Query 027539
Match_columns 222
No_of_seqs 156 out of 295
Neff 5.9
Searched_HMMs 29240
Date Mon Mar 25 19:23:47 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/027539.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/027539hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3qww_A SET and MYND domain-con 99.4 2.3E-13 8E-18 126.5 6.2 79 127-215 339-417 (433)
2 3n71_A Histone lysine methyltr 99.3 8.8E-13 3E-17 124.4 6.2 79 127-215 350-428 (490)
3 3qwp_A SET and MYND domain-con 99.3 1.4E-12 4.8E-17 120.7 5.9 79 127-215 328-406 (429)
4 3n71_A Histone lysine methyltr 99.2 9E-12 3.1E-16 117.5 4.8 79 127-215 308-386 (490)
5 3qww_A SET and MYND domain-con 99.2 1.3E-11 4.5E-16 114.8 4.2 79 127-215 297-375 (433)
6 3qwp_A SET and MYND domain-con 98.9 2.5E-10 8.5E-15 105.7 2.0 78 128-215 287-364 (429)
7 3edt_B KLC 2, kinesin light ch 98.4 2.5E-07 8.5E-12 74.8 6.0 65 126-190 83-147 (283)
8 3edt_B KLC 2, kinesin light ch 98.4 2.5E-07 8.5E-12 74.8 6.0 65 126-190 41-105 (283)
9 4gcn_A Protein STI-1; structur 98.4 1.8E-07 6.2E-12 70.7 4.6 56 127-190 7-62 (127)
10 4g1t_A Interferon-induced prot 98.3 3.1E-07 1.1E-11 81.3 4.2 57 134-190 57-114 (472)
11 3nf1_A KLC 1, kinesin light ch 98.3 6.1E-06 2.1E-10 67.8 10.4 77 114-190 12-89 (311)
12 4gcn_A Protein STI-1; structur 98.2 5E-06 1.7E-10 62.7 8.2 68 130-208 44-111 (127)
13 4gco_A Protein STI-1; structur 98.2 1.8E-06 6.3E-11 65.3 5.4 57 126-190 11-67 (126)
14 2l6j_A TPR repeat-containing p 98.2 2.3E-06 7.9E-11 60.6 5.5 56 127-190 3-58 (111)
15 3nf1_A KLC 1, kinesin light ch 98.2 2.5E-06 8.7E-11 70.1 6.1 64 127-190 110-173 (311)
16 3upv_A Heat shock protein STI1 98.1 3E-06 1E-10 62.3 5.5 57 126-190 2-58 (126)
17 3rkv_A Putative peptidylprolyl 98.1 3.5E-06 1.2E-10 64.9 6.0 66 125-190 8-83 (162)
18 3ma5_A Tetratricopeptide repea 98.1 3.8E-06 1.3E-10 60.6 4.8 64 129-210 8-71 (100)
19 3u3w_A Transcriptional activat 98.0 6.7E-06 2.3E-10 69.6 6.6 63 127-190 154-216 (293)
20 3vtx_A MAMA; tetratricopeptide 98.0 5.6E-06 1.9E-10 64.2 5.5 62 131-210 110-171 (184)
21 1hxi_A PEX5, peroxisome target 98.0 9.8E-06 3.3E-10 60.7 6.0 52 131-190 20-71 (121)
22 3ro3_A PINS homolog, G-protein 97.9 1.2E-05 4E-10 59.0 5.6 73 127-211 88-160 (164)
23 3sz7_A HSC70 cochaperone (SGT) 97.9 1.3E-05 4.6E-10 61.7 6.1 59 124-190 7-65 (164)
24 3gyz_A Chaperone protein IPGC; 97.9 1.1E-05 3.9E-10 63.7 5.7 57 126-190 34-90 (151)
25 4gco_A Protein STI-1; structur 97.9 1.1E-05 3.9E-10 60.8 5.5 63 129-209 48-110 (126)
26 1na3_A Designed protein CTPR2; 97.9 2.4E-05 8.4E-10 53.3 6.5 56 127-190 8-63 (91)
27 3ro3_A PINS homolog, G-protein 97.9 3.7E-05 1.3E-09 56.3 7.8 61 128-190 49-109 (164)
28 3ulq_A Response regulator aspa 97.9 1.1E-05 3.7E-10 70.3 5.4 63 126-190 182-244 (383)
29 3q49_B STIP1 homology and U bo 97.9 2.2E-05 7.7E-10 57.6 6.3 59 124-190 5-63 (137)
30 2dba_A Smooth muscle cell asso 97.9 3E-05 1E-09 57.0 6.8 64 122-190 22-85 (148)
31 3ulq_A Response regulator aspa 97.9 1.7E-05 5.8E-10 69.0 6.2 64 126-190 141-204 (383)
32 4ga2_A E3 SUMO-protein ligase 97.9 1.3E-05 4.5E-10 61.9 4.8 53 130-190 33-85 (150)
33 3k9i_A BH0479 protein; putativ 97.9 2.5E-05 8.5E-10 57.2 6.1 56 127-190 26-81 (117)
34 3gw4_A Uncharacterized protein 97.9 3E-05 1E-09 60.2 6.8 64 126-190 64-127 (203)
35 2qfc_A PLCR protein; TPR, HTH, 97.9 2.3E-05 7.9E-10 66.2 6.6 62 127-190 154-216 (293)
36 2hr2_A Hypothetical protein; a 97.8 3.5E-05 1.2E-09 62.8 6.9 73 127-210 56-132 (159)
37 1qqe_A Vesicular transport pro 97.8 2.9E-05 9.8E-10 66.0 6.7 61 128-190 36-97 (292)
38 2v5f_A Prolyl 4-hydroxylase su 97.8 2.9E-05 9.9E-10 57.1 5.8 66 127-197 4-69 (104)
39 2qfc_A PLCR protein; TPR, HTH, 97.8 2E-05 6.8E-10 66.7 5.5 71 129-211 197-268 (293)
40 2kc7_A BFR218_protein; tetratr 97.8 2.2E-05 7.7E-10 55.0 5.0 52 131-190 3-55 (99)
41 1hz4_A MALT regulatory protein 97.8 5.6E-05 1.9E-09 65.1 8.3 63 128-190 93-155 (373)
42 3gw4_A Uncharacterized protein 97.8 4E-05 1.4E-09 59.5 6.4 63 126-190 24-86 (203)
43 3upv_A Heat shock protein STI1 97.8 3.1E-05 1.1E-09 56.7 5.5 54 129-190 39-92 (126)
44 1qqe_A Vesicular transport pro 97.8 3.9E-05 1.3E-09 65.2 6.8 62 127-190 76-138 (292)
45 2kat_A Uncharacterized protein 97.8 4.6E-05 1.6E-09 55.1 6.3 55 128-190 19-73 (115)
46 4gyw_A UDP-N-acetylglucosamine 97.8 1.3E-05 4.5E-10 78.6 4.1 59 122-190 5-63 (723)
47 2hr2_A Hypothetical protein; a 97.8 2.1E-05 7.2E-10 64.1 4.6 74 126-209 9-86 (159)
48 1elr_A TPR2A-domain of HOP; HO 97.8 8.9E-05 3E-09 52.8 7.5 61 129-190 39-99 (131)
49 3u3w_A Transcriptional activat 97.7 3.4E-05 1.2E-09 65.2 5.9 74 126-211 194-268 (293)
50 3gyz_A Chaperone protein IPGC; 97.7 2.2E-05 7.6E-10 62.0 4.4 61 123-197 67-127 (151)
51 2xev_A YBGF; tetratricopeptide 97.7 4.5E-05 1.6E-09 55.3 5.8 54 132-190 6-59 (129)
52 2lni_A Stress-induced-phosphop 97.7 3.8E-05 1.3E-09 55.2 5.2 60 123-190 11-70 (133)
53 2xcb_A PCRH, regulatory protei 97.7 6.5E-05 2.2E-09 56.8 6.7 57 126-190 16-72 (142)
54 2xev_A YBGF; tetratricopeptide 97.7 7.4E-05 2.5E-09 54.1 6.8 57 129-190 40-96 (129)
55 3sz7_A HSC70 cochaperone (SGT) 97.7 3.9E-05 1.3E-09 59.0 5.5 54 129-190 46-99 (164)
56 2vgx_A Chaperone SYCD; alterna 97.7 3.8E-05 1.3E-09 59.4 5.1 57 126-190 19-75 (148)
57 3q15_A PSP28, response regulat 97.7 5.1E-05 1.8E-09 66.1 6.5 62 126-190 220-281 (378)
58 3q15_A PSP28, response regulat 97.7 7.4E-05 2.5E-09 65.1 7.3 63 126-190 180-242 (378)
59 3vtx_A MAMA; tetratricopeptide 97.7 6.1E-05 2.1E-09 58.3 5.9 53 130-190 7-59 (184)
60 1elr_A TPR2A-domain of HOP; HO 97.7 8.3E-05 2.8E-09 52.9 6.1 56 127-190 3-58 (131)
61 3rkv_A Putative peptidylprolyl 97.6 5.1E-05 1.8E-09 58.2 5.1 55 128-190 63-117 (162)
62 3qky_A Outer membrane assembly 97.6 6E-05 2.1E-09 62.0 5.7 62 124-190 11-72 (261)
63 3ro2_A PINS homolog, G-protein 97.6 0.0001 3.5E-09 60.2 7.0 73 128-212 263-335 (338)
64 3urz_A Uncharacterized protein 97.6 9.1E-05 3.1E-09 59.8 6.5 56 127-190 3-74 (208)
65 1elw_A TPR1-domain of HOP; HOP 97.6 0.00012 4.2E-09 51.0 6.1 55 128-190 4-58 (118)
66 2vyi_A SGTA protein; chaperone 97.6 0.00012 4.3E-09 51.8 6.1 57 126-190 10-66 (131)
67 3q49_B STIP1 homology and U bo 97.6 0.00014 4.6E-09 53.3 6.5 54 129-190 44-97 (137)
68 4a1s_A PINS, partner of inscut 97.6 9.7E-05 3.3E-09 63.8 6.4 73 128-212 303-375 (411)
69 2ifu_A Gamma-SNAP; membrane fu 97.6 9.4E-05 3.2E-09 63.3 6.2 61 127-190 115-175 (307)
70 2vgx_A Chaperone SYCD; alterna 97.6 0.00011 3.6E-09 56.8 6.0 52 131-190 58-109 (148)
71 4g1t_A Interferon-induced prot 97.6 3.8E-05 1.3E-09 67.8 3.9 61 130-190 96-158 (472)
72 2c2l_A CHIP, carboxy terminus 97.6 7E-05 2.4E-09 63.8 5.2 56 127-190 3-58 (281)
73 1a17_A Serine/threonine protei 97.6 0.00015 5E-09 54.3 6.3 57 126-190 11-67 (166)
74 1elw_A TPR1-domain of HOP; HOP 97.6 0.00016 5.6E-09 50.4 6.2 54 129-190 39-92 (118)
75 1hxi_A PEX5, peroxisome target 97.5 7.5E-05 2.6E-09 55.7 4.6 62 122-197 47-108 (121)
76 2kck_A TPR repeat; tetratricop 97.5 8.6E-05 2.9E-09 51.5 4.5 51 132-190 10-60 (112)
77 1ihg_A Cyclophilin 40; ppiase 97.5 0.00014 4.8E-09 65.1 6.7 65 126-190 221-293 (370)
78 2xcb_A PCRH, regulatory protei 97.5 0.00011 3.8E-09 55.4 4.9 53 130-190 54-106 (142)
79 3ro2_A PINS homolog, G-protein 97.5 0.0004 1.4E-08 56.7 8.6 61 128-190 43-103 (338)
80 2ifu_A Gamma-SNAP; membrane fu 97.5 0.00019 6.4E-09 61.3 6.9 66 123-190 30-96 (307)
81 2lni_A Stress-induced-phosphop 97.5 0.00019 6.3E-09 51.5 5.5 54 129-190 51-104 (133)
82 4ga2_A E3 SUMO-protein ligase 97.5 0.00012 4E-09 56.5 4.7 58 123-190 62-119 (150)
83 2vyi_A SGTA protein; chaperone 97.4 0.00029 1E-08 49.8 6.4 54 129-190 47-100 (131)
84 4gyw_A UDP-N-acetylglucosamine 97.4 0.00012 4.2E-09 71.8 5.5 53 130-190 79-131 (723)
85 3sf4_A G-protein-signaling mod 97.4 0.00025 8.6E-09 60.3 6.8 72 128-211 47-118 (406)
86 1hh8_A P67PHOX, NCF-2, neutrop 97.4 0.00025 8.7E-09 55.7 6.3 55 128-190 37-91 (213)
87 2fbn_A 70 kDa peptidylprolyl i 97.4 0.00015 5.3E-09 57.3 5.0 55 128-190 88-142 (198)
88 1a17_A Serine/threonine protei 97.4 0.0003 1E-08 52.5 6.4 55 128-190 47-101 (166)
89 1fch_A Peroxisomal targeting s 97.4 0.00011 3.7E-09 62.2 4.3 74 129-212 286-362 (368)
90 4a1s_A PINS, partner of inscut 97.4 0.00034 1.2E-08 60.4 7.5 70 128-209 86-155 (411)
91 2fbn_A 70 kDa peptidylprolyl i 97.4 0.0002 6.8E-09 56.7 5.6 63 126-190 36-108 (198)
92 2dba_A Smooth muscle cell asso 97.4 0.00026 8.9E-09 51.8 5.7 55 128-190 65-119 (148)
93 1na0_A Designed protein CTPR3; 97.4 0.00038 1.3E-08 48.8 6.4 55 128-190 9-63 (125)
94 3sf4_A G-protein-signaling mod 97.4 0.00025 8.7E-09 60.3 6.3 62 127-190 266-327 (406)
95 2kck_A TPR repeat; tetratricop 97.4 0.00019 6.6E-09 49.7 4.7 54 129-190 41-97 (112)
96 2pl2_A Hypothetical conserved 97.4 0.00011 3.8E-09 59.6 3.7 58 123-190 70-138 (217)
97 1na0_A Designed protein CTPR3; 97.3 0.00045 1.5E-08 48.4 6.4 53 130-190 45-97 (125)
98 2yhc_A BAMD, UPF0169 lipoprote 97.3 0.00046 1.6E-08 56.0 7.1 60 127-191 3-62 (225)
99 1wao_1 Serine/threonine protei 97.3 0.00015 5E-09 67.0 4.4 76 128-211 40-134 (477)
100 3cv0_A Peroxisome targeting si 97.3 0.00047 1.6E-08 56.8 7.0 52 131-190 24-75 (327)
101 3qou_A Protein YBBN; thioredox 97.3 0.00019 6.6E-09 61.1 4.4 94 84-190 71-171 (287)
102 1xnf_A Lipoprotein NLPI; TPR, 97.3 0.00039 1.3E-08 56.1 6.0 57 126-190 41-97 (275)
103 4eqf_A PEX5-related protein; a 97.3 0.0004 1.4E-08 59.2 6.3 56 127-190 212-267 (365)
104 3urz_A Uncharacterized protein 97.3 0.00027 9.4E-09 56.9 5.0 50 133-190 59-108 (208)
105 1hh8_A P67PHOX, NCF-2, neutrop 97.3 0.0002 6.7E-09 56.4 3.9 62 129-190 72-141 (213)
106 3u4t_A TPR repeat-containing p 97.3 0.00039 1.3E-08 56.3 5.8 68 127-212 73-140 (272)
107 3uq3_A Heat shock protein STI1 97.3 0.00082 2.8E-08 53.3 7.6 61 129-190 39-99 (258)
108 4i17_A Hypothetical protein; T 97.2 0.00046 1.6E-08 55.2 6.1 58 126-190 5-62 (228)
109 3hym_B Cell division cycle pro 97.2 0.00039 1.3E-08 57.3 5.5 62 129-190 194-256 (330)
110 1p5q_A FKBP52, FK506-binding p 97.2 0.00034 1.2E-08 61.2 5.4 55 128-190 196-250 (336)
111 1fch_A Peroxisomal targeting s 97.2 0.00063 2.1E-08 57.4 6.6 56 127-190 216-271 (368)
112 4i17_A Hypothetical protein; T 97.2 0.00055 1.9E-08 54.7 5.9 54 129-190 43-96 (228)
113 2pl2_A Hypothetical conserved 97.2 0.00051 1.8E-08 55.6 5.7 53 130-190 7-59 (217)
114 4eqf_A PEX5-related protein; a 97.2 0.00035 1.2E-08 59.6 4.9 78 128-215 281-362 (365)
115 2ho1_A Type 4 fimbrial biogene 97.2 0.00036 1.2E-08 56.0 4.6 55 128-190 37-91 (252)
116 1p5q_A FKBP52, FK506-binding p 97.2 0.00017 5.9E-09 63.1 2.9 65 126-190 145-216 (336)
117 3ieg_A DNAJ homolog subfamily 97.1 0.00063 2.1E-08 56.5 6.0 56 127-190 2-57 (359)
118 2r5s_A Uncharacterized protein 97.1 0.00032 1.1E-08 54.7 3.9 57 129-197 7-63 (176)
119 1xnf_A Lipoprotein NLPI; TPR, 97.1 0.00067 2.3E-08 54.7 6.0 53 130-190 79-131 (275)
120 3uq3_A Heat shock protein STI1 97.1 0.00059 2E-08 54.2 5.5 53 130-190 175-227 (258)
121 3hym_B Cell division cycle pro 97.1 0.00048 1.7E-08 56.8 5.1 65 128-210 236-300 (330)
122 2fo7_A Synthetic consensus TPR 97.1 0.00068 2.3E-08 47.8 5.2 51 132-190 5-55 (136)
123 2ho1_A Type 4 fimbrial biogene 97.1 0.0009 3.1E-08 53.6 6.4 55 130-190 107-161 (252)
124 3k9i_A BH0479 protein; putativ 97.1 0.00021 7.1E-09 52.1 2.2 46 140-190 2-47 (117)
125 1zu2_A Mitochondrial import re 97.1 0.00013 4.6E-09 59.2 1.3 69 122-197 32-114 (158)
126 2c2l_A CHIP, carboxy terminus 97.0 0.00052 1.8E-08 58.3 4.8 54 129-190 39-92 (281)
127 3as5_A MAMA; tetratricopeptide 97.0 0.0014 4.7E-08 49.0 6.5 54 129-190 43-96 (186)
128 2if4_A ATFKBP42; FKBP-like, al 97.0 0.00061 2.1E-08 59.7 5.2 53 130-190 232-284 (338)
129 1ihg_A Cyclophilin 40; ppiase 97.0 0.00056 1.9E-08 61.1 4.8 56 127-190 272-327 (370)
130 2fo7_A Synthetic consensus TPR 97.0 0.0014 4.8E-08 46.1 6.0 52 131-190 72-123 (136)
131 3as5_A MAMA; tetratricopeptide 97.0 0.0013 4.5E-08 49.1 6.0 53 130-190 78-130 (186)
132 2y4t_A DNAJ homolog subfamily 97.0 0.0012 3.9E-08 57.5 6.5 60 123-190 21-80 (450)
133 1kt0_A FKBP51, 51 kDa FK506-bi 97.0 0.00028 9.4E-09 64.6 2.6 65 126-190 266-337 (457)
134 2vq2_A PILW, putative fimbrial 97.0 0.0016 5.4E-08 50.5 6.6 56 127-190 7-62 (225)
135 3qky_A Outer membrane assembly 97.0 0.0011 3.9E-08 54.3 6.1 58 128-190 52-117 (261)
136 3cv0_A Peroxisome targeting si 97.0 0.00091 3.1E-08 55.0 5.4 72 130-211 242-317 (327)
137 1wao_1 Serine/threonine protei 97.0 7E-05 2.4E-09 69.2 -1.6 55 128-190 6-60 (477)
138 2yhc_A BAMD, UPF0169 lipoprote 96.9 0.0027 9.1E-08 51.4 7.9 54 132-190 151-204 (225)
139 2q7f_A YRRB protein; TPR, prot 96.9 0.00015 5.2E-09 57.4 0.3 58 128-197 57-114 (243)
140 2e2e_A Formate-dependent nitri 96.9 0.0017 5.9E-08 49.8 6.2 53 130-190 80-135 (177)
141 2vq2_A PILW, putative fimbrial 96.9 0.0018 6.2E-08 50.2 6.3 55 130-190 78-133 (225)
142 3u4t_A TPR repeat-containing p 96.9 0.00074 2.5E-08 54.6 4.0 65 129-197 177-244 (272)
143 1kt0_A FKBP51, 51 kDa FK506-bi 96.9 0.001 3.6E-08 60.7 5.4 55 128-190 317-371 (457)
144 3ieg_A DNAJ homolog subfamily 96.9 0.0013 4.3E-08 54.6 5.4 52 131-190 275-326 (359)
145 4abn_A Tetratricopeptide repea 96.9 0.00067 2.3E-08 62.1 4.1 57 126-190 100-157 (474)
146 1w3b_A UDP-N-acetylglucosamine 96.8 0.0012 4.1E-08 56.8 5.4 49 134-190 277-325 (388)
147 3fp2_A TPR repeat-containing p 96.8 0.00086 3E-08 59.6 4.5 57 126-190 23-79 (537)
148 2vsy_A XCC0866; transferase, g 96.8 0.0019 6.4E-08 59.6 6.7 54 129-190 58-111 (568)
149 1w3b_A UDP-N-acetylglucosamine 96.8 0.0014 4.8E-08 56.4 5.5 55 128-190 67-121 (388)
150 2q7f_A YRRB protein; TPR, prot 96.8 0.0025 8.4E-08 50.3 6.5 60 126-197 89-148 (243)
151 4b4t_Q 26S proteasome regulato 96.8 0.0016 5.4E-08 56.7 5.6 62 127-190 134-195 (434)
152 2gw1_A Mitochondrial precursor 96.7 0.0018 6.1E-08 57.0 5.5 55 127-190 5-59 (514)
153 2y4t_A DNAJ homolog subfamily 96.7 0.0022 7.5E-08 55.8 5.8 54 129-190 296-349 (450)
154 2xpi_A Anaphase-promoting comp 96.6 0.0042 1.4E-07 56.2 7.4 60 129-190 476-536 (597)
155 3bee_A Putative YFRE protein; 96.6 0.0033 1.1E-07 45.7 5.5 59 122-190 2-63 (93)
156 1hz4_A MALT regulatory protein 96.6 0.0056 1.9E-07 52.4 7.7 61 128-190 53-113 (373)
157 4abn_A Tetratricopeptide repea 96.6 0.002 6.7E-08 58.9 5.1 56 130-190 215-278 (474)
158 2r5s_A Uncharacterized protein 96.6 0.002 6.9E-08 50.0 4.5 62 122-197 104-167 (176)
159 2vsy_A XCC0866; transferase, g 96.6 0.0018 6.2E-08 59.7 4.9 55 128-190 23-77 (568)
160 2if4_A ATFKBP42; FKBP-like, al 96.6 0.0018 6E-08 56.7 4.5 65 126-190 177-250 (338)
161 2h6f_A Protein farnesyltransfe 96.6 0.002 6.8E-08 58.1 4.8 60 123-190 92-152 (382)
162 2h6f_A Protein farnesyltransfe 96.6 0.002 6.7E-08 58.1 4.8 59 122-190 127-186 (382)
163 2e2e_A Formate-dependent nitri 96.5 0.0045 1.5E-07 47.4 6.1 59 122-190 40-101 (177)
164 2pzi_A Probable serine/threoni 96.5 0.0021 7.2E-08 61.7 5.1 54 129-190 434-487 (681)
165 1ouv_A Conserved hypothetical 96.5 0.0042 1.4E-07 50.9 6.0 54 127-190 5-62 (273)
166 2l6j_A TPR repeat-containing p 96.5 0.0023 7.9E-08 44.6 3.8 57 129-190 39-98 (111)
167 2gw1_A Mitochondrial precursor 96.4 0.0082 2.8E-07 52.6 7.7 89 126-214 184-297 (514)
168 4b4t_Q 26S proteasome regulato 96.3 0.007 2.4E-07 52.5 6.7 72 118-190 165-236 (434)
169 2xpi_A Anaphase-promoting comp 96.3 0.0044 1.5E-07 56.1 5.4 58 128-197 516-573 (597)
170 3mkr_A Coatomer subunit epsilo 96.1 0.0067 2.3E-07 51.8 5.4 24 167-190 197-220 (291)
171 1na3_A Designed protein CTPR2; 96.1 0.016 5.6E-07 38.7 6.3 48 129-184 44-91 (91)
172 3fp2_A TPR repeat-containing p 96.0 0.0089 3E-07 53.0 5.9 52 131-190 313-364 (537)
173 3qou_A Protein YBBN; thioredox 95.9 0.011 3.7E-07 50.0 5.8 59 122-190 215-275 (287)
174 2pzi_A Probable serine/threoni 95.9 0.0047 1.6E-07 59.2 3.7 66 122-190 463-554 (681)
175 3mkr_A Coatomer subunit epsilo 95.7 0.02 6.8E-07 48.8 6.5 54 129-190 201-254 (291)
176 1ouv_A Conserved hypothetical 95.4 0.022 7.4E-07 46.5 5.7 51 130-190 40-98 (273)
177 1pc2_A Mitochondria fission pr 95.3 0.025 8.4E-07 45.6 5.5 61 126-190 30-91 (152)
178 2ond_A Cleavage stimulation fa 94.9 0.017 5.8E-07 48.9 3.5 60 122-190 95-154 (308)
179 4a5x_A MITD1, MIT domain-conta 94.9 0.13 4.5E-06 37.4 7.9 63 119-181 7-70 (86)
180 3rjv_A Putative SEL1 repeat pr 94.7 0.033 1.1E-06 44.8 4.6 54 126-190 16-73 (212)
181 1klx_A Cysteine rich protein B 93.9 0.19 6.5E-06 37.9 7.2 57 127-197 56-120 (138)
182 2ond_A Cleavage stimulation fa 93.8 0.12 4E-06 43.6 6.5 67 122-190 46-119 (308)
183 2kat_A Uncharacterized protein 93.6 0.026 8.8E-07 40.2 1.7 37 146-190 3-39 (115)
184 3ffl_A Anaphase-promoting comp 92.9 0.36 1.2E-05 39.4 7.7 64 130-197 22-86 (167)
185 4f3v_A ESX-1 secretion system 92.7 0.18 6.3E-06 44.1 6.2 54 131-190 174-228 (282)
186 3rjv_A Putative SEL1 repeat pr 92.6 0.13 4.4E-06 41.2 4.6 60 128-197 85-152 (212)
187 4f3v_A ESX-1 secretion system 91.3 0.43 1.5E-05 41.7 6.9 59 132-190 106-191 (282)
188 3o48_A Mitochondria fission 1 91.2 0.26 8.8E-06 39.0 4.8 87 101-192 13-100 (134)
189 3ly7_A Transcriptional activat 90.9 0.3 1E-05 44.6 5.6 60 123-197 274-333 (372)
190 2xm6_A Protein corresponding t 90.8 0.36 1.2E-05 43.2 6.0 51 130-190 365-423 (490)
191 2ooe_A Cleavage stimulation fa 90.7 0.38 1.3E-05 43.5 6.1 58 133-190 277-341 (530)
192 3ffl_A Anaphase-promoting comp 90.4 0.58 2E-05 38.2 6.3 79 127-216 62-157 (167)
193 1y8m_A FIS1; mitochondria, unk 90.2 0.28 9.7E-06 39.2 4.2 62 126-192 37-99 (144)
194 2ooe_A Cleavage stimulation fa 89.8 0.43 1.5E-05 43.2 5.7 60 122-190 317-376 (530)
195 2xm6_A Protein corresponding t 89.7 0.79 2.7E-05 41.0 7.3 55 126-190 37-99 (490)
196 1nzn_A CGI-135 protein, fissio 89.4 1.9 6.5E-05 33.4 8.3 59 129-191 36-95 (126)
197 3mkq_A Coatomer beta'-subunit; 89.2 0.29 9.8E-06 45.9 4.1 71 130-209 682-758 (814)
198 2kc7_A BFR218_protein; tetratr 88.9 0.45 1.5E-05 32.3 4.0 35 130-169 37-71 (99)
199 1klx_A Cysteine rich protein B 88.4 0.49 1.7E-05 35.5 4.3 50 134-197 31-84 (138)
200 1b89_A Protein (clathrin heavy 87.4 0.22 7.5E-06 46.5 2.0 48 130-197 124-171 (449)
201 3ma5_A Tetratricopeptide repea 86.9 0.21 7.1E-06 35.1 1.2 25 166-190 3-27 (100)
202 2w2u_A Hypothetical P60 katani 86.8 1.4 4.7E-05 31.7 5.6 37 126-162 17-53 (83)
203 2v6y_A AAA family ATPase, P60 85.9 1.6 5.6E-05 31.1 5.6 37 126-162 9-45 (83)
204 3ly7_A Transcriptional activat 85.5 1.6 5.5E-05 39.7 6.7 71 120-190 188-297 (372)
205 2v5f_A Prolyl 4-hydroxylase su 84.4 5.2 0.00018 28.3 7.8 43 125-177 45-87 (104)
206 1xi4_A Clathrin heavy chain; a 84.2 1.4 4.9E-05 46.9 6.4 49 129-197 1196-1244(1630)
207 2cpt_A SKD1 protein, vacuolar 83.9 6.3 0.00021 29.9 8.4 56 126-181 16-73 (117)
208 2v6x_A Vacuolar protein sortin 83.2 2.6 8.8E-05 29.9 5.6 56 126-181 11-67 (85)
209 2a9u_A Ubiquitin carboxyl-term 82.5 2.8 9.7E-05 33.2 6.1 46 126-173 40-85 (144)
210 1wfd_A Hypothetical protein 15 82.1 2.8 9.7E-05 30.5 5.6 55 126-180 13-68 (93)
211 3e4b_A ALGK; tetratricopeptide 80.9 2 6.7E-05 38.6 5.3 52 128-190 248-307 (452)
212 1xi4_A Clathrin heavy chain; a 80.8 1.2 4E-05 47.6 4.2 46 132-190 1109-1154(1630)
213 1zu2_A Mitochondrial import re 80.8 0.26 9E-06 39.6 -0.5 38 142-187 16-53 (158)
214 4gns_B Protein CSD3, chitin bi 80.5 2.6 8.8E-05 41.8 6.3 57 129-193 338-394 (754)
215 3mv2_B Coatomer subunit epsilo 80.1 2.2 7.5E-05 37.7 5.2 66 124-197 98-163 (310)
216 2xze_A STAM-binding protein; h 79.3 2.2 7.4E-05 33.8 4.4 46 125-171 37-82 (146)
217 2br9_A 14-3-3E, 14-3-3 protein 79.2 3.4 0.00012 35.3 5.9 47 144-190 146-193 (234)
218 3e4b_A ALGK; tetratricopeptide 74.7 2.7 9.2E-05 37.7 4.3 26 131-156 179-207 (452)
219 1o9d_A 14-3-3-like protein C; 74.5 5.3 0.00018 34.6 5.9 47 144-190 151-198 (260)
220 3bee_A Putative YFRE protein; 74.4 4.5 0.00015 28.6 4.6 35 121-157 38-72 (93)
221 3txn_A 26S proteasome regulato 73.8 14 0.00048 33.5 8.9 65 124-190 135-201 (394)
222 1ya0_A SMG-7 transcript varian 72.3 3.3 0.00011 38.8 4.4 63 130-210 154-216 (497)
223 3ubw_A 14-3-3E, 14-3-3 protein 72.0 6.6 0.00023 34.1 5.9 47 144-190 172-219 (261)
224 3uzd_A 14-3-3 protein gamma; s 71.2 7.2 0.00025 33.6 5.9 47 144-190 147-194 (248)
225 2npm_A 14-3-3 domain containin 70.4 5.4 0.00019 34.6 5.0 46 144-190 172-218 (260)
226 3iqu_A 14-3-3 protein sigma; s 70.3 7.1 0.00024 33.3 5.6 47 144-190 149-196 (236)
227 3mkq_B Coatomer subunit alpha; 70.1 6.7 0.00023 32.0 5.2 53 137-206 14-66 (177)
228 3dra_A Protein farnesyltransfe 68.3 11 0.00036 32.8 6.5 58 125-190 29-89 (306)
229 2wxu_A Phospholipase C; cytoly 67.9 18 0.00062 32.8 8.1 89 77-167 36-137 (370)
230 2ymb_A MITD1, MIT domain-conta 67.6 1.3 4.4E-05 38.5 0.4 90 122-216 17-109 (257)
231 3iqc_A FLIS, flagellar protein 67.6 22 0.00076 27.3 7.6 56 128-183 36-92 (131)
232 3mv2_B Coatomer subunit epsilo 67.1 9.5 0.00033 33.5 6.0 55 128-190 214-273 (310)
233 3efz_A 14-3-3 protein; 14-3-3, 65.2 8 0.00027 33.7 5.0 47 144-190 168-217 (268)
234 3mkq_A Coatomer beta'-subunit; 63.0 7.5 0.00026 36.2 4.8 37 170-210 681-717 (814)
235 2o8p_A 14-3-3 domain containin 62.6 3 0.0001 35.6 1.7 54 140-197 137-191 (227)
236 2rpa_A Katanin P60 ATPase-cont 62.0 18 0.00062 25.6 5.6 52 124-175 8-60 (78)
237 1vh6_A Flagellar protein FLIS; 61.7 11 0.00038 29.6 4.8 54 128-182 33-86 (145)
238 3mkq_B Coatomer subunit alpha; 61.6 6.6 0.00023 32.0 3.6 67 134-209 40-111 (177)
239 2ff4_A Probable regulatory pro 59.4 4.8 0.00016 35.9 2.6 87 128-217 115-235 (388)
240 3u64_A Protein TP_0956; tetrat 58.3 4 0.00014 36.2 1.9 59 141-211 170-235 (301)
241 1b89_A Protein (clathrin heavy 57.1 9.4 0.00032 35.5 4.2 58 133-197 153-230 (449)
242 4gq4_A Menin; tumor suppressor 56.7 15 0.0005 34.4 5.3 42 146-190 282-323 (489)
243 3r8n_T 30S ribosomal protein S 55.1 40 0.0014 24.2 6.5 44 128-171 26-71 (85)
244 4g26_A Pentatricopeptide repea 54.7 18 0.00061 33.3 5.7 56 135-197 147-202 (501)
245 2qsr_A Transcription-repair co 52.9 7.4 0.00025 31.4 2.5 42 53-95 45-86 (173)
246 3txn_A 26S proteasome regulato 52.6 26 0.00089 31.7 6.4 56 133-190 104-159 (394)
247 2wm9_A Dedicator of cytokinesi 51.6 33 0.0011 31.3 6.9 53 129-183 88-141 (428)
248 3q7a_A Farnesyltransferase alp 50.9 27 0.00094 31.0 6.1 75 104-190 33-109 (349)
249 4b4t_P 26S proteasome regulato 50.9 57 0.0019 29.5 8.4 60 132-194 141-201 (445)
250 2dl1_A Spartin; SPG20, MIT, st 50.5 26 0.00087 26.8 5.0 65 126-190 20-98 (116)
251 1om2_A Protein (mitochondrial 50.4 16 0.00055 26.9 3.8 30 129-158 21-50 (95)
252 3ax2_A Mitochondrial import re 49.0 6.9 0.00023 27.5 1.5 29 130-158 19-47 (73)
253 1orj_A Flagellar protein FLIS; 46.7 38 0.0013 25.9 5.6 55 128-182 29-88 (130)
254 4b4t_O 26S proteasome regulato 44.3 86 0.003 27.8 8.4 61 129-190 128-189 (393)
255 4g26_A Pentatricopeptide repea 43.4 34 0.0012 31.4 5.7 55 135-196 112-166 (501)
256 3eab_A Spastin; spastin, MIT, 43.3 28 0.00096 25.3 4.1 37 127-163 15-54 (89)
257 2vkj_A TM1634; membrane protei 41.5 44 0.0015 24.7 4.9 42 126-173 51-92 (106)
258 2vqe_T 30S ribosomal protein S 41.4 77 0.0026 23.7 6.4 44 128-171 33-78 (106)
259 4b4t_R RPN7, 26S proteasome re 41.1 37 0.0013 30.4 5.5 58 130-192 133-190 (429)
260 3t5x_A PCI domain-containing p 41.0 26 0.0009 28.5 4.1 69 119-190 5-73 (203)
261 3i5p_A Nucleoporin NUP170; hel 40.1 26 0.0009 33.1 4.4 78 104-197 17-94 (525)
262 2ff4_A Probable regulatory pro 39.7 81 0.0028 27.8 7.4 49 134-190 177-225 (388)
263 4b4t_P 26S proteasome regulato 39.7 99 0.0034 27.8 8.2 65 124-190 173-238 (445)
264 1olp_A Alpha-toxin; zinc phosp 39.3 30 0.001 31.4 4.4 77 89-167 50-137 (370)
265 1dce_A Protein (RAB geranylger 36.1 15 0.00051 34.4 2.0 49 134-190 69-129 (567)
266 3myv_A SUSD superfamily protei 35.4 27 0.00092 31.6 3.6 32 165-196 185-216 (454)
267 3re2_A Predicted protein; meni 34.9 60 0.0021 29.9 5.7 41 147-190 276-316 (472)
268 2e2a_A Protein (enzyme IIA); h 34.7 76 0.0026 23.5 5.4 36 124-159 16-51 (105)
269 2crb_A Nuclear receptor bindin 34.3 58 0.002 24.0 4.5 32 134-165 21-52 (97)
270 1wcr_A PTS system, N, N'-diace 34.3 78 0.0027 23.4 5.4 36 124-159 14-49 (103)
271 3u84_A Menin; MLL, JUND, ledgf 33.5 57 0.0019 30.6 5.3 42 146-190 297-338 (550)
272 3k1s_A PTS system, cellobiose- 32.7 84 0.0029 23.5 5.4 35 124-158 18-52 (109)
273 3u64_A Protein TP_0956; tetrat 32.0 39 0.0013 29.8 3.9 70 111-190 175-260 (301)
274 4gq2_M Nucleoporin NUP120; bet 31.7 54 0.0019 32.7 5.4 67 132-208 844-925 (950)
275 3l8r_A PTCA, putative PTS syst 30.7 92 0.0032 23.7 5.4 36 124-159 33-68 (120)
276 3kez_A Putative sugar binding 30.1 34 0.0012 31.0 3.4 33 164-196 190-222 (461)
277 2zan_A Vacuolar protein sortin 28.5 12 0.00041 33.9 0.0 51 126-176 9-61 (444)
278 1dce_A Protein (RAB geranylger 28.3 90 0.0031 29.0 6.0 63 121-197 102-167 (567)
279 3snx_A SUSD homolog, putative 28.0 54 0.0019 29.8 4.3 31 165-195 186-216 (460)
280 3dra_A Protein farnesyltransfe 27.4 30 0.001 29.8 2.4 50 133-190 72-130 (306)
281 2hsb_A Hypothetical UPF0332 pr 26.7 1E+02 0.0036 22.2 5.1 45 126-170 10-61 (126)
282 3sy1_A UPF0001 protein YGGS; e 26.3 11 0.00037 31.8 -0.7 80 108-190 27-111 (245)
283 2wb7_A PT26-6P; extra chromoso 25.4 74 0.0025 30.1 4.7 42 145-186 449-490 (526)
284 4gns_B Protein CSD3, chitin bi 25.2 89 0.0031 30.8 5.5 63 146-208 303-392 (754)
285 4fhn_B Nucleoporin NUP120; pro 25.1 64 0.0022 32.7 4.6 62 132-197 846-922 (1139)
286 3mcx_A SUSD superfamily protei 24.4 37 0.0013 30.8 2.5 33 165-197 197-229 (477)
287 3lew_A SUSD-like carbohydrate 23.8 66 0.0022 29.4 4.1 32 165-196 198-229 (495)
288 2cfu_A SDSA1; SDS-hydrolase, l 23.4 1E+02 0.0036 29.4 5.5 55 127-189 448-502 (658)
289 1pc2_A Mitochondria fission pr 22.0 1.1E+02 0.0039 23.8 4.6 52 128-184 71-122 (152)
290 1o3u_A Conserved hypothetical 21.2 1.3E+02 0.0045 22.4 4.7 39 120-158 8-46 (135)
291 3fnb_A Acylaminoacyl peptidase 21.1 1.6E+02 0.0054 25.3 5.9 74 108-181 43-125 (405)
292 2r17_C Vacuolar protein sortin 21.0 1E+02 0.0035 26.9 4.5 33 129-161 100-135 (298)
293 3hw5_A Polymerase acidic prote 20.8 55 0.0019 27.7 2.6 90 1-93 17-107 (261)
No 1
>3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A*
Probab=99.39 E-value=2.3e-13 Score=126.53 Aligned_cols=79 Identities=16% Similarity=0.119 Sum_probs=73.4
Q ss_pred hHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHcCChhhHhhchHHhhhhhCCCCce
Q 027539 127 DGRTLLESSKIALDKGKLEDAVNYGTKALARMIAVCGPYHRTTASTYSLLAVVLYHTGDFNQVRQSSVVFQCQLGDSKSS 206 (222)
Q Consensus 127 ~a~~lle~g~~~l~qG~~e~A~~L~~eAL~i~eqV~G~~HpevA~~y~~LA~vy~~~Gd~~eAi~~~~~~~~~~~~~~~a 206 (222)
.+..+-+.|.++..+|++++|.+++.+||.++++++|+.||+||..|++||.+|..+|++++|+ .++ ++|
T Consensus 339 ~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nLa~~~~~qg~~~eA~----~~~------~~A 408 (433)
T 3qww_A 339 MLHMMYQAMGVCLYMQDWEGALKYGQKIIKPYSKHYPVYSLNVASMWLKLGRLYMGLENKAAGE----KAL------KKA 408 (433)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHHHHHHHTTCHHHHH----HHH------HHH
T ss_pred HHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHhccCHHHHH----HHH------HHH
Confidence 4555566699999999999999999999999999999999999999999999999999999999 888 799
Q ss_pred EEEeeeech
Q 027539 207 IIITSFCTE 215 (222)
Q Consensus 207 ~~i~e~~~~ 215 (222)
+.|.|++.|
T Consensus 409 l~i~~~~lG 417 (433)
T 3qww_A 409 IAIMEVAHG 417 (433)
T ss_dssp HHHHHHHTC
T ss_pred HHHHHHHcC
Confidence 999998876
No 2
>3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus}
Probab=99.33 E-value=8.8e-13 Score=124.40 Aligned_cols=79 Identities=11% Similarity=0.054 Sum_probs=73.4
Q ss_pred hHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHcCChhhHhhchHHhhhhhCCCCce
Q 027539 127 DGRTLLESSKIALDKGKLEDAVNYGTKALARMIAVCGPYHRTTASTYSLLAVVLYHTGDFNQVRQSSVVFQCQLGDSKSS 206 (222)
Q Consensus 127 ~a~~lle~g~~~l~qG~~e~A~~L~~eAL~i~eqV~G~~HpevA~~y~~LA~vy~~~Gd~~eAi~~~~~~~~~~~~~~~a 206 (222)
.+..+-+.|.++..+|++++|.+++.+||.++++++|+.||+||..|++||.+|..+|++++|+ .++ ++|
T Consensus 350 ~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nLa~~~~~~G~~~eA~----~~~------~~A 419 (490)
T 3n71_A 350 VLRLLSIASEVLSYLQAYEEASHYARRMVDGYMKLYHHNNAQLGMAVMRAGLTNWHAGHIEVGH----GMI------CKA 419 (490)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHHHTTCHHHHH----HHH------HHH
T ss_pred HHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHCCCHHHHH----HHH------HHH
Confidence 4555566699999999999999999999999999999999999999999999999999999999 888 799
Q ss_pred EEEeeeech
Q 027539 207 IIITSFCTE 215 (222)
Q Consensus 207 ~~i~e~~~~ 215 (222)
+.|.|++.|
T Consensus 420 l~i~~~~lG 428 (490)
T 3n71_A 420 YAILLVTHG 428 (490)
T ss_dssp HHHHHHHTC
T ss_pred HHHHHHHhC
Confidence 999998876
No 3
>3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A*
Probab=99.31 E-value=1.4e-12 Score=120.75 Aligned_cols=79 Identities=18% Similarity=0.168 Sum_probs=73.7
Q ss_pred hHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHcCChhhHhhchHHhhhhhCCCCce
Q 027539 127 DGRTLLESSKIALDKGKLEDAVNYGTKALARMIAVCGPYHRTTASTYSLLAVVLYHTGDFNQVRQSSVVFQCQLGDSKSS 206 (222)
Q Consensus 127 ~a~~lle~g~~~l~qG~~e~A~~L~~eAL~i~eqV~G~~HpevA~~y~~LA~vy~~~Gd~~eAi~~~~~~~~~~~~~~~a 206 (222)
.+..+-+.|.++..+|++++|++++.++|.++++++|+.||+||..|++||.+|..+|++++|+ .++ ++|
T Consensus 328 ~~~~~~~L~~~y~~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~l~nLa~~~~~~g~~~eA~----~~~------~~A 397 (429)
T 3qwp_A 328 QLKVLDCAMDACINLGLLEEALFYGTRTMEPYRIFFPGSHPVRGVQVMKVGKLQLHQGMFPQAM----KNL------RLA 397 (429)
T ss_dssp HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHHHHHHHTTCHHHHH----HHH------HHH
T ss_pred HHHHHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHcCCCChHHHHHHHHHHHHHHhcCCHHHHH----HHH------HHH
Confidence 4556666799999999999999999999999999999999999999999999999999999999 888 799
Q ss_pred EEEeeeech
Q 027539 207 IIITSFCTE 215 (222)
Q Consensus 207 ~~i~e~~~~ 215 (222)
+.|.+++.|
T Consensus 398 l~i~~~~lG 406 (429)
T 3qwp_A 398 FDIMRVTHG 406 (429)
T ss_dssp HHHHHHHTC
T ss_pred HHHHHHhcC
Confidence 999998876
No 4
>3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus}
Probab=99.19 E-value=9e-12 Score=117.49 Aligned_cols=79 Identities=13% Similarity=0.060 Sum_probs=71.1
Q ss_pred hHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHcCChhhHhhchHHhhhhhCCCCce
Q 027539 127 DGRTLLESSKIALDKGKLEDAVNYGTKALARMIAVCGPYHRTTASTYSLLAVVLYHTGDFNQVRQSSVVFQCQLGDSKSS 206 (222)
Q Consensus 127 ~a~~lle~g~~~l~qG~~e~A~~L~~eAL~i~eqV~G~~HpevA~~y~~LA~vy~~~Gd~~eAi~~~~~~~~~~~~~~~a 206 (222)
.+.++++.+..+..||++++|+++|.++|.+.++++|+.||+|+.++++||.+|..+|+|++|+ .++ ++|
T Consensus 308 ~a~~~le~a~~~~~qg~~~eA~~l~~~aL~~~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~----~~~------~~a 377 (490)
T 3n71_A 308 FSKDTLEKIDKARSEGLYHEVVKLCRECLEKQEPVFADTNLYVLRLLSIASEVLSYLQAYEEAS----HYA------RRM 377 (490)
T ss_dssp HHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHH----HHH------HHH
T ss_pred HHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcCHHHHH----HHH------HHH
Confidence 4566777777888999999999999999999999999999999999999999999999999999 777 678
Q ss_pred EEEeeeech
Q 027539 207 IIITSFCTE 215 (222)
Q Consensus 207 ~~i~e~~~~ 215 (222)
+.|.+++.|
T Consensus 378 L~i~~~~lG 386 (490)
T 3n71_A 378 VDGYMKLYH 386 (490)
T ss_dssp HHHHHHHSC
T ss_pred HHHHHHHcC
Confidence 888777655
No 5
>3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A*
Probab=99.16 E-value=1.3e-11 Score=114.75 Aligned_cols=79 Identities=11% Similarity=-0.025 Sum_probs=71.2
Q ss_pred hHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHcCChhhHhhchHHhhhhhCCCCce
Q 027539 127 DGRTLLESSKIALDKGKLEDAVNYGTKALARMIAVCGPYHRTTASTYSLLAVVLYHTGDFNQVRQSSVVFQCQLGDSKSS 206 (222)
Q Consensus 127 ~a~~lle~g~~~l~qG~~e~A~~L~~eAL~i~eqV~G~~HpevA~~y~~LA~vy~~~Gd~~eAi~~~~~~~~~~~~~~~a 206 (222)
.+...++.++..-++|++++|+++|.++|.+.++++|+.||+||.+|++||.+|..+|+|++|+ .++ ++|
T Consensus 297 ~~~~~le~~~~~~~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~----~~~------~~a 366 (433)
T 3qww_A 297 YARNVIEEFRRAKHYKSPSELLEICELSQEKMSSVFEDSNVYMLHMMYQAMGVCLYMQDWEGAL----KYG------QKI 366 (433)
T ss_dssp HHHHHHHHHHHHTTTSCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHH----HHH------HHH
T ss_pred HHHHHHHHHHHhhhccCHHHHHHHHHHHHHHhhCccChhchHHHHHHHHHHHHHHhhcCHHHHH----HHH------HHH
Confidence 4556677777777889999999999999999999999999999999999999999999999999 777 788
Q ss_pred EEEeeeech
Q 027539 207 IIITSFCTE 215 (222)
Q Consensus 207 ~~i~e~~~~ 215 (222)
+.|.|++.|
T Consensus 367 L~i~~~~lG 375 (433)
T 3qww_A 367 IKPYSKHYP 375 (433)
T ss_dssp HHHHHHHSC
T ss_pred HHHHHHHcC
Confidence 888887765
No 6
>3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A*
Probab=98.91 E-value=2.5e-10 Score=105.65 Aligned_cols=78 Identities=5% Similarity=-0.081 Sum_probs=69.6
Q ss_pred HHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHcCChhhHhhchHHhhhhhCCCCceE
Q 027539 128 GRTLLESSKIALDKGKLEDAVNYGTKALARMIAVCGPYHRTTASTYSLLAVVLYHTGDFNQVRQSSVVFQCQLGDSKSSI 207 (222)
Q Consensus 128 a~~lle~g~~~l~qG~~e~A~~L~~eAL~i~eqV~G~~HpevA~~y~~LA~vy~~~Gd~~eAi~~~~~~~~~~~~~~~a~ 207 (222)
++++++....+..+|++++|.+++.++|.++++++|+.||+++.++++||.+|..+|++++|+ .++ ++|+
T Consensus 287 ~~~ll~~ie~~~~~g~~~~a~~~~~~~L~~~~~~lg~~h~~~~~~~~~L~~~y~~~g~~~eA~----~~~------~~~L 356 (429)
T 3qwp_A 287 VQESLKKIEELKAHWKWEQVLAMCQAIISSNSERLPDINIYQLKVLDCAMDACINLGLLEEAL----FYG------TRTM 356 (429)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHTCSSCCCCTTSHHHHHHHHHHHHHHHHHTCHHHHH----HHH------HHHH
T ss_pred HHHHHHHHHHHHhhccHHHHHHHHHHHHHhccCcCCccchHHHHHHHHHHHHHHhhccHHHHH----HHH------HHHH
Confidence 456666666677899999999999999999999999999999999999999999999999999 777 7888
Q ss_pred EEeeeech
Q 027539 208 IITSFCTE 215 (222)
Q Consensus 208 ~i~e~~~~ 215 (222)
.|++++.|
T Consensus 357 ~i~~~~lg 364 (429)
T 3qwp_A 357 EPYRIFFP 364 (429)
T ss_dssp HHHHHHSC
T ss_pred HhHHHHcC
Confidence 88877655
No 7
>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A
Probab=98.44 E-value=2.5e-07 Score=74.78 Aligned_cols=65 Identities=25% Similarity=0.266 Sum_probs=60.9
Q ss_pred hhHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHcCChhhHh
Q 027539 126 ADGRTLLESSKIALDKGKLEDAVNYGTKALARMIAVCGPYHRTTASTYSLLAVVLYHTGDFNQVR 190 (222)
Q Consensus 126 ~~a~~lle~g~~~l~qG~~e~A~~L~~eAL~i~eqV~G~~HpevA~~y~~LA~vy~~~Gd~~eAi 190 (222)
..+......|.++..+|++++|.++|.+++.++++..|+.||..+.++.+||.+|..+|++++|+
T Consensus 83 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~ 147 (283)
T 3edt_B 83 AVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKFHPDVAKQLNNLALLCQNQGKAEEVE 147 (283)
T ss_dssp HHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHH
T ss_pred HHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHcCCHHHHH
Confidence 34555667799999999999999999999999999999999999999999999999999999999
No 8
>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A
Probab=98.44 E-value=2.5e-07 Score=74.76 Aligned_cols=65 Identities=23% Similarity=0.210 Sum_probs=61.4
Q ss_pred hhHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHcCChhhHh
Q 027539 126 ADGRTLLESSKIALDKGKLEDAVNYGTKALARMIAVCGPYHRTTASTYSLLAVVLYHTGDFNQVR 190 (222)
Q Consensus 126 ~~a~~lle~g~~~l~qG~~e~A~~L~~eAL~i~eqV~G~~HpevA~~y~~LA~vy~~~Gd~~eAi 190 (222)
..+......|.++..+|++++|.+++.+++.+.++.+|+.+|..+.++.+||.+|..+|++++|+
T Consensus 41 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~ 105 (283)
T 3edt_B 41 DVATMLNILALVYRDQNKYKEAAHLLNDALAIREKTLGKDHPAVAATLNNLAVLYGKRGKYKEAE 105 (283)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHHHHHHHHHHHHHHHTTTCHHHHH
T ss_pred HHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHHHhccHHHHH
Confidence 45566777899999999999999999999999999999999999999999999999999999999
No 9
>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans}
Probab=98.42 E-value=1.8e-07 Score=70.74 Aligned_cols=56 Identities=16% Similarity=0.141 Sum_probs=50.1
Q ss_pred hHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHcCChhhHh
Q 027539 127 DGRTLLESSKIALDKGKLEDAVNYGTKALARMIAVCGPYHRTTASTYSLLAVVLYHTGDFNQVR 190 (222)
Q Consensus 127 ~a~~lle~g~~~l~qG~~e~A~~L~~eAL~i~eqV~G~~HpevA~~y~~LA~vy~~~Gd~~eAi 190 (222)
.|...-+.|..+..+|++++|++.|++|+.+ +|+-+.+|+++|.+|..+|++++|+
T Consensus 7 ~A~a~~~lG~~~~~~~~~~~A~~~y~~Al~~--------~p~~~~~~~nlg~~~~~~~~~~~A~ 62 (127)
T 4gcn_A 7 AAIAEKDLGNAAYKQKDFEKAHVHYDKAIEL--------DPSNITFYNNKAAVYFEEKKFAECV 62 (127)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--------CCCCHHHHHhHHHHHHHhhhHHHHH
Confidence 3444556799999999999999999999986 6788899999999999999999998
No 10
>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens}
Probab=98.31 E-value=3.1e-07 Score=81.31 Aligned_cols=57 Identities=23% Similarity=0.194 Sum_probs=54.1
Q ss_pred HHHHHHhcCChHHHHHHHHHHHHHHHHHhCC-CChHHHHHHHHHHHHHHHcCChhhHh
Q 027539 134 SSKIALDKGKLEDAVNYGTKALARMIAVCGP-YHRTTASTYSLLAVVLYHTGDFNQVR 190 (222)
Q Consensus 134 ~g~~~l~qG~~e~A~~L~~eAL~i~eqV~G~-~HpevA~~y~~LA~vy~~~Gd~~eAi 190 (222)
.|.++..+|++++|++.|.+|+.+..+..+. .||.++.+|++||.+|+.+|++++|+
T Consensus 57 Lg~~~~~~G~~~eAl~~~~kAl~~~~~~~~~~~~~~~~~~~~nla~~y~~~g~~~~A~ 114 (472)
T 4g1t_A 57 LAYLKHLKGQNEAALECLRKAEELIQQEHADQAEIRSLVTWGNYAWVYYHMGRLSDVQ 114 (472)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHHSGGGCTTTTHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHHHHcCChHHHH
Confidence 4999999999999999999999999998864 69999999999999999999999999
No 11
>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens}
Probab=98.26 E-value=6.1e-06 Score=67.79 Aligned_cols=77 Identities=22% Similarity=0.195 Sum_probs=67.3
Q ss_pred ccccccccccCc-hhHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHcCChhhHh
Q 027539 114 MVPVCKHVGCTS-ADGRTLLESSKIALDKGKLEDAVNYGTKALARMIAVCGPYHRTTASTYSLLAVVLYHTGDFNQVR 190 (222)
Q Consensus 114 i~PvVK~~~p~s-~~a~~lle~g~~~l~qG~~e~A~~L~~eAL~i~eqV~G~~HpevA~~y~~LA~vy~~~Gd~~eAi 190 (222)
..++.+...+.. ..++.+...|..+..+|++++|.+++.+++.+.++..|+.+|..+.++..+|.+|..+|++++|+
T Consensus 12 ~~~~~q~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~ 89 (311)
T 3nf1_A 12 ENLYFQGGGYEIPARLRTLHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKDAA 89 (311)
T ss_dssp GGGSCSSSCTTSCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred ccccccCCCCcchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHCCCHHHHH
Confidence 334444444444 45667788899999999999999999999999999999999999999999999999999999999
No 12
>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans}
Probab=98.21 E-value=5e-06 Score=62.66 Aligned_cols=68 Identities=12% Similarity=0.102 Sum_probs=59.3
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHcCChhhHhhchHHhhhhhCCCCceEE
Q 027539 130 TLLESSKIALDKGKLEDAVNYGTKALARMIAVCGPYHRTTASTYSLLAVVLYHTGDFNQVRQSSVVFQCQLGDSKSSII 208 (222)
Q Consensus 130 ~lle~g~~~l~qG~~e~A~~L~~eAL~i~eqV~G~~HpevA~~y~~LA~vy~~~Gd~~eAi~~~~~~~~~~~~~~~a~~ 208 (222)
-....|.++..+|++++|++.+.+|+.+..+ .+..|+..+.+|.++|.+|..+|++++|+ .++ ++|+.
T Consensus 44 ~~~nlg~~~~~~~~~~~A~~~~~~al~~~~~-~~~~~~~~a~~~~~lg~~~~~~~~~~~A~----~~~------~kal~ 111 (127)
T 4gcn_A 44 FYNNKAAVYFEEKKFAECVQFCEKAVEVGRE-TRADYKLIAKAMSRAGNAFQKQNDLSLAV----QWF------HRSLS 111 (127)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH-TTCCHHHHHHHHHHHHHHHHHTTCHHHHH----HHH------HHHHH
T ss_pred HHHhHHHHHHHhhhHHHHHHHHHHHHHhCcc-cchhhHHHHHHHHHHHHHHHHcCCHHHHH----HHH------HHHHh
Confidence 3556699999999999999999999998765 45678999999999999999999999999 666 56654
No 13
>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans}
Probab=98.19 E-value=1.8e-06 Score=65.29 Aligned_cols=57 Identities=19% Similarity=0.149 Sum_probs=50.6
Q ss_pred hhHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHcCChhhHh
Q 027539 126 ADGRTLLESSKIALDKGKLEDAVNYGTKALARMIAVCGPYHRTTASTYSLLAVVLYHTGDFNQVR 190 (222)
Q Consensus 126 ~~a~~lle~g~~~l~qG~~e~A~~L~~eAL~i~eqV~G~~HpevA~~y~~LA~vy~~~Gd~~eAi 190 (222)
..|+...+.|..+..+|++++|++.|++|+.+ .|+-+.+|.++|.+|..+|++++|+
T Consensus 11 ~~a~~~~~~G~~~~~~g~~~~A~~~~~~al~~--------~p~~~~~~~~~~~~~~~~~~~~~A~ 67 (126)
T 4gco_A 11 ELAQEEKNKGNEYFKKGDYPTAMRHYNEAVKR--------DPENAILYSNRAACLTKLMEFQRAL 67 (126)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--------CCCCHHHHHHHhhHHHhhccHHHHH
Confidence 35667778899999999999999999999975 5666788999999999999999999
No 14
>2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae}
Probab=98.18 E-value=2.3e-06 Score=60.56 Aligned_cols=56 Identities=18% Similarity=0.226 Sum_probs=50.3
Q ss_pred hHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHcCChhhHh
Q 027539 127 DGRTLLESSKIALDKGKLEDAVNYGTKALARMIAVCGPYHRTTASTYSLLAVVLYHTGDFNQVR 190 (222)
Q Consensus 127 ~a~~lle~g~~~l~qG~~e~A~~L~~eAL~i~eqV~G~~HpevA~~y~~LA~vy~~~Gd~~eAi 190 (222)
.+...+..|..+..+|++++|++.|.+|+.+ +|+-+..+.++|.+|..+|++++|+
T Consensus 3 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~--------~p~~~~~~~~lg~~~~~~g~~~~A~ 58 (111)
T 2l6j_A 3 QFEKQKEQGNSLFKQGLYREAVHCYDQLITA--------QPQNPVGYSNKAMALIKLGEYTQAI 58 (111)
T ss_dssp HHHHHHHHHHHHHTTTCHHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHTTCHHHHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc--------CCCCHHHHHHHHHHHHHhcCHHHHH
Confidence 4667788899999999999999999999986 4555678999999999999999999
No 15
>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens}
Probab=98.16 E-value=2.5e-06 Score=70.11 Aligned_cols=64 Identities=23% Similarity=0.255 Sum_probs=60.3
Q ss_pred hHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHcCChhhHh
Q 027539 127 DGRTLLESSKIALDKGKLEDAVNYGTKALARMIAVCGPYHRTTASTYSLLAVVLYHTGDFNQVR 190 (222)
Q Consensus 127 ~a~~lle~g~~~l~qG~~e~A~~L~~eAL~i~eqV~G~~HpevA~~y~~LA~vy~~~Gd~~eAi 190 (222)
.+.-....|.++...|++++|.+++.+++.+.++..|+.+|..+.++.++|.+|..+|++++|+
T Consensus 110 ~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~ 173 (311)
T 3nf1_A 110 VAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKDHPDVAKQLNNLALLCQNQGKYEEVE 173 (311)
T ss_dssp HHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHH
T ss_pred HHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCCHHHHH
Confidence 4555667799999999999999999999999999999999999999999999999999999999
No 16
>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae}
Probab=98.14 E-value=3e-06 Score=62.27 Aligned_cols=57 Identities=21% Similarity=0.126 Sum_probs=48.6
Q ss_pred hhHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHcCChhhHh
Q 027539 126 ADGRTLLESSKIALDKGKLEDAVNYGTKALARMIAVCGPYHRTTASTYSLLAVVLYHTGDFNQVR 190 (222)
Q Consensus 126 ~~a~~lle~g~~~l~qG~~e~A~~L~~eAL~i~eqV~G~~HpevA~~y~~LA~vy~~~Gd~~eAi 190 (222)
..+..+.+.|..+..+|++++|++.|.+++.+ .|+-+.++.++|.+|..+|++++|+
T Consensus 2 ~~a~~~~~~g~~~~~~~~~~~A~~~~~~al~~--------~p~~~~~~~~~a~~~~~~~~~~~A~ 58 (126)
T 3upv_A 2 MKAEEARLEGKEYFTKSDWPNAVKAYTEMIKR--------APEDARGYSNRAAALAKLMSFPEAI 58 (126)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHTTCHHHHH
T ss_pred chHHHHHHHHHHHHHhcCHHHHHHHHHHHHHh--------CCCChHHHHHHHHHHHHhcCHHHHH
Confidence 45777888899999999999999999999876 4556688899999999999999888
No 17
>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans}
Probab=98.13 E-value=3.5e-06 Score=64.91 Aligned_cols=66 Identities=14% Similarity=0.183 Sum_probs=58.4
Q ss_pred chhHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHhCCC----------ChHHHHHHHHHHHHHHHcCChhhHh
Q 027539 125 SADGRTLLESSKIALDKGKLEDAVNYGTKALARMIAVCGPY----------HRTTASTYSLLAVVLYHTGDFNQVR 190 (222)
Q Consensus 125 s~~a~~lle~g~~~l~qG~~e~A~~L~~eAL~i~eqV~G~~----------HpevA~~y~~LA~vy~~~Gd~~eAi 190 (222)
...+..+.+.|..+..+|++++|+..|.+|+.+........ .|..+.+|.++|.+|..+|++++|+
T Consensus 8 ~~~a~~~~~~G~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~A~ 83 (162)
T 3rkv_A 8 LKSVEALRQKGNELFVQKDYKEAIDAYRDALTRLDTLILREKPGEPEWVELDRKNIPLYANMSQCYLNIGDLHEAE 83 (162)
T ss_dssp CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSCTTSHHHHHHHHTHHHHHHHHHHHHHHHTCHHHHH
T ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHH
Confidence 35678899999999999999999999999999988765422 5677899999999999999999999
No 18
>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A
Probab=98.07 E-value=3.8e-06 Score=60.59 Aligned_cols=64 Identities=11% Similarity=0.011 Sum_probs=53.3
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHcCChhhHhhchHHhhhhhCCCCceEE
Q 027539 129 RTLLESSKIALDKGKLEDAVNYGTKALARMIAVCGPYHRTTASTYSLLAVVLYHTGDFNQVRQSSVVFQCQLGDSKSSII 208 (222)
Q Consensus 129 ~~lle~g~~~l~qG~~e~A~~L~~eAL~i~eqV~G~~HpevA~~y~~LA~vy~~~Gd~~eAi~~~~~~~~~~~~~~~a~~ 208 (222)
.-.+..|.++..+|++++|++.|.+++.+ .|+....|.+||.+|..+|++++|+ .++ ++|+.
T Consensus 8 ~~~~~lg~~~~~~g~~~~A~~~~~~al~~--------~p~~~~a~~~lg~~~~~~g~~~~A~----~~~------~~al~ 69 (100)
T 3ma5_A 8 FTRYALAQEHLKHDNASRALALFEELVET--------DPDYVGTYYHLGKLYERLDRTDDAI----DTY------AQGIE 69 (100)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------STTCTHHHHHHHHHHHHTTCHHHHH----HHH------HHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHh--------CCCcHHHHHHHHHHHHHcCCHHHHH----HHH------HHHHh
Confidence 34566799999999999999999999986 4555668999999999999999999 666 56655
Q ss_pred Ee
Q 027539 209 IT 210 (222)
Q Consensus 209 i~ 210 (222)
+.
T Consensus 70 l~ 71 (100)
T 3ma5_A 70 VA 71 (100)
T ss_dssp HH
T ss_pred hh
Confidence 43
No 19
>3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A
Probab=98.04 E-value=6.7e-06 Score=69.59 Aligned_cols=63 Identities=13% Similarity=0.091 Sum_probs=56.7
Q ss_pred hHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHcCChhhHh
Q 027539 127 DGRTLLESSKIALDKGKLEDAVNYGTKALARMIAVCGPYHRTTASTYSLLAVVLYHTGDFNQVR 190 (222)
Q Consensus 127 ~a~~lle~g~~~l~qG~~e~A~~L~~eAL~i~eqV~G~~HpevA~~y~~LA~vy~~~Gd~~eAi 190 (222)
.+.-+...|.++..+|++++|+++|.+|+.++++.- ..++..+.+|.++|.+|..+|++++|+
T Consensus 154 ~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~-~~~~~~~~~~~nlg~~y~~~~~y~~A~ 216 (293)
T 3u3w_A 154 NLYIENAIANIYAENGYLKKGIDLFEQILKQLEALH-DNEEFDVKVRYNHAKALYLDSRYEESL 216 (293)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSS-CCHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcc-cchhHHHHHHHHHHHHHHHHhHHHHHH
Confidence 344566679999999999999999999999988763 489999999999999999999999999
No 20
>3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A
Probab=98.03 E-value=5.6e-06 Score=64.25 Aligned_cols=62 Identities=10% Similarity=0.086 Sum_probs=53.6
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHcCChhhHhhchHHhhhhhCCCCceEEEe
Q 027539 131 LLESSKIALDKGKLEDAVNYGTKALARMIAVCGPYHRTTASTYSLLAVVLYHTGDFNQVRQSSVVFQCQLGDSKSSIIIT 210 (222)
Q Consensus 131 lle~g~~~l~qG~~e~A~~L~~eAL~i~eqV~G~~HpevA~~y~~LA~vy~~~Gd~~eAi~~~~~~~~~~~~~~~a~~i~ 210 (222)
....|.++..+|++++|++.|.+++.+ +|+.+.++.+||.+|..+|++++|+ .++ ++|+.+.
T Consensus 110 ~~~lg~~~~~~g~~~~A~~~~~~~l~~--------~p~~~~~~~~lg~~~~~~g~~~~A~----~~~------~~al~~~ 171 (184)
T 3vtx_A 110 YYKLGLVYDSMGEHDKAIEAYEKTISI--------KPGFIRAYQSIGLAYEGKGLRDEAV----KYF------KKALEKE 171 (184)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHTTCHHHHH----HHH------HHHHHTT
T ss_pred HHHHHHHHHHhCCchhHHHHHHHHHHh--------cchhhhHHHHHHHHHHHCCCHHHHH----HHH------HHHHhCC
Confidence 455699999999999999999999986 6777889999999999999999999 666 5676553
No 21
>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1
Probab=98.00 E-value=9.8e-06 Score=60.66 Aligned_cols=52 Identities=10% Similarity=0.003 Sum_probs=38.8
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHcCChhhHh
Q 027539 131 LLESSKIALDKGKLEDAVNYGTKALARMIAVCGPYHRTTASTYSLLAVVLYHTGDFNQVR 190 (222)
Q Consensus 131 lle~g~~~l~qG~~e~A~~L~~eAL~i~eqV~G~~HpevA~~y~~LA~vy~~~Gd~~eAi 190 (222)
.++.|..++.+|++++|+..|.+++.+ .|+-+..+..||.++..+|++++|+
T Consensus 20 ~~~~g~~~~~~g~~~~A~~~~~~al~~--------~P~~~~a~~~lg~~~~~~g~~~~A~ 71 (121)
T 1hxi_A 20 PMEEGLSMLKLANLAEAALAFEAVCQK--------EPEREEAWRSLGLTQAENEKDGLAI 71 (121)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHH--------STTCHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHH--------CCCCHHHHHHHHHHHHHcCCHHHHH
Confidence 466677788888888888888877764 4555667777777777777777777
No 22
>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus}
Probab=97.95 E-value=1.2e-05 Score=59.03 Aligned_cols=73 Identities=15% Similarity=0.111 Sum_probs=61.1
Q ss_pred hHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHcCChhhHhhchHHhhhhhCCCCce
Q 027539 127 DGRTLLESSKIALDKGKLEDAVNYGTKALARMIAVCGPYHRTTASTYSLLAVVLYHTGDFNQVRQSSVVFQCQLGDSKSS 206 (222)
Q Consensus 127 ~a~~lle~g~~~l~qG~~e~A~~L~~eAL~i~eqV~G~~HpevA~~y~~LA~vy~~~Gd~~eAi~~~~~~~~~~~~~~~a 206 (222)
.+.-....|.++..+|++++|.+++.+++.+.++.- .++..+.++.+||.+|..+|++++|+ .+. ++|
T Consensus 88 ~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~--~~~~~~~~~~~la~~~~~~g~~~~A~----~~~------~~a 155 (164)
T 3ro3_A 88 EAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELK--DRIGEGRACWSLGNAYTALGNHDQAM----HFA------EKH 155 (164)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTT--CHHHHHHHHHHHHHHHHHHTCHHHHH----HHH------HHH
T ss_pred HHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHcc--chHhHHHHHHHHHHHHHHccCHHHHH----HHH------HHH
Confidence 355566779999999999999999999999988753 47889999999999999999999999 666 556
Q ss_pred EEEee
Q 027539 207 IIITS 211 (222)
Q Consensus 207 ~~i~e 211 (222)
+.+.+
T Consensus 156 ~~~~~ 160 (164)
T 3ro3_A 156 LEISR 160 (164)
T ss_dssp HHHHT
T ss_pred HHHHH
Confidence 55443
No 23
>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus}
Probab=97.95 E-value=1.3e-05 Score=61.69 Aligned_cols=59 Identities=15% Similarity=0.185 Sum_probs=48.7
Q ss_pred CchhHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHcCChhhHh
Q 027539 124 TSADGRTLLESSKIALDKGKLEDAVNYGTKALARMIAVCGPYHRTTASTYSLLAVVLYHTGDFNQVR 190 (222)
Q Consensus 124 ~s~~a~~lle~g~~~l~qG~~e~A~~L~~eAL~i~eqV~G~~HpevA~~y~~LA~vy~~~Gd~~eAi 190 (222)
....+..++..|..+..+|++++|++.|.+++.+ .|+.+.+|.++|.+|+.+|++++|+
T Consensus 7 ~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~--------~p~~~~~~~~l~~~~~~~g~~~~A~ 65 (164)
T 3sz7_A 7 PTPESDKLKSEGNAAMARKEYSKAIDLYTQALSI--------APANPIYLSNRAAAYSASGQHEKAA 65 (164)
T ss_dssp CCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------STTCHHHHHHHHHHHHHTTCHHHHH
T ss_pred hhhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--------CCcCHHHHHHHHHHHHHccCHHHHH
Confidence 4567778888899999999999999999988876 3555778888888888888888888
No 24
>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A
Probab=97.94 E-value=1.1e-05 Score=63.66 Aligned_cols=57 Identities=14% Similarity=0.025 Sum_probs=47.8
Q ss_pred hhHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHcCChhhHh
Q 027539 126 ADGRTLLESSKIALDKGKLEDAVNYGTKALARMIAVCGPYHRTTASTYSLLAVVLYHTGDFNQVR 190 (222)
Q Consensus 126 ~~a~~lle~g~~~l~qG~~e~A~~L~~eAL~i~eqV~G~~HpevA~~y~~LA~vy~~~Gd~~eAi 190 (222)
.++...+..|..+..+|++++|.+.|.+++.+ .|+-+..+.+||.+|..+|++++|+
T Consensus 34 ~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~--------~P~~~~~~~~lg~~~~~~g~~~~Ai 90 (151)
T 3gyz_A 34 DMMDDIYSYAYDFYNKGRIEEAEVFFRFLCIY--------DFYNVDYIMGLAAIYQIKEQFQQAA 90 (151)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--------CCCCHHHHHHHHHHHHHHccHHHHH
Confidence 44556777899999999999999999999876 4555667889999999999999998
No 25
>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans}
Probab=97.94 E-value=1.1e-05 Score=60.84 Aligned_cols=63 Identities=6% Similarity=0.033 Sum_probs=53.4
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHcCChhhHhhchHHhhhhhCCCCceEE
Q 027539 129 RTLLESSKIALDKGKLEDAVNYGTKALARMIAVCGPYHRTTASTYSLLAVVLYHTGDFNQVRQSSVVFQCQLGDSKSSII 208 (222)
Q Consensus 129 ~~lle~g~~~l~qG~~e~A~~L~~eAL~i~eqV~G~~HpevA~~y~~LA~vy~~~Gd~~eAi~~~~~~~~~~~~~~~a~~ 208 (222)
.-.+..|.++...|++++|++.|.+|+.+ .|+-+.+|.++|.+|..+|++++|+ .++ ++|+.
T Consensus 48 ~~~~~~~~~~~~~~~~~~A~~~~~~al~~--------~p~~~~a~~~lg~~~~~~~~~~~A~----~~~------~~al~ 109 (126)
T 4gco_A 48 ILYSNRAACLTKLMEFQRALDDCDTCIRL--------DSKFIKGYIRKAACLVAMREWSKAQ----RAY------EDALQ 109 (126)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHTTCHHHHH----HHH------HHHHH
T ss_pred HHHHHHhhHHHhhccHHHHHHHHHHHHHh--------hhhhhHHHHHHHHHHHHCCCHHHHH----HHH------HHHHH
Confidence 34556699999999999999999999986 5666778999999999999999999 666 56665
Q ss_pred E
Q 027539 209 I 209 (222)
Q Consensus 209 i 209 (222)
+
T Consensus 110 l 110 (126)
T 4gco_A 110 V 110 (126)
T ss_dssp H
T ss_pred H
Confidence 4
No 26
>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A
Probab=97.92 E-value=2.4e-05 Score=53.28 Aligned_cols=56 Identities=20% Similarity=0.371 Sum_probs=49.6
Q ss_pred hHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHcCChhhHh
Q 027539 127 DGRTLLESSKIALDKGKLEDAVNYGTKALARMIAVCGPYHRTTASTYSLLAVVLYHTGDFNQVR 190 (222)
Q Consensus 127 ~a~~lle~g~~~l~qG~~e~A~~L~~eAL~i~eqV~G~~HpevA~~y~~LA~vy~~~Gd~~eAi 190 (222)
.+...+..|..+..+|++++|.+.|.+++.+ +|+....+.++|.+|..+|++++|+
T Consensus 8 ~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~--------~~~~~~~~~~l~~~~~~~~~~~~A~ 63 (91)
T 1na3_A 8 SAEAWYNLGNAYYKQGDYDEAIEYYQKALEL--------DPNNAEAWYNLGNAYYKQGDYDEAI 63 (91)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHTTCHHHHH
T ss_pred cHHHHHHHHHHHHHccCHHHHHHHHHHHHhc--------CCCCHHHHHHHHHHHHHHhhHHHHH
Confidence 4566777899999999999999999999975 4555678999999999999999999
No 27
>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus}
Probab=97.91 E-value=3.7e-05 Score=56.30 Aligned_cols=61 Identities=15% Similarity=0.073 Sum_probs=54.7
Q ss_pred HHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHcCChhhHh
Q 027539 128 GRTLLESSKIALDKGKLEDAVNYGTKALARMIAVCGPYHRTTASTYSLLAVVLYHTGDFNQVR 190 (222)
Q Consensus 128 a~~lle~g~~~l~qG~~e~A~~L~~eAL~i~eqV~G~~HpevA~~y~~LA~vy~~~Gd~~eAi 190 (222)
+.-....|.++..+|++++|.+++.+++.+..+. ..++..+.++.++|.+|..+|++++|+
T Consensus 49 ~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~--~~~~~~~~~~~~l~~~~~~~~~~~~A~ 109 (164)
T 3ro3_A 49 RIAYSNLGNAYIFLGEFETASEYYKKTLLLARQL--KDRAVEAQSCYSLGNTYTLLQDYEKAI 109 (164)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHh--CCcHHHHHHHHHHHHHHHHHhhHHHHH
Confidence 4566777999999999999999999999999876 456778999999999999999999999
No 28
>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis}
Probab=97.90 E-value=1.1e-05 Score=70.27 Aligned_cols=63 Identities=14% Similarity=-0.017 Sum_probs=57.1
Q ss_pred hhHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHcCChhhHh
Q 027539 126 ADGRTLLESSKIALDKGKLEDAVNYGTKALARMIAVCGPYHRTTASTYSLLAVVLYHTGDFNQVR 190 (222)
Q Consensus 126 ~~a~~lle~g~~~l~qG~~e~A~~L~~eAL~i~eqV~G~~HpevA~~y~~LA~vy~~~Gd~~eAi 190 (222)
..+.-....|.++..+|++++|.+.|.+|+.+..+. ..++..+.++.+||.+|..+|++++|+
T Consensus 182 ~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~--~~~~~~~~~~~~lg~~y~~~g~~~~A~ 244 (383)
T 3ulq_A 182 RLLQCHSLFATNFLDLKQYEDAISHFQKAYSMAEAE--KQPQLMGRTLYNIGLCKNSQSQYEDAI 244 (383)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHc--CChHHHHHHHHHHHHHHHHCCCHHHHH
Confidence 345566777999999999999999999999999987 678999999999999999999999999
No 29
>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B*
Probab=97.89 E-value=2.2e-05 Score=57.57 Aligned_cols=59 Identities=19% Similarity=0.143 Sum_probs=45.2
Q ss_pred CchhHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHcCChhhHh
Q 027539 124 TSADGRTLLESSKIALDKGKLEDAVNYGTKALARMIAVCGPYHRTTASTYSLLAVVLYHTGDFNQVR 190 (222)
Q Consensus 124 ~s~~a~~lle~g~~~l~qG~~e~A~~L~~eAL~i~eqV~G~~HpevA~~y~~LA~vy~~~Gd~~eAi 190 (222)
....+...+..|..+..+|++++|.+.|.+++.+ .|+.+.++.++|.+|..+|++++|+
T Consensus 5 ~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~--------~~~~~~~~~~l~~~~~~~~~~~~A~ 63 (137)
T 3q49_B 5 KSPSAQELKEQGNRLFVGRKYPEAAACYGRAITR--------NPLVAVYYTNRALCYLKMQQPEQAL 63 (137)
T ss_dssp -CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHTTCHHHHH
T ss_pred ccccHHHHHHHHHHHHHhCcHHHHHHHHHHHHhh--------CcCcHHHHHHHHHHHHHhcCHHHHH
Confidence 3445667777888888888888888888888875 3555667888888888888888887
No 30
>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=97.88 E-value=3e-05 Score=57.00 Aligned_cols=64 Identities=14% Similarity=0.065 Sum_probs=55.2
Q ss_pred ccCchhHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHcCChhhHh
Q 027539 122 GCTSADGRTLLESSKIALDKGKLEDAVNYGTKALARMIAVCGPYHRTTASTYSLLAVVLYHTGDFNQVR 190 (222)
Q Consensus 122 ~p~s~~a~~lle~g~~~l~qG~~e~A~~L~~eAL~i~eqV~G~~HpevA~~y~~LA~vy~~~Gd~~eAi 190 (222)
......+...+..|..+..+|++++|.++|.+++.+ .|.+++.+.++.++|.+|..+|++++|+
T Consensus 22 ~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~-----~~~~~~~~~~~~~~a~~~~~~~~~~~A~ 85 (148)
T 2dba_A 22 TPGASSVEQLRKEGNELFKCGDYGGALAAYTQALGL-----DATPQDQAVLHRNRAACHLKLEDYDKAE 85 (148)
T ss_dssp CTTCCCHHHHHHHHHHHHTTTCHHHHHHHHHHHHTS-----CCCHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred ccchHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHH-----cccchHHHHHHHHHHHHHHHHccHHHHH
Confidence 334556788888999999999999999999999874 4666777999999999999999999998
No 31
>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis}
Probab=97.87 E-value=1.7e-05 Score=69.04 Aligned_cols=64 Identities=11% Similarity=0.081 Sum_probs=58.9
Q ss_pred hhHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHcCChhhHh
Q 027539 126 ADGRTLLESSKIALDKGKLEDAVNYGTKALARMIAVCGPYHRTTASTYSLLAVVLYHTGDFNQVR 190 (222)
Q Consensus 126 ~~a~~lle~g~~~l~qG~~e~A~~L~~eAL~i~eqV~G~~HpevA~~y~~LA~vy~~~Gd~~eAi 190 (222)
..+.-....|.++...|++++|++.+.+|+.++.+. |..++..+.++++||.+|..+|++++|+
T Consensus 141 ~~a~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~-~~~~~~~~~~~~~lg~~~~~~g~~~~A~ 204 (383)
T 3ulq_A 141 EKAEFFFKMSESYYYMKQTYFSMDYARQAYEIYKEH-EAYNIRLLQCHSLFATNFLDLKQYEDAI 204 (383)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTC-STTHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhC-ccchHHHHHHHHHHHHHHHHhcCHHHHH
Confidence 456777888999999999999999999999999986 5568999999999999999999999999
No 32
>4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A*
Probab=97.86 E-value=1.3e-05 Score=61.88 Aligned_cols=53 Identities=8% Similarity=0.048 Sum_probs=48.1
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHcCChhhHh
Q 027539 130 TLLESSKIALDKGKLEDAVNYGTKALARMIAVCGPYHRTTASTYSLLAVVLYHTGDFNQVR 190 (222)
Q Consensus 130 ~lle~g~~~l~qG~~e~A~~L~~eAL~i~eqV~G~~HpevA~~y~~LA~vy~~~Gd~~eAi 190 (222)
..+..|+++..+|++++|.+.|++++.+ +|+-+.++.+||.+|..+|++++|+
T Consensus 33 ~~~~la~~y~~~~~~~~A~~~~~~al~~--------~p~~~~a~~~lg~~~~~~~~~~~A~ 85 (150)
T 4ga2_A 33 KGFYFAKLYYEAKEYDLAKKYICTYINV--------QERDPKAHRFLGLLYELEENTDKAV 85 (150)
T ss_dssp THHHHHHHHHHTTCHHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHh--------CCCCHHHHHHHHHHHHHcCchHHHH
Confidence 3466799999999999999999999986 5777789999999999999999999
No 33
>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans}
Probab=97.86 E-value=2.5e-05 Score=57.18 Aligned_cols=56 Identities=16% Similarity=0.156 Sum_probs=49.3
Q ss_pred hHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHcCChhhHh
Q 027539 127 DGRTLLESSKIALDKGKLEDAVNYGTKALARMIAVCGPYHRTTASTYSLLAVVLYHTGDFNQVR 190 (222)
Q Consensus 127 ~a~~lle~g~~~l~qG~~e~A~~L~~eAL~i~eqV~G~~HpevA~~y~~LA~vy~~~Gd~~eAi 190 (222)
.+.-.+..|.++..+|++++|++.|.+++.+ +|+-...+.+||.+|..+|++++|+
T Consensus 26 ~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~--------~p~~~~~~~~l~~~~~~~g~~~~A~ 81 (117)
T 3k9i_A 26 LAECYLGLGSTFRTLGEYRKAEAVLANGVKQ--------FPNHQALRVFYAMVLYNLGRYEQGV 81 (117)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHHTCHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--------CCCchHHHHHHHHHHHHcCCHHHHH
Confidence 3445666799999999999999999999987 5556788999999999999999999
No 34
>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1}
Probab=97.86 E-value=3e-05 Score=60.23 Aligned_cols=64 Identities=17% Similarity=0.134 Sum_probs=56.7
Q ss_pred hhHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHcCChhhHh
Q 027539 126 ADGRTLLESSKIALDKGKLEDAVNYGTKALARMIAVCGPYHRTTASTYSLLAVVLYHTGDFNQVR 190 (222)
Q Consensus 126 ~~a~~lle~g~~~l~qG~~e~A~~L~~eAL~i~eqV~G~~HpevA~~y~~LA~vy~~~Gd~~eAi 190 (222)
..+.-....|.++..+|++++|.+++.+|+.+.++ .|..++..+.++.+||.+|..+|++++|+
T Consensus 64 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~-~~~~~~~~~~~~~~lg~~~~~~g~~~~A~ 127 (203)
T 3gw4_A 64 AEHRALHQVGMVERMAGNWDAARRCFLEERELLAS-LPEDPLAASANAYEVATVALHFGDLAGAR 127 (203)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH-SCCCHHHHHHHHHHHHHHHHHHTCHHHHH
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHH-cCccHHHHHHHHHHHHHHHHHhCCHHHHH
Confidence 44566777899999999999999999999999984 55556689999999999999999999998
No 35
>2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646}
Probab=97.86 E-value=2.3e-05 Score=66.23 Aligned_cols=62 Identities=13% Similarity=0.094 Sum_probs=53.7
Q ss_pred hHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHhCCCChHHH-HHHHHHHHHHHHcCChhhHh
Q 027539 127 DGRTLLESSKIALDKGKLEDAVNYGTKALARMIAVCGPYHRTTA-STYSLLAVVLYHTGDFNQVR 190 (222)
Q Consensus 127 ~a~~lle~g~~~l~qG~~e~A~~L~~eAL~i~eqV~G~~HpevA-~~y~~LA~vy~~~Gd~~eAi 190 (222)
.+.-....|.++..+|++++|.++|.+|+.+.+...+. +... .+|+++|.+|..+|++++|+
T Consensus 154 ~~~~~~~lg~~y~~~~~~~~A~~~~~kal~~~~~~~~~--~~~~~~~~~nlg~~y~~~~~y~~Al 216 (293)
T 2qfc_A 154 NLYIENAIANIYAENGYLKKGIDLFEQILKQLEALHDN--EEFDVKVRYNHAKALYLDSRYEESL 216 (293)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCC--HHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCcc--ccchHHHHHhHHHHHHHHhhHHHHH
Confidence 45566777999999999999999999999999876543 4433 89999999999999999999
No 36
>2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8
Probab=97.83 E-value=3.5e-05 Score=62.78 Aligned_cols=73 Identities=14% Similarity=0.057 Sum_probs=63.7
Q ss_pred hHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHhCCCChHHHHHH----HHHHHHHHHcCChhhHhhchHHhhhhhCC
Q 027539 127 DGRTLLESSKIALDKGKLEDAVNYGTKALARMIAVCGPYHRTTASTY----SLLAVVLYHTGDFNQVRQSSVVFQCQLGD 202 (222)
Q Consensus 127 ~a~~lle~g~~~l~qG~~e~A~~L~~eAL~i~eqV~G~~HpevA~~y----~~LA~vy~~~Gd~~eAi~~~~~~~~~~~~ 202 (222)
++.-..+.|.++...|++++|++.|.+||.+|.+ -|.++|+-+..| +++|.++..+|++++|+ ..+
T Consensus 56 ~a~a~~n~g~al~~Lgr~~eAl~~~~kAL~l~n~-~~e~~pd~~~A~~~~~~~rG~aL~~lgr~eEAl----~~y----- 125 (159)
T 2hr2_A 56 DAFCHAGLAEALAGLRSFDEALHSADKALHYFNR-RGELNQDEGKLWISAVYSRALALDGLGRGAEAM----PEF----- 125 (159)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH-HCCTTSTHHHHHHHHHHHHHHHHHHTTCHHHHH----HHH-----
T ss_pred hHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhhc-cccCCCchHHHHHHHHHhHHHHHHHCCCHHHHH----HHH-----
Confidence 4446677899999999999999999999998554 579999999999 99999999999999999 777
Q ss_pred CCceEEEe
Q 027539 203 SKSSIIIT 210 (222)
Q Consensus 203 ~~~a~~i~ 210 (222)
++|+.+.
T Consensus 126 -~kAlel~ 132 (159)
T 2hr2_A 126 -KKVVEMI 132 (159)
T ss_dssp -HHHHHHH
T ss_pred -HHHHhcC
Confidence 6777653
No 37
>1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=97.83 E-value=2.9e-05 Score=66.03 Aligned_cols=61 Identities=16% Similarity=0.023 Sum_probs=52.4
Q ss_pred HHHHHH-HHHHHHhcCChHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHcCChhhHh
Q 027539 128 GRTLLE-SSKIALDKGKLEDAVNYGTKALARMIAVCGPYHRTTASTYSLLAVVLYHTGDFNQVR 190 (222)
Q Consensus 128 a~~lle-~g~~~l~qG~~e~A~~L~~eAL~i~eqV~G~~HpevA~~y~~LA~vy~~~Gd~~eAi 190 (222)
|-+.++ +|.++..+|++++|.+.|.+|+.++.+. | .+++.+.+|+++|.+|..+|++++|+
T Consensus 36 A~~~~~~a~~~~~~~g~~~~A~~~~~~al~~~~~~-~-~~~~~a~~~~~lg~~~~~~g~~~~A~ 97 (292)
T 1qqe_A 36 AADLCVQAATIYRLRKELNLAGDSFLKAADYQKKA-G-NEDEAGNTYVEAYKCFKSGGNSVNAV 97 (292)
T ss_dssp HHHHHHHHHHHHHHTTCTHHHHHHHHHHHHHHHHT-T-CHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHh-C-CHHHHHHHHHHHHHHHHHCCCHHHHH
Confidence 334444 4678999999999999999999999875 3 46788999999999999999999998
No 38
>2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A
Probab=97.82 E-value=2.9e-05 Score=57.05 Aligned_cols=66 Identities=15% Similarity=0.189 Sum_probs=55.2
Q ss_pred hHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHcCChhhHhhchHHhh
Q 027539 127 DGRTLLESSKIALDKGKLEDAVNYGTKALARMIAVCGPYHRTTASTYSLLAVVLYHTGDFNQVRQSSVVFQ 197 (222)
Q Consensus 127 ~a~~lle~g~~~l~qG~~e~A~~L~~eAL~i~eqV~G~~HpevA~~y~~LA~vy~~~Gd~~eAi~~~~~~~ 197 (222)
.+.+.++.|+.+..+|+++.|..-|.+|+.....-.. .-+.-+.+|.+||.+|+++|++++|+ .+.
T Consensus 4 sa~dc~~lG~~~~~~~~y~~A~~W~~~Al~~~~~~~~-~~~~~~~i~~~L~~~~~~~g~~~~A~----~~~ 69 (104)
T 2v5f_A 4 TAEDCFELGKVAYTEADYYHTELWMEQALRQLDEGEI-STIDKVSVLDYLSYAVYQQGDLDKAL----LLT 69 (104)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCC-CSSCHHHHHHHHHHHHHHTTCHHHHH----HHH
T ss_pred CHHHHHHHHHHHHHccchHHHHHHHHHHHHhhhccCC-CcccHHHHHHHHHHHHHHccCHHHHH----HHH
Confidence 5678899999999999999999999999988753321 12356688999999999999999999 555
No 39
>2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646}
Probab=97.82 E-value=2e-05 Score=66.66 Aligned_cols=71 Identities=10% Similarity=-0.056 Sum_probs=60.2
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHcCChhhH-hhchHHhhhhhCCCCceE
Q 027539 129 RTLLESSKIALDKGKLEDAVNYGTKALARMIAVCGPYHRTTASTYSLLAVVLYHTGDFNQV-RQSSVVFQCQLGDSKSSI 207 (222)
Q Consensus 129 ~~lle~g~~~l~qG~~e~A~~L~~eAL~i~eqV~G~~HpevA~~y~~LA~vy~~~Gd~~eA-i~~~~~~~~~~~~~~~a~ 207 (222)
.-.++.|.++..+|++++|++++.+|+.+..+ ...+...+.+|.++|.+|..+|++++| . .++ ++|+
T Consensus 197 ~~~~nlg~~y~~~~~y~~Al~~~~kal~~~~~--~~~~~~~~~~~~~lg~~y~~~g~~~~Ai~----~~~------~~Al 264 (293)
T 2qfc_A 197 KVRYNHAKALYLDSRYEESLYQVNKAIEISCR--INSMALIGQLYYQRGECLRKLEYEEAEIE----DAY------KKAS 264 (293)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH--TTBCSSHHHHHHHHHHHHHHTTCCHHHHH----HHH------HHHH
T ss_pred HHHHhHHHHHHHHhhHHHHHHHHHHHHHHHHh--cCcHHHHHHHHHHHHHHHHHcCCcHHHHH----HHH------HHHH
Confidence 56777899999999999999999999999854 556778899999999999999999999 6 545 4666
Q ss_pred EEee
Q 027539 208 IITS 211 (222)
Q Consensus 208 ~i~e 211 (222)
.+.+
T Consensus 265 ~~~~ 268 (293)
T 2qfc_A 265 FFFD 268 (293)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 5543
No 40
>2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis}
Probab=97.82 E-value=2.2e-05 Score=55.04 Aligned_cols=52 Identities=19% Similarity=0.310 Sum_probs=46.4
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHHHHHHHhCCCChHHHH-HHHHHHHHHHHcCChhhHh
Q 027539 131 LLESSKIALDKGKLEDAVNYGTKALARMIAVCGPYHRTTAS-TYSLLAVVLYHTGDFNQVR 190 (222)
Q Consensus 131 lle~g~~~l~qG~~e~A~~L~~eAL~i~eqV~G~~HpevA~-~y~~LA~vy~~~Gd~~eAi 190 (222)
.++.|..+..+|++++|++.|.+++.+ +|+-.. .+.++|.+|+.+|++++|+
T Consensus 3 ~~~~a~~~~~~~~~~~A~~~~~~al~~--------~p~~~~~~~~~lg~~~~~~~~~~~A~ 55 (99)
T 2kc7_A 3 QLKTIKELINQGDIENALQALEEFLQT--------EPVGKDEAYYLMGNAYRKLGDWQKAL 55 (99)
T ss_dssp THHHHHHHHHHTCHHHHHHHHHHHHHH--------CSSTHHHHHHHHHHHHHHHTCHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHH--------CCCcHHHHHHHHHHHHHHcCCHHHHH
Confidence 367899999999999999999999985 455566 8999999999999999999
No 41
>1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2
Probab=97.80 E-value=5.6e-05 Score=65.06 Aligned_cols=63 Identities=16% Similarity=0.110 Sum_probs=58.9
Q ss_pred HHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHcCChhhHh
Q 027539 128 GRTLLESSKIALDKGKLEDAVNYGTKALARMIAVCGPYHRTTASTYSLLAVVLYHTGDFNQVR 190 (222)
Q Consensus 128 a~~lle~g~~~l~qG~~e~A~~L~~eAL~i~eqV~G~~HpevA~~y~~LA~vy~~~Gd~~eAi 190 (222)
+.-....|.++..+|++++|.+++.+++.+..+.-|+.||..+.++.+||.+|+.+|++++|.
T Consensus 93 ~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~ 155 (373)
T 1hz4_A 93 LWSLIQQSEILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAE 155 (373)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHhcCHHHHH
Confidence 445667799999999999999999999999999999889999999999999999999999998
No 42
>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1}
Probab=97.78 E-value=4e-05 Score=59.51 Aligned_cols=63 Identities=8% Similarity=0.036 Sum_probs=57.0
Q ss_pred hhHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHcCChhhHh
Q 027539 126 ADGRTLLESSKIALDKGKLEDAVNYGTKALARMIAVCGPYHRTTASTYSLLAVVLYHTGDFNQVR 190 (222)
Q Consensus 126 ~~a~~lle~g~~~l~qG~~e~A~~L~~eAL~i~eqV~G~~HpevA~~y~~LA~vy~~~Gd~~eAi 190 (222)
..+.-....|.++..+|++++|.+++.+|+.+.++. ...|..+.++.++|.+|..+|++++|+
T Consensus 24 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~--~~~~~~~~~~~~l~~~~~~~g~~~~A~ 86 (203)
T 3gw4_A 24 TASGARFMLGYVYAFMDRFDEARASFQALQQQAQKS--GDHTAEHRALHQVGMVERMAGNWDAAR 86 (203)
T ss_dssp THHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTT--CCHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHc--CCcHHHHHHHHHHHHHHHHcCCHHHHH
Confidence 356667778999999999999999999999999875 467899999999999999999999999
No 43
>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae}
Probab=97.78 E-value=3.1e-05 Score=56.69 Aligned_cols=54 Identities=11% Similarity=0.094 Sum_probs=48.3
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHcCChhhHh
Q 027539 129 RTLLESSKIALDKGKLEDAVNYGTKALARMIAVCGPYHRTTASTYSLLAVVLYHTGDFNQVR 190 (222)
Q Consensus 129 ~~lle~g~~~l~qG~~e~A~~L~~eAL~i~eqV~G~~HpevA~~y~~LA~vy~~~Gd~~eAi 190 (222)
.-.+..|.++...|++++|++.|.+++.+ .|+-..++.++|.+|..+|++++|+
T Consensus 39 ~~~~~~a~~~~~~~~~~~A~~~~~~al~~--------~p~~~~~~~~lg~~~~~~~~~~~A~ 92 (126)
T 3upv_A 39 RGYSNRAAALAKLMSFPEAIADCNKAIEK--------DPNFVRAYIRKATAQIAVKEYASAL 92 (126)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHh--------CCCcHHHHHHHHHHHHHHhCHHHHH
Confidence 44566799999999999999999999987 4666788999999999999999999
No 44
>1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=97.78 E-value=3.9e-05 Score=65.19 Aligned_cols=62 Identities=21% Similarity=0.155 Sum_probs=54.0
Q ss_pred hHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHc-CChhhHh
Q 027539 127 DGRTLLESSKIALDKGKLEDAVNYGTKALARMIAVCGPYHRTTASTYSLLAVVLYHT-GDFNQVR 190 (222)
Q Consensus 127 ~a~~lle~g~~~l~qG~~e~A~~L~~eAL~i~eqV~G~~HpevA~~y~~LA~vy~~~-Gd~~eAi 190 (222)
.+..+.+.|.++..+|++++|++.|.+|+.++.+. ...+..+.+|++||.+|..+ |++++|+
T Consensus 76 ~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~--g~~~~~a~~~~~lg~~~~~~lg~~~~A~ 138 (292)
T 1qqe_A 76 AGNTYVEAYKCFKSGGNSVNAVDSLENAIQIFTHR--GQFRRGANFKFELGEILENDLHDYAKAI 138 (292)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHHHHHTTCCHHHHH
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHc--CCHHHHHHHHHHHHHHHHHhhcCHHHHH
Confidence 35667788999999999999999999999999764 23456789999999999996 9999998
No 45
>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis}
Probab=97.78 E-value=4.6e-05 Score=55.14 Aligned_cols=55 Identities=18% Similarity=0.106 Sum_probs=48.5
Q ss_pred HHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHcCChhhHh
Q 027539 128 GRTLLESSKIALDKGKLEDAVNYGTKALARMIAVCGPYHRTTASTYSLLAVVLYHTGDFNQVR 190 (222)
Q Consensus 128 a~~lle~g~~~l~qG~~e~A~~L~~eAL~i~eqV~G~~HpevA~~y~~LA~vy~~~Gd~~eAi 190 (222)
+.-.+..|.++..+|++++|...|.+++.+ .|+.+..+.+||.+|..+|++++|+
T Consensus 19 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~~--------~p~~~~~~~~la~~~~~~g~~~~A~ 73 (115)
T 2kat_A 19 MLLRFTLGKTYAEHEQFDAALPHLRAALDF--------DPTYSVAWKWLGKTLQGQGDRAGAR 73 (115)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHHTCHHHHH
T ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHHH--------CCCcHHHHHHHHHHHHHcCCHHHHH
Confidence 345666799999999999999999999986 4666778999999999999999999
No 46
>4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A*
Probab=97.77 E-value=1.3e-05 Score=78.65 Aligned_cols=59 Identities=31% Similarity=0.311 Sum_probs=45.6
Q ss_pred ccCchhHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHcCChhhHh
Q 027539 122 GCTSADGRTLLESSKIALDKGKLEDAVNYGTKALARMIAVCGPYHRTTASTYSLLAVVLYHTGDFNQVR 190 (222)
Q Consensus 122 ~p~s~~a~~lle~g~~~l~qG~~e~A~~L~~eAL~i~eqV~G~~HpevA~~y~~LA~vy~~~Gd~~eAi 190 (222)
.|..++|.. +.|.++.++|++++|+++|++|+.+ +|+-+.+|++||.+|..+|++++|+
T Consensus 5 ~P~~a~al~--nLG~~~~~~G~~~eAi~~~~kAl~l--------~P~~~~a~~nLg~~l~~~g~~~eA~ 63 (723)
T 4gyw_A 5 CPTHADSLN--NLANIKREQGNIEEAVRLYRKALEV--------FPEFAAAHSNLASVLQQQGKLQEAL 63 (723)
T ss_dssp -CHHHHHHH--HHHHHHHHTTCHHHHHHHHHHHHHH--------CSCCHHHHHHHHHHHHHTTCHHHHH
T ss_pred CCCcHHHHH--HHHHHHHHcCCHHHHHHHHHHHHHh--------CCCCHHHHHHHHHHHHHcCCHHHHH
Confidence 344445544 4488888889999888888888876 5677778888888888888888888
No 47
>2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8
Probab=97.76 E-value=2.1e-05 Score=64.07 Aligned_cols=74 Identities=14% Similarity=0.040 Sum_probs=59.4
Q ss_pred hhHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHhC----CCChHHHHHHHHHHHHHHHcCChhhHhhchHHhhhhhC
Q 027539 126 ADGRTLLESSKIALDKGKLEDAVNYGTKALARMIAVCG----PYHRTTASTYSLLAVVLYHTGDFNQVRQSSVVFQCQLG 201 (222)
Q Consensus 126 ~~a~~lle~g~~~l~qG~~e~A~~L~~eAL~i~eqV~G----~~HpevA~~y~~LA~vy~~~Gd~~eAi~~~~~~~~~~~ 201 (222)
..|+.+++.|..+...|++++|++.|.+||.+--.... ...|.-+.+|+++|.++..+|++++|+ ..+
T Consensus 9 ~~a~~~~~~G~~l~~~g~~eeAi~~Y~kAL~l~p~~~~~~a~~~~~~~a~a~~n~g~al~~Lgr~~eAl----~~~---- 80 (159)
T 2hr2_A 9 VGAYLALSDAQRQLVAGEYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEAL----HSA---- 80 (159)
T ss_dssp HHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHH----HHH----
T ss_pred HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCCcchhhhhhccchHHHHHHHHHHHHHCCCHHHHH----HHH----
Confidence 47889999999999999999999999999998754100 112335669999999999999999999 665
Q ss_pred CCCceEEE
Q 027539 202 DSKSSIII 209 (222)
Q Consensus 202 ~~~~a~~i 209 (222)
.+||.+
T Consensus 81 --~kAL~l 86 (159)
T 2hr2_A 81 --DKALHY 86 (159)
T ss_dssp --HHHHHH
T ss_pred --HHHHHh
Confidence 566654
No 48
>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A
Probab=97.76 E-value=8.9e-05 Score=52.78 Aligned_cols=61 Identities=11% Similarity=0.176 Sum_probs=53.9
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHcCChhhHh
Q 027539 129 RTLLESSKIALDKGKLEDAVNYGTKALARMIAVCGPYHRTTASTYSLLAVVLYHTGDFNQVR 190 (222)
Q Consensus 129 ~~lle~g~~~l~qG~~e~A~~L~~eAL~i~eqV~G~~HpevA~~y~~LA~vy~~~Gd~~eAi 190 (222)
.-.+..|.++..+|++++|.+++.+++.+... .++.++..+.++.++|.+|..+|++++|+
T Consensus 39 ~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~~~~~~~~la~~~~~~~~~~~A~ 99 (131)
T 1elr_A 39 TYITNQAAVYFEKGDYNKCRELCEKAIEVGRE-NREDYRQIAKAYARIGNSYFKEEKYKDAI 99 (131)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHH-STTCHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHhhccc-cchhHHHHHHHHHHHHHHHHHhccHHHHH
Confidence 34566799999999999999999999998764 35677777999999999999999999999
No 49
>3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A
Probab=97.75 E-value=3.4e-05 Score=65.22 Aligned_cols=74 Identities=11% Similarity=0.002 Sum_probs=62.7
Q ss_pred hhHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHcCC-hhhHhhchHHhhhhhCCCC
Q 027539 126 ADGRTLLESSKIALDKGKLEDAVNYGTKALARMIAVCGPYHRTTASTYSLLAVVLYHTGD-FNQVRQSSVVFQCQLGDSK 204 (222)
Q Consensus 126 ~~a~~lle~g~~~l~qG~~e~A~~L~~eAL~i~eqV~G~~HpevA~~y~~LA~vy~~~Gd-~~eAi~~~~~~~~~~~~~~ 204 (222)
..+.-+.+.|.++..+|++++|++++.+|+.+..+. ..++..+.+|.++|.+|..+|+ +++|+ .++ +
T Consensus 194 ~~~~~~~nlg~~y~~~~~y~~A~~~~~~al~~~~~~--~~~~~~~~~~~~lg~~~~~~g~~~~~A~----~~~------~ 261 (293)
T 3u3w_A 194 FDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRI--NSMALIGQLYYQRGECLRKLEYEEAEIE----DAY------K 261 (293)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHT--TBCTTHHHHHHHHHHHHHHTTCCHHHHH----HHH------H
T ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHc--CcHHHHHHHHHHHHHHHHHhCCcHHHHH----HHH------H
Confidence 445567788999999999999999999999998775 4567889999999999999994 69999 766 6
Q ss_pred ceEEEee
Q 027539 205 SSIIITS 211 (222)
Q Consensus 205 ~a~~i~e 211 (222)
+|+.|.+
T Consensus 262 ~Al~i~~ 268 (293)
T 3u3w_A 262 KASFFFD 268 (293)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 7776654
No 50
>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A
Probab=97.75 E-value=2.2e-05 Score=61.96 Aligned_cols=61 Identities=10% Similarity=-0.073 Sum_probs=50.1
Q ss_pred cCchhHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHcCChhhHhhchHHhh
Q 027539 123 CTSADGRTLLESSKIALDKGKLEDAVNYGTKALARMIAVCGPYHRTTASTYSLLAVVLYHTGDFNQVRQSSVVFQ 197 (222)
Q Consensus 123 p~s~~a~~lle~g~~~l~qG~~e~A~~L~~eAL~i~eqV~G~~HpevA~~y~~LA~vy~~~Gd~~eAi~~~~~~~ 197 (222)
|..+.+ .+..|.++..+|++++|++.|.+|+.+. |.+ +..+.+||.+|..+|++++|+ .++
T Consensus 67 P~~~~~--~~~lg~~~~~~g~~~~Ai~~~~~al~l~-----P~~---~~~~~~lg~~~~~lg~~~eA~----~~~ 127 (151)
T 3gyz_A 67 FYNVDY--IMGLAAIYQIKEQFQQAADLYAVAFALG-----KND---YTPVFHTGQCQLRLKAPLKAK----ECF 127 (151)
T ss_dssp TTCHHH--HHHHHHHHHHTTCHHHHHHHHHHHHHHS-----SSC---CHHHHHHHHHHHHTTCHHHHH----HHH
T ss_pred CCCHHH--HHHHHHHHHHHccHHHHHHHHHHHHhhC-----CCC---cHHHHHHHHHHHHcCCHHHHH----HHH
Confidence 344444 4455999999999999999999999873 444 457999999999999999999 666
No 51
>2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris}
Probab=97.74 E-value=4.5e-05 Score=55.30 Aligned_cols=54 Identities=24% Similarity=0.196 Sum_probs=25.5
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHcCChhhHh
Q 027539 132 LESSKIALDKGKLEDAVNYGTKALARMIAVCGPYHRTTASTYSLLAVVLYHTGDFNQVR 190 (222)
Q Consensus 132 le~g~~~l~qG~~e~A~~L~~eAL~i~eqV~G~~HpevA~~y~~LA~vy~~~Gd~~eAi 190 (222)
+..|..+..+|++++|.++|.+++.. .|.++..+..+..+|.+|+.+|++++|+
T Consensus 6 ~~~a~~~~~~~~~~~A~~~~~~~~~~-----~p~~~~~~~~~~~lg~~~~~~~~~~~A~ 59 (129)
T 2xev_A 6 YNVAFDALKNGKYDDASQLFLSFLEL-----YPNGVYTPNALYWLGESYYATRNFQLAE 59 (129)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHH-----CSSSTTHHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHhCCHHHHHHHHHHHHHH-----CCCCcccHHHHHHHHHHHHHhccHHHHH
Confidence 34444455555555555554444432 2344444444444555555555544444
No 52
>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens}
Probab=97.74 E-value=3.8e-05 Score=55.21 Aligned_cols=60 Identities=18% Similarity=0.153 Sum_probs=43.0
Q ss_pred cCchhHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHcCChhhHh
Q 027539 123 CTSADGRTLLESSKIALDKGKLEDAVNYGTKALARMIAVCGPYHRTTASTYSLLAVVLYHTGDFNQVR 190 (222)
Q Consensus 123 p~s~~a~~lle~g~~~l~qG~~e~A~~L~~eAL~i~eqV~G~~HpevA~~y~~LA~vy~~~Gd~~eAi 190 (222)
+........+..|..+..+|++++|.++|.+++.+ .|+-+.++..+|.+|..+|++++|+
T Consensus 11 ~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~--------~~~~~~~~~~la~~~~~~~~~~~A~ 70 (133)
T 2lni_A 11 MNPDLALMVKNKGNECFQKGDYPQAMKHYTEAIKR--------NPKDAKLYSNRAACYTKLLEFQLAL 70 (133)
T ss_dssp SSSCHHHHHHHHHHHHHHTTCSHHHHHHHHHHHTT--------CTTCHHHHHHHHHHHTTTTCHHHHH
T ss_pred cCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc--------CCCcHHHHHHHHHHHHHhccHHHHH
Confidence 34455666777788888888888888888877753 3444666777777777777777777
No 53
>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A
Probab=97.73 E-value=6.5e-05 Score=56.77 Aligned_cols=57 Identities=16% Similarity=0.031 Sum_probs=45.8
Q ss_pred hhHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHcCChhhHh
Q 027539 126 ADGRTLLESSKIALDKGKLEDAVNYGTKALARMIAVCGPYHRTTASTYSLLAVVLYHTGDFNQVR 190 (222)
Q Consensus 126 ~~a~~lle~g~~~l~qG~~e~A~~L~~eAL~i~eqV~G~~HpevA~~y~~LA~vy~~~Gd~~eAi 190 (222)
.+....+..|..+..+|++++|.++|.+++.+ +|+-+..+..||.+|..+|++++|+
T Consensus 16 ~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~--------~p~~~~~~~~lg~~~~~~g~~~~A~ 72 (142)
T 2xcb_A 16 DTLEQLYALGFNQYQAGKWDDAQKIFQALCML--------DHYDARYFLGLGACRQSLGLYEQAL 72 (142)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHHHHHHHHccHHHHHHHHHHHHHh--------CCccHHHHHHHHHHHHHHhhHHHHH
Confidence 45566777888999999999999998888864 4555667888888888888888887
No 54
>2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris}
Probab=97.73 E-value=7.4e-05 Score=54.13 Aligned_cols=57 Identities=16% Similarity=0.112 Sum_probs=51.4
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHcCChhhHh
Q 027539 129 RTLLESSKIALDKGKLEDAVNYGTKALARMIAVCGPYHRTTASTYSLLAVVLYHTGDFNQVR 190 (222)
Q Consensus 129 ~~lle~g~~~l~qG~~e~A~~L~~eAL~i~eqV~G~~HpevA~~y~~LA~vy~~~Gd~~eAi 190 (222)
.-.+..|.++..+|++++|.+.|.+++.. .|.++.+..++..+|.+|..+|++++|+
T Consensus 40 ~~~~~lg~~~~~~~~~~~A~~~~~~~~~~-----~p~~~~~~~~~~~la~~~~~~g~~~~A~ 96 (129)
T 2xev_A 40 NALYWLGESYYATRNFQLAEAQFRDLVSR-----YPTHDKAAGGLLKLGLSQYGEGKNTEAQ 96 (129)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHH-----CTTSTTHHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHHH-----CCCCcccHHHHHHHHHHHHHcCCHHHHH
Confidence 44566799999999999999999999885 4778888999999999999999999999
No 55
>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus}
Probab=97.73 E-value=3.9e-05 Score=58.99 Aligned_cols=54 Identities=15% Similarity=0.173 Sum_probs=48.6
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHcCChhhHh
Q 027539 129 RTLLESSKIALDKGKLEDAVNYGTKALARMIAVCGPYHRTTASTYSLLAVVLYHTGDFNQVR 190 (222)
Q Consensus 129 ~~lle~g~~~l~qG~~e~A~~L~~eAL~i~eqV~G~~HpevA~~y~~LA~vy~~~Gd~~eAi 190 (222)
.-.+..|.++...|++++|++.|.+++.+ +|+-..+|.++|.+|..+|++++|+
T Consensus 46 ~~~~~l~~~~~~~g~~~~A~~~~~~al~~--------~p~~~~~~~~lg~~~~~~g~~~~A~ 99 (164)
T 3sz7_A 46 IYLSNRAAAYSASGQHEKAAEDAELATVV--------DPKYSKAWSRLGLARFDMADYKGAK 99 (164)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHHh--------CCCCHHHHHHHHHHHHHccCHHHHH
Confidence 44566799999999999999999999987 4666789999999999999999999
No 56
>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A*
Probab=97.71 E-value=3.8e-05 Score=59.37 Aligned_cols=57 Identities=12% Similarity=0.020 Sum_probs=39.6
Q ss_pred hhHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHcCChhhHh
Q 027539 126 ADGRTLLESSKIALDKGKLEDAVNYGTKALARMIAVCGPYHRTTASTYSLLAVVLYHTGDFNQVR 190 (222)
Q Consensus 126 ~~a~~lle~g~~~l~qG~~e~A~~L~~eAL~i~eqV~G~~HpevA~~y~~LA~vy~~~Gd~~eAi 190 (222)
.++...++.|..+..+|++++|.++|.+++.+ .|+-+..+.+||.+|..+|++++|+
T Consensus 19 ~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~--------~p~~~~~~~~lg~~~~~~g~~~~A~ 75 (148)
T 2vgx_A 19 DTLEQLYSLAFNQYQSGXYEDAHXVFQALCVL--------DHYDSRFFLGLGACRQAMGQYDLAI 75 (148)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHTTCHHHHH
T ss_pred hhHHHHHHHHHHHHHcCChHHHHHHHHHHHHc--------CcccHHHHHHHHHHHHHHhhHHHHH
Confidence 34555666777777788888777777777764 3444556677777777777777776
No 57
>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis}
Probab=97.70 E-value=5.1e-05 Score=66.14 Aligned_cols=62 Identities=16% Similarity=-0.042 Sum_probs=42.4
Q ss_pred hhHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHcCChhhHh
Q 027539 126 ADGRTLLESSKIALDKGKLEDAVNYGTKALARMIAVCGPYHRTTASTYSLLAVVLYHTGDFNQVR 190 (222)
Q Consensus 126 ~~a~~lle~g~~~l~qG~~e~A~~L~~eAL~i~eqV~G~~HpevA~~y~~LA~vy~~~Gd~~eAi 190 (222)
..+....+.|.++..+|++++|.+++.+|+.+.++. .+|..+.++.+||.+|..+|++++|+
T Consensus 220 ~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~---~~~~~~~~~~~la~~~~~~g~~~~A~ 281 (378)
T 3q15_A 220 FIAISLLNIANSYDRSGDDQMAVEHFQKAAKVSREK---VPDLLPKVLFGLSWTLCKAGQTQKAF 281 (378)
T ss_dssp HHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHH---CGGGHHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhh---CChhHHHHHHHHHHHHHHCCCHHHHH
Confidence 344455556777777777777777777777776664 44555777777777777777777777
No 58
>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis}
Probab=97.69 E-value=7.4e-05 Score=65.14 Aligned_cols=63 Identities=16% Similarity=0.023 Sum_probs=56.3
Q ss_pred hhHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHcCChhhHh
Q 027539 126 ADGRTLLESSKIALDKGKLEDAVNYGTKALARMIAVCGPYHRTTASTYSLLAVVLYHTGDFNQVR 190 (222)
Q Consensus 126 ~~a~~lle~g~~~l~qG~~e~A~~L~~eAL~i~eqV~G~~HpevA~~y~~LA~vy~~~Gd~~eAi 190 (222)
..+......|.++...|++++|.+.|.+|+.+..+. ...+..+.++++||.+|..+|++++|+
T Consensus 180 ~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~--~~~~~~~~~~~~lg~~y~~~~~~~~A~ 242 (378)
T 3q15_A 180 RTIQSLFVIAGNYDDFKHYDKALPHLEAALELAMDI--QNDRFIAISLLNIANSYDRSGDDQMAV 242 (378)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHHHHHHTCHHHHH
T ss_pred hHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHc--CCHHHHHHHHHHHHHHHHHCCCHHHHH
Confidence 356666777999999999999999999999999876 445689999999999999999999999
No 59
>3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A
Probab=97.68 E-value=6.1e-05 Score=58.26 Aligned_cols=53 Identities=17% Similarity=0.147 Sum_probs=47.8
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHcCChhhHh
Q 027539 130 TLLESSKIALDKGKLEDAVNYGTKALARMIAVCGPYHRTTASTYSLLAVVLYHTGDFNQVR 190 (222)
Q Consensus 130 ~lle~g~~~l~qG~~e~A~~L~~eAL~i~eqV~G~~HpevA~~y~~LA~vy~~~Gd~~eAi 190 (222)
-.++.|.++..+|++++|++.|++|+.+ +|+-+.++..||.+|..+|++++|+
T Consensus 7 iy~~lG~~~~~~g~~~~A~~~~~~al~~--------~p~~~~~~~~la~~~~~~~~~~~a~ 59 (184)
T 3vtx_A 7 IYMDIGDKKRTKGDFDGAIRAYKKVLKA--------DPNNVETLLKLGKTYMDIGLPNDAI 59 (184)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHh--------CCCCHHHHHHHHHHHHHCCCHHHHH
Confidence 3456799999999999999999999976 5666788999999999999999999
No 60
>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A
Probab=97.67 E-value=8.3e-05 Score=52.92 Aligned_cols=56 Identities=23% Similarity=0.235 Sum_probs=49.5
Q ss_pred hHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHcCChhhHh
Q 027539 127 DGRTLLESSKIALDKGKLEDAVNYGTKALARMIAVCGPYHRTTASTYSLLAVVLYHTGDFNQVR 190 (222)
Q Consensus 127 ~a~~lle~g~~~l~qG~~e~A~~L~~eAL~i~eqV~G~~HpevA~~y~~LA~vy~~~Gd~~eAi 190 (222)
.+...+..|..+...|++++|.++|.+++.+ .|+.+.++.++|.+|..+|++++|+
T Consensus 3 ~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~--------~~~~~~~~~~la~~~~~~~~~~~A~ 58 (131)
T 1elr_A 3 QALKEKELGNDAYKKKDFDTALKHYDKAKEL--------DPTNMTYITNQAAVYFEKGDYNKCR 58 (131)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHHTCHHHHH
T ss_pred HHHHHHHHHHHHHHhcCHHHHHHHHHHHHhc--------CCccHHHHHHHHHHHHHhccHHHHH
Confidence 4566778899999999999999999999986 3555678999999999999999999
No 61
>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans}
Probab=97.65 E-value=5.1e-05 Score=58.21 Aligned_cols=55 Identities=16% Similarity=0.119 Sum_probs=49.5
Q ss_pred HHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHcCChhhHh
Q 027539 128 GRTLLESSKIALDKGKLEDAVNYGTKALARMIAVCGPYHRTTASTYSLLAVVLYHTGDFNQVR 190 (222)
Q Consensus 128 a~~lle~g~~~l~qG~~e~A~~L~~eAL~i~eqV~G~~HpevA~~y~~LA~vy~~~Gd~~eAi 190 (222)
+.-.+..|.++...|++++|+..+.+|+.+ .|+-+.+|..+|.+|+.+|++++|+
T Consensus 63 ~~~~~nla~~~~~~~~~~~A~~~~~~al~~--------~p~~~~a~~~~g~~~~~~g~~~~A~ 117 (162)
T 3rkv_A 63 IPLYANMSQCYLNIGDLHEAEETSSEVLKR--------EETNEKALFRRAKARIAAWKLDEAE 117 (162)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--------STTCHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHHHHhcCcHHHHHHHHHHHHhc--------CCcchHHHHHHHHHHHHHhcHHHHH
Confidence 344566799999999999999999999988 5777789999999999999999999
No 62
>3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus}
Probab=97.64 E-value=6e-05 Score=62.03 Aligned_cols=62 Identities=16% Similarity=0.202 Sum_probs=56.1
Q ss_pred CchhHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHcCChhhHh
Q 027539 124 TSADGRTLLESSKIALDKGKLEDAVNYGTKALARMIAVCGPYHRTTASTYSLLAVVLYHTGDFNQVR 190 (222)
Q Consensus 124 ~s~~a~~lle~g~~~l~qG~~e~A~~L~~eAL~i~eqV~G~~HpevA~~y~~LA~vy~~~Gd~~eAi 190 (222)
...++..++..|..++.+|++++|.++|.+++..+ |.+|..+.++..||.+|+.+|++++|+
T Consensus 11 ~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~-----p~~~~~~~a~~~lg~~~~~~~~~~~A~ 72 (261)
T 3qky_A 11 RHSSPQEAFERAMEFYNQGKYDRAIEYFKAVFTYG-----RTHEWAADAQFYLARAYYQNKEYLLAA 72 (261)
T ss_dssp CCSSHHHHHHHHHHHHHTTCHHHHHHHHHHHGGGC-----SCSTTHHHHHHHHHHHHHHTTCHHHHH
T ss_pred CCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC-----CCCcchHHHHHHHHHHHHHhCcHHHHH
Confidence 34567789999999999999999999999998754 788888999999999999999999999
No 63
>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus}
Probab=97.63 E-value=0.0001 Score=60.22 Aligned_cols=73 Identities=15% Similarity=0.094 Sum_probs=55.5
Q ss_pred HHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHcCChhhHhhchHHhhhhhCCCCceE
Q 027539 128 GRTLLESSKIALDKGKLEDAVNYGTKALARMIAVCGPYHRTTASTYSLLAVVLYHTGDFNQVRQSSVVFQCQLGDSKSSI 207 (222)
Q Consensus 128 a~~lle~g~~~l~qG~~e~A~~L~~eAL~i~eqV~G~~HpevA~~y~~LA~vy~~~Gd~~eAi~~~~~~~~~~~~~~~a~ 207 (222)
+......|.++..+|++++|.+++.+++.+..+.-. ++..+.++..||.+|..+|++++|+ .+. ++|+
T Consensus 263 ~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~--~~~~~~~~~~la~~~~~~g~~~~A~----~~~------~~a~ 330 (338)
T 3ro2_A 263 AQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKD--RIGEGRACWSLGNAYTALGNHDQAM----HFA------EKHL 330 (338)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTC--HHHHHHHHHHHHHHHHHHTCHHHHH----HHH------HHHH
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcCC--cHHHHHHHHHHHHHHHHcCChHHHH----HHH------HHHH
Confidence 555666788888888888888888888888877633 6778888888888888888888888 666 5666
Q ss_pred EEeee
Q 027539 208 IITSF 212 (222)
Q Consensus 208 ~i~e~ 212 (222)
.+.++
T Consensus 331 ~~~~~ 335 (338)
T 3ro2_A 331 EISRE 335 (338)
T ss_dssp HC---
T ss_pred HHHHh
Confidence 66544
No 64
>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus}
Probab=97.63 E-value=9.1e-05 Score=59.77 Aligned_cols=56 Identities=18% Similarity=0.300 Sum_probs=51.0
Q ss_pred hHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHhCCCChHHHHHHHH----------------HHHHHHHcCChhhHh
Q 027539 127 DGRTLLESSKIALDKGKLEDAVNYGTKALARMIAVCGPYHRTTASTYSL----------------LAVVLYHTGDFNQVR 190 (222)
Q Consensus 127 ~a~~lle~g~~~l~qG~~e~A~~L~~eAL~i~eqV~G~~HpevA~~y~~----------------LA~vy~~~Gd~~eAi 190 (222)
.++.++..|..++.+|++++|+++|.+++.+ +|+-+..+.. ||.+|..+|++++|+
T Consensus 3 ~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~--------~p~~~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~ 74 (208)
T 3urz_A 3 SVDEMLQKVSAAIEAGQNGQAVSYFRQTIAL--------NIDRTEMYYWTNVDKNSEISSKLATELALAYKKNRNYDKAY 74 (208)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------CHHHHHHHHHHHSCTTSHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--------CCCChHHHHHhhhcchhhhhHHHHHHHHHHHHHCCCHHHHH
Confidence 4678899999999999999999999999986 6777778888 999999999999999
No 65
>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1
Probab=97.60 E-value=0.00012 Score=51.03 Aligned_cols=55 Identities=22% Similarity=0.294 Sum_probs=39.5
Q ss_pred HHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHcCChhhHh
Q 027539 128 GRTLLESSKIALDKGKLEDAVNYGTKALARMIAVCGPYHRTTASTYSLLAVVLYHTGDFNQVR 190 (222)
Q Consensus 128 a~~lle~g~~~l~qG~~e~A~~L~~eAL~i~eqV~G~~HpevA~~y~~LA~vy~~~Gd~~eAi 190 (222)
+...+..|..+..+|++++|.++|.+++.+ .|+-...+..+|.+|..+|++++|+
T Consensus 4 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~--------~~~~~~~~~~~a~~~~~~~~~~~A~ 58 (118)
T 1elw_A 4 VNELKEKGNKALSVGNIDDALQCYSEAIKL--------DPHNHVLYSNRSAAYAKKGDYQKAY 58 (118)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHHTCHHHHH
T ss_pred HHHHHHHHHHHHHcccHHHHHHHHHHHHHH--------CCCcHHHHHHHHHHHHhhccHHHHH
Confidence 456667788888888888888888877764 2333456777777777777777777
No 66
>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1
Probab=97.60 E-value=0.00012 Score=51.82 Aligned_cols=57 Identities=18% Similarity=0.223 Sum_probs=44.4
Q ss_pred hhHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHcCChhhHh
Q 027539 126 ADGRTLLESSKIALDKGKLEDAVNYGTKALARMIAVCGPYHRTTASTYSLLAVVLYHTGDFNQVR 190 (222)
Q Consensus 126 ~~a~~lle~g~~~l~qG~~e~A~~L~~eAL~i~eqV~G~~HpevA~~y~~LA~vy~~~Gd~~eAi 190 (222)
..+...+..|..+...|++++|.+++.+++.+ +|+-+..+..+|.+|..+|++++|+
T Consensus 10 ~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~--------~~~~~~~~~~~a~~~~~~~~~~~A~ 66 (131)
T 2vyi_A 10 AEAERLKTEGNEQMKVENFEAAVHFYGKAIEL--------NPANAVYFCNRAAAYSKLGNYAGAV 66 (131)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHTTCHHHHH
T ss_pred hhhHHHHHHHHHHHHccCHHHHHHHHHHHHHc--------CCCCHHHHHHHHHHHHHhhchHHHH
Confidence 45666777788888888888888888888875 4445667888888888888888887
No 67
>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B*
Probab=97.59 E-value=0.00014 Score=53.26 Aligned_cols=54 Identities=11% Similarity=0.059 Sum_probs=47.8
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHcCChhhHh
Q 027539 129 RTLLESSKIALDKGKLEDAVNYGTKALARMIAVCGPYHRTTASTYSLLAVVLYHTGDFNQVR 190 (222)
Q Consensus 129 ~~lle~g~~~l~qG~~e~A~~L~~eAL~i~eqV~G~~HpevA~~y~~LA~vy~~~Gd~~eAi 190 (222)
.-.+..|.++..+|++++|...+.+++.+ +|+.+.++.++|.+|..+|++++|+
T Consensus 44 ~~~~~l~~~~~~~~~~~~A~~~~~~al~~--------~p~~~~~~~~l~~~~~~~~~~~~A~ 97 (137)
T 3q49_B 44 VYYTNRALCYLKMQQPEQALADCRRALEL--------DGQSVKAHFFLGQCQLEMESYDEAI 97 (137)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHh--------CchhHHHHHHHHHHHHHHhhHHHHH
Confidence 34566699999999999999999999986 4666779999999999999999999
No 68
>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster}
Probab=97.58 E-value=9.7e-05 Score=63.81 Aligned_cols=73 Identities=10% Similarity=0.073 Sum_probs=49.4
Q ss_pred HHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHcCChhhHhhchHHhhhhhCCCCceE
Q 027539 128 GRTLLESSKIALDKGKLEDAVNYGTKALARMIAVCGPYHRTTASTYSLLAVVLYHTGDFNQVRQSSVVFQCQLGDSKSSI 207 (222)
Q Consensus 128 a~~lle~g~~~l~qG~~e~A~~L~~eAL~i~eqV~G~~HpevA~~y~~LA~vy~~~Gd~~eAi~~~~~~~~~~~~~~~a~ 207 (222)
+......|.++..+|++++|.+++.+++.+..+. ..++..+.++..||.+|..+|++++|+ .+. ++|+
T Consensus 303 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~--~~~~~~~~~~~~la~~~~~~g~~~~A~----~~~------~~al 370 (411)
T 4a1s_A 303 AQSCYSLGNTYTLLHEFNTAIEYHNRHLAIAQEL--GDRIGEARACWSLGNAHSAIGGHERAL----KYA------EQHL 370 (411)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHH--TCHHHHHHHHHHHHHHHHHTTCHHHHH----HHH------HHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHC--CChHHHHHHHHHHHHHHHHhccHHHHH----HHH------HHHH
Confidence 4455566777777777777777777777777665 346667777777777777777777777 555 4555
Q ss_pred EEeee
Q 027539 208 IITSF 212 (222)
Q Consensus 208 ~i~e~ 212 (222)
.+.++
T Consensus 371 ~~~~~ 375 (411)
T 4a1s_A 371 QLAXX 375 (411)
T ss_dssp HHCCH
T ss_pred HHHhh
Confidence 55443
No 69
>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio}
Probab=97.58 E-value=9.4e-05 Score=63.27 Aligned_cols=61 Identities=18% Similarity=0.107 Sum_probs=52.8
Q ss_pred hHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHcCChhhHh
Q 027539 127 DGRTLLESSKIALDKGKLEDAVNYGTKALARMIAVCGPYHRTTASTYSLLAVVLYHTGDFNQVR 190 (222)
Q Consensus 127 ~a~~lle~g~~~l~qG~~e~A~~L~~eAL~i~eqV~G~~HpevA~~y~~LA~vy~~~Gd~~eAi 190 (222)
.+..+.+.|.++.. |++++|+++|.+|+.++.+. | .++..+.+++++|.+|..+|++++|+
T Consensus 115 ~a~~~~~lg~~~~~-g~~~~A~~~~~~Al~~~~~~-~-~~~~~~~~~~~lg~~~~~~g~~~~A~ 175 (307)
T 2ifu_A 115 AAMALDRAGKLMEP-LDLSKAVHLYQQAAAVFENE-E-RLRQAAELIGKASRLLVRQQKFDEAA 175 (307)
T ss_dssp HHHHHHHHHHHHTT-TCHHHHHHHHHHHHHHHHHT-T-CHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHHHHHc-CCHHHHHHHHHHHHHHHHhC-C-ChhHHHHHHHHHHHHHHHcCCHHHHH
Confidence 45666778999988 99999999999999999873 2 34567899999999999999999999
No 70
>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A*
Probab=97.58 E-value=0.00011 Score=56.78 Aligned_cols=52 Identities=12% Similarity=0.034 Sum_probs=45.6
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHcCChhhHh
Q 027539 131 LLESSKIALDKGKLEDAVNYGTKALARMIAVCGPYHRTTASTYSLLAVVLYHTGDFNQVR 190 (222)
Q Consensus 131 lle~g~~~l~qG~~e~A~~L~~eAL~i~eqV~G~~HpevA~~y~~LA~vy~~~Gd~~eAi 190 (222)
.+..|.++...|++++|++.|.+|+.+ .|.+ ...+.++|.+|..+|++++|+
T Consensus 58 ~~~lg~~~~~~g~~~~A~~~~~~al~l-----~p~~---~~~~~~lg~~~~~~g~~~~A~ 109 (148)
T 2vgx_A 58 FLGLGACRQAMGQYDLAIHSYSYGAVM-----DIXE---PRFPFHAAECLLQXGELAEAE 109 (148)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHH-----STTC---THHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHhc-----CCCC---chHHHHHHHHHHHcCCHHHHH
Confidence 456699999999999999999999986 3444 567899999999999999999
No 71
>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens}
Probab=97.58 E-value=3.8e-05 Score=67.78 Aligned_cols=61 Identities=15% Similarity=0.104 Sum_probs=54.5
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHcC--ChhhHh
Q 027539 130 TLLESSKIALDKGKLEDAVNYGTKALARMIAVCGPYHRTTASTYSLLAVVLYHTG--DFNQVR 190 (222)
Q Consensus 130 ~lle~g~~~l~qG~~e~A~~L~~eAL~i~eqV~G~~HpevA~~y~~LA~vy~~~G--d~~eAi 190 (222)
...+.|.++..+|++++|.+++.+++.+..+..++.|++.+..|.++|..+...| ++++|+
T Consensus 96 ~~~nla~~y~~~g~~~~A~~~~~ka~~i~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~y~~A~ 158 (472)
T 4g1t_A 96 TWGNYAWVYYHMGRLSDVQIYVDKVKHVCEKFSSPYRIESPELDCEEGWTRLKCGGNQNERAK 158 (472)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCSSCCCCHHHHHHHHHHHHHHCTTHHHHHH
T ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHHHhHhcccccchhhHHHHHHHHHHHHHHccccHHHHH
Confidence 3445599999999999999999999999999999999999999999998777654 688998
No 72
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2
Probab=97.57 E-value=7e-05 Score=63.76 Aligned_cols=56 Identities=18% Similarity=0.135 Sum_probs=47.7
Q ss_pred hHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHcCChhhHh
Q 027539 127 DGRTLLESSKIALDKGKLEDAVNYGTKALARMIAVCGPYHRTTASTYSLLAVVLYHTGDFNQVR 190 (222)
Q Consensus 127 ~a~~lle~g~~~l~qG~~e~A~~L~~eAL~i~eqV~G~~HpevA~~y~~LA~vy~~~Gd~~eAi 190 (222)
.+..+.+.|..+..+|++++|+++|.+|+.+ +|+.+..|.++|.+|..+|++++|+
T Consensus 3 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~--------~p~~~~~~~~la~~~~~~~~~~~A~ 58 (281)
T 2c2l_A 3 SAQELKEQGNRLFVGRKYPEAAACYGRAITR--------NPLVAVYYTNRALCYLKMQQPEQAL 58 (281)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------CSCCHHHHHHHHHHHHHTTCHHHHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--------CCccHHHHHHHHHHHHHhcCHHHHH
Confidence 4566778899999999999999999999986 5666778888999999999988888
No 73
>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A
Probab=97.56 E-value=0.00015 Score=54.27 Aligned_cols=57 Identities=12% Similarity=0.157 Sum_probs=48.6
Q ss_pred hhHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHcCChhhHh
Q 027539 126 ADGRTLLESSKIALDKGKLEDAVNYGTKALARMIAVCGPYHRTTASTYSLLAVVLYHTGDFNQVR 190 (222)
Q Consensus 126 ~~a~~lle~g~~~l~qG~~e~A~~L~~eAL~i~eqV~G~~HpevA~~y~~LA~vy~~~Gd~~eAi 190 (222)
..+..++..|..+..+|++++|..+|.+++.+ +|+.+.++.++|.+|..+|++++|+
T Consensus 11 ~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~--------~~~~~~~~~~~a~~~~~~~~~~~A~ 67 (166)
T 1a17_A 11 KRAEELKTQANDYFKAKDYENAIKFYSQAIEL--------NPSNAIYYGNRSLAYLRTECYGYAL 67 (166)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------STTCHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHHHHHHHccCHHHHHHHHHHHHHh--------CCCChHHHHHHHHHHHHcCCHHHHH
Confidence 45677888899999999999999999999885 4555778889999999999999988
No 74
>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1
Probab=97.55 E-value=0.00016 Score=50.39 Aligned_cols=54 Identities=20% Similarity=0.193 Sum_probs=47.5
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHcCChhhHh
Q 027539 129 RTLLESSKIALDKGKLEDAVNYGTKALARMIAVCGPYHRTTASTYSLLAVVLYHTGDFNQVR 190 (222)
Q Consensus 129 ~~lle~g~~~l~qG~~e~A~~L~~eAL~i~eqV~G~~HpevA~~y~~LA~vy~~~Gd~~eAi 190 (222)
.-.+..|.++..+|++++|.+.+.+++.+ +|+...++.++|.+|..+|++++|+
T Consensus 39 ~~~~~~a~~~~~~~~~~~A~~~~~~~~~~--------~~~~~~~~~~~a~~~~~~~~~~~A~ 92 (118)
T 1elw_A 39 VLYSNRSAAYAKKGDYQKAYEDGCKTVDL--------KPDWGKGYSRKAAALEFLNRFEEAK 92 (118)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHHHhhccHHHHHHHHHHHHHh--------CcccHHHHHHHHHHHHHHhhHHHHH
Confidence 34566799999999999999999999986 4555678999999999999999999
No 75
>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1
Probab=97.54 E-value=7.5e-05 Score=55.71 Aligned_cols=62 Identities=11% Similarity=-0.097 Sum_probs=50.7
Q ss_pred ccCchhHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHcCChhhHhhchHHhh
Q 027539 122 GCTSADGRTLLESSKIALDKGKLEDAVNYGTKALARMIAVCGPYHRTTASTYSLLAVVLYHTGDFNQVRQSSVVFQ 197 (222)
Q Consensus 122 ~p~s~~a~~lle~g~~~l~qG~~e~A~~L~~eAL~i~eqV~G~~HpevA~~y~~LA~vy~~~Gd~~eAi~~~~~~~ 197 (222)
.|..+.+ .+..|.++...|++++|++.|.+|+.+ .|+-...+.+||.+|..+|++++|+ .+.
T Consensus 47 ~P~~~~a--~~~lg~~~~~~g~~~~A~~~~~~al~l--------~P~~~~~~~~la~~~~~~g~~~~A~----~~~ 108 (121)
T 1hxi_A 47 EPEREEA--WRSLGLTQAENEKDGLAIIALNHARML--------DPKDIAVHAALAVSHTNEHNANAAL----ASL 108 (121)
T ss_dssp STTCHHH--HHHHHHHHHHTTCHHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHHHHHHHHH----HHH
T ss_pred CCCCHHH--HHHHHHHHHHcCCHHHHHHHHHHHHHh--------CCCCHHHHHHHHHHHHHcCCHHHHH----HHH
Confidence 4444444 455699999999999999999999986 3444568899999999999999999 555
No 76
>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis}
Probab=97.54 E-value=8.6e-05 Score=51.54 Aligned_cols=51 Identities=12% Similarity=0.242 Sum_probs=31.5
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHcCChhhHh
Q 027539 132 LESSKIALDKGKLEDAVNYGTKALARMIAVCGPYHRTTASTYSLLAVVLYHTGDFNQVR 190 (222)
Q Consensus 132 le~g~~~l~qG~~e~A~~L~~eAL~i~eqV~G~~HpevA~~y~~LA~vy~~~Gd~~eAi 190 (222)
+..|..+..+|++++|.++|.+++.+ .|+....+.++|.+|+.+|++++|+
T Consensus 10 ~~~~~~~~~~~~~~~A~~~~~~a~~~--------~~~~~~~~~~~a~~~~~~~~~~~A~ 60 (112)
T 2kck_A 10 YLEGVLQYDAGNYTESIDLFEKAIQL--------DPEESKYWLMKGKALYNLERYEEAV 60 (112)
T ss_dssp GGHHHHHHSSCCHHHHHHHHHHHHHH--------CCCCHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHhhhHHHHHHHHHHHHHh--------CcCCHHHHHHHHHHHHHccCHHHHH
Confidence 34466666666666666666666654 2333445666666666666666666
No 77
>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A
Probab=97.51 E-value=0.00014 Score=65.10 Aligned_cols=65 Identities=12% Similarity=0.025 Sum_probs=57.0
Q ss_pred hhHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHH--------hCCCChHHHHHHHHHHHHHHHcCChhhHh
Q 027539 126 ADGRTLLESSKIALDKGKLEDAVNYGTKALARMIAV--------CGPYHRTTASTYSLLAVVLYHTGDFNQVR 190 (222)
Q Consensus 126 ~~a~~lle~g~~~l~qG~~e~A~~L~~eAL~i~eqV--------~G~~HpevA~~y~~LA~vy~~~Gd~~eAi 190 (222)
..+..+.+.|..+..+|++++|++.|++|+.+..+. ....+|.-+.+|.++|.+|+.+|++++|+
T Consensus 221 ~~a~~~~~~g~~~~~~g~~~~Ai~~y~kAl~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~ 293 (370)
T 1ihg_A 221 LISEDLKNIGNTFFKSQNWEMAIKKYTKVLRYVEGSRAAAEDADGAKLQPVALSCVLNIGACKLKMSDWQGAV 293 (370)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHSCHHHHGGGHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhcCccccChHHHHHHHHHHHHHHHHHHHHHHhccCHHHHH
Confidence 456678888999999999999999999999987763 12378899999999999999999999999
No 78
>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A
Probab=97.49 E-value=0.00011 Score=55.44 Aligned_cols=53 Identities=13% Similarity=-0.011 Sum_probs=45.9
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHcCChhhHh
Q 027539 130 TLLESSKIALDKGKLEDAVNYGTKALARMIAVCGPYHRTTASTYSLLAVVLYHTGDFNQVR 190 (222)
Q Consensus 130 ~lle~g~~~l~qG~~e~A~~L~~eAL~i~eqV~G~~HpevA~~y~~LA~vy~~~Gd~~eAi 190 (222)
-.+..|.++..+|++++|++.|.+|+.+ .|.+| ..+.++|.+|..+|++++|+
T Consensus 54 ~~~~lg~~~~~~g~~~~A~~~~~~al~~-----~p~~~---~~~~~lg~~~~~~g~~~~A~ 106 (142)
T 2xcb_A 54 YFLGLGACRQSLGLYEQALQSYSYGALM-----DINEP---RFPFHAAECHLQLGDLDGAE 106 (142)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHH-----CTTCT---HHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHhc-----CCCCc---HHHHHHHHHHHHcCCHHHHH
Confidence 3455699999999999999999999986 35555 56899999999999999999
No 79
>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus}
Probab=97.49 E-value=0.0004 Score=56.68 Aligned_cols=61 Identities=13% Similarity=0.092 Sum_probs=56.1
Q ss_pred HHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHcCChhhHh
Q 027539 128 GRTLLESSKIALDKGKLEDAVNYGTKALARMIAVCGPYHRTTASTYSLLAVVLYHTGDFNQVR 190 (222)
Q Consensus 128 a~~lle~g~~~l~qG~~e~A~~L~~eAL~i~eqV~G~~HpevA~~y~~LA~vy~~~Gd~~eAi 190 (222)
+.-....|..+...|++++|.+++.+++.+..+. ..+|..+.++..+|.+|..+|++++|+
T Consensus 43 ~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~--~~~~~~~~~~~~l~~~~~~~g~~~~A~ 103 (338)
T 3ro2_A 43 SAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTI--GDQLGEAKASGNLGNTLKVLGNFDEAI 103 (338)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHH--TCHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcc--cccHHHHHHHHHHHHHHHHccCHHHHH
Confidence 4556778999999999999999999999999887 567899999999999999999999999
No 80
>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio}
Probab=97.48 E-value=0.00019 Score=61.35 Aligned_cols=66 Identities=8% Similarity=-0.042 Sum_probs=55.3
Q ss_pred cCchhHHHHHHH-HHHHHhcCChHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHcCChhhHh
Q 027539 123 CTSADGRTLLES-SKIALDKGKLEDAVNYGTKALARMIAVCGPYHRTTASTYSLLAVVLYHTGDFNQVR 190 (222)
Q Consensus 123 p~s~~a~~lle~-g~~~l~qG~~e~A~~L~~eAL~i~eqV~G~~HpevA~~y~~LA~vy~~~Gd~~eAi 190 (222)
+.-..|-+.++. |.++..+|++++|.+.|.+|+.++.+. | ..++.+.+|+++|.+|..+|++++|+
T Consensus 30 ~~~~~A~~~~~~a~~~~~~~g~~~~A~~~~~~al~~~~~~-~-~~~~~a~~~~~lg~~~~~~g~~~~A~ 96 (307)
T 2ifu_A 30 PDYDSAASEYAKAAVAFKNAKQLEQAKDAYLQEAEAHANN-R-SLFHAAKAFEQAGMMLKDLQRMPEAV 96 (307)
T ss_dssp CCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHT-T-CHHHHHHHHHHHHHHHHHTTCGGGGH
T ss_pred CCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHc-C-CHHHHHHHHHHHHHHHHhCCCHHHHH
Confidence 334555555555 588999999999999999999999886 3 46688999999999999999999999
No 81
>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens}
Probab=97.46 E-value=0.00019 Score=51.50 Aligned_cols=54 Identities=11% Similarity=0.051 Sum_probs=47.7
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHcCChhhHh
Q 027539 129 RTLLESSKIALDKGKLEDAVNYGTKALARMIAVCGPYHRTTASTYSLLAVVLYHTGDFNQVR 190 (222)
Q Consensus 129 ~~lle~g~~~l~qG~~e~A~~L~~eAL~i~eqV~G~~HpevA~~y~~LA~vy~~~Gd~~eAi 190 (222)
.-.+..|.++..+|++++|.+++.+++.+ .|+-+.++.++|.+|..+|++++|+
T Consensus 51 ~~~~~la~~~~~~~~~~~A~~~~~~a~~~--------~~~~~~~~~~la~~~~~~~~~~~A~ 104 (133)
T 2lni_A 51 KLYSNRAACYTKLLEFQLALKDCEECIQL--------EPTFIKGYTRKAAALEAMKDYTKAM 104 (133)
T ss_dssp HHHHHHHHHHTTTTCHHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHHh--------CCCchHHHHHHHHHHHHHhhHHHHH
Confidence 44566799999999999999999999986 4556678999999999999999999
No 82
>4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A*
Probab=97.46 E-value=0.00012 Score=56.46 Aligned_cols=58 Identities=9% Similarity=-0.003 Sum_probs=48.4
Q ss_pred cCchhHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHcCChhhHh
Q 027539 123 CTSADGRTLLESSKIALDKGKLEDAVNYGTKALARMIAVCGPYHRTTASTYSLLAVVLYHTGDFNQVR 190 (222)
Q Consensus 123 p~s~~a~~lle~g~~~l~qG~~e~A~~L~~eAL~i~eqV~G~~HpevA~~y~~LA~vy~~~Gd~~eAi 190 (222)
|..+.+... .|.++...|++++|+..|.+|+.+ .|+-..++.+||.+|..+|++++|+
T Consensus 62 p~~~~a~~~--lg~~~~~~~~~~~A~~~~~~al~~--------~p~~~~~~~~la~~~~~~~~~~~aa 119 (150)
T 4ga2_A 62 ERDPKAHRF--LGLLYELEENTDKAVECYRRSVEL--------NPTQKDLVLKIAELLCKNDVTDGRA 119 (150)
T ss_dssp TTCHHHHHH--HHHHHHHTTCHHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHHCSSSSHH
T ss_pred CCCHHHHHH--HHHHHHHcCchHHHHHHHHHHHHh--------CCCCHHHHHHHHHHHHHcCChHHHH
Confidence 444555444 599999999999999999999986 4556678999999999999998876
No 83
>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1
Probab=97.44 E-value=0.00029 Score=49.82 Aligned_cols=54 Identities=11% Similarity=0.105 Sum_probs=47.4
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHcCChhhHh
Q 027539 129 RTLLESSKIALDKGKLEDAVNYGTKALARMIAVCGPYHRTTASTYSLLAVVLYHTGDFNQVR 190 (222)
Q Consensus 129 ~~lle~g~~~l~qG~~e~A~~L~~eAL~i~eqV~G~~HpevA~~y~~LA~vy~~~Gd~~eAi 190 (222)
.-.+..|.++..+|++++|.+.+.+++.+ +|+...++..+|.+|..+|++++|+
T Consensus 47 ~~~~~~a~~~~~~~~~~~A~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~A~ 100 (131)
T 2vyi_A 47 VYFCNRAAAYSKLGNYAGAVQDCERAICI--------DPAYSKAYGRMGLALSSLNKHVEAV 100 (131)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHHHHhhchHHHHHHHHHHHhc--------CccCHHHHHHHHHHHHHhCCHHHHH
Confidence 34566799999999999999999999985 4555678999999999999999999
No 84
>4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A*
Probab=97.42 E-value=0.00012 Score=71.76 Aligned_cols=53 Identities=15% Similarity=0.139 Sum_probs=47.4
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHcCChhhHh
Q 027539 130 TLLESSKIALDKGKLEDAVNYGTKALARMIAVCGPYHRTTASTYSLLAVVLYHTGDFNQVR 190 (222)
Q Consensus 130 ~lle~g~~~l~qG~~e~A~~L~~eAL~i~eqV~G~~HpevA~~y~~LA~vy~~~Gd~~eAi 190 (222)
-..+.|.++..+|++++|++.|++|+.+ +|+-+.+|++||.+|..+|++++|+
T Consensus 79 a~~nLg~~l~~~g~~~~A~~~~~kAl~l--------~P~~~~a~~~Lg~~~~~~g~~~eAi 131 (723)
T 4gyw_A 79 AYSNMGNTLKEMQDVQGALQCYTRAIQI--------NPAFADAHSNLASIHKDSGNIPEAI 131 (723)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHh--------CCCCHHHHHHHHHHHHHcCCHHHHH
Confidence 3455699999999999999999999986 6778889999999999999999998
No 85
>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens}
Probab=97.42 E-value=0.00025 Score=60.29 Aligned_cols=72 Identities=14% Similarity=0.104 Sum_probs=62.1
Q ss_pred HHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHcCChhhHhhchHHhhhhhCCCCceE
Q 027539 128 GRTLLESSKIALDKGKLEDAVNYGTKALARMIAVCGPYHRTTASTYSLLAVVLYHTGDFNQVRQSSVVFQCQLGDSKSSI 207 (222)
Q Consensus 128 a~~lle~g~~~l~qG~~e~A~~L~~eAL~i~eqV~G~~HpevA~~y~~LA~vy~~~Gd~~eAi~~~~~~~~~~~~~~~a~ 207 (222)
+.-.+..|..+...|++++|.+++.+|+.+..+. ..+|..+.++..+|.+|..+|++++|+ .+. ++|+
T Consensus 47 ~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~--~~~~~~~~~~~~la~~~~~~g~~~~A~----~~~------~~al 114 (406)
T 3sf4_A 47 SAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTI--GDQLGEAKASGNLGNTLKVLGNFDEAI----VCC------QRHL 114 (406)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHHHHHTTCHHHHH----HHH------HHHH
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhc--cccHHHHHHHHHHHHHHHHcCCHHHHH----HHH------HHHH
Confidence 4567778999999999999999999999999887 568999999999999999999999999 655 4565
Q ss_pred EEee
Q 027539 208 IITS 211 (222)
Q Consensus 208 ~i~e 211 (222)
.+.+
T Consensus 115 ~~~~ 118 (406)
T 3sf4_A 115 DISR 118 (406)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 5443
No 86
>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B*
Probab=97.42 E-value=0.00025 Score=55.72 Aligned_cols=55 Identities=15% Similarity=0.187 Sum_probs=49.0
Q ss_pred HHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHcCChhhHh
Q 027539 128 GRTLLESSKIALDKGKLEDAVNYGTKALARMIAVCGPYHRTTASTYSLLAVVLYHTGDFNQVR 190 (222)
Q Consensus 128 a~~lle~g~~~l~qG~~e~A~~L~~eAL~i~eqV~G~~HpevA~~y~~LA~vy~~~Gd~~eAi 190 (222)
+.-.+..|.++..+|++++|++.|.+|+.+ +|+.+.++.++|.+|..+|++++|+
T Consensus 37 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~~--------~~~~~~~~~~lg~~~~~~~~~~~A~ 91 (213)
T 1hh8_A 37 SRICFNIGCMYTILKNMTEAEKAFTRSINR--------DKHLAVAYFQRGMLYYQTEKYDLAI 91 (213)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHTTCHHHHH
T ss_pred hHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--------CccchHHHHHHHHHHHHcccHHHHH
Confidence 345677799999999999999999999986 4666789999999999999999999
No 87
>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1
Probab=97.41 E-value=0.00015 Score=57.31 Aligned_cols=55 Identities=13% Similarity=0.081 Sum_probs=49.5
Q ss_pred HHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHcCChhhHh
Q 027539 128 GRTLLESSKIALDKGKLEDAVNYGTKALARMIAVCGPYHRTTASTYSLLAVVLYHTGDFNQVR 190 (222)
Q Consensus 128 a~~lle~g~~~l~qG~~e~A~~L~~eAL~i~eqV~G~~HpevA~~y~~LA~vy~~~Gd~~eAi 190 (222)
+.-....|.++...|++++|++.+.+++.+ +|+...++..+|.+|..+|++++|+
T Consensus 88 ~~~~~~la~~~~~~~~~~~A~~~~~~al~~--------~p~~~~~~~~lg~~~~~~~~~~~A~ 142 (198)
T 2fbn_A 88 ISCNLNLATCYNKNKDYPKAIDHASKVLKI--------DKNNVKALYKLGVANMYFGFLEEAK 142 (198)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------STTCHHHHHHHHHHHHHHTCHHHHH
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHHh--------CcccHHHHHHHHHHHHHcccHHHHH
Confidence 355667799999999999999999999987 5677789999999999999999999
No 88
>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A
Probab=97.41 E-value=0.0003 Score=52.47 Aligned_cols=55 Identities=16% Similarity=0.039 Sum_probs=48.3
Q ss_pred HHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHcCChhhHh
Q 027539 128 GRTLLESSKIALDKGKLEDAVNYGTKALARMIAVCGPYHRTTASTYSLLAVVLYHTGDFNQVR 190 (222)
Q Consensus 128 a~~lle~g~~~l~qG~~e~A~~L~~eAL~i~eqV~G~~HpevA~~y~~LA~vy~~~Gd~~eAi 190 (222)
+.-.+..|.++...|++++|.+.+.+++.+ +|+.+.++.++|.+|..+|++++|+
T Consensus 47 ~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~--------~~~~~~~~~~~a~~~~~~~~~~~A~ 101 (166)
T 1a17_A 47 AIYYGNRSLAYLRTECYGYALGDATRAIEL--------DKKYIKGYYRRAASNMALGKFRAAL 101 (166)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHTTCHHHHH
T ss_pred hHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--------CcccHHHHHHHHHHHHHhccHHHHH
Confidence 344566799999999999999999999986 4566778999999999999999999
No 89
>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A
Probab=97.40 E-value=0.00011 Score=62.22 Aligned_cols=74 Identities=15% Similarity=0.073 Sum_probs=59.8
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHhC---CCChHHHHHHHHHHHHHHHcCChhhHhhchHHhhhhhCCCCc
Q 027539 129 RTLLESSKIALDKGKLEDAVNYGTKALARMIAVCG---PYHRTTASTYSLLAVVLYHTGDFNQVRQSSVVFQCQLGDSKS 205 (222)
Q Consensus 129 ~~lle~g~~~l~qG~~e~A~~L~~eAL~i~eqV~G---~~HpevA~~y~~LA~vy~~~Gd~~eAi~~~~~~~~~~~~~~~ 205 (222)
.-....|.++..+|++++|.+.|.+++.+..+..| ..+|..+..+..||.+|..+|++++|. ... ++
T Consensus 286 ~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~----~~~------~~ 355 (368)
T 1fch_A 286 RSRYNLGISCINLGAHREAVEHFLEALNMQRKSRGPRGEGGAMSENIWSTLRLALSMLGQSDAYG----AAD------AR 355 (368)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTC------CCCCCHHHHHHHHHHHHHHTCGGGHH----HHH------TT
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCCCccccccchhhHHHHHHHHHHHHhCChHhHH----HhH------HH
Confidence 34555699999999999999999999999877643 456788999999999999999999999 777 66
Q ss_pred eEEEeee
Q 027539 206 SIIITSF 212 (222)
Q Consensus 206 a~~i~e~ 212 (222)
++.+-.+
T Consensus 356 ~l~~~~~ 362 (368)
T 1fch_A 356 DLSTLLT 362 (368)
T ss_dssp CHHHHHH
T ss_pred HHHHHHH
Confidence 6654433
No 90
>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster}
Probab=97.40 E-value=0.00034 Score=60.35 Aligned_cols=70 Identities=13% Similarity=0.151 Sum_probs=61.2
Q ss_pred HHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHcCChhhHhhchHHhhhhhCCCCceE
Q 027539 128 GRTLLESSKIALDKGKLEDAVNYGTKALARMIAVCGPYHRTTASTYSLLAVVLYHTGDFNQVRQSSVVFQCQLGDSKSSI 207 (222)
Q Consensus 128 a~~lle~g~~~l~qG~~e~A~~L~~eAL~i~eqV~G~~HpevA~~y~~LA~vy~~~Gd~~eAi~~~~~~~~~~~~~~~a~ 207 (222)
+.-.+..|.++..+|++++|.+++.+++.+.+++ ..+|..+.++..+|.+|..+|++++|+ .++ ++|+
T Consensus 86 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~--~~~~~~~~~~~~l~~~~~~~g~~~~A~----~~~------~~al 153 (411)
T 4a1s_A 86 SAIYSQLGNAYFYLGDYNKAMQYHKHDLTLAKSM--NDRLGEAKSSGNLGNTLKVMGRFDEAA----ICC------ERHL 153 (411)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHHHHHTTCHHHHH----HHH------HHHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHc--cCchHHHHHHHHHHHHHHHCCCHHHHH----HHH------HHHH
Confidence 4456677999999999999999999999999887 468999999999999999999999999 665 4565
Q ss_pred EE
Q 027539 208 II 209 (222)
Q Consensus 208 ~i 209 (222)
.+
T Consensus 154 ~~ 155 (411)
T 4a1s_A 154 TL 155 (411)
T ss_dssp HH
T ss_pred HH
Confidence 54
No 91
>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1
Probab=97.40 E-value=0.0002 Score=56.67 Aligned_cols=63 Identities=16% Similarity=0.109 Sum_probs=51.4
Q ss_pred hhHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHhCCCChH----------HHHHHHHHHHHHHHcCChhhHh
Q 027539 126 ADGRTLLESSKIALDKGKLEDAVNYGTKALARMIAVCGPYHRT----------TASTYSLLAVVLYHTGDFNQVR 190 (222)
Q Consensus 126 ~~a~~lle~g~~~l~qG~~e~A~~L~~eAL~i~eqV~G~~Hpe----------vA~~y~~LA~vy~~~Gd~~eAi 190 (222)
..+..+.+.|..+..+|++++|+++|.+|+.+..+ .+.++. .+.++.++|.+|..+|++++|+
T Consensus 36 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~--~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~ 108 (198)
T 2fbn_A 36 QSAFDIKEEGNEFFKKNEINEAIVKYKEALDFFIH--TEEWDDQILLDKKKNIEISCNLNLATCYNKNKDYPKAI 108 (198)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTTT--CTTCCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhc--ccccchhhHHHHHHHHHHHHHHHHHHHHHHhcCHHHHH
Confidence 45677889999999999999999999999986543 111111 2589999999999999999999
No 92
>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=97.39 E-value=0.00026 Score=51.82 Aligned_cols=55 Identities=13% Similarity=0.085 Sum_probs=48.7
Q ss_pred HHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHcCChhhHh
Q 027539 128 GRTLLESSKIALDKGKLEDAVNYGTKALARMIAVCGPYHRTTASTYSLLAVVLYHTGDFNQVR 190 (222)
Q Consensus 128 a~~lle~g~~~l~qG~~e~A~~L~~eAL~i~eqV~G~~HpevA~~y~~LA~vy~~~Gd~~eAi 190 (222)
..-.+..|.++...|++++|++.+.+++.+ +|+...++.++|.+|+.+|++++|+
T Consensus 65 ~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~--------~~~~~~~~~~~a~~~~~~~~~~~A~ 119 (148)
T 2dba_A 65 AVLHRNRAACHLKLEDYDKAETEASKAIEK--------DGGDVKALYRRSQALEKLGRLDQAV 119 (148)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------TSCCHHHHHHHHHHHHHHTCHHHHH
T ss_pred HHHHHHHHHHHHHHccHHHHHHHHHHHHhh--------CccCHHHHHHHHHHHHHcCCHHHHH
Confidence 455667799999999999999999999986 4555788999999999999999999
No 93
>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A
Probab=97.39 E-value=0.00038 Score=48.81 Aligned_cols=55 Identities=20% Similarity=0.375 Sum_probs=44.2
Q ss_pred HHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHcCChhhHh
Q 027539 128 GRTLLESSKIALDKGKLEDAVNYGTKALARMIAVCGPYHRTTASTYSLLAVVLYHTGDFNQVR 190 (222)
Q Consensus 128 a~~lle~g~~~l~qG~~e~A~~L~~eAL~i~eqV~G~~HpevA~~y~~LA~vy~~~Gd~~eAi 190 (222)
+......|..+...|++++|.+++.+++.. .|+....+..+|.+|..+|++++|+
T Consensus 9 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~--------~~~~~~~~~~la~~~~~~~~~~~A~ 63 (125)
T 1na0_A 9 AEAWYNLGNAYYKQGDYDEAIEYYQKALEL--------DPNNAEAWYNLGNAYYKQGDYDEAI 63 (125)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHH--------CcCcHHHHHHHHHHHHHhCCHHHHH
Confidence 455667788999999999999999998875 2444567888888899999988888
No 94
>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens}
Probab=97.38 E-value=0.00025 Score=60.25 Aligned_cols=62 Identities=15% Similarity=0.075 Sum_probs=49.8
Q ss_pred hHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHcCChhhHh
Q 027539 127 DGRTLLESSKIALDKGKLEDAVNYGTKALARMIAVCGPYHRTTASTYSLLAVVLYHTGDFNQVR 190 (222)
Q Consensus 127 ~a~~lle~g~~~l~qG~~e~A~~L~~eAL~i~eqV~G~~HpevA~~y~~LA~vy~~~Gd~~eAi 190 (222)
.+......|.++..+|++++|.+++.+++.+..+.- .++..+.++..||.+|..+|++++|+
T Consensus 266 ~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~--~~~~~~~~~~~la~~~~~~g~~~~A~ 327 (406)
T 3sf4_A 266 EAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELN--DRIGEGRACWSLGNAYTALGNHDQAM 327 (406)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTT--CHHHHHHHHHHHHHHHHHHTCHHHHH
T ss_pred HHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHhcC--CcHHHHHHHHHHHHHHHHcCCHHHHH
Confidence 355566678888888888888888888888887753 36778888888888888888888888
No 95
>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis}
Probab=97.38 E-value=0.00019 Score=49.68 Aligned_cols=54 Identities=15% Similarity=0.110 Sum_probs=47.1
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHhCCCChH--HHHHHHHHHHHHHHc-CChhhHh
Q 027539 129 RTLLESSKIALDKGKLEDAVNYGTKALARMIAVCGPYHRT--TASTYSLLAVVLYHT-GDFNQVR 190 (222)
Q Consensus 129 ~~lle~g~~~l~qG~~e~A~~L~~eAL~i~eqV~G~~Hpe--vA~~y~~LA~vy~~~-Gd~~eAi 190 (222)
.-.+..|.++..+|++++|.+.+.+++.+ .|+ ...++.++|.+|..+ |++++|+
T Consensus 41 ~~~~~~a~~~~~~~~~~~A~~~~~~a~~~--------~~~~~~~~~~~~l~~~~~~~~~~~~~A~ 97 (112)
T 2kck_A 41 KYWLMKGKALYNLERYEEAVDCYNYVINV--------IEDEYNKDVWAAKADALRYIEGKEVEAE 97 (112)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHT--------SCCTTCHHHHHHHHHHHTTCSSCSHHHH
T ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHHh--------CcccchHHHHHHHHHHHHHHhCCHHHHH
Confidence 34566799999999999999999999975 344 567899999999999 9999999
No 96
>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus}
Probab=97.36 E-value=0.00011 Score=59.65 Aligned_cols=58 Identities=17% Similarity=0.057 Sum_probs=48.7
Q ss_pred cCchhHHHHHHHHHHHHhc-----------CChHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHcCChhhHh
Q 027539 123 CTSADGRTLLESSKIALDK-----------GKLEDAVNYGTKALARMIAVCGPYHRTTASTYSLLAVVLYHTGDFNQVR 190 (222)
Q Consensus 123 p~s~~a~~lle~g~~~l~q-----------G~~e~A~~L~~eAL~i~eqV~G~~HpevA~~y~~LA~vy~~~Gd~~eAi 190 (222)
|..+.+. +..|.++..+ |++++|++.|.+++.+ .|+-+..+.++|.+|..+|++++|+
T Consensus 70 P~~~~a~--~~lg~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~--------~P~~~~~~~~lg~~~~~~g~~~~A~ 138 (217)
T 2pl2_A 70 PRYLGGY--MVLSEAYVALYRQAEDRERGKGYLEQALSVLKDAERV--------NPRYAPLHLQRGLVYALLGERDKAE 138 (217)
T ss_dssp TTCHHHH--HHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHTTCHHHHH
T ss_pred CCcHHHH--HHHHHHHHHhhhhhhhhcccccCHHHHHHHHHHHHHh--------CcccHHHHHHHHHHHHHcCChHHHH
Confidence 4444444 4459999999 9999999999999987 5677788999999999999999998
No 97
>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A
Probab=97.35 E-value=0.00045 Score=48.43 Aligned_cols=53 Identities=21% Similarity=0.383 Sum_probs=46.3
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHcCChhhHh
Q 027539 130 TLLESSKIALDKGKLEDAVNYGTKALARMIAVCGPYHRTTASTYSLLAVVLYHTGDFNQVR 190 (222)
Q Consensus 130 ~lle~g~~~l~qG~~e~A~~L~~eAL~i~eqV~G~~HpevA~~y~~LA~vy~~~Gd~~eAi 190 (222)
..+..|.++...|++++|..++.+++.+ +|+....+..+|.+|..+|++++|+
T Consensus 45 ~~~~la~~~~~~~~~~~A~~~~~~~~~~--------~~~~~~~~~~la~~~~~~~~~~~A~ 97 (125)
T 1na0_A 45 AWYNLGNAYYKQGDYDEAIEYYQKALEL--------DPNNAEAWYNLGNAYYKQGDYDEAI 97 (125)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHHh--------CCccHHHHHHHHHHHHHhcCHHHHH
Confidence 4566799999999999999999999875 3455678899999999999999999
No 98
>2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A
Probab=97.33 E-value=0.00046 Score=56.03 Aligned_cols=60 Identities=13% Similarity=0.168 Sum_probs=53.6
Q ss_pred hHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHcCChhhHhh
Q 027539 127 DGRTLLESSKIALDKGKLEDAVNYGTKALARMIAVCGPYHRTTASTYSLLAVVLYHTGDFNQVRQ 191 (222)
Q Consensus 127 ~a~~lle~g~~~l~qG~~e~A~~L~~eAL~i~eqV~G~~HpevA~~y~~LA~vy~~~Gd~~eAi~ 191 (222)
.+..+++.|..++.+|++++|.+.|.+++.. .|..|.....+..+|.+|+.+|++++|+.
T Consensus 3 ~~~~~~~~a~~~~~~g~~~~A~~~~~~~~~~-----~p~~~~~~~a~~~lg~~~~~~~~~~~A~~ 62 (225)
T 2yhc_A 3 PPNEIYATAQQKLQDGNWRQAITQLEALDNR-----YPFGPYSQQVQLDLIYAYYKNADLPLAQA 62 (225)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH-----CTTSTTHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-----CCCChHHHHHHHHHHHHHHhcCCHHHHHH
Confidence 3567888999999999999999999999875 47778888999999999999999999993
No 99
>1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3
Probab=97.32 E-value=0.00015 Score=67.03 Aligned_cols=76 Identities=13% Similarity=-0.005 Sum_probs=57.0
Q ss_pred HHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHcCChhhHhhchHH------------
Q 027539 128 GRTLLESSKIALDKGKLEDAVNYGTKALARMIAVCGPYHRTTASTYSLLAVVLYHTGDFNQVRQSSVV------------ 195 (222)
Q Consensus 128 a~~lle~g~~~l~qG~~e~A~~L~~eAL~i~eqV~G~~HpevA~~y~~LA~vy~~~Gd~~eAi~~~~~------------ 195 (222)
+.-....|.++..+|++++|++.|.+|+.+ +|+.+.++.++|.+|..+|++++|+.+...
T Consensus 40 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~l--------~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~p~~~~~~ 111 (477)
T 1wao_1 40 AIYYGNRSLAYLRTECYGYALGDATRAIEL--------DKKYIKGYYRRAASNMALGKFRAALRDYETVVKVKPHDKDAK 111 (477)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHS--------CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCTTHH
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHHh--------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHH
Confidence 444556699999999999999999999986 788899999999999999999999822110
Q ss_pred -----h--hhhhCCCCceEEEee
Q 027539 196 -----F--QCQLGDSKSSIIITS 211 (222)
Q Consensus 196 -----~--~~~~~~~~~a~~i~e 211 (222)
. +...|++++|+...+
T Consensus 112 ~~l~~~~~~~~~g~~~~A~~~~~ 134 (477)
T 1wao_1 112 MKYQECNKIVKQKAFERAIAGDE 134 (477)
T ss_dssp HHHHHHHHHHHHHHHCCC-----
T ss_pred HHHHHHHHHHHHHHHHHHhcccc
Confidence 1 234577788888777
No 100
>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A
Probab=97.31 E-value=0.00047 Score=56.76 Aligned_cols=52 Identities=10% Similarity=-0.026 Sum_probs=28.4
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHcCChhhHh
Q 027539 131 LLESSKIALDKGKLEDAVNYGTKALARMIAVCGPYHRTTASTYSLLAVVLYHTGDFNQVR 190 (222)
Q Consensus 131 lle~g~~~l~qG~~e~A~~L~~eAL~i~eqV~G~~HpevA~~y~~LA~vy~~~Gd~~eAi 190 (222)
.+..|..+..+|++++|..+|.+++.. +|+.+.++..+|.+|..+|++++|+
T Consensus 24 ~~~~a~~~~~~~~~~~A~~~~~~~~~~--------~~~~~~~~~~l~~~~~~~~~~~~A~ 75 (327)
T 3cv0_A 24 PMEEGLSMLKLANLAEAALAFEAVCQA--------APEREEAWRSLGLTQAENEKDGLAI 75 (327)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHHhccHHHHHHHHHHHHHh--------CCCCHHHHHHHHHHHHHcCCHHHHH
Confidence 445556666666666666666555542 2334445555555555555555555
No 101
>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A*
Probab=97.27 E-value=0.00019 Score=61.06 Aligned_cols=94 Identities=15% Similarity=0.127 Sum_probs=69.5
Q ss_pred HHHHHHceeeeccccCCCCCC-------CCCcCCcccccccccccccCchhHHHHHHHHHHHHhcCChHHHHHHHHHHHH
Q 027539 84 GLCHKVGLELVPRDYDMDCPN-------PFTRDDIVSMVPVCKHVGCTSADGRTLLESSKIALDKGKLEDAVNYGTKALA 156 (222)
Q Consensus 84 ~ic~K~GIQl~~rdY~f~~~~-------~F~~~DI~ni~PvVK~~~p~s~~a~~lle~g~~~l~qG~~e~A~~L~~eAL~ 156 (222)
++|.++||+-.+.-+.|.... +.+++.+ .-.++...|. .....++.|..+..+|++++|.++|.+++.
T Consensus 71 ~~~~~~~v~~~Pt~~~~~~G~~~~~~~g~~~~~~l---~~~l~~~lp~--~~~~~~~~a~~~~~~g~~~~A~~~~~~al~ 145 (287)
T 3qou_A 71 MIAAQFGLRAIPTVYLFQNGQPVDGFQGPQPEEAI---RALLDXVLPR--EEELXAQQAMQLMQESNYTDALPLLXDAWQ 145 (287)
T ss_dssp HHHHTTTCCSSSEEEEEETTEEEEEEESCCCHHHH---HHHHHHHSCC--HHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHcCCCCCCeEEEEECCEEEEEeeCCCCHHHH---HHHHHHHcCC--chhhHHHHHHHHHhCCCHHHHHHHHHHHHH
Confidence 788899998777666553221 2222222 2334444443 455678899999999999999999999997
Q ss_pred HHHHHhCCCChHHHHHHHHHHHHHHHcCChhhHh
Q 027539 157 RMIAVCGPYHRTTASTYSLLAVVLYHTGDFNQVR 190 (222)
Q Consensus 157 i~eqV~G~~HpevA~~y~~LA~vy~~~Gd~~eAi 190 (222)
+ +|+-+..+..||.+|..+|++++|+
T Consensus 146 ~--------~P~~~~a~~~la~~~~~~g~~~~A~ 171 (287)
T 3qou_A 146 L--------SNQNGEIGLLLAETLIALNRSEDAE 171 (287)
T ss_dssp H--------TTSCHHHHHHHHHHHHHTTCHHHHH
T ss_pred h--------CCcchhHHHHHHHHHHHCCCHHHHH
Confidence 5 4555678999999999999999999
No 102
>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1
Probab=97.27 E-value=0.00039 Score=56.10 Aligned_cols=57 Identities=21% Similarity=0.221 Sum_probs=49.4
Q ss_pred hhHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHcCChhhHh
Q 027539 126 ADGRTLLESSKIALDKGKLEDAVNYGTKALARMIAVCGPYHRTTASTYSLLAVVLYHTGDFNQVR 190 (222)
Q Consensus 126 ~~a~~lle~g~~~l~qG~~e~A~~L~~eAL~i~eqV~G~~HpevA~~y~~LA~vy~~~Gd~~eAi 190 (222)
..+...+..|..+..+|++++|.++|.+++.+ +|+.+.++..||.+|..+|++++|+
T Consensus 41 ~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~--------~~~~~~~~~~la~~~~~~~~~~~A~ 97 (275)
T 1xnf_A 41 ERAQLLYERGVLYDSLGLRALARNDFSQALAI--------RPDMPEVFNYLGIYLTQAGNFDAAY 97 (275)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------CCCCHHHHHHHHHHHHHTTCHHHHH
T ss_pred hhHHHHHHHHHHHHHcccHHHHHHHHHHHHHc--------CCCcHHHHHHHHHHHHHccCHHHHH
Confidence 34566777799999999999999999999986 4556678999999999999999999
No 103
>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus}
Probab=97.27 E-value=0.0004 Score=59.20 Aligned_cols=56 Identities=14% Similarity=0.063 Sum_probs=42.3
Q ss_pred hHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHcCChhhHh
Q 027539 127 DGRTLLESSKIALDKGKLEDAVNYGTKALARMIAVCGPYHRTTASTYSLLAVVLYHTGDFNQVR 190 (222)
Q Consensus 127 ~a~~lle~g~~~l~qG~~e~A~~L~~eAL~i~eqV~G~~HpevA~~y~~LA~vy~~~Gd~~eAi 190 (222)
++......|.++..+|++++|.++|.+++.+ +|+.+.++++||.+|..+|++++|+
T Consensus 212 ~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~--------~p~~~~~~~~l~~~~~~~g~~~~A~ 267 (365)
T 4eqf_A 212 DPDLQTGLGVLFHLSGEFNRAIDAFNAALTV--------RPEDYSLWNRLGATLANGDRSEEAV 267 (365)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHTTCHHHHH
T ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--------CCCCHHHHHHHHHHHHHcCCHHHHH
Confidence 4445566688888888888888888888875 4555667788888888888887777
No 104
>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus}
Probab=97.27 E-value=0.00027 Score=56.91 Aligned_cols=50 Identities=10% Similarity=0.027 Sum_probs=46.2
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHcCChhhHh
Q 027539 133 ESSKIALDKGKLEDAVNYGTKALARMIAVCGPYHRTTASTYSLLAVVLYHTGDFNQVR 190 (222)
Q Consensus 133 e~g~~~l~qG~~e~A~~L~~eAL~i~eqV~G~~HpevA~~y~~LA~vy~~~Gd~~eAi 190 (222)
+.|.++..+|++++|++.|.+++.+ +|+-+.++.+||.+|..+|++++|+
T Consensus 59 ~lg~~~~~~g~~~~A~~~~~~al~~--------~p~~~~~~~~lg~~~~~~g~~~~A~ 108 (208)
T 3urz_A 59 ELALAYKKNRNYDKAYLFYKELLQK--------APNNVDCLEACAEMQVCRGQEKDAL 108 (208)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHHTCHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHH--------CCCCHHHHHHHHHHHHHcCCHHHHH
Confidence 3799999999999999999999986 5777788999999999999999999
No 105
>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B*
Probab=97.26 E-value=0.0002 Score=56.38 Aligned_cols=62 Identities=8% Similarity=0.103 Sum_probs=51.6
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHHHHHHH--------HhCCCChHHHHHHHHHHHHHHHcCChhhHh
Q 027539 129 RTLLESSKIALDKGKLEDAVNYGTKALARMIA--------VCGPYHRTTASTYSLLAVVLYHTGDFNQVR 190 (222)
Q Consensus 129 ~~lle~g~~~l~qG~~e~A~~L~~eAL~i~eq--------V~G~~HpevA~~y~~LA~vy~~~Gd~~eAi 190 (222)
.-.+..|.++..+|++++|++.|.+++.+... .-...+|..+.++.++|.+|+.+|++++|+
T Consensus 72 ~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~ 141 (213)
T 1hh8_A 72 VAYFQRGMLYYQTEKYDLAIKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAE 141 (213)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHHHHcccHHHHHHHHHHHHHhCCCccHHHHHHhccccCccchHHHHHHHHHHHHccCHHHHH
Confidence 34566799999999999999999999986422 111267788899999999999999999999
No 106
>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii}
Probab=97.26 E-value=0.00039 Score=56.33 Aligned_cols=68 Identities=21% Similarity=0.260 Sum_probs=56.3
Q ss_pred hHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHcCChhhHhhchHHhhhhhCCCCce
Q 027539 127 DGRTLLESSKIALDKGKLEDAVNYGTKALARMIAVCGPYHRTTASTYSLLAVVLYHTGDFNQVRQSSVVFQCQLGDSKSS 206 (222)
Q Consensus 127 ~a~~lle~g~~~l~qG~~e~A~~L~~eAL~i~eqV~G~~HpevA~~y~~LA~vy~~~Gd~~eAi~~~~~~~~~~~~~~~a 206 (222)
.+......|.++...|++++|++.|.+++.+ +|+.+.++..+|.+|..+|++++|+ .+. ++|
T Consensus 73 ~~~~~~~lg~~~~~~~~~~~A~~~~~~a~~~--------~~~~~~~~~~l~~~~~~~~~~~~A~----~~~------~~a 134 (272)
T 3u4t_A 73 KSADFEYYGKILMKKGQDSLAIQQYQAAVDR--------DTTRLDMYGQIGSYFYNKGNFPLAI----QYM------EKQ 134 (272)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------STTCTHHHHHHHHHHHHTTCHHHHH----HHH------GGG
T ss_pred HHHHHHHHHHHHHHcccHHHHHHHHHHHHhc--------CcccHHHHHHHHHHHHHccCHHHHH----HHH------HHH
Confidence 3444567799999999999999999999984 5556678999999999999999999 777 677
Q ss_pred EEEeee
Q 027539 207 IIITSF 212 (222)
Q Consensus 207 ~~i~e~ 212 (222)
+.+...
T Consensus 135 l~~~~~ 140 (272)
T 3u4t_A 135 IRPTTT 140 (272)
T ss_dssp CCSSCC
T ss_pred hhcCCC
Confidence 766443
No 107
>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae}
Probab=97.25 E-value=0.00082 Score=53.31 Aligned_cols=61 Identities=13% Similarity=0.173 Sum_probs=54.3
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHcCChhhHh
Q 027539 129 RTLLESSKIALDKGKLEDAVNYGTKALARMIAVCGPYHRTTASTYSLLAVVLYHTGDFNQVR 190 (222)
Q Consensus 129 ~~lle~g~~~l~qG~~e~A~~L~~eAL~i~eqV~G~~HpevA~~y~~LA~vy~~~Gd~~eAi 190 (222)
.-.+..|.++...|++++|.+.+.+++.+..+ .++.++..+.++..+|.+|..+|++++|+
T Consensus 39 ~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~-~~~~~~~~~~~~~~l~~~~~~~~~~~~A~ 99 (258)
T 3uq3_A 39 TYLNNRAAAEYEKGEYETAISTLNDAVEQGRE-MRADYKVISKSFARIGNAYHKLGDLKKTI 99 (258)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH-TTCCHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHHHHcccHHHHHHHHHHHHHhCcc-cccchHHHHHHHHHHHHHHHHcccHHHHH
Confidence 44667799999999999999999999998765 35677888999999999999999999999
No 108
>4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis}
Probab=97.24 E-value=0.00046 Score=55.20 Aligned_cols=58 Identities=14% Similarity=0.018 Sum_probs=40.7
Q ss_pred hhHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHcCChhhHh
Q 027539 126 ADGRTLLESSKIALDKGKLEDAVNYGTKALARMIAVCGPYHRTTASTYSLLAVVLYHTGDFNQVR 190 (222)
Q Consensus 126 ~~a~~lle~g~~~l~qG~~e~A~~L~~eAL~i~eqV~G~~HpevA~~y~~LA~vy~~~Gd~~eAi 190 (222)
.+...++..|..+..+|++++|++.|.+++.+.. +.++ ..+.++|.+|+.+|++++|+
T Consensus 5 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~----~~~~---~~~~~~~~~~~~~~~~~~A~ 62 (228)
T 4i17_A 5 TDPNQLKNEGNDALNAKNYAVAFEKYSEYLKLTN----NQDS---VTAYNCGVCADNIKKYKEAA 62 (228)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTT----TCCH---HHHHHHHHHHHHTTCHHHHH
T ss_pred cCHHHHHHHHHHHHHccCHHHHHHHHHHHHhccC----CCCc---HHHHHHHHHHHHhhcHHHHH
Confidence 4457778888888888888888888888887642 0122 34555777777777777776
No 109
>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens}
Probab=97.22 E-value=0.00039 Score=57.33 Aligned_cols=62 Identities=15% Similarity=0.144 Sum_probs=54.4
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHhCCCC-hHHHHHHHHHHHHHHHcCChhhHh
Q 027539 129 RTLLESSKIALDKGKLEDAVNYGTKALARMIAVCGPYH-RTTASTYSLLAVVLYHTGDFNQVR 190 (222)
Q Consensus 129 ~~lle~g~~~l~qG~~e~A~~L~~eAL~i~eqV~G~~H-pevA~~y~~LA~vy~~~Gd~~eAi 190 (222)
......|.++..+|++++|.+++.+++.+..+..++.. |..+.++.++|.+|..+|++++|+
T Consensus 194 ~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~ 256 (330)
T 3hym_B 194 FVMHEVGVVAFQNGEWKTAEKWFLDALEKIKAIGNEVTVDKWEPLLNNLGHVCRKLKKYAEAL 256 (330)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTTSCSCTTTTCCHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHHHHcccHHHHHHHHHHHHHHhhhccccccccHHHHHHHHHHHHHHHhcCHHHHH
Confidence 44566799999999999999999999999888776655 666789999999999999999998
No 110
>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A
Probab=97.21 E-value=0.00034 Score=61.15 Aligned_cols=55 Identities=18% Similarity=0.116 Sum_probs=50.0
Q ss_pred HHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHcCChhhHh
Q 027539 128 GRTLLESSKIALDKGKLEDAVNYGTKALARMIAVCGPYHRTTASTYSLLAVVLYHTGDFNQVR 190 (222)
Q Consensus 128 a~~lle~g~~~l~qG~~e~A~~L~~eAL~i~eqV~G~~HpevA~~y~~LA~vy~~~Gd~~eAi 190 (222)
+.-.++.|.++..+|++++|++.|.+|+.+ .|+-+.+|.++|.+|..+|++++|+
T Consensus 196 ~~~~~nla~~~~~~g~~~~A~~~~~~al~~--------~p~~~~a~~~lg~~~~~~g~~~~A~ 250 (336)
T 1p5q_A 196 LASHLNLAMCHLKLQAFSAAIESCNKALEL--------DSNNEKGLSRRGEAHLAVNDFELAR 250 (336)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--------CCCcHHHHHHHHHHHHHCCCHHHHH
Confidence 456677899999999999999999999987 5677889999999999999999999
No 111
>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A
Probab=97.19 E-value=0.00063 Score=57.44 Aligned_cols=56 Identities=16% Similarity=0.081 Sum_probs=46.3
Q ss_pred hHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHcCChhhHh
Q 027539 127 DGRTLLESSKIALDKGKLEDAVNYGTKALARMIAVCGPYHRTTASTYSLLAVVLYHTGDFNQVR 190 (222)
Q Consensus 127 ~a~~lle~g~~~l~qG~~e~A~~L~~eAL~i~eqV~G~~HpevA~~y~~LA~vy~~~Gd~~eAi 190 (222)
++......|.++..+|++++|.++|.+++.+ +|+.+.++.++|.+|..+|++++|+
T Consensus 216 ~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~--------~~~~~~~~~~l~~~~~~~g~~~~A~ 271 (368)
T 1fch_A 216 DPDVQCGLGVLFNLSGEYDKAVDCFTAALSV--------RPNDYLLWNKLGATLANGNQSEEAV 271 (368)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHTTCHHHHH
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--------CcCCHHHHHHHHHHHHHcCCHHHHH
Confidence 4556667799999999999999999999876 4566678888888888899888888
No 112
>4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis}
Probab=97.18 E-value=0.00055 Score=54.74 Aligned_cols=54 Identities=15% Similarity=0.055 Sum_probs=48.7
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHcCChhhHh
Q 027539 129 RTLLESSKIALDKGKLEDAVNYGTKALARMIAVCGPYHRTTASTYSLLAVVLYHTGDFNQVR 190 (222)
Q Consensus 129 ~~lle~g~~~l~qG~~e~A~~L~~eAL~i~eqV~G~~HpevA~~y~~LA~vy~~~Gd~~eAi 190 (222)
...+..|.++...|++++|++.|.+|+. .+|+.+.++..+|.+|..+|++++|+
T Consensus 43 ~~~~~~~~~~~~~~~~~~A~~~~~~al~--------~~p~~~~~~~~l~~~~~~~~~~~~A~ 96 (228)
T 4i17_A 43 VTAYNCGVCADNIKKYKEAADYFDIAIK--------KNYNLANAYIGKSAAYRDMKNNQEYI 96 (228)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHH--------TTCSHHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHHHHhhcHHHHHHHHHHHHH--------hCcchHHHHHHHHHHHHHcccHHHHH
Confidence 4455579999999999999999999994 57888899999999999999999999
No 113
>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus}
Probab=97.18 E-value=0.00051 Score=55.64 Aligned_cols=53 Identities=17% Similarity=0.102 Sum_probs=47.7
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHcCChhhHh
Q 027539 130 TLLESSKIALDKGKLEDAVNYGTKALARMIAVCGPYHRTTASTYSLLAVVLYHTGDFNQVR 190 (222)
Q Consensus 130 ~lle~g~~~l~qG~~e~A~~L~~eAL~i~eqV~G~~HpevA~~y~~LA~vy~~~Gd~~eAi 190 (222)
..+..|..+..+|++++|...|.+++. ..|+-+..+.++|.+|..+|++++|+
T Consensus 7 ~~~~lg~~~~~~g~~~~A~~~~~~al~--------~~p~~~~a~~~lg~~~~~~g~~~~A~ 59 (217)
T 2pl2_A 7 NPLRLGVQLYALGRYDAALTLFERALK--------ENPQDPEALYWLARTQLKLGLVNPAL 59 (217)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHT--------TSSSCHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHH--------hCCCCHHHHHHHHHHHHHcCCHHHHH
Confidence 456679999999999999999999985 46777889999999999999999999
No 114
>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus}
Probab=97.17 E-value=0.00035 Score=59.56 Aligned_cols=78 Identities=10% Similarity=0.017 Sum_probs=58.3
Q ss_pred HHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHhCCCChHH----HHHHHHHHHHHHHcCChhhHhhchHHhhhhhCCC
Q 027539 128 GRTLLESSKIALDKGKLEDAVNYGTKALARMIAVCGPYHRTT----ASTYSLLAVVLYHTGDFNQVRQSSVVFQCQLGDS 203 (222)
Q Consensus 128 a~~lle~g~~~l~qG~~e~A~~L~~eAL~i~eqV~G~~Hpev----A~~y~~LA~vy~~~Gd~~eAi~~~~~~~~~~~~~ 203 (222)
+......|.++..+|++++|.+.|.+|+.+..+..|+.|++. +..+..|+.++..+|+.+.|. ...
T Consensus 281 ~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~----~~~------ 350 (365)
T 4eqf_A 281 IRSRYNLGISCINLGAYREAVSNFLTALSLQRKSRNQQQVPHPAISGNIWAALRIALSLMDQPELFQ----AAN------ 350 (365)
T ss_dssp HHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHCC------------CHHHHHHHHHHHHHTCHHHHH----HHH------
T ss_pred hHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccCCCcccchhhhHHHHHHHHHHHHHHcCcHHHHH----HHH------
Confidence 344556699999999999999999999999999999888776 789999999999999999998 666
Q ss_pred CceEEEeeeech
Q 027539 204 KSSIIITSFCTE 215 (222)
Q Consensus 204 ~~a~~i~e~~~~ 215 (222)
++++.+.++..+
T Consensus 351 ~~~l~~~~~~~~ 362 (365)
T 4eqf_A 351 LGDLDVLLRAFN 362 (365)
T ss_dssp TTCCGGGTTTTT
T ss_pred HhhHHHHHHhcC
Confidence 556555544433
No 115
>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A
Probab=97.16 E-value=0.00036 Score=56.03 Aligned_cols=55 Identities=22% Similarity=0.128 Sum_probs=46.5
Q ss_pred HHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHcCChhhHh
Q 027539 128 GRTLLESSKIALDKGKLEDAVNYGTKALARMIAVCGPYHRTTASTYSLLAVVLYHTGDFNQVR 190 (222)
Q Consensus 128 a~~lle~g~~~l~qG~~e~A~~L~~eAL~i~eqV~G~~HpevA~~y~~LA~vy~~~Gd~~eAi 190 (222)
+.-.+..|..+..+|++++|.++|.+++.+ .|+.+.++..+|.+|..+|++++|+
T Consensus 37 ~~~~~~~a~~~~~~~~~~~A~~~~~~al~~--------~~~~~~~~~~la~~~~~~~~~~~A~ 91 (252)
T 2ho1_A 37 RDAYIQLGLGYLQRGNTEQAKVPLRKALEI--------DPSSADAHAALAVVFQTEMEPKLAD 91 (252)
T ss_dssp HHHHHHHHHHHHHTTCTGGGHHHHHHHHHH--------CTTCHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHhc--------CCChHHHHHHHHHHHHHcCCHHHHH
Confidence 556677799999999999999999999876 3556778888999999999998888
No 116
>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A
Probab=97.16 E-value=0.00017 Score=63.06 Aligned_cols=65 Identities=12% Similarity=0.079 Sum_probs=53.5
Q ss_pred hhHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHh-------CCCChHHHHHHHHHHHHHHHcCChhhHh
Q 027539 126 ADGRTLLESSKIALDKGKLEDAVNYGTKALARMIAVC-------GPYHRTTASTYSLLAVVLYHTGDFNQVR 190 (222)
Q Consensus 126 ~~a~~lle~g~~~l~qG~~e~A~~L~~eAL~i~eqV~-------G~~HpevA~~y~~LA~vy~~~Gd~~eAi 190 (222)
..+....+.|..+..+|++++|++.|.+|+.+...-. ....|..+.+|.+||.+|..+|++++|+
T Consensus 145 ~~a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~ 216 (336)
T 1p5q_A 145 EQSTIVKERGTVYFKEGKYKQALLQYKKIVSWLEYESSFSNEEAQKAQALRLASHLNLAMCHLKLQAFSAAI 216 (336)
T ss_dssp HHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTTCCCCCSHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHhhccccCChHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHH
Confidence 3566778889999999999999999999998864321 1123555899999999999999999999
No 117
>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus}
Probab=97.14 E-value=0.00063 Score=56.47 Aligned_cols=56 Identities=25% Similarity=0.202 Sum_probs=45.5
Q ss_pred hHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHcCChhhHh
Q 027539 127 DGRTLLESSKIALDKGKLEDAVNYGTKALARMIAVCGPYHRTTASTYSLLAVVLYHTGDFNQVR 190 (222)
Q Consensus 127 ~a~~lle~g~~~l~qG~~e~A~~L~~eAL~i~eqV~G~~HpevA~~y~~LA~vy~~~Gd~~eAi 190 (222)
+++..+..|..+..+|++++|+++|.+++.. +|+.+.++..+|.+|..+|++++|+
T Consensus 2 ~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~--------~p~~~~~~~~~a~~~~~~~~~~~A~ 57 (359)
T 3ieg_A 2 DVEKHLELGKKLLAAGQLADALSQFHAAVDG--------DPDNYIAYYRRATVFLAMGKSKAAL 57 (359)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHHTCHHHHH
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh--------CcccHHHHHHHHHHHHHccCHHHHH
Confidence 5667788899999999999999999888874 4445567888888888888888888
No 118
>2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus}
Probab=97.13 E-value=0.00032 Score=54.69 Aligned_cols=57 Identities=18% Similarity=0.145 Sum_probs=50.6
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHcCChhhHhhchHHhh
Q 027539 129 RTLLESSKIALDKGKLEDAVNYGTKALARMIAVCGPYHRTTASTYSLLAVVLYHTGDFNQVRQSSVVFQ 197 (222)
Q Consensus 129 ~~lle~g~~~l~qG~~e~A~~L~~eAL~i~eqV~G~~HpevA~~y~~LA~vy~~~Gd~~eAi~~~~~~~ 197 (222)
+..++.|..++.+|++++|...|.+++.+ +|+-+..+..||.+|..+|++++|+ .+.
T Consensus 7 ~~~~~~a~~~~~~g~~~~A~~~~~~al~~--------~P~~~~a~~~la~~~~~~g~~~~A~----~~~ 63 (176)
T 2r5s_A 7 EQLLKQVSELLQQGEHAQALNVIQTLSDE--------LQSRGDVKLAKADCLLETKQFELAQ----ELL 63 (176)
T ss_dssp TTHHHHHHHHHHTTCHHHHHHHHHTSCHH--------HHTSHHHHHHHHHHHHHTTCHHHHH----HHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHH--------CCCcHHHHHHHHHHHHHCCCHHHHH----HHH
Confidence 45788899999999999999999999874 5777788999999999999999999 555
No 119
>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1
Probab=97.13 E-value=0.00067 Score=54.67 Aligned_cols=53 Identities=13% Similarity=0.016 Sum_probs=47.1
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHcCChhhHh
Q 027539 130 TLLESSKIALDKGKLEDAVNYGTKALARMIAVCGPYHRTTASTYSLLAVVLYHTGDFNQVR 190 (222)
Q Consensus 130 ~lle~g~~~l~qG~~e~A~~L~~eAL~i~eqV~G~~HpevA~~y~~LA~vy~~~Gd~~eAi 190 (222)
-....|.++...|++++|.++|.+++.+ +|+-..++..+|.+|..+|++++|+
T Consensus 79 ~~~~la~~~~~~~~~~~A~~~~~~al~~--------~~~~~~~~~~la~~~~~~g~~~~A~ 131 (275)
T 1xnf_A 79 VFNYLGIYLTQAGNFDAAYEAFDSVLEL--------DPTYNYAHLNRGIALYYGGRDKLAQ 131 (275)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHH--------CTTCTHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHhc--------CccccHHHHHHHHHHHHhccHHHHH
Confidence 3555699999999999999999999986 4555688999999999999999999
No 120
>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae}
Probab=97.12 E-value=0.00059 Score=54.19 Aligned_cols=53 Identities=9% Similarity=0.066 Sum_probs=37.6
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHcCChhhHh
Q 027539 130 TLLESSKIALDKGKLEDAVNYGTKALARMIAVCGPYHRTTASTYSLLAVVLYHTGDFNQVR 190 (222)
Q Consensus 130 ~lle~g~~~l~qG~~e~A~~L~~eAL~i~eqV~G~~HpevA~~y~~LA~vy~~~Gd~~eAi 190 (222)
-.+..|.++...|++++|.+.+.+++.+ .|+.+.++..+|.+|..+|++++|+
T Consensus 175 ~~~~l~~~~~~~~~~~~A~~~~~~al~~--------~~~~~~~~~~l~~~~~~~g~~~~A~ 227 (258)
T 3uq3_A 175 GYSNRAAALAKLMSFPEAIADCNKAIEK--------DPNFVRAYIRKATAQIAVKEYASAL 227 (258)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHHh--------CHHHHHHHHHHHHHHHHHhhHHHHH
Confidence 3445577777777777777777777764 3455566777777777777777777
No 121
>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens}
Probab=97.12 E-value=0.00048 Score=56.76 Aligned_cols=65 Identities=20% Similarity=0.270 Sum_probs=54.5
Q ss_pred HHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHcCChhhHhhchHHhhhhhCCCCceE
Q 027539 128 GRTLLESSKIALDKGKLEDAVNYGTKALARMIAVCGPYHRTTASTYSLLAVVLYHTGDFNQVRQSSVVFQCQLGDSKSSI 207 (222)
Q Consensus 128 a~~lle~g~~~l~qG~~e~A~~L~~eAL~i~eqV~G~~HpevA~~y~~LA~vy~~~Gd~~eAi~~~~~~~~~~~~~~~a~ 207 (222)
+.-....|.++...|++++|.+.+.+++.+ +|+.+.++.+||.+|..+|++++|+ .+. ++|+
T Consensus 236 ~~~~~~la~~~~~~g~~~~A~~~~~~a~~~--------~~~~~~~~~~la~~~~~~g~~~~A~----~~~------~~al 297 (330)
T 3hym_B 236 EPLLNNLGHVCRKLKKYAEALDYHRQALVL--------IPQNASTYSAIGYIHSLMGNFENAV----DYF------HTAL 297 (330)
T ss_dssp CHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------STTCSHHHHHHHHHHHHHTCHHHHH----HHH------HTTT
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHhh--------CccchHHHHHHHHHHHHhccHHHHH----HHH------HHHH
Confidence 445566799999999999999999999987 4566778999999999999999999 666 5666
Q ss_pred EEe
Q 027539 208 IIT 210 (222)
Q Consensus 208 ~i~ 210 (222)
.+.
T Consensus 298 ~~~ 300 (330)
T 3hym_B 298 GLR 300 (330)
T ss_dssp TTC
T ss_pred ccC
Confidence 554
No 122
>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A
Probab=97.11 E-value=0.00068 Score=47.76 Aligned_cols=51 Identities=22% Similarity=0.401 Sum_probs=32.1
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHcCChhhHh
Q 027539 132 LESSKIALDKGKLEDAVNYGTKALARMIAVCGPYHRTTASTYSLLAVVLYHTGDFNQVR 190 (222)
Q Consensus 132 le~g~~~l~qG~~e~A~~L~~eAL~i~eqV~G~~HpevA~~y~~LA~vy~~~Gd~~eAi 190 (222)
+..|..+...|++++|..++.+++.. +|+...++..+|.++...|++++|+
T Consensus 5 ~~l~~~~~~~~~~~~A~~~~~~~~~~--------~~~~~~~~~~~a~~~~~~~~~~~A~ 55 (136)
T 2fo7_A 5 YNLGNAYYKQGDYDEAIEYYQKALEL--------DPRSAEAWYNLGNAYYKQGDYDEAI 55 (136)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHHTCHHHHH
T ss_pred HHHHHHHHHcCcHHHHHHHHHHHHHc--------CCcchhHHHHHHHHHHHhcCHHHHH
Confidence 34466666777777777777666653 2333455666666666666666666
No 123
>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A
Probab=97.10 E-value=0.0009 Score=53.61 Aligned_cols=55 Identities=13% Similarity=0.099 Sum_probs=46.5
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHcCChhhHh
Q 027539 130 TLLESSKIALDKGKLEDAVNYGTKALARMIAVCGPYHRTTASTYSLLAVVLYHTGDFNQVR 190 (222)
Q Consensus 130 ~lle~g~~~l~qG~~e~A~~L~~eAL~i~eqV~G~~HpevA~~y~~LA~vy~~~Gd~~eAi 190 (222)
-....|..+..+|++++|.+++.+++. .+.+|+.+..+..+|.+|..+|++++|+
T Consensus 107 ~~~~la~~~~~~g~~~~A~~~~~~~~~------~~~~~~~~~~~~~la~~~~~~g~~~~A~ 161 (252)
T 2ho1_A 107 VLNNYGGFLYEQKRYEEAYQRLLEASQ------DTLYPERSRVFENLGLVSLQMKKPAQAK 161 (252)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHTT------CTTCTTHHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHh------CccCcccHHHHHHHHHHHHHcCCHHHHH
Confidence 345568889999999999999888876 5678888889999999999999998888
No 124
>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans}
Probab=97.08 E-value=0.00021 Score=52.14 Aligned_cols=46 Identities=26% Similarity=0.303 Sum_probs=37.1
Q ss_pred hcCChHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHcCChhhHh
Q 027539 140 DKGKLEDAVNYGTKALARMIAVCGPYHRTTASTYSLLAVVLYHTGDFNQVR 190 (222)
Q Consensus 140 ~qG~~e~A~~L~~eAL~i~eqV~G~~HpevA~~y~~LA~vy~~~Gd~~eAi 190 (222)
.+|++++|++.|.+|+.+ ++..|+.+.++.+||.+|+.+|++++|+
T Consensus 2 ~~g~~~~A~~~~~~al~~-----~~~~p~~~~~~~~lg~~~~~~~~~~~A~ 47 (117)
T 3k9i_A 2 VLGLEAQAVPYYEKAIAS-----GLQGKDLAECYLGLGSTFRTLGEYRKAE 47 (117)
T ss_dssp -----CCCHHHHHHHHSS-----CCCHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred CCCcHHHHHHHHHHHHHc-----CCCCccHHHHHHHHHHHHHHcCCHHHHH
Confidence 468899999999999873 3447999999999999999999999999
No 125
>1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1
Probab=97.08 E-value=0.00013 Score=59.24 Aligned_cols=69 Identities=13% Similarity=0.095 Sum_probs=48.4
Q ss_pred ccCchhHHHHHHHHHHHHhcCChH---HHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHcC-----------Chh
Q 027539 122 GCTSADGRTLLESSKIALDKGKLE---DAVNYGTKALARMIAVCGPYHRTTASTYSLLAVVLYHTG-----------DFN 187 (222)
Q Consensus 122 ~p~s~~a~~lle~g~~~l~qG~~e---~A~~L~~eAL~i~eqV~G~~HpevA~~y~~LA~vy~~~G-----------d~~ 187 (222)
+|..+++...| |.++...|+++ +|++++.+|+..|++..- +.|+-+.+|++||.+|+.+| +++
T Consensus 32 ~P~~aea~~n~--G~~l~~l~~~~~g~~al~~~~eAi~~le~AL~-ldP~~~~A~~~LG~ay~~lg~l~P~~~~a~g~~~ 108 (158)
T 1zu2_A 32 NPLDADNLTRW--GGVLLELSQFHSISDAKQMIQEAITKFEEALL-IDPKKDEAVWCIGNAYTSFAFLTPDETEAKHNFD 108 (158)
T ss_dssp CTTCHHHHHHH--HHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHH-HCTTCHHHHHHHHHHHHHHHHHCCCHHHHHHHHH
T ss_pred CCCCHHHHHHH--HHHHHHhcccchhhhhHhHHHHHHHHHHHHHH-hCcCcHHHHHHHHHHHHHhcccCcchhhhhccHH
Confidence 44555555544 88888877654 455666666666666552 36777788999999999986 899
Q ss_pred hHhhchHHhh
Q 027539 188 QVRQSSVVFQ 197 (222)
Q Consensus 188 eAi~~~~~~~ 197 (222)
+|+ .++
T Consensus 109 eA~----~~~ 114 (158)
T 1zu2_A 109 LAT----QFF 114 (158)
T ss_dssp HHH----HHH
T ss_pred HHH----HHH
Confidence 999 555
No 126
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2
Probab=97.05 E-value=0.00052 Score=58.26 Aligned_cols=54 Identities=11% Similarity=0.059 Sum_probs=48.4
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHcCChhhHh
Q 027539 129 RTLLESSKIALDKGKLEDAVNYGTKALARMIAVCGPYHRTTASTYSLLAVVLYHTGDFNQVR 190 (222)
Q Consensus 129 ~~lle~g~~~l~qG~~e~A~~L~~eAL~i~eqV~G~~HpevA~~y~~LA~vy~~~Gd~~eAi 190 (222)
.-....|.++...|++++|++.+.+|+.+ +|+...++.++|.+|..+|++++|+
T Consensus 39 ~~~~~la~~~~~~~~~~~A~~~~~~al~~--------~p~~~~~~~~lg~~~~~~g~~~~A~ 92 (281)
T 2c2l_A 39 VYYTNRALCYLKMQQPEQALADCRRALEL--------DGQSVKAHFFLGQCQLEMESYDEAI 92 (281)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHTTS--------CTTCHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHh--------CCCCHHHHHHHHHHHHHcCCHHHHH
Confidence 34556699999999999999999999964 6778899999999999999999999
No 127
>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A
Probab=97.03 E-value=0.0014 Score=49.01 Aligned_cols=54 Identities=9% Similarity=0.159 Sum_probs=41.0
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHcCChhhHh
Q 027539 129 RTLLESSKIALDKGKLEDAVNYGTKALARMIAVCGPYHRTTASTYSLLAVVLYHTGDFNQVR 190 (222)
Q Consensus 129 ~~lle~g~~~l~qG~~e~A~~L~~eAL~i~eqV~G~~HpevA~~y~~LA~vy~~~Gd~~eAi 190 (222)
.-....|.++..+|++++|.+++.+++.+ .|+...++..+|.+|..+|++++|+
T Consensus 43 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~--------~~~~~~~~~~~a~~~~~~~~~~~A~ 96 (186)
T 3as5_A 43 DVALHLGIAYVKTGAVDRGTELLERSLAD--------APDNVKVATVLGLTYVQVQKYDLAV 96 (186)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHHTCHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhc--------CCCCHHHHHHHHHHHHHhcCHHHHH
Confidence 34555688888888888888888888776 4555667778888888888888887
No 128
>2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana}
Probab=97.03 E-value=0.00061 Score=59.67 Aligned_cols=53 Identities=9% Similarity=0.114 Sum_probs=48.1
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHcCChhhHh
Q 027539 130 TLLESSKIALDKGKLEDAVNYGTKALARMIAVCGPYHRTTASTYSLLAVVLYHTGDFNQVR 190 (222)
Q Consensus 130 ~lle~g~~~l~qG~~e~A~~L~~eAL~i~eqV~G~~HpevA~~y~~LA~vy~~~Gd~~eAi 190 (222)
-.++.|.++...|++++|++.|.+|+.+ +|+-+.+|.++|.+|..+|++++|+
T Consensus 232 ~~~nla~~~~~~g~~~~A~~~~~~al~~--------~p~~~~a~~~lg~a~~~~g~~~~A~ 284 (338)
T 2if4_A 232 CHLNIAACLIKLKRYDEAIGHCNIVLTE--------EEKNPKALFRRGKAKAELGQMDSAR 284 (338)
T ss_dssp HHHHHHHHHHTTTCCHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHTTTCHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHh--------CCCCHHHHHHHHHHHHHcCCHHHHH
Confidence 4566799999999999999999999985 5677889999999999999999999
No 129
>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A
Probab=97.00 E-value=0.00056 Score=61.13 Aligned_cols=56 Identities=14% Similarity=0.060 Sum_probs=49.8
Q ss_pred hHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHcCChhhHh
Q 027539 127 DGRTLLESSKIALDKGKLEDAVNYGTKALARMIAVCGPYHRTTASTYSLLAVVLYHTGDFNQVR 190 (222)
Q Consensus 127 ~a~~lle~g~~~l~qG~~e~A~~L~~eAL~i~eqV~G~~HpevA~~y~~LA~vy~~~Gd~~eAi 190 (222)
.+.-.++.|.++..+|++++|++.+.+|+.+ +|+-+.+|.++|.+|+.+|++++|+
T Consensus 272 ~~~~~~nla~~~~~~g~~~~A~~~~~~al~~--------~p~~~~a~~~lg~~~~~~g~~~eA~ 327 (370)
T 1ihg_A 272 ALSCVLNIGACKLKMSDWQGAVDSCLEALEI--------DPSNTKALYRRAQGWQGLKEYDQAL 327 (370)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT--------CTTCHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHHHHHhccCHHHHHHHHHHHHHh--------CchhHHHHHHHHHHHHHccCHHHHH
Confidence 3445667799999999999999999999974 6788899999999999999999999
No 130
>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A
Probab=97.00 E-value=0.0014 Score=46.05 Aligned_cols=52 Identities=21% Similarity=0.388 Sum_probs=43.9
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHcCChhhHh
Q 027539 131 LLESSKIALDKGKLEDAVNYGTKALARMIAVCGPYHRTTASTYSLLAVVLYHTGDFNQVR 190 (222)
Q Consensus 131 lle~g~~~l~qG~~e~A~~L~~eAL~i~eqV~G~~HpevA~~y~~LA~vy~~~Gd~~eAi 190 (222)
.+..|.++...|++++|..++.+++.+ .|+...++..+|.+|..+|++++|+
T Consensus 72 ~~~l~~~~~~~~~~~~A~~~~~~~~~~--------~~~~~~~~~~la~~~~~~~~~~~A~ 123 (136)
T 2fo7_A 72 WYNLGNAYYKQGDYDEAIEYYQKALEL--------DPRSAEAWYNLGNAYYKQGDYDEAI 123 (136)
T ss_dssp HHHHHHHHHTTTCHHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHTTTCHHHHH
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHHh--------CCCChHHHHHHHHHHHHHccHHHHH
Confidence 455699999999999999999999875 3444567889999999999999999
No 131
>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A
Probab=96.99 E-value=0.0013 Score=49.14 Aligned_cols=53 Identities=17% Similarity=0.055 Sum_probs=41.2
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHcCChhhHh
Q 027539 130 TLLESSKIALDKGKLEDAVNYGTKALARMIAVCGPYHRTTASTYSLLAVVLYHTGDFNQVR 190 (222)
Q Consensus 130 ~lle~g~~~l~qG~~e~A~~L~~eAL~i~eqV~G~~HpevA~~y~~LA~vy~~~Gd~~eAi 190 (222)
-.+..|..+...|++++|.+++.+++.+ +|+....+..+|.+|..+|++++|+
T Consensus 78 ~~~~~a~~~~~~~~~~~A~~~~~~~~~~--------~~~~~~~~~~~a~~~~~~~~~~~A~ 130 (186)
T 3as5_A 78 VATVLGLTYVQVQKYDLAVPLLIKVAEA--------NPINFNVRFRLGVALDNLGRFDEAI 130 (186)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHhc--------CcHhHHHHHHHHHHHHHcCcHHHHH
Confidence 3455688888888888888888888876 4445567788888888888888887
No 132
>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A
Probab=96.99 E-value=0.0012 Score=57.55 Aligned_cols=60 Identities=25% Similarity=0.189 Sum_probs=50.1
Q ss_pred cCchhHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHcCChhhHh
Q 027539 123 CTSADGRTLLESSKIALDKGKLEDAVNYGTKALARMIAVCGPYHRTTASTYSLLAVVLYHTGDFNQVR 190 (222)
Q Consensus 123 p~s~~a~~lle~g~~~l~qG~~e~A~~L~~eAL~i~eqV~G~~HpevA~~y~~LA~vy~~~Gd~~eAi 190 (222)
....++...+..|..+..+|++++|.++|.+++.. +|+.+.++..+|.+|..+|++++|+
T Consensus 21 ~~p~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~--------~p~~~~~~~~l~~~~~~~g~~~~A~ 80 (450)
T 2y4t_A 21 QSMADVEKHLELGKKLLAAGQLADALSQFHAAVDG--------DPDNYIAYYRRATVFLAMGKSKAAL 80 (450)
T ss_dssp --CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHTTCHHHHH
T ss_pred ccHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--------CCccHHHHHHHHHHHHHCCCHHHHH
Confidence 34567777888899999999999999999999875 5666888889999999999998888
No 133
>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A
Probab=96.98 E-value=0.00028 Score=64.55 Aligned_cols=65 Identities=12% Similarity=0.108 Sum_probs=53.5
Q ss_pred hhHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHh-------CCCChHHHHHHHHHHHHHHHcCChhhHh
Q 027539 126 ADGRTLLESSKIALDKGKLEDAVNYGTKALARMIAVC-------GPYHRTTASTYSLLAVVLYHTGDFNQVR 190 (222)
Q Consensus 126 ~~a~~lle~g~~~l~qG~~e~A~~L~~eAL~i~eqV~-------G~~HpevA~~y~~LA~vy~~~Gd~~eAi 190 (222)
..+....+.|..+..+|++++|+..|.+|+.+...-. ....+..+.+|+++|.+|..+|++++|+
T Consensus 266 ~~a~~~~~~G~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~ 337 (457)
T 1kt0_A 266 EQAAIVKEKGTVYFKGGKYMQAVIQYGKIVSWLEMEYGLSEKESKASESFLLAAFLNLAMCYLKLREYTKAV 337 (457)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTCCSCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhcccccCChHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHH
Confidence 4566778889999999999999999999999764321 0123455899999999999999999999
No 134
>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis}
Probab=96.98 E-value=0.0016 Score=50.54 Aligned_cols=56 Identities=7% Similarity=-0.062 Sum_probs=39.8
Q ss_pred hHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHcCChhhHh
Q 027539 127 DGRTLLESSKIALDKGKLEDAVNYGTKALARMIAVCGPYHRTTASTYSLLAVVLYHTGDFNQVR 190 (222)
Q Consensus 127 ~a~~lle~g~~~l~qG~~e~A~~L~~eAL~i~eqV~G~~HpevA~~y~~LA~vy~~~Gd~~eAi 190 (222)
++...+..|..+...|++++|.+++.+++.+ +|+...++..+|.+|..+|++++|+
T Consensus 7 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~--------~~~~~~~~~~l~~~~~~~~~~~~A~ 62 (225)
T 2vq2_A 7 VSNIKTQLAMEYMRGQDYRQATASIEDALKS--------DPKNELAWLVRAEIYQYLKVNDKAQ 62 (225)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHTTCHHHHH
T ss_pred cHHHHHHHHHHHHHHhhHHHHHHHHHHHHHh--------CccchHHHHHHHHHHHHcCChHHHH
Confidence 3444556677788888888888888777764 3444567777777777777777777
No 135
>3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus}
Probab=96.98 E-value=0.0011 Score=54.25 Aligned_cols=58 Identities=7% Similarity=-0.041 Sum_probs=52.9
Q ss_pred HHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHH--------cCChhhHh
Q 027539 128 GRTLLESSKIALDKGKLEDAVNYGTKALARMIAVCGPYHRTTASTYSLLAVVLYH--------TGDFNQVR 190 (222)
Q Consensus 128 a~~lle~g~~~l~qG~~e~A~~L~~eAL~i~eqV~G~~HpevA~~y~~LA~vy~~--------~Gd~~eAi 190 (222)
..-.+..|.++..+|++++|++.|.+++.++ |.+|....++..+|.+|+. +|++++|+
T Consensus 52 ~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~-----p~~~~~~~a~~~lg~~~~~~~~~~~~~~~~~~~A~ 117 (261)
T 3qky_A 52 ADAQFYLARAYYQNKEYLLAASEYERFIQIY-----QIDPRVPQAEYERAMCYYKLSPPYELDQTDTRKAI 117 (261)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-----TTCTTHHHHHHHHHHHHHHHCCCTTSCCHHHHHHH
T ss_pred HHHHHHHHHHHHHhCcHHHHHHHHHHHHHHC-----CCCchhHHHHHHHHHHHHHhcccccccchhHHHHH
Confidence 3456677999999999999999999999875 7789999999999999999 99999999
No 136
>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A
Probab=96.97 E-value=0.00091 Score=55.01 Aligned_cols=72 Identities=10% Similarity=0.058 Sum_probs=55.1
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHhCCCChH----HHHHHHHHHHHHHHcCChhhHhhchHHhhhhhCCCCc
Q 027539 130 TLLESSKIALDKGKLEDAVNYGTKALARMIAVCGPYHRT----TASTYSLLAVVLYHTGDFNQVRQSSVVFQCQLGDSKS 205 (222)
Q Consensus 130 ~lle~g~~~l~qG~~e~A~~L~~eAL~i~eqV~G~~Hpe----vA~~y~~LA~vy~~~Gd~~eAi~~~~~~~~~~~~~~~ 205 (222)
..+..|.++..+|++++|.+.+.+++.+..+.-++.+.. ...++..+|.+|..+|++++|. .+. ++
T Consensus 242 ~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~----~~~------~~ 311 (327)
T 3cv0_A 242 VMYNMAVSYSNMSQYDLAAKQLVRAIYMQVGGTTPTGEASREATRSMWDFFRMLLNVMNRPDLVE----LTY------AQ 311 (327)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTSCC-----CCTHHHHHHHHHHHHHHHTTCHHHHH----HHT------TC
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHHhCCccccccccchhhcCHHHHHHHHHHHHhcCCHHHHH----HHH------HH
Confidence 455669999999999999999999998765543333322 7889999999999999999999 776 56
Q ss_pred eEEEee
Q 027539 206 SIIITS 211 (222)
Q Consensus 206 a~~i~e 211 (222)
++.+..
T Consensus 312 ~l~~~~ 317 (327)
T 3cv0_A 312 NVEPFA 317 (327)
T ss_dssp CSHHHH
T ss_pred HHHhcc
Confidence 665443
No 137
>1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3
Probab=96.96 E-value=7e-05 Score=69.21 Aligned_cols=55 Identities=13% Similarity=0.167 Sum_probs=48.9
Q ss_pred HHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHcCChhhHh
Q 027539 128 GRTLLESSKIALDKGKLEDAVNYGTKALARMIAVCGPYHRTTASTYSLLAVVLYHTGDFNQVR 190 (222)
Q Consensus 128 a~~lle~g~~~l~qG~~e~A~~L~~eAL~i~eqV~G~~HpevA~~y~~LA~vy~~~Gd~~eAi 190 (222)
++.+.+.|..+..+|++++|+++|.+|+.+ +|+.+.++.++|.+|..+|++++|+
T Consensus 6 a~~~~~lg~~~~~~g~~~~A~~~~~~Al~~--------~p~~~~~~~~lg~~~~~~g~~~~A~ 60 (477)
T 1wao_1 6 AEELKTQANDYFKAKDYENAIKFYSQAIEL--------NPSNAIYYGNRSLAYLRTECYGYAL 60 (477)
T ss_dssp HTTSSSSSSSTTTTTCHHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHHh--------CCccHHHHHHHHHHHHHhcCHHHHH
Confidence 334455678888999999999999999987 7888999999999999999999999
No 138
>2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A
Probab=96.93 E-value=0.0027 Score=51.41 Aligned_cols=54 Identities=15% Similarity=0.116 Sum_probs=49.8
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHcCChhhHh
Q 027539 132 LESSKIALDKGKLEDAVNYGTKALARMIAVCGPYHRTTASTYSLLAVVLYHTGDFNQVR 190 (222)
Q Consensus 132 le~g~~~l~qG~~e~A~~L~~eAL~i~eqV~G~~HpevA~~y~~LA~vy~~~Gd~~eAi 190 (222)
+..|..+..+|++++|+..|++++..+ |..|....++..+|.+|..+|++++|+
T Consensus 151 ~~~a~~~~~~~~~~~A~~~~~~~l~~~-----p~~~~~~~a~~~l~~~~~~~g~~~~A~ 204 (225)
T 2yhc_A 151 YSVAEYYTERGAWVAVVNRVEGMLRDY-----PDTQATRDALPLMENAYRQMQMNAQAE 204 (225)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHHHS-----TTSHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHcCcHHHHHHHHHHHHHHC-----cCCCccHHHHHHHHHHHHHcCCcHHHH
Confidence 567999999999999999999999876 668888999999999999999999999
No 139
>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1
Probab=96.92 E-value=0.00015 Score=57.43 Aligned_cols=58 Identities=16% Similarity=0.169 Sum_probs=44.7
Q ss_pred HHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHcCChhhHhhchHHhh
Q 027539 128 GRTLLESSKIALDKGKLEDAVNYGTKALARMIAVCGPYHRTTASTYSLLAVVLYHTGDFNQVRQSSVVFQ 197 (222)
Q Consensus 128 a~~lle~g~~~l~qG~~e~A~~L~~eAL~i~eqV~G~~HpevA~~y~~LA~vy~~~Gd~~eAi~~~~~~~ 197 (222)
+...+..|.++...|++++|.+.+.+++.+ .|+.+.++..+|.+|..+|++++|+ .+.
T Consensus 57 ~~~~~~la~~~~~~~~~~~A~~~~~~~~~~--------~~~~~~~~~~la~~~~~~~~~~~A~----~~~ 114 (243)
T 2q7f_A 57 AIPYINFANLLSSVNELERALAFYDKALEL--------DSSAATAYYGAGNVYVVKEMYKEAK----DMF 114 (243)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHTTCHHHHH----HHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHc--------CCcchHHHHHHHHHHHHhccHHHHH----HHH
Confidence 344555688888888888888888888876 4555677888888888888888888 555
No 140
>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli}
Probab=96.90 E-value=0.0017 Score=49.83 Aligned_cols=53 Identities=15% Similarity=0.127 Sum_probs=43.3
Q ss_pred HHHHHHHH-HHhcCCh--HHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHcCChhhHh
Q 027539 130 TLLESSKI-ALDKGKL--EDAVNYGTKALARMIAVCGPYHRTTASTYSLLAVVLYHTGDFNQVR 190 (222)
Q Consensus 130 ~lle~g~~-~l~qG~~--e~A~~L~~eAL~i~eqV~G~~HpevA~~y~~LA~vy~~~Gd~~eAi 190 (222)
-.+..|.+ +..+|++ ++|...+.+++.+ +|+-..++.++|.+|..+|++++|+
T Consensus 80 ~~~~la~~l~~~~~~~~~~~A~~~~~~al~~--------~p~~~~~~~~la~~~~~~g~~~~A~ 135 (177)
T 2e2e_A 80 LYAALATVLYYQASQHMTAQTRAMIDKALAL--------DSNEITALMLLASDAFMQANYAQAI 135 (177)
T ss_dssp HHHHHHHHHHHHTTTCCCHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHHHhcCCcchHHHHHHHHHHHHh--------CCCcHHHHHHHHHHHHHcccHHHHH
Confidence 34556888 7788888 9999999998876 4555677889999999999999999
No 141
>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis}
Probab=96.90 E-value=0.0018 Score=50.17 Aligned_cols=55 Identities=16% Similarity=0.111 Sum_probs=47.1
Q ss_pred HHHHHHHHHHhc-CChHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHcCChhhHh
Q 027539 130 TLLESSKIALDK-GKLEDAVNYGTKALARMIAVCGPYHRTTASTYSLLAVVLYHTGDFNQVR 190 (222)
Q Consensus 130 ~lle~g~~~l~q-G~~e~A~~L~~eAL~i~eqV~G~~HpevA~~y~~LA~vy~~~Gd~~eAi 190 (222)
.....|..+... |++++|.+++.+++. .+.+|+....+..+|.+|..+|++++|+
T Consensus 78 ~~~~l~~~~~~~~~~~~~A~~~~~~~~~------~~~~~~~~~~~~~l~~~~~~~~~~~~A~ 133 (225)
T 2vq2_A 78 INNNYGWFLCGRLNRPAESMAYFDKALA------DPTYPTPYIANLNKGICSAKQGQFGLAE 133 (225)
T ss_dssp HHHHHHHHHHTTTCCHHHHHHHHHHHHT------STTCSCHHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHHHhcCcHHHHHHHHHHHHc------CcCCcchHHHHHHHHHHHHHcCCHHHHH
Confidence 345568999999 999999999999887 4677888889999999999999999998
No 142
>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii}
Probab=96.87 E-value=0.00074 Score=54.63 Aligned_cols=65 Identities=11% Similarity=-0.044 Sum_probs=54.7
Q ss_pred HHHHHHHHHHHhcCC---hHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHcCChhhHhhchHHhh
Q 027539 129 RTLLESSKIALDKGK---LEDAVNYGTKALARMIAVCGPYHRTTASTYSLLAVVLYHTGDFNQVRQSSVVFQ 197 (222)
Q Consensus 129 ~~lle~g~~~l~qG~---~e~A~~L~~eAL~i~eqV~G~~HpevA~~y~~LA~vy~~~Gd~~eAi~~~~~~~ 197 (222)
...+..|.++...|+ +++|.+.|.+++.+.++.-++..+..+.+|..||.+|..+|++++|+ .+.
T Consensus 177 ~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~----~~~ 244 (272)
T 3u4t_A 177 IGYLWRARANAAQDPDTKQGLAKPYYEKLIEVCAPGGAKYKDELIEANEYIAYYYTINRDKVKAD----AAW 244 (272)
T ss_dssp HHHHHHHHHHHHHSTTCSSCTTHHHHHHHHHHHGGGGGGGHHHHHHHHHHHHHHHHHTTCHHHHH----HHH
T ss_pred HHHHHHHHHHHHcCcchhhHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHHHHcCCHHHHH----HHH
Confidence 445556889888898 89999999999999877655445667899999999999999999999 666
No 143
>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A
Probab=96.86 E-value=0.001 Score=60.66 Aligned_cols=55 Identities=15% Similarity=0.090 Sum_probs=49.6
Q ss_pred HHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHcCChhhHh
Q 027539 128 GRTLLESSKIALDKGKLEDAVNYGTKALARMIAVCGPYHRTTASTYSLLAVVLYHTGDFNQVR 190 (222)
Q Consensus 128 a~~lle~g~~~l~qG~~e~A~~L~~eAL~i~eqV~G~~HpevA~~y~~LA~vy~~~Gd~~eAi 190 (222)
+.-.++.|.+++..|++++|+..|.+|+.+ +|+-+.+|.++|.+|..+|++++|+
T Consensus 317 ~~~~~nla~~~~~~g~~~~A~~~~~~al~~--------~p~~~~a~~~~g~a~~~~g~~~~A~ 371 (457)
T 1kt0_A 317 LAAFLNLAMCYLKLREYTKAVECCDKALGL--------DSANEKGLYRRGEAQLLMNEFESAK 371 (457)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------STTCHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHhc--------CCccHHHHHHHHHHHHHccCHHHHH
Confidence 455667899999999999999999999986 4667889999999999999999999
No 144
>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus}
Probab=96.86 E-value=0.0013 Score=54.62 Aligned_cols=52 Identities=8% Similarity=-0.026 Sum_probs=44.6
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHcCChhhHh
Q 027539 131 LLESSKIALDKGKLEDAVNYGTKALARMIAVCGPYHRTTASTYSLLAVVLYHTGDFNQVR 190 (222)
Q Consensus 131 lle~g~~~l~qG~~e~A~~L~~eAL~i~eqV~G~~HpevA~~y~~LA~vy~~~Gd~~eAi 190 (222)
....|.++...|++++|.+.|.+++.+ +|+....+..+|.+|..+|++++|+
T Consensus 275 ~~~la~~~~~~~~~~~A~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~g~~~~A~ 326 (359)
T 3ieg_A 275 KERICHCFSKDEKPVEAIRICSEVLQM--------EPDNVNALKDRAEAYLIEEMYDEAI 326 (359)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHHccCHHHHHHHHHHHHHh--------CcccHHHHHHHHHHHHHcCCHHHHH
Confidence 455688999999999999999999886 5666778999999999999999999
No 145
>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus}
Probab=96.86 E-value=0.00067 Score=62.07 Aligned_cols=57 Identities=16% Similarity=0.193 Sum_probs=50.8
Q ss_pred hhHHHHHHHHHHHHhcCCh-HHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHcCChhhHh
Q 027539 126 ADGRTLLESSKIALDKGKL-EDAVNYGTKALARMIAVCGPYHRTTASTYSLLAVVLYHTGDFNQVR 190 (222)
Q Consensus 126 ~~a~~lle~g~~~l~qG~~-e~A~~L~~eAL~i~eqV~G~~HpevA~~y~~LA~vy~~~Gd~~eAi 190 (222)
..+.-.+..|..+..+|++ ++|+++|.+|+.+ .|+-+.++.+||.+|+.+|++++|+
T Consensus 100 ~~a~~~~~lg~~~~~~g~~~~~A~~~~~~al~~--------~p~~~~a~~~lg~~~~~~g~~~~A~ 157 (474)
T 4abn_A 100 VEAQALMLKGKALNVTPDYSPEAEVLLSKAVKL--------EPELVEAWNQLGEVYWKKGDVTSAH 157 (474)
T ss_dssp CCHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHHTCHHHHH
T ss_pred hhHHHHHHHHHHHHhccccHHHHHHHHHHHHhh--------CCCCHHHHHHHHHHHHHcCCHHHHH
Confidence 3456677789999999999 9999999999986 4666789999999999999999999
No 146
>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1
Probab=96.84 E-value=0.0012 Score=56.80 Aligned_cols=49 Identities=20% Similarity=0.218 Sum_probs=28.1
Q ss_pred HHHHHHhcCChHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHcCChhhHh
Q 027539 134 SSKIALDKGKLEDAVNYGTKALARMIAVCGPYHRTTASTYSLLAVVLYHTGDFNQVR 190 (222)
Q Consensus 134 ~g~~~l~qG~~e~A~~L~~eAL~i~eqV~G~~HpevA~~y~~LA~vy~~~Gd~~eAi 190 (222)
.|.++..+|++++|.++|.+++.+ +|+-+.++++||.+|..+|++++|+
T Consensus 277 l~~~~~~~g~~~~A~~~~~~al~~--------~p~~~~~~~~l~~~~~~~g~~~~A~ 325 (388)
T 1w3b_A 277 LANALKEKGSVAEAEDCYNTALRL--------CPTHADSLNNLANIKREQGNIEEAV 325 (388)
T ss_dssp HHHHHHHHSCHHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHTTTCHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHhh--------CcccHHHHHHHHHHHHHcCCHHHHH
Confidence 355666666666666666666544 2333445556666666666666655
No 147
>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A
Probab=96.84 E-value=0.00086 Score=59.62 Aligned_cols=57 Identities=19% Similarity=0.245 Sum_probs=50.5
Q ss_pred hhHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHcCChhhHh
Q 027539 126 ADGRTLLESSKIALDKGKLEDAVNYGTKALARMIAVCGPYHRTTASTYSLLAVVLYHTGDFNQVR 190 (222)
Q Consensus 126 ~~a~~lle~g~~~l~qG~~e~A~~L~~eAL~i~eqV~G~~HpevA~~y~~LA~vy~~~Gd~~eAi 190 (222)
..+..+++.|..+..+|++++|+++|++++.+ +|+.+.++.++|.+|..+|++++|+
T Consensus 23 ~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~--------~p~~~~~~~~la~~~~~~g~~~~A~ 79 (537)
T 3fp2_A 23 AYAVQLKNRGNHFFTAKNFNEAIKYYQYAIEL--------DPNEPVFYSNISACYISTGDLEKVI 79 (537)
T ss_dssp HHHHHHHHHHHHHHHTTCCC-CHHHHHHHHHH--------CTTCHHHHHHHHHHHHHHTCHHHHH
T ss_pred HHHHHHHHHHHHHHHhccHHHHHHHHHHHHhh--------CCCCcHHHHHHHHHHHHcCCHHHHH
Confidence 46788899999999999999999999999986 4666789999999999999999999
No 148
>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A*
Probab=96.80 E-value=0.0019 Score=59.63 Aligned_cols=54 Identities=9% Similarity=0.057 Sum_probs=44.8
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHcCChhhHh
Q 027539 129 RTLLESSKIALDKGKLEDAVNYGTKALARMIAVCGPYHRTTASTYSLLAVVLYHTGDFNQVR 190 (222)
Q Consensus 129 ~~lle~g~~~l~qG~~e~A~~L~~eAL~i~eqV~G~~HpevA~~y~~LA~vy~~~Gd~~eAi 190 (222)
...+..|.++..+|++++|.+.|.+|+.+ +|+-+.++.+||.+|..+|++++|+
T Consensus 58 ~~~~~lg~~~~~~g~~~~A~~~~~~al~~--------~p~~~~~~~~la~~~~~~g~~~~A~ 111 (568)
T 2vsy_A 58 EAVARLGRVRWTQQRHAEAAVLLQQASDA--------APEHPGIALWLGHALEDAGQAEAAA 111 (568)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHhc--------CCCCHHHHHHHHHHHHHcCCHHHHH
Confidence 34555689999999999999999999886 4566778889999999999999988
No 149
>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1
Probab=96.80 E-value=0.0014 Score=56.37 Aligned_cols=55 Identities=20% Similarity=0.266 Sum_probs=46.2
Q ss_pred HHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHcCChhhHh
Q 027539 128 GRTLLESSKIALDKGKLEDAVNYGTKALARMIAVCGPYHRTTASTYSLLAVVLYHTGDFNQVR 190 (222)
Q Consensus 128 a~~lle~g~~~l~qG~~e~A~~L~~eAL~i~eqV~G~~HpevA~~y~~LA~vy~~~Gd~~eAi 190 (222)
+......|.++..+|++++|.++|.+++.+ +|+...+|.+||.+|..+|++++|+
T Consensus 67 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~~--------~p~~~~~~~~l~~~~~~~g~~~~A~ 121 (388)
T 1w3b_A 67 AEAYSNLGNVYKERGQLQEAIEHYRHALRL--------KPDFIDGYINLAAALVAAGDMEGAV 121 (388)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHHSCSSHHH
T ss_pred hHHHHHHHHHHHHCCCHHHHHHHHHHHHHc--------CcchHHHHHHHHHHHHHcCCHHHHH
Confidence 344555699999999999999999999875 5777778899999999999998888
No 150
>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1
Probab=96.80 E-value=0.0025 Score=50.30 Aligned_cols=60 Identities=13% Similarity=0.098 Sum_probs=47.1
Q ss_pred hhHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHcCChhhHhhchHHhh
Q 027539 126 ADGRTLLESSKIALDKGKLEDAVNYGTKALARMIAVCGPYHRTTASTYSLLAVVLYHTGDFNQVRQSSVVFQ 197 (222)
Q Consensus 126 ~~a~~lle~g~~~l~qG~~e~A~~L~~eAL~i~eqV~G~~HpevA~~y~~LA~vy~~~Gd~~eAi~~~~~~~ 197 (222)
..+.-....|.++..+|++++|.+++.+++.+. |.+ ...+..+|.+|..+|++++|+ .+.
T Consensus 89 ~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-----~~~---~~~~~~~a~~~~~~~~~~~A~----~~~ 148 (243)
T 2q7f_A 89 SAATAYYGAGNVYVVKEMYKEAKDMFEKALRAG-----MEN---GDLFYMLGTVLVKLEQPKLAL----PYL 148 (243)
T ss_dssp TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT-----CCS---HHHHHHHHHHHHHTSCHHHHH----HHH
T ss_pred cchHHHHHHHHHHHHhccHHHHHHHHHHHHHhC-----CCC---HHHHHHHHHHHHHhccHHHHH----HHH
Confidence 345556667888999999999999999988752 334 456888999999999999999 666
No 151
>4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=96.77 E-value=0.0016 Score=56.66 Aligned_cols=62 Identities=8% Similarity=0.075 Sum_probs=54.4
Q ss_pred hHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHcCChhhHh
Q 027539 127 DGRTLLESSKIALDKGKLEDAVNYGTKALARMIAVCGPYHRTTASTYSLLAVVLYHTGDFNQVR 190 (222)
Q Consensus 127 ~a~~lle~g~~~l~qG~~e~A~~L~~eAL~i~eqV~G~~HpevA~~y~~LA~vy~~~Gd~~eAi 190 (222)
.++-....|+++..+|++++|.+++.+++...... ..+|+.+.+|.+++++|..+|++++|.
T Consensus 134 ~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~A~ 195 (434)
T 4b4t_Q 134 KHSLSIKLATLHYQKKQYKDSLALINDLLREFKKL--DDKPSLVDVHLLESKVYHKLRNLAKSK 195 (434)
T ss_dssp HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTS--SCSTHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHHHHHHccChHHHHHHHHHHHHHHHhc--ccchhHHHHHHHHHHHHHHhCcHHHHH
Confidence 35556667999999999999999999998776553 458999999999999999999999999
No 152
>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae}
Probab=96.71 E-value=0.0018 Score=56.95 Aligned_cols=55 Identities=24% Similarity=0.275 Sum_probs=46.4
Q ss_pred hHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHcCChhhHh
Q 027539 127 DGRTLLESSKIALDKGKLEDAVNYGTKALARMIAVCGPYHRTTASTYSLLAVVLYHTGDFNQVR 190 (222)
Q Consensus 127 ~a~~lle~g~~~l~qG~~e~A~~L~~eAL~i~eqV~G~~HpevA~~y~~LA~vy~~~Gd~~eAi 190 (222)
.++.+++.|..+..+|++++|+.+|++++.+. |+ +.++..+|.+|..+|++++|+
T Consensus 5 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~--------p~-~~~~~~la~~~~~~g~~~~A~ 59 (514)
T 2gw1_A 5 YALALKDKGNQFFRNKKYDDAIKYYNWALELK--------ED-PVFYSNLSACYVSVGDLKKVV 59 (514)
T ss_dssp HHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHC--------CC-HHHHHHHHHHHHHHTCHHHHH
T ss_pred hHHHHHHHHHHHHHhccHHHHHHHHHHHHhcC--------cc-HHHHHhHHHHHHHHhhHHHHH
Confidence 56778889999999999999999999998864 33 567888888888888888888
No 153
>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A
Probab=96.68 E-value=0.0022 Score=55.77 Aligned_cols=54 Identities=9% Similarity=0.011 Sum_probs=41.6
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHcCChhhHh
Q 027539 129 RTLLESSKIALDKGKLEDAVNYGTKALARMIAVCGPYHRTTASTYSLLAVVLYHTGDFNQVR 190 (222)
Q Consensus 129 ~~lle~g~~~l~qG~~e~A~~L~~eAL~i~eqV~G~~HpevA~~y~~LA~vy~~~Gd~~eAi 190 (222)
......|.++...|++++|++++.+++.+ +|+.+.++..+|.+|..+|++++|+
T Consensus 296 ~~~~~l~~~~~~~g~~~~A~~~~~~a~~~--------~p~~~~~~~~l~~~~~~~~~~~~A~ 349 (450)
T 2y4t_A 296 RSKERICHCFSKDEKPVEAIRVCSEVLQM--------EPDNVNALKDRAEAYLIEEMYDEAI 349 (450)
T ss_dssp HHHHHHHHHHHTTTCHHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHh--------CcccHHHHHHHHHHHHHhcCHHHHH
Confidence 34555678888888888888888888765 5666677888888888888888888
No 154
>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe}
Probab=96.62 E-value=0.0042 Score=56.19 Aligned_cols=60 Identities=18% Similarity=0.166 Sum_probs=51.2
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHhCCCChHH-HHHHHHHHHHHHHcCChhhHh
Q 027539 129 RTLLESSKIALDKGKLEDAVNYGTKALARMIAVCGPYHRTT-ASTYSLLAVVLYHTGDFNQVR 190 (222)
Q Consensus 129 ~~lle~g~~~l~qG~~e~A~~L~~eAL~i~eqV~G~~Hpev-A~~y~~LA~vy~~~Gd~~eAi 190 (222)
......|..+...|++++|.++|.+++.+..+. +.+|+. +.+|..|+.+|..+|++++|+
T Consensus 476 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~--~~~p~~~~~~~~~l~~~~~~~g~~~~A~ 536 (597)
T 2xpi_A 476 LLLNELGVVAFNKSDMQTAINHFQNALLLVKKT--QSNEKPWAATWANLGHAYRKLKMYDAAI 536 (597)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHS--CCCSGGGHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHhhhcc--ccchhhHHHHHHHHHHHHHHhcCHHHHH
Confidence 335556999999999999999999999987654 456664 899999999999999999998
No 155
>3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633}
Probab=96.62 E-value=0.0033 Score=45.73 Aligned_cols=59 Identities=15% Similarity=0.096 Sum_probs=46.7
Q ss_pred ccCchhHHHHHHHHHHHHhcCC---hHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHcCChhhHh
Q 027539 122 GCTSADGRTLLESSKIALDKGK---LEDAVNYGTKALARMIAVCGPYHRTTASTYSLLAVVLYHTGDFNQVR 190 (222)
Q Consensus 122 ~p~s~~a~~lle~g~~~l~qG~---~e~A~~L~~eAL~i~eqV~G~~HpevA~~y~~LA~vy~~~Gd~~eAi 190 (222)
.|..++. +...|++.+..+. .++|..++.+||. ..|+-.+++..||.+++..|+|++|+
T Consensus 2 ~p~~~~~--~~~~a~al~~~~~~~~~~~A~~~l~~AL~--------~dp~~~rA~~~lg~~~~~~g~y~~Ai 63 (93)
T 3bee_A 2 NAVTATQ--LAAKATTLYYLHKQAMTDEVSLLLEQALQ--------LEPYNEAALSLIANDHFISFRFQEAI 63 (93)
T ss_dssp CCCCHHH--HHHHHHHHHHTTTTCCCHHHHHHHHHHHH--------HCTTCHHHHHHHHHHHHHTTCHHHHH
T ss_pred CCCCHHH--HHHHHHHHHHhcCCCCCHHHHHHHHHHHH--------HCcCCHHHHHHHHHHHHHcCCHHHHH
Confidence 3455544 4445777654443 7999999999998 57777889999999999999999999
No 156
>1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2
Probab=96.59 E-value=0.0056 Score=52.37 Aligned_cols=61 Identities=8% Similarity=-0.029 Sum_probs=52.7
Q ss_pred HHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHcCChhhHh
Q 027539 128 GRTLLESSKIALDKGKLEDAVNYGTKALARMIAVCGPYHRTTASTYSLLAVVLYHTGDFNQVR 190 (222)
Q Consensus 128 a~~lle~g~~~l~qG~~e~A~~L~~eAL~i~eqV~G~~HpevA~~y~~LA~vy~~~Gd~~eAi 190 (222)
+.-+...|..+..+|++++|.+++.+|+.+..+. | .....+.++.++|.+|..+|++++|+
T Consensus 53 ~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~-~-~~~~~~~~~~~la~~~~~~G~~~~A~ 113 (373)
T 1hz4_A 53 IVATSVLGEVLHCKGELTRSLALMQQTEQMARQH-D-VWHYALWSLIQQSEILFAQGFLQTAW 113 (373)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHT-T-CHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHhc-C-cHHHHHHHHHHHHHHHHHCCCHHHHH
Confidence 3456667999999999999999999999998883 3 34467889999999999999999998
No 157
>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus}
Probab=96.58 E-value=0.002 Score=58.92 Aligned_cols=56 Identities=7% Similarity=-0.099 Sum_probs=48.2
Q ss_pred HHHHHHHHHHhc--------CChHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHcCChhhHh
Q 027539 130 TLLESSKIALDK--------GKLEDAVNYGTKALARMIAVCGPYHRTTASTYSLLAVVLYHTGDFNQVR 190 (222)
Q Consensus 130 ~lle~g~~~l~q--------G~~e~A~~L~~eAL~i~eqV~G~~HpevA~~y~~LA~vy~~~Gd~~eAi 190 (222)
-....|.++..+ |++++|++.|.+|+.+ .|.+++.+..|.+||.+|..+|++++|+
T Consensus 215 ~~~~lg~~~~~~~~~~~~~~g~~~~A~~~~~~al~~-----~p~~~~~~~~~~~lg~~~~~~g~~~~A~ 278 (474)
T 4abn_A 215 SWYILGNAYLSLYFNTGQNPKISQQALSAYAQAEKV-----DRKASSNPDLHLNRATLHKYEESYGEAL 278 (474)
T ss_dssp HHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHH-----CGGGGGCHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHHHHHHhhccccchHHHHHHHHHHHHHh-----CCCcccCHHHHHHHHHHHHHcCCHHHHH
Confidence 345569999888 9999999999999987 2324488999999999999999999999
No 158
>2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus}
Probab=96.58 E-value=0.002 Score=49.99 Aligned_cols=62 Identities=13% Similarity=-0.026 Sum_probs=49.4
Q ss_pred ccCchhHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHhCCCChHH--HHHHHHHHHHHHHcCChhhHhhchHHhh
Q 027539 122 GCTSADGRTLLESSKIALDKGKLEDAVNYGTKALARMIAVCGPYHRTT--ASTYSLLAVVLYHTGDFNQVRQSSVVFQ 197 (222)
Q Consensus 122 ~p~s~~a~~lle~g~~~l~qG~~e~A~~L~~eAL~i~eqV~G~~Hpev--A~~y~~LA~vy~~~Gd~~eAi~~~~~~~ 197 (222)
.|..+.+ .+..|.++..+|++++|.+.|.+++.+ +|+- ...+.+|+.++..+|+.++|+ ..+
T Consensus 104 ~P~~~~~--~~~la~~~~~~g~~~~A~~~~~~~l~~--------~p~~~~~~a~~~l~~~~~~~g~~~~A~----~~y 167 (176)
T 2r5s_A 104 NPDNFEL--ACELAVQYNQVGRDEEALELLWNILKV--------NLGAQDGEVKKTFMDILSALGQGNAIA----SKY 167 (176)
T ss_dssp STTCHHH--HHHHHHHHHHTTCHHHHHHHHHHHHTT--------CTTTTTTHHHHHHHHHHHHHCSSCHHH----HHH
T ss_pred CCCCHHH--HHHHHHHHHHcccHHHHHHHHHHHHHh--------CcccChHHHHHHHHHHHHHhCCCCcHH----HHH
Confidence 3444444 455699999999999999999998854 4443 457889999999999999999 555
No 159
>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A*
Probab=96.58 E-value=0.0018 Score=59.70 Aligned_cols=55 Identities=15% Similarity=0.059 Sum_probs=48.9
Q ss_pred HHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHcCChhhHh
Q 027539 128 GRTLLESSKIALDKGKLEDAVNYGTKALARMIAVCGPYHRTTASTYSLLAVVLYHTGDFNQVR 190 (222)
Q Consensus 128 a~~lle~g~~~l~qG~~e~A~~L~~eAL~i~eqV~G~~HpevA~~y~~LA~vy~~~Gd~~eAi 190 (222)
+......|.++..+|++++|.++|.+|+.+ +|+-+.++.+||.+|..+|++++|+
T Consensus 23 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~~--------~p~~~~~~~~lg~~~~~~g~~~~A~ 77 (568)
T 2vsy_A 23 FVAWLMLADAELGMGDTTAGEMAVQRGLAL--------HPGHPEAVARLGRVRWTQQRHAEAA 77 (568)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHTT--------STTCHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--------CCCCHHHHHHHHHHHHHCCCHHHHH
Confidence 344666799999999999999999999974 6777889999999999999999999
No 160
>2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana}
Probab=96.57 E-value=0.0018 Score=56.71 Aligned_cols=65 Identities=15% Similarity=0.079 Sum_probs=50.1
Q ss_pred hhHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHh-----CC----CChHHHHHHHHHHHHHHHcCChhhHh
Q 027539 126 ADGRTLLESSKIALDKGKLEDAVNYGTKALARMIAVC-----GP----YHRTTASTYSLLAVVLYHTGDFNQVR 190 (222)
Q Consensus 126 ~~a~~lle~g~~~l~qG~~e~A~~L~~eAL~i~eqV~-----G~----~HpevA~~y~~LA~vy~~~Gd~~eAi 190 (222)
..+....+.|..+..+|++++|+..|.+|+.+...-. |. .......+|++||.+|..+|++++|+
T Consensus 177 ~~a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~l~~~~~~nla~~~~~~g~~~~A~ 250 (338)
T 2if4_A 177 GAADRRKMDGNSLFKEEKLEEAMQQYEMAIAYMGDDFMFQLYGKYQDMALAVKNPCHLNIAACLIKLKRYDEAI 250 (338)
T ss_dssp HHHHHHHHHHHHTCSSSCCHHHHHHHHHHHHHSCHHHHHTCCHHHHHHHHHHHTHHHHHHHHHHHTTTCCHHHH
T ss_pred HHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhccchhhhhcccHHHHHHHHHHHHHHHHHHHHHHcCCHHHHH
Confidence 3677788899999999999999999999998753211 00 00001149999999999999999999
No 161
>2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ...
Probab=96.56 E-value=0.002 Score=58.11 Aligned_cols=60 Identities=8% Similarity=0.029 Sum_probs=48.7
Q ss_pred cCchhHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHcCC-hhhHh
Q 027539 123 CTSADGRTLLESSKIALDKGKLEDAVNYGTKALARMIAVCGPYHRTTASTYSLLAVVLYHTGD-FNQVR 190 (222)
Q Consensus 123 p~s~~a~~lle~g~~~l~qG~~e~A~~L~~eAL~i~eqV~G~~HpevA~~y~~LA~vy~~~Gd-~~eAi 190 (222)
.....+.-....|.++..+|++++|+++|.+++.+ +|+-+.+|+++|.+|..+|+ +++|+
T Consensus 92 ~~p~~~~a~~~lg~~~~~~g~~~~Al~~~~~al~l--------~P~~~~a~~~~g~~l~~~g~d~~eAl 152 (382)
T 2h6f_A 92 YSDKFRDVYDYFRAVLQRDERSERAFKLTRDAIEL--------NAANYTVWHFRRVLLKSLQKDLHEEM 152 (382)
T ss_dssp CCHHHHHHHHHHHHHHHHTCCCHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHTTCCHHHHH
T ss_pred CChhhHHHHHHHHHHHHHCCChHHHHHHHHHHHHh--------CccCHHHHHHHHHHHHHcccCHHHHH
Confidence 33444555556689999999999999999999964 67778889999999999996 88888
No 162
>2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ...
Probab=96.56 E-value=0.002 Score=58.14 Aligned_cols=59 Identities=14% Similarity=0.050 Sum_probs=47.9
Q ss_pred ccCchhHHHHHHHHHHHHhcCC-hHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHcCChhhHh
Q 027539 122 GCTSADGRTLLESSKIALDKGK-LEDAVNYGTKALARMIAVCGPYHRTTASTYSLLAVVLYHTGDFNQVR 190 (222)
Q Consensus 122 ~p~s~~a~~lle~g~~~l~qG~-~e~A~~L~~eAL~i~eqV~G~~HpevA~~y~~LA~vy~~~Gd~~eAi 190 (222)
+|....+ ....|.++...|+ +++|+..|.+|+.+ +|+-+.+|+++|.+|..+|++++|+
T Consensus 127 ~P~~~~a--~~~~g~~l~~~g~d~~eAl~~~~~al~l--------~P~~~~a~~~~g~~~~~~g~~~eAl 186 (382)
T 2h6f_A 127 NAANYTV--WHFRRVLLKSLQKDLHEEMNYITAIIEE--------QPKNYQVWHHRRVLVEWLRDPSQEL 186 (382)
T ss_dssp CTTCHHH--HHHHHHHHHHTTCCHHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHHTCCTTHH
T ss_pred CccCHHH--HHHHHHHHHHcccCHHHHHHHHHHHHHH--------CCCCHHHHHHHHHHHHHccCHHHHH
Confidence 4444444 4455999999997 99999999999975 6777788899999999999998888
No 163
>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli}
Probab=96.52 E-value=0.0045 Score=47.43 Aligned_cols=59 Identities=19% Similarity=0.177 Sum_probs=47.9
Q ss_pred ccCchhHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHH-HHHcCCh--hhHh
Q 027539 122 GCTSADGRTLLESSKIALDKGKLEDAVNYGTKALARMIAVCGPYHRTTASTYSLLAVV-LYHTGDF--NQVR 190 (222)
Q Consensus 122 ~p~s~~a~~lle~g~~~l~qG~~e~A~~L~~eAL~i~eqV~G~~HpevA~~y~~LA~v-y~~~Gd~--~eAi 190 (222)
.|..+. ..+..|.++...|++++|...|.+++.+. |+....+..+|.+ |...|++ ++|+
T Consensus 40 ~p~~~~--~~~~lg~~~~~~~~~~~A~~~~~~al~~~--------p~~~~~~~~la~~l~~~~~~~~~~~A~ 101 (177)
T 2e2e_A 40 NPQNSE--QWALLGEYYLWQNDYSNSLLAYRQALQLR--------GENAELYAALATVLYYQASQHMTAQTR 101 (177)
T ss_dssp CCSCHH--HHHHHHHHHHHTTCHHHHHHHHHHHHHHH--------CSCHHHHHHHHHHHHHHTTTCCCHHHH
T ss_pred CCCcHH--HHHHHHHHHHHcCCHHHHHHHHHHHHHcC--------CCCHHHHHHHHHHHHHhcCCcchHHHH
Confidence 344444 45566999999999999999999999874 3345678999999 8899998 9988
No 164
>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}
Probab=96.52 E-value=0.0021 Score=61.69 Aligned_cols=54 Identities=20% Similarity=0.111 Sum_probs=47.8
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHcCChhhHh
Q 027539 129 RTLLESSKIALDKGKLEDAVNYGTKALARMIAVCGPYHRTTASTYSLLAVVLYHTGDFNQVR 190 (222)
Q Consensus 129 ~~lle~g~~~l~qG~~e~A~~L~~eAL~i~eqV~G~~HpevA~~y~~LA~vy~~~Gd~~eAi 190 (222)
...+..|.++..+|++++|++.|.+++.+ +|+-+.++.++|.+|..+|++++|+
T Consensus 434 ~~~~~~a~~~~~~g~~~~A~~~~~~al~~--------~p~~~~a~~~lg~~~~~~g~~~~A~ 487 (681)
T 2pzi_A 434 ELPLMEVRALLDLGDVAKATRKLDDLAER--------VGWRWRLVWYRAVAELLTGDYDSAT 487 (681)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHH--------HCCCHHHHHHHHHHHHHHTCHHHHH
T ss_pred hHHHHHHHHHHhcCCHHHHHHHHHHHhcc--------CcchHHHHHHHHHHHHHcCCHHHHH
Confidence 34556699999999999999999999986 5667889999999999999999998
No 165
>1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1
Probab=96.48 E-value=0.0042 Score=50.91 Aligned_cols=54 Identities=19% Similarity=0.207 Sum_probs=40.0
Q ss_pred hHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHH----cCChhhHh
Q 027539 127 DGRTLLESSKIALDKGKLEDAVNYGTKALARMIAVCGPYHRTTASTYSLLAVVLYH----TGDFNQVR 190 (222)
Q Consensus 127 ~a~~lle~g~~~l~qG~~e~A~~L~~eAL~i~eqV~G~~HpevA~~y~~LA~vy~~----~Gd~~eAi 190 (222)
++...+..|..+..+|++++|.++|.+|+. +.+ +.++.+||.+|.. .|++++|+
T Consensus 5 ~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~-------~~~---~~a~~~lg~~~~~g~~~~~~~~~A~ 62 (273)
T 1ouv_A 5 DPKELVGLGAKSYKEKDFTQAKKYFEKACD-------LKE---NSGCFNLGVLYYQGQGVEKNLKKAA 62 (273)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHH-------TTC---HHHHHHHHHHHHHTSSSCCCHHHHH
T ss_pred ChHHHHHHHHHHHhCCCHHHHHHHHHHHHH-------CCC---HHHHHHHHHHHHcCCCcCCCHHHHH
Confidence 344556668888888888888888888876 233 3567778888888 88888887
No 166
>2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae}
Probab=96.47 E-value=0.0023 Score=44.62 Aligned_cols=57 Identities=9% Similarity=0.017 Sum_probs=46.6
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHhCCCC---hHHHHHHHHHHHHHHHcCChhhHh
Q 027539 129 RTLLESSKIALDKGKLEDAVNYGTKALARMIAVCGPYH---RTTASTYSLLAVVLYHTGDFNQVR 190 (222)
Q Consensus 129 ~~lle~g~~~l~qG~~e~A~~L~~eAL~i~eqV~G~~H---pevA~~y~~LA~vy~~~Gd~~eAi 190 (222)
.-.+..|.++...|++++|++.+.+++.+. |.+ ...+.++..++.++..+|++++|+
T Consensus 39 ~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-----p~~~~~~~~~~~~~~~~~~~~~~~~~~~a~ 98 (111)
T 2l6j_A 39 VGYSNKAMALIKLGEYTQAIQMCQQGLRYT-----STAEHVAIRSKLQYRLELAQGAVGSVQIPV 98 (111)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHTSC-----SSTTSHHHHHHHHHHHHHHHHHHHCCCCCS
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-----CCccHHHHHHHHHHHHHHHHHHHHhHhhhH
Confidence 345667999999999999999999999752 222 113888999999999999999998
No 167
>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae}
Probab=96.40 E-value=0.0082 Score=52.65 Aligned_cols=89 Identities=11% Similarity=-0.038 Sum_probs=70.1
Q ss_pred hhHHHHHHHHHHHHh---cCChHHHHHHHHHHHHHHHHHh--CCCC----hHHHHHHHHHHHHHHHcCChhhHhhchH--
Q 027539 126 ADGRTLLESSKIALD---KGKLEDAVNYGTKALARMIAVC--GPYH----RTTASTYSLLAVVLYHTGDFNQVRQSSV-- 194 (222)
Q Consensus 126 ~~a~~lle~g~~~l~---qG~~e~A~~L~~eAL~i~eqV~--G~~H----pevA~~y~~LA~vy~~~Gd~~eAi~~~~-- 194 (222)
.++...+..|...+. .|++++|.++|.+++..++... .|.+ |..+..+..+|.+|...|++++|+.+..
T Consensus 184 ~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~ 263 (514)
T 2gw1_A 184 NEADKELMNGLSNLYKRSPESYDKADESFTKAARLFEEQLDKNNEDEKLKEKLAISLEHTGIFKFLKNDPLGAHEDIKKA 263 (514)
T ss_dssp CHHHHHHHHHHHHHSSCCTTHHHHHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHHHHHHHHHHSSCHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHhhhhccHHHHHHHHHHHHHHhhhhhccCccccccChHHHHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence 457777888998887 8999999999999999988877 6666 8999999999999999999999983221
Q ss_pred --------------HhhhhhCCCCceEEEeeeec
Q 027539 195 --------------VFQCQLGDSKSSIIITSFCT 214 (222)
Q Consensus 195 --------------~~~~~~~~~~~a~~i~e~~~ 214 (222)
..+.+.|++..|+...+++.
T Consensus 264 l~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~ 297 (514)
T 2gw1_A 264 IELFPRVNSYIYMALIMADRNDSTEYYNYFDKAL 297 (514)
T ss_dssp HHHCCCHHHHHHHHHHHHTSSCCTTGGGHHHHHH
T ss_pred HhhCccHHHHHHHHHHHHHCCCHHHHHHHHHHHh
Confidence 22345667776666555543
No 168
>4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=96.31 E-value=0.007 Score=52.49 Aligned_cols=72 Identities=14% Similarity=0.017 Sum_probs=62.6
Q ss_pred ccccccCchhHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHcCChhhHh
Q 027539 118 CKHVGCTSADGRTLLESSKIALDKGKLEDAVNYGTKALARMIAVCGPYHRTTASTYSLLAVVLYHTGDFNQVR 190 (222)
Q Consensus 118 VK~~~p~s~~a~~lle~g~~~l~qG~~e~A~~L~~eAL~i~eqV~G~~HpevA~~y~~LA~vy~~~Gd~~eAi 190 (222)
.+....+...++-.++.|+++..+|++++|..++.+|+.+...+.. .|...+..+..++.++...|++.+|.
T Consensus 165 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~-~~~~~~~~~~~~g~~~~~~~~y~~A~ 236 (434)
T 4b4t_Q 165 FKKLDDKPSLVDVHLLESKVYHKLRNLAKSKASLTAARTAANSIYC-PTQTVAELDLMSGILHCEDKDYKTAF 236 (434)
T ss_dssp HTTSSCSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCC-CHHHHHHHHHHHHHHTTSSSCHHHHH
T ss_pred HHhcccchhHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHhhcCCC-chHHHHHHHHHHHHHHHHHHhHHHHH
Confidence 3444456677888999999999999999999999999999988754 45678999999999999999999998
No 169
>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe}
Probab=96.28 E-value=0.0044 Score=56.07 Aligned_cols=58 Identities=12% Similarity=0.012 Sum_probs=50.4
Q ss_pred HHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHcCChhhHhhchHHhh
Q 027539 128 GRTLLESSKIALDKGKLEDAVNYGTKALARMIAVCGPYHRTTASTYSLLAVVLYHTGDFNQVRQSSVVFQ 197 (222)
Q Consensus 128 a~~lle~g~~~l~qG~~e~A~~L~~eAL~i~eqV~G~~HpevA~~y~~LA~vy~~~Gd~~eAi~~~~~~~ 197 (222)
+......|.++...|++++|.+++.+++.+ .|+-+.+|..||.+|..+|++++|+ .++
T Consensus 516 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--------~p~~~~~~~~l~~~~~~~g~~~~A~----~~~ 573 (597)
T 2xpi_A 516 AATWANLGHAYRKLKMYDAAIDALNQGLLL--------STNDANVHTAIALVYLHKKIPGLAI----THL 573 (597)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------SSCCHHHHHHHHHHHHHTTCHHHHH----HHH
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHHh--------CCCChHHHHHHHHHHHHhCCHHHHH----HHH
Confidence 455666799999999999999999999987 2555688999999999999999999 666
No 170
>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}
Probab=96.11 E-value=0.0067 Score=51.76 Aligned_cols=24 Identities=13% Similarity=0.050 Sum_probs=11.7
Q ss_pred hHHHHHHHHHHHHHHHcCChhhHh
Q 027539 167 RTTASTYSLLAVVLYHTGDFNQVR 190 (222)
Q Consensus 167 pevA~~y~~LA~vy~~~Gd~~eAi 190 (222)
|+.+..++++|.+|..+|++++|+
T Consensus 197 p~~~~~~~~la~~~~~~g~~~eA~ 220 (291)
T 3mkr_A 197 SPTLLLLNGQAACHMAQGRWEAAE 220 (291)
T ss_dssp CCCHHHHHHHHHHHHHTTCHHHHH
T ss_pred CCcHHHHHHHHHHHHHcCCHHHHH
Confidence 333444455555555555555554
No 171
>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A
Probab=96.07 E-value=0.016 Score=38.70 Aligned_cols=48 Identities=19% Similarity=0.238 Sum_probs=40.3
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHcC
Q 027539 129 RTLLESSKIALDKGKLEDAVNYGTKALARMIAVCGPYHRTTASTYSLLAVVLYHTG 184 (222)
Q Consensus 129 ~~lle~g~~~l~qG~~e~A~~L~~eAL~i~eqV~G~~HpevA~~y~~LA~vy~~~G 184 (222)
.-.+..|.++...|++++|...+.+++.+ +|+....+.+||.++..+|
T Consensus 44 ~~~~~l~~~~~~~~~~~~A~~~~~~a~~~--------~p~~~~~~~~l~~~~~~~g 91 (91)
T 1na3_A 44 EAWYNLGNAYYKQGDYDEAIEYYQKALEL--------DPNNAEAKQNLGNAKQKQG 91 (91)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHhhHHHHHHHHHHHHhc--------CCCCHHHHHHHHHHHHhcC
Confidence 34566799999999999999999999986 4555678899999998776
No 172
>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A
Probab=96.01 E-value=0.0089 Score=53.01 Aligned_cols=52 Identities=19% Similarity=0.243 Sum_probs=32.1
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHcCChhhHh
Q 027539 131 LLESSKIALDKGKLEDAVNYGTKALARMIAVCGPYHRTTASTYSLLAVVLYHTGDFNQVR 190 (222)
Q Consensus 131 lle~g~~~l~qG~~e~A~~L~~eAL~i~eqV~G~~HpevA~~y~~LA~vy~~~Gd~~eAi 190 (222)
....|.++...|++++|.+.|.+++.+ .|+....+..+|.+|+.+|++++|+
T Consensus 313 ~~~l~~~~~~~~~~~~A~~~~~~a~~~--------~~~~~~~~~~la~~~~~~g~~~~A~ 364 (537)
T 3fp2_A 313 YYHRGQMYFILQDYKNAKEDFQKAQSL--------NPENVYPYIQLACLLYKQGKFTESE 364 (537)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHH--------CTTCSHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHh--------CCCCHHHHHHHHHHHHHcCCHHHHH
Confidence 444477777777777777777777663 2223345666666666666666665
No 173
>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A*
Probab=95.91 E-value=0.011 Score=50.04 Aligned_cols=59 Identities=15% Similarity=0.044 Sum_probs=46.1
Q ss_pred ccCchhHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHhCCCChHH--HHHHHHHHHHHHHcCChhhHh
Q 027539 122 GCTSADGRTLLESSKIALDKGKLEDAVNYGTKALARMIAVCGPYHRTT--ASTYSLLAVVLYHTGDFNQVR 190 (222)
Q Consensus 122 ~p~s~~a~~lle~g~~~l~qG~~e~A~~L~~eAL~i~eqV~G~~Hpev--A~~y~~LA~vy~~~Gd~~eAi 190 (222)
.|...++ .+..|..+..+|++++|++.|.+++.. +|+- +..+.+|+.+|..+|+.++|+
T Consensus 215 ~P~~~~~--~~~la~~l~~~g~~~~A~~~l~~~l~~--------~p~~~~~~a~~~l~~~~~~~g~~~~a~ 275 (287)
T 3qou_A 215 NPEDAAL--ATQLALQLHQVGRNEEALELLFGHLRX--------DLTAADGQTRXTFQEILAALGTGDALA 275 (287)
T ss_dssp CTTCHHH--HHHHHHHHHHTTCHHHHHHHHHHHHHH--------CTTGGGGHHHHHHHHHHHHHCTTCHHH
T ss_pred CCccHHH--HHHHHHHHHHcccHHHHHHHHHHHHhc--------ccccccchHHHHHHHHHHHcCCCCcHH
Confidence 3444444 445589999999999999999988885 4554 677888999999999999988
No 174
>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}
Probab=95.86 E-value=0.0047 Score=59.23 Aligned_cols=66 Identities=17% Similarity=-0.052 Sum_probs=44.3
Q ss_pred ccCchhHHHHHHHHHHHHhcCChHHHHHHHHHHHHHH--------------------------HHHhCCCChHHHHHHHH
Q 027539 122 GCTSADGRTLLESSKIALDKGKLEDAVNYGTKALARM--------------------------IAVCGPYHRTTASTYSL 175 (222)
Q Consensus 122 ~p~s~~a~~lle~g~~~l~qG~~e~A~~L~~eAL~i~--------------------------eqV~G~~HpevA~~y~~ 175 (222)
.|....+ .+..|.++..+|++++|++.|.+|+.+- +++. ...|+-+..|.+
T Consensus 463 ~p~~~~a--~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~~lg~~~~~~g~~~~~~~~~~al-~~~P~~~~a~~~ 539 (681)
T 2pzi_A 463 VGWRWRL--VWYRAVAELLTGDYDSATKHFTEVLDTFPGELAPKLALAATAELAGNTDEHKFYQTVW-STNDGVISAAFG 539 (681)
T ss_dssp HCCCHHH--HHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCSHHHHHHHHHHHHHTCCCTTCHHHHHH-HHCTTCHHHHHH
T ss_pred CcchHHH--HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCChHHHHHHHHHH-HhCCchHHHHHH
Confidence 4444444 4556999999999999999999988742 1111 124555556777
Q ss_pred HHHHHHHcCChhhHh
Q 027539 176 LAVVLYHTGDFNQVR 190 (222)
Q Consensus 176 LA~vy~~~Gd~~eAi 190 (222)
||.+|..+|++++|+
T Consensus 540 lg~~~~~~g~~~~A~ 554 (681)
T 2pzi_A 540 LARARSAEGDRVGAV 554 (681)
T ss_dssp HHHHHHHTTCHHHHH
T ss_pred HHHHHHHcCCHHHHH
Confidence 777777777777777
No 175
>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}
Probab=95.68 E-value=0.02 Score=48.78 Aligned_cols=54 Identities=24% Similarity=0.193 Sum_probs=44.6
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHcCChhhHh
Q 027539 129 RTLLESSKIALDKGKLEDAVNYGTKALARMIAVCGPYHRTTASTYSLLAVVLYHTGDFNQVR 190 (222)
Q Consensus 129 ~~lle~g~~~l~qG~~e~A~~L~~eAL~i~eqV~G~~HpevA~~y~~LA~vy~~~Gd~~eAi 190 (222)
.-.+..|.++..+|++++|.+.|.+|+.+. |.+| ..+.+++.++..+|++++|.
T Consensus 201 ~~~~~la~~~~~~g~~~eA~~~l~~al~~~-----p~~~---~~l~~l~~~~~~~g~~~eaa 254 (291)
T 3mkr_A 201 LLLNGQAACHMAQGRWEAAEGVLQEALDKD-----SGHP---ETLINLVVLSQHLGKPPEVT 254 (291)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-----TTCH---HHHHHHHHHHHHTTCCHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-----CCCH---HHHHHHHHHHHHcCCCHHHH
Confidence 345556999999999999999999999763 4454 45899999999999998753
No 176
>1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1
Probab=95.43 E-value=0.022 Score=46.54 Aligned_cols=51 Identities=16% Similarity=0.197 Sum_probs=38.8
Q ss_pred HHHHHHHHHHh----cCChHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHH----cCChhhHh
Q 027539 130 TLLESSKIALD----KGKLEDAVNYGTKALARMIAVCGPYHRTTASTYSLLAVVLYH----TGDFNQVR 190 (222)
Q Consensus 130 ~lle~g~~~l~----qG~~e~A~~L~~eAL~i~eqV~G~~HpevA~~y~~LA~vy~~----~Gd~~eAi 190 (222)
..+..|.++.. +|++++|+++|.+|+.+ | -+.++.+||.+|.. .|++++|+
T Consensus 40 a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~-----~-----~~~a~~~lg~~~~~g~~~~~~~~~A~ 98 (273)
T 1ouv_A 40 GCFNLGVLYYQGQGVEKNLKKAASFYAKACDL-----N-----YSNGCHLLGNLYYSGQGVSQNTNKAL 98 (273)
T ss_dssp HHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT-----T-----CHHHHHHHHHHHHHTSSSCCCHHHHH
T ss_pred HHHHHHHHHHcCCCcCCCHHHHHHHHHHHHHC-----C-----CHHHHHHHHHHHhCCCCcccCHHHHH
Confidence 34556888888 88888888888888765 2 24567778888888 88888887
No 177
>1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1
Probab=95.31 E-value=0.025 Score=45.59 Aligned_cols=61 Identities=11% Similarity=0.016 Sum_probs=42.9
Q ss_pred hhHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHhCCCCh-HHHHHHHHHHHHHHHcCChhhHh
Q 027539 126 ADGRTLLESSKIALDKGKLEDAVNYGTKALARMIAVCGPYHR-TTASTYSLLAVVLYHTGDFNQVR 190 (222)
Q Consensus 126 ~~a~~lle~g~~~l~qG~~e~A~~L~~eAL~i~eqV~G~~Hp-evA~~y~~LA~vy~~~Gd~~eAi 190 (222)
.+.+..|+-|-..+.....+ .+.+++.++++++-...| +-..|+.+||..||++|+|++|.
T Consensus 30 ~~~~~~F~ya~~Lv~S~~~~----~~~~gI~lLe~ll~~~~p~~~rd~lY~LAv~~~kl~~Y~~A~ 91 (152)
T 1pc2_A 30 VSKSTQFEYAWCLVRSKYND----DIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLKEYEKAL 91 (152)
T ss_dssp CCHHHHHHHHHHHHTCSSHH----HHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTSCHHHHH
T ss_pred CcHHHHHHHHHHHHcCCCHH----HHHHHHHHHHHHHhcCCccchHHHHHHHHHHHHHccCHHHHH
Confidence 34555666688888777333 333444444444443357 67899999999999999999999
No 178
>2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7
Probab=94.88 E-value=0.017 Score=48.85 Aligned_cols=60 Identities=12% Similarity=-0.083 Sum_probs=46.7
Q ss_pred ccCchhHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHcCChhhHh
Q 027539 122 GCTSADGRTLLESSKIALDKGKLEDAVNYGTKALARMIAVCGPYHRTTASTYSLLAVVLYHTGDFNQVR 190 (222)
Q Consensus 122 ~p~s~~a~~lle~g~~~l~qG~~e~A~~L~~eAL~i~eqV~G~~HpevA~~y~~LA~vy~~~Gd~~eAi 190 (222)
.|.+..+... .|..+..+|++++|.+.|.+++.+ .|.+++. .+.+++.++..+|++++|+
T Consensus 95 ~p~~~~~~~~--~~~~~~~~~~~~~A~~~~~~al~~-----~p~~~~~--~~~~~~~~~~~~~~~~~A~ 154 (308)
T 2ond_A 95 LKKNMLLYFA--YADYEESRMKYEKVHSIYNRLLAI-----EDIDPTL--VYIQYMKFARRAEGIKSGR 154 (308)
T ss_dssp TTTCHHHHHH--HHHHHHHTTCHHHHHHHHHHHHTS-----SSSCTHH--HHHHHHHHHHHHHCHHHHH
T ss_pred CcccHHHHHH--HHHHHHhcCCHHHHHHHHHHHHhc-----cccCccH--HHHHHHHHHHHhcCHHHHH
Confidence 3455555444 488999999999999999999974 3444432 7899999999999999997
No 179
>4a5x_A MITD1, MIT domain-containing protein 1; protein transport, ESCRT, cytokinesis, midbody; HET: P15; 1.91A {Homo sapiens}
Probab=94.87 E-value=0.13 Score=37.36 Aligned_cols=63 Identities=13% Similarity=0.105 Sum_probs=49.7
Q ss_pred cccccCchhHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHh-CCCChHHHHHHHHHHHHHH
Q 027539 119 KHVGCTSADGRTLLESSKIALDKGKLEDAVNYGTKALARMIAVC-GPYHRTTASTYSLLAVVLY 181 (222)
Q Consensus 119 K~~~p~s~~a~~lle~g~~~l~qG~~e~A~~L~~eAL~i~eqV~-G~~HpevA~~y~~LA~vy~ 181 (222)
.|-.|.|.-|.+++..|.-.-..|++++|+.+|.+|+..+.++. +.-.|..-..+..-..-|.
T Consensus 7 ~~~~~~~~~A~~lv~~Ave~D~~g~y~eAl~lY~~Aie~ll~alk~e~d~~~k~~lr~K~~eYl 70 (86)
T 4a5x_A 7 HHMDPQSTAAATVLKRAVELDSESRYPQALVCYQEGIDLLLQVLKGTKDNTKRCNLREKISKYM 70 (86)
T ss_dssp ----CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTCCCHHHHHHHHHHHHHHH
T ss_pred ccCChHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHH
Confidence 36789999999999999999999999999999999999999876 5667776666665554443
No 180
>3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp}
Probab=94.68 E-value=0.033 Score=44.80 Aligned_cols=54 Identities=26% Similarity=0.367 Sum_probs=42.0
Q ss_pred hhHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHcC----ChhhHh
Q 027539 126 ADGRTLLESSKIALDKGKLEDAVNYGTKALARMIAVCGPYHRTTASTYSLLAVVLYHTG----DFNQVR 190 (222)
Q Consensus 126 ~~a~~lle~g~~~l~qG~~e~A~~L~~eAL~i~eqV~G~~HpevA~~y~~LA~vy~~~G----d~~eAi 190 (222)
.++...+..|.++..+|++++|.++|.+|+.. | | +.++.+||.+|.. | ++++|+
T Consensus 16 g~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~-----g--~---~~a~~~lg~~y~~-~g~~~~~~~A~ 73 (212)
T 3rjv_A 16 GDRRAQYYLADTWVSSGDYQKAEYWAQKAAAQ-----G--D---GDALALLAQLKIR-NPQQADYPQAR 73 (212)
T ss_dssp TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHT-----T--C---HHHHHHHHHHTTS-STTSCCHHHHH
T ss_pred CCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHc-----C--C---HHHHHHHHHHHHc-CCCCCCHHHHH
Confidence 44556667799999999999999999998762 2 3 4567788888887 6 788888
No 181
>1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1
Probab=93.86 E-value=0.19 Score=37.87 Aligned_cols=57 Identities=18% Similarity=0.082 Sum_probs=46.3
Q ss_pred hHHHHHHHHHHHHh----cCChHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHH----cCChhhHhhchHHhh
Q 027539 127 DGRTLLESSKIALD----KGKLEDAVNYGTKALARMIAVCGPYHRTTASTYSLLAVVLYH----TGDFNQVRQSSVVFQ 197 (222)
Q Consensus 127 ~a~~lle~g~~~l~----qG~~e~A~~L~~eAL~i~eqV~G~~HpevA~~y~~LA~vy~~----~Gd~~eAi~~~~~~~ 197 (222)
++.-.+..|.++.. ++++++|.++|.+|... | | +.++.+||.+|.. .+|+++|+ .++
T Consensus 56 ~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~-----g--~---~~a~~~Lg~~y~~G~g~~~d~~~A~----~~~ 120 (138)
T 1klx_A 56 SGNGCRFLGDFYENGKYVKKDLRKAAQYYSKACGL-----N--D---QDGCLILGYKQYAGKGVVKNEKQAV----KTF 120 (138)
T ss_dssp CHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHT-----T--C---HHHHHHHHHHHHHTSSSCCCHHHHH----HHH
T ss_pred CHHHHHHHHHHHHcCCCCCccHHHHHHHHHHHHcC-----C--C---HHHHHHHHHHHHCCCCCCcCHHHHH----HHH
Confidence 34455666999998 88999999999999753 2 2 5678899999999 99999999 666
No 182
>2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7
Probab=93.83 E-value=0.12 Score=43.57 Aligned_cols=67 Identities=12% Similarity=0.033 Sum_probs=46.5
Q ss_pred ccCchhHHHHHHHHHHHH-------hcCChHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHcCChhhHh
Q 027539 122 GCTSADGRTLLESSKIAL-------DKGKLEDAVNYGTKALARMIAVCGPYHRTTASTYSLLAVVLYHTGDFNQVR 190 (222)
Q Consensus 122 ~p~s~~a~~lle~g~~~l-------~qG~~e~A~~L~~eAL~i~eqV~G~~HpevA~~y~~LA~vy~~~Gd~~eAi 190 (222)
.|.++++... .|..+. .+|+.+.+...+.+|+.++++..-.++|+-+..+..+|.++..+|++++|.
T Consensus 46 ~p~~~~~w~~--~~~~~~~~~~~l~~~g~~~~~~~~~~~A~~~~~rAl~~~~p~~~~~~~~~~~~~~~~~~~~~A~ 119 (308)
T 2ond_A 46 LGHHPDIWYE--AAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKNMLLYFAYADYEESRMKYEKVH 119 (308)
T ss_dssp HTTCHHHHHH--HHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHHHHTTTTTTCHHHHHHHHHHHHHTTCHHHHH
T ss_pred cCCCHHHHHH--HHHHHHHhchhhhhccchhhcccchHHHHHHHHHHHHHhCcccHHHHHHHHHHHHhcCCHHHHH
Confidence 3455544433 355554 468875455555566666666655557888889999999999999999998
No 183
>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis}
Probab=93.59 E-value=0.026 Score=40.22 Aligned_cols=37 Identities=11% Similarity=-0.054 Sum_probs=29.5
Q ss_pred HHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHcCChhhHh
Q 027539 146 DAVNYGTKALARMIAVCGPYHRTTASTYSLLAVVLYHTGDFNQVR 190 (222)
Q Consensus 146 ~A~~L~~eAL~i~eqV~G~~HpevA~~y~~LA~vy~~~Gd~~eAi 190 (222)
+|++.|.+++. ..|+-+..+.+||.+|..+|++++|+
T Consensus 3 ~a~~~~~~al~--------~~p~~~~~~~~lg~~~~~~g~~~~A~ 39 (115)
T 2kat_A 3 AITERLEAMLA--------QGTDNMLLRFTLGKTYAEHEQFDAAL 39 (115)
T ss_dssp CHHHHHHHHHT--------TTCCCHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHHH--------hCCCcHHHHHHHHHHHHHccCHHHHH
Confidence 45666666664 45666789999999999999999998
No 184
>3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens}
Probab=92.92 E-value=0.36 Score=39.44 Aligned_cols=64 Identities=8% Similarity=0.015 Sum_probs=53.4
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHhCCCCh-HHHHHHHHHHHHHHHcCChhhHhhchHHhh
Q 027539 130 TLLESSKIALDKGKLEDAVNYGTKALARMIAVCGPYHR-TTASTYSLLAVVLYHTGDFNQVRQSSVVFQ 197 (222)
Q Consensus 130 ~lle~g~~~l~qG~~e~A~~L~~eAL~i~eqV~G~~Hp-evA~~y~~LA~vy~~~Gd~~eAi~~~~~~~ 197 (222)
.+++..+..++.|.|+.|..+..-++++.++=-...-| .-+..+..+|..+|..|.|.+|. .++
T Consensus 22 ~l~dqik~L~d~~LY~sA~~La~lLlSl~~~~~~~~sp~~~~~~l~~ladalf~~~eyrrA~----~~y 86 (167)
T 3ffl_A 22 NVIDHVRDMAAAGLHSNVRLLSSLLLTLSNNNPELFSPPQKYQLLVYHADSLFHDKEYRNAV----SKY 86 (167)
T ss_dssp CHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSTTSSCHHHHHHHHHHHHHHHHHTTCHHHHH----HHH
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHHHhhcCCcccccHHHHHHHHHHHHHHHHcccHHHHHH----HHH
Confidence 47889999999999999999999999997662222233 34778999999999999999999 666
No 185
>4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis}
Probab=92.72 E-value=0.18 Score=44.08 Aligned_cols=54 Identities=15% Similarity=0.014 Sum_probs=45.7
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHHHHHHHhCCCChH-HHHHHHHHHHHHHHcCChhhHh
Q 027539 131 LLESSKIALDKGKLEDAVNYGTKALARMIAVCGPYHRT-TASTYSLLAVVLYHTGDFNQVR 190 (222)
Q Consensus 131 lle~g~~~l~qG~~e~A~~L~~eAL~i~eqV~G~~Hpe-vA~~y~~LA~vy~~~Gd~~eAi 190 (222)
.+..|.++...|++++|+..|.+++ -|+.-|. ......++|.++.++|+.++|.
T Consensus 174 ~~~LG~al~~LG~~~eAl~~l~~a~------~g~~~P~~~~da~~~~glaL~~lGr~deA~ 228 (282)
T 4f3v_A 174 GVAHGVAAANLALFTEAERRLTEAN------DSPAGEACARAIAWYLAMARRSQGNESAAV 228 (282)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHH------TSTTTTTTHHHHHHHHHHHHHHHTCHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHh------cCCCCccccHHHHHHHHHHHHHcCCHHHHH
Confidence 4445999999999999999988876 3664476 7778899999999999999999
No 186
>3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp}
Probab=92.58 E-value=0.13 Score=41.24 Aligned_cols=60 Identities=8% Similarity=0.091 Sum_probs=45.3
Q ss_pred HHHHHHHHHHHHh----cCChHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHH----cCChhhHhhchHHhh
Q 027539 128 GRTLLESSKIALD----KGKLEDAVNYGTKALARMIAVCGPYHRTTASTYSLLAVVLYH----TGDFNQVRQSSVVFQ 197 (222)
Q Consensus 128 a~~lle~g~~~l~----qG~~e~A~~L~~eAL~i~eqV~G~~HpevA~~y~~LA~vy~~----~Gd~~eAi~~~~~~~ 197 (222)
+...+..|.++.. .+++++|+++|.+|+.. |+ ..+.+.++.+||.+|.. .+++++|+ .++
T Consensus 85 ~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~-----~~-~~~~~~a~~~Lg~~y~~g~g~~~d~~~A~----~~~ 152 (212)
T 3rjv_A 85 KSGEIVLARVLVNRQAGATDVAHAITLLQDAARD-----SE-SDAAVDAQMLLGLIYASGVHGPEDDVKAS----EYF 152 (212)
T ss_dssp HHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHTSS-----TT-SHHHHHHHHHHHHHHHHTSSSSCCHHHHH----HHH
T ss_pred HHHHHHHHHHHHcCCCCccCHHHHHHHHHHHHHc-----CC-CcchHHHHHHHHHHHHcCCCCCCCHHHHH----HHH
Confidence 3345556888887 78888888888888753 11 11568889999999999 88999999 665
No 187
>4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis}
Probab=91.34 E-value=0.43 Score=41.69 Aligned_cols=59 Identities=10% Similarity=0.031 Sum_probs=38.5
Q ss_pred HHHHHHHHhcCChHHHHHHHHHH--------------------------HHHHHHHhCCCChHH-HHHHHHHHHHHHHcC
Q 027539 132 LESSKIALDKGKLEDAVNYGTKA--------------------------LARMIAVCGPYHRTT-ASTYSLLAVVLYHTG 184 (222)
Q Consensus 132 le~g~~~l~qG~~e~A~~L~~eA--------------------------L~i~eqV~G~~Hpev-A~~y~~LA~vy~~~G 184 (222)
++-|..+.++|++++|.++|.+. +..+++....-+|.. +..+.+|+.++..+|
T Consensus 106 LayA~~L~~~g~y~eA~~~l~~~~~~~p~~~~~~~~a~l~~~~~r~~dA~~~l~~a~~~~d~~~~~~a~~~LG~al~~LG 185 (282)
T 4f3v_A 106 MGFAACEAAQGNYADAMEALEAAPVAGSEHLVAWMKAVVYGAAERWTDVIDQVKSAGKWPDKFLAGAAGVAHGVAAANLA 185 (282)
T ss_dssp HHHHHHHHHHTCHHHHHHHHTSSCCTTCHHHHHHHHHHHHHHTTCHHHHHHHHTTGGGCSCHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHhcCCchHHHHHHHHHHHHcCCHHHHHHHHHHhhccCCcccHHHHHHHHHHHHHHCC
Confidence 34467777777777777777533 333333333335654 457778888888888
Q ss_pred ChhhHh
Q 027539 185 DFNQVR 190 (222)
Q Consensus 185 d~~eAi 190 (222)
++++|+
T Consensus 186 ~~~eAl 191 (282)
T 4f3v_A 186 LFTEAE 191 (282)
T ss_dssp CHHHHH
T ss_pred CHHHHH
Confidence 888887
No 188
>3o48_A Mitochondria fission 1 protein; tetratricopeptide repeat fold, TPR, scaffold, peroxisome, membrane fission, protein binding; 1.75A {Saccharomyces cerevisiae} PDB: 2pqr_A 2pqn_A 3uux_A
Probab=91.24 E-value=0.26 Score=38.96 Aligned_cols=87 Identities=8% Similarity=0.105 Sum_probs=53.3
Q ss_pred CCCCCCCcCCcccccccccccccCchhHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHhCCCCh-HHHHHHHHHHHH
Q 027539 101 DCPNPFTRDDIVSMVPVCKHVGCTSADGRTLLESSKIALDKGKLEDAVNYGTKALARMIAVCGPYHR-TTASTYSLLAVV 179 (222)
Q Consensus 101 ~~~~~F~~~DI~ni~PvVK~~~p~s~~a~~lle~g~~~l~qG~~e~A~~L~~eAL~i~eqV~G~~Hp-evA~~y~~LA~v 179 (222)
|...|++++|+..+-=.+-...--.+....-|+-|-..+.....+ -..+++.+++.++. .+| ..-.|+..||.-
T Consensus 13 ~~~~~~~~eeL~~l~~qy~~E~~~~vs~qt~F~yAw~Lv~S~~~~----d~~~GI~LLe~l~~-~~~~~~Rd~LYyLAvg 87 (134)
T 3o48_A 13 DAYEPLYPQQLEILRQQVVSEGGPTATIQSRFNYAWGLIKSTDVN----DERLGVKILTDIYK-EAESRRRECLYYLTIG 87 (134)
T ss_dssp GGGCCCCHHHHHHHHHHHHHTTGGGSCHHHHHHHHHHHHHSSCHH----HHHHHHHHHHHHHH-HCGGGHHHHHHHHHHH
T ss_pred HhcCCCCHHHHHHHHHHHHHHhCCCCChhhHHHHHHHHHcCCCHH----HHHHHHHHHHHHHh-cCcchhHHHHHHHHHH
Confidence 344567777765444333221112334455666676666665433 23345555555553 246 578999999999
Q ss_pred HHHcCChhhHhhc
Q 027539 180 LYHTGDFNQVRQS 192 (222)
Q Consensus 180 y~~~Gd~~eAi~~ 192 (222)
+|++|+|++|..+
T Consensus 88 ~yklgdY~~Ar~y 100 (134)
T 3o48_A 88 CYKLGEYSMAKRY 100 (134)
T ss_dssp HHHHTCHHHHHHH
T ss_pred HHHhhhHHHHHHH
Confidence 9999999999933
No 189
>3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A
Probab=90.92 E-value=0.3 Score=44.56 Aligned_cols=60 Identities=17% Similarity=0.017 Sum_probs=48.3
Q ss_pred cCchhHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHcCChhhHhhchHHhh
Q 027539 123 CTSADGRTLLESSKIALDKGKLEDAVNYGTKALARMIAVCGPYHRTTASTYSLLAVVLYHTGDFNQVRQSSVVFQ 197 (222)
Q Consensus 123 p~s~~a~~lle~g~~~l~qG~~e~A~~L~~eAL~i~eqV~G~~HpevA~~y~~LA~vy~~~Gd~~eAi~~~~~~~ 197 (222)
|..+.+...+ |-.++.+|++++|...+++|+.+- |+ +..|..+|.++...|++++|+ +.+
T Consensus 274 ~~~a~~~~al--al~~l~~gd~d~A~~~l~rAl~Ln--------~s-~~a~~llG~~~~~~G~~~eA~----e~~ 333 (372)
T 3ly7_A 274 NNLSIIYQIK--AVSALVKGKTDESYQAINTGIDLE--------MS-WLNYVLLGKVYEMKGMNREAA----DAY 333 (372)
T ss_dssp TTCHHHHHHH--HHHHHHHTCHHHHHHHHHHHHHHC--------CC-HHHHHHHHHHHHHTTCHHHHH----HHH
T ss_pred CcCHHHHHHH--HHHHHhCCCHHHHHHHHHHHHhcC--------CC-HHHHHHHHHHHHHCCCHHHHH----HHH
Confidence 4444454444 667777899999999999999983 33 568899999999999999999 666
No 190
>2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli}
Probab=90.78 E-value=0.36 Score=43.20 Aligned_cols=51 Identities=20% Similarity=0.227 Sum_probs=33.5
Q ss_pred HHHHHHHHHHh----cCChHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHH----cCChhhHh
Q 027539 130 TLLESSKIALD----KGKLEDAVNYGTKALARMIAVCGPYHRTTASTYSLLAVVLYH----TGDFNQVR 190 (222)
Q Consensus 130 ~lle~g~~~l~----qG~~e~A~~L~~eAL~i~eqV~G~~HpevA~~y~~LA~vy~~----~Gd~~eAi 190 (222)
-.+..|.++.. ++++++|.++|.+|+.. | + +.++.+||.+|+. .||+++|+
T Consensus 365 a~~~Lg~~y~~g~g~~~~~~~A~~~~~~A~~~-----~--~---~~a~~~Lg~~y~~g~g~~~d~~~A~ 423 (490)
T 2xm6_A 365 AQFNLGNALLQGKGVKKDEQQAAIWMRKAAEQ-----G--L---SAAQVQLGEIYYYGLGVERDYVQAW 423 (490)
T ss_dssp HHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT-----T--C---HHHHHHHHHHHHHTSSSCCCHHHHH
T ss_pred HHHHHHHHHHcCCCCCCCHHHHHHHHHHHHhC-----C--C---HHHHHHHHHHHHcCCCCCCCHHHHH
Confidence 34445666666 66777777777776652 2 2 4467777777777 77777777
No 191
>2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7
Probab=90.67 E-value=0.38 Score=43.52 Aligned_cols=58 Identities=14% Similarity=0.121 Sum_probs=45.6
Q ss_pred HHHHHHHh-------cCChHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHcCChhhHh
Q 027539 133 ESSKIALD-------KGKLEDAVNYGTKALARMIAVCGPYHRTTASTYSLLAVVLYHTGDFNQVR 190 (222)
Q Consensus 133 e~g~~~l~-------qG~~e~A~~L~~eAL~i~eqV~G~~HpevA~~y~~LA~vy~~~Gd~~eAi 190 (222)
..|..+.. +|+++.|..+..+|+.++++......|+-...+..+|.++..+|++++|.
T Consensus 277 ~~~~~~~~~~~~~~~~g~~~~a~~~~~~A~~~~~~Al~~~~p~~~~l~~~~~~~~~~~g~~~~A~ 341 (530)
T 2ooe_A 277 EAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKNMLLYFAYADYEESRMKYEKVH 341 (530)
T ss_dssp HHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHHHHHTTTTCSSCHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHhchhhhhccchhhhhhhhHHHHHHHHHHHHHhCcccHHHHHHHHHHHHhcCCHHHHH
Confidence 34666654 79988666666677777777775557888889999999999999999998
No 192
>3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens}
Probab=90.39 E-value=0.58 Score=38.22 Aligned_cols=79 Identities=13% Similarity=0.018 Sum_probs=57.0
Q ss_pred hHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHhCCC-----------------ChHHHHHHHHHHHHHHHcCChhhH
Q 027539 127 DGRTLLESSKIALDKGKLEDAVNYGTKALARMIAVCGPY-----------------HRTTASTYSLLAVVLYHTGDFNQV 189 (222)
Q Consensus 127 ~a~~lle~g~~~l~qG~~e~A~~L~~eAL~i~eqV~G~~-----------------HpevA~~y~~LA~vy~~~Gd~~eA 189 (222)
.++.++--|..+..+|+|..|...|.+||.+..-+.-.- -+.-+.+-..+|..|.++|++.+|
T Consensus 62 ~~~~l~~ladalf~~~eyrrA~~~y~qALq~~k~l~k~~s~~~~~~~~ss~p~s~~~~~e~Elkykia~C~~~l~~~~~A 141 (167)
T 3ffl_A 62 KYQLLVYHADSLFHDKEYRNAVSKYTMALQQKKALSKTSKVRPSTGNSASTPQSQCLPSEIEVKYKLAECYTVLKQDKDA 141 (167)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHCC--------------------CCCCHHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHhcCCCccccccccCCCcccccccchHHHHHHHHHHHHHHCCHHHH
Confidence 455677779999999999999999999999888432110 112235667799999999999999
Q ss_pred hhchHHhhhhhCCCCceEEEeeeechh
Q 027539 190 RQSSVVFQCQLGDSKSSIIITSFCTEV 216 (222)
Q Consensus 190 i~~~~~~~~~~~~~~~a~~i~e~~~~~ 216 (222)
+ .+++ ++-..+|+..|
T Consensus 142 i---~~Le--------~Ip~k~Rt~kv 157 (167)
T 3ffl_A 142 I---AILD--------GIPSRQRTPKI 157 (167)
T ss_dssp H---HHHH--------TSCGGGCCHHH
T ss_pred H---HHHh--------cCCchhcCHHH
Confidence 9 2233 55556666544
No 193
>1y8m_A FIS1; mitochondria, unknown function; NMR {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=90.23 E-value=0.28 Score=39.16 Aligned_cols=62 Identities=6% Similarity=0.080 Sum_probs=41.5
Q ss_pred hhHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHhCCCCh-HHHHHHHHHHHHHHHcCChhhHhhc
Q 027539 126 ADGRTLLESSKIALDKGKLEDAVNYGTKALARMIAVCGPYHR-TTASTYSLLAVVLYHTGDFNQVRQS 192 (222)
Q Consensus 126 ~~a~~lle~g~~~l~qG~~e~A~~L~~eAL~i~eqV~G~~Hp-evA~~y~~LA~vy~~~Gd~~eAi~~ 192 (222)
+..+.-|+-|-..+.....+ -..+++.++++++- .+| .--.|+..||.-||++|+|++|..|
T Consensus 37 vs~~t~F~YAw~Lv~S~~~~----di~~GI~LLe~l~~-~~~~~~RdcLYyLAvg~ykl~~Y~~Ar~y 99 (144)
T 1y8m_A 37 ATIQSRFNYAWGLIKSTDVN----DERLGVKILTDIYK-EAESRRRECLYYLTIGCYKLGEYSMAKRY 99 (144)
T ss_dssp SCHHHHHHHHHHHHHSSSHH----HHHHHHHHHHHHHH-HCCSTHHHHHHHHHHHHHTTTCHHHHHHH
T ss_pred CcHHHHHHHHHHHHcCCCHH----HHHHHHHHHHHHHh-cCccchhHHHHHHHHHHHHhhhHHHHHHH
Confidence 44555666676666665433 22344555555553 244 5778999999999999999999933
No 194
>2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7
Probab=89.78 E-value=0.43 Score=43.17 Aligned_cols=60 Identities=10% Similarity=-0.098 Sum_probs=46.8
Q ss_pred ccCchhHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHcCChhhHh
Q 027539 122 GCTSADGRTLLESSKIALDKGKLEDAVNYGTKALARMIAVCGPYHRTTASTYSLLAVVLYHTGDFNQVR 190 (222)
Q Consensus 122 ~p~s~~a~~lle~g~~~l~qG~~e~A~~L~~eAL~i~eqV~G~~HpevA~~y~~LA~vy~~~Gd~~eAi 190 (222)
.|.+..+... .|......|++++|.++|.+++.+ .|.+| +..+.+++.++..+|++++|.
T Consensus 317 ~p~~~~l~~~--~~~~~~~~g~~~~A~~~~~~al~~-----~p~~~--~~~~~~~~~~~~~~~~~~~A~ 376 (530)
T 2ooe_A 317 LKKNMLLYFA--YADYEESRMKYEKVHSIYNRLLAI-----EDIDP--TLVYIQYMKFARRAEGIKSGR 376 (530)
T ss_dssp CSSCHHHHHH--HHHHHHHTTCHHHHHHHHHHHHHS-----SSSCH--HHHHHHHHHHHHHHHHHHHHH
T ss_pred CcccHHHHHH--HHHHHHhcCCHHHHHHHHHHHhCc-----cccCc--hHHHHHHHHHHHHhcCHHHHH
Confidence 4555555444 488888999999999999999975 34443 358999999999999999987
No 195
>2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli}
Probab=89.71 E-value=0.79 Score=40.95 Aligned_cols=55 Identities=16% Similarity=0.244 Sum_probs=39.6
Q ss_pred hhHHHHHHHHHHHHh----cCChHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHH----cCChhhHh
Q 027539 126 ADGRTLLESSKIALD----KGKLEDAVNYGTKALARMIAVCGPYHRTTASTYSLLAVVLYH----TGDFNQVR 190 (222)
Q Consensus 126 ~~a~~lle~g~~~l~----qG~~e~A~~L~~eAL~i~eqV~G~~HpevA~~y~~LA~vy~~----~Gd~~eAi 190 (222)
.+++..+..|..+.. ++++++|+++|.+|+.. | | +.++..||.+|.. .+++++|+
T Consensus 37 g~~~a~~~lg~~y~~g~~~~~~~~~A~~~~~~a~~~-----~--~---~~a~~~Lg~~y~~g~g~~~~~~~A~ 99 (490)
T 2xm6_A 37 GEAKAQLELGYRYFQGNETTKDLTQAMDWFRRAAEQ-----G--Y---TPAEYVLGLRYMNGEGVPQDYAQAV 99 (490)
T ss_dssp TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT-----T--C---HHHHHHHHHHHHHTSSSCCCHHHHH
T ss_pred CCHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHHC-----C--C---HHHHHHHHHHHHcCCCCCCCHHHHH
Confidence 345556666888887 78888888888888652 2 2 3567778888887 78888877
No 196
>1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A
Probab=89.38 E-value=1.9 Score=33.43 Aligned_cols=59 Identities=12% Similarity=0.028 Sum_probs=43.6
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHhCCCCh-HHHHHHHHHHHHHHHcCChhhHhh
Q 027539 129 RTLLESSKIALDKGKLEDAVNYGTKALARMIAVCGPYHR-TTASTYSLLAVVLYHTGDFNQVRQ 191 (222)
Q Consensus 129 ~~lle~g~~~l~qG~~e~A~~L~~eAL~i~eqV~G~~Hp-evA~~y~~LA~vy~~~Gd~~eAi~ 191 (222)
+.-|+-|-..+.....+ -..+++.+++.++...+| .--.|+..||.-+|++|+|++|..
T Consensus 36 ~~~F~yAw~Lv~S~~~~----d~~~GI~lLe~l~~~~~p~~~Rd~lY~LAvg~yklg~Y~~A~~ 95 (126)
T 1nzn_A 36 STQFEYAWCLVRTRYND----DIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLKEYEKALK 95 (126)
T ss_dssp HHHHHHHHHHTTSSSHH----HHHHHHHHHHHHTTTSCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHHcCCCHH----HHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHhhhHHHHHH
Confidence 33444466666555444 345677777888876557 788999999999999999999993
No 197
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A
Probab=89.16 E-value=0.29 Score=45.95 Aligned_cols=71 Identities=18% Similarity=0.076 Sum_probs=40.9
Q ss_pred HHH-HHHHHHHhcCChHHHHHHHHHH-----HHHHHHHhCCCChHHHHHHHHHHHHHHHcCChhhHhhchHHhhhhhCCC
Q 027539 130 TLL-ESSKIALDKGKLEDAVNYGTKA-----LARMIAVCGPYHRTTASTYSLLAVVLYHTGDFNQVRQSSVVFQCQLGDS 203 (222)
Q Consensus 130 ~ll-e~g~~~l~qG~~e~A~~L~~eA-----L~i~eqV~G~~HpevA~~y~~LA~vy~~~Gd~~eAi~~~~~~~~~~~~~ 203 (222)
..| +.|+.++++|+++.|...|.++ +.......| .+ ..+..++.+.-..|++..|. .++-++||+
T Consensus 682 ~~W~~la~~al~~~~~~~A~~~y~~~~d~~~l~~l~~~~~--~~---~~~~~~~~~a~~~~~~~~A~----~~~~~~g~~ 752 (814)
T 3mkq_A 682 MKWRALGDASLQRFNFKLAIEAFTNAHDLESLFLLHSSFN--NK---EGLVTLAKDAETTGKFNLAF----NAYWIAGDI 752 (814)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHTCHHHHHHHHHHTT--CH---HHHHHHHHHHHHTTCHHHHH----HHHHHHTCH
T ss_pred hHHHHHHHHHHHcCCHHHHHHHHHHccChhhhHHHHHHcC--CH---HHHHHHHHHHHHcCchHHHH----HHHHHcCCH
Confidence 344 4589999999999999999885 334444444 22 22334444444455555554 444444444
Q ss_pred CceEEE
Q 027539 204 KSSIII 209 (222)
Q Consensus 204 ~~a~~i 209 (222)
+.|+.+
T Consensus 753 ~~a~~~ 758 (814)
T 3mkq_A 753 QGAKDL 758 (814)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 444443
No 198
>2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis}
Probab=88.94 E-value=0.45 Score=32.33 Aligned_cols=35 Identities=14% Similarity=0.083 Sum_probs=28.7
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHhCCCChHH
Q 027539 130 TLLESSKIALDKGKLEDAVNYGTKALARMIAVCGPYHRTT 169 (222)
Q Consensus 130 ~lle~g~~~l~qG~~e~A~~L~~eAL~i~eqV~G~~Hpev 169 (222)
-.+..|.++..+|++++|.+.|.+++.+ .|.++++
T Consensus 37 ~~~~lg~~~~~~~~~~~A~~~~~~al~~-----~p~~~~~ 71 (99)
T 2kc7_A 37 AYYLMGNAYRKLGDWQKALNNYQSAIEL-----NPDSPAL 71 (99)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHH-----CTTSTHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhc-----CCCcHHH
Confidence 4566799999999999999999999976 4555554
No 199
>1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1
Probab=88.42 E-value=0.49 Score=35.52 Aligned_cols=50 Identities=12% Similarity=0.113 Sum_probs=41.2
Q ss_pred HHHHHHhcCChHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHH----cCChhhHhhchHHhh
Q 027539 134 SSKIALDKGKLEDAVNYGTKALARMIAVCGPYHRTTASTYSLLAVVLYH----TGDFNQVRQSSVVFQ 197 (222)
Q Consensus 134 ~g~~~l~qG~~e~A~~L~~eAL~i~eqV~G~~HpevA~~y~~LA~vy~~----~Gd~~eAi~~~~~~~ 197 (222)
.|..+...+..++|.++|.+|... | .+.++.+||.+|.. .+|+++|+ .++
T Consensus 31 lg~~y~~g~~~~~A~~~~~~Aa~~-----g-----~~~a~~~Lg~~y~~G~g~~~d~~~A~----~~~ 84 (138)
T 1klx_A 31 LSLVSNSQINKQKLFQYLSKACEL-----N-----SGNGCRFLGDFYENGKYVKKDLRKAA----QYY 84 (138)
T ss_dssp HHHHTCTTSCHHHHHHHHHHHHHT-----T-----CHHHHHHHHHHHHHCSSSCCCHHHHH----HHH
T ss_pred HHHHHHcCCCHHHHHHHHHHHHcC-----C-----CHHHHHHHHHHHHcCCCCCccHHHHH----HHH
Confidence 488888877888899999988764 2 35788899999999 89999999 665
No 200
>1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3
Probab=87.44 E-value=0.22 Score=46.53 Aligned_cols=48 Identities=17% Similarity=0.177 Sum_probs=31.7
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHcCChhhHhhchHHhh
Q 027539 130 TLLESSKIALDKGKLEDAVNYGTKALARMIAVCGPYHRTTASTYSLLAVVLYHTGDFNQVRQSSVVFQ 197 (222)
Q Consensus 130 ~lle~g~~~l~qG~~e~A~~L~~eAL~i~eqV~G~~HpevA~~y~~LA~vy~~~Gd~~eAi~~~~~~~ 197 (222)
.....|..+..+|++++|..+|.++ .-|..||.+++++|++++|+ +.+
T Consensus 124 a~~~IGd~~~~~g~yeeA~~~Y~~a----------------~n~~~LA~~L~~Lg~yq~AV----ea~ 171 (449)
T 1b89_A 124 HIQQVGDRCYDEKMYDAAKLLYNNV----------------SNFGRLASTLVHLGEYQAAV----DGA 171 (449)
T ss_dssp -------------CTTTHHHHHHHT----------------TCHHHHHHHHHTTTCHHHHH----HHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHh----------------hhHHHHHHHHHHhccHHHHH----HHH
Confidence 5666799999999999999999977 58899999999999999999 555
No 201
>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A
Probab=86.88 E-value=0.21 Score=35.07 Aligned_cols=25 Identities=12% Similarity=-0.048 Sum_probs=21.5
Q ss_pred ChHHHHHHHHHHHHHHHcCChhhHh
Q 027539 166 HRTTASTYSLLAVVLYHTGDFNQVR 190 (222)
Q Consensus 166 HpevA~~y~~LA~vy~~~Gd~~eAi 190 (222)
.|+-+..+..||.+|+.+|++++|+
T Consensus 3 ~p~~~~~~~~lg~~~~~~g~~~~A~ 27 (100)
T 3ma5_A 3 DPEDPFTRYALAQEHLKHDNASRAL 27 (100)
T ss_dssp --CCHHHHHHHHHHHHHTTCHHHHH
T ss_pred CccCHHHHHHHHHHHHHcCCHHHHH
Confidence 4667788999999999999999999
No 202
>2w2u_A Hypothetical P60 katanin; hydrolase transport complex, nucleotide-binding, ESCRT, AAA-ATPase, cytokinesis, ATP-binding; 2.20A {Sulfolobus acidocaldarius}
Probab=86.83 E-value=1.4 Score=31.66 Aligned_cols=37 Identities=19% Similarity=0.181 Sum_probs=32.1
Q ss_pred hhHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHh
Q 027539 126 ADGRTLLESSKIALDKGKLEDAVNYGTKALARMIAVC 162 (222)
Q Consensus 126 ~~a~~lle~g~~~l~qG~~e~A~~L~~eAL~i~eqV~ 162 (222)
..|-+++..|-..-..|++++|+.+|.+|+..+.+..
T Consensus 17 ~~Ai~lv~~Ave~D~~g~y~eAl~lY~~aie~l~~al 53 (83)
T 2w2u_A 17 EMARKYAINAVKADKEGNAEEAITNYKKAIEVLAQLV 53 (83)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHH
Confidence 4566778888888899999999999999999998864
No 203
>2v6y_A AAA family ATPase, P60 katanin; MIT, VPS4, archaea, AAA-ATPase, ATP-binding, microtubule INT and trafficking domain, nucleotide-binding; HET: SRT; 2.40A {Sulfolobus solfataricus} PDB: 2v6y_B*
Probab=85.89 E-value=1.6 Score=31.09 Aligned_cols=37 Identities=27% Similarity=0.293 Sum_probs=32.5
Q ss_pred hhHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHh
Q 027539 126 ADGRTLLESSKIALDKGKLEDAVNYGTKALARMIAVC 162 (222)
Q Consensus 126 ~~a~~lle~g~~~l~qG~~e~A~~L~~eAL~i~eqV~ 162 (222)
..|-+++..|-..-..|++++|+.+|.+|+..+.+..
T Consensus 9 ~~Ai~lv~~Ave~D~~g~y~eAl~lY~~aie~l~~~l 45 (83)
T 2v6y_A 9 DMARKYAILAVKADKEGKVEDAITYYKKAIEVLSQII 45 (83)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHH
Confidence 3577888888888999999999999999999999864
No 204
>3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A
Probab=85.50 E-value=1.6 Score=39.73 Aligned_cols=71 Identities=14% Similarity=0.031 Sum_probs=54.2
Q ss_pred ccccCchhHHHHHHHHHHHHhcCC---hHHHHHHHHHHHHH----------------HHHHhC-----------------
Q 027539 120 HVGCTSADGRTLLESSKIALDKGK---LEDAVNYGTKALAR----------------MIAVCG----------------- 163 (222)
Q Consensus 120 ~~~p~s~~a~~lle~g~~~l~qG~---~e~A~~L~~eAL~i----------------~eqV~G----------------- 163 (222)
...|.+.+|.+++=.|+.++.++. +.+|.+||.+|+.+ ....+|
T Consensus 188 ~~~p~~~~Aydl~Lra~~~l~~~~~~~~~~A~~l~e~Al~lDP~~a~A~A~la~a~~~~~~~~~~~~~~~~~l~~a~~a~ 267 (372)
T 3ly7_A 188 KILPHRGALLTNFYQAHDYLLHGDDKSLNRASELLGEIVQSSPEFTYARAEKALVDIVRHSQHPLDEKQLAALNTEIDNI 267 (372)
T ss_dssp HHSCSSGGGHHHHHHHHHHHHHCSHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHH
T ss_pred ccCCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhccCCCchhhHHHHHHHHHHH
Confidence 457889999999999999998764 57899999999862 122233
Q ss_pred ---CCChHHHHHHHHHHHHHHHcCChhhHh
Q 027539 164 ---PYHRTTASTYSLLAVVLYHTGDFNQVR 190 (222)
Q Consensus 164 ---~~HpevA~~y~~LA~vy~~~Gd~~eAi 190 (222)
+.-|.-+.+|..+|.++...|++++|+
T Consensus 268 ~a~~~~~~~a~~~~alal~~l~~gd~d~A~ 297 (372)
T 3ly7_A 268 VTLPELNNLSIIYQIKAVSALVKGKTDESY 297 (372)
T ss_dssp HTCGGGTTCHHHHHHHHHHHHHHTCHHHHH
T ss_pred HhcccCCcCHHHHHHHHHHHHhCCCHHHHH
Confidence 233555667777888888889999999
No 205
>2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A
Probab=84.40 E-value=5.2 Score=28.26 Aligned_cols=43 Identities=21% Similarity=0.201 Sum_probs=32.9
Q ss_pred chhHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHH
Q 027539 125 SADGRTLLESSKIALDKGKLEDAVNYGTKALARMIAVCGPYHRTTASTYSLLA 177 (222)
Q Consensus 125 s~~a~~lle~g~~~l~qG~~e~A~~L~~eAL~i~eqV~G~~HpevA~~y~~LA 177 (222)
..+.... .|.++..+|++++|+.++++|+.+ .|.|+.+ .++++
T Consensus 45 ~~~i~~~--L~~~~~~~g~~~~A~~~~~~al~l-----~P~~~~~---~~n~~ 87 (104)
T 2v5f_A 45 KVSVLDY--LSYAVYQQGDLDKALLLTKKLLEL-----DPEHQRA---NGNLK 87 (104)
T ss_dssp HHHHHHH--HHHHHHHTTCHHHHHHHHHHHHHH-----CTTCHHH---HHHHH
T ss_pred HHHHHHH--HHHHHHHccCHHHHHHHHHHHHhc-----CCCCHHH---HhhHH
Confidence 3444444 499999999999999999999874 6888776 44554
No 206
>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A
Probab=84.17 E-value=1.4 Score=46.91 Aligned_cols=49 Identities=16% Similarity=0.169 Sum_probs=43.5
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHcCChhhHhhchHHhh
Q 027539 129 RTLLESSKIALDKGKLEDAVNYGTKALARMIAVCGPYHRTTASTYSLLAVVLYHTGDFNQVRQSSVVFQ 197 (222)
Q Consensus 129 ~~lle~g~~~l~qG~~e~A~~L~~eAL~i~eqV~G~~HpevA~~y~~LA~vy~~~Gd~~eAi~~~~~~~ 197 (222)
.+....|..+.++|++++|..+|..| .-|..||.+|.++|++++|+ +.+
T Consensus 1196 ad~~~iGd~le~eg~YeeA~~~Y~kA----------------~ny~rLA~tLvkLge~q~AI----Eaa 1244 (1630)
T 1xi4_A 1196 AHIQQVGDRCYDEKMYDAAKLLYNNV----------------SNFGRLASTLVHLGEYQAAV----DGA 1244 (1630)
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHhh----------------hHHHHHHHHHHHhCCHHHHH----HHH
Confidence 45566799999999999999999884 58999999999999999999 777
No 207
>2cpt_A SKD1 protein, vacuolar sorting protein 4B; MIT, helix bundle, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.7.14.1
Probab=83.87 E-value=6.3 Score=29.93 Aligned_cols=56 Identities=11% Similarity=0.058 Sum_probs=44.7
Q ss_pred hhHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHh-CC-CChHHHHHHHHHHHHHH
Q 027539 126 ADGRTLLESSKIALDKGKLEDAVNYGTKALARMIAVC-GP-YHRTTASTYSLLAVVLY 181 (222)
Q Consensus 126 ~~a~~lle~g~~~l~qG~~e~A~~L~~eAL~i~eqV~-G~-~HpevA~~y~~LA~vy~ 181 (222)
..|.+++..|.-.-..|++++|+.+|.+|+.++.++. .. ..+..-..+..-..-|.
T Consensus 16 ~kAi~lv~~Ave~D~ag~y~eAl~lY~~Aie~l~~alk~e~~~~~~k~~lr~K~~eYl 73 (117)
T 2cpt_A 16 QKAIDLASKAAQEDKAGNYEEALQLYQHAVQYFLHVVKYEAQGDKAKQSIRAKCTEYL 73 (117)
T ss_dssp HHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHH
Confidence 4667778888778889999999999999999999886 33 56776777777666664
No 208
>2v6x_A Vacuolar protein sorting-associated protein 4; protein transport, vacuole, endosome, transport, ESCRT-III, VPS2, VPS4, SKD1, VPS4B, VPS4A; 1.98A {Saccharomyces cerevisiae}
Probab=83.16 E-value=2.6 Score=29.90 Aligned_cols=56 Identities=9% Similarity=-0.031 Sum_probs=43.2
Q ss_pred hhHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHh-CCCChHHHHHHHHHHHHHH
Q 027539 126 ADGRTLLESSKIALDKGKLEDAVNYGTKALARMIAVC-GPYHRTTASTYSLLAVVLY 181 (222)
Q Consensus 126 ~~a~~lle~g~~~l~qG~~e~A~~L~~eAL~i~eqV~-G~~HpevA~~y~~LA~vy~ 181 (222)
..|..++..|.-.-..|++++|+.+|.+|+..+.++. ..-.|..-..+..-..-|.
T Consensus 11 ~~A~~l~~~Av~~D~~g~y~eAl~~Y~~aie~l~~a~k~e~~~~~k~~l~~k~~eYl 67 (85)
T 2v6x_A 11 TKGIELVQKAIDLDTATQYEEAYTAYYNGLDYLMLALKYEKNPKSKDLIRAKFTEYL 67 (85)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHH
Confidence 4677888888888889999999999999999998875 3445666666665555554
No 209
>2a9u_A Ubiquitin carboxyl-terminal hydrolase 8; coil-COIL, protease, SH3-binding, thiol protease, UBL conjugation pathway, structural genomics; 2.10A {Homo sapiens} SCOP: a.118.23.1
Probab=82.48 E-value=2.8 Score=33.19 Aligned_cols=46 Identities=7% Similarity=-0.143 Sum_probs=40.7
Q ss_pred hhHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHhCCCChHHHHHH
Q 027539 126 ADGRTLLESSKIALDKGKLEDAVNYGTKALARMIAVCGPYHRTTASTY 173 (222)
Q Consensus 126 ~~a~~lle~g~~~l~qG~~e~A~~L~~eAL~i~eqV~G~~HpevA~~y 173 (222)
..|.+++..|..+..+|+.+.|+-+|.+-+++++ .=|-|||.-..-
T Consensus 40 rsa~~L~r~A~~y~~EGd~E~AYilymRy~~L~~--kIpkHpdyk~~~ 85 (144)
T 2a9u_A 40 HSALKIFKTAEECRLDRDEERAYVLYMKYVTVYN--LIKKRPDFKQQQ 85 (144)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH--HHTTSHHHHHTH
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH--HHhcCcchhhhh
Confidence 5678999999999999999999999999999995 448999987644
No 210
>1wfd_A Hypothetical protein 1500032H18; MIT domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Mus musculus} SCOP: a.7.14.1
Probab=82.15 E-value=2.8 Score=30.47 Aligned_cols=55 Identities=7% Similarity=0.056 Sum_probs=42.3
Q ss_pred hhHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHh-CCCChHHHHHHHHHHHHH
Q 027539 126 ADGRTLLESSKIALDKGKLEDAVNYGTKALARMIAVC-GPYHRTTASTYSLLAVVL 180 (222)
Q Consensus 126 ~~a~~lle~g~~~l~qG~~e~A~~L~~eAL~i~eqV~-G~~HpevA~~y~~LA~vy 180 (222)
..|-+++..|...-..|++++|+.+|.+|+..+.++. ..-.|..-..+..-..-|
T Consensus 13 ~~Ai~lv~~Ave~D~~g~y~eAl~~Y~~Aie~l~~alk~e~~~~~k~~l~~K~~eY 68 (93)
T 1wfd_A 13 TAAVAVLKRAVELDAESRYQQALVCYQEGIDMLLQVLKGTKESSKRCVLRTKISGY 68 (93)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTCCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
Confidence 4677888888888999999999999999999999876 445566655555444444
No 211
>3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens}
Probab=80.92 E-value=2 Score=38.56 Aligned_cols=52 Identities=17% Similarity=0.270 Sum_probs=36.1
Q ss_pred HHHHHHHHHH-H--HhcCChHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHcC-----ChhhHh
Q 027539 128 GRTLLESSKI-A--LDKGKLEDAVNYGTKALARMIAVCGPYHRTTASTYSLLAVVLYHTG-----DFNQVR 190 (222)
Q Consensus 128 a~~lle~g~~-~--l~qG~~e~A~~L~~eAL~i~eqV~G~~HpevA~~y~~LA~vy~~~G-----d~~eAi 190 (222)
+.-.+..|.+ + ..+|++++|+++|.+|... | -+.++.+||.+|. .| |+++|+
T Consensus 248 ~~a~~~Lg~~~~~~~~~~d~~~A~~~~~~Aa~~-----g-----~~~A~~~Lg~~y~-~G~g~~~d~~~A~ 307 (452)
T 3e4b_A 248 PASWVSLAQLLYDFPELGDVEQMMKYLDNGRAA-----D-----QPRAELLLGKLYY-EGKWVPADAKAAE 307 (452)
T ss_dssp THHHHHHHHHHHHSGGGCCHHHHHHHHHHHHHT-----T-----CHHHHHHHHHHHH-HCSSSCCCHHHHH
T ss_pred HHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHC-----C-----CHHHHHHHHHHHH-cCCCCCCCHHHHH
Confidence 3334455777 4 4678899999998888742 2 3456778888877 56 888887
No 212
>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A
Probab=80.84 E-value=1.2 Score=47.56 Aligned_cols=46 Identities=22% Similarity=0.350 Sum_probs=34.5
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHcCChhhHh
Q 027539 132 LESSKIALDKGKLEDAVNYGTKALARMIAVCGPYHRTTASTYSLLAVVLYHTGDFNQVR 190 (222)
Q Consensus 132 le~g~~~l~qG~~e~A~~L~~eAL~i~eqV~G~~HpevA~~y~~LA~vy~~~Gd~~eAi 190 (222)
..-|+++.++|++++|++.|.+| +-...|..+|..+.++|++++|+
T Consensus 1109 sqLAKAql~~G~~kEAIdsYiKA-------------dD~say~eVa~~~~~lGkyEEAI 1154 (1630)
T 1xi4_A 1109 SQLAKAQLQKGMVKEAIDSYIKA-------------DDPSSYMEVVQAANTSGNWEELV 1154 (1630)
T ss_pred HHHHHHHHhCCCHHHHHHHHHhc-------------CChHHHHHHHHHHHHcCCHHHHH
Confidence 34577788888888777777665 44566777888888888888888
No 213
>1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1
Probab=80.81 E-value=0.26 Score=39.61 Aligned_cols=38 Identities=13% Similarity=0.094 Sum_probs=29.2
Q ss_pred CChHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHcCChh
Q 027539 142 GKLEDAVNYGTKALARMIAVCGPYHRTTASTYSLLAVVLYHTGDFN 187 (222)
Q Consensus 142 G~~e~A~~L~~eAL~i~eqV~G~~HpevA~~y~~LA~vy~~~Gd~~ 187 (222)
+++++|.+.+.+|+.+ .|+-+..|.+++.++..+|+++
T Consensus 16 ~~feeA~~~~~~Ai~l--------~P~~aea~~n~G~~l~~l~~~~ 53 (158)
T 1zu2_A 16 LLFEQIRQDAENTYKS--------NPLDADNLTRWGGVLLELSQFH 53 (158)
T ss_dssp HHHHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHHHHHS
T ss_pred hHHHHHHHHHHHHHHH--------CCCCHHHHHHHHHHHHHhcccc
Confidence 3466677776666654 6777889999999999998865
No 214
>4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae}
Probab=80.51 E-value=2.6 Score=41.76 Aligned_cols=57 Identities=12% Similarity=0.121 Sum_probs=49.0
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHcCChhhHhhch
Q 027539 129 RTLLESSKIALDKGKLEDAVNYGTKALARMIAVCGPYHRTTASTYSLLAVVLYHTGDFNQVRQSS 193 (222)
Q Consensus 129 ~~lle~g~~~l~qG~~e~A~~L~~eAL~i~eqV~G~~HpevA~~y~~LA~vy~~~Gd~~eAi~~~ 193 (222)
.=+..+++-++++|+++.|+++-.+|... =|+--.|...||.+|-.+|||+.|+--.
T Consensus 338 ~LL~~Qa~FLl~K~~~elAL~~Ak~AV~~--------aPseF~tW~~La~vYi~l~d~e~ALLtL 394 (754)
T 4gns_B 338 DLLNIQTNFLLNRGDYELALGVSNTSTEL--------ALDSFESWYNLARCHIKKEEYEKALFAI 394 (754)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------CSSCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHHHHHhccCcHHHHHHHHHHHHhc--------CchhhHHHHHHHHHHHHhccHHHHHHHH
Confidence 35667788899999999999999999875 3677789999999999999999999433
No 215
>3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B
Probab=80.11 E-value=2.2 Score=37.69 Aligned_cols=66 Identities=9% Similarity=0.002 Sum_probs=49.2
Q ss_pred CchhHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHcCChhhHhhchHHhh
Q 027539 124 TSADGRTLLESSKIALDKGKLEDAVNYGTKALARMIAVCGPYHRTTASTYSLLAVVLYHTGDFNQVRQSSVVFQ 197 (222)
Q Consensus 124 ~s~~a~~lle~g~~~l~qG~~e~A~~L~~eAL~i~eqV~G~~HpevA~~y~~LA~vy~~~Gd~~eAi~~~~~~~ 197 (222)
.+..+. +-.|+++..+|++++|+..+.+.+. .|+ .++...++..++.+|..+|+.+.|......++
T Consensus 98 ~~~~~~--~~la~i~~~~g~~eeAL~~l~~~i~-----~~~-~~~~lea~~l~vqi~L~~~r~d~A~k~l~~~~ 163 (310)
T 3mv2_B 98 NSPYEL--YLLATAQAILGDLDKSLETCVEGID-----NDE-AEGTTELLLLAIEVALLNNNVSTASTIFDNYT 163 (310)
T ss_dssp CCHHHH--HHHHHHHHHHTCHHHHHHHHHHHHT-----SSC-STTHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred CCcHHH--HHHHHHHHHcCCHHHHHHHHHHHhc-----cCC-CcCcHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 344443 4569999999999988877776532 233 36889999999999999999999995444333
No 216
>2xze_A STAM-binding protein; hydrolase-protein transport complex; 1.75A {Homo sapiens}
Probab=79.29 E-value=2.2 Score=33.76 Aligned_cols=46 Identities=24% Similarity=0.307 Sum_probs=39.0
Q ss_pred chhHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHhCCCChHHHH
Q 027539 125 SADGRTLLESSKIALDKGKLEDAVNYGTKALARMIAVCGPYHRTTAS 171 (222)
Q Consensus 125 s~~a~~lle~g~~~l~qG~~e~A~~L~~eAL~i~eqV~G~~HpevA~ 171 (222)
-..|.+++..|..+...|+.+.|+-+|.+...++.... |-|||...
T Consensus 37 lrta~~llr~A~~y~~egd~e~AYily~R~~~L~~e~I-pkHpdy~~ 82 (146)
T 2xze_A 37 FRSGVEIIRMASIYSEEGNIEHAFILYNKYITLFIEKL-PKHRDYKS 82 (146)
T ss_dssp HHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTTG-GGSTTTTT
T ss_pred HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHc-ccCccchh
Confidence 46788999999999999999999999999999997444 44887643
No 217
>2br9_A 14-3-3E, 14-3-3 protein epsilon; cell regulator protein, 14-3-3, phosphoserine, structural GE consortium, SGC, ywhae; HET: SEP; 1.75A {Homo sapiens} PDB: 3ual_A* 2o98_A* 3m50_A* 3m51_A* 3axy_C*
Probab=79.21 E-value=3.4 Score=35.27 Aligned_cols=47 Identities=13% Similarity=0.049 Sum_probs=42.6
Q ss_pred hHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHH-cCChhhHh
Q 027539 144 LEDAVNYGTKALARMIAVCGPYHRTTASTYSLLAVVLYH-TGDFNQVR 190 (222)
Q Consensus 144 ~e~A~~L~~eAL~i~eqV~G~~HpevA~~y~~LA~vy~~-~Gd~~eAi 190 (222)
.+.|.+.|++|+.+-.+-..|.||---.-..|.|..||. +|++++|.
T Consensus 146 ~e~a~~aY~~A~~iA~~~L~pthPirLgLaLN~SVF~yEil~~~~~A~ 193 (234)
T 2br9_A 146 AENSLVAYKAASDIAMTELPPTHPIRLGLALNFSVFYYEILNSPDRAC 193 (234)
T ss_dssp HHHHHHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHHHTSCCHHHHH
T ss_pred HHHHHHHHHHHHHHHHccCCCCCcHHHHHHHHHHHHHHHHcCCHHHHH
Confidence 457889999999999888999999999988999999997 89999999
No 218
>3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens}
Probab=74.69 E-value=2.7 Score=37.67 Aligned_cols=26 Identities=8% Similarity=0.107 Sum_probs=19.9
Q ss_pred HHHHHHHHHhcC---ChHHHHHHHHHHHH
Q 027539 131 LLESSKIALDKG---KLEDAVNYGTKALA 156 (222)
Q Consensus 131 lle~g~~~l~qG---~~e~A~~L~~eAL~ 156 (222)
.+..|.++..+| ++++|++.|.+|..
T Consensus 179 ~~~Lg~~~~~~g~~~~~~~A~~~~~~aa~ 207 (452)
T 3e4b_A 179 YVELATVYQKKQQPEQQAELLKQMEAGVS 207 (452)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCcccHHHHHHHHHHHHH
Confidence 445588999999 88888888877653
No 219
>1o9d_A 14-3-3-like protein C; protein-binding, fusicoccin, 14-3-3 family, activating drug; HET: TPO; 2.3A {Nicotiana tabacum} SCOP: a.118.7.1 PDB: 1o9c_A* 1o9e_A* 1o9f_A* 3e6y_A*
Probab=74.46 E-value=5.3 Score=34.60 Aligned_cols=47 Identities=13% Similarity=0.049 Sum_probs=42.4
Q ss_pred hHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHH-cCChhhHh
Q 027539 144 LEDAVNYGTKALARMIAVCGPYHRTTASTYSLLAVVLYH-TGDFNQVR 190 (222)
Q Consensus 144 ~e~A~~L~~eAL~i~eqV~G~~HpevA~~y~~LA~vy~~-~Gd~~eAi 190 (222)
.+.|.+-|++|..+-.+-..|.||---.-..|.|..||. +|++++|+
T Consensus 151 ~e~a~~aY~~A~~iA~~~L~pthPirLGLaLNfSVFyYEiln~~~~Ac 198 (260)
T 1o9d_A 151 AESTLTAYKAAQDIATTELAPTHPIRLGLALNFSVFYYEILNSPDRAC 198 (260)
T ss_dssp HHHHHHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHHHTSCCHHHHH
T ss_pred HHHHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHHHHccCHHHHH
Confidence 357889999999999888999999999989999999997 79999998
No 220
>3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633}
Probab=74.35 E-value=4.5 Score=28.62 Aligned_cols=35 Identities=9% Similarity=0.047 Sum_probs=27.9
Q ss_pred cccCchhHHHHHHHHHHHHhcCChHHHHHHHHHHHHH
Q 027539 121 VGCTSADGRTLLESSKIALDKGKLEDAVNYGTKALAR 157 (222)
Q Consensus 121 ~~p~s~~a~~lle~g~~~l~qG~~e~A~~L~~eAL~i 157 (222)
.+|.++.|.-++ |..+..+|++++|+..+.+++..
T Consensus 38 ~dp~~~rA~~~l--g~~~~~~g~y~~Ai~~w~~~l~~ 72 (93)
T 3bee_A 38 LEPYNEAALSLI--ANDHFISFRFQEAIDTWVLLLDS 72 (93)
T ss_dssp HCTTCHHHHHHH--HHHHHHTTCHHHHHHHHHHHHTC
T ss_pred HCcCCHHHHHHH--HHHHHHcCCHHHHHHHHHHHHhh
Confidence 456666665555 99999999999999999888753
No 221
>3txn_A 26S proteasome regulatory complex subunit P42B; PCI domain, alpha solenoid, regulatory PART LID, hydrolase, protein binding; 2.50A {Drosophila melanogaster} PDB: 3txm_A
Probab=73.82 E-value=14 Score=33.52 Aligned_cols=65 Identities=18% Similarity=0.033 Sum_probs=56.4
Q ss_pred CchhHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHH--cCChhhHh
Q 027539 124 TSADGRTLLESSKIALDKGKLEDAVNYGTKALARMIAVCGPYHRTTASTYSLLAVVLYH--TGDFNQVR 190 (222)
Q Consensus 124 ~s~~a~~lle~g~~~l~qG~~e~A~~L~~eAL~i~eqV~G~~HpevA~~y~~LA~vy~~--~Gd~~eAi 190 (222)
++-..+-.+...+++...|++..+-.+|.+|.++-..+| .||.+-..+...+.+++- .|+|.+|-
T Consensus 135 ~~~llev~lle~~~~~~~~n~~k~k~~l~~a~~~~~ai~--~~p~i~a~i~~~~Gi~~l~~~rdyk~A~ 201 (394)
T 3txn_A 135 KNLLVEVQLLESKTYHALSNLPKARAALTSARTTANAIY--CPPKVQGALDLQSGILHAADERDFKTAF 201 (394)
T ss_dssp THHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSC--CCHHHHHHHHHHHHHHHHHTTSCHHHHH
T ss_pred chhHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhhccCC--CCHHHHHHHHHHhhHHHHHhccCHHHHH
Confidence 455666677788999999999999999999999998875 899998888888888885 99999998
No 222
>1ya0_A SMG-7 transcript variant 2; alpha-helical repeat, tetratricopetide repeat (TPR), 14-3-3, signaling protein; 2.55A {Homo sapiens} SCOP: a.118.8.1
Probab=72.35 E-value=3.3 Score=38.84 Aligned_cols=63 Identities=21% Similarity=0.238 Sum_probs=52.4
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHcCChhhHhhchHHhhhhhCCCCceEEE
Q 027539 130 TLLESSKIALDKGKLEDAVNYGTKALARMIAVCGPYHRTTASTYSLLAVVLYHTGDFNQVRQSSVVFQCQLGDSKSSIII 209 (222)
Q Consensus 130 ~lle~g~~~l~qG~~e~A~~L~~eAL~i~eqV~G~~HpevA~~y~~LA~vy~~~Gd~~eAi~~~~~~~~~~~~~~~a~~i 209 (222)
-++-.|-...-++..+.|..+|.+|+.+ .|+.+..||.||.++...|+.-+|+ +|+ -||+..
T Consensus 154 ~l~~LGDL~RY~~~~~~A~~~Y~~A~~~--------~P~~G~~~nqLavla~~~~~~l~a~----y~y------~rsl~~ 215 (497)
T 1ya0_A 154 CLVHLGDIARYRNQTSQAESYYRHAAQL--------VPSNGQPYNQLAILASSKGDHLTTI----FYY------CRSIAV 215 (497)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHH--------CTTBSHHHHHHHHHHHHTTCHHHHH----HHH------HHHHSS
T ss_pred HHHHcccHHHHHHHHHHHHHHHHHHHHh--------CCCCCchHHHHHHHHhcccccHHHH----HHH------HHHHhc
Confidence 4555677777778888999999999865 7999999999999999999999999 887 567654
Q ss_pred e
Q 027539 210 T 210 (222)
Q Consensus 210 ~ 210 (222)
.
T Consensus 216 ~ 216 (497)
T 1ya0_A 216 K 216 (497)
T ss_dssp S
T ss_pred C
Confidence 3
No 223
>3ubw_A 14-3-3E, 14-3-3 protein epsilon; adapter protein, signaling protein, signaling protein-protei complex; HET: SEP; 1.90A {Homo sapiens}
Probab=72.04 E-value=6.6 Score=34.08 Aligned_cols=47 Identities=13% Similarity=0.049 Sum_probs=42.6
Q ss_pred hHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHH-cCChhhHh
Q 027539 144 LEDAVNYGTKALARMIAVCGPYHRTTASTYSLLAVVLYH-TGDFNQVR 190 (222)
Q Consensus 144 ~e~A~~L~~eAL~i~eqV~G~~HpevA~~y~~LA~vy~~-~Gd~~eAi 190 (222)
.+.|.+-|++|..+-.+-..|.||---.-..|.|..||. +|++++|.
T Consensus 172 ~e~a~~aY~~A~~iA~~~L~pThPirLGLaLNfSVFyYEIln~p~~Ac 219 (261)
T 3ubw_A 172 AENSLVAYKAASDIAMTELPPTHPIRLGLALNFSVFYYEILNSPDRAC 219 (261)
T ss_dssp HHHHHHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHHHTSCCHHHHH
T ss_pred HHHHHHHHHHHHHHHHhhCCCCCcHHHHHHHHHHHHHHHHcCCHHHHH
Confidence 467889999999999999999999999999999999998 79999998
No 224
>3uzd_A 14-3-3 protein gamma; structural genomics, SGC, structural genomics consortium, MA alpha, phosphoserine, phosphothreonine; HET: SEP; 1.86A {Homo sapiens} PDB: 4e2e_A 2b05_A* 2c63_A* 2c74_A* 4dnk_A 4gnt_A 2bq0_A 2c23_A 2c1n_A* 2c1j_A* 2btp_A*
Probab=71.17 E-value=7.2 Score=33.57 Aligned_cols=47 Identities=15% Similarity=0.033 Sum_probs=42.4
Q ss_pred hHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHH-cCChhhHh
Q 027539 144 LEDAVNYGTKALARMIAVCGPYHRTTASTYSLLAVVLYH-TGDFNQVR 190 (222)
Q Consensus 144 ~e~A~~L~~eAL~i~eqV~G~~HpevA~~y~~LA~vy~~-~Gd~~eAi 190 (222)
.+.|..-|++|..+-.+-..|.||---.-..|.|..||. +|++++|.
T Consensus 147 ~~~a~~aY~~A~~iA~~~L~pthPirLGLaLNfSVFyYEIln~~~~Ac 194 (248)
T 3uzd_A 147 VESSEKAYSEAHEISKEHMQPTHPIRLGLALNYSVFYYEIQNAPEQAC 194 (248)
T ss_dssp HHHHHHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHHHTSCCHHHHH
T ss_pred HHHHHHHHHHHHHHHHhhCCCCCcHHHHHHHHHHHHHHHHcCCHHHHH
Confidence 467889999999999989999999999988999999887 79999998
No 225
>2npm_A 14-3-3 domain containing protein; cell regulator protein 14-3-3, struc genomics, structural genomics consortium, SGC, protein BIND; HET: SEP; 2.52A {Cryptosporidium parvum}
Probab=70.39 E-value=5.4 Score=34.55 Aligned_cols=46 Identities=17% Similarity=0.065 Sum_probs=41.4
Q ss_pred hHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHH-cCChhhHh
Q 027539 144 LEDAVNYGTKALARMIAVCGPYHRTTASTYSLLAVVLYH-TGDFNQVR 190 (222)
Q Consensus 144 ~e~A~~L~~eAL~i~eqV~G~~HpevA~~y~~LA~vy~~-~Gd~~eAi 190 (222)
.+.|.+-|++|..+- .-..|.||---.-..|.|..||. +|+.++|+
T Consensus 172 ~e~a~~aY~~A~~iA-~~L~pthPirLGLaLNfSVFyYEiln~~~~Ac 218 (260)
T 2npm_A 172 AEDALKAYKDATVVA-KDLEPTHPIRLGLALNFSVFHYEILNEPRAAI 218 (260)
T ss_dssp HHHHHHHHHHHHHHH-TTSCTTCHHHHHHHHHHHHHHHHTSCCHHHHH
T ss_pred HHHHHHHHHHHHHHH-HhCCCCCcHHHHHHHHHHHHHHHHcCCHHHHH
Confidence 457889999999998 77899999999999999999997 89999999
No 226
>3iqu_A 14-3-3 protein sigma; signal transuction, nucleus, phosphoprotein, secreted, prote binding, signaling protein; HET: SEP; 1.05A {Homo sapiens} SCOP: a.118.7.1 PDB: 3iqj_A* 3iqv_A* 3mhr_A* 3lw1_A* 3o8i_A* 3p1n_A* 3p1o_A* 3t0l_A* 3t0m_A* 3u9x_A* 3ux0_A* 4dat_A* 4dau_A* 3p1s_A* 3p1r_A* 3smk_A* 3spr_A* 3p1q_A* 3p1p_A* 3sml_A* ...
Probab=70.25 E-value=7.1 Score=33.35 Aligned_cols=47 Identities=11% Similarity=0.007 Sum_probs=42.2
Q ss_pred hHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHH-HcCChhhHh
Q 027539 144 LEDAVNYGTKALARMIAVCGPYHRTTASTYSLLAVVLY-HTGDFNQVR 190 (222)
Q Consensus 144 ~e~A~~L~~eAL~i~eqV~G~~HpevA~~y~~LA~vy~-~~Gd~~eAi 190 (222)
.+.|.+-|++|..+-.+-..|.||---.-..|.|..|| .+|++++|.
T Consensus 149 ~e~a~~aY~~A~~iA~~~L~pthPirLGLaLNfSVFyyEiln~~~~Ac 196 (236)
T 3iqu_A 149 IDSARSAYQEAMDISKKEMPPTNPIRLGLALNFSVFHYEIANSPEEAI 196 (236)
T ss_dssp HHHHHHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHHHTSSCHHHHH
T ss_pred HHHHHHHHHHHHHHHHhhCCCCCcHHHHHHHHHHHHHHHHcCCHHHHH
Confidence 45788999999999999999999999998999999988 569999999
No 227
>3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae}
Probab=70.13 E-value=6.7 Score=32.00 Aligned_cols=53 Identities=17% Similarity=0.191 Sum_probs=45.2
Q ss_pred HHHhcCChHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHcCChhhHhhchHHhhhhhCCCCce
Q 027539 137 IALDKGKLEDAVNYGTKALARMIAVCGPYHRTTASTYSLLAVVLYHTGDFNQVRQSSVVFQCQLGDSKSS 206 (222)
Q Consensus 137 ~~l~qG~~e~A~~L~~eAL~i~eqV~G~~HpevA~~y~~LA~vy~~~Gd~~eAi~~~~~~~~~~~~~~~a 206 (222)
..++-|+++.|+++..+. +.-.++..||...-.+|+++=|+ .++.+.||+.+.
T Consensus 14 LAL~lg~l~~A~e~a~~l-------------~~~~~Wk~Lg~~AL~~gn~~lAe----~cy~~~~D~~~L 66 (177)
T 3mkq_B 14 LALEYGNLDAALDEAKKL-------------NDSITWERLIQEALAQGNASLAE----MIYQTQHSFDKL 66 (177)
T ss_dssp HHHHTTCHHHHHHHHHHH-------------CCHHHHHHHHHHHHHTTCHHHHH----HHHHHTTCHHHH
T ss_pred HHHhcCCHHHHHHHHHHh-------------CCHHHHHHHHHHHHHcCChHHHH----HHHHHhCCHHHH
Confidence 457889999999987653 45779999999999999999999 889899998754
No 228
>3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans}
Probab=68.27 E-value=11 Score=32.76 Aligned_cols=58 Identities=7% Similarity=0.047 Sum_probs=48.3
Q ss_pred chhHHHHHHHHHHHHhcCCh-HHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHcC--ChhhHh
Q 027539 125 SADGRTLLESSKIALDKGKL-EDAVNYGTKALARMIAVCGPYHRTTASTYSLLAVVLYHTG--DFNQVR 190 (222)
Q Consensus 125 s~~a~~lle~g~~~l~qG~~-e~A~~L~~eAL~i~eqV~G~~HpevA~~y~~LA~vy~~~G--d~~eAi 190 (222)
+.+=++++..-+..+++|.+ ++|+.++.++|.+ .|+-.++.+.-+.++..+| ++++|+
T Consensus 29 ~~~y~~~~~~~~a~~~~~e~s~~aL~~t~~~L~~--------nP~~~taWn~R~~~L~~l~~~~~~eeL 89 (306)
T 3dra_A 29 DEDYKQIMGLLLALMKAEEYSERALHITELGINE--------LASHYTIWIYRFNILKNLPNRNLYDEL 89 (306)
T ss_dssp CHHHHHHHHHHHHHHHTTCCSHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHTCTTSCHHHHH
T ss_pred CHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHH--------CcHHHHHHHHHHHHHHHcccccHHHHH
Confidence 44556777777888888876 5788888888864 7888899999999999999 999999
No 229
>2wxu_A Phospholipase C; cytolysis, hydrolase, hemolysis, membrane binding, virulence gangrene determinant, C2 domain; 1.80A {Clostridium perfringens} PDB: 2wy6_A 2wxt_A 1qm6_A 1qmd_A 1ca1_A 1gyg_A 1kho_A
Probab=67.86 E-value=18 Score=32.84 Aligned_cols=89 Identities=18% Similarity=0.232 Sum_probs=60.4
Q ss_pred hhHHHHHHH--HHHHceeeeccccCCCC-----CCCCCcCCccccccccc-----ccccC-chhHHHHHHHHHHHHhcCC
Q 027539 77 RKISILRGL--CHKVGLELVPRDYDMDC-----PNPFTRDDIVSMVPVCK-----HVGCT-SADGRTLLESSKIALDKGK 143 (222)
Q Consensus 77 ~k~~lLR~i--c~K~GIQl~~rdY~f~~-----~~~F~~~DI~ni~PvVK-----~~~p~-s~~a~~lle~g~~~l~qG~ 143 (222)
+.+.+|... -+.-|+-+. ||+|.. .|=+.|++=-|++|=-| +..|. .+.++..++.|..+.++|+
T Consensus 36 ~~~~~L~~y~~~l~~Gs~~p--D~d~k~~~~f~~Hfydp~~~~~~~~~~~w~~~~~~~~tA~~~~~ky~~~A~~~~~~g~ 113 (370)
T 2wxu_A 36 KNLEILKENMHELQLGSTYP--DYDKNAYDLYQDHFWDPDIDNNFSKDNSWYLAYSIPDTGESQIRKFSALARYEWQRGN 113 (370)
T ss_dssp HHHHHHHHTHHHHHHHHHGG--GTCTTCCTTCGGGCCCTTC---------CTTTBCBCCCHHHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHHcCCccc--ccCCccccccccccccCCCCCCcccccccccccCCCCcHHHHHHHHHHHHHHHHHcCC
Confidence 445666666 555677665 444544 35677777777777655 22221 2456889999999999999
Q ss_pred hHHHHHHHHHHHHHHHHHhCCCCh
Q 027539 144 LEDAVNYGTKALARMIAVCGPYHR 167 (222)
Q Consensus 144 ~e~A~~L~~eAL~i~eqV~G~~Hp 167 (222)
+++|.=++-.|+-+++.++=|+|.
T Consensus 114 ~~~A~~~LG~a~Hy~~D~~~P~Ha 137 (370)
T 2wxu_A 114 YKQATFYLGEAMHYFGDIDTPYHP 137 (370)
T ss_dssp HHHHHHHHHHHHHHHHHHTSSTTT
T ss_pred HHHHHHHHHHHHHHhhcCCCCccc
Confidence 999999999999999999999999
No 230
>2ymb_A MITD1, MIT domain-containing protein 1; protein transport, membrane, PLD; 3.40A {Homo sapiens}
Probab=67.62 E-value=1.3 Score=38.50 Aligned_cols=90 Identities=12% Similarity=0.072 Sum_probs=8.5
Q ss_pred ccCchhHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHh-CCCChHHHHHHHHHHHHHHHcCChhhHhhch--HHhhh
Q 027539 122 GCTSADGRTLLESSKIALDKGKLEDAVNYGTKALARMIAVC-GPYHRTTASTYSLLAVVLYHTGDFNQVRQSS--VVFQC 198 (222)
Q Consensus 122 ~p~s~~a~~lle~g~~~l~qG~~e~A~~L~~eAL~i~eqV~-G~~HpevA~~y~~LA~vy~~~Gd~~eAi~~~--~~~~~ 198 (222)
.|....|-+++..|.-.-++|++++|+.+|.+|+.++.++. +.-.|..-..+..-..-|- +.|...- ..=+.
T Consensus 17 dp~~~~Ai~lv~~AVe~D~~g~y~eAl~lY~eaIe~Ll~alk~e~d~~~k~~lr~Ki~eYl-----~RAE~LK~~L~k~k 91 (257)
T 2ymb_A 17 DPQSTAAATVLKRAVELDSESRYPQALVCYQEGIDLLLQVLKGTKDNTKRCNLREKISKYM-----DRAENIKKYLDQEK 91 (257)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred ChhHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHH-----HHHHHHHHHHHhhh
Confidence 46677788899999999999999999999999999998876 3334444444443333332 2222110 12233
Q ss_pred hhCCCCceEEEeeeechh
Q 027539 199 QLGDSKSSIIITSFCTEV 216 (222)
Q Consensus 199 ~~~~~~~a~~i~e~~~~~ 216 (222)
+.|.|-.-+.|.|=.+|+
T Consensus 92 ~~g~~~~~i~I~~n~~G~ 109 (257)
T 2ymb_A 92 EDGKYHKQIKIEENATGF 109 (257)
T ss_dssp -----CCEEEECTTCCSC
T ss_pred hcCceEEEEEECCCCccc
Confidence 456666667777666654
No 231
>3iqc_A FLIS, flagellar protein; chaperone, flagellum; 2.70A {Helicobacter pylori} SCOP: a.24.19.0 PDB: 3k1i_A
Probab=67.57 E-value=22 Score=27.26 Aligned_cols=56 Identities=9% Similarity=0.092 Sum_probs=46.3
Q ss_pred HHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHhCCCChHH-HHHHHHHHHHHHHc
Q 027539 128 GRTLLESSKIALDKGKLEDAVNYGTKALARMIAVCGPYHRTT-ASTYSLLAVVLYHT 183 (222)
Q Consensus 128 a~~lle~g~~~l~qG~~e~A~~L~~eAL~i~eqV~G~~Hpev-A~~y~~LA~vy~~~ 183 (222)
+-..+..|+..+.+|++++..+.+.+|..|....-..+.++. ...-.+|..+|.-+
T Consensus 36 al~~l~~A~~ai~~~d~~~k~~~i~KA~~Ii~~L~~sLd~e~GgeiA~nL~~LY~y~ 92 (131)
T 3iqc_A 36 ILRFSSQAKRCIENEDIEKKIYYINRVTDIFTELLNILDYEKGGEVAVYLTGLYTHQ 92 (131)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTBCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHhcCCccccHHHHHHHHHHHHH
Confidence 456778889999999999999999999999999988888886 35566777777543
No 232
>3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B
Probab=67.09 E-value=9.5 Score=33.54 Aligned_cols=55 Identities=13% Similarity=0.104 Sum_probs=40.7
Q ss_pred HHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHH-----HhCCCChHHHHHHHHHHHHHHHcCChhhHh
Q 027539 128 GRTLLESSKIALDKGKLEDAVNYGTKALARMIA-----VCGPYHRTTASTYSLLAVVLYHTGDFNQVR 190 (222)
Q Consensus 128 a~~lle~g~~~l~qG~~e~A~~L~~eAL~i~eq-----V~G~~HpevA~~y~~LA~vy~~~Gd~~eAi 190 (222)
..-+|+ .++.+|++++|.+.+...+..+=+ ...|.| +.++.|+.++++.+|+ +|.
T Consensus 214 ~~lLln---~~~~~g~~~eAe~~L~~l~~~~p~~~~k~~~~p~~---~~~LaN~i~l~~~lgk--~a~ 273 (310)
T 3mv2_B 214 QLGLLN---LHLQQRNIAEAQGIVELLLSDYYSVEQKENAVLYK---PTFLANQITLALMQGL--DTE 273 (310)
T ss_dssp HHHHHH---HHHHHTCHHHHHHHHHHHHSHHHHTTTCHHHHSSH---HHHHHHHHHHHHHTTC--TTH
T ss_pred HHHHHH---HHHHcCCHHHHHHHHHHHHHhcccccccccCCCCC---HHHHHHHHHHHHHhCh--HHH
Confidence 444554 799999999999999877766522 223555 5567789999999998 666
No 233
>3efz_A 14-3-3 protein; 14-3-3, cell regulation, structural genom structural genomics consortium, SGC; HET: SEP; 2.08A {Cryptosporidium parvum} SCOP: a.118.7.1 PDB: 2ijp_A*
Probab=65.17 E-value=8 Score=33.72 Aligned_cols=47 Identities=19% Similarity=0.181 Sum_probs=42.5
Q ss_pred hHHHHHHHHHHHHHHHHHh--CCCChHHHHHHHHHHHHHH-HcCChhhHh
Q 027539 144 LEDAVNYGTKALARMIAVC--GPYHRTTASTYSLLAVVLY-HTGDFNQVR 190 (222)
Q Consensus 144 ~e~A~~L~~eAL~i~eqV~--G~~HpevA~~y~~LA~vy~-~~Gd~~eAi 190 (222)
.+.|.+-|++|..+-.+-. .|.||---.-..|.|..|| .++++++|.
T Consensus 168 ~e~a~~aYq~A~eiA~~~L~~~pThPiRLGLaLNfSVFyYEIln~p~~Ac 217 (268)
T 3efz_A 168 IKQAVEFYEDALQRERSFLEKYPSDPLYLATILNYTILKYDLLGNPEGAM 217 (268)
T ss_dssp HHHHHHHHHHHHHHHHHHCTTGGGCHHHHHHHHHHHHHHHTTTCCHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhcCCCCCChHHHHHHHHHHHHHHHHcCCHHHHH
Confidence 4678899999999998888 9999999999999999999 589999999
No 234
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A
Probab=63.04 E-value=7.5 Score=36.20 Aligned_cols=37 Identities=11% Similarity=0.038 Sum_probs=31.7
Q ss_pred HHHHHHHHHHHHHcCChhhHhhchHHhhhhhCCCCceEEEe
Q 027539 170 ASTYSLLAVVLYHTGDFNQVRQSSVVFQCQLGDSKSSIIIT 210 (222)
Q Consensus 170 A~~y~~LA~vy~~~Gd~~eAi~~~~~~~~~~~~~~~a~~i~ 210 (222)
-..+..||..+-+.|+++.|+ .++.+.||+.++..++
T Consensus 681 ~~~W~~la~~al~~~~~~~A~----~~y~~~~d~~~l~~l~ 717 (814)
T 3mkq_A 681 EMKWRALGDASLQRFNFKLAI----EAFTNAHDLESLFLLH 717 (814)
T ss_dssp HHHHHHHHHHHHHTTCHHHHH----HHHHHHTCHHHHHHHH
T ss_pred HhHHHHHHHHHHHcCCHHHHH----HHHHHccChhhhHHHH
Confidence 367899999999999999999 8888999998765553
No 235
>2o8p_A 14-3-3 domain containing protein; signaling protein, 14-3-3, cell regulator protein, cryptospo parvum, structural genomics; HET: MSE; 1.82A {Cryptosporidium parvum} SCOP: a.118.7.1
Probab=62.63 E-value=3 Score=35.58 Aligned_cols=54 Identities=19% Similarity=0.102 Sum_probs=46.5
Q ss_pred hcCChHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHH-HcCChhhHhhchHHhh
Q 027539 140 DKGKLEDAVNYGTKALARMIAVCGPYHRTTASTYSLLAVVLY-HTGDFNQVRQSSVVFQ 197 (222)
Q Consensus 140 ~qG~~e~A~~L~~eAL~i~eqV~G~~HpevA~~y~~LA~vy~-~~Gd~~eAi~~~~~~~ 197 (222)
..|..+.|..-|++|..+-.+-..|.||---.-..|.|..|| .++++++|. .+.
T Consensus 137 ~~g~~e~a~~aY~~A~~iA~~~L~pthPirLGLaLNfSVFyYEIln~p~~Ac----~lA 191 (227)
T 2o8p_A 137 GLCSLEDSKKIHQDAFTLLCEHPDKIEQLPLGFIQNLAYILSEKYGEKKQVF----NML 191 (227)
T ss_dssp TSSCHHHHHHHHHHHHHHHHHCGGGGGGSCHHHHHHHHHHHHHTSSCHHHHH----HHH
T ss_pred ccccHHHHHHHHHHHHHHHHhhCCCCChHHHHHHHHHHHHHHHHccCHHHHH----HHH
Confidence 356688999999999999998899999988777778888877 688999999 777
No 236
>2rpa_A Katanin P60 ATPase-containing subunit A1; AAA ATPase, ATP-binding, cell cycle, cell division, cytoplas hydrolase, microtubule; NMR {Mus musculus}
Probab=62.02 E-value=18 Score=25.62 Aligned_cols=52 Identities=10% Similarity=-0.034 Sum_probs=39.3
Q ss_pred CchhHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHhCCC-ChHHHHHHHH
Q 027539 124 TSADGRTLLESSKIALDKGKLEDAVNYGTKALARMIAVCGPY-HRTTASTYSL 175 (222)
Q Consensus 124 ~s~~a~~lle~g~~~l~qG~~e~A~~L~~eAL~i~eqV~G~~-HpevA~~y~~ 175 (222)
.....-+.+..||-+...|+|+.|+.+|+.++.-.++-...+ .|..-.-.+.
T Consensus 8 ~~~~i~e~~k~ARe~Al~GnYdta~~yY~g~~~qI~k~l~~~~d~~~r~kW~~ 60 (78)
T 2rpa_A 8 SLQMIVENVKLAREYALLGNYDSAMVYYQGVLDQMNKYLYSVKDTHLRQKWQQ 60 (78)
T ss_dssp SSHHHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHHTCSCHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHhcCCHHHHHhHHH
Confidence 345566788899999999999999999999999887766544 4444444443
No 237
>1vh6_A Flagellar protein FLIS; structural genomics, unknown function; HET: MSE; 2.50A {Bacillus subtilis} SCOP: a.24.19.1
Probab=61.66 E-value=11 Score=29.60 Aligned_cols=54 Identities=9% Similarity=0.024 Sum_probs=44.1
Q ss_pred HHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHH
Q 027539 128 GRTLLESSKIALDKGKLEDAVNYGTKALARMIAVCGPYHRTTASTYSLLAVVLYH 182 (222)
Q Consensus 128 a~~lle~g~~~l~qG~~e~A~~L~~eAL~i~eqV~G~~HpevA~~y~~LA~vy~~ 182 (222)
+-..+..|+..+.+|+++++-+.+.+|..|....-+.+.++ ...-.+|..+|.-
T Consensus 33 al~~l~~A~~aie~~d~~~k~~~i~KA~~Ii~eL~~sLd~e-geiA~nL~~LY~y 86 (145)
T 1vh6_A 33 CLKFIRLAAQAIENDDMERKNENLIKAQNIIQELNFTLNRN-IELSASMGAMYDY 86 (145)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHH-HHHTTHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHcCCc-hHHHHHHHHHHHH
Confidence 55778889999999999999999999999998777777776 5666667777653
No 238
>3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae}
Probab=61.58 E-value=6.6 Score=32.02 Aligned_cols=67 Identities=18% Similarity=0.103 Sum_probs=44.4
Q ss_pred HHHHHHhcCChHHHHHHHHHH-----HHHHHHHhCCCChHHHHHHHHHHHHHHHcCChhhHhhchHHhhhhhCCCCceEE
Q 027539 134 SSKIALDKGKLEDAVNYGTKA-----LARMIAVCGPYHRTTASTYSLLAVVLYHTGDFNQVRQSSVVFQCQLGDSKSSII 208 (222)
Q Consensus 134 ~g~~~l~qG~~e~A~~L~~eA-----L~i~eqV~G~~HpevA~~y~~LA~vy~~~Gd~~eAi~~~~~~~~~~~~~~~a~~ 208 (222)
-|...+.+|+++.|.+.|.++ +.++-.+.|.. ..+..|+.+-...|++.-|. ..+-.+||++.++.
T Consensus 40 Lg~~AL~~gn~~lAe~cy~~~~D~~~L~~Ly~~tg~~-----e~L~kla~iA~~~g~~n~af----~~~l~lGdv~~~i~ 110 (177)
T 3mkq_B 40 LIQEALAQGNASLAEMIYQTQHSFDKLSFLYLVTGDV-----NKLSKMQNIAQTREDFGSML----LNTFYNNSTKERSS 110 (177)
T ss_dssp HHHHHHHTTCHHHHHHHHHHTTCHHHHHHHHHHHTCH-----HHHHHHHHHHHHTTCHHHHH----HHHHHHTCHHHHHH
T ss_pred HHHHHHHcCChHHHHHHHHHhCCHHHHHHHHHHhCCH-----HHHHHHHHHHHHCccHHHHH----HHHHHcCCHHHHHH
Confidence 388999999999999999865 44555566654 55566776666666666555 33334566655444
Q ss_pred E
Q 027539 209 I 209 (222)
Q Consensus 209 i 209 (222)
+
T Consensus 111 l 111 (177)
T 3mkq_B 111 I 111 (177)
T ss_dssp H
T ss_pred H
Confidence 3
No 239
>2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A*
Probab=59.39 E-value=4.8 Score=35.89 Aligned_cols=87 Identities=14% Similarity=-0.020 Sum_probs=58.6
Q ss_pred HHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHhCCCChH-----------------HHHHHHHHHHHHHHcCChhhHh
Q 027539 128 GRTLLESSKIALDKGKLEDAVNYGTKALARMIAVCGPYHRT-----------------TASTYSLLAVVLYHTGDFNQVR 190 (222)
Q Consensus 128 a~~lle~g~~~l~qG~~e~A~~L~~eAL~i~eqV~G~~Hpe-----------------vA~~y~~LA~vy~~~Gd~~eAi 190 (222)
.+++.+.|+.....|..+.|.+.+.+|+.+|. |+.=++ ...+...++..+...|++++|+
T Consensus 115 f~~l~~~~~~~~~~~~~~~a~~~l~~Al~L~r---G~~L~~~~~~~w~~~~r~~l~~~~~~a~~~~~~~~l~~g~~~~a~ 191 (388)
T 2ff4_A 115 FVAEKTAGVHAAAAGRFEQASRHLSAALREWR---GPVLDDLRDFQFVEPFATALVEDKVLAHTAKAEAEIACGRASAVI 191 (388)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCC---SSTTGGGTTSTTHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHHHHhcC---CCCCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHH
Confidence 35667777878888999999999999999873 332222 2245566788888999999987
Q ss_pred hchH-----------------HhhhhhCCCCceEEEeeeechhc
Q 027539 191 QSSV-----------------VFQCQLGDSKSSIIITSFCTEVL 217 (222)
Q Consensus 191 ~~~~-----------------~~~~~~~~~~~a~~i~e~~~~~~ 217 (222)
.... ......|+...|+..++++...|
T Consensus 192 ~~l~~~~~~~P~~E~~~~~lm~al~~~Gr~~~Al~~y~~~r~~L 235 (388)
T 2ff4_A 192 AELEALTFEHPYREPLWTQLITAYYLSDRQSDALGAYRRVKTTL 235 (388)
T ss_dssp HHHHHHHHHSTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Confidence 2211 11234566666666666666555
No 240
>3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A*
Probab=58.28 E-value=4 Score=36.15 Aligned_cols=59 Identities=8% Similarity=0.060 Sum_probs=44.1
Q ss_pred cCChHHHHHHHHHHHHHHHHHhCCCChH--HHHHHHHHHHHHHHc-----CChhhHhhchHHhhhhhCCCCceEEEee
Q 027539 141 KGKLEDAVNYGTKALARMIAVCGPYHRT--TASTYSLLAVVLYHT-----GDFNQVRQSSVVFQCQLGDSKSSIIITS 211 (222)
Q Consensus 141 qG~~e~A~~L~~eAL~i~eqV~G~~Hpe--vA~~y~~LA~vy~~~-----Gd~~eAi~~~~~~~~~~~~~~~a~~i~e 211 (222)
+|.+. |+.+..+|....+++.- +-|. =+.+|..|+.+|+.. |+.++|. .+. ++|+.|..
T Consensus 170 ~gg~~-Al~~l~~A~a~lerAle-LDP~~~~GsA~~~LG~lY~~vPp~~gGd~ekA~----~~f------erAL~LnP 235 (301)
T 3u64_A 170 PLGSA-LPDTVHAAVMMLERACD-LWPSYQEGAVWNVLTKFYAAAPESFGGGMEKAH----TAF------EHLTRYCS 235 (301)
T ss_dssp CTTSC-CHHHHHHHHHHHHHHHH-HCTTHHHHHHHHHHHHHHHHSCTTTTCCHHHHH----HHH------HHHHHHCC
T ss_pred CCChH-HHHhHHHHHHHHHHHHH-hCCCcccCHHHHHHHHHHHhCCCccCCCHHHHH----HHH------HHHHHhCC
Confidence 34443 77777777777777763 3455 467999999999996 9999999 777 67877764
No 241
>1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3
Probab=57.08 E-value=9.4 Score=35.48 Aligned_cols=58 Identities=19% Similarity=0.235 Sum_probs=42.8
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHHHH--HH---------------HhC---CCChHHHHHHHHHHHHHHHcCChhhHhhc
Q 027539 133 ESSKIALDKGKLEDAVNYGTKALARM--IA---------------VCG---PYHRTTASTYSLLAVVLYHTGDFNQVRQS 192 (222)
Q Consensus 133 e~g~~~l~qG~~e~A~~L~~eAL~i~--eq---------------V~G---~~HpevA~~y~~LA~vy~~~Gd~~eAi~~ 192 (222)
..|.++...|++++|.+.+.+|..+. .+ .+| ..||+-.. .+...|.+.|.+++|+
T Consensus 153 ~LA~~L~~Lg~yq~AVea~~KA~~~~~Wk~v~~aCv~~~ef~lA~~~~l~L~~~ad~l~---~lv~~Yek~G~~eEai-- 227 (449)
T 1b89_A 153 RLASTLVHLGEYQAAVDGARKANSTRTWKEVCFACVDGKEFRLAQMCGLHIVVHADELE---ELINYYQDRGYFEELI-- 227 (449)
T ss_dssp HHHHHHHTTTCHHHHHHHHHHHTCHHHHHHHHHHHHHTTCHHHHHHTTTTTTTCHHHHH---HHHHHHHHTTCHHHHH--
T ss_pred HHHHHHHHhccHHHHHHHHHHcCCchhHHHHHHHHHHcCcHHHHHHHHHHHHhCHhhHH---HHHHHHHHCCCHHHHH--
Confidence 45788889999999999999996541 11 122 26777644 4778899999999998
Q ss_pred hHHhh
Q 027539 193 SVVFQ 197 (222)
Q Consensus 193 ~~~~~ 197 (222)
.+.
T Consensus 228 --~lL 230 (449)
T 1b89_A 228 --TML 230 (449)
T ss_dssp --HHH
T ss_pred --HHH
Confidence 555
No 242
>4gq4_A Menin; tumor suppressor, nucleus, transcription-transcription inhib complex; HET: 0RT EPE PE4; 1.27A {Homo sapiens} PDB: 4gq3_A* 4gpq_A* 4gq6_A*
Probab=56.65 E-value=15 Score=34.38 Aligned_cols=42 Identities=17% Similarity=0.123 Sum_probs=39.4
Q ss_pred HHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHcCChhhHh
Q 027539 146 DAVNYGTKALARMIAVCGPYHRTTASTYSLLAVVLYHTGDFNQVR 190 (222)
Q Consensus 146 ~A~~L~~eAL~i~eqV~G~~HpevA~~y~~LA~vy~~~Gd~~eAi 190 (222)
.+.+||+||+..-...|+..| --.|..||.-+|..+++.+|+
T Consensus 282 ~~~~Lf~~AI~~ar~~Y~~~h---vYPYtYlgG~~~R~~~~~eAl 323 (489)
T 4gq4_A 282 DPLTLYHKGIASAKTYYRDEH---IYPYMYLAGYHCRNRNVREAL 323 (489)
T ss_dssp CHHHHHHHHHHHHHHHSTTCC---SHHHHHHHHHHHHTTCHHHHH
T ss_pred CHHHHHHHHHHHHHHhcccCc---ccceeecchHHHHhhhHHHHH
Confidence 477999999999999999999 678999999999999999999
No 243
>3r8n_T 30S ribosomal protein S20; protein biosynthesis, RNA, tRNA, transfer RNA, 16S ribosomal subunit, RRF; 3.00A {Escherichia coli} PDB: 2ykr_T 3fih_T* 3j18_T* 2wwl_T 3oar_T 3oaq_T 3ofb_T 3ofa_T 3ofp_T 3ofx_T 3ofy_T 3ofo_T 3r8o_T 4a2i_T 4gd1_T 4gd2_T 2qal_T* 1p6g_T 1p87_T 2aw7_T ...
Probab=55.06 E-value=40 Score=24.21 Aligned_cols=44 Identities=18% Similarity=0.171 Sum_probs=34.7
Q ss_pred HHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHh--CCCChHHHH
Q 027539 128 GRTLLESSKIALDKGKLEDAVNYGTKALARMIAVC--GPYHRTTAS 171 (222)
Q Consensus 128 a~~lle~g~~~l~qG~~e~A~~L~~eAL~i~eqV~--G~~HpevA~ 171 (222)
.+++.-.-...+..|+.++|.++|..+....-+.- |.+|+-.|.
T Consensus 26 ~rT~iKk~~~Ai~~gd~~~A~~~l~~a~~~iDkaa~KGviHkN~AA 71 (85)
T 3r8n_T 26 MRTFIKKVYAAIEAGDKAAAQKAFNEMQPIVDRQAAKGLIHKNKAA 71 (85)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHHSTTTTHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHCCCccHHHHH
Confidence 34444455567778999999999999999887654 999998875
No 244
>4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A
Probab=54.73 E-value=18 Score=33.32 Aligned_cols=56 Identities=13% Similarity=0.046 Sum_probs=41.5
Q ss_pred HHHHHhcCChHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHcCChhhHhhchHHhh
Q 027539 135 SKIALDKGKLEDAVNYGTKALARMIAVCGPYHRTTASTYSLLAVVLYHTGDFNQVRQSSVVFQ 197 (222)
Q Consensus 135 g~~~l~qG~~e~A~~L~~eAL~i~eqV~G~~HpevA~~y~~LA~vy~~~Gd~~eAi~~~~~~~ 197 (222)
=..+...|+.++|.+++.+-.. . .+.|+.. +|+.|-..|.+.|+.++|....-+..
T Consensus 147 I~~~~~~g~~~~A~~l~~~M~~-----~-G~~Pd~~-ty~~Li~~~~~~g~~d~A~~ll~~Mr 202 (501)
T 4g26_A 147 LFGFCRKGDADKAYEVDAHMVE-----S-EVVPEEP-ELAALLKVSMDTKNADKVYKTLQRLR 202 (501)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHH-----T-TCCCCHH-HHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHCCCHHHHHHHHHHHHh-----c-CCCCCHH-HHHHHHHHHhhCCCHHHHHHHHHHHH
Confidence 4567788999988888877643 2 3566664 58888899999999999995555444
No 245
>2qsr_A Transcription-repair coupling factor; structural genomics, PSI-2, protein ST initiative; 3.10A {Streptococcus pneumoniae}
Probab=52.86 E-value=7.4 Score=31.38 Aligned_cols=42 Identities=26% Similarity=0.290 Sum_probs=36.1
Q ss_pred hHHHHHHHhcccccccccccccchhhHHHHHHHHHHHceeeec
Q 027539 53 RLQWLRTFLGRRFGWSLKDEFQHLRKISILRGLCHKVGLELVP 95 (222)
Q Consensus 53 ~~~~i~~~v~~rfry~L~~~~~~~~k~~lLR~ic~K~GIQl~~ 95 (222)
-...++.|+..||+ .+|.+-..+=.+.-||-+|.+.||.-..
T Consensus 45 el~~l~~EL~DRFG-~lP~~v~~Ll~v~~lK~~a~~lgI~~I~ 86 (173)
T 2qsr_A 45 NYEELQEELIDRFG-EYPDVVAYLLEIGLVKSYLDKVFVQRVE 86 (173)
T ss_dssp HHHHHHHHHHHHHC-SCCHHHHHHHHHHHHHHHHHHTTEEEEE
T ss_pred HHHHHHHHHHHHCC-CCcHHHHHHHHHHHHHHHHHHCCCcEEE
Confidence 34578899999999 7888888889999999999999997654
No 246
>3txn_A 26S proteasome regulatory complex subunit P42B; PCI domain, alpha solenoid, regulatory PART LID, hydrolase, protein binding; 2.50A {Drosophila melanogaster} PDB: 3txm_A
Probab=52.64 E-value=26 Score=31.74 Aligned_cols=56 Identities=11% Similarity=0.103 Sum_probs=48.3
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHcCChhhHh
Q 027539 133 ESSKIALDKGKLEDAVNYGTKALARMIAVCGPYHRTTASTYSLLAVVLYHTGDFNQVR 190 (222)
Q Consensus 133 e~g~~~l~qG~~e~A~~L~~eAL~i~eqV~G~~HpevA~~y~~LA~vy~~~Gd~~eAi 190 (222)
..|..+++.|++.+|.+++.+.+.-...+= .-.-.-.+|..-+.+|+.+|++..|.
T Consensus 104 kL~~l~~~~~~y~~a~~~i~~l~~~~~~~d--d~~~llev~lle~~~~~~~~n~~k~k 159 (394)
T 3txn_A 104 RLIALYFDTALYTEALALGAQLLRELKKLD--DKNLLVEVQLLESKTYHALSNLPKAR 159 (394)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHTTSS--CTHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHhhhHHHHHHHHHHHHHHHhccc--cchhHHHHHHHHHHHHHHhccHHHHH
Confidence 458899999999999999999888776642 34678889999999999999999988
No 247
>2wm9_A Dedicator of cytokinesis protein 9; polymorphism, cell membrane, phosphoprotein, nucleotide-binding, alternative splicing; 2.20A {Homo sapiens} PDB: 2wmn_A* 2wmo_A*
Probab=51.56 E-value=33 Score=31.25 Aligned_cols=53 Identities=17% Similarity=0.025 Sum_probs=39.6
Q ss_pred HHHHHHHHHHHhcC-ChHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHc
Q 027539 129 RTLLESSKIALDKG-KLEDAVNYGTKALARMIAVCGPYHRTTASTYSLLAVVLYHT 183 (222)
Q Consensus 129 ~~lle~g~~~l~qG-~~e~A~~L~~eAL~i~eqV~G~~HpevA~~y~~LA~vy~~~ 183 (222)
.++++.+--++.+| .++.|.+++++.+.+||+. ..=...+.+|..+|.+|...
T Consensus 88 ~~ll~~ai~~f~kg~~~E~ai~~~k~L~~~ye~~--~dy~~Ls~~~~~~a~~y~~I 141 (428)
T 2wm9_A 88 MELLEQCADGLWKAERYELIADIYKLIIPIYEKR--RDFERLAHLYDTLHRAYSKV 141 (428)
T ss_dssp HHHHHHHHHHHHHTTCGGGHHHHHTTTHHHHHHT--TCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHh--cCHHHHHHHHHHHHHHHHHH
Confidence 34667676666776 6899999999999999986 34456677777777776654
No 248
>3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A*
Probab=50.90 E-value=27 Score=31.00 Aligned_cols=75 Identities=13% Similarity=0.117 Sum_probs=52.2
Q ss_pred CCCCcCCcccccccccccccCchhHHHHHHHHHHHHhcCCh-HHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHH
Q 027539 104 NPFTRDDIVSMVPVCKHVGCTSADGRTLLESSKIALDKGKL-EDAVNYGTKALARMIAVCGPYHRTTASTYSLLAVVLYH 182 (222)
Q Consensus 104 ~~F~~~DI~ni~PvVK~~~p~s~~a~~lle~g~~~l~qG~~-e~A~~L~~eAL~i~eqV~G~~HpevA~~y~~LA~vy~~ 182 (222)
+|...+|= .-|||+- ..+.+=++++.--+..+.+|.+ ++|++++.++|.+ +|+-.++.+.-+.++..
T Consensus 33 ~p~~~~~~--~~~~~~i--~y~~~y~~~~~~~r~~~~~~e~se~AL~lt~~~L~~--------nP~~ytaWn~R~~iL~~ 100 (349)
T 3q7a_A 33 KPIMQDDG--PNPVVPI--MYSEEYKDAMDYFRAIAAKEEKSERALELTEIIVRM--------NPAHYTVWQYRFSLLTS 100 (349)
T ss_dssp CCCCCCCC--SSCSSCB--CCCHHHHHHHHHHHHHHHTTCCSHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHH
T ss_pred cccCCCCC--CCCeeee--eeCHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHh--------CchhHHHHHHHHHHHHH
Confidence 35544442 2355543 2456666777777777777755 5788888888854 67777888888899999
Q ss_pred cC-ChhhHh
Q 027539 183 TG-DFNQVR 190 (222)
Q Consensus 183 ~G-d~~eAi 190 (222)
+| ++++|+
T Consensus 101 l~~~l~eEL 109 (349)
T 3q7a_A 101 LNKSLEDEL 109 (349)
T ss_dssp TTCCHHHHH
T ss_pred hhhhHHHHH
Confidence 98 588888
No 249
>4b4t_P 26S proteasome regulatory subunit RPN5; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=50.89 E-value=57 Score=29.50 Aligned_cols=60 Identities=15% Similarity=0.162 Sum_probs=49.5
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHHHHHHHHhCCCCh-HHHHHHHHHHHHHHHcCChhhHhhchH
Q 027539 132 LESSKIALDKGKLEDAVNYGTKALARMIAVCGPYHR-TTASTYSLLAVVLYHTGDFNQVRQSSV 194 (222)
Q Consensus 132 le~g~~~l~qG~~e~A~~L~~eAL~i~eqV~G~~Hp-evA~~y~~LA~vy~~~Gd~~eAi~~~~ 194 (222)
...|+.+..+|++.+|.+++.+.. ..++|.+.. +-...+....++|...||+.+|.+++.
T Consensus 141 ~~La~i~e~~g~~~eA~~iL~~l~---~Et~~~~~~~~kve~~l~q~rl~l~~~d~~~a~~~~~ 201 (445)
T 4b4t_P 141 KDLVEIKKEEGKIDEAADILCELQ---VETYGSMEMSEKIQFILEQMELSILKGDYSQATVLSR 201 (445)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHH---HHHCSSSCHHHHHHHHHHHHHHHHHHTCHHHHHHHHH
T ss_pred HHHHHHHHHccCHHHHHHHHHHHH---HHHHhcccHHHHHHHHHHHHHHHHHCCCHHHHHHHHH
Confidence 344899999999999999998764 667887664 457789999999999999999996554
No 250
>2dl1_A Spartin; SPG20, MIT, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=50.53 E-value=26 Score=26.80 Aligned_cols=65 Identities=11% Similarity=0.031 Sum_probs=46.8
Q ss_pred hhHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHhCCCC------h--------HHHHHHHHHHHHHHHcCChhhHh
Q 027539 126 ADGRTLLESSKIALDKGKLEDAVNYGTKALARMIAVCGPYH------R--------TTASTYSLLAVVLYHTGDFNQVR 190 (222)
Q Consensus 126 ~~a~~lle~g~~~l~qG~~e~A~~L~~eAL~i~eqV~G~~H------p--------evA~~y~~LA~vy~~~Gd~~eAi 190 (222)
-.|.++++.|-..-..|+.++|+++|.+.+.-+++-.+.-- . .-.+.-.+|.+|-..++..+.-.
T Consensus 20 ~~AF~~Is~AL~~DE~g~k~~Al~lYk~GI~eLe~Gl~I~~~~~~~~g~~we~Ar~lq~KM~~nL~~v~~RL~~Le~~~ 98 (116)
T 2dl1_A 20 KKAFLFVNKGLNTDELGQKEEAKNYYKQGIGHLLRGISISSKESEHTGPGWESARQMQQKMKETLQNVRTRLEILEKGL 98 (116)
T ss_dssp HHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHSSCCCCTTCCCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhhhhcCCHHHHHHHHHHHHHHHHHhccccccCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 45777888888877889999999999999999987654322 2 24455667777777766554443
No 251
>1om2_A Protein (mitochondrial import receptor subunit TOM20); mitochondrial protein import across outer membrane, receptor for presequences; NMR {Rattus norvegicus} SCOP: a.23.4.1
Probab=50.41 E-value=16 Score=26.90 Aligned_cols=30 Identities=23% Similarity=0.212 Sum_probs=24.6
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHHHHH
Q 027539 129 RTLLESSKIALDKGKLEDAVNYGTKALARM 158 (222)
Q Consensus 129 ~~lle~g~~~l~qG~~e~A~~L~~eAL~i~ 158 (222)
-+-+..|..++.+|.++.|..-|..|+.++
T Consensus 21 l~eV~lGE~L~~~g~~e~av~Hf~nAl~Vc 50 (95)
T 1om2_A 21 LEEIQLGEELLAQGDYEKGVDHLTNAIAVC 50 (95)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHHc
Confidence 345678999999999999999777887754
No 252
>3ax2_A Mitochondrial import receptor subunit TOM20 homol; protein-protein complex, membrane protein-transport protein; 1.90A {Rattus norvegicus} PDB: 2v1s_A 3awr_A 2v1t_A 3ax5_A 3ax3_A
Probab=48.96 E-value=6.9 Score=27.54 Aligned_cols=29 Identities=24% Similarity=0.244 Sum_probs=24.2
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHHHH
Q 027539 130 TLLESSKIALDKGKLEDAVNYGTKALARM 158 (222)
Q Consensus 130 ~lle~g~~~l~qG~~e~A~~L~~eAL~i~ 158 (222)
+-.+.|..++.+|.+++|..-|.+|+.++
T Consensus 19 ~eV~~GE~L~~~g~~~~~~~hf~nAl~Vc 47 (73)
T 3ax2_A 19 EEIQLGEELLAQGDYEKGVDHLTNAIAVC 47 (73)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHHc
Confidence 44678999999999999999888888743
No 253
>1orj_A Flagellar protein FLIS; flagellin, flagellar export, chaperone, flagellum, four HELI; 2.25A {Aquifex aeolicus} SCOP: a.24.19.1 PDB: 1ory_A
Probab=46.74 E-value=38 Score=25.95 Aligned_cols=55 Identities=13% Similarity=-0.005 Sum_probs=42.6
Q ss_pred HHHHHHHHHHHHhcCCh-HHH---HHHHHHHHHHHHHHhCCCChHH-HHHHHHHHHHHHH
Q 027539 128 GRTLLESSKIALDKGKL-EDA---VNYGTKALARMIAVCGPYHRTT-ASTYSLLAVVLYH 182 (222)
Q Consensus 128 a~~lle~g~~~l~qG~~-e~A---~~L~~eAL~i~eqV~G~~Hpev-A~~y~~LA~vy~~ 182 (222)
+-+.++.|+..+.+|++ ++. -+.+.+|..|....-+.+.+|. ...-.+|..+|.-
T Consensus 29 ai~~l~~A~~ai~~~d~~~~k~~~~~~i~KA~~Ii~eL~~sLd~e~GgeiA~nL~~LY~y 88 (130)
T 1orj_A 29 AIECLERAIEIYDQVNELEKRKEFVENIDRVYDIISALKSFLDHEKGKEIAKNLDTIYTI 88 (130)
T ss_dssp HHHHHHHHHHTGGGTTSHHHHHHHHHHHHHHHHHHHHHHHTCCTTTSHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHHhcCCccCcHHHHHHHHHHHH
Confidence 45677888999999999 998 9999999999988887777664 2444566666653
No 254
>4b4t_O 26S proteasome regulatory subunit RPN9; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=44.25 E-value=86 Score=27.84 Aligned_cols=61 Identities=18% Similarity=0.014 Sum_probs=45.9
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHhCCCChHH-HHHHHHHHHHHHHcCChhhHh
Q 027539 129 RTLLESSKIALDKGKLEDAVNYGTKALARMIAVCGPYHRTT-ASTYSLLAVVLYHTGDFNQVR 190 (222)
Q Consensus 129 ~~lle~g~~~l~qG~~e~A~~L~~eAL~i~eqV~G~~Hpev-A~~y~~LA~vy~~~Gd~~eAi 190 (222)
.--...++.++..|+.++|.+++.++-.+.+..- ..+|.+ +..|...+..|-..|+++++-
T Consensus 128 ~i~~~i~~~yl~~~d~~~a~~~l~~~~~~l~~~~-~~~~~v~~~~y~~~~~~~~~~~~~a~~y 189 (393)
T 4b4t_O 128 LIDSEIARTYLLKNDLVKARDLLDDLEKTLDKKD-SIPLRITNSFYSTNSQYFKFKNDFNSFY 189 (393)
T ss_dssp HHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHSC-CSSSHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHhhhccC-CccHHHHHHHHHHHHHHHHHhhhHHHHH
Confidence 3445568999999999999999999999988864 456655 555555666666778887765
No 255
>4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A
Probab=43.39 E-value=34 Score=31.36 Aligned_cols=55 Identities=16% Similarity=0.212 Sum_probs=41.8
Q ss_pred HHHHHhcCChHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHcCChhhHhhchHHh
Q 027539 135 SKIALDKGKLEDAVNYGTKALARMIAVCGPYHRTTASTYSLLAVVLYHTGDFNQVRQSSVVF 196 (222)
Q Consensus 135 g~~~l~qG~~e~A~~L~~eAL~i~eqV~G~~HpevA~~y~~LA~vy~~~Gd~~eAi~~~~~~ 196 (222)
-..+...|+.++|.+++.+... .| +-|++ .+|+.|=..|.+.|+.++|...-.+.
T Consensus 112 I~~~~~~g~~~~A~~l~~~M~~-----~g-~~Pd~-~tyn~lI~~~~~~g~~~~A~~l~~~M 166 (501)
T 4g26_A 112 ARLAVAKDDPEMAFDMVKQMKA-----FG-IQPRL-RSYGPALFGFCRKGDADKAYEVDAHM 166 (501)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHH-----TT-CCCCH-HHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHhcCCHHHHHHHHHHHHH-----cC-CCCcc-ceehHHHHHHHHCCCHHHHHHHHHHH
Confidence 5678889999999999987643 23 45665 46888889999999999999443333
No 256
>3eab_A Spastin; spastin, MIT, ESCRT, alternative splicing, ATP- binding, cytoplasm, disease mutation, hereditary spastic paraplegia, nucleotide-binding; 2.50A {Homo sapiens}
Probab=43.35 E-value=28 Score=25.35 Aligned_cols=37 Identities=14% Similarity=0.132 Sum_probs=28.5
Q ss_pred hHHHHHHHHHHHHhc---CChHHHHHHHHHHHHHHHHHhC
Q 027539 127 DGRTLLESSKIALDK---GKLEDAVNYGTKALARMIAVCG 163 (222)
Q Consensus 127 ~a~~lle~g~~~l~q---G~~e~A~~L~~eAL~i~eqV~G 163 (222)
.|.+.++.|-..-.. |+.++|+++|.+.+.-+++=.+
T Consensus 15 ~AF~~Is~aL~~DE~~~~G~k~~A~~~YkkGi~eL~~Gi~ 54 (89)
T 3eab_A 15 QAFEYISIALRIDEDEKAGQKEQAVEWYKKGIEELEKGIA 54 (89)
T ss_dssp HHHHHHHHHHHHHHHSCSSSGGGSHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhcccCCCHHHHHHHHHHHHHHHHhhcC
Confidence 455666677666666 8999999999999998886554
No 257
>2vkj_A TM1634; membrane protein, TPR motif joint center for structural GENO JCSG, structural genomics; 1.65A {Thermotoga maritima} PDB: 2vko_A*
Probab=41.53 E-value=44 Score=24.70 Aligned_cols=42 Identities=17% Similarity=0.184 Sum_probs=33.1
Q ss_pred hhHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHhCCCChHHHHHH
Q 027539 126 ADGRTLLESSKIALDKGKLEDAVNYGTKALARMIAVCGPYHRTTASTY 173 (222)
Q Consensus 126 ~~a~~lle~g~~~l~qG~~e~A~~L~~eAL~i~eqV~G~~HpevA~~y 173 (222)
.+|+-++..|+.....|++.+|.-++.++.++- .+|++-..+
T Consensus 51 ~~~r~~i~eak~~y~~~ny~ea~~l~~k~~n~t------en~~i~ki~ 92 (106)
T 2vkj_A 51 KKARSLIAEGKDLFETANYGEALVFFEKALNLS------DNEEIKKIA 92 (106)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC------CCHHHHHHH
T ss_pred hHHHHHHHHHHHHHHhcchhHHHHHHHHHHccc------cCHHHHHHH
Confidence 678889999999999999999999888888663 345554443
No 258
>2vqe_T 30S ribosomal protein S20; tRNA-binding, rRNA-binding, metal-binding, zinc-finger, translation; HET: TM2 PAR; 2.5A {Thermus thermophilus} SCOP: a.7.6.1 PDB: 1gix_W* 1hnw_T* 1hnx_T* 1hnz_T* 1hr0_T 1j5e_T 1jgo_W* 1jgp_W* 1jgq_W* 1ml5_W* 1yl4_W 2b64_T* 2b9m_T* 2b9o_T* 2f4v_T* 2ow8_u* 2qnh_u* 2uxb_T* 1fjg_T* 2uxd_T* ...
Probab=41.44 E-value=77 Score=23.67 Aligned_cols=44 Identities=23% Similarity=0.237 Sum_probs=35.3
Q ss_pred HHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHh--CCCChHHHH
Q 027539 128 GRTLLESSKIALDKGKLEDAVNYGTKALARMIAVC--GPYHRTTAS 171 (222)
Q Consensus 128 a~~lle~g~~~l~qG~~e~A~~L~~eAL~i~eqV~--G~~HpevA~ 171 (222)
.+++.-.-...+..|+.++|.++|.++...+-+.- |.+|.-.|.
T Consensus 33 ~rT~iKkv~~Ai~~gdk~~A~~~l~~a~s~iDkaa~KGviHKN~AA 78 (106)
T 2vqe_T 33 IKTLSKKAVQLAQEGKAEEALKIMRKAESLIDKAAKGSTLHKNAAA 78 (106)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTTTTSSCTTHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHcCCccHhHHH
Confidence 34444445566789999999999999999988764 999999876
No 259
>4b4t_R RPN7, 26S proteasome regulatory subunit RPN7; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=41.07 E-value=37 Score=30.44 Aligned_cols=58 Identities=12% Similarity=0.048 Sum_probs=47.4
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHcCChhhHhhc
Q 027539 130 TLLESSKIALDKGKLEDAVNYGTKALARMIAVCGPYHRTTASTYSLLAVVLYHTGDFNQVRQS 192 (222)
Q Consensus 130 ~lle~g~~~l~qG~~e~A~~L~~eAL~i~eqV~G~~HpevA~~y~~LA~vy~~~Gd~~eAi~~ 192 (222)
.....|+.+...|+++.|.+.|.++. +...|.-| ...++..+.+++...||+..|..+
T Consensus 133 ~~~~la~~~~~~Gd~~~A~~~~~~~~---~~~~~~~~--kid~~l~~irl~l~~~d~~~~~~~ 190 (429)
T 4b4t_R 133 AWINLGEYYAQIGDKDNAEKTLGKSL---SKAISTGA--KIDVMLTIARLGFFYNDQLYVKEK 190 (429)
T ss_dssp CCHHHHHHHHHHCCCTTHHHHHHHHH---HHHTCCCS--HHHHHHHHHHHHHHHTCHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHH---HhcCChHH--HHHHHHHHHHHHHHhccHHHHHHH
Confidence 34567999999999999999999854 55566654 578888999999999999999833
No 260
>3t5x_A PCI domain-containing protein 2; PCI, mRNA nuclear export, transcription; 2.12A {Homo sapiens}
Probab=41.01 E-value=26 Score=28.52 Aligned_cols=69 Identities=14% Similarity=0.042 Sum_probs=44.6
Q ss_pred cccccCchhHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHcCChhhHh
Q 027539 119 KHVGCTSADGRTLLESSKIALDKGKLEDAVNYGTKALARMIAVCGPYHRTTASTYSLLAVVLYHTGDFNQVR 190 (222)
Q Consensus 119 K~~~p~s~~a~~lle~g~~~l~qG~~e~A~~L~~eAL~i~eqV~G~~HpevA~~y~~LA~vy~~~Gd~~eAi 190 (222)
|+.-|.+-.++-.+-.|+.++.++++.+|.+.+.+|+...-+- |.-+...+ +..|=-+--.+|+.+...
T Consensus 5 ~~~~~~~q~v~Y~YYlGr~~~~~~~y~~A~~~L~~A~~~~~~~-~~~~k~~I--L~yLIp~~Ll~G~iP~~~ 73 (203)
T 3t5x_A 5 KDDYSTAQRVTYKYYVGRKAMFDSDFKQAEEYLSFAFEHCHRS-SQKNKRMI--LIYLLPVKMLLGHMPTVE 73 (203)
T ss_dssp ----CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSCTT-CHHHHHHH--HHHHHHHHHHTTCEECHH
T ss_pred cccCCHHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHCCHh-HHHHHHHH--HHHHHHHHHHcCCCCCHH
Confidence 5556777788888899999999999999999999998864321 22233333 333333333467766554
No 261
>3i5p_A Nucleoporin NUP170; helical stack, membrane, mRNA transport, nuclear pore complex, nucleus, phosphoprotein, protein transport; 3.20A {Saccharomyces cerevisiae}
Probab=40.10 E-value=26 Score=33.09 Aligned_cols=78 Identities=8% Similarity=-0.029 Sum_probs=38.9
Q ss_pred CCCCcCCcccccccccccccCchhHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHc
Q 027539 104 NPFTRDDIVSMVPVCKHVGCTSADGRTLLESSKIALDKGKLEDAVNYGTKALARMIAVCGPYHRTTASTYSLLAVVLYHT 183 (222)
Q Consensus 104 ~~F~~~DI~ni~PvVK~~~p~s~~a~~lle~g~~~l~qG~~e~A~~L~~eAL~i~eqV~G~~HpevA~~y~~LA~vy~~~ 183 (222)
+-|++||++ ..-|.|.+..|+..-.. ..++...++++|+.+|+++.+.+.-+ .+...-..|..+
T Consensus 17 sf~s~dDv~------------~~KA~E~L~~Ak~~~~~-d~~~~~~~L~eAl~Lf~~va~~l~l~---~L~~~c~~~~~l 80 (525)
T 3i5p_A 17 SFCSASDIL------------GFRAIEHLRRAKEIGLR-NYDSLNYHLKNATALLEQIVDDLSIE---KLKEAVSMMLSV 80 (525)
T ss_dssp ------CHH------------HHHHHHHHHHHHHC-----CHHHHHHHHHHHC----------CH---HHHHHHHHHHHT
T ss_pred CcCCHHHHH------------HHHHHHHHHHHHhccCC-CHHHHHHHHHHHHHHHHHHhccCCHH---HHHHHHHHHHHc
Confidence 347888873 34578888777743211 45688899999999999999988643 222335566677
Q ss_pred CChhhHhhchHHhh
Q 027539 184 GDFNQVRQSSVVFQ 197 (222)
Q Consensus 184 Gd~~eAi~~~~~~~ 197 (222)
+-|+.|+.+.-...
T Consensus 81 ~~y~GaVeL~L~~A 94 (525)
T 3i5p_A 81 NYYPKSIEFLLNIA 94 (525)
T ss_dssp SCHHHHHHHHHHHH
T ss_pred CChHHHHHHHHHHH
Confidence 78888885444444
No 262
>2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A*
Probab=39.70 E-value=81 Score=27.77 Aligned_cols=49 Identities=8% Similarity=0.097 Sum_probs=38.7
Q ss_pred HHHHHHhcCChHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHcCChhhHh
Q 027539 134 SSKIALDKGKLEDAVNYGTKALARMIAVCGPYHRTTASTYSLLAVVLYHTGDFNQVR 190 (222)
Q Consensus 134 ~g~~~l~qG~~e~A~~L~~eAL~i~eqV~G~~HpevA~~y~~LA~vy~~~Gd~~eAi 190 (222)
.+...+..|++++|+..+.+++.. ||.=-..+..|-..|+..|+..+|+
T Consensus 177 ~~~~~l~~g~~~~a~~~l~~~~~~--------~P~~E~~~~~lm~al~~~Gr~~~Al 225 (388)
T 2ff4_A 177 KAEAEIACGRASAVIAELEALTFE--------HPYREPLWTQLITAYYLSDRQSDAL 225 (388)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHH--------STTCHHHHHHHHHHHHTTTCHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHh--------CCCCHHHHHHHHHHHHHcCCHHHHH
Confidence 456678899999998888777654 4444447788889999999999999
No 263
>4b4t_P 26S proteasome regulatory subunit RPN5; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=39.70 E-value=99 Score=27.85 Aligned_cols=65 Identities=22% Similarity=0.308 Sum_probs=52.6
Q ss_pred CchhHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHhCCCChHH-HHHHHHHHHHHHHcCChhhHh
Q 027539 124 TSADGRTLLESSKIALDKGKLEDAVNYGTKALARMIAVCGPYHRTT-ASTYSLLAVVLYHTGDFNQVR 190 (222)
Q Consensus 124 ~s~~a~~lle~g~~~l~qG~~e~A~~L~~eAL~i~eqV~G~~Hpev-A~~y~~LA~vy~~~Gd~~eAi 190 (222)
+.-..+-.++..+.++..|++..|..+++++....... +.||+. +..|...+.++.+.++|.+|-
T Consensus 173 ~~~kve~~l~q~rl~l~~~d~~~a~~~~~ki~~~~~~~--~~~~~lk~~~~~~~~~~~~~e~~y~~a~ 238 (445)
T 4b4t_P 173 MSEKIQFILEQMELSILKGDYSQATVLSRKILKKTFKN--PKYESLKLEYYNLLVKISLHKREYLEVA 238 (445)
T ss_dssp HHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHS--SCCHHHHHHHHHHHHHHHHHHCCHHHHH
T ss_pred HHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhccc--CCcHHHHHHHHHHHHHHHHHhhhHHHHH
Confidence 34556778899999999999999999999986654443 456664 677888999999999999988
No 264
>1olp_A Alpha-toxin; zinc phospholipase C, GAS gangrene determinant, membrane binding, calcium binding, hydrolase; 2.5A {Clostridium absonum} SCOP: a.124.1.1 b.12.1.3
Probab=39.34 E-value=30 Score=31.44 Aligned_cols=77 Identities=23% Similarity=0.287 Sum_probs=59.1
Q ss_pred HceeeeccccCCCC-----CCCCCcCCccccccccc-----ccccC-chhHHHHHHHHHHHHhcCChHHHHHHHHHHHHH
Q 027539 89 VGLELVPRDYDMDC-----PNPFTRDDIVSMVPVCK-----HVGCT-SADGRTLLESSKIALDKGKLEDAVNYGTKALAR 157 (222)
Q Consensus 89 ~GIQl~~rdY~f~~-----~~~F~~~DI~ni~PvVK-----~~~p~-s~~a~~lle~g~~~l~qG~~e~A~~L~~eAL~i 157 (222)
-|+-+. ||+|.. .|=+.|++=-|++|=-| +..|. .+.++..++.|..+..+|++++|.=++-.|+-+
T Consensus 50 ~Gs~~p--D~d~k~~~~f~~Hfydp~~~~~~~~~~~w~~~~~~~~tA~~~~~ky~~~A~~~~~~g~~~~A~~~LG~a~Hy 127 (370)
T 1olp_A 50 LGSTFP--DYDPNAYSLYQDHFWDPDTDHNFTQDNKWYLSYAVPDNAESQTRKFATLAKNEWDKGNYEKAAWYLGQGMHY 127 (370)
T ss_dssp HHHHGG--GGCTTCCTTCGGGCCBTTTTBCHHHHSGGGGGGCCSCCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred cCCccc--ccCCccccccccccccCCCCCCcccccccccccCCCCcHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 465554 455544 35677787777777655 22221 245688999999999999999999999999999
Q ss_pred HHHHhCCCCh
Q 027539 158 MIAVCGPYHR 167 (222)
Q Consensus 158 ~eqV~G~~Hp 167 (222)
++.++=|+|.
T Consensus 128 ~~D~~~P~Ha 137 (370)
T 1olp_A 128 FGDLNTPYHA 137 (370)
T ss_dssp HHHHTSHHHH
T ss_pred hhcCCCCccc
Confidence 9999999998
No 265
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=36.09 E-value=15 Score=34.41 Aligned_cols=49 Identities=6% Similarity=0.083 Sum_probs=34.0
Q ss_pred HHHHHHhcCC----------hHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHcC--ChhhHh
Q 027539 134 SSKIALDKGK----------LEDAVNYGTKALARMIAVCGPYHRTTASTYSLLAVVLYHTG--DFNQVR 190 (222)
Q Consensus 134 ~g~~~l~qG~----------~e~A~~L~~eAL~i~eqV~G~~HpevA~~y~~LA~vy~~~G--d~~eAi 190 (222)
.|.+....|+ ++++++++.+++. .+|.-..+++.-+.++.++| ++++|+
T Consensus 69 R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~--------~~pK~y~aW~hR~w~l~~l~~~~~~~el 129 (567)
T 1dce_A 69 RREVLQHLETEKSPEESAALVKAELGFLESCLR--------VNPKSYGTWHHRCWLLSRLPEPNWAREL 129 (567)
T ss_dssp HHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHH--------HCTTCHHHHHHHHHHHHTCSSCCHHHHH
T ss_pred HHHHHHhcccccchhhhhhhHHHHHHHHHHHHH--------hCCCCHHHHHHHHHHHHHcccccHHHHH
Confidence 4555555555 5555555555553 67888888888888888888 558888
No 266
>3myv_A SUSD superfamily protein; RAGB, SUSD and hypothetical proteins, structural genomics, J center for structural genomics, JCSG; HET: MSE; 1.80A {Bacteroides vulgatus}
Probab=35.45 E-value=27 Score=31.59 Aligned_cols=32 Identities=13% Similarity=0.015 Sum_probs=25.3
Q ss_pred CChHHHHHHHHHHHHHHHcCChhhHhhchHHh
Q 027539 165 YHRTTASTYSLLAVVLYHTGDFNQVRQSSVVF 196 (222)
Q Consensus 165 ~HpevA~~y~~LA~vy~~~Gd~~eAi~~~~~~ 196 (222)
-++.-..++..||+||..+|++++|+.+....
T Consensus 185 gr~tk~aa~allarvyL~~~~~~~A~~~a~~v 216 (454)
T 3myv_A 185 GRMNKYAARALLARIYLYHDDNRKAFDLADQL 216 (454)
T ss_dssp TSCCHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred CeecHHHHHHHHHHHHHhcccHHHHHHHHHHH
Confidence 45566667889999999999999999555544
No 267
>3re2_A Predicted protein; menin, multiple endocrine neoplasia 1, tumor suppressor, MIX lineage leukemia, unknown function; 1.95A {Nematostella vectensis}
Probab=34.88 E-value=60 Score=29.94 Aligned_cols=41 Identities=15% Similarity=0.126 Sum_probs=37.6
Q ss_pred HHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHcCChhhHh
Q 027539 147 AVNYGTKALARMIAVCGPYHRTTASTYSLLAVVLYHTGDFNQVR 190 (222)
Q Consensus 147 A~~L~~eAL~i~eqV~G~~HpevA~~y~~LA~vy~~~Gd~~eAi 190 (222)
+++||.||+..-...|+.-|-- -|..+|.-||.-|++.||+
T Consensus 276 ~l~L~~~AI~sa~~yY~n~HvY---PYtylgGy~yR~~~~reAl 316 (472)
T 3re2_A 276 AEELFKEAITVAKREYSDHHIY---PYTYLGGYYYRKKKYYEAI 316 (472)
T ss_dssp HHHHHHHHHHHHHHHSTTCCSH---HHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHHHHHHHhccCCcc---chhhhhhhhhhcchHHHHH
Confidence 7799999999999999999954 5788999999999999999
No 268
>2e2a_A Protein (enzyme IIA); helical bundles, PTS, transferase, phosphotransferase system; 2.10A {Lactococcus lactis} SCOP: a.7.2.1 PDB: 1e2a_A
Probab=34.65 E-value=76 Score=23.53 Aligned_cols=36 Identities=19% Similarity=0.173 Sum_probs=29.1
Q ss_pred CchhHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHH
Q 027539 124 TSADGRTLLESSKIALDKGKLEDAVNYGTKALARMI 159 (222)
Q Consensus 124 ~s~~a~~lle~g~~~l~qG~~e~A~~L~~eAL~i~e 159 (222)
.+.+|+...-.|-....+|++++|.+++.+|-.-+.
T Consensus 16 ~aG~ArS~~~eAl~~Ak~g~fe~A~~~l~eA~~~l~ 51 (105)
T 2e2a_A 16 YAGDARSKLLEALKAAENGDFAKADSLVVEAGSCIA 51 (105)
T ss_dssp HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred HHhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHH
Confidence 457788887788888899999999999988876443
No 269
>2crb_A Nuclear receptor binding factor 2; NRBF-2, MIT domain, helix bundle, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.7.16.1
Probab=34.30 E-value=58 Score=24.04 Aligned_cols=32 Identities=22% Similarity=0.205 Sum_probs=25.4
Q ss_pred HHHHHHhcCChHHHHHHHHHHHHHHHHHhCCC
Q 027539 134 SSKIALDKGKLEDAVNYGTKALARMIAVCGPY 165 (222)
Q Consensus 134 ~g~~~l~qG~~e~A~~L~~eAL~i~eqV~G~~ 165 (222)
.+..++..|+|++|++...+|...+....--.
T Consensus 21 rAe~ll~~gkydeAIech~kAa~yL~eAmklt 52 (97)
T 2crb_A 21 RADRLLAAGKYEEAISCHRKATTYLSEAMKLT 52 (97)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHhcCCHHHHHHHHHHHHHHHHHHHHhh
Confidence 35667899999999999999988777665544
No 270
>1wcr_A PTS system, N, N'-diacetylchitobiose-specific IIA component; mutagenesis, transferase, sugar transport, phosphotransferase; NMR {Escherichia coli} PDB: 2wy2_A 2wwv_A
Probab=34.27 E-value=78 Score=23.37 Aligned_cols=36 Identities=14% Similarity=0.133 Sum_probs=29.1
Q ss_pred CchhHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHH
Q 027539 124 TSADGRTLLESSKIALDKGKLEDAVNYGTKALARMI 159 (222)
Q Consensus 124 ~s~~a~~lle~g~~~l~qG~~e~A~~L~~eAL~i~e 159 (222)
.+.+|+...-.|-....+|++++|.+++.+|-.-+.
T Consensus 14 ~aG~Ars~~~eAl~~Ak~g~fe~A~~~l~eA~~~l~ 49 (103)
T 1wcr_A 14 NSGQARSLAYAALKQAKQGDFAAAKAMMDQSRMALN 49 (103)
T ss_dssp HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred HHhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHH
Confidence 357788887788888899999999999988876444
No 271
>3u84_A Menin; MLL, JUND, ledgf, TPR, transglutaminase-like, transcription, epigenetics, cancer; 2.50A {Homo sapiens} PDB: 3u85_A 3u86_A 3u88_A*
Probab=33.46 E-value=57 Score=30.63 Aligned_cols=42 Identities=17% Similarity=0.110 Sum_probs=38.0
Q ss_pred HHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHcCChhhHh
Q 027539 146 DAVNYGTKALARMIAVCGPYHRTTASTYSLLAVVLYHTGDFNQVR 190 (222)
Q Consensus 146 ~A~~L~~eAL~i~eqV~G~~HpevA~~y~~LA~vy~~~Gd~~eAi 190 (222)
.+++||+||+..-...|+.-|-- -|..+|.-||.-|++-||+
T Consensus 297 ~~~~L~~~AI~sa~~~Y~n~HvY---PYtYlgGy~yR~~~~reAl 338 (550)
T 3u84_A 297 DPLTLYHKGIASAKTYYRDEHIY---PYMYLAGYHCRNRNVREAL 338 (550)
T ss_dssp CHHHHHHHHHHHHHHHSTTCCSH---HHHHHHHHHHHTTCHHHHH
T ss_pred CHHHHHHHHHHHHHHHhccCCcc---ceeecchhhhhcchHHHHH
Confidence 46799999999999999999954 5788999999999999999
No 272
>3k1s_A PTS system, cellobiose-specific IIA component; all alpha protein, spectrin repeat-like, transferase, structural genomics; HET: MSE; 2.30A {Bacillus anthracis} SCOP: a.7.2.0
Probab=32.69 E-value=84 Score=23.45 Aligned_cols=35 Identities=20% Similarity=0.212 Sum_probs=28.1
Q ss_pred CchhHHHHHHHHHHHHhcCChHHHHHHHHHHHHHH
Q 027539 124 TSADGRTLLESSKIALDKGKLEDAVNYGTKALARM 158 (222)
Q Consensus 124 ~s~~a~~lle~g~~~l~qG~~e~A~~L~~eAL~i~ 158 (222)
.+.+|+...-.|-....+|++++|.+++.+|-.-+
T Consensus 18 ~aG~Ars~~~eAl~~Ak~gdfe~A~~~l~eA~~~l 52 (109)
T 3k1s_A 18 NSGNARSFAMEALQFAKQGKMAEADEAMVKAKEAI 52 (109)
T ss_dssp HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Confidence 45778877777777888999999999999886543
No 273
>3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A*
Probab=31.97 E-value=39 Score=29.76 Aligned_cols=70 Identities=11% Similarity=-0.031 Sum_probs=49.9
Q ss_pred cccccccccc-------cccCchh--HHHHHHHHHHHHh-----cCChHHHHHHHHHHHHHHHHHhCCCChHH-HHHHHH
Q 027539 111 IVSMVPVCKH-------VGCTSAD--GRTLLESSKIALD-----KGKLEDAVNYGTKALARMIAVCGPYHRTT-ASTYSL 175 (222)
Q Consensus 111 I~ni~PvVK~-------~~p~s~~--a~~lle~g~~~l~-----qG~~e~A~~L~~eAL~i~eqV~G~~Hpev-A~~y~~ 175 (222)
.+..+|.+|. ..|+..+ |...+ |..+.. -|..+.|.++|.+||.| .|.= +..+..
T Consensus 175 Al~~l~~A~a~lerAleLDP~~~~GsA~~~L--G~lY~~vPp~~gGd~ekA~~~ferAL~L--------nP~~~id~~v~ 244 (301)
T 3u64_A 175 LPDTVHAAVMMLERACDLWPSYQEGAVWNVL--TKFYAAAPESFGGGMEKAHTAFEHLTRY--------CSAHDPDHHIT 244 (301)
T ss_dssp CHHHHHHHHHHHHHHHHHCTTHHHHHHHHHH--HHHHHHSCTTTTCCHHHHHHHHHHHHHH--------CCTTCSHHHHH
T ss_pred HHHhHHHHHHHHHHHHHhCCCcccCHHHHHH--HHHHHhCCCccCCCHHHHHHHHHHHHHh--------CCCCCchHHHH
Confidence 3466666664 4566444 44444 777777 38999999999999987 3432 455667
Q ss_pred HHHHHHH-cCChhhHh
Q 027539 176 LAVVLYH-TGDFNQVR 190 (222)
Q Consensus 176 LA~vy~~-~Gd~~eAi 190 (222)
.|..+.. +||+++|.
T Consensus 245 YA~~l~~~~gd~~~a~ 260 (301)
T 3u64_A 245 YADALCIPLNNRAGFD 260 (301)
T ss_dssp HHHHTTTTTTCHHHHH
T ss_pred HHHHHHHhcCCHHHHH
Confidence 7888877 59999999
No 274
>4gq2_M Nucleoporin NUP120; beta propeller alpha helical, component of nuclear pore COMP transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4fhm_B
Probab=31.73 E-value=54 Score=32.74 Aligned_cols=67 Identities=15% Similarity=0.120 Sum_probs=48.9
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHHHHH-------------HHHhCCCC--hHHHHHHHHHHHHHHHcCChhhHhhchHHh
Q 027539 132 LESSKIALDKGKLEDAVNYGTKALARM-------------IAVCGPYH--RTTASTYSLLAVVLYHTGDFNQVRQSSVVF 196 (222)
Q Consensus 132 le~g~~~l~qG~~e~A~~L~~eAL~i~-------------eqV~G~~H--pevA~~y~~LA~vy~~~Gd~~eAi~~~~~~ 196 (222)
+-.|++++..|++++|.++|.+|-.-. ..+.++.. .-.+.-|..++.++.+.|-++-++ .|
T Consensus 844 yv~gr~~L~~ge~~~A~~~F~kAA~gl~~~~~~~~~~~~~~~ll~~~e~~~~~~~YY~hV~~LFE~~~a~~~vi----~f 919 (950)
T 4gq2_M 844 YLKALIYLKSKEAVKAVRCFKTTSLVLYSHTSQFAVLREFQEIAEKYHHQNLLSCYYLHLSKKLFEESAYIDAL----EF 919 (950)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHTCCCTTCSSCCSCGGGHHHHHHHHHTTTCSHHHHHHHHHHHHHHHTTCHHHHH----HH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHhhhcccCcccccchhhhhhccCcccccchhHHHHHHHHHHHHhcCCHHHHH----HH
Confidence 558999999999999999998775211 11111111 123458999999999999999999 77
Q ss_pred hhhhCCCCceEE
Q 027539 197 QCQLGDSKSSII 208 (222)
Q Consensus 197 ~~~~~~~~~a~~ 208 (222)
. +.|+.
T Consensus 920 A------~lAI~ 925 (950)
T 4gq2_M 920 S------LLADA 925 (950)
T ss_dssp H------HHHHH
T ss_pred H------HHHHh
Confidence 7 66654
No 275
>3l8r_A PTCA, putative PTS system, cellobiose-specific IIA component; helix; 2.50A {Streptococcus mutans} SCOP: a.7.2.0
Probab=30.72 E-value=92 Score=23.71 Aligned_cols=36 Identities=14% Similarity=0.108 Sum_probs=28.8
Q ss_pred CchhHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHH
Q 027539 124 TSADGRTLLESSKIALDKGKLEDAVNYGTKALARMI 159 (222)
Q Consensus 124 ~s~~a~~lle~g~~~l~qG~~e~A~~L~~eAL~i~e 159 (222)
.+.+|+...-.|-....+|++++|.+++.+|-.-+.
T Consensus 33 ~aG~ARS~~~eAl~~Ak~gdfe~A~~~l~eA~e~l~ 68 (120)
T 3l8r_A 33 NSGNARSIVHEAFDAMREKNYILAEQKLQEANDELL 68 (120)
T ss_dssp HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH
Confidence 467788877777778889999999999998866443
No 276
>3kez_A Putative sugar binding protein; structural genomics, joint C structural genomics, JCSG, protein structure initiative; 1.90A {Bacteroides vulgatus atcc 8482}
Probab=30.10 E-value=34 Score=30.95 Aligned_cols=33 Identities=15% Similarity=0.135 Sum_probs=25.7
Q ss_pred CCChHHHHHHHHHHHHHHHcCChhhHhhchHHh
Q 027539 164 PYHRTTASTYSLLAVVLYHTGDFNQVRQSSVVF 196 (222)
Q Consensus 164 ~~HpevA~~y~~LA~vy~~~Gd~~eAi~~~~~~ 196 (222)
.-++.-..++..||+||..+|++++|+......
T Consensus 190 ~gr~tk~aa~allArvyL~~~~~~~A~~~a~~v 222 (461)
T 3kez_A 190 KGKVNRWAAMTLLSRVYLYKGEYNEALTMAENA 222 (461)
T ss_dssp TTSCCHHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred CCeeeHHHHHHHHHHHHHHhCCHHHHHHHHHHH
Confidence 345666677888999999999999999555443
No 277
>2zan_A Vacuolar protein sorting-associating protein 4B; SKD1, VPS4B, AAA ATPase, ATP-binding, coiled coil, membrane, nucleotide-binding, phosphorylation; HET: ATP; 3.00A {Mus musculus} PDB: 2zam_A* 2zao_A* 2jqh_A 2jqk_A 1wr0_A 2jq9_A 2k3w_A 1yxr_A
Probab=28.54 E-value=12 Score=33.89 Aligned_cols=51 Identities=12% Similarity=0.096 Sum_probs=0.0
Q ss_pred hhHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHhC--CCChHHHHHHHHH
Q 027539 126 ADGRTLLESSKIALDKGKLEDAVNYGTKALARMIAVCG--PYHRTTASTYSLL 176 (222)
Q Consensus 126 ~~a~~lle~g~~~l~qG~~e~A~~L~~eAL~i~eqV~G--~~HpevA~~y~~L 176 (222)
..|.+++..|...-..|++++|+.+|.+|+..+.+..= +..|.+-..+..-
T Consensus 9 ~~A~~~~~~Av~~D~~g~~~eA~~~Y~~a~~~l~~~~k~e~~~~~~k~~ir~k 61 (444)
T 2zan_A 9 QKAIDLASKAAQEDKAGNYEEALQLYQHAVQYFLHVVKYEAQGDKAKQSIRAK 61 (444)
T ss_dssp -----------------------------------------------------
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHhhccChHHHHHHHHH
Confidence 35677888888888899999999999999999988652 2455544444433
No 278
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=28.27 E-value=90 Score=28.99 Aligned_cols=63 Identities=8% Similarity=-0.010 Sum_probs=47.4
Q ss_pred cccCchhHHHHHHHHHHHHhcC--ChHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHcC-ChhhHhhchHHhh
Q 027539 121 VGCTSADGRTLLESSKIALDKG--KLEDAVNYGTKALARMIAVCGPYHRTTASTYSLLAVVLYHTG-DFNQVRQSSVVFQ 197 (222)
Q Consensus 121 ~~p~s~~a~~lle~g~~~l~qG--~~e~A~~L~~eAL~i~eqV~G~~HpevA~~y~~LA~vy~~~G-d~~eAi~~~~~~~ 197 (222)
.+|++..|-. ..|-+...-| .++++++++.+++.+ +|.-..+++.-+.+...+| .+++|+ +|.
T Consensus 102 ~~pK~y~aW~--hR~w~l~~l~~~~~~~el~~~~k~l~~--------d~~N~~aW~~R~~~l~~l~~~~~~el----~~~ 167 (567)
T 1dce_A 102 VNPKSYGTWH--HRCWLLSRLPEPNWARELELCARFLEA--------DERNFHCWDYRRFVAAQAAVAPAEEL----AFT 167 (567)
T ss_dssp HCTTCHHHHH--HHHHHHHTCSSCCHHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHTCCCHHHHH----HHH
T ss_pred hCCCCHHHHH--HHHHHHHHcccccHHHHHHHHHHHHhh--------ccccccHHHHHHHHHHHcCCChHHHH----HHH
Confidence 3444444422 2455666667 569999999999985 6778899999999999999 899998 665
No 279
>3snx_A SUSD homolog, putative SUSD-like carbohydrate binding protein; alpha-alpha superhelix, structural genomics; HET: MSE; 1.88A {Bacteroides thetaiotaomicron}
Probab=28.02 E-value=54 Score=29.76 Aligned_cols=31 Identities=16% Similarity=0.303 Sum_probs=25.0
Q ss_pred CChHHHHHHHHHHHHHHHcCChhhHhhchHH
Q 027539 165 YHRTTASTYSLLAVVLYHTGDFNQVRQSSVV 195 (222)
Q Consensus 165 ~HpevA~~y~~LA~vy~~~Gd~~eAi~~~~~ 195 (222)
-++.-..++..||+||..+|++++|+.+...
T Consensus 186 gr~tk~aA~aLlARvyL~~~~~~~A~~~a~~ 216 (460)
T 3snx_A 186 FKPNTDVVNGLMARAYLLTGQWGEAAKAAEA 216 (460)
T ss_dssp TSCCHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred cccCHHHHHHHHHHHHHHhcCHHHHHHHHHH
Confidence 3566677888999999999999999954443
No 280
>3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans}
Probab=27.36 E-value=30 Score=29.81 Aligned_cols=50 Identities=8% Similarity=-0.005 Sum_probs=40.3
Q ss_pred HHHHHHHhcC--ChHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHH----HHc---CChhhHh
Q 027539 133 ESSKIALDKG--KLEDAVNYGTKALARMIAVCGPYHRTTASTYSLLAVVL----YHT---GDFNQVR 190 (222)
Q Consensus 133 e~g~~~l~qG--~~e~A~~L~~eAL~i~eqV~G~~HpevA~~y~~LA~vy----~~~---Gd~~eAi 190 (222)
..|.+....| .++++++++.++|. .||.-.++++.-+.++ ..+ +++++++
T Consensus 72 ~R~~~L~~l~~~~~~eeL~~~~~~L~--------~nPk~y~aW~~R~~iL~~~~~~l~~~~~~~~EL 130 (306)
T 3dra_A 72 YRFNILKNLPNRNLYDELDWCEEIAL--------DNEKNYQIWNYRQLIIGQIMELNNNDFDPYREF 130 (306)
T ss_dssp HHHHHHHTCTTSCHHHHHHHHHHHHH--------HCTTCCHHHHHHHHHHHHHHHHTTTCCCTHHHH
T ss_pred HHHHHHHHcccccHHHHHHHHHHHHH--------HCcccHHHHHHHHHHHHHHHHhccccCCHHHHH
Confidence 3566777777 88999999888885 5788888888888888 777 7888888
No 281
>2hsb_A Hypothetical UPF0332 protein AF0298; DUF103 family, structural genomics, joint center for structu genomics, JCSG; HET: MSE PG4; 1.95A {Archaeoglobus fulgidus}
Probab=26.70 E-value=1e+02 Score=22.17 Aligned_cols=45 Identities=20% Similarity=0.190 Sum_probs=28.8
Q ss_pred hhHHHHHHHHHHHHhcCChHHH-------HHHHHHHHHHHHHHhCCCChHHH
Q 027539 126 ADGRTLLESSKIALDKGKLEDA-------VNYGTKALARMIAVCGPYHRTTA 170 (222)
Q Consensus 126 ~~a~~lle~g~~~l~qG~~e~A-------~~L~~eAL~i~eqV~G~~HpevA 170 (222)
..|++.++.|+..+..|.++.| .....+|+-+...+...-|..+.
T Consensus 10 ~~A~~~L~~A~~~~~~g~y~~a~~~ay~a~~~alKAlL~~~g~~~~tH~~~~ 61 (126)
T 2hsb_A 10 RKAEKLVQDAKKEFEMGLYERCCSTAYYAMFHAAKAMLLGYGRDSKTHRGTI 61 (126)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHTTCCCSSHHHHH
T ss_pred HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHhCCCCCCCcHHHH
Confidence 3578899999999999999966 34444444443333334455444
No 282
>3sy1_A UPF0001 protein YGGS; engineered protein, structural genomics, PSI-biology, protei structure initiative; HET: MES; 1.47A {Escherichia coli} PDB: 1w8g_A*
Probab=26.32 E-value=11 Score=31.84 Aligned_cols=80 Identities=9% Similarity=0.074 Sum_probs=46.6
Q ss_pred cCCcccccccccccccCchhHHHHHHHHHHHHhcCChHHHHHHHHHHHHHH-HH----HhCCCChHHHHHHHHHHHHHHH
Q 027539 108 RDDIVSMVPVCKHVGCTSADGRTLLESSKIALDKGKLEDAVNYGTKALARM-IA----VCGPYHRTTASTYSLLAVVLYH 182 (222)
Q Consensus 108 ~~DI~ni~PvVK~~~p~s~~a~~lle~g~~~l~qG~~e~A~~L~~eAL~i~-eq----V~G~~HpevA~~y~~LA~vy~~ 182 (222)
++++ .+++|+|. ++ ...++++++.|...+.....+||.++........ .. +.|+.-+.-+...-....+-..
T Consensus 27 ~~~v-~l~AV~Ka-hg-~~~i~~~~~~G~~~fgen~vqEa~~kr~~~~~~~~~~i~w~~iG~lq~nk~~~~~~~~~~i~s 103 (245)
T 3sy1_A 27 PEEI-TLVAVSKT-KP-ASAIAEAIDAGQRQFSEHYVQEGVDKIRHFQELGVTGLEWNFAGPLQSNKSRLVAEHFDWCIT 103 (245)
T ss_dssp GGGC-EEEEECTT-CC-HHHHHHHHHTTCCEEEESSHHHHHHHHHHHHHHTCCSCEEEECSCCCGGGHHHHHHHCSEEEE
T ss_pred CCCc-EEEEEECC-CC-HHHHHHHHHcCCCEEEEecHHHHHHHHHhhhhccCCCeEEeecCCCChHHHHHHHHHCCEEEe
Confidence 5666 89999998 44 3457778877777777778888888876422110 01 2477766533322111122223
Q ss_pred cCChhhHh
Q 027539 183 TGDFNQVR 190 (222)
Q Consensus 183 ~Gd~~eAi 190 (222)
..+.+.|.
T Consensus 104 Vds~~~a~ 111 (245)
T 3sy1_A 104 IDRLRIAT 111 (245)
T ss_dssp ECCHHHHH
T ss_pred cCCHHHHH
Confidence 45666666
No 283
>2wb7_A PT26-6P; extra chromosomal elements, unknown function; 2.60A {Thermococcus SP}
Probab=25.40 E-value=74 Score=30.13 Aligned_cols=42 Identities=14% Similarity=0.081 Sum_probs=37.4
Q ss_pred HHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHcCCh
Q 027539 145 EDAVNYGTKALARMIAVCGPYHRTTASTYSLLAVVLYHTGDF 186 (222)
Q Consensus 145 e~A~~L~~eAL~i~eqV~G~~HpevA~~y~~LA~vy~~~Gd~ 186 (222)
+.|.+.|++|+..++++-.-..|+-..-|.++|..|-..|||
T Consensus 449 ~kAi~~Y~~Ai~~L~k~~~tdd~~~v~~~~~~ak~yE~aGDy 490 (526)
T 2wb7_A 449 QGAIDEYKAAINDLQKAAQQDDYQMFLNYLNAAKKHEMAGDY 490 (526)
T ss_dssp HHHHHHHHHHHHHHHHHTTCCSHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhhhccCCHHHHHHHHHHhhhhhhccHH
Confidence 368899999999999999999999999999999998777775
No 284
>4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae}
Probab=25.19 E-value=89 Score=30.75 Aligned_cols=63 Identities=8% Similarity=0.170 Sum_probs=42.1
Q ss_pred HHHHHHHHHHHHHHHHhCC----------CChHHHHHHHHHHHHHHHcCChhhHh-----------------hchHHhhh
Q 027539 146 DAVNYGTKALARMIAVCGP----------YHRTTASTYSLLAVVLYHTGDFNQVR-----------------QSSVVFQC 198 (222)
Q Consensus 146 ~A~~L~~eAL~i~eqV~G~----------~HpevA~~y~~LA~vy~~~Gd~~eAi-----------------~~~~~~~~ 198 (222)
+|..++++++.-+....-. .+|-.+..+..-|.-+-..||++-|+ ....+.|.
T Consensus 303 ~av~ll~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~LL~~Qa~FLl~K~~~elAL~~Ak~AV~~aPseF~tW~~La~vYi 382 (754)
T 4gns_B 303 DMITILNETLDPLLSLLNDLPPRDADSARLMNCMSDLLNIQTNFLLNRGDYELALGVSNTSTELALDSFESWYNLARCHI 382 (754)
T ss_dssp HHHHHHHHHHHHHHHHHHTCSSCCHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhhhhhhhcccccccccccCcchHHHHHHHHHHhccCcHHHHHHHHHHHHhcCchhhHHHHHHHHHHH
Confidence 5778888888644332221 23444455666677777889999998 44556778
Q ss_pred hhCCCCceEE
Q 027539 199 QLGDSKSSII 208 (222)
Q Consensus 199 ~~~~~~~a~~ 208 (222)
.+|||++||.
T Consensus 383 ~l~d~e~ALL 392 (754)
T 4gns_B 383 KKEEYEKALF 392 (754)
T ss_dssp HTTCHHHHHH
T ss_pred HhccHHHHHH
Confidence 8888888874
No 285
>4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-}
Probab=25.11 E-value=64 Score=32.73 Aligned_cols=62 Identities=13% Similarity=0.078 Sum_probs=44.5
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHHH-------------HHHHHh--CCCChHHHHHHHHHHHHHHHcCChhhHhhchHHh
Q 027539 132 LESSKIALDKGKLEDAVNYGTKALA-------------RMIAVC--GPYHRTTASTYSLLAVVLYHTGDFNQVRQSSVVF 196 (222)
Q Consensus 132 le~g~~~l~qG~~e~A~~L~~eAL~-------------i~eqV~--G~~HpevA~~y~~LA~vy~~~Gd~~eAi~~~~~~ 196 (222)
+=.|++++..|++++|.++|.+|-. -...+. .+...-.+.-|..++.++.+.|-++.|+ .|
T Consensus 846 yl~g~~~L~~ge~~~A~~~F~kaa~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~YY~hv~~LFe~~~~~~~vi----~f 921 (1139)
T 4fhn_B 846 YLKALIYLKSKEAVKAVRCFKTTSLVLYSHTSQFAVLREFQEIAEKYHHQNLLSCYYLHLSKKLFEESAYIDAL----EF 921 (1139)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHTCCCSCTTCCCSCSSHHHHHHHHHTTTSCCSSHHHHHHHHHHHHHTSCCHHHH----HH
T ss_pred HHHHHHHHhcCCHHHHHHHHHHHhhhhcccchhhhhhcccccccccccccccHHHHHHHHHHHHHHcCCHHHHH----HH
Confidence 4579999999999999999987732 111111 1112224567899999999999999998 66
Q ss_pred h
Q 027539 197 Q 197 (222)
Q Consensus 197 ~ 197 (222)
.
T Consensus 922 a 922 (1139)
T 4fhn_B 922 S 922 (1139)
T ss_dssp H
T ss_pred H
Confidence 6
No 286
>3mcx_A SUSD superfamily protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE GOL; 1.49A {Bacteroides thetaiotaomicron}
Probab=24.44 E-value=37 Score=30.77 Aligned_cols=33 Identities=12% Similarity=0.122 Sum_probs=25.7
Q ss_pred CChHHHHHHHHHHHHHHHcCChhhHhhchHHhh
Q 027539 165 YHRTTASTYSLLAVVLYHTGDFNQVRQSSVVFQ 197 (222)
Q Consensus 165 ~HpevA~~y~~LA~vy~~~Gd~~eAi~~~~~~~ 197 (222)
-++.-..++..||+||..+|++++|+......-
T Consensus 197 gr~tk~aa~allarvyL~~~~~~~A~~~a~~vi 229 (477)
T 3mcx_A 197 GYINYWAAQALLSRVYLNMGEYQKAYDAATDVI 229 (477)
T ss_dssp TSCCHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred CcCcHHHHHHHHHHHHHHhcCHHHHHHHHHHHH
Confidence 355556677899999999999999996655543
No 287
>3lew_A SUSD-like carbohydrate binding protein; structural genomics, center for structural genomics, JCSG, protein structure INI PSI-2; HET: MSE 1PE 2PE; 1.70A {Bacteroides vulgatus}
Probab=23.82 E-value=66 Score=29.42 Aligned_cols=32 Identities=6% Similarity=0.056 Sum_probs=25.4
Q ss_pred CChHHHHHHHHHHHHHHHcCChhhHhhchHHh
Q 027539 165 YHRTTASTYSLLAVVLYHTGDFNQVRQSSVVF 196 (222)
Q Consensus 165 ~HpevA~~y~~LA~vy~~~Gd~~eAi~~~~~~ 196 (222)
-++.-..++..||+||..+|++++|+.+....
T Consensus 198 gr~tk~aA~allArvyL~~~~~~~A~~~a~~v 229 (495)
T 3lew_A 198 HKIDNEVVLGILSRACLYARQWEKAKTYSDKL 229 (495)
T ss_dssp TSCCHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred CcccHHHHHHHHHHHHHHhhhHHHHHHHHHHH
Confidence 35666778889999999999999999555443
No 288
>2cfu_A SDSA1; SDS-hydrolase, lactamase, hydrolase; HET: 1DB; 1.9A {Pseudomonas aeruginosa} SCOP: d.106.1.3 d.157.1.13 PDB: 2cfz_A* 2cg2_A 2cg3_A*
Probab=23.38 E-value=1e+02 Score=29.41 Aligned_cols=55 Identities=16% Similarity=0.160 Sum_probs=42.6
Q ss_pred hHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHcCChhhH
Q 027539 127 DGRTLLESSKIALDKGKLEDAVNYGTKALARMIAVCGPYHRTTASTYSLLAVVLYHTGDFNQV 189 (222)
Q Consensus 127 ~a~~lle~g~~~l~qG~~e~A~~L~~eAL~i~eqV~G~~HpevA~~y~~LA~vy~~~Gd~~eA 189 (222)
-++.+++.|+..+++|++.-|.++.+.++.. .|+-..+-..+|.+|-++|.-.+.
T Consensus 448 g~~~~~~~a~~~~~~g~~~wa~~l~~~~~~~--------~p~~~~a~~l~a~~~~~l~~~~~~ 502 (658)
T 2cfu_A 448 GAERLLEQARASYARGEYRWVVEVVNRLVFA--------EPDNRAARELQADALEQLGYQAEN 502 (658)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHHHHHCSS
T ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--------CCCcHHHHHHHHHHHHHHHHhccC
Confidence 3677889999999999999999999887754 445555667788888888765444
No 289
>1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1
Probab=22.00 E-value=1.1e+02 Score=23.85 Aligned_cols=52 Identities=13% Similarity=0.112 Sum_probs=36.7
Q ss_pred HHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHcC
Q 027539 128 GRTLLESSKIALDKGKLEDAVNYGTKALARMIAVCGPYHRTTASTYSLLAVVLYHTG 184 (222)
Q Consensus 128 a~~lle~g~~~l~qG~~e~A~~L~~eAL~i~eqV~G~~HpevA~~y~~LA~vy~~~G 184 (222)
.+-++..|..+...|+|++|..++..+|.+- |.|+....-...+-..-.+-|
T Consensus 71 rd~lY~LAv~~~kl~~Y~~A~~y~~~lL~ie-----P~n~QA~~Lk~~ie~~~~kdg 122 (152)
T 1pc2_A 71 RDYVFYLAVGNYRLKEYEKALKYVRGLLQTE-----PQNNQAKELERLIDKAMKKDG 122 (152)
T ss_dssp HHHHHHHHHHHHHTSCHHHHHHHHHHHHHHC-----TTCHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHhcC-----CCCHHHHHHHHHHHHHHHHhh
Confidence 3447788999999999999999999999863 566665554444443333333
No 290
>1o3u_A Conserved hypothetical protein TM0613; structural genomics, joint center for structural genomics, J protein structure initiative, PSI; 1.75A {Thermotoga maritima} SCOP: a.24.16.3
Probab=21.23 E-value=1.3e+02 Score=22.37 Aligned_cols=39 Identities=21% Similarity=0.141 Sum_probs=28.5
Q ss_pred ccccCchhHHHHHHHHHHHHhcCChHHHHHHHHHHHHHH
Q 027539 120 HVGCTSADGRTLLESSKIALDKGKLEDAVNYGTKALARM 158 (222)
Q Consensus 120 ~~~p~s~~a~~lle~g~~~l~qG~~e~A~~L~~eAL~i~ 158 (222)
|-+..-..|++.++.|+..+..|.++.|.=...||....
T Consensus 8 ~~~~~~~~A~~dL~~A~~~l~~g~y~~a~F~aqQA~Eka 46 (135)
T 1o3u_A 8 HHHHHMDAAKDDLEHAKHDLEHGFYNWACFSSQQAAEKA 46 (135)
T ss_dssp --CHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred hhhhhHHHHHHHHHHHHHHHHCCChHHHHHHHHHHHHHH
Confidence 333445678999999999999999997776666665543
No 291
>3fnb_A Acylaminoacyl peptidase SMU_737; alpha-beta-alpha sandwich, helix bundle, structural genomics protein structure initiative; HET: PGE; 2.12A {Streptococcus mutans}
Probab=21.13 E-value=1.6e+02 Score=25.25 Aligned_cols=74 Identities=8% Similarity=0.025 Sum_probs=54.8
Q ss_pred cCCcccccccccccccCc------hhHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHH---hCCCChHHHHHHHHHHH
Q 027539 108 RDDIVSMVPVCKHVGCTS------ADGRTLLESSKIALDKGKLEDAVNYGTKALARMIAV---CGPYHRTTASTYSLLAV 178 (222)
Q Consensus 108 ~~DI~ni~PvVK~~~p~s------~~a~~lle~g~~~l~qG~~e~A~~L~~eAL~i~eqV---~G~~HpevA~~y~~LA~ 178 (222)
+.||+.+.+-+|+..+.+ ..|+.+.+.|....+.|....|-+.|..|.+.|... ..+.+|.....+.....
T Consensus 43 ~~e~~~~~~~i~~~~~~~w~~~w~~~a~~~~~~a~~~~~~g~~~~a~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~ 122 (405)
T 3fnb_A 43 AGELFYIASGIRDGNPTDWCKRFNEHADYLEDEVERVKKVGYRDLISHLYFSACFSIRAALQFTDPKDSEFMENFRRMEK 122 (405)
T ss_dssp HHHHHHHHTTCCTTCHHHHHHHHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHHTCCTTSHHHHHHHHHHHH
T ss_pred HHHHHHHHhhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhhcCCCCCccHHHHHHHHHH
Confidence 467777777777766554 667777777878888999999999999999988865 35667777777765554
Q ss_pred HHH
Q 027539 179 VLY 181 (222)
Q Consensus 179 vy~ 181 (222)
.+.
T Consensus 123 ~~~ 125 (405)
T 3fnb_A 123 LFM 125 (405)
T ss_dssp HHH
T ss_pred HHH
Confidence 443
No 292
>2r17_C Vacuolar protein sorting-associated protein 35; protein transport, membrane, phosphorylation; 2.80A {Homo sapiens}
Probab=21.03 E-value=1e+02 Score=26.95 Aligned_cols=33 Identities=18% Similarity=0.111 Sum_probs=25.8
Q ss_pred HHHHHHHHHHHhcCC---hHHHHHHHHHHHHHHHHH
Q 027539 129 RTLLESSKIALDKGK---LEDAVNYGTKALARMIAV 161 (222)
Q Consensus 129 ~~lle~g~~~l~qG~---~e~A~~L~~eAL~i~eqV 161 (222)
+-.++.|.+.-+-|. -+.|+|+|.+|+.+||.-
T Consensus 100 rL~Lq~A~~ad~~~~~~~e~iaYEFf~qAf~iYEe~ 135 (298)
T 2r17_C 100 RLFLQGALAAGEIGFENHETVAYEFMSQAFSLYEDE 135 (298)
T ss_dssp HHHHHHHHHHHHHCCTTHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCccchhHHHHHHHHHHHHHHHhh
Confidence 455666676666665 678999999999999983
No 293
>3hw5_A Polymerase acidic protein; avian influenza virus, PA_N, AMP, phosphoprotein, hydrolase; HET: AMP; 1.81A {Influenza a virus} PDB: 3hw4_A* 3hw3_A* 3hw6_A 3ebj_A 2w69_A 4avl_A* 4avg_A* 4avq_A 4awf_A* 4awg_A* 4awh_A* 4awm_A* 4e5e_A 4e5f_A* 4e5g_A* 4e5h_A* 4e5i_A* 4e5j_A* 4e5l_A* 4awk_A*
Probab=20.81 E-value=55 Score=27.73 Aligned_cols=90 Identities=6% Similarity=0.002 Sum_probs=47.4
Q ss_pred CchhhhhHHHHHHhhcCCC-CCchHHHHHHHhhhhcCCCCCCCcccccchhhhhHHHHHHHhcccccccccccccchhhH
Q 027539 1 MVTQAFKHVLNGVIASVDY-LSDLSAAIASSLNFLFGCCEMEDEQSWNEDHILRLQWLRTFLGRRFGWSLKDEFQHLRKI 79 (222)
Q Consensus 1 mi~RaaKHilr~~l~~~~~-~~~~~~~iahfLNcLlg~~~~~~d~~~k~~~~~~~~~i~~~v~~rfry~L~~~~~~~~k~ 79 (222)
||++-||--...|--+-.. ++.+...--|+==|+.=++.+-.|+.-+. ...+.=......|.||++-+.-..--..
T Consensus 17 ~iV~~Ak~am~EygEdp~i~~~k~~~Ic~HlEVC~m~SD~~F~DE~Gks---~~~e~g~~n~~L~~rfeiIEGr~R~~Aw 93 (261)
T 3hw5_A 17 MIVELAEKAMKEYGEDPKIETNKFAAICTHLEVCFMYSDFHFIDERGES---TIIESGDPNALLKHRFEIIEGRDRTMAW 93 (261)
T ss_dssp HHHHHHHHHHHHTTCCTTTSHHHHHHHHHHHHHHHHHC----------------------------CEEECTTSCHHHHH
T ss_pred HHHHHHHHHHHHhccCccccHHHHHHHHhhheeeEEeccccccccCCce---eeccCCCcccccccceEEecCCcccchh
Confidence 5778888888888765432 23445555688778777776655554332 1111222345578899998766655667
Q ss_pred HHHHHHHHHHceee
Q 027539 80 SILRGLCHKVGLEL 93 (222)
Q Consensus 80 ~lLR~ic~K~GIQl 93 (222)
.+-|+||+.+||.-
T Consensus 94 ~vqnslc~~~giE~ 107 (261)
T 3hw5_A 94 TVVNSICNTTGVEK 107 (261)
T ss_dssp HHHHHHHHHSSCCC
T ss_pred hhHHHHHHhcCCCC
Confidence 78999999999974
Done!