate and nitrate reduction), which uses an iron-sulfur cluster to sense oxygen) and CooA, a heme containing CO sensor. In all cases binding of the effector leads to conformational changes and the ability to activate transcription. Cyclic nucleotide-binding domain similar to CAP are also present in cAMP- and cGMP-dependent protein kinases (cAPK and cGPK) and vertebrate cyclic nucleotide-gated ion-channels. Cyclic nucleotide-monophosphate binding domain; proteins that bind cyclic nucleotides (cAMP or cGMP) share a structural domain of about 120 residues; the best studied is the prokaryotic catabolite gene activator, CAP, where such a domain is known to be composed of three alpha-helices and a distinctive eight-stranded, antiparallel beta-barrel structure; three conserved glycine residues are thought to be essential for maintenance of
Probab=73.56 E-value=16 Score=25.50 Aligned_cols=53 Identities=26% Similarity=0.284 Sum_probs=36.1
Q ss_pred EEEEEcCCcccCCccCCCCcEEEEEEeCeEEEEEEecCCc-EEEEEECCCCEEEE
Q 027536 100 ARIDIAANGIVPPHTHPRASEVTICLKGALLVGFVDTLGR-LFTQQLRPGDSFVF 153 (222)
Q Consensus 100 ~~v~l~pGg~~~pH~H~~a~Ei~yVl~G~~~~~~v~~~~~-~~~~~L~~GDv~vi 153 (222)
....+.+|...-.. ......+.+|++|.+.+...+++|+ .....+.+|+++-.
T Consensus 18 ~~~~~~~g~~l~~~-~~~~~~~~~i~~G~v~~~~~~~~g~~~~~~~~~~g~~~g~ 71 (115)
T cd00038 18 EERRFPAGEVIIRQ-GDPADSLYIVLSGSVEVYKLDEDGREQIVGFLGPGDLFGE 71 (115)
T ss_pred eeeeeCCCCEEEcC-CCCCCeEEEEEeCEEEEEEECCCCcEEEEEecCCccCcCh
Confidence 44566777754222 2224789999999999988776653 44567888988744
No 114
>PRK10402 DNA-binding transcriptional activator YeiL; Provisional
Probab=72.84 E-value=13 Score=31.08 Aligned_cols=52 Identities=8% Similarity=-0.063 Sum_probs=37.1
Q ss_pred EEEcCCcccCCccCCCCcEEEEEEeCeEEEEEEecCCcE-EEEEECCCCEEEEc
Q 027536 102 IDIAANGIVPPHTHPRASEVTICLKGALLVGFVDTLGRL-FTQQLRPGDSFVFP 154 (222)
Q Consensus 102 v~l~pGg~~~pH~H~~a~Ei~yVl~G~~~~~~v~~~~~~-~~~~L~~GDv~viP 154 (222)
..+++|...-. -......+.+|++|.+.+...+.+|+. ....+.+||++-..
T Consensus 34 ~~~~kge~l~~-~G~~~~~~y~V~~G~v~v~~~~~~G~e~~~~~~~~g~~~G~~ 86 (226)
T PRK10402 34 FHFLAREYIVQ-EGQQPSYLFYLTRGRAKLYATLANGKVSLIDFFAAPCFIGEI 86 (226)
T ss_pred eeeCCCCEEEc-CCCCCceEEEEEeCEEEEEEECCCCCEeeeeecCCCCeEEee
Confidence 45666665432 233358899999999999998887763 34568999988643
No 115
>COG1482 ManA Phosphomannose isomerase [Carbohydrate transport and metabolism]
Probab=72.00 E-value=6.8 Score=35.42 Aligned_cols=21 Identities=33% Similarity=0.749 Sum_probs=19.3
Q ss_pred EEEECCCCEEEEcCCCeeEEE
Q 027536 142 TQQLRPGDSFVFPKGLIHFLY 162 (222)
Q Consensus 142 ~~~L~~GDv~viP~G~~H~~~ 162 (222)
...|+|||.+++|+|.+|...
T Consensus 159 ~v~lkpGe~~fl~Agt~HA~~ 179 (312)
T COG1482 159 RVKLKPGEAFFLPAGTPHAYL 179 (312)
T ss_pred EEecCCCCEEEecCCCceeec
Confidence 579999999999999999984
No 116
>TIGR00218 manA mannose-6-phosphate isomerase, class I. The names phosphomannose isomerase and mannose-6-phosphate isomerase are synonomous. This family contains two rather deeply branched groups. One group contains an experimentally determined phosphomannose isomerase of Streptococcus mutans as well as three uncharacterized paralogous proteins of Bacillus subtilis, all at more than 50 % identity to each other, plus a more distant homolog from Archaeoglobus fulgidus. The other group contains members from E. coli, budding yeast, Borrelia burgdorferi, etc.
Probab=71.79 E-value=2.2 Score=37.99 Aligned_cols=20 Identities=40% Similarity=0.705 Sum_probs=18.3
Q ss_pred EEEECCCCEEEEcCCCeeEE
Q 027536 142 TQQLRPGDSFVFPKGLIHFL 161 (222)
Q Consensus 142 ~~~L~~GDv~viP~G~~H~~ 161 (222)
...+++||++++|+|.+|..
T Consensus 152 ~v~v~~Gd~i~ipaGt~HA~ 171 (302)
T TIGR00218 152 RIKLKPGDFFYVPSGTPHAY 171 (302)
T ss_pred ccccCCCCEEEeCCCCcccc
Confidence 57899999999999999983
No 117
>PRK10202 ebgC cryptic beta-D-galactosidase subunit beta; Reviewed
Probab=70.50 E-value=13 Score=29.70 Aligned_cols=52 Identities=17% Similarity=0.079 Sum_probs=39.1
Q ss_pred CCccCCCCcEEEEEEeCeEEEEEEecC------------------CcEEEEEECCCCEEEEcCCCeeEEE
Q 027536 111 PPHTHPRASEVTICLKGALLVGFVDTL------------------GRLFTQQLRPGDSFVFPKGLIHFLY 162 (222)
Q Consensus 111 ~pH~H~~a~Ei~yVl~G~~~~~~v~~~------------------~~~~~~~L~~GDv~viP~G~~H~~~ 162 (222)
.+=.|.+-..+.|+++|+-.+++.... +......|++|+..++.++.+|.-.
T Consensus 58 ~~E~Hr~YiDIq~~l~G~E~i~~~~~~~~~~~~~y~~e~D~~f~~~~~~~v~l~~G~F~iffP~daH~P~ 127 (149)
T PRK10202 58 LFTGHRRYFEVHYYLQGQQKIEYAPKETLQVVEYYRDETDREYLKGCGETVEVHEGQIVICDIHEAYRFI 127 (149)
T ss_pred cccccccEEEEEEEEeCeEEEEEEEcccCccccccCcccCeeeccCCCcEEEeCCCeEEEECCcccccCC
Confidence 445678889999999999999885421 1112567888998888888888875
No 118
>PF04115 Ureidogly_hydro: Ureidoglycolate hydrolase ; InterPro: IPR007247 Ureidoglycolate hydrolase (3.5.3.19 from EC) carries out the third step in the degradation of allantoin.; GO: 0004848 ureidoglycolate hydrolase activity, 0000256 allantoin catabolic process; PDB: 1YQC_B 1XSR_A 2BDR_B 1XSQ_A.
Probab=67.55 E-value=29 Score=28.22 Aligned_cols=63 Identities=22% Similarity=0.158 Sum_probs=39.4
Q ss_pred ccCCCCcEEEEEEeCeE-EEEEEecC------CcEEEEEECCCCEEEEcCCCeeEEEecCCCCCEEEEEEE
Q 027536 113 HTHPRASEVTICLKGAL-LVGFVDTL------GRLFTQQLRPGDSFVFPKGLIHFLYNMDSSKPALALSGL 176 (222)
Q Consensus 113 H~H~~a~Ei~yVl~G~~-~~~~v~~~------~~~~~~~L~~GDv~viP~G~~H~~~N~g~~~~a~~i~~~ 176 (222)
=.|+.++|.++-+.|+. .+-++.++ .++....+.+|+.+.+-+|.-|...-.= +++..++++-
T Consensus 75 ERHp~tsQ~fiPl~~~~~~lvvVA~~~~~Pd~~~lrAF~~~~gqgV~~~~GvWH~~~~~l-~~~~~f~vv~ 144 (165)
T PF04115_consen 75 ERHPLTSQAFIPLDGSPWYLVVVAPDDDGPDPETLRAFLAPGGQGVNYHRGVWHHPLLPL-DEPADFLVVD 144 (165)
T ss_dssp EE-TTB-EEEEESBS---EEEEEEESSSS-ECCCEEEEEE-SS-EEEE-TT-EE-S-EES-SSEEEEEEEE
T ss_pred ccCCCeeEEEEECCCCccEEEEEcCCCCCCCccceEEEEEcCCEEEEECCCceeCCcccc-CCcceEEEEe
Confidence 45777899999999998 66666443 4567889999999999999999875444 4666666553
No 119
>PRK15131 mannose-6-phosphate isomerase; Provisional
Probab=66.05 E-value=6.5 Score=36.56 Aligned_cols=23 Identities=22% Similarity=0.316 Sum_probs=20.3
Q ss_pred EEEEEECCCCEEEEcCCCeeEEE
Q 027536 140 LFTQQLRPGDSFVFPKGLIHFLY 162 (222)
Q Consensus 140 ~~~~~L~~GDv~viP~G~~H~~~ 162 (222)
.....|++||.+++|+|.+|...
T Consensus 236 LN~v~l~pGeaifipAg~~HAyl 258 (389)
T PRK15131 236 LNVVKLNPGEAMFLFAETPHAYL 258 (389)
T ss_pred eeEEEeCCCCEEEeCCCCCeEEc
Confidence 34578999999999999999985
No 120
>TIGR03697 NtcA_cyano global nitrogen regulator NtcA, cyanobacterial. Members of this protein family, found in the cyanobacteria, are the global nitrogen regulator NtcA. This DNA-binding transcriptional regulator is required for expressing many different ammonia-repressible genes. The consensus NtcA-binding site is G T A N(8)T A C.
Probab=64.07 E-value=21 Score=28.47 Aligned_cols=37 Identities=24% Similarity=0.234 Sum_probs=29.2
Q ss_pred CCcEEEEEEeCeEEEEEEecCCcEE-EEEECCCCEEEE
Q 027536 117 RASEVTICLKGALLVGFVDTLGRLF-TQQLRPGDSFVF 153 (222)
Q Consensus 117 ~a~Ei~yVl~G~~~~~~v~~~~~~~-~~~L~~GDv~vi 153 (222)
....+.+|++|.+.+...+++|+.. ...+.+||++-.
T Consensus 10 ~~~~~~~i~~G~v~~~~~~~~G~e~~l~~~~~g~~~G~ 47 (193)
T TIGR03697 10 PAEKVYFLRRGAVKLSRVYESGEEITVALLRENSVFGV 47 (193)
T ss_pred CCCcEEEEEecEEEEEEeCCCCcEeeeEEccCCCEeee
Confidence 3567899999999999888877643 567899998743
No 121
>COG2731 EbgC Beta-galactosidase, beta subunit [Carbohydrate transport and metabolism]
Probab=64.05 E-value=26 Score=28.49 Aligned_cols=60 Identities=20% Similarity=0.076 Sum_probs=44.3
Q ss_pred CCcccCCccCCCCcEEEEEEeCeEEEEEEecCC--------------------cEEEEEECCCCEEEEcCCCeeEEEecC
Q 027536 106 ANGIVPPHTHPRASEVTICLKGALLVGFVDTLG--------------------RLFTQQLRPGDSFVFPKGLIHFLYNMD 165 (222)
Q Consensus 106 pGg~~~pH~H~~a~Ei~yVl~G~~~~~~v~~~~--------------------~~~~~~L~~GDv~viP~G~~H~~~N~g 165 (222)
+.....+=+|.+--.+-++++|+=.+++....+ .....+|.+|+..+|=+|.+|.-....
T Consensus 57 ~~~~~~~E~HrkYiDiqill~G~E~i~~s~~~~~~~~e~y~~e~Di~~~~~~~~e~~v~L~~G~faiFfP~e~H~P~c~~ 136 (154)
T COG2731 57 EAEEKKFELHRKYIDIQILLKGQEGIEYSPKETAQVKEDYDEEKDIIFYKGIEDESTVELNPGMFAIFFPGEPHRPGCNV 136 (154)
T ss_pred chhhcchhhhhheEEEEEEEeceeeeEEccCcCCccccccccccCEEeecCCccceEEEeCCCCEEEECCCCcccccccc
Confidence 334455667787899999999999998864321 123678999999999999999875443
No 122
>KOG1417 consensus Homogentisate 1,2-dioxygenase [Amino acid transport and metabolism]
Probab=63.68 E-value=86 Score=28.48 Aligned_cols=62 Identities=15% Similarity=0.201 Sum_probs=45.7
Q ss_pred cCCccCCCCcEEEEEEeCeEEEEEEecCCcEEEEEECCCCEEEEcCCCeeEEEecCCCCCEEEEEEEe
Q 027536 110 VPPHTHPRASEVTICLKGALLVGFVDTLGRLFTQQLRPGDSFVFPKGLIHFLYNMDSSKPALALSGLS 177 (222)
Q Consensus 110 ~~pH~H~~a~Ei~yVl~G~~~~~~v~~~~~~~~~~L~~GDv~viP~G~~H~~~N~g~~~~a~~i~~~~ 177 (222)
..--++.++.-++.--+|.+.+.- +-|| ..+.++++-+||+|.-..+.-.| .....++.++.
T Consensus 147 ~safyNsDGDFLiVPQ~G~L~I~T--EfGr---llV~P~EI~VIpqG~RFsi~v~~-~sRGYilEvYg 208 (446)
T KOG1417|consen 147 NSAFYNSDGDFLIVPQQGRLWITT--EFGR---LLVTPNEIAVIPQGIRFSIDVPG-PSRGYILEVYG 208 (446)
T ss_pred cceeecCCCCEEEecccCcEEEEe--eccc---eeecccceEEeecccEEEEecCC-CCcceEEEEec
Confidence 455667776666666677776543 3476 58999999999999998886667 77777777774
No 123
>COG0664 Crp cAMP-binding proteins - catabolite gene activator and regulatory subunit of cAMP-dependent protein kinases [Signal transduction mechanisms]
Probab=63.52 E-value=30 Score=27.53 Aligned_cols=56 Identities=20% Similarity=0.163 Sum_probs=38.8
Q ss_pred EEEEEEcCCcccCCccCCCCcEEEEEEeCeEEEEEEecCCcE-EEEEECCCCEEEEcC
Q 027536 99 MARIDIAANGIVPPHTHPRASEVTICLKGALLVGFVDTLGRL-FTQQLRPGDSFVFPK 155 (222)
Q Consensus 99 ~~~v~l~pGg~~~pH~H~~a~Ei~yVl~G~~~~~~v~~~~~~-~~~~L~~GDv~viP~ 155 (222)
.....+++|...-..--+ +.-+.+|++|.+.+...+++|+. ....+.+||+|-...
T Consensus 23 ~~~~~~~~g~~l~~~g~~-~~~~y~v~~G~v~~~~~~~~G~~~~~~~~~~g~~fg~~~ 79 (214)
T COG0664 23 LEVRKLPKGEVLFTEGEE-ADSLYIILSGIVKLYANTEDGREIILGFLGPGDFFGELA 79 (214)
T ss_pred ceeEeeCCCCEEEcCCCc-CceEEEEEEeEEEEEEECCCCcEEEEEEecCCchhhhHH
Confidence 344556666544433333 46689999999999999887753 345689999986664
No 124
>PRK11161 fumarate/nitrate reduction transcriptional regulator; Provisional
Probab=62.97 E-value=33 Score=28.50 Aligned_cols=51 Identities=14% Similarity=0.029 Sum_probs=35.1
Q ss_pred EEEcCCcccCCccCCCCcEEEEEEeCeEEEEEEecCCcE-EEEEECCCCEEEE
Q 027536 102 IDIAANGIVPPHTHPRASEVTICLKGALLVGFVDTLGRL-FTQQLRPGDSFVF 153 (222)
Q Consensus 102 v~l~pGg~~~pH~H~~a~Ei~yVl~G~~~~~~v~~~~~~-~~~~L~~GDv~vi 153 (222)
..+++|...-.- -.....+.+|++|.+.+...+++|+. ....+.+||++-.
T Consensus 40 ~~~~kge~l~~~-Gd~~~~ly~v~~G~v~~~~~~~~G~e~i~~~~~~gd~~g~ 91 (235)
T PRK11161 40 KPIQKGQTLFKA-GDELKSLYAIRSGTIKSYTITEQGDEQITGFHLAGDLVGF 91 (235)
T ss_pred eeecCCCEeECC-CCCcceEEEEeeceEEEEEECCCCCEEEEEeccCCceecc
Confidence 346666543322 22357899999999999998877764 3445689999854
No 125
>PRK15186 AraC family transcriptional regulator; Provisional
Probab=61.53 E-value=34 Score=30.41 Aligned_cols=46 Identities=9% Similarity=-0.019 Sum_probs=37.1
Q ss_pred cEEEEEEeCeEEEEEEecCCcEEEEEECCCCEEEEcCCCeeEEEecCCCCC
Q 027536 119 SEVTICLKGALLVGFVDTLGRLFTQQLRPGDSFVFPKGLIHFLYNMDSSKP 169 (222)
Q Consensus 119 ~Ei~yVl~G~~~~~~v~~~~~~~~~~L~~GDv~viP~G~~H~~~N~g~~~~ 169 (222)
.-++++.+|++.+... ++. +..+.++..+++|++..|.+.|.. .+.
T Consensus 39 ~~li~v~~G~~~i~~~--~g~--~l~i~~p~~~~~p~~~~~~~~~~~-~~~ 84 (291)
T PRK15186 39 SVLIKLTTGKISITTS--SGE--YITASGPMLIFLAKDQTIHITMEE-THE 84 (291)
T ss_pred eEEEEeccceEEEEeC--CCc--eEEeCCCeEEEEeCCcEEEEEecc-cCC
Confidence 5789999999998652 233 469999999999999999998875 444
No 126
>KOG3416 consensus Predicted nucleic acid binding protein [General function prediction only]
Probab=61.45 E-value=36 Score=26.85 Aligned_cols=65 Identities=20% Similarity=0.392 Sum_probs=44.8
Q ss_pred CCccccceEEEEEEEcCCcccCCccCCCCcEEEEEE----eCeEEEEEEecCCcEEEEEECCCCEEEEcCCCeeEEEe
Q 027536 90 PGVNTMGLTMARIDIAANGIVPPHTHPRASEVTICL----KGALLVGFVDTLGRLFTQQLRPGDSFVFPKGLIHFLYN 163 (222)
Q Consensus 90 P~l~~lgis~~~v~l~pGg~~~pH~H~~a~Ei~yVl----~G~~~~~~v~~~~~~~~~~L~~GDv~viP~G~~H~~~N 163 (222)
|+++ .+...++.+++|....-- +..|+...+ .|.+.+++.++.+. .++|||++-+-.|..-.+++
T Consensus 12 P~~k--N~~v~fIvl~~g~~tkTk---dg~~v~~~kVaD~TgsI~isvW~e~~~----~~~PGDIirLt~Gy~Si~qg 80 (134)
T KOG3416|consen 12 PGLK--NINVTFIVLEYGRATKTK---DGHEVRSCKVADETGSINISVWDEEGC----LIQPGDIIRLTGGYASIFQG 80 (134)
T ss_pred hhhh--cceEEEEEEeeceeeecc---CCCEEEEEEEecccceEEEEEecCcCc----ccCCccEEEecccchhhhcC
Confidence 6666 456667777777654322 345655444 48888898876454 78999999999998876653
No 127
>PF14801 GCD14_N: tRNA methyltransferase complex GCD14 subunit N-term; PDB: 1I9G_A.
Probab=61.34 E-value=8.3 Score=25.80 Aligned_cols=36 Identities=31% Similarity=0.377 Sum_probs=24.9
Q ss_pred EEEEEecCCcEEEEEECCCCEEEEcCCCeeEEEecC
Q 027536 130 LVGFVDTLGRLFTQQLRPGDSFVFPKGLIHFLYNMD 165 (222)
Q Consensus 130 ~~~~v~~~~~~~~~~L~~GDv~viP~G~~H~~~N~g 165 (222)
++++.|+.+|.++.+|++|..|..-+|.++.-.-.|
T Consensus 11 rVQlTD~Kgr~~Ti~L~~G~~fhThrG~i~HDdlIG 46 (54)
T PF14801_consen 11 RVQLTDPKGRKHTITLEPGGEFHTHRGAIRHDDLIG 46 (54)
T ss_dssp EEEEEETT--EEEEE--TT-EEEETTEEEEHHHHTT
T ss_pred EEEEccCCCCeeeEEECCCCeEEcCccccchhheec
Confidence 567888889999999999999999999876544455
No 128
>PF13640 2OG-FeII_Oxy_3: 2OG-Fe(II) oxygenase superfamily; PDB: 3DKQ_B 3GZE_D 3HQR_A 2Y34_A 2G1M_A 2G19_A 3OUI_A 3OUJ_A 2HBU_A 2Y33_A ....
Probab=61.26 E-value=23 Score=25.35 Aligned_cols=63 Identities=21% Similarity=0.265 Sum_probs=38.0
Q ss_pred EEEcCCcccCCccCC---CCcEEEEE--Ee-Ce-----EEEEEEec---CCcEEEEE-----ECCCCEEEEcC-CCeeEE
Q 027536 102 IDIAANGIVPPHTHP---RASEVTIC--LK-GA-----LLVGFVDT---LGRLFTQQ-----LRPGDSFVFPK-GLIHFL 161 (222)
Q Consensus 102 v~l~pGg~~~pH~H~---~a~Ei~yV--l~-G~-----~~~~~v~~---~~~~~~~~-----L~~GDv~viP~-G~~H~~ 161 (222)
....+|+...||+.. ....+.++ +. -+ +...+.+. ++...... .++|++++|+. ...|..
T Consensus 4 ~~y~~G~~~~~H~D~~~~~~~~~t~llyL~~~~~~~~GG~l~~~~~~~~~~~~~~~~~~~~~p~~g~~v~F~~~~~~H~v 83 (100)
T PF13640_consen 4 NRYPPGGFFGPHTDNSYDPHRRVTLLLYLNDPEWEFEGGELEFYPSKDSDDVSREVEDFDIVPKPGRLVIFPSDNSLHGV 83 (100)
T ss_dssp EEEETTEEEEEEESSSCCCSEEEEEEEESS-CS-HCEE--EEETTTS-TSSTCEEEGGGSEE-BTTEEEEEESCTCEEEE
T ss_pred EEECcCCEEeeeECCCCCCcceEEEEEEECCCCcccCCCEEEEeccccCCCcceEEEeccccCCCCEEEEEeCCCCeecC
Confidence 356889999999976 33444333 44 22 44444432 12211223 88999999999 999998
Q ss_pred Eec
Q 027536 162 YNM 164 (222)
Q Consensus 162 ~N~ 164 (222)
.-.
T Consensus 84 ~~v 86 (100)
T PF13640_consen 84 TPV 86 (100)
T ss_dssp EEE
T ss_pred ccc
Confidence 765
No 129
>PRK03606 ureidoglycolate hydrolase; Provisional
Probab=60.14 E-value=68 Score=26.18 Aligned_cols=62 Identities=18% Similarity=0.113 Sum_probs=47.4
Q ss_pred CccCCCCcEEEEEEeCeEEEEEEecC-----CcEEEEEECCCCEEEEcCCCeeEEEecCCCCCEEEEE
Q 027536 112 PHTHPRASEVTICLKGALLVGFVDTL-----GRLFTQQLRPGDSFVFPKGLIHFLYNMDSSKPALALS 174 (222)
Q Consensus 112 pH~H~~a~Ei~yVl~G~~~~~~v~~~-----~~~~~~~L~~GDv~viP~G~~H~~~N~g~~~~a~~i~ 174 (222)
.=.|+.++|.++-+.|+-.+-++.++ +++.....++|+.+..-+|.-|...-.= +.+..+++
T Consensus 73 mERHp~~sQafiPl~~~~~lvvVA~~~~~~~~~~raF~~~~~qgV~y~~G~WH~pl~~l-~~~~dF~v 139 (162)
T PRK03606 73 LERHPLGSQAFIPLNGRPFLVVVAPDGDGDPGTPRAFVTNGRQGVNYHRGVWHHPLLAL-GEVSDFLV 139 (162)
T ss_pred EEeCCCceEEEEECCCCEEEEEEeCCCCCCccceEEEEecCCcEEEeCCCccccccccc-CCCceEEE
Confidence 45678889999999999999888754 3466789999999999999999765332 34455533
No 130
>PHA02890 hypothetical protein; Provisional
Probab=59.23 E-value=30 Score=30.49 Aligned_cols=43 Identities=19% Similarity=0.371 Sum_probs=35.7
Q ss_pred cEEEE--EEeCeEEEEEEecCCcEEEEEECCCCEEEEcCCCeeEEE
Q 027536 119 SEVTI--CLKGALLVGFVDTLGRLFTQQLRPGDSFVFPKGLIHFLY 162 (222)
Q Consensus 119 ~Ei~y--Vl~G~~~~~~v~~~~~~~~~~L~~GDv~viP~G~~H~~~ 162 (222)
.|.+| +++|+..+.+... ++..+..+++||.|.+.-+.-|...
T Consensus 91 nEy~FVlCL~Gs~~In~~~~-d~~iS~~I~kGeaF~mdv~t~H~i~ 135 (278)
T PHA02890 91 IECFFVACIEGSCKINVNIG-DREISDHIHENQGFIMDVGLDHAID 135 (278)
T ss_pred ccEEEEEEeCCeEEEEEecC-CceeeeeeecCceEEEEccceEEEE
Confidence 56554 5679999988653 6678999999999999999999986
No 131
>KOG4281 consensus Uncharacterized conserved protein [Function unknown]
Probab=58.93 E-value=5.3 Score=34.25 Aligned_cols=40 Identities=20% Similarity=0.396 Sum_probs=35.4
Q ss_pred ceEEEEEEEcCCcccCCccCCCCcEEEEEEeCeEEEEEEe
Q 027536 96 GLTMARIDIAANGIVPPHTHPRASEVTICLKGALLVGFVD 135 (222)
Q Consensus 96 gis~~~v~l~pGg~~~pH~H~~a~Ei~yVl~G~~~~~~v~ 135 (222)
+.|+..+-++|++++|.|-||.-.-+.-++-|++.+.-.|
T Consensus 74 ~FSigiFclp~ss~IPLHdHPgM~v~sKllyGtmhVksyD 113 (236)
T KOG4281|consen 74 RFSIGIFCLPPSSVIPLHDHPGMTVLSKLLYGTMHVKSYD 113 (236)
T ss_pred ceeEEEEEcCCCCeeecCCCcchHHHHHhhhceeEeeecc
Confidence 5789999999999999999998888888999999987654
No 132
>COG3718 IolB Uncharacterized enzyme involved in inositol metabolism [Carbohydrate transport and metabolism]
Probab=57.50 E-value=88 Score=27.41 Aligned_cols=83 Identities=17% Similarity=0.173 Sum_probs=55.7
Q ss_pred cEEEEeccCCCCCccccceEEEEEEEcCCcccCCccCCCCcEEEEEEeCeEEEEEEecC----C-cEEEEEECCCCEEEE
Q 027536 79 FNATLTNTKNLPGVNTMGLTMARIDIAANGIVPPHTHPRASEVTICLKGALLVGFVDTL----G-RLFTQQLRPGDSFVF 153 (222)
Q Consensus 79 ~~v~~~~~~~fP~l~~lgis~~~v~l~pGg~~~pH~H~~a~Ei~yVl~G~~~~~~v~~~----~-~~~~~~L~~GDv~vi 153 (222)
+.+..++..+ ++... +.+..++|.+|.....-.-.+ +-++.+++|++++..-+.. | |.-.++=++-|.+++
T Consensus 14 g~v~~vtp~s-agw~Y--VGF~~~~L~~Ges~~~~~~~~-E~clV~v~Gk~~vs~~g~~f~~iG~R~SvFe~~p~~~vYv 89 (270)
T COG3718 14 GLVQDVTPES-AGWEY--VGFRLLRLAAGESATEETGDR-ERCLVLVTGKATVSAHGSTFGEIGTRMSVFERKPPDSVYV 89 (270)
T ss_pred cceEEecCCC-CCcee--EEEEEEEccCCCcccccCCCc-eEEEEEEeeeEEEeeccchHhhcccccccccCCCCCeEEe
Confidence 4455555433 45554 455667889998877766654 6667888999998874432 2 322344456799999
Q ss_pred cCCCeeEEEecC
Q 027536 154 PKGLIHFLYNMD 165 (222)
Q Consensus 154 P~G~~H~~~N~g 165 (222)
|.|....+...+
T Consensus 90 p~g~~~~vtA~t 101 (270)
T COG3718 90 PAGSAFSVTATT 101 (270)
T ss_pred cCCceEEEEeec
Confidence 999998886544
No 133
>PF04074 DUF386: Domain of unknown function (DUF386); InterPro: IPR004375 This family consists of conserved hypothetical proteins, about 150 amino acids in length, with no known function. The family is restricted to the bacteria. It includes three members in Escherichia coli (strain K12) and three in Streptococcus pneumoniae.; PDB: 1S4C_B 1JOP_B.
Probab=56.64 E-value=34 Score=27.13 Aligned_cols=53 Identities=23% Similarity=0.246 Sum_probs=33.4
Q ss_pred cCCccCCCCcEEEEEEeCeEEEEEE-ecC-------------------C-cEEEEEECCCCEEEEcCCCeeEEE
Q 027536 110 VPPHTHPRASEVTICLKGALLVGFV-DTL-------------------G-RLFTQQLRPGDSFVFPKGLIHFLY 162 (222)
Q Consensus 110 ~~pH~H~~a~Ei~yVl~G~~~~~~v-~~~-------------------~-~~~~~~L~~GDv~viP~G~~H~~~ 162 (222)
..+=.|.+-..+.|+++|+=++++. +.. + ......|++|+.++|-++.+|.-.
T Consensus 61 ~~~E~HrkyiDiq~~l~G~E~i~~~~~~~~~~~~~~yd~~~D~~f~~~~~~~~~i~l~~g~f~iffP~d~H~p~ 134 (153)
T PF04074_consen 61 RRFESHRKYIDIQYVLEGEERIGWSADIEDLEVVQPYDEEKDIAFYEDGKNESFITLKPGDFAIFFPEDAHRPG 134 (153)
T ss_dssp S-EEE-SSEEEEEEEEES-EEEEEE-S---GGGS---BTTTTBEEES--TTEEEEEE-TTEEEEE-TT--EEEE
T ss_pred cceeeeccEEEEEeeccccEEEEEEcCcccCcccccCCCCCCEEEecCCCCceEEEEcCCEEEEECCCcccccc
Confidence 4455688889999999999999983 211 1 112467999999999999999853
No 134
>COG3717 KduI 5-keto 4-deoxyuronate isomerase [Carbohydrate transport and metabolism]
Probab=56.29 E-value=65 Score=28.23 Aligned_cols=89 Identities=15% Similarity=0.202 Sum_probs=57.5
Q ss_pred ccccceEEEEEEEcCCcc---cCCccCCCCcEEEEEEe---CeEEEEEEecCCcEEEEEECCCCEEEEcCCCeeEEEecC
Q 027536 92 VNTMGLTMARIDIAANGI---VPPHTHPRASEVTICLK---GALLVGFVDTLGRLFTQQLRPGDSFVFPKGLIHFLYNMD 165 (222)
Q Consensus 92 l~~lgis~~~v~l~pGg~---~~pH~H~~a~Ei~yVl~---G~~~~~~v~~~~~~~~~~L~~GDv~viP~G~~H~~~N~g 165 (222)
+.+-.+++....++||.+ .|.|.|.|..|..+-.. -.-.+.+.++-++..-..++--+.++-|+=.+|.- .|
T Consensus 172 ~~scQL~mG~T~L~pgsvWNTMP~H~HdRRmE~YlYF~m~e~srVfH~MGqP~ETRHiv~~NEqAViSP~WSIHSG--~G 249 (278)
T COG3717 172 LESCQLSMGLTMLAPGSVWNTMPCHVHDRRMEVYLYFDMDEDSRVFHMMGQPQETRHIVMHNEQAVISPPWSIHSG--VG 249 (278)
T ss_pred hhhhhhhhcceeecCCCccccCCccccccceeEEEEecCCCcceEEEecCCCCceeEEEEeccceeeCCCceeecC--cc
Confidence 445567788889999997 69999998887743321 12222232222332345566667777788888877 56
Q ss_pred CCCCEEEEEEEeCCCCCc
Q 027536 166 SSKPALALSGLSSQNPGL 183 (222)
Q Consensus 166 ~~~~a~~i~~~~s~~pg~ 183 (222)
...-++|.+..-+|-.+
T Consensus 250 -T~~YtFIWaMaGeN~~f 266 (278)
T COG3717 250 -TANYTFIWAMAGENQDF 266 (278)
T ss_pred -ccceEEEEEeccccccc
Confidence 77788888886655433
No 135
>KOG2131 consensus Uncharacterized conserved protein, contains JmjC domain [Chromatin structure and dynamics; Signal transduction mechanisms]
Probab=55.85 E-value=13 Score=34.50 Aligned_cols=61 Identities=20% Similarity=0.251 Sum_probs=45.3
Q ss_pred EEc-CCcccCCc---cCCCCcEEEEEEeCeEEEEEEecCC-------------------------cEEEEEECCCCEEEE
Q 027536 103 DIA-ANGIVPPH---THPRASEVTICLKGALLVGFVDTLG-------------------------RLFTQQLRPGDSFVF 153 (222)
Q Consensus 103 ~l~-pGg~~~pH---~H~~a~Ei~yVl~G~~~~~~v~~~~-------------------------~~~~~~L~~GDv~vi 153 (222)
.+. .|.-.|.| +|. .-+...+.|+=+.-+..+.. +.....-++|+++++
T Consensus 203 y~Gp~gSwtp~HaDVf~s--~swS~nicG~KrWl~~pP~qe~~l~dr~gnlp~~~~~~~ld~~~~~~lei~Qepge~VFv 280 (427)
T KOG2131|consen 203 YAGPAGSWTPFHADVFHS--PSWSVNICGRKRWLLYPPEQEQTLADRYGNLPLPSWITKLDLFRGPLLEIFQEPGETVFV 280 (427)
T ss_pred EeccCCCCCccchhhhcC--CcceeeeecceeEEEeChHHhhhhhhhccCcCCccccccccccccchhhhhccCCceeec
Confidence 344 34558888 775 66778888988877776531 122345689999999
Q ss_pred cCCCeeEEEecC
Q 027536 154 PKGLIHFLYNMD 165 (222)
Q Consensus 154 P~G~~H~~~N~g 165 (222)
|.|.-|.+.|.+
T Consensus 281 PsGW~hQV~NL~ 292 (427)
T KOG2131|consen 281 PSGWHHQVLNLG 292 (427)
T ss_pred cCcccccccccc
Confidence 999999999998
No 136
>TIGR00022 uncharacterized protein, YhcH/YjgK/YiaL family. This family consists of conserved hypothetical proteins, about 150 amino acids in length. Members with limited information include YhcH, a possible sugar isomerase of sialic acid catabolism, and YjgK.
Probab=54.58 E-value=42 Score=26.37 Aligned_cols=26 Identities=15% Similarity=0.185 Sum_probs=21.1
Q ss_pred ccCCccCCCCcEEEEEEeCeEEEEEE
Q 027536 109 IVPPHTHPRASEVTICLKGALLVGFV 134 (222)
Q Consensus 109 ~~~pH~H~~a~Ei~yVl~G~~~~~~v 134 (222)
...+=.|.+-.-+.|+++|+=++++.
T Consensus 60 ~~~~E~Hr~YiDIq~~l~G~E~i~~~ 85 (142)
T TIGR00022 60 SKKAELHHRYLDIQLLLRGEENIEVG 85 (142)
T ss_pred hcchhhhhheEEEEEeecceEEEEEe
Confidence 34455677789999999999999985
No 137
>PRK09392 ftrB transcriptional activator FtrB; Provisional
Probab=53.08 E-value=38 Score=28.19 Aligned_cols=52 Identities=13% Similarity=0.134 Sum_probs=36.5
Q ss_pred EEEEcCCcccCCccCCCCcEEEEEEeCeEEEEEEecCCcEEEEEECCCCEEEE
Q 027536 101 RIDIAANGIVPPHTHPRASEVTICLKGALLVGFVDTLGRLFTQQLRPGDSFVF 153 (222)
Q Consensus 101 ~v~l~pGg~~~pH~H~~a~Ei~yVl~G~~~~~~v~~~~~~~~~~L~~GDv~vi 153 (222)
...+++|...- +-......+.+|++|.+.+.....+++..-..+.+||++-.
T Consensus 32 ~~~~~~ge~l~-~~g~~~~~~~~v~~G~v~~~~~~~~~~~~i~~~~~g~~~g~ 83 (236)
T PRK09392 32 LQRFPPGTMLI-TEGEPADFLFVVLDGLVELSASSQDRETTLAILRPVSTFIL 83 (236)
T ss_pred eeecCCCCEEE-eCCCccceEEEEEeCEEEEEEcCCCceEEEEEeCCCchhhh
Confidence 45566666543 34455689999999999998765444555577899997643
No 138
>PF10731 Anophelin: Thrombin inhibitor from mosquito; InterPro: IPR018932 Members of this family are all inhibitors of thrombin, the peptidase that is at the end of the blood coagulation cascade and which creates the clot by cleaving fibrinogen. The interaction between thrombin and fibrinogen involves two different areas of contact - via the thrombin active site and via a second substrate-binding site known as an exosite. The inhibitor acts by blocking the exosite, rather than by interacting with the active site. The inhibitors are from mosquitoes that feed on human blood and which, by inhibiting thrombin, prevent the blood from clotting and keep it flowing.
Probab=48.90 E-value=18 Score=24.81 Aligned_cols=17 Identities=35% Similarity=0.464 Sum_probs=12.2
Q ss_pred chhhhHHHHHHHHHHHH
Q 027536 3 ISSKTIQLFLYSLALLL 19 (222)
Q Consensus 3 ~~~~~~~~~~~~~~~~~ 19 (222)
||+|.+++-|++++++.
T Consensus 1 MA~Kl~vialLC~aLva 17 (65)
T PF10731_consen 1 MASKLIVIALLCVALVA 17 (65)
T ss_pred CcchhhHHHHHHHHHHH
Confidence 79998887666666553
No 139
>PRK14585 pgaD putative PGA biosynthesis protein; Provisional
Probab=47.10 E-value=22 Score=28.27 Aligned_cols=25 Identities=8% Similarity=0.082 Sum_probs=22.6
Q ss_pred CCCCHHHHHHHcCCCHHHHHHHHHh
Q 027536 195 PPIPDEVLKKAFQITRQDVSIIRKN 219 (222)
Q Consensus 195 ~~ip~~vla~af~~~~~~v~~l~~~ 219 (222)
|.++++-+|++|++++|.++++++.
T Consensus 88 ~~~~~~eLA~Sf~is~el~~qL~~~ 112 (137)
T PRK14585 88 YQYTPQEYAESLAIPDELYQQLQKS 112 (137)
T ss_pred CCCChHHHHHHcCCCHHHHHHHhcC
Confidence 4799999999999999999999864
No 140
>KOG2130 consensus Phosphatidylserine-specific receptor PtdSerR, contains JmjC domain [Chromatin structure and dynamics; Signal transduction mechanisms]
Probab=46.72 E-value=29 Score=31.66 Aligned_cols=47 Identities=19% Similarity=0.300 Sum_probs=32.9
Q ss_pred CcEEEEEECCCCEEEEcCCCeeEEEecCCCCCEEEEEEEeCCCCCccc
Q 027536 138 GRLFTQQLRPGDSFVFPKGLIHFLYNMDSSKPALALSGLSSQNPGLQM 185 (222)
Q Consensus 138 ~~~~~~~L~~GDv~viP~G~~H~~~N~g~~~~a~~i~~~~s~~pg~~~ 185 (222)
.+.+....++|+.+++|.|.-|.+.|.. ..-|+.--.-+.+|.+++-
T Consensus 260 ~kPIEc~q~pGEt~fVP~GWWHvVlNle-~TIAiTqNf~s~eNf~~Vw 306 (407)
T KOG2130|consen 260 YKPIECLQKPGETMFVPSGWWHVVLNLE-PTIAITQNFASKENFPFVW 306 (407)
T ss_pred cCCceeeecCCceEEecCCeEEEEeccC-ceeeeeeccccccCCceee
Confidence 4556778999999999999999999976 5444333333445555543
No 141
>PF13464 DUF4115: Domain of unknown function (DUF4115)
Probab=44.20 E-value=1.1e+02 Score=21.24 Aligned_cols=48 Identities=21% Similarity=0.298 Sum_probs=34.8
Q ss_pred EEeCeEEEEEEecCC-cEEEEEECCCCEEEEcCCCeeEEEecCCCCCEEEE
Q 027536 124 CLKGALLVGFVDTLG-RLFTQQLRPGDSFVFPKGLIHFLYNMDSSKPALAL 173 (222)
Q Consensus 124 Vl~G~~~~~~v~~~~-~~~~~~L~~GDv~viP~G~~H~~~N~g~~~~a~~i 173 (222)
-..|+.-+++.+.+| .++...+++||..-+..+..-.+ ..| +..++-+
T Consensus 4 ~a~~~sWv~V~d~dG~~~~~~~l~~G~~~~~~~~~~~~i-~iG-na~~v~v 52 (77)
T PF13464_consen 4 TATGDSWVEVTDADGKVLFSGTLKAGETKTFEGKEPFRI-RIG-NAGAVEV 52 (77)
T ss_pred EEeCCeEEEEEeCCCcEeeeeeeCCCcEEEEeCCCCEEE-EEe-CCCcEEE
Confidence 345888888887776 56889999999999966655554 467 6555544
No 142
>PRK14584 hmsS hemin storage system protein; Provisional
Probab=43.42 E-value=30 Score=28.10 Aligned_cols=25 Identities=16% Similarity=0.474 Sum_probs=22.7
Q ss_pred CCCCHHHHHHHcCCCHHHHHHHHHh
Q 027536 195 PPIPDEVLKKAFQITRQDVSIIRKN 219 (222)
Q Consensus 195 ~~ip~~vla~af~~~~~~v~~l~~~ 219 (222)
|.++++-+|++|+++++.++++++.
T Consensus 97 ~~l~~dElA~sF~l~~e~i~qLr~~ 121 (153)
T PRK14584 97 PDLDDDELASSFALSPELIAQLKSG 121 (153)
T ss_pred CCCChHHHHHHcCCCHHHHHHHHhC
Confidence 4799999999999999999999874
No 143
>PLN03192 Voltage-dependent potassium channel; Provisional
Probab=41.83 E-value=63 Score=32.76 Aligned_cols=52 Identities=19% Similarity=0.124 Sum_probs=34.1
Q ss_pred EEEEEEcCCcccCCccCCCCcEEEEEEeCeEEEEEEecCCcEEEEEECCCCEE
Q 027536 99 MARIDIAANGIVPPHTHPRASEVTICLKGALLVGFVDTLGRLFTQQLRPGDSF 151 (222)
Q Consensus 99 ~~~v~l~pGg~~~pH~H~~a~Ei~yVl~G~~~~~~v~~~~~~~~~~L~~GDv~ 151 (222)
+....+.||..+-.-=. .+.++.+|++|++.+...+..++..-..+++||+|
T Consensus 397 ~~~~~~~pge~I~~qge-~~~~lY~I~~G~V~i~~~~~~~e~~l~~l~~Gd~F 448 (823)
T PLN03192 397 MKAEYIPPREDVIMQNE-APDDVYIVVSGEVEIIDSEGEKERVVGTLGCGDIF 448 (823)
T ss_pred hheeeeCCCCEEEECCC-CCceEEEEEecEEEEEEecCCcceeeEEccCCCEe
Confidence 44456778775433222 35789999999999854322223345789999987
No 144
>PF13994 PgaD: PgaD-like protein
Probab=41.73 E-value=33 Score=26.95 Aligned_cols=24 Identities=25% Similarity=0.635 Sum_probs=21.7
Q ss_pred CCCHHHHHHHcCCCHHHHHHHHHh
Q 027536 196 PIPDEVLKKAFQITRQDVSIIRKN 219 (222)
Q Consensus 196 ~ip~~vla~af~~~~~~v~~l~~~ 219 (222)
.++++=+|++|++++++++++++.
T Consensus 100 ~~~~~elA~~f~l~~~~l~~lr~~ 123 (138)
T PF13994_consen 100 PVSDEELARSFGLSPEQLQQLRQA 123 (138)
T ss_pred CCCHHHHHHHcCCCHHHHHHHHhC
Confidence 489999999999999999999874
No 145
>KOG0500 consensus Cyclic nucleotide-gated cation channel CNGA1-3 and related proteins [Inorganic ion transport and metabolism; Signal transduction mechanisms]
Probab=41.09 E-value=55 Score=31.57 Aligned_cols=47 Identities=21% Similarity=0.226 Sum_probs=32.9
Q ss_pred EEEcCCcccCCccCCCCcEEEEEEeCeEEEEEEecCCcEEEEEECCCCEE
Q 027536 102 IDIAANGIVPPHTHPRASEVTICLKGALLVGFVDTLGRLFTQQLRPGDSF 151 (222)
Q Consensus 102 v~l~pGg~~~pH~H~~a~Ei~yVl~G~~~~~~v~~~~~~~~~~L~~GDv~ 151 (222)
-.+.||-.+-.-= .-+.|+.+|.+|.+.+ ++++|...-.+|++|++|
T Consensus 333 qvfSPgDyICrKG-dvgkEMyIVk~G~L~V--v~dDg~t~~~~L~~G~~F 379 (536)
T KOG0500|consen 333 QVFSPGDYICRKG-DVGKEMYIVKEGKLAV--VADDGVTVFVTLKAGSVF 379 (536)
T ss_pred eeeCCCCeEEecC-cccceEEEEEccEEEE--EecCCcEEEEEecCCcee
Confidence 3455555433322 2378999999999875 666776666899999987
No 146
>PLN02288 mannose-6-phosphate isomerase
Probab=40.93 E-value=22 Score=33.12 Aligned_cols=21 Identities=19% Similarity=0.319 Sum_probs=19.3
Q ss_pred EEEECCCCEEEEcCCCeeEEE
Q 027536 142 TQQLRPGDSFVFPKGLIHFLY 162 (222)
Q Consensus 142 ~~~L~~GDv~viP~G~~H~~~ 162 (222)
...|+|||.+++|+|.+|...
T Consensus 252 ~v~L~PGeaifl~ag~~HAYl 272 (394)
T PLN02288 252 YVKLNPGEALYLGANEPHAYL 272 (394)
T ss_pred eEecCCCCEEEecCCCCceec
Confidence 479999999999999999885
No 147
>PF13348 Y_phosphatase3C: Tyrosine phosphatase family C-terminal region; PDB: 1YWF_A 2OZ5_B.
Probab=40.88 E-value=27 Score=23.56 Aligned_cols=24 Identities=17% Similarity=0.457 Sum_probs=17.5
Q ss_pred CCHHHHHHHcCCCHHHHHHHHHhc
Q 027536 197 IPDEVLKKAFQITRQDVSIIRKNL 220 (222)
Q Consensus 197 ip~~vla~af~~~~~~v~~l~~~~ 220 (222)
=.+.-|.+.+|++++++++||+++
T Consensus 44 s~e~Yl~~~lgl~~~~i~~Lr~~l 67 (68)
T PF13348_consen 44 SVENYLREELGLSEEDIERLRERL 67 (68)
T ss_dssp SHHHHHHHT-T--HHHHHHHHHHH
T ss_pred CHHHHHHHcCCCCHHHHHHHHHHc
Confidence 346778889999999999999875
No 148
>PRK02290 3-dehydroquinate synthase; Provisional
Probab=40.61 E-value=94 Score=28.56 Aligned_cols=83 Identities=18% Similarity=0.268 Sum_probs=61.3
Q ss_pred CCcEEEEeccCCCCCccccceEEEEEEEcCCcccCCccCCCCcEEEEEEeCeEEEEEEecCCc-EEEEEECCCCEE--EE
Q 027536 77 FGFNATLTNTKNLPGVNTMGLTMARIDIAANGIVPPHTHPRASEVTICLKGALLVGFVDTLGR-LFTQQLRPGDSF--VF 153 (222)
Q Consensus 77 ~g~~v~~~~~~~fP~l~~lgis~~~v~l~pGg~~~pH~H~~a~Ei~yVl~G~~~~~~v~~~~~-~~~~~L~~GDv~--vi 153 (222)
.|..+..++.+. ++--..+.|+.++..-+...+-..+...+-.++|.--++.++.++|+ +-...|++||-+ ++
T Consensus 251 sG~eVlvVd~~G----~tR~~~VGRvKIE~RPL~lIeAe~~g~~~~viLQnaetIrlv~~dG~~vsVt~Lk~GD~VL~~~ 326 (344)
T PRK02290 251 SGDEVLVVDADG----NTREAIVGRVKIEKRPLLLIEAEYGGKRIRTILQNAETIRLVTPDGKPVSVVDLKPGDEVLGYL 326 (344)
T ss_pred CCCEEEEEeCCC----CEEEEEeeEEEEeeccEEEEEEEeCCeEEEEEEecCcEEEEECCCCCEeeeeecCCCCEEEEEe
Confidence 466666666432 12246788899988888777766677999999999999999999887 345789999954 55
Q ss_pred cCCCeeEEEe
Q 027536 154 PKGLIHFLYN 163 (222)
Q Consensus 154 P~G~~H~~~N 163 (222)
+.+--|+-..
T Consensus 327 ~~~~RHfG~~ 336 (344)
T PRK02290 327 EEAARHFGMA 336 (344)
T ss_pred cCCcccccce
Confidence 6666676543
No 149
>PF00166 Cpn10: Chaperonin 10 Kd subunit; InterPro: IPR020818 The chaperonins are `helper' molecules required for correct folding and subsequent assembly of some proteins []. These are required for normal cell growth [], and are stress-induced, acting to stabilise or protect disassembled polypeptides under heat-shock conditions. Type I chaperonins present in eubacteria, mitochondria and chloroplasts require the concerted action of 2 proteins, chaperonin 60 (cpn60) and chaperonin 10 (cpn10) []. The 10 kDa chaperonin (cpn10 - or groES in bacteria) exists as a ring-shaped oligomer of between six to eight identical subunits, while the 60 kDa chaperonin (cpn60 - or groEL in bacteria) forms a structure comprising 2 stacked rings, each ring containing 7 identical subunits []. These ring structures assemble by self-stimulation in the presence of Mg2+-ATP. The central cavity of the cylindrical cpn60 tetradecamer provides as isolated environment for protein folding whilst cpn-10 binds to cpn-60 and synchronizes the release of the folded protein in an Mg2+-ATP dependent manner []. The binding of cpn10 to cpn60 inhibits the weak ATPase activity of cpn60. Escherichia coli GroES has also been shown to bind ATP cooperatively, and with an affinity comparable to that of GroEL []. Each GroEL subunit contains three structurally distinct domains: an apical, an intermediate and an equatorial domain. The apical domain contains the binding sites for both GroES and the unfolded protein substrate. The equatorial domain contains the ATP-binding site and most of the oligomeric contacts. The intermediate domain links the apical and equatorial domains and transfers allosteric information between them. The GroEL oligomer is a tetradecamer, cylindrically shaped, that is organised in two heptameric rings stacked back to back. Each GroEL ring contains a central cavity, known as the `Anfinsen cage', that provides an isolated environment for protein folding. The identical 10 kDa subunits of GroES form a dome-like heptameric oligomer in solution. ATP binding to GroES may be important in charging the seven subunits of the interacting GroEL ring with ATP, to facilitate cooperative ATP binding and hydrolysis for substrate protein release.; GO: 0006457 protein folding, 0005737 cytoplasm; PDB: 1PF9_Q 1AON_P 1SX4_T 1SVT_R 2C7D_P 1PCQ_O 2C7C_Q 1GRU_Q 1WNR_F 1P3H_I ....
Probab=38.45 E-value=77 Score=23.07 Aligned_cols=55 Identities=20% Similarity=0.233 Sum_probs=31.0
Q ss_pred CCcccCCccCCCCcEEEEEEe-CeEEEEEEecCCcEEEEEECCCCEEEEcCCCeeEEEe
Q 027536 106 ANGIVPPHTHPRASEVTICLK-GALLVGFVDTLGRLFTQQLRPGDSFVFPKGLIHFLYN 163 (222)
Q Consensus 106 pGg~~~pH~H~~a~Ei~yVl~-G~~~~~~v~~~~~~~~~~L~~GDv~viP~G~~H~~~N 163 (222)
.+|+..|-.+........|+. |.+... .+|+.....+++||.+++|....-.+..
T Consensus 21 ~~GiiLp~~~~~~~~~G~VvaVG~G~~~---~~g~~~~~~vk~GD~Vl~~~~~g~~v~~ 76 (93)
T PF00166_consen 21 ASGIILPESAKEKPNQGKVVAVGPGRYN---ENGEEVPMDVKVGDKVLFPKYAGTEVKF 76 (93)
T ss_dssp TTSCCE-CCSSSSEEEEEEEEE-SEEET---TTSSEEETSS-TTSEEEEETTTSEEEEE
T ss_pred cceEEeccccccccceeEEEEcCCcccc---CCCcEeeeeeeeccEEeccccCceEEEE
Confidence 355555533332233444443 665543 3566556789999999999987655544
No 150
>PF06719 AraC_N: AraC-type transcriptional regulator N-terminus; InterPro: IPR009594 This entry represents the N terminus of bacterial ARAC-type transcriptional regulators. In Escherichia coli these regulate the L-arabinose operon through sensing the presence of arabinose, and when the sugar is present, transmitting this information from the arabinose-binding domains to the protein s DNA-binding domains []. This family might represent the N-terminal arm of the protein, which binds to the C-terminal DNA binding domains to hold them in a state where the protein prefers to loop and remain non-activating []. This domain is associated with the IPR000005 from INTERPRO domain.
Probab=37.45 E-value=86 Score=24.85 Aligned_cols=52 Identities=23% Similarity=0.176 Sum_probs=39.9
Q ss_pred cEEEEEEeCeEEEEEEecCCcEEEEEECCCCEEEEcCCCeeEEEe--cCCCCCEEEEEE
Q 027536 119 SEVTICLKGALLVGFVDTLGRLFTQQLRPGDSFVFPKGLIHFLYN--MDSSKPALALSG 175 (222)
Q Consensus 119 ~Ei~yVl~G~~~~~~v~~~~~~~~~~L~~GDv~viP~G~~H~~~N--~g~~~~a~~i~~ 175 (222)
.-+.+|++|+=++.+ +++ .+...+|+.++.+...+-...- .+.++|...+..
T Consensus 24 p~i~~vlQG~K~~~~---g~~--~~~Y~~g~~lv~~~~lPv~~~v~~AS~~~P~l~l~l 77 (155)
T PF06719_consen 24 PSICIVLQGSKRVHL---GDQ--VFEYDAGQYLVSSVDLPVESEVVEASPEEPYLALSL 77 (155)
T ss_pred CeEEEEEeeeEEEEE---CCc--eEEecCCcEEEecCCCcEEEEEeeccCCCCEEEEEE
Confidence 568999999999988 344 4799999999999998876543 332566666655
No 151
>PRK00364 groES co-chaperonin GroES; Reviewed
Probab=37.24 E-value=1.4e+02 Score=21.91 Aligned_cols=26 Identities=19% Similarity=0.152 Sum_probs=19.5
Q ss_pred CCcEEEEEECCCCEEEEcCCCeeEEE
Q 027536 137 LGRLFTQQLRPGDSFVFPKGLIHFLY 162 (222)
Q Consensus 137 ~~~~~~~~L~~GDv~viP~G~~H~~~ 162 (222)
+|+.....+++||.+++++..--.+.
T Consensus 51 ~G~~~~~~vk~GD~Vlf~~~~g~ev~ 76 (95)
T PRK00364 51 NGERVPLDVKVGDKVLFGKYAGTEVK 76 (95)
T ss_pred CCCEeecccCCCCEEEEcCCCCeEEE
Confidence 46666778999999999976654443
No 152
>PHA00672 hypothetical protein
Probab=36.19 E-value=2.2e+02 Score=22.60 Aligned_cols=61 Identities=16% Similarity=0.096 Sum_probs=48.2
Q ss_pred ceEEEEEEEcCCcccCCccCCCCcEEEEEEeCeEEEEEEecCCcEEEEEECCCCEEEEcCCCeeEEEe
Q 027536 96 GLTMARIDIAANGIVPPHTHPRASEVTICLKGALLVGFVDTLGRLFTQQLRPGDSFVFPKGLIHFLYN 163 (222)
Q Consensus 96 gis~~~v~l~pGg~~~pH~H~~a~Ei~yVl~G~~~~~~v~~~~~~~~~~L~~GDv~viP~G~~H~~~N 163 (222)
|+....+.++.|....=-.|. -|-+++.+|++++.. ++. .+.|+.=.++.-|+|.--..+.
T Consensus 46 GvYARei~IPkGt~LtG~~hk--f~~~ii~sG~itV~t---dge--~~rl~g~~~i~~~aG~KragyA 106 (152)
T PHA00672 46 GVYARTIRIPAGVALTGALIK--VSTVLIFSGHATVFI---GGE--AVELRGYHVIPASAGRKQAFVA 106 (152)
T ss_pred ceeEEEEeccCceeeeeeeeE--eeEEEEecccEEEEe---CCc--EEEEecceeeecCCCcccceee
Confidence 788888999999987777776 444599999999877 344 3788888888889988766654
No 153
>PF02787 CPSase_L_D3: Carbamoyl-phosphate synthetase large chain, oligomerisation domain; InterPro: IPR005480 Carbamoyl phosphate synthase (CPSase) is a heterodimeric enzyme composed of a small and a large subunit (with the exception of CPSase III, see below). CPSase catalyses the synthesis of carbamoyl phosphate from biocarbonate, ATP and glutamine (6.3.5.5 from EC) or ammonia (6.3.4.16 from EC), and represents the first committed step in pyrimidine and arginine biosynthesis in prokaryotes and eukaryotes, and in the urea cycle in most terrestrial vertebrates [, ]. CPSase has three active sites, one in the small subunit and two in the large subunit. The small subunit contains the glutamine binding site and catalyses the hydrolysis of glutamine to glutamate and ammonia. The large subunit has two homologous carboxy phosphate domains, both of which have ATP-binding sites; however, the N-terminal carboxy phosphate domain catalyses the phosphorylation of biocarbonate, while the C-terminal domain catalyses the phosphorylation of the carbamate intermediate []. The carboxy phosphate domain found duplicated in the large subunit of CPSase is also present as a single copy in the biotin-dependent enzymes acetyl-CoA carboxylase (6.4.1.2 from EC) (ACC), propionyl-CoA carboxylase (6.4.1.3 from EC) (PCCase), pyruvate carboxylase (6.4.1.1 from EC) (PC) and urea carboxylase (6.3.4.6 from EC). Most prokaryotes carry one form of CPSase that participates in both arginine and pyrimidine biosynthesis, however certain bacteria can have separate forms. The large subunit in bacterial CPSase has four structural domains: the carboxy phosphate domain 1, the oligomerisation domain, the carbamoyl phosphate domain 2 and the allosteric domain []. CPSase heterodimers from Escherichia coli contain two molecular tunnels: an ammonia tunnel and a carbamate tunnel. These inter-domain tunnels connect the three distinct active sites, and function as conduits for the transport of unstable reaction intermediates (ammonia and carbamate) between successive active sites []. The catalytic mechanism of CPSase involves the diffusion of carbamate through the interior of the enzyme from the site of synthesis within the N-terminal domain of the large subunit to the site of phosphorylation within the C-terminal domain. Eukaryotes have two distinct forms of CPSase: a mitochondrial enzyme (CPSase I) that participates in both arginine biosynthesis and the urea cycle; and a cytosolic enzyme (CPSase II) involved in pyrimidine biosynthesis. CPSase II occurs as part of a multi-enzyme complex along with aspartate transcarbamoylase and dihydroorotase; this complex is referred to as the CAD protein []. The hepatic expression of CPSase is transcriptionally regulated by glucocorticoids and/or cAMP []. There is a third form of the enzyme, CPSase III, found in fish, which uses glutamine as a nitrogen source instead of ammonia []. CPSase III is closely related to CPSase I, and is composed of a single polypeptide that may have arisen from gene fusion of the glutaminase and synthetase domains []. This entry represents the oligomerisation domain found in the large subunit of carbamoyl phosphate synthases as well as in certain other carboxy phsophate domain-containing enzymes.; GO: 0006807 nitrogen compound metabolic process; PDB: 1M6V_C 1CS0_C 1C30_E 1C3O_G 1BXR_A 1T36_E 1A9X_A 1KEE_G 1CE8_A 1JDB_H ....
Probab=34.79 E-value=42 Score=26.00 Aligned_cols=25 Identities=16% Similarity=0.395 Sum_probs=20.1
Q ss_pred CCCHHHHHHHcCCCHHHHHHHHHhc
Q 027536 196 PIPDEVLKKAFQITRQDVSIIRKNL 220 (222)
Q Consensus 196 ~ip~~vla~af~~~~~~v~~l~~~~ 220 (222)
|+++..+|+.+++++++|+++++..
T Consensus 72 GFsD~~IA~l~~~~e~~vr~~R~~~ 96 (123)
T PF02787_consen 72 GFSDRQIARLWGVSEEEVRELRKEH 96 (123)
T ss_dssp T--HHHHHHHHTS-HHHHHHHHHHH
T ss_pred CCCHHHHHhccCCCHHHHHHHHHHc
Confidence 6999999999999999999998864
No 154
>PRK13395 ureidoglycolate hydrolase; Provisional
Probab=33.94 E-value=2.7e+02 Score=22.94 Aligned_cols=64 Identities=14% Similarity=0.009 Sum_probs=47.2
Q ss_pred CccCCCCcEEEEEEeC-eEEEEEEecC-----CcEEEEEECCCCEEEEcCCCeeEEEecCCCCCEEEEEEE
Q 027536 112 PHTHPRASEVTICLKG-ALLVGFVDTL-----GRLFTQQLRPGDSFVFPKGLIHFLYNMDSSKPALALSGL 176 (222)
Q Consensus 112 pH~H~~a~Ei~yVl~G-~~~~~~v~~~-----~~~~~~~L~~GDv~viP~G~~H~~~N~g~~~~a~~i~~~ 176 (222)
.=.|+..++.+.-+.| ..++-++.++ +.........|+.+-.-+|.-|...-.= +.+..++++-
T Consensus 73 mERHp~~sQafiPl~~~~~~lvVvap~~~~~pd~~~aF~~~g~qgV~y~~GtWH~pl~~L-~~~~dF~vvd 142 (171)
T PRK13395 73 MERHPLGSQAFIPLAAVSRYAVVVAPAGEFRPDEMRAFLAEGWQGVNYAKGVWHHPLLAL-DAVSDFVVVD 142 (171)
T ss_pred EEECCCceEEEEECCCCCCEEEEEccCCCCCCCceEEEEecCCcEEEeCCCccccccccc-CCCccEEEEe
Confidence 3457878999999999 7777777543 3466789999999999999999875443 4455555543
No 155
>PF01987 AIM24: Mitochondrial biogenesis AIM24; InterPro: IPR002838 The proteins in this family have no known function.; PDB: 1PG6_A 1YOX_D.
Probab=32.26 E-value=88 Score=25.96 Aligned_cols=43 Identities=19% Similarity=0.293 Sum_probs=34.0
Q ss_pred cEEEEEEeCeEEEEEEecCCcEEEEEECCCCEEEEcCCCeeEEE
Q 027536 119 SEVTICLKGALLVGFVDTLGRLFTQQLRPGDSFVFPKGLIHFLY 162 (222)
Q Consensus 119 ~Ei~yVl~G~~~~~~v~~~~~~~~~~L~~GDv~viP~G~~H~~~ 162 (222)
.-+..-++|++.+.+.. .|.++..+|.+|+-+++.++.+-.+.
T Consensus 130 g~~~~~l~G~G~v~l~~-~G~i~~i~L~~ge~~~Vd~~~lVA~~ 172 (215)
T PF01987_consen 130 GLFMLKLSGRGTVFLSG-YGAIYEIDLAPGEEIIVDPGHLVAWS 172 (215)
T ss_dssp -EEEEEEESSCEEEEEE-CCSEEEEEEE-EEEEEEEGGGEEEEE
T ss_pred CcEEEEEEEEEEEEEEe-CCcEEEEEccCCceEEEcCCCEEEEC
Confidence 34456688999988866 48889999999999999999888775
No 156
>KOG0498 consensus K+-channel ERG and related proteins, contain PAS/PAC sensor domain [Inorganic ion transport and metabolism; Signal transduction mechanisms]
Probab=32.23 E-value=79 Score=31.99 Aligned_cols=48 Identities=21% Similarity=0.302 Sum_probs=34.0
Q ss_pred EEcCCcccCCccCCCCcEEEEEEeCeEEEEEEecCCcEEEEEECCCCEE
Q 027536 103 DIAANGIVPPHTHPRASEVTICLKGALLVGFVDTLGRLFTQQLRPGDSF 151 (222)
Q Consensus 103 ~l~pGg~~~pH~H~~a~Ei~yVl~G~~~~~~v~~~~~~~~~~L~~GDv~ 151 (222)
.+.||..+-..=.+ -.|+.+|++|++.+.-.+..+......|++||.+
T Consensus 446 ~f~pge~iireGd~-v~~myFI~rG~le~~~~~~g~~~~~~~L~~Gd~~ 493 (727)
T KOG0498|consen 446 YFTPGEYIIREGDP-VTDMYFIVRGSLESITTDGGGFFVVAILGPGDFF 493 (727)
T ss_pred ccCCCCeEEecCCc-cceeEEEEeeeEEEEEccCCceEEEEEecCCCcc
Confidence 45566665555566 4999999999997654332233456899999988
No 157
>KOG1356 consensus Putative transcription factor 5qNCA, contains JmjC domain [Transcription]
Probab=31.76 E-value=18 Score=36.84 Aligned_cols=57 Identities=23% Similarity=0.209 Sum_probs=36.7
Q ss_pred EcCCcccCCccCCCCcEEEEEEeCe---E--EEEEEecCCcEEEEEECCCCEEEEcCCCeeEEEecC
Q 027536 104 IAANGIVPPHTHPRASEVTICLKGA---L--LVGFVDTLGRLFTQQLRPGDSFVFPKGLIHFLYNMD 165 (222)
Q Consensus 104 l~pGg~~~pH~H~~a~Ei~yVl~G~---~--~~~~v~~~~~~~~~~L~~GDv~viP~G~~H~~~N~g 165 (222)
.+-|..+++-+||-..+=.|.-++- + ++|+ +-.+..-..||.++||+|.+|.++|.-
T Consensus 762 ~E~~~~~~~v~hPIhDQS~YLd~~lr~RLkeEyGV-----e~WtfvQ~LGdAVfIPAGaPHQVrNLk 823 (889)
T KOG1356|consen 762 KEQGHEVPKVHHPIHDQSWYLDRYLRRRLKEEYGV-----EPWTFVQFLGDAVFIPAGAPHQVRNLK 823 (889)
T ss_pred HHhcCCCCcccCCCcccceeccHHHHHHHHHHhCC-----CccchhhcccceEEecCCCcHHhhhhh
Confidence 3345556667788656555654432 1 1222 113566678999999999999999875
No 158
>COG1741 Pirin-related protein [General function prediction only]
Probab=30.16 E-value=3.9e+02 Score=23.68 Aligned_cols=42 Identities=14% Similarity=0.147 Sum_probs=30.3
Q ss_pred CCCCccccceEEEEEEEcCCcccCCccCCCCcEEEEEEeCeEEE
Q 027536 88 NLPGVNTMGLTMARIDIAANGIVPPHTHPRASEVTICLKGALLV 131 (222)
Q Consensus 88 ~fP~l~~lgis~~~v~l~pGg~~~pH~H~~a~Ei~yVl~G~~~~ 131 (222)
..|.-... +.+..+.+++|+....+ =..-.-++||++|++.+
T Consensus 165 ~~pv~~~~-~~~~dl~l~~g~~~~l~-~~~~~~~l~v~~G~l~v 206 (276)
T COG1741 165 SSPVRQDS-LHYVDLRLEAGARLQLP-PAGRRAYLYVIEGTLEV 206 (276)
T ss_pred ccccccce-eEEEEEEeCCCceEecC-CCCceEEEEEEEeEEEE
Confidence 44554444 77888899999988777 22235679999998876
No 159
>PF01959 DHQS: 3-dehydroquinate synthase (EC 4.6.1.3); InterPro: IPR002812 3-Dehydroquinate synthase (4.2.3.4 from EC) is an enzyme in the common pathway of aromatic amino acid biosynthesis that catalyses the conversion of 3-deoxy-D-arabino-heptulosonic acid 7-phosphate (DAHP) into 3-dehydroquinic acid []. This synthesis of aromatic amino acids is an essential metabolic function for most prokaryotic as well as lower eukaryotic cells, including plants. The pathway is absent in humans; therefore, DHQS represents a potential target for the development of novel and selective antimicrobial agents. Owing to the threat posed by the spread of pathogenic bacteria resistant to many currently used antimicrobial drugs, there is clearly a need to develop new anti-infective drugs acting at novel targets. A further potential use for DHQS inhibitors is as herbicides [].; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process
Probab=30.06 E-value=1.7e+02 Score=27.01 Aligned_cols=84 Identities=17% Similarity=0.273 Sum_probs=61.0
Q ss_pred CCcEEEEeccCCCCCccccceEEEEEEEcCCcccCCccCCCCcEEEEEEeCeEEEEEEecCCcE-EEEEECCCCEE--EE
Q 027536 77 FGFNATLTNTKNLPGVNTMGLTMARIDIAANGIVPPHTHPRASEVTICLKGALLVGFVDTLGRL-FTQQLRPGDSF--VF 153 (222)
Q Consensus 77 ~g~~v~~~~~~~fP~l~~lgis~~~v~l~pGg~~~pH~H~~a~Ei~yVl~G~~~~~~v~~~~~~-~~~~L~~GDv~--vi 153 (222)
.|..+..++.+. ++--..+.|+.++..-+...+-..+..++-.++|.--++.++.++|+. -...|++||-+ ++
T Consensus 261 sG~~VlvVd~~G----~tR~~~VGRvKIE~RPLllIeA~~~g~~~svilQnaetIRlv~p~G~~vsVt~Lk~GD~vL~~~ 336 (354)
T PF01959_consen 261 SGDEVLVVDADG----RTRTAIVGRVKIERRPLLLIEAEADGKRISVILQNAETIRLVGPDGEPVSVTELKPGDEVLVYL 336 (354)
T ss_pred CCCEEEEEeCCC----CEEEEEeeEEEEeecceEEEEEEeCCeEEEEEEecCcEEEEECCCCCEeeeeecCCCCEEEEEe
Confidence 366666665432 112467888888888777666666789999999999999999998873 45789999955 56
Q ss_pred cCCCeeEEEec
Q 027536 154 PKGLIHFLYNM 164 (222)
Q Consensus 154 P~G~~H~~~N~ 164 (222)
..+--|+-+-.
T Consensus 337 ~~~~RHfG~~I 347 (354)
T PF01959_consen 337 EEAGRHFGMKI 347 (354)
T ss_pred cCCCcccceEe
Confidence 77777765543
No 160
>PF15240 Pro-rich: Proline-rich
Probab=29.50 E-value=38 Score=28.20 Aligned_cols=11 Identities=45% Similarity=0.579 Sum_probs=4.6
Q ss_pred hHHHHHHHHHHH
Q 027536 7 TIQLFLYSLALL 18 (222)
Q Consensus 7 ~~~~~~~~~~~~ 18 (222)
||+ ||++.|||
T Consensus 1 MLl-VLLSvALL 11 (179)
T PF15240_consen 1 MLL-VLLSVALL 11 (179)
T ss_pred Chh-HHHHHHHH
Confidence 455 34334333
No 161
>KOG1633 consensus F-box protein JEMMA and related proteins with JmjC, PHD, F-box and LRR domains [Chromatin structure and dynamics]
Probab=29.16 E-value=67 Score=32.73 Aligned_cols=72 Identities=14% Similarity=0.167 Sum_probs=45.0
Q ss_pred EEEEEEcCCccc-CCccCCCCcEEEEEEeCeEEEEEE----------------ecCCcEEEEEECCCCEEEEcCCCeeEE
Q 027536 99 MARIDIAANGIV-PPHTHPRASEVTICLKGALLVGFV----------------DTLGRLFTQQLRPGDSFVFPKGLIHFL 161 (222)
Q Consensus 99 ~~~v~l~pGg~~-~pH~H~~a~Ei~yVl~G~~~~~~v----------------~~~~~~~~~~L~~GDv~viP~G~~H~~ 161 (222)
+.-+.+++||-. --|.+. ...++|-+.++..---. +.-.+-+.-.|++|+.++||.|.+|..
T Consensus 138 Ytdfhidfggtsvwyhil~-G~K~f~lI~pt~~nl~~ye~w~~s~~q~~~ffGd~VdkC~~~~l~~g~T~~iPsGwIhAV 216 (776)
T KOG1633|consen 138 YTDFHIDFGGTSVWYHILA-GEKTFYLIPPTCENLELYECWESSTPQDEIFFGDCVDKCYKCILKQGQTLFIPSGWIHAV 216 (776)
T ss_pred ccccccCCCCcchhhhhhc-cccceeeeCCcccchhhhhhhhhcccccccccCCccceeEEEEeccCceEecccceeEee
Confidence 334556666654 346665 47777777766542111 111233467899999999999999999
Q ss_pred EecCCCCCEEE
Q 027536 162 YNMDSSKPALA 172 (222)
Q Consensus 162 ~N~g~~~~a~~ 172 (222)
...- +.-+..
T Consensus 217 ~Tp~-d~l~fg 226 (776)
T KOG1633|consen 217 LTPT-DCLVFG 226 (776)
T ss_pred ecCc-chheec
Confidence 8654 433333
No 162
>cd00320 cpn10 Chaperonin 10 Kd subunit (cpn10 or GroES); Cpn10 cooperates with chaperonin 60 (cpn60 or GroEL), an ATPase, to assist the folding and assembly of proteins and is found in eubacterial cytosol, as well as in the matrix of mitochondria and chloroplasts. It forms heptameric rings with a dome-like structure, forming a lid to the large cavity of the tetradecameric cpn60 cylinder and thereby tightly regulating release and binding of proteins to the cpn60 surface.
Probab=28.40 E-value=1.9e+02 Score=21.06 Aligned_cols=26 Identities=23% Similarity=0.261 Sum_probs=19.1
Q ss_pred CCcEEEEEECCCCEEEEcCCCeeEEE
Q 027536 137 LGRLFTQQLRPGDSFVFPKGLIHFLY 162 (222)
Q Consensus 137 ~~~~~~~~L~~GDv~viP~G~~H~~~ 162 (222)
+|+.....++.||.+++++...-.+.
T Consensus 50 ~g~~~~~~vk~GD~Vl~~~~~g~~v~ 75 (93)
T cd00320 50 NGERVPLSVKVGDKVLFPKYAGTEVK 75 (93)
T ss_pred CCCCccccccCCCEEEECCCCceEEE
Confidence 35545678999999999987654443
No 163
>PF13384 HTH_23: Homeodomain-like domain; PDB: 2X48_C.
Probab=27.33 E-value=73 Score=19.76 Aligned_cols=25 Identities=16% Similarity=0.077 Sum_probs=18.7
Q ss_pred CCCHHHHHHHcCCCHHHHHHHHHhc
Q 027536 196 PIPDEVLKKAFQITRQDVSIIRKNL 220 (222)
Q Consensus 196 ~ip~~vla~af~~~~~~v~~l~~~~ 220 (222)
+.+..-+++.+|++..+|.+..+.|
T Consensus 17 G~s~~~ia~~lgvs~~Tv~~w~kr~ 41 (50)
T PF13384_consen 17 GWSIREIAKRLGVSRSTVYRWIKRY 41 (50)
T ss_dssp T--HHHHHHHHTS-HHHHHHHHT--
T ss_pred CCCHHHHHHHHCcCHHHHHHHHHHc
Confidence 6888899999999999999998876
No 164
>PRK05467 Fe(II)-dependent oxygenase superfamily protein; Provisional
Probab=26.94 E-value=2e+02 Score=24.76 Aligned_cols=24 Identities=21% Similarity=0.419 Sum_probs=21.1
Q ss_pred EEEECCCCEEEEcCCCeeEEEecC
Q 027536 142 TQQLRPGDSFVFPKGLIHFLYNMD 165 (222)
Q Consensus 142 ~~~L~~GDv~viP~G~~H~~~N~g 165 (222)
...+++|+++++|...+|...-+.
T Consensus 142 ~Vkp~aG~~vlfps~~lH~v~pVt 165 (226)
T PRK05467 142 RVKLPAGDLVLYPSTSLHRVTPVT 165 (226)
T ss_pred EEecCCCeEEEECCCCceeeeecc
Confidence 578899999999999999997654
No 165
>TIGR02408 ectoine_ThpD ectoine hydroxylase. Both ectoine and hydroxyectoine are compatible solvents that serve as protectants against osmotic and thermal stresses. A number of genomes synthesize ectoine. This enzyme allows conversion of ectoine to hydroxyectoine, which may be more effective for some purposes, and is found in a subset of ectoine-producing organisms.
Probab=25.17 E-value=98 Score=26.99 Aligned_cols=40 Identities=15% Similarity=0.061 Sum_probs=30.0
Q ss_pred EEEECCCCEEEEcCCCeeEE-EecCCCCCEEEEEEEeCCCC
Q 027536 142 TQQLRPGDSFVFPKGLIHFL-YNMDSSKPALALSGLSSQNP 181 (222)
Q Consensus 142 ~~~L~~GDv~viP~G~~H~~-~N~g~~~~a~~i~~~~s~~p 181 (222)
...+++||++++-.-++|.- .|.++.....++..|++.+.
T Consensus 212 ~~~~~aGDvl~f~~~~~H~S~~N~s~~~R~~l~l~y~~~~~ 252 (277)
T TIGR02408 212 TFTGKAGSAVWFDCNTMHGSGSNITPWPRSNVFMVFNSVEN 252 (277)
T ss_pred eeccCCceEEEEccccccCCCCCCCCCcceeEEEEEecCCC
Confidence 45789999999999999986 46653456666777776443
No 166
>PF05293 ASFV_L11L: African swine fever virus (ASFV) L11L protein; InterPro: IPR007957 L11L is an integral membrane protein of the African swine fever virus, which is expressed late in the virus replication cycle. The protein is thought to be non-essential for growth in vitro and for virus virulence in domestic pigs [].
Probab=24.67 E-value=44 Score=23.18 Aligned_cols=7 Identities=57% Similarity=1.426 Sum_probs=6.2
Q ss_pred Ccceeee
Q 027536 29 LQDFCIA 35 (222)
Q Consensus 29 ~~dfcva 35 (222)
|+|||.+
T Consensus 43 lrdfcfp 49 (78)
T PF05293_consen 43 LRDFCFP 49 (78)
T ss_pred HHHccCC
Confidence 7999986
No 167
>PF02796 HTH_7: Helix-turn-helix domain of resolvase; InterPro: IPR006120 Site-specific recombination plays an important role in DNA rearrangement in prokaryotic organisms. Two types of site-specific recombination are known to occur: Recombination between inverted repeats resulting in the reversal of a DNA segment. Recombination between repeat sequences on two DNA molecules resulting in their cointegration, or between repeats on one DNA molecule resulting in the excision of a DNA fragment. Site-specific recombination is characterised by a strand exchange mechanism that requires no DNA synthesis or high energy cofactor; the phosphodiester bond energy is conserved in a phospho-protein linkage during strand cleavage and re-ligation. Two unrelated families of recombinases are currently known []. The first, called the 'phage integrase' family, groups a number of bacterial phage and yeast plasmid enzymes. The second [], called the 'resolvase' family, groups enzymes which share the following structural characteristics: an N-terminal catalytic and dimerization domain that contains a conserved serine residue involved in the transient covalent attachment to DNA IPR006119 from INTERPRO, and a C-terminal helix-turn-helix DNA-binding domain. ; GO: 0000150 recombinase activity, 0003677 DNA binding, 0006310 DNA recombination; PDB: 1ZR2_A 2GM4_B 1RES_A 1ZR4_A 1RET_A 1GDT_B 2R0Q_C 1JKP_C 1IJW_C 1JJ6_C ....
Probab=23.67 E-value=98 Score=19.19 Aligned_cols=29 Identities=17% Similarity=0.214 Sum_probs=21.8
Q ss_pred hhhhcCCCCCCHHHHHHHcCCCHHHHHHHHH
Q 027536 188 MATFASKPPIPDEVLKKAFQITRQDVSIIRK 218 (222)
Q Consensus 188 ~~~f~~~~~ip~~vla~af~~~~~~v~~l~~ 218 (222)
-.++.. +++..-+|+.|+++..+|-++++
T Consensus 15 ~~l~~~--G~si~~IA~~~gvsr~TvyR~l~ 43 (45)
T PF02796_consen 15 KELYAE--GMSIAEIAKQFGVSRSTVYRYLN 43 (45)
T ss_dssp HHHHHT--T--HHHHHHHTTS-HHHHHHHHC
T ss_pred HHHHHC--CCCHHHHHHHHCcCHHHHHHHHh
Confidence 356676 79999999999999999988765
No 168
>PF03058 Sar8_2: Sar8.2 family; InterPro: IPR004297 Members of this family are found in Solanaceae spp. plants, a taxonomic group (family) that includes pepper and tobacco plant species. Synthesis of these proteins is induced by Tobacco mosaic virus and salicylic acid []; indeed they are thought to be involved in the development of systemic acquired resistance (SAR) after an initial hypersensitive response to microbial infection [, ]. SAR is characterised by long-lasting resistance to infection by a wide range of pathogens, extending to plant tissues distant from the initial infection site [].
Probab=22.85 E-value=69 Score=23.73 Aligned_cols=18 Identities=44% Similarity=0.473 Sum_probs=10.5
Q ss_pred chhhhHHHHHHHHHHHHH
Q 027536 3 ISSKTIQLFLYSLALLLS 20 (222)
Q Consensus 3 ~~~~~~~~~~~~~~~~~~ 20 (222)
|++|+.+++.+.||+++.
T Consensus 1 M~~Ktnlfl~lSLailLm 18 (93)
T PF03058_consen 1 MVSKTNLFLCLSLAILLM 18 (93)
T ss_pred CcchhhhHHHHHHHHHHH
Confidence 677877655555544433
No 169
>PHA02699 hypothetical protein; Provisional
Probab=22.48 E-value=2.7e+02 Score=26.02 Aligned_cols=59 Identities=17% Similarity=0.273 Sum_probs=37.5
Q ss_pred cEEEEEEeCeEEEEEEecCCcEEEEEECCCCEEEEcCCCeeEEE-ecCCCCCEEEEEEEeCC
Q 027536 119 SEVTICLKGALLVGFVDTLGRLFTQQLRPGDSFVFPKGLIHFLY-NMDSSKPALALSGLSSQ 179 (222)
Q Consensus 119 ~Ei~yVl~G~~~~~~v~~~~~~~~~~L~~GDv~viP~G~~H~~~-N~g~~~~a~~i~~~~s~ 179 (222)
--.+++++-++..++.-++-+.....++.||++++|.--.-.+. ..| +++..+.+.-++
T Consensus 168 FvAtICIKNeGiSgI~Vp~T~~lktnmqeGD~IVsRSsRGI~FLPQIG--GeAiYLIVsL~P 227 (466)
T PHA02699 168 FVAIICIKNEGMAAIAVNNTKFLKTNIQEGDAIVFPAARGMFFLPHIG--GDAEYIILTLTP 227 (466)
T ss_pred eEEEEEEcCCCeeEEEecCCcceeeeeecCCEEEEehhchhhhhhhcC--CceEEEEEEEec
Confidence 34467777777777765554545789999999999976544432 345 444444444333
No 170
>PF12937 F-box-like: F-box-like; PDB: 1P22_A 2OVP_B 2OVR_B 2OVQ_B 1FS1_A 1FS2_C 1FQV_I 1LDK_E 2AST_B 2ASS_B.
Probab=21.77 E-value=1.2e+02 Score=18.57 Aligned_cols=21 Identities=29% Similarity=0.634 Sum_probs=15.2
Q ss_pred CCCHHHHHHHcC-CCHHHHHHH
Q 027536 196 PIPDEVLKKAFQ-ITRQDVSII 216 (222)
Q Consensus 196 ~ip~~vla~af~-~~~~~v~~l 216 (222)
.+|+|++.+-|. ++.+++-.+
T Consensus 3 ~LP~Eil~~If~~L~~~dl~~~ 24 (47)
T PF12937_consen 3 SLPDEILLEIFSYLDPRDLLRL 24 (47)
T ss_dssp CS-HHHHHHHHTTS-HHHHHHH
T ss_pred HhHHHHHHHHHhcCCHHHHHHH
Confidence 699999999998 677776554
No 171
>KOG2968 consensus Predicted esterase of the alpha-beta hydrolase superfamily (Neuropathy target esterase), contains cAMP-binding domains [General function prediction only]
Probab=21.01 E-value=52 Score=34.16 Aligned_cols=62 Identities=11% Similarity=0.214 Sum_probs=44.9
Q ss_pred CCccccceEEEEEEEcCCcccCCccCCCCcEEEEEEeCeEEEEEEecCCcE-EEEEECCCCEEE
Q 027536 90 PGVNTMGLTMARIDIAANGIVPPHTHPRASEVTICLKGALLVGFVDTLGRL-FTQQLRPGDSFV 152 (222)
Q Consensus 90 P~l~~lgis~~~v~l~pGg~~~pH~H~~a~Ei~yVl~G~~~~~~v~~~~~~-~~~~L~~GDv~v 152 (222)
|-|..++.++..+.+.||...-.-=-+ +.++.+|+.|+++--.-.+.++. +..++..||++=
T Consensus 499 p~lr~~D~AldWv~l~~g~alyrqgD~-Sd~iyvVl~GRlRsv~~~~~~k~~i~~EygrGd~iG 561 (1158)
T KOG2968|consen 499 PFLRKLDFALDWVRLEPGQALYRQGDS-SDSIYVVLNGRLRSVIRQSGGKKEIVGEYGRGDLIG 561 (1158)
T ss_pred HHHhhhhhhcceEEeccccHHHhcCCc-cCcEEEEecCeehhhhhccCccchhhhhccCcceee
Confidence 556667788888999999876555444 79999999999996543222332 456788899873
No 172
>KOG2132 consensus Uncharacterized conserved protein, contains JmjC domain [Chromatin structure and dynamics; Signal transduction mechanisms]
Probab=20.74 E-value=94 Score=28.51 Aligned_cols=76 Identities=17% Similarity=0.316 Sum_probs=53.7
Q ss_pred CCCCCccccceEEEEEEEcCCcccCCccCCCCcEEEEEEeCeEEEEEEecC--C--------------------------
Q 027536 87 KNLPGVNTMGLTMARIDIAANGIVPPHTHPRASEVTICLKGALLVGFVDTL--G-------------------------- 138 (222)
Q Consensus 87 ~~fP~l~~lgis~~~v~l~pGg~~~pH~H~~a~Ei~yVl~G~~~~~~v~~~--~-------------------------- 138 (222)
-.+|..++-++.+.....+.|.+.|.|.-+. .-++.=+.|+.++.+.-+. +
T Consensus 240 c~~~~f~~~~v~~~~w~GpaGtV~pih~dp~-hNi~~qv~G~k~i~l~~p~~s~~lyP~d~~~~~tsqvdvenPdlk~fp 318 (355)
T KOG2132|consen 240 CSFPNFENEVVDINAWIGPAGTVLPIHMDPW-HNILSQVFGRKRIRLYPPEDSGALYPTDTYLLETSQVDVENPDLKAFP 318 (355)
T ss_pred eecCCCCccccceeEEeccCCceeccccccc-cceeeeeecceEEEEecCcccCCCCCccchhhcccccccCCCChhhhh
Confidence 3455555444566666666688999998886 7888888899998886431 1
Q ss_pred -----cEEEEEECCCCEEEEcCCCeeEEEe
Q 027536 139 -----RLFTQQLRPGDSFVFPKGLIHFLYN 163 (222)
Q Consensus 139 -----~~~~~~L~~GDv~viP~G~~H~~~N 163 (222)
+.....|++||++++|+-.-|+.+.
T Consensus 319 ~~~k~~~l~~lL~pGe~L~iP~kwwhyvrs 348 (355)
T KOG2132|consen 319 KFAKARFLDCLLEPGEALFIPPKWWHYVRS 348 (355)
T ss_pred HHHHHHHHHHhcCCchhccccHHHhhhhhh
Confidence 0114568889999999998888753
No 173
>PF01238 PMI_typeI: Phosphomannose isomerase type I; InterPro: IPR001250 Mannose-6-phosphate isomerase or phosphomannose isomerase (5.3.1.8 from EC) (PMI) is the enzyme that catalyses the interconversion of mannose-6-phosphate and fructose-6-phosphate. In eukaryotes PMI is involved in the synthesis of GDP-mannose, a constituent of N- and O-linked glycans and GPI anchors and in prokaryotes it participates in a variety of pathways, including capsular polysaccharide biosynthesis and D-mannose metabolism. PMI's belong to the cupin superfamily whose functions range from isomerase and epimerase activities involved in the modification of cell wall carbohydrates in bacteria and plants, to non-enzymatic storage proteins in plant seeds, and transcription factors linked to congenital baldness in mammals []. Three classes of PMI have been defined []. Type I includes eukaryotic PMI and the enzyme encoded by the manA gene in enterobacteria. PMI has a bound zinc ion, which is essential for activity. A crystal structure of PMI from Candida albicans shows that the enzyme has three distinct domains []. The active site lies in the central domain, contains a single essential zinc atom, and forms a deep, open cavity of suitable dimensions to contain M6P or F6P The central domain is flanked by a helical domain on one side and a jelly-roll like domain on the other.; GO: 0004476 mannose-6-phosphate isomerase activity, 0008270 zinc ion binding, 0005975 carbohydrate metabolic process; PDB: 1PMI_A 1QWR_B 1ZX5_A 3H1Y_A 2WFP_A 3H1M_A 3H1W_A.
Probab=20.61 E-value=88 Score=28.80 Aligned_cols=20 Identities=30% Similarity=0.649 Sum_probs=16.8
Q ss_pred EEECCCCEEEEcCCCeeEEE
Q 027536 143 QQLRPGDSFVFPKGLIHFLY 162 (222)
Q Consensus 143 ~~L~~GDv~viP~G~~H~~~ 162 (222)
..|++|+.+++|+|.+|...
T Consensus 252 v~L~pGeaifl~a~~~HAYl 271 (373)
T PF01238_consen 252 VELQPGEAIFLPAGEPHAYL 271 (373)
T ss_dssp EEE-TT-EEEEHTTHHEEEE
T ss_pred EEecCCceEEecCCCccccc
Confidence 69999999999999999886
Done!