BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 027539
(222 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3HZL|A Chain A, Tyr258phe Mutant Of Nikd, An Unusual Amino Acid Oxidase
Essential For Nikkomycin Biosynthesis: Open Form At
1.55a Resolution
Length = 397
Score = 29.6 bits (65), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 22/97 (22%), Positives = 40/97 (41%), Gaps = 11/97 (11%)
Query: 73 FQHLRKISILRGLCHKVGLELVPRDYD----MDCPNPFTRDDIVSMVPVCKHVGCTSADG 128
++ L+ I R + G +PRDY+ D R + ++ + + G T G
Sbjct: 118 YEWLKATDIER----RFGFRGLPRDYEGFLQPDGGTIDVRGTLAALFTLAQAAGATLRAG 173
Query: 129 RTLLESSKIALDKGKLEDAVNYGTKALARMIAVCGPY 165
T+ E + D + + GT +++ CGPY
Sbjct: 174 ETVTE---LVPDADGVSVTTDRGTYRAGKVVLACGPY 207
>pdb|2Q6U|A Chain A, Semet-Substituted Form Of Nikd
Length = 384
Score = 29.6 bits (65), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 22/97 (22%), Positives = 40/97 (41%), Gaps = 11/97 (11%)
Query: 73 FQHLRKISILRGLCHKVGLELVPRDYD----MDCPNPFTRDDIVSMVPVCKHVGCTSADG 128
++ L+ I R + G +PRDY+ D R + ++ + + G T G
Sbjct: 117 YEWLKATDIER----RFGFRGLPRDYEGFLQPDGGTIDVRGTLAALFTLAQAAGATLRAG 172
Query: 129 RTLLESSKIALDKGKLEDAVNYGTKALARMIAVCGPY 165
T+ E + D + + GT +++ CGPY
Sbjct: 173 ETVTE---LVPDADGVSVTTDRGTYRAGKVVLACGPY 206
>pdb|2OLN|A Chain A, Nikd, An Unusual Amino Acid Oxidase Essential For
Nikkomycin Biosynthesis: Closed Form At 1.15 A
Resolution
pdb|2OLO|A Chain A, Nikd, An Unusual Amino Acid Oxidase Essential For
Nikkomycin Biosynthesis: Open Form At 1.9a Resolution
Length = 397
Score = 29.6 bits (65), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 22/97 (22%), Positives = 40/97 (41%), Gaps = 11/97 (11%)
Query: 73 FQHLRKISILRGLCHKVGLELVPRDYD----MDCPNPFTRDDIVSMVPVCKHVGCTSADG 128
++ L+ I R + G +PRDY+ D R + ++ + + G T G
Sbjct: 118 YEWLKATDIER----RFGFRGLPRDYEGFLQPDGGTIDVRGTLAALFTLAQAAGATLRAG 173
Query: 129 RTLLESSKIALDKGKLEDAVNYGTKALARMIAVCGPY 165
T+ E + D + + GT +++ CGPY
Sbjct: 174 ETVTE---LVPDADGVSVTTDRGTYRAGKVVLACGPY 207
>pdb|2A3N|A Chain A, Crystal Structure Of A Putative
Glucosamine-fructose-6-phosphate Aminotransferase
(stm4540.s) From Salmonella Typhimurium Lt2 At 1.35 A
Resolution
Length = 355
Score = 28.5 bits (62), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 15/46 (32%), Positives = 22/46 (47%)
Query: 168 TTASTYSLLAVVLYHTGDFNQVRQSSVVFQCQLGDSKSSIIITSFC 213
TT Y A L H G+ + S V+ + GD+K S+ I +C
Sbjct: 80 TTLPVYVEQAAELIHKGNKRLNKDSVVITLSKSGDTKESVAIAEWC 125
>pdb|3NF1|A Chain A, Crystal Structure Of The Tpr Domain Of Kinesin Light Chain
1
Length = 311
Score = 27.7 bits (60), Expect = 5.4, Method: Compositional matrix adjust.
Identities = 24/84 (28%), Positives = 35/84 (41%), Gaps = 9/84 (10%)
Query: 115 VPVCKHV--------GCTSADGRTLLES-SKIALDKGKLEDAVNYGTKALARMIAVCGPY 165
VP+CK G D T+L + + D+ K +DA N ALA G
Sbjct: 47 VPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKDAANLLNDALAIREKTLGKD 106
Query: 166 HRTTASTYSLLAVVLYHTGDFNQV 189
H A+T + LAV+ G + +
Sbjct: 107 HPAVAATLNNLAVLYGKRGKYKEA 130
>pdb|1BG0|A Chain A, Transition State Structure Of Arginine Kinase
Length = 356
Score = 26.9 bits (58), Expect = 9.5, Method: Compositional matrix adjust.
Identities = 23/77 (29%), Positives = 36/77 (46%), Gaps = 1/77 (1%)
Query: 71 DEFQHLRKISILRGLCHK-VGLELVPRDYDMDCPNPFTRDDIVSMVPVCKHVGCTSADGR 129
+E HLR IS+ +G K V LV +++ PF+ DD + C T+
Sbjct: 222 NEEDHLRIISMQKGGDLKTVYKRLVTAVDNIESKLPFSHDDRFGFLTFCPTNLGTTMRAS 281
Query: 130 TLLESSKIALDKGKLED 146
++ K+A D+ LED
Sbjct: 282 VHIQLPKLAKDRKVLED 298
>pdb|1P50|A Chain A, Transition State Structure Of An Arginine Kinase Mutant
Length = 356
Score = 26.9 bits (58), Expect = 9.6, Method: Compositional matrix adjust.
Identities = 23/77 (29%), Positives = 36/77 (46%), Gaps = 1/77 (1%)
Query: 71 DEFQHLRKISILRGLCHK-VGLELVPRDYDMDCPNPFTRDDIVSMVPVCKHVGCTSADGR 129
+E HLR IS+ +G K V LV +++ PF+ DD + C T+
Sbjct: 222 NEQDHLRIISMQKGGDLKTVYKRLVTAVDNIESKLPFSHDDRFGFLTFCPTNLGTTMRAS 281
Query: 130 TLLESSKIALDKGKLED 146
++ K+A D+ LED
Sbjct: 282 VHIQLPKLAKDRKVLED 298
>pdb|1M15|A Chain A, Transition State Structure Of Arginine Kinase
pdb|3M10|A Chain A, Substrate-Free Form Of Arginine Kinase
pdb|3M10|B Chain B, Substrate-Free Form Of Arginine Kinase
pdb|4GVY|A Chain A, Crystal Structure Of Arginine Kinase In Complex With
L-Citrulline And Mgadp
pdb|4GVZ|A Chain A, Crystal Structure Of Arginine Kinase In Complex With
D-Arginine, Mgadp, And Nitrate.
pdb|4GW0|A Chain A, Crystal Structure Of Arginine Kinase In Complex With
Imino-L- Ornithine, Mgadp, And Nitrate.
pdb|4GW2|A Chain A, Crystal Structure Of Arginine Kinase In Complex With
L-Ornithine, Mgadp, And Nitrate
Length = 357
Score = 26.9 bits (58), Expect = 9.7, Method: Compositional matrix adjust.
Identities = 23/77 (29%), Positives = 36/77 (46%), Gaps = 1/77 (1%)
Query: 71 DEFQHLRKISILRGLCHK-VGLELVPRDYDMDCPNPFTRDDIVSMVPVCKHVGCTSADGR 129
+E HLR IS+ +G K V LV +++ PF+ DD + C T+
Sbjct: 223 NEEDHLRIISMQKGGDLKTVYKRLVTAVDNIESKLPFSHDDRFGFLTFCPTNLGTTMRAS 282
Query: 130 TLLESSKIALDKGKLED 146
++ K+A D+ LED
Sbjct: 283 VHIQLPKLAKDRKVLED 299
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.325 0.138 0.432
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 5,980,850
Number of Sequences: 62578
Number of extensions: 219249
Number of successful extensions: 612
Number of sequences better than 100.0: 10
Number of HSP's better than 100.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 9
Number of HSP's that attempted gapping in prelim test: 610
Number of HSP's gapped (non-prelim): 11
length of query: 222
length of database: 14,973,337
effective HSP length: 95
effective length of query: 127
effective length of database: 9,028,427
effective search space: 1146610229
effective search space used: 1146610229
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 49 (23.5 bits)