Query 027538
Match_columns 222
No_of_seqs 117 out of 337
Neff 5.9
Searched_HMMs 46136
Date Fri Mar 29 11:26:23 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/027538.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/027538hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG3077 Uncharacterized conser 100.0 2.2E-64 4.8E-69 441.6 19.1 191 27-221 59-252 (260)
2 PF03556 Cullin_binding: Culli 100.0 2.5E-45 5.3E-50 289.7 9.4 116 100-218 1-117 (117)
3 cd00051 EFh EF-hand, calcium b 94.0 0.29 6.3E-06 31.2 6.3 59 34-92 2-62 (63)
4 PF13833 EF-hand_8: EF-hand do 93.9 0.14 3E-06 33.9 4.5 50 45-94 3-53 (54)
5 KOG3077 Uncharacterized conser 92.9 0.12 2.6E-06 46.3 3.9 85 120-209 80-164 (260)
6 PTZ00183 centrin; Provisional 92.4 2.2 4.8E-05 33.3 10.3 64 31-94 16-81 (158)
7 PTZ00183 centrin; Provisional 92.3 0.86 1.9E-05 35.7 7.8 82 29-110 50-135 (158)
8 cd05031 S-100A10_like S-100A10 91.7 0.61 1.3E-05 34.6 5.9 67 31-97 7-82 (94)
9 cd00052 EH Eps15 homology doma 91.2 0.85 1.8E-05 30.7 5.7 59 36-96 3-63 (67)
10 cd05029 S-100A6 S-100A6: S-100 90.8 1.1 2.5E-05 33.2 6.6 64 33-96 11-81 (88)
11 smart00027 EH Eps15 homology d 89.7 1.1 2.5E-05 33.2 5.8 63 31-95 9-73 (96)
12 PTZ00184 calmodulin; Provision 89.4 8 0.00017 29.5 14.1 64 31-94 10-75 (149)
13 cd05030 calgranulins Calgranul 89.3 1 2.2E-05 33.2 5.3 63 33-95 9-80 (88)
14 PF13499 EF-hand_7: EF-hand do 89.1 1.3 2.9E-05 30.0 5.4 60 33-92 1-66 (66)
15 PTZ00184 calmodulin; Provision 88.1 2.3 5E-05 32.6 6.8 98 29-126 44-145 (149)
16 cd00213 S-100 S-100: S-100 dom 85.8 3.8 8.3E-05 29.6 6.5 64 32-95 8-80 (88)
17 KOG0027 Calmodulin and related 85.4 7.7 0.00017 31.0 8.7 68 30-97 6-75 (151)
18 KOG0036 Predicted mitochondria 82.0 4.4 9.5E-05 38.9 6.6 80 32-114 82-163 (463)
19 COG5126 FRQ1 Ca2+-binding prot 81.2 7.4 0.00016 32.5 7.1 68 27-94 87-156 (160)
20 cd05022 S-100A13 S-100A13: S-1 79.7 10 0.00022 28.3 6.8 64 32-95 8-76 (89)
21 cd05025 S-100A1 S-100A1: S-100 79.4 12 0.00026 27.4 7.1 65 31-95 8-81 (92)
22 KOG0027 Calmodulin and related 79.1 24 0.00052 28.1 9.3 83 26-108 38-128 (151)
23 KOG0028 Ca2+-binding protein ( 78.8 23 0.00049 29.9 9.1 101 31-131 32-136 (172)
24 cd05027 S-100B S-100B: S-100B 78.6 11 0.00024 27.9 6.7 64 32-95 8-80 (88)
25 cd05023 S-100A11 S-100A11: S-1 77.8 12 0.00026 27.7 6.7 65 32-96 9-82 (89)
26 PF13833 EF-hand_8: EF-hand do 77.5 5 0.00011 26.2 4.1 47 80-126 2-50 (54)
27 COG5126 FRQ1 Ca2+-binding prot 77.5 18 0.0004 30.2 8.3 80 33-113 21-104 (160)
28 PF09279 EF-hand_like: Phospho 77.1 6 0.00013 28.4 4.8 62 33-94 1-69 (83)
29 cd05026 S-100Z S-100Z: S-100Z 76.0 16 0.00035 27.1 7.0 64 33-96 11-83 (93)
30 PF05517 p25-alpha: p25-alpha 75.7 7.5 0.00016 31.9 5.5 96 34-129 1-123 (154)
31 TIGR01446 DnaD_dom DnaD and ph 71.4 8.3 0.00018 27.0 4.2 56 46-104 15-72 (73)
32 PF00036 EF-hand_1: EF hand; 70.2 3.2 7E-05 24.6 1.6 19 77-95 11-29 (29)
33 PF14658 EF-hand_9: EF-hand do 65.1 17 0.00037 26.0 4.7 50 45-94 13-64 (66)
34 PLN02964 phosphatidylserine de 60.8 55 0.0012 33.1 9.1 78 32-113 143-227 (644)
35 KOG0028 Ca2+-binding protein ( 55.8 60 0.0013 27.5 7.1 65 30-94 104-170 (172)
36 PF13405 EF-hand_6: EF-hand do 55.7 14 0.0003 21.5 2.5 27 34-60 2-31 (31)
37 cd00052 EH Eps15 homology doma 52.4 35 0.00076 22.5 4.4 31 76-107 9-39 (67)
38 PF12763 EF-hand_4: Cytoskelet 52.2 30 0.00064 26.6 4.5 63 30-95 8-72 (104)
39 cd00252 SPARC_EC SPARC_EC; ext 48.9 98 0.0021 24.2 7.0 59 30-92 46-106 (116)
40 KOG2643 Ca2+ binding protein, 48.8 37 0.00079 33.0 5.3 82 45-130 301-388 (489)
41 smart00027 EH Eps15 homology d 48.0 34 0.00074 25.1 4.1 69 61-130 4-73 (96)
42 KOG0036 Predicted mitochondria 47.0 1.3E+02 0.0029 29.1 8.7 86 31-116 13-117 (463)
43 PLN02223 phosphoinositide phos 46.9 45 0.00097 33.1 5.8 65 30-94 14-92 (537)
44 PF07531 TAFH: NHR1 homology t 46.6 42 0.00091 25.8 4.4 64 51-120 12-83 (96)
45 PF05042 Caleosin: Caleosin re 44.6 1.3E+02 0.0028 25.6 7.5 61 27-87 91-159 (174)
46 PF01314 AFOR_C: Aldehyde ferr 44.4 12 0.00026 35.1 1.3 36 52-88 116-151 (382)
47 KOG0034 Ca2+/calmodulin-depend 42.5 1.2E+02 0.0027 25.7 7.2 134 30-186 28-173 (187)
48 PLN02228 Phosphoinositide phos 42.1 88 0.0019 31.3 7.0 66 29-94 21-92 (567)
49 PLN02230 phosphoinositide phos 38.9 85 0.0018 31.6 6.4 66 29-94 26-102 (598)
50 cd05022 S-100A13 S-100A13: S-1 38.3 74 0.0016 23.6 4.6 68 66-133 7-79 (89)
51 PLN02222 phosphoinositide phos 38.1 76 0.0016 31.8 5.9 64 30-94 23-90 (581)
52 PRK10391 oriC-binding nucleoid 37.9 66 0.0014 23.4 4.0 39 84-124 2-40 (71)
53 PF11116 DUF2624: Protein of u 36.1 1.8E+02 0.0039 21.8 6.3 52 45-96 13-64 (85)
54 KOG0030 Myosin essential light 35.7 1.4E+02 0.0029 24.9 6.0 63 32-94 11-77 (152)
55 PF13443 HTH_26: Cro/C1-type H 35.1 22 0.00048 23.8 1.2 35 30-66 23-57 (63)
56 cd03567 VHS_GGA VHS domain fam 34.4 2.5E+02 0.0053 22.6 8.1 91 35-125 3-129 (139)
57 smart00862 Trans_reg_C Transcr 33.0 1.2E+02 0.0025 20.6 4.8 53 63-116 6-60 (78)
58 PF13499 EF-hand_7: EF-hand do 33.0 1.5E+02 0.0032 19.6 6.3 42 73-114 7-49 (66)
59 COG5104 PRP40 Splicing factor 32.8 2.6E+02 0.0057 27.5 8.3 66 27-92 250-333 (590)
60 PF04659 Arch_fla_DE: Archaeal 30.1 89 0.0019 24.0 3.9 53 161-214 21-86 (99)
61 KOG2873 Ubiquinol cytochrome c 29.3 1.2E+02 0.0027 27.6 5.2 49 120-171 201-252 (284)
62 cd05031 S-100A10_like S-100A10 28.4 1E+02 0.0022 22.4 4.0 31 80-110 24-60 (94)
63 PF00486 Trans_reg_C: Transcri 27.9 1.3E+02 0.0029 20.3 4.3 50 66-116 9-59 (77)
64 PF06535 RGM_N: Repulsive guid 27.9 17 0.00037 30.5 -0.4 15 196-211 116-130 (161)
65 PF12174 RST: RCD1-SRO-TAF4 (R 27.7 39 0.00085 24.3 1.5 16 80-95 39-54 (70)
66 PF06992 Phage_lambda_P: Repli 26.8 1E+02 0.0022 27.3 4.3 40 83-122 65-108 (233)
67 PF14788 EF-hand_10: EF hand; 26.8 1.8E+02 0.0039 19.8 4.5 48 47-94 2-49 (51)
68 PLN02952 phosphoinositide phos 26.7 1.7E+02 0.0037 29.5 6.2 65 29-93 35-109 (599)
69 KOG0037 Ca2+-binding protein, 26.5 3.6E+02 0.0079 23.8 7.5 66 30-95 55-123 (221)
70 PF00046 Homeobox: Homeobox do 26.3 63 0.0014 21.1 2.3 34 32-68 13-46 (57)
71 PF04904 NCD1: NAB conserved r 26.2 2E+02 0.0044 21.4 5.0 60 31-121 18-81 (82)
72 TIGR01565 homeo_ZF_HD homeobox 26.0 1.3E+02 0.0028 20.8 3.8 35 32-66 14-49 (58)
73 PF07864 DUF1651: Protein of u 25.3 47 0.001 23.8 1.6 22 137-158 47-68 (75)
74 PLN02964 phosphatidylserine de 25.2 2.6E+02 0.0056 28.5 7.2 61 34-94 181-243 (644)
75 smart00054 EFh EF-hand, calciu 24.8 1E+02 0.0023 15.5 2.7 18 77-94 11-28 (29)
76 KOG0041 Predicted Ca2+-binding 24.5 2.3E+02 0.0049 25.1 5.9 61 33-93 100-162 (244)
77 CHL00137 rps13 ribosomal prote 24.5 3.2E+02 0.0068 21.7 6.3 56 46-114 24-81 (122)
78 PRK09849 putative oxidoreducta 24.2 1E+02 0.0023 31.5 4.3 31 53-85 370-400 (702)
79 PF13348 Y_phosphatase3C: Tyro 23.7 37 0.00081 23.3 0.8 51 12-70 13-64 (68)
80 smart00530 HTH_XRE Helix-turn- 23.6 1.3E+02 0.0028 17.7 3.3 27 39-65 28-55 (56)
81 PF10036 RLL: Putative carniti 23.6 82 0.0018 27.9 3.1 28 49-76 57-85 (249)
82 PF07261 DnaB_2: Replication i 23.3 8.7 0.00019 26.9 -2.6 54 50-106 19-74 (77)
83 PHA01083 hypothetical protein 22.9 1.2E+02 0.0025 25.2 3.6 46 46-95 43-88 (149)
84 PF13624 SurA_N_3: SurA N-term 22.9 81 0.0017 24.7 2.7 60 47-107 84-144 (154)
85 PRK10945 gene expression modul 22.8 1.3E+02 0.0029 21.9 3.5 38 84-124 7-44 (72)
86 PF11772 EpuA: DNA-directed RN 22.5 62 0.0013 21.6 1.6 17 174-190 29-45 (47)
87 PF08671 SinI: Anti-repressor 22.2 93 0.002 18.8 2.2 27 163-190 4-30 (30)
88 COG3710 CadC DNA-binding winge 22.2 1.2E+02 0.0026 24.7 3.6 71 59-131 28-103 (148)
89 PF07647 SAM_2: SAM domain (St 21.3 2.6E+02 0.0056 18.6 5.2 58 48-111 5-63 (66)
90 cd04766 HTH_HspR Helix-Turn-He 21.1 85 0.0018 22.9 2.3 43 49-115 47-89 (91)
91 smart00368 LRR_RI Leucine rich 21.1 92 0.002 17.9 2.0 16 45-60 12-27 (28)
92 cd05029 S-100A6 S-100A6: S-100 21.0 2E+02 0.0043 21.0 4.3 52 80-131 26-81 (88)
93 cd00383 trans_reg_C Effector d 20.9 2E+02 0.0044 20.2 4.3 56 60-116 21-77 (95)
94 PRK05988 formate dehydrogenase 20.8 1.7E+02 0.0036 24.1 4.2 31 45-75 37-67 (156)
95 cd05026 S-100Z S-100Z: S-100Z 20.7 2E+02 0.0043 21.1 4.3 52 79-130 24-82 (93)
No 1
>KOG3077 consensus Uncharacterized conserved protein [Function unknown]
Probab=100.00 E-value=2.2e-64 Score=441.64 Aligned_cols=191 Identities=34% Similarity=0.703 Sum_probs=182.4
Q ss_pred CccCHHHHHHHHHhhcCC---CCCCHHHHHHHHHHcCCCCCCHHHHHHHHhhCCcccccccHHHHHHHhhhcCCCCHHHH
Q 027538 27 GKAKAKEIENFFDKYANG---GIIDPDGIVTLCKDLELEYTDVRILMLAWKLKAVKLGYFTQDEWETGLKTLQVNNLSKL 103 (222)
Q Consensus 27 ~~~~~~~l~~lFd~Y~d~---~~I~~dGi~~~~~dLgv~~ed~~~LvLa~~l~a~~~g~~tr~eF~~g~~~l~~dsl~~l 103 (222)
...+.+.++++|.+|+|+ +.|++|||.+||+||||+|+|+++|||||+|+|++||+|||++|+.||.+++|||+++|
T Consensus 59 ~~~s~~~l~~~f~~y~d~~d~~~i~~dgi~~fc~dlg~~p~~i~~LvlAwkl~A~~m~~Fsr~ef~~g~~~l~~dS~d~l 138 (260)
T KOG3077|consen 59 ARVSEKRLEELFNQYKDPDDDNLIGPDGIEKFCEDLGVEPEDISVLVLAWKLGAATMCEFSREEFLKGMTALGCDSIDKL 138 (260)
T ss_pred ccccHHHHHHHHHHhcCcccccccChHHHHHHHHHhCCCchhHHHHHHHHHhccchhhhhhHHHHHHHHHHcCCCcHHHH
Confidence 445788999999999998 48999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhCCCchhHHHHHhHhhhcccccccccccHHHHHHHHhHhcCCCChhhHHHHHHHHHhcCCccccChhhhh
Q 027538 104 KKAISELEKEVRTPPNFADFYSFAFRYHLTEEKQKNIDIETICELLNLVLGPQFRRQVDLLIDYLKVQSNYKVINLDQWL 183 (222)
Q Consensus 104 k~~l~~l~~~l~~~~~Fk~~Y~f~F~f~~~~~~qk~L~~e~Ai~~W~lll~~~~~~~l~~W~~Fl~~~~~~k~IskD~W~ 183 (222)
++.|+.++..++|.+.|+++|+|||+|+++ +|||+|++++||+||++||+.++| .+++|++||..+ +++.|+|||||
T Consensus 139 q~~l~~l~~~l~d~~~Fk~iY~faf~fa~e-~~qk~Ld~~~ai~~w~ll~~~~~p-ll~~w~~FL~~~-~~~~~~KDtW~ 215 (260)
T KOG3077|consen 139 QQRLDFLRSVLKDLEKFKSIYRFAFNFAKE-PGQKSLDLETAISLWKLLFGQTPP-LLDQWIQFLKDS-PNRAISKDTWN 215 (260)
T ss_pred HHHHHHHHHHHccHHHhhHHHHhhhhhccC-cCcCcCCHHHHHHHHHHHhCCCCc-hHHHHHHHHHhC-cCcccCcccHH
Confidence 999999999999999999999999999995 799999999999999999988875 899999999874 67999999999
Q ss_pred HHHHHhhhcCCCCCCCCCCCCCchhhHHHHHHHHHhhC
Q 027538 184 GIFRFCNEISFPDLENYDETQAWPLILDNFVDWLRENH 221 (222)
Q Consensus 184 ~~l~F~~~v~~~dls~YDe~~AWP~liDeFVe~~r~~~ 221 (222)
|+|+|+++++ +|+|||||+||||+||||||||+|+++
T Consensus 216 ~~l~Fs~~i~-~dlSnYDeegAWP~liDeFVe~~r~~~ 252 (260)
T KOG3077|consen 216 LLLDFSKTID-PDLSNYDEEGAWPVLIDEFVEYLRDKQ 252 (260)
T ss_pred HHHHHHHhcC-ccccCccccccchHHHHHHHHHHHHhc
Confidence 9999999986 999999999999999999999999875
No 2
>PF03556 Cullin_binding: Cullin binding; InterPro: IPR005176 The eukaryotic defective in cullin neddylation (DCN) protein family, may contribute to neddylation of cullin components of SCF-type E3 ubiquitin ligase complexes. These multi-protein complexes are required for polyubiquitination and subsequent degradation of target proteins by the 26S proteasome []. Proteins in the DCN family include: Yeast DCN1. Vertebrate DCN1-like protein 1. Vertebrate DCN1-like protein 2. Vertebrate DCN1-like protein 4. This entry represents a domain found within DCN family proteins. Its function is unknown but it has been suggested that it has the features of a basic helix-loop-helix leucine zipper (bHLH-ZIP) domain [].It is often found in association with a UBA-like domain (IPR009060 from INTERPRO).; PDB: 3TDI_A 2IS9_A 3O6B_E 3O2P_A 3BQ3_A 3TDZ_A 3TDU_B.
Probab=100.00 E-value=2.5e-45 Score=289.73 Aligned_cols=116 Identities=37% Similarity=0.740 Sum_probs=103.1
Q ss_pred HHHHHHHHHHHHHHhC-CCchhHHHHHhHhhhcccccccccccHHHHHHHHhHhcCCCChhhHHHHHHHHHhcCCccccC
Q 027538 100 LSKLKKAISELEKEVR-TPPNFADFYSFAFRYHLTEEKQKNIDIETICELLNLVLGPQFRRQVDLLIDYLKVQSNYKVIN 178 (222)
Q Consensus 100 l~~lk~~l~~l~~~l~-~~~~Fk~~Y~f~F~f~~~~~~qk~L~~e~Ai~~W~lll~~~~~~~l~~W~~Fl~~~~~~k~Is 178 (222)
|++||++|++|+++|. |+++|++||+|||+|+|+ +|||+|++|+||+||++||+++..++++.|++||+++ ++|+||
T Consensus 1 I~~lk~~l~~l~~~l~~d~~~F~~~Y~f~F~~~~~-~~qr~l~~e~Ai~~W~llf~~~~~~~l~~w~~Fl~~~-~~k~Is 78 (117)
T PF03556_consen 1 IDKLKQKLPELRKELRSDPEYFKKFYRFTFDFARE-EGQRSLPLETAIAYWRLLFSGRFFPLLDSWIEFLEEK-YKKAIS 78 (117)
T ss_dssp HHHHHHCHHHHHHHCCHSHHHHHHHHHHHHHHHS--TT-SSEEHHHHHHHHHHHTTTTSSCCHHHHHHHHHHC-T-SEEE
T ss_pred CHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHhCC-cccCCCCHHHHHHHHHHHcCCCCcHHHHHHHHHHHHc-CCcCcC
Confidence 6899999999999997 899999999999999996 6899999999999999999988446999999999875 679999
Q ss_pred hhhhhHHHHHhhhcCCCCCCCCCCCCCchhhHHHHHHHHH
Q 027538 179 LDQWLGIFRFCNEISFPDLENYDETQAWPLILDNFVDWLR 218 (222)
Q Consensus 179 kD~W~~~l~F~~~v~~~dls~YDe~~AWP~liDeFVe~~r 218 (222)
||+|+|+++|+++++ +++++|||+||||+||||||||+|
T Consensus 79 kD~W~~~l~F~~~~~-~dls~Yde~~AWP~liDeFVe~~r 117 (117)
T PF03556_consen 79 KDTWNQFLDFFKTVD-EDLSNYDEEGAWPSLIDEFVEWLR 117 (117)
T ss_dssp HHHHHHHHHHHHH-H-CCHCC--TTSSS-HHHHHHHHHHH
T ss_pred hhHHHHHHHHHHhcC-ccccCCCCCCCCcHHHHHHHHHhC
Confidence 999999999999996 999999999999999999999997
No 3
>cd00051 EFh EF-hand, calcium binding motif; A diverse superfamily of calcium sensors and calcium signal modulators; most examples in this alignment model have 2 active canonical EF hands. Ca2+ binding induces a conformational change in the EF-hand motif, leading to the activation or inactivation of target proteins. EF-hands tend to occur in pairs or higher copy numbers.
Probab=94.05 E-value=0.29 Score=31.19 Aligned_cols=59 Identities=15% Similarity=0.192 Sum_probs=49.3
Q ss_pred HHHHHHhhcCC--CCCCHHHHHHHHHHcCCCCCCHHHHHHHHhhCCcccccccHHHHHHHh
Q 027538 34 IENFFDKYANG--GIIDPDGIVTLCKDLELEYTDVRILMLAWKLKAVKLGYFTQDEWETGL 92 (222)
Q Consensus 34 l~~lFd~Y~d~--~~I~~dGi~~~~~dLgv~~ed~~~LvLa~~l~a~~~g~~tr~eF~~g~ 92 (222)
+..+|..|... +.|+.+-+...+..+|..+.+..+-.+..++....-|.++-++|+..+
T Consensus 2 ~~~~f~~~d~~~~g~l~~~e~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ef~~~~ 62 (63)
T cd00051 2 LREAFRLFDKDGDGTISADELKAALKSLGEGLSEEEIDEMIREVDKDGDGKIDFEEFLELM 62 (63)
T ss_pred HHHHHHHhCCCCCCcCcHHHHHHHHHHhCCCCCHHHHHHHHHHhCCCCCCeEeHHHHHHHh
Confidence 56788888654 789999999999999988888777778888888888999999998754
No 4
>PF13833 EF-hand_8: EF-hand domain pair; PDB: 3KF9_A 1TTX_A 1WLZ_A 1ALV_A 1NX3_A 1ALW_A 1NX2_A 1NX1_A 1NX0_A 1DF0_A ....
Probab=93.86 E-value=0.14 Score=33.85 Aligned_cols=50 Identities=16% Similarity=0.238 Sum_probs=45.3
Q ss_pred CCCCHHHHHHHHHHcCCC-CCCHHHHHHHHhhCCcccccccHHHHHHHhhh
Q 027538 45 GIIDPDGIVTLCKDLELE-YTDVRILMLAWKLKAVKLGYFTQDEWETGLKT 94 (222)
Q Consensus 45 ~~I~~dGi~~~~~dLgv~-~ed~~~LvLa~~l~a~~~g~~tr~eF~~g~~~ 94 (222)
+.|+.+.+.+.+..+|+. +.+-.+=.|...+-...-|.|+.+||+..|..
T Consensus 3 G~i~~~~~~~~l~~~g~~~~s~~e~~~l~~~~D~~~~G~I~~~EF~~~~~~ 53 (54)
T PF13833_consen 3 GKITREEFRRALSKLGIKDLSEEEVDRLFREFDTDGDGYISFDEFISMMQR 53 (54)
T ss_dssp SEEEHHHHHHHHHHTTSSSSCHHHHHHHHHHHTTSSSSSEEHHHHHHHHHH
T ss_pred CEECHHHHHHHHHHhCCCCCCHHHHHHHHHhcccCCCCCCCHHHHHHHHHh
Confidence 568889999999889999 99889999999999999999999999998875
No 5
>KOG3077 consensus Uncharacterized conserved protein [Function unknown]
Probab=92.94 E-value=0.12 Score=46.28 Aligned_cols=85 Identities=12% Similarity=0.038 Sum_probs=63.6
Q ss_pred hHHHHHhHhhhcccccccccccHHHHHHHHhHhcCCCChhhHHHHHHHHHhcCCccccChhhhhHHHHHhhhcCCCCCCC
Q 027538 120 FADFYSFAFRYHLTEEKQKNIDIETICELLNLVLGPQFRRQVDLLIDYLKVQSNYKVINLDQWLGIFRFCNEISFPDLEN 199 (222)
Q Consensus 120 Fk~~Y~f~F~f~~~~~~qk~L~~e~Ai~~W~lll~~~~~~~l~~W~~Fl~~~~~~k~IskD~W~~~l~F~~~v~~~dls~ 199 (222)
+.-.|...+.|+.+ -|....++.++|-.|++- ..++. .+..|+ |+..-+.-..+|-|+|.+.++|.+++- .|++.
T Consensus 80 ~~i~~dgi~~fc~d-lg~~p~~i~~LvlAwkl~-A~~m~-~Fsr~e-f~~g~~~l~~dS~d~lq~~l~~l~~~l-~d~~~ 154 (260)
T KOG3077|consen 80 NLIGPDGIEKFCED-LGVEPEDISVLVLAWKLG-AATMC-EFSREE-FLKGMTALGCDSIDKLQQRLDFLRSVL-KDLEK 154 (260)
T ss_pred cccChHHHHHHHHH-hCCCchhHHHHHHHHHhc-cchhh-hhhHHH-HHHHHHHcCCCcHHHHHHHHHHHHHHH-ccHHH
Confidence 78889999999985 689999999999999998 66654 243332 222222346899999999999999876 58887
Q ss_pred CCCCCCchhh
Q 027538 200 YDETQAWPLI 209 (222)
Q Consensus 200 YDe~~AWP~l 209 (222)
|++-.+||..
T Consensus 155 Fk~iY~faf~ 164 (260)
T KOG3077|consen 155 FKSIYRFAFN 164 (260)
T ss_pred hhHHHHhhhh
Confidence 7766555443
No 6
>PTZ00183 centrin; Provisional
Probab=92.41 E-value=2.2 Score=33.29 Aligned_cols=64 Identities=22% Similarity=0.301 Sum_probs=51.5
Q ss_pred HHHHHHHHHhhcCC--CCCCHHHHHHHHHHcCCCCCCHHHHHHHHhhCCcccccccHHHHHHHhhh
Q 027538 31 AKEIENFFDKYANG--GIIDPDGIVTLCKDLELEYTDVRILMLAWKLKAVKLGYFTQDEWETGLKT 94 (222)
Q Consensus 31 ~~~l~~lFd~Y~d~--~~I~~dGi~~~~~dLgv~~ed~~~LvLa~~l~a~~~g~~tr~eF~~g~~~ 94 (222)
.+++.++|..+-.. +.|+.+-+..++..+|..+....+-.+.-.+....-|.|+.++|+..+..
T Consensus 16 ~~~~~~~F~~~D~~~~G~i~~~e~~~~l~~~g~~~~~~~~~~l~~~~d~~~~g~i~~~eF~~~~~~ 81 (158)
T PTZ00183 16 KKEIREAFDLFDTDGSGTIDPKELKVAMRSLGFEPKKEEIKQMIADVDKDGSGKIDFEEFLDIMTK 81 (158)
T ss_pred HHHHHHHHHHhCCCCCCcccHHHHHHHHHHhCCCCCHHHHHHHHHHhCCCCCCcEeHHHHHHHHHH
Confidence 35677888776533 78999999999999998877766666666677778899999999998765
No 7
>PTZ00183 centrin; Provisional
Probab=92.32 E-value=0.86 Score=35.70 Aligned_cols=82 Identities=17% Similarity=0.139 Sum_probs=44.9
Q ss_pred cCHHHHHHHHHhhcCC--CCCCHHHHHHHHHHcCCCCCCHHHHHH-HHhhCCcccccccHHHHHHHhhhcCC-CCHHHHH
Q 027538 29 AKAKEIENFFDKYANG--GIIDPDGIVTLCKDLELEYTDVRILML-AWKLKAVKLGYFTQDEWETGLKTLQV-NNLSKLK 104 (222)
Q Consensus 29 ~~~~~l~~lFd~Y~d~--~~I~~dGi~~~~~dLgv~~ed~~~LvL-a~~l~a~~~g~~tr~eF~~g~~~l~~-dsl~~lk 104 (222)
.....+..+|..+-.. +.|+.+....++...--....-..+.. ...+....-|.++++||...+..+|. -+-+.++
T Consensus 50 ~~~~~~~~l~~~~d~~~~g~i~~~eF~~~~~~~~~~~~~~~~l~~~F~~~D~~~~G~i~~~e~~~~l~~~~~~l~~~~~~ 129 (158)
T PTZ00183 50 PKKEEIKQMIADVDKDGSGKIDFEEFLDIMTKKLGERDPREEILKAFRLFDDDKTGKISLKNLKRVAKELGETITDEELQ 129 (158)
T ss_pred CCHHHHHHHHHHhCCCCCCcEeHHHHHHHHHHHhcCCCcHHHHHHHHHHhCCCCCCcCcHHHHHHHHHHhCCCCCHHHHH
Confidence 3456677777776543 567777776665543111111112222 23344455578888888888877663 2344455
Q ss_pred HHHHHH
Q 027538 105 KAISEL 110 (222)
Q Consensus 105 ~~l~~l 110 (222)
..+..+
T Consensus 130 ~~~~~~ 135 (158)
T PTZ00183 130 EMIDEA 135 (158)
T ss_pred HHHHHh
Confidence 555444
No 8
>cd05031 S-100A10_like S-100A10_like: S-100A10 domain found in proteins similar to S100A10. S100A10 is a member of the S100 family of EF-hand superfamily of calcium-binding proteins. Note that the S-100 hierarchy, to which this S-100A1_like group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100 proteins are expressed exclusively in vertebrates, and are implicated in intracellular and extracellular regulatory activities. A unique feature of S100A10 is that it contains mutation in both of the calcium binding sites, making it calcium insensitive. S100A10 has been detected in brain, heart, gastrointestinal tract, kidney, liver, lung, spleen, testes, epidermis, aorta, and thymus. Structural data supports the homo- and hetero-dimeric as well as hetero-tetrameric nature of the protein. S100A10 has multiple binding partners in its calcium free state and is therefore involved in many diverse biological functions.
Probab=91.73 E-value=0.61 Score=34.62 Aligned_cols=67 Identities=13% Similarity=0.197 Sum_probs=53.8
Q ss_pred HHHHHHHHHhhcC---C-CCCCHHHHHHHHHH-----cCCCCCCHHHHHHHHhhCCcccccccHHHHHHHhhhcCC
Q 027538 31 AKEIENFFDKYAN---G-GIIDPDGIVTLCKD-----LELEYTDVRILMLAWKLKAVKLGYFTQDEWETGLKTLQV 97 (222)
Q Consensus 31 ~~~l~~lFd~Y~d---~-~~I~~dGi~~~~~d-----Lgv~~ed~~~LvLa~~l~a~~~g~~tr~eF~~g~~~l~~ 97 (222)
-..|...|..|-+ . +.|+.+-+..++.. +|..+....+--+.-.+....-|.|+-++|+..|..+++
T Consensus 7 ~~~l~~~F~~~D~~dg~dG~Is~~El~~~l~~~~g~~lg~~~s~~ei~~~~~~~D~~~dg~I~f~eF~~l~~~~~~ 82 (94)
T cd05031 7 MESLILTFHRYAGKDGDKNTLSRKELKKLMEKELSEFLKNQKDPMAVDKIMKDLDQNRDGKVNFEEFVSLVAGLSI 82 (94)
T ss_pred HHHHHHHHHHHhccCCCCCeECHHHHHHHHHHHhHHHhhccccHHHHHHHHHHhCCCCCCcCcHHHHHHHHHHHHH
Confidence 3467788999954 2 68999999998876 677877666666667778888899999999999887665
No 9
>cd00052 EH Eps15 homology domain; found in proteins implicated in endocytosis, vesicle transport, and signal transduction. The alignment contains a pair of EF-hand motifs, typically one of them is canonical and binds to Ca2+, while the other may not bind to Ca2+. A hydrophobic binding pocket is formed by residues from both EF-hand motifs. The EH domain binds to proteins containing NPF (class I), [WF]W or SWG (class II), or H[TS]F (class III) sequence motifs.
Probab=91.16 E-value=0.85 Score=30.67 Aligned_cols=59 Identities=14% Similarity=0.161 Sum_probs=43.7
Q ss_pred HHHHhhcCC--CCCCHHHHHHHHHHcCCCCCCHHHHHHHHhhCCcccccccHHHHHHHhhhcC
Q 027538 36 NFFDKYANG--GIIDPDGIVTLCKDLELEYTDVRILMLAWKLKAVKLGYFTQDEWETGLKTLQ 96 (222)
Q Consensus 36 ~lFd~Y~d~--~~I~~dGi~~~~~dLgv~~ed~~~LvLa~~l~a~~~g~~tr~eF~~g~~~l~ 96 (222)
++|..+-.+ +.|+.+.+.+++..+|++.+.+.- +.-.+....-|.|+.++|+..|..+.
T Consensus 3 ~~F~~~D~~~~G~i~~~el~~~l~~~g~~~~~~~~--i~~~~d~~~~g~i~~~ef~~~~~~~~ 63 (67)
T cd00052 3 QIFRSLDPDGDGLISGDEARPFLGKSGLPRSVLAQ--IWDLADTDKDGKLDKEEFAIAMHLIA 63 (67)
T ss_pred HHHHHhCCCCCCcCcHHHHHHHHHHcCCCHHHHHH--HHHHhcCCCCCcCCHHHHHHHHHHHH
Confidence 567777433 789999999999999984444333 34456667789999999999987643
No 10
>cd05029 S-100A6 S-100A6: S-100A6 domain found in proteins similar to S100A6. S100A6 is a member of the S100 domain family within EF-hand Ca2+-binding proteins superfamily. Note that the S-100 hierarchy, to which this S-100A6 group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100 proteins exhibit unique patterns of tissue- and cell type-specific expression and have been implicated in the Ca2+-dependent regulation of diverse physiological processes, including cell cycle regulation, differentiation, growth, and metabolic control . S100A6 is normally expressed in the G1 phase of the cell cycle in neuronal cells. The function of S100A6 remains unclear, but evidence suggests that it is involved in cell cycle regulation and exocytosis. S100A6 may also be involved in tumorigenesis; the protein is overexpressed in several tumors. Ca2+ binding to S100A6 leads to a conformational change in the protein, which exposes a hydrophobic surface for interact
Probab=90.79 E-value=1.1 Score=33.23 Aligned_cols=64 Identities=20% Similarity=0.208 Sum_probs=51.8
Q ss_pred HHHHHHHhhcCC----CCCCHHHHHHHHHH---cCCCCCCHHHHHHHHhhCCcccccccHHHHHHHhhhcC
Q 027538 33 EIENFFDKYANG----GIIDPDGIVTLCKD---LELEYTDVRILMLAWKLKAVKLGYFTQDEWETGLKTLQ 96 (222)
Q Consensus 33 ~l~~lFd~Y~d~----~~I~~dGi~~~~~d---Lgv~~ed~~~LvLa~~l~a~~~g~~tr~eF~~g~~~l~ 96 (222)
.|.++|.+|... +.|+.+.+.+++.. +|..+.+-.+--+-..+....-|.|+-+||+.-|..+-
T Consensus 11 ~~i~~F~~y~~~~~~~g~Is~~EL~~~l~~~~~lg~k~t~~ev~~m~~~~D~d~dG~Idf~EFv~lm~~l~ 81 (88)
T cd05029 11 LLVAIFHKYSGREGDKNTLSKKELKELIQKELTIGSKLQDAEIAKLMEDLDRNKDQEVNFQEYVTFLGALA 81 (88)
T ss_pred HHHHHHHHHHccCCCCCEECHHHHHHHHHHHHhcCCCCCHHHHHHHHHHhcCCCCCCCcHHHHHHHHHHHH
Confidence 466899999862 58999999999974 68777666666677777888889999999998877653
No 11
>smart00027 EH Eps15 homology domain. Pair of EF hand motifs that recognise proteins containing Asn-Pro-Phe (NPF) sequences.
Probab=89.67 E-value=1.1 Score=33.20 Aligned_cols=63 Identities=13% Similarity=0.132 Sum_probs=48.1
Q ss_pred HHHHHHHHHhhcCC--CCCCHHHHHHHHHHcCCCCCCHHHHHHHHhhCCcccccccHHHHHHHhhhc
Q 027538 31 AKEIENFFDKYANG--GIIDPDGIVTLCKDLELEYTDVRILMLAWKLKAVKLGYFTQDEWETGLKTL 95 (222)
Q Consensus 31 ~~~l~~lFd~Y~d~--~~I~~dGi~~~~~dLgv~~ed~~~LvLa~~l~a~~~g~~tr~eF~~g~~~l 95 (222)
...+.+.|..+-.+ +.|+.+.+.+++..+|++.+.+.-+. -.+....-|.|+.+||+..|..+
T Consensus 9 ~~~l~~~F~~~D~d~~G~Is~~el~~~l~~~~~~~~ev~~i~--~~~d~~~~g~I~~~eF~~~~~~~ 73 (96)
T smart00027 9 KAKYEQIFRSLDKNQDGTVTGAQAKPILLKSGLPQTLLAKIW--NLADIDNDGELDKDEFALAMHLI 73 (96)
T ss_pred HHHHHHHHHHhCCCCCCeEeHHHHHHHHHHcCCCHHHHHHHH--HHhcCCCCCCcCHHHHHHHHHHH
Confidence 45677888888643 78999999999999998766555433 34566677999999999988764
No 12
>PTZ00184 calmodulin; Provisional
Probab=89.39 E-value=8 Score=29.53 Aligned_cols=64 Identities=17% Similarity=0.199 Sum_probs=52.2
Q ss_pred HHHHHHHHHhhcCC--CCCCHHHHHHHHHHcCCCCCCHHHHHHHHhhCCcccccccHHHHHHHhhh
Q 027538 31 AKEIENFFDKYANG--GIIDPDGIVTLCKDLELEYTDVRILMLAWKLKAVKLGYFTQDEWETGLKT 94 (222)
Q Consensus 31 ~~~l~~lFd~Y~d~--~~I~~dGi~~~~~dLgv~~ed~~~LvLa~~l~a~~~g~~tr~eF~~g~~~ 94 (222)
.+++.+.|..+-.. +.|+.+.+..++..+|.++.+..+-.+.-.+....-|.++.++|+..+..
T Consensus 10 ~~~~~~~F~~~D~~~~G~i~~~e~~~~l~~~~~~~~~~~~~~~~~~~d~~~~g~i~~~ef~~~l~~ 75 (149)
T PTZ00184 10 IAEFKEAFSLFDKDGDGTITTKELGTVMRSLGQNPTEAELQDMINEVDADGNGTIDFPEFLTLMAR 75 (149)
T ss_pred HHHHHHHHHHHcCCCCCcCCHHHHHHHHHHhCCCCCHHHHHHHHHhcCcCCCCcCcHHHHHHHHHH
Confidence 35667788776332 78999999999999999988777777777788778899999999988875
No 13
>cd05030 calgranulins Calgranulins: S-100 domain found in proteins belonging to the Calgranulin subgroup of the S100 family of EF-hand calcium-modulated proteins, including S100A8, S100A9, and S100A12 . Note that the S-100 hierarchy, to which this Calgranulin group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. These proteins are expressed mainly in granulocytes, and are involved in inflammation, allergy, and neuritogenesis, as well as in host-parasite response. Calgranulins are modulated not only by calcium, but also by other metals such as zinc and copper. Structural data suggested that calgranulins may exist in multiple structural forms, homodimers, as well as hetero-oligomers. For example, the S100A8/S100A9 complex called calprotectin plays important roles in the regulation of inflammatory processes, wound repair, and regulating zinc-dependent enzymes as well as microbial growth.
Probab=89.32 E-value=1 Score=33.24 Aligned_cols=63 Identities=16% Similarity=0.143 Sum_probs=46.8
Q ss_pred HHHHHHHhhcCC----CCCCHHHHHHHHH-HcCCCCC----CHHHHHHHHhhCCcccccccHHHHHHHhhhc
Q 027538 33 EIENFFDKYANG----GIIDPDGIVTLCK-DLELEYT----DVRILMLAWKLKAVKLGYFTQDEWETGLKTL 95 (222)
Q Consensus 33 ~l~~lFd~Y~d~----~~I~~dGi~~~~~-dLgv~~e----d~~~LvLa~~l~a~~~g~~tr~eF~~g~~~l 95 (222)
.|..+|.+|+.. +.|+.+.+..++. .+|-.+. +-.+=-+.-.+....-|.|+-++|+..+..+
T Consensus 9 ~~~~~f~~y~~~~~~~~~Is~~El~~ll~~~~g~~~t~~~~~~~v~~i~~~~D~d~dG~I~f~eF~~~~~~~ 80 (88)
T cd05030 9 TIINVFHQYSVRKGHPDTLYKKEFKQLVEKELPNFLKKEKNQKAIDKIFEDLDTNQDGQLSFEEFLVLVIKV 80 (88)
T ss_pred HHHHHHHHHhccCCCcccCCHHHHHHHHHHHhhHhhccCCCHHHHHHHHHHcCCCCCCcCcHHHHHHHHHHH
Confidence 566899999854 5899999999997 4553332 3444445555677778999999999988875
No 14
>PF13499 EF-hand_7: EF-hand domain pair; PDB: 1TCF_A 2TN4_A 1TN4_A 1A2X_A 2CT9_B 2OTG_B 2OS8_B 1SNL_A 3O4Y_A 3J04_E ....
Probab=89.13 E-value=1.3 Score=29.96 Aligned_cols=60 Identities=18% Similarity=0.256 Sum_probs=39.2
Q ss_pred HHHHHHHhhcCC--CCCCHHHHHHHHHHcCCCCCC--H--HHHHHHHhhCCcccccccHHHHHHHh
Q 027538 33 EIENFFDKYANG--GIIDPDGIVTLCKDLELEYTD--V--RILMLAWKLKAVKLGYFTQDEWETGL 92 (222)
Q Consensus 33 ~l~~lFd~Y~d~--~~I~~dGi~~~~~dLgv~~ed--~--~~LvLa~~l~a~~~g~~tr~eF~~g~ 92 (222)
+|.++|+.|=.. +.|+.+-+.+++..++....+ + .+--+...+-...-|.|+.+||++.|
T Consensus 1 ~l~~~F~~~D~d~~G~i~~~el~~~~~~~~~~~~~~~~~~~~~~~~~~~D~d~dG~i~~~Ef~~~~ 66 (66)
T PF13499_consen 1 RLKEAFKKFDKDGDGYISKEELRRALKHLGRDMSDEESDEMIDQIFREFDTDGDGRISFDEFLNFM 66 (66)
T ss_dssp HHHHHHHHHSTTSSSEEEHHHHHHHHHHTTSHSTHHHHHHHHHHHHHHHTTTSSSSEEHHHHHHHH
T ss_pred CHHHHHHHHcCCccCCCCHHHHHHHHHHhcccccHHHHHHHHHHHHHHhCCCCcCCCcHHHHhccC
Confidence 367788888544 788888888888888876422 1 11122333445556888888888654
No 15
>PTZ00184 calmodulin; Provisional
Probab=88.09 E-value=2.3 Score=32.60 Aligned_cols=98 Identities=14% Similarity=0.185 Sum_probs=57.5
Q ss_pred cCHHHHHHHHHhhcCC--CCCCHHHHHHHHHHc-CCCCCCHHHHHHHHhhCCcccccccHHHHHHHhhhcCCC-CHHHHH
Q 027538 29 AKAKEIENFFDKYANG--GIIDPDGIVTLCKDL-ELEYTDVRILMLAWKLKAVKLGYFTQDEWETGLKTLQVN-NLSKLK 104 (222)
Q Consensus 29 ~~~~~l~~lFd~Y~d~--~~I~~dGi~~~~~dL-gv~~ed~~~LvLa~~l~a~~~g~~tr~eF~~g~~~l~~d-sl~~lk 104 (222)
.....+.++|..+-.+ +.|+.+-...++... ........+-.+...+....-|.+++++|..++..+|.. +-+.++
T Consensus 44 ~~~~~~~~~~~~~d~~~~g~i~~~ef~~~l~~~~~~~~~~~~~~~~F~~~D~~~~g~i~~~e~~~~l~~~~~~~~~~~~~ 123 (149)
T PTZ00184 44 PTEAELQDMINEVDADGNGTIDFPEFLTLMARKMKDTDSEEEIKEAFKVFDRDGNGFISAAELRHVMTNLGEKLTDEEVD 123 (149)
T ss_pred CCHHHHHHHHHhcCcCCCCcCcHHHHHHHHHHhccCCcHHHHHHHHHHhhCCCCCCeEeHHHHHHHHHHHCCCCCHHHHH
Confidence 4567888888888654 678888777666543 222222222233334444556999999999999988764 444455
Q ss_pred HHHHHHHHHhCCCchhHHHHHh
Q 027538 105 KAISELEKEVRTPPNFADFYSF 126 (222)
Q Consensus 105 ~~l~~l~~~l~~~~~Fk~~Y~f 126 (222)
..+..+...-.+.-.|.+|..+
T Consensus 124 ~~~~~~d~~~~g~i~~~ef~~~ 145 (149)
T PTZ00184 124 EMIREADVDGDGQINYEEFVKM 145 (149)
T ss_pred HHHHhcCCCCCCcCcHHHHHHH
Confidence 5554443222223345555543
No 16
>cd00213 S-100 S-100: S-100 domain, which represents the largest family within the superfamily of proteins carrying the Ca-binding EF-hand motif. Note that this S-100 hierarchy contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100 proteins are expressed exclusively in vertebrates, and are implicated in intracellular and extracellular regulatory activities. Intracellularly, S100 proteins act as Ca-signaling or Ca-buffering proteins. The most unusual characteristic of certain S100 proteins is their occurrence in extracellular space, where they act in a cytokine-like manner through RAGE, the receptor for advanced glycation products. Structural data suggest that many S100 members exist within cells as homo- or heterodimers and even oligomers; oligomerization contributes to their functional diversification. Upon binding calcium, most S100 proteins change conformation to a more open structure exposing a hydrophobic cleft. This hydrophobic surface represents th
Probab=85.76 E-value=3.8 Score=29.58 Aligned_cols=64 Identities=19% Similarity=0.201 Sum_probs=47.6
Q ss_pred HHHHHHHHhhcC--C--CCCCHHHHHHHHHH-cCCCC----CCHHHHHHHHhhCCcccccccHHHHHHHhhhc
Q 027538 32 KEIENFFDKYAN--G--GIIDPDGIVTLCKD-LELEY----TDVRILMLAWKLKAVKLGYFTQDEWETGLKTL 95 (222)
Q Consensus 32 ~~l~~lFd~Y~d--~--~~I~~dGi~~~~~d-Lgv~~----ed~~~LvLa~~l~a~~~g~~tr~eF~~g~~~l 95 (222)
+.+.+.|..|-. . +.|+.+.+.+++.. +|..+ ....+=-+.-.+....-|.|+-++|+..|..+
T Consensus 8 ~~l~~~F~~~D~~~~~~G~Is~~el~~~l~~~~g~~~~~~~~~~ei~~i~~~~d~~~~g~I~f~eF~~~~~~~ 80 (88)
T cd00213 8 ETIIDVFHKYSGKEGDKDTLSKKELKELLETELPNFLKNQKDPEAVDKIMKDLDVNKDGKVDFQEFLVLIGKL 80 (88)
T ss_pred HHHHHHHHHHhhccCCCCcCcHHHHHHHHHHHhhhhccCCCCHHHHHHHHHHhccCCCCcCcHHHHHHHHHHH
Confidence 456677888866 4 78999999999976 56433 24444445556677788999999999988765
No 17
>KOG0027 consensus Calmodulin and related proteins (EF-Hand superfamily) [Signal transduction mechanisms]
Probab=85.43 E-value=7.7 Score=31.00 Aligned_cols=68 Identities=15% Similarity=0.177 Sum_probs=59.7
Q ss_pred CHHHHHHHHHhhcCC--CCCCHHHHHHHHHHcCCCCCCHHHHHHHHhhCCcccccccHHHHHHHhhhcCC
Q 027538 30 KAKEIENFFDKYANG--GIIDPDGIVTLCKDLELEYTDVRILMLAWKLKAVKLGYFTQDEWETGLKTLQV 97 (222)
Q Consensus 30 ~~~~l~~lFd~Y~d~--~~I~~dGi~~~~~dLgv~~ed~~~LvLa~~l~a~~~g~~tr~eF~~g~~~l~~ 97 (222)
...++.+.|+.+--. +.|..+=+...+..||.+|..-.+-.+...+....-|.|..++|+.-|...+.
T Consensus 6 ~~~el~~~F~~fD~d~~G~i~~~el~~~lr~lg~~~t~~el~~~~~~~D~dg~g~I~~~eF~~l~~~~~~ 75 (151)
T KOG0027|consen 6 QILELKEAFQLFDKDGDGKISVEELGAVLRSLGQNPTEEELRDLIKEIDLDGDGTIDFEEFLDLMEKLGE 75 (151)
T ss_pred HHHHHHHHHHHHCCCCCCcccHHHHHHHHHHcCCCCCHHHHHHHHHHhCCCCCCeEcHHHHHHHHHhhhc
Confidence 346788888888543 78999999999999999999999999999999999999999999999987654
No 18
>KOG0036 consensus Predicted mitochondrial carrier protein [Nucleotide transport and metabolism]
Probab=81.96 E-value=4.4 Score=38.85 Aligned_cols=80 Identities=20% Similarity=0.247 Sum_probs=59.6
Q ss_pred HHHHHHHHhhcCC--CCCCHHHHHHHHHHcCCCCCCHHHHHHHHhhCCcccccccHHHHHHHhhhcCCCCHHHHHHHHHH
Q 027538 32 KEIENFFDKYANG--GIIDPDGIVTLCKDLELEYTDVRILMLAWKLKAVKLGYFTQDEWETGLKTLQVNNLSKLKKAISE 109 (222)
Q Consensus 32 ~~l~~lFd~Y~d~--~~I~~dGi~~~~~dLgv~~ed~~~LvLa~~l~a~~~g~~tr~eF~~g~~~l~~dsl~~lk~~l~~ 109 (222)
.+|-.+|.+-.-+ +.|++..|.++|.|+|++++|...--+...+--..-+.|..+||.+-+.-.- .+.|..-+..
T Consensus 82 ~~l~~~F~~iD~~hdG~i~~~Ei~~~l~~~gi~l~de~~~k~~e~~d~~g~~~I~~~e~rd~~ll~p---~s~i~di~~~ 158 (463)
T KOG0036|consen 82 LELYRIFQSIDLEHDGKIDPNEIWRYLKDLGIQLSDEKAAKFFEHMDKDGKATIDLEEWRDHLLLYP---ESDLEDIYDF 158 (463)
T ss_pred HHHHHHHhhhccccCCccCHHHHHHHHHHhCCccCHHHHHHHHHHhccCCCeeeccHHHHhhhhcCC---hhHHHHHHHh
Confidence 3444555554433 6899999999999999999999988888888777788999999998665433 5555555555
Q ss_pred HHHHh
Q 027538 110 LEKEV 114 (222)
Q Consensus 110 l~~~l 114 (222)
|+..+
T Consensus 159 W~h~~ 163 (463)
T KOG0036|consen 159 WRHVL 163 (463)
T ss_pred hhhhe
Confidence 55554
No 19
>COG5126 FRQ1 Ca2+-binding protein (EF-Hand superfamily) [Signal transduction mechanisms / Cytoskeleton / Cell division and chromosome partitioning / General function prediction only]
Probab=81.21 E-value=7.4 Score=32.51 Aligned_cols=68 Identities=18% Similarity=0.216 Sum_probs=51.8
Q ss_pred CccCHHHHHHHHHhhcCC--CCCCHHHHHHHHHHcCCCCCCHHHHHHHHhhCCcccccccHHHHHHHhhh
Q 027538 27 GKAKAKEIENFFDKYANG--GIIDPDGIVTLCKDLELEYTDVRILMLAWKLKAVKLGYFTQDEWETGLKT 94 (222)
Q Consensus 27 ~~~~~~~l~~lFd~Y~d~--~~I~~dGi~~~~~dLgv~~ed~~~LvLa~~l~a~~~g~~tr~eF~~g~~~ 94 (222)
....+.+|...|+-|=.+ +.|+.+-+...++.||-...+-.+=-|.-.+.-..-|.|+.++|++.+..
T Consensus 87 ~~~~~Eel~~aF~~fD~d~dG~Is~~eL~~vl~~lge~~~deev~~ll~~~d~d~dG~i~~~eF~~~~~~ 156 (160)
T COG5126 87 RGDKEEELREAFKLFDKDHDGYISIGELRRVLKSLGERLSDEEVEKLLKEYDEDGDGEIDYEEFKKLIKD 156 (160)
T ss_pred cCCcHHHHHHHHHHhCCCCCceecHHHHHHHHHhhcccCCHHHHHHHHHhcCCCCCceEeHHHHHHHHhc
Confidence 344577888888888655 68888888888888888887777766666666667788888888887754
No 20
>cd05022 S-100A13 S-100A13: S-100A13 domain found in proteins similar to S100A13. S100A13 is a calcium-binding protein belonging to a large S100 vertebrate-specific protein family within the EF-hand superfamily of calcium-binding proteins. Note that the S-100 hierarchy, to which this S-100A13 group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100A13 is involved in the cellular export of interleukin-1 (IL-1) and of fibroblast growth factor-1 (FGF-1), which plays an important role in angiogenesis and tissue regeneration. Export is based on the CuII-dependent formation of multiprotein complexes containing the S100A13 protein. Assembly of these complexes occurs near the inner surface of the plasma membrane. Binding of two Ca(II) ions per monomer triggers key conformational changes leading to the creation of two identical and symmetrical Cu(II)-binding sites on the surface of the protein, close to the interface between the two monomers. These Cu
Probab=79.66 E-value=10 Score=28.28 Aligned_cols=64 Identities=14% Similarity=0.085 Sum_probs=47.5
Q ss_pred HHHHHHHHhhcC-C--CCCCHHHHHHHHHH-cCCCCCC-HHHHHHHHhhCCcccccccHHHHHHHhhhc
Q 027538 32 KEIENFFDKYAN-G--GIIDPDGIVTLCKD-LELEYTD-VRILMLAWKLKAVKLGYFTQDEWETGLKTL 95 (222)
Q Consensus 32 ~~l~~lFd~Y~d-~--~~I~~dGi~~~~~d-Lgv~~ed-~~~LvLa~~l~a~~~g~~tr~eF~~g~~~l 95 (222)
..|.+.|..|.. . +.|+.+.+..++.. ||-..++ -.+=-+.-.+....=|.|+-+||+.-|..+
T Consensus 8 ~~l~~~F~~fd~~~~~g~i~~~ELk~ll~~elg~~ls~~~~v~~mi~~~D~d~DG~I~F~EF~~l~~~l 76 (89)
T cd05022 8 ETLVSNFHKASVKGGKESLTASEFQELLTQQLPHLLKDVEGLEEKMKNLDVNQDSKLSFEEFWELIGEL 76 (89)
T ss_pred HHHHHHHHHHhCCCCCCeECHHHHHHHHHHHhhhhccCHHHHHHHHHHhCCCCCCCCcHHHHHHHHHHH
Confidence 356788999976 4 78999999999988 8844444 444444455666777999999998877765
No 21
>cd05025 S-100A1 S-100A1: S-100A1 domain found in proteins similar to S100A1. S100A1 is a calcium-binding protein belonging to a large S100 vertebrate-specific protein family within the EF-hand superfamily of calcium-binding proteins. Note that the S-100 hierarchy, to which this S-100A1 group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. As is the case with many other members of S100 protein family, S100A1 is implicated in intracellular and extracellular regulatory activities, including interaction with myosin-associated twitchin kinase, actin-capping protein CapZ, sinapsin I, and tubulin. Structural data suggests that S100A1 proteins exist within cells as antiparallel homodimers, while heterodimers with S100A4 and S100B also has been reported. Upon binding calcium S100A1 changes conformation to expose a hydrophobic cleft which is the interaction site of S100A1 with its more that 20 known target proteins.
Probab=79.42 E-value=12 Score=27.38 Aligned_cols=65 Identities=14% Similarity=0.115 Sum_probs=48.0
Q ss_pred HHHHHHHHHhhc-C-C-C-CCCHHHHHHHHHH-cCC----CCCCHHHHHHHHhhCCcccccccHHHHHHHhhhc
Q 027538 31 AKEIENFFDKYA-N-G-G-IIDPDGIVTLCKD-LEL----EYTDVRILMLAWKLKAVKLGYFTQDEWETGLKTL 95 (222)
Q Consensus 31 ~~~l~~lFd~Y~-d-~-~-~I~~dGi~~~~~d-Lgv----~~ed~~~LvLa~~l~a~~~g~~tr~eF~~g~~~l 95 (222)
...|.+.|+.|- . . + .|+.+-+.+++.. +|. .|....+=-+...+....-|.|+-++|+.-+..+
T Consensus 8 ~~~l~~~F~~fDd~dg~G~~Is~~El~~~l~~~lg~~~~~~~s~~~v~~i~~~~D~d~~G~I~f~eF~~l~~~~ 81 (92)
T cd05025 8 METLINVFHAHSGKEGDKYKLSKKELKDLLQTELSDFLDAQKDADAVDKIMKELDENGDGEVDFQEFVVLVAAL 81 (92)
T ss_pred HHHHHHHHHHHhcccCCCCeECHHHHHHHHHHHHHHHccCCCCHHHHHHHHHHHCCCCCCcCcHHHHHHHHHHH
Confidence 356788999995 2 2 5 4999999999975 653 4455555555666777888999999999877664
No 22
>KOG0027 consensus Calmodulin and related proteins (EF-Hand superfamily) [Signal transduction mechanisms]
Probab=79.06 E-value=24 Score=28.11 Aligned_cols=83 Identities=20% Similarity=0.253 Sum_probs=61.6
Q ss_pred CCccCHHHHHHHHHhhcCC--CCCCHHHHHHHHHHcCCCCCCH----HHHHHHHh-hCCcccccccHHHHHHHhhhcCC-
Q 027538 26 SGKAKAKEIENFFDKYANG--GIIDPDGIVTLCKDLELEYTDV----RILMLAWK-LKAVKLGYFTQDEWETGLKTLQV- 97 (222)
Q Consensus 26 ~~~~~~~~l~~lFd~Y~d~--~~I~~dGi~~~~~dLgv~~ed~----~~LvLa~~-l~a~~~g~~tr~eF~~g~~~l~~- 97 (222)
+..+...++..+++++-.+ +.|+.+....++...+....+. ..+.=|+. +-....|.||.+|+..-|..+|-
T Consensus 38 g~~~t~~el~~~~~~~D~dg~g~I~~~eF~~l~~~~~~~~~~~~~~~~el~eaF~~fD~d~~G~Is~~el~~~l~~lg~~ 117 (151)
T KOG0027|consen 38 GQNPTEEELRDLIKEIDLDGDGTIDFEEFLDLMEKLGEEKTDEEASSEELKEAFRVFDKDGDGFISASELKKVLTSLGEK 117 (151)
T ss_pred CCCCCHHHHHHHHHHhCCCCCCeEcHHHHHHHHHhhhcccccccccHHHHHHHHHHHccCCCCcCcHHHHHHHHHHhCCc
Confidence 4556788999999999754 7899999999999888876543 35555554 56667899999999999999884
Q ss_pred CCHHHHHHHHH
Q 027538 98 NNLSKLKKAIS 108 (222)
Q Consensus 98 dsl~~lk~~l~ 108 (222)
.|.+.++..+.
T Consensus 118 ~~~~e~~~mi~ 128 (151)
T KOG0027|consen 118 LTDEECKEMIR 128 (151)
T ss_pred CCHHHHHHHHH
Confidence 34333333333
No 23
>KOG0028 consensus Ca2+-binding protein (centrin/caltractin), EF-Hand superfamily protein [Cytoskeleton; Cell cycle control, cell division, chromosome partitioning]
Probab=78.79 E-value=23 Score=29.95 Aligned_cols=101 Identities=18% Similarity=0.229 Sum_probs=73.1
Q ss_pred HHHHHHHHHhhcCC--CCCCHHHHHHHHHHcCCCCCCHHHHHHHHhhCCcccccccHHHHHHHhhh-cC-CCCHHHHHHH
Q 027538 31 AKEIENFFDKYANG--GIIDPDGIVTLCKDLELEYTDVRILMLAWKLKAVKLGYFTQDEWETGLKT-LQ-VNNLSKLKKA 106 (222)
Q Consensus 31 ~~~l~~lFd~Y~d~--~~I~~dGi~~~~~dLgv~~ed~~~LvLa~~l~a~~~g~~tr~eF~~g~~~-l~-~dsl~~lk~~ 106 (222)
..+++.-|+-+-.. +.|+.+++---.-.||.+|..-.++-|.--......|.|+-++|+.-|.. ++ -||.+.++..
T Consensus 32 ~q~i~e~f~lfd~~~~g~iD~~EL~vAmralGFE~~k~ei~kll~d~dk~~~g~i~fe~f~~~mt~k~~e~dt~eEi~~a 111 (172)
T KOG0028|consen 32 KQEIKEAFELFDPDMAGKIDVEELKVAMRALGFEPKKEEILKLLADVDKEGSGKITFEDFRRVMTVKLGERDTKEEIKKA 111 (172)
T ss_pred HhhHHHHHHhhccCCCCcccHHHHHHHHHHcCCCcchHHHHHHHHhhhhccCceechHHHHHHHHHHHhccCcHHHHHHH
Confidence 35666666666543 89999999666778999999999998888887778899999999999866 33 4688888888
Q ss_pred HHHHHHHhCCCchhHHHHHhHhhhc
Q 027538 107 ISELEKEVRTPPNFADFYSFAFRYH 131 (222)
Q Consensus 107 l~~l~~~l~~~~~Fk~~Y~f~F~f~ 131 (222)
+...+..=...-.++.|-+-++..+
T Consensus 112 frl~D~D~~Gkis~~~lkrvakeLg 136 (172)
T KOG0028|consen 112 FRLFDDDKTGKISQRNLKRVAKELG 136 (172)
T ss_pred HHcccccCCCCcCHHHHHHHHHHhC
Confidence 7655444333333455544444443
No 24
>cd05027 S-100B S-100B: S-100B domain found in proteins similar to S100B. S100B is a calcium-binding protein belonging to a large S100 vertebrate-specific protein family within the EF-hand superfamily of calcium-binding proteins. Note that the S-100 hierarchy, to which this S-100B group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100B is most abundant in glial cells of the central nervous system, predominately in astrocytes. S100B is involved in signal transduction via the inhibition of protein phoshorylation, regulation of enzyme activity and by affecting the calcium homeostasis. Upon calcium binding the S100B homodimer changes conformation to expose a hydrophobic cleft, which represents the interaction site of S100B with its more than 20 known target proteins. These target proteins include several cellular architecture proteins such as tubulin and GFAP; S100B can inhibit polymerization of these oligomeric molecules. Furthermore, S100B i
Probab=78.57 E-value=11 Score=27.85 Aligned_cols=64 Identities=14% Similarity=0.137 Sum_probs=49.1
Q ss_pred HHHHHHHHhhc--CC-C-CCCHHHHHHHHHH-----cCCCCCCHHHHHHHHhhCCcccccccHHHHHHHhhhc
Q 027538 32 KEIENFFDKYA--NG-G-IIDPDGIVTLCKD-----LELEYTDVRILMLAWKLKAVKLGYFTQDEWETGLKTL 95 (222)
Q Consensus 32 ~~l~~lFd~Y~--d~-~-~I~~dGi~~~~~d-----Lgv~~ed~~~LvLa~~l~a~~~g~~tr~eF~~g~~~l 95 (222)
..|.+.|..|. +. + .|+.+-+..++.. +|-.++.-.+=-+.-.+....-|.|+-++|+.-+..+
T Consensus 8 ~~l~~aF~~fD~~dgdG~~I~~~eL~~ll~~~~~~~lg~~~~~~~v~~~i~~~D~n~dG~v~f~eF~~li~~~ 80 (88)
T cd05027 8 VALIDVFHQYSGREGDKHKLKKSELKELINNELSHFLEEIKEQEVVDKVMETLDSDGDGECDFQEFMAFVAMV 80 (88)
T ss_pred HHHHHHHHHhcccCCCcCEECHHHHHHHHHHHhHHHhcCCCCHHHHHHHHHHhCCCCCCcCcHHHHHHHHHHH
Confidence 46778999995 33 5 5999999999999 9977655444445556677888999999998776553
No 25
>cd05023 S-100A11 S-100A11: S-100A11 domain found in proteins similar to S100A11. S100A11 is a member of the S-100 domain family within EF-hand Ca2+-binding proteins superfamily. Note that the S-100 hierarchy, to which this S-100A11 group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100 proteins exhibit unique patterns of tissue- and cell type-specific expression and have been implicated in the Ca2+-dependent regulation of diverse physiological processes, including cell cycle regulation, differentiation, growth, and metabolic control . S100 proteins have also been associated with a variety of pathological events, including neoplastic transformation and neurodegenerative diseases such as Alzheimer's, usually via over expression of the protein. S100A11 is expressed in smooth muscle and other tissues and involves in calcium-dependent membrane aggregation, which is important for cell vesiculation . As is the case for many other S100 proteins, S
Probab=77.75 E-value=12 Score=27.74 Aligned_cols=65 Identities=14% Similarity=0.101 Sum_probs=46.0
Q ss_pred HHHHHHHHhhcCC----CCCCHHHHHHHHHHc-----CCCCCCHHHHHHHHhhCCcccccccHHHHHHHhhhcC
Q 027538 32 KEIENFFDKYANG----GIIDPDGIVTLCKDL-----ELEYTDVRILMLAWKLKAVKLGYFTQDEWETGLKTLQ 96 (222)
Q Consensus 32 ~~l~~lFd~Y~d~----~~I~~dGi~~~~~dL-----gv~~ed~~~LvLa~~l~a~~~g~~tr~eF~~g~~~l~ 96 (222)
..|.++|.+|.+. +.|+.+.+..+++.- +-..++..+--+.-.+....=|.|+-+||+.-+..+-
T Consensus 9 ~~l~~~F~~y~~~dg~~~~Ls~~Elk~ll~~e~~~~~~~~~~~~~~~~ll~~~D~d~DG~I~f~EF~~l~~~l~ 82 (89)
T cd05023 9 ESLIAVFQKYAGKDGDSYQLSKTEFLSFMNTELASFTKNQKDPGVLDRMMKKLDLNSDGQLDFQEFLNLIGGLA 82 (89)
T ss_pred HHHHHHHHHHhccCCCcCeECHHHHHHHHHHhhhHhhcCCCCHHHHHHHHHHcCCCCCCcCcHHHHHHHHHHHH
Confidence 4567899998854 279999999999875 2222333444455566777779999999998777653
No 26
>PF13833 EF-hand_8: EF-hand domain pair; PDB: 3KF9_A 1TTX_A 1WLZ_A 1ALV_A 1NX3_A 1ALW_A 1NX2_A 1NX1_A 1NX0_A 1DF0_A ....
Probab=77.50 E-value=5 Score=26.15 Aligned_cols=47 Identities=19% Similarity=0.373 Sum_probs=30.4
Q ss_pred cccccHHHHHHHhhhcCCC--CHHHHHHHHHHHHHHhCCCchhHHHHHh
Q 027538 80 LGYFTQDEWETGLKTLQVN--NLSKLKKAISELEKEVRTPPNFADFYSF 126 (222)
Q Consensus 80 ~g~~tr~eF~~g~~~l~~d--sl~~lk~~l~~l~~~l~~~~~Fk~~Y~f 126 (222)
-|.|++++|...+..+|.. |.+.+...+...+..=..--.|.+|..+
T Consensus 2 ~G~i~~~~~~~~l~~~g~~~~s~~e~~~l~~~~D~~~~G~I~~~EF~~~ 50 (54)
T PF13833_consen 2 DGKITREEFRRALSKLGIKDLSEEEVDRLFREFDTDGDGYISFDEFISM 50 (54)
T ss_dssp SSEEEHHHHHHHHHHTTSSSSCHHHHHHHHHHHTTSSSSSEEHHHHHHH
T ss_pred cCEECHHHHHHHHHHhCCCCCCHHHHHHHHHhcccCCCCCCCHHHHHHH
Confidence 4899999999999877765 5555555555554443333445555543
No 27
>COG5126 FRQ1 Ca2+-binding protein (EF-Hand superfamily) [Signal transduction mechanisms / Cytoskeleton / Cell division and chromosome partitioning / General function prediction only]
Probab=77.46 E-value=18 Score=30.15 Aligned_cols=80 Identities=18% Similarity=0.259 Sum_probs=63.5
Q ss_pred HHHHHHHhhcCC--CCCCHHHHHHHHHHcCCCCCCHHHHHHHHhhCCcccccccHHHHHHHhhhcC--CCCHHHHHHHHH
Q 027538 33 EIENFFDKYANG--GIIDPDGIVTLCKDLELEYTDVRILMLAWKLKAVKLGYFTQDEWETGLKTLQ--VNNLSKLKKAIS 108 (222)
Q Consensus 33 ~l~~lFd~Y~d~--~~I~~dGi~~~~~dLgv~~ed~~~LvLa~~l~a~~~g~~tr~eF~~g~~~l~--~dsl~~lk~~l~ 108 (222)
++.+.|..+--. +.|+-+-+......||.+|.+..+.-|.--+.+ .-|.++-.+|+..|...- -++-++|+..+.
T Consensus 21 ~lkeaF~l~D~d~~G~I~~~el~~ilr~lg~~~s~~ei~~l~~~~d~-~~~~idf~~Fl~~ms~~~~~~~~~Eel~~aF~ 99 (160)
T COG5126 21 ELKEAFQLFDRDSDGLIDRNELGKILRSLGFNPSEAEINKLFEEIDA-GNETVDFPEFLTVMSVKLKRGDKEEELREAFK 99 (160)
T ss_pred HHHHHHHHhCcCCCCCCcHHHHHHHHHHcCCCCcHHHHHHHHHhccC-CCCccCHHHHHHHHHHHhccCCcHHHHHHHHH
Confidence 444445554432 799999999999999999999999999999998 778999999999997743 355778877776
Q ss_pred HHHHH
Q 027538 109 ELEKE 113 (222)
Q Consensus 109 ~l~~~ 113 (222)
-.+..
T Consensus 100 ~fD~d 104 (160)
T COG5126 100 LFDKD 104 (160)
T ss_pred HhCCC
Confidence 66544
No 28
>PF09279 EF-hand_like: Phosphoinositide-specific phospholipase C, efhand-like; InterPro: IPR015359 This domain is predominantly found in the enzyme phosphoinositol-specific phospholipase C. It adopts a structure consisting of a core of four alpha helices, in an EF like fold, and is required for functioning of the enzyme []. ; PDB: 3OHM_B 3QR0_A 2ZKM_X 2FJU_B 3QR1_D 1DJW_B 1DJI_B 1DJG_B 1QAS_B 2ISD_B ....
Probab=77.08 E-value=6 Score=28.37 Aligned_cols=62 Identities=18% Similarity=0.284 Sum_probs=41.2
Q ss_pred HHHHHHHhhcCC-CCCCHHHHHHHHHHcCCC----CCCHHHHHHHHhh--CCcccccccHHHHHHHhhh
Q 027538 33 EIENFFDKYANG-GIIDPDGIVTLCKDLELE----YTDVRILMLAWKL--KAVKLGYFTQDEWETGLKT 94 (222)
Q Consensus 33 ~l~~lFd~Y~d~-~~I~~dGi~~~~~dLgv~----~ed~~~LvLa~~l--~a~~~g~~tr~eF~~g~~~ 94 (222)
+|..+|.+|++. ..|+.+++.+|+.+-.=+ ++.+.-++--+.- .....+.+|.++|+.-|..
T Consensus 1 ei~~if~~ys~~~~~mt~~~f~~FL~~eQ~~~~~~~~~~~~li~~~~~~~~~~~~~~lt~~gF~~fL~S 69 (83)
T PF09279_consen 1 EIEEIFRKYSSDKEYMTAEEFRRFLREEQGEPRLTDEQAKELIEKFEPDERNRQKGQLTLEGFTRFLFS 69 (83)
T ss_dssp HHHHHHHHHCTTSSSEEHHHHHHHHHHTSS-TTSSHHHHHHHHHHHHHHHHHHCTTEEEHHHHHHHHHS
T ss_pred CHHHHHHHHhCCCCcCCHHHHHHHHHHHhccccCcHHHHHHHHHHHccchhhcccCCcCHHHHHHHHCC
Confidence 578999999885 789999999999654433 3334444333221 1224588899998887743
No 29
>cd05026 S-100Z S-100Z: S-100Z domain found in proteins similar to S100Z. S100Z is a member of the S100 domain family within the EF-hand Ca2+-binding proteins superfamily. Note that the S-100 hierarchy, to which this S-100Z group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately.S100 proteins exhibit unique patterns of tissue- and cell type-specific expression and have been implicated in the Ca2+-dependent regulation of diverse physiological processes, including cell cycle regulation, differentiation, growth, and metabolic control. S100Z is normally expressed in various tissues, with its highest level of expression being in spleen and leukocytes. The function of S100Z remains unclear. Preliminary structural data suggests that S100Z is homodimer, however a heterodimer with S100P has been reported. S100Z is capable of binding calcium ions. When calcium binds to S110Z, the protein experiences a conformational change, which exposes hydrophobic surfac
Probab=75.98 E-value=16 Score=27.07 Aligned_cols=64 Identities=13% Similarity=0.134 Sum_probs=47.1
Q ss_pred HHHHHHHhhcCC---C-CCCHHHHHHHHHH-c----CCCCCCHHHHHHHHhhCCcccccccHHHHHHHhhhcC
Q 027538 33 EIENFFDKYANG---G-IIDPDGIVTLCKD-L----ELEYTDVRILMLAWKLKAVKLGYFTQDEWETGLKTLQ 96 (222)
Q Consensus 33 ~l~~lFd~Y~d~---~-~I~~dGi~~~~~d-L----gv~~ed~~~LvLa~~l~a~~~g~~tr~eF~~g~~~l~ 96 (222)
.|...|.+|.+. + .|+.+-+..++.. + +-.+.+-.+=-+.-.+....-|.|+-+||+.-+..+-
T Consensus 11 ~~~~~F~~~dd~dgdg~~Is~~EL~~ll~~~~~~~~~~~~~~~~v~~i~~elD~n~dG~Idf~EF~~l~~~l~ 83 (93)
T cd05026 11 TLIRIFHNYSGKEGDRYKLSKGELKELLQRELTDFLSSQKDPMLVDKIMNDLDSNKDNEVDFNEFVVLVAALT 83 (93)
T ss_pred HHHHHHHHHHccCCCCCEECHHHHHHHHHHHhHHhcccccCHHHHHHHHHHhCCCCCCCCCHHHHHHHHHHHH
Confidence 455669999954 3 4999999999976 3 3333444555666777777789999999999887763
No 30
>PF05517 p25-alpha: p25-alpha ; InterPro: IPR008907 This family encodes a 25 kDa protein that is phosphorylated by a Ser/Thr-Pro kinase []. It has been described as a brain specific protein, but it is found in Tetrahymena thermophila.; PDB: 1WLM_A 1PUL_A 2JRF_A.
Probab=75.70 E-value=7.5 Score=31.85 Aligned_cols=96 Identities=19% Similarity=0.283 Sum_probs=59.1
Q ss_pred HHHHHHhhc----CC-CCCCHHHHHHHHHHcCCCC---CCHHHHHHHHhhCCcccccccHHHHHHHhhhc----CCC--C
Q 027538 34 IENFFDKYA----NG-GIIDPDGIVTLCKDLELEY---TDVRILMLAWKLKAVKLGYFTQDEWETGLKTL----QVN--N 99 (222)
Q Consensus 34 l~~lFd~Y~----d~-~~I~~dGi~~~~~dLgv~~---ed~~~LvLa~~l~a~~~g~~tr~eF~~g~~~l----~~d--s 99 (222)
|+++|..|+ .. ..|+.....++|.|.||=- ....+=++-.++.+..-..|+-++|+..+..+ +++ +
T Consensus 1 L~~~F~~f~~fG~~~~~~m~~~~F~Kl~kD~~i~d~k~t~tdvDiiF~Kvk~k~~~~I~f~~F~~aL~~lA~~~~~~~~~ 80 (154)
T PF05517_consen 1 LEAVFKAFASFGKKNGTEMDSKNFAKLCKDCGIIDKKLTSTDVDIIFSKVKAKGARKITFEQFLEALAELAEKKGKDKSS 80 (154)
T ss_dssp HHHHHHHHHCSSTSTSSEEEHHHHHHHHHHTSS--SSS-HHHHHHHHHHHT-SS-SEEEHHHHHHHHHHHHHHHSCCCTH
T ss_pred CHHHHHHHHHhcCCccccccHHHHHHHHHHcCCCCCCCchHHHHHHHHHhhcCCCcccCHHHHHHHHHHHHHHhhccccc
Confidence 678999994 33 7899999999999999953 34445556666777777779999999998765 333 6
Q ss_pred HHHHHHHHHH-------------HHHHhCCCchhHHHHHhHhh
Q 027538 100 LSKLKKAISE-------------LEKEVRTPPNFADFYSFAFR 129 (222)
Q Consensus 100 l~~lk~~l~~-------------l~~~l~~~~~Fk~~Y~f~F~ 129 (222)
.+++...|-. -.+.+.|+..|.=+|.--|+
T Consensus 81 ~~~~~~kl~~~~~P~~~g~~~~~~v~rltD~s~YTG~hk~rf~ 123 (154)
T PF05517_consen 81 AEELKEKLTAGGGPSASGATKAGAVDRLTDKSTYTGSHKERFD 123 (154)
T ss_dssp HHHHHHHHHTT--SSSSS-TTS------SSSS-STTS---SS-
T ss_pred HHHHHHHHHccCccccccccccccccccCCCCccchhhhhcCC
Confidence 6666666611 11223455556666665555
No 31
>TIGR01446 DnaD_dom DnaD and phage-associated domain. This model represents the conserved domain of DnaD, part of Bacillus subtilis replication restart primosome, and of a number of phage-associated proteins. Members, both chromosomal or phage-associated, are found in the Bacillus/Clostridium group of Gram-positive bacteria.
Probab=71.35 E-value=8.3 Score=27.01 Aligned_cols=56 Identities=5% Similarity=0.036 Sum_probs=38.0
Q ss_pred CCCHHHHHHHHHHcCCCCCCHHHHHHHHhh--CCcccccccHHHHHHHhhhcCCCCHHHHH
Q 027538 46 IIDPDGIVTLCKDLELEYTDVRILMLAWKL--KAVKLGYFTQDEWETGLKTLQVNNLSKLK 104 (222)
Q Consensus 46 ~I~~dGi~~~~~dLgv~~ed~~~LvLa~~l--~a~~~g~~tr~eF~~g~~~l~~dsl~~lk 104 (222)
....+-|..++++.|.+++ ++...+-+-+ +..+++.+. .-+..|++-|+.|+++.+
T Consensus 15 ~~e~~~i~~~~~~~~~~~e-vI~~ai~~a~~~~~~~~~Yi~--~Il~~W~~~gi~T~e~~~ 72 (73)
T TIGR01446 15 PFEMEDLKYWLDEFGNSPE-LIKEALKEAVSNNKANYKYID--AILNNWKNNGIKTVEDVE 72 (73)
T ss_pred HHHHHHHHHHHHHhCCCHH-HHHHHHHHHHHcCCCCHHHHH--HHHHHHHHcCCCCHHHHh
Confidence 3456778889999998744 5555554444 344444433 567779999999999875
No 32
>PF00036 EF-hand_1: EF hand; InterPro: IPR018248 Many calcium-binding proteins belong to the same evolutionary family and share a type of calcium-binding domain known as the EF-hand. This type of domain consists of a twelve residue loop flanked on both sides by a twelve residue alpha-helical domain. In an EF-hand loop the calcium ion is coordinated in a pentagonal bipyramidal configuration. The six residues involved in the binding are in positions 1, 3, 5, 7, 9 and 12; these residues are denoted by X, Y, Z, -Y, -X and -Z. The invariant Glu or Asp at position 12 provides two oxygens for liganding Ca (bidentate ligand).; PDB: 1BJF_A 1XFW_R 1XFV_O 2K0J_A 2F3Z_A 3BYA_A 1XFU_Q 2R28_B 1ZOT_B 3G43_D ....
Probab=70.20 E-value=3.2 Score=24.59 Aligned_cols=19 Identities=21% Similarity=0.214 Sum_probs=14.5
Q ss_pred CcccccccHHHHHHHhhhc
Q 027538 77 AVKLGYFTQDEWETGLKTL 95 (222)
Q Consensus 77 a~~~g~~tr~eF~~g~~~l 95 (222)
...-|.|+.+||+..|++|
T Consensus 11 ~d~dG~I~~~Ef~~~~~~L 29 (29)
T PF00036_consen 11 KDGDGKIDFEEFKEMMKKL 29 (29)
T ss_dssp TTSSSEEEHHHHHHHHHHT
T ss_pred CCCCCcCCHHHHHHHHHhC
Confidence 3445889999999888764
No 33
>PF14658 EF-hand_9: EF-hand domain
Probab=65.10 E-value=17 Score=26.04 Aligned_cols=50 Identities=12% Similarity=0.131 Sum_probs=45.6
Q ss_pred CCCCHHHHHHHHHHcCC-CCCCHHHHHHHHhhCCccc-ccccHHHHHHHhhh
Q 027538 45 GIIDPDGIVTLCKDLEL-EYTDVRILMLAWKLKAVKL-GYFTQDEWETGLKT 94 (222)
Q Consensus 45 ~~I~~dGi~~~~~dLgv-~~ed~~~LvLa~~l~a~~~-g~~tr~eF~~g~~~ 94 (222)
+.|-+.-|..|+..+|- +|++-.+=-|+-.+--... |.+.++.|+.-|+.
T Consensus 13 G~V~v~~l~~~Lra~~~~~p~e~~Lq~l~~elDP~g~~~~v~~d~F~~iM~~ 64 (66)
T PF14658_consen 13 GRVPVSDLITYLRAVTGRSPEESELQDLINELDPEGRDGSVNFDTFLAIMRD 64 (66)
T ss_pred ceEeHHHHHHHHHHHcCCCCcHHHHHHHHHHhCCCCCCceEeHHHHHHHHHH
Confidence 67888999999999999 9999999999999988877 99999999998875
No 34
>PLN02964 phosphatidylserine decarboxylase
Probab=60.78 E-value=55 Score=33.15 Aligned_cols=78 Identities=8% Similarity=0.036 Sum_probs=54.0
Q ss_pred HHHHHHHHhhcCC--CCCCHHHHHHHHHHcC-CCCCCHH---HHHHHHhhCCcccccccHHHHHHHhhhcCC-CCHHHHH
Q 027538 32 KEIENFFDKYANG--GIIDPDGIVTLCKDLE-LEYTDVR---ILMLAWKLKAVKLGYFTQDEWETGLKTLQV-NNLSKLK 104 (222)
Q Consensus 32 ~~l~~lFd~Y~d~--~~I~~dGi~~~~~dLg-v~~ed~~---~LvLa~~l~a~~~g~~tr~eF~~g~~~l~~-dsl~~lk 104 (222)
.++.+.|+.+-.+ +.| +...+..|| .+|++.. +--+.-.+....-|.|+.+||+..|..++. .+-+.++
T Consensus 143 ~elkeaF~lfD~dgdG~i----Lg~ilrslG~~~pte~e~~fi~~mf~~~D~DgdG~IdfdEFl~lL~~lg~~~seEEL~ 218 (644)
T PLN02964 143 ESACESFDLLDPSSSNKV----VGSIFVSCSIEDPVETERSFARRILAIVDYDEDGQLSFSEFSDLIKAFGNLVAANKKE 218 (644)
T ss_pred HHHHHHHHHHCCCCCCcC----HHHHHHHhCCCCCCHHHHHHHHHHHHHhCCCCCCeEcHHHHHHHHHHhccCCCHHHHH
Confidence 4555667766433 344 677888999 5887775 333334456666799999999999998874 5666777
Q ss_pred HHHHHHHHH
Q 027538 105 KAISELEKE 113 (222)
Q Consensus 105 ~~l~~l~~~ 113 (222)
..+..++.+
T Consensus 219 eaFk~fDkD 227 (644)
T PLN02964 219 ELFKAADLN 227 (644)
T ss_pred HHHHHhCCC
Confidence 777766543
No 35
>KOG0028 consensus Ca2+-binding protein (centrin/caltractin), EF-Hand superfamily protein [Cytoskeleton; Cell cycle control, cell division, chromosome partitioning]
Probab=55.80 E-value=60 Score=27.46 Aligned_cols=65 Identities=18% Similarity=0.273 Sum_probs=45.2
Q ss_pred CHHHHHHHHHhhcCC--CCCCHHHHHHHHHHcCCCCCCHHHHHHHHhhCCcccccccHHHHHHHhhh
Q 027538 30 KAKEIENFFDKYANG--GIIDPDGIVTLCKDLELEYTDVRILMLAWKLKAVKLGYFTQDEWETGLKT 94 (222)
Q Consensus 30 ~~~~l~~lFd~Y~d~--~~I~~dGi~~~~~dLgv~~ed~~~LvLa~~l~a~~~g~~tr~eF~~g~~~ 94 (222)
+..+|...|.-+.++ +.|++.-+-+.+..||=++.|-.+--...-.+--.-|+|+.+||+.-|+.
T Consensus 104 t~eEi~~afrl~D~D~~Gkis~~~lkrvakeLgenltD~El~eMIeEAd~d~dgevneeEF~~imk~ 170 (172)
T KOG0028|consen 104 TKEEIKKAFRLFDDDKTGKISQRNLKRVAKELGENLTDEELMEMIEEADRDGDGEVNEEEFIRIMKK 170 (172)
T ss_pred cHHHHHHHHHcccccCCCCcCHHHHHHHHHHhCccccHHHHHHHHHHhcccccccccHHHHHHHHhc
Confidence 444555666555544 67888888888888888887777665555555555688888888877754
No 36
>PF13405 EF-hand_6: EF-hand domain; PDB: 2AMI_A 3QRX_A 1W7J_B 1OE9_B 1W7I_B 1KFU_S 1KFX_S 2BL0_B 1Y1X_B 3MSE_B ....
Probab=55.74 E-value=14 Score=21.55 Aligned_cols=27 Identities=19% Similarity=0.459 Sum_probs=13.0
Q ss_pred HHHHHHhhcCC--CCCCHHHHHHHHH-HcC
Q 027538 34 IENFFDKYANG--GIIDPDGIVTLCK-DLE 60 (222)
Q Consensus 34 l~~lFd~Y~d~--~~I~~dGi~~~~~-dLg 60 (222)
|.++|+.|-.+ +.|+.+-+...+. .||
T Consensus 2 l~~~F~~~D~d~dG~I~~~el~~~l~~~lG 31 (31)
T PF13405_consen 2 LREAFKMFDKDGDGFIDFEELRAILRKSLG 31 (31)
T ss_dssp HHHHHHHH-TTSSSEEEHHHHHHHHHHHTT
T ss_pred HHHHHHHHCCCCCCcCcHHHHHHHHHHhcC
Confidence 44555555322 4555555555555 344
No 37
>cd00052 EH Eps15 homology domain; found in proteins implicated in endocytosis, vesicle transport, and signal transduction. The alignment contains a pair of EF-hand motifs, typically one of them is canonical and binds to Ca2+, while the other may not bind to Ca2+. A hydrophobic binding pocket is formed by residues from both EF-hand motifs. The EH domain binds to proteins containing NPF (class I), [WF]W or SWG (class II), or H[TS]F (class III) sequence motifs.
Probab=52.39 E-value=35 Score=22.46 Aligned_cols=31 Identities=19% Similarity=0.029 Sum_probs=21.9
Q ss_pred CCcccccccHHHHHHHhhhcCCCCHHHHHHHH
Q 027538 76 KAVKLGYFTQDEWETGLKTLQVNNLSKLKKAI 107 (222)
Q Consensus 76 ~a~~~g~~tr~eF~~g~~~l~~dsl~~lk~~l 107 (222)
....-|.|+.+|+...+..+|. +-+.++..+
T Consensus 9 D~~~~G~i~~~el~~~l~~~g~-~~~~~~~i~ 39 (67)
T cd00052 9 DPDGDGLISGDEARPFLGKSGL-PRSVLAQIW 39 (67)
T ss_pred CCCCCCcCcHHHHHHHHHHcCC-CHHHHHHHH
Confidence 3445699999999999988886 444444443
No 38
>PF12763 EF-hand_4: Cytoskeletal-regulatory complex EF hand; PDB: 2QPT_A 2KSP_A 2KFG_A 2JQ6_A 2KFH_A 2KFF_A 1IQ3_A 3FIA_A 2KHN_A 2KGR_A ....
Probab=52.18 E-value=30 Score=26.64 Aligned_cols=63 Identities=14% Similarity=0.252 Sum_probs=46.9
Q ss_pred CHHHHHHHHHhhcCC-CCCCHHHHHHHHHHcCCCCCCHHHHHHHHhh-CCcccccccHHHHHHHhhhc
Q 027538 30 KAKEIENFFDKYANG-GIIDPDGIVTLCKDLELEYTDVRILMLAWKL-KAVKLGYFTQDEWETGLKTL 95 (222)
Q Consensus 30 ~~~~l~~lFd~Y~d~-~~I~~dGi~~~~~dLgv~~ed~~~LvLa~~l-~a~~~g~~tr~eF~~g~~~l 95 (222)
...+..++|+..... +.|+.+....++..-|++.+.+. =.|-| -...-|..+++||+-+|+-+
T Consensus 8 e~~~y~~~F~~l~~~~g~isg~~a~~~f~~S~L~~~~L~---~IW~LaD~~~dG~L~~~EF~iAm~Li 72 (104)
T PF12763_consen 8 EKQKYDQIFQSLDPQDGKISGDQAREFFMKSGLPRDVLA---QIWNLADIDNDGKLDFEEFAIAMHLI 72 (104)
T ss_dssp HHHHHHHHHHCTSSSTTEEEHHHHHHHHHHTTSSHHHHH---HHHHHH-SSSSSEEEHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCCCCCeEeHHHHHHHHHHcCCCHHHHH---HHHhhhcCCCCCcCCHHHHHHHHHHH
Confidence 345667899887644 78999999999999998875433 33444 44566999999999999764
No 39
>cd00252 SPARC_EC SPARC_EC; extracellular Ca2+ binding domain (containing 2 EF-hand motifs) of SPARC and related proteins (QR1, SC1/hevin, testican and tsc-36/FRP). SPARC (BM-40) is a multifunctional glycoprotein, a matricellular protein, that functions to regulate cell-matrix interactions; binds to such proteins as collagen and vitronectin and binds to endothelial cells thus inhibiting cellular proliferation. The EC domain interacts with a follistatin-like (FS) domain which appears to stabilize Ca2+ binding. The two EF-hands interact canonically but their conserved disulfide bonds confer a tight association between the EF-hand pair and an acid/amphiphilic N-terminal helix. Proposed active form involves a Ca2+ dependent symmetric homodimerization of EC-FS modules.
Probab=48.86 E-value=98 Score=24.19 Aligned_cols=59 Identities=15% Similarity=0.189 Sum_probs=44.5
Q ss_pred CHHHHHHHHHhhcCC--CCCCHHHHHHHHHHcCCCCCCHHHHHHHHhhCCcccccccHHHHHHHh
Q 027538 30 KAKEIENFFDKYANG--GIIDPDGIVTLCKDLELEYTDVRILMLAWKLKAVKLGYFTQDEWETGL 92 (222)
Q Consensus 30 ~~~~l~~lFd~Y~d~--~~I~~dGi~~~~~dLgv~~ed~~~LvLa~~l~a~~~g~~tr~eF~~g~ 92 (222)
...+|.-.|.++=.+ +.|+.+-+..++ +.+....+--+...+.+..=|.||.+||..++
T Consensus 46 ~~~~l~w~F~~lD~d~DG~Ls~~EL~~~~----l~~~e~~~~~f~~~~D~n~Dg~IS~~Ef~~cl 106 (116)
T cd00252 46 CKDPVGWMFNQLDGNYDGKLSHHELAPIR----LDPNEHCIKPFFESCDLDKDGSISLDEWCYCF 106 (116)
T ss_pred HHHHHHHHHHHHCCCCCCcCCHHHHHHHH----ccchHHHHHHHHHHHCCCCCCCCCHHHHHHHH
Confidence 456788899999433 789999998877 44544444556666777788999999999988
No 40
>KOG2643 consensus Ca2+ binding protein, contains EF-hand motifs [Inorganic ion transport and metabolism]
Probab=48.79 E-value=37 Score=33.00 Aligned_cols=82 Identities=15% Similarity=0.222 Sum_probs=61.2
Q ss_pred CCCCHHHHHHHHHHcCCCCCCHHHHHHHHhhCCcccccccHHHHHHHhhhcCCCCHHHHHHHHHHHHHHhCC------Cc
Q 027538 45 GIIDPDGIVTLCKDLELEYTDVRILMLAWKLKAVKLGYFTQDEWETGLKTLQVNNLSKLKKAISELEKEVRT------PP 118 (222)
Q Consensus 45 ~~I~~dGi~~~~~dLgv~~ed~~~LvLa~~l~a~~~g~~tr~eF~~g~~~l~~dsl~~lk~~l~~l~~~l~~------~~ 118 (222)
....+|-..+|.++|..+.-.++..-.+. ..-|.||..+|-.-+-.+-..+.++...++.++.++..+ -+
T Consensus 301 ~kLs~deF~~F~e~Lq~Eil~lEF~~~~~----~~~g~Ise~DFA~~lL~~a~~n~~~k~~~lkrvk~kf~~~~~gISl~ 376 (489)
T KOG2643|consen 301 GKLSIDEFLKFQENLQEEILELEFERFDK----GDSGAISEVDFAELLLAYAGVNSKKKHKYLKRVKEKFKDDGKGISLQ 376 (489)
T ss_pred ccccHHHHHHHHHHHHHHHHHHHHHHhCc----ccccccCHHHHHHHHHHHcccchHhHHHHHHHHHHhccCCCCCcCHH
Confidence 57889999999999985544444333322 223899999999999888777778888888888888854 25
Q ss_pred hhHHHHHhHhhh
Q 027538 119 NFADFYSFAFRY 130 (222)
Q Consensus 119 ~Fk~~Y~f~F~f 130 (222)
.|+.|+.|..+.
T Consensus 377 Ef~~Ff~Fl~~l 388 (489)
T KOG2643|consen 377 EFKAFFRFLNNL 388 (489)
T ss_pred HHHHHHHHHhhh
Confidence 789998887654
No 41
>smart00027 EH Eps15 homology domain. Pair of EF hand motifs that recognise proteins containing Asn-Pro-Phe (NPF) sequences.
Probab=48.02 E-value=34 Score=25.10 Aligned_cols=69 Identities=10% Similarity=-0.047 Sum_probs=38.1
Q ss_pred CCCCCHHHHHHHHhh-CCcccccccHHHHHHHhhhcCCCCHHHHHHHHHHHHHHhCCCchhHHHHHhHhhh
Q 027538 61 LEYTDVRILMLAWKL-KAVKLGYFTQDEWETGLKTLQVNNLSKLKKAISELEKEVRTPPNFADFYSFAFRY 130 (222)
Q Consensus 61 v~~ed~~~LvLa~~l-~a~~~g~~tr~eF~~g~~~l~~dsl~~lk~~l~~l~~~l~~~~~Fk~~Y~f~F~f 130 (222)
++++++..+--+... -...-|.|+.+++...|+.+|++ -+.++..+...+..-.+.-.|.+|+...-.-
T Consensus 4 ls~~~~~~l~~~F~~~D~d~~G~Is~~el~~~l~~~~~~-~~ev~~i~~~~d~~~~g~I~~~eF~~~~~~~ 73 (96)
T smart00027 4 ISPEDKAKYEQIFRSLDKNQDGTVTGAQAKPILLKSGLP-QTLLAKIWNLADIDNDGELDKDEFALAMHLI 73 (96)
T ss_pred CCHHHHHHHHHHHHHhCCCCCCeEeHHHHHHHHHHcCCC-HHHHHHHHHHhcCCCCCCcCHHHHHHHHHHH
Confidence 344455555545443 33456999999999999998863 3444444443322222223355555444333
No 42
>KOG0036 consensus Predicted mitochondrial carrier protein [Nucleotide transport and metabolism]
Probab=46.99 E-value=1.3e+02 Score=29.12 Aligned_cols=86 Identities=15% Similarity=0.144 Sum_probs=68.0
Q ss_pred HHHHHHHHHhhcCC--CCCCHHHHHHHHHHcCCC-CCCHHHHHHHHhhCCcccccccHHHHHHHhhhc------------
Q 027538 31 AKEIENFFDKYANG--GIIDPDGIVTLCKDLELE-YTDVRILMLAWKLKAVKLGYFTQDEWETGLKTL------------ 95 (222)
Q Consensus 31 ~~~l~~lFd~Y~d~--~~I~~dGi~~~~~dLgv~-~ed~~~LvLa~~l~a~~~g~~tr~eF~~g~~~l------------ 95 (222)
+.++..+|+.+-.. +.++++.+.+-++.|+.. |..-..=.|.-.+.+.+-|...-+||.+-+.+-
T Consensus 13 ~~r~~~lf~~lD~~~~g~~d~~~l~k~~~~l~~~~~~~~~~~~l~~~~d~~~dg~vDy~eF~~Y~~~~E~~l~~~F~~iD 92 (463)
T KOG0036|consen 13 DIRIRCLFKELDSKNDGQVDLDQLEKGLEKLDHPKPNYEAAKMLFSAMDANRDGRVDYSEFKRYLDNKELELYRIFQSID 92 (463)
T ss_pred HHHHHHHHHHhccCCCCceeHHHHHHHHHhcCCCCCchHHHHHHHHhcccCcCCcccHHHHHHHHHHhHHHHHHHHhhhc
Confidence 45677899999765 789999999999999999 888888888999999999999999999887542
Q ss_pred ----CCCCHHHHHHHHHHHHHHhCC
Q 027538 96 ----QVNNLSKLKKAISELEKEVRT 116 (222)
Q Consensus 96 ----~~dsl~~lk~~l~~l~~~l~~ 116 (222)
|+-.+..|..+|.++-.+|.+
T Consensus 93 ~~hdG~i~~~Ei~~~l~~~gi~l~d 117 (463)
T KOG0036|consen 93 LEHDGKIDPNEIWRYLKDLGIQLSD 117 (463)
T ss_pred cccCCccCHHHHHHHHHHhCCccCH
Confidence 233466666666666555543
No 43
>PLN02223 phosphoinositide phospholipase C
Probab=46.86 E-value=45 Score=33.08 Aligned_cols=65 Identities=17% Similarity=0.098 Sum_probs=41.6
Q ss_pred CHHHHHHHHHhhcCC-CCCCHHHHHHHHHHc-------CCCCCCHHHHHHHHhh------CCcccccccHHHHHHHhhh
Q 027538 30 KAKEIENFFDKYANG-GIIDPDGIVTLCKDL-------ELEYTDVRILMLAWKL------KAVKLGYFTQDEWETGLKT 94 (222)
Q Consensus 30 ~~~~l~~lFd~Y~d~-~~I~~dGi~~~~~dL-------gv~~ed~~~LvLa~~l------~a~~~g~~tr~eF~~g~~~ 94 (222)
.+..+..+|++|.+. +.++.+++.+|+.=| +...++...++-...- ++...+.++.++|..-+..
T Consensus 14 ~p~~v~~~f~~~~~~~~~m~~~~l~~fl~~l~~~q~e~~~~~~~a~~i~~~~~~~~~~~~~~~~~~~l~~~~f~~~L~s 92 (537)
T PLN02223 14 QPDLILNFFGNEFHGYDDDMPELLPRFIELLDTEKDEDGAGLNAAEKIAAELKRRKCDILAFRNLRCLELDHLNEFLFS 92 (537)
T ss_pred CcHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHhcccccCCHHHHHHHHHHHHhhcccchhhhhccccCHHHHHHHhcC
Confidence 567889999999766 899999999999433 4445555554443211 1112244666777666533
No 44
>PF07531 TAFH: NHR1 homology to TAF; InterPro: IPR003894 The TAF homology (TAFH) or Nervy homology region 1 (NHR1) domain is a domain of 95-100 amino acids present in eukaryotic proteins of the MTG/ETO family and whereof the core ~75-80 residues occur in TAF proteins. The transcription initiation TFIID complex is composed of TATA binding protein (TBP) and a number of TBP-associated factors (TAFs). The TAFH/NHR1 domain is named after fruit fly TATA-box-associated factor 110 (TAF110), human TAF105 and TAF130, and the fruit fly protein Nervy, which is a homologue of human MTG8/ETO [, ]. The human eight twenty-one (ETO or MTG8) and related myeloid transforming gene products MTGR1 and MTG16 as well as the Nervy protein contain the NHR1-4 domains. The NHR1/TAFH domain occurs in the N-terminal part of these proteins, while a MYND-type zinc finger forms the NHR4 domain []. The TAFH/NHR1 domain can be involved in protein-protein interactions, e.g in MTG8/ETO with HSP90 and Gfi-1 []. ; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent; PDB: 2P6V_A 2KNH_A 2PP4_A 2H7B_A.
Probab=46.56 E-value=42 Score=25.81 Aligned_cols=64 Identities=23% Similarity=0.338 Sum_probs=44.8
Q ss_pred HHHHHHHHcCCCC---CCHHHHHHHHhhCCcccccccHHHHHHHhhh-cCC----CCHHHHHHHHHHHHHHhCCCchh
Q 027538 51 GIVTLCKDLELEY---TDVRILMLAWKLKAVKLGYFTQDEWETGLKT-LQV----NNLSKLKKAISELEKEVRTPPNF 120 (222)
Q Consensus 51 Gi~~~~~dLgv~~---ed~~~LvLa~~l~a~~~g~~tr~eF~~g~~~-l~~----dsl~~lk~~l~~l~~~l~~~~~F 120 (222)
-+++|+.+ .++| +.+..||.+-.- |.|+-|||...++. ++. .=+.=||+.||.|++++.+.+.|
T Consensus 12 tLi~las~-~~spev~~~Vr~LV~~L~~-----~~i~~EeF~~~Lq~~lns~pqP~lvPFLK~~lp~Lr~~l~~~~~~ 83 (96)
T PF07531_consen 12 TLIQLASD-KQSPEVGENVRELVQNLVD-----GKIEAEEFTSKLQEELNSSPQPYLVPFLKKSLPALRQELPNCARF 83 (96)
T ss_dssp HHHHHHCC-SC-CCHHHHHHHHHHHHHT-----TSS-HHHHHHHHHHHCTSS--TTHHHHHHHHHHHHHHCHCHHHHH
T ss_pred HHHHHhcC-CCChHHHHHHHHHHHHHHc-----CCCCHHHHHHHHHHHhcCCCCcchHHHHHHhHHHHHHHHHHHHHH
Confidence 46677777 4555 346666665443 67999999999977 443 33788999999999999765544
No 45
>PF05042 Caleosin: Caleosin related protein; InterPro: IPR007736 This family contains plant proteins related to caleosin. Caleosins contain calcium-binding domains and have an oleosin-like association with lipid bodies. Caleosins are present at relatively low levels and are mainly bound to microsomal membrane fractions at the early stages of seed development. As the seeds mature, overall levels of caleosins increased dramatically and they were associated almost exclusively with storage lipid bodies []. The calcium binding domain is probably related to the calcium-binding EF-hands motif IPR002048 from INTERPRO.
Probab=44.62 E-value=1.3e+02 Score=25.57 Aligned_cols=61 Identities=16% Similarity=0.241 Sum_probs=43.3
Q ss_pred CccCHHHHHHHHHhhcCC--CCCCHHHHHHHHHH--cCCCC----CCHHHHHHHHhhCCcccccccHHH
Q 027538 27 GKAKAKEIENFFDKYANG--GIIDPDGIVTLCKD--LELEY----TDVRILMLAWKLKAVKLGYFTQDE 87 (222)
Q Consensus 27 ~~~~~~~l~~lFd~Y~d~--~~I~~dGi~~~~~d--Lgv~~----ed~~~LvLa~~l~a~~~g~~tr~e 87 (222)
.+=.+.+.|++|.+|+.. +.+...-+.++... .=.|| ....-..++|.|-.+.-|..+||.
T Consensus 91 GrFvp~kFe~iF~kya~~~~d~LT~~E~~~m~~~nr~~~D~~GW~a~~~EW~~~y~L~~d~dG~l~Ke~ 159 (174)
T PF05042_consen 91 GRFVPQKFEEIFSKYAKTGPDALTLRELWRMLKGNRNANDPFGWFAAFFEWGALYILAKDKDGFLSKED 159 (174)
T ss_pred CcCCHHHHHHHHHHhCCCCCCCcCHHHHHHHHHhccccCCcchhhhhhhHHHHHHHHHcCcCCcEeHHH
Confidence 444788999999999864 78888888888876 22222 223445667777777788887765
No 46
>PF01314 AFOR_C: Aldehyde ferredoxin oxidoreductase, domains 2 & 3; InterPro: IPR001203 Enzymes of the aldehyde ferredoxin oxidoreductase (AOR) family [] contain a tungsten cofactor and an 4Fe4S cluster and catalyse the interconversion of aldehydes to carboxylates []. This family includes AOR, formaldehyde ferredoxin oxidoreductase (FOR), glyceraldehyde-3-phosphate ferredoxin oxidoreductase (GAPOR), all isolated from hyperthermophilic archea []; carboxylic acid reductase found in clostridia []; and hydroxycarboxylate viologen oxidoreductase from Proteus vulgaris, the sole member of the AOR family containing molybdenum []. GAPOR may be involved in glycolysis [], but the functions of the other proteins are not yet clear. AOR has been proposed to be the primary enzyme responsible for oxidising the aldehydes that are produced by the 2-keto acid oxidoreductases []. This entry represents the C-terminal region of these enzymes, containing the alpha-helical structural domains 2 and 3 [, ].; GO: 0009055 electron carrier activity, 0016491 oxidoreductase activity, 0016625 oxidoreductase activity, acting on the aldehyde or oxo group of donors, iron-sulfur protein as acceptor, 0051536 iron-sulfur cluster binding, 0055114 oxidation-reduction process; PDB: 1B25_C 1B4N_C 1AOR_B.
Probab=44.41 E-value=12 Score=35.09 Aligned_cols=36 Identities=22% Similarity=0.470 Sum_probs=30.2
Q ss_pred HHHHHHHcCCCCCCHHHHHHHHhhCCcccccccHHHH
Q 027538 52 IVTLCKDLELEYTDVRILMLAWKLKAVKLGYFTQDEW 88 (222)
Q Consensus 52 i~~~~~dLgv~~ed~~~LvLa~~l~a~~~g~~tr~eF 88 (222)
+..+|.+||+|.-+.-. +|||.|.+-.-|.|++++.
T Consensus 116 ~~~lcd~~GlDtis~G~-~ia~~me~~e~G~i~~~d~ 151 (382)
T PF01314_consen 116 ANDLCDDYGLDTISAGN-TIAWAMELYEKGLITKEDT 151 (382)
T ss_dssp HHHHHHHHTB-HHHHHH-HHHHHHHHHHTTSSSCHHH
T ss_pred HHHHHHHhCCcHHHHHH-HHHHHHHHHHCCCCChhhc
Confidence 45789999999866664 8999999999999999888
No 47
>KOG0034 consensus Ca2+/calmodulin-dependent protein phosphatase (calcineurin subunit B), EF-Hand superfamily protein [Signal transduction mechanisms]
Probab=42.54 E-value=1.2e+02 Score=25.73 Aligned_cols=134 Identities=17% Similarity=0.224 Sum_probs=85.4
Q ss_pred CHHHHHHHHHhhcCC------CCCCHHHHHHHHHHcCCCCCCHHHHHHHHhhCCcccccccHHHHHHHhhhcCCCCHHHH
Q 027538 30 KAKEIENFFDKYANG------GIIDPDGIVTLCKDLELEYTDVRILMLAWKLKAVKLGYFTQDEWETGLKTLQVNNLSKL 103 (222)
Q Consensus 30 ~~~~l~~lFd~Y~d~------~~I~~dGi~~~~~dLgv~~ed~~~LvLa~~l~a~~~g~~tr~eF~~g~~~l~~dsl~~l 103 (222)
+..+|+.|+.+|+.- +.|..+-+..+. .+..+|=+..++-+....+.... ++.++|++++....+......
T Consensus 28 s~~EI~~L~~rF~kl~~~~~~g~lt~eef~~i~-~~~~Np~~~rI~~~f~~~~~~~~--v~F~~Fv~~ls~f~~~~~~~~ 104 (187)
T KOG0034|consen 28 SANEIERLYERFKKLDRNNGDGYLTKEEFLSIP-ELALNPLADRIIDRFDTDGNGDP--VDFEEFVRLLSVFSPKASKRE 104 (187)
T ss_pred CHHHHHHHHHHHHHhccccccCccCHHHHHHHH-HHhcCcHHHHHHHHHhccCCCCc--cCHHHHHHHHhhhcCCccHHH
Confidence 477999998888732 678888887777 88899988888888887777665 999999999998776555442
Q ss_pred HHHHHHHHHHhCCCchhHHHHHhHhhhcccccccccccHHHHHHHHhHhcCCCCh---hhHHHHHHHHHhc---CCcccc
Q 027538 104 KKAISELEKEVRTPPNFADFYSFAFRYHLTEEKQKNIDIETICELLNLVLGPQFR---RQVDLLIDYLKVQ---SNYKVI 177 (222)
Q Consensus 104 k~~l~~l~~~l~~~~~Fk~~Y~f~F~f~~~~~~qk~L~~e~Ai~~W~lll~~~~~---~~l~~W~~Fl~~~---~~~k~I 177 (222)
|- +|+|..=- -.+...|.-+.-...-..+++..-. ..+..=++++-.+ ..--.|
T Consensus 105 Kl-------------------~faF~vYD-~~~~G~I~reel~~iv~~~~~~~~~~~~e~~~~i~d~t~~e~D~d~DG~I 164 (187)
T KOG0034|consen 105 KL-------------------RFAFRVYD-LDGDGFISREELKQILRMMVGENDDMSDEQLEDIVDKTFEEADTDGDGKI 164 (187)
T ss_pred HH-------------------HHHHHHhc-CCCCCcCcHHHHHHHHHHHHccCCcchHHHHHHHHHHHHHHhCCCCCCcC
Confidence 22 23332221 1223446666666666666664321 2344444444221 122357
Q ss_pred ChhhhhHHH
Q 027538 178 NLDQWLGIF 186 (222)
Q Consensus 178 skD~W~~~l 186 (222)
|.+-|+-++
T Consensus 165 sfeEf~~~v 173 (187)
T KOG0034|consen 165 SFEEFCKVV 173 (187)
T ss_pred cHHHHHHHH
Confidence 777776544
No 48
>PLN02228 Phosphoinositide phospholipase C
Probab=42.06 E-value=88 Score=31.28 Aligned_cols=66 Identities=14% Similarity=0.245 Sum_probs=45.4
Q ss_pred cCHHHHHHHHHhhcCCCCCCHHHHHHHHHHcCCCC-CCH-HHHHHHHhhCCc----ccccccHHHHHHHhhh
Q 027538 29 AKAKEIENFFDKYANGGIIDPDGIVTLCKDLELEY-TDV-RILMLAWKLKAV----KLGYFTQDEWETGLKT 94 (222)
Q Consensus 29 ~~~~~l~~lFd~Y~d~~~I~~dGi~~~~~dLgv~~-ed~-~~LvLa~~l~a~----~~g~~tr~eF~~g~~~ 94 (222)
..+++|..+|.+|.+.+.|+.+++.+|+.+..=+. .+. .+.-|-..+... .-|.++.++|..-+..
T Consensus 21 ~~~~ei~~if~~~s~~~~~t~~~~~~FL~~~Q~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~gF~~yl~s 92 (567)
T PLN02228 21 EPPVSIKRLFEAYSRNGKMSFDELLRFVSEVQGERHAGLDYVQDIFHSVKHHNVFHHHGLVHLNAFYRYLFS 92 (567)
T ss_pred CCcHHHHHHHHHhcCCCccCHHHHHHHHHHhcCCccCCHHHHHHHHHHhccchhhcccCccCHHHHHHHhcC
Confidence 36789999999998777899999999998875432 221 123333344321 2367999999887743
No 49
>PLN02230 phosphoinositide phospholipase C 4
Probab=38.86 E-value=85 Score=31.57 Aligned_cols=66 Identities=15% Similarity=0.273 Sum_probs=44.3
Q ss_pred cCHHHHHHHHHhhcCC-CCCCHHHHHHHHHHcCCC-----CCCHHHHHHHHhhC-----CcccccccHHHHHHHhhh
Q 027538 29 AKAKEIENFFDKYANG-GIIDPDGIVTLCKDLELE-----YTDVRILMLAWKLK-----AVKLGYFTQDEWETGLKT 94 (222)
Q Consensus 29 ~~~~~l~~lFd~Y~d~-~~I~~dGi~~~~~dLgv~-----~ed~~~LvLa~~l~-----a~~~g~~tr~eF~~g~~~ 94 (222)
..+.++..+|.+|.+. +.++.+++.+|+.+-+=. +++..-++....-. ....+.++.++|..-+..
T Consensus 26 ~p~~ei~~lf~~~s~~~~~mt~~~l~~FL~~~Q~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~F~~yL~s 102 (598)
T PLN02230 26 GPVADVRDLFEKYADGDAHMSPEQLQKLMAEEGGGEGETSLEEAERIVDEVLRRKHHIAKFTRRNLTLDDFNYYLFS 102 (598)
T ss_pred CCcHHHHHHHHHHhCCCCccCHHHHHHHHHHhCCCcccCCHHHHHHHHHHHHhhccccccccccccCHHHHHHHHcC
Confidence 3678999999999766 799999999999887732 33333443322111 112345889998886643
No 50
>cd05022 S-100A13 S-100A13: S-100A13 domain found in proteins similar to S100A13. S100A13 is a calcium-binding protein belonging to a large S100 vertebrate-specific protein family within the EF-hand superfamily of calcium-binding proteins. Note that the S-100 hierarchy, to which this S-100A13 group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100A13 is involved in the cellular export of interleukin-1 (IL-1) and of fibroblast growth factor-1 (FGF-1), which plays an important role in angiogenesis and tissue regeneration. Export is based on the CuII-dependent formation of multiprotein complexes containing the S100A13 protein. Assembly of these complexes occurs near the inner surface of the plasma membrane. Binding of two Ca(II) ions per monomer triggers key conformational changes leading to the creation of two identical and symmetrical Cu(II)-binding sites on the surface of the protein, close to the interface between the two monomers. These Cu
Probab=38.30 E-value=74 Score=23.61 Aligned_cols=68 Identities=15% Similarity=0.283 Sum_probs=41.2
Q ss_pred HHHHHHHHhhCCc--ccccccHHHHHHHhhh-cC--CCCHHHHHHHHHHHHHHhCCCchhHHHHHhHhhhccc
Q 027538 66 VRILMLAWKLKAV--KLGYFTQDEWETGLKT-LQ--VNNLSKLKKAISELEKEVRTPPNFADFYSFAFRYHLT 133 (222)
Q Consensus 66 ~~~LvLa~~l~a~--~~g~~tr~eF~~g~~~-l~--~dsl~~lk~~l~~l~~~l~~~~~Fk~~Y~f~F~f~~~ 133 (222)
+..|+-+...=+. .-|.|+++|+..-|+. +| +...+.++..+..++..=...-.|.+|-......+..
T Consensus 7 i~~l~~~F~~fd~~~~~g~i~~~ELk~ll~~elg~~ls~~~~v~~mi~~~D~d~DG~I~F~EF~~l~~~l~~~ 79 (89)
T cd05022 7 IETLVSNFHKASVKGGKESLTASEFQELLTQQLPHLLKDVEGLEEKMKNLDVNQDSKLSFEEFWELIGELAKA 79 (89)
T ss_pred HHHHHHHHHHHhCCCCCCeECHHHHHHHHHHHhhhhccCHHHHHHHHHHhCCCCCCCCcHHHHHHHHHHHHHH
Confidence 4556666665454 5699999999999988 76 2222334444433333222344688877776666543
No 51
>PLN02222 phosphoinositide phospholipase C 2
Probab=38.11 E-value=76 Score=31.80 Aligned_cols=64 Identities=17% Similarity=0.270 Sum_probs=44.1
Q ss_pred CHHHHHHHHHhhcCCCCCCHHHHHHHHHHcCCCC----CCHHHHHHHHhhCCcccccccHHHHHHHhhh
Q 027538 30 KAKEIENFFDKYANGGIIDPDGIVTLCKDLELEY----TDVRILMLAWKLKAVKLGYFTQDEWETGLKT 94 (222)
Q Consensus 30 ~~~~l~~lFd~Y~d~~~I~~dGi~~~~~dLgv~~----ed~~~LvLa~~l~a~~~g~~tr~eF~~g~~~ 94 (222)
.+++|..+|.+|.+.+.|+.+++.+|+.+-.=++ ++..-|+=.+ -....-+.++.++|..-+..
T Consensus 23 ~~~ei~~if~~~~~~~~mt~~~l~~FL~~~Q~~~~~~~~~~~~ii~~~-~~~~~~~~~~~~gF~~yL~s 90 (581)
T PLN02222 23 APREIKTIFEKYSENGVMTVDHLHRFLIDVQKQDKATREDAQSIINSA-SSLLHRNGLHLDAFFKYLFG 90 (581)
T ss_pred CcHHHHHHHHHhcCCCCcCHHHHHHHHHHhcCCccCCHHHHHHHHHhh-hhhhhccCcCHHHHHHHhcC
Confidence 5679999999998768999999999998876543 2333222221 12223466888998887754
No 52
>PRK10391 oriC-binding nucleoid-associated protein; Provisional
Probab=37.94 E-value=66 Score=23.42 Aligned_cols=39 Identities=15% Similarity=0.336 Sum_probs=30.0
Q ss_pred cHHHHHHHhhhcCCCCHHHHHHHHHHHHHHhCCCchhHHHH
Q 027538 84 TQDEWETGLKTLQVNNLSKLKKAISELEKEVRTPPNFADFY 124 (222)
Q Consensus 84 tr~eF~~g~~~l~~dsl~~lk~~l~~l~~~l~~~~~Fk~~Y 124 (222)
|+.+|+-.+ -+|.|++.|-+.+..+...|.++..-..||
T Consensus 2 tk~eyLlkf--Rkcss~eTLEkv~e~~~y~L~~~~e~~~f~ 40 (71)
T PRK10391 2 TVQDYLLKF--RKISSLESLEKLFDHLNYTLTDDQEIINMY 40 (71)
T ss_pred cHHHHHHHH--HhcCcHHHHHHHHHHhhcccCCHHHHHHHH
Confidence 677777544 369999999999999999998765555555
No 53
>PF11116 DUF2624: Protein of unknown function (DUF2624); InterPro: IPR020277 This entry contains proteins with no known function.
Probab=36.08 E-value=1.8e+02 Score=21.84 Aligned_cols=52 Identities=17% Similarity=0.251 Sum_probs=45.6
Q ss_pred CCCCHHHHHHHHHHcCCCCCCHHHHHHHHhhCCcccccccHHHHHHHhhhcC
Q 027538 45 GIIDPDGIVTLCKDLELEYTDVRILMLAWKLKAVKLGYFTQDEWETGLKTLQ 96 (222)
Q Consensus 45 ~~I~~dGi~~~~~dLgv~~ed~~~LvLa~~l~a~~~g~~tr~eF~~g~~~l~ 96 (222)
+.|..+-+.+||..-||+.+....-.++..|+....-.|..++=..-++++.
T Consensus 13 n~iT~~eLlkyskqy~i~it~~QA~~I~~~lr~k~inIfn~~~r~~llkeia 64 (85)
T PF11116_consen 13 NNITAKELLKYSKQYNISITKKQAEQIANILRGKNINIFNEQERKKLLKEIA 64 (85)
T ss_pred hcCCHHHHHHHHHHhCCCCCHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHH
Confidence 5799999999999999999999999999999999998888887766666653
No 54
>KOG0030 consensus Myosin essential light chain, EF-Hand protein superfamily [Cytoskeleton]
Probab=35.74 E-value=1.4e+02 Score=24.86 Aligned_cols=63 Identities=14% Similarity=0.165 Sum_probs=45.5
Q ss_pred HHHHHHHHhhcCC--CCCCHHHHHHHHHHcCCCCCCHHHHHHHHhhCCc--ccccccHHHHHHHhhh
Q 027538 32 KEIENFFDKYANG--GIIDPDGIVTLCKDLELEYTDVRILMLAWKLKAV--KLGYFTQDEWETGLKT 94 (222)
Q Consensus 32 ~~l~~lFd~Y~d~--~~I~~dGi~~~~~dLgv~~ed~~~LvLa~~l~a~--~~g~~tr~eF~~g~~~ 94 (222)
.++.++|+-|-.. +.|+...+---+..||.+|.+..++-..-..... ++-.++-++|+--.+.
T Consensus 11 ~e~ke~F~lfD~~gD~ki~~~q~gdvlRalG~nPT~aeV~k~l~~~~~~~~~~~rl~FE~fLpm~q~ 77 (152)
T KOG0030|consen 11 EEFKEAFLLFDRTGDGKISGSQVGDVLRALGQNPTNAEVLKVLGQPKRREMNVKRLDFEEFLPMYQQ 77 (152)
T ss_pred HHHHHHHHHHhccCcccccHHHHHHHHHHhcCCCcHHHHHHHHcCcccchhhhhhhhHHHHHHHHHH
Confidence 4556655555332 7899999999999999999998888777776666 3456777777754444
No 55
>PF13443 HTH_26: Cro/C1-type HTH DNA-binding domain; PDB: 3TYR_A 3TYS_A 3B7H_A.
Probab=35.15 E-value=22 Score=23.76 Aligned_cols=35 Identities=9% Similarity=0.117 Sum_probs=19.6
Q ss_pred CHHHHHHHHHhhcCCCCCCHHHHHHHHHHcCCCCCCH
Q 027538 30 KAKEIENFFDKYANGGIIDPDGIVTLCKDLELEYTDV 66 (222)
Q Consensus 30 ~~~~l~~lFd~Y~d~~~I~~dGi~~~~~dLgv~~ed~ 66 (222)
+.+.|.+++..- ...++.+-+.++|+-||++|+++
T Consensus 23 s~~tl~~~~~~~--~~~~~~~~l~~ia~~l~~~~~el 57 (63)
T PF13443_consen 23 SRSTLSRILNGK--PSNPSLDTLEKIAKALNCSPEEL 57 (63)
T ss_dssp -HHHHHHHHTTT-------HHHHHHHHHHHT--HHHC
T ss_pred CHHHHHHHHhcc--cccccHHHHHHHHHHcCCCHHHH
Confidence 344555554422 15799999999999999998875
No 56
>cd03567 VHS_GGA VHS domain family, GGA subfamily; GGA (Golgi-localized, Gamma-ear-containing, Arf-binding) comprise a subfamily of ubiquitously expressed, monomeric, motif-binding cargo/clathrin adaptor proteins. The VHS domain has a superhelical structure similar to the structure of the ARM (Armadillo) repeats and is present at the N-termini of proteins. GGA proteins have a multidomain structure consisting of an N-terminal VHS domain linked by a short proline-rich linker to a GAT (GGA and TOM) domain, which is followed by a long flexible linker to the C-terminal appendage, GAE (gamma-adaptin ear) domain. The VHS domain of GGA proteins binds to the acidic-cluster dileucine (DxxLL) motif found on the cytoplasmic tails of cargo proteins trafficked between the trans-Golgi network and the endosomal system.
Probab=34.38 E-value=2.5e+02 Score=22.64 Aligned_cols=91 Identities=19% Similarity=0.234 Sum_probs=49.4
Q ss_pred HHHHHhhcCC--CCCCHHHHHHHHHHcCCCCCCHH--HHHHHHhh----------------------CCcccccccHHHH
Q 027538 35 ENFFDKYANG--GIIDPDGIVTLCKDLELEYTDVR--ILMLAWKL----------------------KAVKLGYFTQDEW 88 (222)
Q Consensus 35 ~~lFd~Y~d~--~~I~~dGi~~~~~dLgv~~ed~~--~LvLa~~l----------------------~a~~~g~~tr~eF 88 (222)
+++-++--++ ...+.++++.+|+-++-+++.+. +-.|.-++ |..=.-+|...+|
T Consensus 3 ~~~iekAT~~~l~~~dw~~ileicD~In~~~~~~k~a~rai~krl~~~n~~v~l~AL~LLe~~vkNCG~~fh~evas~~F 82 (139)
T cd03567 3 EAWLNKATNPSNREEDWEAIQAFCEQINKEPEGPQLAVRLLAHKIQSPQEKEALQALTVLEACMKNCGERFHSEVGKFRF 82 (139)
T ss_pred HHHHHHHcCccCCCCCHHHHHHHHHHHHcCCccHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHcCHHHHHHHHhHHH
Confidence 3344444444 34566677777777776665533 22333333 2222368889999
Q ss_pred HHHhhhcCC------CCHHHHHHH----HHHHHHHhCCCchhHHHHH
Q 027538 89 ETGLKTLQV------NNLSKLKKA----ISELEKEVRTPPNFADFYS 125 (222)
Q Consensus 89 ~~g~~~l~~------dsl~~lk~~----l~~l~~~l~~~~~Fk~~Y~ 125 (222)
++.+.++-- .+-...|.+ |..|...+.+...|++.|+
T Consensus 83 l~el~kl~~~k~~~~~~~~~Vk~kil~li~~W~~~f~~~p~~~~~Y~ 129 (139)
T cd03567 83 LNELIKLVSPKYLGSRTSEKVKTKIIELLYSWTLELPHEPKIKEAYD 129 (139)
T ss_pred HHHHHHHhccccCCCCCCHHHHHHHHHHHHHHHHHhcccchHHHHHH
Confidence 998877532 244445544 4455555544344555553
No 57
>smart00862 Trans_reg_C Transcriptional regulatory protein, C terminal. This domain is almost always found associated with the response regulator receiver domain. It may play a role in DNA binding.
Probab=33.04 E-value=1.2e+02 Score=20.59 Aligned_cols=53 Identities=17% Similarity=0.113 Sum_probs=37.9
Q ss_pred CCCHHHHHHHHhhCCcccccccHHHHHHHhhhcC--CCCHHHHHHHHHHHHHHhCC
Q 027538 63 YTDVRILMLAWKLKAVKLGYFTQDEWETGLKTLQ--VNNLSKLKKAISELEKEVRT 116 (222)
Q Consensus 63 ~ed~~~LvLa~~l~a~~~g~~tr~eF~~g~~~l~--~dsl~~lk~~l~~l~~~l~~ 116 (222)
+..-+.-+|+.++..+.. .+|+++..+-+-.-+ ..+...++..+..|++.|.+
T Consensus 6 Lt~~e~~lL~~L~~~~~~-~vs~~~l~~~lw~~~~~~~~~~~l~~~i~~LR~~l~~ 60 (78)
T smart00862 6 LTPKEFRLLELLLRNPGR-VVSREELLEAVWGDDDDDVDDNTLDVHISRLRKKLED 60 (78)
T ss_pred cCHHHHHHHHHHHhCCCC-ccCHHHHHHHHcCCCCCCCccchHHHHHHHHHHHHhc
Confidence 344555677888866544 799999998743323 34667899999999999853
No 58
>PF13499 EF-hand_7: EF-hand domain pair; PDB: 1TCF_A 2TN4_A 1TN4_A 1A2X_A 2CT9_B 2OTG_B 2OS8_B 1SNL_A 3O4Y_A 3J04_E ....
Probab=32.96 E-value=1.5e+02 Score=19.59 Aligned_cols=42 Identities=21% Similarity=0.273 Sum_probs=31.1
Q ss_pred HhhCCcccccccHHHHHHHhhhcCCCC-HHHHHHHHHHHHHHh
Q 027538 73 WKLKAVKLGYFTQDEWETGLKTLQVNN-LSKLKKAISELEKEV 114 (222)
Q Consensus 73 ~~l~a~~~g~~tr~eF~~g~~~l~~ds-l~~lk~~l~~l~~~l 114 (222)
..+-...-|.|+++|+...+..++... -..++..+..+-+.+
T Consensus 7 ~~~D~d~~G~i~~~el~~~~~~~~~~~~~~~~~~~~~~~~~~~ 49 (66)
T PF13499_consen 7 KKFDKDGDGYISKEELRRALKHLGRDMSDEESDEMIDQIFREF 49 (66)
T ss_dssp HHHSTTSSSEEEHHHHHHHHHHTTSHSTHHHHHHHHHHHHHHH
T ss_pred HHHcCCccCCCCHHHHHHHHHHhcccccHHHHHHHHHHHHHHh
Confidence 345556679999999999999998654 556666666666655
No 59
>COG5104 PRP40 Splicing factor [RNA processing and modification]
Probab=32.80 E-value=2.6e+02 Score=27.45 Aligned_cols=66 Identities=17% Similarity=0.170 Sum_probs=39.8
Q ss_pred CccCHHHHHHHHHhhcCC---------CCCCHHHHHHHHHHc-CCCCCCHHHHHHHHh--------hCCcccccccHHHH
Q 027538 27 GKAKAKEIENFFDKYANG---------GIIDPDGIVTLCKDL-ELEYTDVRILMLAWK--------LKAVKLGYFTQDEW 88 (222)
Q Consensus 27 ~~~~~~~l~~lFd~Y~d~---------~~I~~dGi~~~~~dL-gv~~ed~~~LvLa~~--------l~a~~~g~~tr~eF 88 (222)
+.++.+.=.++|.+|+|. ..++...+-+||+-| |+.-|-..+..|+.. |.-..|-.++|..-
T Consensus 250 s~~nE~~krQ~F~~ykdkl~~~ek~~~k~~~~~al~~l~e~lr~l~~E~f~~w~l~~~~fd~~~ry~~n~~mk~l~~~d~ 329 (590)
T COG5104 250 SVVNEKTKRQTFQKYKDKLGCYEKYVGKHMGGTALGRLEEVLRSLGSETFIIWLLNHYVFDSVVRYLKNKEMKPLDRKDI 329 (590)
T ss_pred hhcchHHHHHHHHHHHHHhhhHHHHHHHhhcccchHHHHHHHHhcCcccchhhhhhhhhhcccHHHHhhcccCcccHHHH
Confidence 556777888999999985 235555666666644 223343444444443 34456778888765
Q ss_pred HHHh
Q 027538 89 ETGL 92 (222)
Q Consensus 89 ~~g~ 92 (222)
+...
T Consensus 330 L~~f 333 (590)
T COG5104 330 LFSF 333 (590)
T ss_pred HHHH
Confidence 4443
No 60
>PF04659 Arch_fla_DE: Archaeal flagella protein ; InterPro: IPR006752 Archaeal flagella are unique motility structures, and the absence of bacterial structural motility genes in the complete genome sequences of flagellated archaeal species has always suggested that archaeal flagellar biogenesis is likely mediated by novel components. FlaD and FlaE, are present in the cell as membrane-associated proteins but are not major components of isolated flagellar filaments. Interestingly, flaD was found to encode two proteins, each translated from a separate ribosome binding site. This group of sequences contain the archaeal flaD and flaE proteins. The conserved region that defines these sequences is found in the N-teminal region of flaE but towards the C-terminal region of flaD [].; GO: 0001539 ciliary or flagellar motility
Probab=30.10 E-value=89 Score=24.02 Aligned_cols=53 Identities=13% Similarity=0.330 Sum_probs=35.7
Q ss_pred HHHHHHHHHhcC-------------CccccChhhhhHHHHHhhhcCCCCCCCCCCCCCchhhHHHHH
Q 027538 161 VDLLIDYLKVQS-------------NYKVINLDQWLGIFRFCNEISFPDLENYDETQAWPLILDNFV 214 (222)
Q Consensus 161 l~~W~~Fl~~~~-------------~~k~IskD~W~~~l~F~~~v~~~dls~YDe~~AWP~liDeFV 214 (222)
+=.|++||.+.- .-.-||.+.=.++++|++.++ .+-..-+..+.|..-+||=+
T Consensus 21 ~~eWLefLve~~G~~~~~~~L~YY~~igWISe~V~~~L~~~~~G~~-~~~~~~~~~~~~~Lt~~DH~ 86 (99)
T PF04659_consen 21 VFEWLEFLVERVGHNNAADALDYYESIGWISEEVREQLLKYLKGFK-YDHDDFEWKPSWKLTIDDHI 86 (99)
T ss_pred HHHHHHHHHHHcccccHHHHHHHHHHcCCcCHHHHHHHHHHHhCCC-CCccccccCCCCCCCHHHHH
Confidence 345888887541 234699999999999999664 22222233688888887643
No 61
>KOG2873 consensus Ubiquinol cytochrome c reductase assembly protein CBP3 [Energy production and conversion]
Probab=29.26 E-value=1.2e+02 Score=27.55 Aligned_cols=49 Identities=18% Similarity=0.239 Sum_probs=36.0
Q ss_pred hHHHHHhHhhhcccccccccccHHHHHHHHhHhcCCC---ChhhHHHHHHHHHhc
Q 027538 120 FADFYSFAFRYHLTEEKQKNIDIETICELLNLVLGPQ---FRRQVDLLIDYLKVQ 171 (222)
Q Consensus 120 Fk~~Y~f~F~f~~~~~~qk~L~~e~Ai~~W~lll~~~---~~~~l~~W~~Fl~~~ 171 (222)
++++|.=.|.|- + |=-+=+-..|+++|+-||.++ -+.|++.-++|++.+
T Consensus 201 ~~qf~gaifaYD--e-G~l~dD~vLA~alWRnlF~~r~~~D~~hle~vV~YvR~q 252 (284)
T KOG2873|consen 201 ERQFYGAIFAYD--E-GFLSDDRVLATALWRNLFSGRGNVDLVHLEAVVRYVRSQ 252 (284)
T ss_pred HHHHHHHHHHhc--c-cccccchHHHHHHHHHHhCCCCCcCHHHHHHHHHHHHHH
Confidence 567777777763 2 444445588999999999986 246899999999864
No 62
>cd05031 S-100A10_like S-100A10_like: S-100A10 domain found in proteins similar to S100A10. S100A10 is a member of the S100 family of EF-hand superfamily of calcium-binding proteins. Note that the S-100 hierarchy, to which this S-100A1_like group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100 proteins are expressed exclusively in vertebrates, and are implicated in intracellular and extracellular regulatory activities. A unique feature of S100A10 is that it contains mutation in both of the calcium binding sites, making it calcium insensitive. S100A10 has been detected in brain, heart, gastrointestinal tract, kidney, liver, lung, spleen, testes, epidermis, aorta, and thymus. Structural data supports the homo- and hetero-dimeric as well as hetero-tetrameric nature of the protein. S100A10 has multiple binding partners in its calcium free state and is therefore involved in many diverse biological functions.
Probab=28.43 E-value=1e+02 Score=22.43 Aligned_cols=31 Identities=13% Similarity=0.237 Sum_probs=20.5
Q ss_pred cccccHHHHHHHhhh-----cCCC-CHHHHHHHHHHH
Q 027538 80 LGYFTQDEWETGLKT-----LQVN-NLSKLKKAISEL 110 (222)
Q Consensus 80 ~g~~tr~eF~~g~~~-----l~~d-sl~~lk~~l~~l 110 (222)
-|.|+++|+...+.. +|+. +-+.++..+..+
T Consensus 24 dG~Is~~El~~~l~~~~g~~lg~~~s~~ei~~~~~~~ 60 (94)
T cd05031 24 KNTLSRKELKKLMEKELSEFLKNQKDPMAVDKIMKDL 60 (94)
T ss_pred CCeECHHHHHHHHHHHhHHHhhccccHHHHHHHHHHh
Confidence 489999999998876 3433 444455544443
No 63
>PF00486 Trans_reg_C: Transcriptional regulatory protein, C terminal; InterPro: IPR001867 Two-component signal transduction systems enable bacteria to sense, respond, and adapt to a wide range of environments, stressors, and growth conditions []. Some bacteria can contain up to as many as 200 two-component systems that need tight regulation to prevent unwanted cross-talk []. These pathways have been adapted to response to a wide variety of stimuli, including nutrients, cellular redox state, changes in osmolarity, quorum signals, antibiotics, and more []. Two-component systems are comprised of a sensor histidine kinase (HK) and its cognate response regulator (RR) []. The HK catalyses its own auto-phosphorylation followed by the transfer of the phosphoryl group to the receiver domain on RR; phosphorylation of the RR usually activates an attached output domain, which can then effect changes in cellular physiology, often by regulating gene expression. Some HK are bifunctional, catalysing both the phosphorylation and dephosphorylation of their cognate RR. The input stimuli can regulate either the kinase or phosphatase activity of the bifunctional HK. A variant of the two-component system is the phospho-relay system. Here a hybrid HK auto-phosphorylates and then transfers the phosphoryl group to an internal receiver domain, rather than to a separate RR protein. The phosphoryl group is then shuttled to histidine phosphotransferase (HPT) and subsequently to a terminal RR, which can evoke the desired response [, ]. This entry represents a domain that is almost always found associated with the response regulator receiver domain (see IPR001789 from INTERPRO). It may play a role in DNA binding [].; GO: 0000156 two-component response regulator activity, 0003677 DNA binding, 0000160 two-component signal transduction system (phosphorelay), 0006355 regulation of transcription, DNA-dependent; PDB: 2K4J_A 2JPB_A 1ODD_A 1OPC_A 1KGS_A 2PMU_E 2JZY_A 1GXP_B 1QQI_A 2Z33_A ....
Probab=27.90 E-value=1.3e+02 Score=20.35 Aligned_cols=50 Identities=18% Similarity=0.134 Sum_probs=36.4
Q ss_pred HHHHHHHHhhCCcccccccHHHHHHHhhhcCC-CCHHHHHHHHHHHHHHhCC
Q 027538 66 VRILMLAWKLKAVKLGYFTQDEWETGLKTLQV-NNLSKLKKAISELEKEVRT 116 (222)
Q Consensus 66 ~~~LvLa~~l~a~~~g~~tr~eF~~g~~~l~~-dsl~~lk~~l~~l~~~l~~ 116 (222)
.+.-+|+.++..+. -.+|+++..+.+-.-.. .+-..|..+|..|++.|.+
T Consensus 9 ~e~~lL~~L~~~~~-~~vs~~~l~~~~w~~~~~~~~~~l~~~I~rLR~kL~~ 59 (77)
T PF00486_consen 9 KEFRLLELLLRNPG-RVVSREELIEALWGDEEDVSDNSLDVHISRLRKKLED 59 (77)
T ss_dssp HHHHHHHHHHHTTT-SEEEHHHHHHHHTSSSSTTCTHHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHhCCC-CCCCHHHhCChhhhcccccchhhHHHHHHHHHHHHhh
Confidence 34455666664432 37899999987655454 7888999999999999943
No 64
>PF06535 RGM_N: Repulsive guidance molecule (RGM) N-terminus; InterPro: IPR010536 This entry represents the N-terminal region of several mammalian and one bird sequence from Gallus gallus (Chicken). All of the mammalian proteins are hypothetical and have no known function but Q8JG54 from SWISSPROT from the chicken is annotated as being a repulsive guidance molecule (RGM). RGM is a GPI-linked axon guidance molecule of the retinotectal system. RGM is repulsive for a subset of axons, those from the temporal half of the retina. Temporal retinal axons invade the anterior optic tectum in a superficial layer, and encounter RGM expressed in a gradient with increasing concentration along the anterior-posterior axis. Temporal axons are able to receive posterior-dependent information by sensing gradients or concentrations of guidance cues. Thus, RGM is likely to provide positional information for temporal axons invading the optic tectum in the stratum opticum [].
Probab=27.88 E-value=17 Score=30.49 Aligned_cols=15 Identities=33% Similarity=0.880 Sum_probs=9.6
Q ss_pred CCCCCCCCCCchhhHH
Q 027538 196 DLENYDETQAWPLILD 211 (222)
Q Consensus 196 dls~YDe~~AWP~liD 211 (222)
++.-=-.+||||+ ||
T Consensus 116 ~fqTC~v~GAWPL-Id 130 (161)
T PF06535_consen 116 EFQTCKVEGAWPL-ID 130 (161)
T ss_pred Cceeeeeecceee-ec
Confidence 3444447899994 45
No 65
>PF12174 RST: RCD1-SRO-TAF4 (RST) plant domain; InterPro: IPR022003 This domain is found in many plant proteins including SROs and RCD1s; it is required for interaction with multiple plant transcription factors.
Probab=27.74 E-value=39 Score=24.31 Aligned_cols=16 Identities=13% Similarity=0.312 Sum_probs=13.8
Q ss_pred cccccHHHHHHHhhhc
Q 027538 80 LGYFTQDEWETGLKTL 95 (222)
Q Consensus 80 ~g~~tr~eF~~g~~~l 95 (222)
-++|||+||++.++.+
T Consensus 39 ~~kIsR~~fvr~lR~I 54 (70)
T PF12174_consen 39 KKKISREEFVRKLRQI 54 (70)
T ss_pred HCCCCHHHHHHHHHHH
Confidence 5789999999999874
No 66
>PF06992 Phage_lambda_P: Replication protein P; InterPro: IPR009731 This family consists of several Bacteriophage lambda replication protein P like proteins. The bacteriophage lambda P protein promoters replication of the phage chromosome by recruiting a key component of the cellular replication machinery to the viral origin. Specifically, P protein delivers one or more molecules of Escherichia coli DnaB helicase to a nucleoprotein structure formed by the lambda O initiator at the lambda replication origin [].; GO: 0006270 DNA-dependent DNA replication initiation
Probab=26.81 E-value=1e+02 Score=27.34 Aligned_cols=40 Identities=8% Similarity=0.302 Sum_probs=32.7
Q ss_pred ccHHHHHHHhhhcCCCCHHHHHHHHHHHHHHhC----CCchhHH
Q 027538 83 FTQDEWETGLKTLQVNNLSKLKKAISELEKEVR----TPPNFAD 122 (222)
Q Consensus 83 ~tr~eF~~g~~~l~~dsl~~lk~~l~~l~~~l~----~~~~Fk~ 122 (222)
-.|.+|+.++.+.||.|+++++.-|...++.-+ .+..|-.
T Consensus 65 ~aKr~Wi~~f~engI~t~eQv~~Gm~~aR~~~spF~PS~GqFI~ 108 (233)
T PF06992_consen 65 EAKRQWIKAFAENGITTMEQVRAGMRRARASESPFWPSPGQFIA 108 (233)
T ss_pred HHHHHHHHHHHHcCCCcHHHHHHHHHHHHhcCCCCCCChhHHHH
Confidence 359999999999999999999999999987743 3455533
No 67
>PF14788 EF-hand_10: EF hand; PDB: 1DJW_B 1DJI_B 1DJG_B 1QAS_B 2ISD_B 1DJZ_B 1DJY_B 1DJX_B 1QAT_A 1DJH_A ....
Probab=26.79 E-value=1.8e+02 Score=19.77 Aligned_cols=48 Identities=19% Similarity=0.169 Sum_probs=35.3
Q ss_pred CCHHHHHHHHHHcCCCCCCHHHHHHHHhhCCcccccccHHHHHHHhhh
Q 027538 47 IDPDGIVTLCKDLELEYTDVRILMLAWKLKAVKLGYFTQDEWETGLKT 94 (222)
Q Consensus 47 I~~dGi~~~~~dLgv~~ed~~~LvLa~~l~a~~~g~~tr~eF~~g~~~ 94 (222)
++..-+.+|+..++|++++--...|-..+.-..-|....+||+.=.+.
T Consensus 2 msf~Evk~lLk~~NI~~~~~yA~~LFq~~D~s~~g~Le~~Ef~~Fy~~ 49 (51)
T PF14788_consen 2 MSFKEVKKLLKMMNIEMDDEYARQLFQECDKSQSGRLEGEEFEEFYKR 49 (51)
T ss_dssp BEHHHHHHHHHHTT----HHHHHHHHHHH-SSSSSEBEHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHccCcCHHHHHHHHHHhcccCCCCccHHHHHHHHHH
Confidence 345668899999999999999999999998888899999999865443
No 68
>PLN02952 phosphoinositide phospholipase C
Probab=26.67 E-value=1.7e+02 Score=29.49 Aligned_cols=65 Identities=12% Similarity=0.144 Sum_probs=43.3
Q ss_pred cCHHHHHHHHHhhcCC-CCCCHHHHHHHHHHcCCC----CCCHHHHHHHHh--hC-Cc--ccccccHHHHHHHhh
Q 027538 29 AKAKEIENFFDKYANG-GIIDPDGIVTLCKDLELE----YTDVRILMLAWK--LK-AV--KLGYFTQDEWETGLK 93 (222)
Q Consensus 29 ~~~~~l~~lFd~Y~d~-~~I~~dGi~~~~~dLgv~----~ed~~~LvLa~~--l~-a~--~~g~~tr~eF~~g~~ 93 (222)
..+++|..+|.+|... +.|+.+.+.+|+.+-.=+ .++..-|+-... -+ .. .-+.++.++|..-+.
T Consensus 35 ~~r~ei~~lf~~~~~~~~~mt~~~l~~FL~~~Q~e~~~~~~~~~~i~~~~~~~~~~~~~~~~~~l~~~~F~~~l~ 109 (599)
T PLN02952 35 EPPDDVKDVFCKFSVGGGHMGADQLRRFLVLHQDELDCTLAEAQRIVEEVINRRHHVTRYTRHGLNLDDFFHFLL 109 (599)
T ss_pred CChHHHHHHHHHHhCCCCccCHHHHHHHHHHhCCCcCCCHHHHHHHHHHHHhhccccccccccCcCHHHHHHHHc
Confidence 3688999999999876 789999999999876543 333333321111 01 11 113478899998875
No 69
>KOG0037 consensus Ca2+-binding protein, EF-Hand protein superfamily [Signal transduction mechanisms]
Probab=26.54 E-value=3.6e+02 Score=23.78 Aligned_cols=66 Identities=9% Similarity=0.054 Sum_probs=52.1
Q ss_pred CHHHHHHHHHhhcCC--CCCCHHHHHHHHHHcCCCC-CCHHHHHHHHhhCCcccccccHHHHHHHhhhc
Q 027538 30 KAKEIENFFDKYANG--GIIDPDGIVTLCKDLELEY-TDVRILMLAWKLKAVKLGYFTQDEWETGLKTL 95 (222)
Q Consensus 30 ~~~~l~~lFd~Y~d~--~~I~~dGi~~~~~dLgv~~-ed~~~LvLa~~l~a~~~g~~tr~eF~~g~~~l 95 (222)
..+++..+|..=--+ +.|..+-+++.+...+.++ ..-.+-.|...+..+..|.|.-+||..-|+.+
T Consensus 55 ~~~~~~~~f~~vD~d~sg~i~~~eLq~aLsn~~~~~Fs~~TcrlmI~mfd~~~~G~i~f~EF~~Lw~~i 123 (221)
T KOG0037|consen 55 TFPQLAGWFQSVDRDRSGRILAKELQQALSNGTWSPFSIETCRLMISMFDRDNSGTIGFKEFKALWKYI 123 (221)
T ss_pred ccHHHHHHHHhhCccccccccHHHHHHHhhcCCCCCCCHHHHHHHHHHhcCCCCCccCHHHHHHHHHHH
Confidence 355777787765333 7899999999998888887 44556677788999999999999998877665
No 70
>PF00046 Homeobox: Homeobox domain not present here.; InterPro: IPR001356 The homeobox domain was first identified in a number of drosophila homeotic and segmentation proteins, but is now known to be well-conserved in many other animals, including vertebrates [, , ]. Hox genes encode homeodomain-containing transcriptional regulators that operate differential genetic programs along the anterior-posterior axis of animal bodies []. The domain binds DNA through a helix-turn-helix (HTH) structure. The HTH motif is characterised by two alpha-helices, which make intimate contacts with the DNA and are joined by a short turn. The second helix binds to DNA via a number of hydrogen bonds and hydrophobic interactions, which occur between specific side chains and the exposed bases and thymine methyl groups within the major groove of the DNA []. The first helix helps to stabilise the structure. The motif is very similar in sequence and structure in a wide range of DNA-binding proteins (e.g., cro and repressor proteins, homeotic proteins, etc.). One of the principal differences between HTH motifs in these different proteins arises from the stereo-chemical requirement for glycine in the turn which is needed to avoid steric interference of the beta-carbon with the main chain: for cro and repressor proteins the glycine appears to be mandatory, while for many of the homeotic and other DNA-binding proteins the requirement is relaxed.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0043565 sequence-specific DNA binding, 0006355 regulation of transcription, DNA-dependent; PDB: 2DA3_A 1LFB_A 2LFB_A 2ECB_A 2DA5_A 3D1N_O 3A03_A 2XSD_C 3CMY_A 1AHD_P ....
Probab=26.30 E-value=63 Score=21.08 Aligned_cols=34 Identities=24% Similarity=0.340 Sum_probs=25.5
Q ss_pred HHHHHHHHhhcCCCCCCHHHHHHHHHHcCCCCCCHHH
Q 027538 32 KEIENFFDKYANGGIIDPDGIVTLCKDLELEYTDVRI 68 (222)
Q Consensus 32 ~~l~~lFd~Y~d~~~I~~dGi~~~~~dLgv~~ed~~~ 68 (222)
..|++.|+. ...++.+-+..++..|||++..|..
T Consensus 13 ~~L~~~f~~---~~~p~~~~~~~la~~l~l~~~~V~~ 46 (57)
T PF00046_consen 13 KVLEEYFQE---NPYPSKEEREELAKELGLTERQVKN 46 (57)
T ss_dssp HHHHHHHHH---SSSCHHHHHHHHHHHHTSSHHHHHH
T ss_pred HHHHHHHHH---hcccccccccccccccccccccccc
Confidence 455666664 3578888999999999999876654
No 71
>PF04904 NCD1: NAB conserved region 1 (NCD1); InterPro: IPR006988 Nab1 and Nab2 are co-repressors that specifically interact with and repress transcription mediated by the three members of the NGFI-A (Egr-1, Krox24, zif/268) family of eukaryotic (metazoa) transcription factors []. This entry represents the N-terminal NAB domain, which interacts with the EGR1 inhibitory domain (R1) []. It may also mediate multimerisation.; GO: 0045892 negative regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=26.17 E-value=2e+02 Score=21.41 Aligned_cols=60 Identities=18% Similarity=0.444 Sum_probs=39.6
Q ss_pred HHHHHHHHHhhcCCCCCCHHHHHHHHHHcCCCCCCHHHHHHHHhhCCcccccccHHHHHHHhhhcCCCC----HHHHHHH
Q 027538 31 AKEIENFFDKYANGGIIDPDGIVTLCKDLELEYTDVRILMLAWKLKAVKLGYFTQDEWETGLKTLQVNN----LSKLKKA 106 (222)
Q Consensus 31 ~~~l~~lFd~Y~d~~~I~~dGi~~~~~dLgv~~ed~~~LvLa~~l~a~~~g~~tr~eF~~g~~~l~~ds----l~~lk~~ 106 (222)
+++|-+.|+-+.+ +|.|.++++|+. .++||.+-|.-+|..| +-.|++.
T Consensus 18 rAnLl~Yyd~fi~---~GgDDvqQL~~~-------------------------~e~eF~eim~lvGM~sKPLHVrRlqKA 69 (82)
T PF04904_consen 18 RANLLQYYDTFIA---QGGDDVQQLCEA-------------------------GEEEFLEIMALVGMASKPLHVRRLQKA 69 (82)
T ss_pred HhhHHHHHHHHHH---HcChhHHHHHhc-------------------------ChHHHHHHHHHhCccCccHHHHHHHHH
Confidence 4566677777754 677788887753 3489999999999877 3344444
Q ss_pred HHHHHHHhCCCchhH
Q 027538 107 ISELEKEVRTPPNFA 121 (222)
Q Consensus 107 l~~l~~~l~~~~~Fk 121 (222)
|.++ ..+|..|.
T Consensus 70 L~ew---~~~p~~Fq 81 (82)
T PF04904_consen 70 LQEW---STNPHAFQ 81 (82)
T ss_pred HHHH---hcChhhhc
Confidence 4433 45666664
No 72
>TIGR01565 homeo_ZF_HD homeobox domain, ZF-HD class. This model represents a class of homoebox domain that differs substantially from the typical homoebox domain described in pfam model pfam00046. It is found in both C4 and C3 plants.
Probab=25.97 E-value=1.3e+02 Score=20.82 Aligned_cols=35 Identities=9% Similarity=0.242 Sum_probs=23.5
Q ss_pred HHHHHHHHhhcCC-CCCCHHHHHHHHHHcCCCCCCH
Q 027538 32 KEIENFFDKYANG-GIIDPDGIVTLCKDLELEYTDV 66 (222)
Q Consensus 32 ~~l~~lFd~Y~d~-~~I~~dGi~~~~~dLgv~~ed~ 66 (222)
..|++.|++-.=- ..++.+-...||.+|||+..-+
T Consensus 14 ~~Le~~fe~~~y~~~~~~~~~r~~la~~lgl~~~vv 49 (58)
T TIGR01565 14 EKMRDFAEKLGWKLKDKRREEVREFCEEIGVTRKVF 49 (58)
T ss_pred HHHHHHHHHcCCCCCCCCHHHHHHHHHHhCCCHHHe
Confidence 4566666554211 2277889999999999986543
No 73
>PF07864 DUF1651: Protein of unknown function (DUF1651); InterPro: IPR012447 The proteins in this entry have not been characterised.
Probab=25.26 E-value=47 Score=23.80 Aligned_cols=22 Identities=18% Similarity=0.256 Sum_probs=19.3
Q ss_pred cccccHHHHHHHHhHhcCCCCh
Q 027538 137 QKNIDIETICELLNLVLGPQFR 158 (222)
Q Consensus 137 qk~L~~e~Ai~~W~lll~~~~~ 158 (222)
.|.|.++.|++.|+-|+..++.
T Consensus 47 rr~l~~~~A~e~W~~L~~~GW~ 68 (75)
T PF07864_consen 47 RRRLTREEARELWKELQKTGWR 68 (75)
T ss_pred EEEEEHHHHHHHHHHHHHcCCE
Confidence 5889999999999999987763
No 74
>PLN02964 phosphatidylserine decarboxylase
Probab=25.17 E-value=2.6e+02 Score=28.49 Aligned_cols=61 Identities=15% Similarity=-0.016 Sum_probs=47.0
Q ss_pred HHHHHHhhcCC--CCCCHHHHHHHHHHcCCCCCCHHHHHHHHhhCCcccccccHHHHHHHhhh
Q 027538 34 IENFFDKYANG--GIIDPDGIVTLCKDLELEYTDVRILMLAWKLKAVKLGYFTQDEWETGLKT 94 (222)
Q Consensus 34 l~~lFd~Y~d~--~~I~~dGi~~~~~dLgv~~ed~~~LvLa~~l~a~~~g~~tr~eF~~g~~~ 94 (222)
++++|..+-.+ +.|+.+-+..++..+|-...+-.+.-+--.+.-..-|.|+.+|+.+.|..
T Consensus 181 i~~mf~~~D~DgdG~IdfdEFl~lL~~lg~~~seEEL~eaFk~fDkDgdG~Is~dEL~~vL~~ 243 (644)
T PLN02964 181 ARRILAIVDYDEDGQLSFSEFSDLIKAFGNLVAANKKEELFKAADLNGDGVVTIDELAALLAL 243 (644)
T ss_pred HHHHHHHhCCCCCCeEcHHHHHHHHHHhccCCCHHHHHHHHHHhCCCCCCcCCHHHHHHHHHh
Confidence 78889887433 78999999999999985544444555555566667799999999999888
No 75
>smart00054 EFh EF-hand, calcium binding motif. EF-hands are calcium-binding motifs that occur at least in pairs. Links between disease states and genes encoding EF-hands, particularly the S100 subclass, are emerging. Each motif consists of a 12 residue loop flanked on either side by a 12 residue alpha-helix. EF-hands undergo a conformational change unpon binding calcium ions.
Probab=24.75 E-value=1e+02 Score=15.48 Aligned_cols=18 Identities=22% Similarity=0.169 Sum_probs=11.4
Q ss_pred CcccccccHHHHHHHhhh
Q 027538 77 AVKLGYFTQDEWETGLKT 94 (222)
Q Consensus 77 a~~~g~~tr~eF~~g~~~ 94 (222)
...-|.++.++|...++.
T Consensus 11 ~~~~g~i~~~e~~~~~~~ 28 (29)
T smart00054 11 KDGDGKIDFEEFKDLLKA 28 (29)
T ss_pred CCCCCcEeHHHHHHHHHh
Confidence 334567777777776654
No 76
>KOG0041 consensus Predicted Ca2+-binding protein, EF-Hand protein superfamily [General function prediction only]
Probab=24.52 E-value=2.3e+02 Score=25.07 Aligned_cols=61 Identities=16% Similarity=0.233 Sum_probs=48.1
Q ss_pred HHHHHHHhhcCC--CCCCHHHHHHHHHHcCCCCCCHHHHHHHHhhCCcccccccHHHHHHHhh
Q 027538 33 EIENFFDKYANG--GIIDPDGIVTLCKDLELEYTDVRILMLAWKLKAVKLGYFTQDEWETGLK 93 (222)
Q Consensus 33 ~l~~lFd~Y~d~--~~I~~dGi~~~~~dLgv~~ed~~~LvLa~~l~a~~~g~~tr~eF~~g~~ 93 (222)
.++..|.+|-.+ +.|+..-+-+++|-||-.-..+.+=-+.-.+--..-|.+|--||+--..
T Consensus 100 ~~~~~Fk~yDe~rDgfIdl~ELK~mmEKLgapQTHL~lK~mikeVded~dgklSfreflLIfr 162 (244)
T KOG0041|consen 100 DAESMFKQYDEDRDGFIDLMELKRMMEKLGAPQTHLGLKNMIKEVDEDFDGKLSFREFLLIFR 162 (244)
T ss_pred HHHHHHHHhcccccccccHHHHHHHHHHhCCchhhHHHHHHHHHhhcccccchhHHHHHHHHH
Confidence 345788888655 7899999999999999888887776666666666778899888886654
No 77
>CHL00137 rps13 ribosomal protein S13; Validated
Probab=24.46 E-value=3.2e+02 Score=21.67 Aligned_cols=56 Identities=9% Similarity=0.039 Sum_probs=37.6
Q ss_pred CCCHHHHHHHHHHcCCCCCCHHHHHHHHhhCCcccccccHHHHHHHhhhc--CCCCHHHHHHHHHHHHHHh
Q 027538 46 IIDPDGIVTLCKDLELEYTDVRILMLAWKLKAVKLGYFTQDEWETGLKTL--QVNNLSKLKKAISELEKEV 114 (222)
Q Consensus 46 ~I~~dGi~~~~~dLgv~~ed~~~LvLa~~l~a~~~g~~tr~eF~~g~~~l--~~dsl~~lk~~l~~l~~~l 114 (222)
-||..=..+.|..|||+|. ..+|..|.++...--..+ ....-.+|+..+.+--+.|
T Consensus 24 GIG~~~A~~ic~~lgi~~~-------------~~~~~Lt~~qi~~l~~~i~~~~~i~~dL~~~~~~dI~rl 81 (122)
T CHL00137 24 GIGLTSAKEILEKANIDPD-------------IRTKDLTDEQISALREIIEENYQVEGDLRRFESLNIKRL 81 (122)
T ss_pred cccHHHHHHHHHHcCcCcC-------------cCcccCCHHHHHHHHHHHHHhCcchHHHHHHHHHHHHHH
Confidence 3777888899999999998 778888888866544433 2233345666554433333
No 78
>PRK09849 putative oxidoreductase; Provisional
Probab=24.18 E-value=1e+02 Score=31.52 Aligned_cols=31 Identities=16% Similarity=0.080 Sum_probs=27.3
Q ss_pred HHHHHHcCCCCCCHHHHHHHHhhCCcccccccH
Q 027538 53 VTLCKDLELEYTDVRILMLAWKLKAVKLGYFTQ 85 (222)
Q Consensus 53 ~~~~~dLgv~~ed~~~LvLa~~l~a~~~g~~tr 85 (222)
..+|++||+|. +.-. +|||.|.+-..|.+++
T Consensus 370 n~Lcn~lGlDt-S~G~-tIA~amEl~ekGil~~ 400 (702)
T PRK09849 370 LNLFDDYGLWC-NYGQ-LHRDFTYCYSKGVFKR 400 (702)
T ss_pred HHHHHHhCCcc-cHHH-HHHHHHHHHHCCCCCc
Confidence 38999999999 7644 8999999999999986
No 79
>PF13348 Y_phosphatase3C: Tyrosine phosphatase family C-terminal region; PDB: 1YWF_A 2OZ5_B.
Probab=23.73 E-value=37 Score=23.34 Aligned_cols=51 Identities=14% Similarity=0.160 Sum_probs=24.4
Q ss_pred CCCCchHHHHhhcCCCccCHHHHHHHHHhhcCCCCCCHHHHHHHH-HHcCCCCCCHHHHH
Q 027538 12 APQNPPAVKSSNARSGKAKAKEIENFFDKYANGGIIDPDGIVTLC-KDLELEYTDVRILM 70 (222)
Q Consensus 12 ~~~~~~A~~~~~~~~~~~~~~~l~~lFd~Y~d~~~I~~dGi~~~~-~dLgv~~ed~~~Lv 70 (222)
++...+++..+.+. .+.-|...|+.-... ..|+..|+ +.||++++++.-|.
T Consensus 13 ~~~~~~~~~~~~~~----~~e~l~~~l~~i~~~----yGs~e~Yl~~~lgl~~~~i~~Lr 64 (68)
T PF13348_consen 13 DDDARENLRSLMSV----RPEYLEAALDAIDER----YGSVENYLREELGLSEEDIERLR 64 (68)
T ss_dssp ---------HHHS------HHHHHHHHHHHHHH----HSSHHHHHHHT-T--HHHHHHHH
T ss_pred hhhhhhhhhhhcCc----cHHHHHHHHHHHHHH----cCCHHHHHHHcCCCCHHHHHHHH
Confidence 33344556665554 345666666655432 23888999 77899999887663
No 80
>smart00530 HTH_XRE Helix-turn-helix XRE-family like proteins.
Probab=23.61 E-value=1.3e+02 Score=17.65 Aligned_cols=27 Identities=19% Similarity=0.292 Sum_probs=18.8
Q ss_pred HhhcCC-CCCCHHHHHHHHHHcCCCCCC
Q 027538 39 DKYANG-GIIDPDGIVTLCKDLELEYTD 65 (222)
Q Consensus 39 d~Y~d~-~~I~~dGi~~~~~dLgv~~ed 65 (222)
.+|... ..+..+-+.++|+-||++++.
T Consensus 28 ~~~~~~~~~~~~~~~~~i~~~~~~~~~~ 55 (56)
T smart00530 28 SRIENGKRKPSLETLKKLAKALGVSLDE 55 (56)
T ss_pred HHHHCCCCCCCHHHHHHHHHHhCCChhh
Confidence 334433 356788888888888888764
No 81
>PF10036 RLL: Putative carnitine deficiency-associated protein; InterPro: IPR019265 This family of proteins conserved from nematodes to humans is of approximately 250 amino acids. It is purported to be carnitine deficiency-associated protein but this could not be confirmed. It carries a characteristic RLL sequence-motif. The function is unknown.
Probab=23.57 E-value=82 Score=27.91 Aligned_cols=28 Identities=29% Similarity=0.411 Sum_probs=23.4
Q ss_pred HHHHHHHHHHcCCC-CCCHHHHHHHHhhC
Q 027538 49 PDGIVTLCKDLELE-YTDVRILMLAWKLK 76 (222)
Q Consensus 49 ~dGi~~~~~dLgv~-~ed~~~LvLa~~l~ 76 (222)
++++.+||.|||.. ...-..-+|-|+||
T Consensus 57 ~~~~~kYl~dl~cP~~~~~~~~~ldWLL~ 85 (249)
T PF10036_consen 57 PKAFEKYLKDLGCPFSSESRQEQLDWLLG 85 (249)
T ss_pred HHHHHHHHHhcCCCCcchhHHHHHHHHHH
Confidence 47999999999999 46777888888873
No 82
>PF07261 DnaB_2: Replication initiation and membrane attachment; InterPro: IPR006343 This entry represents a domain found in several bacterial replication initiation and membrane attachment proteins, DnaB and DnaD. The DnaD protein is a component of the PriA primosome. The PriA primosome functions to recruit the replication fork helicase onto the DNA []. Members, both chromosomal or phage-associated, are found in the Bacillus/Clostridium group of Gram-positive bacteria []. The DnaB protein is essential for both replication initiation and membrane attachment of the origin region of the chromosome and Plasmid pUB110 in Bacillus subtilis. It is known that there are two different classes (DnaBI and DnaBII) in the DnaB mutants; DnaBI is essential for both chromosome and pUB110 replication, whereas DnaBII is necessary only for chromosome replication []. This domain tends to be found towards the C terminus of DnaB and DnaD proteins and is alpha helical in nature.; PDB: 2I5U_A 2ZC2_A.
Probab=23.35 E-value=8.7 Score=26.88 Aligned_cols=54 Identities=9% Similarity=0.139 Sum_probs=24.0
Q ss_pred HHHHHHHHHcCCCCCCHHHHHHHHhh--CCcccccccHHHHHHHhhhcCCCCHHHHHHH
Q 027538 50 DGIVTLCKDLELEYTDVRILMLAWKL--KAVKLGYFTQDEWETGLKTLQVNNLSKLKKA 106 (222)
Q Consensus 50 dGi~~~~~dLgv~~ed~~~LvLa~~l--~a~~~g~~tr~eF~~g~~~l~~dsl~~lk~~ 106 (222)
+-+..++++.|.+++ ++..++-+-+ +..+... -+.-++.|...|+.|+++..++
T Consensus 19 ~~l~~~~~~~~~~~~-~v~~ai~~~~~~~~~~~~Y--i~~Il~~W~~~gi~t~e~~~~~ 74 (77)
T PF07261_consen 19 EKLEKWIDDYGFSPE-VVNEAIEYALENNKRSFNY--IEKILNNWKQKGIKTVEDAEEY 74 (77)
T ss_dssp HHHHHHHCCCHHHHH-HHHHHHHHHHHCT--SHHH--HHHHHHHHHHCT--SCCCCT--
T ss_pred HHHHHHHHHcCCCHH-HHHHHHHHHHHcCCCCHHH--HHHHHHHHHHcCCCCHHHHHHH
Confidence 445555554444443 3333333333 2222222 2355677888888887665544
No 83
>PHA01083 hypothetical protein
Probab=22.93 E-value=1.2e+02 Score=25.21 Aligned_cols=46 Identities=13% Similarity=0.094 Sum_probs=36.3
Q ss_pred CCCHHHHHHHHHHcCCCCCCHHHHHHHHhhCCcccccccHHHHHHHhhhc
Q 027538 46 IIDPDGIVTLCKDLELEYTDVRILMLAWKLKAVKLGYFTQDEWETGLKTL 95 (222)
Q Consensus 46 ~I~~dGi~~~~~dLgv~~ed~~~LvLa~~l~a~~~g~~tr~eF~~g~~~l 95 (222)
.|+-+-+..+++-+|+||+.+...+.+.+-+-+.. |.-|.+-.+++
T Consensus 43 ~i~de~A~~LAe~aGiDp~eall~i~aDraetp~~----kalWesIaKKl 88 (149)
T PHA01083 43 YISDEEAIFLAESAGIDPEIALLGCHADRNENPRA----KAIWESIAKKQ 88 (149)
T ss_pred CCCHHHHHHHHHHhCCCHHHHHHHHHHHhcCCHHH----HHHHHHHHHHH
Confidence 68899999999999999999999998888766554 55566655553
No 84
>PF13624 SurA_N_3: SurA N-terminal domain; PDB: 3NRK_A.
Probab=22.88 E-value=81 Score=24.74 Aligned_cols=60 Identities=20% Similarity=0.268 Sum_probs=25.2
Q ss_pred CCHHHHHHHHHHcCCCCCCHHHHHHHHhhCC-cccccccHHHHHHHhhhcCCCCHHHHHHHH
Q 027538 47 IDPDGIVTLCKDLELEYTDVRILMLAWKLKA-VKLGYFTQDEWETGLKTLQVNNLSKLKKAI 107 (222)
Q Consensus 47 I~~dGi~~~~~dLgv~~ed~~~LvLa~~l~a-~~~g~~tr~eF~~g~~~l~~dsl~~lk~~l 107 (222)
|.-.=+.+.++++||.++|-.+--......+ ..-|.++++.|.+.+...|.+ .+++++.|
T Consensus 84 I~~~ll~q~A~~~gi~vsd~ev~~~i~~~~~f~~~g~~~~~~f~~~L~~~g~t-~~~~~~~l 144 (154)
T PF13624_consen 84 IDQKLLLQEAKKLGISVSDAEVDDAIKQIPAFQENGKFDKEAFEEFLKQQGMT-EEEFKEEL 144 (154)
T ss_dssp HHHHHHHHHHHHTT----HHHHHHHHHH--HHHHH----HHHHHHHHH--------------
T ss_pred HHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHhhcc-ccccchhh
Confidence 4455577888999999877665544444221 123889999999999888874 45555544
No 85
>PRK10945 gene expression modulator; Provisional
Probab=22.83 E-value=1.3e+02 Score=21.89 Aligned_cols=38 Identities=21% Similarity=0.443 Sum_probs=29.0
Q ss_pred cHHHHHHHhhhcCCCCHHHHHHHHHHHHHHhCCCchhHHHH
Q 027538 84 TQDEWETGLKTLQVNNLSKLKKAISELEKEVRTPPNFADFY 124 (222)
Q Consensus 84 tr~eF~~g~~~l~~dsl~~lk~~l~~l~~~l~~~~~Fk~~Y 124 (222)
|+.+|+-.++ +|.|.+.|-+.+..++..|.+ ..+..||
T Consensus 7 tk~dyL~~fR--rcss~eTLEkvie~~~~~L~~-~E~~~f~ 44 (72)
T PRK10945 7 TKTDYLMRLR--RCQTIDTLERVIEKNKYELSD-DELAVFY 44 (72)
T ss_pred cHHHHHHHHH--hcCcHHHHHHHHHHhhccCCH-HHHHHHH
Confidence 8889986544 699999999999999988876 3344444
No 86
>PF11772 EpuA: DNA-directed RNA polymerase subunit beta; InterPro: IPR024596 DNA-directed RNA polymerases 2.7.7.6 from EC (also known as DNA-dependent RNA polymerases) are responsible for the polymerisation of ribonucleotides into a sequence complementary to the template DNA. In eukaryotes, there are three different forms of DNA-directed RNA polymerases transcribing different sets of genes. Most RNA polymerases are multimeric enzymes and are composed of a variable number of subunits. The core RNA polymerase complex consists of five subunits (two alpha, one beta, one beta-prime and one omega) and is sufficient for transcription elongation and termination but is unable to initiate transcription. Transcription initiation from promoter elements requires a sixth, dissociable subunit called a sigma factor, which reversibly associates with the core RNA polymerase complex to form a holoenzyme []. The core RNA polymerase complex forms a "crab claw"-like structure with an internal channel running along the full length []. The key functional sites of the enzyme, as defined by mutational and cross-linking analysis, are located on the inner wall of this channel. RNA synthesis follows after the attachment of RNA polymerase to a specific site, the promoter, on the template DNA strand. The RNA synthesis process continues until a termination sequence is reached. The RNA product, which is synthesised in the 5' to 3'direction, is known as the primary transcript. Eukaryotic nuclei contain three distinct types of RNA polymerases that differ in the RNA they synthesise: RNA polymerase I: located in the nucleoli, synthesises precursors of most ribosomal RNAs. RNA polymerase II: occurs in the nucleoplasm, synthesises mRNA precursors. RNA polymerase III: also occurs in the nucleoplasm, synthesises the precursors of 5S ribosomal RNA, the tRNAs, and a variety of other small nuclear and cytosolic RNAs. Eukaryotic cells are also known to contain separate mitochondrial and chloroplast RNA polymerases. Eukaryotic RNA polymerases, whose molecular masses vary in size from 500 to 700 kDa, contain two non-identical large (>100 kDa) subunits and an array of up to 12 different small (less than 50 kDa) subunits. This entry represents the short 60-residue long bacterial family that is the beta subunit of the DNA-directed RNA polymerase, likely to be 2.7.7.6 from EC It is membrane-bound and is referred to by the name EpuA.
Probab=22.52 E-value=62 Score=21.63 Aligned_cols=17 Identities=29% Similarity=0.704 Sum_probs=14.3
Q ss_pred ccccChhhhhHHHHHhh
Q 027538 174 YKVINLDQWLGIFRFCN 190 (222)
Q Consensus 174 ~k~IskD~W~~~l~F~~ 190 (222)
....+.|||+.+.+|+.
T Consensus 29 ~~vf~~~tW~hi~d~~~ 45 (47)
T PF11772_consen 29 FDVFSPDTWQHIIDFFT 45 (47)
T ss_pred HHhCCHHHHHHHHHHHc
Confidence 45789999999999974
No 87
>PF08671 SinI: Anti-repressor SinI; InterPro: IPR010981 The SinR repressor is part of a group of Sin (sporulation inhibition) proteins in Bacillus subtilis that regulate the commitment to sporulation in response to extreme adversity []. SinR is a tetrameric repressor protein that binds to the promoters of genes essential for entry into sporulation and prevents their transcription. This repression is overcome through the activity of SinI, which disrupts the SinR tetramer through the formation of a SinI-SinR heterodimer, thereby allowing sporulation to proceed. The SinR structure consists of two domains: a dimerisation domain stabilised by a hydrophobic core, and a DNA-binding domain that is identical to domains of the bacteriophage 434 CI and Cro proteins that regulate prophage induction. The dimerisation domain is a four-helical bundle formed from two helices from the C-terminal residues of SinR and two helices from the central residues of SinI. These regions in SinR and SinI are similar in both structure and sequence. The interaction of SinR monomers to form tetramers is weaker than between SinR and SinI, since SinI can effectively disrupt SinR tetramers. This entry represents the dimerisation domain in both SinI and SinR proteins.; GO: 0005488 binding, 0006355 regulation of transcription, DNA-dependent; PDB: 1B0N_A 2YAL_A.
Probab=22.23 E-value=93 Score=18.84 Aligned_cols=27 Identities=7% Similarity=0.138 Sum_probs=19.4
Q ss_pred HHHHHHHhcCCccccChhhhhHHHHHhh
Q 027538 163 LLIDYLKVQSNYKVINLDQWLGIFRFCN 190 (222)
Q Consensus 163 ~W~~Fl~~~~~~k~IskD~W~~~l~F~~ 190 (222)
.|++.+.+.. .-+||++.=+.||.|.+
T Consensus 4 EW~~Li~eA~-~~Gls~eeir~FL~~~k 30 (30)
T PF08671_consen 4 EWVELIKEAK-ESGLSKEEIREFLEFNK 30 (30)
T ss_dssp HHHHHHHHHH-HTT--HHHHHHHHHHHH
T ss_pred HHHHHHHHHH-HcCCCHHHHHHHHHhCC
Confidence 5999998753 36899999999988753
No 88
>COG3710 CadC DNA-binding winged-HTH domains [Transcription]
Probab=22.22 E-value=1.2e+02 Score=24.67 Aligned_cols=71 Identities=17% Similarity=0.140 Sum_probs=47.9
Q ss_pred cCCCCCCHHHHHHHHhhCCcccccccHHHHHH-HhhhcCCCCHHHHHHHHHHHHHHhCCC----chhHHHHHhHhhhc
Q 027538 59 LELEYTDVRILMLAWKLKAVKLGYFTQDEWET-GLKTLQVNNLSKLKKAISELEKEVRTP----PNFADFYSFAFRYH 131 (222)
Q Consensus 59 Lgv~~ed~~~LvLa~~l~a~~~g~~tr~eF~~-g~~~l~~dsl~~lk~~l~~l~~~l~~~----~~Fk~~Y~f~F~f~ 131 (222)
--|..+..+.-||..+++ ..-..++|+++++ -|..-.+.. ..|.+.|..||+.|.+. ..+..+++==|.|.
T Consensus 28 ~~v~l~~~~~~lL~~L~e-~~geVvsk~eL~~~VW~~~~v~~-~~Ltq~I~~LRr~L~d~~~~~~~I~TvPrrGyk~~ 103 (148)
T COG3710 28 EVVKLGPRELKLLSLLLE-RAGEVVSKDELLDAVWPGRIVTV-NTLTQAISALRRALRDIGDGHRLIATVPRRGYKFT 103 (148)
T ss_pred eEEEecHHHHHHHHHHHh-ccCceecHHHHHHHhCCCceEcc-ChHHHHHHHHHHHHhccCCcceEEEEeCCcceEEe
Confidence 344556677778888887 3445799999999 466654433 23999999999999653 33555555444444
No 89
>PF07647 SAM_2: SAM domain (Sterile alpha motif); InterPro: IPR011510 The sterile alpha motif (SAM) domain is a putative protein interaction module present in a wide variety of proteins [] involved in many biological processes. The SAM domain that spreads over around 70 residues is found in diverse eukaryotic organisms []. SAM domains have been shown to homo- and hetero-oligomerise, forming multiple self-association architectures and also binding to various non-SAM domain-containing proteins [], nevertheless with a low affinity constant []. SAM domains also appear to possess the ability to bind RNA []. Smaug, a protein that helps to establish a morphogen gradient in Drosophila embryos by repressing the translation of nanos (nos) mRNA, binds to the 3' untranslated region (UTR) of nos mRNA via two similar hairpin structures. The 3D crystal structure of the Smaug RNA-binding region shows a cluster of positively charged residues on the Smaug-SAM domain, which could be the RNA-binding surface. This electropositive potential is unique among all previously determined SAM-domain structures and is conserved among Smaug-SAM homologs. These results suggest that the SAM domain might have a primary role in RNA binding. Structural analyses show that the SAM domain is arranged in a small five-helix bundle with two large interfaces []. In the case of the SAM domain of EphB2, each of these interfaces is able to form dimers. The presence of these two distinct intermonomers binding surface suggest that SAM could form extended polymeric structures []. This entry represents a second domain related to the SAM domain. ; GO: 0005515 protein binding; PDB: 1B0X_A 1X9X_B 1OW5_A 1V38_A 3BS7_A 3BS5_A 3TAD_A 3TAC_B 2K60_A 2DL0_A ....
Probab=21.28 E-value=2.6e+02 Score=18.56 Aligned_cols=58 Identities=21% Similarity=0.297 Sum_probs=34.2
Q ss_pred CHHHHHHHHHHcCCCCCCHHHHHHHHhhCC-cccccccHHHHHHHhhhcCCCCHHHHHHHHHHHH
Q 027538 48 DPDGIVTLCKDLELEYTDVRILMLAWKLKA-VKLGYFTQDEWETGLKTLQVNNLSKLKKAISELE 111 (222)
Q Consensus 48 ~~dGi~~~~~dLgv~~ed~~~LvLa~~l~a-~~~g~~tr~eF~~g~~~l~~dsl~~lk~~l~~l~ 111 (222)
+++.+.+++..+|+ +...-.....-+.. ..+-.+|.+.. .++|+.+...-++.+..+.
T Consensus 5 ~~~~v~~WL~~~gl--~~y~~~f~~~~i~g~~~L~~l~~~~L----~~lGI~~~~~r~kll~~i~ 63 (66)
T PF07647_consen 5 SPEDVAEWLKSLGL--EQYADNFRENGIDGLEDLLQLTEEDL----KELGITNLGHRRKLLSAIQ 63 (66)
T ss_dssp CHHHHHHHHHHTTC--GGGHHHHHHTTCSHHHHHTTSCHHHH----HHTTTTHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHCCc--HHHHHHHHHcCCcHHHHHhhCCHHHH----HHcCCCCHHHHHHHHHHHH
Confidence 45667777777777 33333333322222 44566777654 4788888877666665544
No 90
>cd04766 HTH_HspR Helix-Turn-Helix DNA binding domain of the HspR transcription regulator. Helix-turn-helix (HTH) transcription regulator HspR, N-terminal domain. Heat shock protein regulators (HspR) have been shown to regulate expression of specific regulons in response to high temperature or high osmolarity in Streptomyces and Helicobacter, respectively. These proteins share the N-terminal DNA binding domain with other transcription regulators of the MerR superfamily that promote transcription by reconfiguring the spacer between the -35 and -10 promoter elements. A typical MerR regulator is comprised of distinct domains that harbor the regulatory (effector-binding) site and the active (DNA-binding) site. Their conserved N-terminal domains contain predicted winged HTH motifs that mediate DNA binding, while the dissimilar C-terminal domains bind specific coactivator molecules.
Probab=21.12 E-value=85 Score=22.91 Aligned_cols=43 Identities=21% Similarity=0.375 Sum_probs=27.6
Q ss_pred HHHHHHHHHHcCCCCCCHHHHHHHHhhCCcccccccHHHHHHHhhhcCCCCHHHHHHHHHHHHHHhC
Q 027538 49 PDGIVTLCKDLELEYTDVRILMLAWKLKAVKLGYFTQDEWETGLKTLQVNNLSKLKKAISELEKEVR 115 (222)
Q Consensus 49 ~dGi~~~~~dLgv~~ed~~~LvLa~~l~a~~~g~~tr~eF~~g~~~l~~dsl~~lk~~l~~l~~~l~ 115 (222)
+.-+..+..|+|++++++..++- =.+.++.|++.|..|++.++
T Consensus 47 l~~i~~L~~d~g~~l~~i~~~l~------------------------l~~~~~~l~~~l~~l~~~~~ 89 (91)
T cd04766 47 LRRIQRLTQELGVNLAGVKRILE------------------------LEEELAELRAELDELRARLR 89 (91)
T ss_pred HHHHHHHHHHcCCCHHHHHHHHH------------------------HHHHHHHHHHHHHHHHHHhc
Confidence 34555666778888887765553 22456677777777776663
No 91
>smart00368 LRR_RI Leucine rich repeat, ribonuclease inhibitor type.
Probab=21.10 E-value=92 Score=17.87 Aligned_cols=16 Identities=19% Similarity=0.381 Sum_probs=13.8
Q ss_pred CCCCHHHHHHHHHHcC
Q 027538 45 GIIDPDGIVTLCKDLE 60 (222)
Q Consensus 45 ~~I~~dGi~~~~~dLg 60 (222)
+.|+.+|+..+|+.|.
T Consensus 12 N~i~~~G~~~L~~~L~ 27 (28)
T smart00368 12 NKLGDEGARALAEALK 27 (28)
T ss_pred CCCCHHHHHHHHHHhc
Confidence 6799999999998774
No 92
>cd05029 S-100A6 S-100A6: S-100A6 domain found in proteins similar to S100A6. S100A6 is a member of the S100 domain family within EF-hand Ca2+-binding proteins superfamily. Note that the S-100 hierarchy, to which this S-100A6 group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100 proteins exhibit unique patterns of tissue- and cell type-specific expression and have been implicated in the Ca2+-dependent regulation of diverse physiological processes, including cell cycle regulation, differentiation, growth, and metabolic control . S100A6 is normally expressed in the G1 phase of the cell cycle in neuronal cells. The function of S100A6 remains unclear, but evidence suggests that it is involved in cell cycle regulation and exocytosis. S100A6 may also be involved in tumorigenesis; the protein is overexpressed in several tumors. Ca2+ binding to S100A6 leads to a conformational change in the protein, which exposes a hydrophobic surface for interact
Probab=21.04 E-value=2e+02 Score=21.05 Aligned_cols=52 Identities=12% Similarity=0.236 Sum_probs=33.1
Q ss_pred cccccHHHHHHHhhh---cCC-CCHHHHHHHHHHHHHHhCCCchhHHHHHhHhhhc
Q 027538 80 LGYFTQDEWETGLKT---LQV-NNLSKLKKAISELEKEVRTPPNFADFYSFAFRYH 131 (222)
Q Consensus 80 ~g~~tr~eF~~g~~~---l~~-dsl~~lk~~l~~l~~~l~~~~~Fk~~Y~f~F~f~ 131 (222)
-|.|+++|+...++. +|. -|.+.+...+..++..=...-.|.+|-.+....+
T Consensus 26 ~g~Is~~EL~~~l~~~~~lg~k~t~~ev~~m~~~~D~d~dG~Idf~EFv~lm~~l~ 81 (88)
T cd05029 26 KNTLSKKELKELIQKELTIGSKLQDAEIAKLMEDLDRNKDQEVNFQEYVTFLGALA 81 (88)
T ss_pred CCEECHHHHHHHHHHHHhcCCCCCHHHHHHHHHHhcCCCCCCCcHHHHHHHHHHHH
Confidence 579999999999963 453 3556666655555333333446777766655444
No 93
>cd00383 trans_reg_C Effector domain of response regulator. Bacteria and certain eukaryotes like protozoa and higher plants use two-component signal transduction systems to detect and respond to changes in the environment. The system consists of a sensor histidine kinase and a response regulator. The former autophosphorylates in a histidine residue on detecting an external stimulus. The phosphate is then transferred to an invariant aspartate residue in a highly conserved receiver domain of the response regulator. Phosphorylation activates a variable effector domain of the response regulator, which triggers the cellular response. The C-terminal effector domain contains DNA and RNA polymerase binding sites. Several dimers or monomers bind head to tail to small tandem repeats upstream of the genes. The RNA polymerase binding sites interact with the alpha or sigma subunite of RNA polymerase.
Probab=20.93 E-value=2e+02 Score=20.18 Aligned_cols=56 Identities=13% Similarity=0.100 Sum_probs=38.9
Q ss_pred CCCCCCHHHHHHHHhhCCcccccccHHHHHHHhhhcCC-CCHHHHHHHHHHHHHHhCC
Q 027538 60 ELEYTDVRILMLAWKLKAVKLGYFTQDEWETGLKTLQV-NNLSKLKKAISELEKEVRT 116 (222)
Q Consensus 60 gv~~ed~~~LvLa~~l~a~~~g~~tr~eF~~g~~~l~~-dsl~~lk~~l~~l~~~l~~ 116 (222)
.|.+..-+..+|+.++..+. -.+||++-.+.+-.-.. .+-..++..+..|++.|.+
T Consensus 21 ~v~Lt~~e~~lL~~L~~~~~-~~vs~~~l~~~lw~~~~~~~~~~l~~~I~rLRkkl~~ 77 (95)
T cd00383 21 PVELTPKEFELLELLARNPG-RVLSREQLLEAVWGDDYDVDDRTVDVHISRLRKKLED 77 (95)
T ss_pred EEEeCHHHHHHHHHHHhCCC-CcCCHHHHHHHhcCCCCCCCcccHHHHHHHHHHHhcc
Confidence 34455556667777776554 37899999987644332 3567789999999999953
No 94
>PRK05988 formate dehydrogenase subunit gamma; Validated
Probab=20.83 E-value=1.7e+02 Score=24.05 Aligned_cols=31 Identities=16% Similarity=0.324 Sum_probs=26.2
Q ss_pred CCCCHHHHHHHHHHcCCCCCCHHHHHHHHhh
Q 027538 45 GIIDPDGIVTLCKDLELEYTDVRILMLAWKL 75 (222)
Q Consensus 45 ~~I~~dGi~~~~~dLgv~~ed~~~LvLa~~l 75 (222)
+.|..+.+...++-|||.+.++.-++=.|-+
T Consensus 37 G~Ip~e~~~~iA~~l~v~~~~V~~vatFY~~ 67 (156)
T PRK05988 37 GYVPEDAVPVIAEALNLSRAEVHGVITFYHD 67 (156)
T ss_pred CCCCHHHHHHHHHHhCCCHHHHHHHHHHhhc
Confidence 7899999999999999999887776666554
No 95
>cd05026 S-100Z S-100Z: S-100Z domain found in proteins similar to S100Z. S100Z is a member of the S100 domain family within the EF-hand Ca2+-binding proteins superfamily. Note that the S-100 hierarchy, to which this S-100Z group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately.S100 proteins exhibit unique patterns of tissue- and cell type-specific expression and have been implicated in the Ca2+-dependent regulation of diverse physiological processes, including cell cycle regulation, differentiation, growth, and metabolic control. S100Z is normally expressed in various tissues, with its highest level of expression being in spleen and leukocytes. The function of S100Z remains unclear. Preliminary structural data suggests that S100Z is homodimer, however a heterodimer with S100P has been reported. S100Z is capable of binding calcium ions. When calcium binds to S110Z, the protein experiences a conformational change, which exposes hydrophobic surfac
Probab=20.71 E-value=2e+02 Score=21.08 Aligned_cols=52 Identities=13% Similarity=0.206 Sum_probs=30.8
Q ss_pred ccc-cccHHHHHHHhhh-cC-----CCCHHHHHHHHHHHHHHhCCCchhHHHHHhHhhh
Q 027538 79 KLG-YFTQDEWETGLKT-LQ-----VNNLSKLKKAISELEKEVRTPPNFADFYSFAFRY 130 (222)
Q Consensus 79 ~~g-~~tr~eF~~g~~~-l~-----~dsl~~lk~~l~~l~~~l~~~~~Fk~~Y~f~F~f 130 (222)
.-| .||++|+...+.. ++ ..+...+...+.+++..=...-.|.+|-...-..
T Consensus 24 gdg~~Is~~EL~~ll~~~~~~~~~~~~~~~~v~~i~~elD~n~dG~Idf~EF~~l~~~l 82 (93)
T cd05026 24 GDRYKLSKGELKELLQRELTDFLSSQKDPMLVDKIMNDLDSNKDNEVDFNEFVVLVAAL 82 (93)
T ss_pred CCCCEECHHHHHHHHHHHhHHhcccccCHHHHHHHHHHhCCCCCCCCCHHHHHHHHHHH
Confidence 345 5999999999976 32 2244556665555543322334577766555444
Done!