Query 027541
Match_columns 222
No_of_seqs 113 out of 1142
Neff 8.5
Searched_HMMs 46136
Date Fri Mar 29 11:29:25 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/027541.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/027541hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 cd03750 proteasome_alpha_type_ 100.0 1.2E-62 2.6E-67 403.6 29.1 217 6-222 1-217 (227)
2 PRK03996 proteasome subunit al 100.0 7.1E-61 1.5E-65 396.5 29.1 220 3-222 7-227 (241)
3 cd03751 proteasome_alpha_type_ 100.0 1.3E-60 2.9E-65 387.3 27.4 211 3-213 1-212 (212)
4 PTZ00246 proteasome subunit al 100.0 3E-60 6.4E-65 395.2 29.0 221 2-222 1-229 (253)
5 TIGR03633 arc_protsome_A prote 100.0 4.1E-60 8.8E-65 388.0 28.9 218 5-222 2-220 (224)
6 KOG0176 20S proteasome, regula 100.0 1.9E-61 4E-66 371.3 19.1 220 3-222 5-229 (241)
7 cd03752 proteasome_alpha_type_ 100.0 6.2E-60 1.4E-64 384.1 27.7 210 4-213 1-213 (213)
8 cd03756 proteasome_alpha_arche 100.0 1.5E-59 3.3E-64 381.3 28.4 210 5-214 1-210 (211)
9 cd03755 proteasome_alpha_type_ 100.0 3.4E-59 7.4E-64 378.2 27.1 206 6-213 1-207 (207)
10 cd03749 proteasome_alpha_type_ 100.0 6.2E-59 1.3E-63 377.6 27.5 207 6-214 1-211 (211)
11 cd03754 proteasome_alpha_type_ 100.0 6E-59 1.3E-63 378.6 27.1 209 5-213 1-215 (215)
12 cd03753 proteasome_alpha_type_ 100.0 2.6E-58 5.5E-63 374.7 26.8 208 6-213 1-213 (213)
13 cd01911 proteasome_alpha prote 100.0 7.1E-58 1.5E-62 371.1 26.0 208 6-213 1-209 (209)
14 KOG0183 20S proteasome, regula 100.0 3.6E-58 7.7E-63 357.1 17.4 217 4-222 2-221 (249)
15 COG0638 PRE1 20S proteasome, a 100.0 2.6E-56 5.6E-61 367.1 28.0 216 4-221 1-219 (236)
16 KOG0184 20S proteasome, regula 100.0 1.7E-55 3.7E-60 343.8 20.8 214 3-216 5-219 (254)
17 KOG0863 20S proteasome, regula 100.0 2.9E-54 6.4E-59 338.5 21.8 220 1-222 1-224 (264)
18 KOG0181 20S proteasome, regula 100.0 3E-54 6.6E-59 330.7 18.7 221 1-222 1-221 (233)
19 KOG0178 20S proteasome, regula 100.0 3.5E-53 7.5E-58 328.5 21.0 217 2-218 1-221 (249)
20 KOG0182 20S proteasome, regula 100.0 6.4E-51 1.4E-55 316.1 22.8 220 3-222 6-230 (246)
21 cd03758 proteasome_beta_type_2 100.0 9.9E-47 2.1E-51 302.2 23.6 187 33-221 2-191 (193)
22 cd03761 proteasome_beta_type_5 100.0 1.4E-46 3E-51 300.2 23.9 185 33-221 1-187 (188)
23 TIGR03634 arc_protsome_B prote 100.0 6.2E-46 1.4E-50 295.7 23.9 182 32-217 1-184 (185)
24 cd03760 proteasome_beta_type_4 100.0 3.9E-46 8.5E-51 299.7 22.6 186 31-218 1-192 (197)
25 cd03759 proteasome_beta_type_3 100.0 7.7E-46 1.7E-50 297.5 23.3 185 31-219 2-190 (195)
26 TIGR03691 20S_bact_alpha prote 100.0 7.8E-46 1.7E-50 303.1 23.8 202 13-222 7-219 (228)
27 cd03764 proteasome_beta_archea 100.0 5.7E-45 1.2E-49 290.9 24.2 185 33-222 1-187 (188)
28 cd03757 proteasome_beta_type_1 100.0 1.2E-44 2.6E-49 294.0 23.1 187 29-219 5-203 (212)
29 TIGR03690 20S_bact_beta protea 100.0 1.5E-44 3.2E-49 294.8 23.6 190 31-222 1-202 (219)
30 PTZ00488 Proteasome subunit be 100.0 1.9E-44 4.2E-49 298.2 24.0 189 28-221 35-225 (247)
31 cd03763 proteasome_beta_type_7 100.0 3.4E-44 7.3E-49 286.7 23.7 183 33-220 1-185 (189)
32 cd03762 proteasome_beta_type_6 100.0 5.1E-44 1.1E-48 285.5 24.0 184 33-221 1-187 (188)
33 cd03765 proteasome_beta_bacter 100.0 4.9E-44 1.1E-48 293.0 24.4 186 33-219 1-203 (236)
34 PF00227 Proteasome: Proteasom 100.0 1.2E-43 2.6E-48 283.2 21.9 185 29-213 1-190 (190)
35 cd01912 proteasome_beta protea 100.0 2.9E-43 6.2E-48 281.2 23.5 184 33-220 1-187 (189)
36 cd01906 proteasome_protease_Hs 100.0 4.9E-42 1.1E-46 272.2 24.3 179 33-213 1-182 (182)
37 KOG0175 20S proteasome, regula 100.0 3.1E-38 6.8E-43 251.7 15.6 189 29-221 68-258 (285)
38 KOG0173 20S proteasome, regula 100.0 1.1E-37 2.4E-42 248.0 16.3 189 24-217 29-219 (271)
39 KOG0177 20S proteasome, regula 100.0 5E-37 1.1E-41 235.0 16.9 184 33-218 2-188 (200)
40 KOG0179 20S proteasome, regula 100.0 1.8E-36 4E-41 235.1 18.6 188 29-220 26-227 (235)
41 KOG0174 20S proteasome, regula 100.0 1.2E-36 2.5E-41 233.7 16.2 188 28-220 15-205 (224)
42 KOG0185 20S proteasome, regula 100.0 6.1E-34 1.3E-38 224.6 14.7 206 10-217 13-231 (256)
43 PRK05456 ATP-dependent proteas 100.0 1.8E-32 3.8E-37 214.6 17.9 165 32-212 1-171 (172)
44 KOG0180 20S proteasome, regula 100.0 2.6E-31 5.6E-36 200.7 17.1 187 30-220 6-196 (204)
45 cd01901 Ntn_hydrolase The Ntn 100.0 1.8E-30 3.8E-35 200.6 22.3 161 33-196 1-163 (164)
46 cd01913 protease_HslV Protease 100.0 9.6E-31 2.1E-35 203.5 18.8 163 33-212 1-170 (171)
47 TIGR03692 ATP_dep_HslV ATP-dep 100.0 2.1E-30 4.5E-35 201.7 18.1 163 33-212 1-170 (171)
48 PF10584 Proteasome_A_N: Prote 99.5 1.2E-14 2.7E-19 74.3 2.0 23 6-28 1-23 (23)
49 COG3484 Predicted proteasome-t 99.4 4.5E-12 9.9E-17 99.0 12.2 184 33-217 2-202 (255)
50 COG5405 HslV ATP-dependent pro 99.3 2.5E-11 5.5E-16 91.7 10.2 168 31-214 3-176 (178)
51 PF09894 DUF2121: Uncharacteri 97.4 0.024 5.1E-07 44.8 15.9 153 33-216 2-180 (194)
52 COG4079 Uncharacterized protei 95.9 0.5 1.1E-05 38.8 13.7 154 33-216 2-181 (293)
53 KOG3361 Iron binding protein i 91.2 0.48 1E-05 35.2 4.6 44 147-190 71-114 (157)
54 PF11211 DUF2997: Protein of u 60.3 19 0.00041 21.9 3.6 33 146-178 2-34 (48)
55 smart00481 POLIIIAc DNA polyme 56.8 12 0.00027 23.8 2.6 32 11-42 6-38 (67)
56 PF08529 NusA_N: NusA N-termin 50.2 37 0.0008 24.8 4.5 43 180-222 13-56 (122)
57 PF11773 PulG: Type II secreto 48.6 40 0.00086 23.0 4.0 40 181-221 33-72 (82)
58 PF07499 RuvA_C: RuvA, C-termi 44.5 17 0.00038 21.7 1.7 31 163-193 13-44 (47)
59 PF01592 NifU_N: NifU-like N t 44.2 88 0.0019 22.8 5.8 54 147-200 42-96 (126)
60 COG0822 IscU NifU homolog invo 41.9 1.2E+02 0.0026 23.1 6.3 45 148-193 48-92 (150)
61 PF10632 He_PIG_assoc: He_PIG 40.6 29 0.00063 18.7 1.9 23 132-154 4-26 (29)
62 PRK11325 scaffold protein; Pro 40.4 1E+02 0.0022 22.7 5.6 52 148-199 46-97 (127)
63 cd04512 Ntn_Asparaginase_2_lik 36.8 1.7E+02 0.0036 24.5 6.8 56 159-219 175-234 (248)
64 cd04513 Glycosylasparaginase G 34.4 2E+02 0.0043 24.2 7.0 59 159-219 186-248 (263)
65 KOG0330 ATP-dependent RNA heli 34.0 64 0.0014 28.9 4.1 124 69-196 99-233 (476)
66 COG1754 Uncharacterized C-term 33.8 28 0.0006 29.5 1.8 58 136-196 77-138 (298)
67 cd04702 ASRGL1_like ASRGL1_lik 32.1 2.1E+02 0.0046 24.1 6.7 56 159-219 178-237 (261)
68 PF14804 Jag_N: Jag N-terminus 32.0 89 0.0019 19.2 3.5 28 182-215 5-32 (52)
69 PRK02260 S-ribosylhomocysteina 31.7 2.3E+02 0.005 21.9 6.4 77 107-201 53-150 (158)
70 COG0279 GmhA Phosphoheptose is 31.1 59 0.0013 25.5 3.1 35 13-47 116-151 (176)
71 COG4728 Uncharacterized protei 31.0 59 0.0013 23.2 2.8 31 64-94 9-39 (124)
72 PF06057 VirJ: Bacterial virul 30.1 80 0.0017 25.3 3.8 34 104-141 44-77 (192)
73 TIGR01999 iscU FeS cluster ass 29.6 2E+02 0.0042 21.0 5.6 52 148-199 44-95 (124)
74 COG4831 Roadblock/LC7 domain [ 27.3 29 0.00062 24.4 0.7 10 11-20 18-27 (109)
75 PF02811 PHP: PHP domain; Int 26.5 56 0.0012 24.5 2.3 31 11-41 7-38 (175)
76 PRK14065 exodeoxyribonuclease 26.2 1.9E+02 0.004 19.9 4.4 30 168-197 32-61 (86)
77 cd05781 DNA_polB_B3_exo DEDDy 26.0 46 0.001 26.2 1.8 33 60-92 54-86 (188)
78 TIGR02000 NifU_proper Fe-S clu 24.6 2.7E+02 0.0058 23.8 6.3 50 148-197 44-94 (290)
79 KOG0083 GTPase Rab26/Rab37, sm 23.6 89 0.0019 23.7 2.8 39 30-71 7-45 (192)
80 PF08289 Flu_M1_C: Influenza M 23.5 2.5E+02 0.0054 19.2 5.1 48 77-124 39-86 (95)
81 PF06787 UPF0254: Uncharacteri 23.3 3.5E+02 0.0077 20.8 6.1 62 4-86 69-136 (160)
82 PF12385 Peptidase_C70: Papain 23.3 2.9E+02 0.0064 21.4 5.6 48 108-155 95-148 (166)
83 PF08958 DUF1871: Domain of un 22.9 1.5E+02 0.0033 20.0 3.6 29 168-196 42-70 (79)
84 PF06018 CodY: CodY GAF-like d 22.7 3.9E+02 0.0084 21.1 6.7 67 87-178 3-69 (177)
85 KOG3652 Uncharacterized conser 22.6 2.3E+02 0.005 27.4 5.7 98 99-200 209-306 (1215)
86 PF08140 Cuticle_1: Crustacean 22.4 1.6E+02 0.0034 17.2 3.0 30 11-47 4-33 (40)
87 PF01242 PTPS: 6-pyruvoyl tetr 21.9 2.1E+02 0.0045 20.6 4.5 46 77-122 43-98 (123)
88 PF08269 Cache_2: Cache domain 21.7 1.1E+02 0.0024 20.7 2.9 35 180-218 33-67 (95)
89 PF10740 DUF2529: Protein of u 20.7 48 0.001 26.0 0.9 56 10-65 85-149 (172)
90 PF03681 UPF0150: Uncharacteri 20.5 1.2E+02 0.0027 17.7 2.6 17 183-199 30-46 (48)
91 TIGR02261 benz_CoA_red_D benzo 20.4 1.3E+02 0.0028 25.3 3.5 51 136-194 104-158 (262)
No 1
>cd03750 proteasome_alpha_type_2 proteasome_alpha_type_2. The 20S proteasome, multisubunit proteolytic complex, is the central enzyme of nonlysosomal protein degradation in both the cytosol and nucleus. It is composed of 28 subunits arranged as four homoheptameric rings that stack on top of one another forming an elongated alpha-beta-beta-alpha cylinder with a central cavity. The proteasome alpha and beta subunits are members of the N-terminal nucleophile (Ntn)-hydrolase superfamily. Their N-terminal threonine residues are exposed as a nucleophile in peptide bond hydrolysis. Mammals have 7 alpha and 7 beta proteasome subunits while archaea have one of each.
Probab=100.00 E-value=1.2e-62 Score=403.62 Aligned_cols=217 Identities=77% Similarity=1.185 Sum_probs=211.3
Q ss_pred CCCcceeeCCCCcchhhhhHHHHhccCCcEEEEEeCCEEEEEEeecCCCCcccCCccceEEEecCcEEEEEecChhhHHH
Q 027541 6 YSFSLTTFSPSGKLVQIEHALTAVGSGQTSLGIKASNGVVIATEKKLPSILVDESSVHKIQSLTPNIGVVYSGMGPDFRV 85 (222)
Q Consensus 6 ~d~~~~~f~p~G~l~q~eya~~a~~~G~t~vgi~~~dgvvla~d~~~~~~l~~~~~~~KI~~i~~~i~~~~sG~~~D~~~ 85 (222)
||+++|+|||||||+|||||++|+++|+|+|||+++||||||+|++.+++++.+++.+||++|++|++|+++|..+|++.
T Consensus 1 yd~~~t~fsp~Grl~QveyA~~av~~G~t~igik~~dgVvlaad~~~~~~l~~~~~~~KI~~I~~~i~~~~sG~~~D~~~ 80 (227)
T cd03750 1 YSFSLTTFSPSGKLVQIEYALAAVSSGAPSVGIKAANGVVLATEKKVPSPLIDESSVHKVEQITPHIGMVYSGMGPDFRV 80 (227)
T ss_pred CCCCCceECCCCeEhHHHHHHHHHHcCCCEEEEEeCCEEEEEEeecCCccccCCCCcceEEEEcCCEEEEEeEcHHhHHH
Confidence 89999999999999999999999999999999999999999999999988888889999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHhhcCceeeeeEeEEEEEEeCCCCeEEEECCCCceEeeeeEEecC
Q 027541 86 LVRKSRKQAEQYHRLYKEPIPVTQLVRETAAVMQEFTQSGGVRPFGVSLLVAGYDDKGPQLYQVDPSGSYFSWKASAMGK 165 (222)
Q Consensus 86 l~~~~~~~~~~~~~~~~~~i~~~~la~~l~~~~~~~~~~~~~rP~~~~~il~G~d~~g~~L~~id~~G~~~~~~~~a~G~ 165 (222)
+.++++.+++.|++.++++++++.++++|++.+|.++++++.|||++++||+|||+.||+||++||+|++.+++++|+|+
T Consensus 81 l~~~~r~~~~~~~~~~~~~~~v~~la~~l~~~~~~~t~~~~~rP~~v~~li~G~D~~g~~Ly~~d~~G~~~~~~~~a~G~ 160 (227)
T cd03750 81 LVKKARKIAQQYYLVYGEPIPVSQLVREIASVMQEYTQSGGVRPFGVSLLIAGWDEGGPYLYQVDPSGSYFTWKATAIGK 160 (227)
T ss_pred HHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHhcCCCCCCChheEEEEEEEeCCCCEEEEECCCCCEEeeeEEEECC
Confidence 99999999999999999999999999999999999999999999999999999998899999999999999999999999
Q ss_pred CcHHHHHHHHHhccCCCCHHHHHHHHHHHHHhhhccCCCCCcEEEEEEeeCCceEEC
Q 027541 166 NVSNAKTFLEKRYVEEMELDDAVHTAILTLKEGFEGQISEKNIEIGIIGEKKEFRQY 222 (222)
Q Consensus 166 gs~~~~~~L~~~~~~~~~~~ea~~l~~~~L~~~~~~d~~~~~iei~ii~~~~~~~~~ 222 (222)
|+++++++|+++|+++|+++||++++++||+.+.+|++++.++||++++++++|+++
T Consensus 161 g~~~~~~~Le~~~~~~ms~eeai~l~~~~l~~~~~~~l~~~~iev~iv~~~~~~~~~ 217 (227)
T cd03750 161 NYSNAKTFLEKRYNEDLELEDAIHTAILTLKEGFEGQMTEKNIEIGICGETKGFRLL 217 (227)
T ss_pred CCHHHHHHHHhhccCCCCHHHHHHHHHHHHHHHhcccCCCCcEEEEEEECCCCEEEC
Confidence 999999999999999999999999999999999998899999999999988778764
No 2
>PRK03996 proteasome subunit alpha; Provisional
Probab=100.00 E-value=7.1e-61 Score=396.47 Aligned_cols=220 Identities=40% Similarity=0.713 Sum_probs=212.9
Q ss_pred CCCCCCcceeeCCCCcchhhhhHHHHhccCCcEEEEEeCCEEEEEEeecCCCCcccCCccceEEEecCcEEEEEecChhh
Q 027541 3 DSQYSFSLTTFSPSGKLVQIEHALTAVGSGQTSLGIKASNGVVIATEKKLPSILVDESSVHKIQSLTPNIGVVYSGMGPD 82 (222)
Q Consensus 3 ~~~~d~~~~~f~p~G~l~q~eya~~a~~~G~t~vgi~~~dgvvla~d~~~~~~l~~~~~~~KI~~i~~~i~~~~sG~~~D 82 (222)
.++||+++++|||||||+|+|||.||+++|+|+|||+++||||||+|++.++.++.+++.+||++|++|++|++||..+|
T Consensus 7 ~~~y~~~~~~fsp~Gr~~Q~eya~~av~~G~t~igik~~dgVvlaad~r~~~~~~~~~~~~KI~~I~~~i~~~~sG~~~D 86 (241)
T PRK03996 7 QMGYDRAITIFSPDGRLYQVEYAREAVKRGTTAVGVKTKDGVVLAVDKRITSPLIEPSSIEKIFKIDDHIGAASAGLVAD 86 (241)
T ss_pred ccccCCCCceECCCCeEhHHHHHHHHHHhCCCEEEEEeCCEEEEEEeccCCCcccCCCccceEEEEcCCEEEEEcccHHH
Confidence 68999999999999999999999999999999999999999999999999988877889999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHhhcCceeeeeEeEEEEEEeCCCCeEEEECCCCceEeeeeEE
Q 027541 83 FRVLVRKSRKQAEQYHRLYKEPIPVTQLVRETAAVMQEFTQSGGVRPFGVSLLVAGYDDKGPQLYQVDPSGSYFSWKASA 162 (222)
Q Consensus 83 ~~~l~~~~~~~~~~~~~~~~~~i~~~~la~~l~~~~~~~~~~~~~rP~~~~~il~G~d~~g~~L~~id~~G~~~~~~~~a 162 (222)
++.+.++++.++..|++.++++++++.+++++++.+|.|+++++.|||++++||||||+.||+||.+||.|++.+++++|
T Consensus 87 ~~~l~~~~~~~~~~~~~~~~~~i~~~~la~~ls~~~~~~~~~~~~rP~~~~~ilaG~d~~gp~Ly~id~~G~~~~~~~~a 166 (241)
T PRK03996 87 ARVLIDRARVEAQINRLTYGEPIGVETLTKKICDHKQQYTQHGGVRPFGVALLIAGVDDGGPRLFETDPSGAYLEYKATA 166 (241)
T ss_pred HHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHhcCCCCccchheEEEEEEEeCCcCEEEEECCCCCeecceEEE
Confidence 99999999999999999999999999999999999999999999999999999999999899999999999999999999
Q ss_pred ecCCcHHHHHHHHHhccCCCCHHHHHHHHHHHHHhhhccCCCCCcEEEEEEeeCCc-eEEC
Q 027541 163 MGKNVSNAKTFLEKRYVEEMELDDAVHTAILTLKEGFEGQISEKNIEIGIIGEKKE-FRQY 222 (222)
Q Consensus 163 ~G~gs~~~~~~L~~~~~~~~~~~ea~~l~~~~L~~~~~~d~~~~~iei~ii~~~~~-~~~~ 222 (222)
+|.+++.++++|++.|+++|+++||++++.+||+.+.+++.++.+++|++++++|+ |+.+
T Consensus 167 ~G~g~~~~~~~Le~~~~~~~s~eeai~l~~~al~~~~~~~~~~~~i~i~ii~~~~~~~~~~ 227 (241)
T PRK03996 167 IGAGRDTVMEFLEKNYKEDLSLEEAIELALKALAKANEGKLDPENVEIAYIDVETKKFRKL 227 (241)
T ss_pred ECCCcHHHHHHHHHhcccCCCHHHHHHHHHHHHHHHhccCCCCCcEEEEEEECCCCcEEEC
Confidence 99999999999999999999999999999999999988777999999999999875 7764
No 3
>cd03751 proteasome_alpha_type_3 proteasome_alpha_type_3. The 20S proteasome, multisubunit proteolytic complex, is the central enzyme of nonlysosomal protein degradation in both the cytosol and nucleus. It is composed of 28 subunits arranged as four homoheptameric rings that stack on top of one another forming an elongated alpha-beta-beta-alpha cylinder with a central cavity. The proteasome alpha and beta subunits are members of the N-terminal nucleophile (Ntn)-hydrolase superfamily. Their N-terminal threonine residues are exposed as a nucleophile in peptide bond hydrolysis. Mammals have 7 alpha and 7 beta proteasome subunits while archaea have one of each.
Probab=100.00 E-value=1.3e-60 Score=387.32 Aligned_cols=211 Identities=36% Similarity=0.572 Sum_probs=204.1
Q ss_pred CCCCCCcceeeCCCCcchhhhhHHHHhccCCcEEEEEeCCEEEEEEeecCCCCcccCCccceEEEecCcEEEEEecChhh
Q 027541 3 DSQYSFSLTTFSPSGKLVQIEHALTAVGSGQTSLGIKASNGVVIATEKKLPSILVDESSVHKIQSLTPNIGVVYSGMGPD 82 (222)
Q Consensus 3 ~~~~d~~~~~f~p~G~l~q~eya~~a~~~G~t~vgi~~~dgvvla~d~~~~~~l~~~~~~~KI~~i~~~i~~~~sG~~~D 82 (222)
+++||+++|+|||||||+|+|||++|+++|+|+|||+++||||||+|++.++.++..++.+|||+|++|++++++|..+|
T Consensus 1 ~~~yd~~~t~fsp~Grl~Qveya~~a~~~G~tvIgik~kdgVvla~d~r~~~~~~~~~~~~KI~~I~~~i~~~~sG~~~D 80 (212)
T cd03751 1 GTGYDLSASTFSPDGRVFQVEYANKAVENSGTAIGIRCKDGVVLAVEKLVTSKLYEPGSNKRIFNVDRHIGIAVAGLLAD 80 (212)
T ss_pred CCCccCCCceECCCCcchHHHHHHHHHhcCCCEEEEEeCCEEEEEEEccccccccCcchhcceeEecCcEEEEEEEChHh
Confidence 37899999999999999999999999999999999999999999999999888777788999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHhhcCceeeeeEeEEEEEEeCCCCeEEEECCCCceEeeeeEE
Q 027541 83 FRVLVRKSRKQAEQYHRLYKEPIPVTQLVRETAAVMQEFTQSGGVRPFGVSLLVAGYDDKGPQLYQVDPSGSYFSWKASA 162 (222)
Q Consensus 83 ~~~l~~~~~~~~~~~~~~~~~~i~~~~la~~l~~~~~~~~~~~~~rP~~~~~il~G~d~~g~~L~~id~~G~~~~~~~~a 162 (222)
++.+.++++.+++.|+..++++++++.++++|++++|.|++++++|||+|++|++|||++||+||++||+|++.+++++|
T Consensus 81 ~~~l~~~~r~~~~~y~~~~~~~~~v~~la~~ls~~~~~~t~~~~~rP~~vs~li~G~D~~gp~Ly~~D~~Gs~~~~~~~a 160 (212)
T cd03751 81 GRHLVSRAREEAENYRDNYGTPIPVKVLADRVAMYMHAYTLYSSVRPFGCSVLLGGYDSDGPQLYMIEPSGVSYGYFGCA 160 (212)
T ss_pred HHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHhccCCCcCCceEEEEEEEEeCCcCEEEEECCCCCEEeeEEEE
Confidence 99999999999999999999999999999999999999999999999999999999998899999999999999999999
Q ss_pred ecCCcHHHHHHHHHhccCCCCHHHHHHHHHHHHHhhhccC-CCCCcEEEEEE
Q 027541 163 MGKNVSNAKTFLEKRYVEEMELDDAVHTAILTLKEGFEGQ-ISEKNIEIGII 213 (222)
Q Consensus 163 ~G~gs~~~~~~L~~~~~~~~~~~ea~~l~~~~L~~~~~~d-~~~~~iei~ii 213 (222)
+|+++++++++||+.|+++||++||+++++++|+.+.+.+ ..+.++||.++
T Consensus 161 ~G~g~~~a~~~Lek~~~~dms~eeai~l~~~~L~~~~~~~~~~~~~iei~~~ 212 (212)
T cd03751 161 IGKGKQAAKTELEKLKFSELTCREAVKEAAKIIYIVHDEIKDKAFELELSWV 212 (212)
T ss_pred ECCCCHHHHHHHHHhccCCCCHHHHHHHHHHHHHHHhhccCCCCccEEEEEC
Confidence 9999999999999999999999999999999999999865 78999999875
No 4
>PTZ00246 proteasome subunit alpha; Provisional
Probab=100.00 E-value=3e-60 Score=395.22 Aligned_cols=221 Identities=36% Similarity=0.622 Sum_probs=210.1
Q ss_pred CCCCCCCcceeeCCCCcchhhhhHHHHhccCCcEEEEEeCCEEEEEEeecCCCCcccC-CccceEEEecCcEEEEEecCh
Q 027541 2 GDSQYSFSLTTFSPSGKLVQIEHALTAVGSGQTSLGIKASNGVVIATEKKLPSILVDE-SSVHKIQSLTPNIGVVYSGMG 80 (222)
Q Consensus 2 ~~~~~d~~~~~f~p~G~l~q~eya~~a~~~G~t~vgi~~~dgvvla~d~~~~~~l~~~-~~~~KI~~i~~~i~~~~sG~~ 80 (222)
|.++||+++|+|||||||+|||||+||+++|+|+|||+++||||||+|++.+++++.+ ++.+|||+|+++++++++|..
T Consensus 1 ~~~~yd~~~~~fsp~Grl~QvEYA~~av~~g~t~Igik~~dgVvlaad~r~s~~~~~~~~~~~KI~~I~~~i~~~~sG~~ 80 (253)
T PTZ00246 1 MSRRYDSRTTTFSPEGRLYQVEYALEAINNASLTVGILCKEGVILGADKPISSKLLDPGKINEKIYKIDSHIFCAVAGLT 80 (253)
T ss_pred CCCccCCCCceECCCCEEhHHHHHHHHHHhCCCEEEEEECCEEEEEEecCCCCcCccCCCCcccEEEecCCEEEEEEEcH
Confidence 5679999999999999999999999999999999999999999999999999866554 478999999999999999999
Q ss_pred hhHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHhhcCceeeeeEeEEEEEEeC-CCCeEEEECCCCceEeee
Q 027541 81 PDFRVLVRKSRKQAEQYHRLYKEPIPVTQLVRETAAVMQEFTQSGGVRPFGVSLLVAGYDD-KGPQLYQVDPSGSYFSWK 159 (222)
Q Consensus 81 ~D~~~l~~~~~~~~~~~~~~~~~~i~~~~la~~l~~~~~~~~~~~~~rP~~~~~il~G~d~-~g~~L~~id~~G~~~~~~ 159 (222)
+|++.+.+.++.++..|++.++.+++++.+++.++..+|.|+++++.|||+|++||||||+ .||+||.+||.|++.+++
T Consensus 81 ~D~~~l~~~~r~~~~~~~~~~~~~~~v~~l~~~l~~~~q~~~~~~~~rP~~v~~li~G~D~~~gp~Ly~~D~~Gs~~~~~ 160 (253)
T PTZ00246 81 ADANILINQCRLYAQRYRYTYGEPQPVEQLVVQICDLKQSYTQFGGLRPFGVSFLFAGYDENLGYQLYHTDPSGNYSGWK 160 (253)
T ss_pred HHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHhccccCcccCCEEEEEEEEeCCCCcEEEEECCCCCEecce
Confidence 9999999999999999999999999999999999999999999999999999999999995 789999999999999999
Q ss_pred eEEecCCcHHHHHHHHHhccCCCCHHHHHHHHHHHHHhhhccC-CCCCcEEEEEEeeCC-----ceEEC
Q 027541 160 ASAMGKNVSNAKTFLEKRYVEEMELDDAVHTAILTLKEGFEGQ-ISEKNIEIGIIGEKK-----EFRQY 222 (222)
Q Consensus 160 ~~a~G~gs~~~~~~L~~~~~~~~~~~ea~~l~~~~L~~~~~~d-~~~~~iei~ii~~~~-----~~~~~ 222 (222)
++|+|.++++++++|++.|+++|+++||++++++||+.+..++ .++.+++|++|+++| .|++|
T Consensus 161 ~~a~G~gs~~~~~~Le~~~~~~ms~eeai~l~~~al~~~~~~d~~s~~~vev~ii~~~~~~~~~~~~~l 229 (253)
T PTZ00246 161 ATAIGQNNQTAQSILKQEWKEDLTLEQGLLLAAKVLTKSMDSTSPKADKIEVGILSHGETDGEPIQKML 229 (253)
T ss_pred EEEECCCcHHHHHHHHHhccCCCCHHHHHHHHHHHHHHHHhccCCCCCcEEEEEEecCCcCCCCCeEEC
Confidence 9999999999999999999999999999999999999999988 589999999999875 27764
No 5
>TIGR03633 arc_protsome_A proteasome endopeptidase complex, archaeal, alpha subunit. This protein family describes the archaeal proteasome alpha subunit, homologous to both the beta subunit and to the alpha and beta subunits of eukaryotic proteasome subunits. This family is universal in the first 29 complete archaeal genomes but occasionally is duplicated.
Probab=100.00 E-value=4.1e-60 Score=388.02 Aligned_cols=218 Identities=41% Similarity=0.713 Sum_probs=210.0
Q ss_pred CCCCcceeeCCCCcchhhhhHHHHhccCCcEEEEEeCCEEEEEEeecCCCCcccCCccceEEEecCcEEEEEecChhhHH
Q 027541 5 QYSFSLTTFSPSGKLVQIEHALTAVGSGQTSLGIKASNGVVIATEKKLPSILVDESSVHKIQSLTPNIGVVYSGMGPDFR 84 (222)
Q Consensus 5 ~~d~~~~~f~p~G~l~q~eya~~a~~~G~t~vgi~~~dgvvla~d~~~~~~l~~~~~~~KI~~i~~~i~~~~sG~~~D~~ 84 (222)
+||+++|+|||||||+|+|||.+|+++|+|+|||+++||||||+|++.+++++.+++.+||++|+++++|++||..+|++
T Consensus 2 ~~~~~~~~f~p~Grl~Qieya~~av~~G~tvigi~~~dgvvlaad~r~~~~~~~~~~~~KI~~i~~~i~~~~sG~~~D~~ 81 (224)
T TIGR03633 2 GYDRAITVFSPDGRLYQVEYAREAVKRGTTAVGIKTKDGVVLAVDKRITSKLVEPSSIEKIFKIDDHIGAATSGLVADAR 81 (224)
T ss_pred CCCCCCceECCCCeEeHHHHHHHHHHcCCCEEEEEECCEEEEEEeccCCccccCCCccceEEEECCCEEEEEeecHHhHH
Confidence 79999999999999999999999999999999999999999999999988777778999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHhhcCceeeeeEeEEEEEEeCCCCeEEEECCCCceEeeeeEEec
Q 027541 85 VLVRKSRKQAEQYHRLYKEPIPVTQLVRETAAVMQEFTQSGGVRPFGVSLLVAGYDDKGPQLYQVDPSGSYFSWKASAMG 164 (222)
Q Consensus 85 ~l~~~~~~~~~~~~~~~~~~i~~~~la~~l~~~~~~~~~~~~~rP~~~~~il~G~d~~g~~L~~id~~G~~~~~~~~a~G 164 (222)
.+.+.++.++..|++.++++++++.+++++++.+|.+++.++.|||+|++||||+|+.||+||.+||.|++.+++++|+|
T Consensus 82 ~l~~~~~~~~~~~~~~~~~~~~~~~la~~ls~~l~~~~~~~~~rP~~v~~ll~G~d~~~~~Ly~~D~~G~~~~~~~~a~G 161 (224)
T TIGR03633 82 VLIDRARIEAQINRLTYGEPIDVETLAKKICDLKQQYTQHGGVRPFGVALLIAGVDDGGPRLFETDPSGALLEYKATAIG 161 (224)
T ss_pred HHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHhcCCCCccccceEEEEEEEeCCcCEEEEECCCCCeecceEEEEC
Confidence 99999999999999999999999999999999999999999999999999999999889999999999999999999999
Q ss_pred CCcHHHHHHHHHhccCCCCHHHHHHHHHHHHHhhhccCCCCCcEEEEEEeeCCc-eEEC
Q 027541 165 KNVSNAKTFLEKRYVEEMELDDAVHTAILTLKEGFEGQISEKNIEIGIIGEKKE-FRQY 222 (222)
Q Consensus 165 ~gs~~~~~~L~~~~~~~~~~~ea~~l~~~~L~~~~~~d~~~~~iei~ii~~~~~-~~~~ 222 (222)
.++++++++|++.|+++|+++||++++++||+.+.++..++.+++|++|+++|+ |+.+
T Consensus 162 ~g~~~~~~~L~~~~~~~~~~eeai~l~~~al~~~~~d~~~~~~i~i~ii~~~g~~~~~~ 220 (224)
T TIGR03633 162 AGRQAVTEFLEKEYREDLSLDEAIELALKALYSAVEDKLTPENVEVAYITVEDKKFRKL 220 (224)
T ss_pred CCCHHHHHHHHHhccCCCCHHHHHHHHHHHHHHHhcccCCCCcEEEEEEEcCCCcEEEC
Confidence 999999999999999999999999999999999888336999999999999886 8764
No 6
>KOG0176 consensus 20S proteasome, regulatory subunit alpha type PSMA5/PUP2 [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1.9e-61 Score=371.25 Aligned_cols=220 Identities=37% Similarity=0.664 Sum_probs=213.1
Q ss_pred CCCCCCcceeeCCCCcchhhhhHHHHhccCCcEEEEEeCCEEEEEEeecCCCCcccCCccceEEEecCcEEEEEecChhh
Q 027541 3 DSQYSFSLTTFSPSGKLVQIEHALTAVGSGQTSLGIKASNGVVIATEKKLPSILVDESSVHKIQSLTPNIGVVYSGMGPD 82 (222)
Q Consensus 3 ~~~~d~~~~~f~p~G~l~q~eya~~a~~~G~t~vgi~~~dgvvla~d~~~~~~l~~~~~~~KI~~i~~~i~~~~sG~~~D 82 (222)
++.||+.+++|||||||+|||||.+|++.|+|.|||+.++|||||+++|.+++|+.+++..||++||+||+|++||+.+|
T Consensus 5 rseydrgVNTfSpEGRlfQVEYaieAikLGsTaIGv~TkEgVvL~vEKritSpLm~p~sveKi~eid~HIgca~SGl~aD 84 (241)
T KOG0176|consen 5 RSEYDRGVNTFSPEGRLFQVEYAIEAIKLGSTAIGVKTKEGVVLAVEKRITSPLMEPSSVEKIVEIDDHIGCAMSGLIAD 84 (241)
T ss_pred HHHhcccccccCCCceeeehhhHHHHHhcCCceeeeeccceEEEEEeccccCcccCchhhhhheehhhceeeeccccccc
Confidence 89999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHhhcCc-----eeeeeEeEEEEEEeCCCCeEEEECCCCceEe
Q 027541 83 FRVLVRKSRKQAEQYHRLYKEPIPVTQLVRETAAVMQEFTQSGG-----VRPFGVSLLVAGYDDKGPQLYQVDPSGSYFS 157 (222)
Q Consensus 83 ~~~l~~~~~~~~~~~~~~~~~~i~~~~la~~l~~~~~~~~~~~~-----~rP~~~~~il~G~d~~g~~L~~id~~G~~~~ 157 (222)
++.++++.|.++++|++.|+++|+++.+.+.+|++...+....+ .|||||++|+||+|++||+||..||+|++++
T Consensus 85 arTlve~arv~~qnh~f~Y~e~i~VEs~tq~v~~LaLrFGe~~~~~~~msRPFGValliAG~D~~gpqL~h~dPSGtf~~ 164 (241)
T KOG0176|consen 85 ARTLVERARVETQNHWFTYGEPISVESLTQAVSDLALRFGEGDDEEAIMSRPFGVALLIAGHDETGPQLYHLDPSGTFIR 164 (241)
T ss_pred hHHHHHHHHHHhhhceeecCCcccHHHHHHHHHHHHhHhCCCcchhhhhcCCcceEEEEeeccCCCceEEEeCCCCceEE
Confidence 99999999999999999999999999999999999877754422 4999999999999999999999999999999
Q ss_pred eeeEEecCCcHHHHHHHHHhccCCCCHHHHHHHHHHHHHhhhccCCCCCcEEEEEEeeCCceEEC
Q 027541 158 WKASAMGKNVSNAKTFLEKRYVEEMELDDAVHTAILTLKEGFEGQISEKNIEIGIIGEKKEFRQY 222 (222)
Q Consensus 158 ~~~~a~G~gs~~~~~~L~~~~~~~~~~~ea~~l~~~~L~~~~~~d~~~~~iei~ii~~~~~~~~~ 222 (222)
+++-|+|+|++-|...|++.|.++|+++||+.++...|+.+++..++.+|+|+.++++++.|++|
T Consensus 165 ~~AKAIGSgsEga~~~L~~e~~~~ltL~ea~~~~L~iLkqVMeeKl~~~Nvev~~vt~e~~f~~~ 229 (241)
T KOG0176|consen 165 YKAKAIGSGSEGAESSLQEEYHKDLTLKEAEKIVLKILKQVMEEKLNSNNVEVAVVTPEGEFHIY 229 (241)
T ss_pred ecceeccccchHHHHHHHHHHhhcccHHHHHHHHHHHHHHHHHHhcCccceEEEEEcccCceEec
Confidence 99999999999999999999999999999999999999999999899999999999999999985
No 7
>cd03752 proteasome_alpha_type_4 proteasome_alpha_type_4. The 20S proteasome, multisubunit proteolytic complex, is the central enzyme of nonlysosomal protein degradation in both the cytosol and nucleus. It is composed of 28 subunits arranged as four homoheptameric rings that stack on top of one another forming an elongated alpha-beta-beta-alpha cylinder with a central cavity. The proteasome alpha and beta subunits are members of the N-terminal nucleophile (Ntn)-hydrolase superfamily. Their N-terminal threonine residues are exposed as a nucleophile in peptide bond hydrolysis. Mammals have 7 alpha and 7 beta proteasome subunits while archaea have one of each.
Probab=100.00 E-value=6.2e-60 Score=384.12 Aligned_cols=210 Identities=40% Similarity=0.691 Sum_probs=202.4
Q ss_pred CCCCCcceeeCCCCcchhhhhHHHHhccCCcEEEEEeCCEEEEEEeecCCCCcccC-CccceEEEecCcEEEEEecChhh
Q 027541 4 SQYSFSLTTFSPSGKLVQIEHALTAVGSGQTSLGIKASNGVVIATEKKLPSILVDE-SSVHKIQSLTPNIGVVYSGMGPD 82 (222)
Q Consensus 4 ~~~d~~~~~f~p~G~l~q~eya~~a~~~G~t~vgi~~~dgvvla~d~~~~~~l~~~-~~~~KI~~i~~~i~~~~sG~~~D 82 (222)
++||+++|+|||||||+|+|||.||+++|+|+|||+++||||||+|++.+++++.. ++.+||++|++|++|++||..+|
T Consensus 1 ~~yd~~~~~fsp~Grl~Qveya~~a~~~G~t~igi~~~dgVvla~d~r~~~~~~~~~~~~~KI~~I~~~i~~~~sG~~~D 80 (213)
T cd03752 1 RRYDSRTTIFSPEGRLYQVEYAMEAISHAGTCLGILAKDGIVLAAEKKVTSKLLDQSFSSEKIYKIDDHIACAVAGITSD 80 (213)
T ss_pred CCcCCCCceECCCCEEhHHHhHHHHHhcCCCEEEEEeCCEEEEEEEeccCCcccCCCcCcceEEEecCCEEEEEecChHh
Confidence 58999999999999999999999999999999999999999999999999876554 59999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHhhcCceeeeeEeEEEEEEeC-CCCeEEEECCCCceEeeeeE
Q 027541 83 FRVLVRKSRKQAEQYHRLYKEPIPVTQLVRETAAVMQEFTQSGGVRPFGVSLLVAGYDD-KGPQLYQVDPSGSYFSWKAS 161 (222)
Q Consensus 83 ~~~l~~~~~~~~~~~~~~~~~~i~~~~la~~l~~~~~~~~~~~~~rP~~~~~il~G~d~-~g~~L~~id~~G~~~~~~~~ 161 (222)
++.+.++++.+++.|+++++++|+++.+++.|+..+|.|+++++.|||+|++|++|||+ .||+||.+||.|++.+++++
T Consensus 81 ~~~l~~~~r~~~~~~~~~~~~~i~v~~la~~ls~~~~~~t~~~~~RP~~v~~li~G~D~~~g~~ly~~d~~G~~~~~~~~ 160 (213)
T cd03752 81 ANILINYARLIAQRYLYSYQEPIPVEQLVQRLCDIKQGYTQYGGLRPFGVSFLYAGWDKHYGFQLYQSDPSGNYSGWKAT 160 (213)
T ss_pred HHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHhcCCCcccceeEEEEEEEeCCCCCEEEEECCCCCeeeeeEE
Confidence 99999999999999999999999999999999999999999999999999999999995 68999999999999999999
Q ss_pred EecCCcHHHHHHHHHhccCCCCHHHHHHHHHHHHHhhhccC-CCCCcEEEEEE
Q 027541 162 AMGKNVSNAKTFLEKRYVEEMELDDAVHTAILTLKEGFEGQ-ISEKNIEIGII 213 (222)
Q Consensus 162 a~G~gs~~~~~~L~~~~~~~~~~~ea~~l~~~~L~~~~~~d-~~~~~iei~ii 213 (222)
|+|+++.+++++||++|+++|+++||++++.+||+.+.+|+ .++.++||+++
T Consensus 161 a~G~gs~~~~~~Le~~y~~~ms~eea~~l~~~al~~~~~r~~~~~~~~ei~~~ 213 (213)
T cd03752 161 AIGNNNQAAQSLLKQDYKDDMTLEEALALAVKVLSKTMDSTKLTSEKLEFATL 213 (213)
T ss_pred EECCCcHHHHHHHHHhccCCCCHHHHHHHHHHHHHHHHhccCCCCCcEEEEEC
Confidence 99999999999999999999999999999999999999988 58999999875
No 8
>cd03756 proteasome_alpha_archeal proteasome_alpha_archeal. The 20S proteasome, multisubunit proteolytic complex, is the central enzyme of nonlysosomal protein degradation in both the cytosol and nucleus. It is composed of 28 subunits arranged as four homoheptameric rings that stack on top of one another forming an elongated alpha-beta-beta-alpha cylinder with a central cavity. The proteasome alpha and beta subunits are members of the N-terminal nucleophile (Ntn)-hydrolase superfamily. Their N-terminal threonine residues are exposed as a nucleophile in peptide bond hydrolysis. Mammals have 7 alpha and 7 beta proteasome subunits while archaea have one of each.
Probab=100.00 E-value=1.5e-59 Score=381.35 Aligned_cols=210 Identities=42% Similarity=0.714 Sum_probs=205.2
Q ss_pred CCCCcceeeCCCCcchhhhhHHHHhccCCcEEEEEeCCEEEEEEeecCCCCcccCCccceEEEecCcEEEEEecChhhHH
Q 027541 5 QYSFSLTTFSPSGKLVQIEHALTAVGSGQTSLGIKASNGVVIATEKKLPSILVDESSVHKIQSLTPNIGVVYSGMGPDFR 84 (222)
Q Consensus 5 ~~d~~~~~f~p~G~l~q~eya~~a~~~G~t~vgi~~~dgvvla~d~~~~~~l~~~~~~~KI~~i~~~i~~~~sG~~~D~~ 84 (222)
+||+++|+|||||||+|+|||.||+++|+|+||++++||||||+|++.++.++.+++.+||++|++++++++||..+|++
T Consensus 1 ~y~~~~~~fsp~G~l~Q~eya~~av~~G~t~igik~~dgvvla~d~~~~~~~~~~~~~~KI~~I~~~i~~~~sG~~~D~~ 80 (211)
T cd03756 1 GYDRAITVFSPDGRLYQVEYAREAVKRGTTALGIKCKEGVVLAVDKRITSKLVEPESIEKIYKIDDHVGAATSGLVADAR 80 (211)
T ss_pred CCCCCCceECCCCeEhHHHHHHHHHHcCCCEEEEEECCEEEEEEeccCCCcccCCCccceEEEEcCCEEEEEecCHHHHH
Confidence 69999999999999999999999999999999999999999999999988777788999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHhhcCceeeeeEeEEEEEEeCCCCeEEEECCCCceEeeeeEEec
Q 027541 85 VLVRKSRKQAEQYHRLYKEPIPVTQLVRETAAVMQEFTQSGGVRPFGVSLLVAGYDDKGPQLYQVDPSGSYFSWKASAMG 164 (222)
Q Consensus 85 ~l~~~~~~~~~~~~~~~~~~i~~~~la~~l~~~~~~~~~~~~~rP~~~~~il~G~d~~g~~L~~id~~G~~~~~~~~a~G 164 (222)
.+.+.++.+++.|+++++++++++.++++++..++.++++++.|||++++||+|||+.||+||.+||.|++.+++++|+|
T Consensus 81 ~l~~~l~~~~~~~~~~~~~~~~~~~la~~ls~~~~~~~~~~~~rP~~v~~ll~G~D~~~~~ly~vd~~G~~~~~~~~a~G 160 (211)
T cd03756 81 VLIDRARVEAQIHRLTYGEPIDVEVLVKKICDLKQQYTQHGGVRPFGVALLIAGVDDGGPRLFETDPSGAYNEYKATAIG 160 (211)
T ss_pred HHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHhcCCCCeechhEEEEEEEEeCCCCEEEEECCCCCeeeeEEEEEC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCcHHHHHHHHHhccCCCCHHHHHHHHHHHHHhhhccCCCCCcEEEEEEe
Q 027541 165 KNVSNAKTFLEKRYVEEMELDDAVHTAILTLKEGFEGQISEKNIEIGIIG 214 (222)
Q Consensus 165 ~gs~~~~~~L~~~~~~~~~~~ea~~l~~~~L~~~~~~d~~~~~iei~ii~ 214 (222)
+++++++++|++.|+|+|+++||++++++||+.+.+++.++.++||++|+
T Consensus 161 ~g~~~~~~~Le~~~~~~m~~~ea~~l~~~~l~~~~~~~~~~~~~~v~ii~ 210 (211)
T cd03756 161 SGRQAVTEFLEKEYKEDMSLEEAIELALKALYAALEENETPENVEIAYVT 210 (211)
T ss_pred CCCHHHHHHHHhhccCCCCHHHHHHHHHHHHHHHhcccCCCCcEEEEEEe
Confidence 99999999999999999999999999999999999988999999999986
No 9
>cd03755 proteasome_alpha_type_7 proteasome_alpha_type_7. The 20S proteasome, multisubunit proteolytic complex, is the central enzyme of nonlysosomal protein degradation in both the cytosol and nucleus. It is composed of 28 subunits arranged as four homoheptameric rings that stack on top of one another forming an elongated alpha-beta-beta-alpha cylinder with a central cavity. The proteasome alpha and beta subunits are members of the N-terminal nucleophile (Ntn)-hydrolase superfamily. Their N-terminal threonine residues are exposed as a nucleophile in peptide bond hydrolysis. Mammals have 7 alpha and 7 beta proteasome subunits while archaea have one of each.
Probab=100.00 E-value=3.4e-59 Score=378.21 Aligned_cols=206 Identities=41% Similarity=0.697 Sum_probs=199.7
Q ss_pred CCCcceeeCCCCcchhhhhHHHHhccCCcEEEEEeCCEEEEEEeecCCCCcccCCccceEEEecCcEEEEEecChhhHHH
Q 027541 6 YSFSLTTFSPSGKLVQIEHALTAVGSGQTSLGIKASNGVVIATEKKLPSILVDESSVHKIQSLTPNIGVVYSGMGPDFRV 85 (222)
Q Consensus 6 ~d~~~~~f~p~G~l~q~eya~~a~~~G~t~vgi~~~dgvvla~d~~~~~~l~~~~~~~KI~~i~~~i~~~~sG~~~D~~~ 85 (222)
||+++|+|||||||+|+|||++|+++|+|+|||+++||||||+|++....++.+++.+||++|++|++|++||..+|++.
T Consensus 1 ~d~~~~~fsp~Gr~~Qveya~~av~~G~t~Igik~~dgVvlaad~~~~~~~~~~~~~~KI~~I~~~i~~~~sG~~~D~~~ 80 (207)
T cd03755 1 YDRAITVFSPDGHLFQVEYAQEAVRKGTTAVGVRGKDCVVLGVEKKSVAKLQDPRTVRKICMLDDHVCLAFAGLTADARV 80 (207)
T ss_pred CCCCCceECCCCeEeHHHHHHHHHHcCCCEEEEEeCCEEEEEEecCCCCcccCCCccCcEEEECCCEEEEEecchhhHHH
Confidence 89999999999999999999999999999999999999999999998777777788999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHhhcCceeeeeEeEEEEEEeC-CCCeEEEECCCCceEeeeeEEec
Q 027541 86 LVRKSRKQAEQYHRLYKEPIPVTQLVRETAAVMQEFTQSGGVRPFGVSLLVAGYDD-KGPQLYQVDPSGSYFSWKASAMG 164 (222)
Q Consensus 86 l~~~~~~~~~~~~~~~~~~i~~~~la~~l~~~~~~~~~~~~~rP~~~~~il~G~d~-~g~~L~~id~~G~~~~~~~~a~G 164 (222)
+.++++.+++.|++.++++|+++.+++++++++|+|+++++.|||++++||+|||+ .||+||.+||+|++.+++++|+|
T Consensus 81 l~~~~r~~~~~~~~~~~~~i~~~~la~~ls~~~~~y~~~~~~rP~~vs~ii~G~D~~~~p~Ly~iD~~G~~~~~~~~a~G 160 (207)
T cd03755 81 LINRARLECQSHRLTVEDPVTVEYITRYIAGLQQRYTQSGGVRPFGISTLIVGFDPDGTPRLYQTDPSGTYSAWKANAIG 160 (207)
T ss_pred HHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHhcccCcccceeEEEEEEEeCCCCeEEEEECCCcCEEcceEEEEC
Confidence 99999999999999999999999999999999999999999999999999999997 58999999999999999999999
Q ss_pred CCcHHHHHHHHHhccCCCCHHHHHHHHHHHHHhhhccCCCCCcEEEEEE
Q 027541 165 KNVSNAKTFLEKRYVEEMELDDAVHTAILTLKEGFEGQISEKNIEIGII 213 (222)
Q Consensus 165 ~gs~~~~~~L~~~~~~~~~~~ea~~l~~~~L~~~~~~d~~~~~iei~ii 213 (222)
++++.++++||+.|+++|+++||++++++||+++.+ .++.++||+++
T Consensus 161 ~gs~~~~~~Le~~~~~~ms~eeai~l~~~~l~~~~~--~~~~~~e~~~~ 207 (207)
T cd03755 161 RNSKTVREFLEKNYKEEMTRDDTIKLAIKALLEVVQ--SGSKNIELAVM 207 (207)
T ss_pred CCCHHHHHHHHhhccCCCCHHHHHHHHHHHHHHHhC--CCCCeEEEEEC
Confidence 999999999999999999999999999999999987 78999999985
No 10
>cd03749 proteasome_alpha_type_1 proteasome_alpha_type_1. The 20S proteasome, multisubunit proteolytic complex, is the central enzyme of nonlysosomal protein degradation in both the cytosol and nucleus. It is composed of 28 subunits arranged as four homoheptameric rings that stack on top of one another forming an elongated alpha-beta-beta-alpha cylinder with a central cavity. The proteasome alpha and beta subunits are members of the N-terminal nucleophile (Ntn)-hydrolase superfamily. Their N-terminal threonine residues are exposed as a nucleophile in peptide bond hydrolysis. Mammals have 7 alpha and 7 beta proteasome subunits while archaea have one of each.
Probab=100.00 E-value=6.2e-59 Score=377.63 Aligned_cols=207 Identities=39% Similarity=0.699 Sum_probs=199.2
Q ss_pred CCCcceeeCCCCcchhhhhHHHHhccCCcEEEEEeCCEEEEEEeecCCCCcccCCccceEEEecCcEEEEEecChhhHHH
Q 027541 6 YSFSLTTFSPSGKLVQIEHALTAVGSGQTSLGIKASNGVVIATEKKLPSILVDESSVHKIQSLTPNIGVVYSGMGPDFRV 85 (222)
Q Consensus 6 ~d~~~~~f~p~G~l~q~eya~~a~~~G~t~vgi~~~dgvvla~d~~~~~~l~~~~~~~KI~~i~~~i~~~~sG~~~D~~~ 85 (222)
||+++|+|||||||+|+|||++|+++|+|+|||+++||||||+|++.++.+ .++.+||++|+++++|++||..+|++.
T Consensus 1 yd~~~t~fsp~Grl~Qveya~~av~~G~t~IgIk~~dgVvlaad~r~~~~l--~~~~~KI~~I~~~i~~~~sG~~~D~~~ 78 (211)
T cd03749 1 YDTDVTTWSPQGRLFQVEYAMEAVKQGSATVGLKSKTHAVLVALKRATSEL--SSYQKKIFKVDDHIGIAIAGLTADARV 78 (211)
T ss_pred CCCCCceECCCCeEeHHHHHHHHHhcCCCEEEEEeCCEEEEEEeccCcccc--CCccccEEEeCCCEEEEEEeChHhHHH
Confidence 899999999999999999999999999999999999999999999987765 346699999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHhhcCceeeeeEeEEEEEEeCCCCeEEEECCCCceEeeeeEEecC
Q 027541 86 LVRKSRKQAEQYHRLYKEPIPVTQLVRETAAVMQEFTQSGGVRPFGVSLLVAGYDDKGPQLYQVDPSGSYFSWKASAMGK 165 (222)
Q Consensus 86 l~~~~~~~~~~~~~~~~~~i~~~~la~~l~~~~~~~~~~~~~rP~~~~~il~G~d~~g~~L~~id~~G~~~~~~~~a~G~ 165 (222)
+.++++.+++.|+++++++++++.+++.++..+|.++++.+.|||+|++||+|||+.||+||++||+|++.+++++|+|+
T Consensus 79 l~~~~r~~~~~~~~~~~~~~~v~~la~~is~~~~~~t~~~~~rP~~v~~ii~G~D~~gp~Ly~~Dp~G~~~~~~~~a~G~ 158 (211)
T cd03749 79 LSRYMRQECLNYRFVYDSPIPVSRLVSKVAEKAQINTQRYGRRPYGVGLLIAGYDESGPHLFQTCPSGNYFEYKATSIGA 158 (211)
T ss_pred HHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHhcccCCCCceEEEEEEEEcCCCCeEEEECCCcCEeeeeEEEECC
Confidence 99999999999999999999999999999999999999989999999999999999899999999999999999999999
Q ss_pred CcHHHHHHHHHhcc--CCCCHHHHHHHHHHHHHhhhccC--CCCCcEEEEEEe
Q 027541 166 NVSNAKTFLEKRYV--EEMELDDAVHTAILTLKEGFEGQ--ISEKNIEIGIIG 214 (222)
Q Consensus 166 gs~~~~~~L~~~~~--~~~~~~ea~~l~~~~L~~~~~~d--~~~~~iei~ii~ 214 (222)
+++.++++||+.|+ ++|+++||+++++++|+.+++++ +++.++||++|+
T Consensus 159 g~~~a~~~Le~~~~~~~~ms~ee~i~~~~~~l~~~~~~~~~~~~~~iei~ii~ 211 (211)
T cd03749 159 RSQSARTYLERHFEEFEDCSLEELIKHALRALRETLPGEQELTIKNVSIAIVG 211 (211)
T ss_pred CcHHHHHHHHHhhccccCCCHHHHHHHHHHHHHHHhccCCCCCCCcEEEEEEC
Confidence 99999999999998 59999999999999999999976 899999999984
No 11
>cd03754 proteasome_alpha_type_6 proteasome_alpha_type_6. The 20S proteasome, multisubunit proteolytic complex, is the central enzyme of nonlysosomal protein degradation in both the cytosol and nucleus. It is composed of 28 subunits arranged as four homoheptameric rings that stack on top of one another forming an elongated alpha-beta-beta-alpha cylinder with a central cavity. The proteasome alpha and beta subunits are members of the N-terminal nucleophile (Ntn)-hydrolase superfamily. Their N-terminal threonine residues are exposed as a nucleophile in peptide bond hydrolysis. Mammals have 7 alpha and 7 beta proteasome subunits while archaea have one of each.
Probab=100.00 E-value=6e-59 Score=378.60 Aligned_cols=209 Identities=35% Similarity=0.610 Sum_probs=201.3
Q ss_pred CCCCcceeeCCCCcchhhhhHHHHhcc-CCcEEEEEeCCEEEEEEeecCCCCcccCCccceEEEecCcEEEEEecChhhH
Q 027541 5 QYSFSLTTFSPSGKLVQIEHALTAVGS-GQTSLGIKASNGVVIATEKKLPSILVDESSVHKIQSLTPNIGVVYSGMGPDF 83 (222)
Q Consensus 5 ~~d~~~~~f~p~G~l~q~eya~~a~~~-G~t~vgi~~~dgvvla~d~~~~~~l~~~~~~~KI~~i~~~i~~~~sG~~~D~ 83 (222)
+||+++|+|||||||+|+|||+||+++ |+|+|||+++||||||+|++.++.++.+++.+|||+|+++++|++||+.+|+
T Consensus 1 ~yd~~~~~fsp~Grl~Qveya~~a~~~~g~t~igi~~~d~Vvlaad~r~~~~~i~~~~~~Ki~~I~~~i~~~~sG~~~D~ 80 (215)
T cd03754 1 GFDRHITIFSPEGRLYQVEYAFKAVKNAGLTSVAVRGKDCAVVVTQKKVPDKLIDPSTVTHLFRITDEIGCVMTGMIADS 80 (215)
T ss_pred CCCCCCeeECCCCeEeHHHhHHHHHhcCCccEEEEEeCCEEEEEEeccccccccCCcccCceEEEcCCEEEEEEechhhH
Confidence 699999999999999999999999975 7899999999999999999998877777789999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHhhcCceeeeeEeEEEEEEeC-CCCeEEEECCCCceEeeeeEE
Q 027541 84 RVLVRKSRKQAEQYHRLYKEPIPVTQLVRETAAVMQEFTQSGGVRPFGVSLLVAGYDD-KGPQLYQVDPSGSYFSWKASA 162 (222)
Q Consensus 84 ~~l~~~~~~~~~~~~~~~~~~i~~~~la~~l~~~~~~~~~~~~~rP~~~~~il~G~d~-~g~~L~~id~~G~~~~~~~~a 162 (222)
+.+.++++.++..|+++++++|+++.+|+++++++|.|+++++.|||++++|+||||+ +||+||++||+|++.+++++|
T Consensus 81 ~~l~~~~r~~~~~~~~~~~~~i~v~~la~~ls~~~q~yt~~~~~RP~~v~~ii~G~D~~~gp~Ly~~Dp~Gs~~~~~~~a 160 (215)
T cd03754 81 RSQVQRARYEAAEFKYKYGYEMPVDVLAKRIADINQVYTQHAYMRPLGVSMILIGIDEELGPQLYKCDPAGYFAGYKATA 160 (215)
T ss_pred HHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHhCCCCCcCCeeEEEEEEEeCCCCeEEEEEcCCccEEeEEEEE
Confidence 9999999999999999999999999999999999999999999999999999999996 689999999999999999999
Q ss_pred ecCCcHHHHHHHHHhccCC--C--CHHHHHHHHHHHHHhhhccCCCCCcEEEEEE
Q 027541 163 MGKNVSNAKTFLEKRYVEE--M--ELDDAVHTAILTLKEGFEGQISEKNIEIGII 213 (222)
Q Consensus 163 ~G~gs~~~~~~L~~~~~~~--~--~~~ea~~l~~~~L~~~~~~d~~~~~iei~ii 213 (222)
+|++++.++++||+.|+++ | ++|||++++++||+++.+||+++.++||+|+
T Consensus 161 ~G~gs~~~~~~Le~~~~~~~~~~~s~eeai~l~~~al~~~~~rd~~~~~~ei~~~ 215 (215)
T cd03754 161 AGVKEQEATNFLEKKLKKKPDLIESYEETVELAISCLQTVLSTDFKATEIEVGVV 215 (215)
T ss_pred ECCCcHHHHHHHHHHhccccccCCCHHHHHHHHHHHHHHHhcccCCCCcEEEEEC
Confidence 9999999999999999995 7 9999999999999999999999999999985
No 12
>cd03753 proteasome_alpha_type_5 proteasome_alpha_type_5. The 20S proteasome, multisubunit proteolytic complex, is the central enzyme of nonlysosomal protein degradation in both the cytosol and nucleus. It is composed of 28 subunits arranged as four homoheptameric rings that stack on top of one another forming an elongated alpha-beta-beta-alpha cylinder with a central cavity. The proteasome alpha and beta subunits are members of the N-terminal nucleophile (Ntn)-hydrolase superfamily. Their N-terminal threonine residues are exposed as a nucleophile in peptide bond hydrolysis. Mammals have 7 alpha and 7 beta proteasome subunits while archaea have one of each.
Probab=100.00 E-value=2.6e-58 Score=374.69 Aligned_cols=208 Identities=37% Similarity=0.650 Sum_probs=200.2
Q ss_pred CCCcceeeCCCCcchhhhhHHHHhccCCcEEEEEeCCEEEEEEeecCCCCcccCCccceEEEecCcEEEEEecChhhHHH
Q 027541 6 YSFSLTTFSPSGKLVQIEHALTAVGSGQTSLGIKASNGVVIATEKKLPSILVDESSVHKIQSLTPNIGVVYSGMGPDFRV 85 (222)
Q Consensus 6 ~d~~~~~f~p~G~l~q~eya~~a~~~G~t~vgi~~~dgvvla~d~~~~~~l~~~~~~~KI~~i~~~i~~~~sG~~~D~~~ 85 (222)
||+++|+|||||||+|+|||.+|+++|+|+||++++||||+|+|++.+++++.+++.+||++|++|++|++||..+|++.
T Consensus 1 ~~~~~~~f~p~G~~~Q~eya~~a~~~G~t~igik~~dgVvlaad~r~~~~~~~~~~~~KI~~I~~~i~~~~sG~~~D~~~ 80 (213)
T cd03753 1 YDRGVNTFSPEGRLFQVEYAIEAIKLGSTAIGIKTKEGVVLAVEKRITSPLMEPSSVEKIMEIDDHIGCAMSGLIADART 80 (213)
T ss_pred CCCCCccCCCCCeEhHHHHHHHHHhcCCCEEEEEeCCEEEEEEecccCCcCcCCCccceEEEEcCCEEEEEecCHHHHHH
Confidence 89999999999999999999999999999999999999999999999887777788999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHhhc-----CceeeeeEeEEEEEEeCCCCeEEEECCCCceEeeee
Q 027541 86 LVRKSRKQAEQYHRLYKEPIPVTQLVRETAAVMQEFTQS-----GGVRPFGVSLLVAGYDDKGPQLYQVDPSGSYFSWKA 160 (222)
Q Consensus 86 l~~~~~~~~~~~~~~~~~~i~~~~la~~l~~~~~~~~~~-----~~~rP~~~~~il~G~d~~g~~L~~id~~G~~~~~~~ 160 (222)
+.+.++.+++.|+.+++++++++.+++++++.+|++++. +..|||+|++||||||+.||+||.+||.|++.++++
T Consensus 81 l~~~~r~~~~~~~~~~~~~i~~~~~~~~ls~~~~~~~~~~~~~~~~~rP~~v~~ii~G~D~~gp~Ly~vd~~G~~~~~~~ 160 (213)
T cd03753 81 LIDHARVEAQNHRFTYNEPMTVESVTQAVSDLALQFGEGDDGKKAMSRPFGVALLIAGVDENGPQLFHTDPSGTFTRCDA 160 (213)
T ss_pred HHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHhCcccccccccccceEEEEEEEEcCCCCEEEEECCCCCeecccE
Confidence 999999999999999999999999999999999998874 346999999999999999999999999999999999
Q ss_pred EEecCCcHHHHHHHHHhccCCCCHHHHHHHHHHHHHhhhccCCCCCcEEEEEE
Q 027541 161 SAMGKNVSNAKTFLEKRYVEEMELDDAVHTAILTLKEGFEGQISEKNIEIGII 213 (222)
Q Consensus 161 ~a~G~gs~~~~~~L~~~~~~~~~~~ea~~l~~~~L~~~~~~d~~~~~iei~ii 213 (222)
+|+|++++.++++|+++|+++|+++||++++++||+.+.++++++.++||+++
T Consensus 161 ~a~G~~~~~~~~~L~~~~~~~ls~eeai~l~~~~l~~~~~~~~~~~~~ei~~~ 213 (213)
T cd03753 161 KAIGSGSEGAQSSLQEKYHKDMTLEEAEKLALSILKQVMEEKLNSTNVELATV 213 (213)
T ss_pred EEECCCcHHHHHHHHhhccCCCCHHHHHHHHHHHHHHHhcccCCCCcEEEEEC
Confidence 99999999999999999999999999999999999998888889999999985
No 13
>cd01911 proteasome_alpha proteasome alpha subunit. The 20S proteasome, multisubunit proteolytic complex, is the central enzyme of nonlysosomal protein degradation in both the cytosol and nucleus. It is composed of 28 subunits arranged as four homoheptameric rings that stack on top of one another forming an elongated alpha-beta-beta-alpha cylinder with a central cavity. The proteasome alpha and beta subunits are members of the N-terminal nucleophile (Ntn)-hydrolase superfamily. Their N-terminal threonine residues are exposed as a nucleophile in peptide bond hydrolysis. Mammals have 7 different alpha and 10 different beta proteasome subunit genes while archaea have one of each.
Probab=100.00 E-value=7.1e-58 Score=371.11 Aligned_cols=208 Identities=53% Similarity=0.861 Sum_probs=202.2
Q ss_pred CCCcceeeCCCCcchhhhhHHHHhccCCcEEEEEeCCEEEEEEeecCCCCcccCCccceEEEecCcEEEEEecChhhHHH
Q 027541 6 YSFSLTTFSPSGKLVQIEHALTAVGSGQTSLGIKASNGVVIATEKKLPSILVDESSVHKIQSLTPNIGVVYSGMGPDFRV 85 (222)
Q Consensus 6 ~d~~~~~f~p~G~l~q~eya~~a~~~G~t~vgi~~~dgvvla~d~~~~~~l~~~~~~~KI~~i~~~i~~~~sG~~~D~~~ 85 (222)
||+++|+|||||||+|+|||++++++|+|+||++++||||+|+|++.+.+++..++.+||++|+++++++++|..+|++.
T Consensus 1 ~~~~~~~f~~~G~~~q~eya~~~~~~G~tvigi~~~dgVvlaaD~~~~~~~~~~~~~~KI~~i~~~i~~~~sG~~~D~~~ 80 (209)
T cd01911 1 YDRSITTFSPEGRLFQVEYALEAVKNGSTAVGIKGKDGVVLAVEKKVTSKLLDPSSVEKIFKIDDHIGCAVAGLTADARV 80 (209)
T ss_pred CCCCCccCCCCCEEeHHHHHHHHHHcCCCEEEEEECCEEEEEEEecCCccccCCcccceEEEecCCeEEEeccCcHhHHH
Confidence 89999999999999999999999999999999999999999999999987777789999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHhhcCceeeeeEeEEEEEEeCC-CCeEEEECCCCceEeeeeEEec
Q 027541 86 LVRKSRKQAEQYHRLYKEPIPVTQLVRETAAVMQEFTQSGGVRPFGVSLLVAGYDDK-GPQLYQVDPSGSYFSWKASAMG 164 (222)
Q Consensus 86 l~~~~~~~~~~~~~~~~~~i~~~~la~~l~~~~~~~~~~~~~rP~~~~~il~G~d~~-g~~L~~id~~G~~~~~~~~a~G 164 (222)
+.+.++.++..|+.+++++++++.+|++++++++.|+++++.|||+|++||+|||++ ||+||.+||.|++.+++++++|
T Consensus 81 l~~~l~~~~~~~~~~~g~~~~~~~la~~ls~~~~~~~~~~~~rP~~v~~iv~G~d~~~~~~Ly~iD~~G~~~~~~~~a~G 160 (209)
T cd01911 81 LVNRARVEAQNYRYTYGEPIPVEVLVKRIADLAQVYTQYGGVRPFGVSLLIAGYDEEGGPQLYQTDPSGTYFGYKATAIG 160 (209)
T ss_pred HHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHhcccCccChhheEEEEEEcCCCCcEEEEECCCCCeeeeeEEEeC
Confidence 999999999999999999999999999999999999999999999999999999975 8999999999999999999999
Q ss_pred CCcHHHHHHHHHhccCCCCHHHHHHHHHHHHHhhhccCCCCCcEEEEEE
Q 027541 165 KNVSNAKTFLEKRYVEEMELDDAVHTAILTLKEGFEGQISEKNIEIGII 213 (222)
Q Consensus 165 ~gs~~~~~~L~~~~~~~~~~~ea~~l~~~~L~~~~~~d~~~~~iei~ii 213 (222)
.+++.++++|++.|+++|+++||++++++||+++.+||.+++.++|+++
T Consensus 161 ~g~~~~~~~L~~~~~~~ms~~ea~~l~~~~l~~~~~~d~~~~~~~i~i~ 209 (209)
T cd01911 161 KGSQEAKTFLEKRYKKDLTLEEAIKLALKALKEVLEEDKKAKNIEIAVV 209 (209)
T ss_pred CCcHHHHHHHHHhcccCCCHHHHHHHHHHHHHHHHhccCCCCcEEEEEC
Confidence 9999999999999999999999999999999999999889999999875
No 14
>KOG0183 consensus 20S proteasome, regulatory subunit alpha type PSMA7/PRE6 [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=3.6e-58 Score=357.11 Aligned_cols=217 Identities=38% Similarity=0.659 Sum_probs=209.3
Q ss_pred CCCCCcceeeCCCCcchhhhhHHHHhccCCcEEEEEeCCEEEEEEeecCCCCcccCCccceEEEecCcEEEEEecChhhH
Q 027541 4 SQYSFSLTTFSPSGKLVQIEHALTAVGSGQTSLGIKASNGVVIATEKKLPSILVDESSVHKIQSLTPNIGVVYSGMGPDF 83 (222)
Q Consensus 4 ~~~d~~~~~f~p~G~l~q~eya~~a~~~G~t~vgi~~~dgvvla~d~~~~~~l~~~~~~~KI~~i~~~i~~~~sG~~~D~ 83 (222)
++||+.+|+|||||+|+|||||++|+.+|+|+||++++|+|||+.+++....|...+...||..+|+|++++++|+.+|+
T Consensus 2 srydraltvFSPDGhL~QVEYAqEAvrkGstaVgvrg~~~vvlgvEkkSv~~Lq~~r~~rkI~~ld~hV~mafaGl~aDA 81 (249)
T KOG0183|consen 2 SRYDRALTVFSPDGHLFQVEYAQEAVRKGSTAVGVRGNNCVVLGVEKKSVPKLQDERTVRKISMLDDHVVMAFAGLTADA 81 (249)
T ss_pred CccccceEEECCCCCEEeeHhHHHHHhcCceEEEeccCceEEEEEeecchhhhhhhhhhhhheeecceeeEEecCCCccc
Confidence 68999999999999999999999999999999999999999999999998999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHhhcCceeeeeEeEEEEEEeCCC-CeEEEECCCCceEeeeeEE
Q 027541 84 RVLVRKSRKQAEQYHRLYKEPIPVTQLVRETAAVMQEFTQSGGVRPFGVSLLVAGYDDKG-PQLYQVDPSGSYFSWKASA 162 (222)
Q Consensus 84 ~~l~~~~~~~~~~~~~~~~~~i~~~~la~~l~~~~~~~~~~~~~rP~~~~~il~G~d~~g-~~L~~id~~G~~~~~~~~a 162 (222)
+.++++.|.+|++|+++.+.+++++.++++|+.+.|.||++.|.||||++.+|+|+|+.| |+||++||+|.+++|.+.|
T Consensus 82 rilinrArvecqShrlt~edpvtveyitRyiA~~kQrYTqs~grRPFGvs~Li~GfD~~g~p~lyqtePsG~f~ewka~a 161 (249)
T KOG0183|consen 82 RILINRARVECQSHRLTLEDPVTVEYITRYIAGLKQRYTQSNGRRPFGVSTLIGGFDPDGTPRLYQTEPSGIFSEWKANA 161 (249)
T ss_pred eeehhhHhHhhhhhhcccCCCcHHHHHHHHHHHhhhhhhccCCcccccceEEEEeeCCCCCeeeEeeCCCcchhhhhccc
Confidence 999999999999999999999999999999999999999999999999999999999976 9999999999999999999
Q ss_pred ecCCcHHHHHHHHHhccCC--CCHHHHHHHHHHHHHhhhccCCCCCcEEEEEEeeCCceEEC
Q 027541 163 MGKNVSNAKTFLEKRYVEE--MELDDAVHTAILTLKEGFEGQISEKNIEIGIIGEKKEFRQY 222 (222)
Q Consensus 163 ~G~gs~~~~~~L~~~~~~~--~~~~ea~~l~~~~L~~~~~~d~~~~~iei~ii~~~~~~~~~ 222 (222)
+|.+++.+..+||++|.+. .+..++++|++++|.++.. ..+.++|++|+++++.+++|
T Consensus 162 iGr~sk~VrEflEK~y~e~~~~~~~~~ikL~ir~LleVvq--s~~~nie~aVm~~~~~~~~l 221 (249)
T KOG0183|consen 162 IGRSSKTVREFLEKNYKEEAIATEGETIKLAIRALLEVVQ--SGGKNIEVAVMKRRKDLKML 221 (249)
T ss_pred cccccHHHHHHHHHhcccccccccccHHHHHHHHHHHHhh--cCCCeeEEEEEecCCceeec
Confidence 9999999999999999886 7889999999999999886 47899999999999888764
No 15
>COG0638 PRE1 20S proteasome, alpha and beta subunits [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=2.6e-56 Score=367.11 Aligned_cols=216 Identities=44% Similarity=0.719 Sum_probs=205.7
Q ss_pred CCCCCcceeeCCCCcchhhhhHHHHhccC-CcEEEEEeCCEEEEEEeecCCCC-cccCCccceEEEecCcEEEEEecChh
Q 027541 4 SQYSFSLTTFSPSGKLVQIEHALTAVGSG-QTSLGIKASNGVVIATEKKLPSI-LVDESSVHKIQSLTPNIGVVYSGMGP 81 (222)
Q Consensus 4 ~~~d~~~~~f~p~G~l~q~eya~~a~~~G-~t~vgi~~~dgvvla~d~~~~~~-l~~~~~~~KI~~i~~~i~~~~sG~~~ 81 (222)
.+||+.+++|+|||+++|+||+.+++.+| +|+|||+++||||||+|+|.++. ++..++.+|||+|+|||+|++||..+
T Consensus 1 ~~~~~~~~~fsp~g~l~q~e~a~~a~~~~gtT~vgik~~dgVVlaadkr~t~~~~~~~~~~~Ki~~I~d~i~~~~sG~~a 80 (236)
T COG0638 1 AGYDRAITIFSPEGRLFQVEYALEAVKRGGTTTVGIKGKDGVVLAADKRATSGLLIASSNVEKIFKIDDHIGMAIAGLAA 80 (236)
T ss_pred CCCcCcceeECCCCchHHHHHHHHHHHcCCceEEEEEecCEEEEEEeccCCCCceecccccceEEEecCCEEEEeccCcH
Confidence 47999999999999999999999999875 99999999999999999999986 55566799999999999999999999
Q ss_pred hHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHhhcCceeeeeEeEEEEEEeCCCCeEEEECCCCceEeeeeE
Q 027541 82 DFRVLVRKSRKQAEQYHRLYKEPIPVTQLVRETAAVMQEFTQSGGVRPFGVSLLVAGYDDKGPQLYQVDPSGSYFSWKAS 161 (222)
Q Consensus 82 D~~~l~~~~~~~~~~~~~~~~~~i~~~~la~~l~~~~~~~~~~~~~rP~~~~~il~G~d~~g~~L~~id~~G~~~~~~~~ 161 (222)
|++.++++++.+++.|++.++++|+++.+++++++.+|.++++ .|||++++|+||+|+++|+||++||+|++.++++.
T Consensus 81 Da~~lv~~~r~~a~~~~~~~~~~i~v~~la~~ls~~l~~~~~~--~rP~gv~~iiaG~d~~~p~Ly~~Dp~G~~~~~~~~ 158 (236)
T COG0638 81 DAQVLVRYARAEAQLYRLRYGEPISVEALAKLLSNILQEYTQS--GRPYGVSLLVAGVDDGGPRLYSTDPSGSYNEYKAT 158 (236)
T ss_pred hHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHhccC--cccceEEEEEEEEcCCCCeEEEECCCCceeecCEE
Confidence 9999999999999999999999999999999999999999987 89999999999999978999999999999999999
Q ss_pred EecCCcHHHHHHHHHhccCCCCHHHHHHHHHHHHHhhhccCC-CCCcEEEEEEeeCCceEE
Q 027541 162 AMGKNVSNAKTFLEKRYVEEMELDDAVHTAILTLKEGFEGQI-SEKNIEIGIIGEKKEFRQ 221 (222)
Q Consensus 162 a~G~gs~~~~~~L~~~~~~~~~~~ea~~l~~~~L~~~~~~d~-~~~~iei~ii~~~~~~~~ 221 (222)
|+|+|++.++++||+.|+++|++|||++++++||+++.+||. ++.+++|++|++++.|+.
T Consensus 159 a~Gsgs~~a~~~Le~~y~~~m~~eeai~la~~al~~a~~rd~~s~~~~~v~vi~~~~~~~~ 219 (236)
T COG0638 159 AIGSGSQFAYGFLEKEYREDLSLEEAIELAVKALRAAIERDAASGGGIEVAVITKDEGFRK 219 (236)
T ss_pred EEcCCcHHHHHHHHhhccCCCCHHHHHHHHHHHHHHHHhccccCCCCeEEEEEEcCCCeEE
Confidence 999999999999999999999999999999999999999996 899999999999765654
No 16
>KOG0184 consensus 20S proteasome, regulatory subunit alpha type PSMA3/PRE10 [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1.7e-55 Score=343.78 Aligned_cols=214 Identities=39% Similarity=0.626 Sum_probs=207.0
Q ss_pred CCCCCCcceeeCCCCcchhhhhHHHHhccCCcEEEEEeCCEEEEEEeecCCCCcccCCccceEEEecCcEEEEEecChhh
Q 027541 3 DSQYSFSLTTFSPSGKLVQIEHALTAVGSGQTSLGIKASNGVVIATEKKLPSILVDESSVHKIQSLTPNIGVVYSGMGPD 82 (222)
Q Consensus 3 ~~~~d~~~~~f~p~G~l~q~eya~~a~~~G~t~vgi~~~dgvvla~d~~~~~~l~~~~~~~KI~~i~~~i~~~~sG~~~D 82 (222)
.+|||++.++|||+||++|+|||+||+.+|+|+|||||+||||+++|+..+++|..++...|||.|++||+|+++|+.+|
T Consensus 5 GtGyDls~s~fSpdGrvfQveYA~KAven~~T~IGIk~kdGVVl~vEKli~SkLy~p~sn~ri~~V~r~iG~avaGl~~D 84 (254)
T KOG0184|consen 5 GTGYDLSASTFSPDGRVFQVEYAQKAVENSGTCIGIKCKDGVVLAVEKLITSKLYEPGSNERIFSVDRHIGMAVAGLIPD 84 (254)
T ss_pred cccccccceeeCCCCceehHHHHHHHHhcCCcEEEEecCCeEEEEEeeeecccccccCCCCceEeecccccEEEeccccc
Confidence 58999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHhhcCceeeeeEeEEEEEEeCCCCeEEEECCCCceEeeeeEE
Q 027541 83 FRVLVRKSRKQAEQYHRLYKEPIPVTQLVRETAAVMQEFTQSGGVRPFGVSLLVAGYDDKGPQLYQVDPSGSYFSWKASA 162 (222)
Q Consensus 83 ~~~l~~~~~~~~~~~~~~~~~~i~~~~la~~l~~~~~~~~~~~~~rP~~~~~il~G~d~~g~~L~~id~~G~~~~~~~~a 162 (222)
.+.+..+++.|+.+|+.+|+.++|.+.++.+++++.|.+|.++..||||+++++++||.+||+||.+||+|..+.++.+|
T Consensus 85 g~~l~~~ar~ea~~~~~~y~~piP~~~la~rva~yvh~~Tly~~vRpfG~~~~~~~yd~~g~~LymiepSG~~~~Y~~aa 164 (254)
T KOG0184|consen 85 GRHLVNRARDEAASWRKNYGDPIPGKHLADRVADYVHAFTLYSSVRPFGASTILGSYDDEGPQLYMIEPSGSSYGYKGAA 164 (254)
T ss_pred hHHHHHHHHHHHHHHHHhcCCCCchHHHHHHHHhhhheeehhhccccccceEEEEEEeCCCceEEEEcCCCCccceeeee
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ecCCcHHHHHHHHHhccCCCCHHHHHHHHHHHHHhhhccC-CCCCcEEEEEEeeC
Q 027541 163 MGKNVSNAKTFLEKRYVEEMELDDAVHTAILTLKEGFEGQ-ISEKNIEIGIIGEK 216 (222)
Q Consensus 163 ~G~gs~~~~~~L~~~~~~~~~~~ea~~l~~~~L~~~~~~d-~~~~~iei~ii~~~ 216 (222)
+|.|.|.|++.||+.--.+|+.+|+++.+.+.|+.+.+.. -..-.+|+.|+..+
T Consensus 165 iGKgrq~aKtElEKL~~~~mt~~e~VkeaakIiY~~HDe~KdK~feiEm~wvg~e 219 (254)
T KOG0184|consen 165 IGKGRQAAKTELEKLKIDEMTCKELVKEAAKIIYKVHDENKDKEFEIEMGWVGEE 219 (254)
T ss_pred ccchhHHHHHHHHhcccccccHHHHHHHHHheeEeecccccCcceEEEEEEEEee
Confidence 9999999999999999899999999999999999887765 36778999999875
No 17
>KOG0863 consensus 20S proteasome, regulatory subunit alpha type PSMA1/PRE5 [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=2.9e-54 Score=338.53 Aligned_cols=220 Identities=35% Similarity=0.605 Sum_probs=211.8
Q ss_pred CCCCCCCCcceeeCCCCcchhhhhHHHHhccCCcEEEEEeCCEEEEEEeecCCCCcccCCccceEEEecCcEEEEEecCh
Q 027541 1 MGDSQYSFSLTTFSPSGKLVQIEHALTAVGSGQTSLGIKASNGVVIATEKKLPSILVDESSVHKIQSLTPNIGVVYSGMG 80 (222)
Q Consensus 1 ~~~~~~d~~~~~f~p~G~l~q~eya~~a~~~G~t~vgi~~~dgvvla~d~~~~~~l~~~~~~~KI~~i~~~i~~~~sG~~ 80 (222)
||+++||..+|+|||+|||+|||||++|++.|++.||+|.++..||++-++..+.| ++.++|||+||+|+++.++|++
T Consensus 1 Mfrnqyd~d~t~wsPqGrl~QvEya~EavkqGsatVGLks~thaVLvAl~r~~seL--ss~QkKi~~iD~h~g~siAGLt 78 (264)
T KOG0863|consen 1 MFRNQYDNDVTTWSPQGRLHQVEYAMEAVKQGSATVGLKSRTHAVLVALKRAQSEL--SSHQKKIFKIDDHIGISIAGLT 78 (264)
T ss_pred CCcccccCceeEECCcceehHHHHHHHHHhcccceEeecccceEEEeeeccchhHH--HHhhheeEecccccceEEeccC
Confidence 99999999999999999999999999999999999999999999999999888766 4578999999999999999999
Q ss_pred hhHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHhhcCceeeeeEeEEEEEEeCCCCeEEEECCCCceEeeee
Q 027541 81 PDFRVLVRKSRKQAEQYHRLYKEPIPVTQLVRETAAVMQEFTQSGGVRPFGVSLLVAGYDDKGPQLYQVDPSGSYFSWKA 160 (222)
Q Consensus 81 ~D~~~l~~~~~~~~~~~~~~~~~~i~~~~la~~l~~~~~~~~~~~~~rP~~~~~il~G~d~~g~~L~~id~~G~~~~~~~ 160 (222)
+|++.+.++++.+|..+++.|++++++..|...|++.+|..|++.+.|||||.++++|+|+.|||||+++|+|++.+++.
T Consensus 79 ~Darvl~~Ylr~ec~~~~~~~~r~~pv~rl~~~l~~k~q~~Tq~ygrRpYGVGllv~gYDe~G~hl~e~~Psg~v~e~~g 158 (264)
T KOG0863|consen 79 ADARVLSRYLRQECLNSRFIYGRPLPVLRLVEDLGDKAQENTQRYGRRPYGVGLLVAGYDESGPHLYEFCPSGNVFECKG 158 (264)
T ss_pred cchHHHHHHHHHHHhhhhhccCCcccHHHHHHHHHHHHhhhhhhhCCccccceEEEEeecCCCceeEEEcCCccEEEEee
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEecCCcHHHHHHHHHhcc--CCCCHHHHHHHHHHHHHhhhccC--CCCCcEEEEEEeeCCceEEC
Q 027541 161 SAMGKNVSNAKTFLEKRYV--EEMELDDAVHTAILTLKEGFEGQ--ISEKNIEIGIIGEKKEFRQY 222 (222)
Q Consensus 161 ~a~G~gs~~~~~~L~~~~~--~~~~~~ea~~l~~~~L~~~~~~d--~~~~~iei~ii~~~~~~~~~ 222 (222)
.++|+.||.++++||++.. ++++.||.++.+++||+.++..| +.+.+++|+|+.+|.+|++|
T Consensus 159 ~sIGsRSQsARTyLEr~~e~f~~~~~eELI~~gi~Alr~tlp~de~lt~~nvsI~Ivgkd~pf~~~ 224 (264)
T KOG0863|consen 159 MSIGSRSQSARTYLERNLEEFEDSSPEELIKHGIMALRETLPEDEDLTGENVSIAIVGKDEPFTIL 224 (264)
T ss_pred eecccchhhHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhhcCcccccccceeEEEEEeCCCceEee
Confidence 9999999999999999885 59999999999999999999744 79999999999999999985
No 18
>KOG0181 consensus 20S proteasome, regulatory subunit alpha type PSMA2/PRE8 [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=3e-54 Score=330.73 Aligned_cols=221 Identities=76% Similarity=1.133 Sum_probs=215.1
Q ss_pred CCCCCCCCcceeeCCCCcchhhhhHHHHhccCCcEEEEEeCCEEEEEEeecCCCCcccCCccceEEEecCcEEEEEecCh
Q 027541 1 MGDSQYSFSLTTFSPSGKLVQIEHALTAVGSGQTSLGIKASNGVVIATEKKLPSILVDESSVHKIQSLTPNIGVVYSGMG 80 (222)
Q Consensus 1 ~~~~~~d~~~~~f~p~G~l~q~eya~~a~~~G~t~vgi~~~dgvvla~d~~~~~~l~~~~~~~KI~~i~~~i~~~~sG~~ 80 (222)
|+..+|.+++|+|||+|+|-|+|||..|+.+|.+.|||+-.||||||++++..+.|....+.+|+++|.++|+|..||..
T Consensus 1 m~d~~y~fslTtFSpsGKL~QieyAL~Av~~G~~SvGi~A~nGvVlatekk~~s~L~~~~sv~KV~~i~~~IG~vYSGmg 80 (233)
T KOG0181|consen 1 MGDFGYSFSLTTFSPSGKLVQIEYALTAVVNGQTSVGIKAANGVVLATEKKDVSPLVDEESVRKVEKITPHIGCVYSGMG 80 (233)
T ss_pred CCCcccceeeEEEcCCCceehHHHHHHHHhCCCCceeeeecCceEEEeccCCCCccchhhhhhhHhhccCCcceEEecCC
Confidence 88899999999999999999999999999999999999999999999999999999988999999999999999999999
Q ss_pred hhHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHhhcCceeeeeEeEEEEEEeCCCCeEEEECCCCceEeeee
Q 027541 81 PDFRVLVRKSRKQAEQYHRLYKEPIPVTQLVRETAAVMQEFTQSGGVRPFGVSLLVAGYDDKGPQLYQVDPSGSYFSWKA 160 (222)
Q Consensus 81 ~D~~~l~~~~~~~~~~~~~~~~~~i~~~~la~~l~~~~~~~~~~~~~rP~~~~~il~G~d~~g~~L~~id~~G~~~~~~~ 160 (222)
+|++.+++..++.++.|...|+++||+..+...++..+|+|||+.|.||||+++++||||+.+|.||++||+|++..|++
T Consensus 81 pD~RvlV~~~rkiAe~Yy~vY~e~~pt~qlv~~~asvmQEyTqsgGvrPFGvslliaG~~~~~p~LyQvdPSGsyf~wka 160 (233)
T KOG0181|consen 81 PDYRVLVHKSRKIAEQYYRVYGEPIPTTQLVQEVASVMQEYTQSGGVRPFGVSLLIAGWDEGGPLLYQVDPSGSYFAWKA 160 (233)
T ss_pred CceeehhhHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhhcCCccccceEEEEeecCCCceeEEEECCccceeehhh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEecCCcHHHHHHHHHhccCCCCHHHHHHHHHHHHHhhhccCCCCCcEEEEEEeeCCceEEC
Q 027541 161 SAMGKNVSNAKTFLEKRYVEEMELDDAVHTAILTLKEGFEGQISEKNIEIGIIGEKKEFRQY 222 (222)
Q Consensus 161 ~a~G~gs~~~~~~L~~~~~~~~~~~ea~~l~~~~L~~~~~~d~~~~~iei~ii~~~~~~~~~ 222 (222)
+|+|.+.-.++.+||++|+++|.++++++.++.+|++..+..++.+++||.++...+ |++|
T Consensus 161 tA~Gkn~v~aktFlEkR~~edleldd~ihtailtlkE~fege~~~~nieigv~~~~~-F~~l 221 (233)
T KOG0181|consen 161 TAMGKNYVNAKTFLEKRYNEDLELDDAIHTAILTLKESFEGEMTAKNIEIGVCGENG-FRRL 221 (233)
T ss_pred hhhccCcchHHHHHHHHhccccccchHHHHHHHHHHHHhccccccCceEEEEecCCc-eeec
Confidence 999999999999999999999999999999999999999999999999999999544 7764
No 19
>KOG0178 consensus 20S proteasome, regulatory subunit alpha type PSMA4/PRE9 [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=3.5e-53 Score=328.51 Aligned_cols=217 Identities=40% Similarity=0.617 Sum_probs=207.6
Q ss_pred CCCCCCCcceeeCCCCcchhhhhHHHHhccCCcEEEEEeCCEEEEEEeecCCCCcccC-CccceEEEecCcEEEEEecCh
Q 027541 2 GDSQYSFSLTTFSPSGKLVQIEHALTAVGSGQTSLGIKASNGVVIATEKKLPSILVDE-SSVHKIQSLTPNIGVVYSGMG 80 (222)
Q Consensus 2 ~~~~~d~~~~~f~p~G~l~q~eya~~a~~~G~t~vgi~~~dgvvla~d~~~~~~l~~~-~~~~KI~~i~~~i~~~~sG~~ 80 (222)
|..+||...|+||||||++|||||++++.+.+|+|||..+||||||++++.+++|+.. .+.+||++|+|||+|+++|+.
T Consensus 1 msr~ydsrttiFspEGRLyQVEyAmeais~aGt~iGila~DGvvLa~e~k~t~kll~t~~~~EKiY~l~d~iaC~vaGlt 80 (249)
T KOG0178|consen 1 MSRRYDSRTTIFSPEGRLYQVEYAMEAISHAGTCIGILASDGVVLAGENKVTSKLLDTSIPMEKIYKLNDNIACAVAGLT 80 (249)
T ss_pred CCcCcCCcccccCCCcchHHHHHHHHHHhhhcceeEEEecCceEEEeecccchhhhhccccHHHhhhcCCceEEEEeccc
Confidence 5678999999999999999999999999999999999999999999999999987764 589999999999999999999
Q ss_pred hhHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHhhcCceeeeeEeEEEEEEeC-CCCeEEEECCCCceEeee
Q 027541 81 PDFRVLVRKSRKQAEQYHRLYKEPIPVTQLVRETAAVMQEFTQSGGVRPFGVSLLVAGYDD-KGPQLYQVDPSGSYFSWK 159 (222)
Q Consensus 81 ~D~~~l~~~~~~~~~~~~~~~~~~i~~~~la~~l~~~~~~~~~~~~~rP~~~~~il~G~d~-~g~~L~~id~~G~~~~~~ 159 (222)
+|+..|.+.+|..++.|.++|+++||++.|++.+|+..|.|||+.|.||||||+|.+|||+ -|.+||+-||+|++..|+
T Consensus 81 ~DAnvL~n~aRi~AQ~yl~~y~e~iP~eqLv~~lcdiKQayTQygG~RPFGVSfLYaGwd~~~gyqLy~SdPSGny~gWk 160 (249)
T KOG0178|consen 81 SDANVLKNYARIIAQRYLFRYGEEIPCEQLVTFLCDIKQAYTQYGGKRPFGVSFLYAGWDDRYGYQLYQSDPSGNYGGWK 160 (249)
T ss_pred ccHHHHHHHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHHHHhhccCcCCCceeeeeeceecCcceEEEecCCCCCccccc
Confidence 9999999999999999999999999999999999999999999999999999999999998 579999999999999999
Q ss_pred eEEecCCcHHHHHHHHHhccCCC-CHHHHHHHHHHHHHhhhccC-CCCCcEEEEEEeeCCc
Q 027541 160 ASAMGKNVSNAKTFLEKRYVEEM-ELDDAVHTAILTLKEGFEGQ-ISEKNIEIGIIGEKKE 218 (222)
Q Consensus 160 ~~a~G~gs~~~~~~L~~~~~~~~-~~~ea~~l~~~~L~~~~~~d-~~~~~iei~ii~~~~~ 218 (222)
+.++|.+++.++..|...|+++. +++||+.++++.|...++.. +....+||+.++++.+
T Consensus 161 a~ciG~N~~Aa~s~Lkqdykdd~~~~~eA~~laikvL~kt~d~~~lt~eklEia~~~k~~~ 221 (249)
T KOG0178|consen 161 ATCIGANSGAAQSMLKQDYKDDENDLEEAKALAIKVLSKTLDSGSLTAEKLEIATITKDCN 221 (249)
T ss_pred eeeeccchHHHHHHHHhhhccccccHHHHHHHHHHHHHhhcccCCCChhheEEEEEEecCC
Confidence 99999999999999999999875 59999999999999988876 6999999999999854
No 20
>KOG0182 consensus 20S proteasome, regulatory subunit alpha type PSMA6/SCL1 [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=6.4e-51 Score=316.10 Aligned_cols=220 Identities=33% Similarity=0.614 Sum_probs=213.3
Q ss_pred CCCCCCcceeeCCCCcchhhhhHHHHhcc-CCcEEEEEeCCEEEEEEeecCCCCcccCCccceEEEecCcEEEEEecChh
Q 027541 3 DSQYSFSLTTFSPSGKLVQIEHALTAVGS-GQTSLGIKASNGVVIATEKKLPSILVDESSVHKIQSLTPNIGVVYSGMGP 81 (222)
Q Consensus 3 ~~~~d~~~~~f~p~G~l~q~eya~~a~~~-G~t~vgi~~~dgvvla~d~~~~~~l~~~~~~~KI~~i~~~i~~~~sG~~~ 81 (222)
..|||+.+|+|||||||+|||||.||+++ |-|.||++++|++|+++.++.+.+|++++.+..+|+|..+|+|+++|..+
T Consensus 6 ~agfDrhitIFspeGrLyQVEYafkAin~~gltsVavrgkDcavvvsqKkvpDKLld~~tvt~~f~itk~ig~v~tG~~a 85 (246)
T KOG0182|consen 6 SAGFDRHITIFSPEGRLYQVEYAFKAINQAGLTSVAVRGKDCAVVVTQKKVPDKLLDSSTVTHLFRITKKIGCVITGMIA 85 (246)
T ss_pred cCCccceEEEECCCceEEeeehHHHHhhcCCCceEEEcCCceEEEEecccCcccccccccceeEEEeeccceEEEecCCc
Confidence 57999999999999999999999999998 77999999999999999999999999999999999999999999999999
Q ss_pred hHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHhhcCceeeeeEeEEEEEEeC-CCCeEEEECCCCceEeeee
Q 027541 82 DFRVLVRKSRKQAEQYHRLYKEPIPVTQLVRETAAVMQEFTQSGGVRPFGVSLLVAGYDD-KGPQLYQVDPSGSYFSWKA 160 (222)
Q Consensus 82 D~~~l~~~~~~~~~~~~~~~~~~i~~~~la~~l~~~~~~~~~~~~~rP~~~~~il~G~d~-~g~~L~~id~~G~~~~~~~ 160 (222)
|++..+.+++.++.++++.||.+||++.||+++++..|.|||+..+||+||..++.|+|+ .||.+|..||.|.+..+++
T Consensus 86 Dar~~v~rar~eAa~~~yk~Gyemp~DiL~k~~Ad~~QvytQ~a~mRplg~~~~~i~~D~E~gP~vYk~DpAGyy~g~kA 165 (246)
T KOG0182|consen 86 DARSQVQRARYEAAEFRYKYGYEMPCDILAKRMADKSQVYTQNAAMRPLGVAATLIGVDEERGPSVYKTDPAGYYYGFKA 165 (246)
T ss_pred chHHHHHHHHHHHHhhhhhcCCCCCHHHHHHHHhhHHHHHhhhhhhcccceeEEEEEeccccCcceEeecCcccccccee
Confidence 999999999999999999999999999999999999999999999999999999999998 5899999999999999999
Q ss_pred EEecCCcHHHHHHHHHhccCC--CCHHHHHHHHHHHHHhhhccCCCCCcEEEEEEeeCCc-eEEC
Q 027541 161 SAMGKNVSNAKTFLEKRYVEE--MELDDAVHTAILTLKEGFEGQISEKNIEIGIIGEKKE-FRQY 222 (222)
Q Consensus 161 ~a~G~gs~~~~~~L~~~~~~~--~~~~ea~~l~~~~L~~~~~~d~~~~~iei~ii~~~~~-~~~~ 222 (222)
.|.|...+.+..+||++++++ ++.+|++++++.||..++..|...+.+||.+++.+.+ |++|
T Consensus 166 taaG~Kq~e~tsfLEKk~Kk~~~~t~~e~ve~ai~al~~sl~~Dfk~se~EVgvv~~~~p~f~~L 230 (246)
T KOG0182|consen 166 TAAGVKQQEATSFLEKKYKKDIDLTFEETVETAISALQSSLGIDFKSSELEVGVVTVDNPEFRIL 230 (246)
T ss_pred eecccchhhHHHHHHHhhccCccchHHHHHHHHHHHHHHHHhcccCCcceEEEEEEcCCcceeec
Confidence 999999999999999999987 6799999999999999999999999999999999987 9876
No 21
>cd03758 proteasome_beta_type_2 proteasome beta type-2 subunit. The 20S proteasome, multisubunit proteolytic complex, is the central enzyme of nonlysosomal protein degradation in both the cytosol and nucleus. It is composed of 28 subunits arranged as four homoheptameric rings that stack on top of one another forming an elongated alpha-beta-beta-alpha cylinder with a central cavity. The proteasome alpha and beta subunits are members of the N-terminal nucleophile (Ntn)-hydrolase superfamily. Their N-terminal threonine residues are exposed as a nucleophile in peptide bond hydrolysis.Mammals have 7 alpha and 7 beta proteasome subunits while archaea have one of each.
Probab=100.00 E-value=9.9e-47 Score=302.19 Aligned_cols=187 Identities=24% Similarity=0.296 Sum_probs=177.8
Q ss_pred CcEEEEEeCCEEEEEEeecCCC-CcccCCccceEEEecCcEEEEEecChhhHHHHHHHHHHHHHHHHHHhCCCCCHHHHH
Q 027541 33 QTSLGIKASNGVVIATEKKLPS-ILVDESSVHKIQSLTPNIGVVYSGMGPDFRVLVRKSRKQAEQYHRLYKEPIPVTQLV 111 (222)
Q Consensus 33 ~t~vgi~~~dgvvla~d~~~~~-~l~~~~~~~KI~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~i~~~~la 111 (222)
+|+|||+++||||||+|++.++ .++.+++.+|||+|++++++++||..+|++.+.++++.+++.|++.++++++++.++
T Consensus 2 ~t~igi~~~dgVvlaad~r~~~~~~~~~~~~~KI~~I~~~i~~~~sG~~aD~~~l~~~~~~~~~~~~~~~~~~i~~~~la 81 (193)
T cd03758 2 ETLIGIKGKDFVILAADTSAARSILVLKDDEDKIYKLSDHKLMACSGEAGDRLQFAEYIQKNIQLYKMRNGYELSPKAAA 81 (193)
T ss_pred ceEEEEEeCCEEEEEEcCccccCcEEEecCcccEEEeCCCeEEEEccchHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHH
Confidence 6899999999999999999986 678889999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhhcCceeeeeEeEEEEEEeC-CCCeEEEECCCCceEeeeeEEecCCcHHHHHHHHHhccCCCCHHHHHHH
Q 027541 112 RETAAVMQEFTQSGGVRPFGVSLLVAGYDD-KGPQLYQVDPSGSYFSWKASAMGKNVSNAKTFLEKRYVEEMELDDAVHT 190 (222)
Q Consensus 112 ~~l~~~~~~~~~~~~~rP~~~~~il~G~d~-~g~~L~~id~~G~~~~~~~~a~G~gs~~~~~~L~~~~~~~~~~~ea~~l 190 (222)
+++++++|.++++. |||++++|++|||+ .||+||++||.|++.+++++|+|+|+++++++||+.|+++||+|||+++
T Consensus 82 ~~l~~~~~~~~~~~--rP~~~~~li~G~d~~~~p~Ly~~d~~G~~~~~~~~a~G~gs~~~~~~Le~~~~~~ms~eeai~l 159 (193)
T cd03758 82 NFTRRELAESLRSR--TPYQVNLLLAGYDKVEGPSLYYIDYLGTLVKVPYAAHGYGAYFCLSILDRYYKPDMTVEEALEL 159 (193)
T ss_pred HHHHHHHHHHhhcC--CCeEEEEEEEEEcCCCCcEEEEECCCcceEECCeeEEeecHHHHHHHHHhccCCCCCHHHHHHH
Confidence 99999999887653 89999999999996 7899999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhhhccC-CCCCcEEEEEEeeCCceEE
Q 027541 191 AILTLKEGFEGQ-ISEKNIEIGIIGEKKEFRQ 221 (222)
Q Consensus 191 ~~~~L~~~~~~d-~~~~~iei~ii~~~~~~~~ 221 (222)
+.+||+.+.+|| .++.+++|++|+++|..++
T Consensus 160 ~~~a~~~~~~rd~~~~~~i~i~ii~~~g~~~~ 191 (193)
T cd03758 160 MKKCIKELKKRFIINLPNFTVKVVDKDGIRDL 191 (193)
T ss_pred HHHHHHHHHHhccccCCceEEEEEcCCCeEeC
Confidence 999999999998 5999999999999986553
No 22
>cd03761 proteasome_beta_type_5 proteasome beta type-5 subunit. The 20S proteasome, multisubunit proteolytic complex, is the central enzyme of nonlysosomal protein degradation in both the cytosol and nucleus. It is composed of 28 subunits arranged as four homoheptameric rings that stack on top of one another forming an elongated alpha-beta-beta-alpha cylinder with a central cavity. The proteasome alpha and beta subunits are members of the N-terminal nucleophile (Ntn)-hydrolase superfamily. Their N-terminal threonine residues are exposed as a nucleophile in peptide bond hydrolysis. Mammals have 7 alpha and 7 beta proteasome subunits while archaea have one of each.
Probab=100.00 E-value=1.4e-46 Score=300.21 Aligned_cols=185 Identities=18% Similarity=0.298 Sum_probs=176.8
Q ss_pred CcEEEEEeCCEEEEEEeecCCC-CcccCCccceEEEecCcEEEEEecChhhHHHHHHHHHHHHHHHHHHhCCCCCHHHHH
Q 027541 33 QTSLGIKASNGVVIATEKKLPS-ILVDESSVHKIQSLTPNIGVVYSGMGPDFRVLVRKSRKQAEQYHRLYKEPIPVTQLV 111 (222)
Q Consensus 33 ~t~vgi~~~dgvvla~d~~~~~-~l~~~~~~~KI~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~i~~~~la 111 (222)
+|+|||+++||||||+|++.++ .++.+++.+|||+|++|++++++|..+|++.+.++++.+++.|+++++++++++.++
T Consensus 1 tT~igi~~kdgVvla~d~r~~~~~~~~~~~~~KI~~I~~~i~~~~sG~~~D~~~l~~~~r~~~~~y~~~~~~~i~~~~la 80 (188)
T cd03761 1 TTTLAFIFQGGVIVAVDSRATAGSYIASQTVKKVIEINPYLLGTMAGGAADCQYWERVLGRECRLYELRNKERISVAAAS 80 (188)
T ss_pred CcEEEEEECCEEEEEEcCCccCCcEEEcCCcceEEEccCcEEEEeCccHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHH
Confidence 5899999999999999999998 677788999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhhcCceeeeeEeEEEEEEeCCCCeEEEECCCCceEeeeeEEecCCcHHHHHHHHHhccCCCCHHHHHHHH
Q 027541 112 RETAAVMQEFTQSGGVRPFGVSLLVAGYDDKGPQLYQVDPSGSYFSWKASAMGKNVSNAKTFLEKRYVEEMELDDAVHTA 191 (222)
Q Consensus 112 ~~l~~~~~~~~~~~~~rP~~~~~il~G~d~~g~~L~~id~~G~~~~~~~~a~G~gs~~~~~~L~~~~~~~~~~~ea~~l~ 191 (222)
+++++++|.+++ .||++++||||||++||+||.+||.|++.+++++|+|+|+++++++||+.|+++|+.|||++++
T Consensus 81 ~~ls~~l~~~~~----~~~~v~~li~G~D~~g~~L~~~dp~G~~~~~~~~a~G~g~~~~~~~Le~~~~~~~s~eea~~l~ 156 (188)
T cd03761 81 KLLSNMLYQYKG----MGLSMGTMICGWDKTGPGLYYVDSDGTRLKGDLFSVGSGSTYAYGVLDSGYRYDLSVEEAYDLA 156 (188)
T ss_pred HHHHHHHHhcCC----CCeEEEEEEEEEeCCCCEEEEEcCCceEEEcCeEEEcccHHHHHHHHHhcCCCCCCHHHHHHHH
Confidence 999999999864 4899999999999989999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhhhccC-CCCCcEEEEEEeeCCceEE
Q 027541 192 ILTLKEGFEGQ-ISEKNIEIGIIGEKKEFRQ 221 (222)
Q Consensus 192 ~~~L~~~~~~d-~~~~~iei~ii~~~~~~~~ 221 (222)
.+||+.+.+|| .++++++|++|+++|-.++
T Consensus 157 ~~~l~~~~~rd~~sg~~~~v~ii~~~g~~~~ 187 (188)
T cd03761 157 RRAIYHATHRDAYSGGNVNLYHVREDGWRKI 187 (188)
T ss_pred HHHHHHHHHhcccCCCCeEEEEEcCCceEEc
Confidence 99999999998 5999999999999986553
No 23
>TIGR03634 arc_protsome_B proteasome endopeptidase complex, archaeal, beta subunit. This protein family describes the archaeal proteasome beta subunit, homologous to both the alpha subunit and to the alpha and beta subunits of eukaryotic proteasome subunits. This family is universal in the first 29 complete archaeal genomes but occasionally is duplicated.
Probab=100.00 E-value=6.2e-46 Score=295.74 Aligned_cols=182 Identities=29% Similarity=0.477 Sum_probs=175.6
Q ss_pred CCcEEEEEeCCEEEEEEeecCC-CCcccCCccceEEEecCcEEEEEecChhhHHHHHHHHHHHHHHHHHHhCCCCCHHHH
Q 027541 32 GQTSLGIKASNGVVIATEKKLP-SILVDESSVHKIQSLTPNIGVVYSGMGPDFRVLVRKSRKQAEQYHRLYKEPIPVTQL 110 (222)
Q Consensus 32 G~t~vgi~~~dgvvla~d~~~~-~~l~~~~~~~KI~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~i~~~~l 110 (222)
|+|+|||+++||||||+|++.+ +.++.+++.+|||+|+++++++++|..+|++.+.++++.+++.|+..++++++++.+
T Consensus 1 G~t~igi~~~dgVvla~d~~~~~~~~i~~~~~~KI~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 80 (185)
T TIGR03634 1 GTTTVGIKCKDGVVLAADKRASMGNFVASKNAKKVFQIDDYIAMTIAGSVGDAQSLVRILKAEAKLYELRRGRPMSVKAL 80 (185)
T ss_pred CCcEEEEEeCCEEEEEEcCcccCCCEEecCCcccEEEcCCCEEEEcCchHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHH
Confidence 7899999999999999999998 478888899999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhhcCceeeeeEeEEEEEEeCCCCeEEEECCCCceEeeeeEEecCCcHHHHHHHHHhccCCCCHHHHHHH
Q 027541 111 VRETAAVMQEFTQSGGVRPFGVSLLVAGYDDKGPQLYQVDPSGSYFSWKASAMGKNVSNAKTFLEKRYVEEMELDDAVHT 190 (222)
Q Consensus 111 a~~l~~~~~~~~~~~~~rP~~~~~il~G~d~~g~~L~~id~~G~~~~~~~~a~G~gs~~~~~~L~~~~~~~~~~~ea~~l 190 (222)
+++|++.+|.+ ++|||++++|+||||++||+||.+||.|++.+++++|+|.++++++++|++.|+++|+++||+++
T Consensus 81 a~~l~~~~~~~----~~rP~~v~~ivaG~d~~g~~Ly~~d~~G~~~~~~~~a~G~g~~~~~~~Le~~~~~~~s~~ea~~l 156 (185)
T TIGR03634 81 ATLLSNILNSN----RFFPFIVQLLVGGVDEEGPHLYSLDPAGGIIEDDYTATGSGSPVAYGVLEDEYREDMSVEEAKKL 156 (185)
T ss_pred HHHHHHHHHhc----CCCCeEEEEEEEEEeCCCCEEEEECCCCCeEECCEEEEcCcHHHHHHHHHhcCCCCCCHHHHHHH
Confidence 99999999876 48999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhhhccC-CCCCcEEEEEEeeCC
Q 027541 191 AILTLKEGFEGQ-ISEKNIEIGIIGEKK 217 (222)
Q Consensus 191 ~~~~L~~~~~~d-~~~~~iei~ii~~~~ 217 (222)
+++||+.+.+|+ .++.+++|++|+++|
T Consensus 157 ~~~~l~~~~~r~~~~~~~~~v~ii~~~g 184 (185)
T TIGR03634 157 AVRAIKSAIERDVASGNGIDVAVITKDG 184 (185)
T ss_pred HHHHHHHHHHhcccCCCCEEEEEEcCCC
Confidence 999999999998 599999999999987
No 24
>cd03760 proteasome_beta_type_4 proteasome beta type-4 subunit. The 20S proteasome, multisubunit proteolytic complex, is the central enzyme of nonlysosomal protein degradation in both the cytosol and nucleus. It is composed of 28 subunits arranged as four homoheptameric rings that stack on top of one another forming an elongated alpha-beta-beta-alpha cylinder with a central cavity. The proteasome alpha and beta subunits are members of the N-terminal nucleophile (Ntn)-hydrolase superfamily. Their N-terminal threonine residues are exposed as a nucleophile in peptide bond hydrolysis.Mammals have 7 alpha and 7 beta proteasome subunits while archaea have one of each.
Probab=100.00 E-value=3.9e-46 Score=299.69 Aligned_cols=186 Identities=19% Similarity=0.202 Sum_probs=175.8
Q ss_pred cCCcEEEEEeCCEEEEEEeecCC-CCcccCCccceEEEecCcEEEEEecChhhHHHHHHHHHHHHH-HHHHHhCCCCCHH
Q 027541 31 SGQTSLGIKASNGVVIATEKKLP-SILVDESSVHKIQSLTPNIGVVYSGMGPDFRVLVRKSRKQAE-QYHRLYKEPIPVT 108 (222)
Q Consensus 31 ~G~t~vgi~~~dgvvla~d~~~~-~~l~~~~~~~KI~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~-~~~~~~~~~i~~~ 108 (222)
.|+|+|||+++||||||+|++.+ +.++.+++.+|||+|++|++++++|..+|++.+.++++.+++ .+++.++.+++++
T Consensus 1 ~G~T~igi~~kdgVvlaad~r~~~~~~~~~~~~~KI~~i~~~i~~~~sG~~~D~~~l~~~~r~~~~~~~~~~~~~~~~~~ 80 (197)
T cd03760 1 TGTSVIAIKYKDGVIIAADTLGSYGSLARFKNVERIFKVGDNTLLGASGDYADFQYLKRLLDQLVIDDECLDDGHSLSPK 80 (197)
T ss_pred CCceEEEEEeCCcEEEEEcCcccccceeecCCCCcEEEecCcEEEEeCcchHHHHHHHHHHHHHHHHHHHHhCCCCCCHH
Confidence 58999999999999999999998 588888899999999999999999999999999999999987 5667899999999
Q ss_pred HHHHHHHHHHHHHhhcCceeeeeEeEEEEEEeC-CCCeEEEECCCCceEeeeeEEecCCcHHHHHHHHHhccC--CCCHH
Q 027541 109 QLVRETAAVMQEFTQSGGVRPFGVSLLVAGYDD-KGPQLYQVDPSGSYFSWKASAMGKNVSNAKTFLEKRYVE--EMELD 185 (222)
Q Consensus 109 ~la~~l~~~~~~~~~~~~~rP~~~~~il~G~d~-~g~~L~~id~~G~~~~~~~~a~G~gs~~~~~~L~~~~~~--~~~~~ 185 (222)
.+++++++++ |++++++|||+|++|+||||+ .||+||++||.|++.+++++|+|+|+++++++||+.|++ +|++|
T Consensus 81 ~la~~i~~~~--y~~~~~~rP~~v~~iiaG~D~~~gp~Ly~~D~~G~~~~~~~~a~G~g~~~~~~~Le~~~~~~~~ms~e 158 (197)
T cd03760 81 EIHSYLTRVL--YNRRSKMNPLWNTLVVGGVDNEGEPFLGYVDLLGTAYEDPHVATGFGAYLALPLLREAWEKKPDLTEE 158 (197)
T ss_pred HHHHHHHHHH--HHHhhcCCCceEEEEEEEEcCCCCEEEEEEcCCccEEECCEeEEccHHHHHHHHHHhhcCCCCCCCHH
Confidence 9999999986 667777899999999999997 789999999999999999999999999999999999999 99999
Q ss_pred HHHHHHHHHHHhhhccC-CCCCcEEEEEEeeCCc
Q 027541 186 DAVHTAILTLKEGFEGQ-ISEKNIEIGIIGEKKE 218 (222)
Q Consensus 186 ea~~l~~~~L~~~~~~d-~~~~~iei~ii~~~~~ 218 (222)
||++++.+||+.+.+|| .++++++|++|+++|.
T Consensus 159 ea~~l~~~~l~~~~~rd~~~~~~~~i~ii~~~g~ 192 (197)
T cd03760 159 EARALIEECMKVLYYRDARSINKYQIAVVTKEGV 192 (197)
T ss_pred HHHHHHHHHHHHHHHhccccCCceEEEEECCCCE
Confidence 99999999999999999 5999999999999873
No 25
>cd03759 proteasome_beta_type_3 proteasome beta type-3 subunit. The 20S proteasome, multisubunit proteolytic complex, is the central enzyme of nonlysosomal protein degradation in both the cytosol and nucleus. It is composed of 28 subunits arranged as four homoheptameric rings that stack on top of one another forming an elongated alpha-beta-beta-alpha cylinder with a central cavity. The proteasome alpha and beta subunits are members of the N-terminal nucleophile (Ntn)-hydrolase superfamily. Their N-terminal threonine residues are exposed as a nucleophile in peptide bond hydrolysis. Mammals have 7 alpha and 7 beta proteasome subunits while archaea have one of each.
Probab=100.00 E-value=7.7e-46 Score=297.52 Aligned_cols=185 Identities=18% Similarity=0.209 Sum_probs=173.0
Q ss_pred cCCcEEEEEeCCEEEEEEeecCCCCccc-CCccceEEEecCcEEEEEecChhhHHHHHHHHHHHHHHHHHHhCCCCCHHH
Q 027541 31 SGQTSLGIKASNGVVIATEKKLPSILVD-ESSVHKIQSLTPNIGVVYSGMGPDFRVLVRKSRKQAEQYHRLYKEPIPVTQ 109 (222)
Q Consensus 31 ~G~t~vgi~~~dgvvla~d~~~~~~l~~-~~~~~KI~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~i~~~~ 109 (222)
+|+|+|||+++||||||+|++.++.++. .++.+|||+|++|++++++|..+|++.+.++++.+++.|+++++++++++.
T Consensus 2 ~G~t~igik~~dgVvlaad~~~~~~~~~~~~~~~KI~~I~~~i~~~~sG~~~D~~~l~~~~r~~~~~~~~~~~~~~~~~~ 81 (195)
T cd03759 2 NGGAVVAMAGKDCVAIASDLRLGVQQQTVSTDFQKVFRIGDRLYIGLAGLATDVQTLAQKLRFRVNLYRLREEREIKPKT 81 (195)
T ss_pred CCceEEEEEcCCEEEEEEccccccCCEeEecCCCeEEEeCCCEEEEccchHHHHHHHHHHHHHHHHHHHHHhCCCCCHHH
Confidence 6999999999999999999999887655 557899999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhhcCceeeeeEeEEEEEEeC-CCCeEEEECCCCceEeee-eEEecCCcHHHHHHHHHhccCCCCHHHH
Q 027541 110 LVRETAAVMQEFTQSGGVRPFGVSLLVAGYDD-KGPQLYQVDPSGSYFSWK-ASAMGKNVSNAKTFLEKRYVEEMELDDA 187 (222)
Q Consensus 110 la~~l~~~~~~~~~~~~~rP~~~~~il~G~d~-~g~~L~~id~~G~~~~~~-~~a~G~gs~~~~~~L~~~~~~~~~~~ea 187 (222)
+|++|+++++.. + .+||+|++||||||+ .||+||++||.|++.++. ++|+|+|++.++++||+.|+++|+++||
T Consensus 82 la~~l~~~ly~~--r--~~P~~v~~ii~G~D~~~~p~Ly~~D~~G~~~~~~~~~a~G~g~~~~~~~Le~~~~~~~s~~ea 157 (195)
T cd03759 82 FSSLISSLLYEK--R--FGPYFVEPVVAGLDPDGKPFICTMDLIGCPSIPSDFVVSGTASEQLYGMCESLWRPDMEPDEL 157 (195)
T ss_pred HHHHHHHHHHHh--c--CCCceEEEEEEEEcCCCCEEEEEEcCCCcccccCCEEEEcccHHHHHHHHHhccCCCCCHHHH
Confidence 999999998543 2 579999999999996 469999999999998877 9999999999999999999999999999
Q ss_pred HHHHHHHHHhhhccC-CCCCcEEEEEEeeCCce
Q 027541 188 VHTAILTLKEGFEGQ-ISEKNIEIGIIGEKKEF 219 (222)
Q Consensus 188 ~~l~~~~L~~~~~~d-~~~~~iei~ii~~~~~~ 219 (222)
++++++||+.+.+|| .++.+++|++|+++|..
T Consensus 158 ~~l~~~~l~~~~~rd~~~~~~~~i~ii~~~g~~ 190 (195)
T cd03759 158 FETISQALLSAVDRDALSGWGAVVYIITKDKVT 190 (195)
T ss_pred HHHHHHHHHHHHhhCcccCCceEEEEEcCCcEE
Confidence 999999999999999 59999999999998854
No 26
>TIGR03691 20S_bact_alpha proteasome, alpha subunit, bacterial type. Members of this family are the alpha subunit of the 20S proteasome as found in Actinobacteria such as Mycobacterium, Rhodococcus, and Streptomyces. In most Actinobacteria (an exception is Propionibacterium acnes), the proteasome is accompanied by a system of tagging proteins for degradation with Pup.
Probab=100.00 E-value=7.8e-46 Score=303.15 Aligned_cols=202 Identities=22% Similarity=0.358 Sum_probs=183.2
Q ss_pred eCCCCcc-hhhhhHHHHhccCCcEEEEEeCCEEEEEEeecCCCCcccCCccceEEEecCcEEEEEecChhhHHHHHHHHH
Q 027541 13 FSPSGKL-VQIEHALTAVGSGQTSLGIKASNGVVIATEKKLPSILVDESSVHKIQSLTPNIGVVYSGMGPDFRVLVRKSR 91 (222)
Q Consensus 13 f~p~G~l-~q~eya~~a~~~G~t~vgi~~~dgvvla~d~~~~~~l~~~~~~~KI~~i~~~i~~~~sG~~~D~~~l~~~~~ 91 (222)
.+||.-+ -.-|||.+|+++|+|+|||+++||||||+|++. ++.+|||+|+||++|+++|..+|++.+++.++
T Consensus 7 ~~~~~~~~~~~EYA~kav~~g~T~VGIk~kdgVVLaaek~~-------~~~~KI~~I~d~ig~~~sG~~~D~~~lv~~~r 79 (228)
T TIGR03691 7 VSPEQIMRDRAELARKGIARGRSVVVLTYADGILFVAENPS-------RSLHKISELYDRIGFAAVGKYNEFENLRRAGI 79 (228)
T ss_pred cCHHHHHhhHHHHHHHHHHcCCcEEEEEeCCeEEEEEecCC-------CCcCcEEEecCCEEEEEcCCHHHHHHHHHHHH
Confidence 3667666 557899999999999999999999999999862 46799999999999999999999999999999
Q ss_pred HHHHHHHHHhC-CCCCHHHHHHHHHHHHHHHhhcCceeeeeEeEEEEEEeC--CCCeEEEECCCCceEeee-eEEecCCc
Q 027541 92 KQAEQYHRLYK-EPIPVTQLVRETAAVMQEFTQSGGVRPFGVSLLVAGYDD--KGPQLYQVDPSGSYFSWK-ASAMGKNV 167 (222)
Q Consensus 92 ~~~~~~~~~~~-~~i~~~~la~~l~~~~~~~~~~~~~rP~~~~~il~G~d~--~g~~L~~id~~G~~~~~~-~~a~G~gs 167 (222)
.+++.|++.++ .+++++.+|+.+++.+..++ +++.|||+|++|++|||+ .||+||++||+|++.+++ ++|+|+++
T Consensus 80 ~~a~~~~~~~~~~~~~v~~la~~~tq~~~~~~-~~~~RP~gvs~Li~G~d~~~~gp~Ly~vDpsG~~~~~~~~~aiG~gs 158 (228)
T TIGR03691 80 RYADMRGYSYDRRDVTGRGLANAYAQTLGTIF-TEQQKPYEVEICVAEVGETPDQDQLYRITFDGSIVDERGFVVMGGTT 158 (228)
T ss_pred HHHHHHhhhcCCCCccHHHHHHHHHhhccccc-ccccCcceEEEEEEEEcCCCCCCEEEEECCCCCceeccceEEECCCh
Confidence 99999999998 68999999998888877666 567899999999999984 689999999999999876 89999999
Q ss_pred HHHHHHHHHhccCCCCHHHHHHHHHHHHHhhhc--cC-CCCCcEEEEEEeeCC---ceEEC
Q 027541 168 SNAKTFLEKRYVEEMELDDAVHTAILTLKEGFE--GQ-ISEKNIEIGIIGEKK---EFRQY 222 (222)
Q Consensus 168 ~~~~~~L~~~~~~~~~~~ea~~l~~~~L~~~~~--~d-~~~~~iei~ii~~~~---~~~~~ 222 (222)
+.++++||++|+++|+++||++++++||+.+.+ ++ +++.++||+++++++ +|++|
T Consensus 159 ~~a~~~Lek~y~~~ms~eeai~la~~aL~~~~~~~r~~~~~~~iEv~ii~k~~~~~~f~~l 219 (228)
T TIGR03691 159 EPIATALKESYRDGLSLADALGLAVQALRAGGNGEKRELDAASLEVAVLDRSRPRRAFRRI 219 (228)
T ss_pred HHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHhccccccCCccceEEEEEeCCCCccceEEC
Confidence 999999999999999999999999999999964 44 699999999999754 48875
No 27
>cd03764 proteasome_beta_archeal Archeal proteasome, beta subunit. The 20S proteasome, multisubunit proteolytic complex, is the central enzyme for non-lysosomal protein degradation in both the cytosol and the nucleus. It is composed of 28 subunits arranged as four homoheptameric rings that stack on top of one another forming an elongated alpha-beta-beta-alpha cylinder with a central cavity. The proteasome alpha and beta subunits are both members of the N-terminal nucleophile (Ntn)-hydrolase superfamily. Their N-terminal threonine residues are exposed as a nucleophile in peptide bond hydrolysis. Mammals have 7 alpha and 7 beta proteasome subunits while archaea have one of each.
Probab=100.00 E-value=5.7e-45 Score=290.93 Aligned_cols=185 Identities=28% Similarity=0.464 Sum_probs=176.9
Q ss_pred CcEEEEEeCCEEEEEEeecCCC-CcccCCccceEEEecCcEEEEEecChhhHHHHHHHHHHHHHHHHHHhCCCCCHHHHH
Q 027541 33 QTSLGIKASNGVVIATEKKLPS-ILVDESSVHKIQSLTPNIGVVYSGMGPDFRVLVRKSRKQAEQYHRLYKEPIPVTQLV 111 (222)
Q Consensus 33 ~t~vgi~~~dgvvla~d~~~~~-~l~~~~~~~KI~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~i~~~~la 111 (222)
+|+|||+++||||||+|++.++ .++.+++.+||++|+++++++++|..+|++.+.++++.+++.|+..++++++++.++
T Consensus 1 tt~iai~~~dgvvia~d~r~~~g~~~~~~~~~KI~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~~~~~~l~ 80 (188)
T cd03764 1 TTTVGIVCKDGVVLAADKRASMGNFIASKNVKKIFQIDDKIAMTIAGSVGDAQSLVRILKAEARLYELRRGRPMSIKALA 80 (188)
T ss_pred CcEEEEEeCCEEEEEEccccccCCEEecCCcccEEEccCCEEEEcCccHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHH
Confidence 6899999999999999999997 778788999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhhcCceeeeeEeEEEEEEeCCCCeEEEECCCCceEeeeeEEecCCcHHHHHHHHHhccCCCCHHHHHHHH
Q 027541 112 RETAAVMQEFTQSGGVRPFGVSLLVAGYDDKGPQLYQVDPSGSYFSWKASAMGKNVSNAKTFLEKRYVEEMELDDAVHTA 191 (222)
Q Consensus 112 ~~l~~~~~~~~~~~~~rP~~~~~il~G~d~~g~~L~~id~~G~~~~~~~~a~G~gs~~~~~~L~~~~~~~~~~~ea~~l~ 191 (222)
+++++.+|.+ ++|||+|++||||+|++||+||.+||.|++.+++++|+|+|+++++++|++.|+++|+++||++++
T Consensus 81 ~~i~~~~~~~----~~~P~~~~~lvaG~d~~~~~ly~~D~~G~~~~~~~~a~G~g~~~~~~~L~~~~~~~~~~~ea~~l~ 156 (188)
T cd03764 81 TLLSNILNSS----KYFPYIVQLLIGGVDEEGPHLYSLDPLGSIIEDKYTATGSGSPYAYGVLEDEYKEDMTVEEAKKLA 156 (188)
T ss_pred HHHHHHHHhc----CCCCcEEEEEEEEEeCCCCEEEEECCCCCEEEcCEEEEcCcHHHHHHHHHhcCCCCCCHHHHHHHH
Confidence 9999999886 379999999999999988999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhhhccC-CCCCcEEEEEEeeCCceEEC
Q 027541 192 ILTLKEGFEGQ-ISEKNIEIGIIGEKKEFRQY 222 (222)
Q Consensus 192 ~~~L~~~~~~d-~~~~~iei~ii~~~~~~~~~ 222 (222)
++||+.+.+|| .++++++|++++++| |++|
T Consensus 157 ~~~l~~~~~rd~~~~~~i~i~iv~~~g-~~~~ 187 (188)
T cd03764 157 IRAIKSAIERDSASGDGIDVVVITKDG-YKEL 187 (188)
T ss_pred HHHHHHHHhhcCCCCCcEEEEEECCCC-eEeC
Confidence 99999999998 599999999999988 7654
No 28
>cd03757 proteasome_beta_type_1 proteasome beta type-1 subunit. The 20S proteasome, multisubunit proteolytic complex, is the central enzyme of nonlysosomal protein degradation in both the cytosol and nucleus. It is composed of 28 subunits arranged as four homoheptameric rings that stack on top of one another forming an elongated alpha-beta-beta-alpha cylinder with a central cavity. The proteasome alpha and beta subunits are members of the N-terminal nucleophile (Ntn)-hydrolase superfamily. Their N-terminal threonine residues are exposed as a nucleophile in peptide bond hydrolysis. Mammals have 7 alpha and 7 beta proteasome subunits while archaea have one of each.
Probab=100.00 E-value=1.2e-44 Score=294.05 Aligned_cols=187 Identities=22% Similarity=0.260 Sum_probs=175.1
Q ss_pred hccCCcEEEEEeCCEEEEEEeecCCCCc-ccCCccceEEEecCcEEEEEecChhhHHHHHHHHHHHHHHHHHHhCCCCCH
Q 027541 29 VGSGQTSLGIKASNGVVIATEKKLPSIL-VDESSVHKIQSLTPNIGVVYSGMGPDFRVLVRKSRKQAEQYHRLYKEPIPV 107 (222)
Q Consensus 29 ~~~G~t~vgi~~~dgvvla~d~~~~~~l-~~~~~~~KI~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~i~~ 107 (222)
+++|+|+|||+++||||||+|++.++.+ +.+++.+||++|+++++++++|..+|++.+.++++.+++.|++.+++++++
T Consensus 5 ~~~G~Tvigik~~dgVvlaaD~r~~~~~~~~~~~~~KI~~I~~~i~~~~sG~~aD~~~l~~~~r~~~~~~~~~~g~~i~~ 84 (212)
T cd03757 5 TDNGGTVLAIAGNDFAVIAGDTRLSEGYSILSRDSPKIFKLTDKCVLGSSGFQADILALTKRLKARIKMYKYSHNKEMST 84 (212)
T ss_pred cCCCccEEEEEcCCEEEEEECCccccCCEeEeCCCCeEEEcCCCEEEEccchHHHHHHHHHHHHHHHHHHhHHhCCCCCH
Confidence 4689999999999999999999999765 557899999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHhhcCceeeeeEeEEEEEEeC-CCCeEEEECCCCceEeeeeEEecCCcHHHHHHHHHhcc-------
Q 027541 108 TQLVRETAAVMQEFTQSGGVRPFGVSLLVAGYDD-KGPQLYQVDPSGSYFSWKASAMGKNVSNAKTFLEKRYV------- 179 (222)
Q Consensus 108 ~~la~~l~~~~~~~~~~~~~rP~~~~~il~G~d~-~g~~L~~id~~G~~~~~~~~a~G~gs~~~~~~L~~~~~------- 179 (222)
+.++++++++++.++ .+||++++||||||+ .+|+||.+||.|++.+++++|+|+|+++++++||+.|+
T Consensus 85 ~~la~~ls~~ly~~R----~~P~~~~~iiaG~D~~~~p~Ly~~D~~G~~~~~~~~a~G~g~~~~~~~Le~~~~~~~~~~~ 160 (212)
T cd03757 85 EAIAQLLSTILYSRR----FFPYYVFNILAGIDEEGKGVVYSYDPVGSYERETYSAGGSASSLIQPLLDNQVGRKNQNNV 160 (212)
T ss_pred HHHHHHHHHHHHhhc----CCCeEEEEEEEEEcCCCCEEEEEEcCccCeeecCEEEEeecHHHHHHHHHHHHHhhccCcC
Confidence 999999999996532 579999999999996 46999999999999999999999999999999999985
Q ss_pred --CCCCHHHHHHHHHHHHHhhhccC-CCCCcEEEEEEeeCCce
Q 027541 180 --EEMELDDAVHTAILTLKEGFEGQ-ISEKNIEIGIIGEKKEF 219 (222)
Q Consensus 180 --~~~~~~ea~~l~~~~L~~~~~~d-~~~~~iei~ii~~~~~~ 219 (222)
++||++||++++.+||+.+.+|| .++++++|++|+++|..
T Consensus 161 ~~~~ms~eea~~l~~~~l~~~~~rd~~sg~~i~i~iit~~g~~ 203 (212)
T cd03757 161 ERTPLSLEEAVSLVKDAFTSAAERDIYTGDSLEIVIITKDGIE 203 (212)
T ss_pred CCCCCCHHHHHHHHHHHHHHHHHhCcccCCCEEEEEEcCCCEE
Confidence 89999999999999999999999 59999999999999853
No 29
>TIGR03690 20S_bact_beta proteasome, beta subunit, bacterial type. Members of this family are the beta subunit of the 20S proteasome as found in Actinobacteria such as Mycobacterium, Rhodococcus, and Streptomyces. In Streptomyces, maturation during proteasome assembly was shown to remove a 53-amino acid propeptide. Most of the length of the propeptide is not included in this model.
Probab=100.00 E-value=1.5e-44 Score=294.82 Aligned_cols=190 Identities=21% Similarity=0.295 Sum_probs=175.4
Q ss_pred cCCcEEEEEeCCEEEEEEeecCCC-CcccCCccceEEEecCcEEEEEecChhhHHHHHHHHHHHHHHHHHHhCCCCCHHH
Q 027541 31 SGQTSLGIKASNGVVIATEKKLPS-ILVDESSVHKIQSLTPNIGVVYSGMGPDFRVLVRKSRKQAEQYHRLYKEPIPVTQ 109 (222)
Q Consensus 31 ~G~t~vgi~~~dgvvla~d~~~~~-~l~~~~~~~KI~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~i~~~~ 109 (222)
+|+|+|||+++||||||+|++.++ .++.+++.+|||+|++|++|+++|..+|++.+.++++.+++.|+++++++++++.
T Consensus 1 ~G~T~igi~~kdgVvlaad~r~~~g~~~~~~~~~KI~~i~~~i~~~~sG~~aD~~~l~~~~r~~~~~~~~~~~~~i~~~~ 80 (219)
T TIGR03690 1 HGTTIVALTYPGGVLMAGDRRATQGNMIASRDVEKVYPTDEYSAVGIAGTAGLAIELVRLFQVELEHYEKIEGVPLTLDG 80 (219)
T ss_pred CCcEEEEEEECCEEEEEECCccccCcEEEcCCcceEEEcCCcEEEEecccHHHHHHHHHHHHHHHHHHHHHHCCCCCHHH
Confidence 489999999999999999999997 7888889999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhhcCceeeeeEeEEEEEEeC--CCCeEEEECCCCc-eEeeeeEEecCCcHHHHHHHHHhccCCCCHHH
Q 027541 110 LVRETAAVMQEFTQSGGVRPFGVSLLVAGYDD--KGPQLYQVDPSGS-YFSWKASAMGKNVSNAKTFLEKRYVEEMELDD 186 (222)
Q Consensus 110 la~~l~~~~~~~~~~~~~rP~~~~~il~G~d~--~g~~L~~id~~G~-~~~~~~~a~G~gs~~~~~~L~~~~~~~~~~~e 186 (222)
++++|++++|.++ ...+|||++++||||||+ .+|+||++||.|+ +.+++++|+|+|+++++++||+.|+++||.+|
T Consensus 81 la~~ls~~~~~~~-~~~~rp~~v~~iiaG~D~~~~~~~Ly~~Dp~G~~~~~~~~~a~G~g~~~a~~~Le~~~~~~ms~ee 159 (219)
T TIGR03690 81 KANRLAAMVRGNL-PAAMQGLAVVPLLAGYDLDAGAGRIFSYDVTGGRYEERGYHAVGSGSVFAKGALKKLYSPDLDEDD 159 (219)
T ss_pred HHHHHHHHHHhhh-hhccCCceEEEEEEEECCCCCCcEEEEEeCCCCeeecCCeEEEeccHHHHHHHHHhcCCCCcCHHH
Confidence 9999999999877 445899999999999996 4799999999995 66778999999999999999999999999999
Q ss_pred HHHHHHHHHHhhhccCC-CCCc-------EEEEEEeeCCceEEC
Q 027541 187 AVHTAILTLKEGFEGQI-SEKN-------IEIGIIGEKKEFRQY 222 (222)
Q Consensus 187 a~~l~~~~L~~~~~~d~-~~~~-------iei~ii~~~~~~~~~ 222 (222)
|++++.+||+.+.++|. +++. +||++++++| |++|
T Consensus 160 ai~l~~~al~~~~~~d~~s~~~~~~~~~~~ei~ii~~~g-~~~l 202 (219)
T TIGR03690 160 ALRVAVEALYDAADDDSATGGPDLVRGIYPTVVVITADG-ARRV 202 (219)
T ss_pred HHHHHHHHHHHHHhcccccCCcccccccccEEEEEccCc-eEEc
Confidence 99999999999999985 5443 3999998666 7664
No 30
>PTZ00488 Proteasome subunit beta type-5; Provisional
Probab=100.00 E-value=1.9e-44 Score=298.21 Aligned_cols=189 Identities=19% Similarity=0.285 Sum_probs=176.2
Q ss_pred HhccCCcEEEEEeCCEEEEEEeecCCC-CcccCCccceEEEecCcEEEEEecChhhHHHHHHHHHHHHHHHHHHhCCCCC
Q 027541 28 AVGSGQTSLGIKASNGVVIATEKKLPS-ILVDESSVHKIQSLTPNIGVVYSGMGPDFRVLVRKSRKQAEQYHRLYKEPIP 106 (222)
Q Consensus 28 a~~~G~t~vgi~~~dgvvla~d~~~~~-~l~~~~~~~KI~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~i~ 106 (222)
.+.+|+|+|||+++||||||+|++.+. .++.+++.+||++|++|++++++|..+|++.+.++++.+++.|+++++++|+
T Consensus 35 ~~~~G~T~IgIk~kdgVvlAaD~r~~~g~li~~~~~~KI~~I~~~i~~~~sG~~aD~~~l~~~lr~~~~~y~~~~g~~is 114 (247)
T PTZ00488 35 EFAHGTTTLAFKYGGGIIIAVDSKATAGPYIASQSVKKVIEINPTLLGTMAGGAADCSFWERELAMQCRLYELRNGELIS 114 (247)
T ss_pred ccCCCceEEEEEeCCEEEEEEecCcccCCEEEcCCcCceEEcCCCEEEEeCcCHHHHHHHHHHHHHHHHHHHHHHCCCCC
Confidence 357899999999999999999999985 7888899999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHhhcCceeeeeEeEEEEEEeCCCCeEEEECCCCceEeeeeEEecCCcHHHHHHHHHhccCCCCHHH
Q 027541 107 VTQLVRETAAVMQEFTQSGGVRPFGVSLLVAGYDDKGPQLYQVDPSGSYFSWKASAMGKNVSNAKTFLEKRYVEEMELDD 186 (222)
Q Consensus 107 ~~~la~~l~~~~~~~~~~~~~rP~~~~~il~G~d~~g~~L~~id~~G~~~~~~~~a~G~gs~~~~~~L~~~~~~~~~~~e 186 (222)
++.+|++|++++|.++ ..|+.+++|+||||++||+||++||.|++.+++++|+|+|+.+++++||+.|+++|+.+|
T Consensus 115 v~~la~~ls~~l~~~R----~~~~~v~~iiaG~D~~gp~Ly~vDp~Gs~~~~~~~a~G~gs~~~~~~Le~~~k~dms~eE 190 (247)
T PTZ00488 115 VAAASKILANIVWNYK----GMGLSMGTMICGWDKKGPGLFYVDNDGTRLHGNMFSCGSGSTYAYGVLDAGFKWDLNDEE 190 (247)
T ss_pred HHHHHHHHHHHHHhcC----CCCeeEEEEEEEEeCCCCEEEEEcCCcceeecCCEEEccCHHHHHHHHHhcCcCCCCHHH
Confidence 9999999999998762 224555589999999899999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhhhccC-CCCCcEEEEEEeeCCceEE
Q 027541 187 AVHTAILTLKEGFEGQ-ISEKNIEIGIIGEKKEFRQ 221 (222)
Q Consensus 187 a~~l~~~~L~~~~~~d-~~~~~iei~ii~~~~~~~~ 221 (222)
|++++++||+.+.+|| .++.+++|++|+++| |+.
T Consensus 191 ai~l~~kal~~~~~Rd~~sg~~~ei~iI~k~g-~~~ 225 (247)
T PTZ00488 191 AQDLGRRAIYHATFRDAYSGGAINLYHMQKDG-WKK 225 (247)
T ss_pred HHHHHHHHHHHHHHhccccCCCeEEEEEcCCc-cEE
Confidence 9999999999999999 599999999999887 544
No 31
>cd03763 proteasome_beta_type_7 proteasome beta type-7 subunit. The 20S proteasome, multisubunit proteolytic complex, is the central enzyme of nonlysosomal protein degradation in both the cytosol and nucleus. It is composed of 28 subunits arranged as four homoheptameric rings that stack on top of one another forming an elongated alpha-beta-beta-alpha cylinder with a central cavity. The proteasome alpha and beta subunits are members of the N-terminal nucleophile (Ntn)-hydrolase superfamily. Their N-terminal threonine residues are exposed as a nucleophile in peptide bond hydrolysis. Mammals have 7 alpha and 7 beta proteasome subunits while archaea have one of each.
Probab=100.00 E-value=3.4e-44 Score=286.71 Aligned_cols=183 Identities=21% Similarity=0.315 Sum_probs=174.1
Q ss_pred CcEEEEEeCCEEEEEEeecCCC-CcccCCccceEEEecCcEEEEEecChhhHHHHHHHHHHHHHHHHHHhCCCCCHHHHH
Q 027541 33 QTSLGIKASNGVVIATEKKLPS-ILVDESSVHKIQSLTPNIGVVYSGMGPDFRVLVRKSRKQAEQYHRLYKEPIPVTQLV 111 (222)
Q Consensus 33 ~t~vgi~~~dgvvla~d~~~~~-~l~~~~~~~KI~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~i~~~~la 111 (222)
+|+|||+++||||||+|+|.++ .++.+++.+|||+|+++++++++|..+|++.+.+.++.+++.|+++++++++++.++
T Consensus 1 tt~igi~~~dgvvlaad~r~~~g~~~~~~~~~Ki~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~~~~~~~a 80 (189)
T cd03763 1 TTIVGVVFKDGVVLGADTRATEGPIVADKNCEKIHYIAPNIYCCGAGTAADTEAVTNMISSNLELHRLNTGRKPRVVTAL 80 (189)
T ss_pred CeEEEEEECCeEEEEEcCCcccCceEEcCCccceEEecCCEEEEcCccHHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHH
Confidence 5899999999999999999997 577788999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhhcCceeeeeEeEEEEEEeCCCCeEEEECCCCceEeeeeEEecCCcHHHHHHHHHhccCCCCHHHHHHHH
Q 027541 112 RETAAVMQEFTQSGGVRPFGVSLLVAGYDDKGPQLYQVDPSGSYFSWKASAMGKNVSNAKTFLEKRYVEEMELDDAVHTA 191 (222)
Q Consensus 112 ~~l~~~~~~~~~~~~~rP~~~~~il~G~d~~g~~L~~id~~G~~~~~~~~a~G~gs~~~~~~L~~~~~~~~~~~ea~~l~ 191 (222)
++|++.+|.++ .||+|++||||||++||+||.+||.|++.+++++|+|++++.++++|++.|+|+||++||++++
T Consensus 81 ~~l~~~l~~~~-----~p~~v~~ivaG~d~~g~~ly~~d~~G~~~~~~~~a~G~~~~~~~~~L~~~~~~~ls~~ea~~l~ 155 (189)
T cd03763 81 TMLKQHLFRYQ-----GHIGAALVLGGVDYTGPHLYSIYPHGSTDKLPFVTMGSGSLAAMSVLEDRYKPDMTEEEAKKLV 155 (189)
T ss_pred HHHHHHHHHcC-----CccceeEEEEeEcCCCCEEEEECCCCCEEecCEEEEcCCHHHHHHHHHhhcCCCCCHHHHHHHH
Confidence 99999998763 3999999999999889999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhhhccCC-CCCcEEEEEEeeCCceE
Q 027541 192 ILTLKEGFEGQI-SEKNIEIGIIGEKKEFR 220 (222)
Q Consensus 192 ~~~L~~~~~~d~-~~~~iei~ii~~~~~~~ 220 (222)
++||+.+.+||. ++.+++|++|+++|...
T Consensus 156 ~~~l~~~~~rd~~~~~~~~v~ii~~~g~~~ 185 (189)
T cd03763 156 CEAIEAGIFNDLGSGSNVDLCVITKDGVEY 185 (189)
T ss_pred HHHHHHHHHhcCcCCCceEEEEEcCCcEEE
Confidence 999999999994 99999999999998543
No 32
>cd03762 proteasome_beta_type_6 proteasome beta type-6 subunit. The 20S proteasome, multisubunit proteolytic complex, is the central enzyme of nonlysosomal protein degradation in both the cytosol and nucleus. It is composed of 28 subunits arranged as four homoheptameric rings that stack on top of one another forming an elongated alpha-beta-beta-alpha cylinder with a central cavity. The proteasome alpha and beta subunits are members of the N-terminal nucleophile (Ntn)-hydrolase superfamily. Their N-terminal threonine residues are exposed as a nucleophile in peptide bond hydrolysis. Mammals have 7 alpha and 7 beta proteasome subunits while archaea have one of each.
Probab=100.00 E-value=5.1e-44 Score=285.45 Aligned_cols=184 Identities=18% Similarity=0.251 Sum_probs=174.7
Q ss_pred CcEEEEEeCCEEEEEEeecCCC-CcccCCccceEEEecCcEEEEEecChhhHHHHHHHHHHHHHHHHHHhCCCCCHHHHH
Q 027541 33 QTSLGIKASNGVVIATEKKLPS-ILVDESSVHKIQSLTPNIGVVYSGMGPDFRVLVRKSRKQAEQYHRLYKEPIPVTQLV 111 (222)
Q Consensus 33 ~t~vgi~~~dgvvla~d~~~~~-~l~~~~~~~KI~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~i~~~~la 111 (222)
+|+|||+++||||||+|++.++ .++.+++.+||++|++|++++++|..+|++.+.++++.+++.|+..++++++++.++
T Consensus 1 ~t~igi~~~dgVvla~D~r~~~g~~~~~~~~~Ki~~i~~~i~~~~sG~~~D~~~l~~~l~~~~~~~~~~~~~~~~~~~~a 80 (188)
T cd03762 1 TTIIAVEYDGGVVLGADSRTSTGSYVANRVTDKLTQLHDRIYCCRSGSAADTQAIADYVRYYLDMHSIELGEPPLVKTAA 80 (188)
T ss_pred CeEEEEEECCeEEEEEcccccCCceEEcCCcccEEEccCCEEEEecccHHHHHHHHHHHHHHHHHhHHhhCCCCCHHHHH
Confidence 5899999999999999999987 677788999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhhcCceeeeeEeEEEEEEeC-CCCeEEEECCCCceEeeeeEEecCCcHHHHHHHHHhccCCCCHHHHHHH
Q 027541 112 RETAAVMQEFTQSGGVRPFGVSLLVAGYDD-KGPQLYQVDPSGSYFSWKASAMGKNVSNAKTFLEKRYVEEMELDDAVHT 190 (222)
Q Consensus 112 ~~l~~~~~~~~~~~~~rP~~~~~il~G~d~-~g~~L~~id~~G~~~~~~~~a~G~gs~~~~~~L~~~~~~~~~~~ea~~l 190 (222)
+++++++|.++ |||++++||||+|+ +||+||.+||.|++.+++++++|+++++++++|++.|+++|+++||+++
T Consensus 81 ~~l~~~~~~~~-----~~~~~~~ii~G~d~~~gp~ly~~d~~G~~~~~~~~~~G~g~~~~~~~Le~~~~~~~s~~ea~~l 155 (188)
T cd03762 81 SLFKNLCYNYK-----EMLSAGIIVAGWDEQNGGQVYSIPLGGMLIRQPFAIGGSGSTYIYGYVDANYKPGMTLEECIKF 155 (188)
T ss_pred HHHHHHHHhcc-----ccceeeEEEEEEcCCCCcEEEEECCCCCEEecCEEEEcccHHHHHHHHHhcCCCCCCHHHHHHH
Confidence 99999998774 78999999999996 7899999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhhhccC-CCCCcEEEEEEeeCCceEE
Q 027541 191 AILTLKEGFEGQ-ISEKNIEIGIIGEKKEFRQ 221 (222)
Q Consensus 191 ~~~~L~~~~~~d-~~~~~iei~ii~~~~~~~~ 221 (222)
+++||+.+.+|| .++++++|++|+++|..+.
T Consensus 156 ~~~al~~~~~rd~~~~~~~~i~~i~~~g~~~~ 187 (188)
T cd03762 156 VKNALSLAMSRDGSSGGVIRLVIITKDGVERK 187 (188)
T ss_pred HHHHHHHHHHhccccCCCEEEEEECCCCEEEe
Confidence 999999999999 5999999999999886543
No 33
>cd03765 proteasome_beta_bacterial Bacterial proteasome, beta subunit. The 20S proteasome, multisubunit proteolytic complex, is the central enzyme of nonlysosomal protein degradation in both the cytosol and nucleus. It is composed of 28 subunits arranged as four homoheptameric rings that stack on top of one another forming an elongated alpha-beta-beta-alpha cylinder with a central cavity. The proteasome alpha and beta subunits are members of the N-terminal nucleophile (Ntn)-hydrolase superfamily. Their N-terminal threonine residues are exposed as a nucleophile in peptide bond hydrolysis. Mammals have 7 alpha and 7 beta proteasome subunits while archaea have one of each.
Probab=100.00 E-value=4.9e-44 Score=292.98 Aligned_cols=186 Identities=16% Similarity=0.239 Sum_probs=171.2
Q ss_pred CcEEEEEeCCEEEEEEeecCCCCcccCCccceEEEec----CcEEEEEecChhhHHHHHHHHHHHHHHHHHHhCC-CCCH
Q 027541 33 QTSLGIKASNGVVIATEKKLPSILVDESSVHKIQSLT----PNIGVVYSGMGPDFRVLVRKSRKQAEQYHRLYKE-PIPV 107 (222)
Q Consensus 33 ~t~vgi~~~dgvvla~d~~~~~~l~~~~~~~KI~~i~----~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~-~i~~ 107 (222)
+-+|||+++||||||+|+|.+++++..++.+||++|+ +||+|+.||..+|++.+.+++|.+++.|++++++ ++++
T Consensus 1 ~~~vGIk~kdGVVLaadkr~~~~l~~~~~~~KI~~I~~~~d~~I~~~~sG~~aD~~~l~~~~r~~~~~~~~~~g~~~~~v 80 (236)
T cd03765 1 TYCLGIKLDAGLVFASDSRTNAGVDNISTYRKMFVFSVPGERVIVLLTAGNLATTQAVISLLQRDLEDPEETNLLNAPTM 80 (236)
T ss_pred CeEEEEEeCCeEEEEEccCccCCCccccccceEEEecCCCCCEEEEEcCCcHHHHHHHHHHHHHHHHhhHHhhCCCCCCH
Confidence 3589999999999999999988877666899999998 8999999999999999999999999999999999 8999
Q ss_pred HHHHHHHHHHHHH-HhhcCc-----eeeeeEeEEEEEEeC-CCCeEEEECCCCceEee----eeEEecCCcHHHHHHHHH
Q 027541 108 TQLVRETAAVMQE-FTQSGG-----VRPFGVSLLVAGYDD-KGPQLYQVDPSGSYFSW----KASAMGKNVSNAKTFLEK 176 (222)
Q Consensus 108 ~~la~~l~~~~~~-~~~~~~-----~rP~~~~~il~G~d~-~g~~L~~id~~G~~~~~----~~~a~G~gs~~~~~~L~~ 176 (222)
+.+|+++++++++ ++++.+ .|||+|++|+||||+ .||+||++||+|++.++ +++|+|. ++.++++||+
T Consensus 81 ~~la~~i~~~l~~~~~q~~~~~~~~~rp~gvslIigG~D~~~Gp~LY~idpsG~~~e~~a~~~~~AiG~-~~~a~~~Lek 159 (236)
T cd03765 81 FDAARYVGETLREVQEQDREALKKAGIDFSASFILGGQIKGEEPRLFLIYPQGNFIEATPDTPFLQIGE-TKYGKPILDR 159 (236)
T ss_pred HHHHHHHHHHHHHHHhhcccccccCCcceEEEEEEEeEECCCCCEEEEECCCCCEEeecCCCceeeeCC-chhhHHHHHH
Confidence 9999999998654 555554 489999999999994 78999999999999998 5689995 7999999999
Q ss_pred hccCCCCHHHHHHHHHHHHHhhhccC-CCCCcEEEEEEeeCCce
Q 027541 177 RYVEEMELDDAVHTAILTLKEGFEGQ-ISEKNIEIGIIGEKKEF 219 (222)
Q Consensus 177 ~~~~~~~~~ea~~l~~~~L~~~~~~d-~~~~~iei~ii~~~~~~ 219 (222)
.|+++||+|||++++++||+++++|| .++++|+|++|+++|.-
T Consensus 160 ~yk~~ms~eeai~la~~al~~a~~rd~~sg~~iev~vI~k~G~~ 203 (236)
T cd03765 160 VITPDTSLEDAAKCALVSMDSTMRSNLSVGPPLDLLVYERDSLQ 203 (236)
T ss_pred hcCCCCCHHHHHHHHHHHHHHHHHhcCCCCCCEEEEEEECCCee
Confidence 99999999999999999999999999 59999999999999853
No 34
>PF00227 Proteasome: Proteasome subunit; InterPro: IPR001353 ATP-dependent protease complexes are present in all three kingdoms of life, where they rid the cell of misfolded or damaged proteins and control the level of certain regulatory proteins. They include the proteasome in Eukaryotes, Archaea, and Actinomycetales and the HslVU (ClpQY, clpXP) complex in other eubacteria. Genes homologous to eubacterial HslV (ClpQ) and HslU (ClpY, clpX) have also been demonstrated in to be present in the genome of trypanosomatid protozoa []. The proteasome (or macropain) (3.4.25.1 from EC) [, , , , ] is a eukaryotic and archaeal multicatalytic proteinase complex that seems to be involved in an ATP/ubiquitin-dependent nonlysosomal proteolytic pathway. In eukaryotes the proteasome is composed of about 28 distinct subunits which form a highly ordered ring-shaped structure (20S ring) of about 700 kDa. Most proteasome subunits can be classified, on the basis on sequence similarities into two groups, alpha (A) and beta (B). The prokaryotic ATP-dependent proteasome is coded for by the heat-shock locus VU (HslVU). It consists of HslV, the protease (MEROPS peptidase subfamily T1B), and HslU, IPR004491 from INTERPRO, the ATPase and chaperone belonging to the AAA/Clp/Hsp100 family. The crystal structure of Thermotoga maritima HslV has been determined to 2.1-A resolution. The structure of the dodecameric enzyme is well conserved compared to those from Escherichia coli and Haemophilus influenzae [, ]. This entry contains threonine peptidases and non-peptidase homologs belong to MEROPS peptidase family T1 (proteasome family, clan PB(T)). The family consists of the protease components of the archaeal and bacterial proteasomes and the alpha and beta subunits of the eukaryotic proteasome. ; GO: 0004298 threonine-type endopeptidase activity, 0051603 proteolysis involved in cellular protein catabolic process, 0005839 proteasome core complex; PDB: 3KRD_1 3H6F_M 2FHH_F 3HF9_F 2FHG_D 3HFA_B 3H6I_K 3MI0_A 3MFE_1 3MKA_F ....
Probab=100.00 E-value=1.2e-43 Score=283.21 Aligned_cols=185 Identities=41% Similarity=0.722 Sum_probs=175.7
Q ss_pred hccCCcEEEEEeCCEEEEEEeecCCC--CcccCCccceEEEecCcEEEEEecChhhHHHHHHHHHHHHHHHHHHhCCCCC
Q 027541 29 VGSGQTSLGIKASNGVVIATEKKLPS--ILVDESSVHKIQSLTPNIGVVYSGMGPDFRVLVRKSRKQAEQYHRLYKEPIP 106 (222)
Q Consensus 29 ~~~G~t~vgi~~~dgvvla~d~~~~~--~l~~~~~~~KI~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~i~ 106 (222)
+++|+|+|||+++||||||+|++.+. .+..+++.+|||+|++|++++++|..+|++.+.++++.++..|++.++.+++
T Consensus 1 v~~G~t~vgi~~~dgvvla~d~~~~~g~~~~~~~~~~ki~~i~~~i~~~~sG~~~D~~~l~~~l~~~~~~~~~~~~~~~~ 80 (190)
T PF00227_consen 1 VNNGTTVVGIKGKDGVVLAADKRISYGSKLRSPNTVDKIFKINDNIIIGFSGLTADFQYLIRRLREEAQEYRFSYGRPIS 80 (190)
T ss_dssp HHTSBEEEEEEESSEEEEEEEEEEEETTEEEESSTSSSEEEEETTEEEEEEESHHHHHHHHHHHHHHHHHHHHHHSSGTC
T ss_pred CCCCeEEEEEEECCEEEEEEccccccccccccccccceeeeccCcceeeccccccchHHHHhhhcccchhhhhccCcccc
Confidence 57899999999999999999999983 4445555899999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHhhcCceeeeeEeEEEEEEeCCC-CeEEEECCCCceEee-eeEEecCCcHHHHHHHHHhccCCCCH
Q 027541 107 VTQLVRETAAVMQEFTQSGGVRPFGVSLLVAGYDDKG-PQLYQVDPSGSYFSW-KASAMGKNVSNAKTFLEKRYVEEMEL 184 (222)
Q Consensus 107 ~~~la~~l~~~~~~~~~~~~~rP~~~~~il~G~d~~g-~~L~~id~~G~~~~~-~~~a~G~gs~~~~~~L~~~~~~~~~~ 184 (222)
++.+++.++++++.++.+.++||+++++|+||||+++ |+||.+||+|++.++ +++|+|+|++.++++|++.|+++|++
T Consensus 81 ~~~l~~~~~~~~~~~~~~~~~~p~~~~~li~G~d~~~~~~l~~vd~~G~~~~~~~~~aiG~g~~~~~~~l~~~~~~~~~~ 160 (190)
T PF00227_consen 81 PEYLAKAIASLIQNYTYRSGRRPYGVSLLIAGYDEDGGPQLYSVDPSGSYIECKRFAAIGSGSQFAQPILEKLYKPDLSL 160 (190)
T ss_dssp HHHHHHHHHHHHHHHHHHTTTSTTSEEEEEEEEETTTEEEEEEEETTSEEEEBSSEEEESTTHHHHHHHHHHHHTTTSSH
T ss_pred chhhhhhhHHHHhhhcccccccCccccceeeeeccccccceeeeccccccccccccccchhcchhhhHHHHhhccCCCCH
Confidence 9999999999999999999999999999999999866 999999999999999 69999999999999999999999999
Q ss_pred HHHHHHHHHHHHhhhccC-CCCCcEEEEEE
Q 027541 185 DDAVHTAILTLKEGFEGQ-ISEKNIEIGII 213 (222)
Q Consensus 185 ~ea~~l~~~~L~~~~~~d-~~~~~iei~ii 213 (222)
+||++++.+||+.+.++| .++++++|+||
T Consensus 161 ~ea~~~~~~~l~~~~~~d~~~~~~~~v~vi 190 (190)
T PF00227_consen 161 EEAIELALKALKEAIDRDILSGDNIEVAVI 190 (190)
T ss_dssp HHHHHHHHHHHHHHHHHBTTSTSEEEEEEE
T ss_pred HHHHHHHHHHHHHHHhhCCccCCeEEEEEC
Confidence 999999999999999998 59999999987
No 35
>cd01912 proteasome_beta proteasome beta subunit. The 20S proteasome, multisubunit proteolytic complex, is the central enzyme of nonlysosomal protein degradation in both the cytosol and nucleus. It is composed of 28 subunits arranged as four homoheptameric rings that stack on top of one another forming an elongated alpha-beta-beta-alpha cylinder with a central cavity. The proteasome alpha and beta subunits are members of the N-terminal nucleophile (Ntn)-hydrolase superfamily. Their N-terminal threonine residues are exposed as a nucleophile in peptide bond hydrolysis. Mammals have 7 alpha and 7 beta proteasome subunits while archaea have one of each.
Probab=100.00 E-value=2.9e-43 Score=281.17 Aligned_cols=184 Identities=25% Similarity=0.369 Sum_probs=174.8
Q ss_pred CcEEEEEeCCEEEEEEeecCCCCccc-CCccceEEEecCcEEEEEecChhhHHHHHHHHHHHHHHHHHHhCCCCCHHHHH
Q 027541 33 QTSLGIKASNGVVIATEKKLPSILVD-ESSVHKIQSLTPNIGVVYSGMGPDFRVLVRKSRKQAEQYHRLYKEPIPVTQLV 111 (222)
Q Consensus 33 ~t~vgi~~~dgvvla~d~~~~~~l~~-~~~~~KI~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~i~~~~la 111 (222)
+|+||++++||||||+|++.++.+.. +++.+|||+|+++++++++|..+|++.+.++++.++..|+..++++++++.++
T Consensus 1 tt~i~i~~~dgVvla~d~~~~~~~~~~~~~~~Ki~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~~~~~~l~ 80 (189)
T cd01912 1 TTIVGIKGKDGVVLAADTRASAGSLVASRNFDKIFKISDNILLGTAGSAADTQALTRLLKRNLRLYELRNGRELSVKAAA 80 (189)
T ss_pred CcEEEEEeCCEEEEEEcCCcccCcEEEcCCcCcEEEccCCEEEEccccHHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHH
Confidence 68999999999999999999986544 88999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhhcCceeeeeEeEEEEEEeC-CCCeEEEECCCCceEeeeeEEecCCcHHHHHHHHHhccCCCCHHHHHHH
Q 027541 112 RETAAVMQEFTQSGGVRPFGVSLLVAGYDD-KGPQLYQVDPSGSYFSWKASAMGKNVSNAKTFLEKRYVEEMELDDAVHT 190 (222)
Q Consensus 112 ~~l~~~~~~~~~~~~~rP~~~~~il~G~d~-~g~~L~~id~~G~~~~~~~~a~G~gs~~~~~~L~~~~~~~~~~~ea~~l 190 (222)
+++++.++.+++ |||++++||||+|+ ++|+||.+||.|++.+++++|+|.++++++++|++.|+++|+++||+++
T Consensus 81 ~~l~~~~~~~~~----~P~~~~~iv~G~d~~~~~~l~~id~~G~~~~~~~~a~G~~~~~~~~~Le~~~~~~~s~~ea~~~ 156 (189)
T cd01912 81 NLLSNILYSYRG----FPYYVSLIVGGVDKGGGPFLYYVDPLGSLIEAPFVATGSGSKYAYGILDRGYKPDMTLEEAVEL 156 (189)
T ss_pred HHHHHHHHhcCC----CCeEEEEEEEEEcCCCCeEEEEECCCCCeEecCEEEEcccHHHHHHHHHhccCCCCCHHHHHHH
Confidence 999999988874 89999999999997 7899999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhhhccC-CCCCcEEEEEEeeCCceE
Q 027541 191 AILTLKEGFEGQ-ISEKNIEIGIIGEKKEFR 220 (222)
Q Consensus 191 ~~~~L~~~~~~d-~~~~~iei~ii~~~~~~~ 220 (222)
+.+||+.+.++| .++.+++|++|+++|..+
T Consensus 157 ~~~~l~~~~~~d~~~~~~~~v~vi~~~g~~~ 187 (189)
T cd01912 157 VKKAIDSAIERDLSSGGGVDVAVITKDGVEE 187 (189)
T ss_pred HHHHHHHHHHhcCccCCcEEEEEECCCCEEE
Confidence 999999999998 589999999999998543
No 36
>cd01906 proteasome_protease_HslV proteasome_protease_HslV. This group contains the eukaryotic proteosome alpha and beta subunits and the prokaryotic protease hslV subunit. Proteasomes are large multimeric self-compartmentalizing proteases, involved in the clearance of misfolded proteins, the breakdown of regulatory proteins, and the processing of proteins such as the preparation of peptides for immune presentation. Two main proteasomal types are distinguished by their different tertiary structures: the eukaryotic/archeal 20S proteasome and the prokaryotic proteasome-like heat shock protein encoded by heat shock locus V, hslV. The proteasome core particle is a highly conserved cylindrical structure made up of non-identical subunits that have their active sites on the inner walls of a large central cavity. The proteasome subunits of bacteria, archaea, and eukaryotes all share a conserved Ntn (N terminal nucleophile) hydrolase fold and a catalytic mechanism involving an N-terminal nucleo
Probab=100.00 E-value=4.9e-42 Score=272.17 Aligned_cols=179 Identities=45% Similarity=0.734 Sum_probs=171.2
Q ss_pred CcEEEEEeCCEEEEEEeecCCCCccc-CCccceEEEecCcEEEEEecChhhHHHHHHHHHHHHHHHHHHhCCCCCHHHHH
Q 027541 33 QTSLGIKASNGVVIATEKKLPSILVD-ESSVHKIQSLTPNIGVVYSGMGPDFRVLVRKSRKQAEQYHRLYKEPIPVTQLV 111 (222)
Q Consensus 33 ~t~vgi~~~dgvvla~d~~~~~~l~~-~~~~~KI~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~i~~~~la 111 (222)
+|+|||+++||||||+|++.++.+.. +++.+|||+|+++++++++|..+|++.+.+++++++..|+..++++++++.++
T Consensus 1 tt~igi~~~dgvvla~d~~~~~~~~~~~~~~~Ki~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~~~~~~l~ 80 (182)
T cd01906 1 TTIVGIKGKDGVVLAADKRVTSGLLVASSTVEKIFKIDDHIGCAFAGLAADAQTLVERLRKEAQLYRLRYGEPIPVEALA 80 (182)
T ss_pred CcEEEEEeCCEEEEEEecccCCcCeecCCCcceEEEECCCEEEEEeeCHHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHH
Confidence 68999999999999999999875544 78999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhhcCceeeeeEeEEEEEEeC-CCCeEEEECCCCceEeeeeEEecCCcHHHHHHHHHhccCCCCHHHHHHH
Q 027541 112 RETAAVMQEFTQSGGVRPFGVSLLVAGYDD-KGPQLYQVDPSGSYFSWKASAMGKNVSNAKTFLEKRYVEEMELDDAVHT 190 (222)
Q Consensus 112 ~~l~~~~~~~~~~~~~rP~~~~~il~G~d~-~g~~L~~id~~G~~~~~~~~a~G~gs~~~~~~L~~~~~~~~~~~ea~~l 190 (222)
+++++++|.++++ .|||++++|+||+|+ .||+||.+||.|++.+++++|+|++++.++++|++.|+++|+++||+++
T Consensus 81 ~~l~~~~~~~~~~--~~p~~~~~lv~G~d~~~~~~Ly~id~~G~~~~~~~~a~G~g~~~~~~~L~~~~~~~~s~~ea~~l 158 (182)
T cd01906 81 KLLANLLYEYTQS--LRPLGVSLLVAGVDEEGGPQLYSVDPSGSYIEYKATAIGSGSQYALGILEKLYKPDMTLEEAIEL 158 (182)
T ss_pred HHHHHHHHHhCCC--ccChheEEEEEEEeCCCCcEEEEECCCCCEeeccEEEECCCcHHHHHHHHHHccCCCCHHHHHHH
Confidence 9999999999876 799999999999997 7899999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhhhccCC-CCCcEEEEEE
Q 027541 191 AILTLKEGFEGQI-SEKNIEIGII 213 (222)
Q Consensus 191 ~~~~L~~~~~~d~-~~~~iei~ii 213 (222)
+.+||+.+.+++. ++.+++|++|
T Consensus 159 ~~~~l~~~~~~~~~~~~~~~i~ii 182 (182)
T cd01906 159 ALKALKSALERDLYSGGNIEVAVI 182 (182)
T ss_pred HHHHHHHHHcccCCCCCCEEEEEC
Confidence 9999999999985 8999999875
No 37
>KOG0175 consensus 20S proteasome, regulatory subunit beta type PSMB5/PSMB8/PRE2 [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=3.1e-38 Score=251.70 Aligned_cols=189 Identities=20% Similarity=0.297 Sum_probs=180.5
Q ss_pred hccCCcEEEEEeCCEEEEEEeecCCC-CcccCCccceEEEecCcEEEEEecChhhHHHHHHHHHHHHHHHHHHhCCCCCH
Q 027541 29 VGSGQTSLGIKASNGVVIATEKKLPS-ILVDESSVHKIQSLTPNIGVVYSGMGPDFRVLVRKSRKQAEQYHRLYKEPIPV 107 (222)
Q Consensus 29 ~~~G~t~vgi~~~dgvvla~d~~~~~-~l~~~~~~~KI~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~i~~ 107 (222)
..+|||.+|++++.|||+|+|+|.++ ++|.++.++||.+|+++++-.++|-++|++.+.+.+.++|..|++++++.|++
T Consensus 68 ~~hGTTTLAF~f~~GvivAvDSRAs~G~YIasqtv~KVIeIn~ylLGTmAGgAADCqfWer~L~kecRL~eLRnkeriSV 147 (285)
T KOG0175|consen 68 FAHGTTTLAFKFKGGVIVAVDSRASAGSYIASQTVKKVIEINPYLLGTMAGGAADCQFWERVLAKECRLHELRNKERISV 147 (285)
T ss_pred ecCCceEEEEEecCcEEEEEeccccccceeechhhceeeeechhhhhcccCcchhhHHHHHHHHHHHHHHHHhcCcceeh
Confidence 46899999999999999999999997 79999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHhhcCceeeeeEeEEEEEEeCCCCeEEEECCCCceEeeeeEEecCCcHHHHHHHHHhccCCCCHHHH
Q 027541 108 TQLVRETAAVMQEFTQSGGVRPFGVSLLVAGYDDKGPQLYQVDPSGSYFSWKASAMGKNVSNAKTFLEKRYVEEMELDDA 187 (222)
Q Consensus 108 ~~la~~l~~~~~~~~~~~~~rP~~~~~il~G~d~~g~~L~~id~~G~~~~~~~~a~G~gs~~~~~~L~~~~~~~~~~~ea 187 (222)
...++.|++++++|+-. .+.+..+|+|||+.||.||.+|..|+-...+-+++|+|+.+|+.+|++.|+++|+.|||
T Consensus 148 saASKllsN~~y~YkGm----GLsmGtMi~G~Dk~GP~lyYVDseG~Rl~G~~FSVGSGs~yAYGVLDsgYr~dls~eEA 223 (285)
T KOG0175|consen 148 SAASKLLSNMVYQYKGM----GLSMGTMIAGWDKKGPGLYYVDSEGTRLSGDLFSVGSGSTYAYGVLDSGYRYDLSDEEA 223 (285)
T ss_pred HHHHHHHHHHHhhccCc----chhheeeEeeccCCCCceEEEcCCCCEecCceEeecCCCceeEEeeccCCCCCCCHHHH
Confidence 99999999999988643 37888999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhhhccCC-CCCcEEEEEEeeCCceEE
Q 027541 188 VHTAILTLKEGFEGQI-SEKNIEIGIIGEKKEFRQ 221 (222)
Q Consensus 188 ~~l~~~~L~~~~~~d~-~~~~iei~ii~~~~~~~~ 221 (222)
.+|+++++..++.||. |++.+.++.|+++|-.++
T Consensus 224 ~~L~rrAI~hAThRDaySGG~vnlyHv~edGW~~v 258 (285)
T KOG0175|consen 224 YDLARRAIYHATHRDAYSGGVVNLYHVKEDGWVKV 258 (285)
T ss_pred HHHHHHHHHHHHhcccccCceEEEEEECCccceec
Confidence 9999999999999995 999999999999996553
No 38
>KOG0173 consensus 20S proteasome, regulatory subunit beta type PSMB7/PSMB10/PUP1 [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1.1e-37 Score=247.98 Aligned_cols=189 Identities=22% Similarity=0.372 Sum_probs=178.6
Q ss_pred hHHHHhccCCcEEEEEeCCEEEEEEeecCCC-CcccCCccceEEEecCcEEEEEecChhhHHHHHHHHHHHHHHHHHHhC
Q 027541 24 HALTAVGSGQTSLGIKASNGVVIATEKKLPS-ILVDESSVHKIQSLTPNIGVVYSGMGPDFRVLVRKSRKQAEQYHRLYK 102 (222)
Q Consensus 24 ya~~a~~~G~t~vgi~~~dgvvla~d~~~~~-~l~~~~~~~KI~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~ 102 (222)
-++++.+.|+|++|+.++||||+++|+|.+. +++..++..||+.+.++|+||.+|.++|...+.+.+..+...|++..+
T Consensus 29 k~p~~tkTGTtIvgv~~k~gvIlgADtRaT~G~IvaDKnC~KIH~ia~~IyccGAGtAADte~vt~m~ss~l~Lh~l~t~ 108 (271)
T KOG0173|consen 29 KAPKATKTGTTIVGVIFKDGVILGADTRATEGPIVADKNCEKIHFIAPNIYCCGAGTAADTEMVTRMISSNLELHRLNTG 108 (271)
T ss_pred CCCcccccCcEEEEEEeCCeEEEeecccccCCCeeecchhHHHhhcccceEEccCCchhhHHHHHHHHHHHHHHHHhccC
Confidence 4678889999999999999999999999997 677778999999999999999999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHHHHHHhhcCceeeeeEeEEEEEEeCCCCeEEEECCCCceEeeeeEEecCCcHHHHHHHHHhccCCC
Q 027541 103 EPIPVTQLVRETAAVMQEFTQSGGVRPFGVSLLVAGYDDKGPQLYQVDPSGSYFSWKASAMGKNVSNAKTFLEKRYVEEM 182 (222)
Q Consensus 103 ~~i~~~~la~~l~~~~~~~~~~~~~rP~~~~~il~G~d~~g~~L~~id~~G~~~~~~~~a~G~gs~~~~~~L~~~~~~~~ 182 (222)
+++++-..-+++.+.+..|.-+ .++.+|++|+|+.|||||+|-|.|+....+|.++|+|+..++++||.+|+|+|
T Consensus 109 R~~rVv~A~~mlkQ~LFrYqG~-----IgA~LiiGGvD~TGpHLy~i~phGStd~~Pf~alGSGslaAmsvlEsr~k~dl 183 (271)
T KOG0173|consen 109 RKPRVVTALRMLKQHLFRYQGH-----IGAALILGGVDPTGPHLYSIHPHGSTDKLPFTALGSGSLAAMSVLESRWKPDL 183 (271)
T ss_pred CCCceeeHHHHHHHHHHHhcCc-----ccceeEEccccCCCCceEEEcCCCCcCccceeeeccchHHHHHHHHHhcCccc
Confidence 9999999999988888777433 89999999999999999999999999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHHhhhccCC-CCCcEEEEEEeeCC
Q 027541 183 ELDDAVHTAILTLKEGFEGQI-SEKNIEIGIIGEKK 217 (222)
Q Consensus 183 ~~~ea~~l~~~~L~~~~~~d~-~~~~iei~ii~~~~ 217 (222)
++|||.+|+.+|+.+.+.+|+ |++++++|||++.+
T Consensus 184 t~eea~~Lv~eAi~AGi~nDLgSGsnvdlcVI~~~~ 219 (271)
T KOG0173|consen 184 TKEEAIKLVCEAIAAGIFNDLGSGSNVDLCVITKKG 219 (271)
T ss_pred CHHHHHHHHHHHHHhhhccccCCCCceeEEEEeCCC
Confidence 999999999999999999997 99999999999654
No 39
>KOG0177 consensus 20S proteasome, regulatory subunit beta type PSMB2/PRE1 [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=5e-37 Score=234.99 Aligned_cols=184 Identities=24% Similarity=0.298 Sum_probs=175.6
Q ss_pred CcEEEEEeCCEEEEEEeecCCC-CcccCCccceEEEecCcEEEEEecChhhHHHHHHHHHHHHHHHHHHhCCCCCHHHHH
Q 027541 33 QTSLGIKASNGVVIATEKKLPS-ILVDESSVHKIQSLTPNIGVVYSGMGPDFRVLVRKSRKQAEQYHRLYKEPIPVTQLV 111 (222)
Q Consensus 33 ~t~vgi~~~dgvvla~d~~~~~-~l~~~~~~~KI~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~i~~~~la 111 (222)
.+++||++.|+|++|+|+.... .++..++.+|++.++|++.|+++|..+|+-.+.+++++.++.|+.++|.+++++.+|
T Consensus 2 e~llGIkg~dfvilAsDt~~~~si~~~k~~~dK~~~ls~~~lm~~~Ge~GDt~qF~eyi~~Ni~LYkirnGyeLSp~~aa 81 (200)
T KOG0177|consen 2 ETLLGIKGPDFVILASDTSAARSILVLKDDHDKIHRLSDHILMATVGEAGDTVQFTEYIQKNIQLYKIRNGYELSPSAAA 81 (200)
T ss_pred ceEEEeecCCEEEEeecchhhcceEEecccccceEEeccceeeeeecCCCceehHHHHHHhhhhHHhhhcCCcCCHHHHH
Confidence 4799999999999999998775 566788999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhhcCceeeeeEeEEEEEEeC-CCCeEEEECCCCceEeeeeEEecCCcHHHHHHHHHhccCCCCHHHHHHH
Q 027541 112 RETAAVMQEFTQSGGVRPFGVSLLVAGYDD-KGPQLYQVDPSGSYFSWKASAMGKNVSNAKTFLEKRYVEEMELDDAVHT 190 (222)
Q Consensus 112 ~~l~~~~~~~~~~~~~rP~~~~~il~G~d~-~g~~L~~id~~G~~~~~~~~a~G~gs~~~~~~L~~~~~~~~~~~ea~~l 190 (222)
+++.+.+..+.++ .+||.|++++||+|+ .||.||+||..|+..+.++++.|.++.++.++|++.|+|+||.|||+.+
T Consensus 82 hFtR~~La~~LRs--r~~yqV~~LvaGYd~~~gp~L~~iDyla~~~~vpy~~hGy~~~f~~sIlDr~Y~pdmt~eea~~l 159 (200)
T KOG0177|consen 82 HFTRRELAESLRS--RTPYQVNILVAGYDPEEGPELYYIDYLATLVSVPYAAHGYGSYFCLSILDRYYKPDMTIEEALDL 159 (200)
T ss_pred HHHHHHHHHHHhc--CCCceEEEEEeccCCCCCCceeeehhhhhcccCCcccccchhhhhHHHHHhhhCCCCCHHHHHHH
Confidence 9999999999876 689999999999998 5899999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhhhccC-CCCCcEEEEEEeeCCc
Q 027541 191 AILTLKEGFEGQ-ISEKNIEIGIIGEKKE 218 (222)
Q Consensus 191 ~~~~L~~~~~~d-~~~~~iei~ii~~~~~ 218 (222)
..+|+.++.+|- ++..+|.|.||++||-
T Consensus 160 mkKCv~El~kRlvin~~~f~v~IVdkdGi 188 (200)
T KOG0177|consen 160 MKKCVLELKKRLVINLPGFIVKIVDKDGI 188 (200)
T ss_pred HHHHHHHHHHhcccCCCCcEEEEEcCCCc
Confidence 999999999998 4999999999999984
No 40
>KOG0179 consensus 20S proteasome, regulatory subunit beta type PSMB1/PRE7 [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1.8e-36 Score=235.14 Aligned_cols=188 Identities=23% Similarity=0.309 Sum_probs=175.9
Q ss_pred hccCCcEEEEEeCCEEEEEEeecCCC-CcccCCccceEEEecCcEEEEEecChhhHHHHHHHHHHHHHHHHHHhCCCCCH
Q 027541 29 VGSGQTSLGIKASNGVVIATEKKLPS-ILVDESSVHKIQSLTPNIGVVYSGMGPDFRVLVRKSRKQAEQYHRLYKEPIPV 107 (222)
Q Consensus 29 ~~~G~t~vgi~~~dgvvla~d~~~~~-~l~~~~~~~KI~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~i~~ 107 (222)
..+|+|+|||.+.|++|+|+|||.++ ..|.+++..|||+++|+++++.+|.++|+..|...++.+..+|++.++.+|++
T Consensus 26 ~~NGGT~vaIaG~dFavvA~DTR~s~gy~I~sR~~~Ki~~l~D~~vl~~sGF~aD~l~L~k~i~~r~~~Y~~~h~k~ms~ 105 (235)
T KOG0179|consen 26 EDNGGTTVAIAGEDFAVVAGDTRMSSGYNINSRDQSKIFKLGDNIVLGSSGFYADTLALVKVIKSRIKQYEHDHNKKMSI 105 (235)
T ss_pred ccCCceEEEEcCCceEEEecccccccceeeeccccchheeccCceEEecccchhhHHHHHHHHHHHHHHHhhcccccccH
Confidence 46999999999999999999999987 56889999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHhhcCceeeeeEeEEEEEEeCCC-CeEEEECCCCceEeeeeEEecCCcHHHHHHHHHhcc-------
Q 027541 108 TQLVRETAAVMQEFTQSGGVRPFGVSLLVAGYDDKG-PQLYQVDPSGSYFSWKASAMGKNVSNAKTFLEKRYV------- 179 (222)
Q Consensus 108 ~~la~~l~~~~~~~~~~~~~rP~~~~~il~G~d~~g-~~L~~id~~G~~~~~~~~a~G~gs~~~~~~L~~~~~------- 179 (222)
..+|++|+..++..+ +.||.+..+|+|+|++| +.+|+.||-|++.+..+.|-|+++..++|+|++...
T Consensus 106 ~s~A~lls~~LY~kR----FFPYYv~~ilaGiDeeGKG~VySyDPvGsyer~~~~AgGsa~~mI~PfLDnQi~~kn~~~e 181 (235)
T KOG0179|consen 106 HSAAQLLSTILYSKR----FFPYYVFNILAGIDEEGKGAVYSYDPVGSYERVTCRAGGSAASMIQPFLDNQIGHKNQNLE 181 (235)
T ss_pred HHHHHHHHHHHhhcc----cccceeeeeeecccccCceeEEeecCCcceeeeeeecCCcchhhhhhhhhhhccCcCcccc
Confidence 999999999997553 89999999999999955 999999999999999999999999999999998652
Q ss_pred ----CCCCHHHHHHHHHHHHHhhhccCC-CCCcEEEEEEeeCCceE
Q 027541 180 ----EEMELDDAVHTAILTLKEGFEGQI-SEKNIEIGIIGEKKEFR 220 (222)
Q Consensus 180 ----~~~~~~ea~~l~~~~L~~~~~~d~-~~~~iei~ii~~~~~~~ 220 (222)
+.|++|+|++|+..++..|.+||+ .++.++|+|+++||..+
T Consensus 182 ~~~~~~Ls~e~ai~lv~d~F~SAaERdI~tGD~l~i~I~tk~gV~~ 227 (235)
T KOG0179|consen 182 NAERTPLSLERAIRLVKDAFTSAAERDIYTGDKLEICIITKDGVEV 227 (235)
T ss_pred cCcccccCHHHHHHHHHHHhhhhhhcccccCCcEEEEEEecCCEEE
Confidence 358999999999999999999996 89999999999998643
No 41
>KOG0174 consensus 20S proteasome, regulatory subunit beta type PSMB6/PSMB9/PRE3 [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1.2e-36 Score=233.69 Aligned_cols=188 Identities=21% Similarity=0.297 Sum_probs=178.7
Q ss_pred HhccCCcEEEEEeCCEEEEEEeecCCC-CcccCCccceEEEecCcEEEEEecChhhHHHHHHHHHHHHHHHHHHhCCCCC
Q 027541 28 AVGSGQTSLGIKASNGVVIATEKKLPS-ILVDESSVHKIQSLTPNIGVVYSGMGPDFRVLVRKSRKQAEQYHRLYKEPIP 106 (222)
Q Consensus 28 a~~~G~t~vgi~~~dgvvla~d~~~~~-~l~~~~~~~KI~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~i~ 106 (222)
.+..|+|++|+++++||||++|+|++. .++.++..+|+.+|.|+|+||-||.++|.|.+.+.++..+..|..+++.+++
T Consensus 15 evstGTTImAv~y~gGVvlGaDSRTs~GayvanRvtDKlT~itD~i~cCRSGSAADtQaiaD~~~Y~L~~~~~q~~~~p~ 94 (224)
T KOG0174|consen 15 EVSTGTTIMAVEYDGGVVLGADSRTSTGAYVANRVTDKLTPITDNIYCCRSGSAADTQAIADIVRYHLELYTIQENKPPL 94 (224)
T ss_pred ccccCceEEEEEEcCcEEEeccCCccchHHHHhhhcccceeccccEEEecCCchhhHHHHHHHHHHHHHHhhhhcCCCch
Confidence 367999999999999999999999997 6888999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHhhcCceeeeeEeEEEEEEeC-CCCeEEEECCCCceEeeeeEEecCCcHHHHHHHHHhccCCCCHH
Q 027541 107 VTQLVRETAAVMQEFTQSGGVRPFGVSLLVAGYDD-KGPQLYQVDPSGSYFSWKASAMGKNVSNAKTFLEKRYVEEMELD 185 (222)
Q Consensus 107 ~~~la~~l~~~~~~~~~~~~~rP~~~~~il~G~d~-~g~~L~~id~~G~~~~~~~~a~G~gs~~~~~~L~~~~~~~~~~~ 185 (222)
+...|+.++++.++|+.. +.+.+|+||||+ .|.++|.|---|...+.+++.-|+||.+++.+++..|+|+|++|
T Consensus 95 v~~aA~l~r~~~Y~~re~-----L~AgliVAGwD~~~gGqVY~iplGG~l~rq~~aIgGSGStfIYGf~D~~~r~nMt~E 169 (224)
T KOG0174|consen 95 VHTAASLFREICYNYREM-----LSAGLIVAGWDEKEGGQVYSIPLGGSLTRQPFAIGGSGSTFIYGFCDANWRPNMTLE 169 (224)
T ss_pred HHHHHHHHHHHHHhCHHh-----hhcceEEeecccccCceEEEeecCceEeecceeeccCCceeeeeeehhhcCCCCCHH
Confidence 999999999999988654 789999999998 68999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhhhccC-CCCCcEEEEEEeeCCceE
Q 027541 186 DAVHTAILTLKEGFEGQ-ISEKNIEIGIIGEKKEFR 220 (222)
Q Consensus 186 ea~~l~~~~L~~~~~~d-~~~~~iei~ii~~~~~~~ 220 (222)
|+++++.+++..+++|| .|++.|.+.+|+++|.-|
T Consensus 170 E~~~fvk~Av~lAi~rDGsSGGviR~~~I~~~Gver 205 (224)
T KOG0174|consen 170 ECVRFVKNAVSLAIERDGSSGGVIRLVIINKAGVER 205 (224)
T ss_pred HHHHHHHHHHHHHHhccCCCCCEEEEEEEccCCceE
Confidence 99999999999999999 799999999999998644
No 42
>KOG0185 consensus 20S proteasome, regulatory subunit beta type PSMB4/PRE4 [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=6.1e-34 Score=224.56 Aligned_cols=206 Identities=21% Similarity=0.259 Sum_probs=182.0
Q ss_pred ceeeCCCCcchh------hhhHHHHhccCCcEEEEEeCCEEEEEEeecCCC-CcccCCccceEEEecCcEEEEEecChhh
Q 027541 10 LTTFSPSGKLVQ------IEHALTAVGSGQTSLGIKASNGVVIATEKKLPS-ILVDESSVHKIQSLTPNIGVVYSGMGPD 82 (222)
Q Consensus 10 ~~~f~p~G~l~q------~eya~~a~~~G~t~vgi~~~dgvvla~d~~~~~-~l~~~~~~~KI~~i~~~i~~~~sG~~~D 82 (222)
.++|.|.|...- +...+.++..|+++||++++||||||+|+..+. ++...++++||++++||+++|+||..+|
T Consensus 13 ~~~f~~~~~~m~~a~~~~~qrt~~p~vTGTSVla~ky~~GVviaaD~lgSYGslaR~~nVeRi~kVgdntllG~sGdisD 92 (256)
T KOG0185|consen 13 PGTFYPSGSLMENAGDYPIQRTLNPIVTGTSVLALKYKDGVVIAADTLGSYGSLARYKNVERIFKVGDNTLLGASGDISD 92 (256)
T ss_pred CCcCcCccchhhhccCCCcccccCceeccceEEEEEecCceEEEecccccchhhhhhcCceeeEEecCceEEecCccHHH
Confidence 456778765421 112345566899999999999999999999996 7888899999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHH-HHhCCCCCHHHHHHHHHHHHHHHhhcCceeeeeEeEEEEEEeCCC-CeEEEECCCCceEeeee
Q 027541 83 FRVLVRKSRKQAEQYH-RLYKEPIPVTQLVRETAAVMQEFTQSGGVRPFGVSLLVAGYDDKG-PQLYQVDPSGSYFSWKA 160 (222)
Q Consensus 83 ~~~l~~~~~~~~~~~~-~~~~~~i~~~~la~~l~~~~~~~~~~~~~rP~~~~~il~G~d~~g-~~L~~id~~G~~~~~~~ 160 (222)
.|.+.+.+.+...... +..+..+.|+.++++|.+.+++.+ +.+.|++.+++|||+|++| |.|..+|-.|..++.+.
T Consensus 93 ~Q~i~r~L~~l~iedn~~~Dg~~l~Pk~ih~yltrvlY~rR--sKmnPlwntlvVgGv~~~g~~~lg~V~~~G~~Y~~~~ 170 (256)
T KOG0185|consen 93 FQYIQRVLEQLVIEDNRLDDGQSLGPKAIHSYLTRVLYARR--SKMNPLWNTLVVGGVDNTGEPFLGYVDLLGVAYESPV 170 (256)
T ss_pred HHHHHHHHHHHHhcccccccccccChHHHHHHHHHHHHHhh--hccCchhhheeEeeecCCCCeeEEEEeeccccccCch
Confidence 9999999988777633 334589999999999999997654 5699999999999999955 99999999999999999
Q ss_pred EEecCCcHHHHHHHHHhcc---CCCCHHHHHHHHHHHHHhhhccCC-CCCcEEEEEEeeCC
Q 027541 161 SAMGKNVSNAKTFLEKRYV---EEMELDDAVHTAILTLKEGFEGQI-SEKNIEIGIIGEKK 217 (222)
Q Consensus 161 ~a~G~gs~~~~~~L~~~~~---~~~~~~ea~~l~~~~L~~~~~~d~-~~~~iei~ii~~~~ 217 (222)
.|+|.|...|.++|++.|. ++++.+||..++.+|++..++||. +..+|+|++|+++|
T Consensus 171 vATGfg~hLa~P~lR~~~~~k~~~~s~eeA~~li~~cMrVL~YRD~ra~n~fqva~v~~eG 231 (256)
T KOG0185|consen 171 VATGFGAHLALPLLRDEWEKKGEDLSREEAEALIEKCMRVLYYRDARASNEFQVATVDEEG 231 (256)
T ss_pred hhhhhHHHhhhHHHHHhhhccchhhHHHHHHHHHHHHHHHHhccccccccceEEEEEcccc
Confidence 9999999999999999997 579999999999999999999996 89999999999987
No 43
>PRK05456 ATP-dependent protease subunit HslV; Provisional
Probab=100.00 E-value=1.8e-32 Score=214.62 Aligned_cols=165 Identities=19% Similarity=0.187 Sum_probs=142.6
Q ss_pred CCcEEEEEeCCEEEEEEeecCCC-CcccCCccceEEEe-cCcEEEEEecChhhHHHHHHHHHHHHHHHHHHhCCCCCHHH
Q 027541 32 GQTSLGIKASNGVVIATEKKLPS-ILVDESSVHKIQSL-TPNIGVVYSGMGPDFRVLVRKSRKQAEQYHRLYKEPIPVTQ 109 (222)
Q Consensus 32 G~t~vgi~~~dgvvla~d~~~~~-~l~~~~~~~KI~~i-~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~i~~~~ 109 (222)
|+|+|||+++||||||+|+|.+. .++.+++.+||++| +|+++|++||..+|++.|.+.++.+++.|+. + . .+.
T Consensus 1 gtTivgi~~~dgVvlaaD~r~s~g~~v~~~~~~KI~~i~~d~i~~~~aG~~aD~q~l~~~l~~~~~~y~~--~--~-~~~ 75 (172)
T PRK05456 1 GTTILAVRRNGKVAIAGDGQVTLGNTVMKGNARKVRRLYNGKVLAGFAGSTADAFTLFERFEAKLEEHQG--N--L-LRA 75 (172)
T ss_pred CcEEEEEEECCEEEEEECCceEeCcEEEcCCCceEEEeCCCCEEEEEeccHHHHHHHHHHHHHHHHHccC--c--c-HHH
Confidence 78999999999999999999985 67888999999999 9999999999999999999999999998882 2 2 455
Q ss_pred HHHHHHHHHHHHhhcCceeeeeEeEEEEEEeCCCCeEEEECCCCceEee--eeEEecCCcHHHHHHHHHhcc-CCCCHHH
Q 027541 110 LVRETAAVMQEFTQSGGVRPFGVSLLVAGYDDKGPQLYQVDPSGSYFSW--KASAMGKNVSNAKTFLEKRYV-EEMELDD 186 (222)
Q Consensus 110 la~~l~~~~~~~~~~~~~rP~~~~~il~G~d~~g~~L~~id~~G~~~~~--~~~a~G~gs~~~~~~L~~~~~-~~~~~~e 186 (222)
+++.+..+ +.+.-.+|+.+++|++ |+ |+||.+|+.|+..+. ++.|+|+|+.+++++|++.|+ |+| |
T Consensus 76 ~a~l~~~l----~~~~~~~~l~~~~lv~--d~--~~ly~id~~G~~~~~~~~~~a~GSGs~~a~g~ld~~y~~~~m---e 144 (172)
T PRK05456 76 AVELAKDW----RTDRYLRRLEAMLIVA--DK--EHSLIISGNGDVIEPEDGIIAIGSGGNYALAAARALLENTDL---S 144 (172)
T ss_pred HHHHHHHH----HhccCCCccEEEEEEE--cC--CcEEEECCCCcEeccCCCeEEEecCHHHHHHHHHHhhhcCCC---C
Confidence 55444322 1122246888999994 43 799999999999766 899999999999999999999 999 9
Q ss_pred HHHHHHHHHHhhhccCC-CCCcEEEEE
Q 027541 187 AVHTAILTLKEGFEGQI-SEKNIEIGI 212 (222)
Q Consensus 187 a~~l~~~~L~~~~~~d~-~~~~iei~i 212 (222)
|++++++|++++.+||. ++++|+|-.
T Consensus 145 A~~la~kai~~A~~Rd~~sg~~i~v~~ 171 (172)
T PRK05456 145 AEEIAEKALKIAADICIYTNHNITIEE 171 (172)
T ss_pred HHHHHHHHHHHHHHhCeeCCCcEEEEE
Confidence 99999999999999995 999998864
No 44
>KOG0180 consensus 20S proteasome, regulatory subunit beta type PSMB3/PUP3 [Posttranslational modification, protein turnover, chaperones]
Probab=99.98 E-value=2.6e-31 Score=200.70 Aligned_cols=187 Identities=19% Similarity=0.223 Sum_probs=175.6
Q ss_pred ccCCcEEEEEeCCEEEEEEeecCCC-CcccCCccceEEEecCcEEEEEecChhhHHHHHHHHHHHHHHHHHHhCCCCCHH
Q 027541 30 GSGQTSLGIKASNGVVIATEKKLPS-ILVDESSVHKIQSLTPNIGVVYSGMGPDFRVLVRKSRKQAEQYHRLYKEPIPVT 108 (222)
Q Consensus 30 ~~G~t~vgi~~~dgvvla~d~~~~~-~l~~~~~~~KI~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~i~~~ 108 (222)
-+|+++||.++++||.||+|.|... ......+.+|||+++|++++|.+|++.|++.+.++++.....|+++.+++|.++
T Consensus 6 ynGg~vvAM~gk~cvaIa~D~RlG~q~~tistdf~ki~~igdr~y~GL~glatDvqtl~~~~~fr~nLy~lre~R~i~P~ 85 (204)
T KOG0180|consen 6 YNGGSVVAMAGKNCVAIASDLRLGVQSQTISTDFQKIFKIGDRLYLGLTGLATDVQTLLERLRFRKNLYELREEREIKPE 85 (204)
T ss_pred ecCceEEEEeCCceEEEEeccccceeeeeeeccchhheecCCeeEEeccccchhHHHHHHHHHHHHhHHHhhhhcccCcH
Confidence 4799999999999999999999885 455577999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhhcCceeeeeEeEEEEEEeCC-CCeEEEECCCCceE-eeeeEEecCCcHHHHHHHHHhccCCCCHHH
Q 027541 109 QLVRETAAVMQEFTQSGGVRPFGVSLLVAGYDDK-GPQLYQVDPSGSYF-SWKASAMGKNVSNAKTFLEKRYVEEMELDD 186 (222)
Q Consensus 109 ~la~~l~~~~~~~~~~~~~rP~~~~~il~G~d~~-g~~L~~id~~G~~~-~~~~~a~G~gs~~~~~~L~~~~~~~~~~~e 186 (222)
.+++++|.++|+.+ +-||-+..++||+|++ .|++...|..|... ..++.+.|.+++..++..|..|+|+|..|+
T Consensus 86 ~~s~mvS~~lYekR----fgpYf~~PvVAGl~~~~kPfIc~mD~IGc~~~~~DFVvsGTa~e~L~GmCE~ly~pnmepd~ 161 (204)
T KOG0180|consen 86 TFSSMVSSLLYEKR----FGPYFTEPVVAGLDDDNKPFICGMDLIGCIDAPKDFVVSGTASEQLYGMCEALYEPNMEPDE 161 (204)
T ss_pred HHHHHHHHHHHHhh----cCCcccceeEeccCCCCCeeEeecccccCcCccCCeEEecchHHHHHHHHHHhcCCCCCHHH
Confidence 99999999998775 7899999999999984 59999999999997 578999999999999999999999999999
Q ss_pred HHHHHHHHHHhhhccC-CCCCcEEEEEEeeCCceE
Q 027541 187 AVHTAILTLKEGFEGQ-ISEKNIEIGIIGEKKEFR 220 (222)
Q Consensus 187 a~~l~~~~L~~~~~~d-~~~~~iei~ii~~~~~~~ 220 (222)
+++.+.++|-++.+|| +|+....+++|++|+..+
T Consensus 162 LFetisQa~Lna~DRDalSGwGa~vyiI~kdkv~~ 196 (204)
T KOG0180|consen 162 LFETISQALLNAVDRDALSGWGAVVYIITKDKVTK 196 (204)
T ss_pred HHHHHHHHHHhHhhhhhhccCCeEEEEEccchhhh
Confidence 9999999999999999 599999999999997544
No 45
>cd01901 Ntn_hydrolase The Ntn hydrolases (N-terminal nucleophile) are a diverse superfamily of of enzymes that are activated autocatalytically via an N-terminally lcated nucleophilic amino acid. N-terminal nucleophile (NTN-) hydrolase superfamily, which contains a four-layered alpha, beta, beta, alpha core structure. This family of hydrolases includes penicillin acylase, the 20S proteasome alpha and beta subunits, and glutamate synthase. The mechanism of activation of these proteins is conserved, although they differ in their substrate specificities. All known members catalyze the hydrolysis of amide bonds in either proteins or small molecules, and each one of them is synthesized as a preprotein. For each, an autocatalytic endoproteolytic process generates a new N-terminal residue. This mature N-terminal residue is central to catalysis and acts as both a polarizing base and a nucleophile during the reaction. The N-terminal amino group acts as the proton acceptor and activates either t
Probab=99.98 E-value=1.8e-30 Score=200.62 Aligned_cols=161 Identities=42% Similarity=0.601 Sum_probs=154.2
Q ss_pred CcEEEEEeCCEEEEEEeecCCCCccc-CCccceEEEecCcEEEEEecChhhHHHHHHHHHHHHHHHHHHhCCCCCHHHHH
Q 027541 33 QTSLGIKASNGVVIATEKKLPSILVD-ESSVHKIQSLTPNIGVVYSGMGPDFRVLVRKSRKQAEQYHRLYKEPIPVTQLV 111 (222)
Q Consensus 33 ~t~vgi~~~dgvvla~d~~~~~~l~~-~~~~~KI~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~i~~~~la 111 (222)
+|+||++++||||+|+|++.+..+.. ..+..||+.++++++++++|..+|++.+.++++.+++.|+..++.++++..++
T Consensus 1 ~t~i~i~~~~gvila~d~~~~~~~~~~~~~~~ki~~~~~~~~~~~sG~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (164)
T cd01901 1 STSVAIKGKGGVVLAADKRLSSGLPVAGSPVIKIGKNEDGIAWGLAGLAADAQTLVRRLREALQLYRLRYGEPISVVALA 80 (164)
T ss_pred CcEEEEEeCCEEEEEEecccCccCeecCCCcceEEEecCCeEEEEecChHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHH
Confidence 58999999999999999999876544 67899999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhhcCceeeeeEeEEEEEEeCCCCeEEEECCCCceEee-eeEEecCCcHHHHHHHHHhccCCCCHHHHHHH
Q 027541 112 RETAAVMQEFTQSGGVRPFGVSLLVAGYDDKGPQLYQVDPSGSYFSW-KASAMGKNVSNAKTFLEKRYVEEMELDDAVHT 190 (222)
Q Consensus 112 ~~l~~~~~~~~~~~~~rP~~~~~il~G~d~~g~~L~~id~~G~~~~~-~~~a~G~gs~~~~~~L~~~~~~~~~~~ea~~l 190 (222)
+.+++.++.+++ .||+++++|++|+|+++|+||.+||.|.+.+. .++++|.++..+.++|++.|+++|+++|++++
T Consensus 81 ~~~~~~~~~~~~---~~p~~~~~iiag~~~~~~~l~~id~~g~~~~~~~~~~~G~~~~~~~~~l~~~~~~~~~~~~~~~~ 157 (164)
T cd01901 81 KELAKLLQVYTQ---GRPFGVNLIVAGVDEGGGNLYYIDPSGPVIENPGAVATGSRSQRAKSLLEKLYKPDMTLEEAVEL 157 (164)
T ss_pred HHHHHHHHHhcC---CCCcceEEEEEEEcCCCCEEEEECCCcCEeecCcEEEECCCCHHHHHHHHHHhcCCCCHHHHHHH
Confidence 999999999887 79999999999999988999999999999999 99999999999999999999999999999999
Q ss_pred HHHHHH
Q 027541 191 AILTLK 196 (222)
Q Consensus 191 ~~~~L~ 196 (222)
+.+||+
T Consensus 158 ~~~~l~ 163 (164)
T cd01901 158 ALKALK 163 (164)
T ss_pred HHHHHh
Confidence 999986
No 46
>cd01913 protease_HslV Protease HslV and the ATPase/chaperone HslU are part of an ATP-dependent proteolytic system that is the prokaryotic homolog of the proteasome. HslV is a dimer of hexamers (a dodecamer) that forms a central proteolytic chamber with active sites on the interior walls of the cavity. HslV shares significant sequence and structural similarity with the proteasomal beta-subunit and both are members of the Ntn-family of hydrolases. HslV has a nucleophilic threonine residue at its N-terminus that is exposed after processing of the propeptide and is directly involved in active site catalysis.
Probab=99.98 E-value=9.6e-31 Score=203.54 Aligned_cols=163 Identities=18% Similarity=0.125 Sum_probs=138.9
Q ss_pred CcEEEEEeCCEEEEEEeecCCC-CcccCCccceEEEecC-cEEEEEecChhhHHHHHHHHHHHHHHHHHHhCCCCCHHHH
Q 027541 33 QTSLGIKASNGVVIATEKKLPS-ILVDESSVHKIQSLTP-NIGVVYSGMGPDFRVLVRKSRKQAEQYHRLYKEPIPVTQL 110 (222)
Q Consensus 33 ~t~vgi~~~dgvvla~d~~~~~-~l~~~~~~~KI~~i~~-~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~i~~~~l 110 (222)
+|+|||+++||||||+|+|.+. .++.+++.+||++|+| |++|+++|..+|++.|.++++.+++.|+.+.++ .+
T Consensus 1 tTivgi~~~dgVvlaaD~r~t~G~~v~~~~~~Ki~~i~d~~i~~~~aG~~aD~~~l~~~~~~~~~~y~~~~~~-----~a 75 (171)
T cd01913 1 TTILAVRKNGKVVIAGDGQVTLGNTVMKGNARKVRRLYNGKVIAGFAGSTADAFTLFERFEAKLEQYPGNLLR-----AA 75 (171)
T ss_pred CeEEEEEECCEEEEEECCceEeccEEEcCCcceEEEeCCCCEEEEecccHHHHHHHHHHHHHHHHHhhchHHH-----HH
Confidence 6899999999999999999985 6788999999999999 999999999999999999999999999988763 34
Q ss_pred HHHHHHHHHHHhhcCceeeee-EeEEEEEEeCCCCeEEEECCCCceEee--eeEEecCCcHHHHHHHHHhccCC-CCHHH
Q 027541 111 VRETAAVMQEFTQSGGVRPFG-VSLLVAGYDDKGPQLYQVDPSGSYFSW--KASAMGKNVSNAKTFLEKRYVEE-MELDD 186 (222)
Q Consensus 111 a~~l~~~~~~~~~~~~~rP~~-~~~il~G~d~~g~~L~~id~~G~~~~~--~~~a~G~gs~~~~~~L~~~~~~~-~~~~e 186 (222)
++.+..+. .+ ..+|+. +.++++++| +||.+||.|...+. ++.++|+||.+|+++||..|+++ |+
T Consensus 76 a~l~~~l~-~~----~~~~~l~a~~iv~~~~----~ly~id~~G~~ie~~~~~~a~GSGS~ya~g~ld~~yk~~~ms--- 143 (171)
T cd01913 76 VELAKDWR-TD----RYLRRLEAMLIVADKE----HTLLISGNGDVIEPDDGIAAIGSGGNYALAAARALLDHTDLS--- 143 (171)
T ss_pred HHHHHHHH-hc----cCcCceEEEEEEeCCC----cEEEECCCCCEeccCCCeEEEeCCHHHHHHHHHHhhccCCCC---
Confidence 44433221 11 245555 666666453 89999999999998 49999999999999999999995 99
Q ss_pred HHHHHHHHHHhhhccCC-CCCcEEEEE
Q 027541 187 AVHTAILTLKEGFEGQI-SEKNIEIGI 212 (222)
Q Consensus 187 a~~l~~~~L~~~~~~d~-~~~~iei~i 212 (222)
+.++++++++.+.+||. ++++|+|-.
T Consensus 144 ~~~la~~Av~~A~~rd~~tg~~i~~~~ 170 (171)
T cd01913 144 AEEIARKALKIAADICIYTNHNITVEE 170 (171)
T ss_pred HHHHHHHHHHHHHhhCcccCCCEEEEe
Confidence 55999999999999995 999998754
No 47
>TIGR03692 ATP_dep_HslV ATP-dependent protease HslVU, peptidase subunit. The ATP-dependent protease HslVU, a complex of hexameric HslU active as a protein-unfolding ATPase and dodecameric HslV, the catalytic threonine protease.
Probab=99.97 E-value=2.1e-30 Score=201.67 Aligned_cols=163 Identities=18% Similarity=0.162 Sum_probs=137.8
Q ss_pred CcEEEEEeCCEEEEEEeecCCC-CcccCCccceEEEe-cCcEEEEEecChhhHHHHHHHHHHHHHHHHHHhCCCCCHHHH
Q 027541 33 QTSLGIKASNGVVIATEKKLPS-ILVDESSVHKIQSL-TPNIGVVYSGMGPDFRVLVRKSRKQAEQYHRLYKEPIPVTQL 110 (222)
Q Consensus 33 ~t~vgi~~~dgvvla~d~~~~~-~l~~~~~~~KI~~i-~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~i~~~~l 110 (222)
+|+|||+++||||||+|+|.+. .++.+++.+||++| +||++|+++|..+|++.|.++++.+++.|+... .+.+
T Consensus 1 tTivgi~~~dgVvlaaD~r~s~g~~v~~~~~~Ki~~i~~d~i~~~~aG~~aD~q~l~~~~~~~~~~y~~~~-----~~~~ 75 (171)
T TIGR03692 1 TTILAVRRNGKVVIAGDGQVTLGNTVMKGNARKVRRLYNGKVLAGFAGSTADAFTLFERFEAKLEEYQGNL-----TRAA 75 (171)
T ss_pred CeEEEEEECCEEEEEECCceEeceEEEcCCCCeEEEeCCCCEEEEecchHHHHHHHHHHHHHHHHHccCch-----HHHH
Confidence 6899999999999999999985 67889999999999 599999999999999999999999999887642 3666
Q ss_pred HHHHHHHHHHHhhcCceee-eeEeEEEEEEeCCCCeEEEECCCCceEee--eeEEecCCcHHHHHHHHHhc-cCCCCHHH
Q 027541 111 VRETAAVMQEFTQSGGVRP-FGVSLLVAGYDDKGPQLYQVDPSGSYFSW--KASAMGKNVSNAKTFLEKRY-VEEMELDD 186 (222)
Q Consensus 111 a~~l~~~~~~~~~~~~~rP-~~~~~il~G~d~~g~~L~~id~~G~~~~~--~~~a~G~gs~~~~~~L~~~~-~~~~~~~e 186 (222)
++.++++ ..+ +.+| +.+.++++++ ++||.+||.|.+.+. ++.++|+||.+++++||..| +++|+
T Consensus 76 a~l~~~~----~~~-~~~~~l~a~~iv~~~----~~ly~i~~~G~~ie~~~~~~a~GSGS~~a~g~ld~~y~~~~~s--- 143 (171)
T TIGR03692 76 VELAKDW----RTD-RYLRRLEAMLIVADK----ETSLLISGTGDVIEPEDGIAAIGSGGNYALAAARALLRNTDLS--- 143 (171)
T ss_pred HHHHHHH----hhc-ccccccEEEEEEEcC----CCEEEEcCCCcEeccCCCeEEEeCCHHHHHHHHHHhhhcCCCC---
Confidence 6654442 111 1333 4477777644 489999999999996 69999999999999999999 46777
Q ss_pred HHHHHHHHHHhhhccCC-CCCcEEEEE
Q 027541 187 AVHTAILTLKEGFEGQI-SEKNIEIGI 212 (222)
Q Consensus 187 a~~l~~~~L~~~~~~d~-~~~~iei~i 212 (222)
|+++++++++.+.+||. ++.+|+|-.
T Consensus 144 a~~la~~Av~~A~~rd~~sg~~i~v~~ 170 (171)
T TIGR03692 144 AEEIAREALKIAADICIYTNHNITIEE 170 (171)
T ss_pred HHHHHHHHHHHHHhhCccCCCCEEEEe
Confidence 99999999999999995 999998864
No 48
>PF10584 Proteasome_A_N: Proteasome subunit A N-terminal signature; InterPro: IPR000426 The proteasome (or macropain) (3.4.25.1 from EC) [, , , , ] is a eukaryotic and archaeal multicatalytic proteinase complex that seems to be involved in an ATP/ubiquitin-dependent nonlysosomal proteolytic pathway. In eukaryotes the proteasome is composed of about 28 distinct subunits which form a highly ordered ring-shaped structure (20S ring) of about 700 kDa. Most proteasome subunits can be classified, on the basis on sequence similarities into two groups, alpha (A) and beta (B). This family contains the alpha subunit sequences which range from 210 to 290 amino acids. These sequences are classified as non-peptidase homologues in MEROPS peptidase family T1 (clan PB(T)). ; GO: 0004175 endopeptidase activity, 0006511 ubiquitin-dependent protein catabolic process, 0019773 proteasome core complex, alpha-subunit complex; PDB: 3H4P_M 1IRU_O 3UN4_U 1FNT_A 3OEV_G 3OEU_U 3SDK_U 3DY3_G 3MG7_G 3L5Q_C ....
Probab=99.49 E-value=1.2e-14 Score=74.34 Aligned_cols=23 Identities=57% Similarity=0.879 Sum_probs=22.2
Q ss_pred CCCcceeeCCCCcchhhhhHHHH
Q 027541 6 YSFSLTTFSPSGKLVQIEHALTA 28 (222)
Q Consensus 6 ~d~~~~~f~p~G~l~q~eya~~a 28 (222)
||+++|+|||||||+|||||.||
T Consensus 1 YD~~~t~FSp~Grl~QVEYA~~A 23 (23)
T PF10584_consen 1 YDRSITTFSPDGRLFQVEYAMKA 23 (23)
T ss_dssp TSSSTTSBBTTSSBHHHHHHHHH
T ss_pred CCCCceeECCCCeEEeeEeeecC
Confidence 89999999999999999999987
No 49
>COG3484 Predicted proteasome-type protease [Posttranslational modification, protein turnover, chaperones]
Probab=99.41 E-value=4.5e-12 Score=99.04 Aligned_cols=184 Identities=13% Similarity=0.192 Sum_probs=140.9
Q ss_pred CcEEEEEeCCEEEEEEeecCCCCcccCCccceEEEe----cCcEEEEEecChhhHHHHHHHHHHHHHHHHHH-hCCCCCH
Q 027541 33 QTSLGIKASNGVVIATEKKLPSILVDESSVHKIQSL----TPNIGVVYSGMGPDFRVLVRKSRKQAEQYHRL-YKEPIPV 107 (222)
Q Consensus 33 ~t~vgi~~~dgvvla~d~~~~~~l~~~~~~~KI~~i----~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~-~~~~i~~ 107 (222)
+-|||++.+.|.|+++|+|++..+--.+..+|+|-. +.-++++.+|..+-.|.+.+.+.+..+..+.. --...++
T Consensus 2 TYCv~l~l~~GlVf~sDsRTNAGvD~istfkKl~~~~~pGdRvlvl~taGNLA~tQaV~~ll~e~~~~d~~~~L~n~~sm 81 (255)
T COG3484 2 TYCVGLILDFGLVFGSDSRTNAGVDYISTFKKLFVFELPGDRVLVLCTAGNLAITQAVLHLLDERIQRDDGDSLLNIPSM 81 (255)
T ss_pred ceEEEEEeccceEEecccccccCchHHHHHHHHhhccCCCceEEEEEecCccHHHHHHHHHHHHHhhccchhhhhcchhH
Confidence 569999999999999999998755334567777644 33467889999999999999998777632211 1123445
Q ss_pred HHHHHHHHHHHHHHhhcC-c-----eeeeeEeEEEEEEeCCC-CeEEEECCCCceEee----eeEEecCCcHHHHHHHHH
Q 027541 108 TQLVRETAAVMQEFTQSG-G-----VRPFGVSLLVAGYDDKG-PQLYQVDPSGSYFSW----KASAMGKNVSNAKTFLEK 176 (222)
Q Consensus 108 ~~la~~l~~~~~~~~~~~-~-----~rP~~~~~il~G~d~~g-~~L~~id~~G~~~~~----~~~a~G~gs~~~~~~L~~ 176 (222)
-..+..++....+-.... + .--|.|+.|++|.-.++ |.||.|-|.|++.+. ++.-+|.. ..-+++|++
T Consensus 82 ~eattlvgetvrEv~~rds~~leka~~dfn~sfllGGQI~G~pp~Ly~IYpqGNFIqaT~etpf~QiGEt-KYGKPildR 160 (255)
T COG3484 82 YEATTLVGETVREVQARDSPALEKAGIDFNCSFLLGGQIKGEPPRLYLIYPQGNFIQATPETPFLQIGET-KYGKPILDR 160 (255)
T ss_pred HHHHHHHHHHHHHHHhccCchhhccCcceeEEEEEcceecCCCceeEEEccCCCeeecCCCCceeEcccc-ccCchhhhh
Confidence 555666665554332211 0 12388999999998754 899999999999863 78889964 678999999
Q ss_pred hccCCCCHHHHHHHHHHHHHhhhccCC-CCCcEEEEEEeeCC
Q 027541 177 RYVEEMELDDAVHTAILTLKEGFEGQI-SEKNIEIGIIGEKK 217 (222)
Q Consensus 177 ~~~~~~~~~ea~~l~~~~L~~~~~~d~-~~~~iei~ii~~~~ 217 (222)
.+..++++||+.+.+.-++...++.++ .+-.+++-++.+|-
T Consensus 161 ~i~~~~pLeea~kcaLvS~DSTlkSNiSVGlPldLl~~e~ds 202 (255)
T COG3484 161 TITYDTPLEEAAKCALVSFDSTLKSNISVGLPLDLLVYEADS 202 (255)
T ss_pred hhhccCCHHHHhhheEEecchhhhccccccCCceeEEEeccc
Confidence 999999999999999999999898886 68899999988873
No 50
>COG5405 HslV ATP-dependent protease HslVU (ClpYQ), peptidase subunit [Posttranslational modification, protein turnover, chaperones]
Probab=99.30 E-value=2.5e-11 Score=91.68 Aligned_cols=168 Identities=20% Similarity=0.177 Sum_probs=121.4
Q ss_pred cCCcEEEEEeCCEEEEEEeecCCC-CcccCCccceEEEe-cCcEEEEEecChhhHHHHHHHHHHHHHHHHHHhCCCCCHH
Q 027541 31 SGQTSLGIKASNGVVIATEKKLPS-ILVDESSVHKIQSL-TPNIGVVYSGMGPDFRVLVRKSRKQAEQYHRLYKEPIPVT 108 (222)
Q Consensus 31 ~G~t~vgi~~~dgvvla~d~~~~~-~l~~~~~~~KI~~i-~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~i~~~ 108 (222)
+++|+++++-++-++||.|.+++- .-+...+.+|+-+| +.+++.|++|..+|+..|.+.+..+++.|.-. ..
T Consensus 3 h~TTiv~vr~~gkv~iagDGQVtlG~tvmK~narKvRkl~~gkvlaGFAGstADaftLfe~fe~kle~~~g~------L~ 76 (178)
T COG5405 3 HMTTIVAVRKNGKVVIAGDGQVTLGNTVMKGNARKVRRLYNGKVLAGFAGSTADAFTLFERFEAKLEQYQGD------LF 76 (178)
T ss_pred eeEEEEEEeeCCeEEEecCceEeecceeeeccHHHHHHHcCCcEEEEecccchhHHHHHHHHHHHHHHccCc------HH
Confidence 689999999999999999998883 44445566666555 45899999999999999999999888875421 12
Q ss_pred HHHHHHHHHHHHHhhcCceeeeeEeEEEEEEeCCCCeEEEECCCCceEe--eeeEEecCCcHHHHHHHHHhccC-CCCHH
Q 027541 109 QLVRETAAVMQEFTQSGGVRPFGVSLLVAGYDDKGPQLYQVDPSGSYFS--WKASAMGKNVSNAKTFLEKRYVE-EMELD 185 (222)
Q Consensus 109 ~la~~l~~~~~~~~~~~~~rP~~~~~il~G~d~~g~~L~~id~~G~~~~--~~~~a~G~gs~~~~~~L~~~~~~-~~~~~ 185 (222)
..+-.++.-+ +.....|.+.+-++++ |+ -.++-+...|-..+ ....|+|+|..+|.+--...+.. +++
T Consensus 77 raavelaKdw---r~Dk~lr~LEAmllVa--d~--~~il~isG~gdV~epe~~~~aIGSGgnyAl~AarAl~~~~~ls-- 147 (178)
T COG5405 77 RAAVELAKDW---RTDKYLRKLEAMLLVA--DK--THILIITGNGDVIEPEDDIIAIGSGGNYALSAARALMENTELS-- 147 (178)
T ss_pred HHHHHHHHhh---hhhhHHHHHhhheeEe--CC--CcEEEEecCcceecCCCCeEEEcCCchHHHHHHHHHHhccCCC--
Confidence 2333333333 2222255677777776 44 45788888888875 45899999999999888777654 555
Q ss_pred HHHHHHHHHHHhhhccC-CCCCcEEEEEEe
Q 027541 186 DAVHTAILTLKEGFEGQ-ISEKNIEIGIIG 214 (222)
Q Consensus 186 ea~~l~~~~L~~~~~~d-~~~~~iei~ii~ 214 (222)
|.+++.++|+.+-+-. .++.++.|-.+.
T Consensus 148 -A~eIa~~sl~iA~eiciyTN~ni~ve~l~ 176 (178)
T COG5405 148 -AREIAEKSLKIAGDICIYTNHNIVVEELR 176 (178)
T ss_pred -HHHHHHHHHhhhheEEEecCCcEEEEEee
Confidence 5567788888776644 377777776554
No 51
>PF09894 DUF2121: Uncharacterized protein conserved in archaea (DUF2121); InterPro: IPR016754 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function. They do show distant similarity to NTPases and to nucleic acid binding enzymes.
Probab=97.42 E-value=0.024 Score=44.83 Aligned_cols=153 Identities=20% Similarity=0.209 Sum_probs=90.4
Q ss_pred CcEEEEEeCCEEEEEEeecCCCCcccCCccceEEEecCcEEEEEecChhhHHHHHHHHHHHHHHHHHHhCCCCCHHHHHH
Q 027541 33 QTSLGIKASNGVVIATEKKLPSILVDESSVHKIQSLTPNIGVVYSGMGPDFRVLVRKSRKQAEQYHRLYKEPIPVTQLVR 112 (222)
Q Consensus 33 ~t~vgi~~~dgvvla~d~~~~~~l~~~~~~~KI~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~i~~~~la~ 112 (222)
+.+||.-+++|+|+|.|+|. +++-|.-.....|.+.| -.|.--+-+.|.+
T Consensus 2 SLII~y~GknGaViaGDkR~---------------------I~F~G~~~~re~LEeeL---------YsG~IktdeEL~k 51 (194)
T PF09894_consen 2 SLIIAYYGKNGAVIAGDKRN---------------------IAFRGDEEKREKLEEEL---------YSGKIKTDEELLK 51 (194)
T ss_pred eEEEEEecCCCcEEecccee---------------------eeecCCHHHHHHHHHHH---------hCCccCCHHHHHH
Confidence 56899999999999999864 34556666555555533 2344445566666
Q ss_pred HHHHHHHHH--hhc-CceeeeeEeEEEEEE------eCCCCeEEEECCCCceEee-----eeEEecCCc-----------
Q 027541 113 ETAAVMQEF--TQS-GGVRPFGVSLLVAGY------DDKGPQLYQVDPSGSYFSW-----KASAMGKNV----------- 167 (222)
Q Consensus 113 ~l~~~~~~~--~~~-~~~rP~~~~~il~G~------d~~g~~L~~id~~G~~~~~-----~~~a~G~gs----------- 167 (222)
....+=-.. +.. ...+-.+- ++++-+ +...-++|..-..=.+.+. .-...|.++
T Consensus 52 kA~Elgv~i~I~D~r~KV~~~~~-vlvGEV~s~~g~~skRRRiY~t~g~~~Ivei~~~~i~~~~~g~~sgiIVfGNk~~K 130 (194)
T PF09894_consen 52 KAEELGVKIKITDDREKVRKIGD-VLVGEVTSISGKDSKRRRIYATKGKYAIVEIENDEITNKSRGEGSGIIVFGNKFTK 130 (194)
T ss_pred HHHHcCCEEEEecCchheEEeCC-EEEEEEEEEcCccceeeEEEecCCCEEEEEecCCeEEEEecCCceeEEEECCHHHH
Confidence 544321100 000 01122222 333322 2222345543221111111 223344444
Q ss_pred HHHHHHHHHhccCCCCHHHHHHHHHHHHHhhhccC-CCCCcEEEEEEeeC
Q 027541 168 SNAKTFLEKRYVEEMELDDAVHTAILTLKEGFEGQ-ISEKNIEIGIIGEK 216 (222)
Q Consensus 168 ~~~~~~L~~~~~~~~~~~ea~~l~~~~L~~~~~~d-~~~~~iei~ii~~~ 216 (222)
+.|...|.+.|++.|+++++..++..+|+.+.... ..+..+++...++.
T Consensus 131 ~ia~~~lkk~~~~k~~l~~i~~i~~~i~~~~a~~tpsvS~~~d~~~~~~~ 180 (194)
T PF09894_consen 131 EIANKELKKYWKPKMSLKDIENIFEKIMEEVASKTPSVSKEYDIYITTKK 180 (194)
T ss_pred HHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHhhcCCCccCcEEEEEeccc
Confidence 88999999999999999999999999999986654 35778888877754
No 52
>COG4079 Uncharacterized protein conserved in archaea [Function unknown]
Probab=95.93 E-value=0.5 Score=38.83 Aligned_cols=154 Identities=18% Similarity=0.217 Sum_probs=93.1
Q ss_pred CcEEEEEeCCEEEEEEeecCCCCcccCCccceEEEecCcEEEEEecChhhHHHHHHHHHHHHHHHHHHhCCCCCHHHHHH
Q 027541 33 QTSLGIKASNGVVIATEKKLPSILVDESSVHKIQSLTPNIGVVYSGMGPDFRVLVRKSRKQAEQYHRLYKEPIPVTQLVR 112 (222)
Q Consensus 33 ~t~vgi~~~dgvvla~d~~~~~~l~~~~~~~KI~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~i~~~~la~ 112 (222)
+.+|+-.++||.|+|.|.|. +.+-|.-.|.+.+.+.| -.|.--+-+.|++
T Consensus 2 tLviay~gknGaviaGDrR~---------------------i~frgdee~re~lEekL---------YsGeIkteEEL~r 51 (293)
T COG4079 2 TLVIAYIGKNGAVIAGDRRE---------------------ITFRGDEEDREKLEEKL---------YSGEIKTEEELAR 51 (293)
T ss_pred eEEEEEecCCCcEEeccceE---------------------EEEecChhHHHHHHHHh---------hcCccccHHHHHH
Confidence 56899999999999999753 33456666766665543 3455556677777
Q ss_pred HHHHHHHHHhhc---CceeeeeEeEEEEEEeCCC------CeEEEECCCCceEee-----eeEEecCC-----------c
Q 027541 113 ETAAVMQEFTQS---GGVRPFGVSLLVAGYDDKG------PQLYQVDPSGSYFSW-----KASAMGKN-----------V 167 (222)
Q Consensus 113 ~l~~~~~~~~~~---~~~rP~~~~~il~G~d~~g------~~L~~id~~G~~~~~-----~~~a~G~g-----------s 167 (222)
+...+--+.+-. ...|-..-+++++-+..-+ -++|..-..=.+.+. -....|.| -
T Consensus 52 ~aeel~Vki~vtDdr~KVrk~~d~VvvGEV~s~~~~~vkRRRvYAT~Ga~aIvel~gs~vts~~~g~g~aiIv~Gnk~~K 131 (293)
T COG4079 52 KAEELGVKITVTDDRNKVRKRNDGVVVGEVSSVERGIVKRRRVYATAGAYAIVELRGSEVTSTSQGKGSAIIVFGNKFTK 131 (293)
T ss_pred HHHHcCCEEEEEcchHhhhcccCcEEEEEeecccccceeeeEEeecCCceEEEEecCCeeEeeecCCCceEEEECcHHHH
Confidence 665533211100 0112222334444343311 234433221111111 12223332 2
Q ss_pred HHHHHHHHHhccCCCCHHHHHHHHHHHHHhhhccC-CCCCcEEEEEEeeC
Q 027541 168 SNAKTFLEKRYVEEMELDDAVHTAILTLKEGFEGQ-ISEKNIEIGIIGEK 216 (222)
Q Consensus 168 ~~~~~~L~~~~~~~~~~~ea~~l~~~~L~~~~~~d-~~~~~iei~ii~~~ 216 (222)
+.+...|.++|.+.++++++.+++..+|..+.... ..+..++++.+...
T Consensus 132 e~aneflk~~l~~k~~lqd~~dal~elfe~vss~tpsVskeydiy~vs~~ 181 (293)
T COG4079 132 EVANEFLKDNLTKKSKLQDAVDALMELFETVSSKTPSVSKEYDIYQVSSN 181 (293)
T ss_pred HHHHHHHHhhccCCCCHHHHHHHHHHHHHHhhcCCCcccceeEEEEecCC
Confidence 67888999999999999999999999999877554 46889999988764
No 53
>KOG3361 consensus Iron binding protein involved in Fe-S cluster formation [Energy production and conversion]
Probab=91.20 E-value=0.48 Score=35.21 Aligned_cols=44 Identities=27% Similarity=0.310 Sum_probs=40.3
Q ss_pred EEECCCCceEeeeeEEecCCcHHHHHHHHHhccCCCCHHHHHHH
Q 027541 147 YQVDPSGSYFSWKASAMGKNVSNAKTFLEKRYVEEMELDDAVHT 190 (222)
Q Consensus 147 ~~id~~G~~~~~~~~a~G~gs~~~~~~L~~~~~~~~~~~ea~~l 190 (222)
..+|.+|.+.+.+|-..|.||..|-.-+-..|-..+++|||.++
T Consensus 71 Ikvd~~g~I~dakFKTFGCGSAIASSS~aTewvkgkt~dea~kI 114 (157)
T KOG3361|consen 71 IKVDDSGVIEDAKFKTFGCGSAIASSSLATEWVKGKTLDEALKI 114 (157)
T ss_pred EEECCCCcEEEeeeeecccchHhhhhHHHHHHHccccHHHHHhc
Confidence 46788999999999999999999999999999999999998764
No 54
>PF11211 DUF2997: Protein of unknown function (DUF2997); InterPro: IPR021375 This family of proteins has no known function.
Probab=60.34 E-value=19 Score=21.92 Aligned_cols=33 Identities=18% Similarity=0.188 Sum_probs=26.9
Q ss_pred EEEECCCCceEeeeeEEecCCcHHHHHHHHHhc
Q 027541 146 LYQVDPSGSYFSWKASAMGKNVSNAKTFLEKRY 178 (222)
Q Consensus 146 L~~id~~G~~~~~~~~a~G~gs~~~~~~L~~~~ 178 (222)
-|.|+|+|.....-....|.....+...|++..
T Consensus 2 ~~~I~~dG~V~~~v~G~~G~~C~~~t~~lE~~L 34 (48)
T PF11211_consen 2 EFTIYPDGRVEEEVEGFKGSSCLEATAALEEAL 34 (48)
T ss_pred EEEECCCcEEEEEEEeccChhHHHHHHHHHHHh
Confidence 378999999988777778988888888887644
No 55
>smart00481 POLIIIAc DNA polymerase alpha chain like domain. DNA polymerase alpha chain like domain, incl. family of hypothetical proteins
Probab=56.76 E-value=12 Score=23.82 Aligned_cols=32 Identities=22% Similarity=0.253 Sum_probs=28.1
Q ss_pred eeeCC-CCcchhhhhHHHHhccCCcEEEEEeCC
Q 027541 11 TTFSP-SGKLVQIEHALTAVGSGQTSLGIKASN 42 (222)
Q Consensus 11 ~~f~p-~G~l~q~eya~~a~~~G~t~vgi~~~d 42 (222)
|.||+ +|.+.--++...|.++|-..+||+-.+
T Consensus 6 t~~S~~~~~~~~~~~~~~a~~~g~~~v~iTDh~ 38 (67)
T smart00481 6 SDYSLLDGALSPEELVKRAKELGLKAIAITDHG 38 (67)
T ss_pred cCCccccccCCHHHHHHHHHHcCCCEEEEeeCC
Confidence 46888 899988899999999999999998776
No 56
>PF08529 NusA_N: NusA N-terminal domain; InterPro: IPR013735 This entry represents the N-terminal RNA polymerase-binding domain of bacterial transcription factors such as NusA (N-utilising substance A). NusA is involved in transcriptional pausing, termination and anti-termination. NusA from Thermotoga maritima contains an N-terminal domain and three RNA-binding domains (one S1 domain and two KH domains). The N-terminal domain consists of a bifurcated coiled beta-sheet within an alpha/beta(3)/alpha/beta/alpha fold, which can be divided into two subdomains: a globular head and a helical body. The globular head subdomain may interact with RNA polymerase, while the helical body displays a similar structure to that of the helical domain in sigma70 [].; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0031554 regulation of transcription termination, DNA-dependent; PDB: 1K0R_B 1HH2_P 1L2F_A 2KWP_A.
Probab=50.21 E-value=37 Score=24.81 Aligned_cols=43 Identities=16% Similarity=0.310 Sum_probs=35.1
Q ss_pred CCCCHHHHHHHHHHHHHhhhccCC-CCCcEEEEEEeeCCceEEC
Q 027541 180 EEMELDDAVHTAILTLKEGFEGQI-SEKNIEIGIIGEKKEFRQY 222 (222)
Q Consensus 180 ~~~~~~ea~~l~~~~L~~~~~~d~-~~~~iei~ii~~~~~~~~~ 222 (222)
.+++.+..+..+..+|..++.+.. ...+++|-+=.+.|.+++|
T Consensus 13 k~i~~e~v~~ale~al~~a~kK~~~~~~~~~v~id~~~g~i~v~ 56 (122)
T PF08529_consen 13 KGIDKEVVIEALEEALIKAYKKKYGPEANIRVEIDEDTGEIKVY 56 (122)
T ss_dssp CTB-HHHHHHHHHHHHHHHHHCCTTSSSSEEEEEETTTTEEEEE
T ss_pred hCcCHHHHHHHHHHHHHHHHHHhhCCCCCEEEEEECCCCeEEEE
Confidence 479999999999999999998876 6688888877777877764
No 57
>PF11773 PulG: Type II secretory pathway pseudopilin ; InterPro: IPR021749 The secreton (type II secretion) and type IV pilus biogenesis branches of the general secretory pathway in Gram-negative bacteria share many features that suggest a common evolutionary origin. Five components of the secreton, the pseudopilins, are similar to subunits of type IV pili. Pseudopilin PulG is one of the secreton pseudopilins, and is found to assemble into pilus-like bundles []. PulG interacts with proteins H, I and J within the multi-protein complex as well as blocking extracellular secretion and reducing the amount of PulE protein as well as the amounts of PulL, PulM, PulC and PulD when G is over-expressed []. In Klebsiella the pilus-like structure is composed largely of PulG [].
Probab=48.60 E-value=40 Score=23.05 Aligned_cols=40 Identities=15% Similarity=0.319 Sum_probs=31.0
Q ss_pred CCCHHHHHHHHHHHHHhhhccCCCCCcEEEEEEeeCCceEE
Q 027541 181 EMELDDAVHTAILTLKEGFEGQISEKNIEIGIIGEKKEFRQ 221 (222)
Q Consensus 181 ~~~~~ea~~l~~~~L~~~~~~d~~~~~iei~ii~~~~~~~~ 221 (222)
.+-.+|++.+|..|+..-. +.++-++++|.+...++...+
T Consensus 33 ~l~qqEvLnvA~MAvQT~Q-~~L~lNGv~V~v~~~~~~i~V 72 (82)
T PF11773_consen 33 ELQQQEVLNVAQMAVQTGQ-DHLSLNGVEVQVERTQKGIIV 72 (82)
T ss_pred HHHHHHHHHHHHHHHHhCc-ceEEEcCeEEEEEEcCCeEEE
Confidence 3457899999999999633 347888899999998876554
No 58
>PF07499 RuvA_C: RuvA, C-terminal domain; InterPro: IPR011114 In prokaryotes, RuvA, RuvB, and RuvC process the universal DNA intermediate of homologous recombination, termed Holliday junction. The tetrameric DNA helicase RuvA specifically binds to the Holliday junction and facilitates the isomerization of the junction from the stacked folded configuration to the square-planar structure []. In the RuvA tetramer, each subunit consists of three domains, I, II and III, where I and II form the major core that is responsible for Holliday junction binding and base pair rearrangements of Holliday junction executed at the crossover point, whereas domain III regulates branch migration through direct contact with RuvB. The domain represents the C-terminal domain III of RuvA. This domain plays a significant role in the ATP-dependent branch migration of the hetero-duplex through direct contact with RuvB []. Within the Holliday junction, this domain makes no interaction with the DNA.; GO: 0005524 ATP binding, 0009378 four-way junction helicase activity, 0006281 DNA repair, 0006310 DNA recombination, 0009379 Holliday junction helicase complex; PDB: 1HJP_A 1CUK_A 1C7Y_A 1IXS_A 1IXR_B 1BVS_E 2ZTC_A 2ZTD_B 2H5X_A.
Probab=44.49 E-value=17 Score=21.71 Aligned_cols=31 Identities=16% Similarity=0.324 Sum_probs=22.3
Q ss_pred ecCCcHHHHHHHHHhc-cCCCCHHHHHHHHHH
Q 027541 163 MGKNVSNAKTFLEKRY-VEEMELDDAVHTAIL 193 (222)
Q Consensus 163 ~G~gs~~~~~~L~~~~-~~~~~~~ea~~l~~~ 193 (222)
.|.....+...+.+.. .++++.++.++.+.+
T Consensus 13 LGy~~~e~~~av~~~~~~~~~~~e~~ik~aLk 44 (47)
T PF07499_consen 13 LGYSKAEAQKAVSKLLEKPGMDVEELIKQALK 44 (47)
T ss_dssp TTS-HHHHHHHHHHHHHSTTS-HHHHHHHHHC
T ss_pred cCCCHHHHHHHHHHhhcCCCCCHHHHHHHHHh
Confidence 5778888888888877 888998887666544
No 59
>PF01592 NifU_N: NifU-like N terminal domain; InterPro: IPR002871 Iron-sulphur (FeS) clusters are important cofactors for numerous proteins involved in electron transfer, in redox and non-redox catalysis, in gene regulation, and as sensors of oxygen and iron. These functions depend on the various FeS cluster prosthetic groups, the most common being [2Fe-2S] and [4Fe-4S] []. FeS cluster assembly is a complex process involving the mobilisation of Fe and S atoms from storage sources, their assembly into [Fe-S] form, their transport to specific cellular locations, and their transfer to recipient apoproteins. So far, three FeS assembly machineries have been identified, which are capable of synthesising all types of [Fe-S] clusters: ISC (iron-sulphur cluster), SUF (sulphur assimilation), and NIF (nitrogen fixation) systems. The ISC system is conserved in eubacteria and eukaryotes (mitochondria), and has broad specificity, targeting general FeS proteins [, ]. It is encoded by the isc operon (iscRSUA-hscBA-fdx-iscX). IscS is a cysteine desulphurase, which obtains S from cysteine (converting it to alanine) and serves as a S donor for FeS cluster assembly. IscU and IscA act as scaffolds to accept S and Fe atoms, assembling clusters and transfering them to recipient apoproteins. HscA is a molecular chaperone and HscB is a co-chaperone. Fdx is a [2Fe-2S]-type ferredoxin. IscR is a transcription factor that regulates expression of the isc operon. IscX (also known as YfhJ) appears to interact with IscS and may function as an Fe donor during cluster assembly []. The SUF system is an alternative pathway to the ISC system that operates under iron starvation and oxidative stress. It is found in eubacteria, archaea and eukaryotes (plastids). The SUF system is encoded by the suf operon (sufABCDSE), and the six encoded proteins are arranged into two complexes (SufSE and SufBCD) and one protein (SufA). SufS is a pyridoxal-phosphate (PLP) protein displaying cysteine desulphurase activity. SufE acts as a scaffold protein that accepts S from SufS and donates it to SufA []. SufC is an ATPase with an unorthodox ATP-binding cassette (ABC)-like component. No specific functions have been assigned to SufB and SufD. SufA is homologous to IscA [], acting as a scaffold protein in which Fe and S atoms are assembled into [FeS] cluster forms, which can then easily be transferred to apoproteins targets. In the NIF system, NifS and NifU are required for the formation of metalloclusters of nitrogenase in Azotobacter vinelandii, and other organisms, as well as in the maturation of other FeS proteins. Nitrogenase catalyses the fixation of nitrogen. It contains a complex cluster, the FeMo cofactor, which contains molybdenum, Fe and S. NifS is a cysteine desulphurase. NifU binds one Fe atom at its N-terminal, assembling an FeS cluster that is transferred to nitrogenase apoproteins []. Nif proteins involved in the formation of FeS clusters can also be found in organisms that do not fix nitrogen []. This entry represents the N-terminal of NifU and homologous proteins. NifU contains two domains: an N-terminal and a C-terminal domain (IPR001075 from INTERPRO) []. These domains exist either together or on different polypeptides, both domains being found in organisms that do not fix nitrogen (e.g. yeast), so they have a broader significance in the cell than nitrogen fixation. ; GO: 0005506 iron ion binding, 0051536 iron-sulfur cluster binding, 0016226 iron-sulfur cluster assembly; PDB: 3LVL_A 4EB5_C 4EB7_C 1WFZ_A 2Z7E_C 2AZH_A 1XJS_A 1Q48_A 1R9P_A 2KQK_A ....
Probab=44.18 E-value=88 Score=22.84 Aligned_cols=54 Identities=17% Similarity=0.238 Sum_probs=42.1
Q ss_pred EEECCC-CceEeeeeEEecCCcHHHHHHHHHhccCCCCHHHHHHHHHHHHHhhhc
Q 027541 147 YQVDPS-GSYFSWKASAMGKNVSNAKTFLEKRYVEEMELDDAVHTAILTLKEGFE 200 (222)
Q Consensus 147 ~~id~~-G~~~~~~~~a~G~gs~~~~~~L~~~~~~~~~~~ea~~l~~~~L~~~~~ 200 (222)
..+|.+ |.+.+..|.+.|.+.-.+-.-+--.+-.+.+++||.++...-+...+.
T Consensus 42 l~i~~~~~~I~d~~f~~~GC~~~~Asas~~~~~i~gk~l~ea~~i~~~~i~~~l~ 96 (126)
T PF01592_consen 42 LKIDDDGGRIKDAKFQGFGCAISIASASMMCELIKGKTLEEALKITAEDIEEALG 96 (126)
T ss_dssp EEESSSTSBEEEEEEEEESSHHHHHHHHHHHHHHTTSBHHHHHCHHHHHHHHHHT
T ss_pred EEEecCCCeEEEEEEEeecChHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHh
Confidence 567887 888899999999888777777767777889999998876665655554
No 60
>COG0822 IscU NifU homolog involved in Fe-S cluster formation [Energy production and conversion]
Probab=41.89 E-value=1.2e+02 Score=23.11 Aligned_cols=45 Identities=24% Similarity=0.258 Sum_probs=39.0
Q ss_pred EECCCCceEeeeeEEecCCcHHHHHHHHHhccCCCCHHHHHHHHHH
Q 027541 148 QVDPSGSYFSWKASAMGKNVSNAKTFLEKRYVEEMELDDAVHTAIL 193 (222)
Q Consensus 148 ~id~~G~~~~~~~~a~G~gs~~~~~~L~~~~~~~~~~~ea~~l~~~ 193 (222)
.+| .|.+....|-..|.+...+-+-+-..+-.+.|.+||+++...
T Consensus 48 kv~-~~~I~d~~F~~~GC~is~ASss~~te~v~Gkti~EAl~i~~~ 92 (150)
T COG0822 48 KVD-NGVIEDAKFKGFGCAISIASSSMMTELVKGKTLDEALKITEA 92 (150)
T ss_pred EEc-CCEEEEEEeeecCcHHHHHHHHHHHHHHcCCCHHHHHHHHHH
Confidence 455 888888999999999988888888889999999999999843
No 61
>PF10632 He_PIG_assoc: He_PIG associated, NEW1 domain of bacterial glycohydrolase; InterPro: IPR019599 This domain has been named NEW1 but its actual function is not known. It is found on proteins which are bacterial galactosidases []. The domain is associated with IPR008009 from INTERPRO, a putative Ig-containing domain.
Probab=40.59 E-value=29 Score=18.67 Aligned_cols=23 Identities=26% Similarity=0.355 Sum_probs=17.8
Q ss_pred EeEEEEEEeCCCCeEEEECCCCc
Q 027541 132 VSLLVAGYDDKGPQLYQVDPSGS 154 (222)
Q Consensus 132 ~~~il~G~d~~g~~L~~id~~G~ 154 (222)
.+..+.|.-+..|.||.|-.+|.
T Consensus 4 N~~~v~G~rPg~pfl~~IpatG~ 26 (29)
T PF10632_consen 4 NSPRVFGARPGSPFLFTIPATGE 26 (29)
T ss_pred ccCcEEcccCCCcEEEEeeccCc
Confidence 34556777787899999988885
No 62
>PRK11325 scaffold protein; Provisional
Probab=40.42 E-value=1e+02 Score=22.71 Aligned_cols=52 Identities=21% Similarity=0.218 Sum_probs=40.5
Q ss_pred EECCCCceEeeeeEEecCCcHHHHHHHHHhccCCCCHHHHHHHHHHHHHhhh
Q 027541 148 QVDPSGSYFSWKASAMGKNVSNAKTFLEKRYVEEMELDDAVHTAILTLKEGF 199 (222)
Q Consensus 148 ~id~~G~~~~~~~~a~G~gs~~~~~~L~~~~~~~~~~~ea~~l~~~~L~~~~ 199 (222)
.+|++|.+.+..|.+.|.+...+-.-+--.+-.+.+++||..+....+....
T Consensus 46 ~v~~~~~I~d~~f~~~GC~is~Asas~~~e~~~Gktl~ea~~i~~~~i~~~l 97 (127)
T PRK11325 46 KVNDEGIIEDAKFKTYGCGSAIASSSLVTEWVKGKTLDEALAIKNTDIAEEL 97 (127)
T ss_pred EECCCCeEEEEEEEeeCCHHHHHHHHHHHHHHcCCCHHHHHhcCHHHHHHHc
Confidence 5666788889999999988877777777777788999999988776555433
No 63
>cd04512 Ntn_Asparaginase_2_like Ntn-hydrolase superfamily, L-Asparaginase type 2-like enzymes. This family includes Glycosylasparaginase, Taspase 1 and L-Asparaginase type 2 enzymes. Glycosylasparaginase catalyzes the hydrolysis of the glycosylamide bond of asparagine-linked glycoprotein. Taspase1 catalyzes the cleavage of the Mix Lineage Leukemia (MLL) nuclear protein and transcription factor TFIIA. L-Asparaginase type 2 hydrolyzes L-asparagine to L-aspartate and ammonia. The proenzymes of this family undergo autoproteolytic cleavage before a threonine to generate alpha and beta subunits. The threonine becomes the N-terminal residue of the beta subunit and is the catalytic residue.
Probab=36.78 E-value=1.7e+02 Score=24.46 Aligned_cols=56 Identities=25% Similarity=0.219 Sum_probs=39.3
Q ss_pred eeEEecCCcHHHHHHHHHhc----cCCCCHHHHHHHHHHHHHhhhccCCCCCcEEEEEEeeCCce
Q 027541 159 KASAMGKNVSNAKTFLEKRY----VEEMELDDAVHTAILTLKEGFEGQISEKNIEIGIIGEKKEF 219 (222)
Q Consensus 159 ~~~a~G~gs~~~~~~L~~~~----~~~~~~~ea~~l~~~~L~~~~~~d~~~~~iei~ii~~~~~~ 219 (222)
-.+++|.|..+++..|-... +..++.++|.+.+++-|.... +...-+-.++++|++
T Consensus 175 a~s~TG~GE~iir~~~a~~v~~~~~~g~~~~~A~~~~i~~~~~~~-----~~~~G~Ia~d~~G~~ 234 (248)
T cd04512 175 AASTTGHGEAIIRTVLARRVVELMEQGMAAQAAAETAVEELGSLK-----GGQGGVIAVDSKGEF 234 (248)
T ss_pred EEEeeecHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhhc-----CCeEEEEEEeCCCCE
Confidence 46778999988888776543 457899999888777665432 223456677777764
No 64
>cd04513 Glycosylasparaginase Glycosylasparaginase catalyzes the hydrolysis of the glycosylamide bond of asparagine-linked glycoproteins. This enzyme is an amidase located inside lysosomes. Mutation of this gene in humans causes a genetic disorder known as aspartylglycosaminuria (AGU). The glycosylasparaginase precursor undergoes autoproteolysis through an N-O or N-S acyl rearrangement of the peptide bond, which leads to the cleavage of a peptide bond between an Asp and a Thr. This proteolysis step generates an exposed N-terminal catalytic threonine and activates the enzyme.
Probab=34.37 E-value=2e+02 Score=24.21 Aligned_cols=59 Identities=17% Similarity=0.176 Sum_probs=39.9
Q ss_pred eeEEecCCcHHHHHHHHHhc----cCCCCHHHHHHHHHHHHHhhhccCCCCCcEEEEEEeeCCce
Q 027541 159 KASAMGKNVSNAKTFLEKRY----VEEMELDDAVHTAILTLKEGFEGQISEKNIEIGIIGEKKEF 219 (222)
Q Consensus 159 ~~~a~G~gs~~~~~~L~~~~----~~~~~~~ea~~l~~~~L~~~~~~d~~~~~iei~ii~~~~~~ 219 (222)
-.+++|.|..+++..+.... +..++.+||.+.+++-+..... ..+...-+-.|+++|.+
T Consensus 186 a~s~TG~GE~iir~~~A~~v~~~m~~G~~~~~A~~~~i~~~~~~~~--~~~~~gg~Iavd~~G~~ 248 (263)
T cd04513 186 AAAATGDGEEMMRFLPSFQAVEYMRQGMSPKEACLEAIKRIAKHFD--GPDFEGAVVALNKKGEY 248 (263)
T ss_pred EEEeeccHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHcC--cCCCcEEEEEEcCCCCE
Confidence 45678999988887776543 4579999999888876654332 12334556667777754
No 65
>KOG0330 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=34.01 E-value=64 Score=28.95 Aligned_cols=124 Identities=17% Similarity=0.297 Sum_probs=70.1
Q ss_pred cCcEEEEEecChhhHHHHHHHHHHHHHHHHHHhCC-CCCHHHHHHHHHHHHHHHhhcCceeeeeEeEEEEEEeC------
Q 027541 69 TPNIGVVYSGMGPDFRVLVRKSRKQAEQYHRLYKE-PIPVTQLVRETAAVMQEFTQSGGVRPFGVSLLVAGYDD------ 141 (222)
Q Consensus 69 ~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~-~i~~~~la~~l~~~~~~~~~~~~~rP~~~~~il~G~d~------ 141 (222)
.|-|+.+-+|..--.-.+.-.++...+..+.-+.- --|.++||..|+.......+..+ +-+.+|++|.|-
T Consensus 99 ~dvIglAeTGSGKT~afaLPIl~~LL~~p~~~~~lVLtPtRELA~QI~e~fe~Lg~~ig---lr~~~lvGG~~m~~q~~~ 175 (476)
T KOG0330|consen 99 RDVIGLAETGSGKTGAFALPILQRLLQEPKLFFALVLTPTRELAQQIAEQFEALGSGIG---LRVAVLVGGMDMMLQANQ 175 (476)
T ss_pred CcEEEEeccCCCchhhhHHHHHHHHHcCCCCceEEEecCcHHHHHHHHHHHHHhccccC---eEEEEEecCchHHHHHHH
Confidence 45566777777666666666665444422221111 23679999999999988877655 458999999985
Q ss_pred --CCCeEEEECCCCceEeeeeEEecCCcHHHHHH-HHHhcc-CCCCHHHHHHHHHHHHH
Q 027541 142 --KGPQLYQVDPSGSYFSWKASAMGKNVSNAKTF-LEKRYV-EEMELDDAVHTAILTLK 196 (222)
Q Consensus 142 --~g~~L~~id~~G~~~~~~~~a~G~gs~~~~~~-L~~~~~-~~~~~~ea~~l~~~~L~ 196 (222)
..|++. +-.-|..++.---.-|..-+...-+ |+.--+ -+|+.++-++-+.+.+-
T Consensus 176 L~kkPhil-VaTPGrL~dhl~~Tkgf~le~lk~LVlDEADrlLd~dF~~~ld~ILk~ip 233 (476)
T KOG0330|consen 176 LSKKPHIL-VATPGRLWDHLENTKGFSLEQLKFLVLDEADRLLDMDFEEELDYILKVIP 233 (476)
T ss_pred hhcCCCEE-EeCcHHHHHHHHhccCccHHHhHHHhhchHHhhhhhhhHHHHHHHHHhcC
Confidence 368884 4555555443222223222222111 111111 15666666666655443
No 66
>COG1754 Uncharacterized C-terminal domain of topoisomerase IA [General function prediction only]
Probab=33.85 E-value=28 Score=29.55 Aligned_cols=58 Identities=21% Similarity=0.277 Sum_probs=38.2
Q ss_pred EEEEeC-CC-CeEEEECCCCceEeeeeEEecCC-cHHHHHHHHHhccC-CCCHHHHHHHHHHHHH
Q 027541 136 VAGYDD-KG-PQLYQVDPSGSYFSWKASAMGKN-VSNAKTFLEKRYVE-EMELDDAVHTAILTLK 196 (222)
Q Consensus 136 l~G~d~-~g-~~L~~id~~G~~~~~~~~a~G~g-s~~~~~~L~~~~~~-~~~~~ea~~l~~~~L~ 196 (222)
+.|.|+ .| +-.......|-+... ..|.. -....+-|-+.|.+ ++++|+|++|+..=..
T Consensus 77 ~LG~DP~tG~eI~~k~GryGPYVq~---~lg~~~~kpkraSLpkg~~~e~ItLE~AL~LLsLPR~ 138 (298)
T COG1754 77 VLGIDPETGEEIYLKNGRYGPYVQE---QLGDPKPKPKRASLPKGWKPETITLEKALKLLSLPRV 138 (298)
T ss_pred ccccCCCCCceeEEeccCCCceeee---ecCCCCCCcccccCCCCCChhhCcHHHHHHHHcCchh
Confidence 346785 45 555566667766543 45655 55666677777875 7999999998765333
No 67
>cd04702 ASRGL1_like ASRGL1_like domains, a subfamily of the L-Asparaginase type 2-like enzymes. The wider family includes Glycosylasparaginase, Taspase 1 and L-Asparaginase type 2 enzymes. The proenzymes undergo autoproteolytic cleavage before a threonine to generate alpha and beta subunits. The threonine becomes the N-terminal residue of the beta subunit and is the catalytic residue. ASRGL1, or asparaginase-like 1, has been cloned from mammalian testis cDNA libraries. It has been identified as a sperm antigen that may induce the production of autoantibodies following obstruction of the male reproductive tract, e.g. vasectomy.
Probab=32.09 E-value=2.1e+02 Score=24.07 Aligned_cols=56 Identities=18% Similarity=0.125 Sum_probs=38.0
Q ss_pred eeEEecCCcHHHHHHHHHhc----cCCCCHHHHHHHHHHHHHhhhccCCCCCcEEEEEEeeCCce
Q 027541 159 KASAMGKNVSNAKTFLEKRY----VEEMELDDAVHTAILTLKEGFEGQISEKNIEIGIIGEKKEF 219 (222)
Q Consensus 159 ~~~a~G~gs~~~~~~L~~~~----~~~~~~~ea~~l~~~~L~~~~~~d~~~~~iei~ii~~~~~~ 219 (222)
-.+++|.|..+++..+.... +..++++||.+.++.-+..... ...-+-.|+++|++
T Consensus 178 a~s~TG~GE~iir~~~a~~v~~~m~~g~s~~eA~~~~i~~~~~~~~-----g~gG~Iavd~~G~~ 237 (261)
T cd04702 178 AVSTTGHGESIMKVVLARLILDHMEQGGSAQEAADKAIEYMTERVK-----GTGGAIVLDSSGEV 237 (261)
T ss_pred EEEeeccHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHcC-----CceEEEEEeCCCCE
Confidence 46779999988887776543 4578999999988876654332 22345556666653
No 68
>PF14804 Jag_N: Jag N-terminus; PDB: 3GKU_B.
Probab=32.04 E-value=89 Score=19.25 Aligned_cols=28 Identities=21% Similarity=0.399 Sum_probs=20.5
Q ss_pred CCHHHHHHHHHHHHHhhhccCCCCCcEEEEEEee
Q 027541 182 MELDDAVHTAILTLKEGFEGQISEKNIEIGIIGE 215 (222)
Q Consensus 182 ~~~~ea~~l~~~~L~~~~~~d~~~~~iei~ii~~ 215 (222)
-|+|||++.+.+-|.. ....+++-||.+
T Consensus 5 kt~eeAi~~A~~~l~~------~~~~~~~eVi~~ 32 (52)
T PF14804_consen 5 KTVEEAIEKALKELGV------PREELEYEVIEE 32 (52)
T ss_dssp SSHHHHHHHHHHHTT--------GGGEEEEEEE-
T ss_pred CCHHHHHHHHHHHhCC------ChHHEEEEEEEc
Confidence 4789999888887764 345889999987
No 69
>PRK02260 S-ribosylhomocysteinase; Provisional
Probab=31.70 E-value=2.3e+02 Score=21.93 Aligned_cols=77 Identities=17% Similarity=0.265 Sum_probs=54.8
Q ss_pred HHHHHHHHHHHHHHHhhcCceeeeeEeEEEEEEeCCCCeEEEECCCCceEeeeeEEec-CCcHHHHHHHHHhcc------
Q 027541 107 VTQLVRETAAVMQEFTQSGGVRPFGVSLLVAGYDDKGPQLYQVDPSGSYFSWKASAMG-KNVSNAKTFLEKRYV------ 179 (222)
Q Consensus 107 ~~~la~~l~~~~~~~~~~~~~rP~~~~~il~G~d~~g~~L~~id~~G~~~~~~~~a~G-~gs~~~~~~L~~~~~------ 179 (222)
+..+-+.++.++++.. +.+-.+..+.|-|.-+-.+....| ..++.+...+++-++
T Consensus 53 lHTlEHL~At~lRn~~------------------~~~~~iI~~sPMGCrTGFYli~~g~~~~~~i~~l~~~~l~~i~~~~ 114 (158)
T PRK02260 53 IHTLEHLLAGFLRNHL------------------DGGVEIIDISPMGCRTGFYLILIGTPDEEDVADALKATLEDVLDDQ 114 (158)
T ss_pred hhHHHHHHHHHHhhCc------------------cCCceEEEECCCccccccEEEEeCCCCHHHHHHHHHHHHHHHHhhc
Confidence 3455566666665442 124557788889988888888888 666777776666442
Q ss_pred --------------CCCCHHHHHHHHHHHHHhhhcc
Q 027541 180 --------------EEMELDDAVHTAILTLKEGFEG 201 (222)
Q Consensus 180 --------------~~~~~~ea~~l~~~~L~~~~~~ 201 (222)
.+++++.|...+.+.|.+....
T Consensus 115 ~eVPga~~~~CGny~~hsL~~Ak~~a~~~L~~~~~~ 150 (158)
T PRK02260 115 EEVPGANEYQCGNYKDHSLEGAKEIARKILDQGISV 150 (158)
T ss_pred CCCCCCChhcCCChhhCCHHHHHHHHHHHHHhhccc
Confidence 2689999999999999876654
No 70
>COG0279 GmhA Phosphoheptose isomerase [Carbohydrate transport and metabolism]
Probab=31.06 E-value=59 Score=25.45 Aligned_cols=35 Identities=23% Similarity=0.293 Sum_probs=26.4
Q ss_pred eCCCCcchhhhh-HHHHhccCCcEEEEEeCCEEEEE
Q 027541 13 FSPSGKLVQIEH-ALTAVGSGQTSLGIKASNGVVIA 47 (222)
Q Consensus 13 f~p~G~l~q~ey-a~~a~~~G~t~vgi~~~dgvvla 47 (222)
+||.|.-.-|-- ..+|..+|-++||++++||=-++
T Consensus 116 ISTSGNS~nVl~Ai~~Ak~~gm~vI~ltG~~GG~~~ 151 (176)
T COG0279 116 ISTSGNSKNVLKAIEAAKEKGMTVIALTGKDGGKLA 151 (176)
T ss_pred EeCCCCCHHHHHHHHHHHHcCCEEEEEecCCCcccc
Confidence 677776654444 46667799999999999987665
No 71
>COG4728 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=31.01 E-value=59 Score=23.21 Aligned_cols=31 Identities=16% Similarity=0.365 Sum_probs=27.1
Q ss_pred eEEEecCcEEEEEecChhhHHHHHHHHHHHH
Q 027541 64 KIQSLTPNIGVVYSGMGPDFRVLVRKSRKQA 94 (222)
Q Consensus 64 KI~~i~~~i~~~~sG~~~D~~~l~~~~~~~~ 94 (222)
-+|+|.+..++.+.|..+|.-.+.+++++..
T Consensus 9 ~~~~i~~~~gl~~v~~~~~~s~~~~k~~~~~ 39 (124)
T COG4728 9 IIFKIKDKLGLTFVSKSADMSIQVEKAERLI 39 (124)
T ss_pred EEEEEhhhcCcEEEEecchhHHHHHHHHHhh
Confidence 3689999999999999999999999887654
No 72
>PF06057 VirJ: Bacterial virulence protein (VirJ); InterPro: IPR010333 This entry contains several bacterial VirJ virulence proteins. VirJ is thought to be involved in the type IV secretion system. It is thought that the substrate proteins localised to the periplasm may associate with the pilus in a manner that is mediated by VirJ, and suggest a two-step process for type IV secretion in Agrobacterium [].
Probab=30.13 E-value=80 Score=25.25 Aligned_cols=34 Identities=15% Similarity=0.284 Sum_probs=27.2
Q ss_pred CCCHHHHHHHHHHHHHHHhhcCceeeeeEeEEEEEEeC
Q 027541 104 PIPVTQLVRETAAVMQEFTQSGGVRPFGVSLLVAGYDD 141 (222)
Q Consensus 104 ~i~~~~la~~l~~~~~~~~~~~~~rP~~~~~il~G~d~ 141 (222)
+-+++.++..++++++.|.+.++.+. ++|+|+.-
T Consensus 44 ~rtP~~~a~Dl~~~i~~y~~~w~~~~----vvLiGYSF 77 (192)
T PF06057_consen 44 ERTPEQTAADLARIIRHYRARWGRKR----VVLIGYSF 77 (192)
T ss_pred hCCHHHHHHHHHHHHHHHHHHhCCce----EEEEeecC
Confidence 56789999999999999998876543 47788754
No 73
>TIGR01999 iscU FeS cluster assembly scaffold IscU. This model represents IscU, a homolog of the N-terminal region of NifU, an Fe-S cluster assembly protein found mostly in nitrogen-fixing bacteria. IscU is considered part of the IscSUA-hscAB-fdx system of Fe-S assembly, whereas NifU is found in nitrogenase-containing (nitrogen-fixing) species. A NifU-type protein is also found in Helicobacter and Campylobacter. IscU and NifU are considered scaffold proteins on which Fe-S clusters are assembled before transfer to apoproteins. This model excludes true NifU proteins as in Klebsiella pneumoniae and Anabaena sp. as well as archaeal homologs. It includes largely proteobacterial and eukaryotic forms.
Probab=29.65 E-value=2e+02 Score=20.98 Aligned_cols=52 Identities=15% Similarity=0.197 Sum_probs=39.4
Q ss_pred EECCCCceEeeeeEEecCCcHHHHHHHHHhccCCCCHHHHHHHHHHHHHhhh
Q 027541 148 QVDPSGSYFSWKASAMGKNVSNAKTFLEKRYVEEMELDDAVHTAILTLKEGF 199 (222)
Q Consensus 148 ~id~~G~~~~~~~~a~G~gs~~~~~~L~~~~~~~~~~~ea~~l~~~~L~~~~ 199 (222)
.+|.+|.+.+..|.+.|.....+-.-+--.+-.+.+++||..+.-..+....
T Consensus 44 ~v~~~~~I~d~~f~~~GC~~s~Asas~~~e~i~Gktl~ea~~i~~~~i~~~l 95 (124)
T TIGR01999 44 KVNDDGIIEDAKFKTFGCGSAIASSSLATELIKGKSLEEALKIKNTEIAKEL 95 (124)
T ss_pred EECCCCeEEEEEEEecCcHHHHHHHHHHHHHHcCCCHHHHHhccHHHHHHHc
Confidence 4566688888999988888777776666667788999999888776555433
No 74
>COG4831 Roadblock/LC7 domain [Function unknown]
Probab=27.32 E-value=29 Score=24.44 Aligned_cols=10 Identities=70% Similarity=1.109 Sum_probs=6.8
Q ss_pred eeeCCCCcch
Q 027541 11 TTFSPSGKLV 20 (222)
Q Consensus 11 ~~f~p~G~l~ 20 (222)
..|||||||.
T Consensus 18 Gefs~DGkLv 27 (109)
T COG4831 18 GEFSPDGKLV 27 (109)
T ss_pred ceeCCCCceE
Confidence 3578888773
No 75
>PF02811 PHP: PHP domain; InterPro: IPR004013 The PHP (Polymerase and Histidinol Phosphatase) domain is a putative phosphoesterase domain. This family is often associated with an N-terminal region IPR003141 from INTERPRO.; GO: 0003824 catalytic activity; PDB: 2WJE_A 3QY8_A 2WJD_A 2WJF_A 1PB0_B 1M68_A 1M65_A 3E38_B 2W9M_A 3E0F_A ....
Probab=26.47 E-value=56 Score=24.51 Aligned_cols=31 Identities=26% Similarity=0.235 Sum_probs=26.3
Q ss_pred eeeC-CCCcchhhhhHHHHhccCCcEEEEEeC
Q 027541 11 TTFS-PSGKLVQIEHALTAVGSGQTSLGIKAS 41 (222)
Q Consensus 11 ~~f~-p~G~l~q~eya~~a~~~G~t~vgi~~~ 41 (222)
|.|| ++|...--||..+|.++|=+.|||+-.
T Consensus 7 T~~s~~dg~~~~~e~v~~A~~~Gl~~i~iTDH 38 (175)
T PF02811_consen 7 TKYSILDGKDSPEEYVEQAKEKGLDAIAITDH 38 (175)
T ss_dssp -TTTSSTSSSSHHHHHHHHHHTTESEEEEEEE
T ss_pred ccCcchhhcCCHHHHHHHHHHcCCCEEEEcCC
Confidence 4577 789998888999999999999998765
No 76
>PRK14065 exodeoxyribonuclease VII small subunit; Provisional
Probab=26.20 E-value=1.9e+02 Score=19.92 Aligned_cols=30 Identities=10% Similarity=0.189 Sum_probs=23.4
Q ss_pred HHHHHHHHHhccCCCCHHHHHHHHHHHHHh
Q 027541 168 SNAKTFLEKRYVEEMELDDAVHTAILTLKE 197 (222)
Q Consensus 168 ~~~~~~L~~~~~~~~~~~ea~~l~~~~L~~ 197 (222)
+.+..+|++.-.|++|+++.+++=..+++.
T Consensus 32 erakeiLe~LndpeisL~eSvkLYkeG~~l 61 (86)
T PRK14065 32 HSLEQAIDRLNDPNLSLKDGMDLYKTAMQE 61 (86)
T ss_pred HHHHHHHHHhcCCCCCHHHHHHHHHHHHHH
Confidence 567888999889999999888875555543
No 77
>cd05781 DNA_polB_B3_exo DEDDy 3'-5' exonuclease domain of Sulfurisphaera ohwakuensis DNA polymerase B3 and similar archaeal family-B DNA polymerases. The 3'-5' exonuclease domain of archaeal proteins with similarity to Sulfurisphaera ohwakuensis DNA polymerase B3. B3 is a family-B DNA polymerase. Family-B DNA polymerases contain an N-terminal DEDDy DnaQ-like exonuclease domain in the same polypeptide chain as the polymerase domain, similar to family-A DNA polymerases. B3 exhibits both polymerase and 3'-5' exonuclease activities. This exonuclease domain contains three sequence motifs termed ExoI, ExoII and ExoIII, with a specific YX(3)D pattern at ExoIII. These motifs are clustered around the active site and are involved in metal binding and catalysis. The exonuclease domain of family B polymerases also contains a beta hairpin structure that plays an important role in active site switching in the event of nucleotide misincorporation. Archaeal proteins that are involved in DNA replicatio
Probab=25.98 E-value=46 Score=26.21 Aligned_cols=33 Identities=27% Similarity=0.385 Sum_probs=28.1
Q ss_pred CccceEEEecCcEEEEEecChhhHHHHHHHHHH
Q 027541 60 SSVHKIQSLTPNIGVVYSGMGPDFRVLVRKSRK 92 (222)
Q Consensus 60 ~~~~KI~~i~~~i~~~~sG~~~D~~~l~~~~~~ 92 (222)
.-.+-|-..++.+++|+.|...|...+.++++.
T Consensus 54 ~F~~~i~~~dPd~i~gyN~~~FDlpyl~~Ra~~ 86 (188)
T cd05781 54 EFVKYVKEYDPDIIVGYNSNAFDWPYLVERARV 86 (188)
T ss_pred HHHHHHHHcCCCEEEecCCCcCcHHHHHHHHHH
Confidence 455667778899999999999999999998864
No 78
>TIGR02000 NifU_proper Fe-S cluster assembly protein NifU. Three different but partially homologous Fe-S cluster assembly systems have been described: Isc, Suf, and Nif. The latter is associated with donation of an Fe-S cluster to nitrogenase in a number of nitrogen-fixing species. NifU, described here, consists of an N-terminal domain (pfam01592) and a C-terminal domain (pfam01106). Homologs with an equivalent domain archictecture from Helicobacter and Campylobacter, however, are excluded from this model by a high trusted cutoff. The model, therefore, is specific for NifU involved in nitrogenase maturation. The related model TIGR01999 homologous to the N-terminus of this model describes IscU from the Isc system as in E. coli, Saccharomyces cerevisiae, and Homo sapiens.
Probab=24.59 E-value=2.7e+02 Score=23.76 Aligned_cols=50 Identities=18% Similarity=0.256 Sum_probs=36.9
Q ss_pred EECC-CCceEeeeeEEecCCcHHHHHHHHHhccCCCCHHHHHHHHHHHHHh
Q 027541 148 QVDP-SGSYFSWKASAMGKNVSNAKTFLEKRYVEEMELDDAVHTAILTLKE 197 (222)
Q Consensus 148 ~id~-~G~~~~~~~~a~G~gs~~~~~~L~~~~~~~~~~~ea~~l~~~~L~~ 197 (222)
.+|+ +|.+.+..|.+.|.+...|-+-+-..+-.+.+++||.++..+-+.+
T Consensus 44 ~vd~~~~~I~d~~F~~~GCais~ASAs~~~eli~Gktv~ea~~i~~~di~~ 94 (290)
T TIGR02000 44 KVDPESDKIVDAGFQTFGCGSAIASSSALTEMIKGLTLDEALKVSNQDIAD 94 (290)
T ss_pred EEcCCCCeEEEEEEEecCcHHHHHHHHHHHHHHcCCCHHHHHHhhHHHHHH
Confidence 5675 6777888999888887777666666677778888887776655444
No 79
>KOG0083 consensus GTPase Rab26/Rab37, small G protein superfamily [General function prediction only]
Probab=23.59 E-value=89 Score=23.65 Aligned_cols=39 Identities=18% Similarity=0.195 Sum_probs=25.9
Q ss_pred ccCCcEEEEEeCCEEEEEEeecCCCCcccCCccceEEEecCc
Q 027541 30 GSGQTSLGIKASNGVVIATEKKLPSILVDESSVHKIQSLTPN 71 (222)
Q Consensus 30 ~~G~t~vgi~~~dgvvla~d~~~~~~l~~~~~~~KI~~i~~~ 71 (222)
..|.||+-|+++||..++..--.+-.+ +.-+|+..+++.
T Consensus 7 ~~gktcllir~kdgafl~~~fistvgi---d~rnkli~~~~~ 45 (192)
T KOG0083|consen 7 CTGKTCLLIRFKDGAFLAGNFISTVGI---DFRNKLIDMDDK 45 (192)
T ss_pred ccCceEEEEEeccCceecCceeeeeee---ccccceeccCCc
Confidence 468899999999999988642221111 344667666664
No 80
>PF08289 Flu_M1_C: Influenza Matrix protein (M1) C-terminal domain; InterPro: IPR013188 Matrix protein (M1) of Influenza virus is a bifunctional membrane/RNA-binding protein that mediates the encapsidation of RNA-nucleoprotein cores into the membrane envelope. It is therefore required that M1 binds both membrane and RNA simultaneously. M1 is comprised of two domains connected by a linker sequence. The C-terminal domain contains alpha-helical structure and appears to be involved in growth and virulence of the virus [, ].; GO: 0003723 RNA binding, 0005198 structural molecule activity
Probab=23.50 E-value=2.5e+02 Score=19.21 Aligned_cols=48 Identities=10% Similarity=0.165 Sum_probs=37.9
Q ss_pred ecChhhHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHhhc
Q 027541 77 SGMGPDFRVLVRKSRKQAEQYHRLYKEPIPVTQLVRETAAVMQEFTQS 124 (222)
Q Consensus 77 sG~~~D~~~l~~~~~~~~~~~~~~~~~~i~~~~la~~l~~~~~~~~~~ 124 (222)
|--.+|++.+.+.++..++-.+-.--.+-+...|++.+-+.++.|..+
T Consensus 39 seq~~e~~eiAsq~r~~i~amRsiGt~~~~~~Gl~dDlle~Lq~yQk~ 86 (95)
T PF08289_consen 39 SEQAAEAMEIASQARSMIQAMRSIGTHPKNSEGLADDLLENLQAYQKR 86 (95)
T ss_pred hHhHHHHHHHHHHHHHHHHHHHHhcCCCCCccchHHHHHHHHHHHHHH
Confidence 335689999999999999887766555667888999988888877544
No 81
>PF06787 UPF0254: Uncharacterised protein family (UPF0254); InterPro: IPR009625 This is a group of proteins of unknown function.
Probab=23.29 E-value=3.5e+02 Score=20.84 Aligned_cols=62 Identities=19% Similarity=0.229 Sum_probs=41.0
Q ss_pred CCCCCcceeeCCCCcchhhhhHHHHhccCC-cEEEE-----EeCCEEEEEEeecCCCCcccCCccceEEEecCcEEEEEe
Q 027541 4 SQYSFSLTTFSPSGKLVQIEHALTAVGSGQ-TSLGI-----KASNGVVIATEKKLPSILVDESSVHKIQSLTPNIGVVYS 77 (222)
Q Consensus 4 ~~~d~~~~~f~p~G~l~q~eya~~a~~~G~-t~vgi-----~~~dgvvla~d~~~~~~l~~~~~~~KI~~i~~~i~~~~s 77 (222)
.-|+. ..+|+.|+.+.-....-+++++=+ .=||| .++++|.+.+| ++.+...|
T Consensus 69 ~~~~~-~K~Y~ee~D~~vA~~mA~avk~~~~~dI~IgTTAGiGrGaI~I~t~--------------------~~~~~~tS 127 (160)
T PF06787_consen 69 YVIKY-IKAYNEENDLEVAKLMAKAVKNKLNCDIGIGTTAGIGRGAICIVTD--------------------KNEYVFTS 127 (160)
T ss_pred hhhcc-ceeecccccHHHHHHHHHHHHHHhCCCeeeecccccCCceEEEEeC--------------------CcEEEEec
Confidence 34554 568999999988877777765322 22444 56778888875 34556667
Q ss_pred cChhhHHHH
Q 027541 78 GMGPDFRVL 86 (222)
Q Consensus 78 G~~~D~~~l 86 (222)
...+|...-
T Consensus 128 dv~adL~~~ 136 (160)
T PF06787_consen 128 DVYADLRKS 136 (160)
T ss_pred ceehhHhhh
Confidence 777877665
No 82
>PF12385 Peptidase_C70: Papain-like cysteine protease AvrRpt2; InterPro: IPR022118 This is a family of cysteine proteases, found in actinobacteria, protobacteria and firmicutes. Papain-like cysteine proteases play a crucial role in plant-pathogen/pest interactions. On entering the host they act on non-self substrates, thereby manipulating the host to evade proteolysis []. AvrRpt2 from Pseudomonas syringae pv tomato DC3000 triggers resistance to P. syringae-2-dependent defence responses, including hypersensitive cell death, by cleaving the Arabidopsis RIN4 protein which is monitored by the cognate resistance protein RPS2 [].
Probab=23.27 E-value=2.9e+02 Score=21.44 Aligned_cols=48 Identities=17% Similarity=0.200 Sum_probs=29.1
Q ss_pred HHHHHHHHHHHHHHhhcC--ceeee----eEeEEEEEEeCCCCeEEEECCCCce
Q 027541 108 TQLVRETAAVMQEFTQSG--GVRPF----GVSLLVAGYDDKGPQLYQVDPSGSY 155 (222)
Q Consensus 108 ~~la~~l~~~~~~~~~~~--~~rP~----~~~~il~G~d~~g~~L~~id~~G~~ 155 (222)
..-++.+++++.+|-=-+ ..+|- +=..+|.|+|.+|-.|...||.+.-
T Consensus 95 ~~t~e~~~~LL~~yGPLwv~~~~P~~~~~~H~~ViTGI~~dg~~i~~~DP~~gP 148 (166)
T PF12385_consen 95 SYTAEGLANLLREYGPLWVAWEAPGDSWVAHASVITGIDGDGDSIHVHDPEQGP 148 (166)
T ss_pred ccCHHHHHHHHHHcCCeEEEecCCCCcceeeEEEEEeecCCCCeEEecCcccCC
Confidence 455566666666552000 01231 1336788999888888889998754
No 83
>PF08958 DUF1871: Domain of unknown function (DUF1871); InterPro: IPR015053 This set of hypothetical proteins is produced by prokaryotes pertaining to the Bacillus genus. ; PDB: 1U84_A.
Probab=22.87 E-value=1.5e+02 Score=20.02 Aligned_cols=29 Identities=14% Similarity=0.187 Sum_probs=20.6
Q ss_pred HHHHHHHHHhccCCCCHHHHHHHHHHHHH
Q 027541 168 SNAKTFLEKRYVEEMELDDAVHTAILTLK 196 (222)
Q Consensus 168 ~~~~~~L~~~~~~~~~~~ea~~l~~~~L~ 196 (222)
..++.+++..|.+.++.++.+++|.+.|.
T Consensus 42 ~~Iq~If~~SF~e~~~~e~C~~iA~klL~ 70 (79)
T PF08958_consen 42 KKIQSIFEFSFGEWLPIEECEEIAEKLLA 70 (79)
T ss_dssp HHHHHHHHHHHSS---HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcccCCHHHHHHHHHHHHh
Confidence 55677777788888899999988888775
No 84
>PF06018 CodY: CodY GAF-like domain; InterPro: IPR010312 This family consists of several bacterial GTP-sensing transcriptional pleiotropic repressor CodY proteins. CodY has been found to repress the dipeptide transport operon (dpp) of Bacillus subtilis in nutrient-rich conditions []. The CodY protein also has a repressor effect on many genes in Lactococcus lactis during growth in milk [].; GO: 0003677 DNA binding, 0005525 GTP binding; PDB: 2HGV_A 2GX5_D 2B0L_C 2B18_A.
Probab=22.66 E-value=3.9e+02 Score=21.06 Aligned_cols=67 Identities=15% Similarity=0.305 Sum_probs=38.5
Q ss_pred HHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHhhcCceeeeeEeEEEEEEeCCCCeEEEECCCCceEeeeeEEecCC
Q 027541 87 VRKSRKQAEQYHRLYKEPIPVTQLVRETAAVMQEFTQSGGVRPFGVSLLVAGYDDKGPQLYQVDPSGSYFSWKASAMGKN 166 (222)
Q Consensus 87 ~~~~~~~~~~~~~~~~~~i~~~~la~~l~~~~~~~~~~~~~rP~~~~~il~G~d~~g~~L~~id~~G~~~~~~~~a~G~g 166 (222)
.++.|+-...-+..-+.+++...+|+.|++.+. ..+|-++..|.+.-+... -+..
T Consensus 3 LeKtRkIN~lLQ~~~~~~v~F~~ia~vL~dvl~------------------------aNvyIis~kGkiLGy~~~-~~~~ 57 (177)
T PF06018_consen 3 LEKTRKINRLLQKSAGEPVDFNDIAEVLSDVLE------------------------ANVYIISRKGKILGYSFI-DDFE 57 (177)
T ss_dssp HHHHHHHHHHHHSHTTSS--HHHHHHHHHHHHT------------------------SEEEEEETTSBEEEEE-S-S---
T ss_pred HHHHHHHHHHHhhcCCCCCCHHHHHHHHHHhhc------------------------CcEEEEeCCccEEEEecc-CCCC
Confidence 444444444444446789999999999999773 226777777877655443 4445
Q ss_pred cHHHHHHHHHhc
Q 027541 167 VSNAKTFLEKRY 178 (222)
Q Consensus 167 s~~~~~~L~~~~ 178 (222)
+......++...
T Consensus 58 ~~~~~~~~~~~~ 69 (177)
T PF06018_consen 58 CDRMEEMLEEKR 69 (177)
T ss_dssp -HHHHHHHHHTB
T ss_pred cHHHHHHHhcCc
Confidence 555666665543
No 85
>KOG3652 consensus Uncharacterized conserved protein [Function unknown]
Probab=22.64 E-value=2.3e+02 Score=27.36 Aligned_cols=98 Identities=14% Similarity=0.055 Sum_probs=58.1
Q ss_pred HHhCCCCCHHHHHHHHHHHHHHHhhcCceeeeeEeEEEEEEeCCCCeEEEECCCCceEeeeeEEecCCcHHHHHHHHHhc
Q 027541 99 RLYKEPIPVTQLVRETAAVMQEFTQSGGVRPFGVSLLVAGYDDKGPQLYQVDPSGSYFSWKASAMGKNVSNAKTFLEKRY 178 (222)
Q Consensus 99 ~~~~~~i~~~~la~~l~~~~~~~~~~~~~rP~~~~~il~G~d~~g~~L~~id~~G~~~~~~~~a~G~gs~~~~~~L~~~~ 178 (222)
...|++|+...|.++.+.++|..... -|-|-.+++.+--+||.||+.|-.|-=.-.++...-----.+-..+.+.+
T Consensus 209 KksgEeIl~a~LS~FY~ll~Q~Lq~k----dyvchpmLasl~ln~p~LFccdLkGId~llP~Fi~ALd~il~dre~~rkf 284 (1215)
T KOG3652|consen 209 KKSGEEILNAQLSNFYALLFQCLQEK----DYVCHPMLASLFLNGPNLFCCDLKGIDSLLPHFIFALDIILIDREKLRKF 284 (1215)
T ss_pred ccCcccccHHHHHHHHHHHHHHHhhc----ccccchhheeeeecCCceeeecCCchhHhhHHHHHHHHhhhccHHHhhhc
Confidence 35688999999999998888765432 35566666666557899999998886443333211100001111111222
Q ss_pred cCCCCHHHHHHHHHHHHHhhhc
Q 027541 179 VEEMELDDAVHTAILTLKEGFE 200 (222)
Q Consensus 179 ~~~~~~~ea~~l~~~~L~~~~~ 200 (222)
+.--+..|...-.+++|...+-
T Consensus 285 kS~~n~tElRRa~in~LlSli~ 306 (1215)
T KOG3652|consen 285 KSISNETELRRACINALLSLIC 306 (1215)
T ss_pred cccCCHHHHHHHHHHHHHHhcc
Confidence 3333466777777777776653
No 86
>PF08140 Cuticle_1: Crustacean cuticle protein repeat; InterPro: IPR012539 This family consists of the cuticle proteins from the Cancer pagurus (Rock crab) and the Homarus americanus (American lobster). These proteins are isolated from the calcified regions of the crustacean and they contain two copies of an 18 residue sequence motif, which thus far has been found only in crustacean calcified exoskeletons [].; GO: 0042302 structural constituent of cuticle
Probab=22.42 E-value=1.6e+02 Score=17.24 Aligned_cols=30 Identities=23% Similarity=0.464 Sum_probs=21.1
Q ss_pred eeeCCCCcchhhhhHHHHhccCCcEEEEEeCCEEEEE
Q 027541 11 TTFSPSGKLVQIEHALTAVGSGQTSLGIKASNGVVIA 47 (222)
Q Consensus 11 ~~f~p~G~l~q~eya~~a~~~G~t~vgi~~~dgvvla 47 (222)
.+-.|+|+..|+.-. -.-|.+.+..|+|+.
T Consensus 4 Gii~~dG~~~q~~~~-------~a~ivl~GpSG~v~s 33 (40)
T PF08140_consen 4 GIITPDGTNVQFPHG-------VANIVLIGPSGAVLS 33 (40)
T ss_pred ceECCCCCEEECCcc-------cceEEEECCceEEee
Confidence 356799999997642 225677788888764
No 87
>PF01242 PTPS: 6-pyruvoyl tetrahydropterin synthase; InterPro: IPR007115 The complex organic chemistry involved in the transformation of GTP to tetrahydrobiopterin is catalysed by only three enzymes: GTP cyclohydrolase I, 6-pyruvoyltetrahydropterin synthase and sepiapterin reductase. Tetrahydrobiopterin is the cofactor for several aromatic amino acid monooxygenases and the nitric oxide synthases. 6-Pyruvoyl tetrahydropterin synthase (PTPS) [] is a Zn-dependent metalloprotein, transforms dihydroneopterin triphosphate into 6-pyruvoyltetrahydropterin in the presence of Mg(II) and for which the crystal structure is known. The enzyme is a homohexameric, composed of a dimer of trimers. A transition metal binding site formed by the three histidine residues 23, 48 and 50 is present in each subunit, and bound Zn(II) is responsible for the enzymatic activity. Site-directed mutagenesis of each of these three histidine residues results in a complete loss of metal binding and enzymatic activity [, ]. The function of the bacterial branch of the sequence lineage appears not to have been established.; GO: 0003874 6-pyruvoyltetrahydropterin synthase activity, 0046872 metal ion binding, 0006729 tetrahydrobiopterin biosynthetic process; PDB: 3QNA_E 3QN9_A 3QN0_B 1Y13_C 3D7J_A 3I2B_J 2OBA_D 3M0N_A 2A0S_A 3LZE_A ....
Probab=21.89 E-value=2.1e+02 Score=20.58 Aligned_cols=46 Identities=20% Similarity=0.151 Sum_probs=28.7
Q ss_pred ecChhhHHHHHHHHHHHHHHHHHHhC------C----CCCHHHHHHHHHHHHHHHh
Q 027541 77 SGMGPDFRVLVRKSRKQAEQYHRLYK------E----PIPVTQLVRETAAVMQEFT 122 (222)
Q Consensus 77 sG~~~D~~~l~~~~~~~~~~~~~~~~------~----~i~~~~la~~l~~~~~~~~ 122 (222)
.|..-|+..+.+.++.-+..+...+= . .++++.+|.++.+.+....
T Consensus 43 ~g~v~DF~~lk~~~~~i~~~lDh~~Ln~~~~~~~~~~~pT~E~lA~~i~~~l~~~l 98 (123)
T PF01242_consen 43 DGMVVDFGDLKKIIKEIDDQLDHKFLNEDDPEFDDINNPTAENLARWIFERLKEKL 98 (123)
T ss_dssp TSSSS-HHHHHHHHHHHHHHHTTEEGGHHSGCGCSSTS--HHHHHHHHHHHHHHHH
T ss_pred CCEEEEHHHHHHHHHHHHHHhCcccccCCChhhhccCCCCHHHHHHHHHHHHHHHh
Confidence 46677888888888764444332211 0 1678999999998887665
No 88
>PF08269 Cache_2: Cache domain; InterPro: IPR013163 Cache is an extracellular domain that is predicted to have a role in small-molecule recognition in a wide range of proteins, including the animal dihydropyridine-sensitive voltage-gated Ca2+ channel; alpha-2delta subunit, and various bacterial chemotaxis receptors. The name Cache comes from CAlcium channels and CHEmotaxis receptors. This domain consists of an N-terminal part with three predicted strands and an alpha-helix, and a C-terminal part with a strand dyad followed by a relatively unstructured region. The N-terminal portion of the (unpermuted) Cache domain contains three predicted strands that could form a sheet analogous to that present in the core of the PAS domain structure. Cache domains are particularly widespread in bacteria, with Vibrio cholerae. The animal calcium channel alpha-2delta subunits might have acquired a part of their extracellular domains from a bacterial source []. The Cache domain appears to have arisen from the GAF-PAS fold despite their divergent functions []. This entry is composed of the type 2 Cache domain.; PDB: 2QHK_A 4EXO_A.
Probab=21.72 E-value=1.1e+02 Score=20.75 Aligned_cols=35 Identities=14% Similarity=-0.021 Sum_probs=17.7
Q ss_pred CCCCHHHHHHHHHHHHHhhhccCCCCCcEEEEEEeeCCc
Q 027541 180 EEMELDDAVHTAILTLKEGFEGQISEKNIEIGIIGEKKE 218 (222)
Q Consensus 180 ~~~~~~ea~~l~~~~L~~~~~~d~~~~~iei~ii~~~~~ 218 (222)
..+|.+||.+.++..|...... +.=-+++.+.+|.
T Consensus 33 g~ls~eea~~~a~~~l~~~r~~----~~gY~fi~d~~g~ 67 (95)
T PF08269_consen 33 GKLSEEEAQQQAREALRALRYG----GDGYFFIYDMDGV 67 (95)
T ss_dssp T-----TTHHHHHHHHHH--SB----TTB--EEE-TTSB
T ss_pred CCccHHHHHHHHHHHHhccccC----CCCeEEEEeCCCe
Confidence 3699999999999999876542 2225666677764
No 89
>PF10740 DUF2529: Protein of unknown function (DUF2529); InterPro: IPR019676 This entry represents a protein family conserved in the Bacillales. Their function is not known. ; PDB: 3JX9_A.
Probab=20.66 E-value=48 Score=26.00 Aligned_cols=56 Identities=21% Similarity=0.268 Sum_probs=28.7
Q ss_pred ceeeCCC-CcchhhhhHHHHhccCCcEEEEE-e-------CCEEEEEEeecCCCCcccCCccceE
Q 027541 10 LTTFSPS-GKLVQIEHALTAVGSGQTSLGIK-A-------SNGVVIATEKKLPSILVDESSVHKI 65 (222)
Q Consensus 10 ~~~f~p~-G~l~q~eya~~a~~~G~t~vgi~-~-------~dgvvla~d~~~~~~l~~~~~~~KI 65 (222)
+.+|+|. ..---++-|++...+|-..|+|. . .+.+..-.|++...+++..++.+||
T Consensus 85 Vllfs~~~~~~e~~~~a~~L~~~gi~~v~Vs~~~~~~~~l~~~~~~~Idl~~~~~LvP~EdG~Ri 149 (172)
T PF10740_consen 85 VLLFSPFSTDEEAVALAKQLIEQGIPFVGVSPNKPDEEDLEDLADVHIDLKLPKPLVPTEDGDRI 149 (172)
T ss_dssp EEEEES-S--HHHHHHHHHHHHHT--EEEEE-SS---TTGGG-SSS-EE----S-SEE-TTS-EE
T ss_pred EEEEeCCCCCHHHHHHHHHHHHCCCCEEEEEecCCCCCchhhhhhheeecccCCCcccCCCCCEe
Confidence 6678886 44455667889999999999998 1 1233344455555566666666665
No 90
>PF03681 UPF0150: Uncharacterised protein family (UPF0150); InterPro: IPR005357 This family of small proteins is uncharacterised. In Q9A3L8 from SWISSPROT this domain is found next to a DNA binding helix-turn-helix domain IPR002145 from INTERPRO, which suggests that this is some kind of ligand binding domain.; PDB: 2DSY_C 2YZT_A 3KWR_A.
Probab=20.54 E-value=1.2e+02 Score=17.73 Aligned_cols=17 Identities=24% Similarity=0.255 Sum_probs=13.0
Q ss_pred CHHHHHHHHHHHHHhhh
Q 027541 183 ELDDAVHTAILTLKEGF 199 (222)
Q Consensus 183 ~~~ea~~l~~~~L~~~~ 199 (222)
|++||++.++.+|...+
T Consensus 30 t~eea~~~~~eal~~~l 46 (48)
T PF03681_consen 30 TLEEALENAKEALELWL 46 (48)
T ss_dssp SHHHHHHHHHHHHHHHC
T ss_pred CHHHHHHHHHHHHHHHh
Confidence 67788888888887654
No 91
>TIGR02261 benz_CoA_red_D benzoyl-CoA reductase, bcr type, subunit D. This model describes the D subunit of benzoyl-CoA reductase, a 4-subunit enzyme. Many aromatic compounds are metabolized by way of benzoyl-CoA. This family shows sequence similarity to the A subunit (TIGR02259) and to the 2-hydroxyglutaryl-CoA dehydratase alpha chain.
Probab=20.38 E-value=1.3e+02 Score=25.30 Aligned_cols=51 Identities=16% Similarity=0.193 Sum_probs=32.5
Q ss_pred EEEEeCCCCeEEEECCCCceEee---eeEEecCCcHHHHHHHHHhcc-CCCCHHHHHHHHHHH
Q 027541 136 VAGYDDKGPQLYQVDPSGSYFSW---KASAMGKNVSNAKTFLEKRYV-EEMELDDAVHTAILT 194 (222)
Q Consensus 136 l~G~d~~g~~L~~id~~G~~~~~---~~~a~G~gs~~~~~~L~~~~~-~~~~~~ea~~l~~~~ 194 (222)
++|.| -.+..+|..|..... +-||.|.|+ +||.--+ -+++++|.-+++.++
T Consensus 104 IGGQD---~K~I~~~~~G~v~~f~MNdkCAAGTG~-----FLe~~A~~L~i~leel~~~a~~~ 158 (262)
T TIGR02261 104 IGALH---GRAIRMDERGKVEAYKMTSQCASGSGQ-----FLENIARYLGIAQDEIGSLSQQA 158 (262)
T ss_pred eCCCc---eEEEEEcCCCcEeeEEecCcccccccH-----HHHHHHHHhCCCHHHHHHHHhcC
Confidence 56666 357888999998754 678888883 3433222 256777666655443
Done!