BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 027546
         (222 letters)

Database: swissprot 
           539,616 sequences; 191,569,459 total letters

Searching..................................................done



>sp|B8H5C6|Y3506_CAUCN UPF0301 protein CCNA_03506 OS=Caulobacter crescentus (strain NA1000
           / CB15N) GN=CCNA_03506 PE=3 SV=1
          Length = 195

 Score = 34.3 bits (77), Expect = 0.65,   Method: Compositional matrix adjust.
 Identities = 32/110 (29%), Positives = 46/110 (41%), Gaps = 29/110 (26%)

Query: 102 VLPGRPPPPECHAELHTD-----------YDGVAIRWGLTHHRDSAADCCQACIEQAKRA 150
           VL G P   E    LHTD            DGVA    LT  RD A D   + I++ +++
Sbjct: 78  VLLGGPLERERGFVLHTDDFSSPDSTLPVADGVA----LTATRD-ALDAMASAIKRPRKS 132

Query: 151 ---------KPGQM----KCNIWVYCPAETGCHSPDKYEHKYQECWLKYA 187
                     PGQ+    + N+W+ C A+ G    + +EHK+     K  
Sbjct: 133 LLALGYAGWGPGQLEQELRDNVWLICDADEGLLFDEDHEHKWTRALAKLG 182


>sp|Q9A311|Y3395_CAUCR UPF0301 protein CC_3395 OS=Caulobacter crescentus (strain ATCC
           19089 / CB15) GN=CC_3395 PE=3 SV=1
          Length = 195

 Score = 34.3 bits (77), Expect = 0.65,   Method: Compositional matrix adjust.
 Identities = 32/110 (29%), Positives = 46/110 (41%), Gaps = 29/110 (26%)

Query: 102 VLPGRPPPPECHAELHTD-----------YDGVAIRWGLTHHRDSAADCCQACIEQAKRA 150
           VL G P   E    LHTD            DGVA    LT  RD A D   + I++ +++
Sbjct: 78  VLLGGPLERERGFVLHTDDFSSPDSTLPVADGVA----LTATRD-ALDAMASAIKRPRKS 132

Query: 151 ---------KPGQM----KCNIWVYCPAETGCHSPDKYEHKYQECWLKYA 187
                     PGQ+    + N+W+ C A+ G    + +EHK+     K  
Sbjct: 133 LLALGYAGWGPGQLEQELRDNVWLICDADEGLLFDEDHEHKWTRALAKLG 182


>sp|P0C0K7|EPHB6_RAT Ephrin type-B receptor 6 OS=Rattus norvegicus GN=Ephb6 PE=2 SV=3
          Length = 1013

 Score = 31.6 bits (70), Expect = 4.8,   Method: Compositional matrix adjust.
 Identities = 23/69 (33%), Positives = 29/69 (42%), Gaps = 5/69 (7%)

Query: 105 GRPPPPECHAELHTDYDGVAIRWGLTHHRDSAADCCQACIEQAKRAKPGQMKCNIWVYCP 164
           G PP   C+ E          R    H        CQAC E + +A PG + C+    CP
Sbjct: 273 GSPPRLHCNGEGRWMVAVGGCRCQPGHQPARGDKLCQACPEGSYKALPGNVPCSP---CP 329

Query: 165 AETGCHSPD 173
           A +  HSPD
Sbjct: 330 ARS--HSPD 336


  Database: swissprot
    Posted date:  Mar 23, 2013  2:32 AM
  Number of letters in database: 191,569,459
  Number of sequences in database:  539,616
  
Lambda     K      H
   0.316    0.133    0.425 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 93,852,879
Number of Sequences: 539616
Number of extensions: 4228815
Number of successful extensions: 11224
Number of sequences better than 100.0: 22
Number of HSP's better than 100.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 17
Number of HSP's that attempted gapping in prelim test: 11212
Number of HSP's gapped (non-prelim): 28
length of query: 222
length of database: 191,569,459
effective HSP length: 113
effective length of query: 109
effective length of database: 130,592,851
effective search space: 14234620759
effective search space used: 14234620759
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 59 (27.3 bits)