Query 027545
Match_columns 222
No_of_seqs 282 out of 1923
Neff 6.7
Searched_HMMs 29240
Date Mon Mar 25 19:32:26 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/027545.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/027545hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2djb_A Polycomb group ring fin 99.6 8.5E-16 2.9E-20 107.8 6.6 64 19-85 6-70 (72)
2 2ecw_A Tripartite motif-contai 99.6 5.8E-15 2E-19 105.5 9.1 68 21-88 12-82 (85)
3 2ysl_A Tripartite motif-contai 99.6 2.3E-15 7.8E-20 105.3 6.0 60 21-80 13-72 (73)
4 2ecv_A Tripartite motif-contai 99.6 7E-15 2.4E-19 105.0 8.2 68 21-88 12-82 (85)
5 2d8t_A Dactylidin, ring finger 99.6 1.3E-15 4.6E-20 106.5 3.7 58 22-82 9-66 (71)
6 2yur_A Retinoblastoma-binding 99.5 9.2E-15 3.1E-19 103.2 6.7 57 19-76 6-63 (74)
7 2ecy_A TNF receptor-associated 99.5 7.5E-15 2.6E-19 101.1 5.3 58 21-80 8-65 (66)
8 2csy_A Zinc finger protein 183 99.5 8.2E-15 2.8E-19 104.9 5.7 54 20-76 7-60 (81)
9 1t1h_A Gspef-atpub14, armadill 99.5 7.3E-15 2.5E-19 104.2 5.1 63 24-88 4-66 (78)
10 3ng2_A RNF4, snurf, ring finge 99.5 2.7E-15 9.1E-20 104.3 2.6 58 24-84 6-70 (71)
11 2ysj_A Tripartite motif-contai 99.5 2.2E-14 7.5E-19 97.8 7.1 52 20-71 12-63 (63)
12 2egp_A Tripartite motif-contai 99.5 4.1E-15 1.4E-19 105.4 3.4 67 22-88 6-76 (79)
13 2ect_A Ring finger protein 126 99.5 1.7E-14 5.7E-19 102.3 6.0 61 20-83 7-70 (78)
14 3ztg_A E3 ubiquitin-protein li 99.5 1.8E-14 6.1E-19 105.3 6.1 65 21-86 6-72 (92)
15 2ct2_A Tripartite motif protei 99.5 2.5E-14 8.6E-19 103.2 6.6 60 21-80 8-71 (88)
16 1wgm_A Ubiquitin conjugation f 99.5 4.5E-14 1.5E-18 105.5 6.1 66 22-90 16-82 (98)
17 2ea6_A Ring finger protein 4; 99.5 1.9E-14 6.6E-19 99.1 3.7 53 22-77 9-68 (69)
18 2kr4_A Ubiquitin conjugation f 99.5 3.8E-14 1.3E-18 103.1 4.9 64 22-88 8-71 (85)
19 2xeu_A Ring finger protein 4; 99.5 1.5E-14 5.1E-19 98.2 2.2 55 27-84 2-63 (64)
20 2ecn_A Ring finger protein 141 99.4 4.8E-14 1.6E-18 97.9 3.8 56 21-80 8-63 (70)
21 2ecj_A Tripartite motif-contai 99.4 1.1E-13 3.8E-18 92.3 5.2 51 21-71 8-58 (58)
22 2kre_A Ubiquitin conjugation f 99.4 1E-13 3.4E-18 104.0 5.4 65 22-89 23-87 (100)
23 3lrq_A E3 ubiquitin-protein li 99.4 5.5E-14 1.9E-18 104.8 2.7 62 23-86 17-79 (100)
24 1g25_A CDK-activating kinase a 99.4 1.5E-13 5E-18 94.3 4.0 57 27-85 2-63 (65)
25 1jm7_A BRCA1, breast cancer ty 99.4 1.9E-13 6.5E-18 102.9 4.9 61 27-87 20-80 (112)
26 2ep4_A Ring finger protein 24; 99.4 2.6E-13 8.7E-18 95.2 5.1 55 20-77 7-64 (74)
27 2y43_A E3 ubiquitin-protein li 99.4 3.7E-14 1.3E-18 105.2 0.2 59 25-86 19-78 (99)
28 2kiz_A E3 ubiquitin-protein li 99.4 5.5E-13 1.9E-17 92.2 5.1 53 22-77 8-63 (69)
29 2yu4_A E3 SUMO-protein ligase 99.4 4.7E-13 1.6E-17 98.8 4.7 66 25-90 4-76 (94)
30 3fl2_A E3 ubiquitin-protein li 99.4 3.4E-13 1.2E-17 103.9 3.9 57 26-84 50-107 (124)
31 1x4j_A Ring finger protein 38; 99.3 4.7E-13 1.6E-17 94.2 4.0 52 23-77 18-72 (75)
32 4ap4_A E3 ubiquitin ligase RNF 99.3 4E-13 1.4E-17 103.2 3.4 59 25-86 4-69 (133)
33 4ayc_A E3 ubiquitin-protein li 99.3 3.1E-13 1.1E-17 106.2 2.7 49 27-78 52-100 (138)
34 1chc_A Equine herpes virus-1 r 99.3 1.2E-12 4.1E-17 90.1 5.1 48 26-76 3-51 (68)
35 2ecm_A Ring finger and CHY zin 99.3 7.9E-13 2.7E-17 87.3 3.5 48 26-76 3-54 (55)
36 2ckl_A Polycomb group ring fin 99.3 6.3E-13 2.2E-17 100.0 3.4 51 25-78 12-63 (108)
37 3hct_A TNF receptor-associated 99.3 8.7E-13 3E-17 100.9 4.2 62 22-85 12-73 (118)
38 2c2l_A CHIP, carboxy terminus 99.3 1E-12 3.5E-17 112.7 5.0 65 23-89 203-267 (281)
39 2l0b_A E3 ubiquitin-protein li 99.3 1.3E-12 4.6E-17 95.7 4.1 51 24-77 36-89 (91)
40 1z6u_A NP95-like ring finger p 99.3 1.4E-12 4.9E-17 104.2 4.3 57 27-85 77-134 (150)
41 3l11_A E3 ubiquitin-protein li 99.3 3.5E-13 1.2E-17 102.4 0.7 53 23-77 10-62 (115)
42 1iym_A EL5; ring-H2 finger, ub 99.3 1.5E-12 5.3E-17 85.9 3.7 48 26-76 3-54 (55)
43 1v87_A Deltex protein 2; ring- 99.3 6.1E-12 2.1E-16 95.2 5.9 52 27-78 24-95 (114)
44 1rmd_A RAG1; V(D)J recombinati 99.3 3E-12 1E-16 97.3 4.2 56 25-82 20-75 (116)
45 3knv_A TNF receptor-associated 99.3 1E-12 3.4E-17 104.2 1.5 52 23-76 26-77 (141)
46 2ckl_B Ubiquitin ligase protei 99.2 2.5E-12 8.4E-17 103.7 3.3 50 26-77 52-102 (165)
47 4ap4_A E3 ubiquitin ligase RNF 99.2 1.8E-12 6E-17 99.6 2.0 57 25-84 69-132 (133)
48 2f42_A STIP1 homology and U-bo 99.2 5.9E-12 2E-16 103.7 4.6 64 23-88 101-164 (179)
49 1e4u_A Transcriptional repress 99.2 9.3E-12 3.2E-16 89.2 4.9 55 24-80 7-65 (78)
50 1jm7_B BARD1, BRCA1-associated 99.2 1.9E-12 6.3E-17 98.9 1.3 57 24-85 18-75 (117)
51 1bor_A Transcription factor PM 99.2 3.7E-12 1.3E-16 85.2 1.5 47 25-77 3-49 (56)
52 2ecl_A Ring-box protein 2; RNF 99.2 1.9E-11 6.4E-16 87.7 4.9 51 26-79 13-78 (81)
53 3hcs_A TNF receptor-associated 99.2 1.4E-11 4.8E-16 99.6 4.2 62 22-85 12-73 (170)
54 2vje_A E3 ubiquitin-protein li 99.1 1.7E-11 5.8E-16 84.3 3.1 54 26-84 6-62 (64)
55 2vje_B MDM4 protein; proto-onc 99.1 2.4E-11 8.4E-16 83.3 2.9 54 26-84 5-61 (63)
56 2ea5_A Cell growth regulator w 99.1 1.1E-10 3.8E-15 81.3 5.9 54 22-84 9-63 (68)
57 2ecg_A Baculoviral IAP repeat- 99.1 6.9E-12 2.4E-16 88.6 -0.9 45 26-77 23-68 (75)
58 2bay_A PRE-mRNA splicing facto 99.1 4.2E-11 1.4E-15 81.9 2.9 55 28-85 3-58 (61)
59 4ic3_A E3 ubiquitin-protein li 99.1 2.5E-11 8.6E-16 85.6 1.6 46 25-77 21-67 (74)
60 2y1n_A E3 ubiquitin-protein li 99.1 7.7E-11 2.6E-15 107.4 4.8 54 27-82 331-384 (389)
61 3htk_C E3 SUMO-protein ligase 99.0 1.2E-10 4E-15 101.0 4.1 62 25-87 178-242 (267)
62 3dpl_R Ring-box protein 1; ubi 99.0 2.1E-10 7.2E-15 86.8 4.2 48 27-77 36-101 (106)
63 2d8s_A Cellular modulator of i 99.0 9.2E-10 3.1E-14 79.1 6.7 52 25-77 12-70 (80)
64 4a0k_B E3 ubiquitin-protein li 98.8 7E-10 2.4E-14 85.4 0.6 48 27-77 47-112 (117)
65 2yho_A E3 ubiquitin-protein li 98.8 1.1E-09 3.8E-14 78.3 1.4 50 26-84 16-66 (79)
66 1wim_A KIAA0161 protein; ring 98.8 1.2E-09 4.1E-14 80.1 1.4 56 26-81 3-70 (94)
67 2ct0_A Non-SMC element 1 homol 98.8 9.7E-09 3.3E-13 72.8 5.9 57 19-76 6-63 (74)
68 3t6p_A Baculoviral IAP repeat- 98.7 4.6E-09 1.6E-13 94.5 1.5 45 26-77 293-338 (345)
69 3k1l_B Fancl; UBC, ring, RWD, 98.4 1.1E-07 3.8E-12 85.2 2.9 56 22-77 302-373 (381)
70 1vyx_A ORF K3, K3RING; zinc-bi 98.3 5.2E-07 1.8E-11 61.2 4.3 50 26-76 4-58 (60)
71 3vk6_A E3 ubiquitin-protein li 97.7 1.7E-05 5.9E-10 58.9 3.2 48 30-79 3-51 (101)
72 3nw0_A Non-structural maintena 97.0 0.00045 1.5E-08 58.8 4.2 50 27-77 179-229 (238)
73 2ko5_A Ring finger protein Z; 96.9 0.0058 2E-07 44.7 8.5 51 24-78 24-74 (99)
74 3m62_A Ubiquitin conjugation f 96.7 0.001 3.5E-08 66.5 4.1 64 23-89 886-950 (968)
75 2jun_A Midline-1; B-BOX, TRIM, 96.3 0.002 6.9E-08 46.9 2.6 32 27-58 2-36 (101)
76 2cs3_A Protein C14ORF4, MY039 96.1 0.0071 2.4E-07 43.1 4.5 38 25-62 12-53 (93)
77 3i2d_A E3 SUMO-protein ligase 88.5 0.39 1.3E-05 43.2 4.3 55 27-82 248-305 (371)
78 4fo9_A E3 SUMO-protein ligase 86.6 0.6 2.1E-05 41.8 4.3 54 27-81 214-270 (360)
79 1x64_A Alpha-actinin-2 associa 86.5 1.2 4.1E-05 31.0 5.1 44 24-78 21-64 (89)
80 2lv9_A Histone-lysine N-methyl 83.9 0.26 9E-06 35.9 0.6 52 21-73 21-75 (98)
81 1weo_A Cellulose synthase, cat 83.3 10 0.00035 27.3 8.7 54 27-82 15-75 (93)
82 2lri_C Autoimmune regulator; Z 83.1 1 3.5E-05 30.4 3.3 48 25-74 9-59 (66)
83 1x62_A C-terminal LIM domain p 79.5 1.7 5.8E-05 29.5 3.4 41 26-77 13-53 (79)
84 1wen_A Inhibitor of growth fam 79.4 1.3 4.4E-05 30.3 2.7 53 21-76 9-67 (71)
85 1weu_A Inhibitor of growth fam 79.1 2.3 7.9E-05 30.6 4.1 49 25-76 33-87 (91)
86 1wem_A Death associated transc 77.9 1 3.5E-05 30.9 1.9 52 22-74 10-70 (76)
87 1wev_A Riken cDNA 1110020M19; 77.2 0.13 4.4E-06 36.8 -3.1 56 21-76 9-74 (88)
88 2k16_A Transcription initiatio 75.7 0.5 1.7E-05 32.3 -0.3 53 25-77 15-71 (75)
89 1wd2_A Ariadne-1 protein homol 74.0 0.52 1.8E-05 31.3 -0.5 34 28-61 6-47 (60)
90 1wil_A KIAA1045 protein; ring 70.5 6.7 0.00023 27.9 4.6 39 19-58 6-47 (89)
91 2l43_A N-teminal domain from h 67.4 2.3 7.8E-05 30.2 1.6 55 23-78 20-79 (88)
92 1m3v_A FLIN4, fusion of the LI 66.0 3.4 0.00012 30.5 2.4 50 28-80 32-84 (122)
93 2l5u_A Chromodomain-helicase-D 64.4 3.3 0.00011 27.2 1.9 48 24-73 7-57 (61)
94 3o70_A PHD finger protein 13; 64.2 0.87 3E-05 30.9 -1.1 54 19-73 10-66 (68)
95 3ttc_A HYPF, transcriptional r 64.1 2.7 9.2E-05 40.5 1.9 54 22-75 11-99 (657)
96 2dar_A PDZ and LIM domain prot 63.8 8.4 0.00029 26.6 4.1 41 27-78 24-64 (90)
97 2d8v_A Zinc finger FYVE domain 63.6 4.7 0.00016 27.3 2.5 31 26-57 6-37 (67)
98 2rgt_A Fusion of LIM/homeobox 62.7 8 0.00027 30.0 4.2 47 27-78 32-78 (169)
99 1wfl_A Zinc finger protein 216 61.9 13 0.00043 25.7 4.5 28 26-53 23-51 (74)
100 1wep_A PHF8; structural genomi 61.8 11 0.00036 25.8 4.2 52 23-75 7-64 (79)
101 4g9i_A Hydrogenase maturation 60.6 6 0.00021 38.7 3.7 52 24-75 102-188 (772)
102 3vth_A Hydrogenase maturation 60.5 4 0.00014 40.0 2.4 53 23-75 106-193 (761)
103 1x4u_A Zinc finger, FYVE domai 59.7 5.9 0.0002 27.5 2.6 33 24-56 10-46 (84)
104 1z2q_A LM5-1; membrane protein 59.3 4.2 0.00014 28.4 1.8 53 25-77 18-79 (84)
105 2yt5_A Metal-response element- 59.2 1.3 4.5E-05 29.3 -0.9 51 26-76 4-63 (66)
106 2cot_A Zinc finger protein 435 58.4 23 0.00078 22.7 5.4 45 23-78 13-59 (77)
107 1wfk_A Zinc finger, FYVE domai 58.4 3.8 0.00013 29.0 1.4 50 27-76 8-65 (88)
108 2yw8_A RUN and FYVE domain-con 58.4 4.4 0.00015 28.1 1.8 33 25-57 16-52 (82)
109 1wew_A DNA-binding family prot 56.6 4.9 0.00017 27.6 1.7 54 20-74 8-72 (78)
110 1mm2_A MI2-beta; PHD, zinc fin 53.7 3.3 0.00011 27.2 0.4 49 25-75 6-57 (61)
111 1wg2_A Zinc finger (AN1-like) 53.1 17 0.00058 24.4 3.9 30 24-53 11-41 (64)
112 1joc_A EEA1, early endosomal a 52.2 4.2 0.00015 30.6 0.9 30 27-56 68-101 (125)
113 2lbm_A Transcriptional regulat 51.9 9.4 0.00032 29.6 2.8 50 25-74 60-117 (142)
114 2jtn_A LIM domain-binding prot 51.4 8.7 0.0003 30.2 2.7 25 47-76 106-130 (182)
115 2xjy_A Rhombotin-2; oncoprotei 50.9 13 0.00045 27.2 3.5 48 27-77 28-78 (131)
116 2xqn_T Testin, TESS; metal-bin 50.3 8.9 0.0003 28.0 2.4 46 27-77 29-75 (126)
117 2e6r_A Jumonji/ARID domain-con 50.3 1.5 5E-05 31.5 -2.0 52 23-74 11-66 (92)
118 2l4z_A DNA endonuclease RBBP8, 49.4 13 0.00043 27.6 3.2 39 27-76 60-99 (123)
119 3ql9_A Transcriptional regulat 49.0 16 0.00055 27.8 3.7 50 25-74 54-111 (129)
120 2d8y_A Eplin protein; LIM doma 48.9 21 0.00072 24.5 4.1 40 27-77 14-54 (91)
121 2yql_A PHD finger protein 21A; 48.3 2.1 7.1E-05 27.6 -1.3 46 26-73 7-55 (56)
122 2o35_A Hypothetical protein DU 47.9 7.9 0.00027 28.4 1.7 13 49-61 42-54 (105)
123 3fyb_A Protein of unknown func 47.9 7.9 0.00027 28.3 1.7 13 49-61 41-53 (104)
124 3mpx_A FYVE, rhogef and PH dom 47.3 4 0.00014 36.3 0.0 49 27-75 374-430 (434)
125 2cor_A Pinch protein; LIM doma 47.1 17 0.00059 24.4 3.3 42 26-78 13-54 (79)
126 3mjh_B Early endosome antigen 46.7 3.7 0.00012 24.2 -0.2 14 28-41 5-18 (34)
127 1vfy_A Phosphatidylinositol-3- 46.2 8.7 0.0003 25.9 1.6 28 29-56 12-43 (73)
128 3t7l_A Zinc finger FYVE domain 45.8 6.6 0.00023 27.8 1.0 50 27-76 19-75 (90)
129 1y02_A CARP2, FYVE-ring finger 44.9 6.3 0.00021 29.7 0.8 45 27-74 18-66 (120)
130 1wjp_A Zinc finger protein 295 44.8 28 0.00097 23.8 4.3 17 25-41 13-29 (107)
131 1rut_X Flinc4, fusion protein 44.4 7.4 0.00025 30.8 1.2 48 27-77 31-81 (188)
132 2dj7_A Actin-binding LIM prote 42.9 18 0.00063 24.4 2.9 40 26-76 13-53 (80)
133 2eps_A POZ-, at HOOK-, and zin 42.5 52 0.0018 19.5 4.8 40 26-76 10-52 (54)
134 1fp0_A KAP-1 corepressor; PHD 40.8 17 0.00059 25.8 2.6 52 21-74 18-72 (88)
135 1x6e_A Zinc finger protein 24; 40.8 37 0.0013 21.4 4.1 43 24-77 10-54 (72)
136 1x4w_A Hypothetical protein FL 39.8 15 0.00051 24.9 2.0 29 25-53 12-44 (67)
137 2ee8_A Protein ODD-skipped-rel 39.7 79 0.0027 21.1 6.0 18 24-41 13-30 (106)
138 1f62_A Transcription factor WS 39.7 8.3 0.00028 23.9 0.6 44 30-73 2-49 (51)
139 1jdm_A Sarcolipin; helix, memb 39.4 26 0.0009 19.8 2.6 18 203-221 9-26 (31)
140 1we9_A PHD finger family prote 39.1 5.4 0.00018 26.1 -0.4 50 25-74 3-58 (64)
141 1dvp_A HRS, hepatocyte growth 38.7 8.7 0.0003 31.4 0.8 29 28-56 161-193 (220)
142 2d8x_A Protein pinch; LIM doma 37.9 17 0.00059 23.5 2.1 38 29-77 6-43 (70)
143 1wfh_A Zinc finger (AN1-like) 37.3 40 0.0014 22.5 3.8 29 25-53 12-41 (64)
144 3u5n_A E3 ubiquitin-protein li 37.1 5 0.00017 32.6 -0.9 48 27-76 6-56 (207)
145 2gmg_A Hypothetical protein PF 36.7 10 0.00034 28.0 0.7 27 41-75 68-94 (105)
146 1x61_A Thyroid receptor intera 36.6 42 0.0014 21.6 3.9 34 27-60 32-66 (72)
147 1z60_A TFIIH basal transcripti 36.2 21 0.00072 23.4 2.2 40 29-71 16-58 (59)
148 2cup_A Skeletal muscle LIM-pro 35.4 16 0.00054 25.4 1.6 46 27-77 32-78 (101)
149 3zyq_A Hepatocyte growth facto 35.2 12 0.00042 30.7 1.2 30 28-57 164-197 (226)
150 2jmo_A Parkin; IBR, E3 ligase, 35.0 2.5 8.6E-05 29.3 -2.7 14 45-58 55-68 (80)
151 1wfp_A Zinc finger (AN1-like) 34.8 72 0.0025 21.9 4.8 43 25-73 22-65 (74)
152 2pv0_B DNA (cytosine-5)-methyl 34.6 35 0.0012 30.7 4.1 48 27-74 92-148 (386)
153 2cu8_A Cysteine-rich protein 2 34.5 26 0.00089 23.0 2.6 40 28-78 9-49 (76)
154 2ysm_A Myeloid/lymphoid or mix 34.4 10 0.00035 27.4 0.5 47 26-72 5-55 (111)
155 1wff_A Riken cDNA 2810002D23 p 34.4 83 0.0028 22.1 5.2 29 25-53 22-52 (85)
156 2co8_A NEDD9 interacting prote 34.1 39 0.0013 22.7 3.5 42 27-79 14-56 (82)
157 2lce_A B-cell lymphoma 6 prote 33.9 54 0.0018 20.6 4.1 42 25-77 14-57 (74)
158 2jmi_A Protein YNG1, ING1 homo 33.6 6.4 0.00022 28.1 -0.7 49 23-74 21-76 (90)
159 3v43_A Histone acetyltransfera 32.9 57 0.002 23.5 4.5 46 27-72 4-62 (112)
160 1b8t_A Protein (CRP1); LIM dom 32.8 30 0.001 27.2 3.1 34 27-60 33-67 (192)
161 3o36_A Transcription intermedi 32.7 10 0.00035 30.0 0.2 47 28-76 4-53 (184)
162 1x4l_A Skeletal muscle LIM-pro 32.1 36 0.0012 22.0 3.0 38 29-77 6-47 (72)
163 2puy_A PHD finger protein 21A; 31.5 4.4 0.00015 26.3 -1.8 49 26-76 3-54 (60)
164 1nyp_A Pinch protein; LIM doma 31.2 18 0.00063 23.0 1.3 37 29-76 6-42 (66)
165 2ffw_A Midline-1; B-BOX, ring 31.2 39 0.0013 22.9 3.1 32 26-57 28-62 (78)
166 2epr_A POZ-, at HOOK-, and zin 31.1 67 0.0023 18.3 3.9 37 25-72 9-47 (48)
167 2vnf_A ING 4, P29ING4, inhibit 31.1 5.4 0.00019 26.1 -1.4 45 26-73 8-58 (60)
168 2gqj_A Zinc finger protein KIA 30.8 22 0.00076 24.3 1.8 43 25-78 21-67 (98)
169 2d8z_A Four and A half LIM dom 30.6 39 0.0013 21.6 2.9 25 30-54 7-31 (70)
170 2cur_A Skeletal muscle LIM-pro 30.5 34 0.0012 21.9 2.6 25 30-54 7-31 (69)
171 1wyh_A SLIM 2, skeletal muscle 30.4 24 0.00081 22.8 1.8 25 30-54 7-33 (72)
172 1g47_A Pinch protein; LIM doma 29.5 29 0.00099 22.7 2.1 40 27-77 10-51 (77)
173 2cuq_A Four and A half LIM dom 28.7 55 0.0019 21.4 3.5 38 29-77 16-53 (80)
174 3arc_L Photosystem II reaction 28.0 26 0.00088 20.7 1.4 16 204-219 12-27 (37)
175 1v6g_A Actin binding LIM prote 27.6 23 0.00079 23.6 1.4 39 29-78 16-54 (81)
176 1x63_A Skeletal muscle LIM-pro 27.6 48 0.0017 21.8 3.1 39 29-78 16-56 (82)
177 1xwh_A Autoimmune regulator; P 27.4 9.2 0.00031 25.3 -0.8 48 25-74 5-55 (66)
178 1fjk_A Cardiac phospholamban; 27.3 88 0.003 19.5 3.8 15 207-221 35-49 (52)
179 1x68_A FHL5 protein; four-and- 27.0 27 0.00092 23.0 1.6 39 29-78 6-48 (76)
180 2fiy_A Protein FDHE homolog; F 26.9 4.7 0.00016 35.2 -2.9 46 26-74 180-231 (309)
181 2dlo_A Thyroid receptor-intera 26.3 24 0.00082 23.5 1.2 39 28-77 15-53 (81)
182 1iml_A CRIP, cysteine rich int 26.3 39 0.0013 22.1 2.3 43 27-74 26-70 (76)
183 1x5w_A Zinc finger protein 64, 26.1 69 0.0024 19.8 3.5 41 26-77 7-49 (70)
184 1wig_A KIAA1808 protein; LIM d 26.1 29 0.001 22.8 1.6 36 30-76 7-42 (73)
185 2jne_A Hypothetical protein YF 25.8 1.9 6.3E-05 31.6 -4.7 41 28-76 32-72 (101)
186 1x6a_A LIMK-2, LIM domain kina 25.5 26 0.00089 23.3 1.3 36 30-76 17-52 (81)
187 2rdd_B UPF0092 membrane protei 25.5 44 0.0015 19.5 2.2 16 206-221 5-20 (37)
188 2ro1_A Transcription intermedi 24.4 16 0.00054 29.3 -0.0 46 29-74 3-49 (189)
189 1x4k_A Skeletal muscle LIM-pro 24.4 31 0.0011 22.2 1.5 25 30-54 7-33 (72)
190 1x3h_A Leupaxin; paxillin fami 24.1 64 0.0022 21.1 3.1 38 29-77 16-53 (80)
191 1yod_A Water-solublized phosph 23.9 1E+02 0.0035 17.2 3.5 9 212-220 19-27 (30)
192 1wee_A PHD finger family prote 23.3 32 0.0011 22.8 1.4 53 21-74 9-66 (72)
193 2lv2_A Insulinoma-associated p 23.3 1.7E+02 0.0059 19.6 5.4 42 26-78 26-69 (85)
194 3c6w_A P28ING5, inhibitor of g 21.8 10 0.00036 24.6 -1.3 45 26-73 7-57 (59)
195 3kv5_D JMJC domain-containing 21.5 26 0.00089 32.3 0.8 52 23-75 32-89 (488)
196 2lat_A Dolichyl-diphosphooligo 21.4 58 0.002 19.3 2.1 19 203-221 6-24 (37)
197 3shb_A E3 ubiquitin-protein li 21.3 8.9 0.0003 26.5 -1.8 44 30-73 28-76 (77)
198 2e6s_A E3 ubiquitin-protein li 20.9 46 0.0016 22.7 1.8 44 30-73 28-76 (77)
199 3arc_I Photosystem II reaction 20.7 59 0.002 19.4 2.0 16 206-221 5-20 (38)
200 3a1b_A DNA (cytosine-5)-methyl 20.6 53 0.0018 25.8 2.4 44 27-73 78-133 (159)
201 2g6q_A Inhibitor of growth pro 20.1 12 0.0004 24.7 -1.4 45 26-73 9-59 (62)
No 1
>2djb_A Polycomb group ring finger protein 6; PCGF6, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.61 E-value=8.5e-16 Score=107.78 Aligned_cols=64 Identities=28% Similarity=0.512 Sum_probs=54.3
Q ss_pred CCCCCCCCCCccccccccCCCCcEEc-ccCCccCHhHHHHHHHhcCCCCCCCcccccccccccccccC
Q 027545 19 VGNSANDAGGFECNICFELAQDPIVT-LCGHLFCWPCLYRWLHHHSHSQECPVCKAVVQEEKLVPLYG 85 (222)
Q Consensus 19 ~~~~~~~~~~~~C~ICl~~~~~pv~l-~CGH~FC~~Cl~~wl~~~~~~~~CPvCr~~v~~~~l~p~~~ 85 (222)
+.+.+...+.++|+||++.+.+|+++ +|||.||..||.+|++. ...||+||+.+..++++++..
T Consensus 6 ~~~~~~~~~~~~C~IC~~~~~~p~~~~~CgH~fC~~Ci~~~~~~---~~~CP~Cr~~~~~~~~~~~~~ 70 (72)
T 2djb_A 6 SGNLSELTPYILCSICKGYLIDATTITECLHTFCKSCIVRHFYY---SNRCPKCNIVVHQTQPLSGPS 70 (72)
T ss_dssp CCCCCCCCGGGSCTTTSSCCSSCEECSSSCCEECHHHHHHHHHH---CSSCTTTCCCCCSSCSCCCCS
T ss_pred hhhHhhcCCCCCCCCCChHHHCcCEECCCCCHHHHHHHHHHHHc---CCcCCCcCcccCcccccccCC
Confidence 44556667889999999999999997 99999999999999984 568999999999877665543
No 2
>2ecw_A Tripartite motif-containing protein 30; metal binding protein, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=99.59 E-value=5.8e-15 Score=105.47 Aligned_cols=68 Identities=25% Similarity=0.527 Sum_probs=57.6
Q ss_pred CCCCCCCCccccccccCCCCcEEcccCCccCHhHHHHHHHhc---CCCCCCCcccccccccccccccCCCC
Q 027545 21 NSANDAGGFECNICFELAQDPIVTLCGHLFCWPCLYRWLHHH---SHSQECPVCKAVVQEEKLVPLYGRGK 88 (222)
Q Consensus 21 ~~~~~~~~~~C~ICl~~~~~pv~l~CGH~FC~~Cl~~wl~~~---~~~~~CPvCr~~v~~~~l~p~~~~~~ 88 (222)
..+...+.++|+||++.+.+|++++|||.||..||.+|++.. .....||+||+.+..+++.+++...+
T Consensus 12 ~~~~~~~~~~C~IC~~~~~~p~~~~CgH~fC~~Ci~~~~~~~~~~~~~~~CP~Cr~~~~~~~~~~n~~l~~ 82 (85)
T 2ecw_A 12 VLEMIKEEVTCPICLELLKEPVSADCNHSFCRACITLNYESNRNTDGKGNCPVCRVPYPFGNLKPNLHVAN 82 (85)
T ss_dssp CCCCCCTTTSCTTTCSCCSSCEECTTSCCBCHHHHHHHHHHSBCTTSCBCCTTTCCCCCTTCCEECSCCCS
T ss_pred HHHhCccCCCCcCCChhhCcceeCCCCCHHHHHHHHHHHHhccCCCCCCCCCCCCCcCCHHhCCcCHHHHH
Confidence 344566789999999999999999999999999999999963 23679999999999888888776554
No 3
>2ysl_A Tripartite motif-containing protein 31; ring-type zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.57 E-value=2.3e-15 Score=105.30 Aligned_cols=60 Identities=27% Similarity=0.638 Sum_probs=51.2
Q ss_pred CCCCCCCCccccccccCCCCcEEcccCCccCHhHHHHHHHhcCCCCCCCccccccccccc
Q 027545 21 NSANDAGGFECNICFELAQDPIVTLCGHLFCWPCLYRWLHHHSHSQECPVCKAVVQEEKL 80 (222)
Q Consensus 21 ~~~~~~~~~~C~ICl~~~~~pv~l~CGH~FC~~Cl~~wl~~~~~~~~CPvCr~~v~~~~l 80 (222)
..+...+.++|+||++.+.+|++++|||.||..||.+|++.......||+||+.+..+++
T Consensus 13 ~~~~~~~~~~C~IC~~~~~~~~~~~CgH~fC~~Ci~~~~~~~~~~~~CP~Cr~~~~~~~~ 72 (73)
T 2ysl_A 13 FVNKLQEEVICPICLDILQKPVTIDCGHNFCLKCITQIGETSCGFFKCPLCKTSVRKNAI 72 (73)
T ss_dssp CCCCCCCCCBCTTTCSBCSSEEECTTCCEEEHHHHHHHCSSSCSCCCCSSSCCCCCCCCC
T ss_pred HHHhCccCCEeccCCcccCCeEEcCCCChhhHHHHHHHHHcCCCCCCCCCCCCcCCcccC
Confidence 345566789999999999999999999999999999999744456799999999886554
No 4
>2ecv_A Tripartite motif-containing protein 5; metal binding protein, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.57 E-value=7e-15 Score=105.03 Aligned_cols=68 Identities=31% Similarity=0.599 Sum_probs=57.1
Q ss_pred CCCCCCCCccccccccCCCCcEEcccCCccCHhHHHHHHHh---cCCCCCCCcccccccccccccccCCCC
Q 027545 21 NSANDAGGFECNICFELAQDPIVTLCGHLFCWPCLYRWLHH---HSHSQECPVCKAVVQEEKLVPLYGRGK 88 (222)
Q Consensus 21 ~~~~~~~~~~C~ICl~~~~~pv~l~CGH~FC~~Cl~~wl~~---~~~~~~CPvCr~~v~~~~l~p~~~~~~ 88 (222)
..+...+.++|+||++.+.+|+.++|||.||..|+.+|++. ......||+||+.+..+++.+++...+
T Consensus 12 ~~~~~~~~~~C~IC~~~~~~p~~~~CgH~fC~~Ci~~~~~~~~~~~~~~~CP~Cr~~~~~~~~~~n~~l~~ 82 (85)
T 2ecv_A 12 ILVNVKEEVTCPICLELLTQPLSLDCGHSFCQACLTANHKKSMLDKGESSCPVCRISYQPENIRPNRHVAN 82 (85)
T ss_dssp CCCCCCCCCCCTTTCSCCSSCBCCSSSCCBCTTHHHHHHHHHHHTTSCCCCTTTCCSSCSSSCCCSCCCCC
T ss_pred HHHHccCCCCCCCCCcccCCceeCCCCCHHHHHHHHHHHHHhhcCCCCCcCCCCCCccCHHhcCccHHHHH
Confidence 34456678999999999999999999999999999999985 123679999999999888877776554
No 5
>2d8t_A Dactylidin, ring finger protein 146; RNF146, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.56 E-value=1.3e-15 Score=106.49 Aligned_cols=58 Identities=26% Similarity=0.621 Sum_probs=49.6
Q ss_pred CCCCCCCccccccccCCCCcEEcccCCccCHhHHHHHHHhcCCCCCCCccccccccccccc
Q 027545 22 SANDAGGFECNICFELAQDPIVTLCGHLFCWPCLYRWLHHHSHSQECPVCKAVVQEEKLVP 82 (222)
Q Consensus 22 ~~~~~~~~~C~ICl~~~~~pv~l~CGH~FC~~Cl~~wl~~~~~~~~CPvCr~~v~~~~l~p 82 (222)
.....+..+|+||++.+.+++.++|||.||..||.+|++ ....||+||+.+..+.+..
T Consensus 9 ~~~~~~~~~C~IC~~~~~~~~~~~CgH~fC~~Ci~~~~~---~~~~CP~Cr~~~~~~~~~~ 66 (71)
T 2d8t_A 9 TAPSLTVPECAICLQTCVHPVSLPCKHVFCYLCVKGASW---LGKRCALCRQEIPEDFLDS 66 (71)
T ss_dssp CCSSSSCCBCSSSSSBCSSEEEETTTEEEEHHHHHHCTT---CSSBCSSSCCBCCHHHHSC
T ss_pred cccCCCCCCCccCCcccCCCEEccCCCHHHHHHHHHHHH---CCCcCcCcCchhCHhhccC
Confidence 344566789999999999999999999999999999998 4579999999998765543
No 6
>2yur_A Retinoblastoma-binding protein 6; P53-associated cellular protein of testis, proliferation potential-related protein, protein P2P-R; NMR {Homo sapiens}
Probab=99.54 E-value=9.2e-15 Score=103.16 Aligned_cols=57 Identities=25% Similarity=0.586 Sum_probs=48.5
Q ss_pred CCCCCCCCCCccccccccCCCCcEEcc-cCCccCHhHHHHHHHhcCCCCCCCccccccc
Q 027545 19 VGNSANDAGGFECNICFELAQDPIVTL-CGHLFCWPCLYRWLHHHSHSQECPVCKAVVQ 76 (222)
Q Consensus 19 ~~~~~~~~~~~~C~ICl~~~~~pv~l~-CGH~FC~~Cl~~wl~~~~~~~~CPvCr~~v~ 76 (222)
+.+.+...++++|+||++.+.+|++++ |||.||..||.+|++.. ....||+||+.+.
T Consensus 6 ~~~~~~~~~~~~C~IC~~~~~~p~~~~~CgH~fC~~Ci~~~~~~~-~~~~CP~Cr~~~~ 63 (74)
T 2yur_A 6 SGEDDPIPDELLCLICKDIMTDAVVIPCCGNSYCDECIRTALLES-DEHTCPTCHQNDV 63 (74)
T ss_dssp CSCCCCSCGGGSCSSSCCCCTTCEECSSSCCEECTTHHHHHHHHS-SSSCCSSSCCSSC
T ss_pred ccccccCCCCCCCcCCChHHhCCeEcCCCCCHHHHHHHHHHHHhc-CCCcCCCCCCcCC
Confidence 344556678899999999999999999 99999999999999854 2468999999754
No 7
>2ecy_A TNF receptor-associated factor 3; metal binding protein, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.53 E-value=7.5e-15 Score=101.12 Aligned_cols=58 Identities=28% Similarity=0.634 Sum_probs=49.7
Q ss_pred CCCCCCCCccccccccCCCCcEEcccCCccCHhHHHHHHHhcCCCCCCCccccccccccc
Q 027545 21 NSANDAGGFECNICFELAQDPIVTLCGHLFCWPCLYRWLHHHSHSQECPVCKAVVQEEKL 80 (222)
Q Consensus 21 ~~~~~~~~~~C~ICl~~~~~pv~l~CGH~FC~~Cl~~wl~~~~~~~~CPvCr~~v~~~~l 80 (222)
..+...+.++|+||++.+.+|+.++|||.||..||.+|++ .....||+||+.+..+++
T Consensus 8 ~~~~~~~~~~C~IC~~~~~~p~~~~CgH~fC~~Ci~~~~~--~~~~~CP~Cr~~~~~~~i 65 (66)
T 2ecy_A 8 FVKTVEDKYKCEKCHLVLCSPKQTECGHRFCESCMAALLS--SSSPKCTACQESIVKDKV 65 (66)
T ss_dssp SCCSCCCCEECTTTCCEESSCCCCSSSCCCCHHHHHHHHT--TSSCCCTTTCCCCCTTTC
T ss_pred hhhcCCcCCCCCCCChHhcCeeECCCCCHHHHHHHHHHHH--hCcCCCCCCCcCCChhhc
Confidence 3445567899999999999999999999999999999996 246789999999886654
No 8
>2csy_A Zinc finger protein 183-like 1; ring finger protein 161, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.53 E-value=8.2e-15 Score=104.87 Aligned_cols=54 Identities=31% Similarity=0.725 Sum_probs=47.5
Q ss_pred CCCCCCCCCccccccccCCCCcEEcccCCccCHhHHHHHHHhcCCCCCCCccccccc
Q 027545 20 GNSANDAGGFECNICFELAQDPIVTLCGHLFCWPCLYRWLHHHSHSQECPVCKAVVQ 76 (222)
Q Consensus 20 ~~~~~~~~~~~C~ICl~~~~~pv~l~CGH~FC~~Cl~~wl~~~~~~~~CPvCr~~v~ 76 (222)
++.+.....++|+||++.+.+|++++|||.||..||.+|++. ...||+||+.+.
T Consensus 7 ~~~~~~~~~~~C~IC~~~~~~p~~~~CgH~fC~~Ci~~~~~~---~~~CP~Cr~~~~ 60 (81)
T 2csy_A 7 GGSEEEEIPFRCFICRQAFQNPVVTKCRHYFCESCALEHFRA---TPRCYICDQPTG 60 (81)
T ss_dssp CCSSCCCCCSBCSSSCSBCCSEEECTTSCEEEHHHHHHHHHH---CSBCSSSCCBCC
T ss_pred CCcccCCCCCCCcCCCchhcCeeEccCCCHhHHHHHHHHHHC---CCcCCCcCcccc
Confidence 344556678999999999999999999999999999999984 568999999986
No 9
>1t1h_A Gspef-atpub14, armadillo repeat containing protein; ubiquitin ligase, E3 ligase, U-BOX,; NMR {Arabidopsis thaliana} SCOP: g.44.1.2
Probab=99.52 E-value=7.3e-15 Score=104.18 Aligned_cols=63 Identities=24% Similarity=0.517 Sum_probs=55.2
Q ss_pred CCCCCccccccccCCCCcEEcccCCccCHhHHHHHHHhcCCCCCCCcccccccccccccccCCCC
Q 027545 24 NDAGGFECNICFELAQDPIVTLCGHLFCWPCLYRWLHHHSHSQECPVCKAVVQEEKLVPLYGRGK 88 (222)
Q Consensus 24 ~~~~~~~C~ICl~~~~~pv~l~CGH~FC~~Cl~~wl~~~~~~~~CPvCr~~v~~~~l~p~~~~~~ 88 (222)
...+++.|+||++.+.+|++++|||+||..||.+|++. +...||+||+.+..+++.+++...+
T Consensus 4 ~~~~~~~C~IC~~~~~~Pv~~~CgH~fc~~Ci~~~~~~--~~~~CP~C~~~~~~~~l~~n~~l~~ 66 (78)
T 1t1h_A 4 EFPEYFRCPISLELMKDPVIVSTGQTYERSSIQKWLDA--GHKTCPKSQETLLHAGLTPNYVLKS 66 (78)
T ss_dssp CCSSSSSCTTTSCCCSSEEEETTTEEEEHHHHHHHHTT--TCCBCTTTCCBCSSCCCEECTTTHH
T ss_pred CCcccCCCCCccccccCCEEcCCCCeecHHHHHHHHHH--CcCCCCCCcCCCChhhCccCHHHHH
Confidence 45678999999999999999999999999999999983 3678999999999888888876544
No 10
>3ng2_A RNF4, snurf, ring finger protein 4; ring domain, E3 ligase, ubiquitylation, sumoylation, zinc-FI metal binding protein; 1.80A {Rattus norvegicus}
Probab=99.52 E-value=2.7e-15 Score=104.26 Aligned_cols=58 Identities=31% Similarity=0.841 Sum_probs=51.0
Q ss_pred CCCCCccccccccCCCCc-------EEcccCCccCHhHHHHHHHhcCCCCCCCccccccccccccccc
Q 027545 24 NDAGGFECNICFELAQDP-------IVTLCGHLFCWPCLYRWLHHHSHSQECPVCKAVVQEEKLVPLY 84 (222)
Q Consensus 24 ~~~~~~~C~ICl~~~~~p-------v~l~CGH~FC~~Cl~~wl~~~~~~~~CPvCr~~v~~~~l~p~~ 84 (222)
..+++.+|+||++.+.++ +.++|||.||..||.+|++. ...||+||+.+..+++.++|
T Consensus 6 ~~~~~~~C~IC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~---~~~CP~Cr~~~~~~~~~~~~ 70 (71)
T 3ng2_A 6 RPSGTVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKN---ANTCPTCRKKINHKRYHPIY 70 (71)
T ss_dssp CCTTCCBCTTTCCBHHHHHTTTCCEEECTTSCEEEHHHHHHHHHH---CSBCTTTCCBCCCCSCCCCC
T ss_pred CCCCCCCCcccChhhhccccccCCeEeCCCCChHhHHHHHHHHHc---CCCCCCCCCccChhheeecc
Confidence 345678899999999887 88999999999999999984 46999999999988888876
No 11
>2ysj_A Tripartite motif-containing protein 31; ring-type zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.52 E-value=2.2e-14 Score=97.77 Aligned_cols=52 Identities=27% Similarity=0.651 Sum_probs=45.1
Q ss_pred CCCCCCCCCccccccccCCCCcEEcccCCccCHhHHHHHHHhcCCCCCCCcc
Q 027545 20 GNSANDAGGFECNICFELAQDPIVTLCGHLFCWPCLYRWLHHHSHSQECPVC 71 (222)
Q Consensus 20 ~~~~~~~~~~~C~ICl~~~~~pv~l~CGH~FC~~Cl~~wl~~~~~~~~CPvC 71 (222)
...+...++++|+||++.+.+|++++|||.||..||.+|++.......||+|
T Consensus 12 ~~~~~~~~~~~C~IC~~~~~~p~~~~CgH~fC~~Ci~~~~~~~~~~~~CP~C 63 (63)
T 2ysj_A 12 QFVNKLQEEVICPICLDILQKPVTIDCGHNFCLKCITQIGETSCGFFKCPLC 63 (63)
T ss_dssp CCCCCCCCCCBCTTTCSBCSSCEECTTSSEECHHHHHHHHHHCSSCCCCSCC
T ss_pred HHHHhCccCCCCCcCCchhCCeEEeCCCCcchHHHHHHHHHcCCCCCcCcCC
Confidence 3445567789999999999999999999999999999999864456789998
No 12
>2egp_A Tripartite motif-containing protein 34; ZF-C3HC4 domain, tripartite motif protein 34, interferon- responsive finger protein 1; NMR {Homo sapiens}
Probab=99.52 E-value=4.1e-15 Score=105.40 Aligned_cols=67 Identities=28% Similarity=0.535 Sum_probs=56.5
Q ss_pred CCCCCCCccccccccCCCCcEEcccCCccCHhHHHHHHHhc----CCCCCCCcccccccccccccccCCCC
Q 027545 22 SANDAGGFECNICFELAQDPIVTLCGHLFCWPCLYRWLHHH----SHSQECPVCKAVVQEEKLVPLYGRGK 88 (222)
Q Consensus 22 ~~~~~~~~~C~ICl~~~~~pv~l~CGH~FC~~Cl~~wl~~~----~~~~~CPvCr~~v~~~~l~p~~~~~~ 88 (222)
.+...++++|+||++.+.+|++++|||.||..||.+|++.. .....||+||+.+..+++.+++...+
T Consensus 6 ~~~~~~~~~C~IC~~~~~~p~~l~CgH~fC~~Ci~~~~~~~~~~~~~~~~CP~Cr~~~~~~~l~~n~~l~~ 76 (79)
T 2egp_A 6 SGNVQEEVTCPICLELLTEPLSLDCGHSLCRACITVSNKEAVTSMGGKSSCPVCGISYSFEHLQANQHLAN 76 (79)
T ss_dssp SCCCCCCCEETTTTEECSSCCCCSSSCCCCHHHHSCCCCCCSSSCCCCCCCSSSCCCCCSSGGGTCSSSCC
T ss_pred HhhcccCCCCcCCCcccCCeeECCCCCHHHHHHHHHHHHhcccCCCCCCcCCCCCCcCCHhhCCcCHHHHH
Confidence 34456789999999999999999999999999999999842 22679999999999888888776554
No 13
>2ect_A Ring finger protein 126; metal binding protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=99.51 E-value=1.7e-14 Score=102.31 Aligned_cols=61 Identities=28% Similarity=0.630 Sum_probs=49.5
Q ss_pred CCCCCCCCCccccccccCCCCc---EEcccCCccCHhHHHHHHHhcCCCCCCCcccccccccccccc
Q 027545 20 GNSANDAGGFECNICFELAQDP---IVTLCGHLFCWPCLYRWLHHHSHSQECPVCKAVVQEEKLVPL 83 (222)
Q Consensus 20 ~~~~~~~~~~~C~ICl~~~~~p---v~l~CGH~FC~~Cl~~wl~~~~~~~~CPvCr~~v~~~~l~p~ 83 (222)
++.+......+|+||++.+.++ ++++|||.||..||.+|++ ....||+||+.+..+++.++
T Consensus 7 ~~~~~~~~~~~C~IC~~~~~~~~~~~~~~C~H~fc~~Ci~~~~~---~~~~CP~Cr~~~~~~~~~~~ 70 (78)
T 2ect_A 7 GTEEHVGSGLECPVCKEDYALGESVRQLPCNHLFHDSCIVPWLE---QHDSCPVCRKSLTGQNTATN 70 (78)
T ss_dssp CCCTTSSSSCCCTTTTSCCCTTSCEEECTTSCEEETTTTHHHHT---TTCSCTTTCCCCCCSCSCCC
T ss_pred CCcccCCCCCCCeeCCccccCCCCEEEeCCCCeecHHHHHHHHH---cCCcCcCcCCccCCcccCCC
Confidence 3445556788999999998765 5579999999999999998 34699999999987666554
No 14
>3ztg_A E3 ubiquitin-protein ligase RBBP6; PACT, U-BOX, mRNA processing, mRNA splicing; NMR {Homo sapiens}
Probab=99.51 E-value=1.8e-14 Score=105.27 Aligned_cols=65 Identities=22% Similarity=0.477 Sum_probs=53.3
Q ss_pred CCCCCCCCccccccccCCCCcEEcc-cCCccCHhHHHHHHHhcCCCCCCCcccccc-cccccccccCC
Q 027545 21 NSANDAGGFECNICFELAQDPIVTL-CGHLFCWPCLYRWLHHHSHSQECPVCKAVV-QEEKLVPLYGR 86 (222)
Q Consensus 21 ~~~~~~~~~~C~ICl~~~~~pv~l~-CGH~FC~~Cl~~wl~~~~~~~~CPvCr~~v-~~~~l~p~~~~ 86 (222)
+.+...+++.|+||++.+.+|++++ |||+||..||.+|+... ....||+||+.+ ..+.+.+++..
T Consensus 6 ~~~~~~~~~~C~IC~~~~~~p~~~~~CgH~fC~~Ci~~~~~~~-~~~~CP~Cr~~~~~~~~~~~n~~l 72 (92)
T 3ztg_A 6 EDDPIPDELLCLICKDIMTDAVVIPCCGNSYCDECIRTALLES-DEHTCPTCHQNDVSPDALIANKFL 72 (92)
T ss_dssp SCCCCCTTTEETTTTEECSSCEECTTTCCEECHHHHHHHHHHC-TTCCCTTTCCSSCCTTSCEECHHH
T ss_pred ccccCCcCCCCCCCChhhcCceECCCCCCHHHHHHHHHHHHhc-CCCcCcCCCCcCCCccccCcCHHH
Confidence 3455677899999999999999999 99999999999999853 347999999997 45566665543
No 15
>2ct2_A Tripartite motif protein 32; zinc-finger protein HT2A, TAT- interacting protein, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.50 E-value=2.5e-14 Score=103.16 Aligned_cols=60 Identities=30% Similarity=0.655 Sum_probs=50.7
Q ss_pred CCCCCCCCccccccccCCCC----cEEcccCCccCHhHHHHHHHhcCCCCCCCccccccccccc
Q 027545 21 NSANDAGGFECNICFELAQD----PIVTLCGHLFCWPCLYRWLHHHSHSQECPVCKAVVQEEKL 80 (222)
Q Consensus 21 ~~~~~~~~~~C~ICl~~~~~----pv~l~CGH~FC~~Cl~~wl~~~~~~~~CPvCr~~v~~~~l 80 (222)
+.+...+.++|+||++.+.+ |+.++|||.||..||.+|++.+.....||+||+.+..+++
T Consensus 8 ~~~~~~~~~~C~IC~~~~~~~~~~~~~~~CgH~fC~~Ci~~~~~~~~~~~~CP~Cr~~~~~~~i 71 (88)
T 2ct2_A 8 NLDALREVLECPICMESFTEEQLRPKLLHCGHTICRQCLEKLLASSINGVRCPFCSKITRITSL 71 (88)
T ss_dssp SCCCCCSCCBCTTTCCBCCTTSSCEEECSSSCEEEHHHHHHHHHHCSSCBCCTTTCCCBCCSST
T ss_pred ChhhccCCCCCccCCccccccCCCeEECCCCChhhHHHHHHHHHcCCCCcCCCCCCCcccchhH
Confidence 34556677899999999998 9999999999999999999965446799999998876543
No 16
>1wgm_A Ubiquitin conjugation factor E4A; ubiquitinating enzyme, KIAA0126, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.44.1.2
Probab=99.47 E-value=4.5e-14 Score=105.50 Aligned_cols=66 Identities=18% Similarity=0.143 Sum_probs=57.3
Q ss_pred CCCCCCCccccccccCCCCcEEcccC-CccCHhHHHHHHHhcCCCCCCCcccccccccccccccCCCCCC
Q 027545 22 SANDAGGFECNICFELAQDPIVTLCG-HLFCWPCLYRWLHHHSHSQECPVCKAVVQEEKLVPLYGRGKTQ 90 (222)
Q Consensus 22 ~~~~~~~~~C~ICl~~~~~pv~l~CG-H~FC~~Cl~~wl~~~~~~~~CPvCr~~v~~~~l~p~~~~~~~~ 90 (222)
.....+++.|+||++.++|||+++|| |+||..||.+|+.. ...||+|++.+..++++|+..+...+
T Consensus 16 ~~~~p~~~~CpI~~~~m~dPV~~~cG~htf~r~cI~~~l~~---~~~cP~~~~~l~~~~L~pn~~Lk~~I 82 (98)
T 1wgm_A 16 YADACDEFLDPIMSTLMCDPVVLPSSRVTVDRSTIARHLLS---DQTDPFNRSPLTMDQIRPNTELKEKI 82 (98)
T ss_dssp CCSCCTTTBCTTTCSBCSSEEECTTTCCEEEHHHHHHHTTT---SCBCTTTCSBCCTTTSEECHHHHHHH
T ss_pred hhcCcHhcCCcCccccccCCeECCCCCeEECHHHHHHHHHh---CCCCCCCCCCCChhhceEcHHHHHHH
Confidence 34456789999999999999999999 99999999999983 56899999999999999987765543
No 17
>2ea6_A Ring finger protein 4; RNF4, RES4-26, ring domain, zinc- binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.47 E-value=1.9e-14 Score=99.05 Aligned_cols=53 Identities=30% Similarity=0.789 Sum_probs=45.5
Q ss_pred CCCCCCCccccccccCCCCc-------EEcccCCccCHhHHHHHHHhcCCCCCCCcccccccc
Q 027545 22 SANDAGGFECNICFELAQDP-------IVTLCGHLFCWPCLYRWLHHHSHSQECPVCKAVVQE 77 (222)
Q Consensus 22 ~~~~~~~~~C~ICl~~~~~p-------v~l~CGH~FC~~Cl~~wl~~~~~~~~CPvCr~~v~~ 77 (222)
.....+..+|+||++.+.++ +.++|||.||..||.+|++. ...||+||+.+..
T Consensus 9 ~~~~~~~~~C~IC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~---~~~CP~Cr~~~~~ 68 (69)
T 2ea6_A 9 GLRPSGTVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKN---ANTCPTCRKKINH 68 (69)
T ss_dssp CCCTTCCCCCTTTCCCHHHHTTTTCCEEECSSSCEEEHHHHHHHHHH---CSSCTTTCCCCCC
T ss_pred ccCCCCCCCCcccCccccccccccCCeEeCCCCChhcHHHHHHHHHc---CCCCCCCCCccCc
Confidence 34556778999999999877 88999999999999999994 4689999998763
No 18
>2kr4_A Ubiquitin conjugation factor E4 B; U-BOX, UFD2, ring, E3 ligase, UBL conjugation pathway; NMR {Mus musculus}
Probab=99.46 E-value=3.8e-14 Score=103.06 Aligned_cols=64 Identities=19% Similarity=0.247 Sum_probs=55.9
Q ss_pred CCCCCCCccccccccCCCCcEEcccCCccCHhHHHHHHHhcCCCCCCCcccccccccccccccCCCC
Q 027545 22 SANDAGGFECNICFELAQDPIVTLCGHLFCWPCLYRWLHHHSHSQECPVCKAVVQEEKLVPLYGRGK 88 (222)
Q Consensus 22 ~~~~~~~~~C~ICl~~~~~pv~l~CGH~FC~~Cl~~wl~~~~~~~~CPvCr~~v~~~~l~p~~~~~~ 88 (222)
.....+.+.|+||++.+++||+++|||+||..||.+|+.. ...||+|++.+..++++|+....+
T Consensus 8 ~~~~p~~~~CpI~~~~m~dPV~~~cGhtf~r~~I~~~l~~---~~~cP~~~~~l~~~~l~pn~~L~~ 71 (85)
T 2kr4_A 8 YSDAPDEFRDPLMDTLMTDPVRLPSGTVMDRSIILRHLLN---SPTDPFNRQMLTESMLEPVPELKE 71 (85)
T ss_dssp CTTCCTTTBCTTTCSBCSSEEECTTSCEEEHHHHHHHHHH---CSBCTTTCCBCCGGGCEECHHHHH
T ss_pred hhcCchheECcccCchhcCCeECCCCCEECHHHHHHHHhc---CCCCCCCcCCCChHhcchHHHHHH
Confidence 3455678999999999999999999999999999999984 468999999999989988876543
No 19
>2xeu_A Ring finger protein 4; transcription, zinc-finger, metal-binding; HET: SUC; 1.50A {Homo sapiens}
Probab=99.46 E-value=1.5e-14 Score=98.20 Aligned_cols=55 Identities=31% Similarity=0.831 Sum_probs=49.3
Q ss_pred CCccccccccCCCCc-------EEcccCCccCHhHHHHHHHhcCCCCCCCccccccccccccccc
Q 027545 27 GGFECNICFELAQDP-------IVTLCGHLFCWPCLYRWLHHHSHSQECPVCKAVVQEEKLVPLY 84 (222)
Q Consensus 27 ~~~~C~ICl~~~~~p-------v~l~CGH~FC~~Cl~~wl~~~~~~~~CPvCr~~v~~~~l~p~~ 84 (222)
++.+|+||++.+.++ +.++|||.||..|+.+|++. ...||+||+.+..+++.++|
T Consensus 2 ~~~~C~IC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~---~~~CP~Cr~~~~~~~~~~~~ 63 (64)
T 2xeu_A 2 AMVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKN---ANTCPTCRKKINHKRYHPIY 63 (64)
T ss_dssp CCCBCTTTCCBHHHHHHTTCCEEEETTSCEEEHHHHHHHHHH---CSBCTTTCCBCTTTCEEECC
T ss_pred CCCCCCccChhhhCccccCCCEEeCCCCCchhHHHHHHHHHc---CCCCCCCCccCCccceeeee
Confidence 467899999998876 78899999999999999994 56999999999999988876
No 20
>2ecn_A Ring finger protein 141; RNF141, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.44 E-value=4.8e-14 Score=97.91 Aligned_cols=56 Identities=25% Similarity=0.712 Sum_probs=47.8
Q ss_pred CCCCCCCCccccccccCCCCcEEcccCCccCHhHHHHHHHhcCCCCCCCccccccccccc
Q 027545 21 NSANDAGGFECNICFELAQDPIVTLCGHLFCWPCLYRWLHHHSHSQECPVCKAVVQEEKL 80 (222)
Q Consensus 21 ~~~~~~~~~~C~ICl~~~~~pv~l~CGH~FC~~Cl~~wl~~~~~~~~CPvCr~~v~~~~l 80 (222)
+.+...+..+|+||++.+.+ +.++|||.||..||.+|++ ....||+||+.+...+.
T Consensus 8 ~~~~~~~~~~C~IC~~~~~~-~~~~CgH~fc~~Ci~~~~~---~~~~CP~Cr~~~~~~~~ 63 (70)
T 2ecn_A 8 RVKQLTDEEECCICMDGRAD-LILPCAHSFCQKCIDKWSD---RHRNCPICRLQMTGANE 63 (70)
T ss_dssp CCCCCCCCCCCSSSCCSCCS-EEETTTEEECHHHHHHSSC---CCSSCHHHHHCTTCCCC
T ss_pred hhhcCCCCCCCeeCCcCccC-cccCCCCcccHHHHHHHHH---CcCcCCCcCCcccCCCc
Confidence 34455677899999999999 8899999999999999998 56799999999885543
No 21
>2ecj_A Tripartite motif-containing protein 39; TRIM39, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.43 E-value=1.1e-13 Score=92.30 Aligned_cols=51 Identities=33% Similarity=0.883 Sum_probs=43.6
Q ss_pred CCCCCCCCccccccccCCCCcEEcccCCccCHhHHHHHHHhcCCCCCCCcc
Q 027545 21 NSANDAGGFECNICFELAQDPIVTLCGHLFCWPCLYRWLHHHSHSQECPVC 71 (222)
Q Consensus 21 ~~~~~~~~~~C~ICl~~~~~pv~l~CGH~FC~~Cl~~wl~~~~~~~~CPvC 71 (222)
..+...+.++|+||++.+.+|++++|||+||..||.+|++.......||+|
T Consensus 8 ~~~~~~~~~~C~IC~~~~~~p~~~~CgH~fC~~Ci~~~~~~~~~~~~CP~C 58 (58)
T 2ecj_A 8 ALENLQVEASCSVCLEYLKEPVIIECGHNFCKACITRWWEDLERDFPCPVC 58 (58)
T ss_dssp CSSCSCCCCBCSSSCCBCSSCCCCSSCCCCCHHHHHHHTTSSCCSCCCSCC
T ss_pred HhhccccCCCCccCCcccCccEeCCCCCccCHHHHHHHHHhcCCCCCCCCC
Confidence 445566788999999999999999999999999999997643356899998
No 22
>2kre_A Ubiquitin conjugation factor E4 B; U-box domain, E3 ubiquitin ligase, E4 polyubiquitin chain EL factor, phosphoprotein, UBL conjugation pathway; NMR {Homo sapiens} PDB: 3l1x_A 3l1z_B
Probab=99.43 E-value=1e-13 Score=103.95 Aligned_cols=65 Identities=18% Similarity=0.240 Sum_probs=56.9
Q ss_pred CCCCCCCccccccccCCCCcEEcccCCccCHhHHHHHHHhcCCCCCCCcccccccccccccccCCCCC
Q 027545 22 SANDAGGFECNICFELAQDPIVTLCGHLFCWPCLYRWLHHHSHSQECPVCKAVVQEEKLVPLYGRGKT 89 (222)
Q Consensus 22 ~~~~~~~~~C~ICl~~~~~pv~l~CGH~FC~~Cl~~wl~~~~~~~~CPvCr~~v~~~~l~p~~~~~~~ 89 (222)
.....+.+.|+||++.++|||+++|||+||..||.+|+. ....||+|+..+..++++|+......
T Consensus 23 ~~~~p~~~~CpI~~~~m~dPV~~~cGhtf~r~~I~~~l~---~~~~cP~~~~~l~~~~L~pn~~Lk~~ 87 (100)
T 2kre_A 23 YSDAPDEFRDPLMDTLMTDPVRLPSGTIMDRSIILRHLL---NSPTDPFNRQTLTESMLEPVPELKEQ 87 (100)
T ss_dssp CSSCSTTTBCTTTCSBCSSEEEETTTEEEEHHHHHHHTT---SCSBCSSSCCBCCTTSSEECHHHHHH
T ss_pred hccCcHhhCCcCccCcccCCeECCCCCEEchHHHHHHHH---cCCCCCCCCCCCChhhceECHHHHHH
Confidence 345567899999999999999999999999999999998 35789999999999999998765543
No 23
>3lrq_A E3 ubiquitin-protein ligase TRIM37; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; HET: MSE; 2.29A {Homo sapiens}
Probab=99.41 E-value=5.5e-14 Score=104.82 Aligned_cols=62 Identities=34% Similarity=0.730 Sum_probs=53.4
Q ss_pred CCCCCCccccccccCCCCcEE-cccCCccCHhHHHHHHHhcCCCCCCCcccccccccccccccCC
Q 027545 23 ANDAGGFECNICFELAQDPIV-TLCGHLFCWPCLYRWLHHHSHSQECPVCKAVVQEEKLVPLYGR 86 (222)
Q Consensus 23 ~~~~~~~~C~ICl~~~~~pv~-l~CGH~FC~~Cl~~wl~~~~~~~~CPvCr~~v~~~~l~p~~~~ 86 (222)
....+.+.|+||++.+.+|+. ++|||.||..||.+|++.. ...||+||+.+..+++++++..
T Consensus 17 ~~l~~~~~C~IC~~~~~~p~~~~~CgH~FC~~Ci~~~~~~~--~~~CP~Cr~~~~~~~l~~~~~~ 79 (100)
T 3lrq_A 17 ESIAEVFRCFICMEKLRDARLCPHCSKLCCFSCIRRWLTEQ--RAQCPHCRAPLQLRELVNCRWA 79 (100)
T ss_dssp HHHHHHTBCTTTCSBCSSEEECTTTCCEEEHHHHHHHHHHT--CSBCTTTCCBCCGGGCEECTTH
T ss_pred ccCCCCCCCccCCccccCccccCCCCChhhHHHHHHHHHHC--cCCCCCCCCcCCHHHhHhhHHH
Confidence 344577899999999999999 9999999999999999953 2689999999998888776543
No 24
>1g25_A CDK-activating kinase assembly factor MAT1; ring finger (C3HC4), metal binding protein; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=99.40 E-value=1.5e-13 Score=94.31 Aligned_cols=57 Identities=21% Similarity=0.538 Sum_probs=48.6
Q ss_pred CCcccccccc-CCCCc----EEcccCCccCHhHHHHHHHhcCCCCCCCcccccccccccccccC
Q 027545 27 GGFECNICFE-LAQDP----IVTLCGHLFCWPCLYRWLHHHSHSQECPVCKAVVQEEKLVPLYG 85 (222)
Q Consensus 27 ~~~~C~ICl~-~~~~p----v~l~CGH~FC~~Cl~~wl~~~~~~~~CPvCr~~v~~~~l~p~~~ 85 (222)
++..|+||++ .+.+| +.++|||.||..||.+|+.. ....||+||+.+..+++.+++.
T Consensus 2 ~~~~C~IC~~~~~~~~~~~~~~~~CgH~fC~~Ci~~~~~~--~~~~CP~Cr~~~~~~~~~~~~~ 63 (65)
T 1g25_A 2 DDQGCPRCKTTKYRNPSLKLMVNVCGHTLCESCVDLLFVR--GAGNCPECGTPLRKSNFRVQLF 63 (65)
T ss_dssp CTTCCSTTTTHHHHCSSCCEEECTTCCCEEHHHHHHHHHT--TSSSCTTTCCCCSSCCCEEECC
T ss_pred CCCcCCcCCCCccCCCccCeecCCCCCHhHHHHHHHHHHc--CCCcCCCCCCccccccceeecc
Confidence 4678999999 88888 56899999999999999873 4578999999999888877654
No 25
>1jm7_A BRCA1, breast cancer type 1 susceptibility protein; ring finger, zinc-binding protein, heterodimer, ubiquitin ligase, antitumor; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=99.40 E-value=1.9e-13 Score=102.87 Aligned_cols=61 Identities=31% Similarity=0.746 Sum_probs=52.4
Q ss_pred CCccccccccCCCCcEEcccCCccCHhHHHHHHHhcCCCCCCCcccccccccccccccCCC
Q 027545 27 GGFECNICFELAQDPIVTLCGHLFCWPCLYRWLHHHSHSQECPVCKAVVQEEKLVPLYGRG 87 (222)
Q Consensus 27 ~~~~C~ICl~~~~~pv~l~CGH~FC~~Cl~~wl~~~~~~~~CPvCr~~v~~~~l~p~~~~~ 87 (222)
+.++|+||++.+.+|+.++|||.||..||.+|+..+.....||+||+.+..+.+.++....
T Consensus 20 ~~~~C~IC~~~~~~p~~~~CgH~fC~~Ci~~~~~~~~~~~~CP~Cr~~~~~~~~~~~~~l~ 80 (112)
T 1jm7_A 20 KILECPICLELIKEPVSTKCDHIFCKFCMLKLLNQKKGPSQCPLCKNDITKRSLQESTRFS 80 (112)
T ss_dssp HHTSCSSSCCCCSSCCBCTTSCCCCSHHHHHHHHSSSSSCCCTTTSCCCCTTTCBCCCSSS
T ss_pred CCCCCcccChhhcCeEECCCCCHHHHHHHHHHHHhCCCCCCCcCCCCcCCHhhcCccHHHH
Confidence 4678999999999999999999999999999999654456899999999987777765543
No 26
>2ep4_A Ring finger protein 24; zinc binding, ubiquitin, E3 enzyme, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.39 E-value=2.6e-13 Score=95.19 Aligned_cols=55 Identities=27% Similarity=0.594 Sum_probs=44.6
Q ss_pred CCCCCCCCCccccccccCCCCcE---EcccCCccCHhHHHHHHHhcCCCCCCCcccccccc
Q 027545 20 GNSANDAGGFECNICFELAQDPI---VTLCGHLFCWPCLYRWLHHHSHSQECPVCKAVVQE 77 (222)
Q Consensus 20 ~~~~~~~~~~~C~ICl~~~~~pv---~l~CGH~FC~~Cl~~wl~~~~~~~~CPvCr~~v~~ 77 (222)
++......+.+|+||++.+.++. +++|||.||..||.+|++. ...||+||+.+..
T Consensus 7 ~~~~~~~~~~~C~IC~~~~~~~~~~~~~~C~H~f~~~Ci~~~~~~---~~~CP~Cr~~~~~ 64 (74)
T 2ep4_A 7 GKVKELNLHELCAVCLEDFKPRDELGICPCKHAFHRKCLIKWLEV---RKVCPLCNMPVLQ 64 (74)
T ss_dssp SCCCCCCCSCBCSSSCCBCCSSSCEEEETTTEEEEHHHHHHHHHH---CSBCTTTCCBCSS
T ss_pred cccccCCCCCCCcCCCcccCCCCcEEEcCCCCEecHHHHHHHHHc---CCcCCCcCccccc
Confidence 34455667789999999987663 3599999999999999995 3489999998763
No 27
>2y43_A E3 ubiquitin-protein ligase RAD18; DNA repair, metal-binding, translesion synthesis, UB conjugation pathway; 1.80A {Homo sapiens}
Probab=99.38 E-value=3.7e-14 Score=105.15 Aligned_cols=59 Identities=27% Similarity=0.583 Sum_probs=51.2
Q ss_pred CCCCccccccccCCCCcEEc-ccCCccCHhHHHHHHHhcCCCCCCCcccccccccccccccCC
Q 027545 25 DAGGFECNICFELAQDPIVT-LCGHLFCWPCLYRWLHHHSHSQECPVCKAVVQEEKLVPLYGR 86 (222)
Q Consensus 25 ~~~~~~C~ICl~~~~~pv~l-~CGH~FC~~Cl~~wl~~~~~~~~CPvCr~~v~~~~l~p~~~~ 86 (222)
..+.++|+||++.+.+|+++ +|||.||..||.+|+. ....||+||+.+..+++.+++..
T Consensus 19 ~~~~~~C~IC~~~~~~p~~~~~CgH~fC~~Ci~~~~~---~~~~CP~Cr~~~~~~~l~~n~~l 78 (99)
T 2y43_A 19 IDDLLRCGICFEYFNIAMIIPQCSHNYCSLCIRKFLS---YKTQCPTCCVTVTEPDLKNNRIL 78 (99)
T ss_dssp HHHHTBCTTTCSBCSSEEECTTTCCEEEHHHHHHHHT---TCCBCTTTCCBCCGGGCEECHHH
T ss_pred CCCCCCcccCChhhCCcCEECCCCCHhhHHHHHHHHH---CCCCCCCCCCcCChhhCCcCHHH
Confidence 34678999999999999998 8999999999999998 45699999999998777776543
No 28
>2kiz_A E3 ubiquitin-protein ligase arkadia; ring-H2 finger, E3 ligase, Zn binding domain, metal zinc, zinc-finger, metal binding protein; NMR {Homo sapiens}
Probab=99.36 E-value=5.5e-13 Score=92.24 Aligned_cols=53 Identities=26% Similarity=0.733 Sum_probs=43.5
Q ss_pred CCCCCCCccccccccCCC---CcEEcccCCccCHhHHHHHHHhcCCCCCCCcccccccc
Q 027545 22 SANDAGGFECNICFELAQ---DPIVTLCGHLFCWPCLYRWLHHHSHSQECPVCKAVVQE 77 (222)
Q Consensus 22 ~~~~~~~~~C~ICl~~~~---~pv~l~CGH~FC~~Cl~~wl~~~~~~~~CPvCr~~v~~ 77 (222)
........+|+||++.+. .++.++|||.||..||.+|++. ...||+||+.+..
T Consensus 8 ~~~~~~~~~C~IC~~~~~~~~~~~~~~C~H~fc~~Ci~~~~~~---~~~CP~Cr~~~~~ 63 (69)
T 2kiz_A 8 GTEEDTEEKCTICLSILEEGEDVRRLPCMHLFHQVCVDQWLIT---NKKCPICRVDIEA 63 (69)
T ss_dssp CCSTTCCCSBTTTTBCCCSSSCEEECTTSCEEEHHHHHHHHHH---CSBCTTTCSBSCS
T ss_pred cCcCCCCCCCeeCCccccCCCcEEEeCCCCHHHHHHHHHHHHc---CCCCcCcCccccC
Confidence 344556788999999874 4577899999999999999995 3579999998874
No 29
>2yu4_A E3 SUMO-protein ligase NSE2; SP-ring domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.36 E-value=4.7e-13 Score=98.85 Aligned_cols=66 Identities=21% Similarity=0.488 Sum_probs=55.5
Q ss_pred CCCCccccccccCCCCcEEcc-cCCccCHhHHHHHHHhc---CCCCCCCc--cccc-ccccccccccCCCCCC
Q 027545 25 DAGGFECNICFELAQDPIVTL-CGHLFCWPCLYRWLHHH---SHSQECPV--CKAV-VQEEKLVPLYGRGKTQ 90 (222)
Q Consensus 25 ~~~~~~C~ICl~~~~~pv~l~-CGH~FC~~Cl~~wl~~~---~~~~~CPv--Cr~~-v~~~~l~p~~~~~~~~ 90 (222)
...++.|+||++.+.+||+++ |||+||..||.+|+... .....||+ |++. +..++++|+..+...+
T Consensus 4 ~~~~~~CPI~~~~~~dPV~~~~cGh~f~r~cI~~~l~~~~~~~~~~~CP~tgc~~~~l~~~~L~pn~~L~~~I 76 (94)
T 2yu4_A 4 GSSGFTCPITKEEMKKPVKNKVCGHTYEEDAIVRMIESRQKRKKKAYCPQIGCSHTDIRKSDLIQDEALRRAI 76 (94)
T ss_dssp CSSCCBCTTTCSBCSSEEEESSSCCEEEHHHHHHHHHHHHTTTCCBCCCSTTCCCCCBCGGGEEECHHHHHHH
T ss_pred CCcEeECcCcCchhcCCEEcCCCCCeecHHHHHHHHHHccCcCCCCCCCcCcCcccccCHhhCcCCHHHHHHH
Confidence 456799999999999999995 99999999999999853 23568999 9887 8888999987765543
No 30
>3fl2_A E3 ubiquitin-protein ligase UHRF1; cell cycle, DNA damage, DNA repair, ring finger domain, metal binding, DNA replication; 1.75A {Homo sapiens}
Probab=99.35 E-value=3.4e-13 Score=103.90 Aligned_cols=57 Identities=30% Similarity=0.584 Sum_probs=47.8
Q ss_pred CCCccccccccCCCCcEEcccCCccCHhHHHHHHHhcCCCCCCCcccccccc-ccccccc
Q 027545 26 AGGFECNICFELAQDPIVTLCGHLFCWPCLYRWLHHHSHSQECPVCKAVVQE-EKLVPLY 84 (222)
Q Consensus 26 ~~~~~C~ICl~~~~~pv~l~CGH~FC~~Cl~~wl~~~~~~~~CPvCr~~v~~-~~l~p~~ 84 (222)
.+.+.|+||++.+.+|++++|||.||..||.+|+.. ....||+||+.+.. ..+.+++
T Consensus 50 ~~~~~C~IC~~~~~~p~~~~CgH~fC~~Ci~~~~~~--~~~~CP~Cr~~~~~~~~~~~n~ 107 (124)
T 3fl2_A 50 EETFQCICCQELVFRPITTVCQHNVCKDCLDRSFRA--QVFSCPACRYDLGRSYAMQVNQ 107 (124)
T ss_dssp HHHTBCTTTSSBCSSEEECTTSCEEEHHHHHHHHHT--TCCBCTTTCCBCCTTCCCCCCH
T ss_pred ccCCCCCcCChHHcCcEEeeCCCcccHHHHHHHHhH--CcCCCCCCCccCCCCCCCCCCH
Confidence 456889999999999999999999999999999983 45699999999876 4444443
No 31
>1x4j_A Ring finger protein 38; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.35 E-value=4.7e-13 Score=94.25 Aligned_cols=52 Identities=25% Similarity=0.606 Sum_probs=43.9
Q ss_pred CCCCCCccccccccCCCCc---EEcccCCccCHhHHHHHHHhcCCCCCCCcccccccc
Q 027545 23 ANDAGGFECNICFELAQDP---IVTLCGHLFCWPCLYRWLHHHSHSQECPVCKAVVQE 77 (222)
Q Consensus 23 ~~~~~~~~C~ICl~~~~~p---v~l~CGH~FC~~Cl~~wl~~~~~~~~CPvCr~~v~~ 77 (222)
....+..+|+||++.+.++ +.++|||.||..||.+|++. ...||+||+.+..
T Consensus 18 ~~~~~~~~C~IC~~~~~~~~~~~~l~C~H~fh~~Ci~~w~~~---~~~CP~Cr~~~~~ 72 (75)
T 1x4j_A 18 NHQSEQTLCVVCMCDFESRQLLRVLPCNHEFHAKCVDKWLKA---NRTCPICRADSGP 72 (75)
T ss_dssp SCSSSCCEETTTTEECCBTCEEEEETTTEEEETTHHHHHHHH---CSSCTTTCCCCCC
T ss_pred cccCCCCCCeECCcccCCCCeEEEECCCCHhHHHHHHHHHHc---CCcCcCcCCcCCC
Confidence 3445678899999998877 66899999999999999985 4589999998764
No 32
>4ap4_A E3 ubiquitin ligase RNF4; ligase-signalling protein complex, chimera; 2.21A {Rattus norvegicus}
Probab=99.34 E-value=4e-13 Score=103.24 Aligned_cols=59 Identities=31% Similarity=0.799 Sum_probs=51.6
Q ss_pred CCCCccccccccCCCCc-------EEcccCCccCHhHHHHHHHhcCCCCCCCcccccccccccccccCC
Q 027545 25 DAGGFECNICFELAQDP-------IVTLCGHLFCWPCLYRWLHHHSHSQECPVCKAVVQEEKLVPLYGR 86 (222)
Q Consensus 25 ~~~~~~C~ICl~~~~~p-------v~l~CGH~FC~~Cl~~wl~~~~~~~~CPvCr~~v~~~~l~p~~~~ 86 (222)
..++++|+||++.+.+| +.++|||.||+.||.+|++ ....||+||+.+..+++.+++..
T Consensus 4 ~~~~~~C~IC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~---~~~~CP~Cr~~~~~~~l~~l~i~ 69 (133)
T 4ap4_A 4 GSGTVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLK---NANTCPTCRKKINHKRYHPIYIG 69 (133)
T ss_dssp -CCSCBCTTTCCBHHHHHHTTCCEEEETTCCEEEHHHHHHHHT---TCSBCTTTCCBCTTTCEEECBCS
T ss_pred CCCCCCCcccChhhhCccccccCeEecCCCChhhHHHHHHHHH---hCCCCCCCCCcCccccccccccC
Confidence 34678999999999988 8899999999999999998 45699999999998888887654
No 33
>4ayc_A E3 ubiquitin-protein ligase RNF8; DNA damage, K63 chains; HET: CPQ; 1.90A {Homo sapiens} PDB: 4epo_C
Probab=99.33 E-value=3.1e-13 Score=106.20 Aligned_cols=49 Identities=29% Similarity=0.859 Sum_probs=43.9
Q ss_pred CCccccccccCCCCcEEcccCCccCHhHHHHHHHhcCCCCCCCccccccccc
Q 027545 27 GGFECNICFELAQDPIVTLCGHLFCWPCLYRWLHHHSHSQECPVCKAVVQEE 78 (222)
Q Consensus 27 ~~~~C~ICl~~~~~pv~l~CGH~FC~~Cl~~wl~~~~~~~~CPvCr~~v~~~ 78 (222)
+++.|+||++.+.+|++++|||.||..||.+|+. ....||+||+.+...
T Consensus 52 ~~~~C~iC~~~~~~~~~~~CgH~fc~~Ci~~~~~---~~~~CP~Cr~~~~~~ 100 (138)
T 4ayc_A 52 NELQCIICSEYFIEAVTLNCAHSFCSYCINEWMK---RKIECPICRKDIKSK 100 (138)
T ss_dssp HHSBCTTTCSBCSSEEEETTSCEEEHHHHHHHTT---TCSBCTTTCCBCCCE
T ss_pred ccCCCcccCcccCCceECCCCCCccHHHHHHHHH---cCCcCCCCCCcCCCC
Confidence 4578999999999999999999999999999998 456899999998643
No 34
>1chc_A Equine herpes virus-1 ring domain; viral protein; NMR {Equid herpesvirus 1} SCOP: g.44.1.1
Probab=99.33 E-value=1.2e-12 Score=90.15 Aligned_cols=48 Identities=33% Similarity=0.894 Sum_probs=42.3
Q ss_pred CCCccccccccCCCCc-EEcccCCccCHhHHHHHHHhcCCCCCCCccccccc
Q 027545 26 AGGFECNICFELAQDP-IVTLCGHLFCWPCLYRWLHHHSHSQECPVCKAVVQ 76 (222)
Q Consensus 26 ~~~~~C~ICl~~~~~p-v~l~CGH~FC~~Cl~~wl~~~~~~~~CPvCr~~v~ 76 (222)
+...+|+||++.+.++ +.++|||.||..|+.+|++. ...||+||+.+.
T Consensus 3 ~~~~~C~IC~~~~~~~~~~~~C~H~fc~~Ci~~~~~~---~~~CP~Cr~~~~ 51 (68)
T 1chc_A 3 TVAERCPICLEDPSNYSMALPCLHAFCYVCITRWIRQ---NPTCPLCKVPVE 51 (68)
T ss_dssp CCCCCCSSCCSCCCSCEEETTTTEEESTTHHHHHHHH---SCSTTTTCCCCC
T ss_pred CCCCCCeeCCccccCCcEecCCCCeeHHHHHHHHHhC---cCcCcCCChhhH
Confidence 3567899999999997 67899999999999999984 469999999887
No 35
>2ecm_A Ring finger and CHY zinc finger domain- containing protein 1; RCHY1, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Mus musculus} PDB: 2jrj_A
Probab=99.32 E-value=7.9e-13 Score=87.27 Aligned_cols=48 Identities=31% Similarity=0.686 Sum_probs=41.3
Q ss_pred CCCccccccccCCCC----cEEcccCCccCHhHHHHHHHhcCCCCCCCccccccc
Q 027545 26 AGGFECNICFELAQD----PIVTLCGHLFCWPCLYRWLHHHSHSQECPVCKAVVQ 76 (222)
Q Consensus 26 ~~~~~C~ICl~~~~~----pv~l~CGH~FC~~Cl~~wl~~~~~~~~CPvCr~~v~ 76 (222)
.++.+|+||++.+.+ ++.++|||.||..||.+|++.. ..||+||+.+.
T Consensus 3 ~~~~~C~IC~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~~---~~CP~Cr~~~~ 54 (55)
T 2ecm_A 3 SGSSGCPICLEDIHTSRVVAHVLPCGHLLHRTCYEEMLKEG---YRCPLCSGPSS 54 (55)
T ss_dssp SCCCSCTTTCCCCCTTTSCEEECTTSCEEETTHHHHHHHHT---CCCTTSCCSSC
T ss_pred CCCCcCcccChhhcCCCcCeEecCCCCcccHHHHHHHHHcC---CcCCCCCCcCC
Confidence 356789999999866 6778999999999999999953 78999998765
No 36
>2ckl_A Polycomb group ring finger protein 4; BMI1, RING1B, polycomb, E3-ligase, nuclear protein, chromosomal protein, transcription regulation; 2.0A {Mus musculus} PDB: 3rpg_B 2h0d_A
Probab=99.32 E-value=6.3e-13 Score=100.01 Aligned_cols=51 Identities=29% Similarity=0.646 Sum_probs=45.8
Q ss_pred CCCCccccccccCCCCcEEc-ccCCccCHhHHHHHHHhcCCCCCCCccccccccc
Q 027545 25 DAGGFECNICFELAQDPIVT-LCGHLFCWPCLYRWLHHHSHSQECPVCKAVVQEE 78 (222)
Q Consensus 25 ~~~~~~C~ICl~~~~~pv~l-~CGH~FC~~Cl~~wl~~~~~~~~CPvCr~~v~~~ 78 (222)
..+++.|+||++.+.+|+.+ +|||.||..||.+|++ ....||+||+.+...
T Consensus 12 ~~~~~~C~IC~~~~~~p~~~~~CgH~fC~~Ci~~~~~---~~~~CP~Cr~~~~~~ 63 (108)
T 2ckl_A 12 LNPHLMCVLCGGYFIDATTIIECLHSFCKTCIVRYLE---TSKYCPICDVQVHKT 63 (108)
T ss_dssp HGGGTBCTTTSSBCSSEEEETTTCCEEEHHHHHHHHT---SCSBCTTTCCBSCSS
T ss_pred cCCcCCCccCChHHhCcCEeCCCCChhhHHHHHHHHH---hCCcCcCCCcccccc
Confidence 45678999999999999997 9999999999999998 357999999998865
No 37
>3hct_A TNF receptor-associated factor 6; cross-brace, beta-BETA-alpha, coiled coil, cytoplasm, metal- binding, UBL conjugation, UBL conjugation pathway; 2.10A {Homo sapiens} PDB: 3hcu_A 2eci_A 2jmd_A
Probab=99.31 E-value=8.7e-13 Score=100.92 Aligned_cols=62 Identities=27% Similarity=0.648 Sum_probs=52.8
Q ss_pred CCCCCCCccccccccCCCCcEEcccCCccCHhHHHHHHHhcCCCCCCCcccccccccccccccC
Q 027545 22 SANDAGGFECNICFELAQDPIVTLCGHLFCWPCLYRWLHHHSHSQECPVCKAVVQEEKLVPLYG 85 (222)
Q Consensus 22 ~~~~~~~~~C~ICl~~~~~pv~l~CGH~FC~~Cl~~wl~~~~~~~~CPvCr~~v~~~~l~p~~~ 85 (222)
.+...+.+.|+||++.+.+|+.++|||+||..||.+|++.. ...||+||+.+..+++.++..
T Consensus 12 ~~~~~~~~~C~IC~~~~~~p~~~~CgH~fC~~Ci~~~~~~~--~~~CP~Cr~~~~~~~~~~~~~ 73 (118)
T 3hct_A 12 DPPLESKYECPICLMALREAVQTPCGHRFCKACIIKSIRDA--GHKCPVDNEILLENQLFPDNF 73 (118)
T ss_dssp SSCCCGGGBCTTTCSBCSSEEECTTSCEEEHHHHHHHHHHH--CSBCTTTCCBCCGGGCEECHH
T ss_pred ccCCCCCCCCCcCChhhcCeEECCcCChhhHHHHHHHHhhC--CCCCCCCCCCcCHHhcccCHH
Confidence 44566789999999999999999999999999999999853 248999999998877666544
No 38
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2
Probab=99.31 E-value=1e-12 Score=112.71 Aligned_cols=65 Identities=20% Similarity=0.283 Sum_probs=55.7
Q ss_pred CCCCCCccccccccCCCCcEEcccCCccCHhHHHHHHHhcCCCCCCCcccccccccccccccCCCCC
Q 027545 23 ANDAGGFECNICFELAQDPIVTLCGHLFCWPCLYRWLHHHSHSQECPVCKAVVQEEKLVPLYGRGKT 89 (222)
Q Consensus 23 ~~~~~~~~C~ICl~~~~~pv~l~CGH~FC~~Cl~~wl~~~~~~~~CPvCr~~v~~~~l~p~~~~~~~ 89 (222)
......+.|+||++.+.+||+++|||+||..||.+|+... ...||+||..+..++++|+......
T Consensus 203 ~~~~~~~~c~i~~~~~~dPv~~~~gh~f~~~~i~~~~~~~--~~~cP~~~~~~~~~~l~~n~~l~~~ 267 (281)
T 2c2l_A 203 RDIPDYLCGKISFELMREPCITPSGITYDRKDIEEHLQRV--GHFNPVTRSPLTQEQLIPNLAMKEV 267 (281)
T ss_dssp CCCCSTTBCTTTCSBCSSEEECSSCCEEETTHHHHHHHHT--CSSCTTTCCCCCGGGCEECHHHHHH
T ss_pred CCCCcccCCcCcCCHhcCCeECCCCCEECHHHHHHHHHHC--CCCCcCCCCCCchhcCcccHHHHHH
Confidence 3455789999999999999999999999999999999853 3459999999999899988765443
No 39
>2l0b_A E3 ubiquitin-protein ligase praja-1; zinc finger, NESG, structural genomics, PSI-2, protein struc initiative; NMR {Homo sapiens}
Probab=99.30 E-value=1.3e-12 Score=95.65 Aligned_cols=51 Identities=29% Similarity=0.667 Sum_probs=43.4
Q ss_pred CCCCCccccccccCCCC---cEEcccCCccCHhHHHHHHHhcCCCCCCCcccccccc
Q 027545 24 NDAGGFECNICFELAQD---PIVTLCGHLFCWPCLYRWLHHHSHSQECPVCKAVVQE 77 (222)
Q Consensus 24 ~~~~~~~C~ICl~~~~~---pv~l~CGH~FC~~Cl~~wl~~~~~~~~CPvCr~~v~~ 77 (222)
....+.+|+||++.+.+ ++.++|||.||..||.+|++ ....||+||+.+..
T Consensus 36 ~~~~~~~C~IC~~~~~~~~~~~~l~C~H~Fh~~Ci~~wl~---~~~~CP~Cr~~~~~ 89 (91)
T 2l0b_A 36 AVGQEMCCPICCSEYVKGDVATELPCHHYFHKPCVSIWLQ---KSGTCPVCRCMFPP 89 (91)
T ss_dssp SSSSCSEETTTTEECCTTCEEEEETTTEEEEHHHHHHHHT---TTCBCTTTCCBSSC
T ss_pred ccCCCCCCcccChhhcCCCcEEecCCCChHHHHHHHHHHH---cCCcCcCcCccCCC
Confidence 34567889999998877 67789999999999999998 45699999998763
No 40
>1z6u_A NP95-like ring finger protein isoform B; structural genomics consortium, ligase, ubiquitin-protein ligase, cell cycle regulation, SGC; 2.10A {Homo sapiens}
Probab=99.29 E-value=1.4e-12 Score=104.23 Aligned_cols=57 Identities=30% Similarity=0.612 Sum_probs=48.2
Q ss_pred CCccccccccCCCCcEEcccCCccCHhHHHHHHHhcCCCCCCCccccccccc-ccccccC
Q 027545 27 GGFECNICFELAQDPIVTLCGHLFCWPCLYRWLHHHSHSQECPVCKAVVQEE-KLVPLYG 85 (222)
Q Consensus 27 ~~~~C~ICl~~~~~pv~l~CGH~FC~~Cl~~wl~~~~~~~~CPvCr~~v~~~-~l~p~~~ 85 (222)
+.+.|+||++.+.+|++++|||+||..||.+|+.. ....||+||..+... .+.+++.
T Consensus 77 ~~~~C~IC~~~~~~pv~~~CgH~fC~~Ci~~~~~~--~~~~CP~Cr~~~~~~~~l~~n~~ 134 (150)
T 1z6u_A 77 QSFMCVCCQELVYQPVTTECFHNVCKDCLQRSFKA--QVFSCPACRHDLGQNYIMIPNEI 134 (150)
T ss_dssp HHTBCTTTSSBCSSEEECTTSCEEEHHHHHHHHHT--TCCBCTTTCCBCCTTCCCCBCHH
T ss_pred cCCEeecCChhhcCCEEcCCCCchhHHHHHHHHHh--CCCcCCCCCccCCCCCCCCCCHH
Confidence 45789999999999999999999999999999983 345899999999876 4555443
No 41
>3l11_A E3 ubiquitin-protein ligase RNF168; E3 ligase, ring domain, DNA damage, chromatin regulator, CHR protein, DNA repair, metal-binding, nucleus; 2.12A {Homo sapiens}
Probab=99.29 E-value=3.5e-13 Score=102.40 Aligned_cols=53 Identities=28% Similarity=0.736 Sum_probs=46.3
Q ss_pred CCCCCCccccccccCCCCcEEcccCCccCHhHHHHHHHhcCCCCCCCcccccccc
Q 027545 23 ANDAGGFECNICFELAQDPIVTLCGHLFCWPCLYRWLHHHSHSQECPVCKAVVQE 77 (222)
Q Consensus 23 ~~~~~~~~C~ICl~~~~~pv~l~CGH~FC~~Cl~~wl~~~~~~~~CPvCr~~v~~ 77 (222)
....++++|+||++.+.+|++++|||.||..||.+|+.. ....||+||+.+..
T Consensus 10 ~~~~~~~~C~iC~~~~~~p~~~~CgH~fC~~Ci~~~~~~--~~~~CP~Cr~~~~~ 62 (115)
T 3l11_A 10 IPSLSECQCGICMEILVEPVTLPCNHTLCKPCFQSTVEK--ASLCCPFCRRRVSS 62 (115)
T ss_dssp CCCHHHHBCTTTCSBCSSCEECTTSCEECHHHHCCCCCT--TTSBCTTTCCBCHH
T ss_pred cCCCCCCCCccCCcccCceeEcCCCCHHhHHHHHHHHhH--CcCCCCCCCcccCc
Confidence 344567999999999999999999999999999999973 35789999999864
No 42
>1iym_A EL5; ring-H2 finger, ubiquitin ligase, DNA binding protein; NMR {Oryza sativa} SCOP: g.44.1.1
Probab=99.29 E-value=1.5e-12 Score=85.95 Aligned_cols=48 Identities=33% Similarity=0.813 Sum_probs=41.1
Q ss_pred CCCccccccccCCCC---cEEcc-cCCccCHhHHHHHHHhcCCCCCCCccccccc
Q 027545 26 AGGFECNICFELAQD---PIVTL-CGHLFCWPCLYRWLHHHSHSQECPVCKAVVQ 76 (222)
Q Consensus 26 ~~~~~C~ICl~~~~~---pv~l~-CGH~FC~~Cl~~wl~~~~~~~~CPvCr~~v~ 76 (222)
+++.+|+||++.+.+ ++.++ |||.||..||.+|++ ....||+||+.+.
T Consensus 3 ~~~~~C~IC~~~~~~~~~~~~~~~C~H~f~~~Ci~~w~~---~~~~CP~Cr~~~~ 54 (55)
T 1iym_A 3 DDGVECAVCLAELEDGEEARFLPRCGHGFHAECVDMWLG---SHSTCPLCRLTVV 54 (55)
T ss_dssp CCSCCCTTTCCCCCTTSCCEECSSSCCEECTTHHHHTTT---TCCSCSSSCCCSC
T ss_pred CCCCcCccCCccccCCCceEECCCCCCcccHHHHHHHHH---cCCcCcCCCCEeE
Confidence 456789999999877 67776 999999999999998 4568999998764
No 43
>1v87_A Deltex protein 2; ring-H2 domain, zinc-binding domain, notch signaling, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: g.44.1.1
Probab=99.25 E-value=6.1e-12 Score=95.15 Aligned_cols=52 Identities=31% Similarity=0.593 Sum_probs=42.3
Q ss_pred CCccccccccCCCCcE------------------EcccCCccCHhHHHHHHHhc--CCCCCCCccccccccc
Q 027545 27 GGFECNICFELAQDPI------------------VTLCGHLFCWPCLYRWLHHH--SHSQECPVCKAVVQEE 78 (222)
Q Consensus 27 ~~~~C~ICl~~~~~pv------------------~l~CGH~FC~~Cl~~wl~~~--~~~~~CPvCr~~v~~~ 78 (222)
.+.+|+||++.+.++. .++|||.||..||.+|+... .....||+||+.+...
T Consensus 24 ~~~~C~ICl~~~~~~~~~~~~~~~~~~~~~~~~~~~~C~H~Fh~~Ci~~wl~~~~~~~~~~CP~CR~~~~~~ 95 (114)
T 1v87_A 24 PEEDCIICMEKLAVASGYSDMTDSKALGPMVVGRLTKCSHAFHLLCLLAMYCNGNKDGSLQCPSCKTIYGEK 95 (114)
T ss_dssp CSCEETTTTEETTSCCSTTTTCCCSSSCSSCCEEESSSCCEECHHHHHHHHHHTCCSSCCBCTTTCCBSSSC
T ss_pred CCCcCccCChhhcCcccccccccccccCcccceecCCCCCcccHHHHHHHHHcccCCCCCcCCCCCCccCCC
Confidence 4568999999987654 67999999999999999642 1357999999988754
No 44
>1rmd_A RAG1; V(D)J recombination, antibody, MAD, ring finger, zinc binuclear cluster, zinc finger, DNA-binding protein; 2.10A {Mus musculus} SCOP: g.37.1.1 g.44.1.1
Probab=99.25 E-value=3e-12 Score=97.33 Aligned_cols=56 Identities=32% Similarity=0.688 Sum_probs=48.7
Q ss_pred CCCCccccccccCCCCcEEcccCCccCHhHHHHHHHhcCCCCCCCccccccccccccc
Q 027545 25 DAGGFECNICFELAQDPIVTLCGHLFCWPCLYRWLHHHSHSQECPVCKAVVQEEKLVP 82 (222)
Q Consensus 25 ~~~~~~C~ICl~~~~~pv~l~CGH~FC~~Cl~~wl~~~~~~~~CPvCr~~v~~~~l~p 82 (222)
..+.+.|+||++.+.+|+.++|||.||..||.+|+... ...||+||+.+..+++.+
T Consensus 20 ~~~~~~C~IC~~~~~~p~~~~CgH~fC~~Ci~~~~~~~--~~~CP~Cr~~~~~~~~~~ 75 (116)
T 1rmd_A 20 FVKSISCQICEHILADPVETSCKHLFCRICILRCLKVM--GSYCPSCRYPCFPTDLES 75 (116)
T ss_dssp HHHHTBCTTTCSBCSSEEECTTSCEEEHHHHHHHHHHT--CSBCTTTCCBCCGGGCBC
T ss_pred ccCCCCCCCCCcHhcCcEEcCCCCcccHHHHHHHHhHC--cCcCCCCCCCCCHhhccc
Confidence 34578999999999999999999999999999999852 468999999998766554
No 45
>3knv_A TNF receptor-associated factor 2; cross-brace, alternative splicing, apoptosis, cytoplasm, metal-binding, UBL conjugation, zinc, zinc-finger; 1.90A {Homo sapiens}
Probab=99.25 E-value=1e-12 Score=104.16 Aligned_cols=52 Identities=25% Similarity=0.581 Sum_probs=45.6
Q ss_pred CCCCCCccccccccCCCCcEEcccCCccCHhHHHHHHHhcCCCCCCCccccccc
Q 027545 23 ANDAGGFECNICFELAQDPIVTLCGHLFCWPCLYRWLHHHSHSQECPVCKAVVQ 76 (222)
Q Consensus 23 ~~~~~~~~C~ICl~~~~~pv~l~CGH~FC~~Cl~~wl~~~~~~~~CPvCr~~v~ 76 (222)
+...+++.|+||++.+.+|+.++|||+||..||.+|++. ....||+||+.+.
T Consensus 26 ~~l~~~~~C~IC~~~~~~pv~~~CgH~FC~~Ci~~~~~~--~~~~CP~Cr~~~~ 77 (141)
T 3knv_A 26 TKLEAKYLCSACRNVLRRPFQAQCGHRYCSFCLASILSS--GPQNCAACVHEGI 77 (141)
T ss_dssp GGCCGGGBCTTTCSBCSSEEECTTSCEEEHHHHHHHGGG--SCEECHHHHHTTC
T ss_pred ccCCcCcCCCCCChhhcCcEECCCCCccCHHHHHHHHhc--CCCCCCCCCCccc
Confidence 345678999999999999999999999999999999983 3468999999764
No 46
>2ckl_B Ubiquitin ligase protein RING2; BMI1, RING1B, polycomb, E3-ligase, nuclear protein, chromosomal protein, transcription regulation; 2.0A {Mus musculus} PDB: 3rpg_C 2h0d_B
Probab=99.24 E-value=2.5e-12 Score=103.68 Aligned_cols=50 Identities=28% Similarity=0.752 Sum_probs=44.1
Q ss_pred CCCccccccccCCCCcEEc-ccCCccCHhHHHHHHHhcCCCCCCCcccccccc
Q 027545 26 AGGFECNICFELAQDPIVT-LCGHLFCWPCLYRWLHHHSHSQECPVCKAVVQE 77 (222)
Q Consensus 26 ~~~~~C~ICl~~~~~pv~l-~CGH~FC~~Cl~~wl~~~~~~~~CPvCr~~v~~ 77 (222)
.+.+.|+||++.+.+|+.+ +|||.||..||.+|+.. ....||+||..+..
T Consensus 52 ~~~~~C~IC~~~~~~p~~~~~CgH~fC~~Ci~~~~~~--~~~~CP~Cr~~~~~ 102 (165)
T 2ckl_B 52 HSELMCPICLDMLKNTMTTKECLHRFCADCIITALRS--GNKECPTCRKKLVS 102 (165)
T ss_dssp HHHHBCTTTSSBCSSEEEETTTCCEEEHHHHHHHHHT--TCCBCTTTCCBCCS
T ss_pred CCCCCCcccChHhhCcCEeCCCCChhHHHHHHHHHHh--CcCCCCCCCCcCCC
Confidence 3567899999999999997 99999999999999993 36789999999853
No 47
>4ap4_A E3 ubiquitin ligase RNF4; ligase-signalling protein complex, chimera; 2.21A {Rattus norvegicus}
Probab=99.23 E-value=1.8e-12 Score=99.58 Aligned_cols=57 Identities=32% Similarity=0.859 Sum_probs=51.0
Q ss_pred CCCCccccccccCCCCc-------EEcccCCccCHhHHHHHHHhcCCCCCCCccccccccccccccc
Q 027545 25 DAGGFECNICFELAQDP-------IVTLCGHLFCWPCLYRWLHHHSHSQECPVCKAVVQEEKLVPLY 84 (222)
Q Consensus 25 ~~~~~~C~ICl~~~~~p-------v~l~CGH~FC~~Cl~~wl~~~~~~~~CPvCr~~v~~~~l~p~~ 84 (222)
.++..+|+||++.+.++ +.++|||.||+.||.+|++. ...||+||+.+..+++.++|
T Consensus 69 ~~~~~~C~iC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~---~~~CP~Cr~~~~~~~~~~~~ 132 (133)
T 4ap4_A 69 GSGTVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKN---ANTCPTCRKKINHKRYHPIY 132 (133)
T ss_dssp SSSSCBCTTTCCBHHHHHHTTCCEEEETTSBEEEHHHHHHHHHH---CSBCTTTCCBCCGGGEEEEC
T ss_pred CCCCCCCCCCCCccccccccCcceEeCCCCChhhHHHHHHHHHc---CCCCCCCCCcCChhcceeee
Confidence 45678899999998876 88899999999999999994 46999999999999999887
No 48
>2f42_A STIP1 homology and U-box containing protein 1; chaperone; 2.50A {Danio rerio} PDB: 2c2v_S 2oxq_C
Probab=99.22 E-value=5.9e-12 Score=103.68 Aligned_cols=64 Identities=19% Similarity=0.268 Sum_probs=55.6
Q ss_pred CCCCCCccccccccCCCCcEEcccCCccCHhHHHHHHHhcCCCCCCCcccccccccccccccCCCC
Q 027545 23 ANDAGGFECNICFELAQDPIVTLCGHLFCWPCLYRWLHHHSHSQECPVCKAVVQEEKLVPLYGRGK 88 (222)
Q Consensus 23 ~~~~~~~~C~ICl~~~~~pv~l~CGH~FC~~Cl~~wl~~~~~~~~CPvCr~~v~~~~l~p~~~~~~ 88 (222)
......+.|+||++.+.|||+++|||+||..||..|+.... ..||+|+..+...+++|+.....
T Consensus 101 ~~ip~~f~CPI~~elm~DPV~~~~Ghtfer~~I~~~l~~~~--~tcP~t~~~l~~~~L~pN~~Lk~ 164 (179)
T 2f42_A 101 REIPDYLCGKISFELMREPCITPSGITYDRKDIEEHLQRVG--HFDPVTRSPLTQDQLIPNLAMKE 164 (179)
T ss_dssp CCCCGGGBCTTTCSBCSSEEECTTSCEEEHHHHHHHHHHTC--SBCTTTCCBCCGGGCEECHHHHH
T ss_pred cCCcHhhcccCccccCCCCeECCCCCEECHHHHHHHHHhCC--CCCCCCcCCCChhhCcchHHHHH
Confidence 34567899999999999999999999999999999998532 37999999999989999876543
No 49
>1e4u_A Transcriptional repressor NOT4; gene regulation, transcriptional control; NMR {Homo sapiens} SCOP: g.44.1.1 PDB: 1ur6_B
Probab=99.22 E-value=9.3e-12 Score=89.19 Aligned_cols=55 Identities=25% Similarity=0.536 Sum_probs=43.8
Q ss_pred CCCCCccccccccCCC--CcEEcc--cCCccCHhHHHHHHHhcCCCCCCCccccccccccc
Q 027545 24 NDAGGFECNICFELAQ--DPIVTL--CGHLFCWPCLYRWLHHHSHSQECPVCKAVVQEEKL 80 (222)
Q Consensus 24 ~~~~~~~C~ICl~~~~--~pv~l~--CGH~FC~~Cl~~wl~~~~~~~~CPvCr~~v~~~~l 80 (222)
...++++|+||++.+. +++.++ |||.||..|+.++++. ....||+||+.+..+.+
T Consensus 7 ~~~~~~~CpICle~~~~~d~~~~p~~CGH~fC~~Cl~~~~~~--~~~~CP~CR~~~~~~~~ 65 (78)
T 1e4u_A 7 AKEDPVECPLCMEPLEIDDINFFPCTCGYQICRFCWHRIRTD--ENGLCPACRKPYPEDPA 65 (78)
T ss_dssp CCCCCCBCTTTCCBCCTTTTTCCSSTTSCCCCHHHHHHHTTS--SCSBCTTTCCBCSSCSS
T ss_pred ccccCCcCCccCccCccccccccccCCCCCcCHHHHHHHHhc--CCCCCCCCCCccCCCch
Confidence 3457789999999874 455555 9999999999998863 46799999999986544
No 50
>1jm7_B BARD1, BRCA1-associated ring domain protein 1; ring finger, zinc-binding protein, heterodimer, ubiquitin ligase, antitumor; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=99.22 E-value=1.9e-12 Score=98.94 Aligned_cols=57 Identities=23% Similarity=0.528 Sum_probs=49.5
Q ss_pred CCCCCccccccccCCCCcEEc-ccCCccCHhHHHHHHHhcCCCCCCCcccccccccccccccC
Q 027545 24 NDAGGFECNICFELAQDPIVT-LCGHLFCWPCLYRWLHHHSHSQECPVCKAVVQEEKLVPLYG 85 (222)
Q Consensus 24 ~~~~~~~C~ICl~~~~~pv~l-~CGH~FC~~Cl~~wl~~~~~~~~CPvCr~~v~~~~l~p~~~ 85 (222)
...+.+.|+||++.+.+|+++ +|||+||..||.+|+. ..||+||+.+...++.+++.
T Consensus 18 ~l~~~~~C~IC~~~~~~pv~~~~CgH~fC~~Ci~~~~~-----~~CP~Cr~~~~~~~~~~n~~ 75 (117)
T 1jm7_B 18 RLEKLLRCSRCTNILREPVCLGGCEHIFCSNCVSDCIG-----TGCPVCYTPAWIQDLKINRQ 75 (117)
T ss_dssp HHHHTTSCSSSCSCCSSCBCCCSSSCCBCTTTGGGGTT-----TBCSSSCCBCSCSSCCCCHH
T ss_pred hchhCCCCCCCChHhhCccEeCCCCCHHHHHHHHHHhc-----CCCcCCCCcCccccccccHH
Confidence 345678999999999999999 9999999999999987 58999999998777766654
No 51
>1bor_A Transcription factor PML; proto-oncogene, nuclear bodies (PODS), leukemia, transcription regulation; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=99.19 E-value=3.7e-12 Score=85.22 Aligned_cols=47 Identities=28% Similarity=0.576 Sum_probs=40.9
Q ss_pred CCCCccccccccCCCCcEEcccCCccCHhHHHHHHHhcCCCCCCCcccccccc
Q 027545 25 DAGGFECNICFELAQDPIVTLCGHLFCWPCLYRWLHHHSHSQECPVCKAVVQE 77 (222)
Q Consensus 25 ~~~~~~C~ICl~~~~~pv~l~CGH~FC~~Cl~~wl~~~~~~~~CPvCr~~v~~ 77 (222)
..+.+.|+||++.+.+|++++|||.||..|+.+ ....||+||+.+..
T Consensus 3 e~~~~~C~IC~~~~~~p~~l~CgH~fC~~Ci~~------~~~~CP~Cr~~~~~ 49 (56)
T 1bor_A 3 EFQFLRCQQCQAEAKCPKLLPCLHTLCSGCLEA------SGMQCPICQAPWPL 49 (56)
T ss_dssp SCCCSSCSSSCSSCBCCSCSTTSCCSBTTTCSS------SSSSCSSCCSSSSC
T ss_pred cccCCCceEeCCccCCeEEcCCCCcccHHHHcc------CCCCCCcCCcEeec
Confidence 356788999999999999999999999999976 24589999998763
No 52
>2ecl_A Ring-box protein 2; RNF7, ring domian, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.18 E-value=1.9e-11 Score=87.73 Aligned_cols=51 Identities=25% Similarity=0.582 Sum_probs=41.2
Q ss_pred CCCccccccccCCCC--------------cEEc-ccCCccCHhHHHHHHHhcCCCCCCCcccccccccc
Q 027545 26 AGGFECNICFELAQD--------------PIVT-LCGHLFCWPCLYRWLHHHSHSQECPVCKAVVQEEK 79 (222)
Q Consensus 26 ~~~~~C~ICl~~~~~--------------pv~l-~CGH~FC~~Cl~~wl~~~~~~~~CPvCr~~v~~~~ 79 (222)
.++.+|+||++.+.+ .+++ +|||.||..||.+|++. ...||+||+.+..++
T Consensus 13 ~~~~~C~IC~~~~~~~C~iC~~~~~~~~~~~~~~~C~H~FH~~Ci~~Wl~~---~~~CP~CR~~~~~~~ 78 (81)
T 2ecl_A 13 VECDTCAICRVQVMDACLRCQAENKQEDCVVVWGECNHSFHNCCMSLWVKQ---NNRCPLCQQDWVVQR 78 (81)
T ss_dssp CCCSCBTTTTBCTTSCCTTHHHHTCTTTCCEEEETTSCEEEHHHHHHHTTT---CCBCTTTCCBCCEEE
T ss_pred CCCCCCcccChhhhccCcccccccCCCceEEEeCCCCCccChHHHHHHHHh---CCCCCCcCCCcchhh
Confidence 355679999998866 4455 59999999999999994 459999999987554
No 53
>3hcs_A TNF receptor-associated factor 6; cross-brace, beta-BETA-alpha, coiled coil, cytoplasm, metal- binding, UBL conjugation, UBL conjugation pathway; 2.20A {Homo sapiens}
Probab=99.16 E-value=1.4e-11 Score=99.61 Aligned_cols=62 Identities=27% Similarity=0.648 Sum_probs=52.8
Q ss_pred CCCCCCCccccccccCCCCcEEcccCCccCHhHHHHHHHhcCCCCCCCcccccccccccccccC
Q 027545 22 SANDAGGFECNICFELAQDPIVTLCGHLFCWPCLYRWLHHHSHSQECPVCKAVVQEEKLVPLYG 85 (222)
Q Consensus 22 ~~~~~~~~~C~ICl~~~~~pv~l~CGH~FC~~Cl~~wl~~~~~~~~CPvCr~~v~~~~l~p~~~ 85 (222)
.+...+.+.|+||++.+.+|+.++|||+||..||.+|+... ...||+||..+..+++.++..
T Consensus 12 ~~~~~~~~~C~IC~~~~~~pv~~~CgH~fC~~Ci~~~~~~~--~~~CP~Cr~~~~~~~~~~~~~ 73 (170)
T 3hcs_A 12 DPPLESKYECPICLMALREAVQTPCGHRFCKACIIKSIRDA--GHKCPVDNEILLENQLFPDNF 73 (170)
T ss_dssp SSCCCGGGBCTTTCSBCSSEEECTTSCEEEHHHHHHHHHHH--CSBCTTTCCBCCGGGCEECHH
T ss_pred ccCCCCCCCCCCCChhhcCcEECCCCCHHHHHHHHHHHHhC--CCCCCCCccCcchhhhhhhHH
Confidence 34567789999999999999999999999999999999853 348999999998877666543
No 54
>2vje_A E3 ubiquitin-protein ligase MDM2; proto-oncogene, phosphorylation, alternative splicing, HOST-virus interaction, UBL conjugation pathway, zinc-finger, polymorphism; HET: FLC; 2.20A {Homo sapiens} PDB: 2vjf_A* 2hdp_A
Probab=99.14 E-value=1.7e-11 Score=84.32 Aligned_cols=54 Identities=28% Similarity=0.633 Sum_probs=45.5
Q ss_pred CCCccccccccCCCCcEEc--ccCCc-cCHhHHHHHHHhcCCCCCCCccccccccccccccc
Q 027545 26 AGGFECNICFELAQDPIVT--LCGHL-FCWPCLYRWLHHHSHSQECPVCKAVVQEEKLVPLY 84 (222)
Q Consensus 26 ~~~~~C~ICl~~~~~pv~l--~CGH~-FC~~Cl~~wl~~~~~~~~CPvCr~~v~~~~l~p~~ 84 (222)
.++.+|.||++...+++.+ +|||. +|+.|+.+|++ ....||+||+.+. +++++|
T Consensus 6 ~~~~~C~IC~~~~~~~~~~~~pCgH~~~C~~C~~~~~~---~~~~CPiCR~~i~--~~i~i~ 62 (64)
T 2vje_A 6 NAIEPCVICQGRPKNGCIVHGKTGHLMACFTCAKKLKK---RNKPCPVCRQPIQ--MIVLTY 62 (64)
T ss_dssp GGGSCCTTTSSSCSCEEEEETTEEEEEECHHHHHHHHH---TTCCCTTTCCCCC--EEEEEE
T ss_pred CCcCCCCcCCCCCCCEEEECCCCCChhhHHHHHHHHHH---cCCcCCCcCcchh--ceEeee
Confidence 3556899999999999987 99999 89999999998 4568999999986 455554
No 55
>2vje_B MDM4 protein; proto-oncogene, phosphorylation, alternative splicing, HOST-virus interaction, UBL conjugation pathway, zinc-finger, polymorphism; HET: FLC; 2.20A {Homo sapiens} PDB: 2vjf_B*
Probab=99.11 E-value=2.4e-11 Score=83.26 Aligned_cols=54 Identities=26% Similarity=0.613 Sum_probs=45.0
Q ss_pred CCCccccccccCCCCcEEc--ccCCc-cCHhHHHHHHHhcCCCCCCCccccccccccccccc
Q 027545 26 AGGFECNICFELAQDPIVT--LCGHL-FCWPCLYRWLHHHSHSQECPVCKAVVQEEKLVPLY 84 (222)
Q Consensus 26 ~~~~~C~ICl~~~~~pv~l--~CGH~-FC~~Cl~~wl~~~~~~~~CPvCr~~v~~~~l~p~~ 84 (222)
+...+|.||++...+++++ +|||. +|+.|+.+|.+ ....||+||+.+. +++.+|
T Consensus 5 ~~~~~C~IC~~~~~~~~~~~~pCgH~~~C~~C~~~~~~---~~~~CPiCR~~i~--~~i~i~ 61 (63)
T 2vje_B 5 NLLKPCSLCEKRPRDGNIIHGRTGHLVTCFHCARRLKK---AGASCPICKKEIQ--LVIKVF 61 (63)
T ss_dssp GGGSBCTTTSSSBSCEEEEETTEEEEEECHHHHHHHHH---TTCBCTTTCCBCC--EEEEEE
T ss_pred CcCCCCcccCCcCCCeEEEecCCCCHhHHHHHHHHHHH---hCCcCCCcCchhh--ceEEEe
Confidence 3456899999999999887 99998 99999999987 3468999999986 455444
No 56
>2ea5_A Cell growth regulator with ring finger domain protein 1; CGRRF1, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.10 E-value=1.1e-10 Score=81.29 Aligned_cols=54 Identities=26% Similarity=0.602 Sum_probs=43.9
Q ss_pred CCCCCCCccccccccCCCCcEEcccCCc-cCHhHHHHHHHhcCCCCCCCccccccccccccccc
Q 027545 22 SANDAGGFECNICFELAQDPIVTLCGHL-FCWPCLYRWLHHHSHSQECPVCKAVVQEEKLVPLY 84 (222)
Q Consensus 22 ~~~~~~~~~C~ICl~~~~~pv~l~CGH~-FC~~Cl~~wl~~~~~~~~CPvCr~~v~~~~l~p~~ 84 (222)
+....+..+|.||++...+++.++|||. ||+.|+.. ...||+||+.+.. .+.+|
T Consensus 9 e~~~~~~~~C~IC~~~~~~~v~~pCgH~~~C~~C~~~-------~~~CP~CR~~i~~--~~~i~ 63 (68)
T 2ea5_A 9 EPSEENSKDCVVCQNGTVNWVLLPCRHTCLCDGCVKY-------FQQCPMCRQFVQE--SFALS 63 (68)
T ss_dssp CCSCCCSSCCSSSSSSCCCCEETTTTBCCSCTTHHHH-------CSSCTTTCCCCCC--EECCC
T ss_pred cccCCCCCCCCCcCcCCCCEEEECCCChhhhHHHHhc-------CCCCCCCCcchhc--eEEee
Confidence 3445567889999999999999999999 99999973 2589999999873 44444
No 57
>2ecg_A Baculoviral IAP repeat-containing protein 4; BIRC4, ring domian, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.09 E-value=6.9e-12 Score=88.61 Aligned_cols=45 Identities=29% Similarity=0.688 Sum_probs=39.1
Q ss_pred CCCccccccccCCCCcEEcccCCc-cCHhHHHHHHHhcCCCCCCCcccccccc
Q 027545 26 AGGFECNICFELAQDPIVTLCGHL-FCWPCLYRWLHHHSHSQECPVCKAVVQE 77 (222)
Q Consensus 26 ~~~~~C~ICl~~~~~pv~l~CGH~-FC~~Cl~~wl~~~~~~~~CPvCr~~v~~ 77 (222)
.+..+|+||++.+.+++.++|||. ||..|+.+ ...||+||+.+..
T Consensus 23 ~~~~~C~IC~~~~~~~~~~pCgH~~~C~~C~~~-------~~~CP~Cr~~i~~ 68 (75)
T 2ecg_A 23 QEEKLCKICMDRNIAIVFVPCGHLVTCKQCAEA-------VDKCPMCYTVITF 68 (75)
T ss_dssp HHHHSCSSSCSSCCCBCCSSSCCCCBCHHHHHH-------CSBCTTTCCBCCC
T ss_pred CCCCCCCcCCCCCCCEEEecCCCHHHHHHHhhC-------CCCCccCCceecC
Confidence 346789999999999999999999 99999953 2589999999874
No 58
>2bay_A PRE-mRNA splicing factor PRP19; U-BOX, ubiquitin ligase, E3 ligase; 1.50A {Saccharomyces cerevisiae} SCOP: g.44.1.2 PDB: 1n87_A
Probab=99.08 E-value=4.2e-11 Score=81.90 Aligned_cols=55 Identities=15% Similarity=0.305 Sum_probs=49.8
Q ss_pred CccccccccCCCCcEEc-ccCCccCHhHHHHHHHhcCCCCCCCcccccccccccccccC
Q 027545 28 GFECNICFELAQDPIVT-LCGHLFCWPCLYRWLHHHSHSQECPVCKAVVQEEKLVPLYG 85 (222)
Q Consensus 28 ~~~C~ICl~~~~~pv~l-~CGH~FC~~Cl~~wl~~~~~~~~CPvCr~~v~~~~l~p~~~ 85 (222)
.+.|+||++.++|||++ +|||+|+..||.+|++.+ ..||++++.+..++++|+..
T Consensus 3 ~~~CpIs~~~m~dPV~~~~sG~~yer~~I~~~l~~~---~~cP~t~~~L~~~~Lip~~~ 58 (61)
T 2bay_A 3 HMLCAISGKVPRRPVLSPKSRTIFEKSLLEQYVKDT---GNDPITNEPLSIEEIVEIVP 58 (61)
T ss_dssp -CCCTTTCSCCSSEEEETTTTEEEEHHHHHHHHHHH---SBCTTTCCBCCGGGCEECCC
T ss_pred eEEecCCCCCCCCCEEeCCCCcEEcHHHHHHHHHhC---CCCcCCcCCCChhhcEECcc
Confidence 47899999999999999 999999999999999854 36999999999999999865
No 59
>4ic3_A E3 ubiquitin-protein ligase XIAP; ring domain, zinc-finger, E3 ligase; 1.78A {Homo sapiens} PDB: 4ic2_A
Probab=99.07 E-value=2.5e-11 Score=85.62 Aligned_cols=46 Identities=28% Similarity=0.633 Sum_probs=40.9
Q ss_pred CCCCccccccccCCCCcEEcccCCc-cCHhHHHHHHHhcCCCCCCCcccccccc
Q 027545 25 DAGGFECNICFELAQDPIVTLCGHL-FCWPCLYRWLHHHSHSQECPVCKAVVQE 77 (222)
Q Consensus 25 ~~~~~~C~ICl~~~~~pv~l~CGH~-FC~~Cl~~wl~~~~~~~~CPvCr~~v~~ 77 (222)
..++..|+||++.+.+++.++|||. ||..|+.+| ..||+||+.+..
T Consensus 21 ~~~~~~C~iC~~~~~~~~~~pCgH~~~C~~C~~~~-------~~CP~Cr~~i~~ 67 (74)
T 4ic3_A 21 LQEEKLCKICMDRNIAIVFVPCGHLVTCKQCAEAV-------DKCPMCYTVITF 67 (74)
T ss_dssp HHHHTBCTTTSSSBCCEEEETTCCBCCCHHHHTTC-------SBCTTTCCBCSE
T ss_pred CccCCCCCCCCCCCCCEEEcCCCChhHHHHhhhcC-------ccCCCcCcCccC
Confidence 3456889999999999999999999 999999877 479999999873
No 60
>2y1n_A E3 ubiquitin-protein ligase; ligase-transferase complex, ubiquitin ring E3 ligase; HET: PTR; 2.00A {Homo sapiens} PDB: 2y1m_A* 4a4c_A* 4a4b_A* 1fbv_A* 3vgo_A 4a49_A* 2k4d_A 2ldr_A*
Probab=99.06 E-value=7.7e-11 Score=107.38 Aligned_cols=54 Identities=31% Similarity=0.741 Sum_probs=46.7
Q ss_pred CCccccccccCCCCcEEcccCCccCHhHHHHHHHhcCCCCCCCccccccccccccc
Q 027545 27 GGFECNICFELAQDPIVTLCGHLFCWPCLYRWLHHHSHSQECPVCKAVVQEEKLVP 82 (222)
Q Consensus 27 ~~~~C~ICl~~~~~pv~l~CGH~FC~~Cl~~wl~~~~~~~~CPvCr~~v~~~~l~p 82 (222)
...+|+||++...+++.++|||.||+.|+.+|+.. ....||+||+.+....++.
T Consensus 331 ~~~~C~ICle~~~~pv~lpCGH~FC~~Ci~~wl~~--~~~~CP~CR~~i~~~~~i~ 384 (389)
T 2y1n_A 331 TFQLCKICAENDKDVKIEPCGHLMCTSCLTSWQES--EGQGCPFCRCEIKGTEPIV 384 (389)
T ss_dssp SSSBCTTTSSSBCCEEEETTCCEECHHHHHHHHHH--TCSBCTTTCCBCCEEEECS
T ss_pred CCCCCCccCcCCCCeEEeCCCChhhHHHHHHHHhc--CCCCCCCCCCccCCceeEe
Confidence 34789999999999999999999999999999984 3568999999998765443
No 61
>3htk_C E3 SUMO-protein ligase MMS21; SUMO E3 ligase, SPL-ring, ring, ATP-binding, chromosomal protein, coiled coil, DNA damage; 2.31A {Saccharomyces cerevisiae}
Probab=99.03 E-value=1.2e-10 Score=100.95 Aligned_cols=62 Identities=21% Similarity=0.418 Sum_probs=53.5
Q ss_pred CCCCccccccccCCCCcEEc-ccCCccCHhHHHHHHHhcCCCCCCCc--ccccccccccccccCCC
Q 027545 25 DAGGFECNICFELAQDPIVT-LCGHLFCWPCLYRWLHHHSHSQECPV--CKAVVQEEKLVPLYGRG 87 (222)
Q Consensus 25 ~~~~~~C~ICl~~~~~pv~l-~CGH~FC~~Cl~~wl~~~~~~~~CPv--Cr~~v~~~~l~p~~~~~ 87 (222)
...++.|+||++.+++||++ .|||+||..||.+|++.. ....||+ |++.+..++++|+..+.
T Consensus 178 ~~~el~CPIcl~~f~DPVts~~CGHsFcR~cI~~~~~~~-~~~~CPvtGCr~~l~~~dL~pN~~L~ 242 (267)
T 3htk_C 178 GKIELTCPITCKPYEAPLISRKCNHVFDRDGIQNYLQGY-TTRDCPQAACSQVVSMRDFVRDPIME 242 (267)
T ss_dssp SBCCSBCTTTSSBCSSEEEESSSCCEEEHHHHHHHSTTC-SCEECSGGGCSCEECGGGEEECHHHH
T ss_pred CceeeECcCccCcccCCeeeCCCCCcccHHHHHHHHHhC-CCCCCCcccccCcCchhhCCcCHHHH
Confidence 44678999999999999985 999999999999999843 3468999 99999999998886643
No 62
>3dpl_R Ring-box protein 1; ubiquitin, NEDD8, cullin, HOST-virus interaction, receptor, UBL conjugation, UBL conjugation pathway, acetylation, cytoplasm; 2.60A {Homo sapiens} SCOP: g.44.1.1 PDB: 3dqv_R 3rtr_B 4f52_B 1u6g_B 2hye_D* 4a0c_D 4a0l_F* 1ldj_B 1ldk_C 2lgv_A
Probab=99.00 E-value=2.1e-10 Score=86.75 Aligned_cols=48 Identities=29% Similarity=0.573 Sum_probs=40.2
Q ss_pred CCccccccccCCCCc------------------EEcccCCccCHhHHHHHHHhcCCCCCCCcccccccc
Q 027545 27 GGFECNICFELAQDP------------------IVTLCGHLFCWPCLYRWLHHHSHSQECPVCKAVVQE 77 (222)
Q Consensus 27 ~~~~C~ICl~~~~~p------------------v~l~CGH~FC~~Cl~~wl~~~~~~~~CPvCr~~v~~ 77 (222)
++..|+||++.+.++ +.++|+|.||..||.+|++ ....||+||+.+..
T Consensus 36 ~~d~CaIC~~~~~~~c~~C~~~~~~~~~~~~~~~~~~C~H~FH~~Ci~~Wl~---~~~~CP~Cr~~~~~ 101 (106)
T 3dpl_R 36 VVDNCAICRNHIMDLCIECQANQASATSEECTVAWGVCNHAFHFHCISRWLK---TRQVCPLDNREWEF 101 (106)
T ss_dssp CSCCCSSSCSCTTSCCTTHHHHTTCC---CCCEEEETTSCEEEHHHHHHHHT---TCSBCSSSCSBCCE
T ss_pred CCCCCccCChhHhCcCchhhccccccCCccceEeecccCcEECHHHHHHHHH---cCCcCcCCCCccee
Confidence 456799999988765 3479999999999999999 45689999998653
No 63
>2d8s_A Cellular modulator of immune recognition; C-MIR, march8, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.98 E-value=9.2e-10 Score=79.14 Aligned_cols=52 Identities=25% Similarity=0.625 Sum_probs=42.3
Q ss_pred CCCCccccccccCC--CCcEEcccC-----CccCHhHHHHHHHhcCCCCCCCcccccccc
Q 027545 25 DAGGFECNICFELA--QDPIVTLCG-----HLFCWPCLYRWLHHHSHSQECPVCKAVVQE 77 (222)
Q Consensus 25 ~~~~~~C~ICl~~~--~~pv~l~CG-----H~FC~~Cl~~wl~~~~~~~~CPvCr~~v~~ 77 (222)
..+...|.||++.+ .++++++|. |.||..||.+|+..+ ....||+||+.+..
T Consensus 12 ~~~~~~C~IC~~~~~~~~~l~~pC~C~Gs~h~fH~~Cl~~Wl~~~-~~~~CplCr~~~~~ 70 (80)
T 2d8s_A 12 PSSQDICRICHCEGDDESPLITPCHCTGSLHFVHQACLQQWIKSS-DTRCCELCKYEFIM 70 (80)
T ss_dssp CTTSCCCSSSCCCCCSSSCEECSSSCCSSSCCEETTHHHHHHHHH-CCSBCSSSCCBCCC
T ss_pred CCCCCCCeEcCccccCCCeeEeccccCCcCCeeCHHHHHHHHhhC-CCCCCCCCCCeeec
Confidence 34456799999876 457888996 999999999999964 34689999998874
No 64
>4a0k_B E3 ubiquitin-protein ligase RBX1; ligase-DNA-binding protein-DNA complex, DNA-binding protein- complex; HET: DNA 3DR; 5.93A {Mus musculus}
Probab=98.80 E-value=7e-10 Score=85.36 Aligned_cols=48 Identities=29% Similarity=0.619 Sum_probs=0.9
Q ss_pred CCccccccccCCCCc-----------------EE-cccCCccCHhHHHHHHHhcCCCCCCCcccccccc
Q 027545 27 GGFECNICFELAQDP-----------------IV-TLCGHLFCWPCLYRWLHHHSHSQECPVCKAVVQE 77 (222)
Q Consensus 27 ~~~~C~ICl~~~~~p-----------------v~-l~CGH~FC~~Cl~~wl~~~~~~~~CPvCr~~v~~ 77 (222)
.+..|+||++.+.++ ++ ++|+|.||..||.+|++. ...||+||+.+..
T Consensus 47 ~~d~CaICl~~~~~~c~~C~~~~~~~~~~~~~v~~~~C~H~FH~~CI~~Wl~~---~~~CP~Cr~~~~~ 112 (117)
T 4a0k_B 47 VVDNCAICRNHIMDLCIECQANQASATSEECTVAWGVCNHAFHFHCISRWLKT---RQVCPLDNREWEF 112 (117)
T ss_dssp CC-------------------------------------------------------------------
T ss_pred CCCcCeECChhhcCcChhhhcccccccccccccccCCcCceEcHHHHHHHHHc---CCcCCCCCCeeee
Confidence 346799999998763 12 489999999999999994 5689999998653
No 65
>2yho_A E3 ubiquitin-protein ligase mylip; ligase, E2 ligase-E3 ligase complex, ring zinc-finger, UBL conjugation pathway; 2.10A {Homo sapiens} PDB: 2yhn_A
Probab=98.79 E-value=1.1e-09 Score=78.29 Aligned_cols=50 Identities=30% Similarity=0.739 Sum_probs=41.7
Q ss_pred CCCccccccccCCCCcEEcccCCc-cCHhHHHHHHHhcCCCCCCCccccccccccccccc
Q 027545 26 AGGFECNICFELAQDPIVTLCGHL-FCWPCLYRWLHHHSHSQECPVCKAVVQEEKLVPLY 84 (222)
Q Consensus 26 ~~~~~C~ICl~~~~~pv~l~CGH~-FC~~Cl~~wl~~~~~~~~CPvCr~~v~~~~l~p~~ 84 (222)
.+...|+||++...+++.++|||. ||..|+..| ..||+||+.+.. .+.+|
T Consensus 16 ~~~~~C~IC~~~~~~~v~~pCgH~~~C~~C~~~~-------~~CP~Cr~~i~~--~~~i~ 66 (79)
T 2yho_A 16 KEAMLCMVCCEEEINSTFCPCGHTVCCESCAAQL-------QSCPVCRSRVEH--VQHVY 66 (79)
T ss_dssp HHHTBCTTTSSSBCCEEEETTCBCCBCHHHHTTC-------SBCTTTCCBCCE--EEECB
T ss_pred CCCCEeEEeCcccCcEEEECCCCHHHHHHHHHhc-------CcCCCCCchhhC--eEEEE
Confidence 345789999999999999999999 999999754 379999999884 34444
No 66
>1wim_A KIAA0161 protein; ring finger domain, UBCM4-interacting protein 4, UIP4, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=98.78 E-value=1.2e-09 Score=80.08 Aligned_cols=56 Identities=25% Similarity=0.609 Sum_probs=44.3
Q ss_pred CCCccccccccCCCCcEEc---ccCCccCHhHHHHHHHhc---C--CCCCCCc--cccc--ccccccc
Q 027545 26 AGGFECNICFELAQDPIVT---LCGHLFCWPCLYRWLHHH---S--HSQECPV--CKAV--VQEEKLV 81 (222)
Q Consensus 26 ~~~~~C~ICl~~~~~pv~l---~CGH~FC~~Cl~~wl~~~---~--~~~~CPv--Cr~~--v~~~~l~ 81 (222)
++.++|+||++.+.+++.+ +|||.||..|+.+|++.+ + ....||. |+.. +..+.+.
T Consensus 3 ~~~~~C~IC~~~~~~~~~~~l~~CgH~FC~~Cl~~~~~~~i~~g~~~~i~CP~~~C~~~~~~~~~~i~ 70 (94)
T 1wim_A 3 SGSSGCKLCLGEYPVEQMTTIAQCQCIFCTLCLKQYVELLIKEGLETAISCPDAACPKQGHLQENEIE 70 (94)
T ss_dssp CSBCCCSSSCCCCBGGGEEEETTTTEEEEHHHHHHHHHHHHHHCSCCCEECSCTTCSSCCEECHHHHH
T ss_pred CCCcCCcccCcccccccceEcCCCCCcccHHHHHHHHHHHhhcCCcccccCccccCCCCCccCHHHHH
Confidence 3578899999999887553 799999999999999853 1 2468999 9998 7765444
No 67
>2ct0_A Non-SMC element 1 homolog; ring domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=98.77 E-value=9.7e-09 Score=72.80 Aligned_cols=57 Identities=23% Similarity=0.539 Sum_probs=45.5
Q ss_pred CCCCCCCCCCccccccccCCCCcEE-cccCCccCHhHHHHHHHhcCCCCCCCccccccc
Q 027545 19 VGNSANDAGGFECNICFELAQDPIV-TLCGHLFCWPCLYRWLHHHSHSQECPVCKAVVQ 76 (222)
Q Consensus 19 ~~~~~~~~~~~~C~ICl~~~~~pv~-l~CGH~FC~~Cl~~wl~~~~~~~~CPvCr~~v~ 76 (222)
++.....+...+|.||.+.+...+. ..|+|.|+..||.+|++++. ..+||+||+.+.
T Consensus 6 ~~~~~y~~~i~~C~IC~~~i~~g~~C~~C~h~fH~~Ci~kWl~~~~-~~~CP~Cr~~w~ 63 (74)
T 2ct0_A 6 SGRETYPDAVKICNICHSLLIQGQSCETCGIRMHLPCVAKYFQSNA-EPRCPHCNDYWP 63 (74)
T ss_dssp CCCCCCSSSSCBCSSSCCBCSSSEECSSSCCEECHHHHHHHSTTCS-SCCCTTTCSCCC
T ss_pred cchhhccCCCCcCcchhhHcccCCccCCCCchhhHHHHHHHHHhcC-CCCCCCCcCcCC
Confidence 4445556677889999999876554 48999999999999998542 479999998776
No 68
>3t6p_A Baculoviral IAP repeat-containing protein 2; ring, BIR, CARD, UBA, apoptosis, ubiquitin ligase, SMAC/ ubiquitin, caspase, IAP family, SMAC mimetic; 1.90A {Homo sapiens} PDB: 1qbh_A 2l9m_A 3eb5_A 3eb6_A 4auq_B
Probab=98.66 E-value=4.6e-09 Score=94.49 Aligned_cols=45 Identities=24% Similarity=0.820 Sum_probs=40.4
Q ss_pred CCCccccccccCCCCcEEcccCCc-cCHhHHHHHHHhcCCCCCCCcccccccc
Q 027545 26 AGGFECNICFELAQDPIVTLCGHL-FCWPCLYRWLHHHSHSQECPVCKAVVQE 77 (222)
Q Consensus 26 ~~~~~C~ICl~~~~~pv~l~CGH~-FC~~Cl~~wl~~~~~~~~CPvCr~~v~~ 77 (222)
.++..|+||++.+.+++.++|||. ||..|+..| ..||+||..+..
T Consensus 293 ~~~~~C~IC~~~~~~~v~lpCgH~~fC~~C~~~~-------~~CP~CR~~i~~ 338 (345)
T 3t6p_A 293 QEERTCKVCMDKEVSVVFIPCGHLVVCQECAPSL-------RKCPICRGIIKG 338 (345)
T ss_dssp HTTCBCTTTSSSBCCEEEETTCCEEECTTTGGGC-------SBCTTTCCBCCE
T ss_pred cCCCCCCccCCcCCceEEcCCCChhHhHHHHhcC-------CcCCCCCCCccC
Confidence 356889999999999999999999 999999876 479999999873
No 69
>3k1l_B Fancl; UBC, ring, RWD, ligase; HET: MAL CIT; 3.20A {Drosophila melanogaster}
Probab=98.39 E-value=1.1e-07 Score=85.24 Aligned_cols=56 Identities=32% Similarity=0.697 Sum_probs=43.0
Q ss_pred CCCCCCCccccccccCCCC----cEE----cccCCccCHhHHHHHHHhcCC--------CCCCCcccccccc
Q 027545 22 SANDAGGFECNICFELAQD----PIV----TLCGHLFCWPCLYRWLHHHSH--------SQECPVCKAVVQE 77 (222)
Q Consensus 22 ~~~~~~~~~C~ICl~~~~~----pv~----l~CGH~FC~~Cl~~wl~~~~~--------~~~CPvCr~~v~~ 77 (222)
.+..+...+|+||++.+.+ |.. ..|||.||..||++|++.... ...||.||++++.
T Consensus 302 ~e~ee~~~ECaICys~~l~~g~lPdk~C~n~~C~h~FH~~CL~kWLrs~~~sRqSFnvi~G~CPyCr~pIs~ 373 (381)
T 3k1l_B 302 DEEDNEELRCNICFAYRLDGGEVPLVSCDNAKCVLKCHAVCLEEWFKTLMDGKTFLEVSFGQCPFCKAKLST 373 (381)
T ss_dssp TTCCCSCCSCSSSCCSSCTTCCCCCBCCSCTTCCCCBCSGGGHHHHHHHHSSSCTTTCCEEECTTTCCEEEG
T ss_pred cccccCCccCcccceeecCCCCCccccccCCccCCccchHHHHHHHHhCCCccccccccCCCCCCCCCcCCc
Confidence 3455678899999998766 211 479999999999999985321 1479999998874
No 70
>1vyx_A ORF K3, K3RING; zinc-binding protein, ring domain, cross-brace motif; NMR {Human herpesvirus 8} SCOP: g.44.1.3
Probab=98.31 E-value=5.2e-07 Score=61.17 Aligned_cols=50 Identities=26% Similarity=0.518 Sum_probs=40.7
Q ss_pred CCCccccccccCCCCcEEcccC--C---ccCHhHHHHHHHhcCCCCCCCccccccc
Q 027545 26 AGGFECNICFELAQDPIVTLCG--H---LFCWPCLYRWLHHHSHSQECPVCKAVVQ 76 (222)
Q Consensus 26 ~~~~~C~ICl~~~~~pv~l~CG--H---~FC~~Cl~~wl~~~~~~~~CPvCr~~v~ 76 (222)
++...|.||++...++.++||. + .+|..||.+|+..+ .+..||+|+..+.
T Consensus 4 ~~~~~CrIC~~~~~~~l~~PC~C~gs~~~~H~~Cl~~W~~~~-~~~~C~~C~~~~~ 58 (60)
T 1vyx_A 4 EDVPVCWICNEELGNERFRACGCTGELENVHRSCLSTWLTIS-RNTACQICGVVYN 58 (60)
T ss_dssp CSCCEETTTTEECSCCCCCSCCCSSGGGSCCHHHHHHHHHHH-TCSBCTTTCCBCC
T ss_pred CCCCEeEEeecCCCCceecCcCCCCchhhhHHHHHHHHHHhC-CCCccCCCCCeee
Confidence 4567899999987777778865 4 79999999999864 3579999998765
No 71
>3vk6_A E3 ubiquitin-protein ligase hakai; HYB, phosphotyrosine binding domain; 1.90A {Mus musculus}
Probab=97.73 E-value=1.7e-05 Score=58.88 Aligned_cols=48 Identities=25% Similarity=0.514 Sum_probs=37.9
Q ss_pred cccccccCCCCc-EEcccCCccCHhHHHHHHHhcCCCCCCCcccccccccc
Q 027545 30 ECNICFELAQDP-IVTLCGHLFCWPCLYRWLHHHSHSQECPVCKAVVQEEK 79 (222)
Q Consensus 30 ~C~ICl~~~~~p-v~l~CGH~FC~~Cl~~wl~~~~~~~~CPvCr~~v~~~~ 79 (222)
-|++|--.+..- ..+||.|.||..|+..|.+. ....||.|+..+..-+
T Consensus 3 fC~~C~~Pi~iygRmIPCkHvFCydCa~~~~~~--~~k~Cp~C~~~V~rVe 51 (101)
T 3vk6_A 3 FCDKCGLPIKVYGRMIPCKHVFCYDCAILHEKK--GDKMCPGCSDPVQRIE 51 (101)
T ss_dssp BCTTTCSBCSEEEEEETTCCEEEHHHHHHHHHT--TCCBCTTTCCBCSEEE
T ss_pred ecCccCCCeEEEeeeccccccHHHHHHHHHHhc--cCCCCcCcCCeeeeeE
Confidence 378887666544 55799999999999999873 4679999999988433
No 72
>3nw0_A Non-structural maintenance of chromosomes element homolog; E3 ligase, Zn, metal binding protein; 2.92A {Homo sapiens}
Probab=97.03 E-value=0.00045 Score=58.82 Aligned_cols=50 Identities=24% Similarity=0.573 Sum_probs=40.9
Q ss_pred CCccccccccCCCCcEEc-ccCCccCHhHHHHHHHhcCCCCCCCcccccccc
Q 027545 27 GGFECNICFELAQDPIVT-LCGHLFCWPCLYRWLHHHSHSQECPVCKAVVQE 77 (222)
Q Consensus 27 ~~~~C~ICl~~~~~pv~l-~CGH~FC~~Cl~~wl~~~~~~~~CPvCr~~v~~ 77 (222)
...+|.||.+.....+.- .|+|.||..|+..|++.+ ....||.|+.....
T Consensus 179 ~i~~C~iC~~iv~~g~~C~~C~~~~H~~C~~~~~~~~-~~~~CP~C~~~W~~ 229 (238)
T 3nw0_A 179 AVKICNICHSLLIQGQSCETCGIRMHLPCVAKYFQSN-AEPRCPHCNDYWPH 229 (238)
T ss_dssp TCCBCTTTCSBCSSCEECSSSCCEECHHHHHHHTTTC-SSCBCTTTCCBCCS
T ss_pred CCCcCcchhhHHhCCcccCccChHHHHHHHHHHHHhC-CCCCCCCCCCCCCC
Confidence 367899999988766553 599999999999999853 35699999998764
No 73
>2ko5_A Ring finger protein Z; lassa fever virus-Z, negative regulator of EIF4E, cytoplasm, HOST-virus interaction, lipoprotein, membrane; NMR {Lassa virus josiah}
Probab=96.90 E-value=0.0058 Score=44.72 Aligned_cols=51 Identities=27% Similarity=0.593 Sum_probs=38.2
Q ss_pred CCCCCccccccccCCCCcEEcccCCccCHhHHHHHHHhcCCCCCCCccccccccc
Q 027545 24 NDAGGFECNICFELAQDPIVTLCGHLFCWPCLYRWLHHHSHSQECPVCKAVVQEE 78 (222)
Q Consensus 24 ~~~~~~~C~ICl~~~~~pv~l~CGH~FC~~Cl~~wl~~~~~~~~CPvCr~~v~~~ 78 (222)
..-+.+.|..|+-..+ ..+.-..|-.|..||...+. .+..||+|+..+..+
T Consensus 24 s~~G~~nCKsCWf~~k-~LV~C~dHYLCl~CLtlmL~---~SdrCpIC~~pLPtk 74 (99)
T 2ko5_A 24 THLGPQFCKSCWFENK-GLVECNNHYLCLNCLTLLLS---VSNRCPICKMPLPTK 74 (99)
T ss_dssp CCSCCCCCCSSCSCCS-SEEECSSCEEEHHHHHHTCS---SSSEETTTTEECCCC
T ss_pred cccCcccChhhccccC-CeeeecchhhHHHHHHHHHh---hccCCcccCCcCCcc
Confidence 3446678999996444 33444588999999988777 567999999988743
No 74
>3m62_A Ubiquitin conjugation factor E4; armadillo-like repeats, UBL conjugation pathway, DNA damage, nucleus, phosphoprotein; HET: 1PE; 2.40A {Saccharomyces cerevisiae} PDB: 3m63_A* 2qiz_A 2qj0_A
Probab=96.67 E-value=0.001 Score=66.51 Aligned_cols=64 Identities=11% Similarity=0.149 Sum_probs=56.2
Q ss_pred CCCCCCccccccccCCCCcEEcccC-CccCHhHHHHHHHhcCCCCCCCcccccccccccccccCCCCC
Q 027545 23 ANDAGGFECNICFELAQDPIVTLCG-HLFCWPCLYRWLHHHSHSQECPVCKAVVQEEKLVPLYGRGKT 89 (222)
Q Consensus 23 ~~~~~~~~C~ICl~~~~~pv~l~CG-H~FC~~Cl~~wl~~~~~~~~CPvCr~~v~~~~l~p~~~~~~~ 89 (222)
....+.+.|||-.+.++|||+++.| ++|-..+|.+|+.. ..+||+-|+++..++++|++.....
T Consensus 886 ~~iP~~F~cPIs~~lM~DPVilpsG~~TydR~~I~~wl~~---~~tdP~Tr~~L~~~~liPN~~Lk~~ 950 (968)
T 3m62_A 886 GDVPDEFLDPLMYTIMKDPVILPASKMNIDRSTIKAHLLS---DSTDPFNRMPLKLEDVTPNEELRQK 950 (968)
T ss_dssp CCSCGGGBCTTTCSBCSSEEECTTTCCEEEHHHHHHHHTT---CCBCTTTCCBCCGGGCEECHHHHHH
T ss_pred cCCcHHhCCcchhhHHhCCeEcCCCCEEECHHHHHHHHhc---CCCCCCCCCCCCcccccccHHHHHH
Confidence 4556789999999999999999998 58999999999984 4589999999999999999876554
No 75
>2jun_A Midline-1; B-BOX, TRIM, ring finger, alternative splicing, coiled coil, cytoplasm, cytoskeleton, disease mutation, ligase, metal-binding; NMR {Homo sapiens}
Probab=96.27 E-value=0.002 Score=46.88 Aligned_cols=32 Identities=28% Similarity=0.525 Sum_probs=27.3
Q ss_pred CCccccccccC-CCCcEE--cccCCccCHhHHHHH
Q 027545 27 GGFECNICFEL-AQDPIV--TLCGHLFCWPCLYRW 58 (222)
Q Consensus 27 ~~~~C~ICl~~-~~~pv~--l~CGH~FC~~Cl~~w 58 (222)
++..|.||.+. ..+++. +.|+|.||..|+..+
T Consensus 2 ee~~C~~C~~~~~~~av~~C~~C~~~~C~~Cl~~~ 36 (101)
T 2jun_A 2 EKVLCQFCDQDPAQDAVKTCVTCEVSYCDECLKAT 36 (101)
T ss_dssp CCCBCTTCCSSSCCBCCEEETTTTEEECHHHHHHH
T ss_pred CCCCCcCCCCCCCCCceEECCcCChHHhHHHCHHH
Confidence 46789999975 677887 899999999999873
No 76
>2cs3_A Protein C14ORF4, MY039 protein; ZF-C3HC4 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.44.1.3
Probab=96.09 E-value=0.0071 Score=43.09 Aligned_cols=38 Identities=32% Similarity=0.804 Sum_probs=31.6
Q ss_pred CCCCccccccccCCCCcEEccc----CCccCHhHHHHHHHhc
Q 027545 25 DAGGFECNICFELAQDPIVTLC----GHLFCWPCLYRWLHHH 62 (222)
Q Consensus 25 ~~~~~~C~ICl~~~~~pv~l~C----GH~FC~~Cl~~wl~~~ 62 (222)
....+.|.+|.+.+.|-....| +|.||.+|-...++.+
T Consensus 12 ~~a~l~CtlC~erLEdtHFVQCPsv~~HkFCFpCsr~sIk~q 53 (93)
T 2cs3_A 12 NSGPLCCTICHERLEDTHFVQCPSVPSHKFCFPCSRESIKAQ 53 (93)
T ss_dssp SCCSCCCSSSCSCCSSTTSEECSSCSSCEECHHHHHHHHHHH
T ss_pred CCCeeEeecchhhhccCceeeCCCccCCeeeccccHHHHHhc
Confidence 4677899999999998755444 8999999999998854
No 77
>3i2d_A E3 SUMO-protein ligase SIZ1; signal transduction, replication, ring E3, PIAS, ubiquitin, UBC9, metal-binding, nucleus; 2.60A {Saccharomyces cerevisiae}
Probab=88.54 E-value=0.39 Score=43.19 Aligned_cols=55 Identities=29% Similarity=0.607 Sum_probs=41.1
Q ss_pred CCccccccccCCCCcEE-cccCCccCHhHHHHHHH--hcCCCCCCCccccccccccccc
Q 027545 27 GGFECNICFELAQDPIV-TLCGHLFCWPCLYRWLH--HHSHSQECPVCKAVVQEEKLVP 82 (222)
Q Consensus 27 ~~~~C~ICl~~~~~pv~-l~CGH~FC~~Cl~~wl~--~~~~~~~CPvCr~~v~~~~l~p 82 (222)
-.+.|||-...++.|+. ..|.|+-|..-. .|++ .+.....||+|.+.+..++|+.
T Consensus 248 vSL~CPlS~~ri~~PvRg~~C~HlQCFDl~-sfL~~~~~~~~W~CPIC~k~~~~~dL~I 305 (371)
T 3i2d_A 248 MSLQCPISYTRMKYPSKSINCKHLQCFDAL-WFLHSQLQIPTWQCPVCQIDIALENLAI 305 (371)
T ss_dssp EESBCTTTSSBCSSEEEETTCCSSCCEEHH-HHHHHHHHSCCCBCTTTCCBCCGGGEEE
T ss_pred EeecCCCccccccccCcCCcCCCcceECHH-HHHHHhhcCCceeCCCCCcccCHHHeeE
Confidence 45789999999999988 489999776642 3333 2246789999999987766543
No 78
>4fo9_A E3 SUMO-protein ligase PIAS2; E3 ligase, pinit domain, SP-ring domain, structural GE consortium, SGC; 2.39A {Homo sapiens} PDB: 2asq_B
Probab=86.57 E-value=0.6 Score=41.84 Aligned_cols=54 Identities=24% Similarity=0.460 Sum_probs=40.5
Q ss_pred CCccccccccCCCCcEE-cccCCccCHhHHHHHHH--hcCCCCCCCcccccccccccc
Q 027545 27 GGFECNICFELAQDPIV-TLCGHLFCWPCLYRWLH--HHSHSQECPVCKAVVQEEKLV 81 (222)
Q Consensus 27 ~~~~C~ICl~~~~~pv~-l~CGH~FC~~Cl~~wl~--~~~~~~~CPvCr~~v~~~~l~ 81 (222)
-.+.|||-...++.|+. ..|.|+-|..-. .|+. .+.....||+|.+.+..++++
T Consensus 214 vSL~CPlS~~ri~~P~Rg~~C~HlqCFDl~-sfL~~~~~~~~W~CPiC~k~~~~~dL~ 270 (360)
T 4fo9_A 214 VSLMCPLGKMRLTIPCRAVTCTHLQCFDAA-LYLQMNEKKPTWICPVCDKKAAYESLI 270 (360)
T ss_dssp EESBCTTTCSBCSSEEEETTCCCCCCEEHH-HHHHHHHHSCCCBCTTTCSBCCGGGEE
T ss_pred EeeeCCCccceeccCCcCCCCCCCccCCHH-HHHHHHhhCCCeECCCCCcccCHHHeE
Confidence 35789999999999988 589999776533 3333 224578999999998876654
No 79
>1x64_A Alpha-actinin-2 associated LIM protein; LIM domain, PDZ and LIM domain 3, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: g.39.1.3 g.39.1.3
Probab=86.47 E-value=1.2 Score=31.02 Aligned_cols=44 Identities=14% Similarity=0.233 Sum_probs=32.8
Q ss_pred CCCCCccccccccCCCCcEEcccCCccCHhHHHHHHHhcCCCCCCCccccccccc
Q 027545 24 NDAGGFECNICFELAQDPIVTLCGHLFCWPCLYRWLHHHSHSQECPVCKAVVQEE 78 (222)
Q Consensus 24 ~~~~~~~C~ICl~~~~~pv~l~CGH~FC~~Cl~~wl~~~~~~~~CPvCr~~v~~~ 78 (222)
.......|..|.+.+.+.++..-+..||..|+ +|-.|+..+...
T Consensus 21 ~~~~~~~C~~C~~~I~~~~~~a~~~~~H~~CF-----------~C~~C~~~L~~~ 64 (89)
T 1x64_A 21 SAQRMPLCDKCGSGIVGAVVKARDKYRHPECF-----------VCADCNLNLKQK 64 (89)
T ss_dssp CCCSCCBCTTTCCBCCSCCEESSSCEECTTTC-----------CCSSSCCCTTTS
T ss_pred CCCcCCCcccCCCEecccEEEECCceECccCC-----------EecCCCCCCCCC
Confidence 44456789999998887766677777877764 588888887643
No 80
>2lv9_A Histone-lysine N-methyltransferase MLL5; zinc finger, transcription, protein binding, NESG, northeast structural genomics consortium, SGC; NMR {Homo sapiens}
Probab=83.93 E-value=0.26 Score=35.86 Aligned_cols=52 Identities=17% Similarity=0.286 Sum_probs=32.7
Q ss_pred CCCCCCCCccccccccCCCCcEEc---ccCCccCHhHHHHHHHhcCCCCCCCcccc
Q 027545 21 NSANDAGGFECNICFELAQDPIVT---LCGHLFCWPCLYRWLHHHSHSQECPVCKA 73 (222)
Q Consensus 21 ~~~~~~~~~~C~ICl~~~~~pv~l---~CGH~FC~~Cl~~wl~~~~~~~~CPvCr~ 73 (222)
+....++...| ||.....+...+ .|.-.|+..|+..-...-.....||.|+.
T Consensus 21 dg~~~~d~vrC-iC~~~~~~~~mi~Cd~C~~w~H~~C~~~~~~~~p~~w~C~~C~~ 75 (98)
T 2lv9_A 21 DGSYGTDVTRC-ICGFTHDDGYMICCDKCSVWQHIDCMGIDRQHIPDTYLCERCQP 75 (98)
T ss_dssp TCCCCCCBCCC-TTSCCSCSSCEEEBTTTCBEEETTTTTCCTTSCCSSBCCTTTSS
T ss_pred cCCCCCCCEEe-ECCCccCCCcEEEcCCCCCcCcCcCCCCCccCCCCCEECCCCcC
Confidence 33444556778 897665444333 67788899998643222234579999974
No 81
>1weo_A Cellulose synthase, catalytic subunit (IRX3); structure genomics, ring-finger, riken structural genomics/proteomics initiative, RSGI; NMR {Arabidopsis thaliana} SCOP: g.44.1.1
Probab=83.33 E-value=10 Score=27.25 Aligned_cols=54 Identities=28% Similarity=0.578 Sum_probs=37.3
Q ss_pred CCccccccccCCC---Cc-EE---cccCCccCHhHHHHHHHhcCCCCCCCccccccccccccc
Q 027545 27 GGFECNICFELAQ---DP-IV---TLCGHLFCWPCLYRWLHHHSHSQECPVCKAVVQEEKLVP 82 (222)
Q Consensus 27 ~~~~C~ICl~~~~---~p-v~---l~CGH~FC~~Cl~~wl~~~~~~~~CPvCr~~v~~~~l~p 82 (222)
..-.|.||-|..- +. +. -.|+--.|.+|+.--.+ ..++.||.|+......+-.|
T Consensus 15 ~~qiCqiCGD~VG~~~~Ge~FVAC~eC~FPvCrpCyEYErk--eG~q~CpqCktrYkr~kgsp 75 (93)
T 1weo_A 15 DGQFCEICGDQIGLTVEGDLFVACNECGFPACRPCYEYERR--EGTQNCPQCKTRYKRLRGSP 75 (93)
T ss_dssp SSCBCSSSCCBCCBCSSSSBCCSCSSSCCCCCHHHHHHHHH--TSCSSCTTTCCCCCCCTTCC
T ss_pred CCCccccccCccccCCCCCEEEeeeccCChhhHHHHHHHHh--ccCccccccCCccccccCCC
Confidence 4467999998752 11 22 26888899999964333 46889999999887554433
No 82
>2lri_C Autoimmune regulator; Zn binding protein domain, apeced, transcription; NMR {Homo sapiens}
Probab=83.06 E-value=1 Score=30.38 Aligned_cols=48 Identities=23% Similarity=0.553 Sum_probs=33.2
Q ss_pred CCCCccccccccCCCCcEE--cccCCccCHhHHHHHHHhc-CCCCCCCccccc
Q 027545 25 DAGGFECNICFELAQDPIV--TLCGHLFCWPCLYRWLHHH-SHSQECPVCKAV 74 (222)
Q Consensus 25 ~~~~~~C~ICl~~~~~pv~--l~CGH~FC~~Cl~~wl~~~-~~~~~CPvCr~~ 74 (222)
.....+|.||.+.- .++ -.|...||..|+...+... ...-.|+.|++.
T Consensus 9 ~~~~~~C~vC~~~~--~ll~Cd~C~~~~H~~Cl~P~l~~~P~g~W~C~~C~~~ 59 (66)
T 2lri_C 9 LAPGARCGVCGDGT--DVLRCTHCAAAFHWRCHFPAGTSRPGTGLRCRSCSGD 59 (66)
T ss_dssp CCTTCCCTTTSCCT--TCEECSSSCCEECHHHHCTTTCCCCSSSCCCTTTTTC
T ss_pred CCCCCCcCCCCCCC--eEEECCCCCCceecccCCCccCcCCCCCEECccccCC
Confidence 34456699998642 233 2799999999997666532 245789999764
No 83
>1x62_A C-terminal LIM domain protein 1; PDZ and LIM domain protein 1, LIM domain protein CLP-36, contractIle protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=79.51 E-value=1.7 Score=29.52 Aligned_cols=41 Identities=17% Similarity=0.206 Sum_probs=30.7
Q ss_pred CCCccccccccCCCCcEEcccCCccCHhHHHHHHHhcCCCCCCCcccccccc
Q 027545 26 AGGFECNICFELAQDPIVTLCGHLFCWPCLYRWLHHHSHSQECPVCKAVVQE 77 (222)
Q Consensus 26 ~~~~~C~ICl~~~~~pv~l~CGH~FC~~Cl~~wl~~~~~~~~CPvCr~~v~~ 77 (222)
.....|.-|.+.+.+.++..-+..||..|+ +|-.|+..+..
T Consensus 13 ~~~~~C~~C~~~I~~~~~~a~~~~~H~~CF-----------~C~~C~~~L~~ 53 (79)
T 1x62_A 13 QKLPMCDKCGTGIVGVFVKLRDRHRHPECY-----------VCTDCGTNLKQ 53 (79)
T ss_dssp CCCCCCSSSCCCCCSSCEECSSCEECTTTT-----------SCSSSCCCHHH
T ss_pred CCCCccccCCCCccCcEEEECcceeCcCcC-----------eeCCCCCCCCC
Confidence 345679999998877777777877777764 58888887753
No 84
>1wen_A Inhibitor of growth family, member 4; ING1-like protein; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: g.50.1.2 PDB: 1wes_A
Probab=79.38 E-value=1.3 Score=30.32 Aligned_cols=53 Identities=17% Similarity=0.459 Sum_probs=33.1
Q ss_pred CCCCCCCCccccccccCCCCcEEc--c--cC-CccCHhHHHHHHHhc-CCCCCCCccccccc
Q 027545 21 NSANDAGGFECNICFELAQDPIVT--L--CG-HLFCWPCLYRWLHHH-SHSQECPVCKAVVQ 76 (222)
Q Consensus 21 ~~~~~~~~~~C~ICl~~~~~pv~l--~--CG-H~FC~~Cl~~wl~~~-~~~~~CPvCr~~v~ 76 (222)
......+...| ||.......++. . |. ..||..|+. +... .....||.|+..-.
T Consensus 9 ~~~d~~~~~~C-~C~~~~~g~MI~CD~~~C~~~wfH~~Cvg--l~~~p~g~w~Cp~C~~~~~ 67 (71)
T 1wen_A 9 MPVDPNEPTYC-LCHQVSYGEMIGCDNPDCSIEWFHFACVG--LTTKPRGKWFCPRCSQESG 67 (71)
T ss_dssp CCCCTTSCCCS-TTCCCSCSSEECCSCSSCSCCCEETTTTT--CSSCCSSCCCCTTTSSCSS
T ss_pred cccCCCCCCEE-ECCCCCCCCEeEeeCCCCCCccEecccCC--cCcCCCCCEECCCCCcccc
Confidence 33444566778 898865444432 3 65 579999986 3321 24678999976543
No 85
>1weu_A Inhibitor of growth family, member 4; structural genomics, PHD domain, ING1-like protein, DNA binding protein, NPPSFA; NMR {Mus musculus} SCOP: g.50.1.2
Probab=79.11 E-value=2.3 Score=30.58 Aligned_cols=49 Identities=18% Similarity=0.482 Sum_probs=30.3
Q ss_pred CCCCccccccccCCCCcEEc--c--cC-CccCHhHHHHHHHh-cCCCCCCCccccccc
Q 027545 25 DAGGFECNICFELAQDPIVT--L--CG-HLFCWPCLYRWLHH-HSHSQECPVCKAVVQ 76 (222)
Q Consensus 25 ~~~~~~C~ICl~~~~~pv~l--~--CG-H~FC~~Cl~~wl~~-~~~~~~CPvCr~~v~ 76 (222)
..+...| ||.......++. . |. .-||..|+. +.. -.....||.|+....
T Consensus 33 ~~e~~yC-iC~~~~~g~MI~CD~~dC~~~WfH~~CVg--l~~~p~g~W~Cp~C~~~~~ 87 (91)
T 1weu_A 33 PNEPTYC-LCHQVSYGEMIGCDNPDCSIEWFHFACVG--LTTKPRGKWFCPRCSQESG 87 (91)
T ss_dssp SCCCBCS-TTCCBCCSCCCCCSCSSCSCCCCCSTTTT--CSSCCCSSCCCTTTCCCCS
T ss_pred CCCCcEE-ECCCCCCCCEeEecCCCCCCCCEecccCC--cCcCCCCCEECcCccCcCC
Confidence 3455678 998865433222 3 55 579999986 222 124678999976543
No 86
>1wem_A Death associated transcription factor 1; structural genomics, PHD domain, death inducer- obliterator 1(DIO-1); NMR {Mus musculus} SCOP: g.50.1.2
Probab=77.90 E-value=1 Score=30.87 Aligned_cols=52 Identities=21% Similarity=0.510 Sum_probs=32.8
Q ss_pred CCCCCCCccccccccCCCCc-EE--cccCCccCHhHHHHH------HHhcCCCCCCCccccc
Q 027545 22 SANDAGGFECNICFELAQDP-IV--TLCGHLFCWPCLYRW------LHHHSHSQECPVCKAV 74 (222)
Q Consensus 22 ~~~~~~~~~C~ICl~~~~~p-v~--l~CGH~FC~~Cl~~w------l~~~~~~~~CPvCr~~ 74 (222)
...+.....| ||.....+. ++ -.|..-||..|+.-- +........||.|+..
T Consensus 10 ~~~d~~~~~C-~C~~~~~~~~MI~Cd~C~~WfH~~Cvgl~~~~~~~l~~~~~~~~C~~C~~~ 70 (76)
T 1wem_A 10 EVYDPNALYC-ICRQPHNNRFMICCDRCEEWFHGDCVGISEARGRLLERNGEDYICPNCTIL 70 (76)
T ss_dssp CSCCTTCCCS-TTCCCCCSSCEEECSSSCCEEEHHHHSCCHHHHHHHHHHTCCCCCHHHHHH
T ss_pred cccCCCCCEE-ECCCccCCCCEEEeCCCCCcEeCeEEccchhhhhhccCCCCeEECcCCcCc
Confidence 3444456778 898876542 33 268888999998421 1111357899999764
No 87
>1wev_A Riken cDNA 1110020M19; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, gene regulation; NMR {Mus musculus} SCOP: g.50.1.2
Probab=77.23 E-value=0.13 Score=36.84 Aligned_cols=56 Identities=16% Similarity=0.395 Sum_probs=37.3
Q ss_pred CCCCCCCCccccccccCCC---CcEEc--ccCCccCHhHHHHHHH-----hcCCCCCCCccccccc
Q 027545 21 NSANDAGGFECNICFELAQ---DPIVT--LCGHLFCWPCLYRWLH-----HHSHSQECPVCKAVVQ 76 (222)
Q Consensus 21 ~~~~~~~~~~C~ICl~~~~---~pv~l--~CGH~FC~~Cl~~wl~-----~~~~~~~CPvCr~~v~ 76 (222)
++...+.+..|.||...-. +.+++ .|...||..|+..-+. .-.....|+.|+....
T Consensus 9 dd~~~e~~~~C~vC~~~~~~~~~~ll~CD~C~~~yH~~Cl~Ppl~~~~~~~p~g~W~C~~C~~~~~ 74 (88)
T 1wev_A 9 DDFAMEMGLACVVCRQMTVASGNQLVECQECHNLYHQDCHKPQVTDKEVNDPRLVWYCARCTRQMK 74 (88)
T ss_dssp CCCHHHHCCSCSSSCCCCCCTTCCEEECSSSCCEEETTTSSSCCCHHHHHCTTCCCCCHHHHHHHC
T ss_pred ccccCCCCCcCCCCCCCCCCCCCceEECCCCCCeEcCccCCCcccccccCCCCCCeeCccccchhh
Confidence 3333445678999997643 44554 7888999999975443 1235678999977544
No 88
>2k16_A Transcription initiation factor TFIID subunit 3; protein, alternative splicing, metal-binding, nucleus, phosphoprotein, transcription regulation; NMR {Mus musculus} PDB: 2k17_A*
Probab=75.72 E-value=0.5 Score=32.35 Aligned_cols=53 Identities=17% Similarity=0.464 Sum_probs=34.9
Q ss_pred CCCCccccccccCCCCc-EEc--ccCCccCHhHHHHHHHhc-CCCCCCCcccccccc
Q 027545 25 DAGGFECNICFELAQDP-IVT--LCGHLFCWPCLYRWLHHH-SHSQECPVCKAVVQE 77 (222)
Q Consensus 25 ~~~~~~C~ICl~~~~~p-v~l--~CGH~FC~~Cl~~wl~~~-~~~~~CPvCr~~v~~ 77 (222)
..+...|.||....... .+. .|...||..|+..-.... .....||.|+..+..
T Consensus 15 ~~~~~~C~~C~~~~~~~~mi~CD~C~~wfH~~Cv~~~~~~~~~~~w~C~~C~~~~~k 71 (75)
T 2k16_A 15 GNQIWICPGCNKPDDGSPMIGCDDCDDWYHWPCVGIMAAPPEEMQWFCPKCANKIKK 71 (75)
T ss_dssp SCEEECBTTTTBCCSSCCEEECSSSSSEEEHHHHTCSSCCCSSSCCCCTTTHHHHCS
T ss_pred CCCCcCCCCCCCCCCCCCEEEcCCCCcccccccCCCCccCCCCCCEEChhccCchhh
Confidence 44556799998765432 332 688889999986433211 135789999887653
No 89
>1wd2_A Ariadne-1 protein homolog; ring, IBR, triad, zinc finger, ligase; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=74.00 E-value=0.52 Score=31.31 Aligned_cols=34 Identities=35% Similarity=0.819 Sum_probs=23.3
Q ss_pred CccccccccCCCCc-----EEc-c--cCCccCHhHHHHHHHh
Q 027545 28 GFECNICFELAQDP-----IVT-L--CGHLFCWPCLYRWLHH 61 (222)
Q Consensus 28 ~~~C~ICl~~~~~p-----v~l-~--CGH~FC~~Cl~~wl~~ 61 (222)
.-.||-|...++.. ++- . |++.|||.|...|-..
T Consensus 6 ~k~CP~C~~~Iek~~GCnhmtC~~~~C~~~FCw~C~~~~~~~ 47 (60)
T 1wd2_A 6 TKECPKCHVTIEKDGGCNHMVCRNQNCKAEFCWVCLGPWEPH 47 (60)
T ss_dssp CCCCTTTCCCCSSCCSCCSSSCCSSGGGSCCSSSSCSCSGGG
T ss_pred ceECcCCCCeeEeCCCCCcEEECCCCcCCEEeeCcCCCcccC
Confidence 34688887665432 222 3 9999999999888654
No 90
>1wil_A KIAA1045 protein; ring finger domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: g.50.1.3
Probab=70.47 E-value=6.7 Score=27.94 Aligned_cols=39 Identities=21% Similarity=0.392 Sum_probs=27.0
Q ss_pred CCCCCCCCCCccccccccCCCCcEEc---ccCCccCHhHHHHH
Q 027545 19 VGNSANDAGGFECNICFELAQDPIVT---LCGHLFCWPCLYRW 58 (222)
Q Consensus 19 ~~~~~~~~~~~~C~ICl~~~~~pv~l---~CGH~FC~~Cl~~w 58 (222)
.+..+....+..|.||-..- .-..+ -|+-.||..|+.+.
T Consensus 6 ~~~~e~~~~D~~C~VC~~~t-~~~l~pCRvC~RvfH~~CL~r~ 47 (89)
T 1wil_A 6 SGPREPVVNDEMCDVCEVWT-AESLFPCRVCTRVFHDGCLRRM 47 (89)
T ss_dssp CCSCCCCCCSCCCTTTCCCC-SSCCSSCSSSSSCCCHHHHHHH
T ss_pred cCcccCCCCCcccCcccccc-ccceeccccccccccHhhcccc
Confidence 44455566788899997432 22333 58999999999875
No 91
>2l43_A N-teminal domain from histone H3.3, linker, PHD1 from bromodomain-containing protein...; PHD finger, histone CODE, transcription; NMR {Homo sapiens}
Probab=67.36 E-value=2.3 Score=30.22 Aligned_cols=55 Identities=15% Similarity=0.198 Sum_probs=35.5
Q ss_pred CCCCCCccccccccCC--CC-cEEc--ccCCccCHhHHHHHHHhcCCCCCCCccccccccc
Q 027545 23 ANDAGGFECNICFELA--QD-PIVT--LCGHLFCWPCLYRWLHHHSHSQECPVCKAVVQEE 78 (222)
Q Consensus 23 ~~~~~~~~C~ICl~~~--~~-pv~l--~CGH~FC~~Cl~~wl~~~~~~~~CPvCr~~v~~~ 78 (222)
...+++..|.||.+.- .+ .+++ .|.-.|+..|+..-+.. .....||.|.......
T Consensus 20 ~~~~~~~~C~vC~~~~s~~~~~ll~CD~C~~~fH~~Cl~p~~vP-~g~W~C~~C~~~~~~~ 79 (88)
T 2l43_A 20 SLIDEDAVCSICMDGESQNSNVILFCDMCNLAVHQECYGVPYIP-EGQWLCRHCLQSRARP 79 (88)
T ss_dssp CCCCCCCCCSSCCSSSSCSEEEEEECSSSCCCCCHHHHTCSSCC-SSCCCCHHHHHHTTSC
T ss_pred CcCCCCCcCCcCCCCCCCCCCCEEECCCCCchhhcccCCCCccC-CCceECccccCccchh
Confidence 3445667899999754 12 2332 68888999999643221 2467899998765433
No 92
>1m3v_A FLIN4, fusion of the LIM interacting domain of LDB1 and the N-terminal LIM domain of LMO4...; fusion protein, LMO proteins, metal binding protein; NMR {Mus musculus} SCOP: g.39.1.3 g.39.1.3
Probab=65.96 E-value=3.4 Score=30.52 Aligned_cols=50 Identities=16% Similarity=0.219 Sum_probs=36.6
Q ss_pred CccccccccCCCC---cEEcccCCccCHhHHHHHHHhcCCCCCCCccccccccccc
Q 027545 28 GFECNICFELAQD---PIVTLCGHLFCWPCLYRWLHHHSHSQECPVCKAVVQEEKL 80 (222)
Q Consensus 28 ~~~C~ICl~~~~~---pv~l~CGH~FC~~Cl~~wl~~~~~~~~CPvCr~~v~~~~l 80 (222)
.+.|..|...+.+ .....=|..||..|..+.+. ....|-.|...|....+
T Consensus 32 CF~C~~C~~~L~~~~~~~~~~~g~~yC~~cy~~~f~---~~~~C~~C~~~I~~~~~ 84 (122)
T 1m3v_A 32 CLKCSSCQAQLGDIGTSSYTKSGMILCRNDYIRLFG---NSGAGGSGGHMGSGGDV 84 (122)
T ss_dssp HHCCSSSCCCTTTSEECCEEETTEEECHHHHHHHHC---CCCSSSCSSCCSCCEES
T ss_pred CCCcCCCCCcccccCCeEEEECCeeecHHHHHHHcC---CCCccccCCCCcCchhe
Confidence 4678899888863 34456788999999987654 22379999998886543
No 93
>2l5u_A Chromodomain-helicase-DNA-binding protein 4; CHD4, MI2B, MI2-beta, PHD, protein binding, peptide binding metal binding protein; NMR {Homo sapiens}
Probab=64.43 E-value=3.3 Score=27.17 Aligned_cols=48 Identities=19% Similarity=0.435 Sum_probs=32.2
Q ss_pred CCCCCccccccccCCCCcEEc--ccCCccCHhHHHHHHHhc-CCCCCCCcccc
Q 027545 24 NDAGGFECNICFELAQDPIVT--LCGHLFCWPCLYRWLHHH-SHSQECPVCKA 73 (222)
Q Consensus 24 ~~~~~~~C~ICl~~~~~pv~l--~CGH~FC~~Cl~~wl~~~-~~~~~CPvCr~ 73 (222)
....+..|.||.+. ..++. .|-..||..|+..-+... ...-.||.|++
T Consensus 7 ~~~~~~~C~vC~~~--g~ll~CD~C~~~fH~~Cl~p~l~~~p~g~W~C~~C~~ 57 (61)
T 2l5u_A 7 ETDHQDYCEVCQQG--GEIILCDTCPRAYHMVCLDPDMEKAPEGKWSCPHCEK 57 (61)
T ss_dssp SSCCCSSCTTTSCC--SSEEECSSSSCEEEHHHHCTTCCSCCCSSCCCTTGGG
T ss_pred cCCCCCCCccCCCC--CcEEECCCCChhhhhhccCCCCCCCCCCceECccccc
Confidence 34456779999873 23332 688889999997643321 24678999975
No 94
>3o70_A PHD finger protein 13; PHF13, structural genomics consortium, SGC, structural genom type zinc finger, protein binding, zinc ION binding; 1.85A {Homo sapiens}
Probab=64.22 E-value=0.87 Score=30.88 Aligned_cols=54 Identities=13% Similarity=0.234 Sum_probs=30.5
Q ss_pred CCCCCCCCCCccccccccCCCCcEEc---ccCCccCHhHHHHHHHhcCCCCCCCcccc
Q 027545 19 VGNSANDAGGFECNICFELAQDPIVT---LCGHLFCWPCLYRWLHHHSHSQECPVCKA 73 (222)
Q Consensus 19 ~~~~~~~~~~~~C~ICl~~~~~pv~l---~CGH~FC~~Cl~~wl~~~~~~~~CPvCr~ 73 (222)
..+.....+...| ||.....+...+ .|..-|+..|+.--...-.....||.|+.
T Consensus 10 ~~~~~~~~~~~~C-iC~~~~~~~~MIqCd~C~~WfH~~Cvgi~~~~~~~~~~C~~C~~ 66 (68)
T 3o70_A 10 GRENLYFQGLVTC-FCMKPFAGRPMIECNECHTWIHLSCAKIRKSNVPEVFVCQKCRD 66 (68)
T ss_dssp ----CTTTTCCCS-TTCCCCTTCCEEECTTTCCEEETTTTTCCTTSCCSSCCCHHHHT
T ss_pred ccccCCCCCceEe-ECCCcCCCCCEEECCCCCccccccccCcCcccCCCcEECCCCCC
Confidence 3344555677889 998765543232 57777888887522111124567888864
No 95
>3ttc_A HYPF, transcriptional regulatory protein; Zn finger, nucleotide binding, hydrogenase maturation factor transferase; HET: ADP; 1.86A {Escherichia coli} PDB: 3tsp_A* 3tsu_A* 3ttf_A* 3ttd_A 3tsq_A
Probab=64.11 E-value=2.7 Score=40.51 Aligned_cols=54 Identities=24% Similarity=0.554 Sum_probs=40.0
Q ss_pred CCCCCCCccccccccCCCCcE----------EcccCCcc--------------------CHhHHHHHHHh-----cCCCC
Q 027545 22 SANDAGGFECNICFELAQDPI----------VTLCGHLF--------------------CWPCLYRWLHH-----HSHSQ 66 (222)
Q Consensus 22 ~~~~~~~~~C~ICl~~~~~pv----------~l~CGH~F--------------------C~~Cl~~wl~~-----~~~~~ 66 (222)
.....+-..|+-|+..+.||. -+.||-.| |..|..+|-.. |....
T Consensus 11 ~~i~pD~a~C~~Cl~e~~dp~~Rry~YpF~nCt~CGPR~tii~~lPYDR~~TsM~~F~mC~~C~~EY~dp~dRRfHAqp~ 90 (657)
T 3ttc_A 11 TQIVPDAATCPACLAEMNTPGERRYRYPFINCTHCGPRFTIIRAMPYDRPFTVMAAFPLCPACDKEYRDPLDRRFHAQPV 90 (657)
T ss_dssp -CCCCCBCCCHHHHHHHTSTTSTTTTCTTCCBTTBBCSGGGBSSSSCSGGGBGGGGSCCCHHHHHHHHCTTSTTTTCTTC
T ss_pred cccCCchhhhHHHHHHhcCCCCcccCCccccCcCCCchHHhcccCCCCCCCCcccCCCCChHHHHHhCCCCCCcCcCCCC
Confidence 344556788999999888762 25788877 99999998653 34568
Q ss_pred CCCcccccc
Q 027545 67 ECPVCKAVV 75 (222)
Q Consensus 67 ~CPvCr~~v 75 (222)
.||.|.=.+
T Consensus 91 aCp~CGP~l 99 (657)
T 3ttc_A 91 ACPECGPYL 99 (657)
T ss_dssp CCTTTSCCE
T ss_pred cCcccCccc
Confidence 999996554
No 96
>2dar_A PDZ and LIM domain protein 5; enigma homolog protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=63.85 E-value=8.4 Score=26.57 Aligned_cols=41 Identities=17% Similarity=0.355 Sum_probs=31.6
Q ss_pred CCccccccccCCCCcEEcccCCccCHhHHHHHHHhcCCCCCCCccccccccc
Q 027545 27 GGFECNICFELAQDPIVTLCGHLFCWPCLYRWLHHHSHSQECPVCKAVVQEE 78 (222)
Q Consensus 27 ~~~~C~ICl~~~~~pv~l~CGH~FC~~Cl~~wl~~~~~~~~CPvCr~~v~~~ 78 (222)
....|..|.+.+.+.++..-|..||..|+ .|-.|+..+...
T Consensus 24 ~~~~C~~C~~~I~~~~v~a~~~~~H~~CF-----------~C~~C~~~L~~~ 64 (90)
T 2dar_A 24 RTPMCAHCNQVIRGPFLVALGKSWHPEEF-----------NCAHCKNTMAYI 64 (90)
T ss_dssp CCCBBSSSCCBCCSCEEEETTEEECTTTC-----------BCSSSCCBCSSS
T ss_pred CCCCCccCCCEecceEEEECCccccccCC-----------ccCCCCCCCCCC
Confidence 44669999998887777777888887764 688898887744
No 97
>2d8v_A Zinc finger FYVE domain-containing protein 19; zfyve19, ZF- B_BOX, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: g.43.1.1
Probab=63.62 E-value=4.7 Score=27.32 Aligned_cols=31 Identities=35% Similarity=0.619 Sum_probs=22.6
Q ss_pred CCCccccccccCCCCcEEccc-CCccCHhHHHH
Q 027545 26 AGGFECNICFELAQDPIVTLC-GHLFCWPCLYR 57 (222)
Q Consensus 26 ~~~~~C~ICl~~~~~pv~l~C-GH~FC~~Cl~~ 57 (222)
++..-|.||.+.+. -.-+.| |-+||..|..+
T Consensus 6 ee~pWC~ICneDAt-lrC~gCdgDLYC~rC~rE 37 (67)
T 2d8v_A 6 SGLPWCCICNEDAT-LRCAGCDGDLYCARCFRE 37 (67)
T ss_dssp CCCSSCTTTCSCCC-EEETTTTSEEECSSHHHH
T ss_pred cCCCeeEEeCCCCe-EEecCCCCceehHHHHHH
Confidence 44556999998744 233678 88999999765
No 98
>2rgt_A Fusion of LIM/homeobox protein LHX3, linker, INSU enhancer protein ISL-1; protein-protein complex, LIM domain, Zn finger, activator, D binding; 2.05A {Mus musculus} PDB: 3mmk_A
Probab=62.71 E-value=8 Score=30.02 Aligned_cols=47 Identities=11% Similarity=0.393 Sum_probs=35.4
Q ss_pred CCccccccccCCCCcEEcccCCccCHhHHHHHHHhcCCCCCCCccccccccc
Q 027545 27 GGFECNICFELAQDPIVTLCGHLFCWPCLYRWLHHHSHSQECPVCKAVVQEE 78 (222)
Q Consensus 27 ~~~~C~ICl~~~~~pv~l~CGH~FC~~Cl~~wl~~~~~~~~CPvCr~~v~~~ 78 (222)
+-+.|..|...+.+.....=|..||..|..+... ..|..|...|...
T Consensus 32 ~CF~C~~C~~~L~~~~f~~~g~~yC~~~y~~~f~-----~~C~~C~~~I~~~ 78 (169)
T 2rgt_A 32 KCLKCSDCHVPLAERCFSRGESVYCKDDFFKRFG-----TKCAACQLGIPPT 78 (169)
T ss_dssp TTSBCTTTCCBCCSCCEESSSCEECHHHHHHHHS-----CBCTTTCCBCCTT
T ss_pred ccCccCCCCCcCCCCCcccCCeeeeccccccccc-----ccccccccccCCC
Confidence 5688999988876654456688999999876543 4799998887653
No 99
>1wfl_A Zinc finger protein 216; ZF-AN1 domain, zinc binding, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: g.80.1.1
Probab=61.89 E-value=13 Score=25.73 Aligned_cols=28 Identities=25% Similarity=0.454 Sum_probs=19.5
Q ss_pred CCCccccccccCCCC-cEEcccCCccCHh
Q 027545 26 AGGFECNICFELAQD-PIVTLCGHLFCWP 53 (222)
Q Consensus 26 ~~~~~C~ICl~~~~~-pv~l~CGH~FC~~ 53 (222)
.....|..|...+.- +..=.||..||..
T Consensus 23 ~~~nRC~~CrKkvgL~gf~CrCg~~FCs~ 51 (74)
T 1wfl_A 23 PKKNRCFMCRKKVGLTGFDCRCGNLFCGL 51 (74)
T ss_dssp SCTTBCSSSCCBCGGGCEECTTSCEECSS
T ss_pred CcCCcChhhCCcccccCeecCCCCEechh
Confidence 345689999875332 4555699999974
No 100
>1wep_A PHF8; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, DNA binding protein; NMR {Mus musculus} SCOP: g.50.1.2
Probab=61.80 E-value=11 Score=25.84 Aligned_cols=52 Identities=21% Similarity=0.381 Sum_probs=32.6
Q ss_pred CCCCCCccccccccCCC--CcEE--cccCCccCHhHHHHHHHh--cCCCCCCCcccccc
Q 027545 23 ANDAGGFECNICFELAQ--DPIV--TLCGHLFCWPCLYRWLHH--HSHSQECPVCKAVV 75 (222)
Q Consensus 23 ~~~~~~~~C~ICl~~~~--~pv~--l~CGH~FC~~Cl~~wl~~--~~~~~~CPvCr~~v 75 (222)
..+.+...| ||..... ...+ -.|..-||..|+.--... ......||.|+...
T Consensus 7 ~~~~~~~~C-~C~~~~d~~~~MIqCd~C~~WfH~~Cvgl~~~~~~~~~~~~C~~C~~~~ 64 (79)
T 1wep_A 7 GMALVPVYC-LCRQPYNVNHFMIECGLCQDWFHGSCVGIEEENAVDIDIYHCPDCEAVF 64 (79)
T ss_dssp CCCCCCCCS-TTSCSCCSSSCEEEBTTTCCEEEHHHHTCCHHHHTTCSBBCCTTTTTTS
T ss_pred CccCCccEE-EcCCccCCCCceEEcCCCCCcEEeeecCcccccccCCCeEECCCccccc
Confidence 344566778 8987663 2232 268888999998522211 12568999998754
No 101
>4g9i_A Hydrogenase maturation protein HYPF; zinc finger, ATP binding, carbamoyla transferase; 4.50A {Thermococcus kodakarensis}
Probab=60.57 E-value=6 Score=38.72 Aligned_cols=52 Identities=29% Similarity=0.554 Sum_probs=39.4
Q ss_pred CCCCCccccccccCCCCcE----------EcccCCcc--------------------CHhHHHHHHH-----hcCCCCCC
Q 027545 24 NDAGGFECNICFELAQDPI----------VTLCGHLF--------------------CWPCLYRWLH-----HHSHSQEC 68 (222)
Q Consensus 24 ~~~~~~~C~ICl~~~~~pv----------~l~CGH~F--------------------C~~Cl~~wl~-----~~~~~~~C 68 (222)
...+-..|+-|+..+.||. -+.||-.| |..|..+|-. .|.....|
T Consensus 102 i~pD~a~C~~Cl~e~~dp~~rry~ypF~nCt~CGPR~tii~~lPYDR~~TsM~~F~mC~~C~~EY~dp~dRRfhAqp~aC 181 (772)
T 4g9i_A 102 IPPDIAICDDCLRELFDPTNKRYMYPFIVCTNCGPRFTIIEDLPYDRENTTMKEFPMCDFCRSEYEDPLNRRYHAEPTAC 181 (772)
T ss_dssp CCCCCCCCHHHHHHHSSTTSTTTTCTTCCCTTSSCCGGGCCSSSCCGGGSGGGGSCCCHHHHHHHHCSSSTTTTCTTCCC
T ss_pred cCCchhhhHHHHHHhcCCCCCccCCccccCCCCCchhhhhhcCCCCCCCCcCCCCCCChhHHHHhCCCCCCCCcCCCCCC
Confidence 3456688999999888772 25788877 9999999875 24456899
Q ss_pred Ccccccc
Q 027545 69 PVCKAVV 75 (222)
Q Consensus 69 PvCr~~v 75 (222)
|.|.=.+
T Consensus 182 ~~CGP~l 188 (772)
T 4g9i_A 182 PVCGPSY 188 (772)
T ss_dssp TTTSCCE
T ss_pred ccCCceE
Confidence 9997544
No 102
>3vth_A Hydrogenase maturation factor; carbamoyltransfer, maturation of [NIFE]-hydrogenase, carbamoylphosphate, iron, HYPE; HET: APC AP2; 2.00A {Thermoanaerobacter tengcongensis} PDB: 3vti_A
Probab=60.48 E-value=4 Score=39.97 Aligned_cols=53 Identities=25% Similarity=0.501 Sum_probs=38.7
Q ss_pred CCCCCCccccccccCCCCcE----------EcccCCcc--------------------CHhHHHHHHHh-----cCCCCC
Q 027545 23 ANDAGGFECNICFELAQDPI----------VTLCGHLF--------------------CWPCLYRWLHH-----HSHSQE 67 (222)
Q Consensus 23 ~~~~~~~~C~ICl~~~~~pv----------~l~CGH~F--------------------C~~Cl~~wl~~-----~~~~~~ 67 (222)
....+-..|+-|+..+.||. -+.||-.| |..|..+|-.. |.....
T Consensus 106 ~i~pD~a~C~~Cl~e~~dp~~Rry~ypF~nCt~CGPR~tii~~lPYDR~~TsM~~F~mC~~C~~EY~dp~~RRfhAqp~a 185 (761)
T 3vth_A 106 PVSPDMGVCEDCLRELKDPKDRRYRYPFINCTNCGPRFSIIEDIPYDRAKTSMKVFPMCEKCSREYHDPHDRRFHAQPVA 185 (761)
T ss_dssp CCCCCBCCCHHHHHHHTCTTSTTTTCTTCCBTTBBCSGGGBCSSSCCGGGBGGGGSCCCHHHHHHHTCTTSTTTTCTTCC
T ss_pred ccCCCccccHHHHHHhcCCCccccCCCcccCCCCCcchhhhccCCCCCCCCccccCCCCHHHHHHhcCcccccccCCCCc
Confidence 34456688999999888772 25788665 99999988652 345679
Q ss_pred CCcccccc
Q 027545 68 CPVCKAVV 75 (222)
Q Consensus 68 CPvCr~~v 75 (222)
||.|.=.+
T Consensus 186 C~~CGP~l 193 (761)
T 3vth_A 186 CFDCGPSL 193 (761)
T ss_dssp CTTTSCCE
T ss_pred CCccCCee
Confidence 99995543
No 103
>1x4u_A Zinc finger, FYVE domain containing 27 isoform B; phosphoinositide binding, zinc binding, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=59.69 E-value=5.9 Score=27.54 Aligned_cols=33 Identities=21% Similarity=0.334 Sum_probs=22.7
Q ss_pred CCCCCccccccccCCCCc---E-EcccCCccCHhHHH
Q 027545 24 NDAGGFECNICFELAQDP---I-VTLCGHLFCWPCLY 56 (222)
Q Consensus 24 ~~~~~~~C~ICl~~~~~p---v-~l~CGH~FC~~Cl~ 56 (222)
.+.+...|.+|...+.-- . --.||.+||..|..
T Consensus 10 pd~~~~~C~~C~~~F~~~~RrHHCR~CG~vfC~~Cs~ 46 (84)
T 1x4u_A 10 PTNNFGNCTGCSATFSVLKKRRSCSNCGNSFCSRCCS 46 (84)
T ss_dssp SCCCCSSCSSSCCCCCSSSCCEECSSSCCEECTTTSC
T ss_pred cCCCCCcCcCcCCccccchhhhhhcCCCcEEChhhcC
Confidence 344556799998876422 1 14899999999954
No 104
>1z2q_A LM5-1; membrane protein, FYVE domain, zinc-finger; NMR {Leishmania major}
Probab=59.35 E-value=4.2 Score=28.39 Aligned_cols=53 Identities=19% Similarity=0.366 Sum_probs=31.3
Q ss_pred CCCCccccccccCCCCc---EE-cccCCccCHhHHHHHHHh-----cCCCCCCCcccccccc
Q 027545 25 DAGGFECNICFELAQDP---IV-TLCGHLFCWPCLYRWLHH-----HSHSQECPVCKAVVQE 77 (222)
Q Consensus 25 ~~~~~~C~ICl~~~~~p---v~-l~CGH~FC~~Cl~~wl~~-----~~~~~~CPvCr~~v~~ 77 (222)
+.+...|.+|...+.-- .- -.||++||..|....+.. ......|-.|-..+..
T Consensus 18 d~~~~~C~~C~~~Fs~~~RrHHCR~CG~v~C~~Cs~~~~~lp~~~~~~~~RVC~~C~~~l~~ 79 (84)
T 1z2q_A 18 DEDAPACNGCGCVFTTTVRRHHCRNCGYVLCGDCSRHRAAIPMRGITEPERVCDACYLALRS 79 (84)
T ss_dssp TTTCCBCTTTCCBCCTTSCCEECTTTCCEECTGGGCCEEEETTTTEEEEEECCHHHHHHHHT
T ss_pred CCCCCCCcCcCCccccchhcccccCCCcEEChHHhCCeEeccCCCCCCCCEECHHHHHHHhh
Confidence 34556799998876432 11 489999999997542110 0112456666555443
No 105
>2yt5_A Metal-response element-binding transcription factor 2; zinc-regulated factor 1, ZIRF1, metal-response element DNA-binding protein M96; NMR {Mus musculus}
Probab=59.20 E-value=1.3 Score=29.34 Aligned_cols=51 Identities=20% Similarity=0.377 Sum_probs=33.4
Q ss_pred CCCccccccccCCC---CcEEc--ccCCccCHhHHHHHHHh----cCCCCCCCccccccc
Q 027545 26 AGGFECNICFELAQ---DPIVT--LCGHLFCWPCLYRWLHH----HSHSQECPVCKAVVQ 76 (222)
Q Consensus 26 ~~~~~C~ICl~~~~---~pv~l--~CGH~FC~~Cl~~wl~~----~~~~~~CPvCr~~v~ 76 (222)
.++..|.||..... +.+++ .|.-.||..|+..-+.. -...-.|+.|+....
T Consensus 4 ~~~~~C~vC~~~~~~~~~~ll~Cd~C~~~~H~~C~~p~l~~~~~~p~~~W~C~~C~~~~~ 63 (66)
T 2yt5_A 4 GSSGVCTICQEEYSEAPNEMVICDKCGQGYHQLCHTPHIDSSVIDSDEKWLCRQCVFATT 63 (66)
T ss_dssp CCCCCBSSSCCCCCBTTBCEEECSSSCCEEETTTSSSCCCHHHHHSSCCCCCHHHHHTTS
T ss_pred CCCCCCCCCCCCCCCCCCCEEECCCCChHHHhhhCCCcccccccCCCCCEECCCCcCccc
Confidence 45567999987532 33443 78888999998753321 235678999976544
No 106
>2cot_A Zinc finger protein 435; ADK_LID domain, zinc finger and SCAN domain containing protein 16, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1
Probab=58.42 E-value=23 Score=22.73 Aligned_cols=45 Identities=13% Similarity=0.358 Sum_probs=28.1
Q ss_pred CCCCCCccccccccCCCCcEEcccCCccCHhHHHHHHHhcC--CCCCCCccccccccc
Q 027545 23 ANDAGGFECNICFELAQDPIVTLCGHLFCWPCLYRWLHHHS--HSQECPVCKAVVQEE 78 (222)
Q Consensus 23 ~~~~~~~~C~ICl~~~~~pv~l~CGH~FC~~Cl~~wl~~~~--~~~~CPvCr~~v~~~ 78 (222)
......+.|.+|-..+... .-|...++.+. ....|++|.+.+...
T Consensus 13 ~~~~~~~~C~~C~~~f~~~-----------~~l~~H~~~h~~~~~~~C~~C~~~f~~~ 59 (77)
T 2cot_A 13 QRERRRYKCDECGKSFSHS-----------SDLSKHRRTHTGEKPYKCDECGKAFIQR 59 (77)
T ss_dssp CCCSCSSBCSSSCCBCSCH-----------HHHHHHHTTTCCSCSEECSSSCCEESSH
T ss_pred CCCCCCEECCCCCcccCCH-----------HHHHHHHHHcCCCcCeeCCCCCCccCCH
Confidence 3345678999998766653 23444444332 346899998877643
No 107
>1wfk_A Zinc finger, FYVE domain containing 19; riken structural genomics/proteomics initiative, RSGI, structural genomics, unknown function; NMR {Mus musculus} SCOP: g.50.1.1
Probab=58.41 E-value=3.8 Score=29.01 Aligned_cols=50 Identities=20% Similarity=0.360 Sum_probs=29.6
Q ss_pred CCccccccccCCCCc---E-EcccCCccCHhHHHHHHHh----cCCCCCCCccccccc
Q 027545 27 GGFECNICFELAQDP---I-VTLCGHLFCWPCLYRWLHH----HSHSQECPVCKAVVQ 76 (222)
Q Consensus 27 ~~~~C~ICl~~~~~p---v-~l~CGH~FC~~Cl~~wl~~----~~~~~~CPvCr~~v~ 76 (222)
+...|.+|...+.-- . --.||.+||..|....+.. ......|-.|...+.
T Consensus 8 ~~~~C~~C~~~F~~~~RrHHCR~CG~vfC~~Cs~~~~~lp~~g~~~~RVC~~C~~~l~ 65 (88)
T 1wfk_A 8 MESRCYGCAVKFTLFKKEYGCKNCGRAFCNGCLSFSALVPRAGNTQQKVCKQCHTILT 65 (88)
T ss_dssp CCSBCTTTCCBCCSSSCEEECSSSCCEEETTTSCEEEEETTTTSEEEEECHHHHHHHH
T ss_pred cCCCCcCcCCcccCccccccCCCCCCEEChhHcCCceeccccCCCcCEECHHHHHHHH
Confidence 345699998766432 1 1489999999997542210 012345666655544
No 108
>2yw8_A RUN and FYVE domain-containing protein 1; structure genomics, structural genomics, NPPSFA; 3.00A {Homo sapiens} PDB: 2yqm_A
Probab=58.39 E-value=4.4 Score=28.11 Aligned_cols=33 Identities=27% Similarity=0.574 Sum_probs=23.0
Q ss_pred CCCCccccccccCCCCcE----EcccCCccCHhHHHH
Q 027545 25 DAGGFECNICFELAQDPI----VTLCGHLFCWPCLYR 57 (222)
Q Consensus 25 ~~~~~~C~ICl~~~~~pv----~l~CGH~FC~~Cl~~ 57 (222)
+++...|.+|...+.--. --.||.+||..|...
T Consensus 16 d~~~~~C~~C~~~Fs~~~RrHHCR~CG~v~C~~Cs~~ 52 (82)
T 2yw8_A 16 DDEATHCRQCEKEFSISRRKHHCRNCGHIFCNTCSSN 52 (82)
T ss_dssp CCCCCBCTTTCCBCBTTBCCEECTTTCCEECSGGGCE
T ss_pred CccCCcccCcCCcccCccccccCCCCCCEEChHHhCC
Confidence 334457999988765321 148999999999753
No 109
>1wew_A DNA-binding family protein; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: g.50.1.2
Probab=56.56 E-value=4.9 Score=27.60 Aligned_cols=54 Identities=13% Similarity=0.212 Sum_probs=32.9
Q ss_pred CCCCCCCCCccccccccCCCCcEEc-----ccCCccCHhHHHHHHHh------cCCCCCCCccccc
Q 027545 20 GNSANDAGGFECNICFELAQDPIVT-----LCGHLFCWPCLYRWLHH------HSHSQECPVCKAV 74 (222)
Q Consensus 20 ~~~~~~~~~~~C~ICl~~~~~pv~l-----~CGH~FC~~Cl~~wl~~------~~~~~~CPvCr~~ 74 (222)
++.........| ||.....+...+ .|..-||..|+.---.. ......||.|+..
T Consensus 8 dd~~~~~~~~~C-iC~~~~~~g~MI~CD~~~C~~W~H~~CVgi~~~~~~~~~~~~~~~~C~~C~~~ 72 (78)
T 1wew_A 8 EDPFQPEIKVRC-VCGNSLETDSMIQCEDPRCHVWQHVGCVILPDKPMDGNPPLPESFYCEICRLT 72 (78)
T ss_dssp CCSSSCCCCCCC-SSCCCCCCSCEEECSSTTTCCEEEHHHHSCCCTTTCSCSCSCSSCCCHHHHHC
T ss_pred ccccCCCCCEEe-ECCCcCCCCCEEEECCccCCccccCEEEccccccccccccCCCCEECCCCCcc
Confidence 334444567889 898874333222 57788999998521111 1236789999764
No 110
>1mm2_A MI2-beta; PHD, zinc finger, protein scaffold, DNA binding protein; NMR {Homo sapiens} SCOP: g.50.1.2 PDB: 2l75_A* 1mm3_A
Probab=53.70 E-value=3.3 Score=27.19 Aligned_cols=49 Identities=20% Similarity=0.375 Sum_probs=30.9
Q ss_pred CCCCccccccccCCCCcEEc--ccCCccCHhHHHHHHHhc-CCCCCCCcccccc
Q 027545 25 DAGGFECNICFELAQDPIVT--LCGHLFCWPCLYRWLHHH-SHSQECPVCKAVV 75 (222)
Q Consensus 25 ~~~~~~C~ICl~~~~~pv~l--~CGH~FC~~Cl~~wl~~~-~~~~~CPvCr~~v 75 (222)
+..+..|.||.+.- .++. .|...||..|+..-+... ...-.||.|+...
T Consensus 6 d~~~~~C~vC~~~g--~ll~Cd~C~~~fH~~Cl~ppl~~~p~g~W~C~~C~~~~ 57 (61)
T 1mm2_A 6 DHHMEFCRVCKDGG--ELLCCDTCPSSYHIHCLNPPLPEIPNGEWLCPRCTCPA 57 (61)
T ss_dssp CSSCSSCTTTCCCS--SCBCCSSSCCCBCSSSSSSCCSSCCSSCCCCTTTTTTC
T ss_pred cCCCCcCCCCCCCC--CEEEcCCCCHHHcccccCCCcCcCCCCccCChhhcCch
Confidence 34566699998632 2222 688889999987533321 2356799997643
No 111
>1wg2_A Zinc finger (AN1-like) family protein; riken structural genomics/proteomics initiative, RSGI, structural genomics, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: g.80.1.1
Probab=53.15 E-value=17 Score=24.37 Aligned_cols=30 Identities=20% Similarity=0.319 Sum_probs=20.9
Q ss_pred CCCCCccccccccCCCC-cEEcccCCccCHh
Q 027545 24 NDAGGFECNICFELAQD-PIVTLCGHLFCWP 53 (222)
Q Consensus 24 ~~~~~~~C~ICl~~~~~-pv~l~CGH~FC~~ 53 (222)
.......|..|...+.- +..=.||..||..
T Consensus 11 ~~~~~~rC~~C~kkvgl~~f~CrCg~~FC~~ 41 (64)
T 1wg2_A 11 PVRPNNRCFSCNKKVGVMGFKCKCGSTFCGS 41 (64)
T ss_dssp CSCCSCSCTTTCCCCTTSCEECTTSCEECSS
T ss_pred CCCcCCcChhhCCcccccCeEeecCCEeccc
Confidence 33455789999886443 4445899999974
No 112
>1joc_A EEA1, early endosomal autoantigen 1; FYVE domain, inositol 3-phosphate binding, membrane protein; HET: ITP; 2.20A {Homo sapiens} SCOP: g.50.1.1 h.1.21.1 PDB: 1hyi_A* 1hyj_A
Probab=52.15 E-value=4.2 Score=30.64 Aligned_cols=30 Identities=23% Similarity=0.452 Sum_probs=21.3
Q ss_pred CCccccccccCCCCc----EEcccCCccCHhHHH
Q 027545 27 GGFECNICFELAQDP----IVTLCGHLFCWPCLY 56 (222)
Q Consensus 27 ~~~~C~ICl~~~~~p----v~l~CGH~FC~~Cl~ 56 (222)
+...|.+|...+.-- .--.||++||..|..
T Consensus 68 ~~~~C~~C~~~Fs~~~RrHHCR~CG~vfC~~Cs~ 101 (125)
T 1joc_A 68 EVQNCMACGKGFSVTVRRHHCRQCGNIFCAECSA 101 (125)
T ss_dssp GCCBCTTTCCBCCSSSCCEECTTTCCEECGGGSC
T ss_pred CCCCCcCcCCccccccccccCCCCCeEEChHHhC
Confidence 345799998876422 114899999999964
No 113
>2lbm_A Transcriptional regulator ATRX; metal binding protein-structural protein compl; HET: M3L; NMR {Homo sapiens} PDB: 2ld1_A
Probab=51.86 E-value=9.4 Score=29.59 Aligned_cols=50 Identities=24% Similarity=0.505 Sum_probs=32.8
Q ss_pred CCCCccccccccCCCCcEEcccCCccCHhHHHHHHH--------hcCCCCCCCccccc
Q 027545 25 DAGGFECNICFELAQDPIVTLCGHLFCWPCLYRWLH--------HHSHSQECPVCKAV 74 (222)
Q Consensus 25 ~~~~~~C~ICl~~~~~pv~l~CGH~FC~~Cl~~wl~--------~~~~~~~CPvCr~~ 74 (222)
+..+..|.+|.+--.--.--.|-..||..||..-+. .......||.|+..
T Consensus 60 Dg~~d~C~vC~~GG~LlcCD~Cpr~Fh~~Cl~p~l~~~~l~~i~~p~~~W~C~~C~~~ 117 (142)
T 2lbm_A 60 DGMDEQCRWCAEGGNLICCDFCHNAFCKKCILRNLGRKELSTIMDENNQWYCYICHPE 117 (142)
T ss_dssp TSCBCSCSSSCCCSSEEECSSSCCEEEHHHHHHHTCHHHHHHHHTSTTCCCCTTTCCC
T ss_pred CCCCCeecccCCCCcEEeCCCCCCeeeHhhcCCCCChhhhhhcccCCCCCEeecccCc
Confidence 344567999986432111127888999999986542 12457899999753
No 114
>2jtn_A LIM domain-binding protein 1, LIM/homeobox protein LHX3; intramolecular (fusion) protein-protein complex, protein binding/transcription complex; NMR {Mus musculus}
Probab=51.38 E-value=8.7 Score=30.18 Aligned_cols=25 Identities=12% Similarity=0.602 Sum_probs=13.1
Q ss_pred CCccCHhHHHHHHHhcCCCCCCCccccccc
Q 027545 47 GHLFCWPCLYRWLHHHSHSQECPVCKAVVQ 76 (222)
Q Consensus 47 GH~FC~~Cl~~wl~~~~~~~~CPvCr~~v~ 76 (222)
|..||..|..+.. ..+|..|...|.
T Consensus 106 g~~yC~~~y~~~f-----~~kC~~C~~~I~ 130 (182)
T 2jtn_A 106 ESVYCKDDFFKRF-----GTKCAACQLGIP 130 (182)
T ss_dssp TEEECHHHHHHTT-----SCCCTTTCCCCC
T ss_pred CEeeecCcccccc-----ccccccCCCccC
Confidence 4445655554321 246777766554
No 115
>2xjy_A Rhombotin-2; oncoprotein, T-cell leukemia, proto-oncogene, transcription, developmental protein; 2.40A {Homo sapiens} PDB: 2xjz_A
Probab=50.93 E-value=13 Score=27.19 Aligned_cols=48 Identities=15% Similarity=0.377 Sum_probs=36.1
Q ss_pred CCccccccccCCCC---cEEcccCCccCHhHHHHHHHhcCCCCCCCcccccccc
Q 027545 27 GGFECNICFELAQD---PIVTLCGHLFCWPCLYRWLHHHSHSQECPVCKAVVQE 77 (222)
Q Consensus 27 ~~~~C~ICl~~~~~---pv~l~CGH~FC~~Cl~~wl~~~~~~~~CPvCr~~v~~ 77 (222)
+-+.|..|...+.+ .....=|..||..|..+... ....|..|...|..
T Consensus 28 ~CF~C~~C~~~L~~~~~~~~~~~g~~yC~~~y~~~~~---~~~~C~~C~~~I~~ 78 (131)
T 2xjy_A 28 DCLSCDLCGCRLGEVGRRLYYKLGRKLCRRDYLRLFG---QDGLCASCDKRIRA 78 (131)
T ss_dssp TTCBCTTTCCBCSSTTCCEEEETTEEECHHHHHHHHC---CCEECTTTCCEECT
T ss_pred HHcccCcCCCccccCCCeEEEECCEEeecCchhhhCC---CccChhhcCCccCc
Confidence 56889999888853 45567788999999887554 22379999998874
No 116
>2xqn_T Testin, TESS; metal-binding protein, cytoskeleton, focal adhesion, acrosom; 2.62A {Homo sapiens}
Probab=50.28 E-value=8.9 Score=28.03 Aligned_cols=46 Identities=20% Similarity=0.430 Sum_probs=34.9
Q ss_pred CCccccccccCCCCc-EEcccCCccCHhHHHHHHHhcCCCCCCCcccccccc
Q 027545 27 GGFECNICFELAQDP-IVTLCGHLFCWPCLYRWLHHHSHSQECPVCKAVVQE 77 (222)
Q Consensus 27 ~~~~C~ICl~~~~~p-v~l~CGH~FC~~Cl~~wl~~~~~~~~CPvCr~~v~~ 77 (222)
+-+.|..|...+... ....=|..||..|..+.. ...|..|.+.|..
T Consensus 29 ~CF~C~~C~~~L~~~~f~~~~g~~yC~~cy~~~~-----~~~C~~C~~~I~~ 75 (126)
T 2xqn_T 29 KHFCCFDCDSILAGEIYVMVNDKPVCKPCYVKNH-----AVVCQGCHNAIDP 75 (126)
T ss_dssp GGSBCTTTCCBCTTSEEEEETTEEEEHHHHHHHS-----CCBCTTTCSBCCT
T ss_pred CCCCcCCCCCCCCcCEEEeECCEEechHHhCcCc-----CccCcccCCcCCc
Confidence 457889998887653 445778899999986532 3589999998884
No 117
>2e6r_A Jumonji/ARID domain-containing protein 1D; PHD domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=50.27 E-value=1.5 Score=31.49 Aligned_cols=52 Identities=21% Similarity=0.399 Sum_probs=32.7
Q ss_pred CCCCCCccccccccCCCC-cEEc--ccCCccCHhHHHHHHHhc-CCCCCCCccccc
Q 027545 23 ANDAGGFECNICFELAQD-PIVT--LCGHLFCWPCLYRWLHHH-SHSQECPVCKAV 74 (222)
Q Consensus 23 ~~~~~~~~C~ICl~~~~~-pv~l--~CGH~FC~~Cl~~wl~~~-~~~~~CPvCr~~ 74 (222)
....+...|.||.+.-.. .+++ .|...||..|+..-+..- ...-.||.|+..
T Consensus 11 ~~~~~~~~C~vC~~~~~~~~ll~CD~C~~~~H~~Cl~Ppl~~~P~g~W~C~~C~~~ 66 (92)
T 2e6r_A 11 AQFIDSYICQVCSRGDEDDKLLFCDGCDDNYHIFCLLPPLPEIPRGIWRCPKCILA 66 (92)
T ss_dssp CCCCCCCCCSSSCCSGGGGGCEECTTTCCEECSSSSSSCCSSCCSSCCCCHHHHHH
T ss_pred hhccCCCCCccCCCcCCCCCEEEcCCCCchhccccCCCCcccCCCCCcCCccCcCc
Confidence 344456679999875432 2332 688889999986433311 235679999764
No 118
>2l4z_A DNA endonuclease RBBP8, LIM domain transcription LMO4; protein-protein interaction, LIM-interaction DOM LMO4, RBBP8/CTIP, LIM-only protein; HET: DNA; NMR {Homo sapiens}
Probab=49.43 E-value=13 Score=27.60 Aligned_cols=39 Identities=21% Similarity=0.405 Sum_probs=29.1
Q ss_pred CCccccccccCCCCc-EEcccCCccCHhHHHHHHHhcCCCCCCCccccccc
Q 027545 27 GGFECNICFELAQDP-IVTLCGHLFCWPCLYRWLHHHSHSQECPVCKAVVQ 76 (222)
Q Consensus 27 ~~~~C~ICl~~~~~p-v~l~CGH~FC~~Cl~~wl~~~~~~~~CPvCr~~v~ 76 (222)
....|.-|...+.+. ++..-+..||..|+ +|-.|+..+.
T Consensus 60 ~~~~C~~C~~~I~~~~~v~a~~~~wH~~CF-----------~C~~C~~~L~ 99 (123)
T 2l4z_A 60 SWKRCAGCGGKIADRFLLYAMDSYWHSRCL-----------KCSSCQAQLG 99 (123)
T ss_dssp SCSBBSSSSSBCCSSSEEEETTEEEETTTS-----------BCTTTCCBGG
T ss_pred cCCcCcCCCCCcCCcEEEEeCCcEEccccc-----------CcCcCCCccc
Confidence 456799999988776 45667777776664 6888988875
No 119
>3ql9_A Transcriptional regulator ATRX; zinc finger, transcription, lysine trimethylation, protein, histone-binding protein, transcription-structural complex; HET: M3L; 0.93A {Homo sapiens} PDB: 3qla_A* 3qlc_A 3qln_A 2jm1_A
Probab=48.98 E-value=16 Score=27.79 Aligned_cols=50 Identities=24% Similarity=0.495 Sum_probs=32.0
Q ss_pred CCCCccccccccCCCCcEEcccCCccCHhHHHHH-----H-Hh--cCCCCCCCccccc
Q 027545 25 DAGGFECNICFELAQDPIVTLCGHLFCWPCLYRW-----L-HH--HSHSQECPVCKAV 74 (222)
Q Consensus 25 ~~~~~~C~ICl~~~~~pv~l~CGH~FC~~Cl~~w-----l-~~--~~~~~~CPvCr~~ 74 (222)
+..+..|.||.+--+-..--.|-..||..||..- + +. ....-.|+.|+..
T Consensus 54 Dg~~~~C~vC~dGG~LlcCd~Cpr~Fc~~Cl~~~lg~~~l~~i~~~~~~W~C~~C~~~ 111 (129)
T 3ql9_A 54 DGMDEQCRWCAEGGNLICCDFCHNAFCKKCILRNLGRRELSTIMDENNQWYCYICHPE 111 (129)
T ss_dssp TSCBSSCTTTCCCSEEEECSSSSCEEEHHHHHHHTCHHHHHHHTCTTSCCCCTTTCCG
T ss_pred CCCCCcCeecCCCCeeEecCCCchhhhHHHhCCCcchhHHHHhccCCCCeEcCCcCCH
Confidence 3345569999864221111268889999999864 2 22 2457899999653
No 120
>2d8y_A Eplin protein; LIM domain, epithelial protein LOST in neoplasm, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=48.86 E-value=21 Score=24.49 Aligned_cols=40 Identities=15% Similarity=0.365 Sum_probs=27.2
Q ss_pred CCccccccccCCCC-cEEcccCCccCHhHHHHHHHhcCCCCCCCcccccccc
Q 027545 27 GGFECNICFELAQD-PIVTLCGHLFCWPCLYRWLHHHSHSQECPVCKAVVQE 77 (222)
Q Consensus 27 ~~~~C~ICl~~~~~-pv~l~CGH~FC~~Cl~~wl~~~~~~~~CPvCr~~v~~ 77 (222)
....|.-|.+.+.+ ..+..-+..||..|+ .|-.|+..+..
T Consensus 14 ~~~~C~~C~~~I~~~~~v~a~~~~~H~~CF-----------~C~~C~~~L~~ 54 (91)
T 2d8y_A 14 ARETCVECQKTVYPMERLLANQQVFHISCF-----------RCSYCNNKLSL 54 (91)
T ss_dssp SSCBCTTTCCBCCTTSEEECSSSEEETTTC-----------BCTTTCCBCCT
T ss_pred CCCcCccCCCccCCceeEEECCCEECCCCC-----------eeCCCCCCCCC
Confidence 45679999888764 345566766766664 57778777664
No 121
>2yql_A PHD finger protein 21A; PHD domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=48.26 E-value=2.1 Score=27.56 Aligned_cols=46 Identities=20% Similarity=0.460 Sum_probs=28.4
Q ss_pred CCCccccccccCCCCcEE--cccCCccCHhHHHHHHHhc-CCCCCCCcccc
Q 027545 26 AGGFECNICFELAQDPIV--TLCGHLFCWPCLYRWLHHH-SHSQECPVCKA 73 (222)
Q Consensus 26 ~~~~~C~ICl~~~~~pv~--l~CGH~FC~~Cl~~wl~~~-~~~~~CPvCr~ 73 (222)
..+..|.||.+. ..++ -.|...||..|+..-+... ...-.||.|+.
T Consensus 7 ~~~~~C~vC~~~--g~ll~Cd~C~~~~H~~Cl~ppl~~~p~g~W~C~~C~~ 55 (56)
T 2yql_A 7 GHEDFCSVCRKS--GQLLMCDTCSRVYHLDCLDPPLKTIPKGMWICPRCQD 55 (56)
T ss_dssp SSCCSCSSSCCS--SCCEECSSSSCEECSSSSSSCCCSCCCSSCCCHHHHC
T ss_pred CCCCCCccCCCC--CeEEEcCCCCcceECccCCCCcCCCCCCceEChhhhC
Confidence 345569999874 2223 2688889999987433321 23456888754
No 122
>2o35_A Hypothetical protein DUF1244; helix bundle, structural genomics, PSI-2, protein structure initiative; HET: MSE; 2.12A {Sinorhizobium meliloti} SCOP: a.293.1.1
Probab=47.95 E-value=7.9 Score=28.36 Aligned_cols=13 Identities=38% Similarity=1.043 Sum_probs=11.5
Q ss_pred ccCHhHHHHHHHh
Q 027545 49 LFCWPCLYRWLHH 61 (222)
Q Consensus 49 ~FC~~Cl~~wl~~ 61 (222)
-||..||.+|...
T Consensus 42 GFCRNCLskWy~~ 54 (105)
T 2o35_A 42 GFCRNCLSNWYRE 54 (105)
T ss_dssp SCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 3999999999985
No 123
>3fyb_A Protein of unknown function (DUF1244); hydrocar degrading, structural genomics, PSI-2; HET: PEG; 1.80A {Alcanivorax borkumensis SK2}
Probab=47.92 E-value=7.9 Score=28.31 Aligned_cols=13 Identities=46% Similarity=1.160 Sum_probs=11.5
Q ss_pred ccCHhHHHHHHHh
Q 027545 49 LFCWPCLYRWLHH 61 (222)
Q Consensus 49 ~FC~~Cl~~wl~~ 61 (222)
-||..||.+|...
T Consensus 41 GFCRNCLskWy~~ 53 (104)
T 3fyb_A 41 DFCRNCLAKWLME 53 (104)
T ss_dssp SCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 3999999999984
No 124
>3mpx_A FYVE, rhogef and PH domain-containing protein 5; structural genomics consortium, DH domain, SGC, L binding protein; 2.80A {Homo sapiens}
Probab=47.33 E-value=4 Score=36.34 Aligned_cols=49 Identities=16% Similarity=0.265 Sum_probs=0.0
Q ss_pred CCccccccccCCCCc----EEcccCCccCHhHHHHHHHh----cCCCCCCCcccccc
Q 027545 27 GGFECNICFELAQDP----IVTLCGHLFCWPCLYRWLHH----HSHSQECPVCKAVV 75 (222)
Q Consensus 27 ~~~~C~ICl~~~~~p----v~l~CGH~FC~~Cl~~wl~~----~~~~~~CPvCr~~v 75 (222)
....|.+|...+.-- .-..||++||..|....+.. ......|-.|-..+
T Consensus 374 ~~~~c~~c~~~f~~~~r~h~Cr~Cg~~~C~~Cs~~~~~~~~~~~~~~rvC~~C~~~l 430 (434)
T 3mpx_A 374 HVMMCMNCGCDFSLTLRRHHCHACGKIVCRNCSRNKYPLKYLKDRMAKVCDGCFGEL 430 (434)
T ss_dssp ---------------------------------------------------------
T ss_pred cCCcCCCcCCCCCCcchhhhcccCcCEeehhhCCCeeeCCCCCCCcCEecHHHHHHH
Confidence 346799998766422 12489999999998754421 11235676665544
No 125
>2cor_A Pinch protein; LIM domain, particularly interesting NEW Cys- His protein, LIM and senescent cell antigen-like domains 1, structural genomics; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=47.11 E-value=17 Score=24.36 Aligned_cols=42 Identities=12% Similarity=0.412 Sum_probs=30.4
Q ss_pred CCCccccccccCCCCcEEcccCCccCHhHHHHHHHhcCCCCCCCccccccccc
Q 027545 26 AGGFECNICFELAQDPIVTLCGHLFCWPCLYRWLHHHSHSQECPVCKAVVQEE 78 (222)
Q Consensus 26 ~~~~~C~ICl~~~~~pv~l~CGH~FC~~Cl~~wl~~~~~~~~CPvCr~~v~~~ 78 (222)
.....|.-|.+.+.+.++..-|..||..|+ .|-.|+..+...
T Consensus 13 ~~~~~C~~C~~~I~~~~v~a~~~~~H~~CF-----------~C~~C~~~L~~~ 54 (79)
T 2cor_A 13 LGKYICQKCHAIIDEQPLIFKNDPYHPDHF-----------NCANCGKELTAD 54 (79)
T ss_dssp CCCCBCTTTCCBCCSCCCCCSSSCCCTTTS-----------BCSSSCCBCCTT
T ss_pred cCCCCCccCCCEecceEEEECcceeCCCCC-----------EeCCCCCccCCC
Confidence 345679999888877666667777776663 688888887744
No 126
>3mjh_B Early endosome antigen 1; protein-zinc finger complex, beta BETA alpha fold, beta HAIR RAB5A GTPase, EEA1, protein transport; HET: GTP; 2.03A {Homo sapiens}
Probab=46.74 E-value=3.7 Score=24.18 Aligned_cols=14 Identities=29% Similarity=0.724 Sum_probs=8.5
Q ss_pred CccccccccCCCCc
Q 027545 28 GFECNICFELAQDP 41 (222)
Q Consensus 28 ~~~C~ICl~~~~~p 41 (222)
-+.||||+..+..+
T Consensus 5 GFiCP~C~~~l~s~ 18 (34)
T 3mjh_B 5 GFICPQCMKSLGSA 18 (34)
T ss_dssp EEECTTTCCEESSH
T ss_pred ccCCcHHHHHcCCH
Confidence 36677776655544
No 127
>1vfy_A Phosphatidylinositol-3-phosphate binding FYVE domain of protein VPS27; endosome maturation, intracellular trafficking; 1.15A {Saccharomyces cerevisiae} SCOP: g.50.1.1
Probab=46.25 E-value=8.7 Score=25.94 Aligned_cols=28 Identities=25% Similarity=0.354 Sum_probs=20.4
Q ss_pred ccccccccCCCCcE---E-cccCCccCHhHHH
Q 027545 29 FECNICFELAQDPI---V-TLCGHLFCWPCLY 56 (222)
Q Consensus 29 ~~C~ICl~~~~~pv---~-l~CGH~FC~~Cl~ 56 (222)
..|.+|...+.--. - -.||.+||..|..
T Consensus 12 ~~C~~C~~~F~~~~RrHHCR~CG~v~C~~Cs~ 43 (73)
T 1vfy_A 12 DACMICSKKFSLLNRKHHCRSCGGVFCQEHSS 43 (73)
T ss_dssp SBCTTTCCBCBTTBCCEECTTTCCEECGGGSC
T ss_pred CcccCCCCccCCccccccCCCCCEEEcccccC
Confidence 37999987664321 1 4899999999974
No 128
>3t7l_A Zinc finger FYVE domain-containing protein 16; structural genomics consortium, SGC, lipid BIND protein, transport protein; 1.09A {Homo sapiens}
Probab=45.76 E-value=6.6 Score=27.76 Aligned_cols=50 Identities=22% Similarity=0.443 Sum_probs=29.8
Q ss_pred CCccccccccCCCCc----EEcccCCccCHhHHHHHHHhc---CCCCCCCccccccc
Q 027545 27 GGFECNICFELAQDP----IVTLCGHLFCWPCLYRWLHHH---SHSQECPVCKAVVQ 76 (222)
Q Consensus 27 ~~~~C~ICl~~~~~p----v~l~CGH~FC~~Cl~~wl~~~---~~~~~CPvCr~~v~ 76 (222)
+...|.+|...+.-- .-..||++||..|........ .....|-.|-..+.
T Consensus 19 ~~~~C~~C~~~F~~~~RrhhCr~CG~v~C~~Cs~~~~~l~~~~~~~RVC~~C~~~l~ 75 (90)
T 3t7l_A 19 EAPNCMNCQVKFTFTKRRHHCRACGKVFCGVCCNRKCKLQYLEKEARVCVVCYETIS 75 (90)
T ss_dssp GCCBCTTTCCBCCSSSCCEECTTTCCEECGGGSCEEEEETTTTEEEEECHHHHHHHH
T ss_pred cCCcCcCCCCcccchhhCccccCCCCEECCcccCCeeecCCCCCCCeECHHHHHHHH
Confidence 445699998766421 124899999999986432110 12345666655443
No 129
>1y02_A CARP2, FYVE-ring finger protein sakura; zinc-binding module, phosphoinositide binding, caspase regulation, metal binding protein; 1.80A {Homo sapiens} SCOP: a.140.2.1 g.50.1.1
Probab=44.89 E-value=6.3 Score=29.69 Aligned_cols=45 Identities=18% Similarity=0.372 Sum_probs=27.6
Q ss_pred CCccccccccCCCCc----EEcccCCccCHhHHHHHHHhcCCCCCCCccccc
Q 027545 27 GGFECNICFELAQDP----IVTLCGHLFCWPCLYRWLHHHSHSQECPVCKAV 74 (222)
Q Consensus 27 ~~~~C~ICl~~~~~p----v~l~CGH~FC~~Cl~~wl~~~~~~~~CPvCr~~ 74 (222)
....|..|...+.-- .--.||.+||..|...... ....|-.|-..
T Consensus 18 ~~~~C~~C~~~Fs~~~RkHHCR~CG~ifC~~Cs~~~~~---~vRVC~~C~~~ 66 (120)
T 1y02_A 18 LEPSCKSCGAHFANTARKQTCLDCKKNFCMTCSSQVGN---GPRLCLLCQRF 66 (120)
T ss_dssp --CCCTTTCCCCSSGGGCEECTTTCCEECGGGEEC-------CCEEHHHHHH
T ss_pred ccCcccCcCCccccccccccCCCCCCeeCHHHhCCCCC---CceECHHHHHH
Confidence 445799998876432 1248999999999765443 24567777543
No 130
>1wjp_A Zinc finger protein 295; ZF-C2H2 domain, zinc binding, nucleic acid binding, KIAA1227 protein, structural genomics; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 g.37.1.1
Probab=44.82 E-value=28 Score=23.78 Aligned_cols=17 Identities=12% Similarity=0.444 Sum_probs=12.6
Q ss_pred CCCCccccccccCCCCc
Q 027545 25 DAGGFECNICFELAQDP 41 (222)
Q Consensus 25 ~~~~~~C~ICl~~~~~p 41 (222)
....+.|.+|-..+...
T Consensus 13 ~~~~~~C~~C~~~f~~~ 29 (107)
T 1wjp_A 13 NKEVYQCRLCNAKLSSL 29 (107)
T ss_dssp CCCCCBCTTTCCBCSSH
T ss_pred CCcCeECCCCCCccCCH
Confidence 34568999998877654
No 131
>1rut_X Flinc4, fusion protein of LMO4 protein and LIM domain- binding protein 1; B-tandem zipper, protein binding; 1.30A {Mus musculus} SCOP: g.39.1.3 g.39.1.3 g.39.1.3 g.39.1.3 PDB: 2dfy_X 2xjz_I 2xjy_B
Probab=44.42 E-value=7.4 Score=30.83 Aligned_cols=48 Identities=21% Similarity=0.452 Sum_probs=35.1
Q ss_pred CCccccccccCCCC---cEEcccCCccCHhHHHHHHHhcCCCCCCCcccccccc
Q 027545 27 GGFECNICFELAQD---PIVTLCGHLFCWPCLYRWLHHHSHSQECPVCKAVVQE 77 (222)
Q Consensus 27 ~~~~C~ICl~~~~~---pv~l~CGH~FC~~Cl~~wl~~~~~~~~CPvCr~~v~~ 77 (222)
+.|.|..|...+.+ .....=|..||..|..+... ....|..|.+.|..
T Consensus 31 ~CF~C~~C~~~L~~~g~~~~~~~g~~yC~~cy~~~~~---~~~~C~~C~~~I~~ 81 (188)
T 1rut_X 31 RCLKCSSCQAQLGDIGTSSYTKSGMILCRNDYIRLFG---NSGACSACGQSIPA 81 (188)
T ss_dssp GGCBCTTTCCBHHHHCSEEEEETTEEECHHHHHHHHS---CCEECTTTCCEECT
T ss_pred cCcccCCCCcccccCCceEEEeCCccccccccccccc---cCCccccCCCcccc
Confidence 45778888887764 45566788999999877554 11269999998874
No 132
>2dj7_A Actin-binding LIM protein 3; LIM domain, Zn binding protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=42.86 E-value=18 Score=24.37 Aligned_cols=40 Identities=18% Similarity=0.468 Sum_probs=26.2
Q ss_pred CCCccccccccCCC-CcEEcccCCccCHhHHHHHHHhcCCCCCCCccccccc
Q 027545 26 AGGFECNICFELAQ-DPIVTLCGHLFCWPCLYRWLHHHSHSQECPVCKAVVQ 76 (222)
Q Consensus 26 ~~~~~C~ICl~~~~-~pv~l~CGH~FC~~Cl~~wl~~~~~~~~CPvCr~~v~ 76 (222)
.....|.-|.+.+. ...+..-+..||..|+ +|-.|+..+.
T Consensus 13 ~~~~~C~~C~~~I~~~~~v~a~~~~wH~~CF-----------~C~~C~~~L~ 53 (80)
T 2dj7_A 13 RGPSHCAGCKEEIKHGQSLLALDKQWHVSCF-----------KCQTCSVILT 53 (80)
T ss_dssp SSCSCCTTTCCCCSSSCCEEETTEEECTTTC-----------BCSSSCCBCS
T ss_pred CCCCCCcCcCCeeCCCeEEEECCcccccccC-----------CcCcCCCCcC
Confidence 34567999988775 3344455666666653 5888887775
No 133
>2eps_A POZ-, at HOOK-, and zinc finger-containing protein 1; C2H2, zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1
Probab=42.51 E-value=52 Score=19.48 Aligned_cols=40 Identities=18% Similarity=0.309 Sum_probs=25.4
Q ss_pred CCCccccccccCCCCcEEcccCCccCHhHHHHHHH-hc--CCCCCCCccccccc
Q 027545 26 AGGFECNICFELAQDPIVTLCGHLFCWPCLYRWLH-HH--SHSQECPVCKAVVQ 76 (222)
Q Consensus 26 ~~~~~C~ICl~~~~~pv~l~CGH~FC~~Cl~~wl~-~~--~~~~~CPvCr~~v~ 76 (222)
...+.|.+|-..+... .-|...++ .+ .....|++|.+.+.
T Consensus 10 ~k~~~C~~C~k~f~~~-----------~~L~~H~~~~H~~~k~~~C~~C~k~F~ 52 (54)
T 2eps_A 10 GKPYICQSCGKGFSRP-----------DHLNGHIKQVHTSERPHKCQVWVSGPS 52 (54)
T ss_dssp SCCEECSSSCCEESSH-----------HHHHHHHHHTSCCCCCCCSSSSCCSSC
T ss_pred CCCeECCCCCcccCCH-----------HHHHHHHHHhcCCCCCccCCCCCCCCC
Confidence 3568899887665542 34555543 33 23578999988765
No 134
>1fp0_A KAP-1 corepressor; PHD domain, C3HC4 type zinc binding domain, -structure, transcription; NMR {Homo sapiens} SCOP: g.50.1.2
Probab=40.84 E-value=17 Score=25.76 Aligned_cols=52 Identities=19% Similarity=0.457 Sum_probs=33.8
Q ss_pred CCCCCCCCccccccccCCCCcEE--cccCCccCHhHHHHHHHhc-CCCCCCCccccc
Q 027545 21 NSANDAGGFECNICFELAQDPIV--TLCGHLFCWPCLYRWLHHH-SHSQECPVCKAV 74 (222)
Q Consensus 21 ~~~~~~~~~~C~ICl~~~~~pv~--l~CGH~FC~~Cl~~wl~~~-~~~~~CPvCr~~ 74 (222)
+...+..+..|.+|.+.- ..+ -.|--.|+..|+..-+..- .....||.|+..
T Consensus 18 ~~~~d~n~~~C~vC~~~g--~LL~CD~C~~~fH~~Cl~PpL~~~P~g~W~C~~C~~~ 72 (88)
T 1fp0_A 18 FGTLDDSATICRVCQKPG--DLVMCNQCEFCFHLDCHLPALQDVPGEEWSCSLCHVL 72 (88)
T ss_dssp CCSSSSSSSCCSSSCSSS--CCEECTTSSCEECTTSSSTTCCCCCSSSCCCCSCCCC
T ss_pred ccccCCCCCcCcCcCCCC--CEEECCCCCCceecccCCCCCCCCcCCCcCCccccCC
Confidence 344455667899999753 222 2677789999996544421 245789999754
No 135
>1x6e_A Zinc finger protein 24; ZNF24, KOX17, ZNF191, zscan3, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1
Probab=40.80 E-value=37 Score=21.36 Aligned_cols=43 Identities=14% Similarity=0.308 Sum_probs=26.8
Q ss_pred CCCCCccccccccCCCCcEEcccCCccCHhHHHHHHHhc--CCCCCCCcccccccc
Q 027545 24 NDAGGFECNICFELAQDPIVTLCGHLFCWPCLYRWLHHH--SHSQECPVCKAVVQE 77 (222)
Q Consensus 24 ~~~~~~~C~ICl~~~~~pv~l~CGH~FC~~Cl~~wl~~~--~~~~~CPvCr~~v~~ 77 (222)
..+..+.|.+|-..+... .-|...++.+ .....|++|.+.+..
T Consensus 10 ~~~k~~~C~~C~k~f~~~-----------~~L~~H~~~h~~~~~~~C~~C~~~f~~ 54 (72)
T 1x6e_A 10 SGEKPYGCVECGKAFSRS-----------SILVQHQRVHTGEKPYKCLECGKAFSQ 54 (72)
T ss_dssp TTCCCEECSSSCCEESSH-----------HHHHHHHHGGGCSCCEECSSSCCEESS
T ss_pred CCCCCccCCCCCCccCCH-----------HHHHHHHHhcCCCCCeECCCCCcccCC
Confidence 344678999987766543 2333444332 235789999887764
No 136
>1x4w_A Hypothetical protein FLJ13222; ZF-AN1 domain, zinc binding, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=39.78 E-value=15 Score=24.87 Aligned_cols=29 Identities=21% Similarity=0.343 Sum_probs=20.0
Q ss_pred CCCCccccccccCCCCc----EEcccCCccCHh
Q 027545 25 DAGGFECNICFELAQDP----IVTLCGHLFCWP 53 (222)
Q Consensus 25 ~~~~~~C~ICl~~~~~p----v~l~CGH~FC~~ 53 (222)
......|..|.....-+ ..=.||..||..
T Consensus 12 ~~~~~rC~~C~kk~gL~~~egf~CrCg~~FC~~ 44 (67)
T 1x4w_A 12 QKSRRRCFQCQTKLELVQQELGSCRCGYVFCML 44 (67)
T ss_dssp CSCTTBCSSSCCBCCHHHHHHHCCSSSCCCCTT
T ss_pred CccCCcchhhCCeecccccCceEecCCCEehhc
Confidence 33456899998766543 233799999974
No 137
>2ee8_A Protein ODD-skipped-related 2; zinc binding, ZF-C2H2 domain, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: k.12.1.1
Probab=39.71 E-value=79 Score=21.13 Aligned_cols=18 Identities=17% Similarity=0.362 Sum_probs=12.8
Q ss_pred CCCCCccccccccCCCCc
Q 027545 24 NDAGGFECNICFELAQDP 41 (222)
Q Consensus 24 ~~~~~~~C~ICl~~~~~p 41 (222)
.....+.|.+|-..+...
T Consensus 13 ~~~~~~~C~~C~~~f~~~ 30 (106)
T 2ee8_A 13 KTKKEFICKFCGRHFTKS 30 (106)
T ss_dssp CCCCCCBCSSSCCBCSSH
T ss_pred CCCcCeECCCCCCccCCH
Confidence 345668999998776543
No 138
>1f62_A Transcription factor WSTF; Zn-finger; NMR {Homo sapiens} SCOP: g.50.1.2
Probab=39.66 E-value=8.3 Score=23.94 Aligned_cols=44 Identities=25% Similarity=0.636 Sum_probs=27.4
Q ss_pred cccccccCCCCc-EEc--ccCCccCHhHHHHHHHhc-CCCCCCCcccc
Q 027545 30 ECNICFELAQDP-IVT--LCGHLFCWPCLYRWLHHH-SHSQECPVCKA 73 (222)
Q Consensus 30 ~C~ICl~~~~~p-v~l--~CGH~FC~~Cl~~wl~~~-~~~~~CPvCr~ 73 (222)
.|.||.+.-.+. ++. .|...||..|+..-+... .+.-.||.|+.
T Consensus 2 ~C~vC~~~~~~~~ll~Cd~C~~~~H~~Cl~p~l~~~P~g~W~C~~C~~ 49 (51)
T 1f62_A 2 RCKVCRKKGEDDKLILCDECNKAFHLFCLRPALYEVPDGEWQCPACQP 49 (51)
T ss_dssp CCTTTCCSSCCSCCEECTTTCCEECHHHHCTTCCSCCSSCCSCTTTSC
T ss_pred CCCCCCCCCCCCCEEECCCCChhhCcccCCCCcCCCCCCcEECcCccc
Confidence 477887643322 222 688889999996433321 23567999965
No 139
>1jdm_A Sarcolipin; helix, membrane protein; NMR {Synthetic} SCOP: j.35.1.1
Probab=39.44 E-value=26 Score=19.76 Aligned_cols=18 Identities=17% Similarity=0.381 Sum_probs=11.3
Q ss_pred HHHHHHHHHHHHHHHHHHh
Q 027545 203 VLKNLLLLIGLFVILALLF 221 (222)
Q Consensus 203 ~l~~~~~~~~~~~~~~l~~ 221 (222)
|+| +.+.|.+.+++|||+
T Consensus 9 f~N-Ft~vLI~vlLi~llV 26 (31)
T 1jdm_A 9 FLN-FTIVLITVILMWLLV 26 (31)
T ss_dssp HHH-HHHHHHHHHHHHHHT
T ss_pred HHH-HHHHHHHHHHHHHHH
Confidence 443 455566777788875
No 140
>1we9_A PHD finger family protein; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: g.50.1.2
Probab=39.08 E-value=5.4 Score=26.07 Aligned_cols=50 Identities=22% Similarity=0.428 Sum_probs=30.8
Q ss_pred CCCCccccccccCCCC-c-EE--cccCCccCHhHHHHHHHh--cCCCCCCCccccc
Q 027545 25 DAGGFECNICFELAQD-P-IV--TLCGHLFCWPCLYRWLHH--HSHSQECPVCKAV 74 (222)
Q Consensus 25 ~~~~~~C~ICl~~~~~-p-v~--l~CGH~FC~~Cl~~wl~~--~~~~~~CPvCr~~ 74 (222)
+++...|+||.....+ . .+ -.|..-||..|+.--... ......||.|+..
T Consensus 3 ~~e~~~C~~C~~~~~~~~~mI~Cd~C~~WfH~~Cvgl~~~~~~~~~~~~C~~C~~k 58 (64)
T 1we9_A 3 SGSSGQCGACGESYAADEFWICCDLCEMWFHGKCVKITPARAEHIKQYKCPSCSNK 58 (64)
T ss_dssp CSSCCCCSSSCCCCCSSSCEEECSSSCCEEETTTTTCCTTGGGGCSSCCCHHHHTT
T ss_pred CCCCCCCCCCCCccCCCCCEEEccCCCCCCCccccCcChhHhcCCCcEECCCCcCc
Confidence 3456779999887642 2 22 267777888887532111 1246789999753
No 141
>1dvp_A HRS, hepatocyte growth factor-regulated tyrosine kinase substrate; VHS, FYVE, zinc finger, superhelix, transferase; HET: CIT; 2.00A {Drosophila melanogaster} SCOP: a.118.9.2 g.50.1.1
Probab=38.75 E-value=8.7 Score=31.35 Aligned_cols=29 Identities=28% Similarity=0.537 Sum_probs=21.1
Q ss_pred CccccccccCCCCc----EEcccCCccCHhHHH
Q 027545 28 GFECNICFELAQDP----IVTLCGHLFCWPCLY 56 (222)
Q Consensus 28 ~~~C~ICl~~~~~p----v~l~CGH~FC~~Cl~ 56 (222)
...|.+|...+.-- .--.||++||..|..
T Consensus 161 ~~~C~~C~~~F~~~~rrhhCr~CG~v~C~~Cs~ 193 (220)
T 1dvp_A 161 GRVCHRCRVEFTFTNRKHHCRNCGQVFCGQCTA 193 (220)
T ss_dssp CSBCTTTCCBCCSSSCCEECTTTCCEECSTTSC
T ss_pred CCccCCCCCccCCcccccccCCcCCEEChHHhC
Confidence 46899998776421 114899999999965
No 142
>2d8x_A Protein pinch; LIM domain, pinch protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=37.88 E-value=17 Score=23.46 Aligned_cols=38 Identities=18% Similarity=0.556 Sum_probs=19.6
Q ss_pred ccccccccCCCCcEEcccCCccCHhHHHHHHHhcCCCCCCCcccccccc
Q 027545 29 FECNICFELAQDPIVTLCGHLFCWPCLYRWLHHHSHSQECPVCKAVVQE 77 (222)
Q Consensus 29 ~~C~ICl~~~~~pv~l~CGH~FC~~Cl~~wl~~~~~~~~CPvCr~~v~~ 77 (222)
..|..|.+.+.+.++..-+..||..|+ +|-.|+..+..
T Consensus 6 ~~C~~C~~~I~~~~~~a~~~~~H~~CF-----------~C~~C~~~L~~ 43 (70)
T 2d8x_A 6 SGCHQCGEFIIGRVIKAMNNSWHPECF-----------RCDLCQEVLAD 43 (70)
T ss_dssp SBCSSSCCBCCSCCEEETTEEECTTTS-----------BCSSSCCBCSS
T ss_pred CcCccCCCEecceEEEECcccccccCC-----------EeCCCCCcCCC
Confidence 346666665555444444544554443 45556555543
No 143
>1wfh_A Zinc finger (AN1-like) family protein; ZF-AN1 domain, zinc binding, structural genomics, riken structural genomics/proteomics initiative; NMR {Arabidopsis thaliana} SCOP: g.80.1.1
Probab=37.27 E-value=40 Score=22.50 Aligned_cols=29 Identities=21% Similarity=0.472 Sum_probs=20.6
Q ss_pred CCCCccccccccCCCC-cEEcccCCccCHh
Q 027545 25 DAGGFECNICFELAQD-PIVTLCGHLFCWP 53 (222)
Q Consensus 25 ~~~~~~C~ICl~~~~~-pv~l~CGH~FC~~ 53 (222)
......|..|...+.- +..=.||..||..
T Consensus 12 k~~~~rC~~C~kkvgl~~f~CrCg~~FC~~ 41 (64)
T 1wfh_A 12 PQRPNRCTVCRKRVGLTGFMCRCGTTFCGS 41 (64)
T ss_dssp CSSCCCCTTTCCCCCTTCEECSSSCEECTT
T ss_pred CCcCCcChhhCCccCccCEEeecCCEeccc
Confidence 3455789999876443 4555799999974
No 144
>3u5n_A E3 ubiquitin-protein ligase TRIM33; TRIM33, PHD, bromodomain, TGF-beta, epigenetics, methylation, K9ME3, K14AC, transcription; HET: M3L ALY; 1.95A {Homo sapiens} PDB: 3u5m_A* 3u5o_A* 3u5p_A*
Probab=37.10 E-value=5 Score=32.55 Aligned_cols=48 Identities=19% Similarity=0.407 Sum_probs=31.2
Q ss_pred CCccccccccCCCCcEEc--ccCCccCHhHHHHHHHhc-CCCCCCCccccccc
Q 027545 27 GGFECNICFELAQDPIVT--LCGHLFCWPCLYRWLHHH-SHSQECPVCKAVVQ 76 (222)
Q Consensus 27 ~~~~C~ICl~~~~~pv~l--~CGH~FC~~Cl~~wl~~~-~~~~~CPvCr~~v~ 76 (222)
.+..|.+|.+.- .++. .|...||..|+..-+... .+...||.|+..-.
T Consensus 6 ~~~~C~~C~~~g--~ll~Cd~C~~~~H~~Cl~p~l~~~p~~~W~C~~C~~~~~ 56 (207)
T 3u5n_A 6 NEDWCAVCQNGG--DLLCCEKCPKVFHLTCHVPTLLSFPSGDWICTFCRDIGK 56 (207)
T ss_dssp SCSSBTTTCCCE--EEEECSSSSCEECTTTSSSCCSSCCSSCCCCTTTSCSSS
T ss_pred CCCCCCCCCCCC--ceEEcCCCCCccCCccCCCCCCCCCCCCEEeCceeCccc
Confidence 445599998532 1222 688889999986544421 24578999987543
No 145
>2gmg_A Hypothetical protein PF0610; winged-helix like protein with metal binding site, structura genomics, PSI, protein structure initiative; NMR {Pyrococcus furiosus} SCOP: a.4.5.82
Probab=36.66 E-value=10 Score=28.01 Aligned_cols=27 Identities=26% Similarity=0.567 Sum_probs=17.5
Q ss_pred cEEcccCCccCHhHHHHHHHhcCCCCCCCcccccc
Q 027545 41 PIVTLCGHLFCWPCLYRWLHHHSHSQECPVCKAVV 75 (222)
Q Consensus 41 pv~l~CGH~FC~~Cl~~wl~~~~~~~~CPvCr~~v 75 (222)
+.-..||+.|+ ..-.....||.|+..-
T Consensus 68 ~~C~~CG~~F~--------~~~~kPsrCP~CkSe~ 94 (105)
T 2gmg_A 68 AQCRKCGFVFK--------AEINIPSRCPKCKSEW 94 (105)
T ss_dssp CBBTTTCCBCC--------CCSSCCSSCSSSCCCC
T ss_pred cChhhCcCeec--------ccCCCCCCCcCCCCCc
Confidence 34457999992 1112457999998753
No 146
>1x61_A Thyroid receptor interacting protein 6; LIM domain, OPA-interacting protein 1, zyxin related protein 1 (ZRP-1), structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=36.58 E-value=42 Score=21.58 Aligned_cols=34 Identities=21% Similarity=0.467 Sum_probs=22.0
Q ss_pred CCccccccccCCCCc-EEcccCCccCHhHHHHHHH
Q 027545 27 GGFECNICFELAQDP-IVTLCGHLFCWPCLYRWLH 60 (222)
Q Consensus 27 ~~~~C~ICl~~~~~p-v~l~CGH~FC~~Cl~~wl~ 60 (222)
+-+.|..|...+... ....=|.+||..|..+.+.
T Consensus 32 ~CF~C~~C~~~L~~~~~~~~~~~~yC~~cy~~~~~ 66 (72)
T 1x61_A 32 GCFVCSTCRAQLRGQHFYAVERRAYCEGCYVATLE 66 (72)
T ss_dssp TTCBCSSSCCBCTTSCEEESSSCEEEHHHHHHHHH
T ss_pred cCCcccccCCcCCcCcCEeeCCeEECHHHHHHHHc
Confidence 446677777766443 3445577788888776665
No 147
>1z60_A TFIIH basal transcription factor complex P44 subunit; basic transcription factor, zinc binding protein, ring finger; NMR {Homo sapiens} SCOP: g.49.1.2
Probab=36.16 E-value=21 Score=23.43 Aligned_cols=40 Identities=30% Similarity=0.713 Sum_probs=28.4
Q ss_pred ccccccccCCCCcEE---cccCCccCHhHHHHHHHhcCCCCCCCcc
Q 027545 29 FECNICFELAQDPIV---TLCGHLFCWPCLYRWLHHHSHSQECPVC 71 (222)
Q Consensus 29 ~~C~ICl~~~~~pv~---l~CGH~FC~~Cl~~wl~~~~~~~~CPvC 71 (222)
..|--|...+.+... ..|++.||..|=. +++ ..-..||-|
T Consensus 16 ~~C~~C~~~~~~~~~y~C~~C~~~FC~dCD~-fiH--e~Lh~CPgC 58 (59)
T 1z60_A 16 RFCYGCQGELKDQHVYVCAVCQNVFCVDCDV-FVH--DSLHSCPGC 58 (59)
T ss_dssp CEETTTTEECTTSEEECCTTTTCCBCHHHHH-TTT--TTSCSSSTT
T ss_pred CcccccCcccCCCccEECCccCcCcccchhH-HHH--hhccCCcCC
Confidence 348888888766543 4899999999953 333 245689988
No 148
>2cup_A Skeletal muscle LIM-protein 1; four and half LIM domains protein 1, LIM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3 g.39.1.3
Probab=35.35 E-value=16 Score=25.42 Aligned_cols=46 Identities=22% Similarity=0.490 Sum_probs=33.2
Q ss_pred CCccccccccCCCCc-EEcccCCccCHhHHHHHHHhcCCCCCCCcccccccc
Q 027545 27 GGFECNICFELAQDP-IVTLCGHLFCWPCLYRWLHHHSHSQECPVCKAVVQE 77 (222)
Q Consensus 27 ~~~~C~ICl~~~~~p-v~l~CGH~FC~~Cl~~wl~~~~~~~~CPvCr~~v~~ 77 (222)
+-+.|..|...+.+. ....=|.+||..|..+. -..+|..|.+.|..
T Consensus 32 ~CF~C~~C~~~L~~~~~~~~~g~~yC~~cy~~~-----~~~~C~~C~~~I~~ 78 (101)
T 2cup_A 32 TCFRCAKCLHPLANETFVAKDNKILCNKCTTRE-----DSPKCKGCFKAIVA 78 (101)
T ss_dssp TTCCCSSSCCCTTSSCCEEETTEEECHHHHTTC-----CCCBCSSSCCBCCS
T ss_pred cCCcccccCCCCCcCeeECcCCEEEChhHhhhh-----cCCccccCCCcccc
Confidence 457788898877654 34566888999987432 24689999998873
No 149
>3zyq_A Hepatocyte growth factor-regulated tyrosine kinas substrate; signaling; 1.48A {Homo sapiens} PDB: 4avx_A*
Probab=35.19 E-value=12 Score=30.74 Aligned_cols=30 Identities=27% Similarity=0.548 Sum_probs=21.7
Q ss_pred CccccccccCCCCc----EEcccCCccCHhHHHH
Q 027545 28 GFECNICFELAQDP----IVTLCGHLFCWPCLYR 57 (222)
Q Consensus 28 ~~~C~ICl~~~~~p----v~l~CGH~FC~~Cl~~ 57 (222)
...|.+|...+.-- .-..||++||..|...
T Consensus 164 ~~~C~~C~~~F~~~~RrhHCR~CG~v~C~~Cs~~ 197 (226)
T 3zyq_A 164 AEECHRCRVQFGVMTRKHHCRACGQIFCGKCSSK 197 (226)
T ss_dssp CSBCTTTCCBCBTTBCCEECTTTCCEECTTTCCE
T ss_pred CCCCcCcCCCCCccccccccCCCcCEeChhhcCC
Confidence 35799998766422 2258999999999753
No 150
>2jmo_A Parkin; IBR, E3 ligase, zinc binding domain, RBR; NMR {Homo sapiens}
Probab=35.02 E-value=2.5 Score=29.32 Aligned_cols=14 Identities=36% Similarity=0.928 Sum_probs=12.2
Q ss_pred ccCCccCHhHHHHH
Q 027545 45 LCGHLFCWPCLYRW 58 (222)
Q Consensus 45 ~CGH~FC~~Cl~~w 58 (222)
.||+.||..|...|
T Consensus 55 ~C~~~FC~~C~~~w 68 (80)
T 2jmo_A 55 GCGFAFCRECKEAY 68 (80)
T ss_dssp CCSCCEETTTTEEC
T ss_pred CCCCeeccccCccc
Confidence 69999999998765
No 151
>1wfp_A Zinc finger (AN1-like) family protein; ZF-AN1 domain, zinc binding, structural genomics, riken structural genomics/proteomics initiative; NMR {Arabidopsis thaliana} SCOP: g.80.1.1
Probab=34.78 E-value=72 Score=21.88 Aligned_cols=43 Identities=21% Similarity=0.352 Sum_probs=26.5
Q ss_pred CCCCccccccccCCCC-cEEcccCCccCHhHHHHHHHhcCCCCCCCcccc
Q 027545 25 DAGGFECNICFELAQD-PIVTLCGHLFCWPCLYRWLHHHSHSQECPVCKA 73 (222)
Q Consensus 25 ~~~~~~C~ICl~~~~~-pv~l~CGH~FC~~Cl~~wl~~~~~~~~CPvCr~ 73 (222)
......|..|...+.- +..=.||..||..= .......|+.--+
T Consensus 22 k~~~~RC~~C~kkvgL~~f~CrCg~~FCs~H------Ry~e~H~C~fDyk 65 (74)
T 1wfp_A 22 KSTATRCLSCNKKVGVTGFKCRCGSTFCGTH------RYPESHECQFDFK 65 (74)
T ss_dssp TCCCCBCSSSCCBCTTTCEECTTSCEECTTT------CSTTTSCCCSCTT
T ss_pred cccCccchhhcCcccccceEeccCCEecccc------CCCcCCCCcCchh
Confidence 4456789999865433 45558999999742 1123456765433
No 152
>2pv0_B DNA (cytosine-5)-methyltransferase 3-like; DNMT3L, unmethylated H3K4, de novo DNA methylation, transferase regulator; HET: DNA; 3.30A {Homo sapiens} PDB: 2pvc_B*
Probab=34.56 E-value=35 Score=30.68 Aligned_cols=48 Identities=19% Similarity=0.389 Sum_probs=31.4
Q ss_pred CCccccccccCCCCcEEc--ccCCccCHhHHHHHHHh-------cCCCCCCCccccc
Q 027545 27 GGFECNICFELAQDPIVT--LCGHLFCWPCLYRWLHH-------HSHSQECPVCKAV 74 (222)
Q Consensus 27 ~~~~C~ICl~~~~~pv~l--~CGH~FC~~Cl~~wl~~-------~~~~~~CPvCr~~ 74 (222)
.+..|-+|-+--.--.-- .|...||..||...+-. ....-.|=+|.-.
T Consensus 92 ~~~yCr~C~~Gg~l~~Cdn~~C~r~FC~~Ci~~n~g~~~~~~i~~~d~W~Cf~C~p~ 148 (386)
T 2pv0_B 92 YQSYCSICCSGETLLICGNPDCTRCYCFECVDSLVGPGTSGKVHAMSNWVCYLCLPS 148 (386)
T ss_dssp SBCSCTTTCCCSSCEECCSTTCCCEECHHHHHHHTCTTHHHHHHHCSSCCCTTTSSC
T ss_pred CcccceEcCCCCeEEEeCCCCCCcchHHHHHHHhcChhHHHHhhccCCceEEEcCCc
Confidence 456688887643211112 78899999999987631 1356789999754
No 153
>2cu8_A Cysteine-rich protein 2; CRP2, CRIP2, ESP1 protein, zinc-binding, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=34.53 E-value=26 Score=23.00 Aligned_cols=40 Identities=20% Similarity=0.390 Sum_probs=25.7
Q ss_pred CccccccccCCC-CcEEcccCCccCHhHHHHHHHhcCCCCCCCccccccccc
Q 027545 28 GFECNICFELAQ-DPIVTLCGHLFCWPCLYRWLHHHSHSQECPVCKAVVQEE 78 (222)
Q Consensus 28 ~~~C~ICl~~~~-~pv~l~CGH~FC~~Cl~~wl~~~~~~~~CPvCr~~v~~~ 78 (222)
...|..|.+.+. ...+..-+..||..|+ +|-.|+..+...
T Consensus 9 ~~~C~~C~~~I~~~~~v~a~~~~~H~~CF-----------~C~~C~~~L~~~ 49 (76)
T 2cu8_A 9 ASKCPKCDKTVYFAEKVSSLGKDWHKFCL-----------KCERCSKTLTPG 49 (76)
T ss_dssp CCBCTTTCCBCCTTTEEEETTEEEETTTC-----------BCSSSCCBCCTT
T ss_pred CCCCcCCCCEeECCeEEEECCeEeeCCCC-----------CCCCCCCccCCC
Confidence 356888888776 4455555666665553 577787777643
No 154
>2ysm_A Myeloid/lymphoid or mixed-lineage leukemia protein 3 homolog; PHD domain, histone-lysine N-methyltransferase, H3 lysine-4 specific MLL3; NMR {Homo sapiens}
Probab=34.43 E-value=10 Score=27.45 Aligned_cols=47 Identities=26% Similarity=0.531 Sum_probs=28.8
Q ss_pred CCCccccccccCCCC-cEE--cccCCccCHhHHHHHHHh-cCCCCCCCccc
Q 027545 26 AGGFECNICFELAQD-PIV--TLCGHLFCWPCLYRWLHH-HSHSQECPVCK 72 (222)
Q Consensus 26 ~~~~~C~ICl~~~~~-pv~--l~CGH~FC~~Cl~~wl~~-~~~~~~CPvCr 72 (222)
.++..|.||.+.-.. ..+ ..|+..||..|+...+.. ......||.|+
T Consensus 5 ~~~~~C~~C~~~g~~~~ll~C~~C~~~~H~~Cl~~~~~~~~~~~W~C~~C~ 55 (111)
T 2ysm_A 5 SSGANCAVCDSPGDLLDQFFCTTCGQHYHGMCLDIAVTPLKRAGWQCPECK 55 (111)
T ss_dssp CCCSCBTTTCCCCCTTTSEECSSSCCEECTTTTTCCCCTTTSTTCCCTTTC
T ss_pred CCCCCCcCCCCCCCCcCCeECCCCCCCcChHHhCCccccccccCccCCcCC
Confidence 355679999875432 222 489999999999754431 12345566554
No 155
>1wff_A Riken cDNA 2810002D23 protein; ZF-AN1 domain, zinc binding, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: g.80.1.1
Probab=34.38 E-value=83 Score=22.13 Aligned_cols=29 Identities=21% Similarity=0.344 Sum_probs=21.2
Q ss_pred CCCCccccccccCCCC--cEEcccCCccCHh
Q 027545 25 DAGGFECNICFELAQD--PIVTLCGHLFCWP 53 (222)
Q Consensus 25 ~~~~~~C~ICl~~~~~--pv~l~CGH~FC~~ 53 (222)
......|..|...+.- +..=.||..||..
T Consensus 22 k~~~~rC~~C~kkvgl~~~f~CrCg~~FC~~ 52 (85)
T 1wff_A 22 KKIMKHCFLCGKKTGLATSFECRCGNNFCAS 52 (85)
T ss_dssp CCCCCBCSSSCCBCSSSSCEECTTCCEECTT
T ss_pred cccCccchhhCCeecccCCeEcCCCCEeccc
Confidence 3445789999875543 6666899999975
No 156
>2co8_A NEDD9 interacting protein with calponin homology and LIM domains; zinc finger protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=34.10 E-value=39 Score=22.67 Aligned_cols=42 Identities=26% Similarity=0.553 Sum_probs=27.9
Q ss_pred CCccccccccCCCC-cEEcccCCccCHhHHHHHHHhcCCCCCCCcccccccccc
Q 027545 27 GGFECNICFELAQD-PIVTLCGHLFCWPCLYRWLHHHSHSQECPVCKAVVQEEK 79 (222)
Q Consensus 27 ~~~~C~ICl~~~~~-pv~l~CGH~FC~~Cl~~wl~~~~~~~~CPvCr~~v~~~~ 79 (222)
....|..|.+.+.+ ..+..-+..||..|+ +|-.|+..+....
T Consensus 14 ~~~~C~~C~~~I~~~e~v~a~~~~wH~~CF-----------~C~~C~~~L~~~~ 56 (82)
T 2co8_A 14 AGDLCALCGEHLYVLERLCVNGHFFHRSCF-----------RCHTCEATLWPGG 56 (82)
T ss_dssp SSCBCSSSCCBCCTTTBCCBTTBCCBTTTC-----------BCSSSCCBCCTTS
T ss_pred CCCCCcccCCCcccceEEEECCCeeCCCcC-----------EEcCCCCCcCCCc
Confidence 44679999987743 234455666776664 6888888776443
No 157
>2lce_A B-cell lymphoma 6 protein; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Homo sapiens}
Probab=33.86 E-value=54 Score=20.60 Aligned_cols=42 Identities=17% Similarity=0.351 Sum_probs=26.8
Q ss_pred CCCCccccccccCCCCcEEcccCCccCHhHHHHHHHhcC--CCCCCCcccccccc
Q 027545 25 DAGGFECNICFELAQDPIVTLCGHLFCWPCLYRWLHHHS--HSQECPVCKAVVQE 77 (222)
Q Consensus 25 ~~~~~~C~ICl~~~~~pv~l~CGH~FC~~Cl~~wl~~~~--~~~~CPvCr~~v~~ 77 (222)
....+.|.+|-..+... .-+...++.+. ....|++|.+.+..
T Consensus 14 ~~~~~~C~~C~k~f~~~-----------~~l~~H~~~H~~~~~~~C~~C~k~f~~ 57 (74)
T 2lce_A 14 SDKPYKCDRCQASFRYK-----------GNLASHKTVHTGEKPYRCNICGAQFNR 57 (74)
T ss_dssp CCCSBCCTTSSCCBSCH-----------HHHHHHHHHHCCCCSEECTTTCCEESC
T ss_pred CCCCeECCCCCceeCCH-----------HHHHHHHHHcCCCCCEECCCCCchhCC
Confidence 34568999988776653 23444444332 34689999887764
No 158
>2jmi_A Protein YNG1, ING1 homolog 1; PHD, histone, recognition, yeast, protein binding; NMR {Saccharomyces cerevisiae} PDB: 2jmj_A*
Probab=33.56 E-value=6.4 Score=28.13 Aligned_cols=49 Identities=22% Similarity=0.518 Sum_probs=28.8
Q ss_pred CCCCCCccccccccCCCCcEEc--ccC---CccCHhHHHHHHHh-cCCCCCCCc-cccc
Q 027545 23 ANDAGGFECNICFELAQDPIVT--LCG---HLFCWPCLYRWLHH-HSHSQECPV-CKAV 74 (222)
Q Consensus 23 ~~~~~~~~C~ICl~~~~~pv~l--~CG---H~FC~~Cl~~wl~~-~~~~~~CPv-Cr~~ 74 (222)
...++...| ||.......++. .|. .-||..|+. |.. -.....||. |++.
T Consensus 21 ~~~~~~~yC-iC~~~~~g~MI~CD~c~C~~eWfH~~CVg--l~~~p~~~W~Cp~cC~~~ 76 (90)
T 2jmi_A 21 NNNQEEVYC-FCRNVSYGPMVACDNPACPFEWFHYGCVG--LKQAPKGKWYCSKDCKEI 76 (90)
T ss_dssp ---CCSCCS-TTTCCCSSSEECCCSSSCSCSCEETTTSS--CSSCTTSCCCSSHHHHHH
T ss_pred CCCCCCcEE-EeCCCCCCCEEEecCCCCccccCcCccCC--CCcCCCCCccCChhhcch
Confidence 344566778 998754444443 433 578888885 221 124678999 9753
No 159
>3v43_A Histone acetyltransferase KAT6A; MOZ, PHD finger, transferase-structural protein; 1.47A {Homo sapiens} PDB: 2ln0_A
Probab=32.94 E-value=57 Score=23.52 Aligned_cols=46 Identities=20% Similarity=0.360 Sum_probs=27.1
Q ss_pred CCccccccccCC-------CCcEE--cccCCccCHhHHHH---HH-HhcCCCCCCCccc
Q 027545 27 GGFECNICFELA-------QDPIV--TLCGHLFCWPCLYR---WL-HHHSHSQECPVCK 72 (222)
Q Consensus 27 ~~~~C~ICl~~~-------~~pv~--l~CGH~FC~~Cl~~---wl-~~~~~~~~CPvCr 72 (222)
....|.+|+..- .+..+ ..|+..||..||.. .. ......-.||.|+
T Consensus 4 p~~~C~~C~~~~~~~~~g~~~~Ll~C~~C~~~~H~~Cl~~~~~~~~~~~~~~W~C~~C~ 62 (112)
T 3v43_A 4 PIPICSFCLGTKEQNREKKPEELISCADCGNSGHPSCLKFSPELTVRVKALRWQCIECK 62 (112)
T ss_dssp CCSSBTTTCCCTTCCTTSCCCCCEECTTTCCEECHHHHTCCHHHHHHHHTSCCCCTTTC
T ss_pred cCccccccCCchhhCcCCCchhceEhhhcCCCCCCchhcCCHHHHHHhhccccccccCC
Confidence 345588887642 11233 37999999999942 11 1123456777775
No 160
>1b8t_A Protein (CRP1); LIM domain, muscle differentiation, contractIle; NMR {Gallus gallus} SCOP: g.39.1.3 g.39.1.3 g.39.1.3 g.39.1.3 PDB: 1ibi_A 1qli_A 1cxx_A 1ctl_A 2o13_A
Probab=32.84 E-value=30 Score=27.22 Aligned_cols=34 Identities=15% Similarity=0.424 Sum_probs=25.6
Q ss_pred CCccccccccCCCCc-EEcccCCccCHhHHHHHHH
Q 027545 27 GGFECNICFELAQDP-IVTLCGHLFCWPCLYRWLH 60 (222)
Q Consensus 27 ~~~~C~ICl~~~~~p-v~l~CGH~FC~~Cl~~wl~ 60 (222)
+-+.|..|...+.+. ....=|..||..|..+...
T Consensus 33 ~CF~C~~C~~~L~~~~~~~~~g~~yC~~cy~~~f~ 67 (192)
T 1b8t_A 33 SCFLCMVCKKNLDSTTVAVHGDEIYCKSCYGKKYG 67 (192)
T ss_dssp TTCBCTTTCCBCCSSSEEEETTEEEEHHHHHHHHS
T ss_pred CCCcCcccCCcCCCCeeEecCCEeeChhhhHhhcC
Confidence 568889998877664 3445688899999987654
No 161
>3o36_A Transcription intermediary factor 1-alpha; TRIM24, PHD finger, bromodomain, H4K16 acetylation, breast C transcription-protein binding complex; HET: ALY; 1.70A {Homo sapiens} PDB: 3o33_A* 3o34_A* 3o35_A* 3o37_A
Probab=32.71 E-value=10 Score=30.00 Aligned_cols=47 Identities=19% Similarity=0.461 Sum_probs=30.6
Q ss_pred CccccccccCCCCcEE--cccCCccCHhHHHHHHHhc-CCCCCCCccccccc
Q 027545 28 GFECNICFELAQDPIV--TLCGHLFCWPCLYRWLHHH-SHSQECPVCKAVVQ 76 (222)
Q Consensus 28 ~~~C~ICl~~~~~pv~--l~CGH~FC~~Cl~~wl~~~-~~~~~CPvCr~~v~ 76 (222)
+..|.+|.+.-. .+ -.|.-.||..|+..-+... .+...||.|+..-.
T Consensus 4 ~~~C~~C~~~g~--ll~Cd~C~~~~H~~C~~p~l~~~p~~~W~C~~C~~~~~ 53 (184)
T 3o36_A 4 EDWCAVCQNGGE--LLCCEKCPKVFHLSCHVPTLTNFPSGEWICTFCRDLSK 53 (184)
T ss_dssp CSSCTTTCCCSS--CEECSSSSCEECTTTSSSCCSSCCSSCCCCTTTSCSSS
T ss_pred CCccccCCCCCe--eeecCCCCcccCccccCCCCCCCCCCCEECccccCccc
Confidence 355999985422 22 2688889999986544421 24578999987543
No 162
>1x4l_A Skeletal muscle LIM-protein 3; LIM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=32.11 E-value=36 Score=21.95 Aligned_cols=38 Identities=13% Similarity=0.365 Sum_probs=23.3
Q ss_pred ccccccccCCCC----cEEcccCCccCHhHHHHHHHhcCCCCCCCcccccccc
Q 027545 29 FECNICFELAQD----PIVTLCGHLFCWPCLYRWLHHHSHSQECPVCKAVVQE 77 (222)
Q Consensus 29 ~~C~ICl~~~~~----pv~l~CGH~FC~~Cl~~wl~~~~~~~~CPvCr~~v~~ 77 (222)
..|.-|.+.+.+ .++..-+..||..|+ +|-.|+..+..
T Consensus 6 ~~C~~C~~~I~~~~~~~~~~a~~~~wH~~CF-----------~C~~C~~~L~~ 47 (72)
T 1x4l_A 6 SGCAGCTNPISGLGGTKYISFEERQWHNDCF-----------NCKKCSLSLVG 47 (72)
T ss_dssp CSBTTTTBCCCCSSSCSCEECSSCEECTTTC-----------BCSSSCCBCTT
T ss_pred CCCcCCCccccCCCCcceEEECCcccCcccC-----------EeccCCCcCCC
Confidence 457777776664 445555666666553 57777766653
No 163
>2puy_A PHD finger protein 21A; PHD finger, histone CODE, BRAF-HDAC complex, transcription; 1.43A {Homo sapiens}
Probab=31.51 E-value=4.4 Score=26.30 Aligned_cols=49 Identities=18% Similarity=0.413 Sum_probs=30.8
Q ss_pred CCCccccccccCCCCcEE--cccCCccCHhHHHHHHHhc-CCCCCCCccccccc
Q 027545 26 AGGFECNICFELAQDPIV--TLCGHLFCWPCLYRWLHHH-SHSQECPVCKAVVQ 76 (222)
Q Consensus 26 ~~~~~C~ICl~~~~~pv~--l~CGH~FC~~Cl~~wl~~~-~~~~~CPvCr~~v~ 76 (222)
..+..|.||.+. ..++ -.|...|+..|+..-+... ...-.||.|.....
T Consensus 3 ~~~~~C~vC~~~--g~ll~Cd~C~~~fH~~Cl~ppl~~~p~g~W~C~~C~~~~~ 54 (60)
T 2puy_A 3 IHEDFCSVCRKS--GQLLMCDTCSRVYHLDCLDPPLKTIPKGMWICPRCQDQML 54 (60)
T ss_dssp CCCSSCTTTCCC--SSCEECSSSSCEECGGGSSSCCSSCCCSCCCCHHHHHHHH
T ss_pred CCCCCCcCCCCC--CcEEEcCCCCcCEECCcCCCCcCCCCCCceEChhccChhh
Confidence 345679999874 2223 2788889999987433321 23567998876543
No 164
>1nyp_A Pinch protein; LIM domain, protein recognition, cell adhesion; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3 PDB: 1u5s_B
Probab=31.17 E-value=18 Score=23.03 Aligned_cols=37 Identities=16% Similarity=0.350 Sum_probs=21.1
Q ss_pred ccccccccCCCCcEEcccCCccCHhHHHHHHHhcCCCCCCCccccccc
Q 027545 29 FECNICFELAQDPIVTLCGHLFCWPCLYRWLHHHSHSQECPVCKAVVQ 76 (222)
Q Consensus 29 ~~C~ICl~~~~~pv~l~CGH~FC~~Cl~~wl~~~~~~~~CPvCr~~v~ 76 (222)
..|..|.+.+.+.++..-|..|+..|+ .|-.|+..+.
T Consensus 6 ~~C~~C~~~I~~~~~~a~~~~~H~~CF-----------~C~~C~~~L~ 42 (66)
T 1nyp_A 6 PICGACRRPIEGRVVNAMGKQWHVEHF-----------VCAKCEKPFL 42 (66)
T ss_dssp CEETTTTEECCSCEECCTTSBEETTTC-----------BCTTTCCBCS
T ss_pred CCCcccCCEecceEEEECccccccCcC-----------EECCCCCCCC
Confidence 356666666655555555555555443 4666666554
No 165
>2ffw_A Midline-1; B-BOX, ring finger, zinc-finger, ligase; NMR {Homo sapiens}
Probab=31.16 E-value=39 Score=22.88 Aligned_cols=32 Identities=28% Similarity=0.564 Sum_probs=23.8
Q ss_pred CCCccccccccCC-CCcEE--cccCCccCHhHHHH
Q 027545 26 AGGFECNICFELA-QDPIV--TLCGHLFCWPCLYR 57 (222)
Q Consensus 26 ~~~~~C~ICl~~~-~~pv~--l~CGH~FC~~Cl~~ 57 (222)
..+..|.+|.+.- ..++. +.|.-.||..|+..
T Consensus 28 ~~~v~C~~C~~~~~~~A~ksCl~C~~s~C~~hl~~ 62 (78)
T 2ffw_A 28 AEKVLCQFCDQDPAQDAVKTCVTCEVSYCDECLKA 62 (78)
T ss_dssp SCCCBCSSCCSSSCCBCCEEETTTTEEECHHHHHH
T ss_pred CCCccCCcCCCCCCCCCeeEccCccchhhhhhhHh
Confidence 3467899998654 33433 69999999999875
No 166
>2epr_A POZ-, at HOOK-, and zinc finger-containing protein 1; C2H2, zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1
Probab=31.15 E-value=67 Score=18.27 Aligned_cols=37 Identities=22% Similarity=0.260 Sum_probs=21.9
Q ss_pred CCCCccccccccCCCCcEEcccCCccCHhHHHHHHHhcC--CCCCCCccc
Q 027545 25 DAGGFECNICFELAQDPIVTLCGHLFCWPCLYRWLHHHS--HSQECPVCK 72 (222)
Q Consensus 25 ~~~~~~C~ICl~~~~~pv~l~CGH~FC~~Cl~~wl~~~~--~~~~CPvCr 72 (222)
....+.|.+|-..+... .-|...++.+. ....|++|.
T Consensus 9 ~~k~~~C~~C~k~f~~~-----------~~L~~H~~~H~~~k~~~C~~C~ 47 (48)
T 2epr_A 9 TRKQVACEICGKIFRDV-----------YHLNRHKLSHSGEKPYSSGPSS 47 (48)
T ss_dssp CCCSEEETTTTEEESSH-----------HHHHHHGGGSCSCCCCCSCCCC
T ss_pred CCcCeeCCCCCcccCCH-----------HHHHHHHHhcCCCCCccCCCCC
Confidence 34568899887665543 33444444332 346888885
No 167
>2vnf_A ING 4, P29ING4, inhibitor of growth protein 4; acetylation, alternative splicing, anti-oncogene, cell cycle, coiled C nucleus, zinc, zinc-finger, ING4; HET: M3L; 1.76A {Homo sapiens} SCOP: g.50.1.2 PDB: 2k1j_A 2jmq_A 2qic_A*
Probab=31.06 E-value=5.4 Score=26.06 Aligned_cols=45 Identities=20% Similarity=0.571 Sum_probs=27.4
Q ss_pred CCCccccccccCCCCcEEc--c--cC-CccCHhHHHHHHHhc-CCCCCCCcccc
Q 027545 26 AGGFECNICFELAQDPIVT--L--CG-HLFCWPCLYRWLHHH-SHSQECPVCKA 73 (222)
Q Consensus 26 ~~~~~C~ICl~~~~~pv~l--~--CG-H~FC~~Cl~~wl~~~-~~~~~CPvCr~ 73 (222)
++...| ||.......++. . |. ..||..|+. +... .+...||.|++
T Consensus 8 ~e~~~C-~C~~~~~g~mi~CD~cdC~~~wfH~~Cvg--l~~~p~g~w~C~~C~~ 58 (60)
T 2vnf_A 8 NEPTYC-LCHQVSYGEMIGCDNPDCSIEWFHFACVG--LTTKPRGKWFCPRCSQ 58 (60)
T ss_dssp -CCEET-TTTEECCSEEEECSCTTCSSCEEETGGGT--CSSCCSSCCCCHHHHC
T ss_pred CCCCEE-ECCCcCCCCEEEeCCCCCCCceEehhcCC--CCcCCCCCEECcCccC
Confidence 355667 898764433332 3 54 579999986 3321 24678998864
No 168
>2gqj_A Zinc finger protein KIAA1196; ZF-C2H2 like domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=30.81 E-value=22 Score=24.27 Aligned_cols=43 Identities=14% Similarity=0.408 Sum_probs=26.1
Q ss_pred CCCCccccccccCCC-CcEEcccCCccCHhHHHHHHHhc---CCCCCCCccccccccc
Q 027545 25 DAGGFECNICFELAQ-DPIVTLCGHLFCWPCLYRWLHHH---SHSQECPVCKAVVQEE 78 (222)
Q Consensus 25 ~~~~~~C~ICl~~~~-~pv~l~CGH~FC~~Cl~~wl~~~---~~~~~CPvCr~~v~~~ 78 (222)
....+.|.+|-..+. ... -|...++.+ .....|++|.+.+...
T Consensus 21 ~~~~~~C~~C~k~f~~~~~-----------~L~~H~~~h~~~~~~~~C~~C~k~F~~~ 67 (98)
T 2gqj_A 21 ERGEAVCPTCNVVTRKTLV-----------GLKKHMEVCQKLQDALKCQHCRKQFKSK 67 (98)
T ss_dssp TTSCCCCTTTCCCCSSCSH-----------HHHHHHHHHHHHHHHHSCSSSCCCCSCH
T ss_pred cCCCcCCCCCCCChhhhHH-----------HHHHHHHHHcCCCCCEECCCCCCccCCH
Confidence 346688999887776 432 233322221 1246899999887743
No 169
>2d8z_A Four and A half LIM domains 2; skeletal muscle LIM-protein 3, LIM-domain protein DRAL, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=30.63 E-value=39 Score=21.56 Aligned_cols=25 Identities=20% Similarity=0.247 Sum_probs=12.1
Q ss_pred cccccccCCCCcEEcccCCccCHhH
Q 027545 30 ECNICFELAQDPIVTLCGHLFCWPC 54 (222)
Q Consensus 30 ~C~ICl~~~~~pv~l~CGH~FC~~C 54 (222)
.|..|.+.+.+..+..-+..||..|
T Consensus 7 ~C~~C~~~I~~~~~~a~~~~~H~~C 31 (70)
T 2d8z_A 7 GCVQCKKPITTGGVTYREQPWHKEC 31 (70)
T ss_dssp BCSSSCCBCCSSEEESSSSEEETTT
T ss_pred CCcccCCeeccceEEECccccCCCC
Confidence 4555555554444444444444443
No 170
>2cur_A Skeletal muscle LIM-protein 1; four and A half LIM domains protein 1, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=30.51 E-value=34 Score=21.89 Aligned_cols=25 Identities=16% Similarity=0.270 Sum_probs=10.3
Q ss_pred cccccccCCCCcEEcccCCccCHhH
Q 027545 30 ECNICFELAQDPIVTLCGHLFCWPC 54 (222)
Q Consensus 30 ~C~ICl~~~~~pv~l~CGH~FC~~C 54 (222)
.|.-|.+.+.+..+..-+..||..|
T Consensus 7 ~C~~C~~~I~~~~~~a~~~~~H~~C 31 (69)
T 2cur_A 7 GCVKCNKAITSGGITYQDQPWHADC 31 (69)
T ss_dssp CCSSSCCCCCTTCEEETTEEECTTT
T ss_pred CCcccCCEeCcceEEECccccccCc
Confidence 3455544444333333344444333
No 171
>1wyh_A SLIM 2, skeletal muscle LIM-protein 2; structural genomics, riken structural genomics/proteomics initiative, RSGI, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=30.40 E-value=24 Score=22.80 Aligned_cols=25 Identities=20% Similarity=0.409 Sum_probs=11.9
Q ss_pred cccccccCCC--CcEEcccCCccCHhH
Q 027545 30 ECNICFELAQ--DPIVTLCGHLFCWPC 54 (222)
Q Consensus 30 ~C~ICl~~~~--~pv~l~CGH~FC~~C 54 (222)
.|..|.+.+. +.++..-|..|+..|
T Consensus 7 ~C~~C~~~I~~~~~~~~a~~~~~H~~C 33 (72)
T 1wyh_A 7 GCSACGETVMPGSRKLEYGGQTWHEHC 33 (72)
T ss_dssp BCSSSCCBCCSSSCEECSTTCCEETTT
T ss_pred CCccCCCccccCccEEEECccccCccc
Confidence 4555555554 234444454444444
No 172
>1g47_A Pinch protein; LIM domain, Zn finger, cell adhesion; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=29.53 E-value=29 Score=22.67 Aligned_cols=40 Identities=25% Similarity=0.478 Sum_probs=24.1
Q ss_pred CCccccccccCCC--CcEEcccCCccCHhHHHHHHHhcCCCCCCCcccccccc
Q 027545 27 GGFECNICFELAQ--DPIVTLCGHLFCWPCLYRWLHHHSHSQECPVCKAVVQE 77 (222)
Q Consensus 27 ~~~~C~ICl~~~~--~pv~l~CGH~FC~~Cl~~wl~~~~~~~~CPvCr~~v~~ 77 (222)
....|.-|.+.+. +.++..-|..||..|+ .|-.|+..+..
T Consensus 10 ~~~~C~~C~~~I~~~~~~~~a~~~~~H~~CF-----------~C~~C~~~L~~ 51 (77)
T 1g47_A 10 ASATCERCKGGFAPAEKIVNSNGELYHEQCF-----------VCAQCFQQFPE 51 (77)
T ss_dssp CCCBCSSSCCBCCSTTTCEEETTEEECTTTC-----------CCTTTCCCCGG
T ss_pred CCCCchhcCCccCCCceEEEeCccEeccccC-----------eECCCCCCCCC
Confidence 3456888877664 4444455666665553 46677766654
No 173
>2cuq_A Four and A half LIM domains 3; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=28.69 E-value=55 Score=21.43 Aligned_cols=38 Identities=21% Similarity=0.396 Sum_probs=23.2
Q ss_pred ccccccccCCCCcEEcccCCccCHhHHHHHHHhcCCCCCCCcccccccc
Q 027545 29 FECNICFELAQDPIVTLCGHLFCWPCLYRWLHHHSHSQECPVCKAVVQE 77 (222)
Q Consensus 29 ~~C~ICl~~~~~pv~l~CGH~FC~~Cl~~wl~~~~~~~~CPvCr~~v~~ 77 (222)
..|..|.+.+.+..+..-+..|+..|+ +|-.|+..+..
T Consensus 16 ~~C~~C~~~I~~~~v~a~~~~~H~~CF-----------~C~~C~~~L~~ 53 (80)
T 2cuq_A 16 PRCARCSKTLTQGGVTYRDQPWHRECL-----------VCTGCQTPLAG 53 (80)
T ss_dssp CCCTTTCCCCCSCCEESSSSEECTTTC-----------BCSSSCCBCTT
T ss_pred CcCCCCCCEecCcEEEECCchhhhhhC-----------CcccCCCcCCC
Confidence 457777776665555555666665553 46777776653
No 174
>3arc_L Photosystem II reaction center protein L; PSII, membrane-protein complex, transmembrane alpha-helix, E transport, photosynthesis; HET: OEX CLA PHO BCR PL9 SQD LMG UNL LMT HTG DGD LHG HEM; 1.90A {Thermosynechococcus vulcanus} PDB: 1s5l_L* 3a0b_L* 3a0h_L* 2axt_L* 3bz1_L* 3bz2_L* 3kzi_L* 3prq_L* 3prr_L*
Probab=28.03 E-value=26 Score=20.73 Aligned_cols=16 Identities=44% Similarity=0.729 Sum_probs=10.3
Q ss_pred HHHHHHHHHHHHHHHH
Q 027545 204 LKNLLLLIGLFVILAL 219 (222)
Q Consensus 204 l~~~~~~~~~~~~~~l 219 (222)
|+|-+++.|++.|+.+
T Consensus 12 LNRTSLy~GLLlifvl 27 (37)
T 3arc_L 12 LNRTSLYLGLLLILVL 27 (37)
T ss_dssp CCHHHHHHHHHHHHHH
T ss_pred echhhHHHHHHHHHHH
Confidence 6677777766665544
No 175
>1v6g_A Actin binding LIM protein 2; LIM domain, zinc binding domain, ablim2, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=27.62 E-value=23 Score=23.58 Aligned_cols=39 Identities=21% Similarity=0.530 Sum_probs=28.2
Q ss_pred ccccccccCCCCcEEcccCCccCHhHHHHHHHhcCCCCCCCccccccccc
Q 027545 29 FECNICFELAQDPIVTLCGHLFCWPCLYRWLHHHSHSQECPVCKAVVQEE 78 (222)
Q Consensus 29 ~~C~ICl~~~~~pv~l~CGH~FC~~Cl~~wl~~~~~~~~CPvCr~~v~~~ 78 (222)
..|..|.+.+.+.++..-+..||..|+ .|-.|+..+...
T Consensus 16 ~~C~~C~~~I~~~~v~a~~~~wH~~CF-----------~C~~C~~~L~~~ 54 (81)
T 1v6g_A 16 TRCFSCDQFIEGEVVSALGKTYHPDCF-----------VCAVCRLPFPPG 54 (81)
T ss_dssp CBCTTTCCBCCSCCEEETTEEECTTTS-----------SCSSSCCCCCSS
T ss_pred CcCccccCEeccceEEECCceeCccCC-----------ccccCCCCCCCC
Confidence 378899888776666667777776664 588888877643
No 176
>1x63_A Skeletal muscle LIM-protein 1; LIM domain, four and A half LIM domains protein 1, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=27.62 E-value=48 Score=21.85 Aligned_cols=39 Identities=28% Similarity=0.616 Sum_probs=25.9
Q ss_pred ccccccccCCC--CcEEcccCCccCHhHHHHHHHhcCCCCCCCccccccccc
Q 027545 29 FECNICFELAQ--DPIVTLCGHLFCWPCLYRWLHHHSHSQECPVCKAVVQEE 78 (222)
Q Consensus 29 ~~C~ICl~~~~--~pv~l~CGH~FC~~Cl~~wl~~~~~~~~CPvCr~~v~~~ 78 (222)
..|..|.+.+. +.++..-+..||..|+ +|-.|+..+...
T Consensus 16 ~~C~~C~~~I~~~~~~~~a~~~~~H~~CF-----------~C~~C~~~L~~~ 56 (82)
T 1x63_A 16 PKCKGCFKAIVAGDQNVEYKGTVWHKDCF-----------TCSNCKQVIGTG 56 (82)
T ss_dssp CBCSSSCCBCCSSSCEEECSSCEEETTTC-----------CCSSSCCCCTTS
T ss_pred CcCccCCcccccCceEEEECccccccccC-----------chhhCCCccCCC
Confidence 46888888776 5555566666666553 577777776643
No 177
>1xwh_A Autoimmune regulator; PHD domain, Zn binding domain, apeced, nucleosome, E3 ligase, transcription; NMR {Homo sapiens} PDB: 2ke1_A 2kft_A
Probab=27.38 E-value=9.2 Score=25.29 Aligned_cols=48 Identities=23% Similarity=0.473 Sum_probs=30.7
Q ss_pred CCCCccccccccCCCCcEE--cccCCccCHhHHHHHHHh-cCCCCCCCccccc
Q 027545 25 DAGGFECNICFELAQDPIV--TLCGHLFCWPCLYRWLHH-HSHSQECPVCKAV 74 (222)
Q Consensus 25 ~~~~~~C~ICl~~~~~pv~--l~CGH~FC~~Cl~~wl~~-~~~~~~CPvCr~~ 74 (222)
...+..|.||.+.- .++ -.|...||..|+..-+.. -...-.||.|...
T Consensus 5 ~~~~~~C~vC~~~g--~ll~CD~C~~~fH~~Cl~ppl~~~P~g~W~C~~C~~~ 55 (66)
T 1xwh_A 5 QKNEDECAVCRDGG--ELICCDGCPRAFHLACLSPPLREIPSGTWRCSSCLQA 55 (66)
T ss_dssp CSCCCSBSSSSCCS--SCEECSSCCCEECTTTSSSCCSSCCSSCCCCHHHHHT
T ss_pred CCCCCCCccCCCCC--CEEEcCCCChhhcccccCCCcCcCCCCCeECccccCc
Confidence 34567799998742 222 268878999998743331 1245679999753
No 178
>1fjk_A Cardiac phospholamban; helix, membrane protein; NMR {Sus scrofa} SCOP: j.37.1.1 PDB: 1fjp_A 2kyv_A 1zll_A 2hyn_A 1n7l_A 2kb7_P 1plp_A
Probab=27.26 E-value=88 Score=19.46 Aligned_cols=15 Identities=7% Similarity=0.516 Sum_probs=7.5
Q ss_pred HHHHHHHHHHHHHHh
Q 027545 207 LLLLIGLFVILALLF 221 (222)
Q Consensus 207 ~~~~~~~~~~~~l~~ 221 (222)
+.+++.|+.++|+|+
T Consensus 35 fclilicllli~iiv 49 (52)
T 1fjk_A 35 FCLILIFLLLICIIV 49 (52)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH
Confidence 334445555555553
No 179
>1x68_A FHL5 protein; four-and-A-half LIM protein 5, zinc finger domain, AN actin- interacting protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=26.96 E-value=27 Score=22.96 Aligned_cols=39 Identities=13% Similarity=0.389 Sum_probs=27.7
Q ss_pred ccccccccCCCC----cEEcccCCccCHhHHHHHHHhcCCCCCCCccccccccc
Q 027545 29 FECNICFELAQD----PIVTLCGHLFCWPCLYRWLHHHSHSQECPVCKAVVQEE 78 (222)
Q Consensus 29 ~~C~ICl~~~~~----pv~l~CGH~FC~~Cl~~wl~~~~~~~~CPvCr~~v~~~ 78 (222)
..|..|.+.+.+ .++..-+..||..|+ +|-.|+..+...
T Consensus 6 ~~C~~C~~~I~~~g~~~~~~a~~~~wH~~CF-----------~C~~C~~~L~~~ 48 (76)
T 1x68_A 6 SGCVACSKPISGLTGAKFICFQDSQWHSECF-----------NCGKCSVSLVGK 48 (76)
T ss_dssp CCCTTTCCCCCTTTTCCEEEETTEEEEGGGC-----------BCTTTCCBCSSS
T ss_pred CCCccCCCcccCCCCceeEEECCcccCcccC-----------ChhhCCCcCCCC
Confidence 468888888775 566666777777664 588888877643
No 180
>2fiy_A Protein FDHE homolog; FDHE protein, structural genomics, P protein structure initiative, midwest center for structural genomics, MCSG; 2.10A {Pseudomonas aeruginosa} SCOP: e.59.1.1
Probab=26.88 E-value=4.7 Score=35.17 Aligned_cols=46 Identities=20% Similarity=0.424 Sum_probs=33.0
Q ss_pred CCCccccccccCCCCcEEc----ccC--CccCHhHHHHHHHhcCCCCCCCccccc
Q 027545 26 AGGFECNICFELAQDPIVT----LCG--HLFCWPCLYRWLHHHSHSQECPVCKAV 74 (222)
Q Consensus 26 ~~~~~C~ICl~~~~~pv~l----~CG--H~FC~~Cl~~wl~~~~~~~~CPvCr~~ 74 (222)
+..-.||+|-....-.++. .=| +..|.-|-.+|-. ....||.|...
T Consensus 180 ~~~~~CPvCGs~P~~s~l~~~g~~~G~R~l~Cs~C~t~W~~---~R~~C~~Cg~~ 231 (309)
T 2fiy_A 180 ESRTLCPACGSPPMAGMIRQGGKETGLRYLSCSLCACEWHY---VRIKCSHCEES 231 (309)
T ss_dssp TTCSSCTTTCCCEEEEEEEC----CCEEEEEETTTCCEEEC---CTTSCSSSCCC
T ss_pred ccCCCCCCCCCcCceeEEeecCCCCCcEEEEeCCCCCEEee---cCcCCcCCCCC
Confidence 6678899998766544443 234 4678888888866 46799999875
No 181
>2dlo_A Thyroid receptor-interacting protein 6; LIM domain, OPA-interacting protein 1, zyxin related protein 1 (ZRP-1), structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=26.28 E-value=24 Score=23.50 Aligned_cols=39 Identities=23% Similarity=0.482 Sum_probs=25.1
Q ss_pred CccccccccCCCCcEEcccCCccCHhHHHHHHHhcCCCCCCCcccccccc
Q 027545 28 GFECNICFELAQDPIVTLCGHLFCWPCLYRWLHHHSHSQECPVCKAVVQE 77 (222)
Q Consensus 28 ~~~C~ICl~~~~~pv~l~CGH~FC~~Cl~~wl~~~~~~~~CPvCr~~v~~ 77 (222)
...|.-|...+.+.++..-+..|+..|+ +|-.|+..+..
T Consensus 15 ~~~C~~C~~~I~~~~~~a~~~~~H~~CF-----------~C~~C~~~L~~ 53 (81)
T 2dlo_A 15 LEKCATCSQPILDRILRAMGKAYHPGCF-----------TCVVCHRGLDG 53 (81)
T ss_dssp CCBCTTTCCBCCSCCEEETTEEECTTTC-----------BCSSSCCBCTT
T ss_pred CCccccCCCeecceeEEECCccccHHhc-----------CcccCCCccCC
Confidence 4567777777766655566666665553 57777776653
No 182
>1iml_A CRIP, cysteine rich intestinal protein; metal-binding protein, LIM domain protein; NMR {Rattus rattus} SCOP: g.39.1.3 g.39.1.3
Probab=26.27 E-value=39 Score=22.09 Aligned_cols=43 Identities=14% Similarity=0.234 Sum_probs=30.1
Q ss_pred CCccccccccCCCC-cEEcccCCccCH-hHHHHHHHhcCCCCCCCccccc
Q 027545 27 GGFECNICFELAQD-PIVTLCGHLFCW-PCLYRWLHHHSHSQECPVCKAV 74 (222)
Q Consensus 27 ~~~~C~ICl~~~~~-pv~l~CGH~FC~-~Cl~~wl~~~~~~~~CPvCr~~ 74 (222)
+-+.|..|...+.+ .....=|.+||. .|..+... .+|-.|...
T Consensus 26 ~CF~C~~C~~~L~~~~~~~~~g~~yC~~~cy~~~f~-----~~C~~C~~~ 70 (76)
T 1iml_A 26 PCLKCEKCGKTLTSGGHAEHEGKPYCNHPCYSAMFG-----PKGFGRGGA 70 (76)
T ss_dssp TTCBCTTTCCBCCTTTEEEETTEEEETTTHHHHHSS-----CCCSSCCCS
T ss_pred CCCCccccCccCCCCceECcCCeEeeCHHHHHHHhC-----ccCCCcCCc
Confidence 56788999887765 344567888999 69865332 468888644
No 183
>1x5w_A Zinc finger protein 64, isoforms 1; ZNF338, nuclear protein, DNA binding, transcription, C2H2 type zinc finger, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1
Probab=26.12 E-value=69 Score=19.78 Aligned_cols=41 Identities=15% Similarity=0.239 Sum_probs=26.0
Q ss_pred CCCccccccccCCCCcEEcccCCccCHhHHHHHHHhcC--CCCCCCcccccccc
Q 027545 26 AGGFECNICFELAQDPIVTLCGHLFCWPCLYRWLHHHS--HSQECPVCKAVVQE 77 (222)
Q Consensus 26 ~~~~~C~ICl~~~~~pv~l~CGH~FC~~Cl~~wl~~~~--~~~~CPvCr~~v~~ 77 (222)
...+.|.+|-..+... .-|...++.+. ....|++|.+.+..
T Consensus 7 ~~~~~C~~C~k~f~~~-----------~~L~~H~~~H~~~~~~~C~~C~~~f~~ 49 (70)
T 1x5w_A 7 GHPEKCSECSYSCSSK-----------AALRIHERIHCTDRPFKCNYCSFDTKQ 49 (70)
T ss_dssp CCSEECSSSSCEESSH-----------HHHHHHHGGGCCSCSEECSSSSCEESS
T ss_pred CCCeECCCCCcccCCH-----------HHHHHHHHHcCCCCCEeCCCCCCccCC
Confidence 3568899887666553 33444444332 34689999888764
No 184
>1wig_A KIAA1808 protein; LIM domain, zinc finger, metal-binding protein, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=26.10 E-value=29 Score=22.77 Aligned_cols=36 Identities=14% Similarity=0.408 Sum_probs=19.6
Q ss_pred cccccccCCCCcEEcccCCccCHhHHHHHHHhcCCCCCCCccccccc
Q 027545 30 ECNICFELAQDPIVTLCGHLFCWPCLYRWLHHHSHSQECPVCKAVVQ 76 (222)
Q Consensus 30 ~C~ICl~~~~~pv~l~CGH~FC~~Cl~~wl~~~~~~~~CPvCr~~v~ 76 (222)
.|.-|...+.+.++..-+..||..|+ +|-.|+..+.
T Consensus 7 ~C~~C~~~I~~~~v~a~~~~wH~~CF-----------~C~~C~~~L~ 42 (73)
T 1wig_A 7 GCDSCEKYITGRVLEAGEKHYHPSCA-----------LCVRCGQMFA 42 (73)
T ss_dssp SCSSSCCCCSSCCBCCSSCCBCTTTS-----------CCSSSCCCCC
T ss_pred CcccCCCEecCeeEEeCCCCCCCCcC-----------EeCCCCCCCC
Confidence 46666665555444455555555443 4555655554
No 185
>2jne_A Hypothetical protein YFGJ; zinc fingers, two zinc, structural genomics, PSI-2, protein structure initiative; NMR {Escherichia coli} SCOP: g.41.18.1
Probab=25.79 E-value=1.9 Score=31.60 Aligned_cols=41 Identities=24% Similarity=0.472 Sum_probs=27.3
Q ss_pred CccccccccCCCCcEEcccCCccCHhHHHHHHHhcCCCCCCCccccccc
Q 027545 28 GFECNICFELAQDPIVTLCGHLFCWPCLYRWLHHHSHSQECPVCKAVVQ 76 (222)
Q Consensus 28 ~~~C~ICl~~~~~pv~l~CGH~FC~~Cl~~wl~~~~~~~~CPvCr~~v~ 76 (222)
+..||+|...+.. .=++.+|..|-..+.+ ...||.|.+++.
T Consensus 32 ~~~CP~Cq~eL~~----~g~~~hC~~C~~~f~~----~a~CPdC~q~Le 72 (101)
T 2jne_A 32 ELHCPQCQHVLDQ----DNGHARCRSCGEFIEM----KALCPDCHQPLQ 72 (101)
T ss_dssp CCBCSSSCSBEEE----ETTEEEETTTCCEEEE----EEECTTTCSBCE
T ss_pred cccCccCCCccee----cCCEEECccccchhhc----cccCcchhhHHH
Confidence 3889999976642 1234457777654332 458999998876
No 186
>1x6a_A LIMK-2, LIM domain kinase 2; LIM-kinase 2, zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=25.50 E-value=26 Score=23.27 Aligned_cols=36 Identities=22% Similarity=0.558 Sum_probs=22.5
Q ss_pred cccccccCCCCcEEcccCCccCHhHHHHHHHhcCCCCCCCccccccc
Q 027545 30 ECNICFELAQDPIVTLCGHLFCWPCLYRWLHHHSHSQECPVCKAVVQ 76 (222)
Q Consensus 30 ~C~ICl~~~~~pv~l~CGH~FC~~Cl~~wl~~~~~~~~CPvCr~~v~ 76 (222)
.|..|.+.+.+.++..-+..||..|+ .|-.|+..+.
T Consensus 17 ~C~~C~~~I~~~~~~a~~~~~H~~CF-----------~C~~C~~~L~ 52 (81)
T 1x6a_A 17 FCHGCSLLMTGPFMVAGEFKYHPECF-----------ACMSCKVIIE 52 (81)
T ss_dssp BCTTTCCBCCSCCBCCTTCCBCTTSC-----------BCTTTCCBCC
T ss_pred cCccCCCCcCceEEEECCceeccccC-----------CccCCCCccC
Confidence 57777776665555555666665553 4667776664
No 187
>2rdd_B UPF0092 membrane protein YAJC; drug resistance, multidrug efflux, transporter, antiporter, novel transmembrane helix, ACRB, inner membrane; HET: AIC; 3.50A {Escherichia coli}
Probab=25.45 E-value=44 Score=19.48 Aligned_cols=16 Identities=19% Similarity=0.388 Sum_probs=9.5
Q ss_pred HHHHHHHHHHHHHHHh
Q 027545 206 NLLLLIGLFVILALLF 221 (222)
Q Consensus 206 ~~~~~~~~~~~~~l~~ 221 (222)
.++.++++++++|++.
T Consensus 5 ~~l~~v~~~~ifYFl~ 20 (37)
T 2rdd_B 5 LILMLVVFGLIFYFMI 20 (37)
T ss_dssp HHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3555666666766653
No 188
>2ro1_A Transcription intermediary factor 1-beta; KAP, TIF, PHD finger, bromodomain, SUMO, acetylation, alternative splicing, metal-binding, nucleus; NMR {Homo sapiens}
Probab=24.40 E-value=16 Score=29.29 Aligned_cols=46 Identities=17% Similarity=0.465 Sum_probs=28.6
Q ss_pred ccccccccCCCCcEEcccCCccCHhHHHHHHHh-cCCCCCCCccccc
Q 027545 29 FECNICFELAQDPIVTLCGHLFCWPCLYRWLHH-HSHSQECPVCKAV 74 (222)
Q Consensus 29 ~~C~ICl~~~~~pv~l~CGH~FC~~Cl~~wl~~-~~~~~~CPvCr~~ 74 (222)
..|.+|.+.-.--.--.|-..||..|+..-+.. -.+...||.|+..
T Consensus 3 ~~C~~C~~~g~ll~Cd~C~~~~H~~Cl~p~l~~~p~g~W~C~~C~~~ 49 (189)
T 2ro1_A 3 TICRVCQKPGDLVMCNQCEFCFHLDCHLPALQDVPGEEWSCSLCHVL 49 (189)
T ss_dssp CCBTTTCCCSSCCCCTTTCCBCCSTTSTTCCSSCCCTTCCTTTTSCS
T ss_pred CcCccCCCCCceeECCCCCchhccccCCCCcccCCCCCCCCcCccCC
Confidence 458888854321111257778999998653432 1245789999865
No 189
>1x4k_A Skeletal muscle LIM-protein 3; LIM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=24.39 E-value=31 Score=22.19 Aligned_cols=25 Identities=16% Similarity=0.320 Sum_probs=12.7
Q ss_pred cccccccCCCC--cEEcccCCccCHhH
Q 027545 30 ECNICFELAQD--PIVTLCGHLFCWPC 54 (222)
Q Consensus 30 ~C~ICl~~~~~--pv~l~CGH~FC~~C 54 (222)
.|..|.+.+.+ .++..-|..||..|
T Consensus 7 ~C~~C~~~I~~~~~~~~a~~~~~H~~C 33 (72)
T 1x4k_A 7 GCQECKKTIMPGTRKMEYKGSSWHETC 33 (72)
T ss_dssp CBSSSCCCCCSSSCEEEETTEEEETTT
T ss_pred CCccCCCcccCCceEEEECcCeecccC
Confidence 46666665552 34444455555444
No 190
>1x3h_A Leupaxin; paxillin family, protein-protein interaction, LIM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=24.14 E-value=64 Score=21.10 Aligned_cols=38 Identities=13% Similarity=0.327 Sum_probs=22.8
Q ss_pred ccccccccCCCCcEEcccCCccCHhHHHHHHHhcCCCCCCCcccccccc
Q 027545 29 FECNICFELAQDPIVTLCGHLFCWPCLYRWLHHHSHSQECPVCKAVVQE 77 (222)
Q Consensus 29 ~~C~ICl~~~~~pv~l~CGH~FC~~Cl~~wl~~~~~~~~CPvCr~~v~~ 77 (222)
..|..|.+.+.+.++..-+..|+..|+ +|-.|+..+..
T Consensus 16 ~~C~~C~~~I~~~~v~a~~~~~H~~CF-----------~C~~C~~~L~~ 53 (80)
T 1x3h_A 16 PKCGGCNRPVLENYLSAMDTVWHPECF-----------VCGDCFTSFST 53 (80)
T ss_dssp CBCTTTCCBCCSSCEEETTEEECTTTC-----------BCSSSCCBSCS
T ss_pred CccccCCCeecceeEEECCCeEecCcC-----------ChhhCCCCCCC
Confidence 357777776665555555555555543 57777776654
No 191
>1yod_A Water-solublized phospholamban; protein design, water-soluble, de novo protein; 1.80A {Synthetic}
Probab=23.94 E-value=1e+02 Score=17.17 Aligned_cols=9 Identities=0% Similarity=-0.337 Sum_probs=3.7
Q ss_pred HHHHHHHHH
Q 027545 212 GLFVILALL 220 (222)
Q Consensus 212 ~~~~~~~l~ 220 (222)
.|..++|++
T Consensus 19 ICllLi~Ii 27 (30)
T 1yod_A 19 ICQELKEIR 27 (30)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 344444443
No 192
>1wee_A PHD finger family protein; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: g.50.1.2
Probab=23.30 E-value=32 Score=22.83 Aligned_cols=53 Identities=17% Similarity=0.237 Sum_probs=31.4
Q ss_pred CCCCCCCCccccccccCCCCc--EE--cccCCccCHhHHHHHHH-hcCCCCCCCccccc
Q 027545 21 NSANDAGGFECNICFELAQDP--IV--TLCGHLFCWPCLYRWLH-HHSHSQECPVCKAV 74 (222)
Q Consensus 21 ~~~~~~~~~~C~ICl~~~~~p--v~--l~CGH~FC~~Cl~~wl~-~~~~~~~CPvCr~~ 74 (222)
+...+.+...| ||.....+. .+ -.|..-||..|+.--.. .......||.|+..
T Consensus 9 e~~~~~~~~~C-~C~~~~~~g~~mI~Cd~C~~W~H~~Cvg~~~~~~~~~~~~C~~C~~~ 66 (72)
T 1wee_A 9 ERGVDNWKVDC-KCGTKDDDGERMLACDGCGVWHHTRCIGINNADALPSKFLCFRCIEL 66 (72)
T ss_dssp SCSSCSSEECC-TTCCCSCCSSCEEECSSSCEEEETTTTTCCTTSCCCSCCCCHHHHHH
T ss_pred cCCCCCcceEe-eCCCccCCCCcEEECCCCCCccCCeeeccCccccCCCcEECCCccCC
Confidence 33445667889 798765442 33 26776778888742111 11245788888753
No 193
>2lv2_A Insulinoma-associated protein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Homo sapiens}
Probab=23.28 E-value=1.7e+02 Score=19.63 Aligned_cols=42 Identities=21% Similarity=0.269 Sum_probs=26.5
Q ss_pred CCCccccccccCCCCcEEcccCCccCHhHHHHHHHhcC--CCCCCCccccccccc
Q 027545 26 AGGFECNICFELAQDPIVTLCGHLFCWPCLYRWLHHHS--HSQECPVCKAVVQEE 78 (222)
Q Consensus 26 ~~~~~C~ICl~~~~~pv~l~CGH~FC~~Cl~~wl~~~~--~~~~CPvCr~~v~~~ 78 (222)
.....|++|-..+... .-|...++.+. ....|+.|.+.+...
T Consensus 26 ~~~h~C~~Cgk~F~~~-----------~~L~~H~~~H~~~k~~~C~~C~k~F~~~ 69 (85)
T 2lv2_A 26 AECHLCPVCGESFASK-----------GAQERHLRLLHAAQVFPCKYCPATFYSS 69 (85)
T ss_dssp CTTEECTTSCCEESSH-----------HHHHHHHHTTSCSSSEECTTSSCEESSH
T ss_pred CCCEECCCCCCCcCcH-----------HHHhhhhhhccCCCccCCCCCCCEeCCH
Confidence 3456788887665553 34555555432 356899999887643
No 194
>3c6w_A P28ING5, inhibitor of growth protein 5; chromatin, PHD, ING, epigenetics, alternative splicing, metal-binding, phosphoprotein, zinc; HET: M3L; 1.75A {Homo sapiens} PDB: 2pnx_A*
Probab=21.79 E-value=10 Score=24.62 Aligned_cols=45 Identities=20% Similarity=0.554 Sum_probs=27.5
Q ss_pred CCCccccccccCCCCcEEc--c--cC-CccCHhHHHHHHHhc-CCCCCCCcccc
Q 027545 26 AGGFECNICFELAQDPIVT--L--CG-HLFCWPCLYRWLHHH-SHSQECPVCKA 73 (222)
Q Consensus 26 ~~~~~C~ICl~~~~~pv~l--~--CG-H~FC~~Cl~~wl~~~-~~~~~CPvCr~ 73 (222)
++...| ||.+.....++. . |. .-||..|+. +... .....||.|++
T Consensus 7 ~e~~yC-~C~~~~~g~mi~CD~~~C~~~wfH~~Cvg--l~~~p~~~w~Cp~C~~ 57 (59)
T 3c6w_A 7 NEPTYC-LCHQVSYGEMIGCDNPDCPIEWFHFACVD--LTTKPKGKWFCPRCVQ 57 (59)
T ss_dssp -CCEET-TTTEECCSEEEECSCTTCSSCEEETGGGT--CSSCCSSCCCCHHHHC
T ss_pred CCCcEE-ECCCCCCCCeeEeeCCCCCCCCEecccCC--cccCCCCCEECcCccC
Confidence 345667 898764433332 3 65 589999986 3321 24678998865
No 195
>3kv5_D JMJC domain-containing histone demethylation protein 1D; epigenetics, histone CODE, jumonji lysine demethylase, metal-binding, zinc, zinc-finger; HET: OGA; 2.39A {Homo sapiens} PDB: 3kv6_A*
Probab=21.49 E-value=26 Score=32.34 Aligned_cols=52 Identities=19% Similarity=0.427 Sum_probs=30.8
Q ss_pred CCCCCCccccccccCCC--CcEE--cccCCccCHhHHHHHHHh--cCCCCCCCcccccc
Q 027545 23 ANDAGGFECNICFELAQ--DPIV--TLCGHLFCWPCLYRWLHH--HSHSQECPVCKAVV 75 (222)
Q Consensus 23 ~~~~~~~~C~ICl~~~~--~pv~--l~CGH~FC~~Cl~~wl~~--~~~~~~CPvCr~~v 75 (222)
+...+...| ||..... ..++ -.|.--||..|+.---.. ......||.|+...
T Consensus 32 ~~~~~~~yC-~C~~~~d~~~~MIqCd~C~~WfH~~Cvgl~~~~~~~~~~~~C~~C~~~~ 89 (488)
T 3kv5_D 32 PPPPPPVYC-VCRQPYDVNRFMIECDICKDWFHGSCVGVEEHHAVDIDLYHCPNCAVLH 89 (488)
T ss_dssp CCCCCCEET-TTTEECCTTSCEEEBTTTCCEEEHHHHTCCGGGGGGEEEBCCHHHHHHH
T ss_pred cCCCCCeEE-eCCCcCCCCCCeEEccCCCCceeeeecCcCcccccCCCEEECCCCcCCc
Confidence 334455667 8887553 2222 268888999998521111 01357899998753
No 196
>2lat_A Dolichyl-diphosphooligosaccharide--protein glycosyltransferase subunit 4; membrane protein, oligosaccharyltransferase, integral membra protein; NMR {Homo sapiens}
Probab=21.41 E-value=58 Score=19.35 Aligned_cols=19 Identities=16% Similarity=0.343 Sum_probs=13.9
Q ss_pred HHHHHHHHHHHHHHHHHHh
Q 027545 203 VLKNLLLLIGLFVILALLF 221 (222)
Q Consensus 203 ~l~~~~~~~~~~~~~~l~~ 221 (222)
=|.++..+||++.++..++
T Consensus 6 qL~~lan~lG~~~~~LIVl 24 (37)
T 2lat_A 6 QLAIFANMLGVSLFLLVVL 24 (37)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3788888888877766554
No 197
>3shb_A E3 ubiquitin-protein ligase UHRF1; unmodified histone, methylation, UHRF1, PHD, ligase-NUCL protein complex; 1.80A {Homo sapiens}
Probab=21.29 E-value=8.9 Score=26.47 Aligned_cols=44 Identities=23% Similarity=0.423 Sum_probs=25.5
Q ss_pred cccccccCCCCcEEc---ccCCccCHhHHHHHHHhcC-CC-CCCCcccc
Q 027545 30 ECNICFELAQDPIVT---LCGHLFCWPCLYRWLHHHS-HS-QECPVCKA 73 (222)
Q Consensus 30 ~C~ICl~~~~~pv~l---~CGH~FC~~Cl~~wl~~~~-~~-~~CPvCr~ 73 (222)
.|.||...-....++ .|...||..|+..-|.... .. -.||.|+.
T Consensus 28 ~C~vC~~~~d~~~ll~CD~C~~~yH~~Cl~PpL~~~P~g~~W~C~~C~~ 76 (77)
T 3shb_A 28 ACHLCGGRQDPDKQLMCDECDMAFHIYCLDPPLSSVPSEDEWYCPECRN 76 (77)
T ss_dssp SBTTTCCCSCGGGEEECTTTCCEEETTTSSSCCSSCCSSSCCCCTTTC-
T ss_pred cCCccCCCCCCcceeEeCCCCCccCcccCCCcccCCCCCCceECcCccc
Confidence 355665543322233 6788899999875444221 23 68998875
No 198
>2e6s_A E3 ubiquitin-protein ligase UHRF2; PHD domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=20.94 E-value=46 Score=22.67 Aligned_cols=44 Identities=23% Similarity=0.437 Sum_probs=26.9
Q ss_pred cccccccCCCC-cEEc--ccCCccCHhHHHHHHHhc-CC-CCCCCcccc
Q 027545 30 ECNICFELAQD-PIVT--LCGHLFCWPCLYRWLHHH-SH-SQECPVCKA 73 (222)
Q Consensus 30 ~C~ICl~~~~~-pv~l--~CGH~FC~~Cl~~wl~~~-~~-~~~CPvCr~ 73 (222)
.|.||...-.. .+++ .|...||..|+..-+... .+ .-.||.|..
T Consensus 28 ~C~vC~~~~~~~~ll~CD~C~~~yH~~Cl~Ppl~~~P~g~~W~C~~C~~ 76 (77)
T 2e6s_A 28 SCRVCGGKHEPNMQLLCDECNVAYHIYCLNPPLDKVPEEEYWYCPSCKT 76 (77)
T ss_dssp SCSSSCCCCCSTTEEECSSSCCEEETTSSSSCCSSCCCSSCCCCTTTCC
T ss_pred CCcCcCCcCCCCCEEEcCCCCccccccccCCCccCCCCCCCcCCcCccC
Confidence 56778754322 2333 788889999987544322 12 467888864
No 199
>3arc_I Photosystem II reaction center protein I; PSII, membrane-protein complex, transmembrane alpha-helix, E transport, photosynthesis; HET: OEX CLA PHO BCR PL9 SQD LMG UNL LMT HTG DGD LHG HEM; 1.90A {Thermosynechococcus vulcanus} PDB: 1s5l_I* 2axt_I* 3bz1_I* 3bz2_I* 3kzi_I* 3prq_I* 3prr_I* 3a0b_I* 3a0h_I*
Probab=20.72 E-value=59 Score=19.35 Aligned_cols=16 Identities=13% Similarity=0.256 Sum_probs=8.0
Q ss_pred HHHHHHHHHHHHHHHh
Q 027545 206 NLLLLIGLFVILALLF 221 (222)
Q Consensus 206 ~~~~~~~~~~~~~l~~ 221 (222)
+|+.+..++++++|++
T Consensus 5 Ki~Vy~vV~ffvsLFi 20 (38)
T 3arc_I 5 KITVYIVVTFFVLLFV 20 (38)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred EeeehhHHHHHHHHHH
Confidence 3455555555555544
No 200
>3a1b_A DNA (cytosine-5)-methyltransferase 3A, histone H3; zinc-finger, histone binding, chromosomal protein, DNA damag repair, DNA-binding, methylation; HET: DNA; 2.29A {Homo sapiens} PDB: 3a1a_A*
Probab=20.63 E-value=53 Score=25.80 Aligned_cols=44 Identities=23% Similarity=0.431 Sum_probs=29.5
Q ss_pred CCccccccccCCCCcEEc-----ccCCccCHhHHHHHHHh-------cCCCCCCCcccc
Q 027545 27 GGFECNICFELAQDPIVT-----LCGHLFCWPCLYRWLHH-------HSHSQECPVCKA 73 (222)
Q Consensus 27 ~~~~C~ICl~~~~~pv~l-----~CGH~FC~~Cl~~wl~~-------~~~~~~CPvCr~ 73 (222)
.+..|.||-+- ..++ .|-..||..||...+.. ....-.|=+|.-
T Consensus 78 ~~~yC~wC~~G---g~l~~Cdn~~C~r~FC~~CI~~nvG~~~~~~i~~~d~W~Cy~C~P 133 (159)
T 3a1b_A 78 YQSYCTICCGG---REVLMCGNNNCCRCFCVECVDLLVGPGAAQAAIKEDPWNCYMCGH 133 (159)
T ss_dssp SBSSCTTTSCC---SEEEECSSTTTCCEEEHHHHHHHTCTTHHHHHHTSSSCCCTTTCS
T ss_pred CcceeeEecCC---CeEEeeCCCCCCCchhHHHHHHhcCHhHHHHHhccCCCEEEecCC
Confidence 45678888763 2333 57788999999876542 134567888864
No 201
>2g6q_A Inhibitor of growth protein 2; protein-peptide complex, gene regulation, apoptosis; HET: M3L; 2.00A {Mus musculus}
Probab=20.14 E-value=12 Score=24.66 Aligned_cols=45 Identities=20% Similarity=0.561 Sum_probs=27.1
Q ss_pred CCCccccccccCCCCcEEc--c--cC-CccCHhHHHHHHHh-cCCCCCCCcccc
Q 027545 26 AGGFECNICFELAQDPIVT--L--CG-HLFCWPCLYRWLHH-HSHSQECPVCKA 73 (222)
Q Consensus 26 ~~~~~C~ICl~~~~~pv~l--~--CG-H~FC~~Cl~~wl~~-~~~~~~CPvCr~ 73 (222)
++...| ||.+.....++. . |. .-||..|+. +.. -.....||.|+.
T Consensus 9 ~e~~yC-~C~~~~~g~MI~CD~c~C~~~WfH~~Cvg--l~~~p~~~w~Cp~C~~ 59 (62)
T 2g6q_A 9 NEPTYC-LCNQVSYGEMIGCDNEQCPIEWFHFSCVS--LTYKPKGKWYCPKCRG 59 (62)
T ss_dssp -CCEET-TTTEECCSEEEECSCTTCSSCEEETGGGT--CSSCCSSCCCCHHHHT
T ss_pred CCCcEE-ECCCCCCCCeeeeeCCCCCcccEecccCC--cCcCCCCCEECcCccc
Confidence 355667 898854333222 3 54 679999986 221 124678999865
Done!