Query 027539
Match_columns 222
No_of_seqs 156 out of 295
Neff 5.9
Searched_HMMs 46136
Date Fri Mar 29 11:27:28 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/027539.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/027539hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG1839 Uncharacterized protei 100.0 2.6E-34 5.7E-39 290.9 12.4 204 1-216 765-1009(1236)
2 PF12807 eIF3_p135: Translatio 100.0 1.5E-29 3.3E-34 210.4 7.9 100 1-101 49-169 (169)
3 PF13424 TPR_12: Tetratricopep 99.3 3.8E-12 8.3E-17 91.1 4.1 74 127-211 4-77 (78)
4 KOG1840 Kinesin light chain [C 99.1 6.9E-11 1.5E-15 113.7 5.9 82 124-215 236-318 (508)
5 KOG1840 Kinesin light chain [C 98.4 2.8E-07 6.1E-12 89.0 5.6 82 123-214 320-401 (508)
6 PF13374 TPR_10: Tetratricopep 98.4 5.5E-07 1.2E-11 56.4 4.8 41 128-168 2-42 (42)
7 PF13414 TPR_11: TPR repeat; P 98.2 2.3E-06 4.9E-11 59.4 4.6 59 127-197 2-61 (69)
8 PF13432 TPR_16: Tetratricopep 97.9 1.3E-05 2.8E-10 55.2 4.3 51 132-190 1-51 (65)
9 KOG1839 Uncharacterized protei 97.9 1E-06 2.2E-11 91.5 -1.9 141 59-218 562-703 (1236)
10 PF13424 TPR_12: Tetratricopep 97.8 5.8E-06 1.3E-10 58.8 0.6 37 166-213 1-37 (78)
11 CHL00033 ycf3 photosystem I as 97.8 6.8E-05 1.5E-09 61.0 7.0 73 124-211 31-103 (168)
12 PF13374 TPR_10: Tetratricopep 97.6 1.9E-05 4.1E-10 49.2 0.7 37 169-215 1-37 (42)
13 PRK02603 photosystem I assembl 97.6 0.00019 4E-09 58.9 6.6 62 124-190 31-92 (172)
14 PLN03098 LPA1 LOW PSII ACCUMUL 97.4 0.00035 7.7E-09 66.7 7.3 69 126-209 73-141 (453)
15 KOG4626 O-linked N-acetylgluco 97.4 0.00022 4.9E-09 70.5 5.3 62 131-210 357-418 (966)
16 TIGR02795 tol_pal_ybgF tol-pal 97.3 0.0006 1.3E-08 50.6 5.7 57 129-190 3-59 (119)
17 PRK15359 type III secretion sy 97.2 0.0004 8.7E-09 55.8 4.2 58 123-190 55-112 (144)
18 CHL00033 ycf3 photosystem I as 97.2 0.00021 4.5E-09 58.1 2.6 76 129-215 73-148 (168)
19 KOG0553 TPR repeat-containing 97.2 0.00072 1.6E-08 61.5 6.1 77 124-210 77-179 (304)
20 TIGR02521 type_IV_pilW type IV 97.1 0.0013 2.8E-08 52.9 6.5 58 125-190 28-85 (234)
21 PF12895 Apc3: Anaphase-promot 97.1 0.00061 1.3E-08 49.3 3.7 55 127-190 24-78 (84)
22 PF13371 TPR_9: Tetratricopept 97.0 0.00081 1.8E-08 46.8 3.7 48 135-190 2-49 (73)
23 KOG4626 O-linked N-acetylgluco 97.0 0.00067 1.5E-08 67.2 4.1 70 120-209 382-451 (966)
24 TIGR02795 tol_pal_ybgF tol-pal 97.0 0.0019 4.1E-08 47.9 5.5 58 129-191 40-97 (119)
25 PF14559 TPR_19: Tetratricopep 97.0 0.0016 3.4E-08 44.7 4.7 44 139-190 2-45 (68)
26 PF09976 TPR_21: Tetratricopep 97.0 0.0018 3.8E-08 51.7 5.5 65 121-190 40-105 (145)
27 PF13525 YfiO: Outer membrane 96.9 0.0065 1.4E-07 51.5 8.8 73 127-204 4-76 (203)
28 PLN03088 SGT1, suppressor of 96.8 0.002 4.4E-08 59.4 5.7 54 129-190 37-90 (356)
29 PRK15359 type III secretion sy 96.8 0.0019 4.1E-08 51.9 4.8 52 131-190 27-78 (144)
30 TIGR02552 LcrH_SycD type III s 96.8 0.0018 3.9E-08 49.9 4.4 52 131-190 54-105 (135)
31 TIGR03302 OM_YfiO outer membra 96.8 0.0063 1.4E-07 51.4 8.1 55 132-191 170-224 (235)
32 TIGR02552 LcrH_SycD type III s 96.7 0.0026 5.6E-08 49.0 4.9 55 128-190 17-71 (135)
33 PLN03088 SGT1, suppressor of 96.7 0.0024 5.1E-08 58.9 5.2 55 128-190 2-56 (356)
34 PF14938 SNAP: Soluble NSF att 96.7 0.0054 1.2E-07 54.5 7.1 65 124-190 110-175 (282)
35 PRK11189 lipoprotein NlpI; Pro 96.7 0.0031 6.8E-08 56.3 5.7 56 127-190 63-118 (296)
36 PF12688 TPR_5: Tetratrico pep 96.7 0.0083 1.8E-07 47.6 7.3 57 130-191 3-59 (120)
37 TIGR03302 OM_YfiO outer membra 96.6 0.0064 1.4E-07 51.4 6.9 65 125-194 30-94 (235)
38 PRK10370 formate-dependent nit 96.6 0.0059 1.3E-07 51.8 6.5 63 128-190 73-164 (198)
39 TIGR02521 type_IV_pilW type IV 96.5 0.0066 1.4E-07 48.8 6.1 51 132-190 69-119 (234)
40 PRK10866 outer membrane biogen 96.5 0.019 4.1E-07 50.4 9.2 73 125-202 29-101 (243)
41 cd00189 TPR Tetratricopeptide 96.5 0.0042 9.1E-08 41.6 3.9 52 131-190 3-54 (100)
42 TIGR00990 3a0801s09 mitochondr 96.4 0.0036 7.9E-08 61.1 4.6 55 127-190 126-180 (615)
43 PF13176 TPR_7: Tetratricopept 96.4 0.00078 1.7E-08 41.9 -0.0 29 172-210 1-29 (36)
44 PRK11189 lipoprotein NlpI; Pro 96.4 0.0067 1.5E-07 54.2 5.8 58 123-190 95-152 (296)
45 TIGR02917 PEP_TPR_lipo putativ 96.3 0.0082 1.8E-07 58.0 6.3 57 127-191 21-77 (899)
46 PF14938 SNAP: Soluble NSF att 96.3 0.005 1.1E-07 54.6 4.3 60 128-190 75-135 (282)
47 PRK12370 invasion protein regu 96.3 0.0084 1.8E-07 58.2 6.1 59 122-190 334-392 (553)
48 PF09976 TPR_21: Tetratricopep 96.1 0.02 4.3E-07 45.6 6.6 54 131-197 88-141 (145)
49 PRK02603 photosystem I assembl 96.1 0.0049 1.1E-07 50.4 3.0 54 129-190 73-126 (172)
50 PF00515 TPR_1: Tetratricopept 96.1 0.0026 5.7E-08 38.2 1.0 31 170-210 1-31 (34)
51 TIGR00990 3a0801s09 mitochondr 96.0 0.011 2.3E-07 57.8 5.4 48 135-190 372-419 (615)
52 PRK10803 tol-pal system protei 95.9 0.024 5.3E-07 50.5 6.8 62 124-190 138-200 (263)
53 COG3063 PilF Tfp pilus assembl 95.9 0.0088 1.9E-07 53.0 3.7 70 122-209 99-168 (250)
54 cd05804 StaR_like StaR_like; a 95.6 0.03 6.4E-07 49.9 6.3 50 133-190 119-168 (355)
55 PRK15363 pathogenicity island 95.6 0.027 6E-07 46.9 5.4 57 126-190 33-89 (157)
56 PRK09782 bacteriophage N4 rece 95.5 0.025 5.4E-07 59.1 6.2 48 135-190 650-697 (987)
57 PF13176 TPR_7: Tetratricopept 95.5 0.035 7.7E-07 34.3 4.5 31 131-161 2-32 (36)
58 cd00189 TPR Tetratricopeptide 95.4 0.024 5.3E-07 37.8 4.0 54 129-190 35-88 (100)
59 PF12895 Apc3: Anaphase-promot 95.4 0.031 6.8E-07 40.2 4.7 47 140-192 1-47 (84)
60 PF13431 TPR_17: Tetratricopep 95.4 0.01 2.2E-07 36.6 1.8 26 165-190 8-33 (34)
61 PRK11788 tetratricopeptide rep 95.2 0.05 1.1E-06 49.0 6.4 52 131-190 183-234 (389)
62 COG3063 PilF Tfp pilus assembl 95.2 0.019 4.2E-07 50.8 3.5 90 121-220 64-172 (250)
63 TIGR02917 PEP_TPR_lipo putativ 95.2 0.047 1E-06 52.8 6.4 66 123-190 53-145 (899)
64 PRK04841 transcriptional regul 95.1 0.056 1.2E-06 54.5 7.1 61 130-190 533-593 (903)
65 PRK15174 Vi polysaccharide exp 95.1 0.046 9.9E-07 54.4 6.4 58 123-190 281-338 (656)
66 PF07719 TPR_2: Tetratricopept 95.1 0.0098 2.1E-07 35.3 1.0 30 170-209 1-30 (34)
67 PRK10803 tol-pal system protei 95.1 0.066 1.4E-06 47.7 6.7 59 130-197 182-240 (263)
68 KOG4563 Cell cycle-regulated h 95.1 0.061 1.3E-06 50.4 6.6 67 124-190 37-103 (400)
69 COG1729 Uncharacterized protei 95.1 0.1 2.2E-06 46.9 7.8 82 119-206 133-214 (262)
70 PRK11788 tetratricopeptide rep 95.0 0.046 1E-06 49.2 5.5 56 127-190 34-89 (389)
71 PF00515 TPR_1: Tetratricopept 95.0 0.071 1.5E-06 31.8 4.7 31 128-158 1-31 (34)
72 PF07719 TPR_2: Tetratricopept 94.9 0.078 1.7E-06 31.2 4.7 31 128-158 1-31 (34)
73 PF14561 TPR_20: Tetratricopep 94.8 0.19 4.1E-06 37.7 7.5 56 126-181 20-90 (90)
74 PRK15179 Vi polysaccharide bio 94.6 0.071 1.5E-06 53.8 6.1 60 121-190 149-208 (694)
75 COG4105 ComL DNA uptake lipopr 94.6 0.17 3.7E-06 45.2 7.8 75 127-206 33-107 (254)
76 PRK11447 cellulose synthase su 94.5 0.052 1.1E-06 57.2 5.1 52 131-190 354-405 (1157)
77 PRK10153 DNA-binding transcrip 94.3 0.081 1.8E-06 51.6 5.7 67 122-209 416-482 (517)
78 PRK11447 cellulose synthase su 94.2 0.076 1.6E-06 56.0 5.7 49 134-190 275-323 (1157)
79 PRK15174 Vi polysaccharide exp 94.2 0.09 2E-06 52.3 6.0 60 121-190 313-372 (656)
80 PRK10747 putative protoheme IX 94.2 0.11 2.4E-06 48.3 6.1 63 128-209 328-390 (398)
81 PF13181 TPR_8: Tetratricopept 94.2 0.022 4.8E-07 33.9 0.9 30 170-209 1-30 (34)
82 PF13512 TPR_18: Tetratricopep 94.1 0.23 5E-06 40.8 7.1 67 126-197 8-74 (142)
83 PRK12370 invasion protein regu 94.0 0.096 2.1E-06 50.9 5.6 60 121-190 367-426 (553)
84 KOG4555 TPR repeat-containing 94.0 0.15 3.3E-06 42.2 5.7 53 130-190 45-97 (175)
85 KOG0550 Molecular chaperone (D 93.9 0.049 1.1E-06 51.9 3.1 57 130-190 251-307 (486)
86 cd05804 StaR_like StaR_like; a 93.7 0.13 2.9E-06 45.6 5.6 58 131-197 151-209 (355)
87 PRK09782 bacteriophage N4 rece 93.7 0.11 2.3E-06 54.5 5.4 54 129-190 610-663 (987)
88 PF12688 TPR_5: Tetratrico pep 93.6 0.31 6.7E-06 38.6 6.8 58 128-190 38-95 (120)
89 TIGR00540 hemY_coli hemY prote 93.4 0.2 4.3E-06 46.7 6.4 65 122-197 329-393 (409)
90 PF13181 TPR_8: Tetratricopept 93.4 0.23 5.1E-06 29.3 4.6 30 129-158 2-31 (34)
91 PF09295 ChAPs: ChAPs (Chs5p-A 93.3 0.28 6E-06 46.5 7.1 60 127-194 233-292 (395)
92 KOG2076 RNA polymerase III tra 93.0 0.092 2E-06 53.8 3.7 82 119-217 405-486 (895)
93 KOG0543 FKBP-type peptidyl-pro 92.9 0.19 4.2E-06 47.5 5.4 65 126-190 206-277 (397)
94 PF09986 DUF2225: Uncharacteri 92.6 0.42 9.2E-06 41.4 6.8 80 124-206 114-198 (214)
95 PRK15331 chaperone protein Sic 92.5 0.44 9.4E-06 40.1 6.5 59 124-190 33-91 (165)
96 KOG0547 Translocase of outer m 92.3 0.082 1.8E-06 51.5 2.2 57 126-190 113-169 (606)
97 PRK15179 Vi polysaccharide bio 92.1 0.28 6.1E-06 49.6 5.7 54 132-197 124-177 (694)
98 PF13428 TPR_14: Tetratricopep 92.0 0.34 7.3E-06 30.9 4.2 27 131-157 4-30 (44)
99 KOG2002 TPR-containing nuclear 92.0 0.35 7.6E-06 50.2 6.3 81 115-209 401-481 (1018)
100 PRK04841 transcriptional regul 91.9 0.38 8.3E-06 48.6 6.6 58 131-190 694-751 (903)
101 PRK10049 pgaA outer membrane p 91.8 0.29 6.4E-06 49.4 5.6 58 122-190 79-136 (765)
102 PF12569 NARP1: NMDA receptor- 91.5 0.73 1.6E-05 45.1 7.8 72 104-190 177-248 (517)
103 PRK10049 pgaA outer membrane p 91.4 0.44 9.6E-06 48.2 6.3 53 130-190 361-413 (765)
104 PF13429 TPR_15: Tetratricopep 91.2 0.22 4.8E-06 43.4 3.5 92 126-217 144-278 (280)
105 KOG2076 RNA polymerase III tra 91.1 0.53 1.1E-05 48.5 6.4 60 125-192 136-195 (895)
106 PF12862 Apc5: Anaphase-promot 90.9 0.54 1.2E-05 35.0 4.9 53 138-190 8-61 (94)
107 COG5010 TadD Flp pilus assembl 90.7 0.69 1.5E-05 41.5 6.1 59 124-190 96-154 (257)
108 PRK15363 pathogenicity island 90.5 0.48 1E-05 39.5 4.7 54 129-190 70-123 (157)
109 PRK10866 outer membrane biogen 90.5 0.71 1.5E-05 40.5 6.1 49 131-184 72-120 (243)
110 smart00028 TPR Tetratricopepti 90.5 0.14 3.1E-06 27.6 1.1 20 171-190 2-21 (34)
111 PF04212 MIT: MIT (microtubule 90.3 1 2.2E-05 31.7 5.6 54 127-180 4-58 (69)
112 KOG1173 Anaphase-promoting com 90.2 0.43 9.2E-06 47.1 4.7 77 116-210 442-519 (611)
113 PF13429 TPR_15: Tetratricopep 90.1 0.28 6E-06 42.8 3.1 62 122-197 210-271 (280)
114 PF09311 Rab5-bind: Rabaptin-l 90.1 1 2.2E-05 37.9 6.5 44 126-169 138-181 (181)
115 PF10579 Rapsyn_N: Rapsyn N-te 90.0 1.1 2.3E-05 33.5 5.7 62 127-193 5-66 (80)
116 cd02681 MIT_calpain7_1 MIT: do 89.4 5.1 0.00011 29.3 8.9 48 127-174 5-54 (76)
117 PF07721 TPR_4: Tetratricopept 89.4 0.38 8.2E-06 27.6 2.3 20 171-190 2-21 (26)
118 cd02683 MIT_1 MIT: domain cont 89.1 3.8 8.3E-05 29.9 8.1 57 125-181 3-60 (77)
119 PF08631 SPO22: Meiosis protei 88.8 2.3 5.1E-05 37.7 8.1 66 125-190 32-104 (278)
120 cd02678 MIT_VPS4 MIT: domain c 88.7 4.5 9.8E-05 29.0 8.1 55 127-181 5-60 (75)
121 PRK10747 putative protoheme IX 88.5 1.5 3.4E-05 40.7 7.0 56 134-197 159-214 (398)
122 PF13432 TPR_16: Tetratricopep 88.4 1.2 2.5E-05 30.0 4.7 33 123-157 28-60 (65)
123 PF09295 ChAPs: ChAPs (Chs5p-A 88.4 0.66 1.4E-05 44.0 4.5 69 134-210 206-291 (395)
124 KOG0550 Molecular chaperone (D 88.3 0.46 1E-05 45.5 3.3 59 124-190 45-103 (486)
125 KOG0548 Molecular co-chaperone 88.0 1 2.2E-05 44.2 5.5 63 128-190 2-90 (539)
126 PF03704 BTAD: Bacterial trans 87.9 0.35 7.6E-06 38.0 2.1 90 129-218 7-127 (146)
127 KOG2002 TPR-containing nuclear 87.9 1.3 2.8E-05 46.2 6.4 84 79-190 244-327 (1018)
128 PF10516 SHNi-TPR: SHNi-TPR; 87.9 1.5 3.2E-05 28.0 4.5 33 132-164 5-37 (38)
129 COG5010 TadD Flp pilus assembl 87.8 1 2.3E-05 40.3 5.1 71 115-193 121-191 (257)
130 PF13174 TPR_6: Tetratricopept 87.7 0.81 1.8E-05 26.4 3.1 29 130-158 2-30 (33)
131 COG2956 Predicted N-acetylgluc 87.6 0.59 1.3E-05 43.6 3.6 85 130-214 109-241 (389)
132 PF09986 DUF2225: Uncharacteri 87.6 0.25 5.5E-06 42.8 1.1 48 142-190 91-138 (214)
133 TIGR00540 hemY_coli hemY prote 87.6 1.6 3.5E-05 40.6 6.6 56 134-197 159-214 (409)
134 PRK14574 hmsH outer membrane p 87.5 1.3 2.9E-05 45.7 6.4 58 125-190 99-156 (822)
135 PF00244 14-3-3: 14-3-3 protei 87.2 1.5 3.2E-05 38.5 5.7 47 144-190 142-189 (236)
136 cd02680 MIT_calpain7_2 MIT: do 87.1 3.8 8.2E-05 30.0 6.9 55 127-181 5-60 (75)
137 cd02684 MIT_2 MIT: domain cont 87.0 6.2 0.00013 28.6 8.0 56 126-181 4-60 (75)
138 KOG1126 DNA-binding cell divis 86.9 0.49 1.1E-05 47.2 2.7 20 171-190 490-509 (638)
139 COG4235 Cytochrome c biogenesi 86.8 2.4 5.2E-05 38.7 7.0 66 124-190 152-247 (287)
140 PF13414 TPR_11: TPR repeat; P 86.8 0.28 6.1E-06 33.4 0.8 22 169-190 2-23 (69)
141 COG2956 Predicted N-acetylgluc 86.7 2.1 4.6E-05 40.1 6.6 68 120-196 208-275 (389)
142 PF12862 Apc5: Anaphase-promot 86.5 4.4 9.5E-05 30.0 7.2 55 124-180 37-91 (94)
143 KOG4648 Uncharacterized conser 86.4 0.43 9.3E-06 45.1 2.0 54 129-190 98-151 (536)
144 KOG0553 TPR repeat-containing 86.2 0.81 1.8E-05 41.9 3.6 60 130-190 76-135 (304)
145 KOG0548 Molecular co-chaperone 86.2 1.5 3.3E-05 42.9 5.7 57 127-191 357-413 (539)
146 COG4783 Putative Zn-dependent 85.4 1.6 3.5E-05 42.3 5.3 76 135-210 347-448 (484)
147 cd02656 MIT MIT: domain contai 85.2 9.7 0.00021 27.0 8.2 55 127-181 5-60 (75)
148 PF04733 Coatomer_E: Coatomer 85.1 3 6.5E-05 37.6 6.8 52 131-190 204-255 (290)
149 cd02682 MIT_AAA_Arch MIT: doma 85.0 2.8 6.1E-05 30.8 5.3 37 127-163 5-41 (75)
150 KOG2003 TPR repeat-containing 85.0 3.1 6.7E-05 40.8 7.0 58 125-190 521-578 (840)
151 COG1729 Uncharacterized protei 84.8 2.5 5.5E-05 38.0 6.0 59 125-190 177-235 (262)
152 KOG0547 Translocase of outer m 84.6 0.88 1.9E-05 44.5 3.2 76 131-216 397-498 (606)
153 KOG2376 Signal recognition par 84.6 5.3 0.00012 39.9 8.6 82 105-191 157-245 (652)
154 PF14559 TPR_19: Tetratricopep 84.6 2.1 4.6E-05 28.7 4.4 33 122-156 21-53 (68)
155 PF10300 DUF3808: Protein of u 84.3 2.2 4.7E-05 41.0 5.8 65 122-192 263-327 (468)
156 PF13428 TPR_14: Tetratricopep 83.5 0.92 2E-05 28.8 2.0 20 171-190 2-21 (44)
157 KOG1130 Predicted G-alpha GTPa 83.2 0.85 1.9E-05 44.0 2.5 56 133-190 240-295 (639)
158 PF08969 USP8_dimer: USP8 dime 83.1 1.6 3.5E-05 33.8 3.6 52 116-169 24-77 (115)
159 smart00745 MIT Microtubule Int 82.4 15 0.00032 26.0 8.3 56 126-181 6-62 (77)
160 KOG1156 N-terminal acetyltrans 82.3 8.3 0.00018 38.9 8.9 79 104-197 354-432 (700)
161 KOG1173 Anaphase-promoting com 82.1 1.3 2.7E-05 43.9 3.2 59 131-190 417-475 (611)
162 smart00028 TPR Tetratricopepti 81.6 2.4 5.2E-05 22.4 3.1 27 131-157 4-30 (34)
163 PF11817 Foie-gras_1: Foie gra 81.6 11 0.00024 32.9 8.7 68 127-196 177-244 (247)
164 PRK11906 transcriptional regul 81.3 3.4 7.4E-05 40.0 5.8 62 121-190 331-392 (458)
165 PF13174 TPR_6: Tetratricopept 80.6 2.4 5.1E-05 24.3 2.9 19 172-190 2-20 (33)
166 KOG4555 TPR repeat-containing 80.5 8.2 0.00018 32.1 6.9 56 131-190 80-135 (175)
167 KOG4340 Uncharacterized conser 80.5 2 4.3E-05 40.1 3.7 96 80-195 108-203 (459)
168 KOG1155 Anaphase-promoting com 80.4 1.3 2.9E-05 43.0 2.7 68 118-197 422-489 (559)
169 PF11207 DUF2989: Protein of u 79.7 6.7 0.00015 34.1 6.5 50 137-191 149-199 (203)
170 PRK14574 hmsH outer membrane p 78.0 5.5 0.00012 41.2 6.5 78 128-214 34-129 (822)
171 PRK14720 transcript cleavage f 78.0 2.2 4.7E-05 44.6 3.5 59 124-190 27-85 (906)
172 PF13525 YfiO: Outer membrane 77.4 9.1 0.0002 32.1 6.7 50 130-184 44-93 (203)
173 COG4785 NlpI Lipoprotein NlpI, 77.4 2.8 6E-05 37.5 3.5 56 127-190 64-119 (297)
174 COG3118 Thioredoxin domain-con 77.3 6.3 0.00014 36.2 5.9 96 83-190 87-188 (304)
175 PF10516 SHNi-TPR: SHNi-TPR; 77.0 0.51 1.1E-05 30.2 -0.9 34 170-213 1-34 (38)
176 PF03704 BTAD: Bacterial trans 76.6 19 0.00041 28.0 7.9 57 126-190 60-116 (146)
177 cd02677 MIT_SNX15 MIT: domain 75.7 16 0.00034 26.6 6.6 51 127-177 5-56 (75)
178 KOG4234 TPR repeat-containing 75.7 5.2 0.00011 35.4 4.7 62 126-190 93-154 (271)
179 PLN03098 LPA1 LOW PSII ACCUMUL 75.4 1.4 2.9E-05 42.6 1.2 27 164-190 69-95 (453)
180 KOG1585 Protein required for f 75.2 11 0.00023 34.3 6.7 61 128-190 110-170 (308)
181 KOG1126 DNA-binding cell divis 74.6 4.4 9.6E-05 40.6 4.5 55 135-190 319-373 (638)
182 KOG4162 Predicted calmodulin-b 74.5 7.1 0.00015 40.0 5.9 64 128-197 684-777 (799)
183 PRK10370 formate-dependent nit 74.3 2.9 6.2E-05 35.4 2.8 25 166-190 69-93 (198)
184 PRK14720 transcript cleavage f 74.0 4.7 0.0001 42.2 4.7 55 130-197 118-172 (906)
185 PF13512 TPR_18: Tetratricopep 73.5 8.1 0.00018 31.7 5.1 50 131-185 50-99 (142)
186 PF12968 DUF3856: Domain of Un 73.3 20 0.00043 29.3 7.1 65 126-190 7-75 (144)
187 PF13371 TPR_9: Tetratricopept 73.1 13 0.00027 25.2 5.4 31 127-157 28-58 (73)
188 KOG3824 Huntingtin interacting 72.5 16 0.00035 34.4 7.3 81 112-210 96-180 (472)
189 PF07721 TPR_4: Tetratricopept 72.4 5.4 0.00012 22.6 2.8 23 131-153 4-26 (26)
190 KOG1130 Predicted G-alpha GTPa 72.2 7.6 0.00017 37.7 5.3 58 129-190 18-75 (639)
191 PRK10153 DNA-binding transcrip 71.3 13 0.00029 36.3 6.9 71 120-190 331-440 (517)
192 smart00101 14_3_3 14-3-3 homol 71.3 8.2 0.00018 34.3 5.0 48 144-191 144-192 (244)
193 PF06552 TOM20_plant: Plant sp 70.9 6 0.00013 33.9 3.9 40 145-185 45-84 (186)
194 PF14853 Fis1_TPR_C: Fis1 C-te 70.2 5.8 0.00013 27.0 3.0 20 171-190 2-21 (53)
195 PLN02789 farnesyltranstransfer 69.5 18 0.0004 33.1 7.1 55 130-192 38-94 (320)
196 PF13431 TPR_17: Tetratricopep 68.9 5.4 0.00012 24.2 2.4 25 122-148 9-33 (34)
197 PF04910 Tcf25: Transcriptiona 68.6 5.5 0.00012 37.1 3.5 50 110-162 25-74 (360)
198 PLN03081 pentatricopeptide (PP 68.5 9.6 0.00021 37.9 5.4 57 125-190 289-345 (697)
199 KOG1586 Protein required for f 68.5 6.8 0.00015 35.3 3.9 20 141-160 86-105 (288)
200 KOG0508 Ankyrin repeat protein 68.4 0.34 7.4E-06 47.1 -4.5 42 149-190 316-357 (615)
201 KOG4162 Predicted calmodulin-b 66.9 9.4 0.0002 39.2 4.9 84 77-190 450-533 (799)
202 COG3118 Thioredoxin domain-con 66.8 25 0.00053 32.4 7.2 56 126-181 234-304 (304)
203 KOG3081 Vesicle coat complex C 66.7 12 0.00027 34.1 5.2 52 131-190 210-261 (299)
204 PF10373 EST1_DNA_bind: Est1 D 66.7 7.2 0.00016 33.5 3.7 36 147-190 1-36 (278)
205 KOG2003 TPR repeat-containing 66.6 1.8 3.9E-05 42.3 -0.1 51 132-190 494-544 (840)
206 KOG4340 Uncharacterized conser 66.5 7.6 0.00016 36.4 3.9 36 162-201 36-71 (459)
207 PF08631 SPO22: Meiosis protei 66.0 4.6 9.9E-05 35.8 2.3 63 138-210 3-66 (278)
208 PLN03081 pentatricopeptide (PP 65.4 12 0.00026 37.2 5.4 33 165-197 523-555 (697)
209 TIGR03504 FimV_Cterm FimV C-te 64.2 6.1 0.00013 26.0 2.1 24 174-197 3-26 (44)
210 TIGR03504 FimV_Cterm FimV C-te 64.0 24 0.00052 23.1 4.9 25 132-156 3-27 (44)
211 cd02679 MIT_spastin MIT: domai 62.9 18 0.00039 26.7 4.7 40 127-166 7-46 (79)
212 smart00770 Zn_dep_PLPC Zinc de 61.3 31 0.00068 30.7 6.7 76 89-168 75-154 (241)
213 PRK05685 fliS flagellar protei 60.6 37 0.0008 27.1 6.5 55 128-182 35-90 (132)
214 PLN03218 maturation of RBCL 1; 60.1 19 0.00041 38.4 5.9 26 165-191 715-740 (1060)
215 PF12854 PPR_1: PPR repeat 59.3 22 0.00047 21.4 3.9 19 135-153 14-32 (34)
216 PF04733 Coatomer_E: Coatomer 59.2 7.2 0.00016 35.1 2.4 49 134-190 171-221 (290)
217 KOG0543 FKBP-type peptidyl-pro 58.6 28 0.0006 33.2 6.2 74 118-197 281-354 (397)
218 KOG3060 Uncharacterized conser 58.4 14 0.00031 33.5 4.1 74 123-211 149-222 (289)
219 cd07625 BAR_Vps17p The Bin/Amp 57.7 11 0.00024 33.3 3.2 78 110-191 19-96 (230)
220 PF12569 NARP1: NMDA receptor- 57.5 39 0.00084 33.2 7.2 54 129-190 5-58 (517)
221 KOG0508 Ankyrin repeat protein 57.2 11 0.00024 37.0 3.4 50 134-183 343-392 (615)
222 KOG1941 Acetylcholine receptor 56.8 48 0.001 31.9 7.4 61 128-190 206-266 (518)
223 PF01649 Ribosomal_S20p: Ribos 56.2 55 0.0012 24.3 6.3 44 128-171 27-72 (84)
224 PLN03077 Protein ECB2; Provisi 55.9 33 0.00071 35.0 6.7 26 164-190 620-645 (857)
225 COG4783 Putative Zn-dependent 55.8 36 0.00077 33.3 6.5 78 75-156 249-334 (484)
226 KOG1125 TPR repeat-containing 55.6 18 0.00039 36.0 4.5 22 135-156 437-458 (579)
227 KOG1155 Anaphase-promoting com 55.2 60 0.0013 32.0 7.9 62 128-190 466-527 (559)
228 PF11817 Foie-gras_1: Foie gra 55.0 41 0.00089 29.3 6.4 45 144-190 154-198 (247)
229 KOG1586 Protein required for f 54.9 35 0.00076 30.9 5.9 60 127-189 53-112 (288)
230 TIGR00029 S20 ribosomal protei 54.5 64 0.0014 24.2 6.5 45 128-172 28-74 (87)
231 PLN03077 Protein ECB2; Provisi 54.5 51 0.0011 33.6 7.8 42 136-177 432-497 (857)
232 COG0457 NrfG FOG: TPR repeat [ 54.0 28 0.00062 25.7 4.6 57 127-190 166-222 (291)
233 KOG3617 WD40 and TPR repeat-co 52.7 16 0.00035 38.5 3.8 64 128-194 914-991 (1416)
234 PF02259 FAT: FAT domain; Int 52.6 34 0.00073 30.1 5.5 64 127-190 183-278 (352)
235 PF02561 FliS: Flagellar prote 52.2 55 0.0012 25.4 6.1 56 128-183 29-85 (122)
236 KOG1129 TPR repeat-containing 52.2 35 0.00076 32.4 5.6 60 131-190 361-449 (478)
237 PRK00239 rpsT 30S ribosomal pr 52.1 74 0.0016 23.9 6.5 45 128-172 28-74 (88)
238 COG3071 HemY Uncharacterized e 52.0 23 0.00051 33.7 4.5 76 105-190 293-381 (400)
239 KOG1156 N-terminal acetyltrans 51.9 10 0.00022 38.4 2.2 63 134-214 47-109 (700)
240 COG1516 FliS Flagellin-specifi 50.2 80 0.0017 25.7 6.8 54 128-181 31-85 (132)
241 PRK15331 chaperone protein Sic 50.1 28 0.0006 29.3 4.3 51 132-190 75-125 (165)
242 KOG3364 Membrane protein invol 49.5 22 0.00048 29.4 3.5 84 125-212 29-113 (149)
243 PF07720 TPR_3: Tetratricopept 49.3 58 0.0013 20.2 4.7 22 131-152 4-25 (36)
244 KOG0495 HAT repeat protein [RN 49.3 30 0.00066 35.5 5.0 49 134-190 657-705 (913)
245 PLN03218 maturation of RBCL 1; 48.6 30 0.00066 36.9 5.3 48 136-190 587-634 (1060)
246 KOG3616 Selective LIM binding 48.3 13 0.00028 38.7 2.3 82 128-215 708-819 (1636)
247 TIGR00208 fliS flagellar biosy 47.7 77 0.0017 25.0 6.3 54 128-181 31-85 (124)
248 KOG2997 F-box protein FBX9 [Ge 45.7 20 0.00043 33.5 3.0 55 117-179 8-62 (366)
249 TIGR03362 VI_chp_7 type VI sec 45.6 1.6E+02 0.0035 26.8 8.9 135 52-192 117-272 (301)
250 COG4700 Uncharacterized protei 45.6 72 0.0016 28.1 6.2 28 129-156 90-117 (251)
251 PF09613 HrpB1_HrpK: Bacterial 44.9 73 0.0016 26.7 6.0 69 108-186 26-94 (160)
252 PRK11906 transcriptional regul 44.8 58 0.0013 31.7 6.1 77 122-209 244-333 (458)
253 COG2976 Uncharacterized protei 43.9 63 0.0014 28.2 5.6 67 119-191 79-147 (207)
254 KOG0624 dsRNA-activated protei 43.3 70 0.0015 30.7 6.2 67 124-190 34-126 (504)
255 PF04910 Tcf25: Transcriptiona 43.1 16 0.00035 34.0 2.0 42 164-215 34-75 (360)
256 KOG2376 Signal recognition par 43.1 35 0.00075 34.4 4.4 48 132-190 83-130 (652)
257 COG2909 MalT ATP-dependent tra 43.0 72 0.0016 33.5 6.7 75 119-196 449-523 (894)
258 PF02255 PTS_IIA: PTS system, 42.4 74 0.0016 24.1 5.2 37 124-160 10-46 (96)
259 KOG0545 Aryl-hydrocarbon recep 42.1 78 0.0017 29.0 6.0 65 130-194 180-254 (329)
260 PF14863 Alkyl_sulf_dimr: Alky 41.6 65 0.0014 26.2 5.1 56 126-189 68-123 (141)
261 KOG1125 TPR repeat-containing 41.5 37 0.00081 33.9 4.3 58 132-189 502-561 (579)
262 PRK09591 celC cellobiose phosp 40.9 79 0.0017 24.4 5.3 37 124-160 16-52 (104)
263 KOG3616 Selective LIM binding 40.9 28 0.0006 36.5 3.3 72 135-212 772-862 (1636)
264 PF03461 TRCF: TRCF domain; I 40.7 19 0.00041 27.3 1.8 42 53-95 34-75 (101)
265 PF07219 HemY_N: HemY protein 40.3 1.3E+02 0.0028 22.8 6.4 52 126-185 57-108 (108)
266 KOG4642 Chaperone-dependent E3 40.2 26 0.00056 31.7 2.7 59 124-190 6-64 (284)
267 PF10952 DUF2753: Protein of u 40.1 1.5E+02 0.0033 24.2 6.8 56 134-190 7-70 (140)
268 KOG0624 dsRNA-activated protei 39.9 40 0.00087 32.2 4.0 57 129-190 107-163 (504)
269 PF10602 RPN7: 26S proteasome 39.8 22 0.00047 29.7 2.1 42 150-197 18-59 (177)
270 KOG4056 Translocase of outer m 39.5 33 0.00073 28.2 3.1 44 115-158 68-111 (143)
271 cd00215 PTS_IIA_lac PTS_IIA, P 39.0 90 0.002 23.8 5.3 37 124-160 11-47 (97)
272 CHL00102 rps20 ribosomal prote 37.5 1.5E+02 0.0033 22.5 6.3 31 141-171 48-80 (93)
273 TIGR00823 EIIA-LAC phosphotran 37.3 1E+02 0.0022 23.6 5.3 37 124-160 13-49 (99)
274 KOG2880 SMAD6 interacting prot 36.5 56 0.0012 31.0 4.4 45 126-171 33-77 (424)
275 KOG2053 Mitochondrial inherita 36.3 69 0.0015 33.7 5.4 62 122-197 39-100 (932)
276 PRK10454 PTS system N,N'-diace 36.0 1E+02 0.0022 24.3 5.3 37 124-160 27-63 (115)
277 KOG0551 Hsp90 co-chaperone CNS 34.9 1E+02 0.0023 29.1 5.9 59 127-190 80-139 (390)
278 PF14346 DUF4398: Domain of un 34.9 1.2E+02 0.0025 22.7 5.3 37 124-160 41-77 (103)
279 KOG1129 TPR repeat-containing 34.8 40 0.00088 32.0 3.2 61 133-197 228-313 (478)
280 PF13041 PPR_2: PPR repeat fam 34.4 24 0.00053 22.5 1.3 42 171-218 4-45 (50)
281 KOG1174 Anaphase-promoting com 32.5 90 0.0019 30.6 5.2 49 133-190 443-491 (564)
282 KOG2471 TPR repeat-containing 32.4 61 0.0013 32.3 4.1 44 116-159 607-650 (696)
283 KOG3785 Uncharacterized conser 32.0 1E+02 0.0022 29.7 5.4 53 131-190 396-448 (557)
284 cd02682 MIT_AAA_Arch MIT: doma 31.4 45 0.00097 24.4 2.4 26 168-197 4-29 (75)
285 KOG2072 Translation initiation 31.3 83 0.0018 33.0 5.0 43 144-186 239-291 (988)
286 KOG4814 Uncharacterized conser 30.7 64 0.0014 33.1 4.0 59 130-190 356-414 (872)
287 KOG4234 TPR repeat-containing 30.2 1.1E+02 0.0024 27.3 5.0 52 131-190 137-188 (271)
288 PF05053 Menin: Menin; InterP 30.2 90 0.002 31.4 4.9 42 146-190 297-338 (618)
289 PF14498 Glyco_hyd_65N_2: Glyc 30.0 31 0.00068 29.7 1.6 36 122-157 48-83 (236)
290 PF01535 PPR: PPR repeat; Int 30.0 56 0.0012 17.9 2.2 19 172-190 2-20 (31)
291 PF13812 PPR_3: Pentatricopept 30.0 66 0.0014 18.1 2.6 27 171-197 2-28 (34)
292 COG0457 NrfG FOG: TPR repeat [ 30.0 2.2E+02 0.0048 20.8 6.7 52 138-190 98-150 (291)
293 KOG4507 Uncharacterized conser 29.8 53 0.0012 33.5 3.3 65 133-215 647-711 (886)
294 PF10345 Cohesin_load: Cohesin 29.4 1.6E+02 0.0034 29.1 6.6 62 126-190 57-119 (608)
295 KOG2062 26S proteasome regulat 29.1 70 0.0015 33.3 4.0 45 149-197 37-82 (929)
296 COG1447 CelC Phosphotransferas 28.7 1E+02 0.0022 24.1 4.0 34 124-157 15-48 (105)
297 PF02064 MAS20: MAS20 protein 28.0 74 0.0016 25.3 3.3 30 129-158 64-93 (121)
298 PF12652 CotJB: CotJB protein; 28.0 1.4E+02 0.003 22.0 4.5 37 120-168 23-59 (78)
299 COG2976 Uncharacterized protei 27.4 73 0.0016 27.8 3.4 50 132-190 130-179 (207)
300 PLN02789 farnesyltranstransfer 27.2 1.3E+02 0.0028 27.5 5.2 23 134-156 77-100 (320)
301 COG0268 RpsT Ribosomal protein 27.2 2.7E+02 0.0059 21.1 6.0 46 127-172 27-74 (88)
302 KOG3785 Uncharacterized conser 27.1 1.7E+02 0.0036 28.4 5.9 56 151-207 167-222 (557)
303 PF04184 ST7: ST7 protein; In 26.8 91 0.002 30.9 4.2 66 121-190 197-279 (539)
304 KOG2908 26S proteasome regulat 26.7 2.4E+02 0.0052 26.8 6.8 65 125-190 112-177 (380)
305 PF10602 RPN7: 26S proteasome 26.7 2.6E+02 0.0056 23.1 6.6 61 125-190 33-93 (177)
306 KOG1127 TPR repeat-containing 26.0 1.2E+02 0.0026 32.6 5.2 65 122-190 963-1027(1238)
307 PRK10564 maltose regulon perip 25.7 1.5E+02 0.0032 27.4 5.2 39 119-157 247-286 (303)
308 KOG1941 Acetylcholine receptor 25.2 47 0.001 32.0 1.9 60 129-190 123-182 (518)
309 cd08977 SusD starch binding ou 24.9 1.3E+02 0.0028 27.2 4.7 35 163-197 169-208 (359)
310 KOG4648 Uncharacterized conser 24.5 76 0.0016 30.4 3.1 24 176-209 103-126 (536)
311 PF10414 CysG_dimeriser: Siroh 24.2 90 0.002 21.1 2.8 41 116-156 15-60 (60)
312 PF02259 FAT: FAT domain; Int 24.1 4.5E+02 0.0097 22.9 8.0 72 122-197 140-211 (352)
313 cd02679 MIT_spastin MIT: domai 23.8 25 0.00055 25.9 -0.1 34 172-215 10-43 (79)
314 TIGR00756 PPR pentatricopeptid 23.8 1E+02 0.0022 16.9 2.7 19 172-190 2-20 (35)
315 KOG1585 Protein required for f 23.6 2.3E+02 0.0049 26.0 5.9 31 136-166 39-69 (308)
316 PF07079 DUF1347: Protein of u 23.6 1.8E+02 0.004 28.7 5.6 58 124-190 458-515 (549)
317 PF04212 MIT: MIT (microtubule 23.5 80 0.0017 21.8 2.5 25 169-197 4-28 (69)
318 KOG3081 Vesicle coat complex C 23.5 1.8E+02 0.0038 26.8 5.2 51 134-190 177-227 (299)
319 COG4700 Uncharacterized protei 22.2 2.4E+02 0.0051 25.0 5.5 58 122-190 156-213 (251)
320 PF05004 IFRD: Interferon-rela 22.2 4E+02 0.0087 24.2 7.4 56 135-190 111-169 (309)
321 PF05168 HEPN: HEPN domain; I 21.7 2.9E+02 0.0063 19.9 5.4 31 127-157 7-37 (118)
322 PF12968 DUF3856: Domain of Un 21.5 4.6E+02 0.0099 21.5 7.6 59 135-197 62-124 (144)
323 KOG3323 D-Tyr-tRNA (Tyr) deacy 21.5 1.1E+02 0.0023 25.3 3.1 21 144-164 99-119 (149)
324 COG5116 RPN2 26S proteasome re 21.1 62 0.0013 32.9 1.9 25 174-202 63-87 (926)
325 KOG1308 Hsp70-interacting prot 21.1 28 0.00061 32.8 -0.4 49 134-190 120-168 (377)
326 PF04053 Coatomer_WDAD: Coatom 21.0 75 0.0016 30.6 2.5 63 134-205 353-420 (443)
327 KOG1174 Anaphase-promoting com 21.0 2.3E+02 0.005 27.9 5.6 71 131-209 337-407 (564)
328 PF10938 YfdX: YfdX protein; 20.9 1.6E+02 0.0035 24.1 4.2 62 129-190 3-95 (155)
329 PF04840 Vps16_C: Vps16, C-ter 20.8 73 0.0016 29.2 2.3 68 124-214 235-302 (319)
330 COG3947 Response regulator con 20.8 1.1E+02 0.0023 28.7 3.3 53 130-190 281-333 (361)
331 KOG4509 Uncharacterized conser 20.5 1.6E+02 0.0035 25.6 4.1 91 122-216 9-102 (247)
332 PF14357 DUF4404: Domain of un 20.4 1.7E+02 0.0037 21.6 3.8 32 149-184 53-84 (85)
333 COG4785 NlpI Lipoprotein NlpI, 20.4 2.4E+02 0.0052 25.5 5.3 58 128-189 237-294 (297)
334 KOG4322 Anaphase-promoting com 20.3 2.1E+02 0.0045 28.0 5.2 51 144-196 415-465 (482)
335 smart00748 HEPN Higher Eukaryt 20.2 2.6E+02 0.0056 20.8 4.9 30 127-156 3-32 (113)
No 1
>KOG1839 consensus Uncharacterized protein CLU1/cluA/TIF31 involved in mitochondrial morphology/distribution, also found associated with eIF-3 [General function prediction only]
Probab=100.00 E-value=2.6e-34 Score=290.88 Aligned_cols=204 Identities=22% Similarity=0.244 Sum_probs=185.5
Q ss_pred CchhhhhHHHHHHhhcCCCCCchHHHHHHHhhhhcCCCCCCC------cccc--c-----------------------ch
Q 027539 1 MVTQAFKHVLNGVIASVDYLSDLSAAIASSLNFLFGCCEMED------EQSW--N-----------------------ED 49 (222)
Q Consensus 1 mi~RaaKHilr~~l~~~~~~~~~~~~iahfLNcLlg~~~~~~------d~~~--k-----------------------~~ 49 (222)
+++|++||||+.+++.++. ..+++++||||||+||.-.+.. ++.. + ..
T Consensus 765 i~~RslKhvlK~~~r~l~~-~~i~ta~SH~ln~~ls~~~~av~~~~t~~~~~ka~~~~~~~~~~g~~k~~~S~~s~~~l~ 843 (1236)
T KOG1839|consen 765 IALRSLKHVLKDNLRLLGA-DHIQTAASHALNCLLSVMEAAVQKEQTTLEILKAKDLRTQDAAAGTPKPDASISSKGHLS 843 (1236)
T ss_pred HHHHHHHHHHHHHHhhcch-hHHHHHHHHHHHHHhhcccccCCCccchHHHHhhhhhhhhhhccCCCCcccccccccccc
Confidence 4789999999999999995 8999999999999999754322 1100 1 12
Q ss_pred hhhhHHHHHHHhccccccccccccc-------chhhHHHHHHHHHHHceeeeccccCCCC-C--CCCCcCCccccccccc
Q 027539 50 HILRLQWLRTFLGRRFGWSLKDEFQ-------HLRKISILRGLCHKVGLELVPRDYDMDC-P--NPFTRDDIVSMVPVCK 119 (222)
Q Consensus 50 ~~~~~~~i~~~v~~rfry~L~~~~~-------~~~k~~lLR~ic~K~GIQl~~rdY~f~~-~--~~F~~~DI~ni~PvVK 119 (222)
.+.+|.||+...+.+|++..+.+.. +.+++++.|..|.|.|||..+|+|+|++ + ++|..+||+|+.|+||
T Consensus 844 ~s~L~~~I~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~~~~r~~~~e~~~~ks~f~~~Di~~~~p~ik 923 (1236)
T KOG1839|consen 844 VSDLLKYITADSKNKFTAAHDVKSRETILLKNGKSKIAVEKLEKKKRELQKPARNYDFESSEPKSEFNDSDILNLRPVIK 923 (1236)
T ss_pred hhHHHHhccccccccccchhhhhHHHHHhhhcccchhHHHHHHHHhhhcchhhhhccccccCCCCCCCcccccccccccc
Confidence 5678999999999999999986432 6789999999999999999999999998 4 7999999999999999
Q ss_pred ccccCchhHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHcCChhhHhhchHHhhhh
Q 027539 120 HVGCTSADGRTLLESSKIALDKGKLEDAVNYGTKALARMIAVCGPYHRTTASTYSLLAVVLYHTGDFNQVRQSSVVFQCQ 199 (222)
Q Consensus 120 ~~~p~s~~a~~lle~g~~~l~qG~~e~A~~L~~eAL~i~eqV~G~~HpevA~~y~~LA~vy~~~Gd~~eAi~~~~~~~~~ 199 (222)
|+.|.++++++.+|+|+..+++|.+.+|++ ..++++++++++|.+||+++.||..||++|+++||+++|+ .+|
T Consensus 924 ~s~P~~~~a~~~~e~gq~~~~e~~~~~~~~-~~~slnl~~~v~~~~h~~~~~~~~~La~l~~~~~d~~~Ai----~~~-- 996 (1236)
T KOG1839|consen 924 HSSPTVSEAKDSPEQGQEALLEDGFSEAYE-LPESLNLLNNVMGVLHPEVASKYRSLAKLSNRLGDNQEAI----AQQ-- 996 (1236)
T ss_pred cCCCccchhhhhhhhhhhhhcccchhhhhh-hhhhhhHHHHhhhhcchhHHHHHHHHHHHHhhhcchHHHH----Hhc--
Confidence 999999999999999999999999999999 9999999999999999999999999999999999999999 999
Q ss_pred hCCCCceEEEeeeechh
Q 027539 200 LGDSKSSIIITSFCTEV 216 (222)
Q Consensus 200 ~~~~~~a~~i~e~~~~~ 216 (222)
.+|++|.||+.|.
T Consensus 997 ----~ka~ii~eR~~g~ 1009 (1236)
T KOG1839|consen 997 ----RKACIISERVLGK 1009 (1236)
T ss_pred ----ccceeeechhccC
Confidence 8999999999875
No 2
>PF12807 eIF3_p135: Translation initiation factor eIF3 subunit 135
Probab=99.96 E-value=1.5e-29 Score=210.45 Aligned_cols=100 Identities=31% Similarity=0.520 Sum_probs=88.8
Q ss_pred CchhhhhHHHHHHhhcCCCCCchHHHHHHHhhhhcCCCCCCCcc-----c------------ccchhhhhHHHHHHHhcc
Q 027539 1 MVTQAFKHVLNGVIASVDYLSDLSAAIASSLNFLFGCCEMEDEQ-----S------------WNEDHILRLQWLRTFLGR 63 (222)
Q Consensus 1 mi~RaaKHilr~~l~~~~~~~~~~~~iahfLNcLlg~~~~~~d~-----~------------~k~~~~~~~~~i~~~v~~ 63 (222)
||+|++|||||.++++++. ..++.+|+||||||||+..++... . .+.++..+|++|+++++.
T Consensus 49 miaR~~K~i~r~~l~~~~~-~~~~~~v~~~lN~llg~~~~~~~~~~~~~~~~~~~~~~~~~~~~lt~~~l~~~I~~ev~~ 127 (169)
T PF12807_consen 49 MIARAAKHILREYLRSVPQ-SELSSAVSHFLNCLLGSSSNSKPKKEKKEKNSNSKSKSDSSWSKLTPSSLWSEIEKEVKS 127 (169)
T ss_pred HHHHHHHHHHHHHHHccch-hhHHHHHHHHHHHhhCCCccccccccccchhccccccccchhhhcCcHHHHHHHHHHHHH
Confidence 8999999999999999996 799999999999999988765311 0 012367899999999999
Q ss_pred cccccccccccc----hhhHHHHHHHHHHHceeeeccccCCC
Q 027539 64 RFGWSLKDEFQH----LRKISILRGLCHKVGLELVPRDYDMD 101 (222)
Q Consensus 64 rfry~L~~~~~~----~~k~~lLR~ic~K~GIQl~~rdY~f~ 101 (222)
||||+++.+|.. ++|++|||+||+|+||||++|||+||
T Consensus 128 rf~y~l~~~~~~~~~~~~~~~LLR~ic~k~GiQl~~r~Y~f~ 169 (169)
T PF12807_consen 128 RFRYELPEDWFDEKYGLQKIQLLREICQKTGIQLLARDYDFT 169 (169)
T ss_pred hcCCcCchHHhhhhccccHHHHHHHHHHHhCeEeeeecCCCC
Confidence 999999998875 99999999999999999999999997
No 3
>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H ....
Probab=99.27 E-value=3.8e-12 Score=91.11 Aligned_cols=74 Identities=22% Similarity=0.328 Sum_probs=66.3
Q ss_pred hHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHcCChhhHhhchHHhhhhhCCCCce
Q 027539 127 DGRTLLESSKIALDKGKLEDAVNYGTKALARMIAVCGPYHRTTASTYSLLAVVLYHTGDFNQVRQSSVVFQCQLGDSKSS 206 (222)
Q Consensus 127 ~a~~lle~g~~~l~qG~~e~A~~L~~eAL~i~eqV~G~~HpevA~~y~~LA~vy~~~Gd~~eAi~~~~~~~~~~~~~~~a 206 (222)
.+.-+.+.|.++..+|++++|+++|++|+.+ .+.+|+.||+++.++++||.+|+.+|++++|+ .+. ++|
T Consensus 4 ~a~~~~~la~~~~~~~~~~~A~~~~~~al~~-~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~----~~~------~~a 72 (78)
T PF13424_consen 4 TANAYNNLARVYRELGRYDEALDYYEKALDI-EEQLGDDHPDTANTLNNLGECYYRLGDYEEAL----EYY------QKA 72 (78)
T ss_dssp HHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH-HHHTTTHHHHHHHHHHHHHHHHHHTTHHHHHH----HHH------HHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH-HHHHCCCCHHHHHHHHHHHHHHHHcCCHHHHH----HHH------HHH
Confidence 4555677799999999999999999999999 88999999999999999999999999999999 777 678
Q ss_pred EEEee
Q 027539 207 IIITS 211 (222)
Q Consensus 207 ~~i~e 211 (222)
+.|.|
T Consensus 73 l~i~~ 77 (78)
T PF13424_consen 73 LDIFE 77 (78)
T ss_dssp HHHHH
T ss_pred Hhhhc
Confidence 77654
No 4
>KOG1840 consensus Kinesin light chain [Cytoskeleton]
Probab=99.12 E-value=6.9e-11 Score=113.73 Aligned_cols=82 Identities=24% Similarity=0.274 Sum_probs=74.8
Q ss_pred CchhHHHHHH-HHHHHHhcCChHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHcCChhhHhhchHHhhhhhCC
Q 027539 124 TSADGRTLLE-SSKIALDKGKLEDAVNYGTKALARMIAVCGPYHRTTASTYSLLAVVLYHTGDFNQVRQSSVVFQCQLGD 202 (222)
Q Consensus 124 ~s~~a~~lle-~g~~~l~qG~~e~A~~L~~eAL~i~eqV~G~~HpevA~~y~~LA~vy~~~Gd~~eAi~~~~~~~~~~~~ 202 (222)
...+...++. -|..+.++|++++|..+|++||+|+++++|+.||.||..+++||.+|+.+|++++|. .+.
T Consensus 236 ~hl~va~~l~~~a~~y~~~~k~~eAv~ly~~AL~i~e~~~G~~h~~va~~l~nLa~ly~~~GKf~EA~----~~~----- 306 (508)
T KOG1840|consen 236 KHLVVASMLNILALVYRSLGKYDEAVNLYEEALTIREEVFGEDHPAVAATLNNLAVLYYKQGKFAEAE----EYC----- 306 (508)
T ss_pred cCHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhccCChHHHH----HHH-----
Confidence 3555555555 899999999999999999999999999999999999999999999999999999999 888
Q ss_pred CCceEEEeeeech
Q 027539 203 SKSSIIITSFCTE 215 (222)
Q Consensus 203 ~~~a~~i~e~~~~ 215 (222)
++|+.|+++..|
T Consensus 307 -e~Al~I~~~~~~ 318 (508)
T KOG1840|consen 307 -ERALEIYEKLLG 318 (508)
T ss_pred -HHHHHHHHHhhc
Confidence 899999998554
No 5
>KOG1840 consensus Kinesin light chain [Cytoskeleton]
Probab=98.43 E-value=2.8e-07 Score=88.97 Aligned_cols=82 Identities=21% Similarity=0.182 Sum_probs=74.1
Q ss_pred cCchhHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHcCChhhHhhchHHhhhhhCC
Q 027539 123 CTSADGRTLLESSKIALDKGKLEDAVNYGTKALARMIAVCGPYHRTTASTYSLLAVVLYHTGDFNQVRQSSVVFQCQLGD 202 (222)
Q Consensus 123 p~s~~a~~lle~g~~~l~qG~~e~A~~L~~eAL~i~eqV~G~~HpevA~~y~~LA~vy~~~Gd~~eAi~~~~~~~~~~~~ 202 (222)
...-.+..+.+.|.++..++++++|..++.+++.|++++.|+.||.+|..|.+||.+|+++|+|.||. +++
T Consensus 320 ~~~~v~~~l~~~~~~~~~~~~~Eea~~l~q~al~i~~~~~g~~~~~~a~~~~nl~~l~~~~gk~~ea~----~~~----- 390 (508)
T KOG1840|consen 320 SHPEVAAQLSELAAILQSMNEYEEAKKLLQKALKIYLDAPGEDNVNLAKIYANLAELYLKMGKYKEAE----ELY----- 390 (508)
T ss_pred ChHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhhccccchHHHHHHHHHHHHHHHhcchhHHH----HHH-----
Confidence 34456777888899999999999999999999999999999999999999999999999999999999 999
Q ss_pred CCceEEEeeeec
Q 027539 203 SKSSIIITSFCT 214 (222)
Q Consensus 203 ~~~a~~i~e~~~ 214 (222)
|+|+.|.++.-
T Consensus 391 -k~ai~~~~~~~ 401 (508)
T KOG1840|consen 391 -KKAIQILRELL 401 (508)
T ss_pred -HHHHHHHHhcc
Confidence 88888875543
No 6
>PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A.
Probab=98.41 E-value=5.5e-07 Score=56.36 Aligned_cols=41 Identities=22% Similarity=0.260 Sum_probs=26.8
Q ss_pred HHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHhCCCChH
Q 027539 128 GRTLLESSKIALDKGKLEDAVNYGTKALARMIAVCGPYHRT 168 (222)
Q Consensus 128 a~~lle~g~~~l~qG~~e~A~~L~~eAL~i~eqV~G~~Hpe 168 (222)
|..+.+.|..+..+|++++|.+++.+++.++++++|+.|||
T Consensus 2 a~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~G~~Hpd 42 (42)
T PF13374_consen 2 ASALNNLANAYRAQGRYEEALELLEEALEIRERLLGPDHPD 42 (42)
T ss_dssp HHHHHHHHHHHHHCT-HHHHHHHHHHHHHHH----------
T ss_pred HHHHHHHHHHHHhhhhcchhhHHHHHHHHHHHHHhcccccC
Confidence 44556679999999999999999999999999999999997
No 7
>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A ....
Probab=98.20 E-value=2.3e-06 Score=59.41 Aligned_cols=59 Identities=20% Similarity=0.330 Sum_probs=53.0
Q ss_pred hHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHcC-ChhhHhhchHHhh
Q 027539 127 DGRTLLESSKIALDKGKLEDAVNYGTKALARMIAVCGPYHRTTASTYSLLAVVLYHTG-DFNQVRQSSVVFQ 197 (222)
Q Consensus 127 ~a~~lle~g~~~l~qG~~e~A~~L~~eAL~i~eqV~G~~HpevA~~y~~LA~vy~~~G-d~~eAi~~~~~~~ 197 (222)
.|......|..+..+|++++|++.|++|+.+ +|+-+..+.++|.+|..+| ++++|+ .+.
T Consensus 2 ~a~~~~~~g~~~~~~~~~~~A~~~~~~ai~~--------~p~~~~~~~~~g~~~~~~~~~~~~A~----~~~ 61 (69)
T PF13414_consen 2 NAEAWYNLGQIYFQQGDYEEAIEYFEKAIEL--------DPNNAEAYYNLGLAYMKLGKDYEEAI----EDF 61 (69)
T ss_dssp SHHHHHHHHHHHHHTTHHHHHHHHHHHHHHH--------STTHHHHHHHHHHHHHHTTTHHHHHH----HHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc--------CCCCHHHHHHHHHHHHHhCccHHHHH----HHH
Confidence 3667788899999999999999999999987 5777789999999999999 799999 666
No 8
>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B.
Probab=97.95 E-value=1.3e-05 Score=55.15 Aligned_cols=51 Identities=18% Similarity=0.375 Sum_probs=45.5
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHcCChhhHh
Q 027539 132 LESSKIALDKGKLEDAVNYGTKALARMIAVCGPYHRTTASTYSLLAVVLYHTGDFNQVR 190 (222)
Q Consensus 132 le~g~~~l~qG~~e~A~~L~~eAL~i~eqV~G~~HpevA~~y~~LA~vy~~~Gd~~eAi 190 (222)
+..|+.++.+|++++|.+.|++++. .+|+-..++..||.+++.+|++++|+
T Consensus 1 ~~~a~~~~~~g~~~~A~~~~~~~l~--------~~P~~~~a~~~lg~~~~~~g~~~~A~ 51 (65)
T PF13432_consen 1 YALARALYQQGDYDEAIAAFEQALK--------QDPDNPEAWYLLGRILYQQGRYDEAL 51 (65)
T ss_dssp HHHHHHHHHCTHHHHHHHHHHHHHC--------CSTTHHHHHHHHHHHHHHTT-HHHHH
T ss_pred ChHHHHHHHcCCHHHHHHHHHHHHH--------HCCCCHHHHHHHHHHHHHcCCHHHHH
Confidence 4579999999999999999988884 55999999999999999999999999
No 9
>KOG1839 consensus Uncharacterized protein CLU1/cluA/TIF31 involved in mitochondrial morphology/distribution, also found associated with eIF-3 [General function prediction only]
Probab=97.94 E-value=1e-06 Score=91.50 Aligned_cols=141 Identities=44% Similarity=0.635 Sum_probs=121.9
Q ss_pred HHhccccccccccccc-chhhHHHHHHHHHHHceeeeccccCCCCCCCCCcCCcccccccccccccCchhHHHHHHHHHH
Q 027539 59 TFLGRRFGWSLKDEFQ-HLRKISILRGLCHKVGLELVPRDYDMDCPNPFTRDDIVSMVPVCKHVGCTSADGRTLLESSKI 137 (222)
Q Consensus 59 ~~v~~rfry~L~~~~~-~~~k~~lLR~ic~K~GIQl~~rdY~f~~~~~F~~~DI~ni~PvVK~~~p~s~~a~~lle~g~~ 137 (222)
++...||++++..=-. -+.++--.|-.|...++.-..++|.|++..||...|++..+||-|+...-+.+.+ |++..
T Consensus 562 ~~~~~k~pHkl~~lr~Eli~~f~~~~l~~~i~~~e~~~~~~~~ds~~~~~~~d~~~~~~v~~l~~~is~d~~---eS~~~ 638 (1236)
T KOG1839|consen 562 EELAEKYPHKLSLLRPELILKFYEHRLLAFIVAVENAAEDYGFDSSNPFKKSDAIGLVPVHKLVNCISADGR---ESSKL 638 (1236)
T ss_pred hhccccCchhhhhcCHHHHHHHHHHHHHHHHHHHhcchhhccCCccccccccchhhHHHHHHHHHhhccccc---ccccc
Confidence 5667777777765333 5677777777888888888888999999999999999999999999999999998 55655
Q ss_pred HHhcCChHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHcCChhhHhhchHHhhhhhCCCCceEEEeeeechhc
Q 027539 138 ALDKGKLEDAVNYGTKALARMIAVCGPYHRTTASTYSLLAVVLYHTGDFNQVRQSSVVFQCQLGDSKSSIIITSFCTEVL 217 (222)
Q Consensus 138 ~l~qG~~e~A~~L~~eAL~i~eqV~G~~HpevA~~y~~LA~vy~~~Gd~~eAi~~~~~~~~~~~~~~~a~~i~e~~~~~~ 217 (222)
.. ++|.+.+..++.-.-.++|++|..++-+|.+ +.+.++.|++.+|. .++ ++++.|.||..|.-
T Consensus 639 ~~-----~dav~~~~~al~k~~~~~~~~~fnp~~f~s~-~v~~~~t~~~~~a~----~~~------qk~~d~~Erll~~~ 702 (1236)
T KOG1839|consen 639 SL-----DDAVKYATKALVKLVAVCGPYGFNPAGFYSL-AVVLYHTEDFNQAA----IQQ------QKVLDINERLLGLD 702 (1236)
T ss_pred ch-----HHHHHHHHHHHHHHHhhhcccccCccccccC-ceEecCccccchhh----hhh------HhHHHHHHHHhccc
Confidence 55 4899999999999999999999999999998 99999999999999 888 89999999988864
Q ss_pred c
Q 027539 218 I 218 (222)
Q Consensus 218 ~ 218 (222)
|
T Consensus 703 i 703 (1236)
T KOG1839|consen 703 I 703 (1236)
T ss_pred c
Confidence 4
No 10
>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H ....
Probab=97.80 E-value=5.8e-06 Score=58.79 Aligned_cols=37 Identities=24% Similarity=0.319 Sum_probs=30.8
Q ss_pred ChHHHHHHHHHHHHHHHcCChhhHhhchHHhhhhhCCCCceEEEeeee
Q 027539 166 HRTTASTYSLLAVVLYHTGDFNQVRQSSVVFQCQLGDSKSSIIITSFC 213 (222)
Q Consensus 166 HpevA~~y~~LA~vy~~~Gd~~eAi~~~~~~~~~~~~~~~a~~i~e~~ 213 (222)
||+++.+|++||.+|..+|++++|+ .++ ++|+.+ .+.
T Consensus 1 H~~~a~~~~~la~~~~~~~~~~~A~----~~~------~~al~~-~~~ 37 (78)
T PF13424_consen 1 HPDTANAYNNLARVYRELGRYDEAL----DYY------EKALDI-EEQ 37 (78)
T ss_dssp -HHHHHHHHHHHHHHHHTT-HHHHH----HHH------HHHHHH-HHH
T ss_pred CHHHHHHHHHHHHHHHHcCCHHHHH----HHH------HHHHHH-HHH
Confidence 9999999999999999999999999 777 678777 443
No 11
>CHL00033 ycf3 photosystem I assembly protein Ycf3
Probab=97.80 E-value=6.8e-05 Score=61.02 Aligned_cols=73 Identities=8% Similarity=0.042 Sum_probs=61.0
Q ss_pred CchhHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHcCChhhHhhchHHhhhhhCCC
Q 027539 124 TSADGRTLLESSKIALDKGKLEDAVNYGTKALARMIAVCGPYHRTTASTYSLLAVVLYHTGDFNQVRQSSVVFQCQLGDS 203 (222)
Q Consensus 124 ~s~~a~~lle~g~~~l~qG~~e~A~~L~~eAL~i~eqV~G~~HpevA~~y~~LA~vy~~~Gd~~eAi~~~~~~~~~~~~~ 203 (222)
.-.-+.-.+..|..+..+|++++|+..|.+|+.+. +.|++.+.++.+||.+|..+|++++|+ .+.
T Consensus 31 ~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~l~-----~~~~~~~~~~~~lg~~~~~~g~~~eA~----~~~------ 95 (168)
T CHL00033 31 GEKEAFTYYRDGMSAQSEGEYAEALQNYYEAMRLE-----IDPYDRSYILYNIGLIHTSNGEHTKAL----EYY------ 95 (168)
T ss_pred hhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcc-----ccchhhHHHHHHHHHHHHHcCCHHHHH----HHH------
Confidence 33456667788999999999999999999999983 457778899999999999999999999 666
Q ss_pred CceEEEee
Q 027539 204 KSSIIITS 211 (222)
Q Consensus 204 ~~a~~i~e 211 (222)
++|+.+..
T Consensus 96 ~~Al~~~~ 103 (168)
T CHL00033 96 FQALERNP 103 (168)
T ss_pred HHHHHhCc
Confidence 56666544
No 12
>PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A.
Probab=97.60 E-value=1.9e-05 Score=49.21 Aligned_cols=37 Identities=19% Similarity=0.160 Sum_probs=28.4
Q ss_pred HHHHHHHHHHHHHHcCChhhHhhchHHhhhhhCCCCceEEEeeeech
Q 027539 169 TASTYSLLAVVLYHTGDFNQVRQSSVVFQCQLGDSKSSIIITSFCTE 215 (222)
Q Consensus 169 vA~~y~~LA~vy~~~Gd~~eAi~~~~~~~~~~~~~~~a~~i~e~~~~ 215 (222)
||.++++||.+|..+|++++|+ .+. ++|+.|.++..|
T Consensus 1 ta~~~~~la~~~~~~g~~~~A~----~~~------~~al~~~~~~~G 37 (42)
T PF13374_consen 1 TASALNNLANAYRAQGRYEEAL----ELL------EEALEIRERLLG 37 (42)
T ss_dssp -HHHHHHHHHHHHHCT-HHHHH----HHH------HHHHHHH-----
T ss_pred CHHHHHHHHHHHHhhhhcchhh----HHH------HHHHHHHHHHhc
Confidence 6899999999999999999999 888 789999888765
No 13
>PRK02603 photosystem I assembly protein Ycf3; Provisional
Probab=97.59 E-value=0.00019 Score=58.85 Aligned_cols=62 Identities=10% Similarity=0.114 Sum_probs=54.0
Q ss_pred CchhHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHcCChhhHh
Q 027539 124 TSADGRTLLESSKIALDKGKLEDAVNYGTKALARMIAVCGPYHRTTASTYSLLAVVLYHTGDFNQVR 190 (222)
Q Consensus 124 ~s~~a~~lle~g~~~l~qG~~e~A~~L~~eAL~i~eqV~G~~HpevA~~y~~LA~vy~~~Gd~~eAi 190 (222)
+...+...+..|..+..+|++++|.++|.+|+.+. +.+++.+..+.++|.+|..+|++++|+
T Consensus 31 ~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-----~~~~~~~~~~~~la~~~~~~g~~~~A~ 92 (172)
T PRK02603 31 KAKEAFVYYRDGMSAQADGEYAEALENYEEALKLE-----EDPNDRSYILYNMGIIYASNGEHDKAL 92 (172)
T ss_pred HhhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHh-----hccchHHHHHHHHHHHHHHcCCHHHHH
Confidence 44556667888999999999999999999999874 456677889999999999999999999
No 14
>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional
Probab=97.45 E-value=0.00035 Score=66.66 Aligned_cols=69 Identities=13% Similarity=0.090 Sum_probs=59.5
Q ss_pred hhHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHcCChhhHhhchHHhhhhhCCCCc
Q 027539 126 ADGRTLLESSKIALDKGKLEDAVNYGTKALARMIAVCGPYHRTTASTYSLLAVVLYHTGDFNQVRQSSVVFQCQLGDSKS 205 (222)
Q Consensus 126 ~~a~~lle~g~~~l~qG~~e~A~~L~~eAL~i~eqV~G~~HpevA~~y~~LA~vy~~~Gd~~eAi~~~~~~~~~~~~~~~ 205 (222)
.++...++.|..+..+|++++|++.|++||.+ .|.|++...+|+|+|.+|..+|++++|+ ... ++
T Consensus 73 ~~a~a~~NLG~AL~~lGryeEAIa~f~rALeL-----~Pd~aeA~~A~yNLAcaya~LGr~dEAl----a~L------rr 137 (453)
T PLN03098 73 KTAEDAVNLGLSLFSKGRVKDALAQFETALEL-----NPNPDEAQAAYYNKACCHAYREEGKKAA----DCL------RT 137 (453)
T ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh-----CCCchHHHHHHHHHHHHHHHcCCHHHHH----HHH------HH
Confidence 44555666799999999999999999999998 4788888889999999999999999999 666 56
Q ss_pred eEEE
Q 027539 206 SIII 209 (222)
Q Consensus 206 a~~i 209 (222)
|+.+
T Consensus 138 ALel 141 (453)
T PLN03098 138 ALRD 141 (453)
T ss_pred HHHh
Confidence 7665
No 15
>KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=97.39 E-value=0.00022 Score=70.47 Aligned_cols=62 Identities=23% Similarity=0.277 Sum_probs=49.0
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHcCChhhHhhchHHhhhhhCCCCceEEEe
Q 027539 131 LLESSKIALDKGKLEDAVNYGTKALARMIAVCGPYHRTTASTYSLLAVVLYHTGDFNQVRQSSVVFQCQLGDSKSSIIIT 210 (222)
Q Consensus 131 lle~g~~~l~qG~~e~A~~L~~eAL~i~eqV~G~~HpevA~~y~~LA~vy~~~Gd~~eAi~~~~~~~~~~~~~~~a~~i~ 210 (222)
+.+.|.++..+|+.++|..||..|+.+ .|+-|...+|||.+|.++|.+++|+ .+| |.|+.|.
T Consensus 357 m~NLgni~~E~~~~e~A~~ly~~al~v--------~p~~aaa~nNLa~i~kqqgnl~~Ai----~~Y------kealrI~ 418 (966)
T KOG4626|consen 357 MNNLGNIYREQGKIEEATRLYLKALEV--------FPEFAAAHNNLASIYKQQGNLDDAI----MCY------KEALRIK 418 (966)
T ss_pred HHHHHHHHHHhccchHHHHHHHHHHhh--------ChhhhhhhhhHHHHHHhcccHHHHH----HHH------HHHHhcC
Confidence 333477777777777777777777754 5899999999999999999999999 777 7777765
No 16
>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF. Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.
Probab=97.31 E-value=0.0006 Score=50.60 Aligned_cols=57 Identities=16% Similarity=0.258 Sum_probs=43.5
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHcCChhhHh
Q 027539 129 RTLLESSKIALDKGKLEDAVNYGTKALARMIAVCGPYHRTTASTYSLLAVVLYHTGDFNQVR 190 (222)
Q Consensus 129 ~~lle~g~~~l~qG~~e~A~~L~~eAL~i~eqV~G~~HpevA~~y~~LA~vy~~~Gd~~eAi 190 (222)
+..+..|..+..+|++++|.+.|.+++.. .|.++..+.++..+|.+++..|++++|+
T Consensus 3 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~-----~~~~~~~~~~~~~l~~~~~~~~~~~~A~ 59 (119)
T TIGR02795 3 EAYYDAALLVLKAGDYADAIQAFQAFLKK-----YPKSTYAPNAHYWLGEAYYAQGKYADAA 59 (119)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHH-----CCCccccHHHHHHHHHHHHhhccHHHHH
Confidence 45677788888888888888888877754 3556666777888888888888888887
No 17
>PRK15359 type III secretion system chaperone protein SscB; Provisional
Probab=97.22 E-value=0.0004 Score=55.84 Aligned_cols=58 Identities=16% Similarity=0.040 Sum_probs=46.8
Q ss_pred cCchhHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHcCChhhHh
Q 027539 123 CTSADGRTLLESSKIALDKGKLEDAVNYGTKALARMIAVCGPYHRTTASTYSLLAVVLYHTGDFNQVR 190 (222)
Q Consensus 123 p~s~~a~~lle~g~~~l~qG~~e~A~~L~~eAL~i~eqV~G~~HpevA~~y~~LA~vy~~~Gd~~eAi 190 (222)
|....+ ....|.++...|++++|.+.|.+|+.+ .|+-+..+.++|.++..+|++++|+
T Consensus 55 P~~~~a--~~~lg~~~~~~g~~~~A~~~y~~Al~l--------~p~~~~a~~~lg~~l~~~g~~~eAi 112 (144)
T PRK15359 55 PWSWRA--HIALAGTWMMLKEYTTAINFYGHALML--------DASHPEPVYQTGVCLKMMGEPGLAR 112 (144)
T ss_pred CCcHHH--HHHHHHHHHHHhhHHHHHHHHHHHHhc--------CCCCcHHHHHHHHHHHHcCCHHHHH
Confidence 444444 455688999999999988888888864 5777888999999999999999999
No 18
>CHL00033 ycf3 photosystem I assembly protein Ycf3
Probab=97.22 E-value=0.00021 Score=58.14 Aligned_cols=76 Identities=14% Similarity=0.059 Sum_probs=53.1
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHcCChhhHhhchHHhhhhhCCCCceEE
Q 027539 129 RTLLESSKIALDKGKLEDAVNYGTKALARMIAVCGPYHRTTASTYSLLAVVLYHTGDFNQVRQSSVVFQCQLGDSKSSII 208 (222)
Q Consensus 129 ~~lle~g~~~l~qG~~e~A~~L~~eAL~i~eqV~G~~HpevA~~y~~LA~vy~~~Gd~~eAi~~~~~~~~~~~~~~~a~~ 208 (222)
......|.++..+|++++|+.++.+|+.+. .-++..|..++.+|.++++++..+|++++|+ .+. ++|+.
T Consensus 73 ~~~~~lg~~~~~~g~~~eA~~~~~~Al~~~-~~~~~~~~~la~i~~~~~~~~~~~g~~~~A~----~~~------~~a~~ 141 (168)
T CHL00033 73 YILYNIGLIHTSNGEHTKALEYYFQALERN-PFLPQALNNMAVICHYRGEQAIEQGDSEIAE----AWF------DQAAE 141 (168)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cCcHHHHHHHHHHHHHhhHHHHHcccHHHHH----HHH------HHHHH
Confidence 345667999999999999999999999873 2233445555555555555555999999888 444 45655
Q ss_pred Eeeeech
Q 027539 209 ITSFCTE 215 (222)
Q Consensus 209 i~e~~~~ 215 (222)
+.++..+
T Consensus 142 ~~~~a~~ 148 (168)
T CHL00033 142 YWKQAIA 148 (168)
T ss_pred HHHHHHH
Confidence 5555443
No 19
>KOG0553 consensus TPR repeat-containing protein [General function prediction only]
Probab=97.21 E-value=0.00072 Score=61.45 Aligned_cols=77 Identities=14% Similarity=0.175 Sum_probs=65.4
Q ss_pred CchhHHHHHHHHHHHHhcCChHHHHHHHHHHHHHH----------HHHhC----------------CCChHHHHHHHHHH
Q 027539 124 TSADGRTLLESSKIALDKGKLEDAVNYGTKALARM----------IAVCG----------------PYHRTTASTYSLLA 177 (222)
Q Consensus 124 ~s~~a~~lle~g~~~l~qG~~e~A~~L~~eAL~i~----------eqV~G----------------~~HpevA~~y~~LA 177 (222)
....|+.+=..|.-.+..++|++|+..|++|+.+- -++|- .+.|.-.++|..|+
T Consensus 77 ~~~~AE~LK~eGN~~m~~~~Y~eAv~kY~~AI~l~P~nAVyycNRAAAy~~Lg~~~~AVkDce~Al~iDp~yskay~RLG 156 (304)
T KOG0553|consen 77 DKALAESLKNEGNKLMKNKDYQEAVDKYTEAIELDPTNAVYYCNRAAAYSKLGEYEDAVKDCESALSIDPHYSKAYGRLG 156 (304)
T ss_pred HHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCCcchHHHHHHHHHHHhcchHHHHHHHHHHHhcChHHHHHHHHHH
Confidence 34789999999999999999999999999999853 23443 34588889999999
Q ss_pred HHHHHcCChhhHhhchHHhhhhhCCCCceEEEe
Q 027539 178 VVLYHTGDFNQVRQSSVVFQCQLGDSKSSIIIT 210 (222)
Q Consensus 178 ~vy~~~Gd~~eAi~~~~~~~~~~~~~~~a~~i~ 210 (222)
++|+.+|++++|+ +.| |+||.|.
T Consensus 157 ~A~~~~gk~~~A~----~ay------kKaLeld 179 (304)
T KOG0553|consen 157 LAYLALGKYEEAI----EAY------KKALELD 179 (304)
T ss_pred HHHHccCcHHHHH----HHH------HhhhccC
Confidence 9999999999999 888 8898773
No 20
>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW. Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.
Probab=97.14 E-value=0.0013 Score=52.92 Aligned_cols=58 Identities=21% Similarity=0.232 Sum_probs=47.4
Q ss_pred chhHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHcCChhhHh
Q 027539 125 SADGRTLLESSKIALDKGKLEDAVNYGTKALARMIAVCGPYHRTTASTYSLLAVVLYHTGDFNQVR 190 (222)
Q Consensus 125 s~~a~~lle~g~~~l~qG~~e~A~~L~~eAL~i~eqV~G~~HpevA~~y~~LA~vy~~~Gd~~eAi 190 (222)
...+......|..+..+|++++|.+.+.+++.. +|+.+..+..+|.+|..+|++++|+
T Consensus 28 ~~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~--------~p~~~~~~~~la~~~~~~~~~~~A~ 85 (234)
T TIGR02521 28 NKAAKIRVQLALGYLEQGDLEVAKENLDKALEH--------DPDDYLAYLALALYYQQLGELEKAE 85 (234)
T ss_pred CcHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--------CcccHHHHHHHHHHHHHcCCHHHHH
Confidence 344566677799999999999999999988764 5677788888999999999988887
No 21
>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A.
Probab=97.10 E-value=0.00061 Score=49.30 Aligned_cols=55 Identities=22% Similarity=0.323 Sum_probs=42.9
Q ss_pred hHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHcCChhhHh
Q 027539 127 DGRTLLESSKIALDKGKLEDAVNYGTKALARMIAVCGPYHRTTASTYSLLAVVLYHTGDFNQVR 190 (222)
Q Consensus 127 ~a~~lle~g~~~l~qG~~e~A~~L~~eAL~i~eqV~G~~HpevA~~y~~LA~vy~~~Gd~~eAi 190 (222)
+..-.+..|+++..+|++++|++++.+ + ...|....+...+|++++++|++++|+
T Consensus 24 ~~~~~~~la~~~~~~~~y~~A~~~~~~-~--------~~~~~~~~~~~l~a~~~~~l~~y~eAi 78 (84)
T PF12895_consen 24 NSAYLYNLAQCYFQQGKYEEAIELLQK-L--------KLDPSNPDIHYLLARCLLKLGKYEEAI 78 (84)
T ss_dssp HHHHHHHHHHHHHHTTHHHHHHHHHHC-H--------THHHCHHHHHHHHHHHHHHTT-HHHHH
T ss_pred hHHHHHHHHHHHHHCCCHHHHHHHHHH-h--------CCCCCCHHHHHHHHHHHHHhCCHHHHH
Confidence 555667789999999999999998888 1 223333566667899999999999999
No 22
>PF13371 TPR_9: Tetratricopeptide repeat
Probab=97.02 E-value=0.00081 Score=46.80 Aligned_cols=48 Identities=19% Similarity=0.282 Sum_probs=44.9
Q ss_pred HHHHHhcCChHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHcCChhhHh
Q 027539 135 SKIALDKGKLEDAVNYGTKALARMIAVCGPYHRTTASTYSLLAVVLYHTGDFNQVR 190 (222)
Q Consensus 135 g~~~l~qG~~e~A~~L~~eAL~i~eqV~G~~HpevA~~y~~LA~vy~~~Gd~~eAi 190 (222)
.++++.++++++|.+.+.+++.+ +|+-...+...|.+|+.+|++.+|+
T Consensus 2 ~~~~~~~~~~~~A~~~~~~~l~~--------~p~~~~~~~~~a~~~~~~g~~~~A~ 49 (73)
T PF13371_consen 2 KQIYLQQEDYEEALEVLERALEL--------DPDDPELWLQRARCLFQLGRYEEAL 49 (73)
T ss_pred HHHHHhCCCHHHHHHHHHHHHHh--------CcccchhhHHHHHHHHHhccHHHHH
Confidence 46789999999999999999987 8889999999999999999999999
No 23
>KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=97.00 E-value=0.00067 Score=67.21 Aligned_cols=70 Identities=24% Similarity=0.180 Sum_probs=54.6
Q ss_pred ccccCchhHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHcCChhhHhhchHHhhhh
Q 027539 120 HVGCTSADGRTLLESSKIALDKGKLEDAVNYGTKALARMIAVCGPYHRTTASTYSLLAVVLYHTGDFNQVRQSSVVFQCQ 199 (222)
Q Consensus 120 ~~~p~s~~a~~lle~g~~~l~qG~~e~A~~L~~eAL~i~eqV~G~~HpevA~~y~~LA~vy~~~Gd~~eAi~~~~~~~~~ 199 (222)
+..|..+.|.+.+ |-++-+||++++|++.|+|||.| -|.-|.+|+|++.+|-.+||..+|+ ..+
T Consensus 382 ~v~p~~aaa~nNL--a~i~kqqgnl~~Ai~~YkealrI--------~P~fAda~~NmGnt~ke~g~v~~A~----q~y-- 445 (966)
T KOG4626|consen 382 EVFPEFAAAHNNL--ASIYKQQGNLDDAIMCYKEALRI--------KPTFADALSNMGNTYKEMGDVSAAI----QCY-- 445 (966)
T ss_pred hhChhhhhhhhhH--HHHHHhcccHHHHHHHHHHHHhc--------CchHHHHHHhcchHHHHhhhHHHHH----HHH--
Confidence 4445555555555 89999999999999999999965 6888888888888888888888888 555
Q ss_pred hCCCCceEEE
Q 027539 200 LGDSKSSIII 209 (222)
Q Consensus 200 ~~~~~~a~~i 209 (222)
.+|+.|
T Consensus 446 ----~rAI~~ 451 (966)
T KOG4626|consen 446 ----TRAIQI 451 (966)
T ss_pred ----HHHHhc
Confidence 566554
No 24
>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF. Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.
Probab=96.97 E-value=0.0019 Score=47.89 Aligned_cols=58 Identities=16% Similarity=0.157 Sum_probs=51.5
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHcCChhhHhh
Q 027539 129 RTLLESSKIALDKGKLEDAVNYGTKALARMIAVCGPYHRTTASTYSLLAVVLYHTGDFNQVRQ 191 (222)
Q Consensus 129 ~~lle~g~~~l~qG~~e~A~~L~~eAL~i~eqV~G~~HpevA~~y~~LA~vy~~~Gd~~eAi~ 191 (222)
.-.+..|.++...|++++|..+|.+++..+ |.||.+..++..+|.++.++|++++|+.
T Consensus 40 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-----p~~~~~~~~~~~~~~~~~~~~~~~~A~~ 97 (119)
T TIGR02795 40 NAHYWLGEAYYAQGKYADAAKAFLAVVKKY-----PKSPKAPDALLKLGMSLQELGDKEKAKA 97 (119)
T ss_pred HHHHHHHHHHHhhccHHHHHHHHHHHHHHC-----CCCCcccHHHHHHHHHHHHhCChHHHHH
Confidence 345667999999999999999999999754 7888888999999999999999999993
No 25
>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A ....
Probab=96.96 E-value=0.0016 Score=44.68 Aligned_cols=44 Identities=25% Similarity=0.448 Sum_probs=38.2
Q ss_pred HhcCChHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHcCChhhHh
Q 027539 139 LDKGKLEDAVNYGTKALARMIAVCGPYHRTTASTYSLLAVVLYHTGDFNQVR 190 (222)
Q Consensus 139 l~qG~~e~A~~L~~eAL~i~eqV~G~~HpevA~~y~~LA~vy~~~Gd~~eAi 190 (222)
+.+|++++|+++|++++.. +|+-......||.+|..+|++++|.
T Consensus 2 l~~~~~~~A~~~~~~~l~~--------~p~~~~~~~~la~~~~~~g~~~~A~ 45 (68)
T PF14559_consen 2 LKQGDYDEAIELLEKALQR--------NPDNPEARLLLAQCYLKQGQYDEAE 45 (68)
T ss_dssp HHTTHHHHHHHHHHHHHHH--------TTTSHHHHHHHHHHHHHTT-HHHHH
T ss_pred hhccCHHHHHHHHHHHHHH--------CCCCHHHHHHHHHHHHHcCCHHHHH
Confidence 6789999999999999876 6767777789999999999999999
No 26
>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function.
Probab=96.95 E-value=0.0018 Score=51.69 Aligned_cols=65 Identities=23% Similarity=0.229 Sum_probs=48.8
Q ss_pred cccCchh-HHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHcCChhhHh
Q 027539 121 VGCTSAD-GRTLLESSKIALDKGKLEDAVNYGTKALARMIAVCGPYHRTTASTYSLLAVVLYHTGDFNQVR 190 (222)
Q Consensus 121 ~~p~s~~-a~~lle~g~~~l~qG~~e~A~~L~~eAL~i~eqV~G~~HpevA~~y~~LA~vy~~~Gd~~eAi 190 (222)
..|.++. ....+..|+.+..+|++++|.+.|.+++.- ++..+-...+...||.++..+|++++|+
T Consensus 40 ~~~~s~ya~~A~l~lA~~~~~~g~~~~A~~~l~~~~~~-----~~d~~l~~~a~l~LA~~~~~~~~~d~Al 105 (145)
T PF09976_consen 40 DYPSSPYAALAALQLAKAAYEQGDYDEAKAALEKALAN-----APDPELKPLARLRLARILLQQGQYDEAL 105 (145)
T ss_pred HCCCChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhh-----CCCHHHHHHHHHHHHHHHHHcCCHHHHH
Confidence 3455533 355677899999999999999998887762 2444445566778999999999999998
No 27
>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A.
Probab=96.89 E-value=0.0065 Score=51.45 Aligned_cols=73 Identities=22% Similarity=0.313 Sum_probs=58.4
Q ss_pred hHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHcCChhhHhhchHHhhhhhCCCC
Q 027539 127 DGRTLLESSKIALDKGKLEDAVNYGTKALARMIAVCGPYHRTTASTYSLLAVVLYHTGDFNQVRQSSVVFQCQLGDSK 204 (222)
Q Consensus 127 ~a~~lle~g~~~l~qG~~e~A~~L~~eAL~i~eqV~G~~HpevA~~y~~LA~vy~~~Gd~~eAi~~~~~~~~~~~~~~ 204 (222)
+++.+++.|...+++|++++|.++|.+...-+ |.+|-+..+...+|..|+.+|++++|+..-..|.....++.
T Consensus 4 ~~~~lY~~a~~~~~~g~y~~Ai~~f~~l~~~~-----P~s~~a~~A~l~la~a~y~~~~y~~A~~~~~~fi~~yP~~~ 76 (203)
T PF13525_consen 4 TAEALYQKALEALQQGDYEEAIKLFEKLIDRY-----PNSPYAPQAQLMLAYAYYKQGDYEEAIAAYERFIKLYPNSP 76 (203)
T ss_dssp -HHHHHHHHHHHHHCT-HHHHHHHHHHHHHH------TTSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH-TT-T
T ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHC-----CCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCc
Confidence 57889999999999999999999998887664 88999999999999999999999999966666654444443
No 28
>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional
Probab=96.84 E-value=0.002 Score=59.41 Aligned_cols=54 Identities=13% Similarity=0.236 Sum_probs=44.9
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHcCChhhHh
Q 027539 129 RTLLESSKIALDKGKLEDAVNYGTKALARMIAVCGPYHRTTASTYSLLAVVLYHTGDFNQVR 190 (222)
Q Consensus 129 ~~lle~g~~~l~qG~~e~A~~L~~eAL~i~eqV~G~~HpevA~~y~~LA~vy~~~Gd~~eAi 190 (222)
.-.+..|.+++..|++++|+..+.+|+.+ .|+-+.+|..+|.+|+.+|++++|+
T Consensus 37 ~a~~~~a~~~~~~g~~~eAl~~~~~Al~l--------~P~~~~a~~~lg~~~~~lg~~~eA~ 90 (356)
T PLN03088 37 ELYADRAQANIKLGNFTEAVADANKAIEL--------DPSLAKAYLRKGTACMKLEEYQTAK 90 (356)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHh--------CcCCHHHHHHHHHHHHHhCCHHHHH
Confidence 34566788899999999999999988886 4566678899999999999999999
No 29
>PRK15359 type III secretion system chaperone protein SscB; Provisional
Probab=96.83 E-value=0.0019 Score=51.89 Aligned_cols=52 Identities=12% Similarity=-0.012 Sum_probs=47.0
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHcCChhhHh
Q 027539 131 LLESSKIALDKGKLEDAVNYGTKALARMIAVCGPYHRTTASTYSLLAVVLYHTGDFNQVR 190 (222)
Q Consensus 131 lle~g~~~l~qG~~e~A~~L~~eAL~i~eqV~G~~HpevA~~y~~LA~vy~~~Gd~~eAi 190 (222)
.+..|.++.++|++++|.+.|.+++.+ .|+-...+.++|.++..+|++++|+
T Consensus 27 ~~~~g~~~~~~g~~~~A~~~~~~al~~--------~P~~~~a~~~lg~~~~~~g~~~~A~ 78 (144)
T PRK15359 27 VYASGYASWQEGDYSRAVIDFSWLVMA--------QPWSWRAHIALAGTWMMLKEYTTAI 78 (144)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHc--------CCCcHHHHHHHHHHHHHHhhHHHHH
Confidence 556799999999999999999998854 6778899999999999999999999
No 30
>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD. ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.
Probab=96.81 E-value=0.0018 Score=49.89 Aligned_cols=52 Identities=17% Similarity=0.067 Sum_probs=39.8
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHcCChhhHh
Q 027539 131 LLESSKIALDKGKLEDAVNYGTKALARMIAVCGPYHRTTASTYSLLAVVLYHTGDFNQVR 190 (222)
Q Consensus 131 lle~g~~~l~qG~~e~A~~L~~eAL~i~eqV~G~~HpevA~~y~~LA~vy~~~Gd~~eAi 190 (222)
....|..+..+|++++|.+.+.+++.+ +|+....+.++|.+|..+|++++|+
T Consensus 54 ~~~la~~~~~~~~~~~A~~~~~~~~~~--------~p~~~~~~~~la~~~~~~g~~~~A~ 105 (135)
T TIGR02552 54 WLGLAACCQMLKEYEEAIDAYALAAAL--------DPDDPRPYFHAAECLLALGEPESAL 105 (135)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhc--------CCCChHHHHHHHHHHHHcCCHHHHH
Confidence 334577777788888777777777663 5777778888888888888888888
No 31
>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO. Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).
Probab=96.80 E-value=0.0063 Score=51.43 Aligned_cols=55 Identities=16% Similarity=0.176 Sum_probs=49.5
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHcCChhhHhh
Q 027539 132 LESSKIALDKGKLEDAVNYGTKALARMIAVCGPYHRTTASTYSLLAVVLYHTGDFNQVRQ 191 (222)
Q Consensus 132 le~g~~~l~qG~~e~A~~L~~eAL~i~eqV~G~~HpevA~~y~~LA~vy~~~Gd~~eAi~ 191 (222)
++.|..++.+|++++|...|.+++..+ |.+|..+..+..++.+|..+|++++|+.
T Consensus 170 ~~~a~~~~~~g~~~~A~~~~~~al~~~-----p~~~~~~~a~~~l~~~~~~lg~~~~A~~ 224 (235)
T TIGR03302 170 LYVARFYLKRGAYVAAINRFETVVENY-----PDTPATEEALARLVEAYLKLGLKDLAQD 224 (235)
T ss_pred HHHHHHHHHcCChHHHHHHHHHHHHHC-----CCCcchHHHHHHHHHHHHHcCCHHHHHH
Confidence 367889999999999999999999875 4479999999999999999999999993
No 32
>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD. ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.
Probab=96.74 E-value=0.0026 Score=48.95 Aligned_cols=55 Identities=9% Similarity=0.045 Sum_probs=48.2
Q ss_pred HHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHcCChhhHh
Q 027539 128 GRTLLESSKIALDKGKLEDAVNYGTKALARMIAVCGPYHRTTASTYSLLAVVLYHTGDFNQVR 190 (222)
Q Consensus 128 a~~lle~g~~~l~qG~~e~A~~L~~eAL~i~eqV~G~~HpevA~~y~~LA~vy~~~Gd~~eAi 190 (222)
+...+..|..++.+|++++|.+++.+++.+ +|+....+..+|.+|+.+|++++|+
T Consensus 17 ~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~--------~p~~~~~~~~la~~~~~~~~~~~A~ 71 (135)
T TIGR02552 17 LEQIYALAYNLYQQGRYDEALKLFQLLAAY--------DPYNSRYWLGLAACCQMLKEYEEAI 71 (135)
T ss_pred HHHHHHHHHHHHHcccHHHHHHHHHHHHHh--------CCCcHHHHHHHHHHHHHHHHHHHHH
Confidence 455777899999999999999999888764 5667788999999999999999999
No 33
>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional
Probab=96.72 E-value=0.0024 Score=58.93 Aligned_cols=55 Identities=22% Similarity=0.228 Sum_probs=49.2
Q ss_pred HHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHcCChhhHh
Q 027539 128 GRTLLESSKIALDKGKLEDAVNYGTKALARMIAVCGPYHRTTASTYSLLAVVLYHTGDFNQVR 190 (222)
Q Consensus 128 a~~lle~g~~~l~qG~~e~A~~L~~eAL~i~eqV~G~~HpevA~~y~~LA~vy~~~Gd~~eAi 190 (222)
+.+++..|+....+|++++|+++|.+|+.+ .|+-+.+|.++|.+|..+|++++|+
T Consensus 2 ~~~l~~~a~~a~~~~~~~~Ai~~~~~Al~~--------~P~~~~a~~~~a~~~~~~g~~~eAl 56 (356)
T PLN03088 2 AKDLEDKAKEAFVDDDFALAVDLYTQAIDL--------DPNNAELYADRAQANIKLGNFTEAV 56 (356)
T ss_pred cHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--------CCCCHHHHHHHHHHHHHcCCHHHHH
Confidence 356888999999999999999999999974 5556778999999999999999999
No 34
>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A.
Probab=96.70 E-value=0.0054 Score=54.46 Aligned_cols=65 Identities=20% Similarity=0.177 Sum_probs=54.8
Q ss_pred CchhHHHHHHHHHHHHhc-CChHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHcCChhhHh
Q 027539 124 TSADGRTLLESSKIALDK-GKLEDAVNYGTKALARMIAVCGPYHRTTASTYSLLAVVLYHTGDFNQVR 190 (222)
Q Consensus 124 ~s~~a~~lle~g~~~l~q-G~~e~A~~L~~eAL~i~eqV~G~~HpevA~~y~~LA~vy~~~Gd~~eAi 190 (222)
...-|+-+.+.|+++..+ |++++|+++|.+|+.+|++-- .......|+..+|.++..+|+|++|+
T Consensus 110 ~~~aA~~~~~lA~~ye~~~~d~e~Ai~~Y~~A~~~y~~e~--~~~~a~~~~~~~A~l~~~l~~y~~A~ 175 (282)
T PF14938_consen 110 FSQAAKCLKELAEIYEEQLGDYEKAIEYYQKAAELYEQEG--SPHSAAECLLKAADLYARLGRYEEAI 175 (282)
T ss_dssp HHHHHHHHHHHHHHHCCTT--HHHHHHHHHHHHHHHHHTT---HHHHHHHHHHHHHHHHHTT-HHHHH
T ss_pred HHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCC--ChhhHHHHHHHHHHHHHHhCCHHHHH
Confidence 345577788889999999 999999999999999999854 56778999999999999999999999
No 35
>PRK11189 lipoprotein NlpI; Provisional
Probab=96.69 E-value=0.0031 Score=56.33 Aligned_cols=56 Identities=23% Similarity=0.225 Sum_probs=49.1
Q ss_pred hHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHcCChhhHh
Q 027539 127 DGRTLLESSKIALDKGKLEDAVNYGTKALARMIAVCGPYHRTTASTYSLLAVVLYHTGDFNQVR 190 (222)
Q Consensus 127 ~a~~lle~g~~~l~qG~~e~A~~L~~eAL~i~eqV~G~~HpevA~~y~~LA~vy~~~Gd~~eAi 190 (222)
.+.-.++.|.++...|+.++|...|.+|+.+ .|+-+..|+++|.+|..+|++++|+
T Consensus 63 ~a~~~~~~g~~~~~~g~~~~A~~~~~~Al~l--------~P~~~~a~~~lg~~~~~~g~~~~A~ 118 (296)
T PRK11189 63 RAQLHYERGVLYDSLGLRALARNDFSQALAL--------RPDMADAYNYLGIYLTQAGNFDAAY 118 (296)
T ss_pred hHHHHHHHHHHHHHCCCHHHHHHHHHHHHHc--------CCCCHHHHHHHHHHHHHCCCHHHHH
Confidence 3566888899999999999999999999984 5667788999999999999999998
No 36
>PF12688 TPR_5: Tetratrico peptide repeat
Probab=96.66 E-value=0.0083 Score=47.57 Aligned_cols=57 Identities=23% Similarity=0.229 Sum_probs=50.0
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHcCChhhHhh
Q 027539 130 TLLESSKIALDKGKLEDAVNYGTKALARMIAVCGPYHRTTASTYSLLAVVLYHTGDFNQVRQ 191 (222)
Q Consensus 130 ~lle~g~~~l~qG~~e~A~~L~~eAL~i~eqV~G~~HpevA~~y~~LA~vy~~~Gd~~eAi~ 191 (222)
-.++.|-++-..|+.++|+++|.+|+. .|..-++-..++-.||..|..+|++++|+.
T Consensus 3 ~~~~~A~a~d~~G~~~~Ai~~Y~~Al~-----~gL~~~~~~~a~i~lastlr~LG~~deA~~ 59 (120)
T PF12688_consen 3 ALYELAWAHDSLGREEEAIPLYRRALA-----AGLSGADRRRALIQLASTLRNLGRYDEALA 59 (120)
T ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHH-----cCCCchHHHHHHHHHHHHHHHcCCHHHHHH
Confidence 467889999999999999999999987 477777788899999999999999999993
No 37
>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO. Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).
Probab=96.64 E-value=0.0064 Score=51.39 Aligned_cols=65 Identities=25% Similarity=0.361 Sum_probs=56.2
Q ss_pred chhHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHcCChhhHhhchH
Q 027539 125 SADGRTLLESSKIALDKGKLEDAVNYGTKALARMIAVCGPYHRTTASTYSLLAVVLYHTGDFNQVRQSSV 194 (222)
Q Consensus 125 s~~a~~lle~g~~~l~qG~~e~A~~L~~eAL~i~eqV~G~~HpevA~~y~~LA~vy~~~Gd~~eAi~~~~ 194 (222)
.-.+...++.|..++..|++++|.+.+.+++..+ |.+|.....+..+|.+|+.+|++++|+....
T Consensus 30 ~~~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~-----p~~~~~~~a~~~la~~~~~~~~~~~A~~~~~ 94 (235)
T TIGR03302 30 EWPAEELYEEAKEALDSGDYTEAIKYFEALESRY-----PFSPYAEQAQLDLAYAYYKSGDYAEAIAAAD 94 (235)
T ss_pred cCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-----CCchhHHHHHHHHHHHHHhcCCHHHHHHHHH
Confidence 3456678999999999999999999999988765 7788888899999999999999999994333
No 38
>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional
Probab=96.61 E-value=0.0059 Score=51.81 Aligned_cols=63 Identities=17% Similarity=0.145 Sum_probs=47.4
Q ss_pred HHHHHHHHHHHHhcCChHHHHHHHHHHHHHH----------HHH----hCCC---------------ChHHHHHHHHHHH
Q 027539 128 GRTLLESSKIALDKGKLEDAVNYGTKALARM----------IAV----CGPY---------------HRTTASTYSLLAV 178 (222)
Q Consensus 128 a~~lle~g~~~l~qG~~e~A~~L~~eAL~i~----------eqV----~G~~---------------HpevA~~y~~LA~ 178 (222)
++..+..|+.+...|++++|.+.|.+|+.+. -.+ .|.. +|+-..++++||.
T Consensus 73 ~~~w~~Lg~~~~~~g~~~~A~~a~~~Al~l~P~~~~~~~~lA~aL~~~~g~~~~~~A~~~l~~al~~dP~~~~al~~LA~ 152 (198)
T PRK10370 73 SEQWALLGEYYLWRNDYDNALLAYRQALQLRGENAELYAALATVLYYQAGQHMTPQTREMIDKALALDANEVTALMLLAS 152 (198)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhCCCChhHHHHHHH
Confidence 3344555999999999999999999888721 122 1442 6777788888888
Q ss_pred HHHHcCChhhHh
Q 027539 179 VLYHTGDFNQVR 190 (222)
Q Consensus 179 vy~~~Gd~~eAi 190 (222)
.++.+|++++|+
T Consensus 153 ~~~~~g~~~~Ai 164 (198)
T PRK10370 153 DAFMQADYAQAI 164 (198)
T ss_pred HHHHcCCHHHHH
Confidence 888888888888
No 39
>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW. Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.
Probab=96.54 E-value=0.0066 Score=48.78 Aligned_cols=51 Identities=20% Similarity=0.222 Sum_probs=31.7
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHcCChhhHh
Q 027539 132 LESSKIALDKGKLEDAVNYGTKALARMIAVCGPYHRTTASTYSLLAVVLYHTGDFNQVR 190 (222)
Q Consensus 132 le~g~~~l~qG~~e~A~~L~~eAL~i~eqV~G~~HpevA~~y~~LA~vy~~~Gd~~eAi 190 (222)
...|.++..+|++++|.+++.+++.+ +|.....+.+++.+|..+|++++|+
T Consensus 69 ~~la~~~~~~~~~~~A~~~~~~al~~--------~~~~~~~~~~~~~~~~~~g~~~~A~ 119 (234)
T TIGR02521 69 LALALYYQQLGELEKAEDSFRRALTL--------NPNNGDVLNNYGTFLCQQGKYEQAM 119 (234)
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhh--------CCCCHHHHHHHHHHHHHcccHHHHH
Confidence 33467777777777777777777654 2333345666666666666666666
No 40
>PRK10866 outer membrane biogenesis protein BamD; Provisional
Probab=96.50 E-value=0.019 Score=50.41 Aligned_cols=73 Identities=12% Similarity=0.118 Sum_probs=59.6
Q ss_pred chhHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHcCChhhHhhchHHhhhhhCC
Q 027539 125 SADGRTLLESSKIALDKGKLEDAVNYGTKALARMIAVCGPYHRTTASTYSLLAVVLYHTGDFNQVRQSSVVFQCQLGD 202 (222)
Q Consensus 125 s~~a~~lle~g~~~l~qG~~e~A~~L~~eAL~i~eqV~G~~HpevA~~y~~LA~vy~~~Gd~~eAi~~~~~~~~~~~~ 202 (222)
+.++.+.++.|...+.+|++++|.++|.+.+..+ |.-|........||.+|+.+|++++|+.....|-....+
T Consensus 29 ~~~~~~~Y~~A~~~~~~g~y~~Ai~~f~~l~~~y-----P~s~~a~~a~l~la~ayy~~~~y~~A~~~~e~fi~~~P~ 101 (243)
T PRK10866 29 DNPPSEIYATAQQKLQDGNWKQAITQLEALDNRY-----PFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPT 101 (243)
T ss_pred CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-----CCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCcC
Confidence 4678889999999999999999999999988754 455788888899999999999999999555444433333
No 41
>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C
Probab=96.47 E-value=0.0042 Score=41.63 Aligned_cols=52 Identities=27% Similarity=0.440 Sum_probs=40.7
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHcCChhhHh
Q 027539 131 LLESSKIALDKGKLEDAVNYGTKALARMIAVCGPYHRTTASTYSLLAVVLYHTGDFNQVR 190 (222)
Q Consensus 131 lle~g~~~l~qG~~e~A~~L~~eAL~i~eqV~G~~HpevA~~y~~LA~vy~~~Gd~~eAi 190 (222)
.+..|..+..+|++++|...+.+++.+. |.++ ..+..+|.+|...|++++|+
T Consensus 3 ~~~~a~~~~~~~~~~~A~~~~~~~~~~~-----~~~~---~~~~~~~~~~~~~~~~~~a~ 54 (100)
T cd00189 3 LLNLGNLYYKLGDYDEALEYYEKALELD-----PDNA---DAYYNLAAAYYKLGKYEEAL 54 (100)
T ss_pred HHHHHHHHHHHhcHHHHHHHHHHHHhcC-----CccH---HHHHHHHHHHHHHHHHHHHH
Confidence 4566888888999999988888887652 2233 67788899999999998888
No 42
>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70).
Probab=96.42 E-value=0.0036 Score=61.07 Aligned_cols=55 Identities=22% Similarity=0.204 Sum_probs=47.8
Q ss_pred hHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHcCChhhHh
Q 027539 127 DGRTLLESSKIALDKGKLEDAVNYGTKALARMIAVCGPYHRTTASTYSLLAVVLYHTGDFNQVR 190 (222)
Q Consensus 127 ~a~~lle~g~~~l~qG~~e~A~~L~~eAL~i~eqV~G~~HpevA~~y~~LA~vy~~~Gd~~eAi 190 (222)
.|..+.+.|..+..+|++++|++.|++|+.+. |+ ...|.++|.+|..+|++++|+
T Consensus 126 ~a~~~k~~G~~~~~~~~~~~Ai~~y~~al~~~--------p~-~~~~~n~a~~~~~l~~~~~Ai 180 (615)
T TIGR00990 126 YAAKLKEKGNKAYRNKDFNKAIKLYSKAIECK--------PD-PVYYSNRAACHNALGDWEKVV 180 (615)
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC--------Cc-hHHHHHHHHHHHHhCCHHHHH
Confidence 36678889999999999999999999999764 33 347999999999999999999
No 43
>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A.
Probab=96.42 E-value=0.00078 Score=41.89 Aligned_cols=29 Identities=10% Similarity=0.339 Sum_probs=24.1
Q ss_pred HHHHHHHHHHHcCChhhHhhchHHhhhhhCCCCceEEEe
Q 027539 172 TYSLLAVVLYHTGDFNQVRQSSVVFQCQLGDSKSSIIIT 210 (222)
Q Consensus 172 ~y~~LA~vy~~~Gd~~eAi~~~~~~~~~~~~~~~a~~i~ 210 (222)
+|++||.+|..+|++++|+ +++ ++|+.+.
T Consensus 1 al~~Lg~~~~~~g~~~~Ai----~~y------~~aL~l~ 29 (36)
T PF13176_consen 1 ALNNLGRIYRQQGDYEKAI----EYY------EQALALA 29 (36)
T ss_dssp HHHHHHHHHHHCT-HHHHH----HHH------HHHHHHH
T ss_pred CHHHHHHHHHHcCCHHHHH----HHH------HHHHHhc
Confidence 6899999999999999999 888 7776554
No 44
>PRK11189 lipoprotein NlpI; Provisional
Probab=96.39 E-value=0.0067 Score=54.21 Aligned_cols=58 Identities=17% Similarity=0.124 Sum_probs=49.0
Q ss_pred cCchhHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHcCChhhHh
Q 027539 123 CTSADGRTLLESSKIALDKGKLEDAVNYGTKALARMIAVCGPYHRTTASTYSLLAVVLYHTGDFNQVR 190 (222)
Q Consensus 123 p~s~~a~~lle~g~~~l~qG~~e~A~~L~~eAL~i~eqV~G~~HpevA~~y~~LA~vy~~~Gd~~eAi 190 (222)
|..+.+. ...|.++...|++++|.+.|.+|+.+ .|+-+..+.++|.+++.+|++++|+
T Consensus 95 P~~~~a~--~~lg~~~~~~g~~~~A~~~~~~Al~l--------~P~~~~a~~~lg~~l~~~g~~~eA~ 152 (296)
T PRK11189 95 PDMADAY--NYLGIYLTQAGNFDAAYEAFDSVLEL--------DPTYNYAYLNRGIALYYGGRYELAQ 152 (296)
T ss_pred CCCHHHH--HHHHHHHHHCCCHHHHHHHHHHHHHh--------CCCCHHHHHHHHHHHHHCCCHHHHH
Confidence 4444554 45599999999999999999999975 4666678999999999999999999
No 45
>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein. This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Probab=96.31 E-value=0.0082 Score=58.01 Aligned_cols=57 Identities=25% Similarity=0.328 Sum_probs=52.1
Q ss_pred hHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHcCChhhHhh
Q 027539 127 DGRTLLESSKIALDKGKLEDAVNYGTKALARMIAVCGPYHRTTASTYSLLAVVLYHTGDFNQVRQ 191 (222)
Q Consensus 127 ~a~~lle~g~~~l~qG~~e~A~~L~~eAL~i~eqV~G~~HpevA~~y~~LA~vy~~~Gd~~eAi~ 191 (222)
.+...+..|+.++.+|++++|...+.+++.+ +|+.+.++..+|.+|..+|++++|+.
T Consensus 21 ~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~--------~p~~~~~~~~l~~~~~~~g~~~~A~~ 77 (899)
T TIGR02917 21 SPESLIEAAKSYLQKNKYKAAIIQLKNALQK--------DPNDAEARFLLGKIYLALGDYAAAEK 77 (899)
T ss_pred CHHHHHHHHHHHHHcCChHhHHHHHHHHHHh--------CCCCHHHHHHHHHHHHHcCCHHHHHH
Confidence 6678899999999999999999999999964 77788899999999999999999993
No 46
>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A.
Probab=96.27 E-value=0.005 Score=54.63 Aligned_cols=60 Identities=18% Similarity=0.247 Sum_probs=45.7
Q ss_pred HHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHc-CChhhHh
Q 027539 128 GRTLLESSKIALDKGKLEDAVNYGTKALARMIAVCGPYHRTTASTYSLLAVVLYHT-GDFNQVR 190 (222)
Q Consensus 128 a~~lle~g~~~l~qG~~e~A~~L~~eAL~i~eqV~G~~HpevA~~y~~LA~vy~~~-Gd~~eAi 190 (222)
|..+.++|.+ ..+++.++|.++|.+|+.+|.+ .......|.++..+|.+|... |++++|+
T Consensus 75 a~~~~~Aa~~-~k~~~~~~Ai~~~~~A~~~y~~--~G~~~~aA~~~~~lA~~ye~~~~d~e~Ai 135 (282)
T PF14938_consen 75 AKAYEEAANC-YKKGDPDEAIECYEKAIEIYRE--AGRFSQAAKCLKELAEIYEEQLGDYEKAI 135 (282)
T ss_dssp HHHHHHHHHH-HHHTTHHHHHHHHHHHHHHHHH--CT-HHHHHHHHHHHHHHHCCTT--HHHHH
T ss_pred HHHHHHHHHH-HHhhCHHHHHHHHHHHHHHHHh--cCcHHHHHHHHHHHHHHHHHHcCCHHHHH
Confidence 4444444555 4566899999999999999964 455677799999999999999 9999999
No 47
>PRK12370 invasion protein regulator; Provisional
Probab=96.26 E-value=0.0084 Score=58.16 Aligned_cols=59 Identities=8% Similarity=-0.082 Sum_probs=47.7
Q ss_pred ccCchhHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHcCChhhHh
Q 027539 122 GCTSADGRTLLESSKIALDKGKLEDAVNYGTKALARMIAVCGPYHRTTASTYSLLAVVLYHTGDFNQVR 190 (222)
Q Consensus 122 ~p~s~~a~~lle~g~~~l~qG~~e~A~~L~~eAL~i~eqV~G~~HpevA~~y~~LA~vy~~~Gd~~eAi 190 (222)
.|..+.+. ...|.++..+|++++|...|.+|+.+ .|+-+..+..+|.+|..+|++++|+
T Consensus 334 dP~~~~a~--~~lg~~~~~~g~~~~A~~~~~~Al~l--------~P~~~~a~~~lg~~l~~~G~~~eAi 392 (553)
T PRK12370 334 DHNNPQAL--GLLGLINTIHSEYIVGSLLFKQANLL--------SPISADIKYYYGWNLFMAGQLEEAL 392 (553)
T ss_pred CCCCHHHH--HHHHHHHHHccCHHHHHHHHHHHHHh--------CCCCHHHHHHHHHHHHHCCCHHHHH
Confidence 34444443 44588999999999999999999985 4555567899999999999999998
No 48
>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function.
Probab=96.11 E-value=0.02 Score=45.57 Aligned_cols=54 Identities=22% Similarity=0.321 Sum_probs=43.9
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHcCChhhHhhchHHhh
Q 027539 131 LLESSKIALDKGKLEDAVNYGTKALARMIAVCGPYHRTTASTYSLLAVVLYHTGDFNQVRQSSVVFQ 197 (222)
Q Consensus 131 lle~g~~~l~qG~~e~A~~L~~eAL~i~eqV~G~~HpevA~~y~~LA~vy~~~Gd~~eAi~~~~~~~ 197 (222)
.+..|++++++|++++|+..+.+ .+..+-.+..+..+|.+|..+|++++|+ ..+
T Consensus 88 ~l~LA~~~~~~~~~d~Al~~L~~---------~~~~~~~~~~~~~~Gdi~~~~g~~~~A~----~~y 141 (145)
T PF09976_consen 88 RLRLARILLQQGQYDEALATLQQ---------IPDEAFKALAAELLGDIYLAQGDYDEAR----AAY 141 (145)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHh---------ccCcchHHHHHHHHHHHHHHCCCHHHHH----HHH
Confidence 45569999999999988887744 2445566778889999999999999999 666
No 49
>PRK02603 photosystem I assembly protein Ycf3; Provisional
Probab=96.08 E-value=0.0049 Score=50.39 Aligned_cols=54 Identities=20% Similarity=0.254 Sum_probs=44.7
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHcCChhhHh
Q 027539 129 RTLLESSKIALDKGKLEDAVNYGTKALARMIAVCGPYHRTTASTYSLLAVVLYHTGDFNQVR 190 (222)
Q Consensus 129 ~~lle~g~~~l~qG~~e~A~~L~~eAL~i~eqV~G~~HpevA~~y~~LA~vy~~~Gd~~eAi 190 (222)
......|.++...|++++|...+.+|+.+ +|+....+..++.+|..+|+...|.
T Consensus 73 ~~~~~la~~~~~~g~~~~A~~~~~~al~~--------~p~~~~~~~~lg~~~~~~g~~~~a~ 126 (172)
T PRK02603 73 YILYNMGIIYASNGEHDKALEYYHQALEL--------NPKQPSALNNIAVIYHKRGEKAEEA 126 (172)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHh--------CcccHHHHHHHHHHHHHcCChHhHh
Confidence 34566799999999999999999999986 6777888889999999988754433
No 50
>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A ....
Probab=96.07 E-value=0.0026 Score=38.23 Aligned_cols=31 Identities=16% Similarity=0.401 Sum_probs=25.6
Q ss_pred HHHHHHHHHHHHHcCChhhHhhchHHhhhhhCCCCceEEEe
Q 027539 170 ASTYSLLAVVLYHTGDFNQVRQSSVVFQCQLGDSKSSIIIT 210 (222)
Q Consensus 170 A~~y~~LA~vy~~~Gd~~eAi~~~~~~~~~~~~~~~a~~i~ 210 (222)
|.+|.++|.+|..+|++++|+ .+. ++|+.|.
T Consensus 1 a~~~~~~g~~~~~~~~~~~A~----~~~------~~al~~~ 31 (34)
T PF00515_consen 1 AEAYYNLGNAYFQLGDYEEAL----EYY------QRALELD 31 (34)
T ss_dssp HHHHHHHHHHHHHTT-HHHHH----HHH------HHHHHHS
T ss_pred CHHHHHHHHHHHHhCCchHHH----HHH------HHHHHHC
Confidence 678999999999999999999 777 6777653
No 51
>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70).
Probab=96.00 E-value=0.011 Score=57.84 Aligned_cols=48 Identities=23% Similarity=0.286 Sum_probs=24.9
Q ss_pred HHHHHhcCChHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHcCChhhHh
Q 027539 135 SKIALDKGKLEDAVNYGTKALARMIAVCGPYHRTTASTYSLLAVVLYHTGDFNQVR 190 (222)
Q Consensus 135 g~~~l~qG~~e~A~~L~~eAL~i~eqV~G~~HpevA~~y~~LA~vy~~~Gd~~eAi 190 (222)
|.++...|++++|.+.|.+++.+ +|+-+.+|..+|.+|+.+|++++|+
T Consensus 372 a~~~~~~g~~~eA~~~~~~al~~--------~p~~~~~~~~lg~~~~~~g~~~~A~ 419 (615)
T TIGR00990 372 ASMNLELGDPDKAEEDFDKALKL--------NSEDPDIYYHRAQLHFIKGEFAQAG 419 (615)
T ss_pred HHHHHHCCCHHHHHHHHHHHHHh--------CCCCHHHHHHHHHHHHHcCCHHHHH
Confidence 44444444444444444444433 2333445566666666666666666
No 52
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=95.90 E-value=0.024 Score=50.53 Aligned_cols=62 Identities=18% Similarity=0.200 Sum_probs=45.5
Q ss_pred CchhHHHHHHHHHHH-HhcCChHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHcCChhhHh
Q 027539 124 TSADGRTLLESSKIA-LDKGKLEDAVNYGTKALARMIAVCGPYHRTTASTYSLLAVVLYHTGDFNQVR 190 (222)
Q Consensus 124 ~s~~a~~lle~g~~~-l~qG~~e~A~~L~~eAL~i~eqV~G~~HpevA~~y~~LA~vy~~~Gd~~eAi 190 (222)
.+.+....++.|... +.+|++++|.+.|.+.+..| |.++.+..++..||.+|+..|++++|+
T Consensus 138 ~~~~e~~~Y~~A~~l~~~~~~y~~Ai~af~~fl~~y-----P~s~~a~~A~y~LG~~y~~~g~~~~A~ 200 (263)
T PRK10803 138 QSGDANTDYNAAIALVQDKSRQDDAIVAFQNFVKKY-----PDSTYQPNANYWLGQLNYNKGKKDDAA 200 (263)
T ss_pred CCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHC-----cCCcchHHHHHHHHHHHHHcCCHHHHH
Confidence 345666777777765 55678888888888888776 556666777777788888888777777
No 53
>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=95.85 E-value=0.0088 Score=52.97 Aligned_cols=70 Identities=20% Similarity=0.270 Sum_probs=58.3
Q ss_pred ccCchhHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHcCChhhHhhchHHhhhhhC
Q 027539 122 GCTSADGRTLLESSKIALDKGKLEDAVNYGTKALARMIAVCGPYHRTTASTYSLLAVVLYHTGDFNQVRQSSVVFQCQLG 201 (222)
Q Consensus 122 ~p~s~~a~~lle~g~~~l~qG~~e~A~~L~~eAL~i~eqV~G~~HpevA~~y~~LA~vy~~~Gd~~eAi~~~~~~~~~~~ 201 (222)
.|...|.-+++ |--.+.||++++|+..|.+|++ .|.-++.+.++-|++.+..++|++++|. ++.
T Consensus 99 ~p~~GdVLNNY--G~FLC~qg~~~eA~q~F~~Al~------~P~Y~~~s~t~eN~G~Cal~~gq~~~A~----~~l---- 162 (250)
T COG3063 99 APNNGDVLNNY--GAFLCAQGRPEEAMQQFERALA------DPAYGEPSDTLENLGLCALKAGQFDQAE----EYL---- 162 (250)
T ss_pred CCCccchhhhh--hHHHHhCCChHHHHHHHHHHHh------CCCCCCcchhhhhhHHHHhhcCCchhHH----HHH----
Confidence 45555555555 9999999999999999999876 4888999999999999999999999999 766
Q ss_pred CCCceEEE
Q 027539 202 DSKSSIII 209 (222)
Q Consensus 202 ~~~~a~~i 209 (222)
+||+.+
T Consensus 163 --~raL~~ 168 (250)
T COG3063 163 --KRALEL 168 (250)
T ss_pred --HHHHHh
Confidence 666543
No 54
>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals. A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.
Probab=95.62 E-value=0.03 Score=49.87 Aligned_cols=50 Identities=20% Similarity=0.119 Sum_probs=42.2
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHcCChhhHh
Q 027539 133 ESSKIALDKGKLEDAVNYGTKALARMIAVCGPYHRTTASTYSLLAVVLYHTGDFNQVR 190 (222)
Q Consensus 133 e~g~~~l~qG~~e~A~~L~~eAL~i~eqV~G~~HpevA~~y~~LA~vy~~~Gd~~eAi 190 (222)
..|..+..+|++++|.+.+.+++.+ .|+-+..+..+|.+|+.+|++++|+
T Consensus 119 ~~a~~~~~~G~~~~A~~~~~~al~~--------~p~~~~~~~~la~i~~~~g~~~eA~ 168 (355)
T cd05804 119 MLAFGLEEAGQYDRAEEAARRALEL--------NPDDAWAVHAVAHVLEMQGRFKEGI 168 (355)
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHhh--------CCCCcHHHHHHHHHHHHcCCHHHHH
Confidence 3488899999999999999999885 4555778888999999999999998
No 55
>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional
Probab=95.56 E-value=0.027 Score=46.88 Aligned_cols=57 Identities=9% Similarity=-0.025 Sum_probs=47.0
Q ss_pred hhHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHcCChhhHh
Q 027539 126 ADGRTLLESSKIALDKGKLEDAVNYGTKALARMIAVCGPYHRTTASTYSLLAVVLYHTGDFNQVR 190 (222)
Q Consensus 126 ~~a~~lle~g~~~l~qG~~e~A~~L~~eAL~i~eqV~G~~HpevA~~y~~LA~vy~~~Gd~~eAi 190 (222)
-+-+.++.-|-...++|++++|..+|.-.. ..-|..+..+.+||.++..+|++++|+
T Consensus 33 ~~l~~lY~~A~~ly~~G~l~~A~~~f~~L~--------~~Dp~~~~y~~gLG~~~Q~~g~~~~AI 89 (157)
T PRK15363 33 QPLNTLYRYAMQLMEVKEFAGAARLFQLLT--------IYDAWSFDYWFRLGECCQAQKHWGEAI 89 (157)
T ss_pred HHHHHHHHHHHHHHHCCCHHHHHHHHHHHH--------HhCcccHHHHHHHHHHHHHHhhHHHHH
Confidence 344567777899999999999998885443 346788889999999999999999999
No 56
>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional
Probab=95.54 E-value=0.025 Score=59.07 Aligned_cols=48 Identities=15% Similarity=0.098 Sum_probs=32.7
Q ss_pred HHHHHhcCChHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHcCChhhHh
Q 027539 135 SKIALDKGKLEDAVNYGTKALARMIAVCGPYHRTTASTYSLLAVVLYHTGDFNQVR 190 (222)
Q Consensus 135 g~~~l~qG~~e~A~~L~~eAL~i~eqV~G~~HpevA~~y~~LA~vy~~~Gd~~eAi 190 (222)
|.++.++|++++|++.|.+|+.+ +|+-+..+.+||.+|..+|++++|+
T Consensus 650 G~aL~~~G~~eeAi~~l~~AL~l--------~P~~~~a~~nLA~al~~lGd~~eA~ 697 (987)
T PRK09782 650 GYALWDSGDIAQSREMLERAHKG--------LPDDPALIRQLAYVNQRLDDMAATQ 697 (987)
T ss_pred HHHHHHCCCHHHHHHHHHHHHHh--------CCCCHHHHHHHHHHHHHCCCHHHHH
Confidence 55555566666666666665553 5666667788888888888888888
No 57
>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A.
Probab=95.47 E-value=0.035 Score=34.27 Aligned_cols=31 Identities=29% Similarity=0.314 Sum_probs=26.1
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHHHHHHH
Q 027539 131 LLESSKIALDKGKLEDAVNYGTKALARMIAV 161 (222)
Q Consensus 131 lle~g~~~l~qG~~e~A~~L~~eAL~i~eqV 161 (222)
+...|+++..+|++++|+++|.+||.+..+.
T Consensus 2 l~~Lg~~~~~~g~~~~Ai~~y~~aL~l~~~~ 32 (36)
T PF13176_consen 2 LNNLGRIYRQQGDYEKAIEYYEQALALARDP 32 (36)
T ss_dssp HHHHHHHHHHCT-HHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhcccc
Confidence 3456999999999999999999999887664
No 58
>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C
Probab=95.43 E-value=0.024 Score=37.78 Aligned_cols=54 Identities=22% Similarity=0.305 Sum_probs=44.7
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHcCChhhHh
Q 027539 129 RTLLESSKIALDKGKLEDAVNYGTKALARMIAVCGPYHRTTASTYSLLAVVLYHTGDFNQVR 190 (222)
Q Consensus 129 ~~lle~g~~~l~qG~~e~A~~L~~eAL~i~eqV~G~~HpevA~~y~~LA~vy~~~Gd~~eAi 190 (222)
.-.+..|.++..+|++++|.+++.+++.+. +.++ ..+..+|.++..+|++++|.
T Consensus 35 ~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~-----~~~~---~~~~~~~~~~~~~~~~~~a~ 88 (100)
T cd00189 35 DAYYNLAAAYYKLGKYEEALEDYEKALELD-----PDNA---KAYYNLGLAYYKLGKYEEAL 88 (100)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhCC-----Ccch---hHHHHHHHHHHHHHhHHHHH
Confidence 335567999999999999999999988752 3333 78899999999999999999
No 59
>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A.
Probab=95.41 E-value=0.031 Score=40.18 Aligned_cols=47 Identities=21% Similarity=0.340 Sum_probs=35.1
Q ss_pred hcCChHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHcCChhhHhhc
Q 027539 140 DKGKLEDAVNYGTKALARMIAVCGPYHRTTASTYSLLAVVLYHTGDFNQVRQS 192 (222)
Q Consensus 140 ~qG~~e~A~~L~~eAL~i~eqV~G~~HpevA~~y~~LA~vy~~~Gd~~eAi~~ 192 (222)
++|+++.|+.++.+++..... .| -...+..||.+|+++|++++|+..
T Consensus 1 ~~~~y~~Ai~~~~k~~~~~~~-----~~-~~~~~~~la~~~~~~~~y~~A~~~ 47 (84)
T PF12895_consen 1 DQGNYENAIKYYEKLLELDPT-----NP-NSAYLYNLAQCYFQQGKYEEAIEL 47 (84)
T ss_dssp HTT-HHHHHHHHHHHHHHHCG-----TH-HHHHHHHHHHHHHHTTHHHHHHHH
T ss_pred CCccHHHHHHHHHHHHHHCCC-----Ch-hHHHHHHHHHHHHHCCCHHHHHHH
Confidence 478888888888888776543 23 444666699999999999999933
No 60
>PF13431 TPR_17: Tetratricopeptide repeat
Probab=95.40 E-value=0.01 Score=36.63 Aligned_cols=26 Identities=23% Similarity=0.438 Sum_probs=24.5
Q ss_pred CChHHHHHHHHHHHHHHHcCChhhHh
Q 027539 165 YHRTTASTYSLLAVVLYHTGDFNQVR 190 (222)
Q Consensus 165 ~HpevA~~y~~LA~vy~~~Gd~~eAi 190 (222)
.+|+-+..|++||.+|+..|++++|+
T Consensus 8 ~~P~n~~a~~nla~~~~~~g~~~~A~ 33 (34)
T PF13431_consen 8 LNPNNAEAYNNLANLYLNQGDYEEAI 33 (34)
T ss_pred HCCCCHHHHHHHHHHHHHCcCHHhhc
Confidence 47999999999999999999999997
No 61
>PRK11788 tetratricopeptide repeat protein; Provisional
Probab=95.21 E-value=0.05 Score=48.95 Aligned_cols=52 Identities=27% Similarity=0.290 Sum_probs=35.2
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHcCChhhHh
Q 027539 131 LLESSKIALDKGKLEDAVNYGTKALARMIAVCGPYHRTTASTYSLLAVVLYHTGDFNQVR 190 (222)
Q Consensus 131 lle~g~~~l~qG~~e~A~~L~~eAL~i~eqV~G~~HpevA~~y~~LA~vy~~~Gd~~eAi 190 (222)
....|..+..+|++++|..+|.+++.+ .|+...++..||.+|..+|++++|+
T Consensus 183 ~~~la~~~~~~~~~~~A~~~~~~al~~--------~p~~~~~~~~la~~~~~~g~~~~A~ 234 (389)
T PRK11788 183 YCELAQQALARGDLDAARALLKKALAA--------DPQCVRASILLGDLALAQGDYAAAI 234 (389)
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHhH--------CcCCHHHHHHHHHHHHHCCCHHHHH
Confidence 345566777777777777777777653 3444556677777777777777776
No 62
>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=95.19 E-value=0.019 Score=50.84 Aligned_cols=90 Identities=11% Similarity=-0.044 Sum_probs=70.2
Q ss_pred cccCchhHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHcCChhhHh----------
Q 027539 121 VGCTSADGRTLLESSKIALDKGKLEDAVNYGTKALARMIAVCGPYHRTTASTYSLLAVVLYHTGDFNQVR---------- 190 (222)
Q Consensus 121 ~~p~s~~a~~lle~g~~~l~qG~~e~A~~L~~eAL~i~eqV~G~~HpevA~~y~~LA~vy~~~Gd~~eAi---------- 190 (222)
.+|++.++...+ |-.+..+|..+.|.+.|.+|++ +||.-+..+||-+.-++.+|++++|.
T Consensus 64 ~DPs~~~a~~~~--A~~Yq~~Ge~~~A~e~YrkAls--------l~p~~GdVLNNYG~FLC~qg~~~eA~q~F~~Al~~P 133 (250)
T COG3063 64 HDPSYYLAHLVR--AHYYQKLGENDLADESYRKALS--------LAPNNGDVLNNYGAFLCAQGRPEEAMQQFERALADP 133 (250)
T ss_pred hCcccHHHHHHH--HHHHHHcCChhhHHHHHHHHHh--------cCCCccchhhhhhHHHHhCCChHHHHHHHHHHHhCC
Confidence 456777776665 8889999999999999999996 58999999999999999999999997
Q ss_pred ---------hchHHhhhhhCCCCceEEEeeeechhcccc
Q 027539 191 ---------QSSVVFQCQLGDSKSSIIITSFCTEVLIQR 220 (222)
Q Consensus 191 ---------~~~~~~~~~~~~~~~a~~i~e~~~~~~~~~ 220 (222)
..++.+.-+-|+..+|-++.+|.+...-|.
T Consensus 134 ~Y~~~s~t~eN~G~Cal~~gq~~~A~~~l~raL~~dp~~ 172 (250)
T COG3063 134 AYGEPSDTLENLGLCALKAGQFDQAEEYLKRALELDPQF 172 (250)
T ss_pred CCCCcchhhhhhHHHHhhcCCchhHHHHHHHHHHhCcCC
Confidence 222333334477777777777777665554
No 63
>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein. This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Probab=95.16 E-value=0.047 Score=52.78 Aligned_cols=66 Identities=20% Similarity=0.108 Sum_probs=48.2
Q ss_pred cCchhHHHHHHHHHHHHhcCChHHHHHHHHHHHHH---------------------------HHHHhCCCChHHHHHHHH
Q 027539 123 CTSADGRTLLESSKIALDKGKLEDAVNYGTKALAR---------------------------MIAVCGPYHRTTASTYSL 175 (222)
Q Consensus 123 p~s~~a~~lle~g~~~l~qG~~e~A~~L~~eAL~i---------------------------~eqV~G~~HpevA~~y~~ 175 (222)
|..+.+.. ..|.++..+|++++|...+.+++.. ++++.+...|..+..+..
T Consensus 53 p~~~~~~~--~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ 130 (899)
T TIGR02917 53 PNDAEARF--LLGKIYLALGDYAAAEKELRKALSLGYPKNQVLPLLARAYLLQGKFQQVLDELPGKTLLDDEGAAELLAL 130 (899)
T ss_pred CCCHHHHH--HHHHHHHHcCCHHHHHHHHHHHHHcCCChhhhHHHHHHHHHHCCCHHHHHHhhcccccCCchhhHHHHHH
Confidence 33444444 4599999999999999998887653 334444566777788888
Q ss_pred HHHHHHHcCChhhHh
Q 027539 176 LAVVLYHTGDFNQVR 190 (222)
Q Consensus 176 LA~vy~~~Gd~~eAi 190 (222)
+|..|..+|++++|+
T Consensus 131 ~~~~~~~~~~~~~A~ 145 (899)
T TIGR02917 131 RGLAYLGLGQLELAQ 145 (899)
T ss_pred HHHHHHHcCCHHHHH
Confidence 888888888888887
No 64
>PRK04841 transcriptional regulator MalT; Provisional
Probab=95.14 E-value=0.056 Score=54.53 Aligned_cols=61 Identities=18% Similarity=0.172 Sum_probs=53.9
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHcCChhhHh
Q 027539 130 TLLESSKIALDKGKLEDAVNYGTKALARMIAVCGPYHRTTASTYSLLAVVLYHTGDFNQVR 190 (222)
Q Consensus 130 ~lle~g~~~l~qG~~e~A~~L~~eAL~i~eqV~G~~HpevA~~y~~LA~vy~~~Gd~~eAi 190 (222)
.....|.++..+|++++|.+++.+++.+.++..++.++..+..+..+|.+++.+|++++|.
T Consensus 533 ~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~ 593 (903)
T PRK04841 533 SLLQQSEILFAQGFLQAAYETQEKAFQLIEEQHLEQLPMHEFLLRIRAQLLWEWARLDEAE 593 (903)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHhcCHHHHH
Confidence 3445577889999999999999999999999877777877888889999999999999998
No 65
>PRK15174 Vi polysaccharide export protein VexE; Provisional
Probab=95.14 E-value=0.046 Score=54.39 Aligned_cols=58 Identities=16% Similarity=0.194 Sum_probs=44.1
Q ss_pred cCchhHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHcCChhhHh
Q 027539 123 CTSADGRTLLESSKIALDKGKLEDAVNYGTKALARMIAVCGPYHRTTASTYSLLAVVLYHTGDFNQVR 190 (222)
Q Consensus 123 p~s~~a~~lle~g~~~l~qG~~e~A~~L~~eAL~i~eqV~G~~HpevA~~y~~LA~vy~~~Gd~~eAi 190 (222)
|....+ ....|.++..+|++++|.+.+.+++.+ +|+.+..+.+||.+|..+|++++|+
T Consensus 281 P~~~~a--~~~lg~~l~~~g~~~eA~~~l~~al~l--------~P~~~~a~~~La~~l~~~G~~~eA~ 338 (656)
T PRK15174 281 SDNVRI--VTLYADALIRTGQNEKAIPLLQQSLAT--------HPDLPYVRAMYARALRQVGQYTAAS 338 (656)
T ss_pred CCCHHH--HHHHHHHHHHCCCHHHHHHHHHHHHHh--------CCCCHHHHHHHHHHHHHCCCHHHHH
Confidence 444444 344488888889999898888888874 5555566778899999999999887
No 66
>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A ....
Probab=95.10 E-value=0.0098 Score=35.27 Aligned_cols=30 Identities=13% Similarity=0.404 Sum_probs=24.4
Q ss_pred HHHHHHHHHHHHHcCChhhHhhchHHhhhhhCCCCceEEE
Q 027539 170 ASTYSLLAVVLYHTGDFNQVRQSSVVFQCQLGDSKSSIII 209 (222)
Q Consensus 170 A~~y~~LA~vy~~~Gd~~eAi~~~~~~~~~~~~~~~a~~i 209 (222)
|..+..+|.+|+.+|++++|+ .+. ++|+.+
T Consensus 1 a~~~~~lg~~~~~~~~~~~A~----~~~------~~al~l 30 (34)
T PF07719_consen 1 AEAWYYLGQAYYQLGNYEEAI----EYF------EKALEL 30 (34)
T ss_dssp HHHHHHHHHHHHHTT-HHHHH----HHH------HHHHHH
T ss_pred CHHHHHHHHHHHHhCCHHHHH----HHH------HHHHHH
Confidence 578999999999999999999 776 566544
No 67
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=95.09 E-value=0.066 Score=47.74 Aligned_cols=59 Identities=19% Similarity=0.271 Sum_probs=52.7
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHcCChhhHhhchHHhh
Q 027539 130 TLLESSKIALDKGKLEDAVNYGTKALARMIAVCGPYHRTTASTYSLLAVVLYHTGDFNQVRQSSVVFQ 197 (222)
Q Consensus 130 ~lle~g~~~l~qG~~e~A~~L~~eAL~i~eqV~G~~HpevA~~y~~LA~vy~~~Gd~~eAi~~~~~~~ 197 (222)
-.+-.|..+..+|++++|...|..++..| |.||.+..++..+|.+|..+|++++|. ..+
T Consensus 182 A~y~LG~~y~~~g~~~~A~~~f~~vv~~y-----P~s~~~~dAl~klg~~~~~~g~~~~A~----~~~ 240 (263)
T PRK10803 182 ANYWLGQLNYNKGKKDDAAYYFASVVKNY-----PKSPKAADAMFKVGVIMQDKGDTAKAK----AVY 240 (263)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHC-----CCCcchhHHHHHHHHHHHHcCCHHHHH----HHH
Confidence 45667999999999999998888887776 899999999999999999999999999 666
No 68
>KOG4563 consensus Cell cycle-regulated histone H1-binding protein [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=95.08 E-value=0.061 Score=50.40 Aligned_cols=67 Identities=16% Similarity=0.111 Sum_probs=63.6
Q ss_pred CchhHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHcCChhhHh
Q 027539 124 TSADGRTLLESSKIALDKGKLEDAVNYGTKALARMIAVCGPYHRTTASTYSLLAVVLYHTGDFNQVR 190 (222)
Q Consensus 124 ~s~~a~~lle~g~~~l~qG~~e~A~~L~~eAL~i~eqV~G~~HpevA~~y~~LA~vy~~~Gd~~eAi 190 (222)
....+.+++..|+.++.++.++.|..-|++|..+...+||.-|-+++..+..-+..+...++++.++
T Consensus 37 ~~~~~e~lv~~G~~~~~~~d~~~Avda~s~A~~l~~ei~Ge~~~e~~eal~~YGkslLela~~e~~V 103 (400)
T KOG4563|consen 37 KEKTLEELVQAGRRALCNNDIDKAVDALSEATELSDEIYGEKHLETFEALFLYGKSLLELAKEESQV 103 (400)
T ss_pred HHHHHHHHHHhhhHHHhcccHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3466889999999999999999999999999999999999999999999999999999999998888
No 69
>COG1729 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=95.06 E-value=0.1 Score=46.86 Aligned_cols=82 Identities=16% Similarity=0.147 Sum_probs=63.1
Q ss_pred cccccCchhHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHcCChhhHhhchHHhhh
Q 027539 119 KHVGCTSADGRTLLESSKIALDKGKLEDAVNYGTKALARMIAVCGPYHRTTASTYSLLAVVLYHTGDFNQVRQSSVVFQC 198 (222)
Q Consensus 119 K~~~p~s~~a~~lle~g~~~l~qG~~e~A~~L~~eAL~i~eqV~G~~HpevA~~y~~LA~vy~~~Gd~~eAi~~~~~~~~ 198 (222)
++..|.+ ++..+++.|--++..|+|.+|..-|.+=+.-| |.-+-++.++.-|+..+|.+|+|++|...-.....
T Consensus 133 ~~~~p~~-~~~~~Y~~A~~~~ksgdy~~A~~~F~~fi~~Y-----P~s~~~~nA~yWLGe~~y~qg~y~~Aa~~f~~~~k 206 (262)
T COG1729 133 GDGAPVS-PATKLYNAALDLYKSGDYAEAEQAFQAFIKKY-----PNSTYTPNAYYWLGESLYAQGDYEDAAYIFARVVK 206 (262)
T ss_pred CCCCCCC-chhHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-----CCCcccchhHHHHHHHHHhcccchHHHHHHHHHHH
Confidence 3344444 77789999999999999999998887765543 88899999999999999999999999844444444
Q ss_pred hhCCCCce
Q 027539 199 QLGDSKSS 206 (222)
Q Consensus 199 ~~~~~~~a 206 (222)
-.+++.+|
T Consensus 207 ~~P~s~KA 214 (262)
T COG1729 207 DYPKSPKA 214 (262)
T ss_pred hCCCCCCC
Confidence 45555554
No 70
>PRK11788 tetratricopeptide repeat protein; Provisional
Probab=95.00 E-value=0.046 Score=49.18 Aligned_cols=56 Identities=11% Similarity=-0.012 Sum_probs=41.3
Q ss_pred hHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHcCChhhHh
Q 027539 127 DGRTLLESSKIALDKGKLEDAVNYGTKALARMIAVCGPYHRTTASTYSLLAVVLYHTGDFNQVR 190 (222)
Q Consensus 127 ~a~~lle~g~~~l~qG~~e~A~~L~~eAL~i~eqV~G~~HpevA~~y~~LA~vy~~~Gd~~eAi 190 (222)
.+...+-.|..+..+|++++|+++|.+++.. +|+...++..+|.+|..+|++++|+
T Consensus 34 ~~~~~y~~g~~~~~~~~~~~A~~~~~~al~~--------~p~~~~~~~~la~~~~~~g~~~~A~ 89 (389)
T PRK11788 34 RLSRDYFKGLNFLLNEQPDKAIDLFIEMLKV--------DPETVELHLALGNLFRRRGEVDRAI 89 (389)
T ss_pred hccHHHHHHHHHHhcCChHHHHHHHHHHHhc--------CcccHHHHHHHHHHHHHcCcHHHHH
Confidence 3344555677788888888888888887764 4566677788888888888888887
No 71
>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A ....
Probab=94.99 E-value=0.071 Score=31.78 Aligned_cols=31 Identities=19% Similarity=0.276 Sum_probs=26.3
Q ss_pred HHHHHHHHHHHHhcCChHHHHHHHHHHHHHH
Q 027539 128 GRTLLESSKIALDKGKLEDAVNYGTKALARM 158 (222)
Q Consensus 128 a~~lle~g~~~l~qG~~e~A~~L~~eAL~i~ 158 (222)
|+..+..|.++..+|++++|++.|++|+.+-
T Consensus 1 a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~ 31 (34)
T PF00515_consen 1 AEAYYNLGNAYFQLGDYEEALEYYQRALELD 31 (34)
T ss_dssp HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHS
T ss_pred CHHHHHHHHHHHHhCCchHHHHHHHHHHHHC
Confidence 4556788999999999999999999999873
No 72
>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A ....
Probab=94.90 E-value=0.078 Score=31.22 Aligned_cols=31 Identities=23% Similarity=0.224 Sum_probs=26.3
Q ss_pred HHHHHHHHHHHHhcCChHHHHHHHHHHHHHH
Q 027539 128 GRTLLESSKIALDKGKLEDAVNYGTKALARM 158 (222)
Q Consensus 128 a~~lle~g~~~l~qG~~e~A~~L~~eAL~i~ 158 (222)
|+-.+..|..+..+|++++|.+.|.+|+.+.
T Consensus 1 a~~~~~lg~~~~~~~~~~~A~~~~~~al~l~ 31 (34)
T PF07719_consen 1 AEAWYYLGQAYYQLGNYEEAIEYFEKALELD 31 (34)
T ss_dssp HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHS
T ss_pred CHHHHHHHHHHHHhCCHHHHHHHHHHHHHHC
Confidence 3456778999999999999999999999874
No 73
>PF14561 TPR_20: Tetratricopeptide repeat; PDB: 3QOU_A 2R5S_A 3QDN_B.
Probab=94.78 E-value=0.19 Score=37.74 Aligned_cols=56 Identities=18% Similarity=0.216 Sum_probs=43.0
Q ss_pred hhHHHHHHHHHHHHhcCChHHHHHHHHHHHH---------------HHHHHhCCCChHHHHHHHHHHHHHH
Q 027539 126 ADGRTLLESSKIALDKGKLEDAVNYGTKALA---------------RMIAVCGPYHRTTASTYSLLAVVLY 181 (222)
Q Consensus 126 ~~a~~lle~g~~~l~qG~~e~A~~L~~eAL~---------------i~eqV~G~~HpevA~~y~~LA~vy~ 181 (222)
.|.+..+..|..++..|++++|++.+.+.+. -.-+++|+-||-|.+.-+.|++++|
T Consensus 20 ~D~~ar~~lA~~~~~~g~~e~Al~~Ll~~v~~dr~~~~~~ar~~ll~~f~~lg~~~plv~~~RRkL~~lL~ 90 (90)
T PF14561_consen 20 DDLDARYALADALLAAGDYEEALDQLLELVRRDRDYEDDAARKRLLDIFELLGPGDPLVSEYRRKLASLLF 90 (90)
T ss_dssp T-HHHHHHHHHHHHHTT-HHHHHHHHHHHHCC-TTCCCCHHHHHHHHHHHHH-TT-HHHHHHHHHHHHHH-
T ss_pred CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCccccccHHHHHHHHHHHHcCCCChHHHHHHHHHHHHhC
Confidence 4556667779999999999999999877765 3447889999999999999999876
No 74
>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=94.56 E-value=0.071 Score=53.78 Aligned_cols=60 Identities=23% Similarity=0.130 Sum_probs=46.2
Q ss_pred cccCchhHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHcCChhhHh
Q 027539 121 VGCTSADGRTLLESSKIALDKGKLEDAVNYGTKALARMIAVCGPYHRTTASTYSLLAVVLYHTGDFNQVR 190 (222)
Q Consensus 121 ~~p~s~~a~~lle~g~~~l~qG~~e~A~~L~~eAL~i~eqV~G~~HpevA~~y~~LA~vy~~~Gd~~eAi 190 (222)
..|.+.++..+ .|....+.|++++|.++|.+++. -||+-+..+..+|..+..+|+.++|+
T Consensus 149 ~~p~~~~~~~~--~a~~l~~~g~~~~A~~~y~~~~~--------~~p~~~~~~~~~a~~l~~~G~~~~A~ 208 (694)
T PRK15179 149 GGSSSAREILL--EAKSWDEIGQSEQADACFERLSR--------QHPEFENGYVGWAQSLTRRGALWRAR 208 (694)
T ss_pred cCCCCHHHHHH--HHHHHHHhcchHHHHHHHHHHHh--------cCCCcHHHHHHHHHHHHHcCCHHHHH
Confidence 34555555444 47788888888888888777775 47788888899999999999999998
No 75
>COG4105 ComL DNA uptake lipoprotein [General function prediction only]
Probab=94.55 E-value=0.17 Score=45.23 Aligned_cols=75 Identities=16% Similarity=0.142 Sum_probs=61.3
Q ss_pred hHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHcCChhhHhhchHHhhhhhCCCCce
Q 027539 127 DGRTLLESSKIALDKGKLEDAVNYGTKALARMIAVCGPYHRTTASTYSLLAVVLYHTGDFNQVRQSSVVFQCQLGDSKSS 206 (222)
Q Consensus 127 ~a~~lle~g~~~l~qG~~e~A~~L~~eAL~i~eqV~G~~HpevA~~y~~LA~vy~~~Gd~~eAi~~~~~~~~~~~~~~~a 206 (222)
-+.++.+.|+..++.|++++|.+.|+... .+-.+| |..-++.-.|+-.+|+.|++++|+.....|-++.+-+.++
T Consensus 33 p~~~LY~~g~~~L~~gn~~~A~~~fe~l~--~~~p~s---~~~~qa~l~l~yA~Yk~~~y~~A~~~~drFi~lyP~~~n~ 107 (254)
T COG4105 33 PASELYNEGLTELQKGNYEEAIKYFEALD--SRHPFS---PYSEQAQLDLAYAYYKNGEYDLALAYIDRFIRLYPTHPNA 107 (254)
T ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHH--HcCCCC---cccHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCCCh
Confidence 46789999999999999999999997665 344444 4456778899999999999999999988888777666543
No 76
>PRK11447 cellulose synthase subunit BcsC; Provisional
Probab=94.46 E-value=0.052 Score=57.20 Aligned_cols=52 Identities=19% Similarity=0.158 Sum_probs=46.5
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHcCChhhHh
Q 027539 131 LLESSKIALDKGKLEDAVNYGTKALARMIAVCGPYHRTTASTYSLLAVVLYHTGDFNQVR 190 (222)
Q Consensus 131 lle~g~~~l~qG~~e~A~~L~~eAL~i~eqV~G~~HpevA~~y~~LA~vy~~~Gd~~eAi 190 (222)
.+..|..++.+|++++|.++|.+++.+ +|+-+..+..||.+|..+|++++|+
T Consensus 354 ~~~~g~~~~~~g~~~eA~~~~~~Al~~--------~P~~~~a~~~Lg~~~~~~g~~~eA~ 405 (1157)
T PRK11447 354 LIQQGDAALKANNLAQAERLYQQARQV--------DNTDSYAVLGLGDVAMARKDYAAAE 405 (1157)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHh--------CCCCHHHHHHHHHHHHHCCCHHHHH
Confidence 456688899999999999999999987 5666778999999999999999999
No 77
>PRK10153 DNA-binding transcriptional activator CadC; Provisional
Probab=94.32 E-value=0.081 Score=51.55 Aligned_cols=67 Identities=22% Similarity=0.103 Sum_probs=54.0
Q ss_pred ccCchhHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHcCChhhHhhchHHhhhhhC
Q 027539 122 GCTSADGRTLLESSKIALDKGKLEDAVNYGTKALARMIAVCGPYHRTTASTYSLLAVVLYHTGDFNQVRQSSVVFQCQLG 201 (222)
Q Consensus 122 ~p~s~~a~~lle~g~~~l~qG~~e~A~~L~~eAL~i~eqV~G~~HpevA~~y~~LA~vy~~~Gd~~eAi~~~~~~~~~~~ 201 (222)
.|..+.+.+.+ |-.+..+|++++|...+++|+.+- |. +..|..+|.+|-..|++++|+ +++
T Consensus 416 ~~~~~~~~~al--a~~~~~~g~~~~A~~~l~rAl~L~--------ps-~~a~~~lG~~~~~~G~~~eA~----~~~---- 476 (517)
T PRK10153 416 LNVLPRIYEIL--AVQALVKGKTDEAYQAINKAIDLE--------MS-WLNYVLLGKVYELKGDNRLAA----DAY---- 476 (517)
T ss_pred CcCChHHHHHH--HHHHHhcCCHHHHHHHHHHHHHcC--------CC-HHHHHHHHHHHHHcCCHHHHH----HHH----
Confidence 34444555554 777888999999999999999876 54 789999999999999999999 666
Q ss_pred CCCceEEE
Q 027539 202 DSKSSIII 209 (222)
Q Consensus 202 ~~~~a~~i 209 (222)
++|+.+
T Consensus 477 --~~A~~L 482 (517)
T PRK10153 477 --STAFNL 482 (517)
T ss_pred --HHHHhc
Confidence 566554
No 78
>PRK11447 cellulose synthase subunit BcsC; Provisional
Probab=94.24 E-value=0.076 Score=55.98 Aligned_cols=49 Identities=16% Similarity=0.161 Sum_probs=44.8
Q ss_pred HHHHHHhcCChHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHcCChhhHh
Q 027539 134 SSKIALDKGKLEDAVNYGTKALARMIAVCGPYHRTTASTYSLLAVVLYHTGDFNQVR 190 (222)
Q Consensus 134 ~g~~~l~qG~~e~A~~L~~eAL~i~eqV~G~~HpevA~~y~~LA~vy~~~Gd~~eAi 190 (222)
.|..++.+|++++|++.|.+++.+ +|+.+..+..||.+|..+|++++|+
T Consensus 275 ~G~~~~~~g~~~~A~~~l~~aL~~--------~P~~~~a~~~Lg~~~~~~g~~~eA~ 323 (1157)
T PRK11447 275 QGLAAVDSGQGGKAIPELQQAVRA--------NPKDSEALGALGQAYSQQGDRARAV 323 (1157)
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHh--------CCCCHHHHHHHHHHHHHcCCHHHHH
Confidence 388899999999999999999986 5666788999999999999999999
No 79
>PRK15174 Vi polysaccharide export protein VexE; Provisional
Probab=94.23 E-value=0.09 Score=52.30 Aligned_cols=60 Identities=12% Similarity=0.059 Sum_probs=49.5
Q ss_pred cccCchhHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHcCChhhHh
Q 027539 121 VGCTSADGRTLLESSKIALDKGKLEDAVNYGTKALARMIAVCGPYHRTTASTYSLLAVVLYHTGDFNQVR 190 (222)
Q Consensus 121 ~~p~s~~a~~lle~g~~~l~qG~~e~A~~L~~eAL~i~eqV~G~~HpevA~~y~~LA~vy~~~Gd~~eAi 190 (222)
..|..+++...+ |.++...|++++|...|.+++.. +|+.+..+..+|.++..+|++++|+
T Consensus 313 l~P~~~~a~~~L--a~~l~~~G~~~eA~~~l~~al~~--------~P~~~~~~~~~a~al~~~G~~deA~ 372 (656)
T PRK15174 313 THPDLPYVRAMY--ARALRQVGQYTAASDEFVQLARE--------KGVTSKWNRYAAAALLQAGKTSEAE 372 (656)
T ss_pred hCCCCHHHHHHH--HHHHHHCCCHHHHHHHHHHHHHh--------CccchHHHHHHHHHHHHCCCHHHHH
Confidence 356666665554 99999999999999999888874 5666667788899999999999999
No 80
>PRK10747 putative protoheme IX biogenesis protein; Provisional
Probab=94.16 E-value=0.11 Score=48.33 Aligned_cols=63 Identities=13% Similarity=0.160 Sum_probs=51.9
Q ss_pred HHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHcCChhhHhhchHHhhhhhCCCCceE
Q 027539 128 GRTLLESSKIALDKGKLEDAVNYGTKALARMIAVCGPYHRTTASTYSLLAVVLYHTGDFNQVRQSSVVFQCQLGDSKSSI 207 (222)
Q Consensus 128 a~~lle~g~~~l~qG~~e~A~~L~~eAL~i~eqV~G~~HpevA~~y~~LA~vy~~~Gd~~eAi~~~~~~~~~~~~~~~a~ 207 (222)
+.-.+..|++++.+|++++|.+.|.+++++ +|+... +..||.++-++|+.++|. .++ ++++
T Consensus 328 ~~l~l~lgrl~~~~~~~~~A~~~le~al~~--------~P~~~~-~~~La~~~~~~g~~~~A~----~~~------~~~l 388 (398)
T PRK10747 328 PLLWSTLGQLLMKHGEWQEASLAFRAALKQ--------RPDAYD-YAWLADALDRLHKPEEAA----AMR------RDGL 388 (398)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--------CCCHHH-HHHHHHHHHHcCCHHHHH----HHH------HHHH
Confidence 334556699999999999999999999986 677655 447999999999999999 888 6665
Q ss_pred EE
Q 027539 208 II 209 (222)
Q Consensus 208 ~i 209 (222)
..
T Consensus 389 ~~ 390 (398)
T PRK10747 389 ML 390 (398)
T ss_pred hh
Confidence 43
No 81
>PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A ....
Probab=94.15 E-value=0.022 Score=33.93 Aligned_cols=30 Identities=17% Similarity=0.357 Sum_probs=24.5
Q ss_pred HHHHHHHHHHHHHcCChhhHhhchHHhhhhhCCCCceEEE
Q 027539 170 ASTYSLLAVVLYHTGDFNQVRQSSVVFQCQLGDSKSSIII 209 (222)
Q Consensus 170 A~~y~~LA~vy~~~Gd~~eAi~~~~~~~~~~~~~~~a~~i 209 (222)
|..|..+|.+|..+|++++|+ .+. ++|+.+
T Consensus 1 a~~~~~lg~~y~~~~~~~~A~----~~~------~~a~~~ 30 (34)
T PF13181_consen 1 AEAYYNLGKIYEQLGDYEEAL----EYF------EKALEL 30 (34)
T ss_dssp -HHHHHHHHHHHHTTSHHHHH----HHH------HHHHHH
T ss_pred CHHHHHHHHHHHHcCCHHHHH----HHH------HHHHhh
Confidence 578999999999999999999 666 566543
No 82
>PF13512 TPR_18: Tetratricopeptide repeat
Probab=94.13 E-value=0.23 Score=40.76 Aligned_cols=67 Identities=22% Similarity=0.313 Sum_probs=54.3
Q ss_pred hhHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHcCChhhHhhchHHhh
Q 027539 126 ADGRTLLESSKIALDKGKLEDAVNYGTKALARMIAVCGPYHRTTASTYSLLAVVLYHTGDFNQVRQSSVVFQ 197 (222)
Q Consensus 126 ~~a~~lle~g~~~l~qG~~e~A~~L~~eAL~i~eqV~G~~HpevA~~y~~LA~vy~~~Gd~~eAi~~~~~~~ 197 (222)
..+.+++..|+..+++|++++|.+.++...+=| |--|-...+...|+-+||+.|++++|++---.|-
T Consensus 8 ~~~~~ly~~a~~~l~~~~Y~~A~~~le~L~~ry-----P~g~ya~qAqL~l~yayy~~~~y~~A~a~~~rFi 74 (142)
T PF13512_consen 8 KSPQELYQEAQEALQKGNYEEAIKQLEALDTRY-----PFGEYAEQAQLDLAYAYYKQGDYEEAIAAYDRFI 74 (142)
T ss_pred CCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcC-----CCCcccHHHHHHHHHHHHHccCHHHHHHHHHHHH
Confidence 446789999999999999999988887655443 6666677889999999999999999995554443
No 83
>PRK12370 invasion protein regulator; Provisional
Probab=94.05 E-value=0.096 Score=50.87 Aligned_cols=60 Identities=17% Similarity=0.077 Sum_probs=37.8
Q ss_pred cccCchhHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHcCChhhHh
Q 027539 121 VGCTSADGRTLLESSKIALDKGKLEDAVNYGTKALARMIAVCGPYHRTTASTYSLLAVVLYHTGDFNQVR 190 (222)
Q Consensus 121 ~~p~s~~a~~lle~g~~~l~qG~~e~A~~L~~eAL~i~eqV~G~~HpevA~~y~~LA~vy~~~Gd~~eAi 190 (222)
.+|.++.+.. ..|.++..+|++++|++.+.+|+.+ .|.++. .+..++.+++.+|++++|+
T Consensus 367 l~P~~~~a~~--~lg~~l~~~G~~~eAi~~~~~Al~l-----~P~~~~---~~~~~~~~~~~~g~~eeA~ 426 (553)
T PRK12370 367 LSPISADIKY--YYGWNLFMAGQLEEALQTINECLKL-----DPTRAA---AGITKLWITYYHTGIDDAI 426 (553)
T ss_pred hCCCCHHHHH--HHHHHHHHCCCHHHHHHHHHHHHhc-----CCCChh---hHHHHHHHHHhccCHHHHH
Confidence 3556666554 4599999999999999999888775 233332 2233444455555555554
No 84
>KOG4555 consensus TPR repeat-containing protein [Function unknown]
Probab=93.98 E-value=0.15 Score=42.17 Aligned_cols=53 Identities=25% Similarity=0.195 Sum_probs=45.2
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHcCChhhHh
Q 027539 130 TLLESSKIALDKGKLEDAVNYGTKALARMIAVCGPYHRTTASTYSLLAVVLYHTGDFNQVR 190 (222)
Q Consensus 130 ~lle~g~~~l~qG~~e~A~~L~~eAL~i~eqV~G~~HpevA~~y~~LA~vy~~~Gd~~eAi 190 (222)
++=-.|-+....|+++.|+|+|.+||.+ -|+-|.+|||-|..|..+|+.++|+
T Consensus 45 ~LEl~~valaE~g~Ld~AlE~F~qal~l--------~P~raSayNNRAQa~RLq~~~e~AL 97 (175)
T KOG4555|consen 45 ELELKAIALAEAGDLDGALELFGQALCL--------APERASAYNNRAQALRLQGDDEEAL 97 (175)
T ss_pred HHHHHHHHHHhccchHHHHHHHHHHHHh--------cccchHhhccHHHHHHHcCChHHHH
Confidence 3333566677778999999999999975 5888999999999999999999998
No 85
>KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=93.86 E-value=0.049 Score=51.94 Aligned_cols=57 Identities=23% Similarity=0.186 Sum_probs=48.2
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHcCChhhHh
Q 027539 130 TLLESSKIALDKGKLEDAVNYGTKALARMIAVCGPYHRTTASTYSLLAVVLYHTGDFNQVR 190 (222)
Q Consensus 130 ~lle~g~~~l~qG~~e~A~~L~~eAL~i~eqV~G~~HpevA~~y~~LA~vy~~~Gd~~eAi 190 (222)
.-=+.|.....+|++.+|++.|++||+|=.. .-.-.|.+|.+.|.|+..+|+..+|+
T Consensus 251 ~~k~~gN~~fk~G~y~~A~E~Yteal~idP~----n~~~naklY~nra~v~~rLgrl~eai 307 (486)
T KOG0550|consen 251 VKKERGNDAFKNGNYRKAYECYTEALNIDPS----NKKTNAKLYGNRALVNIRLGRLREAI 307 (486)
T ss_pred HHHhhhhhHhhccchhHHHHHHHHhhcCCcc----ccchhHHHHHHhHhhhcccCCchhhh
Confidence 3346788888999999999999999998544 33456899999999999999999999
No 86
>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals. A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.
Probab=93.74 E-value=0.13 Score=45.64 Aligned_cols=58 Identities=9% Similarity=0.163 Sum_probs=47.5
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHHHHHHHhCCCChHH-HHHHHHHHHHHHHcCChhhHhhchHHhh
Q 027539 131 LLESSKIALDKGKLEDAVNYGTKALARMIAVCGPYHRTT-ASTYSLLAVVLYHTGDFNQVRQSSVVFQ 197 (222)
Q Consensus 131 lle~g~~~l~qG~~e~A~~L~~eAL~i~eqV~G~~Hpev-A~~y~~LA~vy~~~Gd~~eAi~~~~~~~ 197 (222)
....|.++..+|++++|..++.+++..... +|+. ..+|..+|.++..+|++++|+ ..+
T Consensus 151 ~~~la~i~~~~g~~~eA~~~l~~~l~~~~~-----~~~~~~~~~~~la~~~~~~G~~~~A~----~~~ 209 (355)
T cd05804 151 VHAVAHVLEMQGRFKEGIAFMESWRDTWDC-----SSMLRGHNWWHLALFYLERGDYEAAL----AIY 209 (355)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHhhhhccCC-----CcchhHHHHHHHHHHHHHCCCHHHHH----HHH
Confidence 344599999999999999999999877643 3443 457889999999999999999 555
No 87
>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional
Probab=93.65 E-value=0.11 Score=54.51 Aligned_cols=54 Identities=20% Similarity=0.255 Sum_probs=43.7
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHcCChhhHh
Q 027539 129 RTLLESSKIALDKGKLEDAVNYGTKALARMIAVCGPYHRTTASTYSLLAVVLYHTGDFNQVR 190 (222)
Q Consensus 129 ~~lle~g~~~l~qG~~e~A~~L~~eAL~i~eqV~G~~HpevA~~y~~LA~vy~~~Gd~~eAi 190 (222)
......|.++...|++++|++.|.+++.+ +|+-+..+++||.++..+|++++|+
T Consensus 610 ~a~~~LA~~l~~lG~~deA~~~l~~AL~l--------~Pd~~~a~~nLG~aL~~~G~~eeAi 663 (987)
T PRK09782 610 NAYVARATIYRQRHNVPAAVSDLRAALEL--------EPNNSNYQAALGYALWDSGDIAQSR 663 (987)
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHh--------CCCCHHHHHHHHHHHHHCCCHHHHH
Confidence 34456688888888888888888888876 4666678889999999999999987
No 88
>PF12688 TPR_5: Tetratrico peptide repeat
Probab=93.60 E-value=0.31 Score=38.59 Aligned_cols=58 Identities=22% Similarity=0.351 Sum_probs=44.7
Q ss_pred HHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHcCChhhHh
Q 027539 128 GRTLLESSKIALDKGKLEDAVNYGTKALARMIAVCGPYHRTTASTYSLLAVVLYHTGDFNQVR 190 (222)
Q Consensus 128 a~~lle~g~~~l~qG~~e~A~~L~~eAL~i~eqV~G~~HpevA~~y~~LA~vy~~~Gd~~eAi 190 (222)
.+-.+..|.++.+.|++++|+.++++++.-+ |..+--...-..+|.+++.+|+++||+
T Consensus 38 ~~a~i~lastlr~LG~~deA~~~L~~~~~~~-----p~~~~~~~l~~f~Al~L~~~gr~~eAl 95 (120)
T PF12688_consen 38 RRALIQLASTLRNLGRYDEALALLEEALEEF-----PDDELNAALRVFLALALYNLGRPKEAL 95 (120)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-----CCccccHHHHHHHHHHHHHCCCHHHHH
Confidence 4567788999999999999999999887422 221114444456889999999999999
No 89
>TIGR00540 hemY_coli hemY protein. This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.
Probab=93.43 E-value=0.2 Score=46.67 Aligned_cols=65 Identities=9% Similarity=0.043 Sum_probs=48.1
Q ss_pred ccCchhHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHcCChhhHhhchHHhh
Q 027539 122 GCTSADGRTLLESSKIALDKGKLEDAVNYGTKALARMIAVCGPYHRTTASTYSLLAVVLYHTGDFNQVRQSSVVFQ 197 (222)
Q Consensus 122 ~p~s~~a~~lle~g~~~l~qG~~e~A~~L~~eAL~i~eqV~G~~HpevA~~y~~LA~vy~~~Gd~~eAi~~~~~~~ 197 (222)
.|..+++.-+...|++++.+|++++|.+.|+.+.++-. +|+... +..||.++.++|+.++|. .++
T Consensus 329 ~p~~~~~~ll~sLg~l~~~~~~~~~A~~~le~a~a~~~------~p~~~~-~~~La~ll~~~g~~~~A~----~~~ 393 (409)
T TIGR00540 329 VDDKPKCCINRALGQLLMKHGEFIEAADAFKNVAACKE------QLDAND-LAMAADAFDQAGDKAEAA----AMR 393 (409)
T ss_pred CCCChhHHHHHHHHHHHHHcccHHHHHHHHHHhHHhhc------CCCHHH-HHHHHHHHHHcCCHHHHH----HHH
Confidence 44455334555679999999999999999984333221 555544 448999999999999999 776
No 90
>PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A ....
Probab=93.41 E-value=0.23 Score=29.30 Aligned_cols=30 Identities=30% Similarity=0.306 Sum_probs=26.6
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHHHHH
Q 027539 129 RTLLESSKIALDKGKLEDAVNYGTKALARM 158 (222)
Q Consensus 129 ~~lle~g~~~l~qG~~e~A~~L~~eAL~i~ 158 (222)
+-.+..|.++...|++++|.+.|.+++.+-
T Consensus 2 ~~~~~lg~~y~~~~~~~~A~~~~~~a~~~~ 31 (34)
T PF13181_consen 2 EAYYNLGKIYEQLGDYEEALEYFEKALELN 31 (34)
T ss_dssp HHHHHHHHHHHHTTSHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhhC
Confidence 456778999999999999999999999874
No 91
>PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi. They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other [].
Probab=93.29 E-value=0.28 Score=46.48 Aligned_cols=60 Identities=25% Similarity=0.237 Sum_probs=50.2
Q ss_pred hHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHcCChhhHhhchH
Q 027539 127 DGRTLLESSKIALDKGKLEDAVNYGTKALARMIAVCGPYHRTTASTYSLLAVVLYHTGDFNQVRQSSV 194 (222)
Q Consensus 127 ~a~~lle~g~~~l~qG~~e~A~~L~~eAL~i~eqV~G~~HpevA~~y~~LA~vy~~~Gd~~eAi~~~~ 194 (222)
++.-+..+|+.++++|+++.|++..++|..+ -|+--.++..||.+|-.+||+++|+.-.+
T Consensus 233 d~~LL~~Qa~fLl~k~~~~lAL~iAk~av~l--------sP~~f~~W~~La~~Yi~~~d~e~ALlaLN 292 (395)
T PF09295_consen 233 DSELLNLQAEFLLSKKKYELALEIAKKAVEL--------SPSEFETWYQLAECYIQLGDFENALLALN 292 (395)
T ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHh--------CchhHHHHHHHHHHHHhcCCHHHHHHHHh
Confidence 3666777888899999999999999888865 58888999999999999999999984433
No 92
>KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription]
Probab=93.00 E-value=0.092 Score=53.80 Aligned_cols=82 Identities=16% Similarity=0.141 Sum_probs=60.4
Q ss_pred cccccCchhHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHcCChhhHhhchHHhhh
Q 027539 119 KHVGCTSADGRTLLESSKIALDKGKLEDAVNYGTKALARMIAVCGPYHRTTASTYSLLAVVLYHTGDFNQVRQSSVVFQC 198 (222)
Q Consensus 119 K~~~p~s~~a~~lle~g~~~l~qG~~e~A~~L~~eAL~i~eqV~G~~HpevA~~y~~LA~vy~~~Gd~~eAi~~~~~~~~ 198 (222)
++..+.+.+..=+++.+..+.+-|++++|+++|....+--. ++ .+..+..+|+.|..+|.+++|+ +|+
T Consensus 405 ~~n~~~~d~~dL~~d~a~al~~~~~~~~Al~~l~~i~~~~~--~~-----~~~vw~~~a~c~~~l~e~e~A~----e~y- 472 (895)
T KOG2076|consen 405 EDNVWVSDDVDLYLDLADALTNIGKYKEALRLLSPITNREG--YQ-----NAFVWYKLARCYMELGEYEEAI----EFY- 472 (895)
T ss_pred HhcCChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHhcCcc--cc-----chhhhHHHHHHHHHHhhHHHHH----HHH-
Confidence 34445667777788889999999999999988877654221 11 1678899999999999999999 777
Q ss_pred hhCCCCceEEEeeeechhc
Q 027539 199 QLGDSKSSIIITSFCTEVL 217 (222)
Q Consensus 199 ~~~~~~~a~~i~e~~~~~~ 217 (222)
+++++..--++++.
T Consensus 473 -----~kvl~~~p~~~D~R 486 (895)
T KOG2076|consen 473 -----EKVLILAPDNLDAR 486 (895)
T ss_pred -----HHHHhcCCCchhhh
Confidence 66666555444443
No 93
>KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=92.89 E-value=0.19 Score=47.48 Aligned_cols=65 Identities=11% Similarity=0.048 Sum_probs=56.2
Q ss_pred hhHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHhCCCChHHH-------HHHHHHHHHHHHcCChhhHh
Q 027539 126 ADGRTLLESSKIALDKGKLEDAVNYGTKALARMIAVCGPYHRTTA-------STYSLLAVVLYHTGDFNQVR 190 (222)
Q Consensus 126 ~~a~~lle~g~~~l~qG~~e~A~~L~~eAL~i~eqV~G~~HpevA-------~~y~~LA~vy~~~Gd~~eAi 190 (222)
..|...=|.|..+..+|++..|...|..|+..++...+..--+.. .|++|||++|.++++|.+|+
T Consensus 206 ~~A~~~ke~Gn~~fK~gk~~~A~~~Yerav~~l~~~~~~~~ee~~~~~~~k~~~~lNlA~c~lKl~~~~~Ai 277 (397)
T KOG0543|consen 206 EAADRKKERGNVLFKEGKFKLAKKRYERAVSFLEYRRSFDEEEQKKAEALKLACHLNLAACYLKLKEYKEAI 277 (397)
T ss_pred HHHHHHHHhhhHHHhhchHHHHHHHHHHHHHHhhccccCCHHHHHHHHHHHHHHhhHHHHHHHhhhhHHHHH
Confidence 456677788999999999999999999999999987776554443 58999999999999999999
No 94
>PF09986 DUF2225: Uncharacterized protein conserved in bacteria (DUF2225); InterPro: IPR018708 This conserved bacterial family has no known function.
Probab=92.64 E-value=0.42 Score=41.38 Aligned_cols=80 Identities=19% Similarity=0.182 Sum_probs=63.0
Q ss_pred CchhHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHhCCC-----ChHHHHHHHHHHHHHHHcCChhhHhhchHHhhh
Q 027539 124 TSADGRTLLESSKIALDKGKLEDAVNYGTKALARMIAVCGPY-----HRTTASTYSLLAVVLYHTGDFNQVRQSSVVFQC 198 (222)
Q Consensus 124 ~s~~a~~lle~g~~~l~qG~~e~A~~L~~eAL~i~eqV~G~~-----HpevA~~y~~LA~vy~~~Gd~~eAi~~~~~~~~ 198 (222)
.+..|.-.+..|=.+-.+|+.+....++.+|+..|++.|-.. --+-++.+..+|-+++.+|++++|. ..|..
T Consensus 114 ~s~~A~l~LrlAWlyR~~~~~~~E~~fl~~Al~~y~~a~~~e~~~~~~~~~~~l~YLigeL~rrlg~~~eA~---~~fs~ 190 (214)
T PF09986_consen 114 PSKKAGLCLRLAWLYRDLGDEENEKRFLRKALEFYEEAYENEDFPIEGMDEATLLYLIGELNRRLGNYDEAK---RWFSR 190 (214)
T ss_pred HHHHHHHHHHHHHHhhccCCHHHHHHHHHHHHHHHHHHHHhCcCCCCCchHHHHHHHHHHHHHHhCCHHHHH---HHHHH
Confidence 346788888889999999999999999999999999988433 2355788889999999999999999 33333
Q ss_pred hhCCCCce
Q 027539 199 QLGDSKSS 206 (222)
Q Consensus 199 ~~~~~~~a 206 (222)
-.|+.+.+
T Consensus 191 vi~~~~~s 198 (214)
T PF09986_consen 191 VIGSKKAS 198 (214)
T ss_pred HHcCCCCC
Confidence 33444433
No 95
>PRK15331 chaperone protein SicA; Provisional
Probab=92.51 E-value=0.44 Score=40.09 Aligned_cols=59 Identities=17% Similarity=0.140 Sum_probs=48.8
Q ss_pred CchhHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHcCChhhHh
Q 027539 124 TSADGRTLLESSKIALDKGKLEDAVNYGTKALARMIAVCGPYHRTTASTYSLLAVVLYHTGDFNQVR 190 (222)
Q Consensus 124 ~s~~a~~lle~g~~~l~qG~~e~A~~L~~eAL~i~eqV~G~~HpevA~~y~~LA~vy~~~Gd~~eAi 190 (222)
+..+-+.++..|-.+.++|++++|..+|. .|. +|++..|+. ..-||.++..+|+|++|+
T Consensus 33 s~~~le~iY~~Ay~~y~~Gk~~eA~~~F~-~L~----~~d~~n~~Y---~~GLaa~~Q~~k~y~~Ai 91 (165)
T PRK15331 33 PQDMMDGLYAHAYEFYNQGRLDEAETFFR-FLC----IYDFYNPDY---TMGLAAVCQLKKQFQKAC 91 (165)
T ss_pred CHHHHHHHHHHHHHHHHCCCHHHHHHHHH-HHH----HhCcCcHHH---HHHHHHHHHHHHHHHHHH
Confidence 44556777888899999999999999984 333 378888885 688999999999999999
No 96
>KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=92.32 E-value=0.082 Score=51.45 Aligned_cols=57 Identities=21% Similarity=0.229 Sum_probs=48.5
Q ss_pred hhHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHcCChhhHh
Q 027539 126 ADGRTLLESSKIALDKGKLEDAVNYGTKALARMIAVCGPYHRTTASTYSLLAVVLYHTGDFNQVR 190 (222)
Q Consensus 126 ~~a~~lle~g~~~l~qG~~e~A~~L~~eAL~i~eqV~G~~HpevA~~y~~LA~vy~~~Gd~~eAi 190 (222)
..|-++=+.|..+..+|+|++|+.+|++|+.+- |+-...|+|.|..|-.+||+.+-+
T Consensus 113 k~A~~lK~~GN~~f~~kkY~eAIkyY~~AI~l~--------p~epiFYsNraAcY~~lgd~~~Vi 169 (606)
T KOG0547|consen 113 KYAAALKTKGNKFFRNKKYDEAIKYYTQAIELC--------PDEPIFYSNRAACYESLGDWEKVI 169 (606)
T ss_pred HHHHHHHhhhhhhhhcccHHHHHHHHHHHHhcC--------CCCchhhhhHHHHHHHHhhHHHHH
Confidence 456677778999999999999999999999764 333789999999999999998877
No 97
>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=92.07 E-value=0.28 Score=49.58 Aligned_cols=54 Identities=11% Similarity=-0.082 Sum_probs=43.1
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHcCChhhHhhchHHhh
Q 027539 132 LESSKIALDKGKLEDAVNYGTKALARMIAVCGPYHRTTASTYSLLAVVLYHTGDFNQVRQSSVVFQ 197 (222)
Q Consensus 132 le~g~~~l~qG~~e~A~~L~~eAL~i~eqV~G~~HpevA~~y~~LA~vy~~~Gd~~eAi~~~~~~~ 197 (222)
.+.|.+...++++++|+..+.+++. .-|+-+..++++|.++.++|++++|+ +.+
T Consensus 124 ~~~a~~L~~~~~~eeA~~~~~~~l~--------~~p~~~~~~~~~a~~l~~~g~~~~A~----~~y 177 (694)
T PRK15179 124 ILMLRGVKRQQGIEAGRAEIELYFS--------GGSSSAREILLEAKSWDEIGQSEQAD----ACF 177 (694)
T ss_pred HHHHHHHHHhccHHHHHHHHHHHhh--------cCCCCHHHHHHHHHHHHHhcchHHHH----HHH
Confidence 3347777888888888888777774 56888888899999999999999998 666
No 98
>PF13428 TPR_14: Tetratricopeptide repeat
Probab=92.03 E-value=0.34 Score=30.92 Aligned_cols=27 Identities=22% Similarity=0.176 Sum_probs=24.0
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHHH
Q 027539 131 LLESSKIALDKGKLEDAVNYGTKALAR 157 (222)
Q Consensus 131 lle~g~~~l~qG~~e~A~~L~~eAL~i 157 (222)
.+..|+.+..+|++++|..+|++++..
T Consensus 4 ~~~la~~~~~~G~~~~A~~~~~~~l~~ 30 (44)
T PF13428_consen 4 WLALARAYRRLGQPDEAERLLRRALAL 30 (44)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 455699999999999999999999974
No 99
>KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism]
Probab=91.99 E-value=0.35 Score=50.18 Aligned_cols=81 Identities=14% Similarity=0.085 Sum_probs=67.4
Q ss_pred cccccccccCchhHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHcCChhhHhhchH
Q 027539 115 VPVCKHVGCTSADGRTLLESSKIALDKGKLEDAVNYGTKALARMIAVCGPYHRTTASTYSLLAVVLYHTGDFNQVRQSSV 194 (222)
Q Consensus 115 ~PvVK~~~p~s~~a~~lle~g~~~l~qG~~e~A~~L~~eAL~i~eqV~G~~HpevA~~y~~LA~vy~~~Gd~~eAi~~~~ 194 (222)
.=+.|-..+...|++..++.|+++.++.-.. ++..|+.|+.+++..-+++-||+ +|++|..++.+|+++.|.
T Consensus 401 ~~l~K~~~~~~~d~~a~l~laql~e~~d~~~-sL~~~~~A~d~L~~~~~~ip~E~---LNNvaslhf~~g~~~~A~---- 472 (1018)
T KOG2002|consen 401 NVLGKVLEQTPVDSEAWLELAQLLEQTDPWA-SLDAYGNALDILESKGKQIPPEV---LNNVASLHFRLGNIEKAL---- 472 (1018)
T ss_pred HHHHHHHhcccccHHHHHHHHHHHHhcChHH-HHHHHHHHHHHHHHcCCCCCHHH---HHhHHHHHHHhcChHHHH----
Confidence 3356667777888888999999999877555 59999999999999988888775 789999999999999999
Q ss_pred HhhhhhCCCCceEEE
Q 027539 195 VFQCQLGDSKSSIII 209 (222)
Q Consensus 195 ~~~~~~~~~~~a~~i 209 (222)
+.+ ++|+.+
T Consensus 473 ~~f------~~A~~~ 481 (1018)
T KOG2002|consen 473 EHF------KSALGK 481 (1018)
T ss_pred HHH------HHHhhh
Confidence 666 566554
No 100
>PRK04841 transcriptional regulator MalT; Provisional
Probab=91.95 E-value=0.38 Score=48.55 Aligned_cols=58 Identities=9% Similarity=0.060 Sum_probs=51.0
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHcCChhhHh
Q 027539 131 LLESSKIALDKGKLEDAVNYGTKALARMIAVCGPYHRTTASTYSLLAVVLYHTGDFNQVR 190 (222)
Q Consensus 131 lle~g~~~l~qG~~e~A~~L~~eAL~i~eqV~G~~HpevA~~y~~LA~vy~~~Gd~~eAi 190 (222)
....|+++..+|++++|..++.+++...++ .|. .++.+..+..+|.+|..+|+.++|.
T Consensus 694 ~~~~a~~~~~~g~~~~A~~~l~~al~~~~~-~g~-~~~~a~~~~~la~a~~~~G~~~~A~ 751 (903)
T PRK04841 694 WRNIARAQILLGQFDEAEIILEELNENARS-LRL-MSDLNRNLILLNQLYWQQGRKSEAQ 751 (903)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHHH-hCc-hHHHHHHHHHHHHHHHHcCCHHHHH
Confidence 456789999999999999999999998655 554 3589999999999999999999999
No 101
>PRK10049 pgaA outer membrane protein PgaA; Provisional
Probab=91.80 E-value=0.29 Score=49.44 Aligned_cols=58 Identities=16% Similarity=0.088 Sum_probs=41.9
Q ss_pred ccCchhHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHcCChhhHh
Q 027539 122 GCTSADGRTLLESSKIALDKGKLEDAVNYGTKALARMIAVCGPYHRTTASTYSLLAVVLYHTGDFNQVR 190 (222)
Q Consensus 122 ~p~s~~a~~lle~g~~~l~qG~~e~A~~L~~eAL~i~eqV~G~~HpevA~~y~~LA~vy~~~Gd~~eAi 190 (222)
.|.++++.. ..|.++..+|++++|++++.+++.. +|+-+. +..||.++..+|++++|+
T Consensus 79 ~P~~~~a~~--~la~~l~~~g~~~eA~~~l~~~l~~--------~P~~~~-~~~la~~l~~~g~~~~Al 136 (765)
T PRK10049 79 EPQNDDYQR--GLILTLADAGQYDEALVKAKQLVSG--------APDKAN-LLALAYVYKRAGRHWDEL 136 (765)
T ss_pred CCCCHHHHH--HHHHHHHHCCCHHHHHHHHHHHHHh--------CCCCHH-HHHHHHHHHHCCCHHHHH
Confidence 345555543 4577888888888888888887765 444455 778888888888888887
No 102
>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala. N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], [].
Probab=91.55 E-value=0.73 Score=45.09 Aligned_cols=72 Identities=25% Similarity=0.223 Sum_probs=60.0
Q ss_pred CCCCcCCcccccccccccccCchhHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHc
Q 027539 104 NPFTRDDIVSMVPVCKHVGCTSADGRTLLESSKIALDKGKLEDAVNYGTKALARMIAVCGPYHRTTASTYSLLAVVLYHT 183 (222)
Q Consensus 104 ~~F~~~DI~ni~PvVK~~~p~s~~a~~lle~g~~~l~qG~~e~A~~L~~eAL~i~eqV~G~~HpevA~~y~~LA~vy~~~ 183 (222)
.+|...| -....|.++..-.++=.|+.+...|++++|++++++|+.. -|.....|..-|++|-++
T Consensus 177 ~~~~~~~-------~~~~~~p~~~lw~~~~lAqhyd~~g~~~~Al~~Id~aI~h--------tPt~~ely~~KarilKh~ 241 (517)
T PF12569_consen 177 GSFSNGD-------DEEKEPPSTLLWTLYFLAQHYDYLGDYEKALEYIDKAIEH--------TPTLVELYMTKARILKHA 241 (517)
T ss_pred CCCCCcc-------ccccCCchHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhc--------CCCcHHHHHHHHHHHHHC
Confidence 4666666 3345556666666667799999999999999999999976 588899999999999999
Q ss_pred CChhhHh
Q 027539 184 GDFNQVR 190 (222)
Q Consensus 184 Gd~~eAi 190 (222)
|++.+|.
T Consensus 242 G~~~~Aa 248 (517)
T PF12569_consen 242 GDLKEAA 248 (517)
T ss_pred CCHHHHH
Confidence 9999999
No 103
>PRK10049 pgaA outer membrane protein PgaA; Provisional
Probab=91.35 E-value=0.44 Score=48.17 Aligned_cols=53 Identities=15% Similarity=-0.079 Sum_probs=45.8
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHcCChhhHh
Q 027539 130 TLLESSKIALDKGKLEDAVNYGTKALARMIAVCGPYHRTTASTYSLLAVVLYHTGDFNQVR 190 (222)
Q Consensus 130 ~lle~g~~~l~qG~~e~A~~L~~eAL~i~eqV~G~~HpevA~~y~~LA~vy~~~Gd~~eAi 190 (222)
-....|..+..+|++++|++++.+++.. +|+-...+..+|.++..+|++++|+
T Consensus 361 a~~~~a~~l~~~g~~~eA~~~l~~al~~--------~P~n~~l~~~lA~l~~~~g~~~~A~ 413 (765)
T PRK10049 361 GQSLLSQVAKYSNDLPQAEMRARELAYN--------APGNQGLRIDYASVLQARGWPRAAE 413 (765)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHh--------CCCCHHHHHHHHHHHHhcCCHHHHH
Confidence 3455689999999999999999999876 4555678999999999999999999
No 104
>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B.
Probab=91.15 E-value=0.22 Score=43.38 Aligned_cols=92 Identities=15% Similarity=0.108 Sum_probs=41.7
Q ss_pred hhHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHH----------HhCCC----------------ChHHHHHHHHHHHH
Q 027539 126 ADGRTLLESSKIALDKGKLEDAVNYGTKALARMIA----------VCGPY----------------HRTTASTYSLLAVV 179 (222)
Q Consensus 126 ~~a~~lle~g~~~l~qG~~e~A~~L~~eAL~i~eq----------V~G~~----------------HpevA~~y~~LA~v 179 (222)
.++.-++..|..+...|+.++|++.|.+|+.+.-. ++-.. .|+-...+..+|.+
T Consensus 144 ~~~~~~~~~a~~~~~~G~~~~A~~~~~~al~~~P~~~~~~~~l~~~li~~~~~~~~~~~l~~~~~~~~~~~~~~~~la~~ 223 (280)
T PF13429_consen 144 DSARFWLALAEIYEQLGDPDKALRDYRKALELDPDDPDARNALAWLLIDMGDYDEAREALKRLLKAAPDDPDLWDALAAA 223 (280)
T ss_dssp T-HHHHHHHHHHHHHCCHHHHHHHHHHHHHHH-TT-HHHHHHHHHHHCTTCHHHHHHHHHHHHHHH-HTSCCHCHHHHHH
T ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHCCChHHHHHHHHHHHHHCcCHHHHHHHHHHH
Confidence 44555667789999999999999999998873210 00000 01112234567777
Q ss_pred HHHcCChhhHhhch-----------------HHhhhhhCCCCceEEEeeeechhc
Q 027539 180 LYHTGDFNQVRQSS-----------------VVFQCQLGDSKSSIIITSFCTEVL 217 (222)
Q Consensus 180 y~~~Gd~~eAi~~~-----------------~~~~~~~~~~~~a~~i~e~~~~~~ 217 (222)
|..+|++++|+.+. .....+.|+.+.|..+..+++.-|
T Consensus 224 ~~~lg~~~~Al~~~~~~~~~~p~d~~~~~~~a~~l~~~g~~~~A~~~~~~~~~~l 278 (280)
T PF13429_consen 224 YLQLGRYEEALEYLEKALKLNPDDPLWLLAYADALEQAGRKDEALRLRRQALRLL 278 (280)
T ss_dssp HHHHT-HHHHHHHHHHHHHHSTT-HHHHHHHHHHHT-------------------
T ss_pred hcccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence 77778877777221 122235666777777666665443
No 105
>KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription]
Probab=91.06 E-value=0.53 Score=48.49 Aligned_cols=60 Identities=18% Similarity=0.282 Sum_probs=52.7
Q ss_pred chhHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHcCChhhHhhc
Q 027539 125 SADGRTLLESSKIALDKGKLEDAVNYGTKALARMIAVCGPYHRTTASTYSLLAVVLYHTGDFNQVRQS 192 (222)
Q Consensus 125 s~~a~~lle~g~~~l~qG~~e~A~~L~~eAL~i~eqV~G~~HpevA~~y~~LA~vy~~~Gd~~eAi~~ 192 (222)
++.++.++-.|......|++++|.+++.|.+.. -|-....|..||.||-++||.+.|..|
T Consensus 136 ~~~l~~ll~eAN~lfarg~~eeA~~i~~EvIkq--------dp~~~~ay~tL~~IyEqrGd~eK~l~~ 195 (895)
T KOG2076|consen 136 APELRQLLGEANNLFARGDLEEAEEILMEVIKQ--------DPRNPIAYYTLGEIYEQRGDIEKALNF 195 (895)
T ss_pred CHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHh--------CccchhhHHHHHHHHHHcccHHHHHHH
Confidence 467889999999999999999999999998853 566678999999999999999999844
No 106
>PF12862 Apc5: Anaphase-promoting complex subunit 5
Probab=90.87 E-value=0.54 Score=35.01 Aligned_cols=53 Identities=15% Similarity=0.112 Sum_probs=43.5
Q ss_pred HHhcCChHHHHHHHHHHHHHHHHHhCCC-ChHHHHHHHHHHHHHHHcCChhhHh
Q 027539 138 ALDKGKLEDAVNYGTKALARMIAVCGPY-HRTTASTYSLLAVVLYHTGDFNQVR 190 (222)
Q Consensus 138 ~l~qG~~e~A~~L~~eAL~i~eqV~G~~-HpevA~~y~~LA~vy~~~Gd~~eAi 190 (222)
.+..|++.+|.+.+.+......+-.+.. ....+.+..++|.+++..|++++|+
T Consensus 8 ~~~~~dy~~A~d~L~~~fD~~~~~~~~~~~~~~~~all~lA~~~~~~G~~~~A~ 61 (94)
T PF12862_consen 8 ALRSGDYSEALDALHRYFDYAKQSNNSSSNSGLAYALLNLAELHRRFGHYEEAL 61 (94)
T ss_pred HHHcCCHHHHHHHHHHHHHHHhhcccchhhHHHHHHHHHHHHHHHHhCCHHHHH
Confidence 5678999999999999998876655544 2346667888999999999999999
No 107
>COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion]
Probab=90.69 E-value=0.69 Score=41.49 Aligned_cols=59 Identities=25% Similarity=0.333 Sum_probs=40.4
Q ss_pred CchhHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHcCChhhHh
Q 027539 124 TSADGRTLLESSKIALDKGKLEDAVNYGTKALARMIAVCGPYHRTTASTYSLLAVVLYHTGDFNQVR 190 (222)
Q Consensus 124 ~s~~a~~lle~g~~~l~qG~~e~A~~L~~eAL~i~eqV~G~~HpevA~~y~~LA~vy~~~Gd~~eAi 190 (222)
...|.+-+...|+.++..|++.+|...+.+|.. .-|.=++.++.||.+|.+.|++++|.
T Consensus 96 ~~~d~~ll~~~gk~~~~~g~~~~A~~~~rkA~~--------l~p~d~~~~~~lgaaldq~Gr~~~Ar 154 (257)
T COG5010 96 YPKDRELLAAQGKNQIRNGNFGEAVSVLRKAAR--------LAPTDWEAWNLLGAALDQLGRFDEAR 154 (257)
T ss_pred CcccHHHHHHHHHHHHHhcchHHHHHHHHHHhc--------cCCCChhhhhHHHHHHHHccChhHHH
Confidence 334444454568888888888888888877774 34556666777777777777777766
No 108
>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional
Probab=90.55 E-value=0.48 Score=39.51 Aligned_cols=54 Identities=6% Similarity=-0.098 Sum_probs=46.5
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHcCChhhHh
Q 027539 129 RTLLESSKIALDKGKLEDAVNYGTKALARMIAVCGPYHRTTASTYSLLAVVLYHTGDFNQVR 190 (222)
Q Consensus 129 ~~lle~g~~~l~qG~~e~A~~L~~eAL~i~eqV~G~~HpevA~~y~~LA~vy~~~Gd~~eAi 190 (222)
+-.+.-|-++-.+|++++|++.|..|+.+ .|+=+..+.++|.+|..+|+.++|.
T Consensus 70 ~y~~gLG~~~Q~~g~~~~AI~aY~~A~~L--------~~ddp~~~~~ag~c~L~lG~~~~A~ 123 (157)
T PRK15363 70 DYWFRLGECCQAQKHWGEAIYAYGRAAQI--------KIDAPQAPWAAAECYLACDNVCYAI 123 (157)
T ss_pred HHHHHHHHHHHHHhhHHHHHHHHHHHHhc--------CCCCchHHHHHHHHHHHcCCHHHHH
Confidence 44556699999999999999999998764 4566678999999999999999999
No 109
>PRK10866 outer membrane biogenesis protein BamD; Provisional
Probab=90.51 E-value=0.71 Score=40.46 Aligned_cols=49 Identities=10% Similarity=-0.036 Sum_probs=44.6
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHcC
Q 027539 131 LLESSKIALDKGKLEDAVNYGTKALARMIAVCGPYHRTTASTYSLLAVVLYHTG 184 (222)
Q Consensus 131 lle~g~~~l~qG~~e~A~~L~~eAL~i~eqV~G~~HpevA~~y~~LA~vy~~~G 184 (222)
.+..|.++..+|++++|...+++.+..+ |.||++..++..+|..++.+|
T Consensus 72 ~l~la~ayy~~~~y~~A~~~~e~fi~~~-----P~~~~~~~a~Y~~g~~~~~~~ 120 (243)
T PRK10866 72 QLDLIYAYYKNADLPLAQAAIDRFIRLN-----PTHPNIDYVLYMRGLTNMALD 120 (243)
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHhC-----cCCCchHHHHHHHHHhhhhcc
Confidence 5678999999999999999999998887 899999999999999987776
No 110
>smart00028 TPR Tetratricopeptide repeats. Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.
Probab=90.47 E-value=0.14 Score=27.63 Aligned_cols=20 Identities=15% Similarity=0.265 Sum_probs=18.6
Q ss_pred HHHHHHHHHHHHcCChhhHh
Q 027539 171 STYSLLAVVLYHTGDFNQVR 190 (222)
Q Consensus 171 ~~y~~LA~vy~~~Gd~~eAi 190 (222)
.++.++|.+|..+|++++|+
T Consensus 2 ~~~~~~a~~~~~~~~~~~a~ 21 (34)
T smart00028 2 EALYNLGNAYLKLGDYDEAL 21 (34)
T ss_pred hHHHHHHHHHHHHhhHHHHH
Confidence 56889999999999999999
No 111
>PF04212 MIT: MIT (microtubule interacting and transport) domain; InterPro: IPR007330 The MIT domain is found in vacuolar sorting proteins, spastin (probable ATPase involved in the assembly or function of nuclear protein complexes), and a sorting nexin, which may play a role in intracellular trafficking.; PDB: 2DL1_A 2JQK_A 1WR0_A 2CPT_A 2JQH_A 2V6Y_A 2JQ9_A 2K3W_A 1YXR_A 3EAB_E ....
Probab=90.26 E-value=1 Score=31.66 Aligned_cols=54 Identities=11% Similarity=0.105 Sum_probs=41.1
Q ss_pred hHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHhCC-CChHHHHHHHHHHHHH
Q 027539 127 DGRTLLESSKIALDKGKLEDAVNYGTKALARMIAVCGP-YHRTTASTYSLLAVVL 180 (222)
Q Consensus 127 ~a~~lle~g~~~l~qG~~e~A~~L~~eAL~i~eqV~G~-~HpevA~~y~~LA~vy 180 (222)
.|.++...|...-++|++++|+++|.+|+..+.+.... -.|..-..+..-..-|
T Consensus 4 ~A~~~~~~Av~~D~~g~~~~A~~~Y~~ai~~l~~~~~~~~~~~~~~~l~~k~~~y 58 (69)
T PF04212_consen 4 KAIELIKKAVEADEAGNYEEALELYKEAIEYLMQALKSESNPERRQALRQKMKEY 58 (69)
T ss_dssp HHHHHHHHHHHHHHTTSHHHHHHHHHHHHHHHHHHHHHSTTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHH
Confidence 46778888999999999999999999999999988753 3555555555444433
No 112
>KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=90.16 E-value=0.43 Score=47.11 Aligned_cols=77 Identities=21% Similarity=0.151 Sum_probs=59.9
Q ss_pred ccccccccCch-hHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHcCChhhHhhchH
Q 027539 116 PVCKHVGCTSA-DGRTLLESSKIALDKGKLEDAVNYGTKALARMIAVCGPYHRTTASTYSLLAVVLYHTGDFNQVRQSSV 194 (222)
Q Consensus 116 PvVK~~~p~s~-~a~~lle~g~~~l~qG~~e~A~~L~~eAL~i~eqV~G~~HpevA~~y~~LA~vy~~~Gd~~eAi~~~~ 194 (222)
-++|...+.++ -.-.+.+.|.++...+++++|+..|++||.+ -|--+..|..+|-+|..+|.++.|+
T Consensus 442 ~~ik~~~~e~~~w~p~~~NLGH~~Rkl~~~~eAI~~~q~aL~l--------~~k~~~~~asig~iy~llgnld~Ai---- 509 (611)
T KOG1173|consen 442 EVIKSVLNEKIFWEPTLNNLGHAYRKLNKYEEAIDYYQKALLL--------SPKDASTHASIGYIYHLLGNLDKAI---- 509 (611)
T ss_pred HHhhhccccccchhHHHHhHHHHHHHHhhHHHHHHHHHHHHHc--------CCCchhHHHHHHHHHHHhcChHHHH----
Confidence 34555555554 2223456689999999999999999999965 4556788999999999999999999
Q ss_pred HhhhhhCCCCceEEEe
Q 027539 195 VFQCQLGDSKSSIIIT 210 (222)
Q Consensus 195 ~~~~~~~~~~~a~~i~ 210 (222)
+++ -+||.|.
T Consensus 510 d~f------hKaL~l~ 519 (611)
T KOG1173|consen 510 DHF------HKALALK 519 (611)
T ss_pred HHH------HHHHhcC
Confidence 888 4777664
No 113
>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B.
Probab=90.13 E-value=0.28 Score=42.79 Aligned_cols=62 Identities=21% Similarity=0.185 Sum_probs=36.7
Q ss_pred ccCchhHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHcCChhhHhhchHHhh
Q 027539 122 GCTSADGRTLLESSKIALDKGKLEDAVNYGTKALARMIAVCGPYHRTTASTYSLLAVVLYHTGDFNQVRQSSVVFQ 197 (222)
Q Consensus 122 ~p~s~~a~~lle~g~~~l~qG~~e~A~~L~~eAL~i~eqV~G~~HpevA~~y~~LA~vy~~~Gd~~eAi~~~~~~~ 197 (222)
.|.++.....+ |.++...|++++|+++|.+++. .+|+=...+..+|.++...|++++|. ...
T Consensus 210 ~~~~~~~~~~l--a~~~~~lg~~~~Al~~~~~~~~--------~~p~d~~~~~~~a~~l~~~g~~~~A~----~~~ 271 (280)
T PF13429_consen 210 APDDPDLWDAL--AAAYLQLGRYEEALEYLEKALK--------LNPDDPLWLLAYADALEQAGRKDEAL----RLR 271 (280)
T ss_dssp -HTSCCHCHHH--HHHHHHHT-HHHHHHHHHHHHH--------HSTT-HHHHHHHHHHHT----------------
T ss_pred CcCHHHHHHHH--HHHhcccccccccccccccccc--------cccccccccccccccccccccccccc----ccc
Confidence 35555555554 8889999999999999998774 35666677779999999999999999 776
No 114
>PF09311 Rab5-bind: Rabaptin-like protein; InterPro: IPR015390 This domain is predominantly found in Rabaptin and allows for binding to the GTPase Rab5. This interaction is necessary and sufficient for Rab5-dependent recruitment of Rabaptin5 to early endosomal membranes []. ; PDB: 3NF1_A 3CEQ_B 3EDT_H 1X79_C 1TU3_F.
Probab=90.11 E-value=1 Score=37.95 Aligned_cols=44 Identities=27% Similarity=0.190 Sum_probs=37.3
Q ss_pred hhHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHhCCCChHH
Q 027539 126 ADGRTLLESSKIALDKGKLEDAVNYGTKALARMIAVCGPYHRTT 169 (222)
Q Consensus 126 ~~a~~lle~g~~~l~qG~~e~A~~L~~eAL~i~eqV~G~~Hpev 169 (222)
..-+.+-+.--.+..+|+++.|.++.++||.-+++.+|..||+|
T Consensus 138 ~rl~tL~nlv~q~~~q~r~evav~~~KqalEdl~~~~~~~~~~v 181 (181)
T PF09311_consen 138 ARLRTLHNLVIQYESQGRYEVAVPLCKQALEDLEKESGHKHPDV 181 (181)
T ss_dssp HHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHHH-SSSHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhhhcccCC
Confidence 55566766677799999999999999999999999999999996
No 115
>PF10579 Rapsyn_N: Rapsyn N-terminal myristoylation and linker region; InterPro: IPR019568 Neuromuscular junction formation relies upon the clustering of acetylcholine receptors and other proteins in the muscle membrane. Rapsyn is a peripheral membrane protein that is selectively concentrated at the neuromuscular junction and is essential for the formation of synaptic acetylcholine receptor aggregates. Acetylcholine receptors fail to aggregate beneath nerve terminals in mice where rapsyn has been knocked out. The N-terminal six amino acids of rapsyn are its myristoylation site, and myristoylation is necessary for the targeting of the protein to the membrane []. ; GO: 0008270 zinc ion binding, 0033130 acetylcholine receptor binding, 0007268 synaptic transmission, 0005856 cytoskeleton, 0030054 cell junction, 0045211 postsynaptic membrane
Probab=90.03 E-value=1.1 Score=33.49 Aligned_cols=62 Identities=11% Similarity=0.154 Sum_probs=51.3
Q ss_pred hHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHcCChhhHhhch
Q 027539 127 DGRTLLESSKIALDKGKLEDAVNYGTKALARMIAVCGPYHRTTASTYSLLAVVLYHTGDFNQVRQSS 193 (222)
Q Consensus 127 ~a~~lle~g~~~l~qG~~e~A~~L~~eAL~i~eqV~G~~HpevA~~y~~LA~vy~~~Gd~~eAi~~~ 193 (222)
.++.-+|.|--..++.+.++|+.....+|...-+ -|+--..+..|+++|...|+|.+++.|+
T Consensus 5 ~ak~~ie~GlkLY~~~~~~~Al~~W~~aL~k~~~-----~~~rf~~lG~l~qA~~e~Gkyr~~L~fA 66 (80)
T PF10579_consen 5 QAKQQIEKGLKLYHQNETQQALQKWRKALEKITD-----REDRFRVLGYLIQAHMEWGKYREMLAFA 66 (80)
T ss_pred HHHHHHHHHHHHhccchHHHHHHHHHHHHhhcCC-----hHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4677889998888999999999888888876543 4577788889999999999999999554
No 116
>cd02681 MIT_calpain7_1 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in the nuclear thiol protease PalBH. The molecular function of the MIT domain is unclear.
Probab=89.40 E-value=5.1 Score=29.33 Aligned_cols=48 Identities=19% Similarity=0.227 Sum_probs=37.8
Q ss_pred hHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHH--HhCCCChHHHHHHH
Q 027539 127 DGRTLLESSKIALDKGKLEDAVNYGTKALARMIA--VCGPYHRTTASTYS 174 (222)
Q Consensus 127 ~a~~lle~g~~~l~qG~~e~A~~L~~eAL~i~eq--V~G~~HpevA~~y~ 174 (222)
.|.++...|--.-++|++++|+.+|.+|+..+.. .+|...|..-..++
T Consensus 5 ~Ai~~a~~Ave~D~~g~y~eA~~~Y~~aie~l~~~~~~~~~n~~~k~~ir 54 (76)
T cd02681 5 DAVQFARLAVQRDQEGRYSEAVFYYKEAAQLLIYAEMAGTLNDSHLKTIQ 54 (76)
T ss_pred HHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHH
Confidence 4566777777888899999999999999999998 66655555555443
No 117
>PF07721 TPR_4: Tetratricopeptide repeat; InterPro: IPR011717 This entry includes tetratricopeptide-like repeats not detected by the IPR001440 from INTERPRO, IPR013105 from INTERPRO and IPR011716 from INTERPRO models. The tetratricopeptide repeat (TPR) motif is a protein-protein interaction module found in multiple copies in a number of functionally different proteins that facilitates specific interactions with a partner protein(s) [].; GO: 0042802 identical protein binding
Probab=89.38 E-value=0.38 Score=27.63 Aligned_cols=20 Identities=25% Similarity=0.250 Sum_probs=18.4
Q ss_pred HHHHHHHHHHHHcCChhhHh
Q 027539 171 STYSLLAVVLYHTGDFNQVR 190 (222)
Q Consensus 171 ~~y~~LA~vy~~~Gd~~eAi 190 (222)
.+..+||.++..+||+++|.
T Consensus 2 ~a~~~la~~~~~~G~~~eA~ 21 (26)
T PF07721_consen 2 RARLALARALLAQGDPDEAE 21 (26)
T ss_pred HHHHHHHHHHHHcCCHHHHH
Confidence 46789999999999999998
No 118
>cd02683 MIT_1 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in proteins with unknown function, co-occuring with an as yet undescribed domain. The molecular function of the MIT domain is unclear.
Probab=89.13 E-value=3.8 Score=29.90 Aligned_cols=57 Identities=9% Similarity=0.136 Sum_probs=45.4
Q ss_pred chhHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHh-CCCChHHHHHHHHHHHHHH
Q 027539 125 SADGRTLLESSKIALDKGKLEDAVNYGTKALARMIAVC-GPYHRTTASTYSLLAVVLY 181 (222)
Q Consensus 125 s~~a~~lle~g~~~l~qG~~e~A~~L~~eAL~i~eqV~-G~~HpevA~~y~~LA~vy~ 181 (222)
+..|.+++..|...-..|++++|+.+|.+|+..+.++. +.-.|..-..|..--.-|.
T Consensus 3 ~~~a~~l~~~Ave~D~~g~y~eAl~~Y~~aie~l~~~lk~e~d~~~k~~~r~ki~eY~ 60 (77)
T cd02683 3 ELAAKEVLKRAVELDQEGRFQEALVCYQEGIDLLMQVLKGTKDEAKKKNLRQKISEYM 60 (77)
T ss_pred hHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHH
Confidence 45677888889889999999999999999999999965 6666677776665544443
No 119
>PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis []. It is also involved in sporulation [].
Probab=88.78 E-value=2.3 Score=37.65 Aligned_cols=66 Identities=21% Similarity=0.167 Sum_probs=57.2
Q ss_pred chhHHHHHHHHHHHHhcC-ChHHHHHHHHHHHHHHHH-H-hCCCChHH----HHHHHHHHHHHHHcCChhhHh
Q 027539 125 SADGRTLLESSKIALDKG-KLEDAVNYGTKALARMIA-V-CGPYHRTT----ASTYSLLAVVLYHTGDFNQVR 190 (222)
Q Consensus 125 s~~a~~lle~g~~~l~qG-~~e~A~~L~~eAL~i~eq-V-~G~~Hpev----A~~y~~LA~vy~~~Gd~~eAi 190 (222)
...++-+++.|...+.++ ++++|...+++|..+.++ . .+..||+. ..+++.||++|...|+++...
T Consensus 32 ~~La~~~yn~G~~l~~~~~~~~~a~~wL~~a~~~l~~~~~~~~~~~~~~elr~~iL~~La~~~l~~~~~~~~~ 104 (278)
T PF08631_consen 32 EELARVCYNIGKSLLSKKDKYEEAVKWLQRAYDILEKPGKMDKLSPDGSELRLSILRLLANAYLEWDTYESVE 104 (278)
T ss_pred HHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhhhhccccCCcHHHHHHHHHHHHHHHHHcCCChHHHH
Confidence 467888999999999999 999999999999999988 3 35777777 789999999999999876544
No 120
>cd02678 MIT_VPS4 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in intracellular protein transport proteins of the AAA-ATPase family. The molecular function of the MIT domain is unclear.
Probab=88.65 E-value=4.5 Score=29.01 Aligned_cols=55 Identities=11% Similarity=0.075 Sum_probs=44.8
Q ss_pred hHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHh-CCCChHHHHHHHHHHHHHH
Q 027539 127 DGRTLLESSKIALDKGKLEDAVNYGTKALARMIAVC-GPYHRTTASTYSLLAVVLY 181 (222)
Q Consensus 127 ~a~~lle~g~~~l~qG~~e~A~~L~~eAL~i~eqV~-G~~HpevA~~y~~LA~vy~ 181 (222)
.|.+++..|.-.-..|++++|+++|.+|+..+.+.. ..-.|.....+..-..=|.
T Consensus 5 ~A~~l~~~Av~~D~~g~y~eA~~~Y~~aie~l~~~~k~e~~~~~k~~~~~k~~eyl 60 (75)
T cd02678 5 KAIELVKKAIEEDNAGNYEEALRLYQHALEYFMHALKYEKNPKSKESIRAKCTEYL 60 (75)
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHH
Confidence 466788888888899999999999999999999976 5567777777776666554
No 121
>PRK10747 putative protoheme IX biogenesis protein; Provisional
Probab=88.46 E-value=1.5 Score=40.68 Aligned_cols=56 Identities=18% Similarity=0.179 Sum_probs=43.0
Q ss_pred HHHHHHhcCChHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHcCChhhHhhchHHhh
Q 027539 134 SSKIALDKGKLEDAVNYGTKALARMIAVCGPYHRTTASTYSLLAVVLYHTGDFNQVRQSSVVFQ 197 (222)
Q Consensus 134 ~g~~~l~qG~~e~A~~L~~eAL~i~eqV~G~~HpevA~~y~~LA~vy~~~Gd~~eAi~~~~~~~ 197 (222)
.++.++.+|+++.|...+.+.+.. .|.||+ .+..++.+|..+||+++|+...+...
T Consensus 159 ~a~l~l~~g~~~~Al~~l~~~~~~-----~P~~~~---al~ll~~~~~~~gdw~~a~~~l~~l~ 214 (398)
T PRK10747 159 RVRIQLARNENHAARHGVDKLLEV-----APRHPE---VLRLAEQAYIRTGAWSSLLDILPSMA 214 (398)
T ss_pred HHHHHHHCCCHHHHHHHHHHHHhc-----CCCCHH---HHHHHHHHHHHHHhHHHHHHHHHHHH
Confidence 478888888888888877776543 366664 46778999999999999996666665
No 122
>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B.
Probab=88.39 E-value=1.2 Score=30.03 Aligned_cols=33 Identities=18% Similarity=0.337 Sum_probs=25.9
Q ss_pred cCchhHHHHHHHHHHHHhcCChHHHHHHHHHHHHH
Q 027539 123 CTSADGRTLLESSKIALDKGKLEDAVNYGTKALAR 157 (222)
Q Consensus 123 p~s~~a~~lle~g~~~l~qG~~e~A~~L~~eAL~i 157 (222)
|..+++ .+..|.++..+|++++|.++|.+++.+
T Consensus 28 P~~~~a--~~~lg~~~~~~g~~~~A~~~~~~a~~~ 60 (65)
T PF13432_consen 28 PDNPEA--WYLLGRILYQQGRYDEALAYYERALEL 60 (65)
T ss_dssp TTHHHH--HHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred CCCHHH--HHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 554444 555699999999999999999999865
No 123
>PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi. They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other [].
Probab=88.35 E-value=0.66 Score=43.96 Aligned_cols=69 Identities=16% Similarity=0.145 Sum_probs=54.3
Q ss_pred HHHHHHhcCChHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHcCChhhHh-----------------hchHHh
Q 027539 134 SSKIALDKGKLEDAVNYGTKALARMIAVCGPYHRTTASTYSLLAVVLYHTGDFNQVR-----------------QSSVVF 196 (222)
Q Consensus 134 ~g~~~l~qG~~e~A~~L~~eAL~i~eqV~G~~HpevA~~y~~LA~vy~~~Gd~~eAi-----------------~~~~~~ 196 (222)
.+++++..++-.+|+.++++++ ..+|.-+.-+...|..+...|+++.|+ ......
T Consensus 206 LA~v~l~~~~E~~AI~ll~~aL--------~~~p~d~~LL~~Qa~fLl~k~~~~lAL~iAk~av~lsP~~f~~W~~La~~ 277 (395)
T PF09295_consen 206 LARVYLLMNEEVEAIRLLNEAL--------KENPQDSELLNLQAEFLLSKKKYELALEIAKKAVELSPSEFETWYQLAEC 277 (395)
T ss_pred HHHHHHhcCcHHHHHHHHHHHH--------HhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCchhHHHHHHHHHH
Confidence 3788888888888888888888 335556888899999999999999998 334456
Q ss_pred hhhhCCCCceEEEe
Q 027539 197 QCQLGDSKSSIIIT 210 (222)
Q Consensus 197 ~~~~~~~~~a~~i~ 210 (222)
|.++||+++|+..-
T Consensus 278 Yi~~~d~e~ALlaL 291 (395)
T PF09295_consen 278 YIQLGDFENALLAL 291 (395)
T ss_pred HHhcCCHHHHHHHH
Confidence 77888888887543
No 124
>KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=88.25 E-value=0.46 Score=45.50 Aligned_cols=59 Identities=20% Similarity=0.169 Sum_probs=53.2
Q ss_pred CchhHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHcCChhhHh
Q 027539 124 TSADGRTLLESSKIALDKGKLEDAVNYGTKALARMIAVCGPYHRTTASTYSLLAVVLYHTGDFNQVR 190 (222)
Q Consensus 124 ~s~~a~~lle~g~~~l~qG~~e~A~~L~~eAL~i~eqV~G~~HpevA~~y~~LA~vy~~~Gd~~eAi 190 (222)
.+.+|.++.+.|..+..+..|.+|+..|+.|+.. -|+-|..|.+=|.+|...|+|++|.
T Consensus 45 ~~~~Ae~~k~~gn~~yk~k~Y~nal~~yt~Ai~~--------~pd~a~yy~nRAa~~m~~~~~~~a~ 103 (486)
T KOG0550|consen 45 AAQQAEEAKEEGNAFYKQKTYGNALKNYTFAIDM--------CPDNASYYSNRAATLMMLGRFEEAL 103 (486)
T ss_pred HHHHHHHHHhhcchHHHHhhHHHHHHHHHHHHHh--------CccchhhhchhHHHHHHHHhHhhcc
Confidence 4578999999999999999999999999999964 5677999999999999999999988
No 125
>KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones]
Probab=87.99 E-value=1 Score=44.18 Aligned_cols=63 Identities=22% Similarity=0.264 Sum_probs=53.2
Q ss_pred HHHHHHHHHHHHhcCChHHHHHHHHHHHHHH--------------------HHH------hCCCChHHHHHHHHHHHHHH
Q 027539 128 GRTLLESSKIALDKGKLEDAVNYGTKALARM--------------------IAV------CGPYHRTTASTYSLLAVVLY 181 (222)
Q Consensus 128 a~~lle~g~~~l~qG~~e~A~~L~~eAL~i~--------------------eqV------~G~~HpevA~~y~~LA~vy~ 181 (222)
+.++-+.|...++.|++++|+.+|.+|+.+- +.. +-.+.|+-+..|+.++..+.
T Consensus 2 a~e~k~kgnaa~s~~d~~~ai~~~t~ai~l~p~nhvlySnrsaa~a~~~~~~~al~da~k~~~l~p~w~kgy~r~Gaa~~ 81 (539)
T KOG0548|consen 2 AVELKEKGNAAFSSGDFETAIRLFTEAIMLSPTNHVLYSNRSAAYASLGSYEKALKDATKTRRLNPDWAKGYSRKGAALF 81 (539)
T ss_pred hhHHHHHHHhhcccccHHHHHHHHHHHHccCCCccchhcchHHHHHHHhhHHHHHHHHHHHHhcCCchhhHHHHhHHHHH
Confidence 5677889999999999999999999998741 111 23678999999999999999
Q ss_pred HcCChhhHh
Q 027539 182 HTGDFNQVR 190 (222)
Q Consensus 182 ~~Gd~~eAi 190 (222)
-+|+|++|+
T Consensus 82 ~lg~~~eA~ 90 (539)
T KOG0548|consen 82 GLGDYEEAI 90 (539)
T ss_pred hcccHHHHH
Confidence 999999998
No 126
>PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production. It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A.
Probab=87.95 E-value=0.35 Score=37.98 Aligned_cols=90 Identities=17% Similarity=0.148 Sum_probs=59.1
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHhC--------------CCChHHHHHHHHHHHHHHHcCChhhHhhc--
Q 027539 129 RTLLESSKIALDKGKLEDAVNYGTKALARMIAVCG--------------PYHRTTASTYSLLAVVLYHTGDFNQVRQS-- 192 (222)
Q Consensus 129 ~~lle~g~~~l~qG~~e~A~~L~~eAL~i~eqV~G--------------~~HpevA~~y~~LA~vy~~~Gd~~eAi~~-- 192 (222)
+.+...|......|..+.+.+.+.+++.+|.--+- .++.....++..++..+...|++++|+..
T Consensus 7 ~~~~~~a~~~~~~~~~~~~~~~~~~al~ly~G~~l~~~~~~~W~~~~r~~l~~~~~~~~~~l~~~~~~~~~~~~a~~~~~ 86 (146)
T PF03704_consen 7 EALVREARAAARAGDPEEAIELLEEALALYRGDFLPDLDDEEWVEPERERLRELYLDALERLAEALLEAGDYEEALRLLQ 86 (146)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHTT--SSTTGGGTTSTTHHHHHHHHHHHHHHHHHHHHHHHHHTT-HHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHHhCCCCCCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHH
Confidence 34455677788889999999999999998862221 12344567888899999999999999822
Q ss_pred ---------------hHHhhhhhCCCCceEEEeeeechhcc
Q 027539 193 ---------------SVVFQCQLGDSKSSIIITSFCTEVLI 218 (222)
Q Consensus 193 ---------------~~~~~~~~~~~~~a~~i~e~~~~~~~ 218 (222)
....+.+.|+...|+..++++...|.
T Consensus 87 ~~l~~dP~~E~~~~~lm~~~~~~g~~~~A~~~Y~~~~~~l~ 127 (146)
T PF03704_consen 87 RALALDPYDEEAYRLLMRALAAQGRRAEALRVYERYRRRLR 127 (146)
T ss_dssp HHHHHSTT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHH
T ss_pred HHHhcCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHH
Confidence 22333456777777777776665554
No 127
>KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism]
Probab=87.90 E-value=1.3 Score=46.24 Aligned_cols=84 Identities=19% Similarity=0.223 Sum_probs=50.0
Q ss_pred HHHHHHHHHHHceeeeccccCCCCCCCCCcCCcccccccccccccCchhHHHHHHHHHHHHhcCChHHHHHHHHHHHHHH
Q 027539 79 ISILRGLCHKVGLELVPRDYDMDCPNPFTRDDIVSMVPVCKHVGCTSADGRTLLESSKIALDKGKLEDAVNYGTKALARM 158 (222)
Q Consensus 79 ~~lLR~ic~K~GIQl~~rdY~f~~~~~F~~~DI~ni~PvVK~~~p~s~~a~~lle~g~~~l~qG~~e~A~~L~~eAL~i~ 158 (222)
+..--....+-|+|+..|.|.-+..+| ++-..+ +..+.-+|+++.+..+...|+.--
T Consensus 244 l~~~d~~s~~~~~~ll~~ay~~n~~nP---------------------~~l~~L--An~fyfK~dy~~v~~la~~ai~~t 300 (1018)
T KOG2002|consen 244 LNFNDSDSYKKGVQLLQRAYKENNENP---------------------VALNHL--ANHFYFKKDYERVWHLAEHAIKNT 300 (1018)
T ss_pred HHccchHHHHHHHHHHHHHHhhcCCCc---------------------HHHHHH--HHHHhhcccHHHHHHHHHHHHHhh
Confidence 333344678899999999987666554 121222 455555666666666665555443
Q ss_pred HHHhCCCChHHHHHHHHHHHHHHHcCChhhHh
Q 027539 159 IAVCGPYHRTTASTYSLLAVVLYHTGDFNQVR 190 (222)
Q Consensus 159 eqV~G~~HpevA~~y~~LA~vy~~~Gd~~eAi 190 (222)
..-+..|..|..+|+.|+.+|+|++|-
T Consensus 301 -----~~~~~~aes~Y~~gRs~Ha~Gd~ekA~ 327 (1018)
T KOG2002|consen 301 -----ENKSIKAESFYQLGRSYHAQGDFEKAF 327 (1018)
T ss_pred -----hhhHHHHHHHHHHHHHHHhhccHHHHH
Confidence 233455556666666666666666665
No 128
>PF10516 SHNi-TPR: SHNi-TPR; InterPro: IPR019544 The tetratrico peptide repeat region (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. This entry represents SHNi-TPR (Sim3-Hif1-NASP interrupted TPR), a sequence that is an interrupted form of TPR repeat [].
Probab=87.87 E-value=1.5 Score=28.03 Aligned_cols=33 Identities=24% Similarity=0.215 Sum_probs=29.4
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHHHHHHHHhCC
Q 027539 132 LESSKIALDKGKLEDAVNYGTKALARMIAVCGP 164 (222)
Q Consensus 132 le~g~~~l~qG~~e~A~~L~~eAL~i~eqV~G~ 164 (222)
.-.|-+.+..+++++|.+=|.++|.|.++.+.+
T Consensus 5 ~~Lgeisle~e~f~qA~~D~~~aL~i~~~l~~~ 37 (38)
T PF10516_consen 5 DLLGEISLENENFEQAIEDYEKALEIQEELLPP 37 (38)
T ss_pred HHHHHHHHHhccHHHHHHHHHHHHHHHHHhcCC
Confidence 334999999999999999999999999998765
No 129
>COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion]
Probab=87.76 E-value=1 Score=40.34 Aligned_cols=71 Identities=15% Similarity=0.067 Sum_probs=57.4
Q ss_pred cccccccccCchhHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHcCChhhHhhch
Q 027539 115 VPVCKHVGCTSADGRTLLESSKIALDKGKLEDAVNYGTKALARMIAVCGPYHRTTASTYSLLAVVLYHTGDFNQVRQSS 193 (222)
Q Consensus 115 ~PvVK~~~p~s~~a~~lle~g~~~l~qG~~e~A~~L~~eAL~i~eqV~G~~HpevA~~y~~LA~vy~~~Gd~~eAi~~~ 193 (222)
-++-|-..+..+|++-..-.|-.+.+-|+.++|-.-|.||+.+.-+ - ...++||++.|+-.||++.|..+.
T Consensus 121 ~~~rkA~~l~p~d~~~~~~lgaaldq~Gr~~~Ar~ay~qAl~L~~~-----~---p~~~nNlgms~~L~gd~~~A~~ll 191 (257)
T COG5010 121 SVLRKAARLAPTDWEAWNLLGAALDQLGRFDEARRAYRQALELAPN-----E---PSIANNLGMSLLLRGDLEDAETLL 191 (257)
T ss_pred HHHHHHhccCCCChhhhhHHHHHHHHccChhHHHHHHHHHHHhccC-----C---chhhhhHHHHHHHcCCHHHHHHHH
Confidence 3445566667777777777799999999999999999999988643 3 356789999999999999999443
No 130
>PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A.
Probab=87.74 E-value=0.81 Score=26.40 Aligned_cols=29 Identities=17% Similarity=0.366 Sum_probs=25.1
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHHHH
Q 027539 130 TLLESSKIALDKGKLEDAVNYGTKALARM 158 (222)
Q Consensus 130 ~lle~g~~~l~qG~~e~A~~L~~eAL~i~ 158 (222)
.++..|.++...|+.++|.+.|++.+.-|
T Consensus 2 a~~~~a~~~~~~g~~~~A~~~~~~~~~~~ 30 (33)
T PF13174_consen 2 ALYRLARCYYKLGDYDEAIEYFQRLIKRY 30 (33)
T ss_dssp HHHHHHHHHHHHCHHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHHC
Confidence 46788999999999999999999987643
No 131
>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]
Probab=87.63 E-value=0.59 Score=43.61 Aligned_cols=85 Identities=19% Similarity=0.151 Sum_probs=62.4
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHH--------------HHHHHHH---------------hC--CCChHHHHHHHHHHH
Q 027539 130 TLLESSKIALDKGKLEDAVNYGTKA--------------LARMIAV---------------CG--PYHRTTASTYSLLAV 178 (222)
Q Consensus 130 ~lle~g~~~l~qG~~e~A~~L~~eA--------------L~i~eqV---------------~G--~~HpevA~~y~~LA~ 178 (222)
.+.+.|+-++..|.++.|.++|.+. +.||++. .| ++.-++|.+|.-||.
T Consensus 109 Al~qL~~Dym~aGl~DRAE~~f~~L~de~efa~~AlqqLl~IYQ~treW~KAId~A~~L~k~~~q~~~~eIAqfyCELAq 188 (389)
T COG2956 109 ALQQLGRDYMAAGLLDRAEDIFNQLVDEGEFAEGALQQLLNIYQATREWEKAIDVAERLVKLGGQTYRVEIAQFYCELAQ 188 (389)
T ss_pred HHHHHHHHHHHhhhhhHHHHHHHHHhcchhhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHcCCccchhHHHHHHHHHHH
Confidence 4667788899999999888777643 3355421 22 567899999999999
Q ss_pred HHHHcCChhhHh-----------------hchHHhhhhhCCCCceEEEeeeec
Q 027539 179 VLYHTGDFNQVR-----------------QSSVVFQCQLGDSKSSIIITSFCT 214 (222)
Q Consensus 179 vy~~~Gd~~eAi-----------------~~~~~~~~~~~~~~~a~~i~e~~~ 214 (222)
-+..-.+++.|. +..+....+.|||.+|+...|++.
T Consensus 189 ~~~~~~~~d~A~~~l~kAlqa~~~cvRAsi~lG~v~~~~g~y~~AV~~~e~v~ 241 (389)
T COG2956 189 QALASSDVDRARELLKKALQADKKCVRASIILGRVELAKGDYQKAVEALERVL 241 (389)
T ss_pred HHhhhhhHHHHHHHHHHHHhhCccceehhhhhhHHHHhccchHHHHHHHHHHH
Confidence 999999998877 444555667777777777776653
No 132
>PF09986 DUF2225: Uncharacterized protein conserved in bacteria (DUF2225); InterPro: IPR018708 This conserved bacterial family has no known function.
Probab=87.61 E-value=0.25 Score=42.77 Aligned_cols=48 Identities=21% Similarity=0.105 Sum_probs=40.8
Q ss_pred CChHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHcCChhhHh
Q 027539 142 GKLEDAVNYGTKALARMIAVCGPYHRTTASTYSLLAVVLYHTGDFNQVR 190 (222)
Q Consensus 142 G~~e~A~~L~~eAL~i~eqV~G~~HpevA~~y~~LA~vy~~~Gd~~eAi 190 (222)
-.+++|++-|.=|+-. -++.|.-|...|..+..||.+|..+|+.++..
T Consensus 91 Rt~~~ai~~YkLAll~-~~~~~~~~s~~A~l~LrlAWlyR~~~~~~~E~ 138 (214)
T PF09986_consen 91 RTLEEAIESYKLALLC-AQIKKEKPSKKAGLCLRLAWLYRDLGDEENEK 138 (214)
T ss_pred CCHHHHHHHHHHHHHH-HHHhCCCHHHHHHHHHHHHHHhhccCCHHHHH
Confidence 3688999999777766 56788899999999999999999999966655
No 133
>TIGR00540 hemY_coli hemY protein. This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.
Probab=87.56 E-value=1.6 Score=40.57 Aligned_cols=56 Identities=18% Similarity=0.235 Sum_probs=45.1
Q ss_pred HHHHHHhcCChHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHcCChhhHhhchHHhh
Q 027539 134 SSKIALDKGKLEDAVNYGTKALARMIAVCGPYHRTTASTYSLLAVVLYHTGDFNQVRQSSVVFQ 197 (222)
Q Consensus 134 ~g~~~l~qG~~e~A~~L~~eAL~i~eqV~G~~HpevA~~y~~LA~vy~~~Gd~~eAi~~~~~~~ 197 (222)
.+++++++|+++.|.+.+.+.+.. +|.||+ .+..++.+|..+||+++|+...+.+.
T Consensus 159 ~a~l~l~~~~~~~Al~~l~~l~~~-----~P~~~~---~l~ll~~~~~~~~d~~~a~~~l~~l~ 214 (409)
T TIGR00540 159 RTRILLAQNELHAARHGVDKLLEM-----APRHKE---VLKLAEEAYIRSGAWQALDDIIDNMA 214 (409)
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHh-----CCCCHH---HHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 388888999999888887766654 377775 47789999999999999997666666
No 134
>PRK14574 hmsH outer membrane protein; Provisional
Probab=87.53 E-value=1.3 Score=45.67 Aligned_cols=58 Identities=14% Similarity=0.138 Sum_probs=46.6
Q ss_pred chhHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHcCChhhHh
Q 027539 125 SADGRTLLESSKIALDKGKLEDAVNYGTKALARMIAVCGPYHRTTASTYSLLAVVLYHTGDFNQVR 190 (222)
Q Consensus 125 s~~a~~lle~g~~~l~qG~~e~A~~L~~eAL~i~eqV~G~~HpevA~~y~~LA~vy~~~Gd~~eAi 190 (222)
......+...|+.+.++|++++|+++|++++.. .|+-...+..|+++|..+|+.++|+
T Consensus 99 n~~~~~llalA~ly~~~gdyd~Aiely~kaL~~--------dP~n~~~l~gLa~~y~~~~q~~eAl 156 (822)
T PRK14574 99 NISSRGLASAARAYRNEKRWDQALALWQSSLKK--------DPTNPDLISGMIMTQADAGRGGVVL 156 (822)
T ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh--------CCCCHHHHHHHHHHHhhcCCHHHHH
Confidence 344566666799999999999999999999864 3444555567899999999999999
No 135
>PF00244 14-3-3: 14-3-3 protein; InterPro: IPR023410 The 14-3-3 proteins are a large family of approximately 30kDa acidic proteins which exist primarily as homo- and heterodimeric within all eukaryotic cells [, ]. There is a high degree of sequence identity and conservation between all the 14-3-3 isotypes, particularly in the regions which form the dimer interface or line the central ligand binding channel of the dimeric molecule. Each 14-3-3 protein sequence can be roughly divided into three sections: a divergent amino terminus, the conserved core region and a divergent carboxyl terminus. The conserved middle core region of the 14-3-3s encodes an amphipathic groove that forms the main functional domain, a cradle for interacting with client proteins. The monomer consists of nine helices organised in an antiparallel manner, forming an L-shaped structure. The interior of the L-structure is composed of four helices: H3 and H5, which contain many charged and polar amino acids, and H7 and H9, which contain hydrophobic amino acids. These four helices form the concave amphipathic groove that interacts with target peptides. 14-3-3 proteins mainly bind proteins containing phosphothreonine or phosphoserine motifs however exceptions to this rule do exist. Extensive investigation of the 14-3-3 binding site of the mammalian serine/threonine kinase Raf-1 has produced a consensus sequence for 14-3-3-binding, RSxpSxP (in the single-letter amino-acid code, where x denotes any amino acid and p indicates that the next residue is phosphorylated). 14-3-3 proteins appear to effect intracellular signalling in one of three ways - by direct regulation of the catalytic activity of the bound protein, by regulating interactions between the bound protein and other molecules in the cell by sequestration or modification or by controlling the subcellular localisation of the bound ligand. Proteins appear to initially bind to a single dominant site and then subsequently to many, much weaker secondary interaction sites. The 14-3-3 dimer is capable of changing the conformation of its bound ligand whilst itself undergoing minimal structural alteration. This entry represents the structural domain found in 14-3-3 proteins.; PDB: 2O8P_A 3AXY_D 2C74_A 2C63_A 4DX0_A 1YWT_A 3P1O_A 3P1N_A 4DAU_A 3U9X_A ....
Probab=87.16 E-value=1.5 Score=38.46 Aligned_cols=47 Identities=19% Similarity=0.084 Sum_probs=43.0
Q ss_pred hHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHH-cCChhhHh
Q 027539 144 LEDAVNYGTKALARMIAVCGPYHRTTASTYSLLAVVLYH-TGDFNQVR 190 (222)
Q Consensus 144 ~e~A~~L~~eAL~i~eqV~G~~HpevA~~y~~LA~vy~~-~Gd~~eAi 190 (222)
.+.|.+.|++|+.+-.+-.+|.||---....|.|..||. +|+.++|+
T Consensus 142 ~~~a~~aY~~A~~~a~~~L~~~~p~rLgl~LN~svF~yei~~~~~~A~ 189 (236)
T PF00244_consen 142 AEKALEAYEEALEIAKKELPPTHPLRLGLALNYSVFYYEILNDPEKAI 189 (236)
T ss_dssp HHHHHHHHHHHHHHHHHHSCTTSHHHHHHHHHHHHHHHHTSS-HHHHH
T ss_pred HHHHHHhhhhHHHHHhcccCCCCcHHHHHHHHHHHHHHHHcCChHHHH
Confidence 478999999999999999999999999999999999876 99999999
No 136
>cd02680 MIT_calpain7_2 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in the nuclear thiol protease PalBH. The molecular function of the MIT domain is unclear.
Probab=87.06 E-value=3.8 Score=30.04 Aligned_cols=55 Identities=18% Similarity=0.132 Sum_probs=40.4
Q ss_pred hHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHhCCCChHHH-HHHHHHHHHHH
Q 027539 127 DGRTLLESSKIALDKGKLEDAVNYGTKALARMIAVCGPYHRTTA-STYSLLAVVLY 181 (222)
Q Consensus 127 ~a~~lle~g~~~l~qG~~e~A~~L~~eAL~i~eqV~G~~HpevA-~~y~~LA~vy~ 181 (222)
.|..++..|-..-..|++++|++||.+|+..+....++.=+++. .-+..+|.-|.
T Consensus 5 kai~Lv~~A~~eD~~gny~eA~~lY~~ale~~~~ekn~~~k~~i~~K~~~~a~~yl 60 (75)
T cd02680 5 RAHFLVTQAFDEDEKGNAEEAIELYTEAVELCINTSNETMDQALQTKLKQLARQAL 60 (75)
T ss_pred HHHHHHHHHHHhhHhhhHHHHHHHHHHHHHHHHHhcChhhHHHHHHHHHHHHHHHH
Confidence 46677777777778899999999999999999986555544433 55555665444
No 137
>cd02684 MIT_2 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in proteins with an n-terminal serine/threonine kinase domain. The molecular function of the MIT domain is unclear.
Probab=86.98 E-value=6.2 Score=28.61 Aligned_cols=56 Identities=9% Similarity=0.021 Sum_probs=46.0
Q ss_pred hhHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHh-CCCChHHHHHHHHHHHHHH
Q 027539 126 ADGRTLLESSKIALDKGKLEDAVNYGTKALARMIAVC-GPYHRTTASTYSLLAVVLY 181 (222)
Q Consensus 126 ~~a~~lle~g~~~l~qG~~e~A~~L~~eAL~i~eqV~-G~~HpevA~~y~~LA~vy~ 181 (222)
..|.+++..|--.-..|++++|+.+|.+|+..+..+. +.-.|..-..+..-..=|.
T Consensus 4 ~~Ai~lv~~Av~~D~~g~y~eA~~lY~~ale~~~~~~k~e~~~~~k~~lr~k~~eyl 60 (75)
T cd02684 4 EKAIALVVQAVKKDQRGDAAAALSLYCSALQYFVPALHYETDAQRKEALRQKVLQYV 60 (75)
T ss_pred HHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHH
Confidence 3567788888888889999999999999999999966 7888888777776555554
No 138
>KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning]
Probab=86.88 E-value=0.49 Score=47.21 Aligned_cols=20 Identities=10% Similarity=0.140 Sum_probs=12.3
Q ss_pred HHHHHHHHHHHHcCChhhHh
Q 027539 171 STYSLLAVVLYHTGDFNQVR 190 (222)
Q Consensus 171 ~~y~~LA~vy~~~Gd~~eAi 190 (222)
.++.=|++||.++|+++.|.
T Consensus 490 nAwYGlG~vy~Kqek~e~Ae 509 (638)
T KOG1126|consen 490 NAWYGLGTVYLKQEKLEFAE 509 (638)
T ss_pred HHHHhhhhheeccchhhHHH
Confidence 44445666666666666666
No 139
>COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones]
Probab=86.84 E-value=2.4 Score=38.66 Aligned_cols=66 Identities=18% Similarity=0.185 Sum_probs=52.6
Q ss_pred CchhHHHHHHHHHHHHhcCChHHHHHHHHHHHH------------------------------HHHHHhCCCChHHHHHH
Q 027539 124 TSADGRTLLESSKIALDKGKLEDAVNYGTKALA------------------------------RMIAVCGPYHRTTASTY 173 (222)
Q Consensus 124 ~s~~a~~lle~g~~~l~qG~~e~A~~L~~eAL~------------------------------i~eqV~G~~HpevA~~y 173 (222)
...|++.-+-.|++++.+|+.+.|..=|.+|+. ++.++..-.|-++ ++.
T Consensus 152 nP~d~egW~~Lg~~ym~~~~~~~A~~AY~~A~rL~g~n~~~~~g~aeaL~~~a~~~~ta~a~~ll~~al~~D~~~i-ral 230 (287)
T COG4235 152 NPGDAEGWDLLGRAYMALGRASDALLAYRNALRLAGDNPEILLGLAEALYYQAGQQMTAKARALLRQALALDPANI-RAL 230 (287)
T ss_pred CCCCchhHHHHHHHHHHhcchhHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHhcCCccH-HHH
Confidence 345667777779999999999999988888776 4555665556555 567
Q ss_pred HHHHHHHHHcCChhhHh
Q 027539 174 SLLAVVLYHTGDFNQVR 190 (222)
Q Consensus 174 ~~LA~vy~~~Gd~~eAi 190 (222)
+.||.-++.+|||.+|+
T Consensus 231 ~lLA~~afe~g~~~~A~ 247 (287)
T COG4235 231 SLLAFAAFEQGDYAEAA 247 (287)
T ss_pred HHHHHHHHHcccHHHHH
Confidence 88999999999999999
No 140
>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A ....
Probab=86.79 E-value=0.28 Score=33.40 Aligned_cols=22 Identities=18% Similarity=0.486 Sum_probs=20.7
Q ss_pred HHHHHHHHHHHHHHcCChhhHh
Q 027539 169 TASTYSLLAVVLYHTGDFNQVR 190 (222)
Q Consensus 169 vA~~y~~LA~vy~~~Gd~~eAi 190 (222)
.|..+.++|..++.+|++++|+
T Consensus 2 ~a~~~~~~g~~~~~~~~~~~A~ 23 (69)
T PF13414_consen 2 NAEAWYNLGQIYFQQGDYEEAI 23 (69)
T ss_dssp SHHHHHHHHHHHHHTTHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHH
Confidence 4788999999999999999999
No 141
>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]
Probab=86.74 E-value=2.1 Score=40.05 Aligned_cols=68 Identities=13% Similarity=0.092 Sum_probs=51.6
Q ss_pred ccccCchhHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHcCChhhHhhchHHh
Q 027539 120 HVGCTSADGRTLLESSKIALDKGKLEDAVNYGTKALARMIAVCGPYHRTTASTYSLLAVVLYHTGDFNQVRQSSVVF 196 (222)
Q Consensus 120 ~~~p~s~~a~~lle~g~~~l~qG~~e~A~~L~~eAL~i~eqV~G~~HpevA~~y~~LA~vy~~~Gd~~eAi~~~~~~ 196 (222)
..+|+|.-|.-++ |++.+.+|+++.|+ ..++.|.-..|--+......|...|.++|+.++.+.|...+
T Consensus 208 qa~~~cvRAsi~l--G~v~~~~g~y~~AV-------~~~e~v~eQn~~yl~evl~~L~~~Y~~lg~~~~~~~fL~~~ 275 (389)
T COG2956 208 QADKKCVRASIIL--GRVELAKGDYQKAV-------EALERVLEQNPEYLSEVLEMLYECYAQLGKPAEGLNFLRRA 275 (389)
T ss_pred hhCccceehhhhh--hHHHHhccchHHHH-------HHHHHHHHhChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHH
Confidence 3456666665554 88888888877554 55566666788888899999999999999999999555544
No 142
>PF12862 Apc5: Anaphase-promoting complex subunit 5
Probab=86.46 E-value=4.4 Score=30.03 Aligned_cols=55 Identities=24% Similarity=0.157 Sum_probs=44.8
Q ss_pred CchhHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHH
Q 027539 124 TSADGRTLLESSKIALDKGKLEDAVNYGTKALARMIAVCGPYHRTTASTYSLLAVVL 180 (222)
Q Consensus 124 ~s~~a~~lle~g~~~l~qG~~e~A~~L~~eAL~i~eqV~G~~HpevA~~y~~LA~vy 180 (222)
.......++..|.++...|.+++|+..++||+.+-++. ..+.-++.++..++.+.
T Consensus 37 ~~~~~~all~lA~~~~~~G~~~~A~~~l~eAi~~Are~--~D~~~l~~al~~~~~l~ 91 (94)
T PF12862_consen 37 NSGLAYALLNLAELHRRFGHYEEALQALEEAIRLAREN--GDRRCLAYALSWLANLL 91 (94)
T ss_pred hHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHH--CCHHHHHHHHHHHHHHh
Confidence 34667778999999999999999999999999998885 34566777777776654
No 143
>KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown]
Probab=86.44 E-value=0.43 Score=45.09 Aligned_cols=54 Identities=19% Similarity=0.213 Sum_probs=39.6
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHcCChhhHh
Q 027539 129 RTLLESSKIALDKGKLEDAVNYGTKALARMIAVCGPYHRTTASTYSLLAVVLYHTGDFNQVR 190 (222)
Q Consensus 129 ~~lle~g~~~l~qG~~e~A~~L~~eAL~i~eqV~G~~HpevA~~y~~LA~vy~~~Gd~~eAi 190 (222)
.++-|.|..+..||+|+||++.|+.+++++ |--+..|-|-|+.|.++..|+.|.
T Consensus 98 SEiKE~GN~yFKQgKy~EAIDCYs~~ia~~--------P~NpV~~~NRA~AYlk~K~FA~AE 151 (536)
T KOG4648|consen 98 SEIKERGNTYFKQGKYEEAIDCYSTAIAVY--------PHNPVYHINRALAYLKQKSFAQAE 151 (536)
T ss_pred HHHHHhhhhhhhccchhHHHHHhhhhhccC--------CCCccchhhHHHHHHHHHHHHHHH
Confidence 346688999999999999999999998764 222334556666666666666554
No 144
>KOG0553 consensus TPR repeat-containing protein [General function prediction only]
Probab=86.23 E-value=0.81 Score=41.91 Aligned_cols=60 Identities=12% Similarity=0.045 Sum_probs=54.8
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHcCChhhHh
Q 027539 130 TLLESSKIALDKGKLEDAVNYGTKALARMIAVCGPYHRTTASTYSLLAVVLYHTGDFNQVR 190 (222)
Q Consensus 130 ~lle~g~~~l~qG~~e~A~~L~~eAL~i~eqV~G~~HpevA~~y~~LA~vy~~~Gd~~eAi 190 (222)
+..+.|...-.||........|++|+..|.+.. .+.|.-|..|.+=|.+|.++|.+++|+
T Consensus 76 e~~~~AE~LK~eGN~~m~~~~Y~eAv~kY~~AI-~l~P~nAVyycNRAAAy~~Lg~~~~AV 135 (304)
T KOG0553|consen 76 EDKALAESLKNEGNKLMKNKDYQEAVDKYTEAI-ELDPTNAVYYCNRAAAYSKLGEYEDAV 135 (304)
T ss_pred hHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHH-hcCCCcchHHHHHHHHHHHhcchHHHH
Confidence 667778889999999999999999999999877 577888999999999999999999999
No 145
>KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones]
Probab=86.18 E-value=1.5 Score=42.92 Aligned_cols=57 Identities=25% Similarity=0.300 Sum_probs=51.5
Q ss_pred hHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHcCChhhHhh
Q 027539 127 DGRTLLESSKIALDKGKLEDAVNYGTKALARMIAVCGPYHRTTASTYSLLAVVLYHTGDFNQVRQ 191 (222)
Q Consensus 127 ~a~~lle~g~~~l~qG~~e~A~~L~~eAL~i~eqV~G~~HpevA~~y~~LA~vy~~~Gd~~eAi~ 191 (222)
.|.+.-+.|.-+...|++..|+..|.||+.. .|+-+..|+|.|..|-.+|.+++|+.
T Consensus 357 ~A~e~r~kGne~Fk~gdy~~Av~~YteAIkr--------~P~Da~lYsNRAac~~kL~~~~~aL~ 413 (539)
T KOG0548|consen 357 KAEEEREKGNEAFKKGDYPEAVKHYTEAIKR--------DPEDARLYSNRAACYLKLGEYPEALK 413 (539)
T ss_pred HHHHHHHHHHHHHhccCHHHHHHHHHHHHhc--------CCchhHHHHHHHHHHHHHhhHHHHHH
Confidence 3778888899999999999999999997753 39999999999999999999999993
No 146
>COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only]
Probab=85.41 E-value=1.6 Score=42.35 Aligned_cols=76 Identities=20% Similarity=0.116 Sum_probs=51.2
Q ss_pred HHHHHhcCChHHHHHHHHHHHHHHH--------------------------HHhCCCChHHHHHHHHHHHHHHHcCChhh
Q 027539 135 SKIALDKGKLEDAVNYGTKALARMI--------------------------AVCGPYHRTTASTYSLLAVVLYHTGDFNQ 188 (222)
Q Consensus 135 g~~~l~qG~~e~A~~L~~eAL~i~e--------------------------qV~G~~HpevA~~y~~LA~vy~~~Gd~~e 188 (222)
|.+++..|+.++|.+.+.+|+...- +=+-...|+-+..|..||+.|..+|+..+
T Consensus 347 ~~i~~~~nk~~~A~e~~~kal~l~P~~~~l~~~~a~all~~g~~~eai~~L~~~~~~~p~dp~~w~~LAqay~~~g~~~~ 426 (484)
T COG4783 347 GDILLEANKAKEAIERLKKALALDPNSPLLQLNLAQALLKGGKPQEAIRILNRYLFNDPEDPNGWDLLAQAYAELGNRAE 426 (484)
T ss_pred HHHHHHcCChHHHHHHHHHHHhcCCCccHHHHHHHHHHHhcCChHHHHHHHHHHhhcCCCCchHHHHHHHHHHHhCchHH
Confidence 6667777777777777766665211 11224567778889999999999999888
Q ss_pred HhhchHHhhhhhCCCCceEEEe
Q 027539 189 VRQSSVVFQCQLGDSKSSIIIT 210 (222)
Q Consensus 189 Ai~~~~~~~~~~~~~~~a~~i~ 210 (222)
|..---|.+--.|+++.|++-.
T Consensus 427 a~~A~AE~~~~~G~~~~A~~~l 448 (484)
T COG4783 427 ALLARAEGYALAGRLEQAIIFL 448 (484)
T ss_pred HHHHHHHHHHhCCCHHHHHHHH
Confidence 8755455554567777776543
No 147
>cd02656 MIT MIT: domain contained within Microtubule Interacting and Trafficking molecules. The MIT domain is found in sorting nexins, the nuclear thiol protease PalBH, the AAA protein spastin and archaebacterial proteins with similar domain architecture, vacuolar sorting proteins and others. The molecular function of the MIT domain is unclear.
Probab=85.17 E-value=9.7 Score=26.98 Aligned_cols=55 Identities=11% Similarity=0.121 Sum_probs=42.2
Q ss_pred hHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHh-CCCChHHHHHHHHHHHHHH
Q 027539 127 DGRTLLESSKIALDKGKLEDAVNYGTKALARMIAVC-GPYHRTTASTYSLLAVVLY 181 (222)
Q Consensus 127 ~a~~lle~g~~~l~qG~~e~A~~L~~eAL~i~eqV~-G~~HpevA~~y~~LA~vy~ 181 (222)
.|.++...|...-..|++++|+++|.+|+..+.++. ..-.|..-..+..-..-|.
T Consensus 5 ~a~~l~~~Av~~D~~g~~~~Al~~Y~~a~e~l~~~~~~~~~~~~k~~l~~k~~~yl 60 (75)
T cd02656 5 QAKELIKQAVKEDEDGNYEEALELYKEALDYLLQALKAEKEPKLRKLLRKKVKEYL 60 (75)
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHH
Confidence 466677778778888999999999999999999977 3445666666665555554
No 148
>PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A.
Probab=85.06 E-value=3 Score=37.58 Aligned_cols=52 Identities=25% Similarity=0.221 Sum_probs=39.8
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHcCChhhHh
Q 027539 131 LLESSKIALDKGKLEDAVNYGTKALARMIAVCGPYHRTTASTYSLLAVVLYHTGDFNQVR 190 (222)
Q Consensus 131 lle~g~~~l~qG~~e~A~~L~~eAL~i~eqV~G~~HpevA~~y~~LA~vy~~~Gd~~eAi 190 (222)
+.-.|..++++|++++|.+++.+|+. -.|.+|+ ++.|++.+..++|+..++.
T Consensus 204 lng~A~~~l~~~~~~eAe~~L~~al~-----~~~~~~d---~LaNliv~~~~~gk~~~~~ 255 (290)
T PF04733_consen 204 LNGLAVCHLQLGHYEEAEELLEEALE-----KDPNDPD---TLANLIVCSLHLGKPTEAA 255 (290)
T ss_dssp HHHHHHHHHHCT-HHHHHHHHHHHCC-----C-CCHHH---HHHHHHHHHHHTT-TCHHH
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHH-----hccCCHH---HHHHHHHHHHHhCCChhHH
Confidence 44568899999999999999999875 2355655 6789999999999995554
No 149
>cd02682 MIT_AAA_Arch MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in mostly archaebacterial AAA-ATPases. The molecular function of the MIT domain is unclear.
Probab=85.00 E-value=2.8 Score=30.76 Aligned_cols=37 Identities=22% Similarity=0.203 Sum_probs=32.5
Q ss_pred hHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHhC
Q 027539 127 DGRTLLESSKIALDKGKLEDAVNYGTKALARMIAVCG 163 (222)
Q Consensus 127 ~a~~lle~g~~~l~qG~~e~A~~L~~eAL~i~eqV~G 163 (222)
+|..+...|--+-++|++++|+.+|++|+..+.++.-
T Consensus 5 ~A~~~a~~AVe~D~~gr~~eAi~~Y~~aIe~L~q~~~ 41 (75)
T cd02682 5 MARKYAINAVKAEKEGNAEDAITNYKKAIEVLSQIVK 41 (75)
T ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHH
Confidence 5667777888888999999999999999999998873
No 150
>KOG2003 consensus TPR repeat-containing protein [General function prediction only]
Probab=84.96 E-value=3.1 Score=40.81 Aligned_cols=58 Identities=19% Similarity=0.125 Sum_probs=43.9
Q ss_pred chhHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHcCChhhHh
Q 027539 125 SADGRTLLESSKIALDKGKLEDAVNYGTKALARMIAVCGPYHRTTASTYSLLAVVLYHTGDFNQVR 190 (222)
Q Consensus 125 s~~a~~lle~g~~~l~qG~~e~A~~L~~eAL~i~eqV~G~~HpevA~~y~~LA~vy~~~Gd~~eAi 190 (222)
++-.+.+++-|-++-.+|++++|++.|-+...|+.+ -+..+..+|.+|-.+.+..+|+
T Consensus 521 asc~ealfniglt~e~~~~ldeald~f~klh~il~n--------n~evl~qianiye~led~aqai 578 (840)
T KOG2003|consen 521 ASCTEALFNIGLTAEALGNLDEALDCFLKLHAILLN--------NAEVLVQIANIYELLEDPAQAI 578 (840)
T ss_pred hHHHHHHHHhcccHHHhcCHHHHHHHHHHHHHHHHh--------hHHHHHHHHHHHHHhhCHHHHH
Confidence 344566888888999999999999888877776653 4566777777777777777777
No 151
>COG1729 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=84.84 E-value=2.5 Score=38.03 Aligned_cols=59 Identities=15% Similarity=0.169 Sum_probs=50.8
Q ss_pred chhHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHcCChhhHh
Q 027539 125 SADGRTLLESSKIALDKGKLEDAVNYGTKALARMIAVCGPYHRTTASTYSLLAVVLYHTGDFNQVR 190 (222)
Q Consensus 125 s~~a~~lle~g~~~l~qG~~e~A~~L~~eAL~i~eqV~G~~HpevA~~y~~LA~vy~~~Gd~~eAi 190 (222)
+++|.-- .|+++..+|++++|-..|..+..-| |-||-...++..||++...+|..++|.
T Consensus 177 ~~nA~yW--LGe~~y~qg~y~~Aa~~f~~~~k~~-----P~s~KApdallKlg~~~~~l~~~d~A~ 235 (262)
T COG1729 177 TPNAYYW--LGESLYAQGDYEDAAYIFARVVKDY-----PKSPKAPDALLKLGVSLGRLGNTDEAC 235 (262)
T ss_pred cchhHHH--HHHHHHhcccchHHHHHHHHHHHhC-----CCCCCChHHHHHHHHHHHHhcCHHHHH
Confidence 4555444 4999999999999999888777733 889999999999999999999999999
No 152
>KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=84.64 E-value=0.88 Score=44.55 Aligned_cols=76 Identities=14% Similarity=0.148 Sum_probs=56.4
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHHHH-------HHH-------------------hCCCChHHHHHHHHHHHHHHHcC
Q 027539 131 LLESSKIALDKGKLEDAVNYGTKALARM-------IAV-------------------CGPYHRTTASTYSLLAVVLYHTG 184 (222)
Q Consensus 131 lle~g~~~l~qG~~e~A~~L~~eAL~i~-------eqV-------------------~G~~HpevA~~y~~LA~vy~~~G 184 (222)
....||+.+--+++++|..-|.+|+++- .|. .-.--|.-..||+..|.++-.++
T Consensus 397 YyHRgQm~flL~q~e~A~aDF~Kai~L~pe~~~~~iQl~~a~Yr~~k~~~~m~~Fee~kkkFP~~~Evy~~fAeiLtDqq 476 (606)
T KOG0547|consen 397 YYHRGQMRFLLQQYEEAIADFQKAISLDPENAYAYIQLCCALYRQHKIAESMKTFEEAKKKFPNCPEVYNLFAEILTDQQ 476 (606)
T ss_pred hHhHHHHHHHHHHHHHHHHHHHHHhhcChhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCchHHHHHHHHHhhHH
Confidence 4567888777777888877777776521 111 01234777889999999999999
Q ss_pred ChhhHhhchHHhhhhhCCCCceEEEeeeechh
Q 027539 185 DFNQVRQSSVVFQCQLGDSKSSIIITSFCTEV 216 (222)
Q Consensus 185 d~~eAi~~~~~~~~~~~~~~~a~~i~e~~~~~ 216 (222)
+|++|+ ..| ++|+.+..+..++
T Consensus 477 qFd~A~----k~Y------D~ai~LE~~~~~~ 498 (606)
T KOG0547|consen 477 QFDKAV----KQY------DKAIELEPREHLI 498 (606)
T ss_pred hHHHHH----HHH------HHHHhhccccccc
Confidence 999999 888 8999998885554
No 153
>KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=84.64 E-value=5.3 Score=39.90 Aligned_cols=82 Identities=18% Similarity=0.162 Sum_probs=62.7
Q ss_pred CCCcCCcccccccccccccCchhHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHh--C-----CCChHHHHHHHHHH
Q 027539 105 PFTRDDIVSMVPVCKHVGCTSADGRTLLESSKIALDKGKLEDAVNYGTKALARMIAVC--G-----PYHRTTASTYSLLA 177 (222)
Q Consensus 105 ~F~~~DI~ni~PvVK~~~p~s~~a~~lle~g~~~l~qG~~e~A~~L~~eAL~i~eqV~--G-----~~HpevA~~y~~LA 177 (222)
+-.+.+.++.+|.|= ..+=+.+++.|-.++..|+|.+|++++..|+.+...-. | .+-.|++.+--.||
T Consensus 157 a~l~~~~~q~v~~v~-----e~syel~yN~Ac~~i~~gky~qA~elL~kA~~~~~e~l~~~d~~eEeie~el~~IrvQla 231 (652)
T KOG2376|consen 157 AALQVQLLQSVPEVP-----EDSYELLYNTACILIENGKYNQAIELLEKALRICREKLEDEDTNEEEIEEELNPIRVQLA 231 (652)
T ss_pred HhhhHHHHHhccCCC-----cchHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHhhcccccchhhHHHHHHHHHHHHH
Confidence 333444556666653 22345678999999999999999999999987765443 2 23367899999999
Q ss_pred HHHHHcCChhhHhh
Q 027539 178 VVLYHTGDFNQVRQ 191 (222)
Q Consensus 178 ~vy~~~Gd~~eAi~ 191 (222)
-|+..+|+.+||..
T Consensus 232 yVlQ~~Gqt~ea~~ 245 (652)
T KOG2376|consen 232 YVLQLQGQTAEASS 245 (652)
T ss_pred HHHHHhcchHHHHH
Confidence 99999999999993
No 154
>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A ....
Probab=84.60 E-value=2.1 Score=28.73 Aligned_cols=33 Identities=18% Similarity=0.267 Sum_probs=24.5
Q ss_pred ccCchhHHHHHHHHHHHHhcCChHHHHHHHHHHHH
Q 027539 122 GCTSADGRTLLESSKIALDKGKLEDAVNYGTKALA 156 (222)
Q Consensus 122 ~p~s~~a~~lle~g~~~l~qG~~e~A~~L~~eAL~ 156 (222)
.|...++. +..|++++.+|++++|.+++.+++.
T Consensus 21 ~p~~~~~~--~~la~~~~~~g~~~~A~~~l~~~~~ 53 (68)
T PF14559_consen 21 NPDNPEAR--LLLAQCYLKQGQYDEAEELLERLLK 53 (68)
T ss_dssp TTTSHHHH--HHHHHHHHHTT-HHHHHHHHHCCHG
T ss_pred CCCCHHHH--HHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 45555554 4569999999999999999887764
No 155
>PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans. In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus.
Probab=84.29 E-value=2.2 Score=41.04 Aligned_cols=65 Identities=22% Similarity=0.150 Sum_probs=51.7
Q ss_pred ccCchhHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHcCChhhHhhc
Q 027539 122 GCTSADGRTLLESSKIALDKGKLEDAVNYGTKALARMIAVCGPYHRTTASTYSLLAVVLYHTGDFNQVRQS 192 (222)
Q Consensus 122 ~p~s~~a~~lle~g~~~l~qG~~e~A~~L~~eAL~i~eqV~G~~HpevA~~y~~LA~vy~~~Gd~~eAi~~ 192 (222)
-|.|+.- ++..||.+..+|+.++|++.|++|+.. ++-...+| .-|+.-+|..+..++++++|..+
T Consensus 263 yP~s~lf--l~~~gR~~~~~g~~~~Ai~~~~~a~~~-q~~~~Ql~---~l~~~El~w~~~~~~~w~~A~~~ 327 (468)
T PF10300_consen 263 YPNSALF--LFFEGRLERLKGNLEEAIESFERAIES-QSEWKQLH---HLCYFELAWCHMFQHDWEEAAEY 327 (468)
T ss_pred CCCcHHH--HHHHHHHHHHhcCHHHHHHHHHHhccc-hhhHHhHH---HHHHHHHHHHHHHHchHHHHHHH
Confidence 3555444 788999999999999999999998842 23344444 57899999999999999999933
No 156
>PF13428 TPR_14: Tetratricopeptide repeat
Probab=83.47 E-value=0.92 Score=28.83 Aligned_cols=20 Identities=15% Similarity=0.212 Sum_probs=18.3
Q ss_pred HHHHHHHHHHHHcCChhhHh
Q 027539 171 STYSLLAVVLYHTGDFNQVR 190 (222)
Q Consensus 171 ~~y~~LA~vy~~~Gd~~eAi 190 (222)
..+..||.+|..+|++++|+
T Consensus 2 ~~~~~la~~~~~~G~~~~A~ 21 (44)
T PF13428_consen 2 AAWLALARAYRRLGQPDEAE 21 (44)
T ss_pred HHHHHHHHHHHHcCCHHHHH
Confidence 46788999999999999999
No 157
>KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms]
Probab=83.21 E-value=0.85 Score=44.04 Aligned_cols=56 Identities=18% Similarity=0.128 Sum_probs=46.9
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHcCChhhHh
Q 027539 133 ESSKIALDKGKLEDAVNYGTKALARMIAVCGPYHRTTASTYSLLAVVLYHTGDFNQVR 190 (222)
Q Consensus 133 e~g~~~l~qG~~e~A~~L~~eAL~i~eqV~G~~HpevA~~y~~LA~vy~~~Gd~~eAi 190 (222)
+.|..++-.|+++.|.+.|..++.+-.++ |.---|.-.||+ |+..|+.+.++..||
T Consensus 240 NlgN~hiflg~fe~A~ehYK~tl~LAiel-g~r~vEAQscYS-LgNtytll~e~~kAI 295 (639)
T KOG1130|consen 240 NLGNCHIFLGNFELAIEHYKLTLNLAIEL-GNRTVEAQSCYS-LGNTYTLLKEVQKAI 295 (639)
T ss_pred ccchhhhhhcccHhHHHHHHHHHHHHHHh-cchhHHHHHHHH-hhhHHHHHHHHHHHH
Confidence 34788888999999999999999988774 555556666665 999999999999999
No 158
>PF08969 USP8_dimer: USP8 dimerisation domain; InterPro: IPR015063 This domain is predominantly found in the amino terminal region of Ubiquitin carboxyl-terminal hydrolase 8 (USP8). It has no known function. ; PDB: 2XZE_B 2A9U_A.
Probab=83.14 E-value=1.6 Score=33.83 Aligned_cols=52 Identities=17% Similarity=0.143 Sum_probs=40.0
Q ss_pred ccccccccC--chhHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHhCCCChHH
Q 027539 116 PVCKHVGCT--SADGRTLLESSKIALDKGKLEDAVNYGTKALARMIAVCGPYHRTT 169 (222)
Q Consensus 116 PvVK~~~p~--s~~a~~lle~g~~~l~qG~~e~A~~L~~eAL~i~eqV~G~~Hpev 169 (222)
++-++..+. ...|.+++..|..+..+|+.+.|+-+|.+.+.+++.+ +-|||.
T Consensus 24 ~~~~~~~l~~y~rsa~~l~~~A~~~~~egd~E~AYvl~~R~~~L~~ki--~~Hpdy 77 (115)
T PF08969_consen 24 EFDKNIPLKRYLRSANKLLREAEEYRQEGDEEQAYVLYMRYLTLVEKI--PKHPDY 77 (115)
T ss_dssp GGSTTS-HHHHHHHHHHHHHHHHHHHHCT-HHHHHHHHHHHHHHHCCH--CCSCCC
T ss_pred ccccccCHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHh--hcCccc
Confidence 333444443 3778999999999999999999999999999999444 778863
No 159
>smart00745 MIT Microtubule Interacting and Trafficking molecule domain.
Probab=82.45 E-value=15 Score=26.00 Aligned_cols=56 Identities=14% Similarity=0.150 Sum_probs=41.2
Q ss_pred hhHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHHH
Q 027539 126 ADGRTLLESSKIALDKGKLEDAVNYGTKALARMIAVCG-PYHRTTASTYSLLAVVLY 181 (222)
Q Consensus 126 ~~a~~lle~g~~~l~qG~~e~A~~L~~eAL~i~eqV~G-~~HpevA~~y~~LA~vy~ 181 (222)
..|.+++..|...-..|++++|+++|.+|+..+.+..- .--|..-..+..-+.-|.
T Consensus 6 ~~A~~li~~Av~~d~~g~~~eAl~~Y~~a~e~l~~~~~~~~~~~~~~~~~~k~~eyl 62 (77)
T smart00745 6 SKAKELISKALKADEAGDYEEALELYKKAIEYLLEGIKVESDSKRREAVKAKAAEYL 62 (77)
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHH
Confidence 35677888888888899999999999999999998663 334455555554444443
No 160
>KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics]
Probab=82.34 E-value=8.3 Score=38.92 Aligned_cols=79 Identities=19% Similarity=0.030 Sum_probs=67.5
Q ss_pred CCCCcCCcccccccccccccCchhHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHc
Q 027539 104 NPFTRDDIVSMVPVCKHVGCTSADGRTLLESSKIALDKGKLEDAVNYGTKALARMIAVCGPYHRTTASTYSLLAVVLYHT 183 (222)
Q Consensus 104 ~~F~~~DI~ni~PvVK~~~p~s~~a~~lle~g~~~l~qG~~e~A~~L~~eAL~i~eqV~G~~HpevA~~y~~LA~vy~~~ 183 (222)
.-|+.+|- +...|.++.+-.++..++.+-..|.++.|++++..|+ ..-|.+..-|..=|+++-+.
T Consensus 354 ~~f~~~D~-------~~~E~PttllWt~y~laqh~D~~g~~~~A~~yId~AI--------dHTPTliEly~~KaRI~kH~ 418 (700)
T KOG1156|consen 354 GMFNFLDD-------GKQEPPTTLLWTLYFLAQHYDKLGDYEVALEYIDLAI--------DHTPTLIELYLVKARIFKHA 418 (700)
T ss_pred cCCCcccc-------cccCCchHHHHHHHHHHHHHHHcccHHHHHHHHHHHh--------ccCchHHHHHHHHHHHHHhc
Confidence 45666664 2257889999999999999999999999999999998 45799999999999999999
Q ss_pred CChhhHhhchHHhh
Q 027539 184 GDFNQVRQSSVVFQ 197 (222)
Q Consensus 184 Gd~~eAi~~~~~~~ 197 (222)
|++++|..+.++=+
T Consensus 419 G~l~eAa~~l~ea~ 432 (700)
T KOG1156|consen 419 GLLDEAAAWLDEAQ 432 (700)
T ss_pred CChHHHHHHHHHHH
Confidence 99999997666544
No 161
>KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=82.14 E-value=1.3 Score=43.93 Aligned_cols=59 Identities=19% Similarity=0.132 Sum_probs=47.8
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHcCChhhHh
Q 027539 131 LLESSKIALDKGKLEDAVNYGTKALARMIAVCGPYHRTTASTYSLLAVVLYHTGDFNQVR 190 (222)
Q Consensus 131 lle~g~~~l~qG~~e~A~~L~~eAL~i~eqV~G~~HpevA~~y~~LA~vy~~~Gd~~eAi 190 (222)
+-|.|-+....+.+.+|..+|..++.....+. +--+-..-..+|||-+|.+++++++|+
T Consensus 417 ~~Elgvvay~~~~y~~A~~~f~~~l~~ik~~~-~e~~~w~p~~~NLGH~~Rkl~~~~eAI 475 (611)
T KOG1173|consen 417 LHELGVVAYTYEEYPEALKYFQKALEVIKSVL-NEKIFWEPTLNNLGHAYRKLNKYEEAI 475 (611)
T ss_pred hhhhhheeehHhhhHHHHHHHHHHHHHhhhcc-ccccchhHHHHhHHHHHHHHhhHHHHH
Confidence 44669999999999999999999995544443 333356677899999999999999999
No 162
>smart00028 TPR Tetratricopeptide repeats. Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.
Probab=81.63 E-value=2.4 Score=22.39 Aligned_cols=27 Identities=30% Similarity=0.398 Sum_probs=23.4
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHHH
Q 027539 131 LLESSKIALDKGKLEDAVNYGTKALAR 157 (222)
Q Consensus 131 lle~g~~~l~qG~~e~A~~L~~eAL~i 157 (222)
.+..|..+...|++++|...+.+++.+
T Consensus 4 ~~~~a~~~~~~~~~~~a~~~~~~~~~~ 30 (34)
T smart00028 4 LYNLGNAYLKLGDYDEALEYYEKALEL 30 (34)
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHcc
Confidence 455699999999999999999999875
No 163
>PF11817 Foie-gras_1: Foie gras liver health family 1; InterPro: IPR021773 Mutating the gene foie gras in zebrafish has been shown to affect development; the mutants develop large, lipid-filled hepatocytes in the liver, resembling those in individuals with fatty liver disease []. Foie-gras protein is long and has several well-defined domains though none of them has a known function. We have annotated this one as the first []. THe C terminus of this region contains TPR repeats.
Probab=81.59 E-value=11 Score=32.90 Aligned_cols=68 Identities=13% Similarity=0.066 Sum_probs=49.2
Q ss_pred hHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHcCChhhHhhchHHh
Q 027539 127 DGRTLLESSKIALDKGKLEDAVNYGTKALARMIAVCGPYHRTTASTYSLLAVVLYHTGDFNQVRQSSVVF 196 (222)
Q Consensus 127 ~a~~lle~g~~~l~qG~~e~A~~L~~eAL~i~eqV~G~~HpevA~~y~~LA~vy~~~Gd~~eAi~~~~~~ 196 (222)
...-.++.|+-++..|++++|..+|..+...|.+ ..-+.=...++..|...++++||.++.+..+-++
T Consensus 177 ~~~l~~~~A~ey~~~g~~~~A~~~l~~~~~~yr~--egW~~l~~~~l~~l~~Ca~~~~~~~~~l~~~leL 244 (247)
T PF11817_consen 177 ASYLSLEMAEEYFRLGDYDKALKLLEPAASSYRR--EGWWSLLTEVLWRLLECAKRLGDVEDYLTTSLEL 244 (247)
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHh--CCcHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHH
Confidence 3344556777788888888888888888666553 3445666778888888888888888888555544
No 164
>PRK11906 transcriptional regulator; Provisional
Probab=81.32 E-value=3.4 Score=39.98 Aligned_cols=62 Identities=23% Similarity=0.191 Sum_probs=55.1
Q ss_pred cccCchhHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHcCChhhHh
Q 027539 121 VGCTSADGRTLLESSKIALDKGKLEDAVNYGTKALARMIAVCGPYHRTTASTYSLLAVVLYHTGDFNQVR 190 (222)
Q Consensus 121 ~~p~s~~a~~lle~g~~~l~qG~~e~A~~L~~eAL~i~eqV~G~~HpevA~~y~~LA~vy~~~Gd~~eAi 190 (222)
+.--..|+..++-.|.+....|+++.|..+|.+|+. +.|..|..+...|.+....|+.++|+
T Consensus 331 veld~~Da~a~~~~g~~~~~~~~~~~a~~~f~rA~~--------L~Pn~A~~~~~~~~~~~~~G~~~~a~ 392 (458)
T PRK11906 331 SDITTVDGKILAIMGLITGLSGQAKVSHILFEQAKI--------HSTDIASLYYYRALVHFHNEKIEEAR 392 (458)
T ss_pred HhcCCCCHHHHHHHHHHHHhhcchhhHHHHHHHHhh--------cCCccHHHHHHHHHHHHHcCCHHHHH
Confidence 344567788888899998889999999999999995 57999999999999999999999999
No 165
>PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A.
Probab=80.55 E-value=2.4 Score=24.33 Aligned_cols=19 Identities=26% Similarity=0.457 Sum_probs=17.8
Q ss_pred HHHHHHHHHHHcCChhhHh
Q 027539 172 TYSLLAVVLYHTGDFNQVR 190 (222)
Q Consensus 172 ~y~~LA~vy~~~Gd~~eAi 190 (222)
++..+|.+|+.+|++++|+
T Consensus 2 a~~~~a~~~~~~g~~~~A~ 20 (33)
T PF13174_consen 2 ALYRLARCYYKLGDYDEAI 20 (33)
T ss_dssp HHHHHHHHHHHHCHHHHHH
T ss_pred HHHHHHHHHHHccCHHHHH
Confidence 6788999999999999999
No 166
>KOG4555 consensus TPR repeat-containing protein [Function unknown]
Probab=80.52 E-value=8.2 Score=32.11 Aligned_cols=56 Identities=20% Similarity=0.205 Sum_probs=50.3
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHcCChhhHh
Q 027539 131 LLESSKIALDKGKLEDAVNYGTKALARMIAVCGPYHRTTASTYSLLAVVLYHTGDFNQVR 190 (222)
Q Consensus 131 lle~g~~~l~qG~~e~A~~L~~eAL~i~eqV~G~~HpevA~~y~~LA~vy~~~Gd~~eAi 190 (222)
..+.+|++--||+-++|++-+++|+.+ -|+-....+.+|-.-+.+|..+|+-+.|.
T Consensus 80 yNNRAQa~RLq~~~e~ALdDLn~AleL----ag~~trtacqa~vQRg~lyRl~g~dd~AR 135 (175)
T KOG4555|consen 80 YNNRAQALRLQGDDEEALDDLNKALEL----AGDQTRTACQAFVQRGLLYRLLGNDDAAR 135 (175)
T ss_pred hccHHHHHHHcCChHHHHHHHHHHHHh----cCccchHHHHHHHHHHHHHHHhCchHHHH
Confidence 344699999999999999999999875 68888999999999999999999999887
No 167
>KOG4340 consensus Uncharacterized conserved protein [Function unknown]
Probab=80.47 E-value=2 Score=40.08 Aligned_cols=96 Identities=14% Similarity=0.183 Sum_probs=74.0
Q ss_pred HHHHHHHHHHceeeeccccCCCCCCCCCcCCcccccccccccccCchhHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHH
Q 027539 80 SILRGLCHKVGLELVPRDYDMDCPNPFTRDDIVSMVPVCKHVGCTSADGRTLLESSKIALDKGKLEDAVNYGTKALARMI 159 (222)
Q Consensus 80 ~lLR~ic~K~GIQl~~rdY~f~~~~~F~~~DI~ni~PvVK~~~p~s~~a~~lle~g~~~l~qG~~e~A~~L~~eAL~i~e 159 (222)
.-||+=|.|..--+ -++.+|+.|-..+|-.. |.-.+|....+.|-...+.|++|+|+.-|++|+.+
T Consensus 108 ~~L~~~~lqLqaAI-----------kYse~Dl~g~rsLveQl-p~en~Ad~~in~gCllykegqyEaAvqkFqaAlqv-- 173 (459)
T KOG4340|consen 108 PALHSRVLQLQAAI-----------KYSEGDLPGSRSLVEQL-PSENEADGQINLGCLLYKEGQYEAAVQKFQAALQV-- 173 (459)
T ss_pred HHHHHHHHHHHHHH-----------hcccccCcchHHHHHhc-cCCCccchhccchheeeccccHHHHHHHHHHHHhh--
Confidence 45677776654333 36788888877776543 45578888899999999999999999999999863
Q ss_pred HHhCCCChHHHHHHHHHHHHHHHcCChhhHhhchHH
Q 027539 160 AVCGPYHRTTASTYSLLAVVLYHTGDFNQVRQSSVV 195 (222)
Q Consensus 160 qV~G~~HpevA~~y~~LA~vy~~~Gd~~eAi~~~~~ 195 (222)
|-..|-+|- ++|..+|..|+++.|+.+-.+
T Consensus 174 ---sGyqpllAY---niALaHy~~~qyasALk~iSE 203 (459)
T KOG4340|consen 174 ---SGYQPLLAY---NLALAHYSSRQYASALKHISE 203 (459)
T ss_pred ---cCCCchhHH---HHHHHHHhhhhHHHHHHHHHH
Confidence 567787773 699999999999999954433
No 168
>KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=80.35 E-value=1.3 Score=43.02 Aligned_cols=68 Identities=19% Similarity=0.199 Sum_probs=55.3
Q ss_pred ccccccCchhHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHcCChhhHhhchHHhh
Q 027539 118 CKHVGCTSADGRTLLESSKIALDKGKLEDAVNYGTKALARMIAVCGPYHRTTASTYSLLAVVLYHTGDFNQVRQSSVVFQ 197 (222)
Q Consensus 118 VK~~~p~s~~a~~lle~g~~~l~qG~~e~A~~L~~eAL~i~eqV~G~~HpevA~~y~~LA~vy~~~Gd~~eAi~~~~~~~ 197 (222)
=|-...++-|.+-....|+.+..-++.++|...|..|+.. |.. -...|..||.+|-+++|..+|. .|+
T Consensus 422 qkA~~~kPnDsRlw~aLG~CY~kl~~~~eAiKCykrai~~-----~dt---e~~~l~~LakLye~l~d~~eAa----~~y 489 (559)
T KOG1155|consen 422 QKALELKPNDSRLWVALGECYEKLNRLEEAIKCYKRAILL-----GDT---EGSALVRLAKLYEELKDLNEAA----QYY 489 (559)
T ss_pred HHHHhcCCCchHHHHHHHHHHHHhccHHHHHHHHHHHHhc-----ccc---chHHHHHHHHHHHHHHhHHHHH----HHH
Confidence 3555566667777778899999999999999999999864 332 3468999999999999999999 666
No 169
>PF11207 DUF2989: Protein of unknown function (DUF2989); InterPro: IPR021372 Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed.
Probab=79.66 E-value=6.7 Score=34.07 Aligned_cols=50 Identities=14% Similarity=0.119 Sum_probs=39.5
Q ss_pred HHHhcCChHHHHHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHHHHcCChhhHhh
Q 027539 137 IALDKGKLEDAVNYGTKALARMIAVCG-PYHRTTASTYSLLAVVLYHTGDFNQVRQ 191 (222)
Q Consensus 137 ~~l~qG~~e~A~~L~~eAL~i~eqV~G-~~HpevA~~y~~LA~vy~~~Gd~~eAi~ 191 (222)
++..+-+.+.+..++.++|+++.. | .++||+ +..||.+|+++|++++|=.
T Consensus 149 tyY~krD~~Kt~~ll~~~L~l~~~--~~~~n~ei---l~sLas~~~~~~~~e~AYi 199 (203)
T PF11207_consen 149 TYYTKRDPEKTIQLLLRALELSNP--DDNFNPEI---LKSLASIYQKLKNYEQAYI 199 (203)
T ss_pred HHHHccCHHHHHHHHHHHHHhcCC--CCCCCHHH---HHHHHHHHHHhcchhhhhh
Confidence 344466689999999999998764 3 567765 5579999999999999863
No 170
>PRK14574 hmsH outer membrane protein; Provisional
Probab=78.03 E-value=5.5 Score=41.20 Aligned_cols=78 Identities=10% Similarity=-0.020 Sum_probs=53.0
Q ss_pred HHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHhCCCCh-HHHHHHHHHHHHHHHcCChhhHhhchHH-----------
Q 027539 128 GRTLLESSKIALDKGKLEDAVNYGTKALARMIAVCGPYHR-TTASTYSLLAVVLYHTGDFNQVRQSSVV----------- 195 (222)
Q Consensus 128 a~~lle~g~~~l~qG~~e~A~~L~~eAL~i~eqV~G~~Hp-evA~~y~~LA~vy~~~Gd~~eAi~~~~~----------- 195 (222)
+...++++.....+|+++.|++.|.+++... |.+| .+. .++.++..+|+.++|+.+...
T Consensus 34 ~~~~y~~aii~~r~Gd~~~Al~~L~qaL~~~-----P~~~~av~----dll~l~~~~G~~~~A~~~~eka~~p~n~~~~~ 104 (822)
T PRK14574 34 ADTQYDSLIIRARAGDTAPVLDYLQEESKAG-----PLQSGQVD----DWLQIAGWAGRDQEVIDVYERYQSSMNISSRG 104 (822)
T ss_pred hhHHHHHHHHHHhCCCHHHHHHHHHHHHhhC-----ccchhhHH----HHHHHHHHcCCcHHHHHHHHHhccCCCCCHHH
Confidence 3467889999999999999999999988643 4442 333 677777777888888742111
Q ss_pred ------hhhhhCCCCceEEEeeeec
Q 027539 196 ------FQCQLGDSKSSIIITSFCT 214 (222)
Q Consensus 196 ------~~~~~~~~~~a~~i~e~~~ 214 (222)
.+.+.||+.+|+.+.+++.
T Consensus 105 llalA~ly~~~gdyd~Aiely~kaL 129 (822)
T PRK14574 105 LASAARAYRNEKRWDQALALWQSSL 129 (822)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 3334566666666665553
No 171
>PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional
Probab=77.95 E-value=2.2 Score=44.61 Aligned_cols=59 Identities=10% Similarity=0.095 Sum_probs=44.9
Q ss_pred CchhHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHcCChhhHh
Q 027539 124 TSADGRTLLESSKIALDKGKLEDAVNYGTKALARMIAVCGPYHRTTASTYSLLAVVLYHTGDFNQVR 190 (222)
Q Consensus 124 ~s~~a~~lle~g~~~l~qG~~e~A~~L~~eAL~i~eqV~G~~HpevA~~y~~LA~vy~~~Gd~~eAi 190 (222)
.+.-..........+..+|++++|..++.+++. .||+....|..+|.+|++.|++++|.
T Consensus 27 ~p~n~~a~~~Li~~~~~~~~~deai~i~~~~l~--------~~P~~i~~yy~~G~l~~q~~~~~~~~ 85 (906)
T PRK14720 27 SLSKFKELDDLIDAYKSENLTDEAKDICEEHLK--------EHKKSISALYISGILSLSRRPLNDSN 85 (906)
T ss_pred CcchHHHHHHHHHHHHhcCCHHHHHHHHHHHHH--------hCCcceehHHHHHHHHHhhcchhhhh
Confidence 334444455558888899999999999988775 57888888888888888888776655
No 172
>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A.
Probab=77.43 E-value=9.1 Score=32.15 Aligned_cols=50 Identities=14% Similarity=0.161 Sum_probs=41.8
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHcC
Q 027539 130 TLLESSKIALDKGKLEDAVNYGTKALARMIAVCGPYHRTTASTYSLLAVVLYHTG 184 (222)
Q Consensus 130 ~lle~g~~~l~qG~~e~A~~L~~eAL~i~eqV~G~~HpevA~~y~~LA~vy~~~G 184 (222)
..+..|.++..+|++++|...+.+-+..| |.||.+..++..+|..++.+.
T Consensus 44 A~l~la~a~y~~~~y~~A~~~~~~fi~~y-----P~~~~~~~A~Y~~g~~~~~~~ 93 (203)
T PF13525_consen 44 AQLMLAYAYYKQGDYEEAIAAYERFIKLY-----PNSPKADYALYMLGLSYYKQI 93 (203)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHH------TT-TTHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHC-----CCCcchhhHHHHHHHHHHHhC
Confidence 35778999999999999999998888776 889999999999999998875
No 173
>COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only]
Probab=77.42 E-value=2.8 Score=37.55 Aligned_cols=56 Identities=21% Similarity=0.237 Sum_probs=49.2
Q ss_pred hHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHcCChhhHh
Q 027539 127 DGRTLLESSKIALDKGKLEDAVNYGTKALARMIAVCGPYHRTTASTYSLLAVVLYHTGDFNQVR 190 (222)
Q Consensus 127 ~a~~lle~g~~~l~qG~~e~A~~L~~eAL~i~eqV~G~~HpevA~~y~~LA~vy~~~Gd~~eAi 190 (222)
-|.-++|.|..+-+-|....|.--|.+||+| .|+.+..+|.|+.-+-..|+|+.|.
T Consensus 64 RA~l~fERGvlYDSlGL~~LAR~DftQaLai--------~P~m~~vfNyLG~Yl~~a~~fdaa~ 119 (297)
T COG4785 64 RAQLLFERGVLYDSLGLRALARNDFSQALAI--------RPDMPEVFNYLGIYLTQAGNFDAAY 119 (297)
T ss_pred HHHHHHHhcchhhhhhHHHHHhhhhhhhhhc--------CCCcHHHHHHHHHHHHhcccchHHH
Confidence 4566788888888888888888889999875 6999999999999999999999997
No 174
>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=77.32 E-value=6.3 Score=36.21 Aligned_cols=96 Identities=19% Similarity=0.249 Sum_probs=75.3
Q ss_pred HHHHHHHceeeeccccCCCCCCCCCcCCccccccc------ccccccCchhHHHHHHHHHHHHhcCChHHHHHHHHHHHH
Q 027539 83 RGLCHKVGLELVPRDYDMDCPNPFTRDDIVSMVPV------CKHVGCTSADGRTLLESSKIALDKGKLEDAVNYGTKALA 156 (222)
Q Consensus 83 R~ic~K~GIQl~~rdY~f~~~~~F~~~DI~ni~Pv------VK~~~p~s~~a~~lle~g~~~l~qG~~e~A~~L~~eAL~ 156 (222)
..|+..+|||=.+-=|-|-...|. |...+..|. +.+.-|. ..++.+..|+..+..|++.+|.+++.+++.
T Consensus 87 p~vAaqfgiqsIPtV~af~dGqpV--dgF~G~qPesqlr~~ld~~~~~--~~e~~~~~~~~~~~~e~~~~a~~~~~~al~ 162 (304)
T COG3118 87 PMVAAQFGVQSIPTVYAFKDGQPV--DGFQGAQPESQLRQFLDKVLPA--EEEEALAEAKELIEAEDFGEAAPLLKQALQ 162 (304)
T ss_pred hhHHHHhCcCcCCeEEEeeCCcCc--cccCCCCcHHHHHHHHHHhcCh--HHHHHHHHhhhhhhccchhhHHHHHHHHHH
Confidence 357888999999999999766653 455566665 3333333 667788889999999999999999999997
Q ss_pred HHHHHhCCCChHHHHHHHHHHHHHHHcCChhhHh
Q 027539 157 RMIAVCGPYHRTTASTYSLLAVVLYHTGDFNQVR 190 (222)
Q Consensus 157 i~eqV~G~~HpevA~~y~~LA~vy~~~Gd~~eAi 190 (222)
.-. +-+..--.||..|-.+|+.++|.
T Consensus 163 ~~~--------~~~~~~~~la~~~l~~g~~e~A~ 188 (304)
T COG3118 163 AAP--------ENSEAKLLLAECLLAAGDVEAAQ 188 (304)
T ss_pred hCc--------ccchHHHHHHHHHHHcCChHHHH
Confidence 653 34667778999999999998887
No 175
>PF10516 SHNi-TPR: SHNi-TPR; InterPro: IPR019544 The tetratrico peptide repeat region (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. This entry represents SHNi-TPR (Sim3-Hif1-NASP interrupted TPR), a sequence that is an interrupted form of TPR repeat [].
Probab=76.96 E-value=0.51 Score=30.17 Aligned_cols=34 Identities=24% Similarity=0.311 Sum_probs=27.7
Q ss_pred HHHHHHHHHHHHHcCChhhHhhchHHhhhhhCCCCceEEEeeee
Q 027539 170 ASTYSLLAVVLYHTGDFNQVRQSSVVFQCQLGDSKSSIIITSFC 213 (222)
Q Consensus 170 A~~y~~LA~vy~~~Gd~~eAi~~~~~~~~~~~~~~~a~~i~e~~ 213 (222)
|.||..||-+....++|++|+ . ||++|+.|.++.
T Consensus 1 Adv~~~Lgeisle~e~f~qA~----~------D~~~aL~i~~~l 34 (38)
T PF10516_consen 1 ADVYDLLGEISLENENFEQAI----E------DYEKALEIQEEL 34 (38)
T ss_pred CcHHHHHHHHHHHhccHHHHH----H------HHHHHHHHHHHh
Confidence 568999999999999999999 3 336888877654
No 176
>PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production. It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A.
Probab=76.63 E-value=19 Score=27.99 Aligned_cols=57 Identities=23% Similarity=0.210 Sum_probs=44.0
Q ss_pred hhHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHcCChhhHh
Q 027539 126 ADGRTLLESSKIALDKGKLEDAVNYGTKALARMIAVCGPYHRTTASTYSLLAVVLYHTGDFNQVR 190 (222)
Q Consensus 126 ~~a~~lle~g~~~l~qG~~e~A~~L~~eAL~i~eqV~G~~HpevA~~y~~LA~vy~~~Gd~~eAi 190 (222)
....-+-..+..+...|++++|..++.+++.+ +|.--..|..|-.+|..+|++.+|+
T Consensus 60 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~l~~--------dP~~E~~~~~lm~~~~~~g~~~~A~ 116 (146)
T PF03704_consen 60 LYLDALERLAEALLEAGDYEEALRLLQRALAL--------DPYDEEAYRLLMRALAAQGRRAEAL 116 (146)
T ss_dssp HHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH--------STT-HHHHHHHHHHHHHTT-HHHHH
T ss_pred HHHHHHHHHHHHHHhccCHHHHHHHHHHHHhc--------CCCCHHHHHHHHHHHHHCcCHHHHH
Confidence 33344445567788899999999999999865 6777788899999999999999999
No 177
>cd02677 MIT_SNX15 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This MIT domain sub-family is found in sorting nexin 15 and related proteins. The molecular function of the MIT domain is unclear.
Probab=75.72 E-value=16 Score=26.60 Aligned_cols=51 Identities=10% Similarity=0.104 Sum_probs=39.9
Q ss_pred hHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHh-CCCChHHHHHHHHHH
Q 027539 127 DGRTLLESSKIALDKGKLEDAVNYGTKALARMIAVC-GPYHRTTASTYSLLA 177 (222)
Q Consensus 127 ~a~~lle~g~~~l~qG~~e~A~~L~~eAL~i~eqV~-G~~HpevA~~y~~LA 177 (222)
.|-+++..|.-.-..|++++|+++|.+++..+.... +...|..-..+..=.
T Consensus 5 ~A~~l~~~Ave~d~~~~y~eA~~~Y~~~i~~~~~~~k~e~~~~~k~~ir~K~ 56 (75)
T cd02677 5 QAAELIRLALEKEEEGDYEAAFEFYRAGVDLLLKGVQGDSSPERREAVKRKI 56 (75)
T ss_pred HHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhccCCCHHHHHHHHHHH
Confidence 456677777777888999999999999999999855 777777666555433
No 178
>KOG4234 consensus TPR repeat-containing protein [General function prediction only]
Probab=75.66 E-value=5.2 Score=35.44 Aligned_cols=62 Identities=16% Similarity=0.155 Sum_probs=51.0
Q ss_pred hhHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHcCChhhHh
Q 027539 126 ADGRTLLESSKIALDKGKLEDAVNYGTKALARMIAVCGPYHRTTASTYSLLAVVLYHTGDFNQVR 190 (222)
Q Consensus 126 ~~a~~lle~g~~~l~qG~~e~A~~L~~eAL~i~eqV~G~~HpevA~~y~~LA~vy~~~Gd~~eAi 190 (222)
..+..+=..|.-+...|.+++|..-|.+||.+...... .+-+-+|+|-|...-+++..+.|+
T Consensus 93 ~kad~lK~EGN~~F~ngdyeeA~skY~~Ale~cp~~~~---e~rsIly~Nraaa~iKl~k~e~aI 154 (271)
T KOG4234|consen 93 EKADSLKKEGNELFKNGDYEEANSKYQEALESCPSTST---EERSILYSNRAAALIKLRKWESAI 154 (271)
T ss_pred HHHHHHHHHHHHhhhcccHHHHHHHHHHHHHhCccccH---HHHHHHHhhhHHHHHHhhhHHHHH
Confidence 45667777889999999999999999999987655433 455678999999999999998888
No 179
>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional
Probab=75.37 E-value=1.4 Score=42.61 Aligned_cols=27 Identities=19% Similarity=0.187 Sum_probs=24.7
Q ss_pred CCChHHHHHHHHHHHHHHHcCChhhHh
Q 027539 164 PYHRTTASTYSLLAVVLYHTGDFNQVR 190 (222)
Q Consensus 164 ~~HpevA~~y~~LA~vy~~~Gd~~eAi 190 (222)
+.-|+.+..+++||.+|+.+|+|++|+
T Consensus 69 ~~dP~~a~a~~NLG~AL~~lGryeEAI 95 (453)
T PLN03098 69 EADVKTAEDAVNLGLSLFSKGRVKDAL 95 (453)
T ss_pred cCCCCCHHHHHHHHHHHHHcCCHHHHH
Confidence 457888899999999999999999999
No 180
>KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=75.16 E-value=11 Score=34.33 Aligned_cols=61 Identities=23% Similarity=0.233 Sum_probs=47.3
Q ss_pred HHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHcCChhhHh
Q 027539 128 GRTLLESSKIALDKGKLEDAVNYGTKALARMIAVCGPYHRTTASTYSLLAVVLYHTGDFNQVR 190 (222)
Q Consensus 128 a~~lle~g~~~l~qG~~e~A~~L~~eAL~i~eqV~G~~HpevA~~y~~LA~vy~~~Gd~~eAi 190 (222)
|--.+|.+--.+...+.++|+.+|++++++.++ |.--...-.-|...|++|-...++.||.
T Consensus 110 AAmaleKAak~lenv~Pd~AlqlYqralavve~--~dr~~ma~el~gk~sr~lVrl~kf~Eaa 170 (308)
T KOG1585|consen 110 AAMALEKAAKALENVKPDDALQLYQRALAVVEE--DDRDQMAFELYGKCSRVLVRLEKFTEAA 170 (308)
T ss_pred HHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHhc--cchHHHHHHHHHHhhhHhhhhHHhhHHH
Confidence 445667676677777899999999999999986 3333444567888899999999998887
No 181
>KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning]
Probab=74.61 E-value=4.4 Score=40.63 Aligned_cols=55 Identities=16% Similarity=0.072 Sum_probs=45.7
Q ss_pred HHHHHhcCChHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHcCChhhHh
Q 027539 135 SKIALDKGKLEDAVNYGTKALARMIAVCGPYHRTTASTYSLLAVVLYHTGDFNQVR 190 (222)
Q Consensus 135 g~~~l~qG~~e~A~~L~~eAL~i~eqV~G~~HpevA~~y~~LA~vy~~~Gd~~eAi 190 (222)
+.--+.+|..-....-..+|+..|+. +-..|+.|.-++.++|+.|+.+++|++|.
T Consensus 319 llr~~~~~~~~~s~y~~~~A~~~~~k-lp~h~~nt~wvl~q~GrayFEl~~Y~~a~ 373 (638)
T KOG1126|consen 319 LLRGLGEGYRSLSQYNCREALNLFEK-LPSHHYNTGWVLSQLGRAYFELIEYDQAE 373 (638)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHh-hHHhcCCchHHHHHHHHHHHHHHHHHHHH
Confidence 34444555555556667889999999 88999999999999999999999999999
No 182
>KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms]
Probab=74.45 E-value=7.1 Score=40.02 Aligned_cols=64 Identities=22% Similarity=0.156 Sum_probs=45.3
Q ss_pred HHHHHHHHHHHHhcCChHHHHHHHHHHHHH-------------HHHHhCCCChHH-----------------HHHHHHHH
Q 027539 128 GRTLLESSKIALDKGKLEDAVNYGTKALAR-------------MIAVCGPYHRTT-----------------ASTYSLLA 177 (222)
Q Consensus 128 a~~lle~g~~~l~qG~~e~A~~L~~eAL~i-------------~eqV~G~~Hpev-----------------A~~y~~LA 177 (222)
+.-....|+.+..+|+.+||.+.|..|+.+ .--.-| ||.. ...+..||
T Consensus 684 ~~~~~~~G~~~~~~~~~~EA~~af~~Al~ldP~hv~s~~Ala~~lle~G--~~~la~~~~~L~dalr~dp~n~eaW~~LG 761 (799)
T KOG4162|consen 684 ASVYYLRGLLLEVKGQLEEAKEAFLVALALDPDHVPSMTALAELLLELG--SPRLAEKRSLLSDALRLDPLNHEAWYYLG 761 (799)
T ss_pred HHHHHHhhHHHHHHHhhHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhC--CcchHHHHHHHHHHHhhCCCCHHHHHHHH
Confidence 344566799999999999999999998873 111223 2222 23467788
Q ss_pred HHHHHcCChhhHhhchHHhh
Q 027539 178 VVLYHTGDFNQVRQSSVVFQ 197 (222)
Q Consensus 178 ~vy~~~Gd~~eAi~~~~~~~ 197 (222)
.|.-.+||..+|. +++
T Consensus 762 ~v~k~~Gd~~~Aa----ecf 777 (799)
T KOG4162|consen 762 EVFKKLGDSKQAA----ECF 777 (799)
T ss_pred HHHHHccchHHHH----HHH
Confidence 8888888888888 665
No 183
>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional
Probab=74.27 E-value=2.9 Score=35.36 Aligned_cols=25 Identities=12% Similarity=0.306 Sum_probs=15.9
Q ss_pred ChHHHHHHHHHHHHHHHcCChhhHh
Q 027539 166 HRTTASTYSLLAVVLYHTGDFNQVR 190 (222)
Q Consensus 166 HpevA~~y~~LA~vy~~~Gd~~eAi 190 (222)
+|+-+..+..||.+|..+|++++|+
T Consensus 69 ~P~~~~~w~~Lg~~~~~~g~~~~A~ 93 (198)
T PRK10370 69 NPQNSEQWALLGEYYLWRNDYDNAL 93 (198)
T ss_pred CCCCHHHHHHHHHHHHHCCCHHHHH
Confidence 3444556666666666666666666
No 184
>PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional
Probab=74.01 E-value=4.7 Score=42.17 Aligned_cols=55 Identities=9% Similarity=-0.006 Sum_probs=48.2
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHcCChhhHhhchHHhh
Q 027539 130 TLLESSKIALDKGKLEDAVNYGTKALARMIAVCGPYHRTTASTYSLLAVVLYHTGDFNQVRQSSVVFQ 197 (222)
Q Consensus 130 ~lle~g~~~l~qG~~e~A~~L~~eAL~i~eqV~G~~HpevA~~y~~LA~vy~~~Gd~~eAi~~~~~~~ 197 (222)
.++..|..|-..|+.++|...|.++|.+- |+=+.++|++|-.|... +.++|+ +++
T Consensus 118 Al~~LA~~Ydk~g~~~ka~~~yer~L~~D--------~~n~~aLNn~AY~~ae~-dL~KA~----~m~ 172 (906)
T PRK14720 118 ALRTLAEAYAKLNENKKLKGVWERLVKAD--------RDNPEIVKKLATSYEEE-DKEKAI----TYL 172 (906)
T ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHhcC--------cccHHHHHHHHHHHHHh-hHHHHH----HHH
Confidence 46677888889999999999999988765 78888999999999999 999999 666
No 185
>PF13512 TPR_18: Tetratricopeptide repeat
Probab=73.47 E-value=8.1 Score=31.70 Aligned_cols=50 Identities=16% Similarity=0.275 Sum_probs=45.0
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHcCC
Q 027539 131 LLESSKIALDKGKLEDAVNYGTKALARMIAVCGPYHRTTASTYSLLAVVLYHTGD 185 (222)
Q Consensus 131 lle~g~~~l~qG~~e~A~~L~~eAL~i~eqV~G~~HpevA~~y~~LA~vy~~~Gd 185 (222)
-+..|-++..+|++++|..-+.+=+.++ |.||.+.-+|...|..++.+.+
T Consensus 50 qL~l~yayy~~~~y~~A~a~~~rFirLh-----P~hp~vdYa~Y~~gL~~~~~~~ 99 (142)
T PF13512_consen 50 QLDLAYAYYKQGDYEEAIAAYDRFIRLH-----PTHPNVDYAYYMRGLSYYEQDE 99 (142)
T ss_pred HHHHHHHHHHccCHHHHHHHHHHHHHhC-----CCCCCccHHHHHHHHHHHHHhh
Confidence 4567999999999999999888887776 9999999999999999999876
No 186
>PF12968 DUF3856: Domain of Unknown Function (DUF3856); InterPro: IPR024552 This domain of unknown function is found in a small group of tetratricopeptide-like proteins, which includes the uncharacterised protein Q8KAL8 from SWISSPROT. The structure of Q8KAL8 is known and belongs to the SCOP all alpha class, TPR-like superfamily, CT2138-like family.; PDB: 2HR2_D.
Probab=73.35 E-value=20 Score=29.26 Aligned_cols=65 Identities=20% Similarity=0.144 Sum_probs=49.9
Q ss_pred hhHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHhCCC---C-hHHHHHHHHHHHHHHHcCChhhHh
Q 027539 126 ADGRTLLESSKIALDKGKLEDAVNYGTKALARMIAVCGPY---H-RTTASTYSLLAVVLYHTGDFNQVR 190 (222)
Q Consensus 126 ~~a~~lle~g~~~l~qG~~e~A~~L~~eAL~i~eqV~G~~---H-pevA~~y~~LA~vy~~~Gd~~eAi 190 (222)
..++-.+..|+..+..|.+++|..-+..|..+-..+--.- | ---|-|+--||..+-.+|+|++++
T Consensus 7 a~aY~aLs~ae~ql~~g~~~eAa~s~r~AM~~srtiP~eEaFDh~GFDA~chA~Ls~A~~~Lgry~e~L 75 (144)
T PF12968_consen 7 AMAYMALSDAERQLQDGAYEEAAASCRKAMEVSRTIPAEEAFDHDGFDAFCHAGLSGALAGLGRYDECL 75 (144)
T ss_dssp HHHHHHHHHHHHHHHHT-HHHHHHHHHHHHHHHTTS-TTS---HHHHHHHHHHHHHHHHHHTT-HHHHH
T ss_pred HHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhccCChHhhcccccHHHHHHHHHHHHHHhhccHHHHH
Confidence 4577788899999999999999999999998755432211 1 124789999999999999999987
No 187
>PF13371 TPR_9: Tetratricopeptide repeat
Probab=73.13 E-value=13 Score=25.19 Aligned_cols=31 Identities=23% Similarity=0.320 Sum_probs=25.9
Q ss_pred hHHHHHHHHHHHHhcCChHHHHHHHHHHHHH
Q 027539 127 DGRTLLESSKIALDKGKLEDAVNYGTKALAR 157 (222)
Q Consensus 127 ~a~~lle~g~~~l~qG~~e~A~~L~~eAL~i 157 (222)
+....+..|.++..+|++++|.+.+++++..
T Consensus 28 ~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~~ 58 (73)
T PF13371_consen 28 DPELWLQRARCLFQLGRYEEALEDLERALEL 58 (73)
T ss_pred cchhhHHHHHHHHHhccHHHHHHHHHHHHHH
Confidence 3444666799999999999999999999943
No 188
>KOG3824 consensus Huntingtin interacting protein HYPE [General function prediction only]
Probab=72.53 E-value=16 Score=34.38 Aligned_cols=81 Identities=17% Similarity=0.163 Sum_probs=53.2
Q ss_pred ccccccccccc----cCchhHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHcCChh
Q 027539 112 VSMVPVCKHVG----CTSADGRTLLESSKIALDKGKLEDAVNYGTKALARMIAVCGPYHRTTASTYSLLAVVLYHTGDFN 187 (222)
Q Consensus 112 ~ni~PvVK~~~----p~s~~a~~lle~g~~~l~qG~~e~A~~L~~eAL~i~eqV~G~~HpevA~~y~~LA~vy~~~Gd~~ 187 (222)
...+||--.-. -.-..|.-++.+|.-...+|+.|.|..+|..|+++ .|.||++-.-|... .-.-.+.-
T Consensus 96 ~~~~~v~at~te~~pa~~kEA~~Al~~A~~~~~~Gk~ekA~~lfeHAlal-----aP~~p~~L~e~G~f---~E~~~~iv 167 (472)
T KOG3824|consen 96 QTAVPVMSTQTENDPAKVKEAILALKAAGRSRKDGKLEKAMTLFEHALAL-----APTNPQILIEMGQF---REMHNEIV 167 (472)
T ss_pred ccccccchhhcccCchhhHHHHHHHHHHHHHHhccchHHHHHHHHHHHhc-----CCCCHHHHHHHhHH---HHhhhhhH
Confidence 45556543222 22345666777777788899999999999999985 58888876655443 33335555
Q ss_pred hHhhchHHhhhhhCCCCceEEEe
Q 027539 188 QVRQSSVVFQCQLGDSKSSIIIT 210 (222)
Q Consensus 188 eAi~~~~~~~~~~~~~~~a~~i~ 210 (222)
+|- .+| -+|+.|.
T Consensus 168 ~AD----q~Y------~~ALtis 180 (472)
T KOG3824|consen 168 EAD----QCY------VKALTIS 180 (472)
T ss_pred hhh----hhh------heeeeeC
Confidence 555 555 5566654
No 189
>PF07721 TPR_4: Tetratricopeptide repeat; InterPro: IPR011717 This entry includes tetratricopeptide-like repeats not detected by the IPR001440 from INTERPRO, IPR013105 from INTERPRO and IPR011716 from INTERPRO models. The tetratricopeptide repeat (TPR) motif is a protein-protein interaction module found in multiple copies in a number of functionally different proteins that facilitates specific interactions with a partner protein(s) [].; GO: 0042802 identical protein binding
Probab=72.44 E-value=5.4 Score=22.65 Aligned_cols=23 Identities=17% Similarity=0.231 Sum_probs=19.1
Q ss_pred HHHHHHHHHhcCChHHHHHHHHH
Q 027539 131 LLESSKIALDKGKLEDAVNYGTK 153 (222)
Q Consensus 131 lle~g~~~l~qG~~e~A~~L~~e 153 (222)
.+..|+++..+|+.++|..++.+
T Consensus 4 ~~~la~~~~~~G~~~eA~~~l~~ 26 (26)
T PF07721_consen 4 RLALARALLAQGDPDEAERLLRR 26 (26)
T ss_pred HHHHHHHHHHcCCHHHHHHHHhC
Confidence 45569999999999999988753
No 190
>KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms]
Probab=72.24 E-value=7.6 Score=37.74 Aligned_cols=58 Identities=17% Similarity=0.136 Sum_probs=46.7
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHcCChhhHh
Q 027539 129 RTLLESSKIALDKGKLEDAVNYGTKALARMIAVCGPYHRTTASTYSLLAVVLYHTGDFNQVR 190 (222)
Q Consensus 129 ~~lle~g~~~l~qG~~e~A~~L~~eAL~i~eqV~G~~HpevA~~y~~LA~vy~~~Gd~~eAi 190 (222)
.++--.|.-.+..|+...|+.+|+.|+.+= ...-......|+.|+..|+-++||++|+
T Consensus 18 leLalEGERLck~gdcraGv~ff~aA~qvG----TeDl~tLSAIYsQLGNAyfyL~DY~kAl 75 (639)
T KOG1130|consen 18 LELALEGERLCKMGDCRAGVDFFKAALQVG----TEDLSTLSAIYSQLGNAYFYLKDYEKAL 75 (639)
T ss_pred HHHHHHHHHHHhccchhhhHHHHHHHHHhc----chHHHHHHHHHHHhcchhhhHhhHHHHH
Confidence 455556777888999999999999998642 3344566778999999999999999999
No 191
>PRK10153 DNA-binding transcriptional activator CadC; Provisional
Probab=71.31 E-value=13 Score=36.33 Aligned_cols=71 Identities=20% Similarity=0.162 Sum_probs=50.1
Q ss_pred ccccCchhHHHHHHHHHHHHhcCC---hHHHHHHHHHHHHH--------------HHHH--hCC----------------
Q 027539 120 HVGCTSADGRTLLESSKIALDKGK---LEDAVNYGTKALAR--------------MIAV--CGP---------------- 164 (222)
Q Consensus 120 ~~~p~s~~a~~lle~g~~~l~qG~---~e~A~~L~~eAL~i--------------~eqV--~G~---------------- 164 (222)
...|.+.+|.+++-.|+.++.++. .+.|.+||++|+.+ +... +++
T Consensus 331 ~~~~~~~~Ay~~~lrg~~~~~~~~~~~~~~A~~lle~Ai~ldP~~a~a~A~la~~~~~~~~~~~~~~~~l~~a~~~~~~a 410 (517)
T PRK10153 331 QGLPHQGAALTLFYQAHHYLNSGDAKSLNKASDLLEEILKSEPDFTYAQAEKALADIVRHSQQPLDEKQLAALSTELDNI 410 (517)
T ss_pred ccCCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHh
Confidence 456788899999999999998775 77999999998871 1111 121
Q ss_pred ----CChHHHHHHHHHHHHHHHcCChhhHh
Q 027539 165 ----YHRTTASTYSLLAVVLYHTGDFNQVR 190 (222)
Q Consensus 165 ----~HpevA~~y~~LA~vy~~~Gd~~eAi 190 (222)
..|..+.+|..+|.++...|++++|.
T Consensus 411 ~al~~~~~~~~~~~ala~~~~~~g~~~~A~ 440 (517)
T PRK10153 411 VALPELNVLPRIYEILAVQALVKGKTDEAY 440 (517)
T ss_pred hhcccCcCChHHHHHHHHHHHhcCCHHHHH
Confidence 12222355667777777888888888
No 192
>smart00101 14_3_3 14-3-3 homologues. 14-3-3 homologues mediates signal transduction by binding to phosphoserine-containing proteins. They are involved in growth factor signalling and also interact with MEK kinases.
Probab=71.26 E-value=8.2 Score=34.29 Aligned_cols=48 Identities=15% Similarity=0.076 Sum_probs=43.0
Q ss_pred hHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHc-CChhhHhh
Q 027539 144 LEDAVNYGTKALARMIAVCGPYHRTTASTYSLLAVVLYHT-GDFNQVRQ 191 (222)
Q Consensus 144 ~e~A~~L~~eAL~i~eqV~G~~HpevA~~y~~LA~vy~~~-Gd~~eAi~ 191 (222)
.+.|.+.|++|+.+-.+-..|.||---.-..|.|..||.. ++.++|+.
T Consensus 144 ~~~a~~aY~~A~e~a~~~L~pt~PirLgLaLN~SVF~yEI~~~~~~A~~ 192 (244)
T smart00101 144 AENTLVAYKSAQDIALAELPPTHPIRLGLALNFSVFYYEILNSPDRACN 192 (244)
T ss_pred HHHHHHHHHHHHHHHHccCCCCCHHHHHHHHHHHHHHHHHcCCHHHHHH
Confidence 5689999999999988889999999999999999998875 99999993
No 193
>PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins. Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A.
Probab=70.89 E-value=6 Score=33.93 Aligned_cols=40 Identities=5% Similarity=-0.042 Sum_probs=32.2
Q ss_pred HHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHcCC
Q 027539 145 EDAVNYGTKALARMIAVCGPYHRTTASTYSLLAVVLYHTGD 185 (222)
Q Consensus 145 e~A~~L~~eAL~i~eqV~G~~HpevA~~y~~LA~vy~~~Gd 185 (222)
.++.+|+++|++-+++.. .++|+-..++.+|+.+|..+|.
T Consensus 45 ~es~~miedAisK~eeAL-~I~P~~hdAlw~lGnA~ts~A~ 84 (186)
T PF06552_consen 45 PESKKMIEDAISKFEEAL-KINPNKHDALWCLGNAYTSLAF 84 (186)
T ss_dssp HHHHHHHHHHHHHHHHHH-HH-TT-HHHHHHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHHHH-hcCCchHHHHHHHHHHHHHHHh
Confidence 578889999999999877 4678888889999999988776
No 194
>PF14853 Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repeat; PDB: 1IYG_A 1PC2_A 1NZN_A 3UUX_C 1Y8M_A 2PQR_A 2PQN_A 3O48_A.
Probab=70.19 E-value=5.8 Score=27.00 Aligned_cols=20 Identities=25% Similarity=0.519 Sum_probs=17.9
Q ss_pred HHHHHHHHHHHHcCChhhHh
Q 027539 171 STYSLLAVVLYHTGDFNQVR 190 (222)
Q Consensus 171 ~~y~~LA~vy~~~Gd~~eAi 190 (222)
.|+..||.-+|++|+|++|.
T Consensus 2 d~lY~lAig~ykl~~Y~~A~ 21 (53)
T PF14853_consen 2 DCLYYLAIGHYKLGEYEKAR 21 (53)
T ss_dssp HHHHHHHHHHHHTT-HHHHH
T ss_pred hhHHHHHHHHHHhhhHHHHH
Confidence 58899999999999999999
No 195
>PLN02789 farnesyltranstransferase
Probab=69.48 E-value=18 Score=33.07 Aligned_cols=55 Identities=5% Similarity=0.069 Sum_probs=42.1
Q ss_pred HHHHHHHH-HHhcCChHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHcC-ChhhHhhc
Q 027539 130 TLLESSKI-ALDKGKLEDAVNYGTKALARMIAVCGPYHRTTASTYSLLAVVLYHTG-DFNQVRQS 192 (222)
Q Consensus 130 ~lle~g~~-~l~qG~~e~A~~L~~eAL~i~eqV~G~~HpevA~~y~~LA~vy~~~G-d~~eAi~~ 192 (222)
+.++-=+. ....++.++|+.++.+++.+ +|+-.++++..+.++..+| ++.+|+.+
T Consensus 38 ~a~~~~ra~l~~~e~serAL~lt~~aI~l--------nP~~ytaW~~R~~iL~~L~~~l~eeL~~ 94 (320)
T PLN02789 38 EAMDYFRAVYASDERSPRALDLTADVIRL--------NPGNYTVWHFRRLCLEALDADLEEELDF 94 (320)
T ss_pred HHHHHHHHHHHcCCCCHHHHHHHHHHHHH--------CchhHHHHHHHHHHHHHcchhHHHHHHH
Confidence 34433333 44466889999999999854 8888899999999999999 67899844
No 196
>PF13431 TPR_17: Tetratricopeptide repeat
Probab=68.86 E-value=5.4 Score=24.24 Aligned_cols=25 Identities=24% Similarity=0.442 Sum_probs=20.3
Q ss_pred ccCchhHHHHHHHHHHHHhcCChHHHH
Q 027539 122 GCTSADGRTLLESSKIALDKGKLEDAV 148 (222)
Q Consensus 122 ~p~s~~a~~lle~g~~~l~qG~~e~A~ 148 (222)
+|..+++...+ |.++..+|++++|.
T Consensus 9 ~P~n~~a~~nl--a~~~~~~g~~~~A~ 33 (34)
T PF13431_consen 9 NPNNAEAYNNL--ANLYLNQGDYEEAI 33 (34)
T ss_pred CCCCHHHHHHH--HHHHHHCcCHHhhc
Confidence 56667776665 99999999999986
No 197
>PF04910 Tcf25: Transcriptional repressor TCF25; InterPro: IPR006994 This entry appears to represent a novel family of basic helix-loop-helix (bHLH) proteins that control differentiation and development of a variety of organs [, ]. Human Nulp1 (Q2MK75 from SWISSPROT) is a basic helix-loop-helix protein expressed broadly during early embryonic organogenesis. Over expression of human Nulp1 in COS-7 cells inhibits the transcriptional activity of serum response factor (SRF), suggesting that Nulp1 may act as a novel bHLH transcriptional repressor in the SRF signalling pathway to mediate cellular functions [].
Probab=68.64 E-value=5.5 Score=37.10 Aligned_cols=50 Identities=18% Similarity=0.160 Sum_probs=39.8
Q ss_pred CcccccccccccccCchhHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHh
Q 027539 110 DIVSMVPVCKHVGCTSADGRTLLESSKIALDKGKLEDAVNYGTKALARMIAVC 162 (222)
Q Consensus 110 DI~ni~PvVK~~~p~s~~a~~lle~g~~~l~qG~~e~A~~L~~eAL~i~eqV~ 162 (222)
|..+|+.++ +.+|...++ ++..+.++..+|+.+.|-+++++||-.++++.
T Consensus 25 Dp~~l~~ll-~~~PyHidt--Llqls~v~~~~gd~~~A~~lleRALf~~e~~~ 74 (360)
T PF04910_consen 25 DPNALINLL-QKNPYHIDT--LLQLSEVYRQQGDHAQANDLLERALFAFERAF 74 (360)
T ss_pred CHHHHHHHH-HHCCCcHHH--HHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHH
Confidence 455555556 555665554 88889999999999999999999999999754
No 198
>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional
Probab=68.48 E-value=9.6 Score=37.88 Aligned_cols=57 Identities=9% Similarity=-0.001 Sum_probs=31.5
Q ss_pred chhHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHcCChhhHh
Q 027539 125 SADGRTLLESSKIALDKGKLEDAVNYGTKALARMIAVCGPYHRTTASTYSLLAVVLYHTGDFNQVR 190 (222)
Q Consensus 125 s~~a~~lle~g~~~l~qG~~e~A~~L~~eAL~i~eqV~G~~HpevA~~y~~LA~vy~~~Gd~~eAi 190 (222)
...+.+.+ ...+...|+.++|+++|.+.... .+.|+.. +|+.+-..|.++|++++|.
T Consensus 289 ~~vt~n~l--i~~y~~~g~~~eA~~lf~~M~~~------g~~pd~~-t~~~ll~a~~~~g~~~~a~ 345 (697)
T PLN03081 289 TTVAWNSM--LAGYALHGYSEEALCLYYEMRDS------GVSIDQF-TFSIMIRIFSRLALLEHAK 345 (697)
T ss_pred ChhHHHHH--HHHHHhCCCHHHHHHHHHHHHHc------CCCCCHH-HHHHHHHHHHhccchHHHH
Confidence 33444443 67788888888888888775431 1233322 3444444444455444444
No 199
>KOG1586 consensus Protein required for fusion of vesicles in vesicular transport, alpha-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=68.48 E-value=6.8 Score=35.33 Aligned_cols=20 Identities=35% Similarity=0.233 Sum_probs=9.9
Q ss_pred cCChHHHHHHHHHHHHHHHH
Q 027539 141 KGKLEDAVNYGTKALARMIA 160 (222)
Q Consensus 141 qG~~e~A~~L~~eAL~i~eq 160 (222)
+++.++|.+.+..|+.||..
T Consensus 86 k~~~~eAv~cL~~aieIyt~ 105 (288)
T KOG1586|consen 86 KVDPEEAVNCLEKAIEIYTD 105 (288)
T ss_pred ccChHHHHHHHHHHHHHHHh
Confidence 33455555555555555443
No 200
>KOG0508 consensus Ankyrin repeat protein [General function prediction only]
Probab=68.43 E-value=0.34 Score=47.08 Aligned_cols=42 Identities=19% Similarity=0.256 Sum_probs=38.7
Q ss_pred HHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHcCChhhHh
Q 027539 149 NYGTKALARMIAVCGPYHRTTASTYSLLAVVLYHTGDFNQVR 190 (222)
Q Consensus 149 ~L~~eAL~i~eqV~G~~HpevA~~y~~LA~vy~~~Gd~~eAi 190 (222)
++=-|||-|.|++.||-||||+-..+.-+.+|..+|+++..+
T Consensus 316 ~~RmqaLiirerILgpsh~d~sYyir~rgavyad~g~~~rCi 357 (615)
T KOG0508|consen 316 EMRMQALIIRERILGPSHPDVSYYIRYRGAVYADSGEFERCI 357 (615)
T ss_pred HHHHHHHHHHHHHhCCCCCCceeEEEeeeeeecCCccHHHHH
Confidence 344689999999999999999999999999999999999988
No 201
>KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms]
Probab=66.88 E-value=9.4 Score=39.18 Aligned_cols=84 Identities=21% Similarity=0.288 Sum_probs=68.2
Q ss_pred hhHHHHHHHHHHHceeeeccccCCCCCCCCCcCCcccccccccccccCchhHHHHHHHHHHHHhcCChHHHHHHHHHHHH
Q 027539 77 RKISILRGLCHKVGLELVPRDYDMDCPNPFTRDDIVSMVPVCKHVGCTSADGRTLLESSKIALDKGKLEDAVNYGTKALA 156 (222)
Q Consensus 77 ~k~~lLR~ic~K~GIQl~~rdY~f~~~~~F~~~DI~ni~PvVK~~~p~s~~a~~lle~g~~~l~qG~~e~A~~L~~eAL~ 156 (222)
-+..-+|.-|+|-++|.+.+--.|+..+| | -++..|-.+..+++++.|.+...++|+
T Consensus 450 a~~~seR~~~h~kslqale~av~~d~~dp----~-------------------~if~lalq~A~~R~l~sAl~~~~eaL~ 506 (799)
T KOG4162|consen 450 ANLKSERDALHKKSLQALEEAVQFDPTDP----L-------------------VIFYLALQYAEQRQLTSALDYAREALA 506 (799)
T ss_pred CCChHHHHHHHHHHHHHHHHHHhcCCCCc----h-------------------HHHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence 34445888999999998888666665544 2 256778889999999999999999998
Q ss_pred HHHHHhCCCChHHHHHHHHHHHHHHHcCChhhHh
Q 027539 157 RMIAVCGPYHRTTASTYSLLAVVLYHTGDFNQVR 190 (222)
Q Consensus 157 i~eqV~G~~HpevA~~y~~LA~vy~~~Gd~~eAi 190 (222)
+- ..+.+.+++.||.+..-++++.+|+
T Consensus 507 l~-------~~~~~~~whLLALvlSa~kr~~~Al 533 (799)
T KOG4162|consen 507 LN-------RGDSAKAWHLLALVLSAQKRLKEAL 533 (799)
T ss_pred hc-------CCccHHHHHHHHHHHhhhhhhHHHH
Confidence 52 3467889999999999999999998
No 202
>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=66.77 E-value=25 Score=32.44 Aligned_cols=56 Identities=21% Similarity=0.172 Sum_probs=44.0
Q ss_pred hhHHHHHHHHHHHHhcCChHHHHHHHHHHHHH---------------HHHHhCCCChHHHHHHHHHHHHHH
Q 027539 126 ADGRTLLESSKIALDKGKLEDAVNYGTKALAR---------------MIAVCGPYHRTTASTYSLLAVVLY 181 (222)
Q Consensus 126 ~~a~~lle~g~~~l~qG~~e~A~~L~~eAL~i---------------~eqV~G~~HpevA~~y~~LA~vy~ 181 (222)
.|..-.++.|.++...|+.++|++.+-.-+.. +-...|+.||-|...-++|+.++|
T Consensus 234 dd~~aa~~lA~~~~~~g~~e~Ale~Ll~~l~~d~~~~d~~~Rk~lle~f~~~g~~Dp~~~~~RRkL~slLy 304 (304)
T COG3118 234 DDVEAALALADQLHLVGRNEAALEHLLALLRRDRGFEDGEARKTLLELFEAFGPADPLVLAYRRKLYSLLY 304 (304)
T ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcccccCcHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhhC
Confidence 46677888899999999999999887555442 335679999988888888887764
No 203
>KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=66.70 E-value=12 Score=34.10 Aligned_cols=52 Identities=25% Similarity=0.234 Sum_probs=42.9
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHcCChhhHh
Q 027539 131 LLESSKIALDKGKLEDAVNYGTKALARMIAVCGPYHRTTASTYSLLAVVLYHTGDFNQVR 190 (222)
Q Consensus 131 lle~g~~~l~qG~~e~A~~L~~eAL~i~eqV~G~~HpevA~~y~~LA~vy~~~Gd~~eAi 190 (222)
+.-.+.+++.+|++++|..++.+||.-.-+. ..++.|+-+.-.++|..+++.
T Consensus 210 lnG~Av~~l~~~~~eeAe~lL~eaL~kd~~d--------petL~Nliv~a~~~Gkd~~~~ 261 (299)
T KOG3081|consen 210 LNGQAVCHLQLGRYEEAESLLEEALDKDAKD--------PETLANLIVLALHLGKDAEVT 261 (299)
T ss_pred HccHHHHHHHhcCHHHHHHHHHHHHhccCCC--------HHHHHHHHHHHHHhCCChHHH
Confidence 4445778999999999999999999865443 667888889999999998887
No 204
>PF10373 EST1_DNA_bind: Est1 DNA/RNA binding domain; InterPro: IPR018834 Est1 is a protein which recruits or activates telomerase at the site of polymerisation [, ]. This is the DNA/RNA binding domain of EST1 []. ; PDB: 1YA0_B.
Probab=66.67 E-value=7.2 Score=33.46 Aligned_cols=36 Identities=28% Similarity=0.251 Sum_probs=30.3
Q ss_pred HHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHcCChhhHh
Q 027539 147 AVNYGTKALARMIAVCGPYHRTTASTYSLLAVVLYHTGDFNQVR 190 (222)
Q Consensus 147 A~~L~~eAL~i~eqV~G~~HpevA~~y~~LA~vy~~~Gd~~eAi 190 (222)
|..+|.+|+.+ .|+.+..||.||.++...|+.-+|+
T Consensus 1 A~~~Y~~A~~l--------~P~~G~p~nQLAvl~~~~~~~l~av 36 (278)
T PF10373_consen 1 AERYYRKAIRL--------LPSNGNPYNQLAVLASYQGDDLDAV 36 (278)
T ss_dssp HHHHHHHHHHH---------TTBSHHHHHHHHHHHHTT-HHHHH
T ss_pred CHHHHHHHHHh--------CCCCCCcccchhhhhccccchHHHH
Confidence 56778888765 5999999999999999999999998
No 205
>KOG2003 consensus TPR repeat-containing protein [General function prediction only]
Probab=66.62 E-value=1.8 Score=42.33 Aligned_cols=51 Identities=16% Similarity=0.281 Sum_probs=40.0
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHcCChhhHh
Q 027539 132 LESSKIALDKGKLEDAVNYGTKALARMIAVCGPYHRTTASTYSLLAVVLYHTGDFNQVR 190 (222)
Q Consensus 132 le~g~~~l~qG~~e~A~~L~~eAL~i~eqV~G~~HpevA~~y~~LA~vy~~~Gd~~eAi 190 (222)
.+.|.+....|.++.|.+.|.|||. ....--.++.+++..+-.+|..++|+
T Consensus 494 ~nkgn~~f~ngd~dka~~~ykeal~--------ndasc~ealfniglt~e~~~~ldeal 544 (840)
T KOG2003|consen 494 TNKGNIAFANGDLDKAAEFYKEALN--------NDASCTEALFNIGLTAEALGNLDEAL 544 (840)
T ss_pred hcCCceeeecCcHHHHHHHHHHHHc--------CchHHHHHHHHhcccHHHhcCHHHHH
Confidence 3445555667889999999999985 34555677888999999999999999
No 206
>KOG4340 consensus Uncharacterized conserved protein [Function unknown]
Probab=66.45 E-value=7.6 Score=36.35 Aligned_cols=36 Identities=22% Similarity=0.176 Sum_probs=19.9
Q ss_pred hCCCChHHHHHHHHHHHHHHHcCChhhHhhchHHhhhhhC
Q 027539 162 CGPYHRTTASTYSLLAVVLYHTGDFNQVRQSSVVFQCQLG 201 (222)
Q Consensus 162 ~G~~HpevA~~y~~LA~vy~~~Gd~~eAi~~~~~~~~~~~ 201 (222)
.|.-.|.+-..++.||-.||+..+|.+|. +++.|||
T Consensus 36 ~~Er~p~~rAgLSlLgyCYY~~Q~f~~AA----~CYeQL~ 71 (459)
T KOG4340|consen 36 ELERSPRSRAGLSLLGYCYYRLQEFALAA----ECYEQLG 71 (459)
T ss_pred HHhcCccchHHHHHHHHHHHHHHHHHHHH----HHHHHHH
Confidence 34445555555566666666666665555 5554544
No 207
>PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis []. It is also involved in sporulation [].
Probab=65.95 E-value=4.6 Score=35.80 Aligned_cols=63 Identities=14% Similarity=0.088 Sum_probs=49.5
Q ss_pred HHhcCChHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHcC-ChhhHhhchHHhhhhhCCCCceEEEe
Q 027539 138 ALDKGKLEDAVNYGTKALARMIAVCGPYHRTTASTYSLLAVVLYHTG-DFNQVRQSSVVFQCQLGDSKSSIIIT 210 (222)
Q Consensus 138 ~l~qG~~e~A~~L~~eAL~i~eqV~G~~HpevA~~y~~LA~vy~~~G-d~~eAi~~~~~~~~~~~~~~~a~~i~ 210 (222)
...||+++.|.-++.++-.+....--..--+.|..+.+.|.-.+..+ ++++|+ .+- ++|..|-
T Consensus 3 A~~~~~~~~A~~~~~K~~~~~~~~~~~~~~~La~~~yn~G~~l~~~~~~~~~a~----~wL------~~a~~~l 66 (278)
T PF08631_consen 3 AWKQGDLDLAEHMYSKAKDLLNSLDPDMAEELARVCYNIGKSLLSKKDKYEEAV----KWL------QRAYDIL 66 (278)
T ss_pred chhhCCHHHHHHHHHHhhhHHhcCCcHHHHHHHHHHHHHHHHHHHcCCChHHHH----HHH------HHHHHHH
Confidence 45799999999999999998874444455677888888898889999 999998 555 5565553
No 208
>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional
Probab=65.39 E-value=12 Score=37.23 Aligned_cols=33 Identities=9% Similarity=0.146 Sum_probs=26.3
Q ss_pred CChHHHHHHHHHHHHHHHcCChhhHhhchHHhh
Q 027539 165 YHRTTASTYSLLAVVLYHTGDFNQVRQSSVVFQ 197 (222)
Q Consensus 165 ~HpevA~~y~~LA~vy~~~Gd~~eAi~~~~~~~ 197 (222)
+.|+-...|..|+.+|...|++++|...-....
T Consensus 523 ~~p~~~~~y~~L~~~y~~~G~~~~A~~v~~~m~ 555 (697)
T PLN03081 523 MGPEKLNNYVVLLNLYNSSGRQAEAAKVVETLK 555 (697)
T ss_pred CCCCCCcchHHHHHHHHhCCCHHHHHHHHHHHH
Confidence 456667789999999999999999994444443
No 209
>TIGR03504 FimV_Cterm FimV C-terminal domain. This protein is found at the extreme C-terminus of FimV from Pseudomonas aeruginosa, and of TspA of Neisseria meningitidis. Disruption of the former blocks twitching motility from type IV pili; Semmler, et al. suggest a role in peptidoglycan layer remodelling required by type IV fimbrial systems.
Probab=64.23 E-value=6.1 Score=25.96 Aligned_cols=24 Identities=21% Similarity=0.105 Sum_probs=18.9
Q ss_pred HHHHHHHHHcCChhhHhhchHHhh
Q 027539 174 SLLAVVLYHTGDFNQVRQSSVVFQ 197 (222)
Q Consensus 174 ~~LA~vy~~~Gd~~eAi~~~~~~~ 197 (222)
..||..|..+||++.|.....+..
T Consensus 3 LdLA~ayie~Gd~e~Ar~lL~evl 26 (44)
T TIGR03504 3 LDLARAYIEMGDLEGARELLEEVI 26 (44)
T ss_pred hHHHHHHHHcCChHHHHHHHHHHH
Confidence 469999999999999995444433
No 210
>TIGR03504 FimV_Cterm FimV C-terminal domain. This protein is found at the extreme C-terminus of FimV from Pseudomonas aeruginosa, and of TspA of Neisseria meningitidis. Disruption of the former blocks twitching motility from type IV pili; Semmler, et al. suggest a role in peptidoglycan layer remodelling required by type IV fimbrial systems.
Probab=63.96 E-value=24 Score=23.07 Aligned_cols=25 Identities=20% Similarity=0.337 Sum_probs=22.3
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHHH
Q 027539 132 LESSKIALDKGKLEDAVNYGTKALA 156 (222)
Q Consensus 132 le~g~~~l~qG~~e~A~~L~~eAL~ 156 (222)
++.|++|+..|+.+.|.+++.+.+.
T Consensus 3 LdLA~ayie~Gd~e~Ar~lL~evl~ 27 (44)
T TIGR03504 3 LDLARAYIEMGDLEGARELLEEVIE 27 (44)
T ss_pred hHHHHHHHHcCChHHHHHHHHHHHH
Confidence 5679999999999999999998884
No 211
>cd02679 MIT_spastin MIT: domain contained within Microtubule Interacting and Trafficking molecules. This MIT domain sub-family is found in the AAA protein spastin, a probable ATPase involved in the assembly or function of nuclear protein complexes; spastins might also be involved in microtubule dynamics. The molecular function of the MIT domain is unclear.
Probab=62.94 E-value=18 Score=26.71 Aligned_cols=40 Identities=15% Similarity=-0.027 Sum_probs=34.1
Q ss_pred hHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHhCCCC
Q 027539 127 DGRTLLESSKIALDKGKLEDAVNYGTKALARMIAVCGPYH 166 (222)
Q Consensus 127 ~a~~lle~g~~~l~qG~~e~A~~L~~eAL~i~eqV~G~~H 166 (222)
.|.+..+.|-.+-..|..++|+.+|.+++.++++-...--
T Consensus 7 ~A~~~I~kaL~~dE~g~~e~Al~~Y~~gi~~l~eg~ai~~ 46 (79)
T cd02679 7 QAFEEISKALRADEWGDKEQALAHYRKGLRELEEGIAVPV 46 (79)
T ss_pred HHHHHHHHHhhhhhcCCHHHHHHHHHHHHHHHHHHcCCCC
Confidence 5777888888888889999999999999999998776544
No 212
>smart00770 Zn_dep_PLPC Zinc dependent phospholipase C (alpha toxin). This domain conveys a zinc dependent phospholipase C activity (EC 3.1.4.3). It is found in a monomeric phospholipase C of Bacillus cereus as well as in the alpha toxin of Clostridium perfringens and Clostridium bifermentans, which is involved in haemolysis and cell rupture. It is also found in a lecithinase of Listeria monocytogenes, which is involved in breaking the 2-membrane vacuoles that surround the bacterium. Structure information: PDB 1ca1.
Probab=61.34 E-value=31 Score=30.68 Aligned_cols=76 Identities=18% Similarity=0.241 Sum_probs=59.7
Q ss_pred HceeeeccccC---CCCCCCCCcCCcccccccccccccCc-hhHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHhCC
Q 027539 89 VGLELVPRDYD---MDCPNPFTRDDIVSMVPVCKHVGCTS-ADGRTLLESSKIALDKGKLEDAVNYGTKALARMIAVCGP 164 (222)
Q Consensus 89 ~GIQl~~rdY~---f~~~~~F~~~DI~ni~PvVK~~~p~s-~~a~~lle~g~~~l~qG~~e~A~~L~~eAL~i~eqV~G~ 164 (222)
-|+-+...+.. +...+=+.|++=.+..|- .|.. ..++..++.|.....+|++++|.-++..|+-+++.+.-|
T Consensus 75 ~G~~~aD~~~~~~~~~~~HFydp~~~~~yL~~----~~~A~~~~~ky~~~A~~~~~~g~~~~A~~~LG~a~Hy~~D~~~P 150 (241)
T smart00770 75 LGSTYADYDNKYYDLSQDHFYDPDTGKNYLPG----FSNAKDTGRKYFKLALNEWKKGNYKKAFFYLGRACHYLGDLSTP 150 (241)
T ss_pred cCCcccccCccccccccccccCCCCCCCCCCC----CCcHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCCc
Confidence 68888766544 333467788888786553 1222 455788999999999999999999999999999999999
Q ss_pred CChH
Q 027539 165 YHRT 168 (222)
Q Consensus 165 ~Hpe 168 (222)
+|.-
T Consensus 151 ~Ha~ 154 (241)
T smart00770 151 YHAN 154 (241)
T ss_pred cccc
Confidence 9984
No 213
>PRK05685 fliS flagellar protein FliS; Validated
Probab=60.56 E-value=37 Score=27.05 Aligned_cols=55 Identities=16% Similarity=0.247 Sum_probs=43.7
Q ss_pred HHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHhCCCChHH-HHHHHHHHHHHHH
Q 027539 128 GRTLLESSKIALDKGKLEDAVNYGTKALARMIAVCGPYHRTT-ASTYSLLAVVLYH 182 (222)
Q Consensus 128 a~~lle~g~~~l~qG~~e~A~~L~~eAL~i~eqV~G~~Hpev-A~~y~~LA~vy~~ 182 (222)
+-..++.++..+.+|+++++.+-..+|..|....-+.+.++. ...-.+|..+|.-
T Consensus 35 ai~~l~~A~~ai~~~~~~~~~~~l~ka~~Ii~eL~~sLd~e~ggeiA~~L~~LY~y 90 (132)
T PRK05685 35 ALSFLAQAKLAIEQGDIEAKGEYLSKAINIINGLRNSLDMEKGGEVAKNLSALYDY 90 (132)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHhhcCCccccHHHHHHHHHHHH
Confidence 335666788899999999999999999999999998888765 3555566666653
No 214
>PLN03218 maturation of RBCL 1; Provisional
Probab=60.06 E-value=19 Score=38.44 Aligned_cols=26 Identities=19% Similarity=0.207 Sum_probs=17.1
Q ss_pred CChHHHHHHHHHHHHHHHcCChhhHhh
Q 027539 165 YHRTTASTYSLLAVVLYHTGDFNQVRQ 191 (222)
Q Consensus 165 ~HpevA~~y~~LA~vy~~~Gd~~eAi~ 191 (222)
..|++ .+|+.|-..|.+.|++++|+.
T Consensus 715 ~~Pdv-vtyN~LI~gy~k~G~~eeAle 740 (1060)
T PLN03218 715 LRPTV-STMNALITALCEGNQLPKALE 740 (1060)
T ss_pred CCCCH-HHHHHHHHHHHHCCCHHHHHH
Confidence 44555 347777777777777777773
No 215
>PF12854 PPR_1: PPR repeat
Probab=59.27 E-value=22 Score=21.41 Aligned_cols=19 Identities=11% Similarity=0.116 Sum_probs=16.7
Q ss_pred HHHHHhcCChHHHHHHHHH
Q 027539 135 SKIALDKGKLEDAVNYGTK 153 (222)
Q Consensus 135 g~~~l~qG~~e~A~~L~~e 153 (222)
-..+...|+.++|.+++.+
T Consensus 14 I~~~Ck~G~~~~A~~l~~~ 32 (34)
T PF12854_consen 14 IDGYCKAGRVDEAFELFDE 32 (34)
T ss_pred HHHHHHCCCHHHHHHHHHh
Confidence 5778999999999999875
No 216
>PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A.
Probab=59.22 E-value=7.2 Score=35.13 Aligned_cols=49 Identities=20% Similarity=0.262 Sum_probs=32.4
Q ss_pred HHHHHHhcC--ChHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHcCChhhHh
Q 027539 134 SSKIALDKG--KLEDAVNYGTKALARMIAVCGPYHRTTASTYSLLAVVLYHTGDFNQVR 190 (222)
Q Consensus 134 ~g~~~l~qG--~~e~A~~L~~eAL~i~eqV~G~~HpevA~~y~~LA~vy~~~Gd~~eAi 190 (222)
.|-+.+..| ++++|+-.|.| +.. ..+.+...++.+|.++-++|++++|.
T Consensus 171 ~awv~l~~g~e~~~~A~y~f~E-------l~~-~~~~t~~~lng~A~~~l~~~~~~eAe 221 (290)
T PF04733_consen 171 EAWVNLATGGEKYQDAFYIFEE-------LSD-KFGSTPKLLNGLAVCHLQLGHYEEAE 221 (290)
T ss_dssp HHHHHHHHTTTCCCHHHHHHHH-------HHC-CS--SHHHHHHHHHHHHHCT-HHHHH
T ss_pred HHHHHHHhCchhHHHHHHHHHH-------HHh-ccCCCHHHHHHHHHHHHHhCCHHHHH
Confidence 344555566 46655555555 333 24556788999999999999999999
No 217
>KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=58.60 E-value=28 Score=33.25 Aligned_cols=74 Identities=15% Similarity=0.130 Sum_probs=54.9
Q ss_pred ccccccCchhHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHcCChhhHhhchHHhh
Q 027539 118 CKHVGCTSADGRTLLESSKIALDKGKLEDAVNYGTKALARMIAVCGPYHRTTASTYSLLAVVLYHTGDFNQVRQSSVVFQ 197 (222)
Q Consensus 118 VK~~~p~s~~a~~lle~g~~~l~qG~~e~A~~L~~eAL~i~eqV~G~~HpevA~~y~~LA~vy~~~Gd~~eAi~~~~~~~ 197 (222)
=|+....+.-...++..|++++..|+++.|...|.+|+.+. |.+.++..-+..|..-+..+.+.+. .+|.+-|-
T Consensus 281 ~kvLe~~~~N~KALyRrG~A~l~~~e~~~A~~df~ka~k~~-----P~Nka~~~el~~l~~k~~~~~~kek-k~y~~mF~ 354 (397)
T KOG0543|consen 281 NKVLELDPNNVKALYRRGQALLALGEYDLARDDFQKALKLE-----PSNKAARAELIKLKQKIREYEEKEK-KMYANMFA 354 (397)
T ss_pred HHHHhcCCCchhHHHHHHHHHHhhccHHHHHHHHHHHHHhC-----CCcHHHHHHHHHHHHHHHHHHHHHH-HHHHHHhh
Confidence 34455566777889999999999999999999999998764 7777777777777766666554433 34555555
No 218
>KOG3060 consensus Uncharacterized conserved protein [Function unknown]
Probab=58.39 E-value=14 Score=33.51 Aligned_cols=74 Identities=19% Similarity=0.193 Sum_probs=57.7
Q ss_pred cCchhHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHcCChhhHhhchHHhhhhhCC
Q 027539 123 CTSADGRTLLESSKIALDKGKLEDAVNYGTKALARMIAVCGPYHRTTASTYSLLAVVLYHTGDFNQVRQSSVVFQCQLGD 202 (222)
Q Consensus 123 p~s~~a~~lle~g~~~l~qG~~e~A~~L~~eAL~i~eqV~G~~HpevA~~y~~LA~vy~~~Gd~~eAi~~~~~~~~~~~~ 202 (222)
-.-.|.+.-+|.+.+|+..|.++.|.=.|.|.+- ..|-.-.++..||-++|-+|-. +=..++..|+
T Consensus 149 ~F~~D~EAW~eLaeiY~~~~~f~kA~fClEE~ll--------~~P~n~l~f~rlae~~Yt~gg~-eN~~~arkyy----- 214 (289)
T KOG3060|consen 149 KFMNDQEAWHELAEIYLSEGDFEKAAFCLEELLL--------IQPFNPLYFQRLAEVLYTQGGA-ENLELARKYY----- 214 (289)
T ss_pred HhcCcHHHHHHHHHHHHhHhHHHHHHHHHHHHHH--------cCCCcHHHHHHHHHHHHHHhhH-HHHHHHHHHH-----
Confidence 3446778888999999999999888888877763 3566667888999999999983 4445666788
Q ss_pred CCceEEEee
Q 027539 203 SKSSIIITS 211 (222)
Q Consensus 203 ~~~a~~i~e 211 (222)
.+|++|..
T Consensus 215 -~~alkl~~ 222 (289)
T KOG3060|consen 215 -ERALKLNP 222 (289)
T ss_pred -HHHHHhCh
Confidence 68998887
No 219
>cd07625 BAR_Vps17p The Bin/Amphiphysin/Rvs (BAR) domain of yeast Sorting Nexin Vps17p. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Sorting nexins (SNXs) are Phox homology (PX) domain containing proteins that are involved in regulating membrane traffic and protein sorting in the endosomal system. SNXs differ from each other in their lipid-binding specificity, subcellular localization and specific function in the endocytic pathway. A subset of SNXs also contain BAR domains. The PX-BAR structural unit determines the specific membrane targeting of SNXs. Vsp17p forms a dimer with Vps5p, the yeast counterpart of human SNX1, and is part of the retromer complex that mediates the transport of the carboxypeptidase Y receptor Vps10p from endosomes to Golgi. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions.
Probab=57.67 E-value=11 Score=33.27 Aligned_cols=78 Identities=17% Similarity=0.218 Sum_probs=56.1
Q ss_pred CcccccccccccccCchhHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHcCChhhH
Q 027539 110 DIVSMVPVCKHVGCTSADGRTLLESSKIALDKGKLEDAVNYGTKALARMIAVCGPYHRTTASTYSLLAVVLYHTGDFNQV 189 (222)
Q Consensus 110 DI~ni~PvVK~~~p~s~~a~~lle~g~~~l~qG~~e~A~~L~~eAL~i~eqV~G~~HpevA~~y~~LA~vy~~~Gd~~eA 189 (222)
.+.++-|+||..--.+.++...++. +.-....+..+..-|.+++..+-.. ..||..+.+|+.||.+....||+..+
T Consensus 19 el~~~rp~vk~~y~~~~~l~~~~~~--lvk~rr~La~~~~dfg~~l~~Ls~~--E~~~~L~~a~~kLg~v~~~v~dl~~~ 94 (230)
T cd07625 19 ELAEFRPLVKSIYLTAQDLQEKLLR--VSKARKQLSLEEADFGQKLIQLSVE--ETHHGLGNLYEKFGKVLTAVGDIDSI 94 (230)
T ss_pred HHHHhhHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHhhh--cccchHHHHHHHHHHHHHHHhhHHHH
Confidence 4678899999888777776666532 2222223555666677776666443 37899999999999999999998877
Q ss_pred hh
Q 027539 190 RQ 191 (222)
Q Consensus 190 i~ 191 (222)
.+
T Consensus 95 QA 96 (230)
T cd07625 95 QA 96 (230)
T ss_pred HH
Confidence 63
No 220
>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala. N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], [].
Probab=57.47 E-value=39 Score=33.21 Aligned_cols=54 Identities=19% Similarity=0.132 Sum_probs=44.6
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHcCChhhHh
Q 027539 129 RTLLESSKIALDKGKLEDAVNYGTKALARMIAVCGPYHRTTASTYSLLAVVLYHTGDFNQVR 190 (222)
Q Consensus 129 ~~lle~g~~~l~qG~~e~A~~L~~eAL~i~eqV~G~~HpevA~~y~~LA~vy~~~Gd~~eAi 190 (222)
+-++-...+...+|++++|++.+.+ ....-+|....+-..|.+|..+|++++|.
T Consensus 5 E~lLY~~~il~e~g~~~~AL~~L~~--------~~~~I~Dk~~~~E~rA~ll~kLg~~~eA~ 58 (517)
T PF12569_consen 5 ELLLYKNSILEEAGDYEEALEHLEK--------NEKQILDKLAVLEKRAELLLKLGRKEEAE 58 (517)
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHh--------hhhhCCCHHHHHHHHHHHHHHcCCHHHHH
Confidence 4456678889999999988888855 33455778889999999999999999999
No 221
>KOG0508 consensus Ankyrin repeat protein [General function prediction only]
Probab=57.21 E-value=11 Score=36.98 Aligned_cols=50 Identities=20% Similarity=0.175 Sum_probs=45.9
Q ss_pred HHHHHHhcCChHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHc
Q 027539 134 SSKIALDKGKLEDAVNYGTKALARMIAVCGPYHRTTASTYSLLAVVLYHT 183 (222)
Q Consensus 134 ~g~~~l~qG~~e~A~~L~~eAL~i~eqV~G~~HpevA~~y~~LA~vy~~~ 183 (222)
.|.++.++|+++.-++|+.-||.+.++..-|..|.|++.+...|.+...+
T Consensus 343 rgavyad~g~~~rCi~LWkyAL~mqQk~l~PlspmT~ssllsFaelFS~m 392 (615)
T KOG0508|consen 343 RGAVYADSGEFERCIRLWKYALDMQQKNLEPLSPMTASSLLSFAELFSFM 392 (615)
T ss_pred eeeeecCCccHHHHHHHHHHHHHHHHhhcCCCCcccHHHHHHHHHHHHHH
Confidence 36778899999999999999999999999999999999999999887654
No 222
>KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures]
Probab=56.85 E-value=48 Score=31.89 Aligned_cols=61 Identities=16% Similarity=0.128 Sum_probs=51.6
Q ss_pred HHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHcCChhhHh
Q 027539 128 GRTLLESSKIALDKGKLEDAVNYGTKALARMIAVCGPYHRTTASTYSLLAVVLYHTGDFNQVR 190 (222)
Q Consensus 128 a~~lle~g~~~l~qG~~e~A~~L~~eAL~i~eqV~G~~HpevA~~y~~LA~vy~~~Gd~~eAi 190 (222)
+--++..+..+-.+|.+.+|.+...||..+-.+- -.-+--|.|...+|-+|...||.+.|-
T Consensus 206 ~~~lyhmaValR~~G~LgdA~e~C~Ea~klal~~--Gdra~~arc~~~~aDIyR~~gd~e~af 266 (518)
T KOG1941|consen 206 AMSLYHMAVALRLLGRLGDAMECCEEAMKLALQH--GDRALQARCLLCFADIYRSRGDLERAF 266 (518)
T ss_pred HHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHh--CChHHHHHHHHHHHHHHHhcccHhHHH
Confidence 3456677888899999999999999999886552 346778999999999999999998877
No 223
>PF01649 Ribosomal_S20p: Ribosomal protein S20; InterPro: IPR002583 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This family consists of bacterial (and chloroplast) examples of the ribosomal small subunit protein S20. Bacterial ribosomal protein S20 forms part of the 30S ribosomal subunit, and interacts with 16S rRNA.; GO: 0003723 RNA binding, 0003735 structural constituent of ribosome, 0006412 translation, 0005622 intracellular, 0005840 ribosome; PDB: 1I94_T 1FJG_T 4DH9_T 3KNJ_T 3TVG_W 3UYF_W 3V28_T 3KIS_t 3HUY_T 1HNX_T ....
Probab=56.18 E-value=55 Score=24.33 Aligned_cols=44 Identities=25% Similarity=0.286 Sum_probs=34.4
Q ss_pred HHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHH--hCCCChHHHH
Q 027539 128 GRTLLESSKIALDKGKLEDAVNYGTKALARMIAV--CGPYHRTTAS 171 (222)
Q Consensus 128 a~~lle~g~~~l~qG~~e~A~~L~~eAL~i~eqV--~G~~HpevA~ 171 (222)
.+++.-.-...+..|+.++|.++|.++.+.+-+. -|.+|+-.|.
T Consensus 27 ~rT~iKk~~~ai~~~~~~~a~~~l~~a~s~iDka~~kgiihkN~Aa 72 (84)
T PF01649_consen 27 VRTAIKKFREAIEAGDKEEAKELLRKAYSAIDKAAKKGIIHKNKAA 72 (84)
T ss_dssp HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHHHHHSSSTTTHHH
T ss_pred HHHHHHHHHHHHHccChHHHHHHHHHHHHHHHHHHHcCCcchhHHH
Confidence 4455555566788999999999999999888765 4999998876
No 224
>PLN03077 Protein ECB2; Provisional
Probab=55.90 E-value=33 Score=35.01 Aligned_cols=26 Identities=12% Similarity=0.213 Sum_probs=21.4
Q ss_pred CCChHHHHHHHHHHHHHHHcCChhhHh
Q 027539 164 PYHRTTASTYSLLAVVLYHTGDFNQVR 190 (222)
Q Consensus 164 ~~HpevA~~y~~LA~vy~~~Gd~~eAi 190 (222)
.+.|++ ..|+.|..+|...|++++|.
T Consensus 620 gi~P~~-~~y~~lv~~l~r~G~~~eA~ 645 (857)
T PLN03077 620 SITPNL-KHYACVVDLLGRAGKLTEAY 645 (857)
T ss_pred CCCCch-HHHHHHHHHHHhCCCHHHHH
Confidence 356665 67888999999999999998
No 225
>COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only]
Probab=55.75 E-value=36 Score=33.30 Aligned_cols=78 Identities=9% Similarity=0.070 Sum_probs=42.0
Q ss_pred chhhHHHHHHHHHHHceee--eccccCCCCC------CCCCcCCcccccccccccccCchhHHHHHHHHHHHHhcCChHH
Q 027539 75 HLRKISILRGLCHKVGLEL--VPRDYDMDCP------NPFTRDDIVSMVPVCKHVGCTSADGRTLLESSKIALDKGKLED 146 (222)
Q Consensus 75 ~~~k~~lLR~ic~K~GIQl--~~rdY~f~~~------~~F~~~DI~ni~PvVK~~~p~s~~a~~lle~g~~~l~qG~~e~ 146 (222)
.-.+|.-+|+.+.+.--.- -.-+|.|-.. ..+...-...+.+-.+. |...-+.-- .+.....-|++++
T Consensus 249 p~~RIa~lr~ra~q~p~~~~~d~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~--~~~~aa~YG--~A~~~~~~~~~d~ 324 (484)
T COG4783 249 PEERIADLRNRAEQSPPYNKLDSPDFQLARARIRAKYEALPNQQAADLLAKRSK--RGGLAAQYG--RALQTYLAGQYDE 324 (484)
T ss_pred chhHHHHHHHHHHhCCCCCCCCCccHHHHHHHHHHHhccccccchHHHHHHHhC--ccchHHHHH--HHHHHHHhcccch
Confidence 4577888887776542211 1112222211 12322222233333333 444445443 4778888999999
Q ss_pred HHHHHHHHHH
Q 027539 147 AVNYGTKALA 156 (222)
Q Consensus 147 A~~L~~eAL~ 156 (222)
|+.++.+.+.
T Consensus 325 A~~~l~~L~~ 334 (484)
T COG4783 325 ALKLLQPLIA 334 (484)
T ss_pred HHHHHHHHHH
Confidence 9999888554
No 226
>KOG1125 consensus TPR repeat-containing protein [General function prediction only]
Probab=55.55 E-value=18 Score=35.99 Aligned_cols=22 Identities=23% Similarity=0.193 Sum_probs=14.6
Q ss_pred HHHHHhcCChHHHHHHHHHHHH
Q 027539 135 SKIALDKGKLEDAVNYGTKALA 156 (222)
Q Consensus 135 g~~~l~qG~~e~A~~L~~eAL~ 156 (222)
|-.+...|+++.|++.|+.||.
T Consensus 437 GVLy~ls~efdraiDcf~~AL~ 458 (579)
T KOG1125|consen 437 GVLYNLSGEFDRAVDCFEAALQ 458 (579)
T ss_pred HHHHhcchHHHHHHHHHHHHHh
Confidence 6666666667766666666664
No 227
>KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=55.16 E-value=60 Score=32.01 Aligned_cols=62 Identities=21% Similarity=0.268 Sum_probs=56.2
Q ss_pred HHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHcCChhhHh
Q 027539 128 GRTLLESSKIALDKGKLEDAVNYGTKALARMIAVCGPYHRTTASTYSLLAVVLYHTGDFNQVR 190 (222)
Q Consensus 128 a~~lle~g~~~l~qG~~e~A~~L~~eAL~i~eqV~G~~HpevA~~y~~LA~vy~~~Gd~~eAi 190 (222)
...++..|+.+-+-+.+++|..+|.+=+... ...|..-|++..+.--||.-+.+.+++++|.
T Consensus 466 ~~~l~~LakLye~l~d~~eAa~~yek~v~~~-~~eg~~~~~t~ka~~fLA~~f~k~~~~~~As 527 (559)
T KOG1155|consen 466 GSALVRLAKLYEELKDLNEAAQYYEKYVEVS-ELEGEIDDETIKARLFLAEYFKKMKDFDEAS 527 (559)
T ss_pred hHHHHHHHHHHHHHHhHHHHHHHHHHHHHHH-HhhcccchHHHHHHHHHHHHHHhhcchHHHH
Confidence 3667888999999999999999999988887 7789999999999999999999999999999
No 228
>PF11817 Foie-gras_1: Foie gras liver health family 1; InterPro: IPR021773 Mutating the gene foie gras in zebrafish has been shown to affect development; the mutants develop large, lipid-filled hepatocytes in the liver, resembling those in individuals with fatty liver disease []. Foie-gras protein is long and has several well-defined domains though none of them has a known function. We have annotated this one as the first []. THe C terminus of this region contains TPR repeats.
Probab=55.03 E-value=41 Score=29.28 Aligned_cols=45 Identities=16% Similarity=0.195 Sum_probs=38.2
Q ss_pred hHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHcCChhhHh
Q 027539 144 LEDAVNYGTKALARMIAVCGPYHRTTASTYSLLAVVLYHTGDFNQVR 190 (222)
Q Consensus 144 ~e~A~~L~~eAL~i~eqV~G~~HpevA~~y~~LA~vy~~~Gd~~eAi 190 (222)
-..-+++++.|...|.+- |. +..+......||.-|+..|++++|+
T Consensus 154 s~~iI~lL~~A~~~f~~~-~~-~R~~~~l~~~~A~ey~~~g~~~~A~ 198 (247)
T PF11817_consen 154 SKLIIELLEKAYEQFKKY-GQ-NRMASYLSLEMAEEYFRLGDYDKAL 198 (247)
T ss_pred HHHHHHHHHHHHHHHHHh-cc-chHHHHHHHHHHHHHHHCCCHHHHH
Confidence 446678999999888763 33 8888899999999999999999999
No 229
>KOG1586 consensus Protein required for fusion of vesicles in vesicular transport, alpha-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=54.92 E-value=35 Score=30.87 Aligned_cols=60 Identities=17% Similarity=0.200 Sum_probs=36.3
Q ss_pred hHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHcCChhhH
Q 027539 127 DGRTLLESSKIALDKGKLEDAVNYGTKALARMIAVCGPYHRTTASTYSLLAVVLYHTGDFNQV 189 (222)
Q Consensus 127 ~a~~lle~g~~~l~qG~~e~A~~L~~eAL~i~eqV~G~~HpevA~~y~~LA~vy~~~Gd~~eA 189 (222)
-++.+++++..++..|...+|-+-|-+|-+-|.++ .-.+.+.|+..--.+|-++|++.-|
T Consensus 53 AG~aflkaA~~h~k~~skhDaat~YveA~~cykk~---~~~eAv~cL~~aieIyt~~Grf~~a 112 (288)
T KOG1586|consen 53 AGDAFLKAADLHLKAGSKHDAATTYVEAANCYKKV---DPEEAVNCLEKAIEIYTDMGRFTMA 112 (288)
T ss_pred HHHHHHHHHHHHHhcCCchhHHHHHHHHHHHhhcc---ChHHHHHHHHHHHHHHHhhhHHHHH
Confidence 34445566666666666666666666666666664 2334556666666666666665543
No 230
>TIGR00029 S20 ribosomal protein S20. This family consists of bacterial (and chloroplast) examples of the bacteria ribosomal small subunit protein S20.
Probab=54.55 E-value=64 Score=24.23 Aligned_cols=45 Identities=18% Similarity=0.235 Sum_probs=35.4
Q ss_pred HHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHh--CCCChHHHHH
Q 027539 128 GRTLLESSKIALDKGKLEDAVNYGTKALARMIAVC--GPYHRTTAST 172 (222)
Q Consensus 128 a~~lle~g~~~l~qG~~e~A~~L~~eAL~i~eqV~--G~~HpevA~~ 172 (222)
.+++.-.-...+..|+.++|.++|.++.+..-+.- |.+|+-.|.-
T Consensus 28 ~kT~iKk~~~ai~~~d~~~a~~~l~~a~s~iDkaa~KgviHkN~AaR 74 (87)
T TIGR00029 28 MKTIIKKVYAAIAAGDKDKAQEAFKEAAKKLDRAARKGIIHKNKAAR 74 (87)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHCCCcchhHHHH
Confidence 34445455667788999999999999999888644 9999998763
No 231
>PLN03077 Protein ECB2; Provisional
Probab=54.54 E-value=51 Score=33.64 Aligned_cols=42 Identities=10% Similarity=0.021 Sum_probs=27.1
Q ss_pred HHHHhcCChHHHHHHHH------------------------HHHHHHHHHhCCCChHHHHHHHHHH
Q 027539 136 KIALDKGKLEDAVNYGT------------------------KALARMIAVCGPYHRTTASTYSLLA 177 (222)
Q Consensus 136 ~~~l~qG~~e~A~~L~~------------------------eAL~i~eqV~G~~HpevA~~y~~LA 177 (222)
..+...|+.++|.++|. +|+.++++......|+..+....|+
T Consensus 432 ~~y~k~g~~~~A~~vf~~m~~~d~vs~~~mi~~~~~~g~~~eA~~lf~~m~~~~~pd~~t~~~lL~ 497 (857)
T PLN03077 432 EMYSKCKCIDKALEVFHNIPEKDVISWTSIIAGLRLNNRCFEALIFFRQMLLTLKPNSVTLIAALS 497 (857)
T ss_pred HHHHHcCCHHHHHHHHHhCCCCCeeeHHHHHHHHHHCCCHHHHHHHHHHHHhCCCCCHhHHHHHHH
Confidence 45666677777776654 4666666666567787776655554
No 232
>COG0457 NrfG FOG: TPR repeat [General function prediction only]
Probab=53.96 E-value=28 Score=25.73 Aligned_cols=57 Identities=19% Similarity=0.196 Sum_probs=33.6
Q ss_pred hHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHcCChhhHh
Q 027539 127 DGRTLLESSKIALDKGKLEDAVNYGTKALARMIAVCGPYHRTTASTYSLLAVVLYHTGDFNQVR 190 (222)
Q Consensus 127 ~a~~lle~g~~~l~qG~~e~A~~L~~eAL~i~eqV~G~~HpevA~~y~~LA~vy~~~Gd~~eAi 190 (222)
.+...+..+......|.+++|...+.+++...... ....+..++..+...|++++|+
T Consensus 166 ~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~a~ 222 (291)
T COG0457 166 LAEALLALGALLEALGRYEEALELLEKALKLNPDD-------DAEALLNLGLLYLKLGKYEEAL 222 (291)
T ss_pred hHHHHHHhhhHHHHhcCHHHHHHHHHHHHhhCccc-------chHHHHHhhHHHHHcccHHHHH
Confidence 33334444444555566666666666666555444 5556666777777777777776
No 233
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=52.69 E-value=16 Score=38.45 Aligned_cols=64 Identities=17% Similarity=0.168 Sum_probs=49.9
Q ss_pred HHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHH-----hCCC---------ChHHHHHHHHHHHHHHHcCChhhHhhch
Q 027539 128 GRTLLESSKIALDKGKLEDAVNYGTKALARMIAV-----CGPY---------HRTTASTYSLLAVVLYHTGDFNQVRQSS 193 (222)
Q Consensus 128 a~~lle~g~~~l~qG~~e~A~~L~~eAL~i~eqV-----~G~~---------HpevA~~y~~LA~vy~~~Gd~~eAi~~~ 193 (222)
-..-| |+-.-++|..+-|+.+|+.|-.-|-+| .|.. -.+-|.||. ||+-|-..|++.+|++|-
T Consensus 914 L~~WW--gqYlES~GemdaAl~~Y~~A~D~fs~VrI~C~qGk~~kAa~iA~esgd~AAcYh-laR~YEn~g~v~~Av~Ff 990 (1416)
T KOG3617|consen 914 LYSWW--GQYLESVGEMDAALSFYSSAKDYFSMVRIKCIQGKTDKAARIAEESGDKAACYH-LARMYENDGDVVKAVKFF 990 (1416)
T ss_pred HHHHH--HHHHhcccchHHHHHHHHHhhhhhhheeeEeeccCchHHHHHHHhcccHHHHHH-HHHHhhhhHHHHHHHHHH
Confidence 34455 888889999999999999988877765 2433 346788886 999999999999999444
Q ss_pred H
Q 027539 194 V 194 (222)
Q Consensus 194 ~ 194 (222)
+
T Consensus 991 T 991 (1416)
T KOG3617|consen 991 T 991 (1416)
T ss_pred H
Confidence 3
No 234
>PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases. Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding
Probab=52.58 E-value=34 Score=30.12 Aligned_cols=64 Identities=22% Similarity=0.206 Sum_probs=48.4
Q ss_pred hHHHHHHHHHHHHhcCChHHHHHHHHHHHH-HHHHH-------------------------hCCCChHHHHHHHHHHHHH
Q 027539 127 DGRTLLESSKIALDKGKLEDAVNYGTKALA-RMIAV-------------------------CGPYHRTTASTYSLLAVVL 180 (222)
Q Consensus 127 ~a~~lle~g~~~l~qG~~e~A~~L~~eAL~-i~eqV-------------------------~G~~HpevA~~y~~LA~vy 180 (222)
...-.+|.++..-.+|+.++|+..+.+.+. ....- -...-...|.++..+|.-.
T Consensus 183 ~~~v~~e~akllw~~g~~~~Ai~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~l~~a~w~ 262 (352)
T PF02259_consen 183 LPRVFLEYAKLLWAQGEQEEAIQKLRELLKCRLSKNIDSISNAELKSGLLESLEVISSTNLDKESKELKAKAFLLLAKWL 262 (352)
T ss_pred CcchHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhccccccHHHHhhccccccccccccchhhhhHHHHHHHHHHHHHHH
Confidence 334467789999999999999999999988 44432 1223467788888888888
Q ss_pred HHc------CChhhHh
Q 027539 181 YHT------GDFNQVR 190 (222)
Q Consensus 181 ~~~------Gd~~eAi 190 (222)
..+ ++.++++
T Consensus 263 ~~~~~~~~~~~~~~~~ 278 (352)
T PF02259_consen 263 DELYSKLSSESSDEIL 278 (352)
T ss_pred HhhccccccccHHHHH
Confidence 888 7777777
No 235
>PF02561 FliS: Flagellar protein FliS; InterPro: IPR003713 The fliD operon of several bacteria consists of three flagellar genes, fliD, fliS, and fliT, and is transcribed in this order []. In Bacillus subtilis the operon encoding the flagellar proteins FliD, FliS, and FliT is sigma D-dependent [].; GO: 0009296 flagellum assembly, 0009288 bacterial-type flagellum; PDB: 1VH6_A 3IQC_B 3K1I_B 1ORJ_B 1ORY_A.
Probab=52.20 E-value=55 Score=25.39 Aligned_cols=56 Identities=14% Similarity=0.099 Sum_probs=43.7
Q ss_pred HHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHhCCCChHH-HHHHHHHHHHHHHc
Q 027539 128 GRTLLESSKIALDKGKLEDAVNYGTKALARMIAVCGPYHRTT-ASTYSLLAVVLYHT 183 (222)
Q Consensus 128 a~~lle~g~~~l~qG~~e~A~~L~~eAL~i~eqV~G~~Hpev-A~~y~~LA~vy~~~ 183 (222)
+-+.++.++..+.+|+++++.+-+.+|..|....-+.++++- ...-.+|..+|.-+
T Consensus 29 ai~~l~~a~~a~~~~~~~~~~~~l~ka~~Ii~~L~~~Ld~e~g~eia~~L~~lY~y~ 85 (122)
T PF02561_consen 29 AIEFLKQAKEAIEQGDIEEKNEALQKAQDIITELQSSLDFEKGGEIADNLFRLYDYM 85 (122)
T ss_dssp HHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHTCCTTTTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHhhcCCCCCcHHHHHHHHHHHHH
Confidence 345677788899999999999999999999999998888872 23445666666543
No 236
>KOG1129 consensus TPR repeat-containing protein [General function prediction only]
Probab=52.17 E-value=35 Score=32.43 Aligned_cols=60 Identities=15% Similarity=0.115 Sum_probs=47.7
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHHHHH-----------------------------HHhCCCChHHHHHHHHHHHHHH
Q 027539 131 LLESSKIALDKGKLEDAVNYGTKALARMI-----------------------------AVCGPYHRTTASTYSLLAVVLY 181 (222)
Q Consensus 131 lle~g~~~l~qG~~e~A~~L~~eAL~i~e-----------------------------qV~G~~HpevA~~y~~LA~vy~ 181 (222)
+.+.|-.++--++++.+++-|.+|++.-+ +++=...|+-+.+|+|||.+-.
T Consensus 361 f~NigLCC~yaqQ~D~~L~sf~RAlstat~~~~aaDvWYNlg~vaV~iGD~nlA~rcfrlaL~~d~~h~ealnNLavL~~ 440 (478)
T KOG1129|consen 361 FCNIGLCCLYAQQIDLVLPSFQRALSTATQPGQAADVWYNLGFVAVTIGDFNLAKRCFRLALTSDAQHGEALNNLAVLAA 440 (478)
T ss_pred HhhHHHHHHhhcchhhhHHHHHHHHhhccCcchhhhhhhccceeEEeccchHHHHHHHHHHhccCcchHHHHHhHHHHHh
Confidence 33447778888899999999999998665 2223445677889999999999
Q ss_pred HcCChhhHh
Q 027539 182 HTGDFNQVR 190 (222)
Q Consensus 182 ~~Gd~~eAi 190 (222)
.-|+.++|.
T Consensus 441 r~G~i~~Ar 449 (478)
T KOG1129|consen 441 RSGDILGAR 449 (478)
T ss_pred hcCchHHHH
Confidence 999999998
No 237
>PRK00239 rpsT 30S ribosomal protein S20; Reviewed
Probab=52.09 E-value=74 Score=23.90 Aligned_cols=45 Identities=22% Similarity=0.251 Sum_probs=35.5
Q ss_pred HHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHh--CCCChHHHHH
Q 027539 128 GRTLLESSKIALDKGKLEDAVNYGTKALARMIAVC--GPYHRTTAST 172 (222)
Q Consensus 128 a~~lle~g~~~l~qG~~e~A~~L~~eAL~i~eqV~--G~~HpevA~~ 172 (222)
.++++-.....+..|+.++|.++|.++.+..-+.- |.+|+-.|.-
T Consensus 28 ~kT~iKk~~~ai~~~~~~~a~~~~~~a~s~iDka~~KgiiHkN~AaR 74 (88)
T PRK00239 28 VRTAIKKVEAAIAAGDKEAAEEALKAAQSKIDKAASKGVIHKNKAAR 74 (88)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHCCCcchhHHHH
Confidence 34455555667778999999999999999887654 9999998763
No 238
>COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism]
Probab=51.99 E-value=23 Score=33.72 Aligned_cols=76 Identities=20% Similarity=0.174 Sum_probs=58.7
Q ss_pred CCCcCCcccccccccccccCc-------------hhHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHhCCCChHHHH
Q 027539 105 PFTRDDIVSMVPVCKHVGCTS-------------ADGRTLLESSKIALDKGKLEDAVNYGTKALARMIAVCGPYHRTTAS 171 (222)
Q Consensus 105 ~F~~~DI~ni~PvVK~~~p~s-------------~~a~~lle~g~~~l~qG~~e~A~~L~~eAL~i~eqV~G~~HpevA~ 171 (222)
-+.++ +.-.+|-++-..|.. .+..-+...|+.++.++.+.+|.+.++-|++.-- -+.
T Consensus 293 ~~D~~-L~~~~~~l~~~d~~~l~k~~e~~l~~h~~~p~L~~tLG~L~~k~~~w~kA~~~leaAl~~~~---------s~~ 362 (400)
T COG3071 293 QWDPR-LCRLIPRLRPGDPEPLIKAAEKWLKQHPEDPLLLSTLGRLALKNKLWGKASEALEAALKLRP---------SAS 362 (400)
T ss_pred ccChh-HHHHHhhcCCCCchHHHHHHHHHHHhCCCChhHHHHHHHHHHHhhHHHHHHHHHHHHHhcCC---------Chh
Confidence 45555 777777777666642 2234456679999999999999999998887533 366
Q ss_pred HHHHHHHHHHHcCChhhHh
Q 027539 172 TYSLLAVVLYHTGDFNQVR 190 (222)
Q Consensus 172 ~y~~LA~vy~~~Gd~~eAi 190 (222)
.|+.||.++-++|+..+|.
T Consensus 363 ~~~~la~~~~~~g~~~~A~ 381 (400)
T COG3071 363 DYAELADALDQLGEPEEAE 381 (400)
T ss_pred hHHHHHHHHHHcCChHHHH
Confidence 7899999999999999998
No 239
>KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics]
Probab=51.91 E-value=10 Score=38.37 Aligned_cols=63 Identities=11% Similarity=0.070 Sum_probs=46.9
Q ss_pred HHHHHHhcCChHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHcCChhhHhhchHHhhhhhCCCCceEEEeeee
Q 027539 134 SSKIALDKGKLEDAVNYGTKALARMIAVCGPYHRTTASTYSLLAVVLYHTGDFNQVRQSSVVFQCQLGDSKSSIIITSFC 213 (222)
Q Consensus 134 ~g~~~l~qG~~e~A~~L~~eAL~i~eqV~G~~HpevA~~y~~LA~vy~~~Gd~~eAi~~~~~~~~~~~~~~~a~~i~e~~ 213 (222)
.|-+...-|+.++|+++-.-++. ..+----|++.+|-++....+|++|+ -+| ++|+.|.---
T Consensus 47 kGL~L~~lg~~~ea~~~vr~glr--------~d~~S~vCwHv~gl~~R~dK~Y~eai----Kcy------~nAl~~~~dN 108 (700)
T KOG1156|consen 47 KGLTLNCLGKKEEAYELVRLGLR--------NDLKSHVCWHVLGLLQRSDKKYDEAI----KCY------RNALKIEKDN 108 (700)
T ss_pred ccchhhcccchHHHHHHHHHHhc--------cCcccchhHHHHHHHHhhhhhHHHHH----HHH------HHHHhcCCCc
Confidence 36677777888888888877765 23334468999999999999999999 666 6777765433
Q ss_pred c
Q 027539 214 T 214 (222)
Q Consensus 214 ~ 214 (222)
.
T Consensus 109 ~ 109 (700)
T KOG1156|consen 109 L 109 (700)
T ss_pred H
Confidence 3
No 240
>COG1516 FliS Flagellin-specific chaperone FliS [Cell motility and secretion / Intracellular trafficking and secretion / Posttranslational modification, protein turnover, chaperones]
Probab=50.23 E-value=80 Score=25.68 Aligned_cols=54 Identities=13% Similarity=0.136 Sum_probs=43.1
Q ss_pred HHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHhCCCChHH-HHHHHHHHHHHH
Q 027539 128 GRTLLESSKIALDKGKLEDAVNYGTKALARMIAVCGPYHRTT-ASTYSLLAVVLY 181 (222)
Q Consensus 128 a~~lle~g~~~l~qG~~e~A~~L~~eAL~i~eqV~G~~Hpev-A~~y~~LA~vy~ 181 (222)
+-+.+..|+..+.+|+++++.+.+.+|..|+...--.+.+|- ..-.-+|..+|.
T Consensus 31 ~l~~l~~A~~aie~~~i~~k~~~i~ka~~Ii~eL~~~Ld~E~Ggeia~nL~~LY~ 85 (132)
T COG1516 31 ALKFLKRAKEAIEQEDIEEKNESIDKAIDIITELRASLDYEKGGEIAQNLDALYD 85 (132)
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHhcCHhhcchHHHHHHHHHH
Confidence 457788899999999999999999999999998887777774 344445555554
No 241
>PRK15331 chaperone protein SicA; Provisional
Probab=50.10 E-value=28 Score=29.32 Aligned_cols=51 Identities=10% Similarity=0.049 Sum_probs=41.6
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHcCChhhHh
Q 027539 132 LESSKIALDKGKLEDAVNYGTKALARMIAVCGPYHRTTASTYSLLAVVLYHTGDFNQVR 190 (222)
Q Consensus 132 le~g~~~l~qG~~e~A~~L~~eAL~i~eqV~G~~HpevA~~y~~LA~vy~~~Gd~~eAi 190 (222)
+-.|-++-.+|+++.|+++|.-|..+-.+=++| +...|..|..+|+.++|.
T Consensus 75 ~GLaa~~Q~~k~y~~Ai~~Y~~A~~l~~~dp~p--------~f~agqC~l~l~~~~~A~ 125 (165)
T PRK15331 75 MGLAAVCQLKKQFQKACDLYAVAFTLLKNDYRP--------VFFTGQCQLLMRKAAKAR 125 (165)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHcccCCCCc--------cchHHHHHHHhCCHHHHH
Confidence 444888889999999999998888876555555 456788888999999999
No 242
>KOG3364 consensus Membrane protein involved in organellar division [Cell wall/membrane/envelope biogenesis]
Probab=49.50 E-value=22 Score=29.41 Aligned_cols=84 Identities=7% Similarity=0.046 Sum_probs=58.3
Q ss_pred chhHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHhCCCChHH-HHHHHHHHHHHHHcCChhhHhhchHHhhhhhCCC
Q 027539 125 SADGRTLLESSKIALDKGKLEDAVNYGTKALARMIAVCGPYHRTT-ASTYSLLAVVLYHTGDFNQVRQSSVVFQCQLGDS 203 (222)
Q Consensus 125 s~~a~~lle~g~~~l~qG~~e~A~~L~~eAL~i~eqV~G~~Hpev-A~~y~~LA~vy~~~Gd~~eAi~~~~~~~~~~~~~ 203 (222)
+......|+-+-..+...+.+ --++-+.++|.++-.-||+= -.|...||.-+|.+|+|+.|+-|-..+-..-+|.
T Consensus 29 ~~s~~s~f~lAwaLV~S~~~~----dv~~GI~iLe~l~~~~~~~~rRe~lyYLAvg~yRlkeY~~s~~yvd~ll~~e~~n 104 (149)
T KOG3364|consen 29 DVSKQSQFNLAWALVRSRDTE----DVQEGIVILEDLLKSAHPERRRECLYYLAVGHYRLKEYSKSLRYVDALLETEPNN 104 (149)
T ss_pred cchHHHHHHHHHHHHcccchH----HHHHhHHHHHHHhhhcCcccchhhhhhhHHHHHHHhhHHHHHHHHHHHHhhCCCc
Confidence 334445555555555444333 35678888999997677764 5789999999999999999997766666555666
Q ss_pred CceEEEeee
Q 027539 204 KSSIIITSF 212 (222)
Q Consensus 204 ~~a~~i~e~ 212 (222)
++|....+.
T Consensus 105 ~Qa~~Lk~~ 113 (149)
T KOG3364|consen 105 RQALELKET 113 (149)
T ss_pred HHHHHHHHH
Confidence 666665544
No 243
>PF07720 TPR_3: Tetratricopeptide repeat; InterPro: IPR011716 This entry includes tetratricopeptide-like repeats found in the LcrH/SycD-like chaperones [].; PDB: 3KS2_O 3GZ2_A 3GZ1_A 3GYZ_A 4AM9_A 2VGX_A 2VGY_A.
Probab=49.31 E-value=58 Score=20.22 Aligned_cols=22 Identities=23% Similarity=0.318 Sum_probs=16.9
Q ss_pred HHHHHHHHHhcCChHHHHHHHH
Q 027539 131 LLESSKIALDKGKLEDAVNYGT 152 (222)
Q Consensus 131 lle~g~~~l~qG~~e~A~~L~~ 152 (222)
+..-|-.+.++|++++|..+|+
T Consensus 4 ~y~~a~~~y~~~ky~~A~~~~~ 25 (36)
T PF07720_consen 4 LYGLAYNFYQKGKYDEAIHFFQ 25 (36)
T ss_dssp HHHHHHHHHHTT-HHHHHHHHH
T ss_pred HHHHHHHHHHHhhHHHHHHHHH
Confidence 3445788889999999999965
No 244
>KOG0495 consensus HAT repeat protein [RNA processing and modification]
Probab=49.26 E-value=30 Score=35.49 Aligned_cols=49 Identities=14% Similarity=0.175 Sum_probs=38.6
Q ss_pred HHHHHHhcCChHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHcCChhhHh
Q 027539 134 SSKIALDKGKLEDAVNYGTKALARMIAVCGPYHRTTASTYSLLAVVLYHTGDFNQVR 190 (222)
Q Consensus 134 ~g~~~l~qG~~e~A~~L~~eAL~i~eqV~G~~HpevA~~y~~LA~vy~~~Gd~~eAi 190 (222)
.+..---+|+.++|..|++++|..| |+--+.|..+++++.++|+.+.|.
T Consensus 657 s~~~er~ld~~eeA~rllEe~lk~f--------p~f~Kl~lmlGQi~e~~~~ie~aR 705 (913)
T KOG0495|consen 657 SANLERYLDNVEEALRLLEEALKSF--------PDFHKLWLMLGQIEEQMENIEMAR 705 (913)
T ss_pred HhHHHHHhhhHHHHHHHHHHHHHhC--------CchHHHHHHHhHHHHHHHHHHHHH
Confidence 3344445677788888888887665 666788999999999999999998
No 245
>PLN03218 maturation of RBCL 1; Provisional
Probab=48.56 E-value=30 Score=36.91 Aligned_cols=48 Identities=15% Similarity=0.188 Sum_probs=23.8
Q ss_pred HHHHhcCChHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHcCChhhHh
Q 027539 136 KIALDKGKLEDAVNYGTKALARMIAVCGPYHRTTASTYSLLAVVLYHTGDFNQVR 190 (222)
Q Consensus 136 ~~~l~qG~~e~A~~L~~eAL~i~eqV~G~~HpevA~~y~~LA~vy~~~Gd~~eAi 190 (222)
..+...|++++|.++|.+.... | +-| ...+|+.|-..|.+.|++++|.
T Consensus 587 ~ay~k~G~ldeA~elf~~M~e~-----g-i~p-~~~tynsLI~ay~k~G~~deAl 634 (1060)
T PLN03218 587 KACANAGQVDRAKEVYQMIHEY-----N-IKG-TPEVYTIAVNSCSQKGDWDFAL 634 (1060)
T ss_pred HHHHHCCCHHHHHHHHHHHHHc-----C-CCC-ChHHHHHHHHHHHhcCCHHHHH
Confidence 4455666666666655544321 1 111 2234555555555555555555
No 246
>KOG3616 consensus Selective LIM binding factor [Transcription]
Probab=48.31 E-value=13 Score=38.72 Aligned_cols=82 Identities=15% Similarity=0.139 Sum_probs=59.6
Q ss_pred HHHHHHHHHHHHhcCChHHHHHHHH-------------------HHHHHHHHHh-----CCCChHHHHHHHHHH------
Q 027539 128 GRTLLESSKIALDKGKLEDAVNYGT-------------------KALARMIAVC-----GPYHRTTASTYSLLA------ 177 (222)
Q Consensus 128 a~~lle~g~~~l~qG~~e~A~~L~~-------------------eAL~i~eqV~-----G~~HpevA~~y~~LA------ 177 (222)
-++.| |-...++|+++-|+.-|- +|++|.+++. ...-|++|.-|.+++
T Consensus 708 lee~w--g~hl~~~~q~daainhfiea~~~~kaieaai~akew~kai~ildniqdqk~~s~yy~~iadhyan~~dfe~ae 785 (1636)
T KOG3616|consen 708 LEEAW--GDHLEQIGQLDAAINHFIEANCLIKAIEAAIGAKEWKKAISILDNIQDQKTASGYYGEIADHYANKGDFEIAE 785 (1636)
T ss_pred HHHHH--hHHHHHHHhHHHHHHHHHHhhhHHHHHHHHhhhhhhhhhHhHHHHhhhhccccccchHHHHHhccchhHHHHH
Confidence 35566 677777888887776554 4566776544 345677888777765
Q ss_pred HHHHHcCChhhHhhchHHhhhhhCCCCceEEEeeeech
Q 027539 178 VVLYHTGDFNQVRQSSVVFQCQLGDSKSSIIITSFCTE 215 (222)
Q Consensus 178 ~vy~~~Gd~~eAi~~~~~~~~~~~~~~~a~~i~e~~~~ 215 (222)
.+|-..|.+.+|+ -.|-+.|.+..|.++.|+|+|
T Consensus 786 ~lf~e~~~~~dai----~my~k~~kw~da~kla~e~~~ 819 (1636)
T KOG3616|consen 786 ELFTEADLFKDAI----DMYGKAGKWEDAFKLAEECHG 819 (1636)
T ss_pred HHHHhcchhHHHH----HHHhccccHHHHHHHHHHhcC
Confidence 4666777777888 788889999999999988876
No 247
>TIGR00208 fliS flagellar biosynthetic protein FliS. The function of this protein in flagellar biosynthesis is unknown, but appears to be regulatory. The member of this family in Vibrio parahaemolyticus is designated FlaJ (creating a synonym for FliS) and was shown essential for flagellin biosynthesis.
Probab=47.72 E-value=77 Score=24.97 Aligned_cols=54 Identities=11% Similarity=0.038 Sum_probs=40.3
Q ss_pred HHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHhCCCChHH-HHHHHHHHHHHH
Q 027539 128 GRTLLESSKIALDKGKLEDAVNYGTKALARMIAVCGPYHRTT-ASTYSLLAVVLY 181 (222)
Q Consensus 128 a~~lle~g~~~l~qG~~e~A~~L~~eAL~i~eqV~G~~Hpev-A~~y~~LA~vy~ 181 (222)
+-..+..++..+.+|+++++.+-+.+|..|....-+.+..+. ...=.+|..+|.
T Consensus 31 ~i~~l~~a~~ai~~~d~~~~~~~i~ka~~Ii~eL~~~Ld~e~ggeiA~nL~~LY~ 85 (124)
T TIGR00208 31 CLKFIRLAAQAIENDDIERKNENLIKAQNIIQELNFTLDREKNIELSASLGALYD 85 (124)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHhhcCCccchHHHHHHHHHHH
Confidence 345677888999999999999999999999998888775432 122234555554
No 248
>KOG2997 consensus F-box protein FBX9 [General function prediction only]
Probab=45.72 E-value=20 Score=33.55 Aligned_cols=55 Identities=24% Similarity=0.222 Sum_probs=46.0
Q ss_pred cccccccCchhHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHH
Q 027539 117 VCKHVGCTSADGRTLLESSKIALDKGKLEDAVNYGTKALARMIAVCGPYHRTTASTYSLLAVV 179 (222)
Q Consensus 117 vVK~~~p~s~~a~~lle~g~~~l~qG~~e~A~~L~~eAL~i~eqV~G~~HpevA~~y~~LA~v 179 (222)
+-+...|....|..+|+.|-..-+.|.+-+|+++|..|+. +|||+-..|..+=..
T Consensus 8 ~~~ekd~~~kkA~~l~~~av~~Eq~G~l~dai~fYR~Alq--------I~~diEs~~r~l~~~ 62 (366)
T KOG2997|consen 8 VDYEKDPLAKKAIALYEKAVLKEQDGSLYDAINFYRDALQ--------IVPDIESKYRYLRSP 62 (366)
T ss_pred cccccchHHHHHHHHHHHHHHHhhcCcHHHHHHHHHhhhc--------CCchHHHHHHHHhhh
Confidence 3345667888999999999999999999999999999996 588888888844443
No 249
>TIGR03362 VI_chp_7 type VI secretion-associated protein, VC_A0119 family. This protein family is one of two related families in type VI secretion systems that contain an ImpA-related N-terminal domain (pfam06812).
Probab=45.65 E-value=1.6e+02 Score=26.84 Aligned_cols=135 Identities=19% Similarity=0.141 Sum_probs=77.1
Q ss_pred hhHHHHHHHhccccccccccccc------chhhHHHHHHHHHHHceee----eccccCCCCCCCCCcCCccccc-ccccc
Q 027539 52 LRLQWLRTFLGRRFGWSLKDEFQ------HLRKISILRGLCHKVGLEL----VPRDYDMDCPNPFTRDDIVSMV-PVCKH 120 (222)
Q Consensus 52 ~~~~~i~~~v~~rfry~L~~~~~------~~~k~~lLR~ic~K~GIQl----~~rdY~f~~~~~F~~~DI~ni~-PvVK~ 120 (222)
.+|..+++-+.. +.|-|+..|. .+..-..-..|+.-+..=| ...+-.|+..+||..+.-.+-+ .-+..
T Consensus 117 ~Ll~~~E~sl~~-~pfWLDgq~~~~qal~~lG~~~~a~aI~~el~~fL~RlP~L~~L~F~DGtPFad~~T~~WL~~~~~~ 195 (301)
T TIGR03362 117 ALLQRVEQSLSL-APFWLDGQRLSAQALERLGYAAVAQAIRDELAAFLERLPGLLELKFSDGTPFADDETRAWLAQHATR 195 (301)
T ss_pred HHHHHHHHHHHh-CchhhHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhCcChhhcccCCCCCCCCHHHHHHHHhcccc
Confidence 445555554333 7777776553 2222233333333332211 2345678888899877765554 11111
Q ss_pred c----------ccCchhHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHcCChhhHh
Q 027539 121 V----------GCTSADGRTLLESSKIALDKGKLEDAVNYGTKALARMIAVCGPYHRTTASTYSLLAVVLYHTGDFNQVR 190 (222)
Q Consensus 121 ~----------~p~s~~a~~lle~g~~~l~qG~~e~A~~L~~eAL~i~eqV~G~~HpevA~~y~~LA~vy~~~Gd~~eAi 190 (222)
. .....+..+..+.++.+..+|.+++|+.++++.+.-. .--++=..--..+|+++.+.|.++-|.
T Consensus 196 ~~~~~~~~~~~~~~~~~~~~~~~eA~~l~~~~gl~~Al~~L~~~~~~~-----~s~R~rf~~rL~~A~l~~~~g~~~lA~ 270 (301)
T TIGR03362 196 SNAASVAPVAEVGEESDWEELREEARALAAEGGLEAALQRLQQRLAQA-----REPRERFHWRLLLARLLEQAGKAELAQ 270 (301)
T ss_pred cccccccccccCcccccHHHHHHHHHHHHHcCCHHHHHHHHHhhcccC-----CChHHHHHHHHHHHHHHHHcCCHHHHH
Confidence 1 1112345677788999999999998888877653310 111222233356789999999999998
Q ss_pred hc
Q 027539 191 QS 192 (222)
Q Consensus 191 ~~ 192 (222)
..
T Consensus 271 ~l 272 (301)
T TIGR03362 271 QL 272 (301)
T ss_pred HH
Confidence 33
No 250
>COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown]
Probab=45.63 E-value=72 Score=28.14 Aligned_cols=28 Identities=18% Similarity=0.210 Sum_probs=21.0
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHHH
Q 027539 129 RTLLESSKIALDKGKLEDAVNYGTKALA 156 (222)
Q Consensus 129 ~~lle~g~~~l~qG~~e~A~~L~~eAL~ 156 (222)
.+-+..|.....-|++.||.+.|.||++
T Consensus 90 qnr~rLa~al~elGr~~EA~~hy~qals 117 (251)
T COG4700 90 QNRYRLANALAELGRYHEAVPHYQQALS 117 (251)
T ss_pred HHHHHHHHHHHHhhhhhhhHHHHHHHhc
Confidence 3445556777778888999999988875
No 251
>PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=44.88 E-value=73 Score=26.67 Aligned_cols=69 Identities=17% Similarity=0.190 Sum_probs=48.6
Q ss_pred cCCcccccccccccccCchhHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHcCCh
Q 027539 108 RDDIVSMVPVCKHVGCTSADGRTLLESSKIALDKGKLEDAVNYGTKALARMIAVCGPYHRTTASTYSLLAVVLYHTGDF 186 (222)
Q Consensus 108 ~~DI~ni~PvVK~~~p~s~~a~~lle~g~~~l~qG~~e~A~~L~~eAL~i~eqV~G~~HpevA~~y~~LA~vy~~~Gd~ 186 (222)
++|+--++=-+.-..|..+....+ .|..++..|++.+|..++++. ..-.|....|=-.+|..++.+||.
T Consensus 26 ~~D~e~lL~ALrvLRP~~~e~~~~--~~~l~i~r~~w~dA~rlLr~l--------~~~~~~~p~~kALlA~CL~~~~D~ 94 (160)
T PF09613_consen 26 PDDAEALLDALRVLRPEFPELDLF--DGWLHIVRGDWDDALRLLREL--------EERAPGFPYAKALLALCLYALGDP 94 (160)
T ss_pred hHHHHHHHHHHHHhCCCchHHHHH--HHHHHHHhCCHHHHHHHHHHH--------hccCCCChHHHHHHHHHHHHcCCh
Confidence 345544544555556777666665 499999999999888888774 233465666666788899999985
No 252
>PRK11906 transcriptional regulator; Provisional
Probab=44.83 E-value=58 Score=31.71 Aligned_cols=77 Identities=14% Similarity=0.078 Sum_probs=52.3
Q ss_pred ccCch---hHH--HHHHHHHHHHhcCChH---HHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHc---C--Chhh
Q 027539 122 GCTSA---DGR--TLLESSKIALDKGKLE---DAVNYGTKALARMIAVCGPYHRTTASTYSLLAVVLYHT---G--DFNQ 188 (222)
Q Consensus 122 ~p~s~---~a~--~lle~g~~~l~qG~~e---~A~~L~~eAL~i~eqV~G~~HpevA~~y~~LA~vy~~~---G--d~~e 188 (222)
.|.+. +|. .++-.|+..+.++..+ .|+.+|.+|++. .+..|+-|.+|..||.+|... | +.+.
T Consensus 244 ~~~~l~~~~a~~~d~ylrg~~~~~~~t~~~~~~Al~lf~ra~~~-----~~ldp~~a~a~~~lA~~h~~~~~~g~~~~~~ 318 (458)
T PRK11906 244 AKQDQGYKNHYLSDEMLAGKKELYDFTPESIYRAMTIFDRLQNK-----SDIQTLKTECYCLLAECHMSLALHGKSELEL 318 (458)
T ss_pred CCCCcccccchhhHHHHHHHHHhhccCHHHHHHHHHHHHHHhhc-----ccCCcccHHHHHHHHHHHHHHHHhcCCCchH
Confidence 45666 888 8899999999998543 444555555432 478999999999999998765 1 2344
Q ss_pred HhhchHHhhhhhCCCCceEEE
Q 027539 189 VRQSSVVFQCQLGDSKSSIII 209 (222)
Q Consensus 189 Ai~~~~~~~~~~~~~~~a~~i 209 (222)
+.+-..++. ++|+.+
T Consensus 319 ~~~~a~~~A------~rAvel 333 (458)
T PRK11906 319 AAQKALELL------DYVSDI 333 (458)
T ss_pred HHHHHHHHH------HHHHhc
Confidence 444444666 555544
No 253
>COG2976 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=43.95 E-value=63 Score=28.22 Aligned_cols=67 Identities=18% Similarity=0.073 Sum_probs=46.4
Q ss_pred cccccCchhHH-HHHHHHHHHHhcCChHHHHHHHHHHHHHHH-HHhCCCChHHHHHHHHHHHHHHHcCChhhHhh
Q 027539 119 KHVGCTSADGR-TLLESSKIALDKGKLEDAVNYGTKALARMI-AVCGPYHRTTASTYSLLAVVLYHTGDFNQVRQ 191 (222)
Q Consensus 119 K~~~p~s~~a~-~lle~g~~~l~qG~~e~A~~L~~eAL~i~e-qV~G~~HpevA~~y~~LA~vy~~~Gd~~eAi~ 191 (222)
....+++..|. ..++.++.+...|++++|..-+++++.--. ..++ +-.=..||+|..++|.+++|..
T Consensus 79 ~~~n~~t~Ya~laaL~lAk~~ve~~~~d~A~aqL~~~l~~t~De~lk------~l~~lRLArvq~q~~k~D~AL~ 147 (207)
T COG2976 79 VQANGKTIYAVLAALELAKAEVEANNLDKAEAQLKQALAQTKDENLK------ALAALRLARVQLQQKKADAALK 147 (207)
T ss_pred HhhccccHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHccchhHHHH------HHHHHHHHHHHHHhhhHHHHHH
Confidence 34555555543 678899999999999988888777773211 1111 1223468999999999999983
No 254
>KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms]
Probab=43.26 E-value=70 Score=30.68 Aligned_cols=67 Identities=27% Similarity=0.311 Sum_probs=48.1
Q ss_pred CchhHHHHHHHHHHHHhcCChHHHHHHHHHHHH----HHHHHh---------C-------------CCChHHHHHHHHHH
Q 027539 124 TSADGRTLLESSKIALDKGKLEDAVNYGTKALA----RMIAVC---------G-------------PYHRTTASTYSLLA 177 (222)
Q Consensus 124 ~s~~a~~lle~g~~~l~qG~~e~A~~L~~eAL~----i~eqV~---------G-------------~~HpevA~~y~~LA 177 (222)
..+++..-+|.|+.++..|++.+|++-|..|+. -|+.+| | .+-||-+.+--.-+
T Consensus 34 ~~advekhlElGk~lla~~Q~sDALt~yHaAve~dp~~Y~aifrRaT~yLAmGksk~al~Dl~rVlelKpDF~~ARiQRg 113 (504)
T KOG0624|consen 34 SPADVEKHLELGKELLARGQLSDALTHYHAAVEGDPNNYQAIFRRATVYLAMGKSKAALQDLSRVLELKPDFMAARIQRG 113 (504)
T ss_pred CHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHcCCchhHHHHHHHHHHHhhhcCCccchhhHHHHHhcCccHHHHHHHhc
Confidence 347788899999999999999999999998874 122211 1 23455556666666
Q ss_pred HHHHHcCChhhHh
Q 027539 178 VVLYHTGDFNQVR 190 (222)
Q Consensus 178 ~vy~~~Gd~~eAi 190 (222)
.|+.++|++++|+
T Consensus 114 ~vllK~Gele~A~ 126 (504)
T KOG0624|consen 114 VVLLKQGELEQAE 126 (504)
T ss_pred hhhhhcccHHHHH
Confidence 7777777777776
No 255
>PF04910 Tcf25: Transcriptional repressor TCF25; InterPro: IPR006994 This entry appears to represent a novel family of basic helix-loop-helix (bHLH) proteins that control differentiation and development of a variety of organs [, ]. Human Nulp1 (Q2MK75 from SWISSPROT) is a basic helix-loop-helix protein expressed broadly during early embryonic organogenesis. Over expression of human Nulp1 in COS-7 cells inhibits the transcriptional activity of serum response factor (SRF), suggesting that Nulp1 may act as a novel bHLH transcriptional repressor in the SRF signalling pathway to mediate cellular functions [].
Probab=43.13 E-value=16 Score=34.04 Aligned_cols=42 Identities=14% Similarity=0.085 Sum_probs=34.7
Q ss_pred CCChHHHHHHHHHHHHHHHcCChhhHhhchHHhhhhhCCCCceEEEeeeech
Q 027539 164 PYHRTTASTYSLLAVVLYHTGDFNQVRQSSVVFQCQLGDSKSSIIITSFCTE 215 (222)
Q Consensus 164 ~~HpevA~~y~~LA~vy~~~Gd~~eAi~~~~~~~~~~~~~~~a~~i~e~~~~ 215 (222)
..||-=..++..+|.|+.++||++.|- ++- +|||-+-||++-
T Consensus 34 ~~~PyHidtLlqls~v~~~~gd~~~A~----~ll------eRALf~~e~~~~ 75 (360)
T PF04910_consen 34 QKNPYHIDTLLQLSEVYRQQGDHAQAN----DLL------ERALFAFERAFH 75 (360)
T ss_pred HHCCCcHHHHHHHHHHHHHcCCHHHHH----HHH------HHHHHHHHHHHH
Confidence 456666778999999999999999999 777 788877777654
No 256
>KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=43.11 E-value=35 Score=34.36 Aligned_cols=48 Identities=21% Similarity=0.258 Sum_probs=35.5
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHcCChhhHh
Q 027539 132 LESSKIALDKGKLEDAVNYGTKALARMIAVCGPYHRTTASTYSLLAVVLYHTGDFNQVR 190 (222)
Q Consensus 132 le~g~~~l~qG~~e~A~~L~~eAL~i~eqV~G~~HpevA~~y~~LA~vy~~~Gd~~eAi 190 (222)
||.+=.....++.++|+..++ ...++.-.....=|++.|.+|+|++|.
T Consensus 83 fEKAYc~Yrlnk~Dealk~~~-----------~~~~~~~~ll~L~AQvlYrl~~ydeal 130 (652)
T KOG2376|consen 83 FEKAYCEYRLNKLDEALKTLK-----------GLDRLDDKLLELRAQVLYRLERYDEAL 130 (652)
T ss_pred HHHHHHHHHcccHHHHHHHHh-----------cccccchHHHHHHHHHHHHHhhHHHHH
Confidence 677888888888887777665 233444556677788888888888888
No 257
>COG2909 MalT ATP-dependent transcriptional regulator [Transcription]
Probab=42.96 E-value=72 Score=33.52 Aligned_cols=75 Identities=17% Similarity=0.123 Sum_probs=55.2
Q ss_pred cccccCchhHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHcCChhhHhhchHHh
Q 027539 119 KHVGCTSADGRTLLESSKIALDKGKLEDAVNYGTKALARMIAVCGPYHRTTASTYSLLAVVLYHTGDFNQVRQSSVVF 196 (222)
Q Consensus 119 K~~~p~s~~a~~lle~g~~~l~qG~~e~A~~L~~eAL~i~eqV~G~~HpevA~~y~~LA~vy~~~Gd~~eAi~~~~~~ 196 (222)
+|+...-..|+-.-=.|++.+.+|+.++|.++..+++.. +-+..-..=+.|++.+|.+..-.|++++|..+....
T Consensus 449 ~~~~~~~l~ae~~aL~a~val~~~~~e~a~~lar~al~~---L~~~~~~~r~~~~sv~~~a~~~~G~~~~Al~~~~~a 523 (894)
T COG2909 449 MHSRQGDLLAEFQALRAQVALNRGDPEEAEDLARLALVQ---LPEAAYRSRIVALSVLGEAAHIRGELTQALALMQQA 523 (894)
T ss_pred cccchhhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHh---cccccchhhhhhhhhhhHHHHHhchHHHHHHHHHHH
Confidence 344444444544444688999999999999999998863 333444455789999999999999999999544443
No 258
>PF02255 PTS_IIA: PTS system, Lactose/Cellobiose specific IIA subunit; InterPro: IPR003188 The phosphoenolpyruvate-dependent sugar phosphotransferase system (PTS) [, ] is a major carbohydrate transport system in bacteria. The PTS catalyses the phosphorylation of incoming sugar substrates and coupled with translocation across the cell membrane, makes the PTS a link between the uptake and metabolism of sugars. The general mechanism of the PTS is the following: a phosphoryl group from phosphoenolpyruvate (PEP) is transferred via a signal transduction pathway, to enzyme I (EI) which in turn transfers it to a phosphoryl carrier, the histidine protein (HPr). Phospho-HPr then transfers the phosphoryl group to a sugar-specific permease, a membrane-bound complex known as enzyme 2 (EII), which transports the sugar to the cell. EII consists of at least three structurally distinct domains IIA, IIB and IIC []. These can either be fused together in a single polypeptide chain or exist as two or three interactive chains, formerly called enzymes II (EII) and III (EIII). The first domain (IIA or EIIA) carries the first permease-specific phosphorylation site, a histidine which is phosphorylated by phospho-HPr. The second domain (IIB or EIIB) is phosphorylated by phospho-IIA on a cysteinyl or histidyl residue, depending on the sugar transported. Finally, the phosphoryl group is transferred from the IIB domain to the sugar substrate concomitantly with the sugar uptake processed by the IIC domain. This third domain (IIC or EIIC) forms the translocation channel and the specific substrate-binding site. An additional transmembrane domain IID, homologous to IIC, can be found in some PTSs, e.g. for mannose [, , , ]. The lactose/cellobiose-specific family are one of four structurally and functionally distinct group IIA PTS system enzymes. This family of proteins normally function as a homotrimer, stabilised by a centrally located metal ion []. Separation into subunits is thought to occur after phosphorylation.; GO: 0005351 sugar:hydrogen symporter activity, 0006810 transport, 0009401 phosphoenolpyruvate-dependent sugar phosphotransferase system, 0016020 membrane; PDB: 3L8R_D 2E2A_B 1E2A_C 3K1S_C 2LRK_C 2LRL_A 2WY2_A 1WCR_A 2WWV_C.
Probab=42.40 E-value=74 Score=24.13 Aligned_cols=37 Identities=22% Similarity=0.276 Sum_probs=29.5
Q ss_pred CchhHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHH
Q 027539 124 TSADGRTLLESSKIALDKGKLEDAVNYGTKALARMIA 160 (222)
Q Consensus 124 ~s~~a~~lle~g~~~l~qG~~e~A~~L~~eAL~i~eq 160 (222)
.+.+|+...-.|-....+|++++|.+++.+|-.-+.+
T Consensus 10 ~aG~Ars~~~eAl~~a~~~~fe~A~~~l~~a~~~l~~ 46 (96)
T PF02255_consen 10 HAGDARSLAMEALKAAREGDFEEAEELLKEADEELLK 46 (96)
T ss_dssp HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHH
Confidence 3578888888888888999999999999988775544
No 259
>KOG0545 consensus Aryl-hydrocarbon receptor-interacting protein [Posttranslational modification, protein turnover, chaperones]
Probab=42.05 E-value=78 Score=29.01 Aligned_cols=65 Identities=11% Similarity=0.102 Sum_probs=50.8
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHhC---CCChH-------HHHHHHHHHHHHHHcCChhhHhhchH
Q 027539 130 TLLESSKIALDKGKLEDAVNYGTKALARMIAVCG---PYHRT-------TASTYSLLAVVLYHTGDFNQVRQSSV 194 (222)
Q Consensus 130 ~lle~g~~~l~qG~~e~A~~L~~eAL~i~eqV~G---~~Hpe-------vA~~y~~LA~vy~~~Gd~~eAi~~~~ 194 (222)
.+-+.|.-...+|+++||..-|.+|+....+.-- |--|+ .-.-|.|.++.+...|||-+++..+.
T Consensus 180 ~l~q~GN~lfk~~~ykEA~~~YreAi~~l~~L~lkEkP~e~eW~eLdk~~tpLllNy~QC~L~~~e~yevleh~s 254 (329)
T KOG0545|consen 180 VLHQEGNRLFKLGRYKEASSKYREAIICLRNLQLKEKPGEPEWLELDKMITPLLLNYCQCLLKKEEYYEVLEHCS 254 (329)
T ss_pred HHHHhhhhhhhhccHHHHHHHHHHHHHHHHHHHhccCCCChHHHHHHHhhhHHHHhHHHHHhhHHHHHHHHHHHH
Confidence 4567788899999999999999999999887763 33333 33457788999999999999984433
No 260
>PF14863 Alkyl_sulf_dimr: Alkyl sulfatase dimerisation; PDB: 2YHE_C 2CG2_A 2CG3_A 2CFU_A 2CFZ_A.
Probab=41.58 E-value=65 Score=26.21 Aligned_cols=56 Identities=20% Similarity=0.178 Sum_probs=40.0
Q ss_pred hhHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHcCChhhH
Q 027539 126 ADGRTLLESSKIALDKGKLEDAVNYGTKALARMIAVCGPYHRTTASTYSLLAVVLYHTGDFNQV 189 (222)
Q Consensus 126 ~~a~~lle~g~~~l~qG~~e~A~~L~~eAL~i~eqV~G~~HpevA~~y~~LA~vy~~~Gd~~eA 189 (222)
..++.+++.++..+.+|++.-|.+|...++. ..|.|+ .+-...|.+|..+|.-.+.
T Consensus 68 GG~d~vl~~A~~~~~~gd~~wA~~L~d~l~~-----adp~n~---~ar~l~A~al~~lg~~~~~ 123 (141)
T PF14863_consen 68 GGADKVLERAQAALAAGDYQWAAELLDHLVF-----ADPDNE---EARQLKADALEQLGYQSEN 123 (141)
T ss_dssp TCHHHHHHHHHHHHHCT-HHHHHHHHHHHHH-----H-TT-H---HHHHHHHHHHHHHHHH-SS
T ss_pred CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHH-----cCCCcH---HHHHHHHHHHHHHHHhccC
Confidence 4677899999999999999999999988876 345555 4556677777777655443
No 261
>KOG1125 consensus TPR repeat-containing protein [General function prediction only]
Probab=41.45 E-value=37 Score=33.85 Aligned_cols=58 Identities=14% Similarity=0.096 Sum_probs=41.2
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHHHHHHHHhCCCChHHH--HHHHHHHHHHHHcCChhhH
Q 027539 132 LESSKIALDKGKLEDAVNYGTKALARMIAVCGPYHRTTA--STYSLLAVVLYHTGDFNQV 189 (222)
Q Consensus 132 le~g~~~l~qG~~e~A~~L~~eAL~i~eqV~G~~HpevA--~~y~~LA~vy~~~Gd~~eA 189 (222)
++.|-.+++.|.|+||.+.|.+||++...-++..--..+ +....|=.++.-+|+.+-+
T Consensus 502 yNlgIS~mNlG~ykEA~~hlL~AL~mq~ks~~~~~~~~~se~iw~tLR~als~~~~~D~l 561 (579)
T KOG1125|consen 502 YNLGISCMNLGAYKEAVKHLLEALSMQRKSRNHNKAPMASENIWQTLRLALSAMNRSDLL 561 (579)
T ss_pred hhhhhhhhhhhhHHHHHHHHHHHHHhhhcccccccCCcchHHHHHHHHHHHHHcCCchHH
Confidence 344889999999999999999999999986655444322 4444444666666666533
No 262
>PRK09591 celC cellobiose phosphotransferase system IIA component; Reviewed
Probab=40.92 E-value=79 Score=24.44 Aligned_cols=37 Identities=16% Similarity=0.217 Sum_probs=30.5
Q ss_pred CchhHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHH
Q 027539 124 TSADGRTLLESSKIALDKGKLEDAVNYGTKALARMIA 160 (222)
Q Consensus 124 ~s~~a~~lle~g~~~l~qG~~e~A~~L~~eAL~i~eq 160 (222)
.+.+|+...-.|--...+|++++|.+++.+|=..+.+
T Consensus 16 ~aG~Ars~~~eAl~~ak~gdf~~A~~~l~eA~~~l~~ 52 (104)
T PRK09591 16 HSGNARTEVHEAFAAMREGNFDLAEQKLNQSNEELLE 52 (104)
T ss_pred HHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHH
Confidence 4678888888888888999999999999888775443
No 263
>KOG3616 consensus Selective LIM binding factor [Transcription]
Probab=40.89 E-value=28 Score=36.46 Aligned_cols=72 Identities=24% Similarity=0.240 Sum_probs=49.9
Q ss_pred HHHHHhcCChHHHHHHHHH-------------------HHHHHHHHhCCCChHHHHHHHHHHHHHHHcCChhhHhhchHH
Q 027539 135 SKIALDKGKLEDAVNYGTK-------------------ALARMIAVCGPYHRTTASTYSLLAVVLYHTGDFNQVRQSSVV 195 (222)
Q Consensus 135 g~~~l~qG~~e~A~~L~~e-------------------AL~i~eqV~G~~HpevA~~y~~LA~vy~~~Gd~~eAi~~~~~ 195 (222)
++.|.++|.++.|.+||.+ |..+-+.-.||. +|...|-.-|.=+...|+|.||. .
T Consensus 772 adhyan~~dfe~ae~lf~e~~~~~dai~my~k~~kw~da~kla~e~~~~e--~t~~~yiakaedldehgkf~eae----q 845 (1636)
T KOG3616|consen 772 ADHYANKGDFEIAEELFTEADLFKDAIDMYGKAGKWEDAFKLAEECHGPE--ATISLYIAKAEDLDEHGKFAEAE----Q 845 (1636)
T ss_pred HHHhccchhHHHHHHHHHhcchhHHHHHHHhccccHHHHHHHHHHhcCch--hHHHHHHHhHHhHHhhcchhhhh----h
Confidence 5555566666666655544 333445555553 56677778888899999999999 8
Q ss_pred hhhhhCCCCceEEEeee
Q 027539 196 FQCQLGDSKSSIIITSF 212 (222)
Q Consensus 196 ~~~~~~~~~~a~~i~e~ 212 (222)
+|.-.|...+|+.++.|
T Consensus 846 lyiti~~p~~aiqmydk 862 (1636)
T KOG3616|consen 846 LYITIGEPDKAIQMYDK 862 (1636)
T ss_pred eeEEccCchHHHHHHHh
Confidence 88777887777776654
No 264
>PF03461 TRCF: TRCF domain; InterPro: IPR005118 This domain is found in proteins necessary for strand-specific repair in DNA such as TRCF in Escherichia coli. A lesion in the template strand blocks the RNA polymerase complex (RNAP). The RNAP-DNA-RNA complex is specifically recognised by the transcription-repair-coupling factor (TRCF) which releases RNAP and the truncated transcript.; GO: 0003684 damaged DNA binding, 0004386 helicase activity, 0005524 ATP binding, 0006281 DNA repair; PDB: 2QSR_A 2EYQ_A.
Probab=40.74 E-value=19 Score=27.31 Aligned_cols=42 Identities=36% Similarity=0.485 Sum_probs=31.4
Q ss_pred hHHHHHHHhcccccccccccccchhhHHHHHHHHHHHceeeec
Q 027539 53 RLQWLRTFLGRRFGWSLKDEFQHLRKISILRGLCHKVGLELVP 95 (222)
Q Consensus 53 ~~~~i~~~v~~rfry~L~~~~~~~~k~~lLR~ic~K~GIQl~~ 95 (222)
-...+.+|+..||+- +|.+-..+=.+..||-+|.+.||.-..
T Consensus 34 el~~l~~El~DRFG~-~P~ev~~L~~~~~lk~~a~~~gi~~i~ 75 (101)
T PF03461_consen 34 ELEDLREELIDRFGP-LPEEVENLLELARLKILARKLGIESIK 75 (101)
T ss_dssp HHHHHHHHHHHHH-S---HHHHHHHHHHHHHHHHHHCTECEEE
T ss_pred HHHHHHHHHHHHcCC-CcHHHHHHHHHHHHHHHHHHCCCcEEE
Confidence 344688899999994 566666788889999999999997654
No 265
>PF07219 HemY_N: HemY protein N-terminus; InterPro: IPR010817 This entry represents the N terminus (approximately 150 residues) of bacterial HemY porphyrin biosynthesis proteins. These are membrane protein involved in a late step of protoheme IX synthesis [].
Probab=40.28 E-value=1.3e+02 Score=22.79 Aligned_cols=52 Identities=25% Similarity=0.213 Sum_probs=37.9
Q ss_pred hhHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHcCC
Q 027539 126 ADGRTLLESSKIALDKGKLEDAVNYGTKALARMIAVCGPYHRTTASTYSLLAVVLYHTGD 185 (222)
Q Consensus 126 ~~a~~lle~g~~~l~qG~~e~A~~L~~eAL~i~eqV~G~~HpevA~~y~~LA~vy~~~Gd 185 (222)
--+++.++.|-..+..|+++.|.....++-.. ...| .-.|..-|+.-..+||
T Consensus 57 ~ka~~al~~Gl~al~~G~~~~A~k~~~~a~~~------~~~~--~l~~L~AA~AA~~~gd 108 (108)
T PF07219_consen 57 RKAQRALSRGLIALAEGDWQRAEKLLAKAAKL------SDNP--LLNYLLAARAAQAQGD 108 (108)
T ss_pred HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc------CCCH--HHHHHHHHHHHHHcCC
Confidence 45778999999999999999999999988443 2333 3344555666666665
No 266
>KOG4642 consensus Chaperone-dependent E3 ubiquitin protein ligase (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]
Probab=40.24 E-value=26 Score=31.74 Aligned_cols=59 Identities=20% Similarity=0.261 Sum_probs=49.5
Q ss_pred CchhHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHcCChhhHh
Q 027539 124 TSADGRTLLESSKIALDKGKLEDAVNYGTKALARMIAVCGPYHRTTASTYSLLAVVLYHTGDFNQVR 190 (222)
Q Consensus 124 ~s~~a~~lle~g~~~l~qG~~e~A~~L~~eAL~i~eqV~G~~HpevA~~y~~LA~vy~~~Gd~~eAi 190 (222)
.|..+.++=|.|+-+....+|..|+.-|.+|+. +.|.+|.-|.|=|..|.++.+++.+.
T Consensus 6 ~s~~a~qlkE~gnk~f~~k~y~~ai~~y~raI~--------~nP~~~~Y~tnralchlk~~~~~~v~ 64 (284)
T KOG4642|consen 6 MSESAEQLKEQGNKCFIPKRYDDAIDCYSRAIC--------INPTVASYYTNRALCHLKLKHWEPVE 64 (284)
T ss_pred cchHHHHHHhccccccchhhhchHHHHHHHHHh--------cCCCcchhhhhHHHHHHHhhhhhhhh
Confidence 467788999999999988899999999999996 47888888888888888877766554
No 267
>PF10952 DUF2753: Protein of unknown function (DUF2753); InterPro: IPR020206 This entry represents a group of uncharacterised proteins.
Probab=40.05 E-value=1.5e+02 Score=24.22 Aligned_cols=56 Identities=14% Similarity=-0.009 Sum_probs=44.1
Q ss_pred HHHHHHhcCChHHHHHHHHHHHHHHHHHhCCCCh--------HHHHHHHHHHHHHHHcCChhhHh
Q 027539 134 SSKIALDKGKLEDAVNYGTKALARMIAVCGPYHR--------TTASTYSLLAVVLYHTGDFNQVR 190 (222)
Q Consensus 134 ~g~~~l~qG~~e~A~~L~~eAL~i~eqV~G~~Hp--------evA~~y~~LA~vy~~~Gd~~eAi 190 (222)
.|....++|..-.++-.|++|+++-+++--...- .|+.| .|||..+..+||.+=.+
T Consensus 7 lAd~a~~~~~~l~si~hYQqAls~se~~~~~~~~el~dll~i~VisC-HNLA~FWR~~gd~~yEL 70 (140)
T PF10952_consen 7 LADQAFKEADPLRSILHYQQALSLSEEIDESNEIELEDLLTISVISC-HNLADFWRSQGDSDYEL 70 (140)
T ss_pred HHHHHhhcccHHHHHHHHHHHHHHHHHhcccccccHHHHHHHHHHHH-hhHHHHHHHcCChHHHH
Confidence 4677788999999999999999999998322222 34444 56999999999987766
No 268
>KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms]
Probab=39.88 E-value=40 Score=32.24 Aligned_cols=57 Identities=21% Similarity=0.197 Sum_probs=38.6
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHcCChhhHh
Q 027539 129 RTLLESSKIALDKGKLEDAVNYGTKALARMIAVCGPYHRTTASTYSLLAVVLYHTGDFNQVR 190 (222)
Q Consensus 129 ~~lle~g~~~l~qG~~e~A~~L~~eAL~i~eqV~G~~HpevA~~y~~LA~vy~~~Gd~~eAi 190 (222)
-.-.+.|.+++.+|++++|..-|.+.|. ..|..-.+-..++.|+.+--+.....++.
T Consensus 107 ~ARiQRg~vllK~Gele~A~~DF~~vl~-----~~~s~~~~~eaqskl~~~~e~~~l~~ql~ 163 (504)
T KOG0624|consen 107 AARIQRGVVLLKQGELEQAEADFDQVLQ-----HEPSNGLVLEAQSKLALIQEHWVLVQQLK 163 (504)
T ss_pred HHHHHhchhhhhcccHHHHHHHHHHHHh-----cCCCcchhHHHHHHHHhHHHHHHHHHHHH
Confidence 3446789999999999999888887765 23545567777777776544443333333
No 269
>PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome. This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome.
Probab=39.85 E-value=22 Score=29.68 Aligned_cols=42 Identities=12% Similarity=-0.062 Sum_probs=31.4
Q ss_pred HHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHcCChhhHhhchHHhh
Q 027539 150 YGTKALARMIAVCGPYHRTTASTYSLLAVVLYHTGDFNQVRQSSVVFQ 197 (222)
Q Consensus 150 L~~eAL~i~eqV~G~~HpevA~~y~~LA~vy~~~Gd~~eAi~~~~~~~ 197 (222)
-+..-|.-++.= ..--++..++..+|.-|+..||+++|+ ..+
T Consensus 18 ~Le~elk~~~~n--~~kesir~~~~~l~~~~~~~Gd~~~A~----k~y 59 (177)
T PF10602_consen 18 KLEAELKDAKSN--LGKESIRMALEDLADHYCKIGDLEEAL----KAY 59 (177)
T ss_pred HHHHHHHHHHhc--cchHHHHHHHHHHHHHHHHhhhHHHHH----HHH
Confidence 334444444433 344689999999999999999999999 666
No 270
>KOG4056 consensus Translocase of outer mitochondrial membrane complex, subunit TOM20 [Intracellular trafficking, secretion, and vesicular transport]
Probab=39.55 E-value=33 Score=28.19 Aligned_cols=44 Identities=11% Similarity=0.019 Sum_probs=32.1
Q ss_pred cccccccccCchhHHHHHHHHHHHHhcCChHHHHHHHHHHHHHH
Q 027539 115 VPVCKHVGCTSADGRTLLESSKIALDKGKLEDAVNYGTKALARM 158 (222)
Q Consensus 115 ~PvVK~~~p~s~~a~~lle~g~~~l~qG~~e~A~~L~~eAL~i~ 158 (222)
.|+.++..-.-..-.+-.+.|..++.+|+.++|.+-+..|+.++
T Consensus 68 ~pd~~d~~~~E~~Fmqqv~lGE~L~~qg~~e~ga~h~~nAi~vc 111 (143)
T KOG4056|consen 68 IPDPSDAEEVEKFFMQQVQLGEELLAQGNEEEGAEHLANAIVVC 111 (143)
T ss_pred CCCCCCHHHHHHHHHHHHHhHHHHHHccCHHHHHHHHHHHHhhc
Confidence 34444444444444566788999999999999999999888754
No 271
>cd00215 PTS_IIA_lac PTS_IIA, PTS system, lactose/cellobiose specific IIA subunit. The bacterial phosphoenolpyruvate: sugar phosphotransferase system (PTS) is a multi-protein system involved in the regulation of a variety of metabolic and transcriptional processes. This family is one of four structurally and functionally distinct group IIA PTS system cytoplasmic enzymes, necessary for the uptake of carbohydrates across the cytoplasmic membrane and their phosphorylation. This family of proteins normally function as a homotrimer, stabilized by a centrally located metal ion. Separation into subunits is thought to occur after phosphorylation.
Probab=38.96 E-value=90 Score=23.77 Aligned_cols=37 Identities=14% Similarity=0.118 Sum_probs=29.9
Q ss_pred CchhHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHH
Q 027539 124 TSADGRTLLESSKIALDKGKLEDAVNYGTKALARMIA 160 (222)
Q Consensus 124 ~s~~a~~lle~g~~~l~qG~~e~A~~L~~eAL~i~eq 160 (222)
.+.+|+...-.|--...+|++++|.+++.+|=.-+..
T Consensus 11 ~aG~Ars~~~eAl~~a~~g~fe~A~~~l~ea~~~l~~ 47 (97)
T cd00215 11 HAGNARSKALEALKAAKEGDFAEAEELLEEANDSLNE 47 (97)
T ss_pred HHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHH
Confidence 4678888888888888999999999998888765543
No 272
>CHL00102 rps20 ribosomal protein S20
Probab=37.52 E-value=1.5e+02 Score=22.52 Aligned_cols=31 Identities=13% Similarity=0.220 Sum_probs=26.9
Q ss_pred cCChHHHHHHHHHHHHHHHHH--hCCCChHHHH
Q 027539 141 KGKLEDAVNYGTKALARMIAV--CGPYHRTTAS 171 (222)
Q Consensus 141 qG~~e~A~~L~~eAL~i~eqV--~G~~HpevA~ 171 (222)
.|+.++|.++|.++.+..-+. -|.+|+-.|.
T Consensus 48 ~~d~~~a~~~l~~a~s~iDkaa~KGviHkN~Aa 80 (93)
T CHL00102 48 SNNKKKVQETLSSVYSKIDKAVKKGVFHKNTAA 80 (93)
T ss_pred cccHHHHHHHHHHHHHHHHHHHHcCCcchhHHH
Confidence 389999999999999988764 4999999876
No 273
>TIGR00823 EIIA-LAC phosphotransferase system enzyme II, lactose-specific, factor III. operon. While the Lac permeases consist of two polypeptide chains (IIA and IICB), the Chb permease of E. coli consists of three (IIA, IIB and IIC). In B. subtilis, a PTS permease similar to the Chb permease of E. coli is believed to transport lichenan (a b-1,3;1,4 glucan) degradation products, oligosaccharides of 2-4 glucose units. This model is specific for the IIA subunit of the Lac PTS family.
Probab=37.31 E-value=1e+02 Score=23.61 Aligned_cols=37 Identities=16% Similarity=0.059 Sum_probs=30.4
Q ss_pred CchhHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHH
Q 027539 124 TSADGRTLLESSKIALDKGKLEDAVNYGTKALARMIA 160 (222)
Q Consensus 124 ~s~~a~~lle~g~~~l~qG~~e~A~~L~~eAL~i~eq 160 (222)
.+.+|+...-.|--...+|++++|.+++.+|=.-+..
T Consensus 13 ~aG~Ars~~~eAl~~a~~gdfe~A~~~l~eA~~~l~~ 49 (99)
T TIGR00823 13 YAGDARSKALEALKAAKAGDFAKARALVEQAGMCLNE 49 (99)
T ss_pred HHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHH
Confidence 4678888888888889999999999998888775544
No 274
>KOG2880 consensus SMAD6 interacting protein AMSH, contains JAB/MPN/Mov34 domain [Signal transduction mechanisms]
Probab=36.47 E-value=56 Score=31.04 Aligned_cols=45 Identities=24% Similarity=0.395 Sum_probs=38.8
Q ss_pred hhHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHhCCCChHHHH
Q 027539 126 ADGRTLLESSKIALDKGKLEDAVNYGTKALARMIAVCGPYHRTTAS 171 (222)
Q Consensus 126 ~~a~~lle~g~~~l~qG~~e~A~~L~~eAL~i~eqV~G~~HpevA~ 171 (222)
-.+.+++-+|.+|+.+|+++.|.-||.+=.+++..-+ |-|||.+.
T Consensus 33 Rsg~ei~rmA~VY~~EgN~enafvLy~ry~tLfiEki-pkHrDy~s 77 (424)
T KOG2880|consen 33 RSGTEILRMANVYLEEGNVENAFVLYLRYITLFIEKI-PKHRDYRS 77 (424)
T ss_pred hhhHHHHHHHHHHHhcCCcchhhhHHHHHHHHHHHhc-ccCcchhh
Confidence 3467889999999999999999999999999998744 77888873
No 275
>KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton]
Probab=36.26 E-value=69 Score=33.72 Aligned_cols=62 Identities=16% Similarity=0.146 Sum_probs=43.5
Q ss_pred ccCchhHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHcCChhhHhhchHHhh
Q 027539 122 GCTSADGRTLLESSKIALDKGKLEDAVNYGTKALARMIAVCGPYHRTTASTYSLLAVVLYHTGDFNQVRQSSVVFQ 197 (222)
Q Consensus 122 ~p~s~~a~~lle~g~~~l~qG~~e~A~~L~~eAL~i~eqV~G~~HpevA~~y~~LA~vy~~~Gd~~eAi~~~~~~~ 197 (222)
+|.+.-|.-+ .|-+....|+.++|+ .++|.++|+--.| -..+..|..+|..+|.+++|+ .+|
T Consensus 39 ~Pn~~~a~vL--kaLsl~r~gk~~ea~-------~~Le~~~~~~~~D-~~tLq~l~~~y~d~~~~d~~~----~~Y 100 (932)
T KOG2053|consen 39 HPNALYAKVL--KALSLFRLGKGDEAL-------KLLEALYGLKGTD-DLTLQFLQNVYRDLGKLDEAV----HLY 100 (932)
T ss_pred CCCcHHHHHH--HHHHHHHhcCchhHH-------HHHhhhccCCCCc-hHHHHHHHHHHHHHhhhhHHH----HHH
Confidence 3455555444 477888899888666 4445556544333 356888999999999999999 666
No 276
>PRK10454 PTS system N,N'-diacetylchitobiose-specific transporter subunit IIA; Provisional
Probab=36.05 E-value=1e+02 Score=24.35 Aligned_cols=37 Identities=14% Similarity=0.129 Sum_probs=30.3
Q ss_pred CchhHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHH
Q 027539 124 TSADGRTLLESSKIALDKGKLEDAVNYGTKALARMIA 160 (222)
Q Consensus 124 ~s~~a~~lle~g~~~l~qG~~e~A~~L~~eAL~i~eq 160 (222)
.+.+|+...-.|--...+|++++|.+++.+|-.-+.+
T Consensus 27 ~aG~ArS~~~eAl~~Ak~gdfe~A~~~l~eA~e~l~~ 63 (115)
T PRK10454 27 NSGQARSLAYAALKQAKQGDFAAAKAMMDQSRMALNE 63 (115)
T ss_pred HHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHH
Confidence 4678888888888888999999999998888775543
No 277
>KOG0551 consensus Hsp90 co-chaperone CNS1 (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]
Probab=34.88 E-value=1e+02 Score=29.15 Aligned_cols=59 Identities=17% Similarity=0.172 Sum_probs=49.5
Q ss_pred hHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHhCCCChH-HHHHHHHHHHHHHHcCChhhHh
Q 027539 127 DGRTLLESSKIALDKGKLEDAVNYGTKALARMIAVCGPYHRT-TASTYSLLAVVLYHTGDFNQVR 190 (222)
Q Consensus 127 ~a~~lle~g~~~l~qG~~e~A~~L~~eAL~i~eqV~G~~Hpe-vA~~y~~LA~vy~~~Gd~~eAi 190 (222)
.|.+.=|.|.-+....+|..|.++|+++|..- .-.|+ -|.+|+|=|...+.+|.|-.|+
T Consensus 80 ~Aen~KeeGN~~fK~Kryk~A~~~Yt~Glk~k-----c~D~dlnavLY~NRAAa~~~l~NyRs~l 139 (390)
T KOG0551|consen 80 QAENYKEEGNEYFKEKRYKDAVESYTEGLKKK-----CADPDLNAVLYTNRAAAQLYLGNYRSAL 139 (390)
T ss_pred HHHHHHHHhHHHHHhhhHHHHHHHHHHHHhhc-----CCCccHHHHHHhhHHHHHHHHHHHHHHH
Confidence 78899999999999999999999999998742 22344 3778999999999999988887
No 278
>PF14346 DUF4398: Domain of unknown function (DUF4398)
Probab=34.87 E-value=1.2e+02 Score=22.70 Aligned_cols=37 Identities=30% Similarity=0.317 Sum_probs=31.4
Q ss_pred CchhHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHH
Q 027539 124 TSADGRTLLESSKIALDKGKLEDAVNYGTKALARMIA 160 (222)
Q Consensus 124 ~s~~a~~lle~g~~~l~qG~~e~A~~L~~eAL~i~eq 160 (222)
.-..|++.|+.|+..+..|++++|..+..+|...-+.
T Consensus 41 el~~A~~~L~~A~~a~~~~~y~~A~~~A~~A~~~A~~ 77 (103)
T PF14346_consen 41 ELKEAREKLQRAKAALDDGDYERARRLAEQAQADAEL 77 (103)
T ss_pred HHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHH
Confidence 4478899999999999999999999999988776443
No 279
>KOG1129 consensus TPR repeat-containing protein [General function prediction only]
Probab=34.85 E-value=40 Score=32.03 Aligned_cols=61 Identities=11% Similarity=-0.085 Sum_probs=35.7
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHH---------HHHHHhC-C---------------CChHHHHHHHHHHHHHHHcCChh
Q 027539 133 ESSKIALDKGKLEDAVNYGTKALA---------RMIAVCG-P---------------YHRTTASTYSLLAVVLYHTGDFN 187 (222)
Q Consensus 133 e~g~~~l~qG~~e~A~~L~~eAL~---------i~eqV~G-~---------------~HpevA~~y~~LA~vy~~~Gd~~ 187 (222)
+.|+.++.-|.+.+|...++.+|. ++-+||- . .-|.--+.+.-.|+||..+|.++
T Consensus 228 Q~gkCylrLgm~r~AekqlqssL~q~~~~dTfllLskvY~ridQP~~AL~~~~~gld~fP~~VT~l~g~ARi~eam~~~~ 307 (478)
T KOG1129|consen 228 QMGKCYLRLGMPRRAEKQLQSSLTQFPHPDTFLLLSKVYQRIDQPERALLVIGEGLDSFPFDVTYLLGQARIHEAMEQQE 307 (478)
T ss_pred HHHHHHHHhcChhhhHHHHHHHhhcCCchhHHHHHHHHHHHhccHHHHHHHHhhhhhcCCchhhhhhhhHHHHHHHHhHH
Confidence 346667777777777766666665 2223332 1 12333344555677777777777
Q ss_pred hHhhchHHhh
Q 027539 188 QVRQSSVVFQ 197 (222)
Q Consensus 188 eAi~~~~~~~ 197 (222)
+|+ ++|
T Consensus 308 ~a~----~lY 313 (478)
T KOG1129|consen 308 DAL----QLY 313 (478)
T ss_pred HHH----HHH
Confidence 777 666
No 280
>PF13041 PPR_2: PPR repeat family
Probab=34.38 E-value=24 Score=22.48 Aligned_cols=42 Identities=24% Similarity=0.309 Sum_probs=28.3
Q ss_pred HHHHHHHHHHHHcCChhhHhhchHHhhhhhCCCCceEEEeeeechhcc
Q 027539 171 STYSLLAVVLYHTGDFNQVRQSSVVFQCQLGDSKSSIIITSFCTEVLI 218 (222)
Q Consensus 171 ~~y~~LA~vy~~~Gd~~eAi~~~~~~~~~~~~~~~a~~i~e~~~~~~~ 218 (222)
.+|+.|=..|.+.|++++|...-.+.. ++-+.-.+.+-.+||
T Consensus 4 ~~yn~li~~~~~~~~~~~a~~l~~~M~------~~g~~P~~~Ty~~li 45 (50)
T PF13041_consen 4 VTYNTLISGYCKAGKFEEALKLFKEMK------KRGIKPDSYTYNILI 45 (50)
T ss_pred HHHHHHHHHHHHCcCHHHHHHHHHHHH------HcCCCCCHHHHHHHH
Confidence 468899999999999999995444444 444444444444433
No 281
>KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=32.46 E-value=90 Score=30.58 Aligned_cols=49 Identities=12% Similarity=0.093 Sum_probs=40.6
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHcCChhhHh
Q 027539 133 ESSKIALDKGKLEDAVNYGTKALARMIAVCGPYHRTTASTYSLLAVVLYHTGDFNQVR 190 (222)
Q Consensus 133 e~g~~~l~qG~~e~A~~L~~eAL~i~eqV~G~~HpevA~~y~~LA~vy~~~Gd~~eAi 190 (222)
-.|..+.-+|++++|+.|+.++|.++-.+ .-.+.||.+..-++++.+|.
T Consensus 443 ~~AEL~~~Eg~~~D~i~LLe~~L~~~~D~---------~LH~~Lgd~~~A~Ne~Q~am 491 (564)
T KOG1174|consen 443 LIAELCQVEGPTKDIIKLLEKHLIIFPDV---------NLHNHLGDIMRAQNEPQKAM 491 (564)
T ss_pred HHHHHHHhhCccchHHHHHHHHHhhcccc---------HHHHHHHHHHHHhhhHHHHH
Confidence 34677888999999999999999988653 34567888888999999998
No 282
>KOG2471 consensus TPR repeat-containing protein [General function prediction only]
Probab=32.39 E-value=61 Score=32.34 Aligned_cols=44 Identities=14% Similarity=0.060 Sum_probs=32.9
Q ss_pred ccccccccCchhHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHH
Q 027539 116 PVCKHVGCTSADGRTLLESSKIALDKGKLEDAVNYGTKALARMI 159 (222)
Q Consensus 116 PvVK~~~p~s~~a~~lle~g~~~l~qG~~e~A~~L~~eAL~i~e 159 (222)
|-.+-+.+.++-.--+++.|..+.-||.++.|-.++.+|.++..
T Consensus 607 ~q~~~~sv~~Ar~v~~~nLa~a~alq~~~dqAk~ll~~aatl~h 650 (696)
T KOG2471|consen 607 RQSVFLSVEEARGVLFANLAAALALQGHHDQAKSLLTHAATLLH 650 (696)
T ss_pred cccccCCHHHHhHHHHHHHHHHHHHhcccHHHHHHHHHHHHhhh
Confidence 33333444444455567789999999999999999999999865
No 283
>KOG3785 consensus Uncharacterized conserved protein [Function unknown]
Probab=32.05 E-value=1e+02 Score=29.69 Aligned_cols=53 Identities=19% Similarity=0.157 Sum_probs=40.3
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHcCChhhHh
Q 027539 131 LLESSKIALDKGKLEDAVNYGTKALARMIAVCGPYHRTTASTYSLLAVVLYHTGDFNQVR 190 (222)
Q Consensus 131 lle~g~~~l~qG~~e~A~~L~~eAL~i~eqV~G~~HpevA~~y~~LA~vy~~~Gd~~eAi 190 (222)
+++-||+.+.-|.+.+|.++| .+|.|+.-.+--.-.+.||+.|-+.|.+.-|-
T Consensus 396 n~N~AQAk~atgny~eaEelf-------~~is~~~ikn~~~Y~s~LArCyi~nkkP~lAW 448 (557)
T KOG3785|consen 396 NLNLAQAKLATGNYVEAEELF-------IRISGPEIKNKILYKSMLARCYIRNKKPQLAW 448 (557)
T ss_pred hhHHHHHHHHhcChHHHHHHH-------hhhcChhhhhhHHHHHHHHHHHHhcCCchHHH
Confidence 446689999999888887765 56778776666667777888888888776665
No 284
>cd02682 MIT_AAA_Arch MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in mostly archaebacterial AAA-ATPases. The molecular function of the MIT domain is unclear.
Probab=31.38 E-value=45 Score=24.41 Aligned_cols=26 Identities=19% Similarity=0.158 Sum_probs=22.6
Q ss_pred HHHHHHHHHHHHHHHcCChhhHhhchHHhh
Q 027539 168 TTASTYSLLAVVLYHTGDFNQVRQSSVVFQ 197 (222)
Q Consensus 168 evA~~y~~LA~vy~~~Gd~~eAi~~~~~~~ 197 (222)
+.|..|-..|.-+.+.|++.+|+ .+|
T Consensus 4 ~~A~~~a~~AVe~D~~gr~~eAi----~~Y 29 (75)
T cd02682 4 EMARKYAINAVKAEKEGNAEDAI----TNY 29 (75)
T ss_pred HHHHHHHHHHHHHHhcCCHHHHH----HHH
Confidence 46778888999999999999999 666
No 285
>KOG2072 consensus Translation initiation factor 3, subunit a (eIF-3a) [Translation, ribosomal structure and biogenesis]
Probab=31.29 E-value=83 Score=33.04 Aligned_cols=43 Identities=28% Similarity=0.386 Sum_probs=36.7
Q ss_pred hHHH--HHHHHHHHHHHHHHhC--------CCChHHHHHHHHHHHHHHHcCCh
Q 027539 144 LEDA--VNYGTKALARMIAVCG--------PYHRTTASTYSLLAVVLYHTGDF 186 (222)
Q Consensus 144 ~e~A--~~L~~eAL~i~eqV~G--------~~HpevA~~y~~LA~vy~~~Gd~ 186 (222)
++.| ++|.+||..-.|.|+| |.-...|+-|.+|+.|....|++
T Consensus 239 LdvAi~lELWQEAyrSiEDIhgLm~lSKrtPkp~~laNYY~KL~~VF~~sgn~ 291 (988)
T KOG2072|consen 239 LDVAIELELWQEAYRSIEDIHGLMKLSKRTPKPSTLANYYEKLAKVFWKSGNP 291 (988)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHHHhcCcH
Confidence 4444 5889999999999999 55567899999999999999985
No 286
>KOG4814 consensus Uncharacterized conserved protein [Function unknown]
Probab=30.68 E-value=64 Score=33.09 Aligned_cols=59 Identities=15% Similarity=0.178 Sum_probs=43.9
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHcCChhhHh
Q 027539 130 TLLESSKIALDKGKLEDAVNYGTKALARMIAVCGPYHRTTASTYSLLAVVLYHTGDFNQVR 190 (222)
Q Consensus 130 ~lle~g~~~l~qG~~e~A~~L~~eAL~i~eqV~G~~HpevA~~y~~LA~vy~~~Gd~~eAi 190 (222)
-+|++|.-+..-.+|..+.++|..++..+- ...+..+-|+..++|+..|..+...+.|.
T Consensus 356 iLWn~A~~~F~~~~Y~~s~~~y~~Sl~~i~--~D~~~~~FaK~qR~l~~CYL~L~QLD~A~ 414 (872)
T KOG4814|consen 356 LLWNTAKKLFKMEKYVVSIRFYKLSLKDII--SDNYSDRFAKIQRALQVCYLKLEQLDNAV 414 (872)
T ss_pred HHHHhhHHHHHHHHHHHHHHHHHHHHHhcc--chhhhhHHHHHHHHHHHHHhhHHHHHHHH
Confidence 479999888888889999999999887542 34445555777777777777776666666
No 287
>KOG4234 consensus TPR repeat-containing protein [General function prediction only]
Probab=30.23 E-value=1.1e+02 Score=27.26 Aligned_cols=52 Identities=13% Similarity=0.092 Sum_probs=46.1
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHcCChhhHh
Q 027539 131 LLESSKIALDKGKLEDAVNYGTKALARMIAVCGPYHRTTASTYSLLAVVLYHTGDFNQVR 190 (222)
Q Consensus 131 lle~g~~~l~qG~~e~A~~L~~eAL~i~eqV~G~~HpevA~~y~~LA~vy~~~Gd~~eAi 190 (222)
+.+.|...+.+++.+.|++-.++|+.+ .|..-.++-.-|-+|.++..|++|+
T Consensus 137 y~Nraaa~iKl~k~e~aI~dcsKaiel--------~pty~kAl~RRAeayek~ek~eeal 188 (271)
T KOG4234|consen 137 YSNRAAALIKLRKWESAIEDCSKAIEL--------NPTYEKALERRAEAYEKMEKYEEAL 188 (271)
T ss_pred HhhhHHHHHHhhhHHHHHHHHHhhHhc--------CchhHHHHHHHHHHHHhhhhHHHHH
Confidence 556788899999999999999999964 6777888888899999999999999
No 288
>PF05053 Menin: Menin; InterPro: IPR007747 MEN1, the gene responsible for multiple endocrine neoplasia type 1, is a tumour suppressor gene that encodes a protein called Menin which may be an atypical GTPase stimulated by nm23 [].; GO: 0005634 nucleus; PDB: 3RE2_A 3U84_B 3U86_A 3U88_B 3U85_A.
Probab=30.19 E-value=90 Score=31.38 Aligned_cols=42 Identities=12% Similarity=0.177 Sum_probs=34.5
Q ss_pred HHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHcCChhhHh
Q 027539 146 DAVNYGTKALARMIAVCGPYHRTTASTYSLLAVVLYHTGDFNQVR 190 (222)
Q Consensus 146 ~A~~L~~eAL~i~eqV~G~~HpevA~~y~~LA~vy~~~Gd~~eAi 190 (222)
.+++||+||+..-...|+..|- --|..+|.-||..++|.+|+
T Consensus 297 ~~~~l~~~AI~sa~~~Y~n~Hv---YPYty~gg~~yR~~~~~eA~ 338 (618)
T PF05053_consen 297 TPLELFNEAISSARTYYNNHHV---YPYTYLGGYYYRHKRYREAL 338 (618)
T ss_dssp -HHHHHHHHHHHHHHHCTT--S---HHHHHHHHHHHHTT-HHHHH
T ss_pred CHHHHHHHHHHHHHHHhcCCcc---ccceehhhHHHHHHHHHHHH
Confidence 5679999999999999998884 45888999999999999999
No 289
>PF14498 Glyco_hyd_65N_2: Glycosyl hydrolase family 65, N-terminal domain; PDB: 2EAE_A 2EAB_B 2EAC_A 2EAD_B 2RDY_A.
Probab=30.04 E-value=31 Score=29.74 Aligned_cols=36 Identities=19% Similarity=0.230 Sum_probs=27.4
Q ss_pred ccCchhHHHHHHHHHHHHhcCChHHHHHHHHHHHHH
Q 027539 122 GCTSADGRTLLESSKIALDKGKLEDAVNYGTKALAR 157 (222)
Q Consensus 122 ~p~s~~a~~lle~g~~~l~qG~~e~A~~L~~eAL~i 157 (222)
.....++.+.+...|..+.+|++++|.+|..+...-
T Consensus 48 ~~~~~~~~~~L~~iR~l~~~g~~~~A~~l~~~~~~~ 83 (236)
T PF14498_consen 48 DRTPPDAAEYLPEIRELLFEGDYEEAEELAEENFGG 83 (236)
T ss_dssp SSSSHHHHHHHHHHHHHHHTT-CCHHHHHHCCS-B-
T ss_pred cccCccHHHHHHHHHHHHHcCChhHHHHHHHHhccC
Confidence 344566899999999999999999999988765543
No 290
>PF01535 PPR: PPR repeat; InterPro: IPR002885 This entry represents the PPR repeat. Pentatricopeptide repeat (PPR) proteins are characterised by tandem repeats of a degenerate 35 amino acid motif []. Most of PPR proteins have roles in mitochondria or plastid []. PPR repeats were discovered while screening Arabidopsis proteins for those predicted to be targeted to mitochondria or chloroplast [, ]. Some of these proteins have been shown to play a role in post-transcriptional processes within organelles and they are thought to be sequence-specific RNA-binding proteins [, , ]. Plant genomes have between one hundred to five hundred PPR genes per genome whereas non-plant genomes encode two to six PPR proteins. Although no PPR structures are yet known, the motif is predicted to fold into a helix-turn-helix structure similar to those found in the tetratricopeptide repeat (TPR) family (see PDOC50005 from PROSITEDOC) []. The plant PPR protein family has been divided in two subfamilies on the basis of their motif content and organisation [, ]. Examples of PPR repeat-containing proteins include PET309 P32522 from SWISSPROT, which may be involved in RNA stabilisation [], and crp1, which is involved in RNA processing []. The repeat is associated with a predicted plant protein O49549 from SWISSPROT that has a domain organisation similar to the human BRCA1 protein.
Probab=30.00 E-value=56 Score=17.91 Aligned_cols=19 Identities=26% Similarity=0.396 Sum_probs=17.7
Q ss_pred HHHHHHHHHHHcCChhhHh
Q 027539 172 TYSLLAVVLYHTGDFNQVR 190 (222)
Q Consensus 172 ~y~~LA~vy~~~Gd~~eAi 190 (222)
+|+.|=..|.+.|++++|.
T Consensus 2 ~y~~li~~~~~~~~~~~a~ 20 (31)
T PF01535_consen 2 TYNSLISGYCKMGQFEEAL 20 (31)
T ss_pred cHHHHHHHHHccchHHHHH
Confidence 5889999999999999999
No 291
>PF13812 PPR_3: Pentatricopeptide repeat domain
Probab=30.00 E-value=66 Score=18.09 Aligned_cols=27 Identities=22% Similarity=0.146 Sum_probs=21.4
Q ss_pred HHHHHHHHHHHHcCChhhHhhchHHhh
Q 027539 171 STYSLLAVVLYHTGDFNQVRQSSVVFQ 197 (222)
Q Consensus 171 ~~y~~LA~vy~~~Gd~~eAi~~~~~~~ 197 (222)
.+|+.+-..+.+.|++++|...-....
T Consensus 2 ~ty~~ll~a~~~~g~~~~a~~~~~~M~ 28 (34)
T PF13812_consen 2 HTYNALLRACAKAGDPDAALQLFDEMK 28 (34)
T ss_pred cHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 478999999999999999994444433
No 292
>COG0457 NrfG FOG: TPR repeat [General function prediction only]
Probab=29.99 E-value=2.2e+02 Score=20.77 Aligned_cols=52 Identities=25% Similarity=0.285 Sum_probs=23.6
Q ss_pred HHhcCChHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHH-HHHHcCChhhHh
Q 027539 138 ALDKGKLEDAVNYGTKALARMIAVCGPYHRTTASTYSLLAV-VLYHTGDFNQVR 190 (222)
Q Consensus 138 ~l~qG~~e~A~~L~~eAL~i~eqV~G~~HpevA~~y~~LA~-vy~~~Gd~~eAi 190 (222)
+...|....+..-+.+++..+.+........ .......+. +++..|++++|.
T Consensus 98 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~a~ 150 (291)
T COG0457 98 LLNLGLLLEALGKYEEALELLEKALALDPDP-DLAEALLALGALYELGDYEEAL 150 (291)
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHcCCCCc-chHHHHHHHHHHHHcCCHHHHH
Confidence 3344444444444555555555554422222 111222222 666666666666
No 293
>KOG4507 consensus Uncharacterized conserved protein, contains TPR repeats [Function unknown]
Probab=29.82 E-value=53 Score=33.45 Aligned_cols=65 Identities=18% Similarity=0.182 Sum_probs=50.7
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHcCChhhHhhchHHhhhhhCCCCceEEEeee
Q 027539 133 ESSKIALDKGKLEDAVNYGTKALARMIAVCGPYHRTTASTYSLLAVVLYHTGDFNQVRQSSVVFQCQLGDSKSSIIITSF 212 (222)
Q Consensus 133 e~g~~~l~qG~~e~A~~L~~eAL~i~eqV~G~~HpevA~~y~~LA~vy~~~Gd~~eAi~~~~~~~~~~~~~~~a~~i~e~ 212 (222)
+.|++.+..|...+|..+++|+|+|. -.-| -....+++.|..+.+.+.|+ +.. +.|+..+-+
T Consensus 647 ~la~~~~~~~~~~da~~~l~q~l~~~--~sep------l~~~~~g~~~l~l~~i~~a~----~~~------~~a~~~~~~ 708 (886)
T KOG4507|consen 647 NLANLLIHYGLHLDATKLLLQALAIN--SSEP------LTFLSLGNAYLALKNISGAL----EAF------RQALKLTTK 708 (886)
T ss_pred HHHHHHHHhhhhccHHHHHHHHHhhc--ccCc------hHHHhcchhHHHHhhhHHHH----HHH------HHHHhcCCC
Confidence 55888999998999999999999987 1122 24556888899999999999 777 678777766
Q ss_pred ech
Q 027539 213 CTE 215 (222)
Q Consensus 213 ~~~ 215 (222)
|..
T Consensus 709 ~~~ 711 (886)
T KOG4507|consen 709 CPE 711 (886)
T ss_pred Chh
Confidence 654
No 294
>PF10345 Cohesin_load: Cohesin loading factor; InterPro: IPR019440 Cohesin loading factor is a conserved protein that has been characterised in fungi. It is associated with the cohesin complex and is required in G1 for cohesin binding to chromosomes, but is dispensable in G2 when cohesion has been established. It is often referred to as Ssl3 in Schizosaccharomyces pombe (Fission yeast), and Scc4 in Saccharomyces cerevisiae (Baker's yeast). It complexes with Mis4 [].
Probab=29.44 E-value=1.6e+02 Score=29.14 Aligned_cols=62 Identities=21% Similarity=0.159 Sum_probs=50.4
Q ss_pred hhHHHHHHHHHHHHhcC-ChHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHcCChhhHh
Q 027539 126 ADGRTLLESSKIALDKG-KLEDAVNYGTKALARMIAVCGPYHRTTASTYSLLAVVLYHTGDFNQVR 190 (222)
Q Consensus 126 ~~a~~lle~g~~~l~qG-~~e~A~~L~~eAL~i~eqV~G~~HpevA~~y~~LA~vy~~~Gd~~eAi 190 (222)
.+|+.-++-|++++.+- ++++|.+.+++++.+-++ ..+-..--.|...|+.+|++.|... |.
T Consensus 57 ~ea~~~l~la~iL~~eT~n~~~Ae~~L~k~~~l~~~--~~~~d~k~~~~~ll~~i~~~~~~~~-a~ 119 (608)
T PF10345_consen 57 QEARVRLRLASILLEETENLDLAETYLEKAILLCER--HRLTDLKFRCQFLLARIYFKTNPKA-AL 119 (608)
T ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccc--cchHHHHHHHHHHHHHHHHhcCHHH-HH
Confidence 57788888899988654 799999999999999988 4444445777788899999999887 66
No 295
>KOG2062 consensus 26S proteasome regulatory complex, subunit RPN2/PSMD1 [Posttranslational modification, protein turnover, chaperones]
Probab=29.11 E-value=70 Score=33.26 Aligned_cols=45 Identities=11% Similarity=0.129 Sum_probs=31.6
Q ss_pred HHHHHHHHHHHHHhCCCCh-HHHHHHHHHHHHHHHcCChhhHhhchHHhh
Q 027539 149 NYGTKALARMIAVCGPYHR-TTASTYSLLAVVLYHTGDFNQVRQSSVVFQ 197 (222)
Q Consensus 149 ~L~~eAL~i~eqV~G~~Hp-evA~~y~~LA~vy~~~Gd~~eAi~~~~~~~ 197 (222)
+-.++++...|+.|-..-+ +--.+-...+.|||.+|+|++|+ +|.
T Consensus 37 pEIsd~l~~IE~lyed~~F~er~~AaL~~SKVyy~Lgeye~Al----~yA 82 (929)
T KOG2062|consen 37 PEISDSLPKIESLYEDETFPERQLAALLASKVYYYLGEYEDAL----EYA 82 (929)
T ss_pred HHhhhhHHHHHHHhccCCCchhHHHHHHHHHHHHHHHHHHHHH----HHH
Confidence 4456677777777754333 33333356789999999999999 887
No 296
>COG1447 CelC Phosphotransferase system cellobiose-specific component IIA [Carbohydrate transport and metabolism]
Probab=28.71 E-value=1e+02 Score=24.15 Aligned_cols=34 Identities=18% Similarity=0.161 Sum_probs=27.0
Q ss_pred CchhHHHHHHHHHHHHhcCChHHHHHHHHHHHHH
Q 027539 124 TSADGRTLLESSKIALDKGKLEDAVNYGTKALAR 157 (222)
Q Consensus 124 ~s~~a~~lle~g~~~l~qG~~e~A~~L~~eAL~i 157 (222)
.+.+|+..+-.|-.+..+|++++|.+++.+|-.-
T Consensus 15 ~aG~ArS~~~eAl~~Ak~g~f~~A~~~i~eA~~~ 48 (105)
T COG1447 15 HAGNARSKAYEALKAAKEGDFEEAEELIQEANDA 48 (105)
T ss_pred HcccHhHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 4567777777777788899999999998887653
No 297
>PF02064 MAS20: MAS20 protein import receptor; InterPro: IPR002056 Virtually all mitochondrial precursors are imported via the same mechanism []: precursors first bind to receptors on the mitochondrial surface, then insert into the translocation channel in the outer membrane. Many outer-membrane proteins participate in the early stages of import, four of which (MAS20, MAS22, MAS37 and MAS70) are components of the receptor. MAS20, which forms a subcomplex with MAS22, seems to interact with most or all mitochondrial precursors, suggesting that the protein binds directly to mitochondrial targeting sequences. The MAS37 and MAS70 components also form a subcomplex, the two subcomplexes possibly binding via their trans- membrane (TM) regions - the TM region of MAS70 promotes oligomerisation of attatched protein domains and shares sequence similarity with the TM region of MAS20 []. MAS20 is also known as TOM20.; GO: 0006605 protein targeting, 0006886 intracellular protein transport, 0005742 mitochondrial outer membrane translocase complex; PDB: 3AX3_A 3AWR_B 2V1S_A 3AX5_C 3AX2_C 1OM2_A 2V1T_B.
Probab=28.04 E-value=74 Score=25.35 Aligned_cols=30 Identities=20% Similarity=0.143 Sum_probs=24.2
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHHHHH
Q 027539 129 RTLLESSKIALDKGKLEDAVNYGTKALARM 158 (222)
Q Consensus 129 ~~lle~g~~~l~qG~~e~A~~L~~eAL~i~ 158 (222)
.+-++.|..++.+|+.++|.+-|-.|+.++
T Consensus 64 l~qV~lGE~L~~~G~~~~aa~hf~nAl~V~ 93 (121)
T PF02064_consen 64 LQQVQLGEQLLAQGDYEEAAEHFYNALKVC 93 (121)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHTS
T ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHHHhC
Confidence 355678999999999999999998888754
No 298
>PF12652 CotJB: CotJB protein; InterPro: IPR024207 The cotJ operon proteins affect spore coat composition, and is controlled by sigma E. The genes, which include CotJB, are either required for the normal formation of the inner layers of the coat or are themselves structural components of the coat []. CotJB has been identified as a spore coat protein [].
Probab=27.99 E-value=1.4e+02 Score=21.99 Aligned_cols=37 Identities=5% Similarity=0.003 Sum_probs=26.0
Q ss_pred ccccCchhHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHhCCCChH
Q 027539 120 HVGCTSADGRTLLESSKIALDKGKLEDAVNYGTKALARMIAVCGPYHRT 168 (222)
Q Consensus 120 ~~~p~s~~a~~lle~g~~~l~qG~~e~A~~L~~eAL~i~eqV~G~~Hpe 168 (222)
+.+|....|-+. +++......++..-|++-|||+.-.
T Consensus 23 DTHP~d~~Al~~------------y~~~~~~~~~l~~~Ye~~yGPLt~~ 59 (78)
T PF12652_consen 23 DTHPDDQEALEY------------YNEYSKQRKQLKKEYEKRYGPLTNF 59 (78)
T ss_pred cCCCCcHHHHHH------------HHHHHHHHHHHHHHHHHHhCCCcCC
Confidence 455655555444 4566667778889999999998643
No 299
>COG2976 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=27.42 E-value=73 Score=27.82 Aligned_cols=50 Identities=20% Similarity=0.200 Sum_probs=35.5
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHcCChhhHh
Q 027539 132 LESSKIALDKGKLEDAVNYGTKALARMIAVCGPYHRTTASTYSLLAVVLYHTGDFNQVR 190 (222)
Q Consensus 132 le~g~~~l~qG~~e~A~~L~~eAL~i~eqV~G~~HpevA~~y~~LA~vy~~~Gd~~eAi 190 (222)
+..|++.+++|++++|+.++ ..+-|+ .-++..--.-+-++-..||..+|.
T Consensus 130 lRLArvq~q~~k~D~AL~~L-------~t~~~~--~w~~~~~elrGDill~kg~k~~Ar 179 (207)
T COG2976 130 LRLARVQLQQKKADAALKTL-------DTIKEE--SWAAIVAELRGDILLAKGDKQEAR 179 (207)
T ss_pred HHHHHHHHHhhhHHHHHHHH-------hccccc--cHHHHHHHHhhhHHHHcCchHHHH
Confidence 34499999999999665544 444332 234445556688999999999999
No 300
>PLN02789 farnesyltranstransferase
Probab=27.20 E-value=1.3e+02 Score=27.50 Aligned_cols=23 Identities=9% Similarity=0.144 Sum_probs=12.9
Q ss_pred HHHHHHhcC-ChHHHHHHHHHHHH
Q 027539 134 SSKIALDKG-KLEDAVNYGTKALA 156 (222)
Q Consensus 134 ~g~~~l~qG-~~e~A~~L~~eAL~ 156 (222)
.|.+....| .++++++++.+++.
T Consensus 77 R~~iL~~L~~~l~eeL~~~~~~i~ 100 (320)
T PLN02789 77 RRLCLEALDADLEEELDFAEDVAE 100 (320)
T ss_pred HHHHHHHcchhHHHHHHHHHHHHH
Confidence 345555555 35666666666554
No 301
>COG0268 RpsT Ribosomal protein S20 [Translation, ribosomal structure and biogenesis]
Probab=27.17 E-value=2.7e+02 Score=21.06 Aligned_cols=46 Identities=22% Similarity=0.251 Sum_probs=36.0
Q ss_pred hHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHh--CCCChHHHHH
Q 027539 127 DGRTLLESSKIALDKGKLEDAVNYGTKALARMIAVC--GPYHRTTAST 172 (222)
Q Consensus 127 ~a~~lle~g~~~l~qG~~e~A~~L~~eAL~i~eqV~--G~~HpevA~~ 172 (222)
-.+++.-.-...+..|+.+.|.++|.++-...-..- |.+|+-.|.-
T Consensus 27 ~~rT~iKk~~~ai~~gd~~~A~~~l~~a~~~idkaa~KGvihkN~AaR 74 (88)
T COG0268 27 ALRTAIKKVEAAIEAGDKEAAKAALKEAQKKIDKAASKGVIHKNKAAR 74 (88)
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHcCcccccHHHH
Confidence 345555556677889999999999999998776543 9999988763
No 302
>KOG3785 consensus Uncharacterized conserved protein [Function unknown]
Probab=27.09 E-value=1.7e+02 Score=28.37 Aligned_cols=56 Identities=14% Similarity=0.107 Sum_probs=41.3
Q ss_pred HHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHcCChhhHhhchHHhhhhhCCCCceE
Q 027539 151 GTKALARMIAVCGPYHRTTASTYSLLAVVLYHTGDFNQVRQSSVVFQCQLGDSKSSI 207 (222)
Q Consensus 151 ~~eAL~i~eqV~G~~HpevA~~y~~LA~vy~~~Gd~~eAi~~~~~~~~~~~~~~~a~ 207 (222)
|+||+.+|.+|. ...|+...---++|..||++.=|+-+-.....|-.|.|||.=|+
T Consensus 167 YQeAIdvYkrvL-~dn~ey~alNVy~ALCyyKlDYydvsqevl~vYL~q~pdStiA~ 222 (557)
T KOG3785|consen 167 YQEAIDVYKRVL-QDNPEYIALNVYMALCYYKLDYYDVSQEVLKVYLRQFPDSTIAK 222 (557)
T ss_pred HHHHHHHHHHHH-hcChhhhhhHHHHHHHHHhcchhhhHHHHHHHHHHhCCCcHHHH
Confidence 444455555554 35678777778899999999988888877788888999986553
No 303
>PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene. The molecular function of this protein is uncertain.
Probab=26.78 E-value=91 Score=30.91 Aligned_cols=66 Identities=18% Similarity=0.148 Sum_probs=0.0
Q ss_pred cccCchhHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHhCCC----ChHH-------------HHHHHHHHHHHHHc
Q 027539 121 VGCTSADGRTLLESSKIALDKGKLEDAVNYGTKALARMIAVCGPY----HRTT-------------ASTYSLLAVVLYHT 183 (222)
Q Consensus 121 ~~p~s~~a~~lle~g~~~l~qG~~e~A~~L~~eAL~i~eqV~G~~----Hpev-------------A~~y~~LA~vy~~~ 183 (222)
.+|.+++|.-++..-...- ..||.++|.+|+..=|..+|.. |..- ..+=..||+...++
T Consensus 197 i~pdCAdAYILLAEEeA~T----i~Eae~l~rqAvkAgE~~lg~s~~~~~~g~~~e~~~~Rdt~~~~y~KrRLAmCarkl 272 (539)
T PF04184_consen 197 INPDCADAYILLAEEEAST----IVEAEELLRQAVKAGEASLGKSQFLQHHGHFWEAWHRRDTNVLVYAKRRLAMCARKL 272 (539)
T ss_pred hhhhhhHHHhhcccccccC----HHHHHHHHHHHHHHHHHhhchhhhhhcccchhhhhhccccchhhhhHHHHHHHHHHh
Q ss_pred CChhhHh
Q 027539 184 GDFNQVR 190 (222)
Q Consensus 184 Gd~~eAi 190 (222)
|+..||+
T Consensus 273 Gr~~EAI 279 (539)
T PF04184_consen 273 GRLREAI 279 (539)
T ss_pred CChHHHH
No 304
>KOG2908 consensus 26S proteasome regulatory complex, subunit RPN9/PSMD13 [Posttranslational modification, protein turnover, chaperones]
Probab=26.74 E-value=2.4e+02 Score=26.78 Aligned_cols=65 Identities=18% Similarity=0.215 Sum_probs=49.0
Q ss_pred chhHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHH-cCChhhHh
Q 027539 125 SADGRTLLESSKIALDKGKLEDAVNYGTKALARMIAVCGPYHRTTASTYSLLAVVLYH-TGDFNQVR 190 (222)
Q Consensus 125 s~~a~~lle~g~~~l~qG~~e~A~~L~~eAL~i~eqV~G~~HpevA~~y~~LA~vy~~-~Gd~~eAi 190 (222)
-+..+-..+.|+.++..|+++++.+++.+.-......-| +-|.|-+.|+.++.-||+ -|+++.+-
T Consensus 112 ~av~~~~t~~~r~~L~i~DLk~~kk~ldd~~~~ld~~~~-v~~~Vh~~fY~lssqYyk~~~d~a~yY 177 (380)
T KOG2908|consen 112 DAVIYILTEIARLKLEINDLKEIKKLLDDLKSMLDSLDG-VTSNVHSSFYSLSSQYYKKIGDFASYY 177 (380)
T ss_pred hhHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhcccC-CChhhhhhHHHHHHHHHHHHHhHHHHH
Confidence 456666778899999999999999999998888877655 456566777777766664 56665543
No 305
>PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome. This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome.
Probab=26.67 E-value=2.6e+02 Score=23.14 Aligned_cols=61 Identities=18% Similarity=0.156 Sum_probs=44.8
Q ss_pred chhHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHcCChhhHh
Q 027539 125 SADGRTLLESSKIALDKGKLEDAVNYGTKALARMIAVCGPYHRTTASTYSLLAVVLYHTGDFNQVR 190 (222)
Q Consensus 125 s~~a~~lle~g~~~l~qG~~e~A~~L~~eAL~i~eqV~G~~HpevA~~y~~LA~vy~~~Gd~~eAi 190 (222)
...-+...+.|..+..-|+++.|++.|.++.. ...|+ ..+...+.++-+|....|++..+.
T Consensus 33 esir~~~~~l~~~~~~~Gd~~~A~k~y~~~~~---~~~~~--~~~id~~l~~irv~i~~~d~~~v~ 93 (177)
T PF10602_consen 33 ESIRMALEDLADHYCKIGDLEEALKAYSRARD---YCTSP--GHKIDMCLNVIRVAIFFGDWSHVE 93 (177)
T ss_pred HHHHHHHHHHHHHHHHhhhHHHHHHHHHHHhh---hcCCH--HHHHHHHHHHHHHHHHhCCHHHHH
Confidence 34455667789999999999999999998554 22233 335666777788888888888777
No 306
>KOG1127 consensus TPR repeat-containing protein [RNA processing and modification]
Probab=26.03 E-value=1.2e+02 Score=32.63 Aligned_cols=65 Identities=8% Similarity=-0.024 Sum_probs=52.5
Q ss_pred ccCchhHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHcCChhhHh
Q 027539 122 GCTSADGRTLLESSKIALDKGKLEDAVNYGTKALARMIAVCGPYHRTTASTYSLLAVVLYHTGDFNQVR 190 (222)
Q Consensus 122 ~p~s~~a~~lle~g~~~l~qG~~e~A~~L~~eAL~i~eqV~G~~HpevA~~y~~LA~vy~~~Gd~~eAi 190 (222)
+|...-|..+. |-+.-..+.+++|.+++++++.++++-+..---.|| -.++++++..+|.++.|.
T Consensus 963 ~p~~~fAy~~~--gstlEhL~ey~~a~ela~RliglLe~k~d~sqynva--k~~~gRL~lslgefe~A~ 1027 (1238)
T KOG1127|consen 963 HPQLCFAYAAN--GSTLEHLEEYRAALELATRLIGLLELKLDESQYNVA--KPDAGRLELSLGEFESAK 1027 (1238)
T ss_pred CcchhHHHHHH--HhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhh--hhhhhhhhhhhcchhhHh
Confidence 45555565554 777777888999999999999999998877766664 467899999999999887
No 307
>PRK10564 maltose regulon periplasmic protein; Provisional
Probab=25.70 E-value=1.5e+02 Score=27.38 Aligned_cols=39 Identities=21% Similarity=0.220 Sum_probs=31.7
Q ss_pred cccccCchhHHHHHHHH-HHHHhcCChHHHHHHHHHHHHH
Q 027539 119 KHVGCTSADGRTLLESS-KIALDKGKLEDAVNYGTKALAR 157 (222)
Q Consensus 119 K~~~p~s~~a~~lle~g-~~~l~qG~~e~A~~L~~eAL~i 157 (222)
|...|--+|.+..+..+ +..+.+|+.+.|+.|.+||-.+
T Consensus 247 ~~~~~v~~dTe~Yy~~aI~~AVk~gDi~KAL~LldEAe~L 286 (303)
T PRK10564 247 KKSEPMLNDTESYFNQAIKQAVKKGDVDKALKLLDEAERL 286 (303)
T ss_pred CCCCccCchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 44556667888888666 8899999999999999999653
No 308
>KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures]
Probab=25.18 E-value=47 Score=31.98 Aligned_cols=60 Identities=13% Similarity=0.065 Sum_probs=47.6
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHcCChhhHh
Q 027539 129 RTLLESSKIALDKGKLEDAVNYGTKALARMIAVCGPYHRTTASTYSLLAVVLYHTGDFNQVR 190 (222)
Q Consensus 129 ~~lle~g~~~l~qG~~e~A~~L~~eAL~i~eqV~G~~HpevA~~y~~LA~vy~~~Gd~~eAi 190 (222)
+..+..|+.++.-|.++.+++.|+.|+.+-..+-.++=. ...|-.|+.++-.+.|++.|.
T Consensus 123 q~~l~~~~Ahlgls~fq~~Lesfe~A~~~A~~~~D~~LE--lqvcv~Lgslf~~l~D~~Kal 182 (518)
T KOG1941|consen 123 QVSLSMGNAHLGLSVFQKALESFEKALRYAHNNDDAMLE--LQVCVSLGSLFAQLKDYEKAL 182 (518)
T ss_pred hhhhhHHHHhhhHHHHHHHHHHHHHHHHHhhccCCceee--eehhhhHHHHHHHHHhhhHHh
Confidence 444557899999999999999999999887776555422 345667999999999999999
No 309
>cd08977 SusD starch binding outer membrane protein SusD. SusD-like proteins from Bacteroidetes, members of the human distal gut microbiota, are part of the starch utilization system (Sus). Sus is one of the large clusters of glycosyl hydrolases, called polysaccharide utilization loci (PULs), which play an important role in polysaccharide recognition and uptake, and it is needed for growth on amylose, amylopectin, pullulan, and maltooligosaccharides. SusD, together with SusC, a predicted beta-barrel porin, forms the minimum outer-membrane starch-binding complex. The adult human distal gut microbiota is essential for digestion of a large variety of dietary polysaccharides, for which humans lack the necessary glycosyl hydrolases.
Probab=24.93 E-value=1.3e+02 Score=27.16 Aligned_cols=35 Identities=17% Similarity=0.099 Sum_probs=29.0
Q ss_pred CCCChHHHHHHHHHHHHHHHcC-----ChhhHhhchHHhh
Q 027539 163 GPYHRTTASTYSLLAVVLYHTG-----DFNQVRQSSVVFQ 197 (222)
Q Consensus 163 G~~HpevA~~y~~LA~vy~~~G-----d~~eAi~~~~~~~ 197 (222)
|..++....++..+|++|..+| ++++|+......-
T Consensus 169 ~~~r~~k~aA~al~ar~~L~~~~~~~~~~~~A~~~~~~vi 208 (359)
T cd08977 169 GDGRAWKKAARALLARVYLYLANYTAADYAEALTAAEKSF 208 (359)
T ss_pred CcchhhHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHH
Confidence 5678999999999999999999 8999985554443
No 310
>KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown]
Probab=24.45 E-value=76 Score=30.45 Aligned_cols=24 Identities=8% Similarity=0.250 Sum_probs=18.9
Q ss_pred HHHHHHHcCChhhHhhchHHhhhhhCCCCceEEE
Q 027539 176 LAVVLYHTGDFNQVRQSSVVFQCQLGDSKSSIII 209 (222)
Q Consensus 176 LA~vy~~~Gd~~eAi~~~~~~~~~~~~~~~a~~i 209 (222)
-+.-|+++|+|+||+ -+| -+++..
T Consensus 103 ~GN~yFKQgKy~EAI----DCY------s~~ia~ 126 (536)
T KOG4648|consen 103 RGNTYFKQGKYEEAI----DCY------STAIAV 126 (536)
T ss_pred hhhhhhhccchhHHH----HHh------hhhhcc
Confidence 367899999999999 777 555544
No 311
>PF10414 CysG_dimeriser: Sirohaem synthase dimerisation region; InterPro: IPR019478 Bacterial sulphur metabolism depends on the iron-containing porphinoid sirohaem. CysG is a multi-functional enzyme with S-adenosyl-L-methionine (SAM)-dependent bismethyltransferase, dehydrogenase and ferrochelatase activities. CysG synthesizes sirohaem from uroporphyrinogen III via reactions which encompass two branchpoint intermediates in tetrapyrrole biosynthesis, diverting flux first from protoporphyrin IX biosynthesis and then from cobalamin (vitamin B12) biosynthesis. CysG is a dimer. Its dimerisation region is 74 residues long, and acts to hold the two structurally similar protomers held together asymmetrically through a number of salt-bridges across complementary residues within the dimerisation region []. CysG dimerisation produces a series of active sites, accounting for CysG's multi-functionality, catalysing four diverse reactions: Two SAM-dependent methylations NAD+-dependent tetrapyrrole dehydrogenation Metal chelation ; GO: 0006779 porphyrin-containing compound biosynthetic process, 0055114 oxidation-reduction process; PDB: 1PJT_A 1PJS_A 1PJQ_A.
Probab=24.17 E-value=90 Score=21.12 Aligned_cols=41 Identities=22% Similarity=0.037 Sum_probs=29.9
Q ss_pred ccccccccCchhHHHHHHHHH-----HHHhcCChHHHHHHHHHHHH
Q 027539 116 PVCKHVGCTSADGRTLLESSK-----IALDKGKLEDAVNYGTKALA 156 (222)
Q Consensus 116 PvVK~~~p~s~~a~~lle~g~-----~~l~qG~~e~A~~L~~eAL~ 156 (222)
+-||..-|....=+.+||.-- ..+.+|+.++|...+.++|.
T Consensus 15 ~~Vk~~l~~~~~RR~FWe~~~~g~~~~~~~~g~~~~A~~~l~~~L~ 60 (60)
T PF10414_consen 15 ERVKQRLPDFAERRRFWERFFDGPFAELVLAGDEEEAEALLEQALD 60 (60)
T ss_dssp HHHHHH-SSHHHHHHHHHHHT-HHHHHHHHTT-HHHHHHHHHHHH-
T ss_pred HHHHHHCCCchHHHHHHHHHHcCHHHHHHHCCCHHHHHHHHHHhhC
Confidence 456666776677777887653 68889999999999999874
No 312
>PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases. Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding
Probab=24.11 E-value=4.5e+02 Score=22.90 Aligned_cols=72 Identities=14% Similarity=0.075 Sum_probs=50.4
Q ss_pred ccCchhHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHcCChhhHhhchHHhh
Q 027539 122 GCTSADGRTLLESSKIALDKGKLEDAVNYGTKALARMIAVCGPYHRTTASTYSLLAVVLYHTGDFNQVRQSSVVFQ 197 (222)
Q Consensus 122 ~p~s~~a~~lle~g~~~l~qG~~e~A~~L~~eAL~i~eqV~G~~HpevA~~y~~LA~vy~~~Gd~~eAi~~~~~~~ 197 (222)
......+...+..++.+..+|+++.|...+.++..... ..+.........-|.+....|+..+|+....++-
T Consensus 140 ~~~~~~~~~~l~~a~~aRk~g~~~~A~~~l~~~~~~~~----~~~~~~~~v~~e~akllw~~g~~~~Ai~~L~~~~ 211 (352)
T PF02259_consen 140 LLPEELAETWLKFAKLARKAGNFQLALSALNRLFQLNP----SSESLLPRVFLEYAKLLWAQGEQEEAIQKLRELL 211 (352)
T ss_pred cchhHHHHHHHHHHHHHHHCCCcHHHHHHHHHHhccCC----cccCCCcchHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 44556778889999999999999998888877554331 1122233444556888999999999995444333
No 313
>cd02679 MIT_spastin MIT: domain contained within Microtubule Interacting and Trafficking molecules. This MIT domain sub-family is found in the AAA protein spastin, a probable ATPase involved in the assembly or function of nuclear protein complexes; spastins might also be involved in microtubule dynamics. The molecular function of the MIT domain is unclear.
Probab=23.81 E-value=25 Score=25.92 Aligned_cols=34 Identities=12% Similarity=-0.120 Sum_probs=18.9
Q ss_pred HHHHHHHHHHHcCChhhHhhchHHhhhhhCCCCceEEEeeeech
Q 027539 172 TYSLLAVVLYHTGDFNQVRQSSVVFQCQLGDSKSSIIITSFCTE 215 (222)
Q Consensus 172 ~y~~LA~vy~~~Gd~~eAi~~~~~~~~~~~~~~~a~~i~e~~~~ 215 (222)
.+-+-|.-+-..|+.++|+ .+| ++++.+-++...
T Consensus 10 ~~I~kaL~~dE~g~~e~Al----~~Y------~~gi~~l~eg~a 43 (79)
T cd02679 10 EEISKALRADEWGDKEQAL----AHY------RKGLRELEEGIA 43 (79)
T ss_pred HHHHHHhhhhhcCCHHHHH----HHH------HHHHHHHHHHcC
Confidence 3333444455556777777 666 666655554443
No 314
>TIGR00756 PPR pentatricopeptide repeat domain (PPR motif). This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR.
Probab=23.80 E-value=1e+02 Score=16.93 Aligned_cols=19 Identities=26% Similarity=0.326 Sum_probs=17.3
Q ss_pred HHHHHHHHHHHcCChhhHh
Q 027539 172 TYSLLAVVLYHTGDFNQVR 190 (222)
Q Consensus 172 ~y~~LA~vy~~~Gd~~eAi 190 (222)
+|+.|=..|.+.|++++|.
T Consensus 2 ~~n~li~~~~~~~~~~~a~ 20 (35)
T TIGR00756 2 TYNTLIDGLCKAGRVEEAL 20 (35)
T ss_pred cHHHHHHHHHHCCCHHHHH
Confidence 5788888999999999999
No 315
>KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=23.64 E-value=2.3e+02 Score=26.00 Aligned_cols=31 Identities=19% Similarity=0.039 Sum_probs=18.3
Q ss_pred HHHHhcCChHHHHHHHHHHHHHHHHHhCCCC
Q 027539 136 KIALDKGKLEDAVNYGTKALARMIAVCGPYH 166 (222)
Q Consensus 136 ~~~l~qG~~e~A~~L~~eAL~i~eqV~G~~H 166 (222)
..+-+..+++.|-..+.+|..-||+=-.+.|
T Consensus 39 vafRnAk~feKakdcLlkA~~~yEnnrslfh 69 (308)
T KOG1585|consen 39 VAFRNAKKFEKAKDCLLKASKGYENNRSLFH 69 (308)
T ss_pred HHHHhhccHHHHHHHHHHHHHHHHhcccHHH
Confidence 3355555677776666666666665444444
No 316
>PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length. Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown.
Probab=23.62 E-value=1.8e+02 Score=28.71 Aligned_cols=58 Identities=12% Similarity=0.261 Sum_probs=46.0
Q ss_pred CchhHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHcCChhhHh
Q 027539 124 TSADGRTLLESSKIALDKGKLEDAVNYGTKALARMIAVCGPYHRTTASTYSLLAVVLYHTGDFNQVR 190 (222)
Q Consensus 124 ~s~~a~~lle~g~~~l~qG~~e~A~~L~~eAL~i~eqV~G~~HpevA~~y~~LA~vy~~~Gd~~eAi 190 (222)
+-.+..+.++.|.-...+|+|.+++-+-. -...+-| --.+|+.||.+.+...+|.||-
T Consensus 458 ~e~eian~LaDAEyLysqgey~kc~~ys~--------WL~~iaP-S~~~~RLlGl~l~e~k~Y~eA~ 515 (549)
T PF07079_consen 458 SEEEIANFLADAEYLYSQGEYHKCYLYSS--------WLTKIAP-SPQAYRLLGLCLMENKRYQEAW 515 (549)
T ss_pred cHHHHHHHHHHHHHHHhcccHHHHHHHHH--------HHHHhCC-cHHHHHHHHHHHHHHhhHHHHH
Confidence 44557788999999999999998874432 2224567 5578999999999999999999
No 317
>PF04212 MIT: MIT (microtubule interacting and transport) domain; InterPro: IPR007330 The MIT domain is found in vacuolar sorting proteins, spastin (probable ATPase involved in the assembly or function of nuclear protein complexes), and a sorting nexin, which may play a role in intracellular trafficking.; PDB: 2DL1_A 2JQK_A 1WR0_A 2CPT_A 2JQH_A 2V6Y_A 2JQ9_A 2K3W_A 1YXR_A 3EAB_E ....
Probab=23.52 E-value=80 Score=21.77 Aligned_cols=25 Identities=16% Similarity=0.113 Sum_probs=20.1
Q ss_pred HHHHHHHHHHHHHHcCChhhHhhchHHhh
Q 027539 169 TASTYSLLAVVLYHTGDFNQVRQSSVVFQ 197 (222)
Q Consensus 169 vA~~y~~LA~vy~~~Gd~~eAi~~~~~~~ 197 (222)
-|..+-.-|.-....|++++|+ .+|
T Consensus 4 ~A~~~~~~Av~~D~~g~~~~A~----~~Y 28 (69)
T PF04212_consen 4 KAIELIKKAVEADEAGNYEEAL----ELY 28 (69)
T ss_dssp HHHHHHHHHHHHHHTTSHHHHH----HHH
T ss_pred HHHHHHHHHHHHHHCCCHHHHH----HHH
Confidence 3556667788888999999999 777
No 318
>KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=23.47 E-value=1.8e+02 Score=26.80 Aligned_cols=51 Identities=14% Similarity=0.095 Sum_probs=38.1
Q ss_pred HHHHHHhcCChHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHcCChhhHh
Q 027539 134 SSKIALDKGKLEDAVNYGTKALARMIAVCGPYHRTTASTYSLLAVVLYHTGDFNQVR 190 (222)
Q Consensus 134 ~g~~~l~qG~~e~A~~L~~eAL~i~eqV~G~~HpevA~~y~~LA~vy~~~Gd~~eAi 190 (222)
++-+.+..| +.+ ++.|.-||+..++..-| |...++-+|.++-.+|++++|.
T Consensus 177 ~awv~la~g----gek-~qdAfyifeE~s~k~~~-T~~llnG~Av~~l~~~~~eeAe 227 (299)
T KOG3081|consen 177 QAWVKLATG----GEK-IQDAFYIFEELSEKTPP-TPLLLNGQAVCHLQLGRYEEAE 227 (299)
T ss_pred HHHHHHhcc----chh-hhhHHHHHHHHhcccCC-ChHHHccHHHHHHHhcCHHHHH
Confidence 344445555 222 78899999999986544 4456788999999999999999
No 319
>COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown]
Probab=22.21 E-value=2.4e+02 Score=25.00 Aligned_cols=58 Identities=24% Similarity=0.302 Sum_probs=43.2
Q ss_pred ccCchhHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHcCChhhHh
Q 027539 122 GCTSADGRTLLESSKIALDKGKLEDAVNYGTKALARMIAVCGPYHRTTASTYSLLAVVLYHTGDFNQVR 190 (222)
Q Consensus 122 ~p~s~~a~~lle~g~~~l~qG~~e~A~~L~~eAL~i~eqV~G~~HpevA~~y~~LA~vy~~~Gd~~eAi 190 (222)
..+++|..-++ |+++-.+|++++|..-|..|++-|-.- -|.|| -+..+-++|+.++|-
T Consensus 156 a~r~pd~~Ll~--aR~laa~g~~a~Aesafe~a~~~ypg~-------~ar~~--Y~e~La~qgr~~ea~ 213 (251)
T COG4700 156 AFRSPDGHLLF--ARTLAAQGKYADAESAFEVAISYYPGP-------QARIY--YAEMLAKQGRLREAN 213 (251)
T ss_pred ccCCCCchHHH--HHHHHhcCCchhHHHHHHHHHHhCCCH-------HHHHH--HHHHHHHhcchhHHH
Confidence 34677776676 999999999999999999998876421 23333 466777889888776
No 320
>PF05004 IFRD: Interferon-related developmental regulator (IFRD); InterPro: IPR007701 Interferon-related developmental regulator (IFRD1) is the human homologue of the Rattus norvegicus early response protein PC4 and its murine homologue TIS7 []. The exact function of IFRD1 is unknown but it has been shown that PC4 is necessary for muscle differentiation and that it might have a role in signal transduction. This entry also contains IFRD2 and its murine equivalent SKMc15, which are highly expressed soon after gastrulation and in the hepatic primordium, suggesting an involvement in early hematopoiesis [].
Probab=22.17 E-value=4e+02 Score=24.17 Aligned_cols=56 Identities=16% Similarity=0.131 Sum_probs=44.7
Q ss_pred HHHHHhcCChHHHHHHHHHHHHHHHHHh--CCCChHH-HHHHHHHHHHHHHcCChhhHh
Q 027539 135 SKIALDKGKLEDAVNYGTKALARMIAVC--GPYHRTT-ASTYSLLAVVLYHTGDFNQVR 190 (222)
Q Consensus 135 g~~~l~qG~~e~A~~L~~eAL~i~eqV~--G~~Hpev-A~~y~~LA~vy~~~Gd~~eAi 190 (222)
|-..++-|--+++.++|.+...++.++. |..++.+ +.|...||.+.+-.|.-.+.+
T Consensus 111 ~Ll~ltlg~g~~~~ei~~~~~~~L~~~l~d~s~~~~~R~~~~~aLai~~fv~~~d~~~~ 169 (309)
T PF05004_consen 111 ALLALTLGAGEDSEEIFEELKPVLKRILTDSSASPKARAACLEALAICTFVGGSDEEET 169 (309)
T ss_pred HHHhhhcCCCccHHHHHHHHHHHHHHHHhCCccchHHHHHHHHHHHHHHHhhcCChhHH
Confidence 5556776766788999999999999998 5667778 889999999988766655554
No 321
>PF05168 HEPN: HEPN domain; InterPro: IPR007842 The HEPN (higher eukaryotes and prokaryotes nucleotide-binding) domain is a region of 110 residues found in the C terminus of sacsin, a chaperonin implicated in an early-onset neurodegenerative disease in human, and in many bacterial and archeabacterial proteins. There are three classes of proteins with HEPN domain: Single-domain HEPN proteins found in many bacteria. Two-domain proteins with N-terminal nucleotidyltransferase (NT) and C- terminal HEPN domains. This N-terminal NT domain belongs to a large family of NTs, which includes several classes of enzymes that are responsible for some types of bacterial resistance to aminoglycosides. These enzymes deactivate various antibiotics by transferring a nucleotidyl group to the drug. A multidomain sacsin protein in genomes of fish and mammals. The HEPN domain is located at the C terminus of the protein, directly after the DnaJ domain (see PDOC00553 from PROSITEDOC). The crystal structure of the HEPN domain from the TM0613 protein of Thermotoga maritima indicates that it is structurally similar to the C-terminal all- alpha-helical domain of kanamycin nucleotidyltransferases (KNTases). It is composed of five alpha helices, three of which form an up- and-down helical bundle, with a pair of short helices on the side. The distant structural similarity suggests that the HEPN domain might be involved in nucleotide binding [].; PDB: 1O3U_A 1WOL_A 3O10_D 2HSB_A 1UFB_A.
Probab=21.67 E-value=2.9e+02 Score=19.93 Aligned_cols=31 Identities=23% Similarity=0.291 Sum_probs=24.0
Q ss_pred hHHHHHHHHHHHHhcCChHHHHHHHHHHHHH
Q 027539 127 DGRTLLESSKIALDKGKLEDAVNYGTKALAR 157 (222)
Q Consensus 127 ~a~~lle~g~~~l~qG~~e~A~~L~~eAL~i 157 (222)
.|++.++.|+..+..|.++.|.-...+|...
T Consensus 7 ~A~~~l~~A~~~~~~~~~~~a~~~a~~a~e~ 37 (118)
T PF05168_consen 7 KAEEDLKAAEILLEEGDYNWAVFHAYQAVEK 37 (118)
T ss_dssp HHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
Confidence 5888999999999999998777666666554
No 322
>PF12968 DUF3856: Domain of Unknown Function (DUF3856); InterPro: IPR024552 This domain of unknown function is found in a small group of tetratricopeptide-like proteins, which includes the uncharacterised protein Q8KAL8 from SWISSPROT. The structure of Q8KAL8 is known and belongs to the SCOP all alpha class, TPR-like superfamily, CT2138-like family.; PDB: 2HR2_D.
Probab=21.48 E-value=4.6e+02 Score=21.49 Aligned_cols=59 Identities=19% Similarity=0.185 Sum_probs=42.8
Q ss_pred HHHHHhcCChHHHHHHHHHHHHHHHHHhCCCChHHHHH----HHHHHHHHHHcCChhhHhhchHHhh
Q 027539 135 SKIALDKGKLEDAVNYGTKALARMIAVCGPYHRTTAST----YSLLAVVLYHTGDFNQVRQSSVVFQ 197 (222)
Q Consensus 135 g~~~l~qG~~e~A~~L~~eAL~i~eqV~G~~HpevA~~----y~~LA~vy~~~Gd~~eAi~~~~~~~ 197 (222)
+..+..-|+|++++.--..||..|.+ -|.+|.|..+- -.+=|..+..+|+.++|+ ++|+
T Consensus 62 s~A~~~Lgry~e~L~sA~~aL~YFNR-RGEL~qdeGklWIaaVfsra~Al~~~Gr~~eA~---~~fr 124 (144)
T PF12968_consen 62 SGALAGLGRYDECLQSADRALRYFNR-RGELHQDEGKLWIAAVFSRAVALEGLGRKEEAL---KEFR 124 (144)
T ss_dssp HHHHHHTT-HHHHHHHHHHHHHHHHH-H--TTSTHHHHHHHHHHHHHHHHHHTT-HHHHH---HHHH
T ss_pred HHHHHhhccHHHHHHHHHHHHHHHhh-ccccccccchhHHHHHHHHHHHHHhcCChHHHH---HHHH
Confidence 35566789999999999999987655 79999987653 345678888999999999 5555
No 323
>KOG3323 consensus D-Tyr-tRNA (Tyr) deacylase [Translation, ribosomal structure and biogenesis]
Probab=21.47 E-value=1.1e+02 Score=25.31 Aligned_cols=21 Identities=19% Similarity=0.121 Sum_probs=19.8
Q ss_pred hHHHHHHHHHHHHHHHHHhCC
Q 027539 144 LEDAVNYGTKALARMIAVCGP 164 (222)
Q Consensus 144 ~e~A~~L~~eAL~i~eqV~G~ 164 (222)
-++|.+||++-+..+++-||+
T Consensus 99 ~~ea~elY~qfl~~l~k~~~~ 119 (149)
T KOG3323|consen 99 GEEAKELYNQFLELLRKAYGA 119 (149)
T ss_pred chhhHHHHHHHHHHHHHHhCc
Confidence 688999999999999999998
No 324
>COG5116 RPN2 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones]
Probab=21.09 E-value=62 Score=32.93 Aligned_cols=25 Identities=28% Similarity=0.485 Sum_probs=20.7
Q ss_pred HHHHHHHHHcCChhhHhhchHHhhhhhCC
Q 027539 174 SLLAVVLYHTGDFNQVRQSSVVFQCQLGD 202 (222)
Q Consensus 174 ~~LA~vy~~~Gd~~eAi~~~~~~~~~~~~ 202 (222)
.-++.|||.+|+|++|+ +|.-.-||
T Consensus 63 L~~SKvYy~LgeY~~Ai----~yAL~agd 87 (926)
T COG5116 63 LCLSKVYYVLGEYQQAI----EYALRAGD 87 (926)
T ss_pred HHHHHHHHHHHhHHHHH----HHHHhcCC
Confidence 45789999999999999 88755555
No 325
>KOG1308 consensus Hsp70-interacting protein Hip/Transient component of progesterone receptor complexes and an Hsp70-binding protein [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=21.07 E-value=28 Score=32.83 Aligned_cols=49 Identities=22% Similarity=0.238 Sum_probs=39.6
Q ss_pred HHHHHHhcCChHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHcCChhhHh
Q 027539 134 SSKIALDKGKLEDAVNYGTKALARMIAVCGPYHRTTASTYSLLAVVLYHTGDFNQVR 190 (222)
Q Consensus 134 ~g~~~l~qG~~e~A~~L~~eAL~i~eqV~G~~HpevA~~y~~LA~vy~~~Gd~~eAi 190 (222)
++.-.+++|.+++|+++|..|+ +..|..|-.|-.=|.|+.++++...|+
T Consensus 120 ~A~eAln~G~~~~ai~~~t~ai--------~lnp~~a~l~~kr~sv~lkl~kp~~ai 168 (377)
T KOG1308|consen 120 QASEALNDGEFDTAIELFTSAI--------ELNPPLAILYAKRASVFLKLKKPNAAI 168 (377)
T ss_pred HHHHHhcCcchhhhhccccccc--------ccCCchhhhcccccceeeeccCCchhh
Confidence 3455788999999999999988 467888888888888888888877777
No 326
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=20.97 E-value=75 Score=30.58 Aligned_cols=63 Identities=29% Similarity=0.248 Sum_probs=47.4
Q ss_pred HHHHHHhcCChHHHHHHHHHH-----HHHHHHHhCCCChHHHHHHHHHHHHHHHcCChhhHhhchHHhhhhhCCCCc
Q 027539 134 SSKIALDKGKLEDAVNYGTKA-----LARMIAVCGPYHRTTASTYSLLAVVLYHTGDFNQVRQSSVVFQCQLGDSKS 205 (222)
Q Consensus 134 ~g~~~l~qG~~e~A~~L~~eA-----L~i~eqV~G~~HpevA~~y~~LA~vy~~~Gd~~eAi~~~~~~~~~~~~~~~ 205 (222)
.|...+.+|+++.|.+.|.++ |.++-.+.|.. ..+..||.+....|++.-|. ...-.+||.+.
T Consensus 353 Lg~~AL~~g~~~lAe~c~~k~~d~~~L~lLy~~~g~~-----~~L~kl~~~a~~~~~~n~af----~~~~~lgd~~~ 420 (443)
T PF04053_consen 353 LGDEALRQGNIELAEECYQKAKDFSGLLLLYSSTGDR-----EKLSKLAKIAEERGDINIAF----QAALLLGDVEE 420 (443)
T ss_dssp HHHHHHHTTBHHHHHHHHHHCT-HHHHHHHHHHCT-H-----HHHHHHHHHHHHTT-HHHHH----HHHHHHT-HHH
T ss_pred HHHHHHHcCCHHHHHHHHHhhcCccccHHHHHHhCCH-----HHHHHHHHHHHHccCHHHHH----HHHHHcCCHHH
Confidence 389999999999999999875 55666777763 77888888989999888877 55556777664
No 327
>KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=20.96 E-value=2.3e+02 Score=27.89 Aligned_cols=71 Identities=13% Similarity=0.029 Sum_probs=56.3
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHcCChhhHhhchHHhhhhhCCCCceEEE
Q 027539 131 LLESSKIALDKGKLEDAVNYGTKALARMIAVCGPYHRTTASTYSLLAVVLYHTGDFNQVRQSSVVFQCQLGDSKSSIII 209 (222)
Q Consensus 131 lle~g~~~l~qG~~e~A~~L~~eAL~i~eqV~G~~HpevA~~y~~LA~vy~~~Gd~~eAi~~~~~~~~~~~~~~~a~~i 209 (222)
++-.|+..++-|+.++|.--|.+|..+ -|.--.||.-|=-.|.-.|++-||....++-++.+|.+-+++.+
T Consensus 337 lilKG~lL~~~~R~~~A~IaFR~Aq~L--------ap~rL~~Y~GL~hsYLA~~~~kEA~~~An~~~~~~~~sA~~LtL 407 (564)
T KOG1174|consen 337 LILKGRLLIALERHTQAVIAFRTAQML--------APYRLEIYRGLFHSYLAQKRFKEANALANWTIRLFQNSARSLTL 407 (564)
T ss_pred HHhccHHHHhccchHHHHHHHHHHHhc--------chhhHHHHHHHHHHHHhhchHHHHHHHHHHHHHHhhcchhhhhh
Confidence 444677777788888887777777654 46667888888889999999999998888888888888877754
No 328
>PF10938 YfdX: YfdX protein; InterPro: IPR021236 YfdX is a protein found in Proteobacteria of unknown function. The protein coding for this gene is regulated by EvgA in Escherichia coli []. ; PDB: 3DZA_C.
Probab=20.95 E-value=1.6e+02 Score=24.09 Aligned_cols=62 Identities=18% Similarity=0.136 Sum_probs=43.8
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHhC-------------------------------CCChHHHHHHHHHH
Q 027539 129 RTLLESSKIALDKGKLEDAVNYGTKALARMIAVCG-------------------------------PYHRTTASTYSLLA 177 (222)
Q Consensus 129 ~~lle~g~~~l~qG~~e~A~~L~~eAL~i~eqV~G-------------------------------~~HpevA~~y~~LA 177 (222)
-+-...++..+.+|+.++|..++.+|...++.+-. +.-......-..-|
T Consensus 3 ~~~i~~Ar~aL~~g~~~~A~~~L~~A~~~l~~~~~~~p~~~~~~~~~~~~~~~~iPI~~~~~v~d~~~~~~~~~~ai~~a 82 (155)
T PF10938_consen 3 MRDIQKARLALFQGDTDEAKKLLEDAQGKLDAARADDPKLAKAEKILPPAKDDLIPIDAEVIVIDDYVPTPEKKAAIKTA 82 (155)
T ss_dssp HHHHHHHHHHHCTT-HHHHHHHHHHHHHHHTS-HHHHHCCB-TT-S--SSSS-EEEEEEEEEEE------HHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHhcChHhHhhhhccccCCCceEEEeeEEEEeeccCChHHHHHHHHHH
Confidence 34456799999999999999999999998873221 11244556666778
Q ss_pred HHHHHcCChhhHh
Q 027539 178 VVLYHTGDFNQVR 190 (222)
Q Consensus 178 ~vy~~~Gd~~eAi 190 (222)
.-.-+.|+..+|.
T Consensus 83 ~~~l~~g~~~~A~ 95 (155)
T PF10938_consen 83 NELLKKGDKQAAR 95 (155)
T ss_dssp HHHHHTT-HHHHH
T ss_pred HHHHhCCCHHHHH
Confidence 8888889998888
No 329
>PF04840 Vps16_C: Vps16, C-terminal region; InterPro: IPR006925 This protein forms part of the Class C vacuolar protein sorting (Vps) complex. Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm
Probab=20.81 E-value=73 Score=29.23 Aligned_cols=68 Identities=18% Similarity=0.161 Sum_probs=45.9
Q ss_pred CchhHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHcCChhhHhhchHHhhhhhCCC
Q 027539 124 TSADGRTLLESSKIALDKGKLEDAVNYGTKALARMIAVCGPYHRTTASTYSLLAVVLYHTGDFNQVRQSSVVFQCQLGDS 203 (222)
Q Consensus 124 ~s~~a~~lle~g~~~l~qG~~e~A~~L~~eAL~i~eqV~G~~HpevA~~y~~LA~vy~~~Gd~~eAi~~~~~~~~~~~~~ 203 (222)
+||.+++-| ..+++..|..++|..+..+ +++ ..-...|-..|++.+|+ +-..+.+|.
T Consensus 235 KsPIGyepF--v~~~~~~~~~~eA~~yI~k-----------~~~------~~rv~~y~~~~~~~~A~----~~A~~~kd~ 291 (319)
T PF04840_consen 235 KSPIGYEPF--VEACLKYGNKKEASKYIPK-----------IPD------EERVEMYLKCGDYKEAA----QEAFKEKDI 291 (319)
T ss_pred CCCCChHHH--HHHHHHCCCHHHHHHHHHh-----------CCh------HHHHHHHHHCCCHHHHH----HHHHHcCCH
Confidence 567777777 7778888888888777766 111 22345667899999999 766667776
Q ss_pred CceEEEeeeec
Q 027539 204 KSSIIITSFCT 214 (222)
Q Consensus 204 ~~a~~i~e~~~ 214 (222)
..=..|..+|.
T Consensus 292 ~~L~~i~~~~~ 302 (319)
T PF04840_consen 292 DLLKQILKRCP 302 (319)
T ss_pred HHHHHHHHHCC
Confidence 54444555554
No 330
>COG3947 Response regulator containing CheY-like receiver and SARP domains [Signal transduction mechanisms]
Probab=20.77 E-value=1.1e+02 Score=28.65 Aligned_cols=53 Identities=21% Similarity=0.194 Sum_probs=43.0
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHcCChhhHh
Q 027539 130 TLLESSKIALDKGKLEDAVNYGTKALARMIAVCGPYHRTTASTYSLLAVVLYHTGDFNQVR 190 (222)
Q Consensus 130 ~lle~g~~~l~qG~~e~A~~L~~eAL~i~eqV~G~~HpevA~~y~~LA~vy~~~Gd~~eAi 190 (222)
-+.-.++.++..|.+.+|.+|.+.+++ +||-.-+.+-.|-++|..+||--.|+
T Consensus 281 llgkva~~yle~g~~neAi~l~qr~lt--------ldpL~e~~nk~lm~~la~~gD~is~~ 333 (361)
T COG3947 281 LLGKVARAYLEAGKPNEAIQLHQRALT--------LDPLSEQDNKGLMASLATLGDEISAI 333 (361)
T ss_pred HHHHHHHHHHHcCChHHHHHHHHHHhh--------cChhhhHHHHHHHHHHHHhccchhhh
Confidence 344456778889999999999998886 47777788888889999999977777
No 331
>KOG4509 consensus Uncharacterized conserved protein [Function unknown]
Probab=20.47 E-value=1.6e+02 Score=25.60 Aligned_cols=91 Identities=12% Similarity=0.059 Sum_probs=61.9
Q ss_pred ccCchhHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHcCChhhHhhchHHhhhh--
Q 027539 122 GCTSADGRTLLESSKIALDKGKLEDAVNYGTKALARMIAVCGPYHRTTASTYSLLAVVLYHTGDFNQVRQSSVVFQCQ-- 199 (222)
Q Consensus 122 ~p~s~~a~~lle~g~~~l~qG~~e~A~~L~~eAL~i~eqV~G~~HpevA~~y~~LA~vy~~~Gd~~eAi~~~~~~~~~-- 199 (222)
.|.+.-|-..+-.|.-.-.+|++..|+-.|.+.+.+..++.--+--|-|.-.+.++....-+.+.+.-. . |-+|
T Consensus 9 dp~~~aAa~iL~~AVe~d~e~k~pqALl~YkeGIdLi~e~lk~~~ldna~R~~i~~k~s~Ym~ka~die---k-YLdqek 84 (247)
T KOG4509|consen 9 DPLLKAAAPILCDAVEDDKEGKVPQALLCYKEGIDLIAEALKGMKLDNADRCKIMAKFSDYMDKAADIE---K-YLDQEK 84 (247)
T ss_pred ChhhhhhhhHHHHHhcccccccccHHHHHHhhhHHHHHHHHccCCCcchHHHHHHHHHHHHHHHHHHHH---H-Hhhhhc
Confidence 344444444444444455788999999999999999999998888888888888888776664443333 2 2222
Q ss_pred -hCCCCceEEEeeeechh
Q 027539 200 -LGDSKSSIIITSFCTEV 216 (222)
Q Consensus 200 -~~~~~~a~~i~e~~~~~ 216 (222)
-|.+-.-++|.+-.||+
T Consensus 85 Edgk~~eQ~KI~~NaTG~ 102 (247)
T KOG4509|consen 85 EDGKTHEQIKIAANATGF 102 (247)
T ss_pred cccchhhhhhhhhccCcc
Confidence 34456667777777775
No 332
>PF14357 DUF4404: Domain of unknown function (DUF4404)
Probab=20.40 E-value=1.7e+02 Score=21.61 Aligned_cols=32 Identities=19% Similarity=0.148 Sum_probs=25.5
Q ss_pred HHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHcC
Q 027539 149 NYGTKALARMIAVCGPYHRTTASTYSLLAVVLYHTG 184 (222)
Q Consensus 149 ~L~~eAL~i~eqV~G~~HpevA~~y~~LA~vy~~~G 184 (222)
+=.++|+.-|| .-||.++.+.+++...+..||
T Consensus 53 d~l~~av~~FE----~~HP~l~~~lr~i~~sLa~MG 84 (85)
T PF14357_consen 53 DRLNEAVERFE----ASHPKLAGILRNIMDSLANMG 84 (85)
T ss_pred HHHHHHHHHHH----HhCCcHHHHHHHHHHHHHHCC
Confidence 33445555555 589999999999999999998
No 333
>COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only]
Probab=20.37 E-value=2.4e+02 Score=25.55 Aligned_cols=58 Identities=19% Similarity=0.111 Sum_probs=40.0
Q ss_pred HHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHcCChhhH
Q 027539 128 GRTLLESSKIALDKGKLEDAVNYGTKALARMIAVCGPYHRTTASTYSLLAVVLYHTGDFNQV 189 (222)
Q Consensus 128 a~~lle~g~~~l~qG~~e~A~~L~~eAL~i~eqV~G~~HpevA~~y~~LA~vy~~~Gd~~eA 189 (222)
.++.+-.|+.++++|..++|..||+ |++-.+||.-+-. --++.-|+.++..+.+.+++
T Consensus 237 TEtyFYL~K~~l~~G~~~~A~~LfK--LaiannVynfVE~--RyA~~EL~~l~q~~~~l~~~ 294 (297)
T COG4785 237 TETYFYLGKYYLSLGDLDEATALFK--LAVANNVYNFVEH--RYALLELSLLGQDQDDLAES 294 (297)
T ss_pred HHHHHHHHHHHhccccHHHHHHHHH--HHHHHhHHHHHHH--HHHHHHHHHhccccchhhhh
Confidence 4455667999999999999999996 4555677764322 23445667777666555554
No 334
>KOG4322 consensus Anaphase-promoting complex (APC), subunit 5 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=20.30 E-value=2.1e+02 Score=28.04 Aligned_cols=51 Identities=18% Similarity=0.141 Sum_probs=41.4
Q ss_pred hHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHcCChhhHhhchHHh
Q 027539 144 LEDAVNYGTKALARMIAVCGPYHRTTASTYSLLAVVLYHTGDFNQVRQSSVVF 196 (222)
Q Consensus 144 ~e~A~~L~~eAL~i~eqV~G~~HpevA~~y~~LA~vy~~~Gd~~eAi~~~~~~ 196 (222)
++.+.+.+.+|-+++.++ ..|.-++..+..+|++|.+.||-++=--+...|
T Consensus 415 ld~~~~~L~~A~~~f~kL--~~he~ildv~yf~A~~yn~lGd~~eRn~~AslF 465 (482)
T KOG4322|consen 415 LDGFPRYLDLAQSIFYKL--GCHEKILDVTYFSAYQYNHLGDSPERNLLASLF 465 (482)
T ss_pred HHhhHHHHHHHHHHHHHc--cchHHHHHHHHHHHHHHHhhcCchHHHHHHHHH
Confidence 566778888888888876 689999999999999999999988766333344
No 335
>smart00748 HEPN Higher Eukarytoes and Prokaryotes Nucleotide-binding domain.
Probab=20.24 E-value=2.6e+02 Score=20.82 Aligned_cols=30 Identities=27% Similarity=0.386 Sum_probs=22.6
Q ss_pred hHHHHHHHHHHHHhcCChHHHHHHHHHHHH
Q 027539 127 DGRTLLESSKIALDKGKLEDAVNYGTKALA 156 (222)
Q Consensus 127 ~a~~lle~g~~~l~qG~~e~A~~L~~eAL~ 156 (222)
-|++.++.|+..+..|.++.|.-...||+.
T Consensus 3 ~A~~~l~~A~~~~~~g~y~~a~f~aqqavE 32 (113)
T smart00748 3 RAKRFLEAAKLDLEKGFYDLAAFLSQQAAE 32 (113)
T ss_pred hHHHHHHHHHHHHHcCCchHHHHHHHHHHH
Confidence 477889999999999998876655555543
Done!