Query 027541
Match_columns 222
No_of_seqs 113 out of 1142
Neff 8.5
Searched_HMMs 29240
Date Mon Mar 25 19:27:08 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/027541.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/027541hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1yar_A Proteasome alpha subuni 100.0 2.8E-64 9.6E-69 413.8 28.3 222 1-222 3-224 (233)
2 1iru_B 20S proteasome; cell cy 100.0 5E-63 1.7E-67 406.4 27.7 219 3-222 2-220 (233)
3 1j2p_A Alpha-ring, proteasome 100.0 1.3E-62 4.5E-67 406.9 28.4 221 1-222 3-224 (246)
4 1ryp_A 20S proteasome; multica 100.0 5E-63 1.7E-67 408.7 25.5 218 4-222 1-227 (243)
5 1iru_E 20S proteasome; cell cy 100.0 6.3E-63 2.1E-67 407.7 25.8 222 1-222 3-229 (241)
6 3h4p_A Proteasome subunit alph 100.0 4.8E-63 1.7E-67 412.8 23.4 220 2-222 8-228 (264)
7 1iru_F 20S proteasome; cell cy 100.0 2E-62 6.9E-67 409.2 26.4 220 1-222 1-224 (263)
8 1iru_A 20S proteasome; cell cy 100.0 7.8E-62 2.7E-66 402.3 28.2 219 4-222 7-230 (246)
9 1ryp_F 20S proteasome; multica 100.0 3.6E-62 1.2E-66 401.2 24.1 218 2-222 1-224 (233)
10 1ryp_C 20S proteasome; multica 100.0 2.6E-61 8.8E-66 398.7 28.9 219 4-222 3-229 (244)
11 1ryp_D 20S proteasome; multica 100.0 5.8E-61 2E-65 395.9 28.2 216 5-222 1-222 (241)
12 1iru_G 20S proteasome; cell cy 100.0 2.3E-61 7.8E-66 401.1 25.7 221 2-222 3-227 (254)
13 1iru_C 20S proteasome; cell cy 100.0 5E-61 1.7E-65 400.5 27.5 221 2-222 1-228 (261)
14 1iru_D 20S proteasome; cell cy 100.0 2.6E-61 8.8E-66 399.5 24.8 215 6-222 3-220 (248)
15 1ryp_B 20S proteasome; multica 100.0 1.1E-60 3.6E-65 396.3 28.3 214 3-216 2-217 (250)
16 3nzj_F Proteasome component C1 100.0 6.8E-61 2.3E-65 403.5 27.2 213 3-215 5-221 (288)
17 1ryp_G 20S proteasome; multica 100.0 1.5E-60 5.2E-65 394.0 28.3 218 3-220 1-225 (244)
18 1ryp_E 20S proteasome; multica 100.0 1.5E-60 5.1E-65 393.7 25.2 216 7-222 1-223 (242)
19 1q5q_A Proteasome alpha-type s 100.0 2.7E-51 9.4E-56 341.1 22.6 203 11-222 5-223 (259)
20 3mi0_A Proteasome subunit alph 100.0 5.2E-50 1.8E-54 330.9 24.4 200 14-222 8-225 (248)
21 1yar_H Proteasome beta subunit 100.0 7.1E-47 2.4E-51 307.1 23.4 191 27-222 3-195 (217)
22 3nzj_H Proteasome component PU 100.0 5.5E-47 1.9E-51 315.0 23.2 192 25-221 22-215 (261)
23 1j2q_H Proteasome beta subunit 100.0 3.6E-46 1.2E-50 299.8 24.5 185 33-222 1-188 (202)
24 1ryp_H 20S proteasome; multica 100.0 2.5E-46 8.5E-51 301.4 21.1 190 26-221 3-195 (205)
25 1iru_N 20S proteasome; cell cy 100.0 9.4E-47 3.2E-51 306.8 18.8 193 26-221 2-199 (219)
26 3h4p_a Proteasome subunit beta 100.0 1.3E-46 4.4E-51 306.0 19.4 186 32-222 1-190 (219)
27 3nzj_K Proteasome component PR 100.0 2.3E-46 7.7E-51 314.9 21.4 205 13-222 50-263 (287)
28 1ryp_N 20S proteasome; multica 100.0 2.1E-46 7.3E-51 307.4 17.2 194 26-221 2-208 (233)
29 1iru_H 20S proteasome; cell cy 100.0 2.1E-45 7.2E-50 296.0 21.5 184 33-221 1-188 (205)
30 2jay_A Proteasome; hydrolase; 100.0 1.5E-45 5.2E-50 310.6 21.2 216 4-222 23-262 (291)
31 1iru_M 20S proteasome; cell cy 100.0 5.7E-45 1.9E-49 295.1 23.5 186 29-218 6-203 (213)
32 1ryp_I 20S proteasome; multica 100.0 4.7E-45 1.6E-49 297.4 23.0 184 33-221 1-186 (222)
33 1iru_L 20S proteasome; cell cy 100.0 2.7E-45 9.3E-50 295.1 21.0 184 33-221 1-186 (204)
34 3unf_H Proteasome subunit beta 100.0 4.8E-45 1.7E-49 299.1 22.5 183 33-221 1-185 (234)
35 1ryp_K 20S proteasome; multica 100.0 5.3E-45 1.8E-49 292.1 22.1 187 32-221 1-191 (198)
36 1q5r_H Proteasome beta-type su 100.0 2.4E-45 8.1E-50 309.7 20.8 196 25-222 58-270 (294)
37 1ryp_L 20S proteasome; multica 100.0 5.6E-45 1.9E-49 294.9 21.6 184 33-221 1-187 (212)
38 1g0u_M Proteasome component PR 100.0 1.5E-45 5.1E-50 307.8 16.4 198 22-221 31-241 (266)
39 1ryp_M 20S proteasome; multica 100.0 2.2E-44 7.4E-49 293.5 22.3 186 29-218 6-212 (222)
40 1ryp_J 20S proteasome; multica 100.0 1.2E-43 4.1E-48 285.5 24.3 185 29-218 5-194 (204)
41 1iru_J 20S proteasome; cell cy 100.0 5.3E-44 1.8E-48 287.8 22.0 186 29-218 5-195 (205)
42 1q5q_H Proteasome beta-type su 100.0 4E-44 1.4E-48 294.2 21.2 188 33-222 1-205 (235)
43 1iru_K 20S proteasome; cell cy 100.0 1.2E-43 4E-48 285.0 22.1 184 32-217 1-187 (201)
44 1iru_I 20S proteasome; cell cy 100.0 1.5E-43 5E-48 290.6 22.7 183 33-221 1-185 (234)
45 3unf_N Proteasome subunit beta 100.0 2.7E-43 9.2E-48 282.4 18.3 183 33-222 1-188 (199)
46 2z3b_A ATP-dependent protease 100.0 7.4E-37 2.5E-41 241.4 17.1 168 30-213 3-179 (180)
47 1m4y_A ATP-dependent protease 100.0 2.4E-36 8.2E-41 236.6 17.2 165 33-213 1-171 (171)
48 1g3k_A ATP-dependent protease 100.0 5.6E-36 1.9E-40 235.1 16.7 166 33-214 1-173 (174)
49 2kwp_A Transcription elongatio 39.1 38 0.0013 24.1 4.2 51 171-221 6-58 (129)
50 3jx9_A Putative phosphoheptose 32.0 27 0.00092 26.2 2.5 31 10-40 81-112 (170)
51 4eo3_A Bacterioferritin comigr 31.8 17 0.00058 30.0 1.5 39 144-182 103-142 (322)
52 2kxe_A DNA polymerase II small 31.0 56 0.0019 20.4 3.4 26 168-193 20-46 (75)
53 3hvz_A Uncharacterized protein 30.4 25 0.00086 22.7 1.8 37 6-42 4-48 (78)
54 3lvl_A NIFU-like protein; prot 29.6 79 0.0027 22.3 4.6 51 145-195 43-94 (129)
55 2z7e_A ISCU protein, NIFU-like 29.6 1E+02 0.0035 22.6 5.3 53 144-196 40-94 (157)
56 3fpw_A HBPS, extracellular HAE 29.2 80 0.0027 24.1 4.8 37 179-218 62-98 (192)
57 1apy_B Aspartylglucosaminidase 28.5 88 0.003 22.6 4.7 57 159-219 48-108 (141)
58 2yxo_A Histidinol phosphatase; 28.3 33 0.0011 26.8 2.6 32 11-42 8-39 (267)
59 2a2l_A Unknown; structural gen 26.7 54 0.0018 23.7 3.3 36 180-218 10-45 (145)
60 4gdv_A L-asparaginase; NTN enz 23.8 1.7E+02 0.0057 24.1 6.1 63 152-219 207-276 (310)
61 1su0_B NIFU like protein ISCU; 22.5 2.3E+02 0.0078 20.6 7.0 52 144-196 44-96 (159)
62 3rj2_X ORF158L protein, putati 22.4 22 0.00077 25.0 0.4 17 5-21 54-70 (138)
63 1xjs_A NIFU-like protein; SR17 20.2 2E+02 0.0068 20.6 5.3 52 144-196 45-97 (147)
No 1
>1yar_A Proteasome alpha subunit; proteasome 20S, PA26 proteasome activator 11S, hydrolase-HYD activator complex; 1.90A {Thermoplasma acidophilum} SCOP: d.153.1.4 PDB: 1ya7_A 1pma_A 3c91_A 3c92_A 3ipm_A 2ku1_A 2ku2_A 1yau_A 3jrm_A 3jse_A 3jtl_A
Probab=100.00 E-value=2.8e-64 Score=413.79 Aligned_cols=222 Identities=40% Similarity=0.620 Sum_probs=207.5
Q ss_pred CCCCCCCCcceeeCCCCcchhhhhHHHHhccCCcEEEEEeCCEEEEEEeecCCCCcccCCccceEEEecCcEEEEEecCh
Q 027541 1 MGDSQYSFSLTTFSPSGKLVQIEHALTAVGSGQTSLGIKASNGVVIATEKKLPSILVDESSVHKIQSLTPNIGVVYSGMG 80 (222)
Q Consensus 1 ~~~~~~d~~~~~f~p~G~l~q~eya~~a~~~G~t~vgi~~~dgvvla~d~~~~~~l~~~~~~~KI~~i~~~i~~~~sG~~ 80 (222)
|++++||+++|+|||||||+|+|||.+|+++|+|+|||+++||||||+|+|.+++++.+++.+||++|++|++++++|..
T Consensus 3 m~~~~yd~~~t~fsp~Grl~QvEya~~av~~Gtt~vgi~~~dgVvlaaD~r~~~~~~~~~~~~Ki~~i~~~i~~~~aG~~ 82 (233)
T 1yar_A 3 QGQMAYSRAITVFSPDGRLFQVEYAREAVKKGSTALGMKFANGVLLISDKKVRSRLIEQNSIEKIQLIDDYVAAVTSGLV 82 (233)
T ss_dssp ----------CCCCTTSCCHHHHHHHHHHTTSCCEEEEEETTEEEEEECCCCCCTTBCSTTCCSEEEEETTEEEEEEEBH
T ss_pred cccccCCCCCceECcCCeeHHHHhHHHHHhcCCcEEEEEECCEEEEEEeccCCcccccccccCeEEEecCCEEEEEeeCH
Confidence 67889999999999999999999999999999999999999999999999999888888999999999999999999999
Q ss_pred hhHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHhhcCceeeeeEeEEEEEEeCCCCeEEEECCCCceEeeee
Q 027541 81 PDFRVLVRKSRKQAEQYHRLYKEPIPVTQLVRETAAVMQEFTQSGGVRPFGVSLLVAGYDDKGPQLYQVDPSGSYFSWKA 160 (222)
Q Consensus 81 ~D~~~l~~~~~~~~~~~~~~~~~~i~~~~la~~l~~~~~~~~~~~~~rP~~~~~il~G~d~~g~~L~~id~~G~~~~~~~ 160 (222)
+|++.+.++++.+++.|+++++++++++.+++++++++|.++++.+.|||++++||||||++||+||.+||.|++.++++
T Consensus 83 aD~~~l~~~~~~~~~~~~~~~~~~~~v~~~a~~l~~~~~~~~~~~~~rp~~v~~lvaG~D~~gp~Ly~id~~G~~~~~~~ 162 (233)
T 1yar_A 83 ADARVLVDFARISAQQEKVTYGSLVNIENLVKRVADQMQQYTQYGGVRPYGVSLIFAGIDQIGPRLFDCDPAGTINEYKA 162 (233)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHSSCCCHHHHHHHHHHHHHHTTTBTTBCCCCEEEEEEEECSSCEEEEEECTTCCEEEBSE
T ss_pred HHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHhcCcCCcCcceEEEEEEEEeCCCCEEEEECCCCCEEeeeE
Confidence 99999999999999999999999999999999999999999999899999999999999998999999999999999999
Q ss_pred EEecCCcHHHHHHHHHhccCCCCHHHHHHHHHHHHHhhhccCCCCCcEEEEEEeeCCceEEC
Q 027541 161 SAMGKNVSNAKTFLEKRYVEEMELDDAVHTAILTLKEGFEGQISEKNIEIGIIGEKKEFRQY 222 (222)
Q Consensus 161 ~a~G~gs~~~~~~L~~~~~~~~~~~ea~~l~~~~L~~~~~~d~~~~~iei~ii~~~~~~~~~ 222 (222)
+|+|+|++.++++||+.|+++|+++||++++++||+.+.++|+++.+++|++|+++|+|+++
T Consensus 163 ~aiG~gs~~a~~~Le~~~~~~~s~eea~~la~~al~~~~~~d~s~~~i~v~vi~~~~~~~~~ 224 (233)
T 1yar_A 163 TAIGSGKDAVVSFLEREYKENLPEKEAVTLGIKALKSSLEEGEELKAPEIASITVGNKYRIY 224 (233)
T ss_dssp EEESTTHHHHHHHHHHHCCTTCCHHHHHHHHHHHHHHTSCSSCCCCCCEEEEEETTSCCEEC
T ss_pred EEEcCCcHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHhhccCCCCcEEEEEEECCCCEEEC
Confidence 99999999999999999999999999999999999999999988999999999999988875
No 2
>1iru_B 20S proteasome; cell cycle, immune response, proteolysis, ubiquitin, hydrolase; 2.75A {Bos taurus} SCOP: d.153.1.4 PDB: 3unb_A* 3une_A 3unf_A* 3unh_A
Probab=100.00 E-value=5e-63 Score=406.36 Aligned_cols=219 Identities=67% Similarity=1.065 Sum_probs=213.6
Q ss_pred CCCCCCcceeeCCCCcchhhhhHHHHhccCCcEEEEEeCCEEEEEEeecCCCCcccCCccceEEEecCcEEEEEecChhh
Q 027541 3 DSQYSFSLTTFSPSGKLVQIEHALTAVGSGQTSLGIKASNGVVIATEKKLPSILVDESSVHKIQSLTPNIGVVYSGMGPD 82 (222)
Q Consensus 3 ~~~~d~~~~~f~p~G~l~q~eya~~a~~~G~t~vgi~~~dgvvla~d~~~~~~l~~~~~~~KI~~i~~~i~~~~sG~~~D 82 (222)
+++||+++|+|||||||+|||||.+|+++|+|+|||+++||||||+|+|.+++++.+++.+||++|++|++++++|..+|
T Consensus 2 ~~~yd~~~t~fsp~Grl~QvEya~~av~~Gtt~vgi~~~dgVvlaaD~r~~~~l~~~~~~~Ki~~i~~~i~~~~aG~~aD 81 (233)
T 1iru_B 2 ERGYSFSLTTFSPSGKLVQIEYALAAVAGGAPSVGIKAANGVVLATEKKQKSILYDERSVHKVEPITKHIGLVYSGMGPD 81 (233)
T ss_dssp CCCCCSBSCCCCTTSCCHHHHHHHHHHHTSCCEEEEECSSCEEEEEECCCCCSSBCSTTCCSSEESSSSEEEEEEECHHH
T ss_pred CCCccCCceeECCCCeEehhHhHHHHHHcCCcEEEEEeCCEEEEEEEecCCccccccccCCeEEEECCCEEEEEEEccHH
Confidence 68999999999999999999999999999999999999999999999999988888899999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHhhcCceeeeeEeEEEEEEeCCCCeEEEECCCCceEeeeeEE
Q 027541 83 FRVLVRKSRKQAEQYHRLYKEPIPVTQLVRETAAVMQEFTQSGGVRPFGVSLLVAGYDDKGPQLYQVDPSGSYFSWKASA 162 (222)
Q Consensus 83 ~~~l~~~~~~~~~~~~~~~~~~i~~~~la~~l~~~~~~~~~~~~~rP~~~~~il~G~d~~g~~L~~id~~G~~~~~~~~a 162 (222)
++.+.++++.+++.|+++++++++++.+++++++++|.|++++++|||++++||||||++||+||.+||.|++.+++++|
T Consensus 82 ~~~l~~~~~~~~~~~~~~~~~~~~v~~la~~l~~~~~~y~~~~~~rP~~v~~lvaG~D~~gp~Ly~id~~G~~~~~~~~a 161 (233)
T 1iru_B 82 YRVLVHRARKLAQQYYLVYQEPIPTAQLVQRVASVMQEYTQSGGVRPFGVSLLICGWNEGRPYLFQSDPSGAYFAWKATA 161 (233)
T ss_dssp HHHHHHHHHHHHHHHHHHHSSCCCHHHHHHHHHHHHHHTTTSBTBCCCSEEEEEEEECSSSEEEEEECTTSCEEEBSEEE
T ss_pred HHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHhcCcCCCCCcEEEEEEEEEeCCCCeEEEECCCCCEEEeeEEE
Confidence 99999999999999999999999999999999999999999988999999999999998899999999999999999999
Q ss_pred ecCCcHHHHHHHHHhccCCCCHHHHHHHHHHHHHhhhccCCCCCcEEEEEEeeCCceEEC
Q 027541 163 MGKNVSNAKTFLEKRYVEEMELDDAVHTAILTLKEGFEGQISEKNIEIGIIGEKKEFRQY 222 (222)
Q Consensus 163 ~G~gs~~~~~~L~~~~~~~~~~~ea~~l~~~~L~~~~~~d~~~~~iei~ii~~~~~~~~~ 222 (222)
+|+|++.++++||+.|+++|+++||++++++||+.+.++|.++.+++|++|+++| |+++
T Consensus 162 iG~gs~~a~~~Le~~~~~~ms~eea~~la~~al~~~~~~d~sg~~i~v~vi~~~g-~~~l 220 (233)
T 1iru_B 162 MGKNYVNGKTFLEKRYNEDLELEDAIHTAILTLKESFEGQMTEDNIEVGICNEAG-FRRL 220 (233)
T ss_dssp ESTTHHHHHHHHHHHCCTTCCHHHHHHHHHHHHHTTCCSCCCSSSEEEEEEETTE-EEEC
T ss_pred ECCCCHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHhhccCCCCCEEEEEEECCC-EEEC
Confidence 9999999999999999999999999999999999999999889999999999998 8764
No 3
>1j2p_A Alpha-ring, proteasome alpha subunit; hydrolase; 2.60A {Archaeoglobus fulgidus} SCOP: d.153.1.4 PDB: 1j2q_A*
Probab=100.00 E-value=1.3e-62 Score=406.90 Aligned_cols=221 Identities=35% Similarity=0.652 Sum_probs=213.3
Q ss_pred CCCCCCCCcceeeCCCCcchhhhhHHHHhccCCcEEEEEeCCEEEEEEeecCCCCcccCCccceEEEecCcEEEEEecCh
Q 027541 1 MGDSQYSFSLTTFSPSGKLVQIEHALTAVGSGQTSLGIKASNGVVIATEKKLPSILVDESSVHKIQSLTPNIGVVYSGMG 80 (222)
Q Consensus 1 ~~~~~~d~~~~~f~p~G~l~q~eya~~a~~~G~t~vgi~~~dgvvla~d~~~~~~l~~~~~~~KI~~i~~~i~~~~sG~~ 80 (222)
||+++||+++|+|||||||+|||||.+|+++|+|+|||+++||||||+|+|.+++++.+++.+||++|++|++++++|..
T Consensus 3 ~~~~~yd~~~t~fsp~Grl~QvEya~~av~~Gtt~vgi~~~dgVvlaaD~r~~~~l~~~~~~~KI~~i~~~i~~~~aG~~ 82 (246)
T 1j2p_A 3 LPQMGYDRAITVFSPDGRLFQVEYAREAVKRGATAIGIKCKEGVILIADKRVGSKLLEKDTIEKIYKIDEHICAATSGLV 82 (246)
T ss_dssp -CCTTSSSCTTCCCTTSCCHHHHHHHHHHHTSCCEEEEEETTEEEEEEECCCSCTTBCGGGCCSEEECSSSEEEEEEECH
T ss_pred ccccCcCCCCceECCCCeehHHHhHHHHHHcCCcEEEEEECCEEEEEEeccCCccccccCccCcEEEECCCEEEEEeEcc
Confidence 67999999999999999999999999999999999999999999999999999888778899999999999999999999
Q ss_pred hhHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHhhcCceeeeeEeEEEEEEeCCCCeEEEECCCCceEeeee
Q 027541 81 PDFRVLVRKSRKQAEQYHRLYKEPIPVTQLVRETAAVMQEFTQSGGVRPFGVSLLVAGYDDKGPQLYQVDPSGSYFSWKA 160 (222)
Q Consensus 81 ~D~~~l~~~~~~~~~~~~~~~~~~i~~~~la~~l~~~~~~~~~~~~~rP~~~~~il~G~d~~g~~L~~id~~G~~~~~~~ 160 (222)
+|++.+.++++.+++.|+++++++++++.+++++++++|.|+++.+.|||++++|||||| +||+||.+||.|++.++++
T Consensus 83 aD~~~l~~~~~~~~~~~~~~~~~~~~v~~la~~l~~~~~~y~~~~~~rp~~v~~lvaG~D-~gp~Ly~idp~G~~~~~~~ 161 (246)
T 1j2p_A 83 ADARVLIDRARIEAQINRLTYDIPITVKELAKKICDFKQQYTQYGGVRPFGVSLLIAGVN-EVPKLYETDPSGALLEYKA 161 (246)
T ss_dssp HHHHHHHHHHHHHHHHHHHHSSSCCCHHHHHHHHHHHHHHTTSBTTBCCCCEEEEEEEES-SSEEEEEECTTCCEEEBSE
T ss_pred HHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHhcccCcccccEEEEEEEEC-CCCEEEEECCCceEEeeeE
Confidence 999999999999999999999999999999999999999999999999999999999999 8999999999999999999
Q ss_pred EEecCCcHHHHHHHHHhccCCCCHHHHHHHHHHHHHhhhccCCCCCcEEEEEEe-eCCceEEC
Q 027541 161 SAMGKNVSNAKTFLEKRYVEEMELDDAVHTAILTLKEGFEGQISEKNIEIGIIG-EKKEFRQY 222 (222)
Q Consensus 161 ~a~G~gs~~~~~~L~~~~~~~~~~~ea~~l~~~~L~~~~~~d~~~~~iei~ii~-~~~~~~~~ 222 (222)
+|+|+|++.++++|++.|+++|+++||++++++||+.+.++..++.+++|++|+ ++++|+++
T Consensus 162 ~aiGsgs~~a~~~Le~~~~~~ms~eea~~la~~al~~~~~~~~sg~~i~v~vi~~~~~~~~~l 224 (246)
T 1j2p_A 162 TAIGMGRMAVTEFFEKEYRDDLSFDDAMVLGLVAMGLSIESELVPENIEVGYVKVDDRTFKEV 224 (246)
T ss_dssp EEESTTHHHHHHHHHHHCCTTCCHHHHHHHHHHHHHHHHTSCCCGGGEEEEEEETTTCCCEEC
T ss_pred EEECCCcHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHhhccCCCCcEEEEEEEcCCCceEEC
Confidence 999999999999999999999999999999999999999985689999999999 76778875
No 4
>1ryp_A 20S proteasome; multicatalytic proteinase, protein degradation, antigen processing, hydrolase, protease; 1.90A {Saccharomyces cerevisiae} SCOP: d.153.1.4 PDB: 1jd2_G* 1g65_G 1vsy_A 2f16_G* 2fak_G* 2fny_G* 2gpl_G* 3d29_G* 3dy3_G* 3dy4_G* 3e47_G* 3gpj_G* 3gpt_G* 3gpw_G* 3hye_G* 3l5q_A 3mg0_G* 3mg4_G* 3oeu_G* 3oev_G* ...
Probab=100.00 E-value=5e-63 Score=408.73 Aligned_cols=218 Identities=30% Similarity=0.521 Sum_probs=212.3
Q ss_pred CCCCCcceeeCCCCcchhhhhHHHHhcc-CCcEEEEEeCCEEEEEEeecCCCCcccCCccceEEEecCcEEEEEecChhh
Q 027541 4 SQYSFSLTTFSPSGKLVQIEHALTAVGS-GQTSLGIKASNGVVIATEKKLPSILVDESSVHKIQSLTPNIGVVYSGMGPD 82 (222)
Q Consensus 4 ~~~d~~~~~f~p~G~l~q~eya~~a~~~-G~t~vgi~~~dgvvla~d~~~~~~l~~~~~~~KI~~i~~~i~~~~sG~~~D 82 (222)
++||+++|+|||||||+|||||.||+++ |+|+|||+++||||||+|+|.+++++.+++.+||++|++|++|+++|..+|
T Consensus 1 ~~yd~~~t~fsp~Grl~QvEYA~~av~~~Gtt~vgi~~~dgVvlaad~r~~~~l~~~~~~~Ki~~i~~~i~~~~aG~~aD 80 (243)
T 1ryp_A 1 AGYDRHITIFSPEGRLYQVEYAFKATNQTNINSLAVRGKDCTVVISQKKVPDKLLDPTTVSYIFCISRTIGMVVNGPIPD 80 (243)
T ss_dssp CGGGGTSSSCCTTSCCHHHHHHHHHTTTTCCCEEEEECSSEEEEEEECCCCCTTBCGGGCCSEEECSSSCEEEEESCHHH
T ss_pred CCCCCCCceECCCCeeHHHHHHHHHHhcCCCcEEEEEeCCEEEEEEEecCCccccCCCcCCceEEECCCEEEEEEecHHH
Confidence 5899999999999999999999999999 999999999999999999999988888899999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHhhcCceeeeeEeEEEEEEeC-CCCeEEEECCCCceEeeeeE
Q 027541 83 FRVLVRKSRKQAEQYHRLYKEPIPVTQLVRETAAVMQEFTQSGGVRPFGVSLLVAGYDD-KGPQLYQVDPSGSYFSWKAS 161 (222)
Q Consensus 83 ~~~l~~~~~~~~~~~~~~~~~~i~~~~la~~l~~~~~~~~~~~~~rP~~~~~il~G~d~-~g~~L~~id~~G~~~~~~~~ 161 (222)
++.+.++++.+++.|+++++++++++.+++++++++|.|++++++|||+|++||||||+ +||+||++||.|++.+++++
T Consensus 81 ~~~l~~~~r~~~~~~~~~~~~~~~v~~la~~l~~~l~~y~~~~~~rP~~v~~lvaG~D~~~gp~Ly~~dp~G~~~~~~~~ 160 (243)
T 1ryp_A 81 ARNAALRAKAEAAEFRYKYGYDMPCDVLAKRMANLSQIYTQRAYMRPLGVILTFVSVDEELGPSIYKTDPAGYYVGYKAT 160 (243)
T ss_dssp HHHHHHHHHHHHHHHHHHHSSCCCHHHHHHHHHHHHHHHHHBTTSCCCSCEEEEEEEETTTEEEEEEECTTSCEEEBSEE
T ss_pred HHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHhccCCccccceEEEEEEEcCCCCcEEEEEcCCCCEEEEEEE
Confidence 99999999999999999999999999999999999999999988999999999999997 78999999999999999999
Q ss_pred EecCCcHHHHHHHHHhccC-------CCCHHHHHHHHHHHHHhhhccCCCCCcEEEEEEeeCCceEEC
Q 027541 162 AMGKNVSNAKTFLEKRYVE-------EMELDDAVHTAILTLKEGFEGQISEKNIEIGIIGEKKEFRQY 222 (222)
Q Consensus 162 a~G~gs~~~~~~L~~~~~~-------~~~~~ea~~l~~~~L~~~~~~d~~~~~iei~ii~~~~~~~~~ 222 (222)
|+|++++.++++||+.|++ +|+++||++++++||..+.++|.++.+++|++|+++| |+++
T Consensus 161 a~G~gs~~a~~~Le~~~~~~~~~~~~~ms~eea~~l~~~al~~~~~rd~s~~~iev~vi~~~g-~~~l 227 (243)
T 1ryp_A 161 ATGPKQQEITTNLENHFKKSKIDHINEESWEKVVEFAITHMIDALGTEFSKNDLEVGVATKDK-FFTL 227 (243)
T ss_dssp EESTTHHHHHHHHHHHHHHHCSSSCCCSSHHHHHHHHHHHHHHHHTCCCCTTSEEEEEEETTE-EEEC
T ss_pred EECCCcHHHHHHHHHHhhhcccccccCCCHHHHHHHHHHHHHHHhcccCCCCcEEEEEEECCC-eEEC
Confidence 9999999999999999999 9999999999999999999999899999999999998 8874
No 5
>1iru_E 20S proteasome; cell cycle, immune response, proteolysis, ubiquitin, hydrolase; 2.75A {Bos taurus} SCOP: d.153.1.4 PDB: 3unb_D* 3une_D 3unf_D* 3unh_D
Probab=100.00 E-value=6.3e-63 Score=407.67 Aligned_cols=222 Identities=33% Similarity=0.621 Sum_probs=210.4
Q ss_pred CCCCCCCCcceeeCCCCcchhhhhHHHHhccCCcEEEEEeCCEEEEEEeecCCCCcccCCccceEEEecCcEEEEEecCh
Q 027541 1 MGDSQYSFSLTTFSPSGKLVQIEHALTAVGSGQTSLGIKASNGVVIATEKKLPSILVDESSVHKIQSLTPNIGVVYSGMG 80 (222)
Q Consensus 1 ~~~~~~d~~~~~f~p~G~l~q~eya~~a~~~G~t~vgi~~~dgvvla~d~~~~~~l~~~~~~~KI~~i~~~i~~~~sG~~ 80 (222)
|++++||+++|+|||||||+|||||.+|+++|+|+|||+++||||||+|+|.++.++.+++.+||++|++|++++++|..
T Consensus 3 m~~~~yd~~~t~fsp~Grl~QvEya~~av~~Gtt~vgi~~~dgVvlaaD~r~~~g~~~~~~~~Ki~~i~~~i~~~~aG~~ 82 (241)
T 1iru_E 3 LTRSEYDRGVNTFSPEGRLFQVEYDIEAIKLGSTAIGIQTSEGVCLAVEKRITSPLMEPSSIEKIVEIDAHIGCAMSGLI 82 (241)
T ss_dssp -----CCCCTTCBCTTSCBHHHHHHHHHHTTSCCEEEEEETTEEEEEEECCCCCTTBCTTSCCSEEEEETTEEEEEEECH
T ss_pred CccCCCCCCCceECCCCccHHHHHHHHHHHcCCcEEEEEcCCEEEEEEecccCCcCcCccccceEEEEcCCEEEEEeeCh
Confidence 56889999999999999999999999999999999999999999999999999876668899999999999999999999
Q ss_pred hhHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHhhcCc-----eeeeeEeEEEEEEeCCCCeEEEECCCCce
Q 027541 81 PDFRVLVRKSRKQAEQYHRLYKEPIPVTQLVRETAAVMQEFTQSGG-----VRPFGVSLLVAGYDDKGPQLYQVDPSGSY 155 (222)
Q Consensus 81 ~D~~~l~~~~~~~~~~~~~~~~~~i~~~~la~~l~~~~~~~~~~~~-----~rP~~~~~il~G~d~~g~~L~~id~~G~~ 155 (222)
+|++.+.++++.+++.|+.+++++++++.+++++++++|.|+++.+ .|||++++||||||++||+||.+||.|++
T Consensus 83 aD~~~l~~~~~~~~~~~~~~~~~~~~v~~~a~~l~~~~~~y~~~~~~~~l~~rp~~v~~lvaG~D~~gp~Ly~idp~G~~ 162 (241)
T 1iru_E 83 ADAKTLIDKARVETQNHWFTYNETMTVESVTQAVSNLALQFGEEDADPGAMSRPFGVALLFGGVDEKGPQLFHMDPSGTF 162 (241)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHSSCCCHHHHHHHHHTTTTCBCSTTCCSSCBSSCCCEEEEEEEEETTEEEEEEECTTSCE
T ss_pred HHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHhccccccccccccceEEEEEEEEeCCCCEEEEECCCCcE
Confidence 9999999999999999999999999999999999999999998887 89999999999999888999999999999
Q ss_pred EeeeeEEecCCcHHHHHHHHHhccCCCCHHHHHHHHHHHHHhhhccCCCCCcEEEEEEeeCCceEEC
Q 027541 156 FSWKASAMGKNVSNAKTFLEKRYVEEMELDDAVHTAILTLKEGFEGQISEKNIEIGIIGEKKEFRQY 222 (222)
Q Consensus 156 ~~~~~~a~G~gs~~~~~~L~~~~~~~~~~~ea~~l~~~~L~~~~~~d~~~~~iei~ii~~~~~~~~~ 222 (222)
.+++++|+|+|++.++++||+.|+++|+++||++++++||+.+.++..++.+++|++|+++|+|++|
T Consensus 163 ~~~~~~aiGsgs~~a~~~Le~~~~~~ms~eea~~la~~al~~~~~~~~sg~~i~v~vi~~~~~~~~l 229 (241)
T 1iru_E 163 VQCDARAIGSASEGAQSSLQELYHKSMTLKEAIKSSLIILKQVMEEKLNATNIELATVQPGQNFHMF 229 (241)
T ss_dssp EEBSEEEESTTHHHHHHHHHHHCCTTCCHHHHHHHHHHHHHHHCSSCCCTTSEEEEEECSSSCCEEC
T ss_pred EecceEEECCCcHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHhhccCCCCCEEEEEEECCCCeEEC
Confidence 9999999999999999999999999999999999999999999999768999999999999988875
No 6
>3h4p_A Proteasome subunit alpha; core particle, cytoplasm, hydrolase, protease, threonine protease; 4.10A {Methanocaldococcus jannaschii}
Probab=100.00 E-value=4.8e-63 Score=412.77 Aligned_cols=220 Identities=37% Similarity=0.640 Sum_probs=206.5
Q ss_pred CCCCCCCcceeeCCCCcchhhhhHHHHhccCCcEEEEEeCCEEEEEEeecCCCCcccCCccceEEEecCcEEEEEecChh
Q 027541 2 GDSQYSFSLTTFSPSGKLVQIEHALTAVGSGQTSLGIKASNGVVIATEKKLPSILVDESSVHKIQSLTPNIGVVYSGMGP 81 (222)
Q Consensus 2 ~~~~~d~~~~~f~p~G~l~q~eya~~a~~~G~t~vgi~~~dgvvla~d~~~~~~l~~~~~~~KI~~i~~~i~~~~sG~~~ 81 (222)
..++||+++|+|||||||+|||||.+|+++|+|+|||+++||||||+|+|.+++++.+++.+||++|++|++|+++|..+
T Consensus 8 ~~~~yd~~~t~fSp~Grl~QvEYA~~av~~Gtt~vgi~~~dgVVlaaD~r~~~~li~~~~~~KI~~i~d~i~~~~aG~~a 87 (264)
T 3h4p_A 8 PPSAYDRAITVFSPEGRLYQVEYAREAVRRGTTAIGIACKDGVVLAVDRRITSKLVKIRSIEKIFQIDDHVAAATSGLVA 87 (264)
T ss_dssp --------CCCCCSSSSCHHHHHHHHHHHHSCCEEEECCSSEEEEEEECCCCSTTBCTTTCCCEEEEETTEEEEEEECSH
T ss_pred CccccCCCcceECCCCeeHHHHhHHHHHhcCCcEEEEEECCEEEEEEecCccCCccccCccccEEEecCcEEEEeccchH
Confidence 47899999999999999999999999999999999999999999999999998888889999999999999999999999
Q ss_pred hHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHhhcCceeeeeEeEEEEEEeCCCCeEEEECCCCceEeeeeE
Q 027541 82 DFRVLVRKSRKQAEQYHRLYKEPIPVTQLVRETAAVMQEFTQSGGVRPFGVSLLVAGYDDKGPQLYQVDPSGSYFSWKAS 161 (222)
Q Consensus 82 D~~~l~~~~~~~~~~~~~~~~~~i~~~~la~~l~~~~~~~~~~~~~rP~~~~~il~G~d~~g~~L~~id~~G~~~~~~~~ 161 (222)
|++.+.++++.+++.|++.++++++++.+|+++++++|.|++++++|||+|++||||||+.||+||.+||.|++.+++++
T Consensus 88 D~~~l~~~~r~~~~~y~~~~~~~i~v~~la~~l~~~~~~yt~~~~~rP~~v~~lvaG~D~~gp~Ly~iDp~G~~~~~~~~ 167 (264)
T 3h4p_A 88 DARVLIDRARLEAQIYRLTYGEEISIEMLAKKICDIKQAYTQHGGVRPFGVSLLIAGIDKNEARLFETDPSGALIEYKAT 167 (264)
T ss_dssp HHHHHHTTHHHHHHHHHHTTCSCCCHHHHHHHHHHHHHHTTSBSSCCCCSEEEEEEEEETTEEEEEEECTTCCCEEESEE
T ss_pred HHHHHHHHHHHHHHhhHHhcCCCCCHHHHHHHHHHHHHHHhhccCCCCeeEEEEEEEEeCCcCEEEEECCCceEEecCeE
Confidence 99999999999999999999999999999999999999999999999999999999999989999999999999999999
Q ss_pred EecCCcHHHHHHHHHhccCCCCHHHHHHHHHHHHHhhhccCCCCCcEEEEEEeeC-CceEEC
Q 027541 162 AMGKNVSNAKTFLEKRYVEEMELDDAVHTAILTLKEGFEGQISEKNIEIGIIGEK-KEFRQY 222 (222)
Q Consensus 162 a~G~gs~~~~~~L~~~~~~~~~~~ea~~l~~~~L~~~~~~d~~~~~iei~ii~~~-~~~~~~ 222 (222)
|+|++++.++++|++.|+++|+++||++++++||+.+.++ .++.+++|++|+++ .+|++|
T Consensus 168 aiGsgs~~a~~~Le~~~~~~ms~eea~~la~~al~~a~~~-~sg~~iev~vi~~~~~~~~~l 228 (264)
T 3h4p_A 168 AIGSGRPVVMELLEKEYRDDITLDEGLELAITALTKANED-IKPENVDVCIITVKDAQFKKI 228 (264)
T ss_dssp EESTTHHHHTTTHHHHCCTTCCSHHHHHHHHHHHHHHSSS-CCTTSEEEEEEETTTTEEEEC
T ss_pred EECCCHHHHHHHHHHhccCCCCHHHHHHHHHHHHHHHHhc-cCCCeEEEEEEEeCCCcEEEC
Confidence 9999999999999999999999999999999999999998 89999999999986 468875
No 7
>1iru_F 20S proteasome; cell cycle, immune response, proteolysis, ubiquitin, hydrolase; 2.75A {Bos taurus} SCOP: d.153.1.4 PDB: 3unb_E* 3une_E 3unf_E* 3unh_E
Probab=100.00 E-value=2e-62 Score=409.19 Aligned_cols=220 Identities=35% Similarity=0.611 Sum_probs=210.1
Q ss_pred CCCCCCCCcceeeCCCCcchhhhhHHHHhccCCcEEEEEeCCEEEEEEeecCCCCcccCCccceEEEecCcEEEEEecCh
Q 027541 1 MGDSQYSFSLTTFSPSGKLVQIEHALTAVGSGQTSLGIKASNGVVIATEKKLPSILVDESSVHKIQSLTPNIGVVYSGMG 80 (222)
Q Consensus 1 ~~~~~~d~~~~~f~p~G~l~q~eya~~a~~~G~t~vgi~~~dgvvla~d~~~~~~l~~~~~~~KI~~i~~~i~~~~sG~~ 80 (222)
|++++||+++|+|||||||+|||||.||+++|+|+|||+++||||||+|+|.++.+. ++.+||++|++||+|+++|..
T Consensus 1 m~~~~yd~~~t~fsP~Grl~QvEYA~~av~~Gtt~vgi~~~dgVVlaaD~r~~~gl~--~~~~KI~~i~~~i~~~~aG~~ 78 (263)
T 1iru_F 1 MFRNQYDNDVTVWSPQGRIHQIEYAMEAVKQGSATVGLKSKTHAVLVALKRAQSELA--AHQKKILHVDNHIGISIAGLT 78 (263)
T ss_dssp ---CTTTSCTTCCCTTSCCHHHHHHHHHHHHSCCEEEEECSSEEEEEEECCCSSTTB--CCCCCEEEEETTEEEEEEECH
T ss_pred CCcCCCCCCCccCCCCCeehHHHHHHHHHHcCCcEEEEEeCCEEEEEEecccccccc--cchhcEEEEcCCEEEEEeCCH
Confidence 899999999999999999999999999999999999999999999999999998764 478999999999999999999
Q ss_pred hhHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHhhcCceeeeeEeEEEEEEeCCCCeEEEECCCCceEeeee
Q 027541 81 PDFRVLVRKSRKQAEQYHRLYKEPIPVTQLVRETAAVMQEFTQSGGVRPFGVSLLVAGYDDKGPQLYQVDPSGSYFSWKA 160 (222)
Q Consensus 81 ~D~~~l~~~~~~~~~~~~~~~~~~i~~~~la~~l~~~~~~~~~~~~~rP~~~~~il~G~d~~g~~L~~id~~G~~~~~~~ 160 (222)
+|++.+.++++.+++.|+++++++++++.+++++++++|.|+++.+.|||+|++||||||++||+||.+||.|++.++++
T Consensus 79 aD~~~l~~~~~~~~~~~~~~~~~~i~v~~la~~l~~~l~~~t~~~~~RP~~v~~lvaG~D~~gp~Ly~idp~G~~~~~~~ 158 (263)
T 1iru_F 79 ADARLLCNFMRQECLDSRFVFDRPLPVSRLVSLIGSKTQIPTQRYGRRPYGVGLLIAGYDDMGPHIFQTCPSANYFDCRA 158 (263)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHSSCCCHHHHHHHHHHHHHHHHHBTTCCCCCEEEEEEEEETTEEEEEEECSSSCEEEESE
T ss_pred HHHHHHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHhhcccccccceEEEEEEEEcCCCCEEEEECCCCCEEEeeE
Confidence 99999999999999999999999999999999999999999999889999999999999998999999999999999999
Q ss_pred EEecCCcHHHHHHHHHhccC--CCCHHHHHHHHHHHHHhhhccC--CCCCcEEEEEEeeCCceEEC
Q 027541 161 SAMGKNVSNAKTFLEKRYVE--EMELDDAVHTAILTLKEGFEGQ--ISEKNIEIGIIGEKKEFRQY 222 (222)
Q Consensus 161 ~a~G~gs~~~~~~L~~~~~~--~~~~~ea~~l~~~~L~~~~~~d--~~~~~iei~ii~~~~~~~~~ 222 (222)
+|+|++++.++++||+.|++ +|+++||++++++||+.+.++| .++.+++|++|+++++|+++
T Consensus 159 ~aiGsgs~~a~~~Le~~~~~~~~ms~eea~~la~~al~~~~~rd~~~sg~~iev~vi~~~~~~~~l 224 (263)
T 1iru_F 159 MSIGARSQSARTYLERHMSEFMECNLNELVKHGLRALRETLPAEQDLTTKNVSIGIVGKDLEFTIY 224 (263)
T ss_dssp EEESTTHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTTSCTTCCCCTTTEEEEEEETTEEEEEE
T ss_pred EEcCcccHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHHHHhccccCCCCcEEEEEEECCCCeEEC
Confidence 99999999999999999998 9999999999999999999998 58999999999999778864
No 8
>1iru_A 20S proteasome; cell cycle, immune response, proteolysis, ubiquitin, hydrolase; 2.75A {Bos taurus} SCOP: d.153.1.4 PDB: 3unb_G* 3une_G 3unf_G* 3unh_G
Probab=100.00 E-value=7.8e-62 Score=402.27 Aligned_cols=219 Identities=34% Similarity=0.611 Sum_probs=213.0
Q ss_pred CCCCCcceeeCCCCcchhhhhHHHHhcc-CCcEEEEEeCCEEEEEEeecCCCCcccCCccceEEEecCcEEEEEecChhh
Q 027541 4 SQYSFSLTTFSPSGKLVQIEHALTAVGS-GQTSLGIKASNGVVIATEKKLPSILVDESSVHKIQSLTPNIGVVYSGMGPD 82 (222)
Q Consensus 4 ~~~d~~~~~f~p~G~l~q~eya~~a~~~-G~t~vgi~~~dgvvla~d~~~~~~l~~~~~~~KI~~i~~~i~~~~sG~~~D 82 (222)
++||+++|+|||||||+|||||.+|+++ |+|+|||+++||||||+|+|.+++++.+++.+||++|++|++++++|..+|
T Consensus 7 ~~yd~~~t~fsp~Grl~QvEya~~av~~~Gtt~vgi~~~dgVvlaaD~r~~~~l~~~~~~~Ki~~i~~~i~~~~aG~~aD 86 (246)
T 1iru_A 7 AGFDRHITIFSPEGRLYQVEYAFKAINQGGLTSVAVRGKDCAVIVTQKKVPDKLLDSSTVTHLFKITENIGCVMTGMTAD 86 (246)
T ss_dssp CTTTTTSSCCCTTSCCHHHHHHHHHHHTTCCEEEEEECSSEEEEEEECCCCCSSBCGGGCCSEEESSSSCEEEEEECHHH
T ss_pred CCcCCCCccCCCCCeehHHHHHHHHHhcCCCCEEEEEeCCEEEEEEeecCCCcccCCCccCceEEECCCEEEEEeccHHH
Confidence 6999999999999999999999999999 999999999999999999999988888899999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHhhcCceeeeeEeEEEEEEeC-CCCeEEEECCCCceEeeeeE
Q 027541 83 FRVLVRKSRKQAEQYHRLYKEPIPVTQLVRETAAVMQEFTQSGGVRPFGVSLLVAGYDD-KGPQLYQVDPSGSYFSWKAS 161 (222)
Q Consensus 83 ~~~l~~~~~~~~~~~~~~~~~~i~~~~la~~l~~~~~~~~~~~~~rP~~~~~il~G~d~-~g~~L~~id~~G~~~~~~~~ 161 (222)
++.+.++++.+++.|+++++++++++.+++++++++|.|+++.+.|||++++||||||+ .||+||.+||.|++.+++++
T Consensus 87 ~~~l~~~~~~~~~~~~~~~~~~~~~~~la~~l~~~~~~y~~~~~~rp~~v~~lvaG~D~~~gp~Ly~idp~G~~~~~~~~ 166 (246)
T 1iru_A 87 SRSQVQRARYEAANWKYKYGYEIPVDMLCKRIADISQVYTQNAEMRPLGCCMILIGIDEEQGPQVYKCDPAGYYCGFKAT 166 (246)
T ss_dssp HHHHHHHHHHHHHHHHHHHSSCCCHHHHHHHHHHHHHHHHHBSSBCCCSEEEEEEEEETTTEEEEEEECTTSCEEEBSEE
T ss_pred HHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHhcCCCCCCcceEEEEEEEeCCCCeEEEEEcCCeeEEEeeEE
Confidence 99999999999999999999999999999999999999999988999999999999997 78999999999999999999
Q ss_pred EecCCcHHHHHHHHHhccC--CCCHHHHHHHHHHHHHhhhccCCCCCcEEEEEEeeCCc-eEEC
Q 027541 162 AMGKNVSNAKTFLEKRYVE--EMELDDAVHTAILTLKEGFEGQISEKNIEIGIIGEKKE-FRQY 222 (222)
Q Consensus 162 a~G~gs~~~~~~L~~~~~~--~~~~~ea~~l~~~~L~~~~~~d~~~~~iei~ii~~~~~-~~~~ 222 (222)
|+|+|++.++++||+.|++ +|+++||++++++||+.+.++|.++.+++|++|+++|. |+++
T Consensus 167 aiG~gs~~a~~~Le~~~~~~~~ms~eea~~la~~al~~~~~rd~sg~~i~v~vi~~~g~~~~~l 230 (246)
T 1iru_A 167 AAGVKQTESTSFLEKKVKKKFDWTFEQTVETAITCLSTVLSIDFKPSEIEVGVVTVENPKFRIL 230 (246)
T ss_dssp EEETTHHHHHHHHHHHTTSCCCCCHHHHHHHHHHHHHHHTTCCCCTTSEEEEEEETTEEEEEEC
T ss_pred EECCCcHHHHHHHHHhhcccCCCCHHHHHHHHHHHHHHHhcccCCCCcEEEEEEECCCCeEEEC
Confidence 9999999999999999999 99999999999999999999998899999999999987 8874
No 9
>1ryp_F 20S proteasome; multicatalytic proteinase, protein degradation, antigen processing, hydrolase, protease; 1.90A {Saccharomyces cerevisiae} SCOP: d.153.1.4 PDB: 1jd2_E* 1g65_E 2f16_E* 2fak_E* 2fny_E* 2gpl_E* 3d29_E* 3dy3_E* 3dy4_E* 3e47_E* 3gpj_E* 3gpt_E* 3gpw_E* 3hye_E* 3mg0_E* 3mg4_E* 3oeu_E* 3oev_E* 3okj_E* 3shj_E* ...
Probab=100.00 E-value=3.6e-62 Score=401.24 Aligned_cols=218 Identities=29% Similarity=0.493 Sum_probs=209.5
Q ss_pred CCCCCCCcceeeCCCCcchhhhhHHHHhccCCcEEEEEeCCEEEEEEeecCCCCcccCCccceEEEecCcEEEEEecChh
Q 027541 2 GDSQYSFSLTTFSPSGKLVQIEHALTAVGSGQTSLGIKASNGVVIATEKKLPSILVDESSVHKIQSLTPNIGVVYSGMGP 81 (222)
Q Consensus 2 ~~~~~d~~~~~f~p~G~l~q~eya~~a~~~G~t~vgi~~~dgvvla~d~~~~~~l~~~~~~~KI~~i~~~i~~~~sG~~~ 81 (222)
|+++||+++|+|||||||+|||||++|+++|+|+|||+++||||||+|+|.++.+. ++.+||++|++|++++++|..+
T Consensus 1 ~~~~yd~~~t~fsp~Grl~QvEyA~~av~~Gtt~vgi~~~dgVvlaaD~r~~~~l~--~~~~Ki~~i~~~i~~~~aG~~a 78 (233)
T 1ryp_F 1 FRNNYDGDTVTFSPTGRLFQVEYALEAIKQGSVTVGLRSNTHAVLVALKRNADELS--SYQKKIIKCDEHMGLSLAGLAP 78 (233)
T ss_dssp CHHHHSSCTTCCCTTSCCHHHHHHHHHHHTSCCEEEEECSSEEEEEEECCCSSTTB--CCCCCEEEEETTEEEEEEECHH
T ss_pred CCCcccCCCccCCCCCeehHHHHHHHHHHcCCCEEEEEcCCEEEEEEEeccccccc--cccCcEEEEcCCEEEEEEechH
Confidence 56789999999999999999999999999999999999999999999999998764 4789999999999999999999
Q ss_pred hHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHhhcCceeeeeEeEEEEEEeCCCCeEEEECCCCceEeeeeE
Q 027541 82 DFRVLVRKSRKQAEQYHRLYKEPIPVTQLVRETAAVMQEFTQSGGVRPFGVSLLVAGYDDKGPQLYQVDPSGSYFSWKAS 161 (222)
Q Consensus 82 D~~~l~~~~~~~~~~~~~~~~~~i~~~~la~~l~~~~~~~~~~~~~rP~~~~~il~G~d~~g~~L~~id~~G~~~~~~~~ 161 (222)
|++.+.++++.+++.|+++++++++++.+++++++++|.|+++.+.|||++++||||||++||+||.+||.|++.+++++
T Consensus 79 D~~~l~~~~~~~~~~~~~~~~~~~~v~~la~~l~~~~~~~t~~~~~rp~~v~~lvaG~D~~gp~Ly~idp~G~~~~~~~~ 158 (233)
T 1ryp_F 79 DARVLSNYLRQQCNYSSLVFNRKLAVERAGHLLCDKAQKNTQSYGGRPYGVGLLIIGYDKSGAHLLEFQPSGNVTELYGT 158 (233)
T ss_dssp HHHHHHHHHHHHHHHHHHHHSCCCCHHHHHHHHHHHHHHHHHBTTCCCCCEEEEEEEEETTEEEEEEECTTSCEEEESEE
T ss_pred HHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHhcccCCcCcceEEEEEEEeCCcCEEEEECCCCCeeeeeEE
Confidence 99999999999999999999999999999999999999999999999999999999999989999999999999999999
Q ss_pred EecCCcHHHHHHHHHhccC--CC--CHHHHHHHHHHHHHhhhccC--CCCCcEEEEEEeeCCceEEC
Q 027541 162 AMGKNVSNAKTFLEKRYVE--EM--ELDDAVHTAILTLKEGFEGQ--ISEKNIEIGIIGEKKEFRQY 222 (222)
Q Consensus 162 a~G~gs~~~~~~L~~~~~~--~~--~~~ea~~l~~~~L~~~~~~d--~~~~~iei~ii~~~~~~~~~ 222 (222)
|+|+|++.++++||+.|++ +| +++||++++++||+.+. +| .++.+++|++|+++++|+++
T Consensus 159 aiG~gs~~a~~~Le~~~~~~~~m~~s~eea~~~a~~al~~~~-~d~~~s~~~i~v~vi~~~~~~~~l 224 (233)
T 1ryp_F 159 AIGARSQGAKTYLERTLDTFIKIDGNPDELIKAGVEAISQSL-RDESLTVDNLSIAIVGKDTPFTIY 224 (233)
T ss_dssp EESTTHHHHHHHHHHHHHHHTTCCSCHHHHHHHHHHHHTTSC-CSSCCCTTTEEEEEEETTEEEEEE
T ss_pred EECCCcHHHHHHHHHHhccccccCCCHHHHHHHHHHHHHHHh-hcccCCCCcEEEEEEECCCCEEEC
Confidence 9999999999999999999 99 99999999999999999 55 58999999999999779874
No 10
>1ryp_C 20S proteasome; multicatalytic proteinase, protein degradation, antigen processing, hydrolase, protease; 1.90A {Saccharomyces cerevisiae} SCOP: d.153.1.4 PDB: 1jd2_B* 1g65_B 2f16_B* 2fak_B* 2fny_B* 2gpl_B* 3d29_B* 3dy3_B* 3dy4_B* 3e47_B* 3gpj_B* 3gpt_B* 3gpw_B* 3hye_B* 3mg0_B* 3mg4_B* 3okj_B* 3shj_B* 3tdd_B* 3nzj_B* ...
Probab=100.00 E-value=2.6e-61 Score=398.72 Aligned_cols=219 Identities=38% Similarity=0.679 Sum_probs=211.5
Q ss_pred CCCCCcceeeCCCCcchhhhhHHHHhccCCcEEEEEeCCEEEEEEeecCCCCccc-CCccceEEEecCcEEEEEecChhh
Q 027541 4 SQYSFSLTTFSPSGKLVQIEHALTAVGSGQTSLGIKASNGVVIATEKKLPSILVD-ESSVHKIQSLTPNIGVVYSGMGPD 82 (222)
Q Consensus 4 ~~~d~~~~~f~p~G~l~q~eya~~a~~~G~t~vgi~~~dgvvla~d~~~~~~l~~-~~~~~KI~~i~~~i~~~~sG~~~D 82 (222)
.+||+++|+|||||||+|||||++|+++|+|+|||+++||||||+|+|.+++++. +++.+||++|++|++|+++|..+|
T Consensus 3 ~~yd~~~t~fsp~Grl~QvEyA~~av~~Gtt~vgi~~~dgVvlaaD~r~~~g~~~~~~~~~Ki~~i~~~i~~~~aG~~aD 82 (244)
T 1ryp_C 3 RRYDSRTTIFSPEGRLYQVEYALESISHAGTAIGIMASDGIVLAAERKVTSTLLEQDTSTEKLYKLNDKIAVAVAGLTAD 82 (244)
T ss_dssp GGGCCCTTCBCTTSCBHHHHHHHHHHTTSCCEEEEEETTEEEEEEECSSCCSSBCSTTCCSSEEESSSSEEEEEEECHHH
T ss_pred CccCCCCceECcCCeeHHHHhHHHHHhcCCcEEEEEeCCEEEEEEeeccCCcCccCCCCCCcEEEECCCEEEEEEEcHHH
Confidence 3899999999999999999999999999999999999999999999999987666 889999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHhhcCceeeeeEeEEEEEEe-CCCCeEEEECCCCceEeeeeE
Q 027541 83 FRVLVRKSRKQAEQYHRLYKEPIPVTQLVRETAAVMQEFTQSGGVRPFGVSLLVAGYD-DKGPQLYQVDPSGSYFSWKAS 161 (222)
Q Consensus 83 ~~~l~~~~~~~~~~~~~~~~~~i~~~~la~~l~~~~~~~~~~~~~rP~~~~~il~G~d-~~g~~L~~id~~G~~~~~~~~ 161 (222)
++.+.++++.+++.|+++++++++++.+++++++++|.|+++.+.|||++++|||||| ++||+||.+||.|++.+++++
T Consensus 83 ~~~l~~~~~~~~~~~~~~~~~~~~v~~la~~l~~~~~~~~~~~~~rp~~v~~lvaG~D~~~gp~Ly~idp~G~~~~~~~~ 162 (244)
T 1ryp_C 83 AEILINTARIHAQNYLKTYNEDIPVEILVRRLSDIKQGYTQHGGLRPFGVSFIYAGYDDRYGYQLYTSNPSGNYTGWKAI 162 (244)
T ss_dssp HHHHHHHHHHHHHHHHHHHSSCCCHHHHHHHHHHHHHHHHHBSSCCCCCEEEEEEEEETTTEEEEEEECTTCCEEEBSEE
T ss_pred HHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHhccCCccceEEEEEEEEEcCCCCCEEEEECCCccEEeeeEE
Confidence 9999999999999999999999999999999999999999998999999999999999 678999999999999999999
Q ss_pred EecCCcHHHHHHHHHhccCCCCHHHHHHHHHHHHHhhhcc-CCCCCcEEEEEEe--eCCc---eEEC
Q 027541 162 AMGKNVSNAKTFLEKRYVEEMELDDAVHTAILTLKEGFEG-QISEKNIEIGIIG--EKKE---FRQY 222 (222)
Q Consensus 162 a~G~gs~~~~~~L~~~~~~~~~~~ea~~l~~~~L~~~~~~-d~~~~~iei~ii~--~~~~---~~~~ 222 (222)
|+|+|++.++++||+.|+++|+++||++++++||+.+.++ ++++.+++|++|+ ++++ |++|
T Consensus 163 aiGsgs~~a~~~Le~~~~~~ms~eea~~la~~al~~~~~rd~~sg~~i~v~vi~~~~~~~~~~~~~l 229 (244)
T 1ryp_C 163 SVGANTSAAQTLLQMDYKDDMKVDDAIELALKTLSKTTDSSALTYDRLEFATIRKGANDGEVYQKIF 229 (244)
T ss_dssp EESTTHHHHHHHHHHHCCTTCCHHHHHHHHHHHHHHHCSSSSCCGGGEEEEEEECCSSSSSCEEEEC
T ss_pred EECCCcHHHHHHHHHhhhcCCCHHHHHHHHHHHHHHHhccccCCCCcEEEEEEEeecCCCceeEEEC
Confidence 9999999999999999999999999999999999999999 5789999999999 9986 8875
No 11
>1ryp_D 20S proteasome; multicatalytic proteinase, protein degradation, antigen processing, hydrolase, protease; 1.90A {Saccharomyces cerevisiae} SCOP: d.153.1.4 PDB: 1jd2_C* 1g65_C 2f16_C* 2fak_C* 2fny_C* 2gpl_C* 3d29_C* 3dy3_C* 3dy4_C* 3e47_C* 3gpj_C* 3gpt_C* 3gpw_C* 3hye_C* 3mg0_C* 3mg4_C* 3oeu_C* 3oev_C* 3okj_C* 3shj_C* ...
Probab=100.00 E-value=5.8e-61 Score=395.93 Aligned_cols=216 Identities=37% Similarity=0.641 Sum_probs=208.4
Q ss_pred CCCCcceeeCCCCcchhhhhHHHHhccCCcEEEEEeCCEEEEEEeecCCCCcccCC-ccceEEEecCcEEEEEecChhhH
Q 027541 5 QYSFSLTTFSPSGKLVQIEHALTAVGSGQTSLGIKASNGVVIATEKKLPSILVDES-SVHKIQSLTPNIGVVYSGMGPDF 83 (222)
Q Consensus 5 ~~d~~~~~f~p~G~l~q~eya~~a~~~G~t~vgi~~~dgvvla~d~~~~~~l~~~~-~~~KI~~i~~~i~~~~sG~~~D~ 83 (222)
+||+++|+|||||||+|||||.||+++|+|+|||+++||||||+|+|.++.++..+ +.+||++|++|++|+++|..+|+
T Consensus 1 ~yd~~~t~fsp~Grl~QvEya~~av~~Gtt~vgi~~~dgVvlaaD~r~~~g~~~~~~~~~Ki~~i~~~i~~~~aG~~aD~ 80 (241)
T 1ryp_D 1 GYDRALSIFSPDGHIFQVEYALEAVKRGTCAVGVKGKNCVVLGCERRSTLKLQDTRITPSKVSKIDSHVVLSFSGLNADS 80 (241)
T ss_dssp CCCCCCSCCBTTTBCHHHHHHHHHHTTSCCEEEEECSSCEEEEEECCCSSCCBCTTTSCCSEEEEETTEEEEEEECHHHH
T ss_pred CCCCCceeECCCCcchHHHHHHHHHHcCCCEEEEEeCCEEEEEEeeccCccCccccCCcCcEEEecCCEEEEEeecHHHH
Confidence 69999999999999999999999999999999999999999999999998765554 99999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHhhcCceeeeeEeEEEEEEeC--CCCeEEEECCCCceEeeeeE
Q 027541 84 RVLVRKSRKQAEQYHRLYKEPIPVTQLVRETAAVMQEFTQSGGVRPFGVSLLVAGYDD--KGPQLYQVDPSGSYFSWKAS 161 (222)
Q Consensus 84 ~~l~~~~~~~~~~~~~~~~~~i~~~~la~~l~~~~~~~~~~~~~rP~~~~~il~G~d~--~g~~L~~id~~G~~~~~~~~ 161 (222)
+.+.++++.+++.|+++++++++++.+++++++++|.+++++++|||++++||||||+ .||+||.+||.|++.+++++
T Consensus 81 ~~l~~~~~~~~~~~~~~~~~~~~v~~la~~l~~~~~~~~~~~~~rP~~v~~lvaG~D~~~~gp~Ly~idp~G~~~~~~~~ 160 (241)
T 1ryp_D 81 RILIEKARVEAQSHRLTLEDPVTVEYLTRYVAGVQQRYTQSGGVRPFGVSTLIAGFDPRDDEPKLYQTEPSGIYSSWSAQ 160 (241)
T ss_dssp HHHHHHHHHHHHHHHHHHSSCCCHHHHHHHHHHHHHHTTSSTTBCCCSEEEEEEECCTTCCSCEEEEECTTSCEEEBSEE
T ss_pred HHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHccCCCCCCcceeeEEEEEcCCCCCeeEEEECCCCCEEEeeeE
Confidence 9999999999999999999999999999999999999999988999999999999998 78999999999999999999
Q ss_pred EecCCcHHHHHHHHHhc---cCCCCHHHHHHHHHHHHHhhhccCCCCCcEEEEEEeeCCceEEC
Q 027541 162 AMGKNVSNAKTFLEKRY---VEEMELDDAVHTAILTLKEGFEGQISEKNIEIGIIGEKKEFRQY 222 (222)
Q Consensus 162 a~G~gs~~~~~~L~~~~---~~~~~~~ea~~l~~~~L~~~~~~d~~~~~iei~ii~~~~~~~~~ 222 (222)
|+|+|++.++++||+.| +++|+++||++++++||+.+.+ .++.+++|++|+++++|+++
T Consensus 161 aiG~gs~~a~~~Le~~~~~~~~~ms~eea~~l~~~al~~~~~--~sg~~i~v~vi~~~~~~~~l 222 (241)
T 1ryp_D 161 TIGRNSKTVREFLEKNYDRKEPPATVEECVKLTVRSLLEVVQ--TGAKNIEITVVKPDSDIVAL 222 (241)
T ss_dssp EESTTHHHHHHHHHTTCCTTSCCCSHHHHHHHHHHHHHHHHC--SCSTTEEEEEEETTTEEEEC
T ss_pred EECCCcHHHHHHHHHhhhcccCCCCHHHHHHHHHHHHHHHhc--CCCCcEEEEEEECCCcEEEC
Confidence 99999999999999999 9999999999999999999987 78999999999999889875
No 12
>1iru_G 20S proteasome; cell cycle, immune response, proteolysis, ubiquitin, hydrolase; 2.75A {Bos taurus} SCOP: d.153.1.4 PDB: 3unb_F* 3une_F 3unf_F* 3unh_F
Probab=100.00 E-value=2.3e-61 Score=401.11 Aligned_cols=221 Identities=30% Similarity=0.489 Sum_probs=211.7
Q ss_pred CCCCCCCcceeeCCCCcchhhhhHHHHhccCCcEEEEEeCCEEEEEEeecCCCCcccCCccceEEEecCcEEEEEecChh
Q 027541 2 GDSQYSFSLTTFSPSGKLVQIEHALTAVGSGQTSLGIKASNGVVIATEKKLPSILVDESSVHKIQSLTPNIGVVYSGMGP 81 (222)
Q Consensus 2 ~~~~~d~~~~~f~p~G~l~q~eya~~a~~~G~t~vgi~~~dgvvla~d~~~~~~l~~~~~~~KI~~i~~~i~~~~sG~~~ 81 (222)
+.++||+++|+|||||||+|||||.||+++|+|+|||+++||||||+|+|.++++...++.+||++|++||+|+++|..+
T Consensus 3 ~~~~yd~~~t~fsp~Grl~QvEyA~~av~~Gtt~vgi~~~dgVvlaaD~r~~~g~~~~~~~~KI~~i~~~i~~~~aG~~a 82 (254)
T 1iru_G 3 IGTGYDLSASTFSPDGRVFQVEYAMKAVENSSTAIGIRCKDGVVFGVEKLVLSKLYEEGSNKRLFNVDRHVGMAVAGLLA 82 (254)
T ss_dssp CCSSTTSCTTCCCTTSCCHHHHHHHHHHHTSCCEEEEECSSBEEEEEEEECSCTTBCTTTTCCEEEEETTEEEEEEECHH
T ss_pred cccccCCCCccCCcCCccHHHHhHHHHHhcCCCEEEEEECCEEEEEEecccCCCCcCcCcCCcEEEECCCEEEEEecChH
Confidence 36799999999999999999999999999999999999999999999999998766678999999999999999999999
Q ss_pred hHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHhhcCceeeeeEeEEEEEEe-CCCCeEEEECCCCceEeeee
Q 027541 82 DFRVLVRKSRKQAEQYHRLYKEPIPVTQLVRETAAVMQEFTQSGGVRPFGVSLLVAGYD-DKGPQLYQVDPSGSYFSWKA 160 (222)
Q Consensus 82 D~~~l~~~~~~~~~~~~~~~~~~i~~~~la~~l~~~~~~~~~~~~~rP~~~~~il~G~d-~~g~~L~~id~~G~~~~~~~ 160 (222)
|++.+.++++.+++.|+++++++++++.+++++++++|.+++++++|||+|++|||||| +.||+||.+||.|++.++++
T Consensus 83 D~~~l~~~~~~~~~~~~~~~~~~~~v~~la~~l~~~~~~~~~~~~~rP~~v~~lvaG~D~~~gp~Ly~idp~G~~~~~~~ 162 (254)
T 1iru_G 83 DARSLADIAREEASNFRSNFGYNIPLKHLADRVAMYVHAYTLYSAVRPFGCSFMLGSYSVNDGAQLYMIDPSGVSYGYWG 162 (254)
T ss_dssp HHHHHHHHHHHHHHHHHHHHSSCCCHHHHHHHHHHHHHHTTSBSSBCCCSEEEEEEEEETTTEEEEEEECTTCCEEEBSE
T ss_pred HHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHhccccccccceEEEEEEEEeCCCCcEEEEEcCCCCEEeeee
Confidence 99999999999999999999999999999999999999999998899999999999999 67899999999999999999
Q ss_pred EEecCCcHHHHHHHHHhccCCCCHHHHHHHHHHHHHhhhccCC-CCCcEEEEEEeeC--CceEEC
Q 027541 161 SAMGKNVSNAKTFLEKRYVEEMELDDAVHTAILTLKEGFEGQI-SEKNIEIGIIGEK--KEFRQY 222 (222)
Q Consensus 161 ~a~G~gs~~~~~~L~~~~~~~~~~~ea~~l~~~~L~~~~~~d~-~~~~iei~ii~~~--~~~~~~ 222 (222)
+|+|++++.++++|++.|+++|+++||++++++||+.+.+++. ++.+++|++|+++ |.|+++
T Consensus 163 ~aiGsgs~~a~~~Le~~~~~~ms~eea~~la~~al~~~~~~~~~~~~~iev~vi~~~~~g~~~~l 227 (254)
T 1iru_G 163 CAIGKARQAAKTEIEKLQMKEMTCRDIVKEVAKIIYIVHDEVKDKAFELELSWVGELTNGRHEIV 227 (254)
T ss_dssp EEESTTHHHHHHHHTTSCGGGCCHHHHHHHHHHHHHHHSCSSSSCCEEEEEEECBTTTTTCCEEC
T ss_pred EEecCccHHHHHHHHHhccCCCCHHHHHHHHHHHHHHHHhhccCCCCcEEEEEEEcCCCCCeEEC
Confidence 9999999999999999999999999999999999999988875 8889999999987 668864
No 13
>1iru_C 20S proteasome; cell cycle, immune response, proteolysis, ubiquitin, hydrolase; 2.75A {Bos taurus} SCOP: d.153.1.4 PDB: 3unb_B* 3une_B 3unf_B* 3unh_B
Probab=100.00 E-value=5e-61 Score=400.49 Aligned_cols=221 Identities=39% Similarity=0.618 Sum_probs=210.0
Q ss_pred CCCCCCCcceeeCCCCcchhhhhHHHHhccCCcEEEEEeCCEEEEEEeecCCCCcccC-CccceEEEecCcEEEEEecCh
Q 027541 2 GDSQYSFSLTTFSPSGKLVQIEHALTAVGSGQTSLGIKASNGVVIATEKKLPSILVDE-SSVHKIQSLTPNIGVVYSGMG 80 (222)
Q Consensus 2 ~~~~~d~~~~~f~p~G~l~q~eya~~a~~~G~t~vgi~~~dgvvla~d~~~~~~l~~~-~~~~KI~~i~~~i~~~~sG~~ 80 (222)
|.++||+++|+|||||||+|||||.+|+++|+|+|||+++||||||+|+|.++.+... ++.+||++|++|++|+++|..
T Consensus 1 m~~~yd~~~t~fsp~Grl~QvEYA~~av~~Gtt~vgi~~~dgVVlaaD~r~~~g~~~~~~~~~KI~~i~~~i~~~~aG~~ 80 (261)
T 1iru_C 1 MSRRYDSRTTIFSPEGRLYQVEYAMEAIGHAGTCLGILANDGVLLAAERRNIHKLLDEVFFSEKIYKLNEDMACSVAGIT 80 (261)
T ss_dssp -CTTTCCCTTCCCTTSCCHHHHHHHHHHTTSCCEEEEBCSSEEEEEECCCCCCTTBCCCSSCSSEEECSSSEEEEEEECH
T ss_pred CCCccCCCCccCCCCCeehHHHhHHHHHhcCCcEEEEEeCCEEEEEEecccCCcccccCCCCccEEEecCCEEEEEeEcH
Confidence 3459999999999999999999999999999999999999999999999999865544 459999999999999999999
Q ss_pred hhHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHhhcCceeeeeEeEEEEEEeC-CCCeEEEECCCCceEeee
Q 027541 81 PDFRVLVRKSRKQAEQYHRLYKEPIPVTQLVRETAAVMQEFTQSGGVRPFGVSLLVAGYDD-KGPQLYQVDPSGSYFSWK 159 (222)
Q Consensus 81 ~D~~~l~~~~~~~~~~~~~~~~~~i~~~~la~~l~~~~~~~~~~~~~rP~~~~~il~G~d~-~g~~L~~id~~G~~~~~~ 159 (222)
+|++.+.++++.+++.|+++++++++++.+++++++++|.++++.+.|||++++||||||+ .||+||.+||.|++.+++
T Consensus 81 aD~~~l~~~~~~~~~~~~~~~~~~~~v~~la~~l~~~~~~~~~~~~~rP~~v~~lvaG~D~~~gp~Ly~idp~G~~~~~~ 160 (261)
T 1iru_C 81 SDANVLTNELRLIAQRYLLQYQEPIPCEQLVTALCDIKQAYTQFGGKRPFGVSLLYIGWDKHYGFQLYQSDPSGNYGGWK 160 (261)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHSSCCCHHHHHHHHHHHHHHTTTBSSCCCCCEEEEEEEEETTTEEEEEEEETTTEEEECS
T ss_pred HHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHhccccCcCcceEEEEEEEEeCCCCcEEEEECCCceEEeee
Confidence 9999999999999999999999999999999999999999999988999999999999996 789999999999999999
Q ss_pred eEEecCCcHHHHHHHHHhccC-CCCHHHHHHHHHHHHHhhhccC-CCCCcEEEEEEeeCCc---eEEC
Q 027541 160 ASAMGKNVSNAKTFLEKRYVE-EMELDDAVHTAILTLKEGFEGQ-ISEKNIEIGIIGEKKE---FRQY 222 (222)
Q Consensus 160 ~~a~G~gs~~~~~~L~~~~~~-~~~~~ea~~l~~~~L~~~~~~d-~~~~~iei~ii~~~~~---~~~~ 222 (222)
++|+|+|++.++++|++.|++ +|+++||++++++||..+.++| .++.+++|++|+++|+ |++|
T Consensus 161 ~~aiGsgs~~a~~~Le~~~~~~~ms~eeA~~la~~al~~~~~~d~~sg~~i~v~vi~~~~~~~~~~~l 228 (261)
T 1iru_C 161 ATCIGNNSAAAVSMLKQDYKEGEMTLKSALALAIKVLNKTMDVSKLSAEKVEIATLTRENGKTVIRVL 228 (261)
T ss_dssp EEEESTTTTHHHHHHHHHCCTTCCCHHHHHHHHHHHHHHSSSCTTCCSTTCEEEEEECCSSSCEEEEC
T ss_pred eEEeCcccHHHHHHHHHhhccCCCCHHHHHHHHHHHHHHHHhccCCCCCcEEEEEEEcCCCeeeEEEC
Confidence 999999999999999999999 9999999999999999999998 5899999999999985 7775
No 14
>1iru_D 20S proteasome; cell cycle, immune response, proteolysis, ubiquitin, hydrolase; 2.75A {Bos taurus} SCOP: d.153.1.4 PDB: 3unf_C* 3une_C* 3unh_C 3unb_C*
Probab=100.00 E-value=2.6e-61 Score=399.55 Aligned_cols=215 Identities=36% Similarity=0.645 Sum_probs=209.1
Q ss_pred CCCcceeeCCCCcchhhhhHHHHhccCCcEEEEEeCCEEEEEEeecCCCCcccCCccceEEEecCcEEEEEecChhhHHH
Q 027541 6 YSFSLTTFSPSGKLVQIEHALTAVGSGQTSLGIKASNGVVIATEKKLPSILVDESSVHKIQSLTPNIGVVYSGMGPDFRV 85 (222)
Q Consensus 6 ~d~~~~~f~p~G~l~q~eya~~a~~~G~t~vgi~~~dgvvla~d~~~~~~l~~~~~~~KI~~i~~~i~~~~sG~~~D~~~ 85 (222)
||+++|+|||||||+|||||++|+++|+|+|||+++||||||+|+|.+++++.+++.+||++|++|++|+++|..+|++.
T Consensus 3 yd~~~t~fsp~Grl~QvEYA~~av~~Gtt~vgi~~~dgVvlaaD~r~~~~l~~~~~~~KI~~i~~~i~~~~aG~~aD~~~ 82 (248)
T 1iru_D 3 YDRAITVFSPDGHLFQVEYAQEAVKKGSTAVGVRGRDIVVLGVEKKSVAKLQDERTVRKICALDDNVCMAFAGLTADARI 82 (248)
T ss_dssp CCCCCSCCCTTSCCHHHHHHHHHHHTSCCEEEECCSSEEEEEECCCCCCSSSCGGGGCSEEESSSSCEEEEEECHHHHHH
T ss_pred ccCCCceECCCCcchHHHHHHHHHHcCCCEEEEEeCCEEEEEEeecccccCccCCCCCcEEEEcCCEEEEEeecHHHHHH
Confidence 99999999999999999999999999999999999999999999999988888889999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHhhcCceeeeeEeEEEEEEe-CCCCeEEEECCCCceEeeeeEEec
Q 027541 86 LVRKSRKQAEQYHRLYKEPIPVTQLVRETAAVMQEFTQSGGVRPFGVSLLVAGYD-DKGPQLYQVDPSGSYFSWKASAMG 164 (222)
Q Consensus 86 l~~~~~~~~~~~~~~~~~~i~~~~la~~l~~~~~~~~~~~~~rP~~~~~il~G~d-~~g~~L~~id~~G~~~~~~~~a~G 164 (222)
+.++++.+++.|+++++++++++.+++++++++|.|+++.+.|||++++|||||| ++||+||.+||.|++.+++++|+|
T Consensus 83 l~~~~~~~~~~~~~~~~~~~~v~~la~~l~~~~~~~~~~~~~rp~~v~~lvaG~D~~~gp~Ly~idp~G~~~~~~~~aiG 162 (248)
T 1iru_D 83 VINRARVECQSHRLTVEDPVTVEYITRYIASLKQRYTQSNGRRPFGISALIVGFDFDGTPRLYQTDPSGTYHAWKANAIG 162 (248)
T ss_dssp HHHHHHHHHHHHHHHSSSCCCHHHHHHHHHHHHHHTTSBTTBCCCCEEEEEEEECSSSCEEEEEECTTSCEEEBSEEEES
T ss_pred HHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHhccCCcccccEEEEEEEEeCCCCcEEEEEcCCCcEEEeeEEEEC
Confidence 9999999999999999999999999999999999999998899999999999999 678999999999999999999999
Q ss_pred CCcHHHHHHHHHhccCCC--CHHHHHHHHHHHHHhhhccCCCCCcEEEEEEeeCCceEEC
Q 027541 165 KNVSNAKTFLEKRYVEEM--ELDDAVHTAILTLKEGFEGQISEKNIEIGIIGEKKEFRQY 222 (222)
Q Consensus 165 ~gs~~~~~~L~~~~~~~~--~~~ea~~l~~~~L~~~~~~d~~~~~iei~ii~~~~~~~~~ 222 (222)
++++.++++|++.|+++| +++||++++++||+.+.+ .++.+++|++|+++|+|+++
T Consensus 163 ~gs~~a~~~Le~~~~~~m~~s~eea~~la~~al~~~~~--~sg~~i~v~vi~~~g~~~~l 220 (248)
T 1iru_D 163 RGAKSVREFLEKNYTDEAIETDDLTIKLVIKALLEVVQ--SGGKNIELAVMRRDQSLKIL 220 (248)
T ss_dssp TTHHHHHHHHTTTCCSSTTCSHHHHHHHHHHHHHTTSC--TTSTTCCEEEEESSSCEECC
T ss_pred CCcHHHHHHHHHhhcccccCCHHHHHHHHHHHHHHHHc--CCCCcEEEEEEECCCcEEEC
Confidence 999999999999999999 999999999999999887 58999999999999988874
No 15
>1ryp_B 20S proteasome; multicatalytic proteinase, protein degradation, antigen processing, hydrolase, protease; 1.90A {Saccharomyces cerevisiae} SCOP: d.153.1.4 PDB: 1fnt_B 1g0u_A* 1jd2_A* 1g65_A 1z7q_B 2f16_A* 2fak_A* 2fny_A* 2gpl_A* 2zcy_A* 3bdm_A* 3d29_A* 3dy3_A* 3dy4_A* 3e47_A* 3gpj_A* 3gpt_A* 3gpw_A* 3hye_A* 3mg0_A* ...
Probab=100.00 E-value=1.1e-60 Score=396.31 Aligned_cols=214 Identities=64% Similarity=0.965 Sum_probs=207.8
Q ss_pred CCCCCCcceeeCCCCcchhhhhHHHHhccCCcEEEEEeCCEEEEEEeecCCCCcccCCccceEEEecCcEEEEEecChhh
Q 027541 3 DSQYSFSLTTFSPSGKLVQIEHALTAVGSGQTSLGIKASNGVVIATEKKLPSILVDESSVHKIQSLTPNIGVVYSGMGPD 82 (222)
Q Consensus 3 ~~~~d~~~~~f~p~G~l~q~eya~~a~~~G~t~vgi~~~dgvvla~d~~~~~~l~~~~~~~KI~~i~~~i~~~~sG~~~D 82 (222)
.++||+++|+|||||||+|||||.+|+++|+|+|||+++||||||+|+|.+++++.+++.+||++|++|++|++||..+|
T Consensus 2 ~~~yd~~~t~fsp~Grl~QvEyA~~av~~Gtt~vgi~~~dgVvlaaD~r~~~~l~~~~~~~Ki~~i~~~i~~~~aG~~aD 81 (250)
T 1ryp_B 2 TDRYSFSLTTFSPSGKLGQIDYALTAVKQGVTSLGIKATNGVVIATEKKSSSPLAMSETLSKVSLLTPDIGAVYSGMGPD 81 (250)
T ss_dssp CCCCCSBSSCBCTTSCBHHHHHHHHHHHTSCCEEEEEETTEEEEEEECCCSCSSBCGGGCCSSEEEETTEEEEEEECHHH
T ss_pred CCcccCCceeECCCCccHHHHhHHHHHHcCCcEEEEEECCEEEEEEeccCCCccccCcccCceEEECCCEEEEeeeCHHH
Confidence 35999999999999999999999999999999999999999999999999888888899999999999999999999999
Q ss_pred HHHHHHHHHHHHHH-HHHHhCCCCCHHHHHHHHHHHHHHHhhcCceeeeeEeEEEEEEeC-CCCeEEEECCCCceEeeee
Q 027541 83 FRVLVRKSRKQAEQ-YHRLYKEPIPVTQLVRETAAVMQEFTQSGGVRPFGVSLLVAGYDD-KGPQLYQVDPSGSYFSWKA 160 (222)
Q Consensus 83 ~~~l~~~~~~~~~~-~~~~~~~~i~~~~la~~l~~~~~~~~~~~~~rP~~~~~il~G~d~-~g~~L~~id~~G~~~~~~~ 160 (222)
++.+.++++.+++. |+..++.+++++.+++.++++++.++++.++|||++++||||||+ +||+||.+||.|++.++++
T Consensus 82 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~a~~~~~~~~~~~~rp~~v~~lvaG~D~~~gp~Ly~idp~G~~~~~~~ 161 (250)
T 1ryp_B 82 YRVLVDKSRKVAHTSYKRIYGEYPPTKLLVSEVAKIMQEATQSGGVRPFGVSLLIAGHDEFNGFSLYQVDPSGSYFPWKA 161 (250)
T ss_dssp HHHHHHHHHHHHHHTTHHHHSSCCCHHHHHHHHHHHHHHTTTSBTBCCCCEEEEEEEEETTTEEEEEEECTTSCEEEBSE
T ss_pred HHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHhcCCcccceEEEEEEEEcCCCCcEEEEECCCCCEEeece
Confidence 99999999999999 999999999999999999999999999988999999999999997 6899999999999999999
Q ss_pred EEecCCcHHHHHHHHHhccCCCCHHHHHHHHHHHHHhhhccCCCCCcEEEEEEeeC
Q 027541 161 SAMGKNVSNAKTFLEKRYVEEMELDDAVHTAILTLKEGFEGQISEKNIEIGIIGEK 216 (222)
Q Consensus 161 ~a~G~gs~~~~~~L~~~~~~~~~~~ea~~l~~~~L~~~~~~d~~~~~iei~ii~~~ 216 (222)
+|+|+|++.++++||+.|+++|+++||++++++||+.+.++++++.+++|++|+++
T Consensus 162 ~aiGsgs~~a~~~Le~~~~~~ms~eea~~la~~al~~~~~~~~sg~~i~v~vi~~~ 217 (250)
T 1ryp_B 162 TAIGKGSVAAKTFLEKRWNDELELEDAIHIALLTLKESVEGEFNGDTIELAIIGDE 217 (250)
T ss_dssp EEESTTHHHHHHHHHHHCCTTCCHHHHHHHHHHHHHHHCCSCCSTTTEEEEEECSC
T ss_pred eEecCccHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHhccccCCCCEEEEEEEcc
Confidence 99999999999999999999999999999999999999998889999999999986
No 16
>3nzj_F Proteasome component C1; ubiquitin, protein degradation, N-terminal nucleophilic HYDR 19S regulatory particle; HET: TY5 TRO MES; 2.40A {Saccharomyces cerevisiae} PDB: 1z7q_G* 3nzw_F* 3nzx_F* 3un4_F* 3un8_F* 4b4t_G 4g4s_G* 3bdm_F* 1fnt_G* 2zcy_F*
Probab=100.00 E-value=6.8e-61 Score=403.47 Aligned_cols=213 Identities=38% Similarity=0.587 Sum_probs=207.3
Q ss_pred CCCCCCcceeeCCCCcchhhhhHHHHhccCCcEEEEEeCCEEEEEEeecCCCCcccCCccceEEEecCcEEEEEecChhh
Q 027541 3 DSQYSFSLTTFSPSGKLVQIEHALTAVGSGQTSLGIKASNGVVIATEKKLPSILVDESSVHKIQSLTPNIGVVYSGMGPD 82 (222)
Q Consensus 3 ~~~~d~~~~~f~p~G~l~q~eya~~a~~~G~t~vgi~~~dgvvla~d~~~~~~l~~~~~~~KI~~i~~~i~~~~sG~~~D 82 (222)
.++||+++|+|||||||+|||||.||+++|+|+|||+++||||||+|+|.++.++..++.+||++|++||+|+++|..+|
T Consensus 5 ~~~yd~~~t~fSP~Grl~QvEYA~kAv~~GtT~Vgik~kdGVVlAaD~r~t~gl~~~~~~~KI~~I~d~i~~~~aG~~aD 84 (288)
T 3nzj_F 5 GTGYDLSNSVFSPDGRNFQVEYAVKAVENGTTSIGIKCNDGVVFAVEKLITSKLLVPQKNVKIQVVDRHIGCVYSGLIPD 84 (288)
T ss_dssp CCCTTSSTTCCCTTSCCHHHHHHHHHHHTSCCEEEEEETTEEEEEEEEEECCTTBCTTCSCCCEEETTTEEEEEEECHHH
T ss_pred cCCccCCcccCCCCCchHHHHHHHHHHhcCCcEEEEEECCEEEEEEcCCcccCCccccccceEEEEcCCEEEEecCcHHH
Confidence 78999999999999999999999999999999999999999999999999987766678899999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHhhcCceeeeeEeEEEEEEeCCCCeEEEECCCCceEeeeeEE
Q 027541 83 FRVLVRKSRKQAEQYHRLYKEPIPVTQLVRETAAVMQEFTQSGGVRPFGVSLLVAGYDDKGPQLYQVDPSGSYFSWKASA 162 (222)
Q Consensus 83 ~~~l~~~~~~~~~~~~~~~~~~i~~~~la~~l~~~~~~~~~~~~~rP~~~~~il~G~d~~g~~L~~id~~G~~~~~~~~a 162 (222)
++.|.++++.+++.|+++++++++++.+|+++++++|.|++++++|||+|++||||||++||+||++||.|++.+++++|
T Consensus 85 ~~~l~~~lr~e~~~y~~~~~~~i~v~~lA~~l~~~l~~yt~~~~~rP~gv~~lvaG~D~~Gp~Ly~iDp~G~~~~~~~~a 164 (288)
T 3nzj_F 85 GRHLVNRGREEAASFKKLYKTPIPIPAFADRLGQYVQAHTLYNSVRPFGVSTIFGGVDKNGAHLYMLEPSGSYWGYKGAA 164 (288)
T ss_dssp HHHHHHHHHHHHHHHHHHHSSCCCHHHHHHHHHHHHHHTTSCTTBCCCCEEEEEEEEETTEEEEEEECTTSCEEEBSEEE
T ss_pred HHHHHHHHHHHHHHHHHHcCCcCCHHHHHHHHHHHHHHHHHhccCCCceEEEEEEEEeCCCCEEEEECCCCCEEEcCEEE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ecCCcHHHHHHHHHh---ccCCCCHHHHHHHHHHHHHhhhccC-CCCCcEEEEEEee
Q 027541 163 MGKNVSNAKTFLEKR---YVEEMELDDAVHTAILTLKEGFEGQ-ISEKNIEIGIIGE 215 (222)
Q Consensus 163 ~G~gs~~~~~~L~~~---~~~~~~~~ea~~l~~~~L~~~~~~d-~~~~~iei~ii~~ 215 (222)
+|++++.++++|++. |+++|+++||++++.+||..+.+++ .++.++||++|++
T Consensus 165 iGsgs~~a~~~Lek~~~~~~~~ms~eEAv~la~~al~~a~~~~~~~~~~iev~vIt~ 221 (288)
T 3nzj_F 165 TGKGRQSAKAELEKLVDHHPEGLSAREAVKQAAKIIYLAHEDNKEKDFELEISWCSL 221 (288)
T ss_dssp ESTTHHHHHHHHHHHHHHCTTCCCHHHHHHHHHHHHHHHGGGGTTSEEEEEEEEEET
T ss_pred EcCcHHHHHHHHHHhccccCCCCCHHHHHHHHHHHHHHHHhcccCCCCeEEEEEEEe
Confidence 999999999999999 9999999999999999999999987 4788999999999
No 17
>1ryp_G 20S proteasome; multicatalytic proteinase, protein degradation, antigen processing, hydrolase, protease; 1.90A {Saccharomyces cerevisiae} SCOP: d.153.1.4 PDB: 1jd2_F* 1g65_F 1vsy_G 2f16_F* 2fak_F* 2fny_F* 2gpl_F* 3d29_F* 3dy3_F* 3dy4_F* 3e47_F* 3gpj_F* 3gpt_F* 3gpw_F* 3hye_F* 3l5q_L 3mg0_F* 3mg4_F* 3okj_F* 3shj_F* ...
Probab=100.00 E-value=1.5e-60 Score=393.99 Aligned_cols=218 Identities=38% Similarity=0.574 Sum_probs=208.5
Q ss_pred CCCCCCcceeeCCCCcchhhhhHHHHhccCCcEEEEEeCCEEEEEEeecCCCCcccCCccceEEEecCcEEEEEecChhh
Q 027541 3 DSQYSFSLTTFSPSGKLVQIEHALTAVGSGQTSLGIKASNGVVIATEKKLPSILVDESSVHKIQSLTPNIGVVYSGMGPD 82 (222)
Q Consensus 3 ~~~~d~~~~~f~p~G~l~q~eya~~a~~~G~t~vgi~~~dgvvla~d~~~~~~l~~~~~~~KI~~i~~~i~~~~sG~~~D 82 (222)
.++||+++|+|||||||+|||||.+|+++|+|+|||+++||||||+|++.++.++..+..+||++|++|++|+++|..+|
T Consensus 1 ~~~yd~~~t~fsp~Grl~QvEya~~av~~Gtt~vgi~~~dgVvlaaD~r~~~g~~~~~~~~KI~~i~~~i~~~~aG~~aD 80 (244)
T 1ryp_G 1 GTGYDLSNSVFSPDGRNFQVEYAVKAVENGTTSIGIKCNDGVVFAVEKLITSKLLVPQKNVKIQVVDRHIGCVYSGLIPD 80 (244)
T ss_dssp CCCTTSSTTCCCTTSCCHHHHHHHHHHHTSCCEEEEEETTEEEEEEEEECCCTTBCTTTSCCCEEETTTEEEEEEECHHH
T ss_pred CCCccCCcccCCcCCchHHHHhHHHHHHCCCCEEEEEECCEEEEEEecccCCCCccccccCceEEecCCEEEEEcccHHH
Confidence 47999999999999999999999999999999999999999999999999987666666799999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHhhcCceeeeeEeEEEEEEeCCCCeEEEECCCCceEeeeeEE
Q 027541 83 FRVLVRKSRKQAEQYHRLYKEPIPVTQLVRETAAVMQEFTQSGGVRPFGVSLLVAGYDDKGPQLYQVDPSGSYFSWKASA 162 (222)
Q Consensus 83 ~~~l~~~~~~~~~~~~~~~~~~i~~~~la~~l~~~~~~~~~~~~~rP~~~~~il~G~d~~g~~L~~id~~G~~~~~~~~a 162 (222)
++.+.++++.+++.|+++++++++++.+++++++++|.|+++++.|||++++||||||++||+||.+||.|++.+++++|
T Consensus 81 ~~~l~~~~~~~~~~~~~~~~~~~~v~~la~~l~~~~~~~t~~~~~rp~~v~~lvaG~D~~gp~Ly~idp~G~~~~~~~~a 160 (244)
T 1ryp_G 81 GRHLVNRGREEAASFKKLYKTPIPIPAFADRLGQYVQAHTLYNSVRPFGVSTIFGGVDKNGAHLYMLEPSGSYWGYKGAA 160 (244)
T ss_dssp HHHHHHHHHHHHHHHHHHHSSCCCHHHHHHHHHHHHHHTTSCTTBCCCCEEEEEEEEETTEEEEEEECTTSCEEEBSEEE
T ss_pred HHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHhcccCccCceEEEEEEEEeCCcCEEEEECCCCCEEEeeEEE
Confidence 99999999999999999999999999999999999999999988999999999999999899999999999999999999
Q ss_pred ecCCcHHHHHHHHHh---ccCCCCHHHHHHHHHHHHHhhhccCC-CCCcEEEEEEee---CCceE
Q 027541 163 MGKNVSNAKTFLEKR---YVEEMELDDAVHTAILTLKEGFEGQI-SEKNIEIGIIGE---KKEFR 220 (222)
Q Consensus 163 ~G~gs~~~~~~L~~~---~~~~~~~~ea~~l~~~~L~~~~~~d~-~~~~iei~ii~~---~~~~~ 220 (222)
+|+|++.++++||+. |+++|+++||++++++||+.+.++|. ++.+++|++|++ +|.++
T Consensus 161 iG~gs~~a~~~Le~~~~~~~~~ms~eea~~la~~al~~~~~~d~~s~~~iev~vi~~~~~~g~~~ 225 (244)
T 1ryp_G 161 TGKGRQSAKAELEKLVDHHPEGLSAREAVKQAAKIIYLAHEDNKEKDFELEISWCSLSETNGLHK 225 (244)
T ss_dssp ESTTHHHHHHHHHHHHHHCTTCCCHHHHHHHHHHHHHHHGGGGTTSCEEEEEEEEETTTTTTSEE
T ss_pred ECCChHHHHHHHHHhHhhcCCCCCHHHHHHHHHHHHHHHHhccCCCCCeEEEEEEEecCCCCeee
Confidence 999999999999997 99999999999999999999999985 899999999998 56444
No 18
>1ryp_E 20S proteasome; multicatalytic proteinase, protein degradation, antigen processing, hydrolase, protease; 1.90A {Saccharomyces cerevisiae} SCOP: d.153.1.4 PDB: 1jd2_D* 1g65_D 2f16_D* 2fak_D* 2fny_D* 2gpl_D* 3d29_D* 3dy3_D* 3dy4_D* 3e47_D* 3gpj_D* 3gpt_D* 3gpw_D* 3hye_D* 3mg0_D* 3mg4_D* 3okj_D* 3shj_D* 3tdd_D* 2z5c_C ...
Probab=100.00 E-value=1.5e-60 Score=393.68 Aligned_cols=216 Identities=32% Similarity=0.579 Sum_probs=208.7
Q ss_pred CCcceeeCCCCcchhhhhHHHHhccCCcEEEEEeCCEEEEEEeecCCCCcccCCccceEEEecCcEEEEEecChhhHHHH
Q 027541 7 SFSLTTFSPSGKLVQIEHALTAVGSGQTSLGIKASNGVVIATEKKLPSILVDESSVHKIQSLTPNIGVVYSGMGPDFRVL 86 (222)
Q Consensus 7 d~~~~~f~p~G~l~q~eya~~a~~~G~t~vgi~~~dgvvla~d~~~~~~l~~~~~~~KI~~i~~~i~~~~sG~~~D~~~l 86 (222)
|+++|+|||||||+|||||.+|+++|+|+|||+++||||||+|+|.++.++.+++.+||++|++|++|+++|..+|++.+
T Consensus 1 d~~~t~fsp~Grl~QvEyA~~av~~Gtt~vgi~~~dgVvlaaD~r~~~g~~~~~~~~Ki~~i~~~i~~~~aG~~aD~~~l 80 (242)
T 1ryp_E 1 DRGVSTFSPEGRLFQVEYSLEAIKLGSTAIGIATKEGVVLGVEKRATSPLLESDSIEKIVEIDRHIGCAMSGLTADARSM 80 (242)
T ss_dssp CCCTTCBCTTSCBHHHHHHHHHHTTSCCEEEEECSSCEEEEEECCCSSTTBCGGGCCCEEEEETTEEEEEEESGGGHHHH
T ss_pred CCCCceECCCCcChHHHhHHHHHHcCCCEEEEEECCEEEEEEeecCCCcCccCccCCceEEEcCCEEEEEeecHHHHHHH
Confidence 78899999999999999999999999999999999999999999999876668899999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHhhcCc------eeeeeEeEEEEEEe-CCCCeEEEECCCCceEeee
Q 027541 87 VRKSRKQAEQYHRLYKEPIPVTQLVRETAAVMQEFTQSGG------VRPFGVSLLVAGYD-DKGPQLYQVDPSGSYFSWK 159 (222)
Q Consensus 87 ~~~~~~~~~~~~~~~~~~i~~~~la~~l~~~~~~~~~~~~------~rP~~~~~il~G~d-~~g~~L~~id~~G~~~~~~ 159 (222)
.++++.+++.|+++++++++++.+++.+++++|.++++.+ .|||++++|||||| ++||+||.+||.|++.+++
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~v~~la~~l~~~~~~~t~~~~~~~~l~~RP~~v~~lvaG~D~~~gp~Ly~idp~G~~~~~~ 160 (242)
T 1ryp_E 81 IEHARTAAVTHNLYYDEDINVESLTQSVCDLALRFGEGASGEERLMSRPFGVALLIAGHDADDGYQLFHAEPSGTFYRYN 160 (242)
T ss_dssp HHHHHHHHHHHHHHHSSCCCHHHHHHHHHTTTTCCBSSCTTSCCCBSSCCSEEEEEEEEETTTEEEEEEECTTSCEEEBS
T ss_pred HHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHhccccCcccccccCcceEEEEEEEEeCCCCCEEEEECCCCCEeccC
Confidence 9999999999999999999999999999999999999988 89999999999999 6789999999999999999
Q ss_pred eEEecCCcHHHHHHHHHhccCCCCHHHHHHHHHHHHHhhhccCCCCCcEEEEEEeeCCceEEC
Q 027541 160 ASAMGKNVSNAKTFLEKRYVEEMELDDAVHTAILTLKEGFEGQISEKNIEIGIIGEKKEFRQY 222 (222)
Q Consensus 160 ~~a~G~gs~~~~~~L~~~~~~~~~~~ea~~l~~~~L~~~~~~d~~~~~iei~ii~~~~~~~~~ 222 (222)
++|+|+|++.++++|++.|+++|+++||++++++||+.+.+++.++.+++|++|+++|+|+++
T Consensus 161 ~~aiGsgs~~a~~~Le~~~~~~ms~eea~~la~~al~~~~~~~~sg~~i~v~vi~~~~~~~~~ 223 (242)
T 1ryp_E 161 AKAIGSGSEGAQAELLNEWHSSLTLKEAELLVLKILKQVMEEKLDENNAQLSCITKQDGFKIY 223 (242)
T ss_dssp EEEESTTHHHHHHHHHHHCCTTCCHHHHHHHHHHHHHHHCSSCCCTTSEEEEEEETTTEEEEC
T ss_pred EEEECCCCHHHHHHHHHhhccCCCHHHHHHHHHHHHHHHhhccCCCCcEEEEEEECCCCeEEC
Confidence 999999999999999999999999999999999999999999778999999999999988875
No 19
>1q5q_A Proteasome alpha-type subunit 1; proteasome assembly, Pro-peptide, inter-subunit contacts, RH erythropolis, hydrolase; 2.60A {Rhodococcus erythropolis} SCOP: d.153.1.4 PDB: 2h6j_A 1q5r_A
Probab=100.00 E-value=2.7e-51 Score=341.15 Aligned_cols=203 Identities=22% Similarity=0.357 Sum_probs=185.6
Q ss_pred eeeCCCCcc-hhhhhHHHHhccCCcEEEEEeCCEEEEEEeecCCCCcccCCccceEEEecCcEEEEEecChhhHHHHHHH
Q 027541 11 TTFSPSGKL-VQIEHALTAVGSGQTSLGIKASNGVVIATEKKLPSILVDESSVHKIQSLTPNIGVVYSGMGPDFRVLVRK 89 (222)
Q Consensus 11 ~~f~p~G~l-~q~eya~~a~~~G~t~vgi~~~dgvvla~d~~~~~~l~~~~~~~KI~~i~~~i~~~~sG~~~D~~~l~~~ 89 (222)
.-|||||++ .|+|||.+|+++|+|+|||+++||||||+|+| +++.+||++|++||+|+++|..+|++.|.++
T Consensus 5 ~~~sPe~~~~~qvEYA~~av~~Gtt~vgi~~~dgVVlaaD~r-------s~~~~KI~~I~d~i~~~~aG~~aD~~~l~~~ 77 (259)
T 1q5q_A 5 YYASAEQIMRDRSELARKGIARGRSVVVLTFRDGVLFVAENP-------STALHKVSELYDRLGFAAVGKYNEFENLRRA 77 (259)
T ss_dssp ----CHHHHHHHHHHHHHHHHTSCCEEEEECSSEEEEEECCS-------CSSSCSEEEEETTEEEEEEECHHHHHHHHHH
T ss_pred cccCHHHHHHHHHHHHHHHHhcCCcEEEEEeCCEEEEEEecC-------CCCcCcEEEeCCCEEEEEccCHHHHHHHHHH
Confidence 368999999 49999999999999999999999999999998 3678999999999999999999999999999
Q ss_pred HHHHHHHHHHHhCC-CCCHHHHHHHHHH-HHHHHhhcCceeeeeEeEEEEEEe----CCCCeEEEECCCCceE-eeeeEE
Q 027541 90 SRKQAEQYHRLYKE-PIPVTQLVRETAA-VMQEFTQSGGVRPFGVSLLVAGYD----DKGPQLYQVDPSGSYF-SWKASA 162 (222)
Q Consensus 90 ~~~~~~~~~~~~~~-~i~~~~la~~l~~-~~~~~~~~~~~rP~~~~~il~G~d----~~g~~L~~id~~G~~~-~~~~~a 162 (222)
++.+++.+++.++. +++++.+++++++ +.|.|+. +.|||+|++|||||| +.||+||++||.|++. +++++|
T Consensus 78 ~~~~~~~~~~~~~~~~i~v~~la~~l~~~l~q~yt~--~~rP~~v~~lvaG~D~~~~~~gp~Ly~idp~G~~~~~~~~~a 155 (259)
T 1q5q_A 78 GIVHADMRGYSYDRRDVTGRSLANAYAQTLGTIFTE--QPKPYEVEICVAEVGRVGSPKAPQLYRITYDGSIVDEQHFVV 155 (259)
T ss_dssp HHHHHHHHHHHSCGGGCCHHHHHHHHHHHHHHHHHH--SSSCCCEEEEEEECCCSSCCCCCEEEEEETTSCEEEESSEEE
T ss_pred HHHHHHHHHHHcCCcCCCHHHHHHHHHHHHHHHhcc--CCCCceEEEEEEEEcccCCCCCCEEEEECCCCceeeCCCEEE
Confidence 99999999999884 9999999999999 6677773 589999999999999 6899999999999999 789999
Q ss_pred ecCCcHHHHHHHHHhccCCCCHHHHHHHHHHHHHhhh-----ccCCCCCcEEEEEEeeCC---ceEEC
Q 027541 163 MGKNVSNAKTFLEKRYVEEMELDDAVHTAILTLKEGF-----EGQISEKNIEIGIIGEKK---EFRQY 222 (222)
Q Consensus 163 ~G~gs~~~~~~L~~~~~~~~~~~ea~~l~~~~L~~~~-----~~d~~~~~iei~ii~~~~---~~~~~ 222 (222)
+|++++.++++|++.|+++|+++||++++++||+.+. ++|+++.+++|++|+++| +|+++
T Consensus 156 iG~gs~~a~~~Le~~~~~~ms~eea~~la~~al~~~~~~~~~~rd~sg~~iev~vi~~~~~~~~~~~l 223 (259)
T 1q5q_A 156 MGGTTEPIATAMRESYRADLDLEAAVGIAVNALRQGGAGEGEKRNVDVASLEVAVLDQSRPRRAFRRI 223 (259)
T ss_dssp ESSSHHHHHHHHHHHCCTTCCHHHHHHHHHHHHTTCC--------CCSSCSEEEEEETTSSSCCEEEC
T ss_pred ECCChHHHHHHHHhhccCCCCHHHHHHHHHHHHHHHhhcccccccCCCCcEEEEEEECCCCcCCeEEC
Confidence 9999999999999999999999999999999999999 888899999999999997 78875
No 20
>3mi0_A Proteasome subunit alpha; enzyme inhibitors, lactones, proteasome endopeptidase comple mycobacterium tuberculosis, hydrolase; HET: SA6; 2.20A {Mycobacterium tuberculosis} SCOP: d.153.1.4 PDB: 3h6f_A 3krd_A* 3h6i_A* 3mka_A 2fhh_A* 2fhg_A 3hfa_D 3hf9_A 3mfe_D
Probab=100.00 E-value=5.2e-50 Score=330.89 Aligned_cols=200 Identities=24% Similarity=0.376 Sum_probs=184.1
Q ss_pred CCCCcc-hhhhhHHHHhccCCcEEEEEeCCEEEEEEeecCCCCcccCCccceEEEecCcEEEEEecChhhHHHHHHHHHH
Q 027541 14 SPSGKL-VQIEHALTAVGSGQTSLGIKASNGVVIATEKKLPSILVDESSVHKIQSLTPNIGVVYSGMGPDFRVLVRKSRK 92 (222)
Q Consensus 14 ~p~G~l-~q~eya~~a~~~G~t~vgi~~~dgvvla~d~~~~~~l~~~~~~~KI~~i~~~i~~~~sG~~~D~~~l~~~~~~ 92 (222)
|||+-+ -++|||.||+++|+|+|||+++||||||+|+| +++.+|||+|++||+|+++|..+|++.|.+.++.
T Consensus 8 ~p~~~~~~r~EYA~~av~~GtT~vgi~~kdgVVlaadkr-------~~~~~KI~~I~d~i~~~~aG~~aD~~~l~~~~~~ 80 (248)
T 3mi0_A 8 SPEQAMRERSELARKGIARAKSVVALAYAGGVLFVAENP-------SRSLQKISELYDRVGFAAAGKFNEFDNLRRGGIQ 80 (248)
T ss_dssp CHHHHHHHHHHHHHHHHHTSCCEEEEEETTEEEEEEECC-------CSSSCSEEEEETTEEEEEEECHHHHHHHHHHHHH
T ss_pred CHHHhcccchHHHHHHHhCCCcEEEEEeCCEEEEEEeCC-------CCCCCCeEEECCCEEEEEccCHHHHHHHHHHHHH
Confidence 677777 48999999999999999999999999999998 3688999999999999999999999999999999
Q ss_pred HHHHHHHHhC-CCCCHHHHHHHHH-HHHHHHhhcCceeeeeEeEEEEEEeC----CCCeEEEECCCCceE-eeeeEEecC
Q 027541 93 QAEQYHRLYK-EPIPVTQLVRETA-AVMQEFTQSGGVRPFGVSLLVAGYDD----KGPQLYQVDPSGSYF-SWKASAMGK 165 (222)
Q Consensus 93 ~~~~~~~~~~-~~i~~~~la~~l~-~~~~~~~~~~~~rP~~~~~il~G~d~----~g~~L~~id~~G~~~-~~~~~a~G~ 165 (222)
+++.|++.++ .+++++.++++++ .+.|.|++ ++|||+|++||||||+ .||+||++||+|++. +++++|+|+
T Consensus 81 ~~~l~~~~~~~~~i~v~~la~~l~~~l~q~yt~--~~rP~gv~~liaG~D~~~~~~gp~Ly~~Dp~G~~~~e~~~~a~Gs 158 (248)
T 3mi0_A 81 FADTRGYAYDRRDVTGRQLANVYAQTLGTIFTE--QAKPYEVELCVAEVAHYGETKRPELYRITYDGSIADEPHFVVMGG 158 (248)
T ss_dssp HHHHHHHHSCGGGCCHHHHHHHHHHHHHHHHHH--SSSCCCEEEEEEECCCTTCCCCCEEEEECTTSCEEEESSEEEESS
T ss_pred HHHHHHHhcCCCCCCHHHHHHHHHHHHHHHhcc--CCCCceEEEEEEEEcCCCCCCCCEEEEECCCeEEeecccEEEECc
Confidence 9999999999 8999999999999 66788887 5899999999999998 789999999999999 499999999
Q ss_pred CcHHHHHHHHHhccCCCCHHHHHHHHHHHHHhhh-------ccCCCCCcEEEEEEeeCCc---eEEC
Q 027541 166 NVSNAKTFLEKRYVEEMELDDAVHTAILTLKEGF-------EGQISEKNIEIGIIGEKKE---FRQY 222 (222)
Q Consensus 166 gs~~~~~~L~~~~~~~~~~~ea~~l~~~~L~~~~-------~~d~~~~~iei~ii~~~~~---~~~~ 222 (222)
+++.++++||+.|+++|+++||++++++||+.+. ++++++.++||++|+++|+ |++|
T Consensus 159 gs~~a~~~Le~~y~~~mt~eeai~la~~aL~~~~~~~~~~~~~~~~~~~iev~vv~~~g~~~~f~~l 225 (248)
T 3mi0_A 159 TTEPIANALKESYAENASLTDALRIAVAALRAGSADTSGGDQPTLGVASLEVAVLDANRPRRAFRRI 225 (248)
T ss_dssp CHHHHHHHHHHHCCTTCCHHHHHHHHHHHHHHC------------CCTTEEEEEEETTSSSCCEEEC
T ss_pred cHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHHHHhhcccCcccccCCCcEEEEEEECCCCcccEEEC
Confidence 9999999999999999999999999999999999 6678999999999999974 8875
No 21
>1yar_H Proteasome beta subunit; proteasome 20S, PA26 proteasome activator 11S, hydrolase-HYD activator complex; 1.90A {Thermoplasma acidophilum} SCOP: d.153.1.4 PDB: 1ya7_H 1yau_H 3ipm_H 1pma_B 3jrm_H 3c92_H 3c91_H 3jse_H 3jtl_H
Probab=100.00 E-value=7.1e-47 Score=307.15 Aligned_cols=191 Identities=23% Similarity=0.399 Sum_probs=176.7
Q ss_pred HHhccCCcEEEEEeCCEEEEEEeecCCC-CcccCCccceEEEecCcEEEEEecChhhHHHHHHHHHHHHHHHHHHhCCCC
Q 027541 27 TAVGSGQTSLGIKASNGVVIATEKKLPS-ILVDESSVHKIQSLTPNIGVVYSGMGPDFRVLVRKSRKQAEQYHRLYKEPI 105 (222)
Q Consensus 27 ~a~~~G~t~vgi~~~dgvvla~d~~~~~-~l~~~~~~~KI~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~i 105 (222)
.++.+|+|+|||+++||||||+|+|.++ +++.+++.+||++|+++++++++|..+|++.+.++++.+++.|++++++++
T Consensus 3 ~~~~~Gtt~vgi~~~dgVvlaaD~r~~~g~l~~~~~~~Ki~~i~~~i~~~~aG~~aD~~~l~~~~~~~~~~~~~~~~~~~ 82 (217)
T 1yar_H 3 QTLETGTTTVGITLKDAVIMATERRVTMENFIMHKNGKKLFQIDTYTGMTIAGLVGDAQVLVRYMKAELELYRLQRRVNM 82 (217)
T ss_dssp ------CCEEEEEETTEEEEEECCCEEETTEEEESCCCCEEEEETTEEEEEEECHHHHHHHHHHHHHHHHHHHHHHSSCC
T ss_pred CCCCCCccEEEEEeCCEEEEEEcCCCCCCCEEecCccCCeEEeCCCEEEEeCcCHHHHHHHHHHHHHHHHHHHHHHCCCC
Confidence 4678999999999999999999999986 688889999999999999999999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHHHHhhcCceeeeeEeEEEEEEeCCCCeEEEECCCCceEeeeeEEecCCcHHHHHHHHHhccCCCCHH
Q 027541 106 PVTQLVRETAAVMQEFTQSGGVRPFGVSLLVAGYDDKGPQLYQVDPSGSYFSWKASAMGKNVSNAKTFLEKRYVEEMELD 185 (222)
Q Consensus 106 ~~~~la~~l~~~~~~~~~~~~~rP~~~~~il~G~d~~g~~L~~id~~G~~~~~~~~a~G~gs~~~~~~L~~~~~~~~~~~ 185 (222)
+++.+++++++.+|.++ .|||++++|+|||| +||+||.+||.|++.+++++|+|+|++.++++||+.|+++|++|
T Consensus 83 ~v~~la~~l~~~~~~~r----~rp~~v~~lvaG~D-~gp~Ly~idp~G~~~~~~~~aiGsgs~~a~~~Le~~~~~~~s~e 157 (217)
T 1yar_H 83 PIEAVATLLSNMLNQVK----YMPYMVQLLVGGID-TAPHVFSIDAAGGSVEDIYASTGSGSPFVYGVLESQYSEKMTVD 157 (217)
T ss_dssp CHHHHHHHHHHHHHHTT----TSCCCEEEEEEEES-SSEEEEEECTTCCEEEESEEEESTTHHHHHHHHHHHCCTTCCHH
T ss_pred CHHHHHHHHHHHHHhcC----CCCceEEEEEEEEC-CCCEEEEECCCCCeEecCEEEEcCCHHHHHHHHHhhcccCCCHH
Confidence 99999999999998753 78999999999999 89999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhhhccCC-CCCcEEEEEEeeCCceEEC
Q 027541 186 DAVHTAILTLKEGFEGQI-SEKNIEIGIIGEKKEFRQY 222 (222)
Q Consensus 186 ea~~l~~~~L~~~~~~d~-~~~~iei~ii~~~~~~~~~ 222 (222)
||++++++||+.+.++|. ++.+++|++|+++.+|+++
T Consensus 158 ea~~la~~al~~~~~rd~~s~~~i~v~vi~~~~g~~~~ 195 (217)
T 1yar_H 158 EGVDLVIRAISAAKQRDSASGGMIDVAVITRKDGYVQL 195 (217)
T ss_dssp HHHHHHHHHHHHHHHHCTTCCSCCEEEEEETTTEEEEC
T ss_pred HHHHHHHHHHHHHHhccCCCCCcEEEEEEECCCCEEEc
Confidence 999999999999999995 8999999999994458764
No 22
>3nzj_H Proteasome component PUP1; ubiquitin, protein degradation, N-terminal nucleophilic HYDR 19S regulatory particle; HET: TY5 TRO MES; 2.40A {Saccharomyces cerevisiae} PDB: 3nzw_H* 3nzx_H* 4b4t_2
Probab=100.00 E-value=5.5e-47 Score=315.00 Aligned_cols=192 Identities=20% Similarity=0.307 Sum_probs=176.6
Q ss_pred HHHHhccCCcEEEEEeCCEEEEEEeecCCC-CcccCCccceEEEecCcEEEEEecChhhHHHHHHHHHHHHHHHHHHhCC
Q 027541 25 ALTAVGSGQTSLGIKASNGVVIATEKKLPS-ILVDESSVHKIQSLTPNIGVVYSGMGPDFRVLVRKSRKQAEQYHRLYKE 103 (222)
Q Consensus 25 a~~a~~~G~t~vgi~~~dgvvla~d~~~~~-~l~~~~~~~KI~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~ 103 (222)
.+||+++|+|+|||+++||||||+|+|.++ .++.+++.+||++|+||++|+++|..+|++.+.++++.+++.|++++++
T Consensus 22 ~~kav~~GtTivgi~~kdGVVlAaD~r~t~g~li~~~~~~KI~~I~d~i~~~~aG~~aD~~~l~~~lr~~~~~~~~~~~~ 101 (261)
T 3nzj_H 22 QPKATSTGTTIVGVKFNNGVVIAADTRSTQGPIVADKNCAKLHRISPKIWCAGAGTAADTEAVTQLIGSNIELHSLYTSR 101 (261)
T ss_dssp --------CCEEEEEETTEEEEEEECCEEETTEEEETTCCCEEEEETTEEEEEEESHHHHHHHHHHHHHHHHHHHHHHTS
T ss_pred CCcccccCceEEEEEECCEEEEEEcCCcccCCeeccCCcceEEEEcCCEEEEeccCHHHHHHHHHHHHHHHHHhHHhhCC
Confidence 589999999999999999999999999987 6777889999999999999999999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHHHHhhcCceeeeeEeEEEEEEeCCCCeEEEECCCCceEeeeeEEecCCcHHHHHHHHHhccCCCC
Q 027541 104 PIPVTQLVRETAAVMQEFTQSGGVRPFGVSLLVAGYDDKGPQLYQVDPSGSYFSWKASAMGKNVSNAKTFLEKRYVEEME 183 (222)
Q Consensus 104 ~i~~~~la~~l~~~~~~~~~~~~~rP~~~~~il~G~d~~g~~L~~id~~G~~~~~~~~a~G~gs~~~~~~L~~~~~~~~~ 183 (222)
+++++.+++++++.++.+ .+||++++||||||++||+||.+||.|++.+++++|+|+|++.++++||+.|+++|+
T Consensus 102 ~~~v~~~a~~l~~~l~~~-----~~~~gv~llvaG~D~~Gp~Ly~iDp~G~~~~~~~~aiGsgs~~a~~~Le~~~~~~ms 176 (261)
T 3nzj_H 102 EPRVVSALQMLKQHLFKY-----QGHIGAYLIVAGVDPTGSHLFSIHAHGSTDVGYYLSLGSGSLAAMAVLESHWKQDLT 176 (261)
T ss_dssp CCCHHHHHHHHHHHHHHT-----TTCSCEEEEEEEEETTEEEEEEECTTSCEEECSEEEESTTHHHHHHHHHHHCCSSCC
T ss_pred CCCHHHHHHHHHHHHHHh-----cCcccEEEEEEEEeCCCCEEEEECCCccEEecCeEEeccchHHHHHHHHHHhccCCC
Confidence 999999999999988765 469999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhhhccCC-CCCcEEEEEEeeCCceEE
Q 027541 184 LDDAVHTAILTLKEGFEGQI-SEKNIEIGIIGEKKEFRQ 221 (222)
Q Consensus 184 ~~ea~~l~~~~L~~~~~~d~-~~~~iei~ii~~~~~~~~ 221 (222)
+|||++++.+||+.+.++|. ++.+++|++|+++|++++
T Consensus 177 ~eEA~~la~~al~~a~~rD~~sg~~iev~vI~kdg~~~~ 215 (261)
T 3nzj_H 177 KEEAIKLASDAIQAGIWNDLGSGSNVDVCVMEIGKDAEY 215 (261)
T ss_dssp HHHHHHHHHHHHHHHHHHCTTCCSCEEEEEEETTSCEEE
T ss_pred HHHHHHHHHHHHHHHHhhCCCCCCcEEEEEEECCCcEEE
Confidence 99999999999999999996 899999999999998765
No 23
>1j2q_H Proteasome beta subunit; ubiquitin, CP, hydrolase; HET: CIB; 2.83A {Archaeoglobus fulgidus} SCOP: d.153.1.4
Probab=100.00 E-value=3.6e-46 Score=299.79 Aligned_cols=185 Identities=26% Similarity=0.425 Sum_probs=177.0
Q ss_pred CcEEEEEeCCEEEEEEeecCCC-CcccCCccceEEEecCcEEEEEecChhhHHHHHHHHHHHHHHHHHHhCCCCCHHHHH
Q 027541 33 QTSLGIKASNGVVIATEKKLPS-ILVDESSVHKIQSLTPNIGVVYSGMGPDFRVLVRKSRKQAEQYHRLYKEPIPVTQLV 111 (222)
Q Consensus 33 ~t~vgi~~~dgvvla~d~~~~~-~l~~~~~~~KI~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~i~~~~la 111 (222)
+|+|||+++||||||+|+|.++ .++.+++.+||++|++|++++++|..+|++.+.++++.+++.|+++++++++++.++
T Consensus 1 tt~vgi~~~dgVvlaad~r~~~g~~~~~~~~~Ki~~i~~~i~~~~aG~~aD~~~l~~~~~~~~~~~~~~~~~~~~~~~~a 80 (202)
T 1j2q_H 1 TTTVGLVCKDGVVMATEKRATMGNFIASKAAKKIYQIADRMAMTTAGSVGDAQFLARIIKIEANLYEIRRERKPTVRAIA 80 (202)
T ss_dssp CCEEEEEETTEEEEEEECCEEETTEEEESSCCCEEEEETTEEEEEEECHHHHHHHHHHHHHHHHHHHHHHSSCCCHHHHH
T ss_pred CcEEEEEeCCEEEEEECCCcCcCCEEeeccccCEEEcCCCEEEEecccHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHH
Confidence 6899999999999999999986 688889999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhhcCceeeeeEeEEEEEEeCCCCeEEEECCCCceEeee-eEEecCCcHHHHHHHHHhccCCCCHHHHHHH
Q 027541 112 RETAAVMQEFTQSGGVRPFGVSLLVAGYDDKGPQLYQVDPSGSYFSWK-ASAMGKNVSNAKTFLEKRYVEEMELDDAVHT 190 (222)
Q Consensus 112 ~~l~~~~~~~~~~~~~rP~~~~~il~G~d~~g~~L~~id~~G~~~~~~-~~a~G~gs~~~~~~L~~~~~~~~~~~ea~~l 190 (222)
+++++.+|.++ .|||++++|+||||++||+||.+||.|++.+++ ++|+|+|++.++++||+.|+++|+++||+++
T Consensus 81 ~~l~~~~~~~r----~rp~~~~~lvaG~D~~gp~Ly~id~~G~~~~~~~~~aiG~g~~~a~~~Le~~~~~~~s~eea~~l 156 (202)
T 1j2q_H 81 TLTSNLLNSYR----YFPYLVQLLIGGIDSEGKSIYSIDPIGGAIEEKDIVATGSGSLTAYGVLEDRFTPEIGVDEAVEL 156 (202)
T ss_dssp HHHHHHHHHTT----TSCCCEEEEEEEEETTEEEEEEECTTCCEEEESSEEEESTTHHHHHHHHHHHCCTTCCHHHHHHH
T ss_pred HHHHHHHHhhC----CCCceEEEEEEEEeCCCCEEEEECCCCCeeecCCEEEEcCCHHHHHHHHHhhcCCCcCHHHHHHH
Confidence 99999998753 789999999999999899999999999999999 9999999999999999999999999999999
Q ss_pred HHHHHHhhhccCC-CCCcEEEEEEeeCCceEEC
Q 027541 191 AILTLKEGFEGQI-SEKNIEIGIIGEKKEFRQY 222 (222)
Q Consensus 191 ~~~~L~~~~~~d~-~~~~iei~ii~~~~~~~~~ 222 (222)
+++||+.+.++|. ++.+++|++|+++| |+++
T Consensus 157 a~~al~~~~~~d~~s~~~i~v~vi~~~g-~~~l 188 (202)
T 1j2q_H 157 AVRAIYSAMKRDSASGDGIDVVKITEDE-FYQY 188 (202)
T ss_dssp HHHHHHHHHTTCTTSCSCEEEEEECSSC-EEEC
T ss_pred HHHHHHHHHhcCCCCCCcEEEEEEeCCC-eEEe
Confidence 9999999999995 89999999999986 7764
No 24
>1ryp_H 20S proteasome; multicatalytic proteinase, protein degradation, antigen processing, hydrolase, protease; 1.90A {Saccharomyces cerevisiae} SCOP: d.153.1.4 PDB: 3nzj_N* 3nzw_N* 3nzx_N* 1vsy_H 3l5q_B 1g65_N* 1fnt_H 1g0u_N* 1jd2_N* 1z7q_H 2f16_N* 2fak_N* 2fny_N* 2gpl_N* 2zcy_N* 3bdm_N* 3d29_N* 3dy3_N* 3dy4_N* 3e47_N* ...
Probab=100.00 E-value=2.5e-46 Score=301.43 Aligned_cols=190 Identities=16% Similarity=0.239 Sum_probs=181.2
Q ss_pred HHHhccCCcEEEEEeCCEEEEEEeecCCCC-cccCCccceEEEecCcEEEEEecChhhHHHHHHHHHHHHHHHHHHhCCC
Q 027541 26 LTAVGSGQTSLGIKASNGVVIATEKKLPSI-LVDESSVHKIQSLTPNIGVVYSGMGPDFRVLVRKSRKQAEQYHRLYKEP 104 (222)
Q Consensus 26 ~~a~~~G~t~vgi~~~dgvvla~d~~~~~~-l~~~~~~~KI~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~ 104 (222)
++|+++|+|+|||+++||||||+|+|.++. ++.+++.+||++|++|++++++|..+|++.+.++++.+++.|++++++
T Consensus 3 ~~av~~Gtt~vgi~~~dgVvlaaD~r~~~g~~~~~~~~~Ki~~i~~~i~~~~aG~~aD~~~l~~~~~~~~~~~~~~~~~- 81 (205)
T 1ryp_H 3 KGEVSLGASIMAVTFKDGVILGADSRTTTGAYIANRVTDKLTRVHDKIWCCRSGSAADTQAIADIVQYHLELYTSQYGT- 81 (205)
T ss_dssp TTCCBCCCCEEEEEETTEEEEEECCCEEETTEEEESSCCCEEEEETTEEEEEEEBHHHHHHHHHHHHHHHHHHHHHHSS-
T ss_pred CCCCcCCceEEEEEeCCEEEEEEcCCcccCcEEEcCCcCceEEcCCCEEEEccCCHHHHHHHHHHHHHHHHHHHHHhCC-
Confidence 578999999999999999999999999875 788889999999999999999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHHHHhhcCceeeeeEeEEEEEEeC-CCCeEEEECCCCceEeeeeEEecCCcHHHHHHHHHhccCCCC
Q 027541 105 IPVTQLVRETAAVMQEFTQSGGVRPFGVSLLVAGYDD-KGPQLYQVDPSGSYFSWKASAMGKNVSNAKTFLEKRYVEEME 183 (222)
Q Consensus 105 i~~~~la~~l~~~~~~~~~~~~~rP~~~~~il~G~d~-~g~~L~~id~~G~~~~~~~~a~G~gs~~~~~~L~~~~~~~~~ 183 (222)
++++.+++++++.+|.+++. |++++|+||||+ .||+||.+||.|++.+++++|+|+|++.++++||+.|+++|+
T Consensus 82 ~~v~~la~~l~~~~~~~~~~-----~~~~~lvaG~D~~~gp~Ly~id~~G~~~~~~~~aiGsgs~~a~~~Le~~~~~~~s 156 (205)
T 1ryp_H 82 PSTETAASVFKELCYENKDN-----LTAGIIVAGYDDKNKGEVYTIPLGGSVHKLPYAIAGSGSTFIYGYCDKNFRENMS 156 (205)
T ss_dssp CCHHHHHHHHHHHHHHTTTT-----CCEEEEEEEEETTTEEEEEEECTTSCCEEESEEEESGGGGGGHHHHHHHCCTTCC
T ss_pred CCHHHHHHHHHHHHHhhhcC-----ceEEEEEEEEecCCCcEEEEECCCccEEecCEEEEEecHHHHHHHHHhccCCCCC
Confidence 99999999999999998753 999999999997 689999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhhhccCC-CCCcEEEEEEeeCCceEE
Q 027541 184 LDDAVHTAILTLKEGFEGQI-SEKNIEIGIIGEKKEFRQ 221 (222)
Q Consensus 184 ~~ea~~l~~~~L~~~~~~d~-~~~~iei~ii~~~~~~~~ 221 (222)
++||++++++||+.+.++|. ++.+++|++|+++|..++
T Consensus 157 ~eea~~l~~~al~~a~~~d~~sg~~i~v~vi~~~g~~~~ 195 (205)
T 1ryp_H 157 KEETVDFIKHSLSQAIKWDGSSGGVIRMVVLTAAGVERL 195 (205)
T ss_dssp HHHHHHHHHHHHHHHHHHBTTCCSCEEEEEEETTEEEEE
T ss_pred HHHHHHHHHHHHHHHHHhCCccCCeEEEEEEcCCCEEEE
Confidence 99999999999999999995 899999999999987654
No 25
>1iru_N 20S proteasome; cell cycle, immune response, proteolysis, ubiquitin, hydrolase; 2.75A {Bos taurus} SCOP: d.153.1.4 PDB: 3unb_M* 3une_M 3unf_M* 3unh_M
Probab=100.00 E-value=9.4e-47 Score=306.80 Aligned_cols=193 Identities=17% Similarity=0.140 Sum_probs=182.4
Q ss_pred HHHhccCCcEEEEEeCCEEEEEEeecCCC-CcccCCccceEEEecCcEEEEEecChhhHHHHHHHHHHHHHHHHH-HhCC
Q 027541 26 LTAVGSGQTSLGIKASNGVVIATEKKLPS-ILVDESSVHKIQSLTPNIGVVYSGMGPDFRVLVRKSRKQAEQYHR-LYKE 103 (222)
Q Consensus 26 ~~a~~~G~t~vgi~~~dgvvla~d~~~~~-~l~~~~~~~KI~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~-~~~~ 103 (222)
++|+.+|+|+|||+++||||||+|+|.++ .++.+++.+||++|++|++++++|..+|++.+.++++.+++.|++ ++++
T Consensus 2 ~~av~~Gtt~vgi~~~dgVvlaaD~r~~~g~~~~~~~~~Ki~~i~~~i~~~~aG~~aD~~~l~~~~~~~~~~~~~~~~~~ 81 (219)
T 1iru_N 2 QNPMVTGTSVLGVKFEGGVVIAADMLGSYGSLARFRNISRIMRVNNSTMLGASGDYADFQYLKQVLGQMVIDEELLGDGH 81 (219)
T ss_dssp CSCCSEECCCEEEEETTEEEEEEECCEEETTEEEECSCCCEEEETTTEEEEEEEEHHHHHHHHHHHHHHHHHHHHHCSSC
T ss_pred CCCccCCceEEEEEeCCEEEEEECCccccCcEEecCCCCceEEeCCCEEEEeccCHHHHHHHHHHHHHHHHHHHHHHcCC
Confidence 46789999999999999999999999986 788888999999999999999999999999999999999999998 8999
Q ss_pred CCCHHHHHHHHHHHHHHHhhcCceeeeeEeEEEEEEeCCCCeEEEECCCCceEeeeeEEecCCcHHHHHHHHHhccC--C
Q 027541 104 PIPVTQLVRETAAVMQEFTQSGGVRPFGVSLLVAGYDDKGPQLYQVDPSGSYFSWKASAMGKNVSNAKTFLEKRYVE--E 181 (222)
Q Consensus 104 ~i~~~~la~~l~~~~~~~~~~~~~rP~~~~~il~G~d~~g~~L~~id~~G~~~~~~~~a~G~gs~~~~~~L~~~~~~--~ 181 (222)
+++++.+++++++.++.+ +.++|||++++||||+|++||+||.+||.|++.+++++|+|+|++.++++||+.|++ +
T Consensus 82 ~~~v~~la~~l~~~ly~~--r~~~~P~~v~~lvaG~D~~gp~Ly~id~~G~~~~~~~~aiGsgs~~a~~~Le~~~~~~~~ 159 (219)
T 1iru_N 82 SYSPRAIHSWLTRAMYSR--RSKMNPLWNTMVIGGYADGESFLGYVDMLGVAYEAPSLATGYGAYLAQPLLREVLEKQPV 159 (219)
T ss_dssp CCCHHHHHHHHHHHHHHH--HHTTCCCCEEEEEEEEETTEEEEEEECSSCCEEECSEEECTTHHHHTHHHHHHHHTSCSC
T ss_pred CCCHHHHHHHHHHHHHHh--cccCCCceEEEEEEEEECCCCEEEEECCCCCeEECCeEEECccHHHHHHHHHhhcCCCCC
Confidence 999999999999999654 345899999999999999899999999999999999999999999999999999999 9
Q ss_pred CCHHHHHHHHHHHHHhhhccCC-CCCcEEEEEEeeCCceEE
Q 027541 182 MELDDAVHTAILTLKEGFEGQI-SEKNIEIGIIGEKKEFRQ 221 (222)
Q Consensus 182 ~~~~ea~~l~~~~L~~~~~~d~-~~~~iei~ii~~~~~~~~ 221 (222)
|+++||++++++||+.+.++|. ++.+++|++|+++| |++
T Consensus 160 mt~eea~~l~~~al~~~~~~d~~sg~~i~v~vi~~~g-~~~ 199 (219)
T 1iru_N 160 LSQTEARDLVERCMRVLYYRDARSYNRFQTATVTEKG-VEI 199 (219)
T ss_dssp CCHHHHHHHHHHHHHHHHHHBTTCCSCEEEEEEETTE-EEE
T ss_pred CCHHHHHHHHHHHHHHHHHhcCcCCCcEEEEEEcCCC-EEE
Confidence 9999999999999999999995 89999999999987 664
No 26
>3h4p_a Proteasome subunit beta; core particle, cytoplasm, hydrolase, protease, threonine protease; 4.10A {Methanocaldococcus jannaschii}
Probab=100.00 E-value=1.3e-46 Score=306.00 Aligned_cols=186 Identities=23% Similarity=0.379 Sum_probs=177.0
Q ss_pred CCcEEEEEeCCEEEEEEeecCCC-CcccCCccceEEEecCcEEEEEecChhhHHHHHHHHHHHHHHHHHHhCCCCCHHHH
Q 027541 32 GQTSLGIKASNGVVIATEKKLPS-ILVDESSVHKIQSLTPNIGVVYSGMGPDFRVLVRKSRKQAEQYHRLYKEPIPVTQL 110 (222)
Q Consensus 32 G~t~vgi~~~dgvvla~d~~~~~-~l~~~~~~~KI~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~i~~~~l 110 (222)
|+|+|||+++||||||+|+|.++ .++.+++.+||++|++||+|+++|..+|++.+.++++.+++.|+++++++++++.+
T Consensus 1 Gtt~vgi~~~dgVvlaaD~r~~~g~~i~~~~~~KI~~i~~~i~~~~aG~~aD~~~l~~~~~~~~~~~~~~~~~~~~v~~l 80 (219)
T 3h4p_a 1 MTTTVGLICDDAVILATDKRASLGNLVADKEAKKLYKIDDYIAMTIAGSVGDAQAIVRLLIAEAKLYKMRTGRNIPPLAC 80 (219)
T ss_dssp -CCEEEEEETTEEEEECCCCEEETTEEEETTCCCEEEEETTEEEECCSCHHHHHHHHHHHHHHHHHHHHHTSSCCCHHHH
T ss_pred CccEEEEEECCEEEEEEcCCcccCCEeeccccceeEEecCCEEEEeeEcHHHHHHHHHHHHHHHHHHHHHcCCCCCHHHH
Confidence 79999999999999999999987 57788999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhhcCceeeeeEeEEEEEEeC-CCCeEEEECCCCceEeee-eEEecCCcHHHHHHHHHhccCCCCHHHHH
Q 027541 111 VRETAAVMQEFTQSGGVRPFGVSLLVAGYDD-KGPQLYQVDPSGSYFSWK-ASAMGKNVSNAKTFLEKRYVEEMELDDAV 188 (222)
Q Consensus 111 a~~l~~~~~~~~~~~~~rP~~~~~il~G~d~-~g~~L~~id~~G~~~~~~-~~a~G~gs~~~~~~L~~~~~~~~~~~ea~ 188 (222)
++++++++|.++ .|||++++||||||+ +||+||.+||.|++.+++ +.|+|+|++.++++||+.|+++|+++||+
T Consensus 81 a~~l~~~~~~~~----~~P~~v~~lvaG~D~~~gp~Ly~idp~G~~~~~~~~~aiG~gs~~a~~~Le~~~~~~ms~eea~ 156 (219)
T 3h4p_a 81 ATLLSNILHSSR----MFPFLTQIIIGGYDLLEGAKLFSLDPLGGMNEEKTFTATGSGSPIAYGVLEAGYDRDMSVEEGI 156 (219)
T ss_dssp HHHHHHHHHHTT----TTTCCCCCEEEEEETTTEEEEEEECSSCCEEECSSEEEESTTHHHHHHHHHTSCCTTCCHHHHH
T ss_pred HHHHHHHHHHhc----CCCceEEEEEEEEeCCCCcEEEEECCCCceEecCCEEEEcCCHHHHHHHHHHhcCCCCCHHHHH
Confidence 999999998873 689999999999998 789999999999999999 99999999999999999999999999999
Q ss_pred HHHHHHHHhhhccCC-CCCcEEEEEEeeCCceEEC
Q 027541 189 HTAILTLKEGFEGQI-SEKNIEIGIIGEKKEFRQY 222 (222)
Q Consensus 189 ~l~~~~L~~~~~~d~-~~~~iei~ii~~~~~~~~~ 222 (222)
+++++||+.+.++|. ++.+++|++|+++| |++|
T Consensus 157 ~la~~al~~~~~rd~~sg~~i~v~vi~~~g-~~~l 190 (219)
T 3h4p_a 157 KLALNALKSAMERDTFSGNGISLAVITKDG-VKIF 190 (219)
T ss_dssp HHHHHHHHHHHTSCSSCCSCCCEEEEETTE-EEEC
T ss_pred HHHHHHHHHHHhhcCCCCCcEEEEEEeCCC-eEEc
Confidence 999999999999995 89999999999985 8764
No 27
>3nzj_K Proteasome component PRE2; ubiquitin, protein degradation, N-terminal nucleophilic HYDR 19S regulatory particle; HET: TY5 TRO MES; 2.40A {Saccharomyces cerevisiae} PDB: 3nzw_K* 3nzx_K* 4b4t_5
Probab=100.00 E-value=2.3e-46 Score=314.93 Aligned_cols=205 Identities=17% Similarity=0.258 Sum_probs=177.0
Q ss_pred eCCCCcchhh------hhHHHHhccCCcEEEEEeCCEEEEEEeecCCC-CcccCCccceEEEecCcEEEEEecChhhHHH
Q 027541 13 FSPSGKLVQI------EHALTAVGSGQTSLGIKASNGVVIATEKKLPS-ILVDESSVHKIQSLTPNIGVVYSGMGPDFRV 85 (222)
Q Consensus 13 f~p~G~l~q~------eya~~a~~~G~t~vgi~~~dgvvla~d~~~~~-~l~~~~~~~KI~~i~~~i~~~~sG~~~D~~~ 85 (222)
=+|+.-+.+. .++.+++.+|+|+|||+++||||||+|+|.++ .++.+++.+||++|++|++++++|..+|++.
T Consensus 50 ~~p~~~~~~~~~~~~~~~~~~~v~~GtT~vgik~~dGVVlAaD~r~t~G~li~~~~~~KI~~I~d~i~~~~aG~~AD~~~ 129 (287)
T 3nzj_K 50 ASPQQFLRAHTDDSRNPDCKIKIAHGTTTLAFRFQGGIIVAVDSRATAGNWVASQTVKKVIEINPFLLGTMAGGAADCQF 129 (287)
T ss_dssp --------------------------CCEEEEEETTEEEEEECCCEEETTEEEESCCCCEEEEETTEEEECEECHHHHHH
T ss_pred CCHHHHHHHhcccccccchhhheccCceEEEEEECCEEEEEEccccccCceeecCCcceEEEEcCcEEEEecCCHHHHHH
Confidence 3566666443 26788999999999999999999999999986 7888899999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHhhcCceeeeeEeEEEEEEe-CCCCeEEEECCCCceEeeeeEEec
Q 027541 86 LVRKSRKQAEQYHRLYKEPIPVTQLVRETAAVMQEFTQSGGVRPFGVSLLVAGYD-DKGPQLYQVDPSGSYFSWKASAMG 164 (222)
Q Consensus 86 l~~~~~~~~~~~~~~~~~~i~~~~la~~l~~~~~~~~~~~~~rP~~~~~il~G~d-~~g~~L~~id~~G~~~~~~~~a~G 164 (222)
+.++++.+++.|+++++++++++.+++++++++|.+++ +||++++|||||| +.||+||.+||.|++.+++++|+|
T Consensus 130 l~~~lr~~~~~y~~~~~~~isv~~la~~ls~~l~~~r~----~p~~v~~lvaG~D~~~gp~Ly~iDp~G~~~~~~~~AiG 205 (287)
T 3nzj_K 130 WETWLGSQCRLHELREKERISVAAASKILSNLVYQYKG----AGLSMGTMICGYTRKEGPTIYYVDSDGTRLKGDIFCVG 205 (287)
T ss_dssp HHHHHHHHHHHHHHHHSSCCCHHHHHHHHHHHHHHTTT----SCCCEEEEEEEEETTTEEEEEEEETTCCEEECSEEEES
T ss_pred HHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHhhcC----CCceEEEEEEEEcCCCCCEEEEECCCceEEEcCeEEEe
Confidence 99999999999999999999999999999999998875 4999999999999 578999999999999999999999
Q ss_pred CCcHHHHHHHHHhccCCCCHHHHHHHHHHHHHhhhccCC-CCCcEEEEEEeeCCceEEC
Q 027541 165 KNVSNAKTFLEKRYVEEMELDDAVHTAILTLKEGFEGQI-SEKNIEIGIIGEKKEFRQY 222 (222)
Q Consensus 165 ~gs~~~~~~L~~~~~~~~~~~ea~~l~~~~L~~~~~~d~-~~~~iei~ii~~~~~~~~~ 222 (222)
+|++.++++||+.|+++|+++||++++++||..+.+||. ++.+++|++|+++| |+++
T Consensus 206 sgs~~a~~~Le~~y~~dms~eEAi~la~~aL~~a~~rD~~sg~~i~V~vItkdg-~~~l 263 (287)
T 3nzj_K 206 SGQTFAYGVLDSNYKWDLSVEDALYLGKRSILAAAHRDAYSGGSVNLYHVTEDG-WIYH 263 (287)
T ss_dssp TTHHHHHHHHHTSCCTTCCHHHHHHHHHHHHHHHHHHBTTCCSEEEEEEEETTE-EEEE
T ss_pred cchHHHHHHHHHhhcCCCCHHHHHHHHHHHHHHHHhhCcCCCCceEEEEEeCCC-EEEe
Confidence 999999999999999999999999999999999999995 89999999999997 7653
No 28
>1ryp_N 20S proteasome; multicatalytic proteinase, protein degradation, antigen processing, hydrolase, protease; 1.90A {Saccharomyces cerevisiae} SCOP: d.153.1.4 PDB: 1fnt_N* 1jd2_M* 1g65_M 1vsy_N 1z7q_N 2f16_M* 2fak_M* 2fny_M* 2gpl_M* 3d29_M* 3dy3_M* 3dy4_M* 3e47_M* 3gpj_M* 3gpt_M* 3gpw_M* 3hye_M* 3l5q_R 3mg0_M* 3mg4_M* ...
Probab=100.00 E-value=2.1e-46 Score=307.41 Aligned_cols=194 Identities=19% Similarity=0.208 Sum_probs=182.2
Q ss_pred HHHhccCCcEEEEEeCCEEEEEEeecCCC-CcccCCccceEEEecCcEEEEEecChhhHHHHHHHHHHHHHHHHH-----
Q 027541 26 LTAVGSGQTSLGIKASNGVVIATEKKLPS-ILVDESSVHKIQSLTPNIGVVYSGMGPDFRVLVRKSRKQAEQYHR----- 99 (222)
Q Consensus 26 ~~a~~~G~t~vgi~~~dgvvla~d~~~~~-~l~~~~~~~KI~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~----- 99 (222)
++|+.+|+|+|||+++||||||+|+|.++ .++.+++.+||++|++|++|+++|..+|++.+.++++.+++.|++
T Consensus 2 ~~av~~Gtt~vgi~~~dgVvlaaD~r~~~g~~~~~~~~~KI~~i~~~i~~~~aG~~aD~~~l~~~~~~~~~~~~~~~~~~ 81 (233)
T 1ryp_N 2 QQPIVTGTSVISMKYDNGVIIAADNLGSYGSLLRFNGVERLIPVGDNTVVGISGDISDMQHIERLLKDLVTENAYDNPLA 81 (233)
T ss_dssp CCCCEEECCEEEEEETTEEEEEEECCEEETTEEEESCCCCEEEETTTEEEEEEEEHHHHHHHHHHHHHHHHHHHTTCTTT
T ss_pred cccccCCceEEEEEECCEEEEEEcCccccCCeeecCCcCceEEeCCCEEEEccccHHHHHHHHHHHHHHHHHHhhccchh
Confidence 46789999999999999999999999986 688888999999999999999999999999999999999999999
Q ss_pred HhCCCCCHHHHHHHHHHHHHHHhhcCceeeeeEeEEEEEEeCC-CCeEEEECCCCceEeeeeEEecCCcHHHHHHHHHhc
Q 027541 100 LYKEPIPVTQLVRETAAVMQEFTQSGGVRPFGVSLLVAGYDDK-GPQLYQVDPSGSYFSWKASAMGKNVSNAKTFLEKRY 178 (222)
Q Consensus 100 ~~~~~i~~~~la~~l~~~~~~~~~~~~~rP~~~~~il~G~d~~-g~~L~~id~~G~~~~~~~~a~G~gs~~~~~~L~~~~ 178 (222)
+++++++++.+++++++.++.+ +.++|||++++||||||++ ||+||.+||.|++.+++++|+|+|++.++++||+.|
T Consensus 82 ~~~~~~~v~~la~~l~~~ly~~--r~~~~P~~v~~lvaG~D~~~gp~Ly~id~~G~~~~~~~~aiGsgs~~a~~~Le~~~ 159 (233)
T 1ryp_N 82 DAEEALEPSYIFEYLATVMYQR--RSKMNPLWNAIIVAGVQSNGDQFLRYVNLLGVTYSSPTLATGFGAHMANPLLRKVV 159 (233)
T ss_dssp TTTTSCCHHHHHHHHHHHHHHH--HHTTCCCCEEEEEEEECTTSCEEEEEEETTCCEECCSEEECTHHHHHHHHHHTTTC
T ss_pred hcCCCCCHHHHHHHHHHHHHHh--cCCCCCceEEEEEEEEcCCCCEEEEEECCCcCeEEcCEEEECcCHHHHHHHHHHhh
Confidence 8999999999999999999654 4457999999999999985 899999999999999999999999999999999999
Q ss_pred cC-----CCCHHHHHHHHHHHHHhhhccCC-CCCcEEEEEEeeCCceEE
Q 027541 179 VE-----EMELDDAVHTAILTLKEGFEGQI-SEKNIEIGIIGEKKEFRQ 221 (222)
Q Consensus 179 ~~-----~~~~~ea~~l~~~~L~~~~~~d~-~~~~iei~ii~~~~~~~~ 221 (222)
++ +|+++||++++++||+.+.++|. ++.+++|++|++++.|++
T Consensus 160 ~~~~~~~~ms~eea~~la~~al~~~~~rd~~sg~~i~v~vi~~~~g~~~ 208 (233)
T 1ryp_N 160 DRESDIPKTTVQVAEEAIVNAMRVLYYRDARSSRNFSLAIIDKNTGLTF 208 (233)
T ss_dssp SSGGGGGGCCHHHHHHHHHHHHHHHHHHBTTCCSEEEEEEEETTTEEEE
T ss_pred ccccccCCCCHHHHHHHHHHHHHHHHHhcccCCCcEEEEEEECCCCeEE
Confidence 99 99999999999999999999995 899999999999845765
No 29
>1iru_H 20S proteasome; cell cycle, immune response, proteolysis, ubiquitin, hydrolase; 2.75A {Bos taurus} SCOP: d.153.1.4 PDB: 3unb_N* 3une_N
Probab=100.00 E-value=2.1e-45 Score=295.97 Aligned_cols=184 Identities=17% Similarity=0.225 Sum_probs=176.2
Q ss_pred CcEEEEEeCCEEEEEEeecCCCC-cccCCccceEEEecCcEEEEEecChhhHHHHHHHHHHHHHHHHHHhCCCCCHHHHH
Q 027541 33 QTSLGIKASNGVVIATEKKLPSI-LVDESSVHKIQSLTPNIGVVYSGMGPDFRVLVRKSRKQAEQYHRLYKEPIPVTQLV 111 (222)
Q Consensus 33 ~t~vgi~~~dgvvla~d~~~~~~-l~~~~~~~KI~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~i~~~~la 111 (222)
+|+|||+++||||||+|+|.+++ ++.+++.+||++|++|++++++|..+|++.+.++++.+++.|+++++++++++.++
T Consensus 1 tt~vgi~~~dgVvlaaD~r~~~g~~~~~~~~~Ki~~i~~~i~~~~aG~~aD~~~l~~~~~~~~~~~~~~~~~~~~v~~la 80 (205)
T 1iru_H 1 TTIMAVQFDGGVVLGADSRTTTGSYIANRVTDKLTPIHDRIFCCRSGSAADTQAVADAVTYQLGFHSIELNEPPLVHTAA 80 (205)
T ss_dssp CCEEEEEETTEEEEEECCCEEETTEEEESSCCCEEEEETTEEEEEEECHHHHHHHHHHHHHHHHHHHHHHTSCCCHHHHH
T ss_pred CcEEEEEeCCEEEEEEcCCcccCcEEecCCcCceEEcCCCEEEEcCccHHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHH
Confidence 68999999999999999999975 88888999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhhcCceeeeeEeEEEEEEeC-CCCeEEEECCCCceEeeeeEEecCCcHHHHHHHHHhccCCCCHHHHHHH
Q 027541 112 RETAAVMQEFTQSGGVRPFGVSLLVAGYDD-KGPQLYQVDPSGSYFSWKASAMGKNVSNAKTFLEKRYVEEMELDDAVHT 190 (222)
Q Consensus 112 ~~l~~~~~~~~~~~~~rP~~~~~il~G~d~-~g~~L~~id~~G~~~~~~~~a~G~gs~~~~~~L~~~~~~~~~~~ea~~l 190 (222)
+++++.+|.+++ ||++++|+||||+ +||+||.+||.|++.+++++++|+|++.++++||+.|+++|+++||+++
T Consensus 81 ~~l~~~~~~~~~-----p~~~~~lvaG~D~~~gp~ly~~d~~G~~~~~~~~a~Gsgs~~a~~~Le~~~~~~~s~eea~~l 155 (205)
T 1iru_H 81 SLFKEMCYRYRE-----DLMAGIIIAGWDPQEGGQVYSVPMGGMMVRQSFAIGGSGSSYIYGYVDATYREGMTKEECLQF 155 (205)
T ss_dssp HHHHHHHHHTTT-----TCCEEEEEEEEETTTEEEEEEECTTSCCEECSEEEESGGGGGGHHHHHHHCCTTCCHHHHHHH
T ss_pred HHHHHHHHhcCc-----CccEEEEEEEEeCCCCCEEEEECCCCcEEecCEEEECCCHHHHHHHHHHhcCCCCCHHHHHHH
Confidence 999999998874 9999999999998 7899999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhhhccC-CCCCcEEEEEEeeCCc-eEE
Q 027541 191 AILTLKEGFEGQ-ISEKNIEIGIIGEKKE-FRQ 221 (222)
Q Consensus 191 ~~~~L~~~~~~d-~~~~~iei~ii~~~~~-~~~ 221 (222)
+.+||+.+.++| .++.+++|++|+++|. |++
T Consensus 156 ~~~al~~~~~~d~~s~~~i~v~vi~~~g~~~~~ 188 (205)
T 1iru_H 156 TANALALAMERDGSSGGVIRLAAIAESGVERQV 188 (205)
T ss_dssp HHHHHHHHHHHBTTCCSCEEEEEEETTEEEEEE
T ss_pred HHHHHHHHHHhccccCCcEEEEEEeCCCeEEEE
Confidence 999999999998 5899999999999986 655
No 30
>2jay_A Proteasome; hydrolase; 1.99A {Mycobacterium tuberculosis} PDB: 3mka_C 3mi0_C* 2fhg_H* 2fhh_H 3krd_C* 3mfe_G 3hfa_H* 3h6i_C 3h6f_C 3hf9_H 3mfe_H
Probab=100.00 E-value=1.5e-45 Score=310.58 Aligned_cols=216 Identities=17% Similarity=0.188 Sum_probs=163.0
Q ss_pred CCCCCcceeeCCCCcc-----hh--hhhHHHHhccCCcEEEEEeCCEEEEEEeecCCC-CcccCCccceEEEecCcEEEE
Q 027541 4 SQYSFSLTTFSPSGKL-----VQ--IEHALTAVGSGQTSLGIKASNGVVIATEKKLPS-ILVDESSVHKIQSLTPNIGVV 75 (222)
Q Consensus 4 ~~~d~~~~~f~p~G~l-----~q--~eya~~a~~~G~t~vgi~~~dgvvla~d~~~~~-~l~~~~~~~KI~~i~~~i~~~ 75 (222)
+.|+..+...+||... +| +|||.+ +.+|+|+|||+++||||||+|+|.++ .++.+++.+||++|++|++|+
T Consensus 23 ~~f~~~~~~~~~~~l~~~~~~~~~~~~ya~~-v~~GtTiVgi~~kdGVVlAaD~r~t~g~li~~~~~~KI~~i~d~i~~~ 101 (291)
T 2jay_A 23 SSFTDFLRRQAPELLPASISGGAPLAGGDAQ-LPHGTTIVALKYPGGVVMAGDRRSTQGNMISGRDVRKVYITDDYTATG 101 (291)
T ss_dssp ------------------------------------CCEEEEEETTEEEEEECCC--------CCCCCCEEEEETTEEEE
T ss_pred ccHHHHhhhcChhhccccccccCcCcccccc-ccCCcEEEEEEECCEEEEEECCCccCCCeeecCCcccEEEeCCcEEEE
Confidence 4566666777776443 22 689999 99999999999999999999999997 477788999999999999999
Q ss_pred EecChhhHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHhhcCceeeeeEeEEEEEEeCC-C-----CeEEEE
Q 027541 76 YSGMGPDFRVLVRKSRKQAEQYHRLYKEPIPVTQLVRETAAVMQEFTQSGGVRPFGVSLLVAGYDDK-G-----PQLYQV 149 (222)
Q Consensus 76 ~sG~~~D~~~l~~~~~~~~~~~~~~~~~~i~~~~la~~l~~~~~~~~~~~~~rP~~~~~il~G~d~~-g-----~~L~~i 149 (222)
++|..+|++.+.++++.+++.|++.++.+++++.+++.+++++|.++. ..+|||+|++||||||+. + |+||++
T Consensus 102 ~aG~~aD~~~l~~~lr~~~~~y~~~~~~~i~v~~la~~la~~l~~~~~-~~~rpf~v~~lvaG~D~~g~~~~~~p~Ly~i 180 (291)
T 2jay_A 102 IAGTAAVAVEFARLYAVELEHYEKLEGVPLTFAGKINRLAIMVRGNLA-AAMQGLLALPLLAGYDIHASDPQSAGRIVSF 180 (291)
T ss_dssp EESCHHHHHHHHHHHHHHHHHHHHHHSSCCCHHHHHHHHHHHHHTCHH-HHHHTCCCEEEEEEECTTCSCSTTCEEEEEE
T ss_pred EcccHHHHHHHHHHHHHHHHHhhhhcCCCCCHHHHHHHHHHHHHHhhh-hhccccceeEEEEEEeCCCCcCCCCCEEEEE
Confidence 999999999999999999999999999999999999999999998875 357999999999999985 4 899999
Q ss_pred CCCCceE--eeeeEEecCCcHHHHHHHHHhccCCCCHHHHHHHHHHHHHhhhccCCCCCcE--------EEEEEeeCCce
Q 027541 150 DPSGSYF--SWKASAMGKNVSNAKTFLEKRYVEEMELDDAVHTAILTLKEGFEGQISEKNI--------EIGIIGEKKEF 219 (222)
Q Consensus 150 d~~G~~~--~~~~~a~G~gs~~~~~~L~~~~~~~~~~~ea~~l~~~~L~~~~~~d~~~~~i--------ei~ii~~~~~~ 219 (222)
||.|++. +++++|+|+|++.++++|++.|+++|+++||++++++||+.+.++|...+++ +|++|+++| |
T Consensus 181 Dp~G~~~e~~~~~~aiGsgs~~a~~~Le~~~~~~ms~eEAi~la~~aL~~a~~~D~~sg~~e~vr~~~~~v~vi~~dg-~ 259 (291)
T 2jay_A 181 DAAGGWNIEEEGYQAVGSGSLFAKSSMKKLYSQVTDGDSGLRVAVEALYDAADDDSATGGPDLVRGIFPTAVIIDADG-A 259 (291)
T ss_dssp CTTSCEEECSSSEEEESTTHHHHHHHHHHHGGGCCSHHHHHHHHHHHHHHC----------------CCEEEEEETTE-E
T ss_pred CCCCcEEecCCCEEEEecCHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHhhCCCCCCcccccccCCEEEEEECCC-e
Confidence 9999999 8899999999999999999999999999999999999999999999743344 699999986 7
Q ss_pred EEC
Q 027541 220 RQY 222 (222)
Q Consensus 220 ~~~ 222 (222)
+++
T Consensus 260 ~~l 262 (291)
T 2jay_A 260 VDV 262 (291)
T ss_dssp EEC
T ss_pred EEc
Confidence 764
No 31
>1iru_M 20S proteasome; cell cycle, immune response, proteolysis, ubiquitin, hydrolase; 2.75A {Bos taurus} SCOP: d.153.1.4 PDB: 3unb_L* 3une_L 3unf_L* 3unh_L
Probab=100.00 E-value=5.7e-45 Score=295.08 Aligned_cols=186 Identities=19% Similarity=0.267 Sum_probs=175.0
Q ss_pred hccCCcEEEEEeCCEEEEEEeecCCCC-cccCCccceEEEecCcEEEEEecChhhHHHHHHHHHHHHHHHHHHhCCCCCH
Q 027541 29 VGSGQTSLGIKASNGVVIATEKKLPSI-LVDESSVHKIQSLTPNIGVVYSGMGPDFRVLVRKSRKQAEQYHRLYKEPIPV 107 (222)
Q Consensus 29 ~~~G~t~vgi~~~dgvvla~d~~~~~~-l~~~~~~~KI~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~i~~ 107 (222)
+++|+|+|||+++||||||+|+|.++. ++.+++.+||++|++|++++++|..+|++.+.++++.+++.|++++++++++
T Consensus 6 v~~Gtt~vgi~~~dgVvlaaD~r~~~g~~~~~~~~~Ki~~i~~~i~~~~aG~~aD~~~l~~~~~~~~~~~~~~~~~~~~v 85 (213)
T 1iru_M 6 VFNGGTILAIAGEDFAIVASDTRLSEGFSIHTRDSPKCYKLTDKTVIGCSGFHGDCLTLTKIIEARLKMYKHSNNKAMTT 85 (213)
T ss_dssp CCCCCEEEEEEETTEEEEEEECCEEETTEEEESCCCCEEEEETTEEEEEEECHHHHHHHHHHHHHHHHHHHHHHSSCCCH
T ss_pred cCCCCcEEEEEeCCEEEEEECCCcccCCEEecCCCCcEEEcCCCEEEEccccHHHHHHHHHHHHHHHHHHHHhcCCCCCH
Confidence 579999999999999999999999975 4556799999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHhhcCceeeeeEeEEEEEEeCCC-CeEEEECCCCceEeeeeEEecCCcHHHHHHHHHh---------
Q 027541 108 TQLVRETAAVMQEFTQSGGVRPFGVSLLVAGYDDKG-PQLYQVDPSGSYFSWKASAMGKNVSNAKTFLEKR--------- 177 (222)
Q Consensus 108 ~~la~~l~~~~~~~~~~~~~rP~~~~~il~G~d~~g-~~L~~id~~G~~~~~~~~a~G~gs~~~~~~L~~~--------- 177 (222)
+.+++++++.++ +++ .|||++++||||||++| |+||.+||.|++.+++++|+|+|++.++++||+.
T Consensus 86 ~~la~~l~~~~y--~~r--~~P~~v~~lvaG~D~~g~p~Ly~id~~G~~~~~~~~aiGsg~~~a~~~Le~~~~~~~~~~~ 161 (213)
T 1iru_M 86 GAIAAMLSTILY--SRR--FFPYYVYNIIGGLDEEGKGAVYSFDPVGSYQRDSFKAGGSASAMLQPLLDNQVGFKNMQNV 161 (213)
T ss_dssp HHHHHHHHHHHH--HTT--TSCCCEEEEEEEECTTSCEEEEEECTTSCEEEESEEEEETTHHHHHHHHHHHTTCCSCSSC
T ss_pred HHHHHHHHHHHH--hhC--CCCceEEEEEEEEcCCCCEEEEEECCCCCEEECCEEEEeeCHHHHHHHHhhcccccccccc
Confidence 999999999994 443 79999999999999755 9999999999999999999999999999999999
Q ss_pred ccCCCCHHHHHHHHHHHHHhhhccCC-CCCcEEEEEEeeCCc
Q 027541 178 YVEEMELDDAVHTAILTLKEGFEGQI-SEKNIEIGIIGEKKE 218 (222)
Q Consensus 178 ~~~~~~~~ea~~l~~~~L~~~~~~d~-~~~~iei~ii~~~~~ 218 (222)
|+++|++|||++++++||+.+.++|. ++.+++|++|+++|.
T Consensus 162 ~~~~~s~eea~~l~~~al~~~~~~d~~s~~~i~v~vi~~~g~ 203 (213)
T 1iru_M 162 EHVPLSLDRAMRLVKDVFISAAERDVYTGDALRICIVTKEGI 203 (213)
T ss_dssp CCCCCCHHHHHHHHHHHHHHHHHHBTTSCSEEEEEEEETTEE
T ss_pred CCCCCCHHHHHHHHHHHHHHHHHhCCccCCcEEEEEEcCCCe
Confidence 88999999999999999999999995 899999999999874
No 32
>1ryp_I 20S proteasome; multicatalytic proteinase, protein degradation, antigen processing, hydrolase, protease; 1.90A {Saccharomyces cerevisiae} SCOP: d.153.1.4 PDB: 1g0u_H* 1jd2_H* 1g65_H 1vsy_I 1z7q_I 2f16_H* 2fak_H* 2fny_H* 2gpl_H* 3d29_H* 3dy3_H* 3dy4_H* 3e47_H* 3gpj_H* 3gpt_H* 3gpw_H* 3hye_H* 3l5q_M 3mg0_H* 3mg4_H* ...
Probab=100.00 E-value=4.7e-45 Score=297.38 Aligned_cols=184 Identities=20% Similarity=0.302 Sum_probs=175.0
Q ss_pred CcEEEEEeCCEEEEEEeecCCCC-cccCCccceEEEecCcEEEEEecChhhHHHHHHHHHHHHHHHHHHhCCCCCHHHHH
Q 027541 33 QTSLGIKASNGVVIATEKKLPSI-LVDESSVHKIQSLTPNIGVVYSGMGPDFRVLVRKSRKQAEQYHRLYKEPIPVTQLV 111 (222)
Q Consensus 33 ~t~vgi~~~dgvvla~d~~~~~~-l~~~~~~~KI~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~i~~~~la 111 (222)
+|+|||+++||||||+|+|.++. ++.+++.+||++|+||++|+++|..+|++.+.++++.+++.|+++++++++++.++
T Consensus 1 TT~vgi~~~dgVvlaaD~r~t~g~~~~~~~~~KI~~i~d~i~~~~aG~~aD~~~l~~~~~~~~~~~~~~~~~~~~v~~~a 80 (222)
T 1ryp_I 1 TTIVGVKFNNGVVIAADTRSTQGPIVADKNCAKLHRISPKIWCAGAGTAADTEAVTQLIGSNIELHSLYTSREPRVVSAL 80 (222)
T ss_dssp CCEEEEEETTEEEEEECCCEEETTEEEESSCCCEEEEETTEEEEEEECHHHHHHHHHHHHHHHHHHHHHHTSCCCHHHHH
T ss_pred CeEEEEEECCEEEEEEcCCcccCCeeecCCcccEEEecCCEEEEecccHHHHHHHHHHHHHHHHHHHHHcCCCCCHHHHH
Confidence 68999999999999999999874 46677999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhhcCceeeeeEeEEEEEEeCCCCeEEEECCCCceEeeeeEEecCCcHHHHHHHHHhccCCCCHHHHHHHH
Q 027541 112 RETAAVMQEFTQSGGVRPFGVSLLVAGYDDKGPQLYQVDPSGSYFSWKASAMGKNVSNAKTFLEKRYVEEMELDDAVHTA 191 (222)
Q Consensus 112 ~~l~~~~~~~~~~~~~rP~~~~~il~G~d~~g~~L~~id~~G~~~~~~~~a~G~gs~~~~~~L~~~~~~~~~~~ea~~l~ 191 (222)
+++++.++.+ .|||++++|+||+|++||+||.+||.|++.+++++|+|+|++.++++||+.|+++|+++||++++
T Consensus 81 ~~l~~~l~~~-----~~p~~v~~lvaG~D~~gp~Ly~idp~G~~~~~~~~aiGsgs~~a~~~Le~~~~~~ms~eeA~~la 155 (222)
T 1ryp_I 81 QMLKQHLFKY-----QGHIGAYLIVAGVDPTGSHLFSIHAHGSTDVGYYLSLGSGSLAAMAVLESHWKQDLTKEEAIKLA 155 (222)
T ss_dssp HHHHHHHHHT-----TTCSCEEEEEEEEETTEEEEEEECTTSCEEECSEEEESTTHHHHHHHHHHHCCSSCCHHHHHHHH
T ss_pred HHHHHHHhhc-----CCCCCeeEEEEEEeCCCCEEEEECCCCCEEecCEEEECCCHHHHHHHHHhhCCCCcCHHHHHHHH
Confidence 9999998766 47999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhhhccCC-CCCcEEEEEEeeCCceEE
Q 027541 192 ILTLKEGFEGQI-SEKNIEIGIIGEKKEFRQ 221 (222)
Q Consensus 192 ~~~L~~~~~~d~-~~~~iei~ii~~~~~~~~ 221 (222)
++||+.+.++|. ++.+++|++|+++|++++
T Consensus 156 ~~al~~~~~~d~~sg~~i~v~vi~~~g~~~~ 186 (222)
T 1ryp_I 156 SDAIQAGIWNDLGSGSNVDVCVMEIGKDAEY 186 (222)
T ss_dssp HHHHHHHHHHCTTCCSCEEEEEEETTSCEEE
T ss_pred HHHHHHHHhccccCCCcEEEEEEECCCCEEE
Confidence 999999999996 899999999999996664
No 33
>1iru_L 20S proteasome; cell cycle, immune response, proteolysis, ubiquitin, hydrolase; 2.75A {Bos taurus} SCOP: d.153.1.4 PDB: 3unb_K* 3une_K 3unf_K* 3unh_K
Probab=100.00 E-value=2.7e-45 Score=295.12 Aligned_cols=184 Identities=20% Similarity=0.329 Sum_probs=176.0
Q ss_pred CcEEEEEeCCEEEEEEeecCCC-CcccCCccceEEEecCcEEEEEecChhhHHHHHHHHHHHHHHHHHHhCCCCCHHHHH
Q 027541 33 QTSLGIKASNGVVIATEKKLPS-ILVDESSVHKIQSLTPNIGVVYSGMGPDFRVLVRKSRKQAEQYHRLYKEPIPVTQLV 111 (222)
Q Consensus 33 ~t~vgi~~~dgvvla~d~~~~~-~l~~~~~~~KI~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~i~~~~la 111 (222)
+|+|||+++||||||+|+|.++ .++.+++.+||++|++|++++++|..+|++.+.++++.+++.|+++++++++++.++
T Consensus 1 tt~vgi~~~dgVvlaaD~r~~~g~~~~~~~~~Ki~~i~~~i~~~~aG~~aD~~~l~~~~~~~~~~~~~~~~~~~~v~~la 80 (204)
T 1iru_L 1 TTTLAFKFRHGVIVAADSRATAGAYIASQTVKKVIEINPYLLGTMAGGAADCSFWERLLARQCRIYELRNKERISVAAAS 80 (204)
T ss_dssp CCEEEEEETTEEEEEECCCEEETTEEEESCCCCEEEEETTEEEECCBCHHHHHHHHHHHHHHHHHHHHHHSSCCCHHHHH
T ss_pred CeEEEEEeCCEEEEEEcCCcccCCEEEcCcccceEEcCCCEEEEccCcHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHH
Confidence 6899999999999999999987 688888999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhhcCceeeeeEeEEEEEEeCCCCeEEEECCCCceEeeeeEEecCCcHHHHHHHHHhccCCCCHHHHHHHH
Q 027541 112 RETAAVMQEFTQSGGVRPFGVSLLVAGYDDKGPQLYQVDPSGSYFSWKASAMGKNVSNAKTFLEKRYVEEMELDDAVHTA 191 (222)
Q Consensus 112 ~~l~~~~~~~~~~~~~rP~~~~~il~G~d~~g~~L~~id~~G~~~~~~~~a~G~gs~~~~~~L~~~~~~~~~~~ea~~l~ 191 (222)
+++++.+|.+++ +||++++|+||||++||+||.+||.|++.+++++|+|+|++.++++||+.|+++|+++||++++
T Consensus 81 ~~l~~~~~~~r~----~~~~v~~lvaG~D~~gp~Ly~idp~G~~~~~~~~aiG~gs~~a~~~Le~~~~~~~s~eea~~l~ 156 (204)
T 1iru_L 81 KLLANMVYQYKG----MGLSMGTMICGWDKRGPGLYYVDSEGNRISGATFSVGSGSVYAYGVMDRGYSYDLEVEQAYDLA 156 (204)
T ss_dssp HHHHHHHHTTTT----SCCCBEEEEEEECSSSEEEEEEESSSCEEECSEEEESTTHHHHHHHHHTTCCTTCCHHHHHHHH
T ss_pred HHHHHHHHHhCC----CCeeEEEEEEEEeCCCCEEEEECCCCcEEEeCCEEEEcCHHHHHHHHhccCCCCCCHHHHHHHH
Confidence 999999998863 5899999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhhhccCC-CCCcEEEEEEeeCCceEE
Q 027541 192 ILTLKEGFEGQI-SEKNIEIGIIGEKKEFRQ 221 (222)
Q Consensus 192 ~~~L~~~~~~d~-~~~~iei~ii~~~~~~~~ 221 (222)
++||+.+.++|. ++.+++|++|+++| |++
T Consensus 157 ~~al~~~~~rd~~s~~~i~v~vi~~~g-~~~ 186 (204)
T 1iru_L 157 RRAIYQATYRDAYSGGAVNLYHVREDG-WIR 186 (204)
T ss_dssp HHHHHHHHHHBTTCCSEEEEEEECSSC-EEE
T ss_pred HHHHHHHHHhCccCCCceEEEEEeCCc-eEE
Confidence 999999999995 99999999999986 665
No 34
>3unf_H Proteasome subunit beta type-10; antigen presentation, drug development, protein degradation, hydrolase-hydrolase inhibitor complex; HET: 04C; 2.90A {Mus musculus} PDB: 3unh_H
Probab=100.00 E-value=4.8e-45 Score=299.14 Aligned_cols=183 Identities=25% Similarity=0.374 Sum_probs=173.9
Q ss_pred CcEEEEEeCCEEEEEEeecCCCC-cccCCccceEEEecCcEEEEEecChhhHHHHHHHHHHHHHHHHHHhCCCCCHHHHH
Q 027541 33 QTSLGIKASNGVVIATEKKLPSI-LVDESSVHKIQSLTPNIGVVYSGMGPDFRVLVRKSRKQAEQYHRLYKEPIPVTQLV 111 (222)
Q Consensus 33 ~t~vgi~~~dgvvla~d~~~~~~-l~~~~~~~KI~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~i~~~~la 111 (222)
||+|||+++||||||+|+|.++. ++.+++.+||++|++|++|+++|..+|++.+.++++.+++.|+++++++++++.++
T Consensus 1 TT~vgi~~kdgVVlaaD~r~t~g~~v~~~~~~KI~~i~~~i~~~~aG~~aD~~~l~~~~~~~~~~~~~~~~~~~~v~~la 80 (234)
T 3unf_H 1 TTIAGLVFRDGVILGADTRATNDSVVADKSCEKIHFIAPKIYCCGAGVAADTEMTTRMAASKMELHALSTGREPRVATVT 80 (234)
T ss_dssp CEEEEEECSSEEEEEECCCEEETTEEEESSCCCEEEEETTEEEEEEESHHHHHHHHHHHHHHHHHHHHHHCSCCCHHHHH
T ss_pred CeEEEEEeCCEEEEEECCCcccCCEeccCccccEEEecCCEEEEecccHHHHHHHHHHHHHHHHhhHHhcCCCCCHHHHH
Confidence 68999999999999999999875 45568999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhhcCceeeeeEeEEEEEEeCCCCeEEEECCCCceEeeeeEEecCCcHHHHHHHHHhccCCCCHHHHHHHH
Q 027541 112 RETAAVMQEFTQSGGVRPFGVSLLVAGYDDKGPQLYQVDPSGSYFSWKASAMGKNVSNAKTFLEKRYVEEMELDDAVHTA 191 (222)
Q Consensus 112 ~~l~~~~~~~~~~~~~rP~~~~~il~G~d~~g~~L~~id~~G~~~~~~~~a~G~gs~~~~~~L~~~~~~~~~~~ea~~l~ 191 (222)
+++++.++.+ .+||++++||||||++||+||.+||.|++.+++++|+|+|++.++++||+.|+++|++|||++++
T Consensus 81 ~~l~~~l~~~-----~~p~~v~llvaG~D~~gp~Ly~idp~G~~~~~~~~aiGsgs~~a~~~Le~~~~~~ms~eeA~~la 155 (234)
T 3unf_H 81 RILRQTLFRY-----QGHVGASLVVGGVDLNGPQLYEVHPHGSYSRLPFTALGSGQGAAVALLEDRFQPNMTLEAAQELL 155 (234)
T ss_dssp HHHHHHHHHT-----TTCSCEEEEEEEEETTEEEEEEECTTSCEEECSEEEEETTHHHHHHHHHHHCCSSCCHHHHHHHH
T ss_pred HHHHHHHHhc-----CCCccEEEEEEEEeCCCCEEEEECCCCCEEeccEEEEcCCchhhHHHHHhccCCCCCHHHHHHHH
Confidence 9999999865 36999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhhhccCC-CCCcEEEEEEeeCCceEE
Q 027541 192 ILTLKEGFEGQI-SEKNIEIGIIGEKKEFRQ 221 (222)
Q Consensus 192 ~~~L~~~~~~d~-~~~~iei~ii~~~~~~~~ 221 (222)
++||+.+.++|. ++.+++|++|+++| |++
T Consensus 156 ~~al~~~~~~D~~sg~~iev~vi~~dg-~~~ 185 (234)
T 3unf_H 156 VEAITAGILSDLGSGGNVDACVITAGG-AKL 185 (234)
T ss_dssp HHHHHHHHHHBTTCCSCEEEEEEESSC-EEE
T ss_pred HHHHHHHHhhcCCCCCcEEEEEEECCC-EEE
Confidence 999999999996 99999999999996 554
No 35
>1ryp_K 20S proteasome; multicatalytic proteinase, protein degradation, antigen processing, hydrolase, protease; 1.90A {Saccharomyces cerevisiae} SCOP: d.153.1.4 PDB: 1fnt_K 1g0u_J* 1jd2_J* 1g65_J 1vsy_K 1z7q_K 2f16_J* 2fak_J* 2fny_J* 2gpl_J* 2zcy_J* 3bdm_J* 3d29_J* 3dy3_J* 3dy4_J* 3e47_J* 3gpj_J* 3gpt_J* 3gpw_J* 3hye_J* ...
Probab=100.00 E-value=5.3e-45 Score=292.10 Aligned_cols=187 Identities=21% Similarity=0.302 Sum_probs=175.1
Q ss_pred CCcEEEEEeCCEEEEEEeecCCCC-cccCCccceEEEecCcEEEEEecChhhHHHHHHHHHHHHHHHHHHhCCCCCHHHH
Q 027541 32 GQTSLGIKASNGVVIATEKKLPSI-LVDESSVHKIQSLTPNIGVVYSGMGPDFRVLVRKSRKQAEQYHRLYKEPIPVTQL 110 (222)
Q Consensus 32 G~t~vgi~~~dgvvla~d~~~~~~-l~~~~~~~KI~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~i~~~~l 110 (222)
.+|+|||+++||||||+|+|.+++ ++.+++.+||++|++|++++++|..+|++.+.++++.+++.|+++++++++++.+
T Consensus 1 Mtt~vgi~~~dgVvlaaD~r~~~g~~~~~~~~~Ki~~i~~~i~~~~aG~~aD~~~l~~~~~~~~~~~~~~~~~~~~v~~l 80 (198)
T 1ryp_K 1 MDIILGIRVQDSVILASSKAVTRGISVLKDSDDKTRQLSPHTLMSFAGEAGDTVQFAEYIQANIQLYSIREDYELSPQAV 80 (198)
T ss_dssp CCCEEEEECSSCEEEEEECCEEETTEEEESCCCCEEEEETTEEEEEEESHHHHHHHHHHHHHHHHHHHHHHTSCCCHHHH
T ss_pred CceEEEEEECCEEEEEECCCcccCCEEEecCCCceEEeCCCEEEEeccCHHHHHHHHHHHHHHHHHHHHhcCCCCCHHHH
Confidence 379999999999999999999865 4556799999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhhcCceeeeeEeEEEEEEeC--CCCeEEEECCCCceEeeeeEEecCCcHHHHHHHHHhccCCCCHHHHH
Q 027541 111 VRETAAVMQEFTQSGGVRPFGVSLLVAGYDD--KGPQLYQVDPSGSYFSWKASAMGKNVSNAKTFLEKRYVEEMELDDAV 188 (222)
Q Consensus 111 a~~l~~~~~~~~~~~~~rP~~~~~il~G~d~--~g~~L~~id~~G~~~~~~~~a~G~gs~~~~~~L~~~~~~~~~~~ea~ 188 (222)
++++++.++.+++. .+||++++|+||||+ +||+||.+||.|++.+++++|+|+|++.++++||+.|+++|+++||+
T Consensus 81 a~~l~~~l~~~~~~--r~p~~v~~lvaG~D~~~~~p~Ly~idp~G~~~~~~~~aiG~g~~~a~~~Le~~~~~~~s~eea~ 158 (198)
T 1ryp_K 81 SSFVRQELAKSIRS--RRPYQVNVLIGGYDKKKNKPELYQIDYLGTKVELPYGAHGYSGFYTFSLLDHHYRPDMTTEEGL 158 (198)
T ss_dssp HHHHHHHHHHHTTS--SSCCCEEEEEEEEETTTTEEEEEEECTTCCEEECSEEECTTHHHHHHHHHHHHCCTTCCHHHHH
T ss_pred HHHHHHHHHHhccc--CCCceEEEEEEEEeCCCCCcEEEEECCCCCEEECCEEEEcccHHHHHHHHHhhcCCCCCHHHHH
Confidence 99999999988743 359999999999996 78999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhhhccC-CCCCcEEEEEEeeCCceEE
Q 027541 189 HTAILTLKEGFEGQ-ISEKNIEIGIIGEKKEFRQ 221 (222)
Q Consensus 189 ~l~~~~L~~~~~~d-~~~~~iei~ii~~~~~~~~ 221 (222)
+++++||+.+.++| .++.+++|++|+++| +++
T Consensus 159 ~l~~~al~~~~~~d~~s~~~i~v~vi~~~g-~~~ 191 (198)
T 1ryp_K 159 DLLKLCVQELEKRMPMDFKGVIVKIVDKDG-IRQ 191 (198)
T ss_dssp HHHHHHHHHHHHHCSBCCCCEEEEEEETTE-EEE
T ss_pred HHHHHHHHHHHHhCccCCCceEEEEEcCCC-EEE
Confidence 99999999999998 489999999999986 554
No 36
>1q5r_H Proteasome beta-type subunit 1; proteasome assembly, Pro-peptide, inter-subunit contacts, hydrolase; 3.10A {Rhodococcus erythropolis} SCOP: d.153.1.4 PDB: 2h6j_H
Probab=100.00 E-value=2.4e-45 Score=309.68 Aligned_cols=196 Identities=17% Similarity=0.196 Sum_probs=182.6
Q ss_pred HHHHhccCCcEEEEEeCCEEEEEEeecCCC-CcccCCccceEEEecCcEEEEEecChhhHHHHHHHHHHHHHHHHHHhCC
Q 027541 25 ALTAVGSGQTSLGIKASNGVVIATEKKLPS-ILVDESSVHKIQSLTPNIGVVYSGMGPDFRVLVRKSRKQAEQYHRLYKE 103 (222)
Q Consensus 25 a~~a~~~G~t~vgi~~~dgvvla~d~~~~~-~l~~~~~~~KI~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~ 103 (222)
|.||+++|+|+|||+++||||||+|+|.++ +++.+++.+||++|++|++|+++|..+|++.+.++++.+++.|++++++
T Consensus 58 a~~Av~~GtTiVgIk~kdGVVlAaD~r~t~G~li~~~~~~KI~~I~~~i~~~~aG~~aD~~~l~~~~r~~~~~y~~~~g~ 137 (294)
T 1q5r_H 58 SGDLAPHGTTIVALTYKGGVLLAGDRRATQGNLIASRDVEAVYVTDEYSAAGIAGTAGIAIELVRLFAVELEHYEKIEGV 137 (294)
T ss_dssp --CCSCBCCCEEEEECSSCEEEEECCCEEETTEEEESCCCCEEEEETTEEEEEEEBHHHHHHHHHHHHHHHHHHHHHHSS
T ss_pred HHHHHhcCceEEEEEECCEEEEEEcCccccCceeecCCcceEEEECCcEEEEEeecHHHHHHHHHHHHHHHHHhhHhhCC
Confidence 899999999999999999999999999996 7888899999999999999999999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHHHHhhcCceeeeeEeEEEEEEeCC-C-----CeEEEECCCCceEee--eeEEecCCcHHHHHHHH
Q 027541 104 PIPVTQLVRETAAVMQEFTQSGGVRPFGVSLLVAGYDDK-G-----PQLYQVDPSGSYFSW--KASAMGKNVSNAKTFLE 175 (222)
Q Consensus 104 ~i~~~~la~~l~~~~~~~~~~~~~rP~~~~~il~G~d~~-g-----~~L~~id~~G~~~~~--~~~a~G~gs~~~~~~L~ 175 (222)
+++++.++++|++++|.++++. +|||++++||||||++ | |+||.+||.|++.++ +++|+|+|+++++++|+
T Consensus 138 ~isv~~la~~la~~l~~~~~~~-~rp~~v~lLvaG~D~~~g~~~~~p~Ly~iDp~G~~~e~~~~~~AiGsgs~~a~~~Le 216 (294)
T 1q5r_H 138 PLTFDGKANRLASMVRGNLGAA-MQGLAVVPLLVGYDLDADDESRAGRIVSYDVVGGRYEERAGYHAVGSGSLFAKSALK 216 (294)
T ss_dssp CCCHHHHHHHHHHHHHHHHHHH-TTTTCEEEEEEEECTTCSCTTSCEEEEEECSSSCEEECCSSEEEESTTHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHHhhh-cCCcceEEEEEEEeCCCCcCCCCCEEEEECCCCeEEecCCCeEEEecCcHHHHHHHH
Confidence 9999999999999999988764 7999999999999985 6 999999999999999 89999999999999999
Q ss_pred HhccCCCCHHHHHHHHHHHHHhhhccCC-CCC--cE-----EEEEEeeCCceEEC
Q 027541 176 KRYVEEMELDDAVHTAILTLKEGFEGQI-SEK--NI-----EIGIIGEKKEFRQY 222 (222)
Q Consensus 176 ~~~~~~~~~~ea~~l~~~~L~~~~~~d~-~~~--~i-----ei~ii~~~~~~~~~ 222 (222)
+.|+++|+++||++++++||+.+.++|. ++. ++ +|++|+++| |+++
T Consensus 217 ~~y~~~ms~eEAi~la~~aL~~a~~rD~~sG~~~~ir~i~~ev~vI~~~g-~~~l 270 (294)
T 1q5r_H 217 KIYSPDSDEETALRAAIESLYDAADDDSATGGPDLTRGIYPTAVTITQAG-AVHV 270 (294)
T ss_dssp HHCCSSCCHHHHHHHHHHHHHHHHHHCTTTCCCBTTTTBCCEEEEEETTE-EEEC
T ss_pred HhccCCCCHHHHHHHHHHHHHHHHhhccccCCchhhcccCCEEEEEECCC-EEEc
Confidence 9999999999999999999999999986 443 25 999999876 7764
No 37
>1ryp_L 20S proteasome; multicatalytic proteinase, protein degradation, antigen processing, hydrolase, protease; 1.90A {Saccharomyces cerevisiae} SCOP: d.153.1.4 PDB: 1fnt_L 1vsy_L 1z7q_L 3l5q_P 1g65_K* 1g0u_K* 1jd2_K* 2f16_K* 2fak_K* 2fny_K* 2gpl_K* 2zcy_K* 3bdm_K* 3d29_K* 3dy3_K* 3dy4_K* 3e47_K* 3gpj_K* 3gpt_K* 3gpw_K* ...
Probab=100.00 E-value=5.6e-45 Score=294.95 Aligned_cols=184 Identities=16% Similarity=0.275 Sum_probs=176.0
Q ss_pred CcEEEEEeCCEEEEEEeecCCC-CcccCCccceEEEecCcEEEEEecChhhHHHHHHHHHHHHHHHHHHhCCCCCHHHHH
Q 027541 33 QTSLGIKASNGVVIATEKKLPS-ILVDESSVHKIQSLTPNIGVVYSGMGPDFRVLVRKSRKQAEQYHRLYKEPIPVTQLV 111 (222)
Q Consensus 33 ~t~vgi~~~dgvvla~d~~~~~-~l~~~~~~~KI~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~i~~~~la 111 (222)
+|+|||+++||||||+|+|.++ +++.+++.+||++|++|++|+++|..+|++.+.++++.+++.|+++++++++++.++
T Consensus 1 tt~vgi~~~dgVvlaaD~r~~~g~~~~~~~~~Ki~~i~~~i~~~~aG~~aD~~~l~~~~~~~~~~~~~~~~~~~~v~~la 80 (212)
T 1ryp_L 1 TTTLAFRFQGGIIVAVDSRATAGNWVASQTVKRVIEINPFLLGTMAGGAADCQFWETWLGSQCRLHELREKERISVAAAS 80 (212)
T ss_dssp CCEEEEEETTEEEEEECCCEEETTEEEESCCCCEEEEETTEEEECCBCHHHHHHHHHHHHHHHHHHHHHHSSCCCHHHHH
T ss_pred CcEEEEEeCCEEEEEEcCCcccCCeEecCcccceeeeCCcEEEEccccHHHHHHHHHHHHHHHHHHHHHcCCCCCHHHHH
Confidence 6899999999999999999997 788889999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhhcCceeeeeEeEEEEEEe-CCCCeEEEECCCCceEeeeeEEecCCcHHHHHHHHHhccCCCCHHHHHHH
Q 027541 112 RETAAVMQEFTQSGGVRPFGVSLLVAGYD-DKGPQLYQVDPSGSYFSWKASAMGKNVSNAKTFLEKRYVEEMELDDAVHT 190 (222)
Q Consensus 112 ~~l~~~~~~~~~~~~~rP~~~~~il~G~d-~~g~~L~~id~~G~~~~~~~~a~G~gs~~~~~~L~~~~~~~~~~~ea~~l 190 (222)
+++++.+|.++++ ||++++|+|||| +.||+||.+||.|++.+++++|+|+|++.++++|++.|+++|+++||+++
T Consensus 81 ~~l~~~~~~~~~~----p~~v~~lvaG~D~~~gp~Ly~idp~G~~~~~~~~aiGsgs~~a~~~Le~~~~~~~s~eea~~l 156 (212)
T 1ryp_L 81 KILSNLVYQYKGA----GLSMGTMICGYTRKEGPTIYYVDSDGTRLKGDIFCVGSGQTFAYGVLDSNYKWDLSVEDALYL 156 (212)
T ss_dssp HHHHHHHHHTTTS----CCCBEEEEEEEETTTEEEEEEEETTCCEEECSEEEESTTHHHHHHHHHHHCCTTCCHHHHHHH
T ss_pred HHHHHHHHhhCCC----CceEEEEEEEEeCCCCCEEEEEcCCceeEecCCEEEcCCHHHHHHHHHhhCCCCCCHHHHHHH
Confidence 9999999999864 899999999999 56899999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhhhccCC-CCCcEEEEEEeeCCceEE
Q 027541 191 AILTLKEGFEGQI-SEKNIEIGIIGEKKEFRQ 221 (222)
Q Consensus 191 ~~~~L~~~~~~d~-~~~~iei~ii~~~~~~~~ 221 (222)
+++||+.+.++|. ++.+++|++|+++| |++
T Consensus 157 a~~al~~~~~rd~~s~~~i~v~vi~~~g-~~~ 187 (212)
T 1ryp_L 157 GKRSILAAAHRDAYSGGSVNLYHVTEDG-WIY 187 (212)
T ss_dssp HHHHHHHHHHHBTTCCSEEEEEEEETTE-EEE
T ss_pred HHHHHHHHHHhccccCCceEEEEEcCCc-eEE
Confidence 9999999999984 89999999999886 765
No 38
>1g0u_M Proteasome component PRE4; ubiquitin, degradation, protease, NTN-hydrolase; 2.40A {Saccharomyces cerevisiae} SCOP: d.153.1.4 PDB: 2zcy_M* 3bdm_M* 3mg6_M* 3mg7_M* 3mg8_M* 3nzj_M* 3nzw_M* 3nzx_M*
Probab=100.00 E-value=1.5e-45 Score=307.76 Aligned_cols=198 Identities=19% Similarity=0.208 Sum_probs=183.5
Q ss_pred hhhHHHHhccCCcEEEEEeCCEEEEEEeecCCC-CcccCCccceEEEecCcEEEEEecChhhHHHHHHHHHHHHHHHHH-
Q 027541 22 IEHALTAVGSGQTSLGIKASNGVVIATEKKLPS-ILVDESSVHKIQSLTPNIGVVYSGMGPDFRVLVRKSRKQAEQYHR- 99 (222)
Q Consensus 22 ~eya~~a~~~G~t~vgi~~~dgvvla~d~~~~~-~l~~~~~~~KI~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~- 99 (222)
.+.+.+++.+|+|+|||+++||||||+|+|.+. .++.+++.+||++|++|++|+++|..+|++.|.++++.+++.|++
T Consensus 31 ~~~~~~av~~GtT~vgi~~~dgVVlAaD~r~t~g~~i~~~~~~KI~~i~d~i~~~~aG~~aD~~~l~~~lr~~~~~~~~~ 110 (266)
T 1g0u_M 31 MVNTQQPIVTGTSVISMKYDNGVIIAADNLGSYGSLLRFNGVERLIPVGDNTVVGISGDISDMQHIERLLKDLVTENAYD 110 (266)
T ss_dssp ---CCCCCEEECCEEEEEETTEEEEEEECCEEETTEEEECCCCCEEECTTSEEEEEEEEHHHHHHHHHHHHHHHHHHHTT
T ss_pred hhhhccCcccCceEEEEEECCEEEEEEcCCcccCceeecCCcCcEEEcCCCEEEEeccCHHHHHHHHHHHHHHHHHhhhc
Confidence 456788899999999999999999999999986 678888999999999999999999999999999999999999998
Q ss_pred ----HhCCCCCHHHHHHHHHHHHHHHhhcCceeeeeEeEEEEEEeCC-CCeEEEECCCCceEeeeeEEecCCcHHHHHHH
Q 027541 100 ----LYKEPIPVTQLVRETAAVMQEFTQSGGVRPFGVSLLVAGYDDK-GPQLYQVDPSGSYFSWKASAMGKNVSNAKTFL 174 (222)
Q Consensus 100 ----~~~~~i~~~~la~~l~~~~~~~~~~~~~rP~~~~~il~G~d~~-g~~L~~id~~G~~~~~~~~a~G~gs~~~~~~L 174 (222)
+++++++++.++++++++++.+ +.++|||++++||||+|++ ||+||.+||.|++.+++++|+|+|++.++++|
T Consensus 111 ~~~~~~~~~~~v~~la~~l~~~ly~~--r~~~~P~~v~~lvaG~D~~~gp~Ly~idp~G~~~~~~~~aiGsgs~~a~~~L 188 (266)
T 1g0u_M 111 NPLADAEEALEPSYIFEYLATVMYQR--RSKMNPLWNAIIVAGVQSNGDQFLRYVNLLGVTYSSPTLATGFGAHMANPLL 188 (266)
T ss_dssp CTTTTTTTSCCHHHHHHHHHHHHHHH--HHTTCCCCEEEEEEEECTTSCEEEEEEETTCCEECCSEEECTHHHHTHHHHH
T ss_pred cchhhcCCCCCHHHHHHHHHHHHHHh--ccCCCCceEEEEEEEEcCCCCEEEEEECCCCCEEeCCEEEEccCHHHHHHHH
Confidence 8999999999999999999654 3457999999999999985 89999999999999999999999999999999
Q ss_pred HHhccC-----CCCHHHHHHHHHHHHHhhhccCC-CCCcEEEEEEeeCCceEE
Q 027541 175 EKRYVE-----EMELDDAVHTAILTLKEGFEGQI-SEKNIEIGIIGEKKEFRQ 221 (222)
Q Consensus 175 ~~~~~~-----~~~~~ea~~l~~~~L~~~~~~d~-~~~~iei~ii~~~~~~~~ 221 (222)
|+.|++ +|++|||++++++||+.+.++|. ++.+++|++|++++.|++
T Consensus 189 e~~~~~~~~~~~ms~eeA~~la~~al~~a~~rd~~sg~~i~v~vI~k~~g~~~ 241 (266)
T 1g0u_M 189 RKVVDRESDIPKTTVQVAEEAIVNAMRVLYYRDARSSRNFSLAIIDKNTGLTF 241 (266)
T ss_dssp TTTCSSGGGGGGCCHHHHHHHHHHHHHHHHHHBTTCCSEEEEEEEETTTEEEE
T ss_pred HHhhcccccCCCCCHHHHHHHHHHHHHHHHHhcCCCCCcEEEEEEECCCCeEE
Confidence 999999 99999999999999999999995 899999999999844765
No 39
>1ryp_M 20S proteasome; multicatalytic proteinase, protein degradation, antigen processing, hydrolase, protease; 1.90A {Saccharomyces cerevisiae} SCOP: d.153.1.4 PDB: 1fnt_M* 1jd2_L* 1g65_L 1vsy_M 1z7q_M 2f16_L* 2fak_L* 2fny_L* 2gpl_L* 3d29_L* 3dy3_L* 3dy4_L* 3e47_L* 3gpj_L* 3gpt_L* 3gpw_L* 3hye_L* 3l5q_Q 3mg0_L* 3mg4_L* ...
Probab=100.00 E-value=2.2e-44 Score=293.48 Aligned_cols=186 Identities=21% Similarity=0.300 Sum_probs=175.1
Q ss_pred hccCCcEEEEEeCCEEEEEEeecCCCC-cccCCccceEEEecCcEEEEEecChhhHHHHHHHHHHHHHHHHHHhC-CCCC
Q 027541 29 VGSGQTSLGIKASNGVVIATEKKLPSI-LVDESSVHKIQSLTPNIGVVYSGMGPDFRVLVRKSRKQAEQYHRLYK-EPIP 106 (222)
Q Consensus 29 ~~~G~t~vgi~~~dgvvla~d~~~~~~-l~~~~~~~KI~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~-~~i~ 106 (222)
+++|+|+|||+++||||||+|+|.++. ++.+++.+||++|+++++++++|..+|++.+.++++.+++.|+++++ ++++
T Consensus 6 v~~Gtt~vgi~~~dgVvlaaD~r~~~g~~i~~~~~~Ki~~i~~~i~~~~aG~~aD~~~l~~~~~~~~~~~~~~~~~~~~~ 85 (222)
T 1ryp_M 6 GDNGGTILGIAGEDFAVLAGDTRNITDYSINSRYEPKVFDCGDNIVMSANGFAADGDALVKRFKNSVKWYHFDHNDKKLS 85 (222)
T ss_dssp CCCCCEEEEEECSSCEEEEEECCEEETTEEEESCCCCCEEEETTEEEEEEESHHHHHHHHHHHHHHHHHHHHHTTTCCCC
T ss_pred ccCCccEEEEEeCCEEEEEEecccccCCEecCCCcCcEEEeCCCEEEEccccHHHHHHHHHHHHHHHHHHHHHcCCCCCC
Confidence 679999999999999999999999975 45678999999999999999999999999999999999999999999 9999
Q ss_pred HHHHHHHHHHHHHHHhhcCceeeeeEeEEEEEEeCCC-CeEEEECCCCceEeeeeEEecCCcHHHHHHHHHh--------
Q 027541 107 VTQLVRETAAVMQEFTQSGGVRPFGVSLLVAGYDDKG-PQLYQVDPSGSYFSWKASAMGKNVSNAKTFLEKR-------- 177 (222)
Q Consensus 107 ~~~la~~l~~~~~~~~~~~~~rP~~~~~il~G~d~~g-~~L~~id~~G~~~~~~~~a~G~gs~~~~~~L~~~-------- 177 (222)
++.+|+++++.++.+ + .+||++++||||||++| |+||.+||.|++.+++++|+|+|++.++++||+.
T Consensus 86 v~~la~~l~~~ly~~--r--~~P~~v~~ivaG~D~~g~p~Ly~~dp~G~~~~~~~~a~Gsg~~~a~~~Le~~~~~~~~~~ 161 (222)
T 1ryp_M 86 INSAARNIQHLLYGK--R--FFPYYVHTIIAGLDEDGKGAVYSFDPVGSYEREQCRAGGAAASLIMPFLDNQVNFKNQYE 161 (222)
T ss_dssp HHHHHHHHHHHHHTT--T--TSCCCEEEEEEEECTTSCEEEEEECTTSCEEEESEEEEETTHHHHHHHHHHHTSCTTCBC
T ss_pred HHHHHHHHHHHHHhc--C--CCCceEEEEEEEEcCCCCeEEEEECCCcCEEecCEEEEcCcHHHHHHHHhcccccccccc
Confidence 999999999998543 2 67999999999999755 9999999999999999999999999999999998
Q ss_pred ---------ccCCCCHHHHHHHHHHHHHhhhccCC-CCCcEEEEEEeeCCc
Q 027541 178 ---------YVEEMELDDAVHTAILTLKEGFEGQI-SEKNIEIGIIGEKKE 218 (222)
Q Consensus 178 ---------~~~~~~~~ea~~l~~~~L~~~~~~d~-~~~~iei~ii~~~~~ 218 (222)
|+++|++|||++++++||..+.++|. ++.+++|++|+++|.
T Consensus 162 ~~~~~~~~~~~~~~s~eeA~~la~~al~~a~~rd~~sg~~i~v~vi~~~g~ 212 (222)
T 1ryp_M 162 PGTNGKVKKPLKYLSVEEVIKLVRDSFTSATERHIQVGDGLEILIVTKDGV 212 (222)
T ss_dssp TTSTTCSBCCCCCCCHHHHHHHHHHHHHHHHHHBTTCCSEEEEEEEETTEE
T ss_pred cccccccccCCCCCCHHHHHHHHHHHHHHHHHhcccCCCcEEEEEEcCCCe
Confidence 88999999999999999999999995 899999999999874
No 40
>1ryp_J 20S proteasome; multicatalytic proteinase, protein degradation, antigen processing, hydrolase, protease; 1.90A {Saccharomyces cerevisiae} SCOP: d.153.1.4 PDB: 1jd2_I* 1g65_I 1vsy_J 2f16_I* 2fak_I* 2fny_I* 2gpl_I* 3d29_I* 3dy3_I* 3dy4_I* 3e47_I* 3gpj_I* 3gpt_I* 3gpw_I* 3hye_I* 3l5q_N 3mg0_I* 3mg4_I* 3oeu_I* 3oev_I* ...
Probab=100.00 E-value=1.2e-43 Score=285.49 Aligned_cols=185 Identities=17% Similarity=0.169 Sum_probs=172.3
Q ss_pred hccCCcEEEEEeCCEEEEEEeecCCCCcc-cCCccceEEEecCcEEEEEecChhhHHHHHHHHHHHHHHHHHHhCCCCCH
Q 027541 29 VGSGQTSLGIKASNGVVIATEKKLPSILV-DESSVHKIQSLTPNIGVVYSGMGPDFRVLVRKSRKQAEQYHRLYKEPIPV 107 (222)
Q Consensus 29 ~~~G~t~vgi~~~dgvvla~d~~~~~~l~-~~~~~~KI~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~i~~ 107 (222)
+.+|+|+|||+++||||||+|+|.++.+. ..++.+||++|+ |++++++|..+|++.+.++++.+++.|++++++++++
T Consensus 5 ~~~Gtt~vgi~~~dgVvlaaD~r~~~g~~~~~~~~~Ki~~i~-~i~~~~aG~~aD~~~l~~~~~~~~~~~~~~~~~~~~v 83 (204)
T 1ryp_J 5 SINGGIVVAMTGKDCVAIACDLRLGSQSLGVSNKFEKIFHYG-HVFLGITGLATDVTTLNEMFRYKTNLYKLKEERAIEP 83 (204)
T ss_dssp GSSCCEEEEEECSSEEEEEEECCEEETTEEEESCCCCEEEET-TEEEEEEECHHHHHHHHHHHHHHHHHHHHHHSSCCCH
T ss_pred CCCCCeEEEEEeCCEEEEEEcCCcccCCEEeeCCcceEEEeC-CEEEEeeEcHHHHHHHHHHHHHHHHHHhhccCCCCCH
Confidence 57899999999999999999999997554 455999999999 9999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHhhcCceeeeeEeEEEEEEeC--CCCeEEEECCCCceEee-eeEEecCCcHHHHHHHHHhccCCCCH
Q 027541 108 TQLVRETAAVMQEFTQSGGVRPFGVSLLVAGYDD--KGPQLYQVDPSGSYFSW-KASAMGKNVSNAKTFLEKRYVEEMEL 184 (222)
Q Consensus 108 ~~la~~l~~~~~~~~~~~~~rP~~~~~il~G~d~--~g~~L~~id~~G~~~~~-~~~a~G~gs~~~~~~L~~~~~~~~~~ 184 (222)
+.+++++++.+ |+++. .||++++|+||||+ +||+||.+||.|++.++ .++|+|+|++.++++||+.|+++|++
T Consensus 84 ~~la~~l~~~~--y~~~~--~P~~v~~lvaG~D~~~~gp~Ly~idp~G~~~~~~~~~aiG~gs~~a~~~Le~~~~~~~s~ 159 (204)
T 1ryp_J 84 ETFTQLVSSSL--YERRF--GPYFVGPVVAGINSKSGKPFIAGFDLIGCIDEAKDFIVSGTASDQLFGMCESLYEPNLEP 159 (204)
T ss_dssp HHHHHHHHHHH--HTTTT--SCCCEEEEEEEECTTTCCEEEEEECTTCCEECCSSEEEEETTHHHHHHHHHHHCCSSCCH
T ss_pred HHHHHHHHHHH--HHhcC--CCceEEEEEEEEeCCCCceEEEEECCCCCccccCceeEeccCHHHHHHHHhhhcCCCcCH
Confidence 99999999999 55543 39999999999996 78999999999999765 67999999999999999999999999
Q ss_pred HHHHHHHHHHHHhhhccCC-CCCcEEEEEEeeCCc
Q 027541 185 DDAVHTAILTLKEGFEGQI-SEKNIEIGIIGEKKE 218 (222)
Q Consensus 185 ~ea~~l~~~~L~~~~~~d~-~~~~iei~ii~~~~~ 218 (222)
|||++++++||+.+.++|. ++.+++|++|+++|.
T Consensus 160 eea~~l~~~al~~~~~~d~~s~~~i~v~vi~~~g~ 194 (204)
T 1ryp_J 160 EDLFETISQALLNAADRDALSGWGAVVYIIKKDEV 194 (204)
T ss_dssp HHHHHHHHHHHHHHHTTBTTSCSCEEEEEEESSCE
T ss_pred HHHHHHHHHHHHHHHHhCcccCCcEEEEEEcCCCE
Confidence 9999999999999999995 899999999999985
No 41
>1iru_J 20S proteasome; cell cycle, immune response, proteolysis, ubiquitin, hydrolase; 2.75A {Bos taurus} SCOP: d.153.1.4 PDB: 3unb_I* 3une_I 3unf_I* 3unh_I
Probab=100.00 E-value=5.3e-44 Score=287.77 Aligned_cols=186 Identities=16% Similarity=0.222 Sum_probs=172.8
Q ss_pred hccCCcEEEEEeCCEEEEEEeecCCCCcc-cCCccceEEEecCcEEEEEecChhhHHHHHHHHHHHHHHHHHHhCCCCCH
Q 027541 29 VGSGQTSLGIKASNGVVIATEKKLPSILV-DESSVHKIQSLTPNIGVVYSGMGPDFRVLVRKSRKQAEQYHRLYKEPIPV 107 (222)
Q Consensus 29 ~~~G~t~vgi~~~dgvvla~d~~~~~~l~-~~~~~~KI~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~i~~ 107 (222)
+.+|+|+|||+++||||||+|+|.++.+. ..++.+||++|++|++++++|..+|++.+.++++.+++.|++++++++++
T Consensus 5 ~~~Gtt~vgi~~~dgVvlaaD~r~~~g~~~~~~~~~Ki~~i~~~i~~~~aG~~aD~~~l~~~~~~~~~~~~~~~~~~~~v 84 (205)
T 1iru_J 5 SYNGGAVMAMKGKNCVAIAADRRFGIQAQLVTTDFQKIFPMGDRLYIGLAGLATDVQTVAQRLKFRLNLYELKEGRQIKP 84 (205)
T ss_dssp TSSCCEEEEEECSSEEEEEEECCEEETTEEEESCCCCEEECSTTEEEECCSCHHHHHHHHHHHHHHHHHHHHHSSSCCCH
T ss_pred cCCCCeEEEEEeCCEEEEEECCccccCCeEeecCCccEEEeCCCEEEEccccHHHHHHHHHHHHHHHHHHHhhcCCCCCH
Confidence 46899999999999999999999997554 45589999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHhhcCceeeeeEeEEEEEEeC--CCCeEEEECCCCceEee-eeEEecCCcHHHHHHHHHhccCCCCH
Q 027541 108 TQLVRETAAVMQEFTQSGGVRPFGVSLLVAGYDD--KGPQLYQVDPSGSYFSW-KASAMGKNVSNAKTFLEKRYVEEMEL 184 (222)
Q Consensus 108 ~~la~~l~~~~~~~~~~~~~rP~~~~~il~G~d~--~g~~L~~id~~G~~~~~-~~~a~G~gs~~~~~~L~~~~~~~~~~ 184 (222)
+.+++++++.+ |+++ ..||++++|+||||+ +||+||.+||.|++.++ .++|+|+|++.++++||+.|+++|++
T Consensus 85 ~~la~~l~~~~--y~~r--~~P~~v~~lvaG~D~~~~~p~Ly~idp~G~~~~~~~~~aiG~gs~~a~~~Le~~~~~~~s~ 160 (205)
T 1iru_J 85 YTLMSMVANLL--YEKR--FGPYYTEPVIAGLDPKTFKPFICSLDLIGCPMVTDDFVVSGTCAEQMYGMCESLWEPNMDP 160 (205)
T ss_dssp HHHHHHHHHHH--HTTT--TSCCSCCCEEEEECTTSCCEEEEEECTTCCEEECSSEEEEETTHHHHHHHHHHHCCSSCCH
T ss_pred HHHHHHHHHHH--HHhc--CCCceEEEEEEEEeCCCCCeEEEEECCCCCccccCCeeEeeeCHHHHHHHHhcccCCCCCH
Confidence 99999999999 4544 349999999999995 78999999999999665 67999999999999999999999999
Q ss_pred HHHHHHHHHHHHhhhccCC-CCCcEEEEEEeeCCc
Q 027541 185 DDAVHTAILTLKEGFEGQI-SEKNIEIGIIGEKKE 218 (222)
Q Consensus 185 ~ea~~l~~~~L~~~~~~d~-~~~~iei~ii~~~~~ 218 (222)
+||++++.+||+.+.++|. ++.+++|++|+++|.
T Consensus 161 eea~~l~~~al~~~~~~d~~s~~~i~v~vi~~~g~ 195 (205)
T 1iru_J 161 DHLFETISQAMLNAVDRDAVSGMGVIVHIIEKDKI 195 (205)
T ss_dssp HHHHHHHHHHHHHHGGGBTTSCSCEEEEEEESSBE
T ss_pred HHHHHHHHHHHHHHHHhCcccCCceEEEEEcCCCE
Confidence 9999999999999999996 799999999999984
No 42
>1q5q_H Proteasome beta-type subunit 1; proteasome assembly, Pro-peptide, inter-subunit contacts, RH erythropolis, hydrolase; 2.60A {Rhodococcus erythropolis} SCOP: d.153.1.4
Probab=100.00 E-value=4e-44 Score=294.24 Aligned_cols=188 Identities=18% Similarity=0.219 Sum_probs=176.2
Q ss_pred CcEEEEEeCCEEEEEEeecCCC-CcccCCccceEEEecCcEEEEEecChhhHHHHHHHHHHHHHHHHHHhCCCCCHHHHH
Q 027541 33 QTSLGIKASNGVVIATEKKLPS-ILVDESSVHKIQSLTPNIGVVYSGMGPDFRVLVRKSRKQAEQYHRLYKEPIPVTQLV 111 (222)
Q Consensus 33 ~t~vgi~~~dgvvla~d~~~~~-~l~~~~~~~KI~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~i~~~~la 111 (222)
+|+|||+++||||||+|+|.++ +++.+++.+||++|+++++|+++|..+|++.+.++++.+++.|+++++++++++.++
T Consensus 1 tT~vgi~~~dgVVlaaD~r~~~g~l~~~~~~~KI~~i~~~i~~~~aG~~aD~~~l~~~~~~~~~~~~~~~~~~~~v~~la 80 (235)
T 1q5q_H 1 TTIVALTYKGGVLLAGDRRATQGNLIASRDVEKVYVTDEYSAAGIAGTAGIAIELVRLFAVELEHYEKIEGVPLTFDGKA 80 (235)
T ss_dssp CCEEEEECSSCEEEEECCCEEETTEEEESCCCCEEEEETTEEEEEEECHHHHHHHHHHHHHHHHHHHHHHSSCCCHHHHH
T ss_pred CeEEEEEECCEEEEEECCCCCcCCEEecCCcCcEEEeCCcEEEEcCCcHHHHHHHHHHHHHHHHHhHHHhCCCCCHHHHH
Confidence 6899999999999999999996 788889999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhhcCceeeeeEeEEEEEEeCC-C-----CeEEEECCCCceEee--eeEEecCCcHHHHHHHHHhccCCCC
Q 027541 112 RETAAVMQEFTQSGGVRPFGVSLLVAGYDDK-G-----PQLYQVDPSGSYFSW--KASAMGKNVSNAKTFLEKRYVEEME 183 (222)
Q Consensus 112 ~~l~~~~~~~~~~~~~rP~~~~~il~G~d~~-g-----~~L~~id~~G~~~~~--~~~a~G~gs~~~~~~L~~~~~~~~~ 183 (222)
+.|++++|.++++. +|||++++||||||++ | |+||.+||.|++.++ +++|+|+|++.++++|++.|+++|+
T Consensus 81 ~~l~~~~~~~~~~~-~rp~~v~~lvaG~D~~~g~~~~~p~Ly~idp~G~~~~~~~~~~aiGsgs~~a~~~Le~~~~~~ms 159 (235)
T 1q5q_H 81 NRLASMVRGNLGAA-MQGLAVVPLLVGYDLDADDESRAGRIVSYDVVGGRYEERAGYHAVGSGSLFAKSALKKIYSPDSD 159 (235)
T ss_dssp HHHHHHHHTTHHHH-TTTCCEEEEEEEECTTCSSTTSCEEEEEECTTSCEEECCSSEEEESTTHHHHHHHHHHHCCTTCC
T ss_pred HHHHHHHHHHHHhh-hcccceEEEEEEEECCCCccCCCCEEEEECCCCceEEeCCCeEEECCCHHHHHHHHHhhcCCCCC
Confidence 99999999988764 7999999999999986 7 999999999999999 9999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhhhccCC-CCC-c-E-----EEEEEeeCCceEEC
Q 027541 184 LDDAVHTAILTLKEGFEGQI-SEK-N-I-----EIGIIGEKKEFRQY 222 (222)
Q Consensus 184 ~~ea~~l~~~~L~~~~~~d~-~~~-~-i-----ei~ii~~~~~~~~~ 222 (222)
++||++++++||+.+.++|. ++. . + +|++|+++| |+++
T Consensus 160 ~eeA~~la~~al~~a~~~d~~sg~~~~i~~~~~ev~vi~~~g-~~~l 205 (235)
T 1q5q_H 160 EETALRAAIESLYDAADDDSATGGPDLTRGIYPTAVTITQAG-AVHV 205 (235)
T ss_dssp HHHHHHHHHHHHHHHHHHCTTTCCCBTTTTBCCEEEEEETTE-EEEC
T ss_pred HHHHHHHHHHHHHHHHhhCcccCCcccccccccEEEEEeCCC-eEEe
Confidence 99999999999999999986 443 2 2 999999876 7764
No 43
>1iru_K 20S proteasome; cell cycle, immune response, proteolysis, ubiquitin, hydrolase; 2.75A {Bos taurus} SCOP: d.153.1.4 PDB: 3unb_J* 3une_J 3unf_J* 3unh_J
Probab=100.00 E-value=1.2e-43 Score=284.96 Aligned_cols=184 Identities=21% Similarity=0.264 Sum_probs=171.7
Q ss_pred CCcEEEEEeCCEEEEEEeecCCC-CcccCCccceEEEecCcEEEEEecChhhHHHHHHHHHHHHHHHHHHhCCCCCHHHH
Q 027541 32 GQTSLGIKASNGVVIATEKKLPS-ILVDESSVHKIQSLTPNIGVVYSGMGPDFRVLVRKSRKQAEQYHRLYKEPIPVTQL 110 (222)
Q Consensus 32 G~t~vgi~~~dgvvla~d~~~~~-~l~~~~~~~KI~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~i~~~~l 110 (222)
.+|+|||+++||||||+|+|.++ .++.+++.+||++|++|++++++|..+|++.+.++++.+++.|+++++++++++.+
T Consensus 1 Mtt~vgi~~~dgVvlaaD~r~~~g~~~~~~~~~Ki~~i~~~i~~~~aG~~aD~~~l~~~~~~~~~~~~~~~~~~~~v~~~ 80 (201)
T 1iru_K 1 MEYLIGIQGPDYVLVASDRVAASNIVQMKDDHDKMFKMSEKILLLCVGEAGDTVQFAEYIQKNVQLYKMRNGYELSPTAA 80 (201)
T ss_dssp CCCEEEEECSSEEEEEEECCEEETTEEEESSCCCEEECSSSEEEEEEESTTHHHHHHHHHHHHHHHHHHHHSSCCCHHHH
T ss_pred CceEEEEEeCCEEEEEEcCccccCcEEEccCcceEEEecCCEEEEeCcCHHHHHHHHHHHHHHHHHHHHHcCCCCCHHHH
Confidence 37999999999999999999987 68888999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhhcCceeeeeEeEEEEEEeC-CCCeEEEECCCCceEeeeeEEecCCcHHHHHHHHHhccCCCCHHHHHH
Q 027541 111 VRETAAVMQEFTQSGGVRPFGVSLLVAGYDD-KGPQLYQVDPSGSYFSWKASAMGKNVSNAKTFLEKRYVEEMELDDAVH 189 (222)
Q Consensus 111 a~~l~~~~~~~~~~~~~rP~~~~~il~G~d~-~g~~L~~id~~G~~~~~~~~a~G~gs~~~~~~L~~~~~~~~~~~ea~~ 189 (222)
++++++.+....+ . .|||++++|+||||+ +||+||.+||.|++.+++++|+|+|++.++++||+.|+++|+++||++
T Consensus 81 a~~~~~~l~~~~~-~-~~p~~~~~lvaG~D~~~gp~Ly~id~~G~~~~~~~~aiGsgs~~a~~~Le~~~~~~~s~eea~~ 158 (201)
T 1iru_K 81 ANFTRRNLADCLR-S-RTPYHVNLLLAGYDEHEGPALYYMDYLAALAKAPFAAHGYGAFLTLSILDRYYTPTISRERAVE 158 (201)
T ss_dssp HHHHHHHHHHHHT-S-SSCCCEEEEEEEEETTTEEEEEEECTTCCEEECSEEEESHHHHHHHHHHHHHCCTTCCHHHHHH
T ss_pred HHHHHHHHHHHHh-c-CCCccEEEEEEEEeCCCCeEEEEECCCcCeEECCEEEECCcHHHHHHHHHhcccCCCCHHHHHH
Confidence 9998876522222 1 379999999999997 689999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhhhccCC-CCCcEEEEEEeeCC
Q 027541 190 TAILTLKEGFEGQI-SEKNIEIGIIGEKK 217 (222)
Q Consensus 190 l~~~~L~~~~~~d~-~~~~iei~ii~~~~ 217 (222)
++++||+.+.++|. ++.+++|++|+++|
T Consensus 159 l~~~al~~a~~rd~~sg~~i~v~vi~~~g 187 (201)
T 1iru_K 159 LLRKCLEELQKRFILNLPTFSVRIIDKNG 187 (201)
T ss_dssp HHHHHHHHHHHTBCBCCCCEEEEEEETTE
T ss_pred HHHHHHHHHHhhccccCCceEEEEEcCCC
Confidence 99999999999996 89999999999987
No 44
>1iru_I 20S proteasome; cell cycle, immune response, proteolysis, ubiquitin, hydrolase; 2.75A {Bos taurus} SCOP: d.153.1.4 PDB: 3unb_H* 3une_H
Probab=100.00 E-value=1.5e-43 Score=290.63 Aligned_cols=183 Identities=21% Similarity=0.317 Sum_probs=172.7
Q ss_pred CcEEEEEeCCEEEEEEeecCCCCc-ccCCccceEEEecCcEEEEEecChhhHHHHHHHHHHHHHHHHHHhCCCCCHHHHH
Q 027541 33 QTSLGIKASNGVVIATEKKLPSIL-VDESSVHKIQSLTPNIGVVYSGMGPDFRVLVRKSRKQAEQYHRLYKEPIPVTQLV 111 (222)
Q Consensus 33 ~t~vgi~~~dgvvla~d~~~~~~l-~~~~~~~KI~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~i~~~~la 111 (222)
+|+|||+++||||||+|+|.++.+ +..++.+||++|++|++|+++|..+|++.+.++++.+++.|+++++++++++.++
T Consensus 1 TTivgi~~~dgVVlaaD~r~t~g~~~~~~~~~KI~~i~~~i~~~~aG~~aD~~~l~~~~~~~~~~~~~~~~~~~~v~~la 80 (234)
T 1iru_I 1 TTIAGVVYKDGIVLGADTRATEGMVVADKNCSKIHFISPNIYCCGAGTAADTDMTTQLISSNLELHSLSTGRLPRVVTAN 80 (234)
T ss_dssp CCEEEEEETTEEEEEECCCEESSSBEEESSCCCEEEEETTEEEEEEESHHHHHHHHHHHHHHHHHHHHHHCSCCCHHHHH
T ss_pred CeEEEEEeCCEEEEEEcCCcccCceeccCcccceEEecCCEEEEecCcHHHHHHHHHHHHHHHHHHHHhcCCCCCHHHHH
Confidence 689999999999999999999754 4567899999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhhcCceeeeeEeEEEEEEeCCCCeEEEECCCCceEeeeeEEecCCcHHHHHHHHHhccCCCCHHHHHHHH
Q 027541 112 RETAAVMQEFTQSGGVRPFGVSLLVAGYDDKGPQLYQVDPSGSYFSWKASAMGKNVSNAKTFLEKRYVEEMELDDAVHTA 191 (222)
Q Consensus 112 ~~l~~~~~~~~~~~~~rP~~~~~il~G~d~~g~~L~~id~~G~~~~~~~~a~G~gs~~~~~~L~~~~~~~~~~~ea~~l~ 191 (222)
+++++.++.++ +||++++|+||||++||+||.+||.|++.+++++|+|+|++.++++|++.|+++|+++||++++
T Consensus 81 ~~l~~~l~~~~-----~~~~v~llvaG~D~~gp~Ly~idp~G~~~~~~~~aiGsgs~~a~~~Le~~~~~~ms~eeA~~la 155 (234)
T 1iru_I 81 RMLKQMLFRYR-----GYIGAALVLGGVDVTGPHLYSIYPHGSTDKLPYVTMGSGSLAAMAVFEDKFRPDMEEEEAKNLV 155 (234)
T ss_dssp HHHHHHHHHTT-----TCSCEEEEEEEECSSCEEEEEECTTSCEEECSEEEESTTHHHHHHHHHHSCCTTCCHHHHHTHH
T ss_pred HHHHHHHHhcC-----CCCceeEEEEEEcCCCCEEEEECCCCCEEecCEEEECCchHHHHHHHHHhccCCCCHHHHHHHH
Confidence 99999988763 5899999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhhhccCC-CCCcEEEEEEeeCCceEE
Q 027541 192 ILTLKEGFEGQI-SEKNIEIGIIGEKKEFRQ 221 (222)
Q Consensus 192 ~~~L~~~~~~d~-~~~~iei~ii~~~~~~~~ 221 (222)
.+||+.+.++|. ++.+++|++|+++| +++
T Consensus 156 ~~al~~a~~~d~~sg~~i~v~vi~k~g-~~~ 185 (234)
T 1iru_I 156 SEAIAAGIFNDLGSGSNIDLCVISKNK-LDF 185 (234)
T ss_dssp HHHHHHHHHHCTTCCSCEEEEEEETTE-EEC
T ss_pred HHHHHHHHHhcccCCCCEEEEEEECCc-EEE
Confidence 999999999996 79999999999986 543
No 45
>3unf_N Proteasome subunit beta type-9; antigen presentation, drug development, protein degradation, hydrolase-hydrolase inhibitor complex; HET: 04C; 2.90A {Mus musculus} PDB: 3unh_N
Probab=100.00 E-value=2.7e-43 Score=282.40 Aligned_cols=183 Identities=18% Similarity=0.218 Sum_probs=170.5
Q ss_pred CcEEEEEeCCEEEEEEeecCCCC-cccCCccceEEEecCcEEEEEecChhhHHHHHHHHHHHHHHHHHHhCCCCCHHHHH
Q 027541 33 QTSLGIKASNGVVIATEKKLPSI-LVDESSVHKIQSLTPNIGVVYSGMGPDFRVLVRKSRKQAEQYHRLYKEPIPVTQLV 111 (222)
Q Consensus 33 ~t~vgi~~~dgvvla~d~~~~~~-l~~~~~~~KI~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~i~~~~la 111 (222)
||+|||+++||||||+|+|.++. ++.+++.+||++|++|++++++|..+|++.+.++++.+++.|+++++++++++.++
T Consensus 1 TT~vgi~~~dgVvlaaD~r~~~g~~~~~~~~~Ki~~i~~~i~~~~aG~~aD~~~l~~~~~~~~~~~~~~~~~~~~v~~~a 80 (199)
T 3unf_N 1 TTIMAVEFDGGVVVGSDSRVSAGTAVVNRVFDKLSPLHQRIFCALSGSAADAQAIADMAAYQLELHGLELEEPPLVLAAA 80 (199)
T ss_dssp CEEEEEECSSCEEEEECCCEEETTEEEESSCCCEEEEETTEEEEECSCHHHHHHHHHHHHHHHHHHHHHTTSCCCHHHHH
T ss_pred CeEEEEEeCCeEEEEECCcccCCceeEccccCceEEcCCCEEEEecccHHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHH
Confidence 68999999999999999999874 88889999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhhcCceeeeeEeEEEEEEeC-CCCeEEEECCCCceEee-eeEEecCCcHHHHHHHHHhccCCCCHHHHHH
Q 027541 112 RETAAVMQEFTQSGGVRPFGVSLLVAGYDD-KGPQLYQVDPSGSYFSW-KASAMGKNVSNAKTFLEKRYVEEMELDDAVH 189 (222)
Q Consensus 112 ~~l~~~~~~~~~~~~~rP~~~~~il~G~d~-~g~~L~~id~~G~~~~~-~~~a~G~gs~~~~~~L~~~~~~~~~~~ea~~ 189 (222)
+++++.++.+ .|||++++||||||+ +||+||. |.|++.++ +++++|+|++.++++||+.|+++|+++||++
T Consensus 81 ~~l~~~l~~~-----~~p~~v~~lvaG~D~~~~p~ly~--p~G~~~~~~~~~~~Gsgs~~a~~~Le~~~~~~ms~eea~~ 153 (199)
T 3unf_N 81 NVVKNISYKY-----REDLLAHLIVAGWDQREGGQVYG--TMGGMLIRQPFTIGGSGSSYIYGYVDAAYKPGMTPEECRR 153 (199)
T ss_dssp HHHHHHHHHT-----TTTCCCCEEEEEEETTTEEEEEE--CGGGCCEECSEEEEEGGGGGGHHHHHHHCCSSCCHHHHHH
T ss_pred HHHHHHHHhc-----CCCceEEEEEEEEeCCCCcEEEE--ECCCceecCCEEEEccCHHHHHHHHHhhcCCCCCHHHHHH
Confidence 9999999876 359999999999998 6799999 99997655 5666799999999999999999999999999
Q ss_pred HHHHHHHhhhccCC-CCCcEEEEEEeeCC-ceEEC
Q 027541 190 TAILTLKEGFEGQI-SEKNIEIGIIGEKK-EFRQY 222 (222)
Q Consensus 190 l~~~~L~~~~~~d~-~~~~iei~ii~~~~-~~~~~ 222 (222)
++.+||+.+.++|. ++.+++|++|+++| +|++|
T Consensus 154 la~~al~~~~~~d~~sg~~i~v~vi~~~g~~~~~l 188 (199)
T 3unf_N 154 FTTNAITLAMNRDGSSGGVIYLVTITAAGVDHRVI 188 (199)
T ss_dssp HHHHHHHHHHHHCTTCCSCEEEEEECSSCEEEEEE
T ss_pred HHHHHHHHHHHhccccCCCeEEEEEcCCCEEEEEc
Confidence 99999999999995 89999999999998 46653
No 46
>2z3b_A ATP-dependent protease HSLV; N-terminal nucleophIle hydrolase; 2.50A {Bacillus subtilis} SCOP: d.153.1.4 PDB: 2z3a_A 1yyf_D* 3ty6_A
Probab=100.00 E-value=7.4e-37 Score=241.36 Aligned_cols=168 Identities=15% Similarity=0.133 Sum_probs=149.3
Q ss_pred ccCCcEEEEEeCCEEEEEEeecCCC-Cc-ccCCccceEEEe-cCcEEEEEecChhhHHHHHHHHHHHHHHHHHHhCCCCC
Q 027541 30 GSGQTSLGIKASNGVVIATEKKLPS-IL-VDESSVHKIQSL-TPNIGVVYSGMGPDFRVLVRKSRKQAEQYHRLYKEPIP 106 (222)
Q Consensus 30 ~~G~t~vgi~~~dgvvla~d~~~~~-~l-~~~~~~~KI~~i-~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~i~ 106 (222)
.+|+|+|||+++||||||+|+|.+. .+ +.+++.+||++| ++|++++++|..+|++.+.++++.+++.|+ + ..
T Consensus 3 ~~GtTivgi~~~dgVvlaaD~r~t~g~~~i~~~~~~KI~~i~~~~i~~~~aG~~aD~~~l~~~~~~~~~~y~---g--~~ 77 (180)
T 2z3b_A 3 FHATTIFAVQHKGRSAMSGDGQVTFGQAVVMKHTARKVRKLFNGKVLAGFAGSVADAFTLFEKFEAKLEEYN---G--NL 77 (180)
T ss_dssp BCCCCEEEEEETTEEEEEECCCEEETTTEEEESCCCCEEEETTTTEEEEECSCHHHHHHHHHHHHHHHHHTT---T--CH
T ss_pred CCCeEEEEEEECCEEEEEECCCccCCCceEecCCCCcEEEECCCCEEEEeCchHHHHHHHHHHHHHHHHHhc---C--Ch
Confidence 5799999999999999999999987 67 889999999999 999999999999999999999999999877 3 22
Q ss_pred HHHHHHHHHHHHHHHhhcCceeeeeEeEEEEEEeCCCCeEEEECCCCceEe--eeeEEecCCcHHHHHHHHHhccC---C
Q 027541 107 VTQLVRETAAVMQEFTQSGGVRPFGVSLLVAGYDDKGPQLYQVDPSGSYFS--WKASAMGKNVSNAKTFLEKRYVE---E 181 (222)
Q Consensus 107 ~~~la~~l~~~~~~~~~~~~~rP~~~~~il~G~d~~g~~L~~id~~G~~~~--~~~~a~G~gs~~~~~~L~~~~~~---~ 181 (222)
++.+ +++.+.++++...|||++++|+| | ||+||.+||.|++.+ +++.|+|+|+++++++||+.|++ +
T Consensus 78 ~~~~----~~l~~~~~~~~~~rp~~~~~lva--d--~p~ly~~d~~G~~~~~~~~~~a~Gsgs~~a~~~le~~~~~~~~~ 149 (180)
T 2z3b_A 78 KRAA----VELAKEWRSDKVLRKLEAMLIVM--N--QDTLLLVSGTGEVIEPDDGILAIGSGGNYALAAGRALKKHAGES 149 (180)
T ss_dssp HHHH----HHHHHHHHHCTTGGGCCCCEEEE--C--SSCEEEECTTCCEECCSSSEEEESTTHHHHHHHHHHHHHHHGGG
T ss_pred HHHH----HHHHHHHHhhhCcCcceEEEEEE--c--CCeEEEECCCCcEEEeCCCEEEECCCHHHHHHHHHHhhhccCCC
Confidence 3333 33445555666789999999999 3 799999999999998 49999999999999999999998 9
Q ss_pred CCHHHHHHHHHHHHHhhhccCC-CCCcEEEEEE
Q 027541 182 MELDDAVHTAILTLKEGFEGQI-SEKNIEIGII 213 (222)
Q Consensus 182 ~~~~ea~~l~~~~L~~~~~~d~-~~~~iei~ii 213 (222)
|+.|| ++.+||+.+.++|. ++++++|.+|
T Consensus 150 mt~ee---l~~~al~~a~~rd~~sg~~i~v~~i 179 (180)
T 2z3b_A 150 MSASE---IARAALETAGEICVYTNDQIILEEL 179 (180)
T ss_dssp CCHHH---HHHHHHHHHHHHCTTCCSCCEEEEE
T ss_pred CCHHH---HHHHHHHHHHHhcCccCCeEEEEEE
Confidence 99999 47799999999995 9999999998
No 47
>1m4y_A ATP-dependent protease HSLV; N-terminal catalytic threonine residue, hydrolase; 2.10A {Thermotoga maritima} SCOP: d.153.1.4
Probab=100.00 E-value=2.4e-36 Score=236.57 Aligned_cols=165 Identities=16% Similarity=0.176 Sum_probs=145.8
Q ss_pred CcEEEEEeCCEEEEEEeecCCC-CcccCCccceEEEe-cCcEEEEEecChhhHHHHHHHHHHHHHHHHHHhCCCCCHHHH
Q 027541 33 QTSLGIKASNGVVIATEKKLPS-ILVDESSVHKIQSL-TPNIGVVYSGMGPDFRVLVRKSRKQAEQYHRLYKEPIPVTQL 110 (222)
Q Consensus 33 ~t~vgi~~~dgvvla~d~~~~~-~l~~~~~~~KI~~i-~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~i~~~~l 110 (222)
+|+|||+++||||||+|+|.++ .++.+++.+||++| ++|++++++|..+|++.+.++++.+++.|+.+ .++.+
T Consensus 1 tt~vgi~~~dgVvlaaD~r~~~g~~i~~~~~~Ki~~i~~~~i~~~~aG~~aD~~~l~~~~~~~~~~~~~~-----~~~~~ 75 (171)
T 1m4y_A 1 TTILVVRRNGQTVMGGDGQVTFGSTVLKGNARKVRKLGEGKVLAGFAGSVADAMTLFDRFEAKLREWGGN-----LTKAA 75 (171)
T ss_dssp CCEEEEEETTEEEEEECCCEEETTEEEESCCCCEEEETTTTEEEEEESCHHHHHHHHHHHHHHHHHTTTC-----HHHHH
T ss_pred CeEEEEEECCEEEEEECCCcccCCEEEeCCcceEEEeCCCCEEEEeCccHHHHHHHHHHHHHHHHHhccc-----HHHHH
Confidence 6899999999999999999986 68888999999999 99999999999999999999999999987743 24444
Q ss_pred HHHHHHHHHHHhhcCceeeeeEeEEEEEEeCCCCeEEEECCCCceEeee--eEEecCCcHHHHHHHHHhcc-CCCCHHHH
Q 027541 111 VRETAAVMQEFTQSGGVRPFGVSLLVAGYDDKGPQLYQVDPSGSYFSWK--ASAMGKNVSNAKTFLEKRYV-EEMELDDA 187 (222)
Q Consensus 111 a~~l~~~~~~~~~~~~~rP~~~~~il~G~d~~g~~L~~id~~G~~~~~~--~~a~G~gs~~~~~~L~~~~~-~~~~~~ea 187 (222)
++ +.+.++++...|||++++|++ | ||+||.+||.|++.+++ +.|+|+|++.++++||+.|+ ++|+.
T Consensus 76 ~~----l~~~~~~~~~~~~~~~~~lv~--D--~p~Ly~~d~~G~~~~~~~~~~a~Gsgs~~a~~~le~~~~~~~ms~--- 144 (171)
T 1m4y_A 76 VE----LAKDWRTDRVLRRLEALLLVA--D--KENIFIISGNGEVIQPDDDAAAIGSGGPYALAAAKALLRNTDLSA--- 144 (171)
T ss_dssp HH----HHHHHHHCTTGGGCCCEEEEE--C--SSCEEEECTTSCEECCSSSEEEESTTHHHHHHHHHHHHHHCCCCH---
T ss_pred HH----HHHHHHHhCCCCceEEEEEEE--c--CCEEEEECCCCCEEecCCCEEEECCcHHHHHHHHHHhcccCCCCH---
Confidence 44 344455555678899999998 5 89999999999999987 99999999999999999999 99997
Q ss_pred HHHHHHHHHhhhccCC-CCCcEEEEEE
Q 027541 188 VHTAILTLKEGFEGQI-SEKNIEIGII 213 (222)
Q Consensus 188 ~~l~~~~L~~~~~~d~-~~~~iei~ii 213 (222)
.+++++||+.+.+||. ++++++|.++
T Consensus 145 ~~l~~~al~~a~~rd~~sg~~i~v~~~ 171 (171)
T 1m4y_A 145 REIVEKAMTIAGEICIYTNQNIVIEEV 171 (171)
T ss_dssp HHHHHHHHHHHHHHCTTCCSCCEEEEC
T ss_pred HHHHHHHHHHHHHhCcccCCeEEEEEC
Confidence 6789999999999995 8999999864
No 48
>1g3k_A ATP-dependent protease HSLV; hydrolase; 1.90A {Haemophilus influenzae} SCOP: d.153.1.4 PDB: 1g3i_G 1jjw_A 1kyi_G* 1ofh_G* 1ofi_G* 1e94_A* 1g4a_B* 1g4b_M 1hqy_A* 1ht1_C* 1ht2_A* 1ned_A
Probab=100.00 E-value=5.6e-36 Score=235.12 Aligned_cols=166 Identities=13% Similarity=0.130 Sum_probs=145.7
Q ss_pred CcEEEEEeCCEEEEEEeecCCC-CcccCCccceEEEe-cCcEEEEEecChhhHHHHHHHHHHHHHHHHHHhCCCCCHHHH
Q 027541 33 QTSLGIKASNGVVIATEKKLPS-ILVDESSVHKIQSL-TPNIGVVYSGMGPDFRVLVRKSRKQAEQYHRLYKEPIPVTQL 110 (222)
Q Consensus 33 ~t~vgi~~~dgvvla~d~~~~~-~l~~~~~~~KI~~i-~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~i~~~~l 110 (222)
+|+|||+++||||||+|+|.++ .++.+++.+||++| ++|++++++|..+|++.+.++++.+++.|+. +....
T Consensus 1 tT~vgi~~~dgVvlaaD~r~t~g~~i~~~~~~Ki~~i~~~~i~~~~aG~~aD~~~l~~~~~~~~~~~~~------~~~~~ 74 (174)
T 1g3k_A 1 TTIVSVRRNGQVVVGGDGQVSLGNTVMKGNARKVRRLYNGKVLAGFAGGTADAFTLFELFERKLEMHQG------HLLKS 74 (174)
T ss_dssp CCEEEEEETTEEEEEECCCEEETTEEEESCCCCEEEETTTTEEEEEESCHHHHHHHHHHHHHHHHHTTT------CHHHH
T ss_pred CeEEEEEECCEEEEEECCCCccCCeeEeCCCCcEEEECCCCEEEEeCccHHHHHHHHHHHHHHHHHhcC------cHHHH
Confidence 6899999999999999999986 57888999999999 9999999999999999999999999998875 33333
Q ss_pred HHHHHHHHHHHhhcCceeeeeEeEEEEEEeCCCCeEEEECCCCceEeee---eEEecCCcHHHHHHHHHhcc-CCCCHHH
Q 027541 111 VRETAAVMQEFTQSGGVRPFGVSLLVAGYDDKGPQLYQVDPSGSYFSWK---ASAMGKNVSNAKTFLEKRYV-EEMELDD 186 (222)
Q Consensus 111 a~~l~~~~~~~~~~~~~rP~~~~~il~G~d~~g~~L~~id~~G~~~~~~---~~a~G~gs~~~~~~L~~~~~-~~~~~~e 186 (222)
+.. +.+.++++...||+ +.+++|+| ||+||.+||.|++.+++ +.|+|+|++.++++||+.|+ ++|+.+
T Consensus 75 ~~~---l~~~~~~~~~~r~~--~~~l~g~d--~p~Ly~~d~~G~~~~~~~~~~~a~Gsgs~~a~~~le~~~~~~~mt~~- 146 (174)
T 1g3k_A 75 AVE---LAKDWRTDRALRKL--EAMLIVAD--EKESLIITGIGDVVQPEEDQILAIGSGGNYALSAARALVENTELSAH- 146 (174)
T ss_dssp HHH---HHHHHHHSTTGGGC--CCEEEEEC--SSCEEEEETTTEEECCCTTCEEEESTTHHHHHHHHHHHHHHCCCCHH-
T ss_pred HHH---HHHHHHhccCcCcc--eEEEEEEC--CCEEEEEcCCCcEEecCCCcEEEEcccHHHHHHHHHHhcccCCCCHH-
Confidence 444 44445555557775 57777887 89999999999999988 99999999999999999999 999955
Q ss_pred HHHHHHHHHHhhhccCC-CCCcEEEEEEe
Q 027541 187 AVHTAILTLKEGFEGQI-SEKNIEIGIIG 214 (222)
Q Consensus 187 a~~l~~~~L~~~~~~d~-~~~~iei~ii~ 214 (222)
+++++||+.+.++|. ++++++|++|+
T Consensus 147 --~l~~~al~~a~~rd~~sg~~i~v~~i~ 173 (174)
T 1g3k_A 147 --EIVEKSLRIAGDICVFTNTNFTIEELP 173 (174)
T ss_dssp --HHHHHHHHHHHHHCTTCCSCCEEEEEC
T ss_pred --HHHHHHHHHHHHhccccCCceEEEEec
Confidence 799999999999995 89999999996
No 49
>2kwp_A Transcription elongation protein NUSA; NMR {Escherichia coli}
Probab=39.12 E-value=38 Score=24.11 Aligned_cols=51 Identities=10% Similarity=0.119 Sum_probs=37.4
Q ss_pred HHHHHHhcc-CCCCHHHHHHHHHHHHHhhhccCC-CCCcEEEEEEeeCCceEE
Q 027541 171 KTFLEKRYV-EEMELDDAVHTAILTLKEGFEGQI-SEKNIEIGIIGEKKEFRQ 221 (222)
Q Consensus 171 ~~~L~~~~~-~~~~~~ea~~l~~~~L~~~~~~d~-~~~~iei~ii~~~~~~~~ 221 (222)
...|+..-+ .+++.+..++.+..||..++++.. ...+++|.+=.+.|.+++
T Consensus 6 l~~l~~l~~EKgI~~e~v~eaie~AL~~A~kk~~g~~~~~~V~id~~tG~~~v 58 (129)
T 2kwp_A 6 LAVVEAVSNEKALPREKIFEALESALATATKKKYEQEIDVRVQIDRKSGDFDT 58 (129)
T ss_dssp HHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHCSCCCEEEEEETTTTEEEE
T ss_pred HHHHHHHHHHhCcCHHHHHHHHHHHHHHHHHHhcCCccceEEEEECCCCeEEE
Confidence 334444333 489999999999999999998765 567888876666777765
No 50
>3jx9_A Putative phosphoheptose isomerase; YP_001815198.1, structura genomics, joint center for structural genomics, JCSG; HET: MSE; 1.95A {Exiguobacterium sibiricum 255-15}
Probab=32.03 E-value=27 Score=26.16 Aligned_cols=31 Identities=10% Similarity=-0.050 Sum_probs=28.2
Q ss_pred ceeeCCCCcc-hhhhhHHHHhccCCcEEEEEe
Q 027541 10 LTTFSPSGKL-VQIEHALTAVGSGQTSLGIKA 40 (222)
Q Consensus 10 ~~~f~p~G~l-~q~eya~~a~~~G~t~vgi~~ 40 (222)
+-+|||.|+= .-+|.|+++-++|-++|||+.
T Consensus 81 vii~S~Sg~n~~~ie~A~~ake~G~~vIaITs 112 (170)
T 3jx9_A 81 VLIFTPDTERSDLLASLARYDAWHTPYSIITL 112 (170)
T ss_dssp EEEEESCSCCHHHHHHHHHHHHHTCCEEEEES
T ss_pred EEEEeCCCCCHHHHHHHHHHHHCCCcEEEEeC
Confidence 5579999988 589999999999999999998
No 51
>4eo3_A Bacterioferritin comigratory protein/NADH dehydro; thioredoxin-fold, alpha-beta-aplha sandwich fold, antioxidan oxidoreductase, FMN binding; HET: FMN; 1.65A {Thermotoga maritima}
Probab=31.76 E-value=17 Score=30.04 Aligned_cols=39 Identities=18% Similarity=0.340 Sum_probs=26.1
Q ss_pred CeEEEECCCCceEe-eeeEEecCCcHHHHHHHHHhccCCC
Q 027541 144 PQLYQVDPSGSYFS-WKASAMGKNVSNAKTFLEKRYVEEM 182 (222)
Q Consensus 144 ~~L~~id~~G~~~~-~~~~a~G~gs~~~~~~L~~~~~~~~ 182 (222)
|..|.||++|.+.. ++..-.+...+.+...|++.-.++|
T Consensus 103 r~tfiId~~G~i~~~~~~v~~~~h~~~~l~~~~~~~~~~~ 142 (322)
T 4eo3_A 103 RSTFLIDRWGFVRKEWRRVKVEGHVQEVKEALDRLIEEDL 142 (322)
T ss_dssp CEEEEECTTSBEEEEEESCCSTTHHHHHHHHHHHHHHHHT
T ss_pred cEEEEECCCCEEEEEEeCCCccccHHHHHHHHhhhchhhh
Confidence 78899999999975 3334455556777777766543333
No 52
>2kxe_A DNA polymerase II small subunit; D-family, archara, helical BU transferase; HET: DNA; NMR {Pyrococcus horikoshii}
Probab=30.96 E-value=56 Score=20.42 Aligned_cols=26 Identities=19% Similarity=0.184 Sum_probs=22.2
Q ss_pred HHHHHHHHHhccC-CCCHHHHHHHHHH
Q 027541 168 SNAKTFLEKRYVE-EMELDDAVHTAIL 193 (222)
Q Consensus 168 ~~~~~~L~~~~~~-~~~~~ea~~l~~~ 193 (222)
..|+-+|...|++ +.++-|.++.++.
T Consensus 20 PsAYyLL~~~ykkg~FsL~ELiKFAks 46 (75)
T 2kxe_A 20 PSAYYLLVGHFNEGKFSLIELIKFAKS 46 (75)
T ss_dssp HHHHHHHHHHHHTTSSCHHHHHHHHHH
T ss_pred chHHHHHHHHhhcccccHHHHHHHHHh
Confidence 5677889999988 9999999998864
No 53
>3hvz_A Uncharacterized protein; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium; 2.20A {Clostridium leptum}
Probab=30.39 E-value=25 Score=22.66 Aligned_cols=37 Identities=19% Similarity=0.397 Sum_probs=23.6
Q ss_pred CCCcceeeCCCCcchhhh-------hHHHH-hccCCcEEEEEeCC
Q 027541 6 YSFSLTTFSPSGKLVQIE-------HALTA-VGSGQTSLGIKASN 42 (222)
Q Consensus 6 ~d~~~~~f~p~G~l~q~e-------ya~~a-~~~G~t~vgi~~~d 42 (222)
|...+.+|.|+|.++.++ .|.+- ...|..++|.+.++
T Consensus 4 ~~~~i~v~tP~G~~~~lp~GaT~~D~A~~Ih~~lg~~~v~AkVNG 48 (78)
T 3hvz_A 4 APEEVFVFTPKGDVISLPIGSTVIDFAYAIHSAVGNRMIGAKVDG 48 (78)
T ss_dssp --CEEEEECTTSCEEEEETTCBHHHHHHHHCHHHHHTEEEEEETT
T ss_pred cCceEEEECCCCCEEEecCCCCHHHHHHHhhhhhhcceEEEEECC
Confidence 344578999999998766 33222 12466788887754
No 54
>3lvl_A NIFU-like protein; protein-protein complex, structural genomics, montreal-kings bacterial structural genomics initiative, BSGI; HET: PLP; 3.00A {Escherichia coli} PDB: 2l4x_A 2kqk_A 1q48_A 1r9p_A 1wfz_A
Probab=29.62 E-value=79 Score=22.29 Aligned_cols=51 Identities=20% Similarity=0.195 Sum_probs=38.8
Q ss_pred eEE-EECCCCceEeeeeEEecCCcHHHHHHHHHhccCCCCHHHHHHHHHHHH
Q 027541 145 QLY-QVDPSGSYFSWKASAMGKNVSNAKTFLEKRYVEEMELDDAVHTAILTL 195 (222)
Q Consensus 145 ~L~-~id~~G~~~~~~~~a~G~gs~~~~~~L~~~~~~~~~~~ea~~l~~~~L 195 (222)
.|| .+|++|.+.+..|...|.+...|-+-+-..+-.+.|++||.++...-+
T Consensus 43 ~l~l~v~~~~~I~d~~f~~~GCais~ASaS~~te~i~Gkt~~ea~~i~~~~i 94 (129)
T 3lvl_A 43 KLQIKVNDEGIIEDARFKTYGCGSAIASSSLVTEWVKGKSLDEAQAIKNTDI 94 (129)
T ss_dssp EEEEEECSSSCEEEEEEEEESCHHHHHHHHHHHHHHTTCCHHHHHTCCHHHH
T ss_pred EEEEEECCCCeEEEEEEEecCCHHHHHHHHHHHHHHcCCcHHHHHHHHHHHH
Confidence 444 567668888899999998887777766666778899999988765433
No 55
>2z7e_A ISCU protein, NIFU-like protein; iron-sulfur cluster, iron, biosynthesis, [2Fe-2S], asymmetric trimer, three conserved Cys; 2.30A {Aquifex aeolicus}
Probab=29.59 E-value=1e+02 Score=22.60 Aligned_cols=53 Identities=9% Similarity=0.028 Sum_probs=41.5
Q ss_pred CeEE-EEC-CCCceEeeeeEEecCCcHHHHHHHHHhccCCCCHHHHHHHHHHHHH
Q 027541 144 PQLY-QVD-PSGSYFSWKASAMGKNVSNAKTFLEKRYVEEMELDDAVHTAILTLK 196 (222)
Q Consensus 144 ~~L~-~id-~~G~~~~~~~~a~G~gs~~~~~~L~~~~~~~~~~~ea~~l~~~~L~ 196 (222)
-.|+ .+| .+|.+.+..|-..|.+...|-+-+-..+-.+.|++||.++..+.+.
T Consensus 40 i~l~lkvd~~~g~I~d~~F~~~GCais~ASaS~mte~v~Gkt~~EA~~i~~~~i~ 94 (157)
T 2z7e_A 40 MLFTIKVNPENDVIEDVRFKTFGCGSAIAVSSMLTEMVKGKPIQYALNLTYKDIF 94 (157)
T ss_dssp EEEEEEECTTTCBEEEEEEEEESCTTHHHHHHHHHHHHTTSBHHHHHHCCHHHHH
T ss_pred EEEEEEEecCCCeEEEEEEEecCCHHHHHHHHHHHHHHcCCcHHHHHHHHhccHH
Confidence 4455 467 5688888999999999888887777778889999999988665443
No 56
>3fpw_A HBPS, extracellular HAEM-binding protein; heme binding protein; 1.60A {Streptomyces reticuli} PDB: 3fpv_A
Probab=29.22 E-value=80 Score=24.11 Aligned_cols=37 Identities=8% Similarity=0.268 Sum_probs=31.4
Q ss_pred cCCCCHHHHHHHHHHHHHhhhccCCCCCcEEEEEEeeCCc
Q 027541 179 VEEMELDDAVHTAILTLKEGFEGQISEKNIEIGIIGEKKE 218 (222)
Q Consensus 179 ~~~~~~~ea~~l~~~~L~~~~~~d~~~~~iei~ii~~~~~ 218 (222)
.+.+++++|.+++..++.++.++ +..+-|.|+|..|.
T Consensus 62 ~~~ltl~~A~~l~~aA~~~A~~~---g~pV~IaVvD~~G~ 98 (192)
T 3fpw_A 62 STHLTLEAATKAARAAVEAAEKD---GRHVSVAVVDRNGN 98 (192)
T ss_dssp CCCCCHHHHHHHHHHHHHHHHHT---TCCCEEEEEETTSC
T ss_pred cCCCCHHHHHHHHHHHHHHHHhc---CCCEEEEEEeCCCC
Confidence 46799999999999999998875 34788999998875
No 57
>1apy_B Aspartylglucosaminidase; glycosylasparaginase, hydrolase; HET: NAG BMA; 2.00A {Homo sapiens} SCOP: d.153.1.5 PDB: 1apz_B*
Probab=28.47 E-value=88 Score=22.63 Aligned_cols=57 Identities=12% Similarity=0.009 Sum_probs=34.6
Q ss_pred eeEEecCCcHHHHHHHHH----hccCCCCHHHHHHHHHHHHHhhhccCCCCCcEEEEEEeeCCce
Q 027541 159 KASAMGKNVSNAKTFLEK----RYVEEMELDDAVHTAILTLKEGFEGQISEKNIEIGIIGEKKEF 219 (222)
Q Consensus 159 ~~~a~G~gs~~~~~~L~~----~~~~~~~~~ea~~l~~~~L~~~~~~d~~~~~iei~ii~~~~~~ 219 (222)
-.+++|.|..+++..+.. ..+..++.+||.+.+++-+..... ...--+-.++++|.+
T Consensus 48 a~s~TG~GE~iiR~~~A~~iv~~m~~G~~~~~A~~~~i~~~~~~~~----~~~ggvIa~d~~G~~ 108 (141)
T 1apy_B 48 AAAATGNGDILMRFLPSYQAVEYMRRGEDPTIACQKVISRIQKHFP----EFFGAVICANVTGSY 108 (141)
T ss_dssp EEEEEECHHHHGGGCHHHHHHHHHHTTCCHHHHHHHHHHHHHHHCT----TCCEEEEEEETTSCE
T ss_pred EEEeecChHHHHHHhHHHHHHHHHHcCCCHHHHHHHHHHHHHHhcC----CCcEEEEEEeCCCCE
Confidence 567789988766555544 234689999998887765544221 112244555666653
No 58
>2yxo_A Histidinol phosphatase; metal-dependent, hydrolase; 1.60A {Thermus thermophilus} PDB: 2yz5_A 2z4g_A
Probab=28.33 E-value=33 Score=26.80 Aligned_cols=32 Identities=9% Similarity=-0.044 Sum_probs=27.2
Q ss_pred eeeCCCCcchhhhhHHHHhccCCcEEEEEeCC
Q 027541 11 TTFSPSGKLVQIEHALTAVGSGQTSLGIKASN 42 (222)
Q Consensus 11 ~~f~p~G~l~q~eya~~a~~~G~t~vgi~~~d 42 (222)
|.||++|...--|++.+|.+.|=+.||++-.+
T Consensus 8 t~~S~DG~~~~ee~v~~A~~~Gl~~iaiTDH~ 39 (267)
T 2yxo_A 8 TPLCGHAEGHPEAYLEEARAKGLKGVVFTDHS 39 (267)
T ss_dssp CGGGSSCCSCHHHHHHHHHHTTCSEEEEEEEC
T ss_pred cCCCCCCCCCHHHHHHHHHHcCCCEEEEcCCC
Confidence 46888999877799999999999999987643
No 59
>2a2l_A Unknown; structural genomics, PSI, protein structure initiat YORK SGX research center for structural genomics, NYSGXRC, function; 2.20A {Klebsiella pneumoniae} SCOP: d.110.9.1
Probab=26.66 E-value=54 Score=23.70 Aligned_cols=36 Identities=14% Similarity=0.143 Sum_probs=30.1
Q ss_pred CCCCHHHHHHHHHHHHHhhhccCCCCCcEEEEEEeeCCc
Q 027541 180 EEMELDDAVHTAILTLKEGFEGQISEKNIEIGIIGEKKE 218 (222)
Q Consensus 180 ~~~~~~ea~~l~~~~L~~~~~~d~~~~~iei~ii~~~~~ 218 (222)
+.+++++|.+++..++..+.++ +..+-|.|++..|.
T Consensus 10 ~~lt~~~A~~l~~aa~~~A~~~---g~~v~IaVvD~~G~ 45 (145)
T 2a2l_A 10 QTITLAAAQQMAAAVEKKATEI---NVAVVFSVVDRGGN 45 (145)
T ss_dssp EEECHHHHHHHHHHHHHHHHHT---TCCCEEEEEETTSC
T ss_pred cCCCHHHHHHHHHHHHHHHHHc---CCCEEEEEEECCCC
Confidence 4589999999999999988774 44788999998775
No 60
>4gdv_A L-asparaginase; NTN enzyme, homodimer, hydrolase, L-asparagine; 1.75A {Homo sapiens} PDB: 4gdu_A 4gdt_A 4gdw_A
Probab=23.79 E-value=1.7e+02 Score=24.11 Aligned_cols=63 Identities=16% Similarity=0.209 Sum_probs=39.6
Q ss_pred CCceEee---eeEEecCCcHHHHHHHHHhc----cCCCCHHHHHHHHHHHHHhhhccCCCCCcEEEEEEeeCCce
Q 027541 152 SGSYFSW---KASAMGKNVSNAKTFLEKRY----VEEMELDDAVHTAILTLKEGFEGQISEKNIEIGIIGEKKEF 219 (222)
Q Consensus 152 ~G~~~~~---~~~a~G~gs~~~~~~L~~~~----~~~~~~~ea~~l~~~~L~~~~~~d~~~~~iei~ii~~~~~~ 219 (222)
.|.+.+. -.+++|.|..+++..+.... +..++++||.+.++.-+...... ..=+-.|+++|++
T Consensus 207 aG~yAdn~~gavs~TG~GE~iir~~~A~~i~~~m~~G~s~~eA~~~~i~~~~~~~~g-----~gG~Iavd~~G~~ 276 (310)
T 4gdv_A 207 AGGYADNDIGAVSTTGHGESILKVNLARLTLFHIEQGKTVEEAADLSLGYMKSRVKG-----LGGLIVVSKTGDW 276 (310)
T ss_dssp TTEEEETTTEEEEEEECHHHHHHHTHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHCC-----CEEEEEEETTSCE
T ss_pred ceeEecCCcEEEEeecCcHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHhcCC-----cEEEEEEeCCCCE
Confidence 4445432 35679999988887666533 56899999998887766543331 1223345666643
No 61
>1su0_B NIFU like protein ISCU; structural genomics, BSGC structure funded by NI protein structure initiative, PSI; 2.30A {Streptococcus pyogenes} SCOP: d.224.1.2
Probab=22.45 E-value=2.3e+02 Score=20.65 Aligned_cols=52 Identities=15% Similarity=0.062 Sum_probs=40.5
Q ss_pred CeEE-EECCCCceEeeeeEEecCCcHHHHHHHHHhccCCCCHHHHHHHHHHHHH
Q 027541 144 PQLY-QVDPSGSYFSWKASAMGKNVSNAKTFLEKRYVEEMELDDAVHTAILTLK 196 (222)
Q Consensus 144 ~~L~-~id~~G~~~~~~~~a~G~gs~~~~~~L~~~~~~~~~~~ea~~l~~~~L~ 196 (222)
-.|| .+| +|.+.+..|...|.+...|-+-+-..+-.+.|++||.++...-..
T Consensus 44 i~l~lkv~-~g~I~d~~F~~~GCais~ASaS~mte~v~Gkt~~Ea~~i~~~f~~ 96 (159)
T 1su0_B 44 ISLTVKFD-EDKIEDIAFAGNGCTISTASSSMMTDAVIGKSKEEALALADIFSE 96 (159)
T ss_dssp EEEEEEES-SSSEEEEEEEEECCHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHH
T ss_pred EEEEEEEC-CCEEEEEEEEecCCHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHH
Confidence 4455 356 588888999999988888877777778889999999988776443
No 62
>3rj2_X ORF158L protein, putative uncharacterized protein; histone 3, protein binding; 2.20A {Singapore grouper iridovirus}
Probab=22.37 E-value=22 Score=24.99 Aligned_cols=17 Identities=18% Similarity=0.411 Sum_probs=12.8
Q ss_pred CCCCcceeeCCCCcchh
Q 027541 5 QYSFSLTTFSPSGKLVQ 21 (222)
Q Consensus 5 ~~d~~~~~f~p~G~l~q 21 (222)
+-|..+|.|+|.||+.-
T Consensus 54 gm~h~vTfF~~~Grl~~ 70 (138)
T 3rj2_X 54 FMRHRVTFFNATGRYIT 70 (138)
T ss_dssp TCEEEEEEECTTSCEEE
T ss_pred cceeEEEEEcCCCcEEE
Confidence 34567889999998743
No 63
>1xjs_A NIFU-like protein; SR17, structure, autostructure, iron-sulfur, zinc, northeast structural genomics consortium, NESG; NMR {Bacillus subtilis} SCOP: d.224.1.2 PDB: 2azh_A
Probab=20.19 E-value=2e+02 Score=20.64 Aligned_cols=52 Identities=13% Similarity=0.109 Sum_probs=40.2
Q ss_pred CeEEE-ECCCCceEeeeeEEecCCcHHHHHHHHHhccCCCCHHHHHHHHHHHHH
Q 027541 144 PQLYQ-VDPSGSYFSWKASAMGKNVSNAKTFLEKRYVEEMELDDAVHTAILTLK 196 (222)
Q Consensus 144 ~~L~~-id~~G~~~~~~~~a~G~gs~~~~~~L~~~~~~~~~~~ea~~l~~~~L~ 196 (222)
-.|+. +| +|.+.+..|...|.+...|-+-+-..+-.+.|++||.++...-..
T Consensus 45 i~l~lkv~-~~~I~d~~f~~~GCais~ASaS~mte~v~Gkt~~Ea~~i~~~~~~ 97 (147)
T 1xjs_A 45 IRLTMKLD-GDIVEDAKFEGEGCSISMASASMMTQAIKGKDIETALSMSKIFSD 97 (147)
T ss_dssp EEEEEECC-SSBCCEEEEEEESSHHHHHHHHHHHHHHTTSBHHHHHHHHHHHHH
T ss_pred EEEEEEEC-CCeEEEEEEEecCCHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHH
Confidence 44553 45 588888999999988888777777778889999999998776443
Done!