BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 027538
(222 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3KEV|A Chain A, X-Ray Crystal Structure Of A Dcun1 Domain-Containing
Protein From Galdieria Sulfuraria
Length = 199
Score = 118 bits (296), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 72/198 (36%), Positives = 114/198 (57%), Gaps = 7/198 (3%)
Query: 26 SGKAKAKEIENFFDKYAN--GGIIDPDGIVTLCKDLELEYTDVRILMLAWKLKAVKLGYF 83
S +A K I F Y G I +G+ L +D++++ +DV L+LAWKLKA F
Sbjct: 1 SKRADKKAILELFQTYKEPLGNYIGAEGLQRLFEDIQVDPSDVVTLVLAWKLKASSTXEF 60
Query: 84 TQDEWETGLKTLQVNNLSKLKKAISELEKEVRTPPNFADFYSFAFRYHLTEEKQKNIDIE 143
++ E+ GL LQV++L KLK+ +S L KE+ P F FY F F+Y E Q+++ E
Sbjct: 61 SEKEFVEGLANLQVDSLEKLKRKLSSLRKEIEDPSKFRAFYQFVFQYS-KEPSQRSLPAE 119
Query: 144 TICELLNLVLGPQFRRQVDLLIDYLKVQSNYKVINLDQWLGIFRFCNEISFPDLENYDET 203
T L +++L +F +D +++LK +N I+ D W ++ F ++S DL +YDE
Sbjct: 120 TAXALWDVLLRGRFSL-LDSWLEFLK--NNTHSISRDTWNLLYDFS-QLSEKDLSDYDEN 175
Query: 204 QAWPLILDNFVDWLRENH 221
AWP+++D+FV WL+
Sbjct: 176 GAWPVLIDDFVKWLKHEQ 193
>pdb|3TDU|A Chain A, N-Terminal Acetylation Acts As An Avidity Enhancer Within
An Interconnected Multiprotein Complex: Structure Of A
Human Cul1whb- Dcn1p-Acetylated Ubc12n Complex
pdb|3TDU|B Chain B, N-Terminal Acetylation Acts As An Avidity Enhancer Within
An Interconnected Multiprotein Complex: Structure Of A
Human Cul1whb- Dcn1p-Acetylated Ubc12n Complex
pdb|3TDZ|A Chain A, N-Terminal Acetylation Acts As An Avidity Enhancer Within
An Interconnected Multiprotein Complex: Structure Of A
Human Cul1whb- Dcn1p-Stapled Acetylated Ubc12n Complex
pdb|3TDZ|B Chain B, N-Terminal Acetylation Acts As An Avidity Enhancer Within
An Interconnected Multiprotein Complex: Structure Of A
Human Cul1whb- Dcn1p-Stapled Acetylated Ubc12n Complex
Length = 200
Score = 104 bits (260), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 62/190 (32%), Positives = 106/190 (55%), Gaps = 7/190 (3%)
Query: 32 KEIENFFDKY---ANGGIIDPDGIVTLCKDLELEYTDVRILMLAWKLKAVKLGYFTQDEW 88
K++E +++Y + I DGI C DL L+ + +L++AWK +A F++ E+
Sbjct: 4 KKLEQLYNRYKDPQDENKIGIDGIQQFCDDLALDPASISVLIIAWKFRAATQCEFSKQEF 63
Query: 89 ETGLKTLQVNNLSKLKKAISELEKEVRTPPNFADFYSFAFRYHLTEEKQKNIDIETICEL 148
G+ L +++ KLK I ++E+E++ P F DFY F F + QK +D+E
Sbjct: 64 MDGMTELGCDSIEKLKAQIPKMEQELKEPGRFKDFYQFTFNFA-KNPGQKGLDLEMAIAY 122
Query: 149 LNLVLGPQFRRQVDLLIDYLKVQSNYKVINLDQWLGIFRFCNEISFPDLENYDETQAWPL 208
NLVL +F+ +DL +L ++ + + I D W + F I+ D+ NYDE AWP+
Sbjct: 123 WNLVLNGRFKF-LDLWNKFL-LEHHKRSIPKDTWNLLLDFSTMIA-DDMSNYDEEGAWPV 179
Query: 209 ILDNFVDWLR 218
++D+FV++ R
Sbjct: 180 LIDDFVEFAR 189
>pdb|4GAO|A Chain A, Dcnl Complex With N-terminally Acetylated Nedd8 E2 Peptide
pdb|4GAO|B Chain B, Dcnl Complex With N-terminally Acetylated Nedd8 E2 Peptide
pdb|4GAO|D Chain D, Dcnl Complex With N-terminally Acetylated Nedd8 E2 Peptide
pdb|4GAO|G Chain G, Dcnl Complex With N-terminally Acetylated Nedd8 E2 Peptide
Length = 200
Score = 100 bits (249), Expect = 7e-22, Method: Compositional matrix adjust.
Identities = 61/190 (32%), Positives = 103/190 (54%), Gaps = 7/190 (3%)
Query: 32 KEIENFFDKY---ANGGIIDPDGIVTLCKDLELEYTDVRILMLAWKLKAVKLGYFTQDEW 88
K++E + +Y + I DGI C DL L+ + +L++AWK +A F++ E+
Sbjct: 4 KKLERLYGRYKDPQDENKIGVDGIQQFCDDLSLDPASISVLVIAWKFRAATQCEFSRKEF 63
Query: 89 ETGLKTLQVNNLSKLKKAISELEKEVRTPPNFADFYSFAFRYHLTEEKQKNIDIETICEL 148
G+ L +++ KLK + LE+E++ F DFY F F + QK +D+E
Sbjct: 64 LDGMTELGCDSMEKLKALLPRLEQELKDTAKFKDFYQFTFTFA-KNPGQKGLDLEMAVAY 122
Query: 149 LNLVLGPQFRRQVDLLIDYLKVQSNYKVINLDQWLGIFRFCNEISFPDLENYDETQAWPL 208
LVL +F+ +DL +L ++ + + I D W + F N I+ D+ NYDE AWP+
Sbjct: 123 WKLVLSGRFKF-LDLWNTFL-MEHHKRSIPRDTWNLLLDFGNMIA-DDMSNYDEEGAWPV 179
Query: 209 ILDNFVDWLR 218
++D+FV++ R
Sbjct: 180 LIDDFVEYAR 189
>pdb|4GBA|A Chain A, Dcnl Complex With N-terminally Acetylated Nedd8 E2 Peptide
pdb|4GBA|B Chain B, Dcnl Complex With N-terminally Acetylated Nedd8 E2 Peptide
Length = 221
Score = 95.5 bits (236), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 60/200 (30%), Positives = 97/200 (48%), Gaps = 5/200 (2%)
Query: 27 GKAKAKEIENFFDKYANG--GIIDPDGIVTLCKDLELEYTDVRILMLAWKLKAVKLGYFT 84
G + + +E F +Y + I +G+ C DL ++ T+ R+L+LAWK +A + FT
Sbjct: 1 GSSSLQRLEELFRRYKDEREDAILEEGMERFCNDLCVDPTEFRVLLLAWKFQAATMCKFT 60
Query: 85 QDEWETGLKTLQVNNLSKLKKAISELEKEVRTPPNFADFYSFAFRYHL-TEEKQKNIDIE 143
+ E+ G K + +++ + L E + F D Y F F++ L +EE Q+++ E
Sbjct: 61 RKEFFDGCKAISADSIDGICARFPSLLTEAKQEDKFKDLYRFTFQFGLDSEEGQRSLHRE 120
Query: 144 TICELLNLVLGPQFRRQVDLLIDYLKVQ-SNYKVINLDQWLGIFRFCNEISFPDLENYDE 202
L LV +D +++L S K I+ D W F I PDL NY E
Sbjct: 121 IAIALWKLVFTQNNPPVLDQWLNFLTENPSGIKGISRDTWNMFLNFTQVIG-PDLSNYSE 179
Query: 203 TQAWPLILDNFVDWLRENHR 222
+AWP + D FV+W E +
Sbjct: 180 DEAWPSLFDTFVEWEMERRK 199
>pdb|3O2P|A Chain A, A Dual E3 Mechanism For Rub1 Ligation To Cdc53:
Dcn1(P)-Cdc53(Whb)
pdb|3O6B|A Chain A, A Dual E3 Mechanism For Rub1 Ligation To Cdc53:
Dcn1(P)-Cdc53(Whb) Low Resolution
pdb|3O6B|C Chain C, A Dual E3 Mechanism For Rub1 Ligation To Cdc53:
Dcn1(P)-Cdc53(Whb) Low Resolution
pdb|3O6B|E Chain E, A Dual E3 Mechanism For Rub1 Ligation To Cdc53:
Dcn1(P)-Cdc53(Whb) Low Resolution
pdb|3O6B|G Chain G, A Dual E3 Mechanism For Rub1 Ligation To Cdc53:
Dcn1(P)-Cdc53(Whb) Low Resolution
pdb|3O6B|I Chain I, A Dual E3 Mechanism For Rub1 Ligation To Cdc53:
Dcn1(P)-Cdc53(Whb) Low Resolution
pdb|3TDI|B Chain B, Yeast Cul1whb-Dcn1p Acetylated Ubc12n Complex
pdb|3TDI|A Chain A, Yeast Cul1whb-Dcn1p Acetylated Ubc12n Complex
Length = 202
Score = 52.8 bits (125), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 50/205 (24%), Positives = 92/205 (44%), Gaps = 13/205 (6%)
Query: 27 GKAKAKEIENFFDKYANGGIIDPDGIVTLCKDLELEYTDVRILMLAWKLKAVKLGY-FTQ 85
G KE+ F+ Y N + D D +V ++L D+ L LA L KL +
Sbjct: 1 GSVYPKELTQVFEHYINNNLFDIDSLVKFIEELGYNLEDLATLCLAHLLGYKKLEEPLKR 60
Query: 86 DEWETGLKTLQVNNLSKLKKAISELEKEVRTPPN-FADFYSFAFRYHLTEEKQKNIDIET 144
+++ + + +S +++ I L+ ++ F Y++AF L + +K+ID +
Sbjct: 61 EDFLSTWFMQGCSTISDMQECIKTLDVKLHEDLQYFTQIYNYAFNLIL-DPNRKDIDTDE 119
Query: 145 ICELLNLVLGPQF--RRQVDLLIDYLKV--QSNYKVINLDQWLGIFRFCNEISFPDLE-- 198
+ L P++ R + DLL + + I+ D W + F +P ++
Sbjct: 120 GIQYWKLFFQPEYPVRMEPDLLEAWFRFLRDEGKTTISKDTWRMLLLFFKR--YPTIQKI 177
Query: 199 --NYDETQAWPLILDNFVDWLRENH 221
+YDET AWP I+D F + L++
Sbjct: 178 ISDYDETAAWPFIIDEFYECLQDQQ 202
>pdb|3BQ3|A Chain A, Crystal Structure Of S. Cerevisiae Dcn1
Length = 270
Score = 50.8 bits (120), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 49/200 (24%), Positives = 90/200 (45%), Gaps = 13/200 (6%)
Query: 32 KEIENFFDKYANGGIIDPDGIVTLCKDLELEYTDVRILMLAWKLKAVKLGY-FTQDEWET 90
KE+ F+ Y N + D D +V ++L D+ L LA L KL ++++ +
Sbjct: 74 KELTQVFEHYINNNLFDIDSLVKFIEELGYNLEDLATLCLAHLLGYKKLEEPLKREDFLS 133
Query: 91 GLKTLQVNNLSKLKKAISELEKEVRTPPN-FADFYSFAFRYHLTEEKQKNIDIETICELL 149
+ +S ++ I L+ ++ F Y++AF L + +K+ID + +
Sbjct: 134 TWFXQGCSTISDXQECIKTLDVKLHEDLQYFTQIYNYAFNLIL-DPNRKDIDTDEGIQYW 192
Query: 150 NLVLGPQF--RRQVDLLIDYLKV--QSNYKVINLDQWLGIFRFCNEISFPDLE----NYD 201
L P++ R + DLL + + I+ D W + F +P ++ +YD
Sbjct: 193 KLFFQPEYPVRXEPDLLEAWFRFLRDEGKTTISKDTWRXLLLFFKR--YPTIQKIISDYD 250
Query: 202 ETQAWPLILDNFVDWLRENH 221
ET AWP I+D F + L++
Sbjct: 251 ETAAWPFIIDEFYECLQDQQ 270
>pdb|2IS9|A Chain A, Structure Of Yeast Dcn-1
Length = 204
Score = 50.8 bits (120), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 49/200 (24%), Positives = 91/200 (45%), Gaps = 13/200 (6%)
Query: 32 KEIENFFDKYANGGIIDPDGIVTLCKDLELEYTDVRILMLAWKLKAVKLGY-FTQDEWET 90
KE+ F+ Y N + D D +V ++L D+ L LA L KL ++++ +
Sbjct: 8 KELTQVFEHYINNNLFDIDSLVKFIEELGYNLEDLATLCLAHLLGYKKLEEPLKREDFLS 67
Query: 91 GLKTLQVNNLSKLKKAISELEKEVRTPPN-FADFYSFAFRYHLTEEKQKNIDIETICELL 149
+ +S +++ I L+ ++ F Y++AF L + +K+ID + +
Sbjct: 68 TWFMQGCSTISDMQECIKTLDVKLHEDLQYFTQIYNYAFNLIL-DPNRKDIDTDEGIQYW 126
Query: 150 NLVLGPQF--RRQVDLLIDYLKV--QSNYKVINLDQWLGIFRFCNEISFPDLE----NYD 201
L P++ R + DLL + + I+ D W + F +P ++ +YD
Sbjct: 127 KLFFQPEYPVRMEPDLLEAWFRFLRDEGKTTISKDTWRMLLLFFK--RYPTIQKIISDYD 184
Query: 202 ETQAWPLILDNFVDWLRENH 221
ET AWP I+D F + L++
Sbjct: 185 ETAAWPFIIDEFYECLQDQQ 204
>pdb|1NG0|A Chain A, The Three-Dimensional Structure Of Cocksfoot Mottle
Virus At 2.7a Resolution
pdb|1NG0|B Chain B, The Three-Dimensional Structure Of Cocksfoot Mottle
Virus At 2.7a Resolution
pdb|1NG0|C Chain C, The Three-Dimensional Structure Of Cocksfoot Mottle
Virus At 2.7a Resolution
Length = 253
Score = 28.9 bits (63), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 10/29 (34%), Positives = 17/29 (58%)
Query: 11 SAPQNPPAVKSSNARSGKAKAKEIENFFD 39
S P NPPA S ++G+ + + ++FD
Sbjct: 37 SRPLNPPAAVGSTLKAGRGRTAGVSDWFD 65
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.319 0.136 0.410
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 6,917,530
Number of Sequences: 62578
Number of extensions: 286117
Number of successful extensions: 656
Number of sequences better than 100.0: 10
Number of HSP's better than 100.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 639
Number of HSP's gapped (non-prelim): 10
length of query: 222
length of database: 14,973,337
effective HSP length: 95
effective length of query: 127
effective length of database: 9,028,427
effective search space: 1146610229
effective search space used: 1146610229
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 49 (23.5 bits)