BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 027545
(222 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q09463|RNF5_CAEEL RING finger protein 5 OS=Caenorhabditis elegans GN=rnf-5 PE=1 SV=1
Length = 235
Score = 121 bits (304), Expect = 4e-27, Method: Compositional matrix adjust.
Identities = 85/248 (34%), Positives = 115/248 (46%), Gaps = 47/248 (18%)
Query: 6 AESTSVPSQNPSCVGNSANDAGGFECNICFELAQDPIVTLCGHLFCWPCLYRWLHHHSHS 65
A T PS+ P+ N +++ FECNIC + A+D +V+LCGHLFCWPCL +WL ++
Sbjct: 2 ASETKAPSEEPTSSSNK-DESARFECNICLDAAKDAVVSLCGHLFCWPCLSQWLDTRPNN 60
Query: 66 QECPVCKAVVQEEKLVPLYGRGKTQTDPRSKSYPGIDIPSRPAGQRPETAPPPEA----- 120
Q CPVCK+ + K+VP+YGRG +DPR K +P RP GQR E PPP++
Sbjct: 61 QVCPVCKSAIDGNKVVPIYGRGGDSSDPRKK------VPPRPKGQRSE--PPPQSFAGFN 112
Query: 121 ---------SYFPNL----GFGLMGGFMPMATARIGNFTMGF-AGLFPSLFNIQFHGFPD 166
PN+ G G + G P+ F + F G+FP F F G +
Sbjct: 113 WGGDGGMMGGGGPNVHFSFGIGTVNGLFPLM------FMLPFIQGIFPLSFVASFFGNGN 166
Query: 167 ATVYGTTSGFPNGFSAFHG-------------GHVHGFPQPSRGQQADNVLKNLLLLIGL 213
G G G GH SR Q + L N+ IG
Sbjct: 167 QGAAAAGGGNGGGNDGNDGTHAHTHGHTHGPRGHGESAAPGSRMAQEEEYLSNIFKYIGF 226
Query: 214 FVILALLF 221
F++ LLF
Sbjct: 227 FMLFWLLF 234
>sp|Q91YT2|RN185_MOUSE E3 ubiquitin-protein ligase RNF185 OS=Mus musculus GN=Rnf185 PE=2
SV=1
Length = 192
Score = 117 bits (292), Expect = 8e-26, Method: Compositional matrix adjust.
Identities = 56/115 (48%), Positives = 74/115 (64%), Gaps = 9/115 (7%)
Query: 2 ASGFAESTSV--PSQNPSCVGNSANDAGGFECNICFELAQDPIVTLCGHLFCWPCLYRWL 59
AS E+++ PS + + G S FECNIC + A+D +++LCGHLFCWPCL++WL
Sbjct: 8 ASASTENSNAGGPSGSSNGTGESGGQDSTFECNICLDTAKDAVISLCGHLFCWPCLHQWL 67
Query: 60 HHHSHSQECPVCKAVVQEEKLVPLYGRGKT-QTDPRSKSYPGIDIPSRPAGQRPE 113
+ Q CPVCKA + +K++PLYGRG T Q DPR K+ P RP GQRPE
Sbjct: 68 ETRPNRQVCPVCKAGISRDKVIPLYGRGSTGQQDPREKT------PPRPQGQRPE 116
>sp|Q5ZIR9|RN185_CHICK E3 ubiquitin-protein ligase RNF185 OS=Gallus gallus GN=RNF185 PE=2
SV=1
Length = 194
Score = 116 bits (291), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 51/96 (53%), Positives = 66/96 (68%), Gaps = 7/96 (7%)
Query: 19 VGNSANDAGGFECNICFELAQDPIVTLCGHLFCWPCLYRWLHHHSHSQECPVCKAVVQEE 78
G++ N FECNIC + A+D +++LCGHLFCWPCL++WL + Q CPVCKA + +
Sbjct: 29 AGDNTNQDNTFECNICLDTAKDAVISLCGHLFCWPCLHQWLETRPNRQVCPVCKAGISRD 88
Query: 79 KLVPLYGRGKT-QTDPRSKSYPGIDIPSRPAGQRPE 113
K++PLYGRG T Q DPR K+ P RP GQRPE
Sbjct: 89 KVIPLYGRGSTGQQDPREKT------PPRPQGQRPE 118
>sp|Q99942|RNF5_HUMAN E3 ubiquitin-protein ligase RNF5 OS=Homo sapiens GN=RNF5 PE=1 SV=1
Length = 180
Score = 112 bits (281), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 63/131 (48%), Positives = 80/131 (61%), Gaps = 17/131 (12%)
Query: 29 FECNICFELAQDPIVTLCGHLFCWPCLYRWLHHHSHSQECPVCKAVVQEEKLVPLYGRGK 88
FECNIC E A++ +V++CGHL+CWPCL++WL QECPVCKA + EK+VPLYGRG
Sbjct: 25 FECNICLETAREAVVSVCGHLYCWPCLHQWLETRPERQECPVCKAGISREKVVPLYGRGS 84
Query: 89 TQ-TDPRSKSYPGIDIPSRPAGQRPETAPPPEASYFPNLGFGLMGGFMPMATARIGNFTM 147
+ DPR K+ P RP GQRP AP + P FG GGF + +G F
Sbjct: 85 QKPQDPRLKT------PPRPQGQRP--APESRGGFQP---FGDTGGF--HFSFGVGAFPF 131
Query: 148 GFAGLFPSLFN 158
GF F ++FN
Sbjct: 132 GF---FTTVFN 139
>sp|Q568Y3|RN185_RAT E3 ubiquitin-protein ligase RNF185 OS=Rattus norvegicus GN=Rnf185
PE=2 SV=1
Length = 192
Score = 112 bits (280), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 50/94 (53%), Positives = 63/94 (67%), Gaps = 7/94 (7%)
Query: 21 NSANDAGGFECNICFELAQDPIVTLCGHLFCWPCLYRWLHHHSHSQECPVCKAVVQEEKL 80
S FECNIC + A+D +++LCGHLFCWPCL++WL + Q CPVCKA + +K+
Sbjct: 29 ESGGQDSTFECNICLDTAKDAVISLCGHLFCWPCLHQWLETRPNRQVCPVCKAGISRDKV 88
Query: 81 VPLYGRGKT-QTDPRSKSYPGIDIPSRPAGQRPE 113
+PLYGRG T Q DPR K+ P RP GQRPE
Sbjct: 89 IPLYGRGSTGQQDPREKT------PPRPQGQRPE 116
>sp|Q96GF1|RN185_HUMAN E3 ubiquitin-protein ligase RNF185 OS=Homo sapiens GN=RNF185 PE=1
SV=1
Length = 192
Score = 112 bits (280), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 50/94 (53%), Positives = 63/94 (67%), Gaps = 7/94 (7%)
Query: 21 NSANDAGGFECNICFELAQDPIVTLCGHLFCWPCLYRWLHHHSHSQECPVCKAVVQEEKL 80
S FECNIC + A+D +++LCGHLFCWPCL++WL + Q CPVCKA + +K+
Sbjct: 29 ESGGQDSTFECNICLDTAKDAVISLCGHLFCWPCLHQWLETRPNRQVCPVCKAGISRDKV 88
Query: 81 VPLYGRGKT-QTDPRSKSYPGIDIPSRPAGQRPE 113
+PLYGRG T Q DPR K+ P RP GQRPE
Sbjct: 89 IPLYGRGSTGQQDPREKT------PPRPQGQRPE 116
>sp|Q5M807|RNF5_RAT E3 ubiquitin-protein ligase RNF5 OS=Rattus norvegicus GN=Rnf5 PE=2
SV=1
Length = 180
Score = 112 bits (280), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 63/131 (48%), Positives = 80/131 (61%), Gaps = 17/131 (12%)
Query: 29 FECNICFELAQDPIVTLCGHLFCWPCLYRWLHHHSHSQECPVCKAVVQEEKLVPLYGRGK 88
FECNIC E A++ +V++CGHL+CWPCL++WL QECPVCKA + EK+VPLYGRG
Sbjct: 25 FECNICLETAREAVVSVCGHLYCWPCLHQWLETRPDRQECPVCKAGISREKVVPLYGRGS 84
Query: 89 TQ-TDPRSKSYPGIDIPSRPAGQRPETAPPPEASYFPNLGFGLMGGFMPMATARIGNFTM 147
+ DPR K+ P RP GQRP AP + P FG GGF + +G F
Sbjct: 85 QKPQDPRLKT------PPRPQGQRP--APESRGGFQP---FGDAGGF--HFSFGVGAFPF 131
Query: 148 GFAGLFPSLFN 158
GF F ++FN
Sbjct: 132 GF---FTTVFN 139
>sp|O35445|RNF5_MOUSE E3 ubiquitin-protein ligase RNF5 OS=Mus musculus GN=Rnf5 PE=1 SV=1
Length = 180
Score = 112 bits (280), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 63/131 (48%), Positives = 80/131 (61%), Gaps = 17/131 (12%)
Query: 29 FECNICFELAQDPIVTLCGHLFCWPCLYRWLHHHSHSQECPVCKAVVQEEKLVPLYGRGK 88
FECNIC E A++ +V++CGHL+CWPCL++WL QECPVCKA + EK+VPLYGRG
Sbjct: 25 FECNICLETAREAVVSVCGHLYCWPCLHQWLETRPDRQECPVCKAGISREKVVPLYGRGS 84
Query: 89 TQ-TDPRSKSYPGIDIPSRPAGQRPETAPPPEASYFPNLGFGLMGGFMPMATARIGNFTM 147
+ DPR K+ P RP GQRP AP + P FG GGF + +G F
Sbjct: 85 QKPQDPRLKT------PPRPQGQRP--APESRGGFQP---FGDAGGF--HFSFGVGAFPF 131
Query: 148 GFAGLFPSLFN 158
GF F ++FN
Sbjct: 132 GF---FTTVFN 139
>sp|Q5RFK9|RN185_PONAB E3 ubiquitin-protein ligase RNF185 OS=Pongo abelii GN=RNF185 PE=2
SV=1
Length = 192
Score = 112 bits (279), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 50/94 (53%), Positives = 63/94 (67%), Gaps = 7/94 (7%)
Query: 21 NSANDAGGFECNICFELAQDPIVTLCGHLFCWPCLYRWLHHHSHSQECPVCKAVVQEEKL 80
S FECNIC + A+D +++LCGHLFCWPCL++WL + Q CPVCKA + +K+
Sbjct: 29 ESGGQDSTFECNICLDTAKDAVISLCGHLFCWPCLHQWLETRPNRQVCPVCKAGISRDKV 88
Query: 81 VPLYGRGKT-QTDPRSKSYPGIDIPSRPAGQRPE 113
+PLYGRG T Q DPR K+ P RP GQRPE
Sbjct: 89 IPLYGRGSTGQQDPREKT------PPRPQGQRPE 116
>sp|Q6PC78|RN185_DANRE E3 ubiquitin-protein ligase RNF185 OS=Danio rerio GN=rnf185 PE=2
SV=1
Length = 194
Score = 110 bits (274), Expect = 9e-24, Method: Compositional matrix adjust.
Identities = 48/86 (55%), Positives = 62/86 (72%), Gaps = 7/86 (8%)
Query: 29 FECNICFELAQDPIVTLCGHLFCWPCLYRWLHHHSHSQECPVCKAVVQEEKLVPLYGRGK 88
FECNIC + ++D +++LCGHLFCWPCL++WL + Q CPVCKA + +K++PLYGRG
Sbjct: 39 FECNICLDTSKDAVISLCGHLFCWPCLHQWLETRPNRQVCPVCKAGISRDKVIPLYGRGS 98
Query: 89 T-QTDPRSKSYPGIDIPSRPAGQRPE 113
T Q DPR K+ P RP GQRPE
Sbjct: 99 TGQQDPREKT------PPRPQGQRPE 118
>sp|Q6R567|RMA1_CAPAN E3 ubiquitin-protein ligase RMA1H1 OS=Capsicum annuum GN=RMA1H1
PE=1 SV=1
Length = 252
Score = 107 bits (267), Expect = 7e-23, Method: Compositional matrix adjust.
Identities = 49/98 (50%), Positives = 62/98 (63%), Gaps = 10/98 (10%)
Query: 24 NDAGGFECNICFELAQDPIVTLCGHLFCWPCLYRWLHHHSHSQE--------CPVCKAVV 75
N +GGF+CNIC + +P++TLCGHL+CWPC+Y+W++ S S E CPVCKA V
Sbjct: 34 NISGGFDCNICLDCVHEPVITLCGHLYCWPCIYKWIYFQSVSSENSDQQQPQCPVCKAEV 93
Query: 76 QEEKLVPLYGRGKTQTDPRSKSYP--GIDIPSRPAGQR 111
E+ L+PLYGRG T P P GI IP RP R
Sbjct: 94 SEKTLIPLYGRGGQSTKPSEGKAPNLGIVIPQRPPSPR 131
>sp|Q8GUK7|RMA3_ARATH E3 ubiquitin-protein ligase RMA3 OS=Arabidopsis thaliana GN=RMA3
PE=1 SV=1
Length = 243
Score = 105 bits (262), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 47/97 (48%), Positives = 59/97 (60%), Gaps = 11/97 (11%)
Query: 23 ANDAGGFECNICFELAQDPIVTLCGHLFCWPCLYRWLHHH-------SHSQECPVCKAVV 75
AN++G F+CNIC + A DP+VTLCGHLFCWPC+Y+WLH H CPVCK+ +
Sbjct: 36 ANESGCFDCNICLDTAHDPVVTLCGHLFCWPCIYKWLHVQLSSVSVDQHQNNCPVCKSNI 95
Query: 76 QEEKLVPLYGRGKTQTD----PRSKSYPGIDIPSRPA 108
LVPLYGRG + + + DIP RPA
Sbjct: 96 TITSLVPLYGRGMSSPSSTFGSKKQDALSTDIPRRPA 132
>sp|O64425|RMA1_ARATH E3 ubiquitin-protein ligase RMA1 OS=Arabidopsis thaliana GN=RMA1
PE=1 SV=1
Length = 249
Score = 101 bits (252), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 73/234 (31%), Positives = 103/234 (44%), Gaps = 36/234 (15%)
Query: 8 STSVPSQNPSCVGNSANDAGGFECNICFELAQDPIVTLCGHLFCWPCLYRWLHHHSHS-- 65
+ SVPS + D F+CNIC + Q+P+VTLCGHLFCWPC+++WL S S
Sbjct: 33 TVSVPSDD--------TDDSNFDCNICLDSVQEPVVTLCGHLFCWPCIHKWLDVQSFSTS 84
Query: 66 ------QECPVCKAVVQEEKLVPLYGRGKTQTDPRSKSYPGIDIPSRPAG--QRPETAPP 117
++CPVCK+ V LVPLYGRG+ T K+ +P RP G R E
Sbjct: 85 DEYQRHRQCPVCKSKVSHSTLVPLYGRGRCTTQEEGKN----SVPKRPVGPVYRLEMPNS 140
Query: 118 PEASYFPNLGFGL-----MGGFMPMATARIGNFTMGFAGLFPSLFNIQFHGFPDATVYGT 172
P AS L + G+ P++ N A L P + + ++GT
Sbjct: 141 PYASTDLRLSQRVHFNSPQEGYYPVSGVMSSNSLSYSAVLDPVM--VMVGEMVATRLFGT 198
Query: 173 TS----GFPNGFSAFHGGHVHGFPQPSRGQQADNVLKNLLLLIGLFVILALLFW 222
+P+ ++ G R QAD L + V+L LL +
Sbjct: 199 RVMDRFAYPDTYNL---AGTSGPRMRRRIMQADKSLGRIFFFFMCCVVLCLLLF 249
>sp|P93030|RMA2_ARATH E3 ubiquitin-protein ligase RMA2 OS=Arabidopsis thaliana GN=RMA2
PE=1 SV=1
Length = 193
Score = 95.9 bits (237), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 46/100 (46%), Positives = 62/100 (62%), Gaps = 19/100 (19%)
Query: 23 ANDAGGFECNICFELAQDPIVTLCGHLFCWPCLYRW----------LHHHSHSQE---CP 69
+ G F+CNIC + +DP+VTLCGHLFCWPC+++W + + H +E CP
Sbjct: 13 VDSGGDFDCNICLDQVRDPVVTLCGHLFCWPCIHKWTYASNNSRQRVDQYDHKREPPKCP 72
Query: 70 VCKAVVQEEKLVPLYGRGKTQTDPRSKSYPGIDIPSRPAG 109
VCK+ V E LVP+YGRG Q P+S G ++PSRP G
Sbjct: 73 VCKSDVSEATLVPIYGRG--QKAPQS----GSNVPSRPTG 106
>sp|Q00940|PEX10_PICAN Peroxisome biogenesis factor 10 OS=Pichia angusta GN=PEX10 PE=3
SV=1
Length = 295
Score = 56.6 bits (135), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 22/53 (41%), Positives = 33/53 (62%), Gaps = 3/53 (5%)
Query: 31 CNICFELAQDPIVTLCGHLFCWPCLYRWLHHHSHSQECPVCKAVVQEEKLVPL 83
C +C +DP CGH+FCW C+ W+ QECP+C+A ++E +L+PL
Sbjct: 245 CMLCLSPMKDPSCGECGHVFCWKCVLDWVKER---QECPLCRAKMRESQLLPL 294
>sp|Q9SYU4|PEX10_ARATH Peroxisome biogenesis factor 10 OS=Arabidopsis thaliana GN=PEX10
PE=1 SV=1
Length = 381
Score = 55.8 bits (133), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 26/70 (37%), Positives = 37/70 (52%), Gaps = 4/70 (5%)
Query: 15 NPSCVGNSANDAGGFECNICFELAQDPIVTLCGHLFCWPCLYRWLHHHSHSQECPVCKAV 74
N S +++ +A G +C +C Q P T CGH+FCW C+ W + QECP+C+
Sbjct: 312 NWSTSDSTSTEAVG-KCTLCLSTRQHPTATPCGHVFCWSCIMEWCN---EKQECPLCRTP 367
Query: 75 VQEEKLVPLY 84
LV LY
Sbjct: 368 NTHSSLVCLY 377
>sp|Q9D4H7|LONF3_MOUSE LON peptidase N-terminal domain and RING finger protein 3 OS=Mus
musculus GN=Lonrf3 PE=2 SV=1
Length = 753
Score = 55.5 bits (132), Expect = 3e-07, Method: Composition-based stats.
Identities = 23/51 (45%), Positives = 32/51 (62%), Gaps = 3/51 (5%)
Query: 25 DAGGFECNICFELAQDPIVTLCGHLFCWPCLYRWLHHHSHSQECPVCKAVV 75
DA EC++C L +P+ T CGH FC CL R L H++ +CP+CK V+
Sbjct: 455 DASDLECSLCMRLFYEPVTTPCGHTFCLKCLERCLDHNA---KCPLCKDVL 502
Score = 40.8 bits (94), Expect = 0.007, Method: Composition-based stats.
Identities = 30/105 (28%), Positives = 40/105 (38%), Gaps = 19/105 (18%)
Query: 7 ESTSVPSQNPSCVGNSANDAG-----------GFECNICFELAQDPIVTLCGHLFCWPCL 55
E S S SC + +AG GF+C C DP+ CGH FC CL
Sbjct: 124 ELASDSSGTSSCCAAALKEAGEAAAVAPEVWDGFKCKKCHGFLSDPVSLWCGHTFCKLCL 183
Query: 56 YRWLHHHSHSQECPVCKAVVQEEKLVPLYGRGKTQTDPRSKSYPG 100
R + + C +C V+ L+ GR + PR P
Sbjct: 184 ER---GRAADRRCALCG--VKLSALMAASGRAR---GPRRAGQPA 220
>sp|Q54S31|PEX10_DICDI Peroxisome biogenesis factor 10 OS=Dictyostelium discoideum
GN=pex10 PE=3 SV=2
Length = 374
Score = 55.5 bits (132), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 21/56 (37%), Positives = 32/56 (57%), Gaps = 3/56 (5%)
Query: 30 ECNICFELAQDPIVTLCGHLFCWPCLYRWLHHHSHSQECPVCKAVVQEEKLVPLYG 85
+C +C E+ T+CGHLFCW C+ W ++ ++CPVC+ + VPLY
Sbjct: 321 KCTLCLEVRTHTTATICGHLFCWHCITEWC---NNKEQCPVCRCPISIRTCVPLYN 373
>sp|Q1L5Z9|LONF2_HUMAN LON peptidase N-terminal domain and RING finger protein 2 OS=Homo
sapiens GN=LONRF2 PE=2 SV=3
Length = 754
Score = 54.7 bits (130), Expect = 5e-07, Method: Composition-based stats.
Identities = 24/53 (45%), Positives = 29/53 (54%), Gaps = 3/53 (5%)
Query: 25 DAGGFECNICFELAQDPIVTLCGHLFCWPCLYRWLHHHSHSQECPVCKAVVQE 77
D FEC +C L +P+ T CGH FC CL R L H H CP+CK + E
Sbjct: 443 DVTDFECALCMRLLFEPVTTPCGHTFCLKCLERCLDHAPH---CPLCKDKLSE 492
>sp|Q17RB8|LONF1_HUMAN LON peptidase N-terminal domain and RING finger protein 1 OS=Homo
sapiens GN=LONRF1 PE=2 SV=2
Length = 773
Score = 53.1 bits (126), Expect = 1e-06, Method: Composition-based stats.
Identities = 23/53 (43%), Positives = 31/53 (58%), Gaps = 3/53 (5%)
Query: 25 DAGGFECNICFELAQDPIVTLCGHLFCWPCLYRWLHHHSHSQECPVCKAVVQE 77
D FEC++C L +P+ T CGH FC CL R L H + CP+CK ++E
Sbjct: 473 DVSDFECSLCMRLFFEPVTTPCGHSFCKNCLERCLDHAPY---CPLCKESLKE 522
>sp|Q496Y0|LONF3_HUMAN LON peptidase N-terminal domain and RING finger protein 3 OS=Homo
sapiens GN=LONRF3 PE=1 SV=1
Length = 759
Score = 53.1 bits (126), Expect = 1e-06, Method: Composition-based stats.
Identities = 22/48 (45%), Positives = 29/48 (60%), Gaps = 3/48 (6%)
Query: 25 DAGGFECNICFELAQDPIVTLCGHLFCWPCLYRWLHHHSHSQECPVCK 72
DA EC +C L +P+ T CGH FC CL R L H++ +CP+CK
Sbjct: 461 DASDLECALCMRLFYEPVTTPCGHTFCLKCLERCLDHNA---KCPLCK 505
Score = 37.0 bits (84), Expect = 0.11, Method: Composition-based stats.
Identities = 16/44 (36%), Positives = 21/44 (47%), Gaps = 3/44 (6%)
Query: 28 GFECNICFELAQDPIVTLCGHLFCWPCLYRWLHHHSHSQECPVC 71
GF+C C DP+ CGH FC CL R + + C +C
Sbjct: 155 GFKCRKCHGFLSDPVSLSCGHTFCKLCLER---GRAADRRCALC 195
>sp|Q8HXH0|LONF3_MACFA LON peptidase N-terminal domain and RING finger protein 3 OS=Macaca
fascicularis GN=LONRF3 PE=2 SV=1
Length = 718
Score = 52.8 bits (125), Expect = 2e-06, Method: Composition-based stats.
Identities = 22/48 (45%), Positives = 29/48 (60%), Gaps = 3/48 (6%)
Query: 25 DAGGFECNICFELAQDPIVTLCGHLFCWPCLYRWLHHHSHSQECPVCK 72
DA EC +C L +P+ T CGH FC CL R L H++ +CP+CK
Sbjct: 420 DASDLECALCMRLFYEPVTTPCGHTFCLKCLERCLDHNA---KCPLCK 464
Score = 42.0 bits (97), Expect = 0.004, Method: Composition-based stats.
Identities = 29/91 (31%), Positives = 38/91 (41%), Gaps = 23/91 (25%)
Query: 28 GFECNICFELAQDPIVTLCGHLFCWPCLYRWLHHHSHSQECPVCKAVVQEEKLVPLYGRG 87
GF+C C DP+ CGH FC CL R + + C +C V+ L+ GR
Sbjct: 155 GFKCRKCHGFLSDPVSLSCGHTFCKLCLER---GRAADRRCALCG--VKLSALMVATGRA 209
Query: 88 KTQTDPRSKSYPGIDIPSRPAGQRPETAPPP 118
+ SR AGQ+P PPP
Sbjct: 210 RG---------------SRRAGQQP---PPP 222
>sp|Q6J6I9|BRCA1_MACMU Breast cancer type 1 susceptibility protein homolog OS=Macaca
mulatta GN=BRCA1 PE=3 SV=1
Length = 1863
Score = 52.8 bits (125), Expect = 2e-06, Method: Composition-based stats.
Identities = 19/52 (36%), Positives = 30/52 (57%)
Query: 29 FECNICFELAQDPIVTLCGHLFCWPCLYRWLHHHSHSQECPVCKAVVQEEKL 80
EC IC EL ++P+ T C H+FC C+ + L+ +CP+CK + + L
Sbjct: 22 LECPICLELIKEPVSTKCDHIFCRFCMLKLLNQKKGPSQCPLCKNDITKRSL 73
>sp|Q6J6J0|BRCA1_PONPY Breast cancer type 1 susceptibility protein homolog OS=Pongo
pygmaeus GN=BRCA1 PE=3 SV=1
Length = 1863
Score = 52.4 bits (124), Expect = 2e-06, Method: Composition-based stats.
Identities = 19/52 (36%), Positives = 30/52 (57%)
Query: 29 FECNICFELAQDPIVTLCGHLFCWPCLYRWLHHHSHSQECPVCKAVVQEEKL 80
EC IC EL ++P+ T C H+FC C+ + L+ +CP+CK + + L
Sbjct: 22 LECPICLELIKEPVSTKCDHIFCKFCMLKLLNQKKGPSQCPLCKNDITKRSL 73
>sp|Q9GKK8|BRCA1_PANTR Breast cancer type 1 susceptibility protein homolog OS=Pan
troglodytes GN=BRCA1 PE=2 SV=2
Length = 1863
Score = 52.4 bits (124), Expect = 2e-06, Method: Composition-based stats.
Identities = 19/52 (36%), Positives = 30/52 (57%)
Query: 29 FECNICFELAQDPIVTLCGHLFCWPCLYRWLHHHSHSQECPVCKAVVQEEKL 80
EC IC EL ++P+ T C H+FC C+ + L+ +CP+CK + + L
Sbjct: 22 LECPICLELIKEPVSTKCDHIFCKFCMLKLLNQKKGPSQCPLCKNDITKRSL 73
>sp|Q95153|BRCA1_CANFA Breast cancer type 1 susceptibility protein homolog OS=Canis
familiaris GN=BRCA1 PE=3 SV=1
Length = 1878
Score = 52.4 bits (124), Expect = 2e-06, Method: Composition-based stats.
Identities = 19/52 (36%), Positives = 30/52 (57%)
Query: 29 FECNICFELAQDPIVTLCGHLFCWPCLYRWLHHHSHSQECPVCKAVVQEEKL 80
EC IC EL ++P+ T C H+FC C+ + L+ +CP+CK + + L
Sbjct: 22 LECPICLELIKEPVSTKCDHIFCKFCMLKLLNQRKGPSQCPLCKNDITKRSL 73
>sp|Q864U1|BRCA1_BOVIN Breast cancer type 1 susceptibility protein homolog OS=Bos taurus
GN=BRCA1 PE=1 SV=1
Length = 1849
Score = 52.4 bits (124), Expect = 2e-06, Method: Composition-based stats.
Identities = 19/52 (36%), Positives = 30/52 (57%)
Query: 29 FECNICFELAQDPIVTLCGHLFCWPCLYRWLHHHSHSQECPVCKAVVQEEKL 80
EC IC EL ++P+ T C H+FC C+ + L+ +CP+CK + + L
Sbjct: 22 LECPICLELIKEPVSTKCDHIFCKFCMLKLLNQKKGPSQCPLCKNDITKRSL 73
>sp|P38398|BRCA1_HUMAN Breast cancer type 1 susceptibility protein OS=Homo sapiens
GN=BRCA1 PE=1 SV=2
Length = 1863
Score = 52.4 bits (124), Expect = 2e-06, Method: Composition-based stats.
Identities = 19/52 (36%), Positives = 30/52 (57%)
Query: 29 FECNICFELAQDPIVTLCGHLFCWPCLYRWLHHHSHSQECPVCKAVVQEEKL 80
EC IC EL ++P+ T C H+FC C+ + L+ +CP+CK + + L
Sbjct: 22 LECPICLELIKEPVSTKCDHIFCKFCMLKLLNQKKGPSQCPLCKNDITKRSL 73
>sp|Q6J6I8|BRCA1_GORGO Breast cancer type 1 susceptibility protein homolog OS=Gorilla
gorilla gorilla GN=BRCA1 PE=3 SV=1
Length = 1863
Score = 52.4 bits (124), Expect = 2e-06, Method: Composition-based stats.
Identities = 19/52 (36%), Positives = 30/52 (57%)
Query: 29 FECNICFELAQDPIVTLCGHLFCWPCLYRWLHHHSHSQECPVCKAVVQEEKL 80
EC IC EL ++P+ T C H+FC C+ + L+ +CP+CK + + L
Sbjct: 22 LECPICLELIKEPVSTKCDHIFCKFCMLKLLNQKKGPSQCPLCKNDITKRSL 73
>sp|O54952|BRCA1_RAT Breast cancer type 1 susceptibility protein homolog OS=Rattus
norvegicus GN=Brca1 PE=1 SV=1
Length = 1817
Score = 52.0 bits (123), Expect = 3e-06, Method: Composition-based stats.
Identities = 19/52 (36%), Positives = 30/52 (57%)
Query: 29 FECNICFELAQDPIVTLCGHLFCWPCLYRWLHHHSHSQECPVCKAVVQEEKL 80
EC IC EL ++P+ T C H+FC C+ + L+ +CP+CK + + L
Sbjct: 22 LECPICLELIKEPVSTQCDHIFCKFCMLKLLNQKKGPSQCPLCKNEITKRSL 73
>sp|P48754|BRCA1_MOUSE Breast cancer type 1 susceptibility protein homolog OS=Mus
musculus GN=Brca1 PE=1 SV=3
Length = 1812
Score = 51.6 bits (122), Expect = 4e-06, Method: Composition-based stats.
Identities = 19/52 (36%), Positives = 30/52 (57%)
Query: 29 FECNICFELAQDPIVTLCGHLFCWPCLYRWLHHHSHSQECPVCKAVVQEEKL 80
EC IC EL ++P+ T C H+FC C+ + L+ +CP+CK + + L
Sbjct: 22 LECPICLELIKEPVSTKCDHIFCKFCMLKLLNQKKGPSQCPLCKNEITKRSL 73
>sp|Q9UUF0|PEX10_SCHPO Peroxisome biogenesis factor 10 OS=Schizosaccharomyces pombe
(strain 972 / ATCC 24843) GN=pas4 PE=3 SV=1
Length = 306
Score = 51.2 bits (121), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 22/57 (38%), Positives = 31/57 (54%), Gaps = 3/57 (5%)
Query: 27 GGFECNICFELAQDPIVTLCGHLFCWPCLYRWLHHHSHSQECPVCKAVVQEEKLVPL 83
G +C++C E P T CGH+FCW C+ W S ECP+C+A K++ L
Sbjct: 252 GNRKCSLCMEFIHCPAATECGHIFCWSCINGW---TSKKSECPLCRAFSSPSKIILL 305
>sp|Q14527|HLTF_HUMAN Helicase-like transcription factor OS=Homo sapiens GN=HLTF PE=1
SV=2
Length = 1009
Score = 51.2 bits (121), Expect = 5e-06, Method: Composition-based stats.
Identities = 17/52 (32%), Positives = 31/52 (59%)
Query: 30 ECNICFELAQDPIVTLCGHLFCWPCLYRWLHHHSHSQECPVCKAVVQEEKLV 81
EC IC + P++T C H+FC PC+ + + + +CP+C+ + E+ L+
Sbjct: 759 ECAICLDSLTVPVITHCAHVFCKPCICQVIQNEQPHAKCPLCRNDIHEDNLL 810
>sp|Q6PCN7|HLTF_MOUSE Helicase-like transcription factor OS=Mus musculus GN=Hltf PE=1
SV=1
Length = 1003
Score = 50.8 bits (120), Expect = 7e-06, Method: Composition-based stats.
Identities = 17/52 (32%), Positives = 30/52 (57%)
Query: 30 ECNICFELAQDPIVTLCGHLFCWPCLYRWLHHHSHSQECPVCKAVVQEEKLV 81
EC IC + P++T C H+FC PC+ + +H +CP+C+ + + L+
Sbjct: 753 ECAICLDSLTFPVITHCAHVFCKPCICQVIHSEQPHAKCPLCRNEIHGDNLL 804
>sp|O60683|PEX10_HUMAN Peroxisome biogenesis factor 10 OS=Homo sapiens GN=PEX10 PE=1 SV=1
Length = 326
Score = 50.8 bits (120), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 22/53 (41%), Positives = 29/53 (54%), Gaps = 3/53 (5%)
Query: 31 CNICFELAQDPIVTLCGHLFCWPCLYRWLHHHSHSQECPVCKAVVQEEKLVPL 83
C +C E + P T CGHLFCW C+ W S ECP+C+ +KL+ L
Sbjct: 273 CTLCLEERRHPTATPCGHLFCWECITAWC---SSKAECPLCREKFPPQKLIYL 322
>sp|Q8HXW8|PEX10_MACFA Peroxisome biogenesis factor 10 OS=Macaca fascicularis GN=PEX10
PE=2 SV=1
Length = 326
Score = 50.4 bits (119), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 22/53 (41%), Positives = 29/53 (54%), Gaps = 3/53 (5%)
Query: 31 CNICFELAQDPIVTLCGHLFCWPCLYRWLHHHSHSQECPVCKAVVQEEKLVPL 83
C +C E + P T CGHLFCW C+ W S ECP+C+ +KL+ L
Sbjct: 273 CTLCLEERRHPTATPCGHLFCWECITAWC---SSKAECPLCREKFPPQKLIYL 322
>sp|Q9P3U8|YJ95_SCHPO Uncharacterized RING finger protein C548.05c OS=Schizosaccharomyces
pombe (strain 972 / ATCC 24843) GN=SPCC548.05c PE=4 SV=1
Length = 468
Score = 50.1 bits (118), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 20/44 (45%), Positives = 24/44 (54%), Gaps = 3/44 (6%)
Query: 29 FECNICFELAQDPIVTLCGHLFCWPCLYRWLHHHSHSQECPVCK 72
EC IC E Q P T CGH +C+ CL WL S+ CP C+
Sbjct: 83 LECPICTEALQRPFTTHCGHTYCYECLLNWL---KESKSCPTCR 123
>sp|Q06554|IRC20_YEAST Uncharacterized ATP-dependent helicase IRC20 OS=Saccharomyces
cerevisiae (strain ATCC 204508 / S288c) GN=IRC20 PE=1
SV=1
Length = 1556
Score = 49.7 bits (117), Expect = 2e-05, Method: Composition-based stats.
Identities = 23/67 (34%), Positives = 34/67 (50%), Gaps = 3/67 (4%)
Query: 7 ESTSVPSQNPSCVGNSANDAGGFECNICFELAQDPIVTLCGHLFCWPCLYRWLHHHSHSQ 66
ES + +N S + ++ ND C+IC + + CGH FC C+ WL HS
Sbjct: 1215 ESRLIYLKNLSRLKDTLNDNQILSCSICLGEVEIGAIIKCGHYFCKSCILTWLRAHS--- 1271
Query: 67 ECPVCKA 73
+CP+CK
Sbjct: 1272 KCPICKG 1278
>sp|Q8NHY2|RFWD2_HUMAN E3 ubiquitin-protein ligase RFWD2 OS=Homo sapiens GN=RFWD2 PE=1
SV=1
Length = 731
Score = 49.3 bits (116), Expect = 2e-05, Method: Composition-based stats.
Identities = 25/67 (37%), Positives = 37/67 (55%), Gaps = 6/67 (8%)
Query: 12 PSQNPSCVG--NSAND-AGGFECNICFELAQDPIVTLCGHLFCWPCLYRWLHHHSHSQEC 68
P P C G NS D + F C ICF++ ++ +T CGH FC+ C+++ L ++ C
Sbjct: 114 PLLAPLCNGLINSYEDKSNDFVCPICFDMIEEAYMTKCGHSFCYKCIHQSLEDNN---RC 170
Query: 69 PVCKAVV 75
P C VV
Sbjct: 171 PKCNYVV 177
>sp|Q75EN0|RAD18_ASHGO Postreplication repair E3 ubiquitin-protein ligase RAD18 OS=Ashbya
gossypii (strain ATCC 10895 / CBS 109.51 / FGSC 9923 /
NRRL Y-1056) GN=RAD18 PE=3 SV=1
Length = 443
Score = 48.9 bits (115), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 25/94 (26%), Positives = 46/94 (48%), Gaps = 6/94 (6%)
Query: 29 FECNICFELAQDPIVTLCGHLFCWPCLYRWLHHHSHSQECPVCKAVVQEEKLVPLYGRGK 88
C+IC ++ Q P++T CGH FC C+ +L+ S CP+C A +++ L + G+
Sbjct: 30 LRCHICKDMLQTPVLTQCGHTFCSLCIREYLNKESR---CPLCLAELRQNMLQKEFLVGE 86
Query: 89 TQT---DPRSKSYPGIDIPSRPAGQRPETAPPPE 119
+ R++ + IP + + + P E
Sbjct: 87 LAACYMELRARLLETVRIPPKKVAEVVQNNSPIE 120
>sp|P33288|RAD18_NEUCR Postreplication repair E3 ubiquitin-protein ligase rad-18
OS=Neurospora crassa (strain ATCC 24698 / 74-OR23-1A /
CBS 708.71 / DSM 1257 / FGSC 987) GN=uvs-2 PE=3 SV=2
Length = 501
Score = 48.9 bits (115), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 21/53 (39%), Positives = 30/53 (56%), Gaps = 3/53 (5%)
Query: 28 GFECNICFELAQDPIVTLCGHLFCWPCLYRWLHHHSHSQECPVCKAVVQEEKL 80
F C++C + P++T C H FC C+ R L S +CP+C+A QE KL
Sbjct: 31 AFRCHVCKDFYDSPMLTSCNHTFCSLCIRRCLSVDS---KCPLCRATDQESKL 80
>sp|Q9R1A8|RFWD2_MOUSE E3 ubiquitin-protein ligase RFWD2 OS=Mus musculus GN=Rfwd2 PE=1
SV=2
Length = 733
Score = 48.5 bits (114), Expect = 3e-05, Method: Composition-based stats.
Identities = 24/63 (38%), Positives = 36/63 (57%), Gaps = 6/63 (9%)
Query: 16 PSCVG--NSAND-AGGFECNICFELAQDPIVTLCGHLFCWPCLYRWLHHHSHSQECPVCK 72
P C G NS D + F C ICF++ ++ +T CGH FC+ C+++ L ++ CP C
Sbjct: 120 PLCNGLLNSYEDKSNDFVCPICFDMIEEAYMTKCGHSFCYKCIHQSLEDNN---RCPKCN 176
Query: 73 AVV 75
VV
Sbjct: 177 YVV 179
>sp|Q1XHU0|TRI39_PANTR E3 ubiquitin-protein ligase TRIM39 OS=Pan troglodytes GN=TRIM39
PE=3 SV=1
Length = 518
Score = 48.5 bits (114), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 18/52 (34%), Positives = 27/52 (51%)
Query: 31 CNICFELAQDPIVTLCGHLFCWPCLYRWLHHHSHSQECPVCKAVVQEEKLVP 82
C++C E ++P++ CGH FC C+ RW CPVC+ + L P
Sbjct: 29 CSVCLEYLKEPVIIECGHNFCKACITRWWEDLERDFPCPVCRKTSRYRSLRP 80
>sp|Q9HCM9|TRI39_HUMAN E3 ubiquitin-protein ligase TRIM39 OS=Homo sapiens GN=TRIM39 PE=1
SV=2
Length = 518
Score = 48.5 bits (114), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 18/52 (34%), Positives = 27/52 (51%)
Query: 31 CNICFELAQDPIVTLCGHLFCWPCLYRWLHHHSHSQECPVCKAVVQEEKLVP 82
C++C E ++P++ CGH FC C+ RW CPVC+ + L P
Sbjct: 29 CSVCLEYLKEPVIIECGHNFCKACITRWWEDLERDFPCPVCRKTSRYRSLRP 80
>sp|O60106|YOXA_SCHPO LON peptidase N-terminal domain and RING finger protein C14F5.10c
OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843)
GN=SPBC14F5.10c PE=4 SV=1
Length = 486
Score = 48.5 bits (114), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 22/49 (44%), Positives = 30/49 (61%), Gaps = 3/49 (6%)
Query: 24 NDAGGFECNICFELAQDPIVTLCGHLFCWPCLYRWLHHHSHSQECPVCK 72
N + EC ICF + DP+V+ CGH FC PCL + L + S +CP C+
Sbjct: 162 NVSRELECQICFGMLYDPVVSPCGHTFCGPCLMQAL---TQSPQCPTCR 207
>sp|Q95216|HLTF_RABIT Helicase-like transcription factor OS=Oryctolagus cuniculus GN=HLTF
PE=1 SV=1
Length = 1005
Score = 48.5 bits (114), Expect = 4e-05, Method: Composition-based stats.
Identities = 16/52 (30%), Positives = 30/52 (57%)
Query: 30 ECNICFELAQDPIVTLCGHLFCWPCLYRWLHHHSHSQECPVCKAVVQEEKLV 81
EC IC + P++T C H+FC PC+ + + + +CP+C+ + + L+
Sbjct: 756 ECAICLDSLTVPVITHCAHVFCKPCICQCIQNEQPHAKCPLCRNDIHGDNLL 807
>sp|Q9ESN2|TRI39_MOUSE E3 ubiquitin-protein ligase TRIM39 OS=Mus musculus GN=Trim39 PE=2
SV=1
Length = 488
Score = 48.5 bits (114), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 18/52 (34%), Positives = 27/52 (51%)
Query: 31 CNICFELAQDPIVTLCGHLFCWPCLYRWLHHHSHSQECPVCKAVVQEEKLVP 82
C++C E ++P++ CGH FC C+ RW CPVC+ + L P
Sbjct: 29 CSVCLEYLKEPVIIECGHNFCKACITRWWEDLERDFPCPVCRKTSRYRSLRP 80
>sp|Q6MFZ5|TRI39_RAT E3 ubiquitin-protein ligase TRIM39 OS=Rattus norvegicus GN=Trim39
PE=2 SV=1
Length = 488
Score = 48.1 bits (113), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 18/52 (34%), Positives = 27/52 (51%)
Query: 31 CNICFELAQDPIVTLCGHLFCWPCLYRWLHHHSHSQECPVCKAVVQEEKLVP 82
C++C E ++P++ CGH FC C+ RW CPVC+ + L P
Sbjct: 29 CSVCLEYLKEPVIIECGHNFCKACITRWWEDLERDFPCPVCRKTSRYRSLRP 80
>sp|B1AUE5|PEX10_MOUSE Peroxisome biogenesis factor 10 OS=Mus musculus GN=Pex10 PE=2 SV=1
Length = 324
Score = 48.1 bits (113), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 21/53 (39%), Positives = 29/53 (54%), Gaps = 3/53 (5%)
Query: 31 CNICFELAQDPIVTLCGHLFCWPCLYRWLHHHSHSQECPVCKAVVQEEKLVPL 83
C +C E + T CGHLFCW C+ W + + ECP+C+ +KLV L
Sbjct: 271 CTLCLEERRHSTATPCGHLFCWECITEWCNTKT---ECPLCREKFPPQKLVYL 320
>sp|Q9FNI6|SM3L2_ARATH Putative SWI/SNF-related matrix-associated actin-dependent
regulator of chromatin subfamily A member 3-like 2
OS=Arabidopsis thaliana GN=At5g22750 PE=2 SV=1
Length = 1029
Score = 48.1 bits (113), Expect = 5e-05, Method: Composition-based stats.
Identities = 23/64 (35%), Positives = 33/64 (51%), Gaps = 3/64 (4%)
Query: 30 ECNICFELAQDPIVTLCGHLFCWPCLY-RWLHHHSHSQECPVCKAVVQEEKLVPLYGRGK 88
EC IC E +D ++T C H C CL W +S S CPVC+ V +++L+ +
Sbjct: 793 ECPICLEALEDAVLTPCAHRLCRECLLASW--RNSTSGLCPVCRNTVSKQELITAPTESR 850
Query: 89 TQTD 92
Q D
Sbjct: 851 FQVD 854
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.323 0.141 0.470
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 94,796,552
Number of Sequences: 539616
Number of extensions: 4321622
Number of successful extensions: 11372
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 420
Number of HSP's successfully gapped in prelim test: 423
Number of HSP's that attempted gapping in prelim test: 10742
Number of HSP's gapped (non-prelim): 928
length of query: 222
length of database: 191,569,459
effective HSP length: 113
effective length of query: 109
effective length of database: 130,592,851
effective search space: 14234620759
effective search space used: 14234620759
T: 11
A: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 59 (27.3 bits)