Query 027546
Match_columns 222
No_of_seqs 100 out of 105
Neff 3.7
Searched_HMMs 13730
Date Mon Mar 25 19:34:04 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/027546.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/027546hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1io1a_ e.32.1.1 (A:) Phase 1 51.0 12 0.00084 28.5 5.3 37 2-38 29-69 (395)
2 d2tpta1 a.46.2.1 (A:1-70) Thym 37.5 10 0.00076 24.5 2.6 63 1-64 3-65 (70)
3 d2zjq51 d.45.1.1 (5:52-122) Ri 36.5 8.2 0.0006 26.5 2.0 35 33-67 32-66 (71)
4 d1dd3a2 d.45.1.1 (A:58-128) Ri 33.0 14 0.001 25.2 2.8 35 33-67 28-66 (71)
5 d2qj2a1 g.10.1.1 (A:36-126) He 26.5 23 0.0017 24.4 3.1 41 131-188 27-67 (91)
6 d1ctfa_ d.45.1.1 (A:) Ribosoma 24.4 21 0.0015 24.1 2.4 35 33-67 28-63 (68)
7 d3bnea2 b.12.1.1 (A:7-149) Pla 23.2 8.2 0.0006 29.5 0.0 26 64-89 21-46 (143)
8 d1fpoa2 a.23.1.1 (A:77-171) HS 20.2 1.2E+02 0.0085 20.2 7.1 64 3-74 20-86 (95)
9 d2trcp_ c.47.1.6 (P:) Phosduci 18.9 38 0.0027 25.9 3.2 20 23-42 75-94 (217)
10 d1bwva1 c.1.14.1 (A:150-478) R 17.7 43 0.0032 27.9 3.5 37 18-70 267-316 (328)
No 1
>d1io1a_ e.32.1.1 (A:) Phase 1 flagellin {Salmonella typhimurium [TaxId: 90371]}
Probab=50.98 E-value=12 Score=28.54 Aligned_cols=37 Identities=16% Similarity=0.291 Sum_probs=24.7
Q ss_pred HHHHHHHhhhcc----cCCChHHHHHHHHHHHHHHHHHHHH
Q 027546 2 IDEILRRLQSSD----VKGNVSAQREAVESWRREKLEEAKQ 38 (222)
Q Consensus 2 ~~ei~~rL~~l~----~~~n~~~~~~a~e~Wr~ekl~~~k~ 38 (222)
+.+||||+|+|- ..++...+|+|+..=-.+-++++-.
T Consensus 29 ~~~iL~r~reLavqaan~t~~~~dr~ai~~E~~~l~~ei~~ 69 (395)
T d1io1a_ 29 INNNLQRVRELAVQSANSTNSQSDLDSIQAEITQRLNEIDR 69 (395)
T ss_dssp HHHHHHHHHHHHHHHTCTTCCHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhccCCCCHHHHHHHHHHHHHHHHHHHH
Confidence 357999999984 2346888999987644444444443
No 2
>d2tpta1 a.46.2.1 (A:1-70) Thymidine phosphorylase {Escherichia coli [TaxId: 562]}
Probab=37.51 E-value=10 Score=24.51 Aligned_cols=63 Identities=13% Similarity=0.128 Sum_probs=47.2
Q ss_pred CHHHHHHHhhhcccCCChHHHHHHHHHHHHHHHHHHHHhhhcccccCCcchHHHHHHHHHHHhh
Q 027546 1 MIDEILRRLQSSDVKGNVSAQREAVESWRREKLEEAKQLSIGRQGINSTILQEEARMLVRVLES 64 (222)
Q Consensus 1 ~~~ei~~rL~~l~~~~n~~~~~~a~e~Wr~ekl~~~k~~~~~~~~~n~~~~~ee~~~~~~~~~~ 64 (222)
+..||+++|++= ..=+..+-++++.++-..++.++..-+--.+...-+.+.+|-.-+.+++-.
T Consensus 3 ~~qeiI~k~~~g-~~Ls~~E~~~~~~~i~~g~~~d~qi~afL~al~~kGet~~Ei~~~~~aMr~ 65 (70)
T d2tpta1 3 LAQEIIRKKRDG-HALSDEEIRFFINGIRDNTISEGQIAALAMTIFFHDMTMPERVSLTMAMRD 65 (70)
T ss_dssp CHHHHHHHHHTT-CCCCHHHHHHHHHHHHHTCSCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHCC-CCcCHHHHHHHHHHHHcCCchHHHHHHHHHHHHHcCCCHHHHHHHHHHHHH
Confidence 467999999875 446677888899999999998877634446666667788887777777643
No 3
>d2zjq51 d.45.1.1 (5:52-122) Ribosomal protein L7/12, C-terminal domain {Deinococcus radiodurans [TaxId: 1299]}
Probab=36.51 E-value=8.2 Score=26.45 Aligned_cols=35 Identities=29% Similarity=0.295 Sum_probs=24.2
Q ss_pred HHHHHHhhhcccccCCcchHHHHHHHHHHHhhhhh
Q 027546 33 LEEAKQLSIGRQGINSTILQEEARMLVRVLESDWA 67 (222)
Q Consensus 33 l~~~k~~~~~~~~~n~~~~~ee~~~~~~~~~~~~~ 67 (222)
|+++|.+.-.-..+-.+++.+||+.++..|+..+.
T Consensus 32 LkeAK~lVe~p~~ike~vsKeeAE~~k~~Le~aGA 66 (71)
T d2zjq51 32 LKEAKDMSEKGGVLKEGVAKDEAEKMKAQLEAAGA 66 (71)
T ss_pred HHHHHhhccCchHhhcCCCHHHHHHHHHHHHHcCC
Confidence 56666654433345567899999999999876443
No 4
>d1dd3a2 d.45.1.1 (A:58-128) Ribosomal protein L7/12, C-terminal domain {Thermotoga maritima [TaxId: 2336]}
Probab=32.99 E-value=14 Score=25.20 Aligned_cols=35 Identities=37% Similarity=0.325 Sum_probs=25.6
Q ss_pred HHHHHHhhhccc----ccCCcchHHHHHHHHHHHhhhhh
Q 027546 33 LEEAKQLSIGRQ----GINSTILQEEARMLVRVLESDWA 67 (222)
Q Consensus 33 l~~~k~~~~~~~----~~n~~~~~ee~~~~~~~~~~~~~ 67 (222)
|+++|.+.-.-+ .+-.+++.|||+.++..|+-.++
T Consensus 28 LkEAK~lVe~~p~~~~vike~v~KeeAE~~K~~Le~aGA 66 (71)
T d1dd3a2 28 LKEAKDLVEKAGSPDAVIKSGVSKEEAEEIKKKLEEAGA 66 (71)
T ss_dssp HHHHHHHHTTTTSTTCEEEEEECHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHhcCCchHHHhcCCCHHHHHHHHHHHHHcCC
Confidence 777887544222 35678999999999999986543
No 5
>d2qj2a1 g.10.1.1 (A:36-126) Hepatocyte growth factor {Human (Homo sapiens) [TaxId: 9606]}
Probab=26.50 E-value=23 Score=24.45 Aligned_cols=41 Identities=17% Similarity=0.422 Sum_probs=29.3
Q ss_pred cccCCHHHHHHHHHHhhhhcCCCCCCCceeEECCCCCCCCCCCccCCCCCcccccccC
Q 027546 131 HHRDSAADCCQACIEQAKRAKPGQMKCNIWVYCPAETGCHSPDKYEHKYQECWLKYAE 188 (222)
Q Consensus 131 ~~~~SA~eCC~AC~~~~~~~~~g~~~CNvWV~C~~~~GC~spd~y~~~~geCWLK~~~ 188 (222)
..+.|+++|-+.|.+- +.....|-++.|=. ..+.|+|-...
T Consensus 27 ~~~~s~eeCA~rC~~~----~~~~f~CrSF~y~~-------------~~~~C~Ls~~n 67 (91)
T d2qj2a1 27 KKVNTADQCANRCTRN----KGLPFTCKAFVFDK-------------ARKQCLWFPFN 67 (91)
T ss_dssp EECSCHHHHHHHHHTT----TTCSSCCCEEEEET-------------TTTEEEEESSC
T ss_pred cccCCHHHHHHHHHcc----CCCCceEEeEEEEC-------------CCCeEEEcccc
Confidence 3467999999999962 22245688888743 46899998653
No 6
>d1ctfa_ d.45.1.1 (A:) Ribosomal protein L7/12, C-terminal domain {Escherichia coli [TaxId: 562]}
Probab=24.40 E-value=21 Score=24.07 Aligned_cols=35 Identities=29% Similarity=0.374 Sum_probs=24.3
Q ss_pred HHHHHHhhhc-ccccCCcchHHHHHHHHHHHhhhhh
Q 027546 33 LEEAKQLSIG-RQGINSTILQEEARMLVRVLESDWA 67 (222)
Q Consensus 33 l~~~k~~~~~-~~~~n~~~~~ee~~~~~~~~~~~~~ 67 (222)
|+++|.+.-. -..+-.+++.|||+.++..|+-.+.
T Consensus 28 LkEAK~lVe~~P~~ike~vskeeAE~ik~~Le~aGA 63 (68)
T d1ctfa_ 28 LKEAKDLVESAPAALKEGVSKDDAEALKKALEEAGA 63 (68)
T ss_dssp HHHHHHHHHTCSEEEEEEECHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHcCCHHHHcCCCHHHHHHHHHHHHHcCC
Confidence 5666664433 4455667899999999999876443
No 7
>d3bnea2 b.12.1.1 (A:7-149) Plant lipoxigenase {Soybean (Glycine max), isozyme L1 [TaxId: 3847]}
Probab=23.20 E-value=8.2 Score=29.49 Aligned_cols=26 Identities=19% Similarity=0.245 Sum_probs=16.5
Q ss_pred hhhhHHHhhhccccccceeecccCCC
Q 027546 64 SDWAALSEEIGLWIPTEIIHKEHGDK 89 (222)
Q Consensus 64 ~~~~~~~e~i~~~~~~~~~~~e~~dk 89 (222)
+-.|.+.|=||--+.-+++..+.+|.
T Consensus 21 ~~lD~~~el~Gk~V~lqLVS~~~~d~ 46 (143)
T d3bnea2 21 SAVDNLNAFLGRSVSLQLISATKADA 46 (143)
T ss_dssp ----CGGGGSTTSEEEEEEEEEEECT
T ss_pred chhhhhhHhhCCcEEEEEEEeeccCC
Confidence 33566777788777777888777774
No 8
>d1fpoa2 a.23.1.1 (A:77-171) HSC20 (HSCB), C-terminal oligomerisation domain {Escherichia coli [TaxId: 562]}
Probab=20.25 E-value=1.2e+02 Score=20.24 Aligned_cols=64 Identities=11% Similarity=0.000 Sum_probs=38.4
Q ss_pred HHHHHHhhhcccCCChH---HHHHHHHHHHHHHHHHHHHhhhcccccCCcchHHHHHHHHHHHhhhhhHHHhhhc
Q 027546 3 DEILRRLQSSDVKGNVS---AQREAVESWRREKLEEAKQLSIGRQGINSTILQEEARMLVRVLESDWAALSEEIG 74 (222)
Q Consensus 3 ~ei~~rL~~l~~~~n~~---~~~~a~e~Wr~ekl~~~k~~~~~~~~~n~~~~~ee~~~~~~~~~~~~~~~~e~i~ 74 (222)
+|+=.+|-++.++.+.. .-..-|..-.++...+++..- + .-+.++|..+++.|-+ |..+.++|.
T Consensus 20 ME~RE~lee~~~~~d~~~l~~l~~ei~~~~~~~~~~l~~~~------~-~~d~~~A~~~~~kLkF-~~kl~~ei~ 86 (95)
T d1fpoa2 20 LELREELDEIEQAKDEARLESFIKRVKKMFDTRHQLMVEQL------D-NETWDAAADTCRKLRF-LDKLRSSAE 86 (95)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHHHHHHH------H-TTCHHHHHHHHHHHHH-HHHHHHHHH
T ss_pred HHHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHH------h-hccHHHHHHHHHHhHH-HHHHHHHHH
Confidence 45566777775444421 112234444444444444421 1 1256899999999998 999998876
No 9
>d2trcp_ c.47.1.6 (P:) Phosducin {Rat (Rattus norvegicus) [TaxId: 10116]}
Probab=18.94 E-value=38 Score=25.91 Aligned_cols=20 Identities=15% Similarity=0.219 Sum_probs=15.8
Q ss_pred HHHHHHHHHHHHHHHHhhhc
Q 027546 23 EAVESWRREKLEEAKQLSIG 42 (222)
Q Consensus 23 ~a~e~Wr~ekl~~~k~~~~~ 42 (222)
+.|+.||+.+|+++++....
T Consensus 75 ~~l~~~r~~Rl~el~~~~~~ 94 (217)
T d2trcp_ 75 GCLRKYRRQCMQDMHQKLSF 94 (217)
T ss_dssp HHHHHHHHHHHHHHHHHHCC
T ss_pred HHHHHHHHHHHHHHHHHHhc
Confidence 36899999999999874443
No 10
>d1bwva1 c.1.14.1 (A:150-478) Ribulose 1,5-bisphosphate carboxylase-oxygenase {Galdieria partita [TaxId: 83374]}
Probab=17.75 E-value=43 Score=27.89 Aligned_cols=37 Identities=27% Similarity=0.434 Sum_probs=25.6
Q ss_pred hHHHHHHHHHHHHHH-------------HHHHHHhhhcccccCCcchHHHHHHHHHHHhhhhhHHH
Q 027546 18 VSAQREAVESWRREK-------------LEEAKQLSIGRQGINSTILQEEARMLVRVLESDWAALS 70 (222)
Q Consensus 18 ~~~~~~a~e~Wr~ek-------------l~~~k~~~~~~~~~n~~~~~ee~~~~~~~~~~~~~~~~ 70 (222)
...-|||+|.|-+-+ |++.-+ +...|+.||+. |..+.
T Consensus 267 a~A~RqA~eA~~~g~~~~~~~~~~~~e~l~e~ak---------------~~~eL~~Ale~-Wg~~~ 316 (328)
T d1bwva1 267 ATANRVALEAMILARNENRDYLTEGPEILREAAK---------------TCGALRTALDL-WKDIT 316 (328)
T ss_dssp HHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHH---------------HCHHHHHHHHH-HTTCC
T ss_pred HHHHHHHHHHHHHhcccchhhhhhchHHHHHHHh---------------cCHHHHHHHHH-hcCce
Confidence 466799999996433 555433 44569999998 87553
Done!