BLAST Results

Query Summary

Your job contains 1 sequence.

Parameters
Threshold: 0.001
Maximum number of alignments shown: 100
BLAST filter: on

Query Sequence

>027546
MIDEILRRLQSSDVKGNVSAQREAVESWRREKLEEAKQLSIGRQGINSTILQEEARMLVR
VLESDWAALSEEIGLWIPTEIIHKEHGDKPKGVEDEDLDEDVLPGRPPPPECHAELHTDY
DGVAIRWGLTHHRDSAADCCQACIEQAKRAKPGQMKCNIWVYCPAETGCHSPDKYEHKYQ
ECWLKYAEKPKLNFKDRYSEKYRNAHPAAPLVVPWVSGVVSL

High Scoring Gene Products

Symbol, full name Information P value
AT4G33380 protein from Arabidopsis thaliana 1.2e-81

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Raw Blast Data

BLASTP 2.0MP-WashU [04-May-2006] [linux26-i686-ILP32F64 2006-05-09T11:47:08]

Copyright (C) 1996-2006 Washington University, Saint Louis, Missouri USA.
All Rights Reserved.

Reference:  Gish, W. (1996-2006) http://blast.wustl.edu

Query=  027546
        (222 letters)

Database:  go_20130330-seqdb.fasta
           368,745 sequences; 169,044,731 total letters.
Searching....10....20....30....40....50....60....70....80....90....100% done

                                                                     Smallest
                                                                       Sum
                                                              High  Probability
Sequences producing High-scoring Segment Pairs:              Score  P(N)      N

TAIR|locus:2119191 - symbol:AT4G33380 species:3702 "Arabi...   819  1.2e-81   1


>TAIR|locus:2119191 [details] [associations]
            symbol:AT4G33380 species:3702 "Arabidopsis thaliana"
            [GO:0005794 "Golgi apparatus" evidence=IDA] GO:GO:0005794
            EMBL:CP002687 GenomeReviews:CT486007_GR EMBL:AY064143 EMBL:AY097415
            IPI:IPI00544775 RefSeq:NP_195064.2 UniGene:At.27071 PRIDE:Q8VZI6
            EnsemblPlants:AT4G33380.1 GeneID:829475 KEGG:ath:AT4G33380
            TAIR:At4g33380 eggNOG:NOG330482 HOGENOM:HOG000239516
            InParanoid:Q8VZI6 OMA:CPSEFGC PhylomeDB:Q8VZI6
            ProtClustDB:CLSN2690353 Genevestigator:Q8VZI6 Uniprot:Q8VZI6
        Length = 328

 Score = 819 (293.4 bits), Expect = 1.2e-81, P = 1.2e-81
 Identities = 145/221 (65%), Positives = 174/221 (78%)

Query:     1 MIDEILRRLQSSDVKGNVSAQREAVESWRREKLEEAKQLSIGRQGINSTILQEEARMLVR 60
             ++DEIL+RL+S + K NV+  RE VE+WR EKLEEAK+L  G+ G+NST++ EEA MLVR
Sbjct:   110 LVDEILQRLKSFEDKSNVTQLREVVETWRNEKLEEAKELIQGQNGVNSTLIVEEAGMLVR 169

Query:    61 VLESDWAALSEEIGLWIPTEIIHKEHGDKPKGXXXXXXXXXXXPGRPPPPECHAELHTDY 120
              LE +W  LSEEIG W+P E+ + EH DKP+G            GRP P  C+AELHTDY
Sbjct:   170 ALELEWDVLSEEIGFWLPAEVTNVEHDDKPEGEEEPEEILA---GRPVPAVCNAELHTDY 226

Query:   121 DGVAIRWGLTHHRDSAADCCQACIEQAKRAKPGQMKCNIWVYCPAETGCHSPDKYEHKYQ 180
              G A+RWGLTHH++SAADCCQAC++QAKRAKPG+ +CNIWVYCP+E GC SPD YEHK+Q
Sbjct:   227 GGAAVRWGLTHHKESAADCCQACLDQAKRAKPGETRCNIWVYCPSEFGCFSPDIYEHKHQ 286

Query:   181 ECWLKYAEKPKLNFKDRYSEKYRNAHPAAPLVVPWVSGVVS 221
             ECWLKYAEKPK NFKDRYSE YRN HP AP +VPWVSGVV+
Sbjct:   287 ECWLKYAEKPKQNFKDRYSETYRNNHPKAPSIVPWVSGVVT 327


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.317   0.133   0.429    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0      222       211   0.00081  112 3  11 22  0.39    33
                                                     31  0.48    35


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  1
  No. of states in DFA:  623 (66 KB)
  Total size of DFA:  217 KB (2119 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  18.73u 0.08s 18.81t   Elapsed:  00:00:01
  Total cpu time:  18.73u 0.08s 18.81t   Elapsed:  00:00:01
  Start:  Fri May 10 22:10:24 2013   End:  Fri May 10 22:10:25 2013

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