Query 027547
Match_columns 222
No_of_seqs 132 out of 1162
Neff 6.4
Searched_HMMs 46136
Date Fri Mar 29 11:33:49 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/027547.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/027547hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF00010 HLH: Helix-loop-helix 99.4 5.3E-13 1.1E-17 90.7 6.7 53 25-77 1-55 (55)
2 cd00083 HLH Helix-loop-helix d 99.4 7.8E-13 1.7E-17 90.6 7.0 57 24-80 3-59 (60)
3 smart00353 HLH helix loop heli 99.3 3.5E-12 7.7E-17 85.6 6.7 52 30-81 1-52 (53)
4 KOG2483 Upstream transcription 98.9 1.2E-08 2.6E-13 88.5 9.2 73 20-92 54-126 (232)
5 KOG1318 Helix loop helix trans 98.7 4.3E-08 9.4E-13 91.0 7.4 60 24-83 232-292 (411)
6 KOG1319 bHLHZip transcription 98.6 1.4E-07 3.1E-12 78.9 7.0 66 26-91 63-132 (229)
7 KOG4304 Transcriptional repres 98.5 3.5E-08 7.5E-13 86.7 2.6 63 20-82 27-94 (250)
8 KOG0561 bHLH transcription fac 98.5 1.3E-07 2.8E-12 84.2 4.0 63 24-87 59-121 (373)
9 KOG4029 Transcription factor H 98.4 6.4E-07 1.4E-11 77.5 6.0 65 21-85 105-170 (228)
10 PLN03217 transcription factor 98.4 1E-06 2.2E-11 64.9 6.0 57 37-93 19-78 (93)
11 cd04895 ACT_ACR_1 ACT domain-c 98.2 2.5E-05 5.4E-10 56.3 9.8 66 130-197 4-69 (72)
12 cd04897 ACT_ACR_3 ACT domain-c 98.1 3.8E-05 8.2E-10 55.7 9.8 66 130-197 4-73 (75)
13 cd04900 ACT_UUR-like_1 ACT dom 98.0 0.00011 2.4E-09 52.2 10.5 67 129-197 3-70 (73)
14 KOG3561 Aryl-hydrocarbon recep 98.0 7.7E-06 1.7E-10 81.7 5.4 59 18-79 13-75 (803)
15 cd04896 ACT_ACR-like_3 ACT dom 97.9 9.9E-05 2.1E-09 53.6 8.9 66 130-198 3-74 (75)
16 cd04928 ACT_TyrKc Uncharacteri 97.9 0.00017 3.7E-09 51.4 9.7 64 129-196 3-67 (68)
17 cd04927 ACT_ACR-like_2 Second 97.9 0.0002 4.4E-09 51.6 9.6 67 129-197 2-72 (76)
18 KOG3960 Myogenic helix-loop-he 97.7 0.00017 3.6E-09 63.1 7.6 70 20-90 113-182 (284)
19 cd04926 ACT_ACR_4 C-terminal 97.7 0.00079 1.7E-08 47.8 9.9 66 129-197 3-68 (72)
20 cd04925 ACT_ACR_2 ACT domain-c 97.6 0.0015 3.2E-08 46.6 10.1 65 130-196 3-72 (74)
21 cd04899 ACT_ACR-UUR-like_2 C-t 97.5 0.002 4.3E-08 44.5 10.0 50 130-180 3-52 (70)
22 PF13740 ACT_6: ACT domain; PD 97.1 0.0056 1.2E-07 43.8 9.2 68 128-200 3-70 (76)
23 cd04873 ACT_UUR-ACR-like ACT d 97.0 0.017 3.8E-07 39.3 10.1 65 130-197 3-67 (70)
24 PF01842 ACT: ACT domain; Int 96.9 0.0086 1.9E-07 40.4 8.1 62 130-195 3-64 (66)
25 KOG2588 Predicted DNA-binding 96.9 0.00056 1.2E-08 69.2 2.7 67 23-91 274-340 (953)
26 cd04893 ACT_GcvR_1 ACT domains 96.8 0.019 4.1E-07 41.2 9.6 69 129-202 3-71 (77)
27 PRK05007 PII uridylyl-transfer 96.7 0.01 2.2E-07 60.9 10.3 79 117-197 796-879 (884)
28 PRK03381 PII uridylyl-transfer 96.7 0.021 4.6E-07 57.7 12.1 80 117-198 588-668 (774)
29 PRK00194 hypothetical protein; 96.7 0.013 2.8E-07 42.9 7.9 76 128-206 4-79 (90)
30 cd04869 ACT_GcvR_2 ACT domains 96.6 0.041 8.8E-07 39.1 9.9 67 130-200 2-74 (81)
31 PRK00275 glnD PII uridylyl-tra 96.6 0.022 4.8E-07 58.5 11.6 80 117-198 802-887 (895)
32 KOG4447 Transcription factor T 96.6 0.0017 3.7E-08 53.0 2.8 56 24-80 77-132 (173)
33 KOG3898 Transcription factor N 96.5 0.0024 5.3E-08 56.4 3.4 57 23-79 70-126 (254)
34 cd04870 ACT_PSP_1 CT domains f 96.5 0.036 7.9E-07 39.3 9.0 67 134-203 5-71 (75)
35 cd04875 ACT_F4HF-DF N-terminal 96.4 0.037 8E-07 39.0 8.9 68 130-198 2-69 (74)
36 cd04872 ACT_1ZPV ACT domain pr 96.4 0.02 4.3E-07 41.9 7.7 75 129-206 3-77 (88)
37 PRK05092 PII uridylyl-transfer 96.4 0.044 9.5E-07 56.5 12.6 82 117-199 831-917 (931)
38 PRK04374 PII uridylyl-transfer 96.4 0.035 7.5E-07 56.9 11.6 78 117-196 784-866 (869)
39 PF13291 ACT_4: ACT domain; PD 96.4 0.023 4.9E-07 40.5 7.4 49 129-178 8-58 (80)
40 PRK03059 PII uridylyl-transfer 96.3 0.031 6.8E-07 57.1 10.7 78 118-196 775-854 (856)
41 PRK01759 glnD PII uridylyl-tra 96.2 0.033 7.1E-07 57.0 10.2 78 117-197 771-850 (854)
42 PRK03381 PII uridylyl-transfer 96.0 0.071 1.5E-06 54.0 11.6 75 118-196 696-772 (774)
43 PRK05007 PII uridylyl-transfer 95.8 0.1 2.2E-06 53.6 11.6 82 116-199 688-775 (884)
44 PRK01759 glnD PII uridylyl-tra 95.7 0.11 2.3E-06 53.3 11.5 82 116-199 664-751 (854)
45 cd04886 ACT_ThrD-II-like C-ter 95.7 0.11 2.5E-06 35.0 8.1 56 136-194 6-66 (73)
46 KOG4395 Transcription factor A 95.6 0.024 5.2E-07 49.9 5.4 58 24-81 173-230 (285)
47 cd04887 ACT_MalLac-Enz ACT_Mal 95.6 0.12 2.6E-06 35.8 8.1 43 136-178 7-50 (74)
48 TIGR01693 UTase_glnD [Protein- 95.6 0.1 2.3E-06 53.2 10.7 82 116-199 655-743 (850)
49 TIGR01693 UTase_glnD [Protein- 95.5 0.1 2.2E-06 53.3 10.5 77 117-196 767-845 (850)
50 KOG3910 Helix loop helix trans 95.4 0.017 3.6E-07 55.2 4.0 60 23-82 524-584 (632)
51 PRK04374 PII uridylyl-transfer 95.3 0.14 3E-06 52.6 10.4 73 126-199 689-762 (869)
52 PRK05092 PII uridylyl-transfer 95.1 0.27 5.9E-06 50.8 12.1 82 116-198 719-806 (931)
53 PRK03059 PII uridylyl-transfer 95.0 0.22 4.8E-06 51.1 10.9 71 126-198 677-751 (856)
54 cd04888 ACT_PheB-BS C-terminal 94.8 0.18 3.8E-06 35.0 7.1 48 130-178 3-51 (76)
55 PRK00275 glnD PII uridylyl-tra 94.8 0.24 5.2E-06 51.0 10.7 72 126-198 703-779 (895)
56 cd04894 ACT_ACR-like_1 ACT dom 94.6 0.25 5.5E-06 34.8 7.2 66 129-195 2-67 (69)
57 cd04880 ACT_AAAH-PDT-like ACT 94.6 0.41 8.9E-06 33.6 8.5 59 136-194 7-66 (75)
58 PRK04435 hypothetical protein; 94.5 0.27 6E-06 39.8 8.3 67 124-193 66-133 (147)
59 COG2844 GlnD UTP:GlnB (protein 94.2 0.25 5.4E-06 50.1 8.9 79 116-197 778-858 (867)
60 PRK13011 formyltetrahydrofolat 93.9 0.52 1.1E-05 42.3 9.7 79 128-208 8-86 (286)
61 cd04877 ACT_TyrR N-terminal AC 93.9 0.28 6.1E-06 34.5 6.4 45 130-178 3-47 (74)
62 cd04905 ACT_CM-PDT C-terminal 93.7 0.74 1.6E-05 32.8 8.5 56 136-194 9-65 (80)
63 cd04876 ACT_RelA-SpoT ACT dom 93.6 0.61 1.3E-05 30.0 7.4 43 136-178 6-49 (71)
64 PRK06027 purU formyltetrahydro 93.0 0.94 2E-05 40.6 9.7 76 128-206 7-84 (286)
65 cd04881 ACT_HSDH-Hom ACT_HSDH_ 92.9 0.55 1.2E-05 32.0 6.6 48 129-177 2-51 (79)
66 cd04878 ACT_AHAS N-terminal AC 92.9 0.94 2E-05 30.2 7.6 41 136-176 8-50 (72)
67 cd04884 ACT_CBS C-terminal ACT 92.7 1.1 2.3E-05 31.1 7.9 41 136-176 7-50 (72)
68 TIGR00655 PurU formyltetrahydr 92.7 0.78 1.7E-05 41.1 8.8 68 130-200 3-73 (280)
69 cd04882 ACT_Bt0572_2 C-termina 92.6 0.89 1.9E-05 30.3 7.2 51 136-194 7-59 (65)
70 cd04874 ACT_Af1403 N-terminal 92.4 1.5 3.2E-05 29.4 8.1 43 130-173 3-46 (72)
71 PRK08577 hypothetical protein; 92.2 1.8 4E-05 34.2 9.5 65 127-194 56-122 (136)
72 COG3830 ACT domain-containing 92.2 0.13 2.8E-06 38.6 2.6 79 130-211 6-84 (90)
73 cd02116 ACT ACT domains are co 92.1 1.2 2.6E-05 27.0 6.8 34 131-165 2-35 (60)
74 cd04908 ACT_Bt0572_1 N-termina 91.8 2.4 5.2E-05 28.9 8.6 51 136-194 9-59 (66)
75 cd04885 ACT_ThrD-I Tandem C-te 91.5 1.3 2.8E-05 30.6 7.1 55 136-194 6-61 (68)
76 cd04883 ACT_AcuB C-terminal AC 91.4 2.9 6.3E-05 28.5 8.8 59 129-194 3-63 (72)
77 cd04879 ACT_3PGDH-like ACT_3PG 91.3 1.9 4E-05 28.5 7.6 53 136-194 7-61 (71)
78 PRK13010 purU formyltetrahydro 90.1 1.8 3.9E-05 39.0 8.4 73 128-202 10-84 (289)
79 PLN02705 beta-amylase 90.0 0.45 9.8E-06 46.9 4.7 28 23-50 82-109 (681)
80 PF13710 ACT_5: ACT domain; PD 89.9 0.82 1.8E-05 31.6 4.8 56 137-196 1-58 (63)
81 COG4492 PheB ACT domain-contai 89.6 2.1 4.6E-05 34.6 7.4 58 136-195 80-138 (150)
82 cd04909 ACT_PDH-BS C-terminal 89.6 3.2 6.8E-05 28.2 7.6 34 130-164 4-37 (69)
83 PRK07334 threonine dehydratase 89.3 2.3 5E-05 39.6 8.8 63 128-194 327-394 (403)
84 cd04903 ACT_LSD C-terminal ACT 88.9 3.6 7.9E-05 27.2 7.5 53 136-194 7-61 (71)
85 cd04889 ACT_PDH-BS-like C-term 88.6 2.8 6E-05 27.4 6.5 40 136-175 6-46 (56)
86 cd04901 ACT_3PGDH C-terminal A 88.2 0.46 9.9E-06 32.2 2.5 54 135-194 6-59 (69)
87 PRK11152 ilvM acetolactate syn 88.0 3.5 7.6E-05 29.8 7.1 57 136-197 11-69 (76)
88 cd04902 ACT_3PGDH-xct C-termin 88.0 2.2 4.7E-05 29.0 5.9 53 136-194 7-61 (73)
89 PRK00227 glnD PII uridylyl-tra 87.7 3.7 8.1E-05 41.3 9.5 72 127-200 546-617 (693)
90 cd04904 ACT_AAAH ACT domain of 87.5 5.1 0.00011 28.2 7.7 55 136-195 8-63 (74)
91 PRK11589 gcvR glycine cleavage 86.8 4.9 0.00011 34.0 8.5 77 128-206 96-176 (190)
92 cd04931 ACT_PAH ACT domain of 86.8 5.9 0.00013 29.4 8.0 43 136-178 22-65 (90)
93 TIGR00119 acolac_sm acetolacta 86.7 3.3 7.2E-05 34.0 7.2 58 136-197 9-68 (157)
94 PRK11895 ilvH acetolactate syn 85.6 4.3 9.3E-05 33.5 7.3 58 136-197 10-69 (161)
95 PRK06737 acetolactate synthase 84.3 4.4 9.6E-05 29.3 6.1 62 130-196 5-68 (76)
96 COG2844 GlnD UTP:GlnB (protein 84.0 6.6 0.00014 40.3 9.1 77 121-199 678-758 (867)
97 cd04929 ACT_TPH ACT domain of 82.7 13 0.00029 26.4 8.1 55 136-195 8-63 (74)
98 CHL00100 ilvH acetohydroxyacid 82.6 7.6 0.00016 32.5 7.7 66 130-200 5-72 (174)
99 KOG4447 Transcription factor T 81.7 2.2 4.7E-05 35.1 3.9 47 30-77 27-73 (173)
100 PRK13562 acetolactate synthase 80.8 6.5 0.00014 29.1 5.9 64 130-197 5-70 (84)
101 KOG3560 Aryl-hydrocarbon recep 80.2 1.6 3.5E-05 42.6 3.2 39 33-74 33-75 (712)
102 PRK10872 relA (p)ppGpp synthet 79.6 8.4 0.00018 39.2 8.1 61 129-193 668-730 (743)
103 PRK11589 gcvR glycine cleavage 79.4 6.3 0.00014 33.3 6.2 66 128-198 9-74 (190)
104 KOG3558 Hypoxia-inducible fact 79.1 1.6 3.5E-05 43.6 2.9 47 26-75 47-97 (768)
105 cd04906 ACT_ThrD-I_1 First of 78.4 18 0.00038 26.0 7.6 55 136-194 9-64 (85)
106 KOG3559 Transcriptional regula 78.4 2.1 4.6E-05 40.5 3.3 44 30-76 6-53 (598)
107 cd04898 ACT_ACR-like_4 ACT dom 77.9 6.9 0.00015 28.5 5.1 63 134-196 6-74 (77)
108 COG3978 Acetolactate synthase 77.0 15 0.00033 27.1 6.7 64 136-204 11-76 (86)
109 cd04922 ACT_AKi-HSDH-ThrA_2 AC 76.5 18 0.00039 23.8 6.8 34 130-163 4-39 (66)
110 PRK08198 threonine dehydratase 76.1 18 0.0004 33.5 8.9 63 128-194 328-395 (404)
111 PRK11092 bifunctional (p)ppGpp 75.7 12 0.00027 37.7 8.1 49 129-178 628-677 (702)
112 PRK06382 threonine dehydratase 75.0 12 0.00027 34.8 7.5 62 129-194 332-398 (406)
113 TIGR00691 spoT_relA (p)ppGpp s 74.9 13 0.00029 37.4 8.0 49 129-178 612-661 (683)
114 TIGR01127 ilvA_1Cterm threonin 73.5 24 0.00053 32.3 8.9 62 129-194 307-373 (380)
115 cd04930 ACT_TH ACT domain of t 71.4 29 0.00063 26.9 7.6 55 136-195 49-104 (115)
116 PRK11899 prephenate dehydratas 69.3 31 0.00068 30.9 8.4 61 136-199 202-263 (279)
117 COG4747 ACT domain-containing 68.6 20 0.00044 28.5 6.1 41 129-170 5-45 (142)
118 PF05088 Bac_GDH: Bacterial NA 68.4 36 0.00079 37.5 9.9 71 127-199 489-564 (1528)
119 cd04919 ACT_AK-Hom3_2 ACT doma 68.4 31 0.00068 22.8 6.8 29 137-165 13-41 (66)
120 COG3074 Uncharacterized protei 67.8 10 0.00022 27.3 3.9 27 66-92 13-39 (79)
121 cd04868 ACT_AK-like ACT domain 67.6 25 0.00054 21.8 5.6 28 137-164 12-39 (60)
122 PRK08178 acetolactate synthase 67.3 35 0.00076 25.9 7.0 63 129-197 10-74 (96)
123 PRK11898 prephenate dehydratas 66.1 34 0.00074 30.5 8.0 58 137-197 206-264 (283)
124 PRK10738 hypothetical protein; 64.5 15 0.00033 29.1 4.9 78 140-217 47-133 (134)
125 cd04916 ACT_AKiii-YclM-BS_2 AC 63.9 38 0.00083 22.1 6.7 27 137-163 13-39 (66)
126 COG0788 PurU Formyltetrahydrof 61.9 50 0.0011 29.8 8.0 71 128-199 8-78 (287)
127 COG0077 PheA Prephenate dehydr 60.2 51 0.0011 29.7 7.9 61 136-199 202-263 (279)
128 PF14689 SPOB_a: Sensor_kinase 60.1 30 0.00065 23.6 5.1 41 34-84 17-57 (62)
129 PRK15422 septal ring assembly 59.1 19 0.0004 26.4 4.0 27 66-92 13-39 (79)
130 KOG3582 Mlx interactors and re 58.9 3.9 8.5E-05 41.1 0.7 67 24-90 650-718 (856)
131 cd04918 ACT_AK1-AT_2 ACT domai 58.4 44 0.00095 22.6 5.8 35 137-171 12-46 (65)
132 cd04924 ACT_AK-Arch_2 ACT doma 58.2 49 0.0011 21.5 6.5 27 137-163 13-39 (66)
133 COG1707 ACT domain-containing 57.9 30 0.00066 29.2 5.6 61 130-194 5-65 (218)
134 PF06005 DUF904: Protein of un 57.4 23 0.00049 25.4 4.2 26 66-91 13-38 (72)
135 PRK10622 pheA bifunctional cho 57.4 64 0.0014 30.2 8.4 68 136-206 305-376 (386)
136 COG2061 ACT-domain-containing 57.3 64 0.0014 26.8 7.3 42 136-177 13-57 (170)
137 PRK08526 threonine dehydratase 56.4 67 0.0015 30.1 8.4 56 136-194 334-394 (403)
138 cd04915 ACT_AK-Ectoine_2 ACT d 52.3 52 0.0011 22.4 5.4 33 138-170 14-46 (66)
139 cd04937 ACT_AKi-DapG-BS_2 ACT 52.1 69 0.0015 21.4 6.5 22 137-158 13-34 (64)
140 cd04892 ACT_AK-like_2 ACT doma 50.9 61 0.0013 20.4 5.9 27 137-163 12-38 (65)
141 PF02344 Myc-LZ: Myc leucine z 50.4 19 0.00042 21.8 2.4 18 32-49 12-29 (32)
142 PF07485 DUF1529: Domain of Un 50.3 83 0.0018 24.8 6.8 52 140-197 68-121 (123)
143 PF03469 XH: XH domain; Inter 47.9 17 0.00037 29.1 2.6 31 185-216 79-109 (132)
144 cd04923 ACT_AK-LysC-DapG-like_ 47.7 72 0.0016 20.3 6.9 26 137-162 12-37 (63)
145 PF02120 Flg_hook: Flagellar h 47.6 71 0.0015 22.4 5.7 47 118-164 28-79 (85)
146 COG0317 SpoT Guanosine polypho 45.1 84 0.0018 32.0 7.4 49 129-178 629-678 (701)
147 PF05687 DUF822: Plant protein 44.4 32 0.00069 28.1 3.6 27 24-50 10-36 (150)
148 cd04891 ACT_AK-LysC-DapG-like_ 43.4 81 0.0017 19.7 6.0 27 136-162 9-35 (61)
149 PF13840 ACT_7: ACT domain ; P 42.9 1.1E+02 0.0023 20.9 5.8 24 137-160 19-42 (65)
150 TIGR01834 PHA_synth_III_E poly 42.9 61 0.0013 29.8 5.6 47 39-92 271-317 (320)
151 smart00338 BRLZ basic region l 41.9 37 0.00079 23.2 3.2 23 70-92 25-47 (65)
152 cd04932 ACT_AKiii-LysC-EC_1 AC 41.3 1.2E+02 0.0027 21.2 7.9 57 136-199 12-68 (75)
153 cd04913 ACT_AKii-LysC-BS-like_ 41.2 1E+02 0.0022 20.2 6.2 33 130-162 4-36 (75)
154 COG2716 GcvR Glycine cleavage 41.1 1.2E+02 0.0026 25.6 6.6 70 127-198 92-165 (176)
155 TIGR02625 YiiL_rotase L-rhamno 38.9 1.2E+02 0.0025 23.1 5.8 75 139-213 21-101 (102)
156 PF00170 bZIP_1: bZIP transcri 38.6 48 0.001 22.5 3.4 23 70-92 25-47 (64)
157 PF09789 DUF2353: Uncharacteri 38.4 1.3E+02 0.0028 27.7 7.0 35 58-92 66-100 (319)
158 PLN02317 arogenate dehydratase 38.2 1.6E+02 0.0035 27.7 7.8 58 136-196 291-363 (382)
159 TIGR01268 Phe4hydrox_tetr phen 36.8 1.7E+02 0.0036 28.2 7.7 43 136-178 24-67 (436)
160 cd04890 ACT_AK-like_1 ACT doma 36.0 1.1E+02 0.0024 19.9 4.9 25 137-161 12-36 (62)
161 PF14992 TMCO5: TMCO5 family 34.1 62 0.0013 29.2 4.2 33 58-90 138-170 (280)
162 PF08826 DMPK_coil: DMPK coile 33.9 96 0.0021 21.5 4.2 52 32-91 8-59 (61)
163 PRK00227 glnD PII uridylyl-tra 33.7 79 0.0017 32.1 5.3 53 136-197 639-691 (693)
164 TIGR02079 THD1 threonine dehyd 33.5 2.2E+02 0.0047 26.7 7.9 56 136-194 333-390 (409)
165 PRK14639 hypothetical protein; 32.5 1.8E+02 0.004 23.2 6.4 53 145-197 3-55 (140)
166 PF10393 Matrilin_ccoil: Trime 32.2 1.1E+02 0.0024 20.2 4.1 31 62-92 14-44 (47)
167 TIGR01270 Trp_5_monoox tryptop 31.8 1.8E+02 0.0039 28.2 7.1 65 136-206 39-105 (464)
168 cd04871 ACT_PSP_2 ACT domains 30.5 52 0.0011 23.7 2.6 60 135-198 6-75 (84)
169 cd04921 ACT_AKi-HSDH-ThrA-like 29.8 1.8E+02 0.004 19.7 6.2 26 137-162 13-38 (80)
170 PF04508 Pox_A_type_inc: Viral 29.7 84 0.0018 17.7 2.7 17 73-89 3-19 (23)
171 PRK14630 hypothetical protein; 29.7 2.4E+02 0.0052 22.6 6.6 64 145-215 14-77 (143)
172 PRK14647 hypothetical protein; 29.4 2.9E+02 0.0064 22.4 7.2 52 146-197 15-66 (159)
173 PF07544 Med9: RNA polymerase 28.6 2.3E+02 0.005 20.5 5.8 48 38-90 31-78 (83)
174 cd04936 ACT_AKii-LysC-BS-like_ 28.4 1.6E+02 0.0035 18.6 7.0 26 137-162 12-37 (63)
175 PF12289 Rotavirus_VP1: Rotavi 28.2 66 0.0014 21.2 2.5 32 31-65 19-51 (52)
176 PF14197 Cep57_CLD_2: Centroso 27.3 1.4E+02 0.0031 21.0 4.4 30 61-90 37-66 (69)
177 cd02018 TPP_PFOR Thiamine pyro 27.3 48 0.001 28.7 2.3 26 183-208 176-203 (237)
178 PRK07431 aspartate kinase; Pro 27.2 4.5E+02 0.0099 25.7 9.3 65 137-212 360-424 (587)
179 PF09849 DUF2076: Uncharacteri 26.7 2.4E+02 0.0053 24.9 6.6 53 37-90 6-74 (247)
180 PRK14637 hypothetical protein; 26.6 3.5E+02 0.0075 21.9 7.1 59 139-197 8-66 (151)
181 PF01545 Cation_efflux: Cation 26.4 3.5E+02 0.0076 23.1 7.6 62 139-200 204-268 (284)
182 PRK08818 prephenate dehydrogen 25.9 4E+02 0.0087 24.8 8.2 41 137-178 305-345 (370)
183 cd04935 ACT_AKiii-DAPDC_1 ACT 25.8 2.2E+02 0.0048 19.9 5.2 25 137-161 13-37 (75)
184 PRK11191 RNase E inhibitor pro 25.7 2.7E+02 0.0059 22.4 6.2 64 137-200 41-105 (138)
185 PRK14640 hypothetical protein; 25.6 3.3E+02 0.0072 22.0 6.8 53 145-197 12-64 (152)
186 cd04933 ACT_AK1-AT_1 ACT domai 25.5 2.6E+02 0.0055 20.0 7.2 25 137-161 13-37 (78)
187 PRK08639 threonine dehydratase 25.4 2.3E+02 0.0049 26.6 6.6 56 136-194 344-401 (420)
188 PRK11790 D-3-phosphoglycerate 24.8 1.4E+02 0.0031 28.0 5.1 60 128-194 339-398 (409)
189 COG0440 IlvH Acetolactate synt 24.6 1.8E+02 0.0039 24.2 5.0 59 137-199 13-73 (163)
190 KOG2663 Acetolactate synthase, 24.3 1.5E+02 0.0031 26.8 4.7 66 130-200 80-147 (309)
191 PTZ00324 glutamate dehydrogena 24.1 5.4E+02 0.012 27.5 9.4 78 116-194 216-299 (1002)
192 PF12344 UvrB: Ultra-violet re 24.0 1.4E+02 0.003 19.4 3.4 33 25-57 8-40 (44)
193 PRK14634 hypothetical protein; 23.9 3.6E+02 0.0079 21.8 6.8 51 147-197 15-67 (155)
194 PF02576 DUF150: Uncharacteris 23.5 1.8E+02 0.0039 22.9 4.8 51 147-197 4-54 (141)
195 cd04912 ACT_AKiii-LysC-EC-like 23.4 2.5E+02 0.0055 19.2 7.8 25 137-161 13-37 (75)
196 PRK00092 ribosome maturation p 23.3 3.4E+02 0.0074 21.7 6.5 52 146-197 14-65 (154)
197 COG0259 PdxH Pyridoxamine-phos 23.3 65 0.0014 27.9 2.3 38 184-222 148-186 (214)
198 PF06189 5-nucleotidase: 5'-nu 23.1 64 0.0014 28.9 2.3 67 127-197 36-104 (264)
199 COG1076 DjlA DnaJ-domain-conta 23.1 50 0.0011 27.2 1.6 58 28-89 115-172 (174)
200 cd04910 ACT_AK-Ectoine_1 ACT d 23.0 2.8E+02 0.0061 19.6 5.7 52 137-196 13-64 (71)
201 KOG4005 Transcription factor X 22.9 5.2E+02 0.011 23.1 7.8 58 25-91 59-117 (292)
202 KOG3582 Mlx interactors and re 22.8 23 0.0005 35.9 -0.6 61 25-88 787-849 (856)
203 PRK15385 magnesium transport p 22.7 5.2E+02 0.011 22.5 8.7 39 127-165 142-181 (225)
204 PRK14646 hypothetical protein; 22.7 4.2E+02 0.0091 21.5 7.1 54 144-197 12-67 (155)
205 TIGR01124 ilvA_2Cterm threonin 22.6 4.1E+02 0.009 25.7 7.9 54 136-194 333-387 (499)
206 PRK12483 threonine dehydratase 22.2 4.8E+02 0.011 25.5 8.3 54 136-194 353-408 (521)
207 PF05088 Bac_GDH: Bacterial NA 21.7 5.1E+02 0.011 29.0 9.0 70 129-199 19-107 (1528)
208 PF03698 UPF0180: Uncharacteri 21.7 2.8E+02 0.006 20.2 5.1 55 140-195 8-78 (80)
209 PRK05771 V-type ATP synthase s 21.5 4E+02 0.0087 26.4 7.8 22 34-55 49-70 (646)
210 PLN02905 beta-amylase 21.0 1.4E+02 0.0029 30.2 4.2 28 24-51 85-112 (702)
211 PF06305 DUF1049: Protein of u 20.9 1E+02 0.0022 20.8 2.6 17 73-89 50-66 (68)
212 PRK09224 threonine dehydratase 20.7 5.7E+02 0.012 24.7 8.4 55 136-194 336-391 (504)
213 PF07716 bZIP_2: Basic region 20.5 1.6E+02 0.0034 19.3 3.3 21 71-91 25-45 (54)
214 COG4747 ACT domain-containing 20.4 4.5E+02 0.0098 21.0 6.8 38 136-174 77-116 (142)
215 PF13224 DUF4032: Domain of un 20.3 1.9E+02 0.0042 24.0 4.5 40 140-179 19-58 (165)
216 PRK14633 hypothetical protein; 20.2 4.6E+02 0.01 21.1 6.9 52 145-197 10-61 (150)
217 PRK09509 fieF ferrous iron eff 20.2 4.1E+02 0.0089 23.4 6.9 62 139-200 212-275 (299)
No 1
>PF00010 HLH: Helix-loop-helix DNA-binding domain only nuclear translocator protein (Arnt).; InterPro: IPR011598 The helix-loop-helix (HLH) DNA-binding domain consists of a closed bundle of four helices in a left-handed twist with two crossover connections. The HLH domain directs dimerisation, and is juxtaposed to basic regions to create a DNA interaction interface surface that recognises specific DNA sequences. Basic region/HLH (bHLH) proteins regulate diverse biological pathways []. bHLH proteins include MyoD [], SREBPs (sterol regulatory element binding proteins) [], and yeast Pho4 (phosphatase system) []. In certain proteins the bHLH domain contains a leucine-zipper motif. The bHLH/leucine zipper (bHLHZip) domain specifies dimerisation within a network of proteins and determines sequence-specific DNA binding []. bHLHZip domains occur in the transcription factors Myc, Mad, Max and Usf [, ]. This entry is bHLHZip, which covers the bHLH domain and the leucine zipper motif, when present.; PDB: 1NLW_A 1NKP_D 1A93_A 2A93_A 1AM9_C 3U5V_A 1A0A_B 2QL2_C 1UKL_C 1AN4_B ....
Probab=99.42 E-value=5.3e-13 Score=90.68 Aligned_cols=53 Identities=32% Similarity=0.572 Sum_probs=48.3
Q ss_pred hhhhhhHHHHHHHHHHHHHHHHHHhcCCCC--CCCCCCChhHHHHHHHHHHHHHH
Q 027547 25 TKIERKTIEKNRRDQMKNLYSTLKSLLPNQ--PSKEELSLPDQVDEAINYIKMLE 77 (222)
Q Consensus 25 ~~~~h~~~ER~RR~~mn~~~~~LrsLlP~~--~~~~k~si~~iL~~ai~YIk~Lq 77 (222)
+|..|+..||+||..||+.|..|+.+||.. ....|.+.++||..||+||++||
T Consensus 1 rR~~h~~~Er~RR~~i~~~~~~L~~llp~~~~~~~~k~~K~~iL~~ai~yI~~Lq 55 (55)
T PF00010_consen 1 RRQKHNERERRRRDRINDCFDELRELLPSCSAGSSRKLSKASILQKAIDYIKQLQ 55 (55)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHCCSSHHCCTTSSSSHHHHHHHHHHHHHHHH
T ss_pred CCchHHHHHHHHHHHHHHHHHHHHHhccchhccccccCCHHHHHHHHHHHHHHhC
Confidence 478999999999999999999999999996 35567888889999999999997
No 2
>cd00083 HLH Helix-loop-helix domain, found in specific DNA- binding proteins that act as transcription factors; 60-100 amino acids long. A DNA-binding basic region is followed by two alpha-helices separated by a variable loop region; HLH forms homo- and heterodimers, dimerization creates a parallel, left-handed, four helix bundle; the basic region N-terminal to the first amphipathic helix mediates high-affinity DNA-binding; there are several groups of HLH proteins: those (E12/E47) which bind specific hexanucleotide sequences such as E-box (5-CANNTG-3) or StRE 5-ATCACCCCAC-3), those lacking the basic domain (Emc, Id) function as negative regulators since they fail to bind DNA, those (hairy, E(spl), deadpan) which repress transcription although they can bind specific hexanucleotide sequences such as N-box (5-CACGc/aG-3), those which have a COE domain (Collier/Olf-1/EBF) which is involved in both in dimerization and in DNA binding, and those which bind pentanucleotides ACGTG or GCGTG and
Probab=99.41 E-value=7.8e-13 Score=90.60 Aligned_cols=57 Identities=30% Similarity=0.577 Sum_probs=50.6
Q ss_pred chhhhhhHHHHHHHHHHHHHHHHHHhcCCCCCCCCCCChhHHHHHHHHHHHHHHHHH
Q 027547 24 PTKIERKTIEKNRRDQMKNLYSTLKSLLPNQPSKEELSLPDQVDEAINYIKMLETKL 80 (222)
Q Consensus 24 ~~~~~h~~~ER~RR~~mn~~~~~LrsLlP~~~~~~k~si~~iL~~ai~YIk~Lq~~v 80 (222)
.++..|+..||+||.+||..|..|+++||......|.+.+.||..|++||+.|+..+
T Consensus 3 ~~r~~~~~~Er~RR~~~n~~~~~L~~llp~~~~~~k~~k~~iL~~a~~yI~~L~~~~ 59 (60)
T cd00083 3 SRREAHNLRERRRRERINDAFDELRSLLPTLPPSKKLSKAEILRKAVDYIKSLQELL 59 (60)
T ss_pred HHHHHHhHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHh
Confidence 478899999999999999999999999999965555666667999999999999876
No 3
>smart00353 HLH helix loop helix domain.
Probab=99.34 E-value=3.5e-12 Score=85.57 Aligned_cols=52 Identities=35% Similarity=0.622 Sum_probs=45.1
Q ss_pred hHHHHHHHHHHHHHHHHHHhcCCCCCCCCCCChhHHHHHHHHHHHHHHHHHH
Q 027547 30 KTIEKNRRDQMKNLYSTLKSLLPNQPSKEELSLPDQVDEAINYIKMLETKLK 81 (222)
Q Consensus 30 ~~~ER~RR~~mn~~~~~LrsLlP~~~~~~k~si~~iL~~ai~YIk~Lq~~v~ 81 (222)
+..||+||.+||.+|..|+++||......|.+.+.||..|++||++|+.+++
T Consensus 1 n~~Er~RR~~~n~~~~~L~~lip~~~~~~k~~k~~iL~~ai~yi~~L~~~~~ 52 (53)
T smart00353 1 NARERRRRRKINEAFDELRSLLPTLPNNKKLSKAEILRLAIEYIKSLQEELQ 52 (53)
T ss_pred CHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHh
Confidence 4689999999999999999999976544556666679999999999999875
No 4
>KOG2483 consensus Upstream transcription factor 2/L-myc-2 protein [Transcription]
Probab=98.86 E-value=1.2e-08 Score=88.53 Aligned_cols=73 Identities=25% Similarity=0.373 Sum_probs=59.6
Q ss_pred CCCCchhhhhhHHHHHHHHHHHHHHHHHHhcCCCCCCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 027547 20 SSSSPTKIERKTIEKNRRDQMKNLYSTLKSLLPNQPSKEELSLPDQVDEAINYIKMLETKLKECKKRKESLQG 92 (222)
Q Consensus 20 ~~~~~~~~~h~~~ER~RR~~mn~~~~~LrsLlP~~~~~~k~si~~iL~~ai~YIk~Lq~~v~~L~~~~~~l~~ 92 (222)
++..++|..||..||+||.+|+++|..|+.+||......+-....||+.|..||+.|+.+.....+..++|..
T Consensus 54 ~~~~~~R~~HN~LEk~RRahlk~~~~~Lk~~vP~~~~~~~~t~lsiL~kA~~~i~~l~~~~~~~~~~~e~l~~ 126 (232)
T KOG2483|consen 54 SSAASSRAHHNALEKRRRAHLKDCFESLKDSVPLLNGETRSTTLSILDKALEHIQSLERKSATQQQDIEDLSR 126 (232)
T ss_pred CCCCcchhhhhhhhHHHHHHHHHHHHHHHHhCCCCCCcchhhhhHhhhhHHHHHHHHHhHHHHHHHHHHHHHH
Confidence 4667899999999999999999999999999999875433325667999999999999877776665555443
No 5
>KOG1318 consensus Helix loop helix transcription factor EB [Transcription]
Probab=98.68 E-value=4.3e-08 Score=90.99 Aligned_cols=60 Identities=18% Similarity=0.361 Sum_probs=50.4
Q ss_pred chhhhhhHHHHHHHHHHHHHHHHHHhcCCCCCC-CCCCChhHHHHHHHHHHHHHHHHHHHH
Q 027547 24 PTKIERKTIEKNRRDQMKNLYSTLKSLLPNQPS-KEELSLPDQVDEAINYIKMLETKLKEC 83 (222)
Q Consensus 24 ~~~~~h~~~ER~RR~~mn~~~~~LrsLlP~~~~-~~k~si~~iL~~ai~YIk~Lq~~v~~L 83 (222)
-+|-.||++||+||..||+....|..|||.... ..|..+..||..+++||++||+..++.
T Consensus 232 ~Krd~HNeVERRRR~nIN~~IkeLg~liP~~~~~~~~~nKgtILk~s~dYIr~Lqq~~q~~ 292 (411)
T KOG1318|consen 232 RKRDNHNEVERRRRENINDRIKELGQLIPKCNSEDMKSNKGTILKASCDYIRELQQTLQRA 292 (411)
T ss_pred HHHhhhhHHHHHHHHHHHHHHHHHHHhCCCCCcchhhcccchhhHHHHHHHHHHHHHHHHH
Confidence 366789999999999999999999999998743 335556666999999999999877643
No 6
>KOG1319 consensus bHLHZip transcription factor BIGMAX [Transcription]
Probab=98.58 E-value=1.4e-07 Score=78.94 Aligned_cols=66 Identities=26% Similarity=0.466 Sum_probs=58.1
Q ss_pred hhhhhHHHHHHHHHHHHHHHHHHhcCCCCCCCC----CCChhHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 027547 26 KIERKTIEKNRRDQMKNLYSTLKSLLPNQPSKE----ELSLPDQVDEAINYIKMLETKLKECKKRKESLQ 91 (222)
Q Consensus 26 ~~~h~~~ER~RR~~mn~~~~~LrsLlP~~~~~~----k~si~~iL~~ai~YIk~Lq~~v~~L~~~~~~l~ 91 (222)
|..|.-.||+||+-||.-|+.|..|||.....+ |.|.+-||..+|+||..|+.++.+-+.+...|.
T Consensus 63 r~aHtqaEqkRRdAIk~GYddLq~LvP~cq~~ds~g~KlskA~ILqksidyi~~L~~~k~kqe~e~s~L~ 132 (229)
T KOG1319|consen 63 RRAHTQAEQKRRDAIKRGYDDLQTLVPTCQQQDSIGQKLSKAIILQKTIDYIQFLHKEKKKQEEEVSTLR 132 (229)
T ss_pred HHHHHHHHHHHHHHHHhchHHHHHhccccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 678999999999999999999999999887665 889899999999999999988877776655544
No 7
>KOG4304 consensus Transcriptional repressors of the hairy/E(spl) family (contains HLH) [Transcription]
Probab=98.55 E-value=3.5e-08 Score=86.73 Aligned_cols=63 Identities=22% Similarity=0.407 Sum_probs=53.9
Q ss_pred CCCCchhhhhhHHHHHHHHHHHHHHHHHHhcCCCCCCC-----CCCChhHHHHHHHHHHHHHHHHHHH
Q 027547 20 SSSSPTKIERKTIEKNRRDQMKNLYSTLKSLLPNQPSK-----EELSLPDQVDEAINYIKMLETKLKE 82 (222)
Q Consensus 20 ~~~~~~~~~h~~~ER~RR~~mn~~~~~LrsLlP~~~~~-----~k~si~~iL~~ai~YIk~Lq~~v~~ 82 (222)
...-.+|..|-..||+||.+||.+++.|+.|||...++ .|.-+++||.-|++|+++|+.....
T Consensus 27 ~~~~~rk~~Kpl~EKkRRaRIN~~L~eLK~Li~e~~~~~~~~~sklEKAdILEltV~hL~~l~~~~~~ 94 (250)
T KOG4304|consen 27 KTRQYRKVRKPLLEKKRRARINRCLDELKDLIPEALKKDGQRHSKLEKADILELTVNHLRQLQRSQQA 94 (250)
T ss_pred hhHHHhhhcchhHHHHHHHHHHHHHHHHHHHHHHHHhhcchhhhhhHHHHHHHHHHHHHHHHhccccc
Confidence 34456888999999999999999999999999988766 4777888899999999999876544
No 8
>KOG0561 consensus bHLH transcription factor [Transcription]
Probab=98.46 E-value=1.3e-07 Score=84.22 Aligned_cols=63 Identities=22% Similarity=0.353 Sum_probs=52.3
Q ss_pred chhhhhhHHHHHHHHHHHHHHHHHHhcCCCCCCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHH
Q 027547 24 PTKIERKTIEKNRRDQMKNLYSTLKSLLPNQPSKEELSLPDQVDEAINYIKMLETKLKECKKRK 87 (222)
Q Consensus 24 ~~~~~h~~~ER~RR~~mn~~~~~LrsLlP~~~~~~k~si~~iL~~ai~YIk~Lq~~v~~L~~~~ 87 (222)
-+|.--|--||+|-+-||.-|..||+|||.... .|.|++.||..+.+||.+|+..--+|-.+.
T Consensus 59 mRReIANsNERRRMQSINAGFqsLr~LlPr~eG-EKLSKAAILQQTa~yI~~Le~~Kt~ll~qn 121 (373)
T KOG0561|consen 59 MRREIANSNERRRMQSINAGFQSLRALLPRKEG-EKLSKAAILQQTADYIHQLEGHKTELLPQN 121 (373)
T ss_pred HHHHhhcchHHHHHHhhhHHHHHHHHhcCcccc-hhhHHHHHHHHHHHHHHHHHhccccccccc
Confidence 355667888999999999999999999998764 578888889999999999987665554433
No 9
>KOG4029 consensus Transcription factor HAND2/Transcription factor TAL1/TAL2/LYL1 [Transcription]
Probab=98.37 E-value=6.4e-07 Score=77.48 Aligned_cols=65 Identities=25% Similarity=0.454 Sum_probs=58.1
Q ss_pred CCCchhhhhhHHHHHHHHHHHHHHHHHHhcCCCCCC-CCCCChhHHHHHHHHHHHHHHHHHHHHHH
Q 027547 21 SSSPTKIERKTIEKNRRDQMKNLYSTLKSLLPNQPS-KEELSLPDQVDEAINYIKMLETKLKECKK 85 (222)
Q Consensus 21 ~~~~~~~~h~~~ER~RR~~mn~~~~~LrsLlP~~~~-~~k~si~~iL~~ai~YIk~Lq~~v~~L~~ 85 (222)
.....+..+|..||+|-+.+|..|..||.+||.... ..|.|+.++|..||.||..|++-++.-+.
T Consensus 105 ~~~~~~~~~n~RER~Rv~~vN~~f~~Lr~~lP~~~~~~kklSKveTLr~A~~YI~~L~~lL~~~~~ 170 (228)
T KOG4029|consen 105 QTSAQRQARNARERQRVQSVNSAFAELRALLPTEPPQSKKLSKVETLRLATSYIRYLTKLLATQEA 170 (228)
T ss_pred chhhhhhhhhhhhhhcccchhhhhHHHHhcCCCCCCcccccCcccchHHHHHHHHHHHHHhccccc
Confidence 345678889999999999999999999999999987 88999999999999999999987766554
No 10
>PLN03217 transcription factor ATBS1; Provisional
Probab=98.37 E-value=1e-06 Score=64.87 Aligned_cols=57 Identities=25% Similarity=0.456 Sum_probs=50.9
Q ss_pred HHHHHHHHHHHHhcCCCCCC---CCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Q 027547 37 RDQMKNLYSTLKSLLPNQPS---KEELSLPDQVDEAINYIKMLETKLKECKKRKESLQGR 93 (222)
Q Consensus 37 R~~mn~~~~~LrsLlP~~~~---~~k~si~~iL~~ai~YIk~Lq~~v~~L~~~~~~l~~~ 93 (222)
-++|+++.+.|+.|+|.... .+|+|.+.+|.+++.||+.|+++|.+|.++..+|...
T Consensus 19 ddqi~dLvsKLq~llPe~r~~r~s~k~saskvLqEtC~YIrsLhrEvDdLSerLs~LL~t 78 (93)
T PLN03217 19 EDQINDLIIKLQQLLPELRDSRRSDKVSAARVLQDTCNYIRNLHREVDDLSERLSELLAN 78 (93)
T ss_pred HHHHHHHHHHHHHHChHHHhhhccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 47899999999999998643 4799999999999999999999999999999888753
No 11
>cd04895 ACT_ACR_1 ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). This CD includes the N-terminal ACT domain, of a novel type of ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). ACR proteins, found only in Arabidopsis and Oryza, as yet, are proposed to function as novel regulatory or sensor proteins in plants. Nine ACR gene products have been described (ACR1-8 in Arabidopsis and OsARC1-9 in Oryza) and are represented in this CD. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=98.19 E-value=2.5e-05 Score=56.25 Aligned_cols=66 Identities=17% Similarity=0.137 Sum_probs=53.1
Q ss_pred EEEEEcCCCCChHHHHHHHHHhCCceEEEEEEEEeCCEEEEEEEEEeccCccccCHHHHHHHHHHHHh
Q 027547 130 VILTSGVDDQFIFYEVIRILHQDGAEILNAKFSVVGNTIFHVIHAEIRDSMFGFGAAKISERLKGFVS 197 (222)
Q Consensus 130 V~v~~~~~~~~~L~~vl~~Le~lgL~V~~a~~s~~~~~~~~ti~~kv~~~~~~~~~~~l~~aL~~~I~ 197 (222)
|.|.+ .++||+|.+|.++|.++||+|..|.+++.|+++..+|.+.-.++. .++-....+.|++.+.
T Consensus 4 iev~a-~DRpGLL~~i~~~l~~~gl~I~~AkIsT~Gerv~DvFyV~d~~g~-kl~d~~~~~~l~~~L~ 69 (72)
T cd04895 4 VKVDS-ARKPGILLEAVQVLTDLDLCITKAYISSDGGWFMDVFHVTDQLGN-KLTDDSLIAYIEKSLG 69 (72)
T ss_pred EEEEE-CCcCCHHHHHHHHHHHCCcEEEEEEEeecCCeEEEEEEEECCCCC-CCCCHHHHHHHHHHhc
Confidence 45555 589999999999999999999999999999999999999866554 4444455566666554
No 12
>cd04897 ACT_ACR_3 ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). This CD includes the third ACT domain, of a novel type of ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). ACR proteins, found only in Arabidopsis and Oryza, as yet, are proposed to function as novel regulatory or sensor proteins in plants. Nine ACR gene products have been described (ACR1-8 in Arabidopsis and OsARC1-9 in Oryza) and are represented in this CD. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=98.13 E-value=3.8e-05 Score=55.75 Aligned_cols=66 Identities=12% Similarity=0.218 Sum_probs=54.3
Q ss_pred EEEEEcCCCCChHHHHHHHHHhCCceEEEEEEEEeCCEEEEEEEEEeccCccccC----HHHHHHHHHHHHh
Q 027547 130 VILTSGVDDQFIFYEVIRILHQDGAEILNAKFSVVGNTIFHVIHAEIRDSMFGFG----AAKISERLKGFVS 197 (222)
Q Consensus 130 V~v~~~~~~~~~L~~vl~~Le~lgL~V~~a~~s~~~~~~~~ti~~kv~~~~~~~~----~~~l~~aL~~~I~ 197 (222)
|.|.| +++||+|.+|..+|-++|++|.+|.+++.++++.-+|.+.-.++. .+. .+.|.++|.+++.
T Consensus 4 veV~~-~DRpGLL~~i~~~l~~~~l~I~~A~I~T~gera~D~FyV~d~~g~-kl~~~~~~~~l~~~L~~al~ 73 (75)
T cd04897 4 VTVQC-RDRPKLLFDVVCTLTDMDYVVFHATIDTDGDDAHQEYYIRHKDGR-TLSTEGERQRVIKCLEAAIE 73 (75)
T ss_pred EEEEe-CCcCcHHHHHHHHHHhCCeEEEEEEEeecCceEEEEEEEEcCCCC-ccCCHHHHHHHHHHHHHHHh
Confidence 55556 599999999999999999999999999999999999999877765 333 3466677776665
No 13
>cd04900 ACT_UUR-like_1 ACT domain family, ACT_UUR-like_1, includes the first of two C-terminal ACT domains of the bacterial signal-transducing uridylyltransferase /uridylyl-removing (UUR) enzyme, GlnD and related domains. This ACT domain family, ACT_UUR-like_1, includes the first of two C-terminal ACT domains of the bacterial signal-transducing uridylyltransferase /uridylyl-removing (UUR) enzyme, GlnD; including those enzymes similar to the GlnD found in enteric Escherichia coli and those found in photosynthetic, nitrogen-fixing bacterium Rhodospirillum rubrum. Also included in this CD is the N-terminal ACT domain of a yet characterized Arabidopsis/Oryza predicted tyrosine kinase. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=98.02 E-value=0.00011 Score=52.17 Aligned_cols=67 Identities=19% Similarity=0.226 Sum_probs=50.0
Q ss_pred EEEEEEcCCCCChHHHHHHHHHhCCceEEEEEEEEe-CCEEEEEEEEEeccCccccCHHHHHHHHHHHHh
Q 027547 129 EVILTSGVDDQFIFYEVIRILHQDGAEILNAKFSVV-GNTIFHVIHAEIRDSMFGFGAAKISERLKGFVS 197 (222)
Q Consensus 129 ~V~v~~~~~~~~~L~~vl~~Le~lgL~V~~a~~s~~-~~~~~~ti~~kv~~~~~~~~~~~l~~aL~~~I~ 197 (222)
+|.|.| .++||+|+++..+|..+|++|++|.+.+. ++.++.+|.+.-.++. .....+..++|++.|.
T Consensus 3 ~i~v~~-~Dr~gLl~~i~~~l~~~~l~I~~A~i~T~~~~~v~D~F~v~~~~~~-~~~~~~~~~~l~~~L~ 70 (73)
T cd04900 3 EVFIYT-PDRPGLFARIAGALDQLGLNILDARIFTTRDGYALDTFVVLDPDGE-PIGERERLARIREALE 70 (73)
T ss_pred EEEEEe-cCCCCHHHHHHHHHHHCCCCeEEeEEEEeCCCeEEEEEEEECCCCC-CCChHHHHHHHHHHHH
Confidence 566666 58999999999999999999999999877 6899999998744433 3333444445555443
No 14
>KOG3561 consensus Aryl-hydrocarbon receptor nuclear translocator [Transcription]
Probab=97.99 E-value=7.7e-06 Score=81.71 Aligned_cols=59 Identities=24% Similarity=0.483 Sum_probs=49.7
Q ss_pred CCCCCCchhhhhhHHHHHHHHHHHHHHHHHHhcCCCCC----CCCCCChhHHHHHHHHHHHHHHHH
Q 027547 18 QCSSSSPTKIERKTIEKNRRDQMKNLYSTLKSLLPNQP----SKEELSLPDQVDEAINYIKMLETK 79 (222)
Q Consensus 18 ~~~~~~~~~~~h~~~ER~RR~~mn~~~~~LrsLlP~~~----~~~k~si~~iL~~ai~YIk~Lq~~ 79 (222)
+.+.....|..|+.+||+||++||..+..|.+|||... |+||..| |..||.+|+.+++.
T Consensus 13 ~d~k~r~~Re~~~~~EKrRRdq~N~yI~ELs~Mvp~~~~~~RK~DK~tV---Lr~aV~~lr~~k~~ 75 (803)
T KOG3561|consen 13 SDSKDRKKRENRSEIEKRRRDQMNKYIEELSEMVPTNASLSRKPDKLTV---LRMAVDHLRLIKEQ 75 (803)
T ss_pred ccchhhhccccchhHHHHHHHHHHHHHHHHHHhhhcchhcccCchHHHH---HHHHHHHHHHHhhh
Confidence 33444456899999999999999999999999999875 5566655 99999999999884
No 15
>cd04896 ACT_ACR-like_3 ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). This CD includes the third ACT domain, of a novel type of ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). ACR proteins, found only in Arabidopsis and Oryza, as yet, are proposed to function as novel regulatory or sensor proteins in plants. Nine ACR gene products (ACR1-8 in Arabidopsis and OsARC1-9 in Oryza) have been described, however, the ACR-like sequences in this CD are distinct from those characterized. This CD includes the Oryza sativa ACR-like protein (Os05g0113000) encoded on chromosome 5 and the Arabidopsis thaliana predicted gene product, At2g39570. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=97.93 E-value=9.9e-05 Score=53.57 Aligned_cols=66 Identities=20% Similarity=0.307 Sum_probs=52.2
Q ss_pred EEEEEcCCCCChHHHHHHHHHhCCceEEEEEEE--EeCCEEEEEEEEEeccCcccc-C---HHHHHHHHHHHHhc
Q 027547 130 VILTSGVDDQFIFYEVIRILHQDGAEILNAKFS--VVGNTIFHVIHAEIRDSMFGF-G---AAKISERLKGFVSG 198 (222)
Q Consensus 130 V~v~~~~~~~~~L~~vl~~Le~lgL~V~~a~~s--~~~~~~~~ti~~kv~~~~~~~-~---~~~l~~aL~~~I~~ 198 (222)
+.|.| .++||+|++|.++|..+|++|.+|.++ +.|+++.-+|.+ -.++. .+ + ...|+++|.+++.+
T Consensus 3 lev~a-~DRpGLL~~i~~~l~~~~l~i~~AkI~~~T~Gerv~D~Fyv-~~~g~-kl~d~~~~~~L~~~L~~~l~~ 74 (75)
T cd04896 3 LQIRC-VDQKGLLYDILRTSKDCNIQISYGRFSSKVKGYREVDLFIV-QSDGK-KIMDPKKQAALCARLREEMVC 74 (75)
T ss_pred EEEEe-CCcccHHHHHHHHHHHCCeEEEEEEEecCcccCEEEEEEEE-eCCCC-ccCCHHHHHHHHHHHHHHhcC
Confidence 45556 589999999999999999999999999 999999999988 33333 23 2 45677777777653
No 16
>cd04928 ACT_TyrKc Uncharacterized, N-terminal ACT domain of an Arabidopsis/Oryza predicted tyrosine kinase and other related ACT domains. This CD includes a novel, yet uncharacterized, N-terminal ACT domain of an Arabidopsis/Oryza predicted tyrosine kinase and other related ACT domains. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=97.92 E-value=0.00017 Score=51.40 Aligned_cols=64 Identities=13% Similarity=0.098 Sum_probs=54.4
Q ss_pred EEEEEEcCCCCChHHHHHHHHHhCCceEEEEEEEE-eCCEEEEEEEEEeccCccccCHHHHHHHHHHHH
Q 027547 129 EVILTSGVDDQFIFYEVIRILHQDGAEILNAKFSV-VGNTIFHVIHAEIRDSMFGFGAAKISERLKGFV 196 (222)
Q Consensus 129 ~V~v~~~~~~~~~L~~vl~~Le~lgL~V~~a~~s~-~~~~~~~ti~~kv~~~~~~~~~~~l~~aL~~~I 196 (222)
+|.|.+ +++|++|.++..+|..+||+|+.|.+.+ .++.++.+|.+.-.+ +-+...+.++|++++
T Consensus 3 eI~V~~-~Dr~gLFa~iag~L~~~~LnI~~A~i~tt~dG~~LDtF~V~d~~---~~~~~~~~~~~~~~~ 67 (68)
T cd04928 3 EITFAA-GDKPKLLSQLSSLLGDLGLNIAEAHAFSTDDGLALDIFVVTGWK---RGETAALGHALQKEI 67 (68)
T ss_pred EEEEEE-CCCcchHHHHHHHHHHCCCceEEEEEEEcCCCeEEEEEEEecCC---ccchHHHHHHHHHhh
Confidence 566666 5899999999999999999999999885 578899999988655 348889999998876
No 17
>cd04927 ACT_ACR-like_2 Second ACT domain, of a novel type of ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). This CD includes the second ACT domain, of a novel type of ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). ACR proteins, found only in Arabidopsis and Oryza, as yet, are proposed to function as novel regulatory or sensor proteins in plants. Nine ACR gene products (ACR1-8 in Arabidopsis and OsARC1-9 in Oryza) have been described, however, the ACR-like sequences in this CD are distinct from those characterized. This CD includes the Oryza sativa ACR-like protein (Os05g0113000) encoded on chromosome 5 and the Arabidopsis thaliana predicted gene product, At2g39570. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=97.86 E-value=0.0002 Score=51.59 Aligned_cols=67 Identities=12% Similarity=0.110 Sum_probs=49.7
Q ss_pred EEEEEEcCCCCChHHHHHHHHHhCCceEEEEEEEE-eCCEEEEEEEEEeccCccccC---HHHHHHHHHHHHh
Q 027547 129 EVILTSGVDDQFIFYEVIRILHQDGAEILNAKFSV-VGNTIFHVIHAEIRDSMFGFG---AAKISERLKGFVS 197 (222)
Q Consensus 129 ~V~v~~~~~~~~~L~~vl~~Le~lgL~V~~a~~s~-~~~~~~~ti~~kv~~~~~~~~---~~~l~~aL~~~I~ 197 (222)
.+.|.| .++||+|.++..+|..+|++|++|.+++ .++.++.+|.+.-.++. ..+ ...+.++|.+++.
T Consensus 2 ~~ei~~-~Dr~gLfa~i~~~l~~~~l~I~~A~I~Tt~~~~v~D~F~V~d~~~~-~~~~~~~~~l~~~L~~~L~ 72 (76)
T cd04927 2 LLKLFC-SDRKGLLHDVTEVLYELELTIERVKVSTTPDGRVLDLFFITDAREL-LHTKKRREETYDYLRAVLG 72 (76)
T ss_pred EEEEEE-CCCCCHHHHHHHHHHHCCCeEEEEEEEECCCCEEEEEEEEeCCCCC-CCCHHHHHHHHHHHHHHHc
Confidence 356666 5899999999999999999999999996 89999999998643322 112 2345555555554
No 18
>KOG3960 consensus Myogenic helix-loop-helix transcription factor [Transcription]
Probab=97.67 E-value=0.00017 Score=63.14 Aligned_cols=70 Identities=23% Similarity=0.340 Sum_probs=56.4
Q ss_pred CCCCchhhhhhHHHHHHHHHHHHHHHHHHhcCCCCCCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 027547 20 SSSSPTKIERKTIEKNRRDQMKNLYSTLKSLLPNQPSKEELSLPDQVDEAINYIKMLETKLKECKKRKESL 90 (222)
Q Consensus 20 ~~~~~~~~~h~~~ER~RR~~mn~~~~~LrsLlP~~~~~~k~si~~iL~~ai~YIk~Lq~~v~~L~~~~~~l 90 (222)
+.+..+|+.--+.||+|=+++|+.|.+|+.-.-.. +..+..+.+||..||.||..||.-++++.+....+
T Consensus 113 s~svDRRKAATMRERRRLkKVNEAFE~LKRrT~~N-PNQRLPKVEILRsAI~YIE~Lq~LL~~~~~~~~~~ 182 (284)
T KOG3960|consen 113 STSVDRRKAATMRERRRLKKVNEAFETLKRRTSSN-PNQRLPKVEILRSAIRYIERLQALLQEQDQAEKGL 182 (284)
T ss_pred ccchhHHHHHHHHHHHHHHHHHHHHHHHHhhcCCC-ccccccHHHHHHHHHHHHHHHHHHHHHhhccchhh
Confidence 45567899999999999999999999998755322 23456677789999999999999999988765544
No 19
>cd04926 ACT_ACR_4 C-terminal ACT domain, of a novel type of ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). This CD includes the C-terminal ACT domain, of a novel type of ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). ACR proteins, found only in Arabidopsis and Oryza, as yet, are proposed to function as novel regulatory or sensor proteins in plants. Nine ACR gene products have been described (ACR1-8 in Arabidopsis and OsARC1-9 in Oryza) and are represented in this CD. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=97.66 E-value=0.00079 Score=47.76 Aligned_cols=66 Identities=17% Similarity=0.248 Sum_probs=50.7
Q ss_pred EEEEEEcCCCCChHHHHHHHHHhCCceEEEEEEEEeCCEEEEEEEEEeccCccccCHHHHHHHHHHHHh
Q 027547 129 EVILTSGVDDQFIFYEVIRILHQDGAEILNAKFSVVGNTIFHVIHAEIRDSMFGFGAAKISERLKGFVS 197 (222)
Q Consensus 129 ~V~v~~~~~~~~~L~~vl~~Le~lgL~V~~a~~s~~~~~~~~ti~~kv~~~~~~~~~~~l~~aL~~~I~ 197 (222)
.|.|.+ .+++|+|.+|..+|.++|++|++|.+.+.++..+.+|++.-.++. ..+. +..++|++.|.
T Consensus 3 ri~V~~-~D~~Gll~~i~~~l~~~~lnI~sa~i~t~~~~~~d~f~v~~~~~~-~~~~-~~~~~l~~~l~ 68 (72)
T cd04926 3 RLELRT-EDRVGLLSDVTRVFRENGLTVTRAEISTQGDMAVNVFYVTDANGN-PVDP-KTIEAVRQEIG 68 (72)
T ss_pred EEEEEE-CCccCHHHHHHHHHHHCCcEEEEEEEecCCCeEEEEEEEECCCCC-cCCH-HHHHHHHHHhc
Confidence 456655 589999999999999999999999999888888888888644433 3333 45566777665
No 20
>cd04925 ACT_ACR_2 ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). This CD includes the second ACT domain, of a novel type of ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). ACR proteins, found only in Arabidopsis and Oryza, as yet, are proposed to function as novel regulatory or sensor proteins in plants. Nine ACR gene products have been described (ACR1-8 in Arabidopsis and OsARC1-9 in Oryza) and are represented in this CD. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=97.55 E-value=0.0015 Score=46.64 Aligned_cols=65 Identities=20% Similarity=0.242 Sum_probs=49.1
Q ss_pred EEEEEcCCCCChHHHHHHHHHhCCceEEEEEEEEeCCEEEEEEEEEecc-Ccccc-C---HHHHHHHHHHHH
Q 027547 130 VILTSGVDDQFIFYEVIRILHQDGAEILNAKFSVVGNTIFHVIHAEIRD-SMFGF-G---AAKISERLKGFV 196 (222)
Q Consensus 130 V~v~~~~~~~~~L~~vl~~Le~lgL~V~~a~~s~~~~~~~~ti~~kv~~-~~~~~-~---~~~l~~aL~~~I 196 (222)
|.|.+ .++||+|.+|..+|..+|++|+.|.+++.++.++.+|.+.-.+ +. .. + .+.|.++|.+++
T Consensus 3 ~~v~~-~Dr~gLl~~i~~~l~~~~lnI~~A~i~t~~~~~~d~f~V~d~~~~~-~~~~~~~~~~i~~~L~~~l 72 (74)
T cd04925 3 IELTG-TDRPGLLSEVFAVLADLHCNVVEARAWTHNGRLACVIYVRDEETGA-PIDDPIRLASIEDRLDNVL 72 (74)
T ss_pred EEEEE-CCCCCHHHHHHHHHHHCCCcEEEEEEEEECCEEEEEEEEEcCcCCC-CCCCHHHHHHHHHHHHHHh
Confidence 44545 5899999999999999999999999999999999999886433 22 22 2 345555555554
No 21
>cd04899 ACT_ACR-UUR-like_2 C-terminal ACT domains of the bacterial signal-transducing uridylyltransferase /uridylyl-removing (UUR) enzyme, GlnD and related domains. This ACT domain family, ACT_ACR-UUR-like_2, includes the second of two C-terminal ACT domains of the bacterial signal-transducing uridylyltransferase /uridylyl-removing (UUR) enzyme, GlnD; including those enzymes similar to the GlnD found in enteric Escherichia coli and those found in photosynthetic, nitrogen-fixing bacterium Rhodospirillum rubrum. Also included in this CD are the second and fourth ACT domains of a novel protein composed almost entirely of ACT domain repeats, the ACR protein. These ACR proteins, found in Arabidopsis and Oryza, are proposed to function as novel regulatory or sensor proteins in plants. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=97.50 E-value=0.002 Score=44.50 Aligned_cols=50 Identities=26% Similarity=0.321 Sum_probs=43.1
Q ss_pred EEEEEcCCCCChHHHHHHHHHhCCceEEEEEEEEeCCEEEEEEEEEeccCc
Q 027547 130 VILTSGVDDQFIFYEVIRILHQDGAEILNAKFSVVGNTIFHVIHAEIRDSM 180 (222)
Q Consensus 130 V~v~~~~~~~~~L~~vl~~Le~lgL~V~~a~~s~~~~~~~~ti~~kv~~~~ 180 (222)
+.|.+ .+++|+|.+|+.+|.++++.|.++.+.+.++.++.+|++...++.
T Consensus 3 l~v~~-~d~~gll~~i~~~l~~~~~~I~~~~~~~~~~~~~~~f~i~~~~~~ 52 (70)
T cd04899 3 LELTA-LDRPGLLADVTRVLAELGLNIHSAKIATLGERAEDVFYVTDADGQ 52 (70)
T ss_pred EEEEE-cCCccHHHHHHHHHHHCCCeEEEEEEEecCCEEEEEEEEECCCCC
Confidence 44545 589999999999999999999999999888888899998876655
No 22
>PF13740 ACT_6: ACT domain; PDB: 1ZPV_A 3P96_A 1U8S_A.
Probab=97.14 E-value=0.0056 Score=43.79 Aligned_cols=68 Identities=16% Similarity=0.263 Sum_probs=54.1
Q ss_pred eEEEEEEcCCCCChHHHHHHHHHhCCceEEEEEEEEeCCEEEEEEEEEeccCccccCHHHHHHHHHHHHhccc
Q 027547 128 LEVILTSGVDDQFIFYEVIRILHQDGAEILNAKFSVVGNTIFHVIHAEIRDSMFGFGAAKISERLKGFVSGCA 200 (222)
Q Consensus 128 v~V~v~~~~~~~~~L~~vl~~Le~lgL~V~~a~~s~~~~~~~~ti~~kv~~~~~~~~~~~l~~aL~~~I~~~~ 200 (222)
+-|++.+ +++||++..|..+|.++|.++..++.++.++.+...+.+.+.. .+.++++.+|.++-...-
T Consensus 3 ~vItv~G-~DrpGiv~~v~~~l~~~g~ni~d~~~~~~~~~f~~~~~v~~~~----~~~~~l~~~L~~l~~~~~ 70 (76)
T PF13740_consen 3 LVITVVG-PDRPGIVAAVTGVLAEHGCNIEDSRQAVLGGRFTLIMLVSIPE----DSLERLESALEELAEELG 70 (76)
T ss_dssp EEEEEEE-E--TTHHHHHHHHHHCTT-EEEEEEEEEETTEEEEEEEEEESH----HHHHHHHHHHHHHHHHTT
T ss_pred EEEEEEe-cCCCcHHHHHHHHHHHCCCcEEEEEEEEEcCeEEEEEEEEeCc----ccHHHHHHHHHHHHHHCC
Confidence 4566655 5899999999999999999999999999999988888888763 367888888888766543
No 23
>cd04873 ACT_UUR-ACR-like ACT domains of the bacterial signal-transducing uridylyltransferase /uridylyl-removing (UUR) enzyme, GlnD. This ACT domain family, ACT_UUR_ACR-like, includes the two C-terminal ACT domains of the bacterial signal-transducing uridylyltransferase /uridylyl-removing (UUR) enzyme, GlnD; including those enzymes similar to the GlnD found in enteric Escherichia coli and those found in photosynthetic, nitrogen-fixing bacterium Rhodospirillum rubrum. Also included in this CD are the four ACT domains of a novel protein composed almost entirely of ACT domain repeats (the ACR protein) and like proteins. These ACR proteins, found in Arabidopsis and Oryza, are proposed to function as novel regulatory or sensor proteins in plants. This CD also includes the first of the two ACT domains that comprise the Glycine Cleavage System Transcriptional Repressor (GcvR) protein and related domains, as well as, the N-terminal ACT domain of a yet characterized Arabidopsis/Oryza predicted t
Probab=96.97 E-value=0.017 Score=39.31 Aligned_cols=65 Identities=20% Similarity=0.259 Sum_probs=48.2
Q ss_pred EEEEEcCCCCChHHHHHHHHHhCCceEEEEEEEEeCCEEEEEEEEEeccCccccCHHHHHHHHHHHHh
Q 027547 130 VILTSGVDDQFIFYEVIRILHQDGAEILNAKFSVVGNTIFHVIHAEIRDSMFGFGAAKISERLKGFVS 197 (222)
Q Consensus 130 V~v~~~~~~~~~L~~vl~~Le~lgL~V~~a~~s~~~~~~~~ti~~kv~~~~~~~~~~~l~~aL~~~I~ 197 (222)
|.|.| .+++|+|.+++.+|.++++.|.++.+.+.++.....|++.-.++. .. ..+-.+.|++.+.
T Consensus 3 l~i~~-~d~~g~l~~i~~~l~~~~~~I~~~~~~~~~~~~~~~~~v~~~~~~-~~-~~~~~~~l~~~l~ 67 (70)
T cd04873 3 VEVYA-PDRPGLLADITRVLADLGLNIHDARISTTGERALDVFYVTDSDGR-PL-DPERIARLEEALE 67 (70)
T ss_pred EEEEe-CCCCCHHHHHHHHHHHCCCeEEEEEEeecCCEEEEEEEEECCCCC-cC-CHHHHHHHHHHHH
Confidence 55555 588999999999999999999999999887777778887765544 22 3344445555553
No 24
>PF01842 ACT: ACT domain; InterPro: IPR002912 The ACT domain is found in a variety of contexts and is proposed to be a conserved regulatory binding fold. ACT domains are linked to a wide range of metabolic enzymes that are regulated by amino acid concentration. The archetypical ACT domain is the C-terminal regulatory domain of 3-phosphoglycerate dehydrogenase (3PGDH), which folds with a ferredoxin-like topology. A pair of ACT domains form an eight-stranded antiparallel sheet with two molecules of allosteric inhibitor serine bound in the interface. Biochemical exploration of a few other proteins containing ACT domains supports the suggestions that these domains contain the archetypical ACT structure [].; GO: 0016597 amino acid binding, 0008152 metabolic process; PDB: 3L76_B 2F06_B 3NRB_C 1Y7P_C 2QMX_A 2DT9_A 2ZHO_D 3K5P_A 3TVI_K 3C1M_C ....
Probab=96.93 E-value=0.0086 Score=40.36 Aligned_cols=62 Identities=23% Similarity=0.164 Sum_probs=44.7
Q ss_pred EEEEEcCCCCChHHHHHHHHHhCCceEEEEEEEEeCCEEEEEEEEEeccCccccCHHHHHHHHHHH
Q 027547 130 VILTSGVDDQFIFYEVIRILHQDGAEILNAKFSVVGNTIFHVIHAEIRDSMFGFGAAKISERLKGF 195 (222)
Q Consensus 130 V~v~~~~~~~~~L~~vl~~Le~lgL~V~~a~~s~~~~~~~~ti~~kv~~~~~~~~~~~l~~aL~~~ 195 (222)
|.+.| .++||.|.+|.++|-++|+.|.++......+...+.+.+...+ ......+.++|+++
T Consensus 3 v~v~~-~drpG~l~~v~~~la~~~inI~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~l~~~ 64 (66)
T PF01842_consen 3 VRVIV-PDRPGILADVTEILADHGINIDSISQSSDKDGVGIVFIVIVVD---EEDLEKLLEELEAL 64 (66)
T ss_dssp EEEEE-ETSTTHHHHHHHHHHHTTEEEEEEEEEEESSTTEEEEEEEEEE---GHGHHHHHHHHHHH
T ss_pred EEEEc-CCCCCHHHHHHHHHHHcCCCHHHeEEEecCCCceEEEEEEECC---CCCHHHHHHHHHcc
Confidence 55556 4899999999999999999999999998876212222222222 24677888888775
No 25
>KOG2588 consensus Predicted DNA-binding protein [Transcription]
Probab=96.90 E-value=0.00056 Score=69.17 Aligned_cols=67 Identities=27% Similarity=0.385 Sum_probs=56.1
Q ss_pred CchhhhhhHHHHHHHHHHHHHHHHHHhcCCCCCCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 027547 23 SPTKIERKTIEKNRRDQMKNLYSTLKSLLPNQPSKEELSLPDQVDEAINYIKMLETKLKECKKRKESLQ 91 (222)
Q Consensus 23 ~~~~~~h~~~ER~RR~~mn~~~~~LrsLlP~~~~~~k~si~~iL~~ai~YIk~Lq~~v~~L~~~~~~l~ 91 (222)
..+|..||..||+=|--||++...|+.+||....+ ..++..|..||+||++|+..-+.++.....+.
T Consensus 274 ~~kRtAHN~IEKRYRsSINDKI~eLk~lV~g~~aK--l~kSavLr~ai~~i~dl~~~nq~lk~~~~~l~ 340 (953)
T KOG2588|consen 274 GEKRTAHNIIEKRYRSSINDKIIELKDLVPGTEAK--LNKSAVLRKAIDYIEDLQGYNQKLKLENASLR 340 (953)
T ss_pred CcccchhhHHHHHhhcchhHHHHHHHHhcCccHhh--hhhhhhHHHHHHHHHHhhccccccchhhhhhh
Confidence 47899999999999999999999999999987532 23344499999999999988888887666555
No 26
>cd04893 ACT_GcvR_1 ACT domains that comprise the Glycine Cleavage System Transcriptional Repressor (GcvR) protein, and other related domains. This CD includes the first of the two ACT domains that comprise the Glycine Cleavage System Transcriptional Repressor (GcvR) protein, and other related domains. The glycine cleavage enzyme system in Escherichia coli provides one-carbon units for cellular methylation reactions. This enzyme system, encoded by the gcvTHP operon and lpd gene, catalyzes the cleavage of glycine into CO2 + NH3 and transfers a one-carbon unit to tetrahydrofolate, producing 5,10-methylenetetrahydrofolate. The gcvTHP operon is activated by the GcvA protein in response to glycine and repressed by a GcvA/GcvR interaction in the absence of glycine. It has been proposed that the co-activator glycine acts through a mechanism of de-repression by binding to GcvR and preventing GcvR from interacting with GcvA to block GcvA's activator function. Evidence also suggests that GcvR int
Probab=96.82 E-value=0.019 Score=41.15 Aligned_cols=69 Identities=19% Similarity=0.250 Sum_probs=56.4
Q ss_pred EEEEEEcCCCCChHHHHHHHHHhCCceEEEEEEEEeCCEEEEEEEEEeccCccccCHHHHHHHHHHHHhccccc
Q 027547 129 EVILTSGVDDQFIFYEVIRILHQDGAEILNAKFSVVGNTIFHVIHAEIRDSMFGFGAAKISERLKGFVSGCASE 202 (222)
Q Consensus 129 ~V~v~~~~~~~~~L~~vl~~Le~lgL~V~~a~~s~~~~~~~~ti~~kv~~~~~~~~~~~l~~aL~~~I~~~~~~ 202 (222)
-+++.| +++||+..+|-+.|-++|.+|+.++....++.+++.+...+.. .+.+.+.++|..+-..+..+
T Consensus 3 iltv~g-~Dr~GiVa~vs~~la~~g~nI~d~~q~~~~~~F~m~~~~~~~~----~~~~~l~~~l~~~~~~~~l~ 71 (77)
T cd04893 3 VISALG-TDRPGILNELTRAVSESGCNILDSRMAILGTEFALTMLVEGSW----DAIAKLEAALPGLARRLDLT 71 (77)
T ss_pred EEEEEe-CCCChHHHHHHHHHHHcCCCEEEceeeEEcCEEEEEEEEEecc----ccHHHHHHHHHHHHHHcCCE
Confidence 456666 5899999999999999999999999999999888877777652 46788999888876654433
No 27
>PRK05007 PII uridylyl-transferase; Provisional
Probab=96.74 E-value=0.01 Score=60.88 Aligned_cols=79 Identities=14% Similarity=0.234 Sum_probs=58.3
Q ss_pred CeeEEEeeCC--eeEEEEEEcCCCCChHHHHHHHHHhCCceEEEEEEEEeCCEEEEEEEEEeccCccccC---HHHHHHH
Q 027547 117 PEIEIHEMGS--NLEVILTSGVDDQFIFYEVIRILHQDGAEILNAKFSVVGNTIFHVIHAEIRDSMFGFG---AAKISER 191 (222)
Q Consensus 117 p~VeV~~~g~--~v~V~v~~~~~~~~~L~~vl~~Le~lgL~V~~a~~s~~~~~~~~ti~~kv~~~~~~~~---~~~l~~a 191 (222)
|.|.+....+ .-.|.|.+ .++||+|++|.++|.++|++|.+|.|+|.++++..+|.+.-.++. .++ .+.|+++
T Consensus 796 ~~V~~d~~~s~~~TvlEV~a-~DRpGLL~~I~~~l~~~~l~I~~AkI~T~gera~DvFyV~~~~g~-~l~~~~~~~l~~~ 873 (884)
T PRK05007 796 TEVSFLPTHTDRRSYMELIA-LDQPGLLARVGKIFADLGISLHGARITTIGERVEDLFILATADRR-ALNEELQQELRQR 873 (884)
T ss_pred CEEEEccCCCCCeEEEEEEe-CCchHHHHHHHHHHHHCCcEEEEEEEeccCceEEEEEEEEcCCCC-cCCHHHHHHHHHH
Confidence 4555554333 23455555 589999999999999999999999999999999999998755544 344 3456666
Q ss_pred HHHHHh
Q 027547 192 LKGFVS 197 (222)
Q Consensus 192 L~~~I~ 197 (222)
|..++.
T Consensus 874 L~~~l~ 879 (884)
T PRK05007 874 LTEALN 879 (884)
T ss_pred HHHHHh
Confidence 666654
No 28
>PRK03381 PII uridylyl-transferase; Provisional
Probab=96.68 E-value=0.021 Score=57.71 Aligned_cols=80 Identities=15% Similarity=0.110 Sum_probs=63.1
Q ss_pred CeeEEEee-CCeeEEEEEEcCCCCChHHHHHHHHHhCCceEEEEEEEEeCCEEEEEEEEEeccCccccCHHHHHHHHHHH
Q 027547 117 PEIEIHEM-GSNLEVILTSGVDDQFIFYEVIRILHQDGAEILNAKFSVVGNTIFHVIHAEIRDSMFGFGAAKISERLKGF 195 (222)
Q Consensus 117 p~VeV~~~-g~~v~V~v~~~~~~~~~L~~vl~~Le~lgL~V~~a~~s~~~~~~~~ti~~kv~~~~~~~~~~~l~~aL~~~ 195 (222)
|.|.+... ....+|.|+| +++||+|.+|..+|..+|++|++|++.+.++.++.+|.+.-..+. ....+.++++|.++
T Consensus 588 ~~v~~~~~~~~~~~V~V~~-~DrpGLfa~i~~vL~~~glnI~dA~i~t~dg~~ld~F~V~~~~~~-~~~~~~l~~~L~~~ 665 (774)
T PRK03381 588 VHVEIAPADPHMVEVTVVA-PDRRGLLSKAAGVLALHRLRVRSASVRSHDGVAVLEFVVSPRFGS-PPDAALLRQDLRRA 665 (774)
T ss_pred CEEEEeeCCCCeEEEEEEe-cCCccHHHHHHHHHHHCCCeEEEeEEEecCCEEEEEEEEECCCCC-cchHHHHHHHHHHH
Confidence 44444322 3557788766 589999999999999999999999999988999999888754443 34457888999888
Q ss_pred Hhc
Q 027547 196 VSG 198 (222)
Q Consensus 196 I~~ 198 (222)
+.+
T Consensus 666 L~~ 668 (774)
T PRK03381 666 LDG 668 (774)
T ss_pred HcC
Confidence 877
No 29
>PRK00194 hypothetical protein; Validated
Probab=96.67 E-value=0.013 Score=42.89 Aligned_cols=76 Identities=16% Similarity=0.163 Sum_probs=59.0
Q ss_pred eEEEEEEcCCCCChHHHHHHHHHhCCceEEEEEEEEeCCEEEEEEEEEeccCccccCHHHHHHHHHHHHhccccccccc
Q 027547 128 LEVILTSGVDDQFIFYEVIRILHQDGAEILNAKFSVVGNTIFHVIHAEIRDSMFGFGAAKISERLKGFVSGCASEGEMQ 206 (222)
Q Consensus 128 v~V~v~~~~~~~~~L~~vl~~Le~lgL~V~~a~~s~~~~~~~~ti~~kv~~~~~~~~~~~l~~aL~~~I~~~~~~~~~~ 206 (222)
+.|++.| .++||++.+|.+.|-++|++|...+..+.++.++..+.+.+... ..+.+.+.+.|.++-........++
T Consensus 4 ~~ltv~g-~DrpGiva~vt~~la~~g~nI~~~~~~~~~~~~~~~~~v~~~~~--~~~~~~l~~~l~~l~~~~~~~~~~~ 79 (90)
T PRK00194 4 AIITVIG-KDKVGIIAGVSTVLAELNVNILDISQTIMDGYFTMIMLVDISES--KKDFAELKEELEELGKELGVKIRIQ 79 (90)
T ss_pred EEEEEEc-CCCCCHHHHHHHHHHHcCCCEEehhhHhhCCeeEEEEEEEecCC--CCCHHHHHHHHHHHHHHcCCEEEEE
Confidence 4466666 58999999999999999999999998888887777777776531 2467889998888776655555444
No 30
>cd04869 ACT_GcvR_2 ACT domains that comprise the Glycine Cleavage System Transcriptional Repressor (GcvR) protein, and other related domains. This CD includes the second of the two ACT domains that comprise the Glycine Cleavage System Transcriptional Repressor (GcvR) protein, and other related domains. The glycine cleavage enzyme system in Escherichia coli provides one-carbon units for cellular methylation reactions. This enzyme system, encoded by the gcvTHP operon and lpd gene, catalyzes the cleavage of glycine into CO2 + NH3 and transfers a one-carbon unit to tetrahydrofolate, producing 5,10-methylenetetrahydrofolate. The gcvTHP operon is activated by the GcvA protein in response to glycine and repressed by a GcvA/GcvR interaction in the absence of glycine. It has been proposed that the co-activator glycine acts through a mechanism of de-repression by binding to GcvR and preventing GcvR from interacting with GcvA to block GcvA's activator function. Evidence also suggests that GcvR in
Probab=96.59 E-value=0.041 Score=39.07 Aligned_cols=67 Identities=16% Similarity=0.117 Sum_probs=51.9
Q ss_pred EEEEEcCCCCChHHHHHHHHHhCCceEEEEEEEEeC------CEEEEEEEEEeccCccccCHHHHHHHHHHHHhccc
Q 027547 130 VILTSGVDDQFIFYEVIRILHQDGAEILNAKFSVVG------NTIFHVIHAEIRDSMFGFGAAKISERLKGFVSGCA 200 (222)
Q Consensus 130 V~v~~~~~~~~~L~~vl~~Le~lgL~V~~a~~s~~~------~~~~~ti~~kv~~~~~~~~~~~l~~aL~~~I~~~~ 200 (222)
|.+.| .+++|++.+|-+.|.++|++|...+..+.+ +.++..+.+.+.. ..+...+.++|..+-....
T Consensus 2 l~v~g-~D~~Giv~~it~~l~~~~~nI~~~~~~~~~~~~~~~~~~~~~~~v~~p~---~~~~~~l~~~l~~l~~~~~ 74 (81)
T cd04869 2 VEVVG-NDRPGIVHEVTQFLAQRNINIEDLSTETYSAPMSGTPLFKAQATLALPA---GTDLDALREELEELCDDLN 74 (81)
T ss_pred EEEEe-CCCCCHHHHHHHHHHHcCCCeEEeEeeeecCCCCCcceEEEEEEEecCC---CCCHHHHHHHHHHHHHHhc
Confidence 45656 589999999999999999999999998876 4555555555542 4678899999888776544
No 31
>PRK00275 glnD PII uridylyl-transferase; Provisional
Probab=96.59 E-value=0.022 Score=58.47 Aligned_cols=80 Identities=13% Similarity=0.177 Sum_probs=59.5
Q ss_pred CeeEEEeeCC--eeEEEEEEcCCCCChHHHHHHHHHhCCceEEEEEEEEeCCEEEEEEEEEeccCccccCH----HHHHH
Q 027547 117 PEIEIHEMGS--NLEVILTSGVDDQFIFYEVIRILHQDGAEILNAKFSVVGNTIFHVIHAEIRDSMFGFGA----AKISE 190 (222)
Q Consensus 117 p~VeV~~~g~--~v~V~v~~~~~~~~~L~~vl~~Le~lgL~V~~a~~s~~~~~~~~ti~~kv~~~~~~~~~----~~l~~ 190 (222)
|.|.+....+ ...|.|.+ .++||+|.+|..+|..+|++|++|.+++.|+++..+|.+.-.++. .++. +.|++
T Consensus 802 ~~V~i~~~~~~~~T~i~V~a-~DrpGLLa~I~~~L~~~~l~I~~AkI~T~g~~v~D~F~V~d~~g~-~l~~~~~~~~l~~ 879 (895)
T PRK00275 802 TQVTISNDAQRPVTVLEIIA-PDRPGLLARIGRIFLEFDLSLQNAKIATLGERVEDVFFITDADNQ-PLSDPQLCSRLQD 879 (895)
T ss_pred CEEEEEECCCCCeEEEEEEE-CCCCCHHHHHHHHHHHCCCEEEEeEEEecCCEEEEEEEEECCCCC-CCCCHHHHHHHHH
Confidence 4555554332 34566555 689999999999999999999999999999999999999865544 2322 45677
Q ss_pred HHHHHHhc
Q 027547 191 RLKGFVSG 198 (222)
Q Consensus 191 aL~~~I~~ 198 (222)
+|.+++.+
T Consensus 880 ~L~~~L~~ 887 (895)
T PRK00275 880 AICEQLDA 887 (895)
T ss_pred HHHHHHhc
Confidence 77777643
No 32
>KOG4447 consensus Transcription factor TWIST [Transcription]
Probab=96.58 E-value=0.0017 Score=53.04 Aligned_cols=56 Identities=23% Similarity=0.463 Sum_probs=48.4
Q ss_pred chhhhhhHHHHHHHHHHHHHHHHHHhcCCCCCCCCCCChhHHHHHHHHHHHHHHHHH
Q 027547 24 PTKIERKTIEKNRRDQMKNLYSTLKSLLPNQPSKEELSLPDQVDEAINYIKMLETKL 80 (222)
Q Consensus 24 ~~~~~h~~~ER~RR~~mn~~~~~LrsLlP~~~~~~k~si~~iL~~ai~YIk~Lq~~v 80 (222)
.++..||..||+|-+.+|+.|..||..+|..+. ||.|+...|.-|.-||.-|-+-.
T Consensus 77 ~qrv~anvrerqRtqsLn~AF~~lr~iiptlPs-dklSkiqtLklA~ryidfl~~vl 132 (173)
T KOG4447|consen 77 KQRVMANVRERQRTQSLNEAFAALRKIIPTLPS-DKLSKIQTLKLAARYIDFLYQVL 132 (173)
T ss_pred HHHHHHHHHHHHhhhhHHHHHHHHHhhcCCCCc-cccccccchhhcccCCchhhhcc
Confidence 477889999999999999999999999998764 67788777999999998876543
No 33
>KOG3898 consensus Transcription factor NeuroD and related HTH proteins [Transcription]
Probab=96.47 E-value=0.0024 Score=56.37 Aligned_cols=57 Identities=19% Similarity=0.348 Sum_probs=50.1
Q ss_pred CchhhhhhHHHHHHHHHHHHHHHHHHhcCCCCCCCCCCChhHHHHHHHHHHHHHHHH
Q 027547 23 SPTKIERKTIEKNRRDQMKNLYSTLKSLLPNQPSKEELSLPDQVDEAINYIKMLETK 79 (222)
Q Consensus 23 ~~~~~~h~~~ER~RR~~mn~~~~~LrsLlP~~~~~~k~si~~iL~~ai~YIk~Lq~~ 79 (222)
..+|..-|..||+|-..+|+.|+.||.++|......|.++..+|.-|-+||..|++-
T Consensus 70 ~~rR~kaNaRER~RMH~LNdAld~LReviP~~~~~~klskIetl~~a~~yi~als~~ 126 (254)
T KOG3898|consen 70 TLRRLKANARERTRMHDLNDALDALREVIPHGLHPPKLSKIETLRLAANYIAALSEV 126 (254)
T ss_pred hhhcccccchhhccccchhHHHHHhHhhccCcCCCCCCCcchhHHhhhcchhhhccc
Confidence 356677889999999999999999999999877777888889999999999998753
No 34
>cd04870 ACT_PSP_1 CT domains found N-terminal of phosphoserine phosphatase (PSP, SerB). The ACT_PSP_1 CD includes the first of the two ACT domains found N-terminal of phosphoserine phosphatase (PSP, SerB). PSPs belong to the L-2-haloacid dehalogenase-like protein superfamily. PSP is involved in serine metabolism; serine is synthesized from phosphoglycerate through sequential reactions catalyzed by 3-phosphoglycerate dehydrogenase (SerA), 3-phosphoserine aminotransferase (SerC), and SerB. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=96.47 E-value=0.036 Score=39.27 Aligned_cols=67 Identities=16% Similarity=0.136 Sum_probs=52.7
Q ss_pred EcCCCCChHHHHHHHHHhCCceEEEEEEEEeCCEEEEEEEEEeccCccccCHHHHHHHHHHHHhcccccc
Q 027547 134 SGVDDQFIFYEVIRILHQDGAEILNAKFSVVGNTIFHVIHAEIRDSMFGFGAAKISERLKGFVSGCASEG 203 (222)
Q Consensus 134 ~~~~~~~~L~~vl~~Le~lgL~V~~a~~s~~~~~~~~ti~~kv~~~~~~~~~~~l~~aL~~~I~~~~~~~ 203 (222)
.+.++||+..++.++|-++|+++...+.++.++.+...+.+.+.. ..+.++++++|..+-......+
T Consensus 5 ~G~DrpGiv~~vt~~la~~~~nI~dl~~~~~~~~f~~~~~v~~p~---~~~~~~l~~~l~~l~~~l~l~i 71 (75)
T cd04870 5 TGPDRPGLTSALTEVLAAHGVRILDVGQAVIHGRLSLGILVQIPD---SADSEALLKDLLFKAHELGLQV 71 (75)
T ss_pred EcCCCCCHHHHHHHHHHHCCCCEEecccEEEcCeeEEEEEEEcCC---CCCHHHHHHHHHHHHHHcCceE
Confidence 346899999999999999999999999888888766666665543 3578899999888776544333
No 35
>cd04875 ACT_F4HF-DF N-terminal ACT domain of formyltetrahydrofolate deformylase (F4HF-DF; formyltetrahydrofolate hydrolase). This CD includes the N-terminal ACT domain of formyltetrahydrofolate deformylase (F4HF-DF; formyltetrahydrofolate hydrolase) which catalyzes the hydrolysis of 10-formyltetrahydrofolate (formyl-FH4) to FH4 and formate. Formyl-FH4 hydrolase generates the formate that is used by purT-encoded 5'-phosphoribosylglycinamide transformylase for step three of de novo purine nucleotide synthesis. Formyl-FH4 hydrolase, a hexamer which is activated by methionine and inhibited by glycine, is proposed to regulate the balance FH4 and C1-FH4 in response to changing growth conditions. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=96.45 E-value=0.037 Score=38.95 Aligned_cols=68 Identities=15% Similarity=0.153 Sum_probs=49.1
Q ss_pred EEEEEcCCCCChHHHHHHHHHhCCceEEEEEEEEeCCEEEEEEEEEeccCccccCHHHHHHHHHHHHhc
Q 027547 130 VILTSGVDDQFIFYEVIRILHQDGAEILNAKFSVVGNTIFHVIHAEIRDSMFGFGAAKISERLKGFVSG 198 (222)
Q Consensus 130 V~v~~~~~~~~~L~~vl~~Le~lgL~V~~a~~s~~~~~~~~ti~~kv~~~~~~~~~~~l~~aL~~~I~~ 198 (222)
|.+.| .++||++.+|.+.|-++|+.+...+..+..+...+.+.+++.-.....+.+++.++|..+-..
T Consensus 2 i~v~g-~D~~Giv~~it~~l~~~g~nI~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~l~~~l~~l~~~ 69 (74)
T cd04875 2 LTLSC-PDRPGIVAAVSGFLAEHGGNIVESDQFVDPDSGRFFMRVEFELEGFDLSREALEAAFAPVAAE 69 (74)
T ss_pred EEEEc-CCCCCHHHHHHHHHHHcCCCEEeeeeeecCCCCeEEEEEEEEeCCCCCCHHHHHHHHHHHHHH
Confidence 45555 589999999999999999999999988643322344455554433125788999998887653
No 36
>cd04872 ACT_1ZPV ACT domain proteins similar to the yet uncharacterized Streptococcus pneumoniae ACT domain protein. This CD, ACT_1ZPV, includes those single ACT domain proteins similar to the yet uncharacterized Streptococcus pneumoniae ACT domain protein (pdb structure 1ZPV). Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=96.45 E-value=0.02 Score=41.86 Aligned_cols=75 Identities=15% Similarity=0.154 Sum_probs=58.9
Q ss_pred EEEEEEcCCCCChHHHHHHHHHhCCceEEEEEEEEeCCEEEEEEEEEeccCccccCHHHHHHHHHHHHhccccccccc
Q 027547 129 EVILTSGVDDQFIFYEVIRILHQDGAEILNAKFSVVGNTIFHVIHAEIRDSMFGFGAAKISERLKGFVSGCASEGEMQ 206 (222)
Q Consensus 129 ~V~v~~~~~~~~~L~~vl~~Le~lgL~V~~a~~s~~~~~~~~ti~~kv~~~~~~~~~~~l~~aL~~~I~~~~~~~~~~ 206 (222)
.|.+.| +++||++.+|.+.|-++|++|..++..+.++.++..+.+.+.. ...+.+++.++|..+-........++
T Consensus 3 vl~i~g-~D~pGiva~vt~~la~~g~nI~~~~~~~~~~~f~~~~~v~~~~--~~~~~~~L~~~l~~l~~~~~l~~~i~ 77 (88)
T cd04872 3 VITVVG-KDRVGIVAGVSTKLAELNVNILDISQTIMDGYFTMIMIVDISE--SNLDFAELQEELEELGKELGVKIRIQ 77 (88)
T ss_pred EEEEEc-CCCCCHHHHHHHHHHHcCCCEEechhHhhCCccEEEEEEEeCC--CCCCHHHHHHHHHHHHHHcCCEEEEE
Confidence 356666 5899999999999999999999999888888777777776553 13578999999998877655444443
No 37
>PRK05092 PII uridylyl-transferase; Provisional
Probab=96.41 E-value=0.044 Score=56.52 Aligned_cols=82 Identities=17% Similarity=0.155 Sum_probs=61.8
Q ss_pred CeeEEEeeCC--eeEEEEEEcCCCCChHHHHHHHHHhCCceEEEEEEEEeCCEEEEEEEEEeccCccccC---HHHHHHH
Q 027547 117 PEIEIHEMGS--NLEVILTSGVDDQFIFYEVIRILHQDGAEILNAKFSVVGNTIFHVIHAEIRDSMFGFG---AAKISER 191 (222)
Q Consensus 117 p~VeV~~~g~--~v~V~v~~~~~~~~~L~~vl~~Le~lgL~V~~a~~s~~~~~~~~ti~~kv~~~~~~~~---~~~l~~a 191 (222)
|.|.+....+ ...|.|.+ .++||+|.+|..+|.++|++|.+|.+++.++++..+|.+.-.++....+ .+.|+++
T Consensus 831 ~~V~~~~~~s~~~t~i~I~~-~DrpGLl~~I~~~l~~~gl~I~~A~I~T~~~~~~D~F~v~d~~g~~i~~~~~~~~l~~~ 909 (931)
T PRK05092 831 PRVTIDNEASNRFTVIEVNG-RDRPGLLYDLTRALSDLNLNIASAHIATYGERAVDVFYVTDLFGLKITNEARQAAIRRA 909 (931)
T ss_pred CEEEEeeCCCCCeEEEEEEE-CCcCcHHHHHHHHHHHCCceEEEEEEEEcCCEEEEEEEEeCCCCCcCCCHHHHHHHHHH
Confidence 4555554333 34566655 5899999999999999999999999999999999999997655441122 3568888
Q ss_pred HHHHHhcc
Q 027547 192 LKGFVSGC 199 (222)
Q Consensus 192 L~~~I~~~ 199 (222)
|.+++...
T Consensus 910 L~~~L~~~ 917 (931)
T PRK05092 910 LLAALAEG 917 (931)
T ss_pred HHHHhcCc
Confidence 88888654
No 38
>PRK04374 PII uridylyl-transferase; Provisional
Probab=96.39 E-value=0.035 Score=56.93 Aligned_cols=78 Identities=13% Similarity=0.226 Sum_probs=57.3
Q ss_pred CeeEEEeeCC--eeEEEEEEcCCCCChHHHHHHHHHhCCceEEEEEEEEeCCEEEEEEEEEeccCccccCH---HHHHHH
Q 027547 117 PEIEIHEMGS--NLEVILTSGVDDQFIFYEVIRILHQDGAEILNAKFSVVGNTIFHVIHAEIRDSMFGFGA---AKISER 191 (222)
Q Consensus 117 p~VeV~~~g~--~v~V~v~~~~~~~~~L~~vl~~Le~lgL~V~~a~~s~~~~~~~~ti~~kv~~~~~~~~~---~~l~~a 191 (222)
|.|.+....+ ...|.|.+ .++||+|.+|..+|..+|++|++|.++|.++++..+|.+.-.++. ..+. ..|+++
T Consensus 784 ~~V~~~~~~~~~~t~leI~a-~DrpGLLa~Ia~~l~~~~l~I~~AkI~T~g~~a~D~F~V~d~~g~-~~~~~~~~~l~~~ 861 (869)
T PRK04374 784 PRVEFSESAGGRRTRISLVA-PDRPGLLADVAHVLRMQHLRVHDARIATFGERAEDQFQITDEHDR-PLSESARQALRDA 861 (869)
T ss_pred CeEEEeecCCCCeEEEEEEe-CCcCcHHHHHHHHHHHCCCeEEEeEEEecCCEEEEEEEEECCCCC-cCChHHHHHHHHH
Confidence 4566554333 34566655 589999999999999999999999999999999999999755444 2322 455555
Q ss_pred HHHHH
Q 027547 192 LKGFV 196 (222)
Q Consensus 192 L~~~I 196 (222)
|..++
T Consensus 862 L~~~l 866 (869)
T PRK04374 862 LCACL 866 (869)
T ss_pred HHHHh
Confidence 55555
No 39
>PF13291 ACT_4: ACT domain; PDB: 2KO1_B 3IBW_A.
Probab=96.36 E-value=0.023 Score=40.55 Aligned_cols=49 Identities=12% Similarity=0.249 Sum_probs=40.3
Q ss_pred EEEEEEcCCCCChHHHHHHHHHhCCceEEEEEEEE--eCCEEEEEEEEEecc
Q 027547 129 EVILTSGVDDQFIFYEVIRILHQDGAEILNAKFSV--VGNTIFHVIHAEIRD 178 (222)
Q Consensus 129 ~V~v~~~~~~~~~L~~vl~~Le~lgL~V~~a~~s~--~~~~~~~ti~~kv~~ 178 (222)
.+.|.+ .+++|+|.+|..++-+.++.|.++++.. .++.+...|.+++.+
T Consensus 8 ~l~i~~-~dr~GlL~dI~~~i~~~~~nI~~i~~~~~~~~~~~~~~l~v~V~d 58 (80)
T PF13291_consen 8 RLRIEA-EDRPGLLADITSVISENGVNIRSINARTNKDDGTARITLTVEVKD 58 (80)
T ss_dssp EEEEEE-E--TTHHHHHHHHHHCSSSEEEEEEEEE--ETTEEEEEEEEEESS
T ss_pred EEEEEE-EcCCCHHHHHHHHHHHCCCCeEEEEeEEeccCCEEEEEEEEEECC
Confidence 445555 4889999999999999999999999998 467889999999875
No 40
>PRK03059 PII uridylyl-transferase; Provisional
Probab=96.31 E-value=0.031 Score=57.13 Aligned_cols=78 Identities=10% Similarity=0.149 Sum_probs=53.7
Q ss_pred eeEEEeeC--CeeEEEEEEcCCCCChHHHHHHHHHhCCceEEEEEEEEeCCEEEEEEEEEeccCccccCHHHHHHHHHHH
Q 027547 118 EIEIHEMG--SNLEVILTSGVDDQFIFYEVIRILHQDGAEILNAKFSVVGNTIFHVIHAEIRDSMFGFGAAKISERLKGF 195 (222)
Q Consensus 118 ~VeV~~~g--~~v~V~v~~~~~~~~~L~~vl~~Le~lgL~V~~a~~s~~~~~~~~ti~~kv~~~~~~~~~~~l~~aL~~~ 195 (222)
.|.+.... ....|.|.+ .++||+|.+|..+|..+|++|++|.+++.|+++..+|.+.-.......-.+.|+++|.++
T Consensus 775 ~V~~~~~~~~~~T~i~V~a-~DrpGLLa~Ia~~L~~~~l~I~~AkI~T~~~~v~DvF~V~~~~~~~~~~~~~l~~~L~~~ 853 (856)
T PRK03059 775 RVDLRPDERGQYYILSVSA-NDRPGLLYAIARVLAEHRVSVHTAKINTLGERVEDTFLIDGSGLSDNRLQIQLETELLDA 853 (856)
T ss_pred eEEEEEcCCCCEEEEEEEe-CCcchHHHHHHHHHHHCCCeEEEEEEeecCCEEEEEEEEcCCCCCCHHHHHHHHHHHHHH
Confidence 45544332 235666656 589999999999999999999999999999999999998322111011133555555554
Q ss_pred H
Q 027547 196 V 196 (222)
Q Consensus 196 I 196 (222)
+
T Consensus 854 L 854 (856)
T PRK03059 854 L 854 (856)
T ss_pred h
Confidence 4
No 41
>PRK01759 glnD PII uridylyl-transferase; Provisional
Probab=96.19 E-value=0.033 Score=56.97 Aligned_cols=78 Identities=15% Similarity=0.207 Sum_probs=55.3
Q ss_pred CeeEEEeeCCe--eEEEEEEcCCCCChHHHHHHHHHhCCceEEEEEEEEeCCEEEEEEEEEeccCccccCHHHHHHHHHH
Q 027547 117 PEIEIHEMGSN--LEVILTSGVDDQFIFYEVIRILHQDGAEILNAKFSVVGNTIFHVIHAEIRDSMFGFGAAKISERLKG 194 (222)
Q Consensus 117 p~VeV~~~g~~--v~V~v~~~~~~~~~L~~vl~~Le~lgL~V~~a~~s~~~~~~~~ti~~kv~~~~~~~~~~~l~~aL~~ 194 (222)
|.|.+....+. -.|.|.+ .++||+|.+|.++|.++|++|.+|.|+|.++++..+|.+.-.++. .++.++. +.|++
T Consensus 771 ~~V~~dn~~s~~~T~iev~a-~DrpGLL~~I~~~l~~~~l~i~~AkI~T~gerv~D~Fyv~~~~g~-~l~~~~~-~~l~~ 847 (854)
T PRK01759 771 TEVRFLNEEKQEQTEMELFA-LDRAGLLAQVSQVFSELNLNLLNAKITTIGEKAEDFFILTNQQGQ-ALDEEER-KALKS 847 (854)
T ss_pred CEEEEccCCCCCeEEEEEEe-CCchHHHHHHHHHHHHCCCEEEEEEEcccCceEEEEEEEECCCCC-cCChHHH-HHHHH
Confidence 45555443332 3455555 589999999999999999999999999999999999998755544 3333222 44444
Q ss_pred HHh
Q 027547 195 FVS 197 (222)
Q Consensus 195 ~I~ 197 (222)
.+.
T Consensus 848 ~L~ 850 (854)
T PRK01759 848 RLL 850 (854)
T ss_pred HHH
Confidence 443
No 42
>PRK03381 PII uridylyl-transferase; Provisional
Probab=96.04 E-value=0.071 Score=53.98 Aligned_cols=75 Identities=12% Similarity=0.139 Sum_probs=55.6
Q ss_pred eeEEEeeCC--eeEEEEEEcCCCCChHHHHHHHHHhCCceEEEEEEEEeCCEEEEEEEEEeccCccccCHHHHHHHHHHH
Q 027547 118 EIEIHEMGS--NLEVILTSGVDDQFIFYEVIRILHQDGAEILNAKFSVVGNTIFHVIHAEIRDSMFGFGAAKISERLKGF 195 (222)
Q Consensus 118 ~VeV~~~g~--~v~V~v~~~~~~~~~L~~vl~~Le~lgL~V~~a~~s~~~~~~~~ti~~kv~~~~~~~~~~~l~~aL~~~ 195 (222)
.|.+....+ ...|.|.+ .++||+|.+|..+|..+|++|.+|.+++.++++..+|.+.-.++. .++ +. .+.|++.
T Consensus 696 ~v~~~~~~~~~~t~i~V~a-~DrpGLla~Ia~~L~~~~lnI~~AkI~T~g~~a~D~F~V~d~~g~-~~~-~~-~~~l~~~ 771 (774)
T PRK03381 696 RVLWLDGASPDATVLEVRA-ADRPGLLARLARALERAGVDVRWARVATLGADVVDVFYVTGAAGG-PLA-DA-RAAVEQA 771 (774)
T ss_pred EEEEEECCCCCeEEEEEEe-CCchhHHHHHHHHHHHCCCeEEEEEEeecCCeEEEEEEEECCCCC-cCc-hH-HHHHHHH
Confidence 444443332 35566655 689999999999999999999999999999999999999755544 333 23 5666655
Q ss_pred H
Q 027547 196 V 196 (222)
Q Consensus 196 I 196 (222)
+
T Consensus 772 L 772 (774)
T PRK03381 772 V 772 (774)
T ss_pred h
Confidence 4
No 43
>PRK05007 PII uridylyl-transferase; Provisional
Probab=95.77 E-value=0.1 Score=53.59 Aligned_cols=82 Identities=13% Similarity=0.179 Sum_probs=60.7
Q ss_pred CCeeEEEee--CCeeEEEEEEcCCCCChHHHHHHHHHhCCceEEEEEEEEe-CCEEEEEEEEEeccCccccCH---HHHH
Q 027547 116 APEIEIHEM--GSNLEVILTSGVDDQFIFYEVIRILHQDGAEILNAKFSVV-GNTIFHVIHAEIRDSMFGFGA---AKIS 189 (222)
Q Consensus 116 ~p~VeV~~~--g~~v~V~v~~~~~~~~~L~~vl~~Le~lgL~V~~a~~s~~-~~~~~~ti~~kv~~~~~~~~~---~~l~ 189 (222)
.|.|.+... .....|.|.| .+++|+|.+|..+|..+|++|+.|.+.+. ++.++-+|.+.-.++. ..+. +.|.
T Consensus 688 ~p~V~i~~~~~~~~t~V~V~a-~DrpGLfa~Ia~~La~~~L~I~~A~I~T~~dg~alD~F~V~d~~g~-~~~~~~~~~I~ 765 (884)
T PRK05007 688 KPLVLLSKQATRGGTEIFIWS-PDRPYLFAAVCAELDRRNLSVHDAQIFTSRDGMAMDTFIVLEPDGS-PLSQDRHQVIR 765 (884)
T ss_pred CCeEEEEecCCCCeEEEEEEe-cCCcCHHHHHHHHHHHCCCEEEEEEEEEcCCCeEEEEEEEECCCCC-CCCHHHHHHHH
Confidence 455555543 3356777766 58999999999999999999999998866 5599888888766554 3333 3477
Q ss_pred HHHHHHHhcc
Q 027547 190 ERLKGFVSGC 199 (222)
Q Consensus 190 ~aL~~~I~~~ 199 (222)
++|.+++...
T Consensus 766 ~~L~~aL~~~ 775 (884)
T PRK05007 766 KALEQALTQS 775 (884)
T ss_pred HHHHHHHcCC
Confidence 7777777654
No 44
>PRK01759 glnD PII uridylyl-transferase; Provisional
Probab=95.72 E-value=0.11 Score=53.27 Aligned_cols=82 Identities=10% Similarity=0.110 Sum_probs=61.0
Q ss_pred CCeeEEEeeC--CeeEEEEEEcCCCCChHHHHHHHHHhCCceEEEEEEEE-eCCEEEEEEEEEeccCccccCHH---HHH
Q 027547 116 APEIEIHEMG--SNLEVILTSGVDDQFIFYEVIRILHQDGAEILNAKFSV-VGNTIFHVIHAEIRDSMFGFGAA---KIS 189 (222)
Q Consensus 116 ~p~VeV~~~g--~~v~V~v~~~~~~~~~L~~vl~~Le~lgL~V~~a~~s~-~~~~~~~ti~~kv~~~~~~~~~~---~l~ 189 (222)
.|.|.+.... ....|.|.+ .++||+|.+|..+|..+||+|++|.+.+ .++.++.+|.+.-.++. .++.+ .|.
T Consensus 664 ~~~V~i~~~~~~~~t~V~V~~-~DrpGLfa~Ia~~L~~~~L~I~~A~I~T~~~g~alD~F~V~d~~g~-~~~~~~~~~l~ 741 (854)
T PRK01759 664 DLLVKISNRFSRGGTEIFIYC-QDQANLFLKVVSTIGAKKLSIHDAQIITSQDGYVLDSFIVTELNGK-LLEFDRRRQLE 741 (854)
T ss_pred CCEEEEEecCCCCeEEEEEEe-cCCccHHHHHHHHHHHCCCeEEEEEEEEccCCEEEEEEEEeCCCCC-CCCHHHHHHHH
Confidence 4555554432 345777766 5899999999999999999999999876 79999999998765554 33432 566
Q ss_pred HHHHHHHhcc
Q 027547 190 ERLKGFVSGC 199 (222)
Q Consensus 190 ~aL~~~I~~~ 199 (222)
++|.+++.+.
T Consensus 742 ~~L~~aL~~~ 751 (854)
T PRK01759 742 QALTKALNTN 751 (854)
T ss_pred HHHHHHHcCC
Confidence 7777777654
No 45
>cd04886 ACT_ThrD-II-like C-terminal ACT domain of biodegradative (catabolic) threonine dehydratase II (ThrD-II) and other related ACT domains. This CD includes the C-terminal ACT domain of biodegradative (catabolic) threonine dehydratase II (ThrD-II) and other related ACT domains. The Escherichia coli tdcB gene product, ThrD-II, anaerobically catalyzes the pyridoxal phosphate-dependent dehydration of L-threonine and L-serine to ammonia and to alpha-ketobutyrate and pyruvate, respectively. Tetrameric ThrD-II is subject to allosteric activation by AMP, inhibition by alpha-keto acids, and catabolite inactivation by several metabolites of glycolysis and the citric acid cycle. Also included in this CD are N-terminal ACT domains present in smaller (~170 a.a.) archaeal proteins of unknown function. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=95.68 E-value=0.11 Score=34.96 Aligned_cols=56 Identities=14% Similarity=0.163 Sum_probs=39.8
Q ss_pred CCCCChHHHHHHHHHhCCceEEEEEEEEe-----CCEEEEEEEEEeccCccccCHHHHHHHHHH
Q 027547 136 VDDQFIFYEVIRILHQDGAEILNAKFSVV-----GNTIFHVIHAEIRDSMFGFGAAKISERLKG 194 (222)
Q Consensus 136 ~~~~~~L~~vl~~Le~lgL~V~~a~~s~~-----~~~~~~ti~~kv~~~~~~~~~~~l~~aL~~ 194 (222)
.++||.|.+|+++|.+.|++|.+.+.... ++.....+++.+.+. .....+.++|++
T Consensus 6 ~d~~G~L~~i~~~i~~~~~nI~~i~~~~~~~~~~~~~~~~~i~v~~~~~---~~l~~l~~~l~~ 66 (73)
T cd04886 6 PDRPGQLAKLLAVIAEAGANIIEVSHDRAFKTLPLGEVEVELTLETRGA---EHIEEIIAALRE 66 (73)
T ss_pred CCCCChHHHHHHHHHHcCCCEEEEEEEeccCCCCCceEEEEEEEEeCCH---HHHHHHHHHHHH
Confidence 58899999999999999999999987754 355666677666431 223455555443
No 46
>KOG4395 consensus Transcription factor Atonal, contains HTH domain [Transcription]
Probab=95.59 E-value=0.024 Score=49.90 Aligned_cols=58 Identities=21% Similarity=0.363 Sum_probs=51.9
Q ss_pred chhhhhhHHHHHHHHHHHHHHHHHHhcCCCCCCCCCCChhHHHHHHHHHHHHHHHHHH
Q 027547 24 PTKIERKTIEKNRRDQMKNLYSTLKSLLPNQPSKEELSLPDQVDEAINYIKMLETKLK 81 (222)
Q Consensus 24 ~~~~~h~~~ER~RR~~mn~~~~~LrsLlP~~~~~~k~si~~iL~~ai~YIk~Lq~~v~ 81 (222)
-+|..-|..||+|-..+|..|+.||..+|......|.|.-+.|..|-.||--|-...+
T Consensus 173 ~rr~aanarErrrm~gLN~AfD~Lr~v~p~~~~d~~LSkyetLqmaq~yi~~l~~~l~ 230 (285)
T KOG4395|consen 173 HRRLAANARERRRMNGLNSAFDRLRLVVPDGDSDKKLSKYETLQMAQGYILALGCLLD 230 (285)
T ss_pred hhhcccchHHHHHhhhHHHHHHHHHHhcCCCCccchhhhhhHHHHHHHHHhhhHHhhc
Confidence 3566788999999999999999999999999999999999999999999988876553
No 47
>cd04887 ACT_MalLac-Enz ACT_MalLac-Enz CD includes the N-terminal ACT domain of putative NAD-dependent malic enzyme 1, Bacillus subtilis YqkI and related domains. The ACT_MalLac-Enz CD includes the N-terminal ACT domain of putative NAD-dependent malic enzyme 1, Bacillus subtilis YqkI, a malolactic enzyme (MalLac-Enz) which converts malate to lactate, and other related ACT domains. The yqkJ product is predicted to convert malate directly to lactate, as opposed to related malic enzymes that convert malate to pyruvate. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=95.58 E-value=0.12 Score=35.82 Aligned_cols=43 Identities=9% Similarity=0.067 Sum_probs=36.9
Q ss_pred CCCCChHHHHHHHHHhCCceEEEEEEEEe-CCEEEEEEEEEecc
Q 027547 136 VDDQFIFYEVIRILHQDGAEILNAKFSVV-GNTIFHVIHAEIRD 178 (222)
Q Consensus 136 ~~~~~~L~~vl~~Le~lgL~V~~a~~s~~-~~~~~~ti~~kv~~ 178 (222)
.+++|.|.+|+.+|.+.|..|.+++.... ++.....|.+++.+
T Consensus 7 ~d~~g~L~~i~~~i~~~~~nI~~v~~~~~~~~~~~~~~~vev~~ 50 (74)
T cd04887 7 PNRPGMLGRVTTAIGEAGGDIGAIDLVEQGRDYTVRDITVDAPS 50 (74)
T ss_pred CCCCchHHHHHHHHHHcCCcEEEEEEEEecCCEEEEEEEEEcCC
Confidence 48899999999999999999999998876 46777778887765
No 48
>TIGR01693 UTase_glnD [Protein-PII] uridylyltransferase. This model describes GlnD, the uridylyltransferase/uridylyl-removing enzyme for the nitrogen regulatory protein PII. Not all homologs of PII share the property of uridylyltransferase modification on the characteristic Tyr residue (see Prosite pattern PS00496 and document PDOC00439), but the modification site is preserved in the PII homolog of all species with a member of this family.
Probab=95.57 E-value=0.1 Score=53.20 Aligned_cols=82 Identities=13% Similarity=0.092 Sum_probs=61.6
Q ss_pred CCeeEEEe--eCCeeEEEEEEcCCCCChHHHHHHHHHhCCceEEEEEEE-EeCCEEEEEEEEEeccCccccC----HHHH
Q 027547 116 APEIEIHE--MGSNLEVILTSGVDDQFIFYEVIRILHQDGAEILNAKFS-VVGNTIFHVIHAEIRDSMFGFG----AAKI 188 (222)
Q Consensus 116 ~p~VeV~~--~g~~v~V~v~~~~~~~~~L~~vl~~Le~lgL~V~~a~~s-~~~~~~~~ti~~kv~~~~~~~~----~~~l 188 (222)
.|.|.+.. ......|.|.+ .++||+|.+|..+|..+|++|++|.++ +.++.++.+|.++-.++. ..+ .+.|
T Consensus 655 ~~~v~~~~~~~~~~t~i~V~~-~DrpgLla~i~~~L~~~~l~I~~A~I~tt~~g~~lD~F~V~~~~g~-~~~~~~~~~~i 732 (850)
T TIGR01693 655 GPLALIDGTRPSGGTEVFIYA-PDQPGLFAKVAGALAMLSLSVHDAQVNTTKDGVALDTFVVQDLFGS-PPAAERVFQEL 732 (850)
T ss_pred CCEEEEeccCCCCeEEEEEEe-CCCCcHHHHHHHHHHHCCCeEEEEEEEEecCCEEEEEEEEECCCCC-CCCcHHHHHHH
Confidence 34555433 22345677766 589999999999999999999999999 779999999999876655 332 3357
Q ss_pred HHHHHHHHhcc
Q 027547 189 SERLKGFVSGC 199 (222)
Q Consensus 189 ~~aL~~~I~~~ 199 (222)
.++|.+++..-
T Consensus 733 ~~~L~~~L~~~ 743 (850)
T TIGR01693 733 LQGLVDVLAGL 743 (850)
T ss_pred HHHHHHHHcCC
Confidence 77887887664
No 49
>TIGR01693 UTase_glnD [Protein-PII] uridylyltransferase. This model describes GlnD, the uridylyltransferase/uridylyl-removing enzyme for the nitrogen regulatory protein PII. Not all homologs of PII share the property of uridylyltransferase modification on the characteristic Tyr residue (see Prosite pattern PS00496 and document PDOC00439), but the modification site is preserved in the PII homolog of all species with a member of this family.
Probab=95.52 E-value=0.1 Score=53.27 Aligned_cols=77 Identities=19% Similarity=0.198 Sum_probs=55.4
Q ss_pred CeeEEEeeCC--eeEEEEEEcCCCCChHHHHHHHHHhCCceEEEEEEEEeCCEEEEEEEEEeccCccccCHHHHHHHHHH
Q 027547 117 PEIEIHEMGS--NLEVILTSGVDDQFIFYEVIRILHQDGAEILNAKFSVVGNTIFHVIHAEIRDSMFGFGAAKISERLKG 194 (222)
Q Consensus 117 p~VeV~~~g~--~v~V~v~~~~~~~~~L~~vl~~Le~lgL~V~~a~~s~~~~~~~~ti~~kv~~~~~~~~~~~l~~aL~~ 194 (222)
|.|.+....+ .-.|.|.+ .++||+|.+|.++|.++|++|.+|.+++.++++..+|.+....+. ..+. ...+.|++
T Consensus 767 ~~V~~d~~~s~~~t~~~v~~-~DrpGll~~i~~~l~~~~~~i~~a~i~t~~~~~~d~F~v~~~~g~-~~~~-~~~~~l~~ 843 (850)
T TIGR01693 767 PRVTILNTASRKATIMEVRA-LDRPGLLARVGRTLEELGLSIQSAKITTFGEKAEDVFYVTDLFGL-KLTD-EEEQRLLE 843 (850)
T ss_pred CeEEEccCCCCCeEEEEEEE-CCccHHHHHHHHHHHHCCCeEEEEEEEecCccceeEEEEECCCCC-CCCH-HHHHHHHH
Confidence 4555554443 24555555 589999999999999999999999999999999988888765544 2332 33344444
Q ss_pred HH
Q 027547 195 FV 196 (222)
Q Consensus 195 ~I 196 (222)
.+
T Consensus 844 ~L 845 (850)
T TIGR01693 844 VL 845 (850)
T ss_pred HH
Confidence 44
No 50
>KOG3910 consensus Helix loop helix transcription factor [Transcription]
Probab=95.40 E-value=0.017 Score=55.20 Aligned_cols=60 Identities=15% Similarity=0.246 Sum_probs=47.8
Q ss_pred CchhhhhhHHHHHHHHHHHHHHHHHHhcCCCCCCCCC-CChhHHHHHHHHHHHHHHHHHHH
Q 027547 23 SPTKIERKTIEKNRRDQMKNLYSTLKSLLPNQPSKEE-LSLPDQVDEAINYIKMLETKLKE 82 (222)
Q Consensus 23 ~~~~~~h~~~ER~RR~~mn~~~~~LrsLlP~~~~~~k-~si~~iL~~ai~YIk~Lq~~v~~ 82 (222)
..+|+.+|+.||-|-..||+.|..|..+.=...+.+| .++..||-.|+..|-.|+++|++
T Consensus 524 kERR~aNNARERlRVRDINeAfKELGRMCqlHlkSeKpQTKLgILhqAVsVIlsLEQQVRE 584 (632)
T KOG3910|consen 524 KERRMANNARERLRVRDINEAFKELGRMCQLHLKSEKPQTKLGILHQAVSVILSLEQQVRE 584 (632)
T ss_pred HHHHhhhhhhhheehhhHHHHHHHHHHHHHHhhcccCcchhhhHHHHHHHHHHHHHHHHHH
Confidence 3578889999999999999999999887654433322 24556699999999999999976
No 51
>PRK04374 PII uridylyl-transferase; Provisional
Probab=95.26 E-value=0.14 Score=52.64 Aligned_cols=73 Identities=22% Similarity=0.306 Sum_probs=56.8
Q ss_pred CeeEEEEEEcCCCCChHHHHHHHHHhCCceEEEEEEEE-eCCEEEEEEEEEeccCccccCHHHHHHHHHHHHhcc
Q 027547 126 SNLEVILTSGVDDQFIFYEVIRILHQDGAEILNAKFSV-VGNTIFHVIHAEIRDSMFGFGAAKISERLKGFVSGC 199 (222)
Q Consensus 126 ~~v~V~v~~~~~~~~~L~~vl~~Le~lgL~V~~a~~s~-~~~~~~~ti~~kv~~~~~~~~~~~l~~aL~~~I~~~ 199 (222)
...+|.|.| .+++|+|.++.-+|..+|++|+.|.+.+ .+|.++.+|.+.-.++........|.++|.+++.+-
T Consensus 689 ~~~~v~v~~-~d~~gLFa~i~g~l~~~~lnI~~A~i~t~~~g~~ld~f~V~~~~~~~~~~~~~i~~~l~~~l~~~ 762 (869)
T PRK04374 689 DALEVFVYS-PDRDGLFAAIVATLDRKGYGIHRARVLDAPHDAIFDVFEVLPQDTYADGDPQRLAAALRQVLAGD 762 (869)
T ss_pred CeEEEEEEe-CCCccHHHHHHHHHHHCCCeEEEEEEEEcCCCEEEEEEEEeCCCCCChHHHHHHHHHHHHHHcCC
Confidence 467888877 5899999999999999999999999986 688999999987544431122445777777777653
No 52
>PRK05092 PII uridylyl-transferase; Provisional
Probab=95.12 E-value=0.27 Score=50.77 Aligned_cols=82 Identities=15% Similarity=0.145 Sum_probs=59.7
Q ss_pred CCeeEEEee--CCeeEEEEEEcCCCCChHHHHHHHHHhCCceEEEEEEEE-eCCEEEEEEEEEeccCccccC---HHHHH
Q 027547 116 APEIEIHEM--GSNLEVILTSGVDDQFIFYEVIRILHQDGAEILNAKFSV-VGNTIFHVIHAEIRDSMFGFG---AAKIS 189 (222)
Q Consensus 116 ~p~VeV~~~--g~~v~V~v~~~~~~~~~L~~vl~~Le~lgL~V~~a~~s~-~~~~~~~ti~~kv~~~~~~~~---~~~l~ 189 (222)
.+.|.++.. .....|.|+| .+++|+|.+|..+|..+|++|+.|.+++ .++.++.+|.+.-.++....+ .+.|.
T Consensus 719 ~~~v~~~~~~~~~~t~v~I~~-~Dr~GLfa~i~~~L~~~glnI~~A~I~t~~dg~alD~F~V~~~~g~~~~~~~~~~~l~ 797 (931)
T PRK05092 719 PLATEVRPDPARGVTEVTVLA-ADHPGLFSRIAGACAAAGANIVDARIFTTTDGRALDTFWIQDAFGRDEDEPRRLARLA 797 (931)
T ss_pred CcEEEEEecCCCCeEEEEEEe-CCCCcHHHHHHHHHHHCCCcEEEEEEEEecCCeEEEEEEEECCCCCCCCCHHHHHHHH
Confidence 355655543 2467888877 5899999999999999999999999886 688888888887655431112 44566
Q ss_pred HHHHHHHhc
Q 027547 190 ERLKGFVSG 198 (222)
Q Consensus 190 ~aL~~~I~~ 198 (222)
++|.+++.+
T Consensus 798 ~~L~~~l~~ 806 (931)
T PRK05092 798 KAIEDALSG 806 (931)
T ss_pred HHHHHHHcC
Confidence 677666643
No 53
>PRK03059 PII uridylyl-transferase; Provisional
Probab=94.98 E-value=0.22 Score=51.07 Aligned_cols=71 Identities=13% Similarity=0.145 Sum_probs=55.4
Q ss_pred CeeEEEEEEcCCCCChHHHHHHHHHhCCceEEEEEEE-EeCCEEEEEEEEEeccCcccc---CHHHHHHHHHHHHhc
Q 027547 126 SNLEVILTSGVDDQFIFYEVIRILHQDGAEILNAKFS-VVGNTIFHVIHAEIRDSMFGF---GAAKISERLKGFVSG 198 (222)
Q Consensus 126 ~~v~V~v~~~~~~~~~L~~vl~~Le~lgL~V~~a~~s-~~~~~~~~ti~~kv~~~~~~~---~~~~l~~aL~~~I~~ 198 (222)
...+|.|.| .++||+|.++.-+|..+||+|+.|.+. +.+|.++.+|.+.-.++. .. -.+.|.++|.+++.+
T Consensus 677 ~~~~v~i~~-~d~~gLFa~i~g~l~~~~l~I~~A~i~t~~~g~~ld~f~V~~~~~~-~~~~~~~~~i~~~l~~~l~~ 751 (856)
T PRK03059 677 EGLQVMVYT-PDQPDLFARICGYFDRAGFSILDARVHTTRHGYALDTFQVLDPEED-VHYRDIINLVEHELAERLAE 751 (856)
T ss_pred CeEEEEEEe-cCCCcHHHHHHHHHHHCCCceeeeEEEEcCCCeEEEEEEEeCCCCC-CChHHHHHHHHHHHHHHHcC
Confidence 467888877 589999999999999999999999995 568899999998754433 11 244577777777755
No 54
>cd04888 ACT_PheB-BS C-terminal ACT domain of a small (~147 a.a.) putative phenylalanine biosynthetic pathway protein described in Bacillus subtilis (BS) PheB (PheB-BS) and related domains. This CD includes the C-terminal ACT domain of a small (~147 a.a.) putative phenylalanine biosynthetic pathway protein described in Bacillus subtilis (BS) PheB (PheB-BS) and other related ACT domains. In B. subtilis, the upstream gene of pheB, pheA encodes prephenate dehydratase (PDT). The presumed product of the pheB gene is chorismate mutase (CM). The deduced product of the B. subtilis pheB gene, however, has no significant homology to the CM portion of the bifunctional CM-PDT of Escherichia coli. The presence of an ACT domain lends support to the prediction that these proteins function as a phenylalanine-binding regulatory protein. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=94.84 E-value=0.18 Score=35.04 Aligned_cols=48 Identities=10% Similarity=0.078 Sum_probs=36.5
Q ss_pred EEEEEcCCCCChHHHHHHHHHhCCceEEEEEEEEe-CCEEEEEEEEEecc
Q 027547 130 VILTSGVDDQFIFYEVIRILHQDGAEILNAKFSVV-GNTIFHVIHAEIRD 178 (222)
Q Consensus 130 V~v~~~~~~~~~L~~vl~~Le~lgL~V~~a~~s~~-~~~~~~ti~~kv~~ 178 (222)
+.+.+ .+++|.|.+|++.|.+++++|...+.+.. ++.....|.+.+.+
T Consensus 3 l~i~~-~d~~g~l~~I~~~la~~~inI~~i~~~~~~~~~~~i~~~v~v~~ 51 (76)
T cd04888 3 LSLLL-EHRPGVLSKVLNTIAQVRGNVLTINQNIPIHGRANVTISIDTST 51 (76)
T ss_pred EEEEe-cCCCchHHHHHHHHHHcCCCEEEEEeCCCCCCeEEEEEEEEcCc
Confidence 44444 47899999999999999999999987654 45566666666644
No 55
>PRK00275 glnD PII uridylyl-transferase; Provisional
Probab=94.79 E-value=0.24 Score=51.03 Aligned_cols=72 Identities=13% Similarity=0.072 Sum_probs=55.2
Q ss_pred CeeEEEEEEcCCCCChHHHHHHHHHhCCceEEEEEEE-EeCCEEEEEEEEEeccCcccc-C---HHHHHHHHHHHHhc
Q 027547 126 SNLEVILTSGVDDQFIFYEVIRILHQDGAEILNAKFS-VVGNTIFHVIHAEIRDSMFGF-G---AAKISERLKGFVSG 198 (222)
Q Consensus 126 ~~v~V~v~~~~~~~~~L~~vl~~Le~lgL~V~~a~~s-~~~~~~~~ti~~kv~~~~~~~-~---~~~l~~aL~~~I~~ 198 (222)
...+|.|.| .++||+|.++..+|..+|++|+.|.+. +.++.++-+|.+.-.++.... + .+.|.++|.+++.+
T Consensus 703 ~~t~V~V~~-~DrpgLFa~i~g~L~~~~lnI~~A~I~Tt~dg~alD~F~V~d~~g~~~~~~~~r~~~i~~~L~~~L~~ 779 (895)
T PRK00275 703 GGTQIFIYA-PDQHDFFAATVAAMDQLNLNIHDARIITSSSQFTLDTYIVLDDDGEPIGDNPARIEQIREGLTEALRN 779 (895)
T ss_pred CeEEEEEEe-CCCCcHHHHHHHHHHHCCCeEEEEEEEEcCCCeEEEEEEEeCCCCCCccchHHHHHHHHHHHHHHHcC
Confidence 467888877 589999999999999999999999975 567889999998866655212 2 23466777777654
No 56
>cd04894 ACT_ACR-like_1 ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). This CD includes the N-terminal ACT domain of a novel type of ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). ACR proteins, found only in Arabidopsis and Oryza, as yet, are proposed to function as novel regulatory or sensor proteins in plants. Nine ACR gene products (ACR1-8 in Arabidopsis and OsARC1-9 in Oryza) have been described, however, the ACR-like sequences in this CD are distinct from those characterized. This CD includes the Oryza sativa ACR-like protein (Os05g0113000) encoded on chromosome 5 and the Arabidopsis thaliana predicted gene product, At2g39570. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=94.65 E-value=0.25 Score=34.76 Aligned_cols=66 Identities=17% Similarity=0.124 Sum_probs=53.2
Q ss_pred EEEEEEcCCCCChHHHHHHHHHhCCceEEEEEEEEeCCEEEEEEEEEeccCccccCHHHHHHHHHHH
Q 027547 129 EVILTSGVDDQFIFYEVIRILHQDGAEILNAKFSVVGNTIFHVIHAEIRDSMFGFGAAKISERLKGF 195 (222)
Q Consensus 129 ~V~v~~~~~~~~~L~~vl~~Le~lgL~V~~a~~s~~~~~~~~ti~~kv~~~~~~~~~~~l~~aL~~~ 195 (222)
.|+|.| +++.|+-.++.+.+-+.||.|....+++.|..-+..+-+.-......+.=+.++++|..+
T Consensus 2 vitvnC-PDktGLgcdlcr~il~fGl~i~rgd~sTDGkWCyiv~wVv~~~~~~~~rW~lLK~RL~~~ 67 (69)
T cd04894 2 VITINC-PDKTGLGCDLCRIILEFGLNITRGDDSTDGRWCYIVFWVVPRPPSIKVRWDLLKNRLMSA 67 (69)
T ss_pred EEEEeC-CCccCcccHHHHHHHHhceEEEecccccCCcEEEEEEEEecCCCCCcccHHHHHHHHHhc
Confidence 367777 588999999999999999999999999999877777777655544456677888888654
No 57
>cd04880 ACT_AAAH-PDT-like ACT domain of the nonheme iron-dependent, aromatic amino acid hydroxylases (AAAH). ACT domain of the nonheme iron-dependent, aromatic amino acid hydroxylases (AAAH): Phenylalanine hydroxylases (PAH), tyrosine hydroxylases (TH) and tryptophan hydroxylases (TPH), both peripheral (TPH1) and neuronal (TPH2) enzymes. This family of enzymes shares a common catalytic mechanism, in which dioxygen is used by an active site containing a single, reduced iron atom to hydroxylate an unactivated aromatic substrate, concomitant with a two-electron oxidation of tetrahydropterin (BH4) cofactor to its quinonoid dihydropterin form. Eukaryotic AAAHs have an N-terminal ACT (regulatory) domain, a middle catalytic domain and a C-terminal domain which is responsible for the oligomeric state of the enzyme forming a domain-swapped tetrameric coiled-coil. The PAH, TH, and TPH enzymes contain highly conserved catalytic domains but distinct N-terminal ACT domains and differ in their mech
Probab=94.57 E-value=0.41 Score=33.56 Aligned_cols=59 Identities=7% Similarity=0.042 Sum_probs=40.7
Q ss_pred CCCCChHHHHHHHHHhCCceEEEEEEEEeCC-EEEEEEEEEeccCccccCHHHHHHHHHH
Q 027547 136 VDDQFIFYEVIRILHQDGAEILNAKFSVVGN-TIFHVIHAEIRDSMFGFGAAKISERLKG 194 (222)
Q Consensus 136 ~~~~~~L~~vl~~Le~lgL~V~~a~~s~~~~-~~~~ti~~kv~~~~~~~~~~~l~~aL~~ 194 (222)
.++||.|.+|++.|.++|+.+.+..+....+ ..-|.|.+.+...........+.+.|++
T Consensus 7 ~d~pG~L~~vL~~f~~~~vni~~I~Srp~~~~~~~~~f~id~~~~~~~~~~~~~l~~l~~ 66 (75)
T cd04880 7 KNKPGALAKALKVFAERGINLTKIESRPSRKGLWEYEFFVDFEGHIDDPDVKEALEELKR 66 (75)
T ss_pred CCcCCHHHHHHHHHHHCCCCEEEEEeeecCCCCceEEEEEEEECCCCCHHHHHHHHHHHH
Confidence 4689999999999999999999998886654 4556666666542111233444444444
No 58
>PRK04435 hypothetical protein; Provisional
Probab=94.49 E-value=0.27 Score=39.76 Aligned_cols=67 Identities=16% Similarity=0.193 Sum_probs=47.8
Q ss_pred eCCeeEEEEEEcCCCCChHHHHHHHHHhCCceEEEEEEEEe-CCEEEEEEEEEeccCccccCHHHHHHHHH
Q 027547 124 MGSNLEVILTSGVDDQFIFYEVIRILHQDGAEILNAKFSVV-GNTIFHVIHAEIRDSMFGFGAAKISERLK 193 (222)
Q Consensus 124 ~g~~v~V~v~~~~~~~~~L~~vl~~Le~lgL~V~~a~~s~~-~~~~~~ti~~kv~~~~~~~~~~~l~~aL~ 193 (222)
.|..+.+.+.+ .+++|.|.+|++.|.+.|++|...+.+.. ++.+..+|.+.+.+.. ...+++.++|+
T Consensus 66 ~~r~vtL~i~l-~Dr~GlLs~Il~~IA~~~aNIltI~q~i~~~g~a~vs~tVevs~~~--~~L~~Li~~L~ 133 (147)
T PRK04435 66 KGKIITLSLLL-EDRSGTLSKVLNVIAEAGGNILTINQSIPLQGRANVTISIDTSSME--GDIDELLEKLR 133 (147)
T ss_pred CCcEEEEEEEE-ecCCCHHHHHHHHHHHcCCCeEEEEEEcCCCCEEEEEEEEEeCChH--HHHHHHHHHHH
Confidence 34455666655 37899999999999999999999987653 6777778888775422 23445555444
No 59
>COG2844 GlnD UTP:GlnB (protein PII) uridylyltransferase [Posttranslational modification, protein turnover, chaperones]
Probab=94.22 E-value=0.25 Score=50.13 Aligned_cols=79 Identities=15% Similarity=0.216 Sum_probs=58.1
Q ss_pred CCeeEEEeeCC--eeEEEEEEcCCCCChHHHHHHHHHhCCceEEEEEEEEeCCEEEEEEEEEeccCccccCHHHHHHHHH
Q 027547 116 APEIEIHEMGS--NLEVILTSGVDDQFIFYEVIRILHQDGAEILNAKFSVVGNTIFHVIHAEIRDSMFGFGAAKISERLK 193 (222)
Q Consensus 116 ~p~VeV~~~g~--~v~V~v~~~~~~~~~L~~vl~~Le~lgL~V~~a~~s~~~~~~~~ti~~kv~~~~~~~~~~~l~~aL~ 193 (222)
+|.|.+..+.+ .-.+.|.+ .++||+|..|-.+|.+++|++.+|.++++|.++.-+|.+....+. .+ ...+++.|.
T Consensus 778 ~p~v~i~~t~~~~~t~lEv~a-lDRpGLLa~v~~v~~dl~l~i~~AkItT~GErveD~F~vt~~~~~-~l-~~~~~q~l~ 854 (867)
T COG2844 778 PPRVTILPTASNDKTVLEVRA-LDRPGLLAALAGVFADLGLSLHSAKITTFGERVEDVFIVTDADGQ-AL-NAELRQSLL 854 (867)
T ss_pred CCceeeccccCCCceEEEEEe-CCcccHHHHHHHHHHhcccceeeeeeccccccceeEEEEeccccc-cC-CHHHHHHHH
Confidence 35666654333 23455545 589999999999999999999999999999998888888766655 33 445555555
Q ss_pred HHHh
Q 027547 194 GFVS 197 (222)
Q Consensus 194 ~~I~ 197 (222)
+.+-
T Consensus 855 ~~ll 858 (867)
T COG2844 855 QRLL 858 (867)
T ss_pred HHHH
Confidence 5443
No 60
>PRK13011 formyltetrahydrofolate deformylase; Reviewed
Probab=93.93 E-value=0.52 Score=42.30 Aligned_cols=79 Identities=13% Similarity=0.090 Sum_probs=60.5
Q ss_pred eEEEEEEcCCCCChHHHHHHHHHhCCceEEEEEEEEeCCEEEEEEEEEeccCccccCHHHHHHHHHHHHhcccccccccC
Q 027547 128 LEVILTSGVDDQFIFYEVIRILHQDGAEILNAKFSVVGNTIFHVIHAEIRDSMFGFGAAKISERLKGFVSGCASEGEMQL 207 (222)
Q Consensus 128 v~V~v~~~~~~~~~L~~vl~~Le~lgL~V~~a~~s~~~~~~~~ti~~kv~~~~~~~~~~~l~~aL~~~I~~~~~~~~~~~ 207 (222)
+.|+|.| .++||+...|-+.|-++|++|...+..+....-+|++.+.+.... ..+.+.|+++|..+-...-..+.++-
T Consensus 8 ~vitv~G-~DrpGIVa~VT~~La~~~vNI~dls~~~~~~~~~F~m~~~~~~p~-~~~~~~L~~~L~~l~~~l~l~i~i~~ 85 (286)
T PRK13011 8 FVLTLSC-PSAAGIVAAVTGFLAEHGCYITELHSFDDRLSGRFFMRVEFHSEE-GLDEDALRAGFAPIAARFGMQWELHD 85 (286)
T ss_pred EEEEEEe-CCCCCHHHHHHHHHHhCCCCEEEeeeeecCCCCeEEEEEEEecCC-CCCHHHHHHHHHHHHHHhCcEEEEee
Confidence 4577777 589999999999999999999999998554444444666665433 46799999999998887766666664
Q ss_pred C
Q 027547 208 P 208 (222)
Q Consensus 208 ~ 208 (222)
|
T Consensus 86 ~ 86 (286)
T PRK13011 86 P 86 (286)
T ss_pred c
Confidence 4
No 61
>cd04877 ACT_TyrR N-terminal ACT domain of the TyrR protein. ACT_TyrR: N-terminal ACT domain of the TyrR protein. The TyrR protein of Escherichia coli controls the expression of a group of transcription units (TyrR regulon) whose gene products are involved in the biosynthesis or transport of the aromatic amino acids. Binding to specific DNA sequences known as TyrR boxes, the TyrR protein can either activate or repress transcription at different sigma70 promoters. Its regulatory activity occurs in response to intracellular levels of tyrosine, phenylalanine and tryptophan. The TyrR protein consists of an N-terminal region important for transcription activation with an ATP-independent aromatic amino acid binding site (contained within the ACT domain) and is involved in dimerization; a central region with an ATP binding site, an ATP-dependent aromatic amino acid binding site and is involved in hexamerization; and a helix turn helix DNA binding C-terminal region. In solution, in the absence
Probab=93.87 E-value=0.28 Score=34.48 Aligned_cols=45 Identities=13% Similarity=0.130 Sum_probs=34.4
Q ss_pred EEEEEcCCCCChHHHHHHHHHhCCceEEEEEEEEeCCEEEEEEEEEecc
Q 027547 130 VILTSGVDDQFIFYEVIRILHQDGAEILNAKFSVVGNTIFHVIHAEIRD 178 (222)
Q Consensus 130 V~v~~~~~~~~~L~~vl~~Le~lgL~V~~a~~s~~~~~~~~ti~~kv~~ 178 (222)
+.|.+. +++|+|.+|+.++.+.+..+.+.++... +. ..+..++.+
T Consensus 3 l~I~~~-dr~Gll~dI~~~i~~~~~nI~~~~~~~~-~~--i~l~i~v~~ 47 (74)
T cd04877 3 LEITCE-DRLGITQEVLDLLVEHNIDLRGIEIDPK-GR--IYLNFPTIE 47 (74)
T ss_pred EEEEEE-ccchHHHHHHHHHHHCCCceEEEEEecC-Ce--EEEEeEecC
Confidence 555563 7899999999999999999999998765 44 334555543
No 62
>cd04905 ACT_CM-PDT C-terminal ACT domain of the bifunctional chorismate mutase-prephenate dehydratase (CM-PDT) enzyme and the prephenate dehydratase (PDT) enzyme. The C-terminal ACT domain of the bifunctional chorismate mutase-prephenate dehydratase (CM-PDT) enzyme and the prephenate dehydratase (PDT) enzyme, found in plants, fungi, bacteria, and archaea. The P-protein of E. coli (CM-PDT, PheA) catalyzes the conversion of chorismate to prephenate and then the decarboxylation and dehydration to form phenylpyruvate. These are the first two steps in the biosynthesis of L-Phe and L-Tyr via the shikimate pathway in microorganisms and plants. The E. coli P-protein (CM-PDT) has three domains with an N-terminal domain with chorismate mutase activity, a middle domain with prephenate dehydratase activity, and an ACT regulatory C-terminal domain. The prephenate dehydratase enzyme has a PDT and ACT domain. The ACT domain is essential to bring about the negative allosteric regulation by L-Phe bindi
Probab=93.73 E-value=0.74 Score=32.75 Aligned_cols=56 Identities=11% Similarity=0.192 Sum_probs=41.3
Q ss_pred CCCCChHHHHHHHHHhCCceEEEEEEEEeC-CEEEEEEEEEeccCccccCHHHHHHHHHH
Q 027547 136 VDDQFIFYEVIRILHQDGAEILNAKFSVVG-NTIFHVIHAEIRDSMFGFGAAKISERLKG 194 (222)
Q Consensus 136 ~~~~~~L~~vl~~Le~lgL~V~~a~~s~~~-~~~~~ti~~kv~~~~~~~~~~~l~~aL~~ 194 (222)
.+++|.|.++++.|.++|+.+.+..+.... +...|.|.+..... .+...+.++|..
T Consensus 9 ~d~~G~L~~il~~f~~~~ini~~i~s~p~~~~~~~~~f~vd~~~~---~~~~~~~~~l~~ 65 (80)
T cd04905 9 PNKPGALYDVLGVFAERGINLTKIESRPSKGGLWEYVFFIDFEGH---IEDPNVAEALEE 65 (80)
T ss_pred CCCCCHHHHHHHHHHHCCcCEEEEEEEEcCCCCceEEEEEEEECC---CCCHHHHHHHHH
Confidence 478999999999999999999999877653 45667777776642 234555555543
No 63
>cd04876 ACT_RelA-SpoT ACT domain found C-terminal of the RelA/SpoT domains. ACT_RelA-SpoT: the ACT domain found C-terminal of the RelA/SpoT domains. Enzymes of the Rel/Spo family enable bacteria to survive prolonged periods of nutrient limitation by controlling guanosine-3'-diphosphate-5'-(tri)diphosphate ((p)ppGpp) production and subsequent rRNA repression (stringent response). Both the synthesis of (p)ppGpp from ATP and GDP(GTP), and its hydrolysis to GDP(GTP) and pyrophosphate, are catalyzed by Rel/Spo proteins. In Escherichia coli and its close relatives, the metabolism of (p)ppGpp is governed by two homologous proteins, RelA and SpoT. The RelA protein catalyzes (p)ppGpp synthesis in a reaction requiring its binding to ribosomes bearing codon-specified uncharged tRNA. The major role of the SpoT protein is the breakdown of (p)ppGpp by a manganese-dependent (p)ppGpp pyrophosphohydrolase activity. Although the stringent response appears to be tightly regulated by these two enzymes i
Probab=93.58 E-value=0.61 Score=30.04 Aligned_cols=43 Identities=14% Similarity=0.251 Sum_probs=33.8
Q ss_pred CCCCChHHHHHHHHHhCCceEEEEEEEEeC-CEEEEEEEEEecc
Q 027547 136 VDDQFIFYEVIRILHQDGAEILNAKFSVVG-NTIFHVIHAEIRD 178 (222)
Q Consensus 136 ~~~~~~L~~vl~~Le~lgL~V~~a~~s~~~-~~~~~ti~~kv~~ 178 (222)
.++++.+.++++.|.++++++.+......+ +...+.+..++.+
T Consensus 6 ~~~~~~l~~i~~~l~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~ 49 (71)
T cd04876 6 IDRPGLLADITTVIAEEKINILSVNTRTDDDGLATIRLTLEVRD 49 (71)
T ss_pred eccCcHHHHHHHHHHhCCCCEEEEEeEECCCCEEEEEEEEEECC
Confidence 478999999999999999999999887655 5555556665543
No 64
>PRK06027 purU formyltetrahydrofolate deformylase; Reviewed
Probab=92.95 E-value=0.94 Score=40.60 Aligned_cols=76 Identities=16% Similarity=0.170 Sum_probs=56.6
Q ss_pred eEEEEEEcCCCCChHHHHHHHHHhCCceEEEEEEEE--eCCEEEEEEEEEeccCccccCHHHHHHHHHHHHhcccccccc
Q 027547 128 LEVILTSGVDDQFIFYEVIRILHQDGAEILNAKFSV--VGNTIFHVIHAEIRDSMFGFGAAKISERLKGFVSGCASEGEM 205 (222)
Q Consensus 128 v~V~v~~~~~~~~~L~~vl~~Le~lgL~V~~a~~s~--~~~~~~~ti~~kv~~~~~~~~~~~l~~aL~~~I~~~~~~~~~ 205 (222)
+.|++.| .++||+...|-++|-++|++|...+.++ .++.+...+.+.+.. . ..+.++|.++|.++-...-..+.+
T Consensus 7 ~vitv~G-~DrpGIVa~Vt~~La~~g~NI~d~s~~~~~~~g~F~m~i~v~~~~-~-~~~~~~L~~~L~~l~~~l~l~i~l 83 (286)
T PRK06027 7 YVLTLSC-PDRPGIVAAVSNFLYEHGGNIVDADQFVDPETGRFFMRVEFEGDG-L-IFNLETLRADFAALAEEFEMDWRL 83 (286)
T ss_pred EEEEEEC-CCCCcHHHHHHHHHHHCCCCEEEceeEEcCCCCeEEEEEEEEeCC-C-CCCHHHHHHHHHHHHHHhCCEEEE
Confidence 4566666 5899999999999999999999999998 777544444444422 1 356889999998887776655544
Q ss_pred c
Q 027547 206 Q 206 (222)
Q Consensus 206 ~ 206 (222)
+
T Consensus 84 ~ 84 (286)
T PRK06027 84 L 84 (286)
T ss_pred c
Confidence 4
No 65
>cd04881 ACT_HSDH-Hom ACT_HSDH_Hom CD includes the C-terminal ACT domain of the NAD(P)H-dependent, homoserine dehydrogenase (HSDH) and related domains. The ACT_HSDH_Hom CD includes the C-terminal ACT domain of the NAD(P)H-dependent, homoserine dehydrogenase (HSDH) encoded by the hom gene of Bacillus subtilis and other related sequences. HSDH reduces aspartate semi-aldehyde to the amino acid homoserine, one that is required for the biosynthesis of Met, Thr, and Ile from Asp. Neither the enzyme nor the aspartate pathway is found in the animal kingdom. This mostly bacterial HSDH group has a C-terminal ACT domain and is believed to be involved in enzyme regulation. A C-terminal deletion in the Corynebacterium glutamicum HSDH abolished allosteric inhibition by L-threonine. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=92.92 E-value=0.55 Score=32.00 Aligned_cols=48 Identities=23% Similarity=0.168 Sum_probs=36.2
Q ss_pred EEEEEEcCCCCChHHHHHHHHHhCCceEEEEEEEEe-C-CEEEEEEEEEec
Q 027547 129 EVILTSGVDDQFIFYEVIRILHQDGAEILNAKFSVV-G-NTIFHVIHAEIR 177 (222)
Q Consensus 129 ~V~v~~~~~~~~~L~~vl~~Le~lgL~V~~a~~s~~-~-~~~~~ti~~kv~ 177 (222)
.+.|.+ .+++|.|.+++..|.+.++.+.+.+.... + +.....+...+.
T Consensus 2 yl~i~~-~d~~g~l~~i~~~l~~~~i~I~~~~~~~~~~~~~~~~~i~~~~~ 51 (79)
T cd04881 2 YLRLTV-KDKPGVLAKITGILAEHGISIESVIQKEADGGETAPVVIVTHET 51 (79)
T ss_pred EEEEEe-CCCCcHHHHHHHHHHHcCCCeEEEEEcccCCCCceeEEEEEccC
Confidence 355655 37899999999999999999999987654 3 556566666544
No 66
>cd04878 ACT_AHAS N-terminal ACT domain of the Escherichia coli IlvH-like regulatory subunit of acetohydroxyacid synthase (AHAS). ACT_AHAS: N-terminal ACT domain of the Escherichia coli IlvH-like regulatory subunit of acetohydroxyacid synthase (AHAS). AHAS catalyses the first common step in the biosynthesis of the three branched-chain amino acids. The first step involves the condensation of either pyruvate or 2-ketobutyrate with the two-carbon hydroxyethyl fragment derived from another pyruvate molecule, covalently bound to the coenzyme thiamine diphosphate. Bacterial AHASs generally consist of regulatory and catalytic subunits. The effector (valine) binding sites are proposed to be located in two symmetrically related positions in the interface between a pair of N-terminal ACT domains with the C-terminal domain of IlvH contacting the catalytic dimer. Plants Arabidopsis and Oryza have tandem IlvH subunits; both the first and second ACT domain sequences are present in this CD. Members of
Probab=92.91 E-value=0.94 Score=30.21 Aligned_cols=41 Identities=10% Similarity=0.037 Sum_probs=33.4
Q ss_pred CCCCChHHHHHHHHHhCCceEEEEEEEEe--CCEEEEEEEEEe
Q 027547 136 VDDQFIFYEVIRILHQDGAEILNAKFSVV--GNTIFHVIHAEI 176 (222)
Q Consensus 136 ~~~~~~L~~vl~~Le~lgL~V~~a~~s~~--~~~~~~ti~~kv 176 (222)
.+++|.|.+++..|.++++.+.+.+.... ++...+.|.+.+
T Consensus 8 ~d~~g~l~~i~~~l~~~~~~i~~~~~~~~~~~~~~~~~~~~~~ 50 (72)
T cd04878 8 ENEPGVLNRISGLFARRGFNIESLTVGPTEDPGISRITIVVEG 50 (72)
T ss_pred cCCCcHHHHHHHHHHhCCCCEEEEEeeecCCCCeEEEEEEEEC
Confidence 47899999999999999999999987764 455666666664
No 67
>cd04884 ACT_CBS C-terminal ACT domain of the cystathionine beta-synthase (CBS) domain protein found in Thermotoga maritima, Tm0935, and delta proteobacteria. This CD includes the C-terminal ACT domain of the cystathionine beta-synthase (CBS) domain protein found in Thermotoga maritima, Tm0935, and delta proteobacteria. This protein has two N-terminal tandem CBS domains and a single C-terminal ACT domain. The CBS domain is found in a wide range of proteins, often in tandem arrangements and together with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=92.73 E-value=1.1 Score=31.11 Aligned_cols=41 Identities=15% Similarity=0.032 Sum_probs=31.1
Q ss_pred CCCCChHHHHHHHHHhCCceEEEEEEEEe---CCEEEEEEEEEe
Q 027547 136 VDDQFIFYEVIRILHQDGAEILNAKFSVV---GNTIFHVIHAEI 176 (222)
Q Consensus 136 ~~~~~~L~~vl~~Le~lgL~V~~a~~s~~---~~~~~~ti~~kv 176 (222)
.++||.|.++++.|.++|+.|++...... .+.-...+++..
T Consensus 7 ~d~pG~L~~l~~~i~~~g~nI~~i~~~~~~~~~~~~~~~v~v~~ 50 (72)
T cd04884 7 EDKPGTLKPVVDTLREFNARIISILTAFEDAPDGMRRVFIRVTP 50 (72)
T ss_pred cCCCccHHHHHHHHHHCCCeEEEEEeccccCCCCccEEEEEEEE
Confidence 58999999999999999999999987754 233334444444
No 68
>TIGR00655 PurU formyltetrahydrofolate deformylase. This model describes formyltetrahydrofolate deformylases. The enzyme is a homohexamer. Sequences from a related enzyme formyl tetrahydrofolate-specific enzyme, phosphoribosylglycinamide formyltransferase, serve as an outgroup for phylogenetic analysis. Putative members of this family, scoring below the trusted cutoff, include a sequence from Rhodobacter capsulatus that lacks an otherwise conserved C-terminal region.
Probab=92.69 E-value=0.78 Score=41.08 Aligned_cols=68 Identities=10% Similarity=0.251 Sum_probs=50.9
Q ss_pred EEEEEcCCCCChHHHHHHHHHhCCceEEEEEEEEeC--CEEEEEEEEEeccCccccCHHHHHHHHHH-HHhccc
Q 027547 130 VILTSGVDDQFIFYEVIRILHQDGAEILNAKFSVVG--NTIFHVIHAEIRDSMFGFGAAKISERLKG-FVSGCA 200 (222)
Q Consensus 130 V~v~~~~~~~~~L~~vl~~Le~lgL~V~~a~~s~~~--~~~~~ti~~kv~~~~~~~~~~~l~~aL~~-~I~~~~ 200 (222)
|++.| ++++|+...|-..|-++|.+|+.++....+ ++++..+.+.+.. ...+.++++++|.. +-....
T Consensus 3 itv~g-~D~~GIVA~Vt~~La~~g~NI~d~sq~~~~~~~~F~mr~~v~~~~--~~~~~~~l~~~l~~~~~~~~~ 73 (280)
T TIGR00655 3 LLVSC-PDQKGLVAAISTFIAKHGANIISNDQHTDPETGRFFMRVEFQLEG--FRLEESSLLAAFKSALAEKFE 73 (280)
T ss_pred EEEEC-CCCCChHHHHHHHHHHCCCCEEeeeEEEcCCCCeEEEEEEEEeCC--CCCCHHHHHHHHHHHHHHHhC
Confidence 56666 589999999999999999999999988764 5555444444432 23678899999988 555443
No 69
>cd04882 ACT_Bt0572_2 C-terminal ACT domain of a novel protein composed of just two ACT domains. Included in this CD is the C-terminal ACT domain of a novel protein composed of just two ACT domains, as seen in the yet uncharacterized structure (pdb 2F06) of the Bt0572 protein from Bacteroides thetaiotaomicron and related proteins. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=92.63 E-value=0.89 Score=30.26 Aligned_cols=51 Identities=24% Similarity=0.231 Sum_probs=36.1
Q ss_pred CCCCChHHHHHHHHHhCCceEEEEEEEEeC--CEEEEEEEEEeccCccccCHHHHHHHHHH
Q 027547 136 VDDQFIFYEVIRILHQDGAEILNAKFSVVG--NTIFHVIHAEIRDSMFGFGAAKISERLKG 194 (222)
Q Consensus 136 ~~~~~~L~~vl~~Le~lgL~V~~a~~s~~~--~~~~~ti~~kv~~~~~~~~~~~l~~aL~~ 194 (222)
.++||.|.+++..|.++|+.|.+...+... +...+.++++ . .+++.+.|++
T Consensus 7 ~d~pG~L~~i~~~l~~~~~nI~~i~~~~~~~~~~~~v~~~ve--~------~~~~~~~L~~ 59 (65)
T cd04882 7 PDKPGGLHEILQILSEEGINIEYMYAFVEKKGGKALLIFRTE--D------IEKAIEVLQE 59 (65)
T ss_pred CCCCcHHHHHHHHHHHCCCChhheEEEccCCCCeEEEEEEeC--C------HHHHHHHHHH
Confidence 488999999999999999999888765443 4555544443 1 4455555554
No 70
>cd04874 ACT_Af1403 N-terminal ACT domain of the yet uncharacterized, small (~133 a.a.), putative amino acid binding protein, Af1403, and related domains. This CD includes the N-terminal ACT domain of the yet uncharacterized, small (~133 a.a.), putative amino acid binding protein, Af1403, from Archaeoglobus fulgidus and other related archeal ACT domains. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=92.39 E-value=1.5 Score=29.36 Aligned_cols=43 Identities=7% Similarity=0.133 Sum_probs=32.3
Q ss_pred EEEEEcCCCCChHHHHHHHHHhCCceEEEEEEEEeC-CEEEEEEE
Q 027547 130 VILTSGVDDQFIFYEVIRILHQDGAEILNAKFSVVG-NTIFHVIH 173 (222)
Q Consensus 130 V~v~~~~~~~~~L~~vl~~Le~lgL~V~~a~~s~~~-~~~~~ti~ 173 (222)
+.+.+ .+++|.|.+++..|.++++.+.+.+....+ +.....+.
T Consensus 3 l~i~~-~d~~g~l~~i~~~l~~~~~~i~~~~~~~~~~~~~~~~i~ 46 (72)
T cd04874 3 LSIIA-EDKPGVLRDLTGVIAEHGGNITYTQQFIEREGKARIYME 46 (72)
T ss_pred EEEEe-CCCCChHHHHHHHHHhCCCCEEEEEEeccCCCeEEEEEE
Confidence 44545 488999999999999999999998877653 44443333
No 71
>PRK08577 hypothetical protein; Provisional
Probab=92.21 E-value=1.8 Score=34.16 Aligned_cols=65 Identities=22% Similarity=0.307 Sum_probs=45.8
Q ss_pred eeEEEEEEcCCCCChHHHHHHHHHhCCceEEEEEEEEe--CCEEEEEEEEEeccCccccCHHHHHHHHHH
Q 027547 127 NLEVILTSGVDDQFIFYEVIRILHQDGAEILNAKFSVV--GNTIFHVIHAEIRDSMFGFGAAKISERLKG 194 (222)
Q Consensus 127 ~v~V~v~~~~~~~~~L~~vl~~Le~lgL~V~~a~~s~~--~~~~~~ti~~kv~~~~~~~~~~~l~~aL~~ 194 (222)
.+.+.+.+ .+++|.|.++++.|.+++..+.+.+..+. ++.+...+.+.+.+.. ...+++.++|++
T Consensus 56 ~~~I~V~~-~Dr~GvLa~I~~~l~~~~inI~~i~~~~~~~~~~~~i~l~vev~~~~--~~l~~l~~~L~~ 122 (136)
T PRK08577 56 LVEIELVV-EDRPGVLAKITGLLAEHGVDILATECEELKRGELAECVIIVDLSKSD--IDLEELEEELKK 122 (136)
T ss_pred EEEEEEEE-cCCCCHHHHHHHHHHHCCCCEEEEEEEEecCCCEEEEEEEEEeCCch--hhHHHHHHHHHc
Confidence 45666666 48899999999999999999999887765 3455556677776531 234555555543
No 72
>COG3830 ACT domain-containing protein [Signal transduction mechanisms]
Probab=92.20 E-value=0.13 Score=38.59 Aligned_cols=79 Identities=18% Similarity=0.222 Sum_probs=63.3
Q ss_pred EEEEEcCCCCChHHHHHHHHHhCCceEEEEEEEEeCCEEEEEEEEEeccCccccCHHHHHHHHHHHHhcccccccccCCC
Q 027547 130 VILTSGVDDQFIFYEVIRILHQDGAEILNAKFSVVGNTIFHVIHAEIRDSMFGFGAAKISERLKGFVSGCASEGEMQLPE 209 (222)
Q Consensus 130 V~v~~~~~~~~~L~~vl~~Le~lgL~V~~a~~s~~~~~~~~ti~~kv~~~~~~~~~~~l~~aL~~~I~~~~~~~~~~~~~ 209 (222)
|+| .+.+|+|....|-.+|-++|+++++.+-+..++++...+.+.... ...+...+++.|......--..+-||.-+
T Consensus 6 ITV-~GkDr~GIva~is~vLAe~~vNIldisQtvm~~~ftm~~lV~~~~--~~~d~~~lr~~l~~~~~~lgv~V~vq~ed 82 (90)
T COG3830 6 ITV-IGKDRVGIVAAVSRVLAEHGVNILDISQTVMDGFFTMIMLVDISK--EVVDFAALRDELAAEGKKLGVDVRVQRED 82 (90)
T ss_pred EEE-EcCCCCchhHHHHHHHHHcCCcEEEHHHHHHhhhceeeeEEcCCh--HhccHHHHHHHHHHHHHhcCcEEEEeeHH
Confidence 444 457899999999999999999999999998888776666665544 34789999999999998888777777444
Q ss_pred CC
Q 027547 210 LW 211 (222)
Q Consensus 210 ~~ 211 (222)
+.
T Consensus 83 ~f 84 (90)
T COG3830 83 IF 84 (90)
T ss_pred HH
Confidence 43
No 73
>cd02116 ACT ACT domains are commonly involved in specifically binding an amino acid or other small ligand leading to regulation of the enzyme. Members of this CD belong to the superfamily of ACT regulatory domains. Pairs of ACT domains are commonly involved in specifically binding an amino acid or other small ligand leading to regulation of the enzyme. The ACT domain has been detected in a number of diverse proteins; some of these proteins are involved in amino acid and purine biosynthesis, phenylalanine hydroxylation, regulation of bacterial metabolism and transcription, and many remain to be characterized. ACT domain-containing enzymes involved in amino acid and purine synthesis are in many cases allosteric enzymes with complex regulation enforced by the binding of ligands. The ACT domain is commonly involved in the binding of a small regulatory molecule, such as the amino acids L-Ser and L-Phe in the case of D-3-phosphoglycerate dehydrogenase and the bifunctional chorismate mutase-p
Probab=92.06 E-value=1.2 Score=27.00 Aligned_cols=34 Identities=18% Similarity=0.308 Sum_probs=28.1
Q ss_pred EEEEcCCCCChHHHHHHHHHhCCceEEEEEEEEeC
Q 027547 131 ILTSGVDDQFIFYEVIRILHQDGAEILNAKFSVVG 165 (222)
Q Consensus 131 ~v~~~~~~~~~L~~vl~~Le~lgL~V~~a~~s~~~ 165 (222)
.+.+ .++++.+.+++..|...++.+..+.....+
T Consensus 2 ~i~~-~~~~~~l~~i~~~l~~~~~~i~~~~~~~~~ 35 (60)
T cd02116 2 TVSG-PDRPGLLAKVLSVLAEAGINITSIEQRTSG 35 (60)
T ss_pred EEEe-cCCCchHHHHHHHHHHCCCcEEEEEeEEcC
Confidence 3444 367899999999999999999999987654
No 74
>cd04908 ACT_Bt0572_1 N-terminal ACT domain of a novel protein composed almost entirely of two tandem ACT domains. Included in this CD is the N-terminal ACT domain of a novel protein composed almost entirely of two tandem ACT domains as seen in the uncharacterized structure (pdb 2F06) of the Bt0572 protein from Bacteroides thetaiotaomicron and related ACT domains. These tandem ACT domain proteins belong to the superfamily of ACT regulatory domains.
Probab=91.78 E-value=2.4 Score=28.87 Aligned_cols=51 Identities=18% Similarity=0.176 Sum_probs=36.6
Q ss_pred CCCCChHHHHHHHHHhCCceEEEEEEEEeCCEEEEEEEEEeccCccccCHHHHHHHHHH
Q 027547 136 VDDQFIFYEVIRILHQDGAEILNAKFSVVGNTIFHVIHAEIRDSMFGFGAAKISERLKG 194 (222)
Q Consensus 136 ~~~~~~L~~vl~~Le~lgL~V~~a~~s~~~~~~~~ti~~kv~~~~~~~~~~~l~~aL~~ 194 (222)
.++||.|.+|++.|.+.|+.|.+.-....++. ..++.... +.+.+.+.|++
T Consensus 9 ~d~pG~La~v~~~l~~~~inI~~i~~~~~~~~--~~~rl~~~------~~~~~~~~L~~ 59 (66)
T cd04908 9 ENKPGRLAAVTEILSEAGINIRALSIADTSEF--GILRLIVS------DPDKAKEALKE 59 (66)
T ss_pred cCCCChHHHHHHHHHHCCCCEEEEEEEecCCC--CEEEEEEC------CHHHHHHHHHH
Confidence 48899999999999999999999987766554 44444442 24455555543
No 75
>cd04885 ACT_ThrD-I Tandem C-terminal ACT domains of threonine dehydratase I (ThrD-I; L-threonine hydrolyase). This CD includes each of two tandem C-terminal ACT domains of threonine dehydratase I (ThrD-I; L-threonine hydrolyase) which catalyzes the committed step in branched chain amino acid biosynthesis in plants and microorganisms, the pyridoxal 5'-phosphate (PLP)-dependent dehydration/deamination of L-threonine (or L-serine) to 2-ketobutyrate (or pyruvate). ThrD-I is a cooperative, feedback-regulated (isoleucine and valine) allosteric enzyme that forms a tetramer and contains four pyridoxal phosphate moieties. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=91.46 E-value=1.3 Score=30.56 Aligned_cols=55 Identities=15% Similarity=0.215 Sum_probs=38.6
Q ss_pred CCCCChHHHHHHHHHhCCceEEEEEEEEeC-CEEEEEEEEEeccCccccCHHHHHHHHHH
Q 027547 136 VDDQFIFYEVIRILHQDGAEILNAKFSVVG-NTIFHVIHAEIRDSMFGFGAAKISERLKG 194 (222)
Q Consensus 136 ~~~~~~L~~vl~~Le~lgL~V~~a~~s~~~-~~~~~ti~~kv~~~~~~~~~~~l~~aL~~ 194 (222)
+++||.|.++++.|.+ |.+|...+....+ +.....+.+++.+. ....++.++|.+
T Consensus 6 pdkPG~l~~~~~~i~~-~~nI~~~~~~~~~~~~~~v~v~ie~~~~---~~~~~i~~~L~~ 61 (68)
T cd04885 6 PERPGALKKFLELLGP-PRNITEFHYRNQGGDEARVLVGIQVPDR---EDLAELKERLEA 61 (68)
T ss_pred CCCCCHHHHHHHHhCC-CCcEEEEEEEcCCCCceEEEEEEEeCCH---HHHHHHHHHHHH
Confidence 5799999999999999 9999999887543 33444455555542 245566666654
No 76
>cd04883 ACT_AcuB C-terminal ACT domain of the Bacillus subtilis acetoin utilization protein, AcuB. This CD includes the C-terminal ACT domain of the Bacillus subtilis acetoin utilization protein, AcuB. AcuB is putatively involved in the anaerobic catabolism of acetoin, and related proteins. Studies report the induction of AcuB by nitrate respiration and also by fermentation. Since acetoin can be secreted and later serve as a source of carbon, it has been proposed that, during anaerobic growth when other carbon sources are exhausted, the induction of the AcuB protein results in acetoin catabolism. AcuB-like proteins have two N-terminal tandem CBS domains and a single C-terminal ACT domain. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=91.37 E-value=2.9 Score=28.47 Aligned_cols=59 Identities=14% Similarity=0.178 Sum_probs=41.2
Q ss_pred EEEEEEcCCCCChHHHHHHHHHhCCceEEEEEEEEe--CCEEEEEEEEEeccCccccCHHHHHHHHHH
Q 027547 129 EVILTSGVDDQFIFYEVIRILHQDGAEILNAKFSVV--GNTIFHVIHAEIRDSMFGFGAAKISERLKG 194 (222)
Q Consensus 129 ~V~v~~~~~~~~~L~~vl~~Le~lgL~V~~a~~s~~--~~~~~~ti~~kv~~~~~~~~~~~l~~aL~~ 194 (222)
.+.+.. .++||.|.++++.|.++|+.+.+...... ++...+.|++... +.+++.+.|++
T Consensus 3 ~~~v~~-~d~pG~l~~i~~~l~~~~inI~~i~~~~~~~~~~~~v~i~v~~~------~~~~~~~~L~~ 63 (72)
T cd04883 3 QIEVRV-PDRPGQLADIAAIFKDRGVNIVSVLVYPSKEEDNKILVFRVQTM------NPRPIIEDLRR 63 (72)
T ss_pred EEEEEE-CCCCCHHHHHHHHHHHcCCCEEEEEEeccCCCCeEEEEEEEecC------CHHHHHHHHHH
Confidence 344444 47899999999999999999998865533 3566666776542 24466666654
No 77
>cd04879 ACT_3PGDH-like ACT_3PGDH-like CD includes the C-terminal ACT (regulatory) domain of D-3-phosphoglycerate dehydrogenase (3PGDH). ACT_3PGDH-like: The ACT_3PGDH-like CD includes the C-terminal ACT (regulatory) domain of D-3-phosphoglycerate dehydrogenase (3PGDH), with or without an extended C-terminal (xct) region found in various bacteria, archaea, fungi, and plants. 3PGDH is an enzyme that belongs to the D-isomer specific, 2-hydroxyacid dehydrogenase family and catalyzes the oxidation of D-3-phosphoglycerate to 3- phosphohydroxypyruvate, which is the first step in the biosynthesis of L-serine, using NAD+ as the oxidizing agent. In bacteria, 3PGDH is feedback controlled by the end product L-serine in an allosteric manner. In the Escherichia coli homotetrameric enzyme, the interface at adjacent ACT (regulatory) domains couples to create an extended beta-sheet. Each regulatory interface forms two serine-binding sites. The mechanism by which serine transmits inhibition to the active
Probab=91.30 E-value=1.9 Score=28.55 Aligned_cols=53 Identities=19% Similarity=0.176 Sum_probs=39.0
Q ss_pred CCCCChHHHHHHHHHhCCceEEEEEEEEeC--CEEEEEEEEEeccCccccCHHHHHHHHHH
Q 027547 136 VDDQFIFYEVIRILHQDGAEILNAKFSVVG--NTIFHVIHAEIRDSMFGFGAAKISERLKG 194 (222)
Q Consensus 136 ~~~~~~L~~vl~~Le~lgL~V~~a~~s~~~--~~~~~ti~~kv~~~~~~~~~~~l~~aL~~ 194 (222)
.+++|.+.+++..|.+.++.|.+..+.... +...+.+.+ .+ . ....+.+.|++
T Consensus 7 ~d~~g~l~~i~~~l~~~~~nI~~~~~~~~~~~~~~~~~~~v--~~-~---~~~~l~~~l~~ 61 (71)
T cd04879 7 KDVPGVIGKVGTILGEHGINIAAMQVGRKEKGGIAYMVLDV--DS-P---VPEEVLEELKA 61 (71)
T ss_pred cCCCCHHHHHHHHHHhcCCCeeeEEEeccCCCCEEEEEEEc--CC-C---CCHHHHHHHHc
Confidence 478999999999999999999999987654 566666655 22 1 34556665554
No 78
>PRK13010 purU formyltetrahydrofolate deformylase; Reviewed
Probab=90.15 E-value=1.8 Score=38.99 Aligned_cols=73 Identities=10% Similarity=0.067 Sum_probs=52.9
Q ss_pred eEEEEEEcCCCCChHHHHHHHHHhCCceEEEEEEE--EeCCEEEEEEEEEeccCccccCHHHHHHHHHHHHhccccc
Q 027547 128 LEVILTSGVDDQFIFYEVIRILHQDGAEILNAKFS--VVGNTIFHVIHAEIRDSMFGFGAAKISERLKGFVSGCASE 202 (222)
Q Consensus 128 v~V~v~~~~~~~~~L~~vl~~Le~lgL~V~~a~~s--~~~~~~~~ti~~kv~~~~~~~~~~~l~~aL~~~I~~~~~~ 202 (222)
+-|+++| ++++|+...|-+.|-++|++|+.++.. +..+.++..+........ ..+.+.++++|..+-.....+
T Consensus 10 ~iitv~G-~Dr~GIVA~Vs~~Lae~g~NI~disq~~d~~~~~ffm~i~~~~~~~~-~~~~~~l~~~l~~l~~~l~l~ 84 (289)
T PRK13010 10 YVLTLAC-PSAPGIVAAVSGFLAEKGCYIVELTQFDDDESGRFFMRVSFHAQSAE-AASVDTFRQEFQPVAEKFDMQ 84 (289)
T ss_pred EEEEEEC-CCCCCcHHHHHHHHHHCCCCEEecccccccccCcEEEEEEEEcCCCC-CCCHHHHHHHHHHHHHHhCCe
Confidence 3477777 589999999999999999999999986 333444444433322222 568899999999887765433
No 79
>PLN02705 beta-amylase
Probab=89.96 E-value=0.45 Score=46.87 Aligned_cols=28 Identities=21% Similarity=0.286 Sum_probs=23.7
Q ss_pred CchhhhhhHHHHHHHHHHHHHHHHHHhc
Q 027547 23 SPTKIERKTIEKNRRDQMKNLYSTLKSL 50 (222)
Q Consensus 23 ~~~~~~h~~~ER~RR~~mn~~~~~LrsL 50 (222)
...|...+..||+||.--...|.-||.+
T Consensus 82 ~~e~e~~~~rer~rrai~~ki~aglr~~ 109 (681)
T PLN02705 82 EKEKERTKLRERHRRAITSRMLAGLRQY 109 (681)
T ss_pred hhhhhhhHHHHHHHHHHHHHHHHHHHhc
Confidence 3567888899999999988889888875
No 80
>PF13710 ACT_5: ACT domain; PDB: 2FGC_A 2PC6_A 2F1F_B.
Probab=89.85 E-value=0.82 Score=31.63 Aligned_cols=56 Identities=9% Similarity=0.096 Sum_probs=39.9
Q ss_pred CCCChHHHHHHHHHhCCceEEEEEEEE--eCCEEEEEEEEEeccCccccCHHHHHHHHHHHH
Q 027547 137 DDQFIFYEVIRILHQDGAEILNAKFSV--VGNTIFHVIHAEIRDSMFGFGAAKISERLKGFV 196 (222)
Q Consensus 137 ~~~~~L~~vl~~Le~lgL~V~~a~~s~--~~~~~~~ti~~kv~~~~~~~~~~~l~~aL~~~I 196 (222)
++||.|.+|+..+..-|+.|-+.++.. .++..-++|.+...+ ...+.+..-|.+++
T Consensus 1 n~~GvL~Ri~~vf~rRg~nI~sl~v~~~~~~~~~riti~v~~~~----~~i~~l~~Ql~Kli 58 (63)
T PF13710_consen 1 NQPGVLNRITGVFRRRGFNIESLSVGPTEDPGISRITIVVSGDD----REIEQLVKQLEKLI 58 (63)
T ss_dssp SSTTHHHHHHHHHHTTT-EECEEEEEE-SSTTEEEEEEEEES-C----CHHHHHHHHHHCST
T ss_pred CCcHHHHHHHHHHhcCCeEEeeEEeeecCCCCEEEEEEEEeeCc----hhHHHHHHHHhccC
Confidence 468999999999999999999999997 455666666665322 34566666665544
No 81
>COG4492 PheB ACT domain-containing protein [General function prediction only]
Probab=89.64 E-value=2.1 Score=34.55 Aligned_cols=58 Identities=14% Similarity=0.190 Sum_probs=48.6
Q ss_pred CCCCChHHHHHHHHHhCCceEEEEEEE-EeCCEEEEEEEEEeccCccccCHHHHHHHHHHH
Q 027547 136 VDDQFIFYEVIRILHQDGAEILNAKFS-VVGNTIFHVIHAEIRDSMFGFGAAKISERLKGF 195 (222)
Q Consensus 136 ~~~~~~L~~vl~~Le~lgL~V~~a~~s-~~~~~~~~ti~~kv~~~~~~~~~~~l~~aL~~~ 195 (222)
.++-|.|+++|+++-+.++.|++.+-+ ..++++-.+|....... ..+++.+.++|+++
T Consensus 80 edr~G~LS~vLd~iA~~~~nvLTI~Q~ipl~g~Anvtlsi~~ssm--~~~V~~ii~kl~k~ 138 (150)
T COG4492 80 EDRVGILSDVLDVIAREEINVLTIHQTIPLQGRANVTLSIDTSSM--EKDVDKIIEKLRKV 138 (150)
T ss_pred hhhhhhHHHHHHHHHHhCCcEEEEecccccCceeeEEEEEEchhh--hhhHHHHHHHHhcc
Confidence 378899999999999999999999977 67999888888877643 46788888888764
No 82
>cd04909 ACT_PDH-BS C-terminal ACT domain of the monofunctional, NAD dependent, prephenate dehydrogenase (PDH). The C-terminal ACT domain of the monofunctional, NAD dependent, prephenate dehydrogenase (PDH) enzyme that catalyzes the formation of 4-hydroxyphenylpyruvate from prephenate, found in Bacillus subtilis (BS) and other Firmicutes, Deinococci, and Bacteroidetes. PDH is the first enzyme in the aromatic amino acid pathway specific for the biosynthesis of tyrosine. This enzyme is feedback-inhibited by tyrosine in B. subtilis and other microorganisms. Both phenylalanine and tryptophan have been shown to be inhibitors of this activity in B. subtilis. Bifunctional chorismate mutase-PDH (TyrA) enzymes such as those seen in Escherichia coli do not contain an ACT domain. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=89.61 E-value=3.2 Score=28.21 Aligned_cols=34 Identities=24% Similarity=0.308 Sum_probs=27.8
Q ss_pred EEEEEcCCCCChHHHHHHHHHhCCceEEEEEEEEe
Q 027547 130 VILTSGVDDQFIFYEVIRILHQDGAEILNAKFSVV 164 (222)
Q Consensus 130 V~v~~~~~~~~~L~~vl~~Le~lgL~V~~a~~s~~ 164 (222)
+.+.+ .++||.|.++++.|.++|+.+.+......
T Consensus 4 ~~v~~-~d~~G~L~~l~~~l~~~~i~i~~~~~~~~ 37 (69)
T cd04909 4 LYVDV-PDEPGVIAEVTQILGDAGISIKNIEILEI 37 (69)
T ss_pred EEEEc-CCCCCHHHHHHHHHHHcCCCceeeEeEEe
Confidence 44444 58899999999999999999998876654
No 83
>PRK07334 threonine dehydratase; Provisional
Probab=89.30 E-value=2.3 Score=39.63 Aligned_cols=63 Identities=14% Similarity=0.168 Sum_probs=46.4
Q ss_pred eEEEEEEcCCCCChHHHHHHHHHhCCceEEEEEEEEe-----CCEEEEEEEEEeccCccccCHHHHHHHHHH
Q 027547 128 LEVILTSGVDDQFIFYEVIRILHQDGAEILNAKFSVV-----GNTIFHVIHAEIRDSMFGFGAAKISERLKG 194 (222)
Q Consensus 128 v~V~v~~~~~~~~~L~~vl~~Le~lgL~V~~a~~s~~-----~~~~~~ti~~kv~~~~~~~~~~~l~~aL~~ 194 (222)
+.+.|.+ .+++|+|.+|+.+|.+.++.|.++++... ++.....|..++.+.. .-..|..+|++
T Consensus 327 v~l~I~~-~dr~GlL~dI~~~is~~~~nI~~v~~~~~~~~~~~~~~~i~l~i~V~d~~---~L~~vi~~Lr~ 394 (403)
T PRK07334 327 ARLRVDI-RDRPGALARVTALIGEAGANIIEVSHQRLFTDLPAKGAELELVIETRDAA---HLQEVIAALRA 394 (403)
T ss_pred EEEEEEe-CCCCCHHHHHHHHHhhCCCceEEEEEEecccCCCCCeEEEEEEEEeCCHH---HHHHHHHHHHH
Confidence 5566655 48999999999999999999999998764 5677777777776522 33455555554
No 84
>cd04903 ACT_LSD C-terminal ACT domain of the L-serine dehydratase (LSD), iron-sulfur-dependent, beta subunit. The C-terminal ACT domain of the L-serine dehydratase (LSD), iron-sulfur-dependent, beta subunit, found in various bacterial anaerobes such as Clostridium, Bacillis, and Treponema species. These enzymes catalyze the deamination of L-serine, producing pyruvate and ammonia. Unlike the eukaryotic L-serine dehydratase, which requires the pyridoxal-5'-phosphate (PLP) cofactor, the prokaryotic L-serine dehydratase contains an [4Fe-4S] cluster instead of a PLP active site. The LSD alpha and beta subunits of the 'clostridial' enzyme are encoded by the sdhA and sdhB genes. The single subunit bacterial homologs of L-serine dehydratase (LSD1, LSD2, TdcG) present in Escherichia coli, and other enterobacterials, lack the ACT domain described here. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=88.94 E-value=3.6 Score=27.21 Aligned_cols=53 Identities=19% Similarity=0.218 Sum_probs=36.5
Q ss_pred CCCCChHHHHHHHHHhCCceEEEEEEEEe--CCEEEEEEEEEeccCccccCHHHHHHHHHH
Q 027547 136 VDDQFIFYEVIRILHQDGAEILNAKFSVV--GNTIFHVIHAEIRDSMFGFGAAKISERLKG 194 (222)
Q Consensus 136 ~~~~~~L~~vl~~Le~lgL~V~~a~~s~~--~~~~~~ti~~kv~~~~~~~~~~~l~~aL~~ 194 (222)
.+++|.|.+++..|.++++.+.+...... ++.....|. +.+. ....+.++|++
T Consensus 7 ~d~~g~l~~i~~~l~~~~~~I~~~~~~~~~~~~~~~i~i~--v~~~----~~~~~i~~l~~ 61 (71)
T cd04903 7 KDKPGAIAKVTSVLADHEINIAFMRVSRKEKGDQALMVIE--VDQP----IDEEVIEEIKK 61 (71)
T ss_pred CCCCChHHHHHHHHHHcCcCeeeeEEEeccCCCeEEEEEE--eCCC----CCHHHHHHHHc
Confidence 48899999999999999999999887652 355544443 3331 34455555543
No 85
>cd04889 ACT_PDH-BS-like C-terminal ACT domain of the monofunctional, NAD dependent, prephenate dehydrogenase (PDH) enzyme that catalyzes the formation of 4-hydroxyphenylpyruvate from prephenate. Included in this CD is the C-terminal ACT domain of the monofunctional, NAD dependent, prephenate dehydrogenase (PDH) enzyme that catalyzes the formation of 4-hydroxyphenylpyruvate from prephenate, found in Bacillus subtilis (BS) and other Firmicutes, Deinococci, and Bacteroidetes. PDH is the first enzyme in the aromatic amino acid pathway specific for the biosynthesis of tyrosine. This enzyme is feedback inhibited by tyrosine in B. subtilis and other microorganisms. Both phenylalanine and tryptophan have been shown to be inhibitors of this activity in B. subtilis. Bifunctional chorismate mutase-PDH (TyrA) enzymes such as those seen in Escherichia coli do not contain an ACT domain. Also included in this CD is the N-terminal ACT domain of a novel protein composed almost entirely of two tandem A
Probab=88.64 E-value=2.8 Score=27.42 Aligned_cols=40 Identities=15% Similarity=0.042 Sum_probs=33.1
Q ss_pred CCCCChHHHHHHHHHhCCceEEEEEEEEeC-CEEEEEEEEE
Q 027547 136 VDDQFIFYEVIRILHQDGAEILNAKFSVVG-NTIFHVIHAE 175 (222)
Q Consensus 136 ~~~~~~L~~vl~~Le~lgL~V~~a~~s~~~-~~~~~ti~~k 175 (222)
.++||.|.+++..|-+.|+.|.+......+ +..+..|...
T Consensus 6 ~d~~G~l~~i~~~l~~~~inI~~~~~~~~~~~~~~~~~~v~ 46 (56)
T cd04889 6 ENKPGRLAEVTEILAEAGINIKAISIAETRGEFGILRLIFS 46 (56)
T ss_pred CCCCChHHHHHHHHHHcCCCEeeEEEEEccCCcEEEEEEEC
Confidence 478999999999999999999888877654 6677666654
No 86
>cd04901 ACT_3PGDH C-terminal ACT (regulatory) domain of D-3-Phosphoglycerate Dehydrogenase (3PGDH) found in fungi and bacteria. The C-terminal ACT (regulatory) domain of D-3-Phosphoglycerate Dehydrogenase (3PGDH) found in fungi and bacteria. 3PGDH is an enzyme that belongs to the D-isomer specific, 2-hydroxyacid dehydrogenase family and catalyzes the oxidation of D-3-phosphoglycerate to 3- phosphohydroxypyruvate, which is the first step in the biosynthesis of L-serine, using NAD+ as the oxidizing agent. In Escherichia coli, the SerA 3PGDH is feedback-controlled by the end product L-serine in an allosteric manner. In the homotetrameric enzyme, the interface at adjacent ACT (regulatory) domains couples to create an extended beta-sheet. Each regulatory interface forms two serine-binding sites. The mechanism by which serine transmits inhibition to the active site is postulated to involve the tethering of the regulatory domains together to create a rigid quaternary structure with a solvent-
Probab=88.18 E-value=0.46 Score=32.24 Aligned_cols=54 Identities=15% Similarity=0.172 Sum_probs=38.7
Q ss_pred cCCCCChHHHHHHHHHhCCceEEEEEEEEeCCEEEEEEEEEeccCccccCHHHHHHHHHH
Q 027547 135 GVDDQFIFYEVIRILHQDGAEILNAKFSVVGNTIFHVIHAEIRDSMFGFGAAKISERLKG 194 (222)
Q Consensus 135 ~~~~~~~L~~vl~~Le~lgL~V~~a~~s~~~~~~~~ti~~kv~~~~~~~~~~~l~~aL~~ 194 (222)
..+++|+|.+++..|.+.++.+...+....++..+..+...+. ...++.++|++
T Consensus 6 ~~d~~g~l~~i~~~l~~~~~nI~~~~~~~~~~~a~~~~~~~~~------~l~~li~~l~~ 59 (69)
T cd04901 6 HKNVPGVLGQINTILAEHNINIAAQYLQTRGEIGYVVIDIDSE------VSEELLEALRA 59 (69)
T ss_pred ecCCCcHHHHHHHHHHHcCCCHHHHhccCCCCEEEEEEEcCCC------CCHHHHHHHHc
Confidence 3588999999999999999999887665555666666655443 34455555553
No 87
>PRK11152 ilvM acetolactate synthase 2 regulatory subunit; Provisional
Probab=88.02 E-value=3.5 Score=29.83 Aligned_cols=57 Identities=12% Similarity=0.156 Sum_probs=42.5
Q ss_pred CCCCChHHHHHHHHHhCCceEEEEEEEEe--CCEEEEEEEEEeccCccccCHHHHHHHHHHHHh
Q 027547 136 VDDQFIFYEVIRILHQDGAEILNAKFSVV--GNTIFHVIHAEIRDSMFGFGAAKISERLKGFVS 197 (222)
Q Consensus 136 ~~~~~~L~~vl~~Le~lgL~V~~a~~s~~--~~~~~~ti~~kv~~~~~~~~~~~l~~aL~~~I~ 197 (222)
.++||.|.+++..+..-|+.|.+.++... ++..-.+|.+. + ....+.+..-|.+++.
T Consensus 11 ~n~pGVL~Ri~~lf~rRGfnI~sl~v~~t~~~~~sriti~v~--~---~~~i~ql~kQL~KL~d 69 (76)
T PRK11152 11 RFRPEVLERVLRVVRHRGFQVCSMNMTQNTDAQNINIELTVA--S---ERPIDLLSSQLNKLVD 69 (76)
T ss_pred ECCccHHHHHHHHHhcCCeeeeeEEeeecCCCCEEEEEEEEC--C---CchHHHHHHHHhcCcC
Confidence 47899999999999999999999999874 44455555552 2 2456777776766554
No 88
>cd04902 ACT_3PGDH-xct C-terminal ACT (regulatory) domain of D-3-phosphoglycerate dehydrogenase (3PGDH). The C-terminal ACT (regulatory) domain of D-3-phosphoglycerate dehydrogenase (3PGDH), with an extended C-terminal (xct) region from bacteria, archaea, fungi, and plants. 3PGDH is an enzyme that belongs to the D-isomer specific, 2-hydroxyacid dehydrogenase family and catalyzes the oxidation of D-3-phosphoglycerate to 3- phosphohydroxypyruvate, which is the first step in the biosynthesis of L-serine, using NAD+ as the oxidizing agent. In bacteria, 3PGDH is feedback-controlled by the end product L-serine in an allosteric manner. Some 3PGDH enzymes have an additional domain formed by an extended C-terminal region. This additional domain introduces significant asymmetry to the homotetramer. Adjacent ACT (regulatory) domains interact, creating two serine-binding sites, however, this asymmetric arrangement results in the formation of two different and distinct domain interfaces between iden
Probab=87.99 E-value=2.2 Score=28.99 Aligned_cols=53 Identities=19% Similarity=0.222 Sum_probs=39.2
Q ss_pred CCCCChHHHHHHHHHhCCceEEEEEEEE--eCCEEEEEEEEEeccCccccCHHHHHHHHHH
Q 027547 136 VDDQFIFYEVIRILHQDGAEILNAKFSV--VGNTIFHVIHAEIRDSMFGFGAAKISERLKG 194 (222)
Q Consensus 136 ~~~~~~L~~vl~~Le~lgL~V~~a~~s~--~~~~~~~ti~~kv~~~~~~~~~~~l~~aL~~ 194 (222)
.+++|.+.++.+.|.++|+.+.+..... .++..++.|.++. . .+..+.++|++
T Consensus 7 ~d~~G~l~~i~~~l~~~~inI~~~~~~~~~~~~~~~~~i~v~~---~---~~~~~~~~l~~ 61 (73)
T cd04902 7 TDRPGVIGKVGTILGEAGINIAGMQVGRDEPGGEALMVLSVDE---P---VPDEVLEELRA 61 (73)
T ss_pred CCCCCHHHHHHHHHHHcCcChhheEeeccCCCCEEEEEEEeCC---C---CCHHHHHHHHc
Confidence 5889999999999999999998887665 3567777776643 1 23456666554
No 89
>PRK00227 glnD PII uridylyl-transferase; Provisional
Probab=87.69 E-value=3.7 Score=41.34 Aligned_cols=72 Identities=13% Similarity=0.058 Sum_probs=59.8
Q ss_pred eeEEEEEEcCCCCChHHHHHHHHHhCCceEEEEEEEEeCCEEEEEEEEEeccCccccCHHHHHHHHHHHHhccc
Q 027547 127 NLEVILTSGVDDQFIFYEVIRILHQDGAEILNAKFSVVGNTIFHVIHAEIRDSMFGFGAAKISERLKGFVSGCA 200 (222)
Q Consensus 127 ~v~V~v~~~~~~~~~L~~vl~~Le~lgL~V~~a~~s~~~~~~~~ti~~kv~~~~~~~~~~~l~~aL~~~I~~~~ 200 (222)
+-.|+|....+++|.|.++..+|--+++.|.+|++.+ ++.....|.+.-.-+. ..++..+.+.++.++...-
T Consensus 546 ~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~a~~~~-~~~~~~~~~v~~~~~~-~~~~~~~~~~~~~~~~~~~ 617 (693)
T PRK00227 546 DGFFTVIWHGDYPRELVRVLALIAAKGWNILSARMVA-NGPWSAEFDVRANGPQ-DFDPQEFLQAYKSGVYSEL 617 (693)
T ss_pred CCeEEEEecCCcccHHHHHHHHHHhcCceeeEeEEec-CCceEEEEEEecCCCC-CCChHHHHHHHHHhhcCCC
Confidence 3567776645889999999999999999999999999 8887777777765555 6789999999998887553
No 90
>cd04904 ACT_AAAH ACT domain of the nonheme iron-dependent, aromatic amino acid hydroxylases (AAAH). ACT domain of the nonheme iron-dependent, aromatic amino acid hydroxylases (AAAH): Phenylalanine hydroxylases (PAH), tyrosine hydroxylases (TH) and tryptophan hydroxylases (TPH), both peripheral (TPH1) and neuronal (TPH2) enzymes. This family of enzymes shares a common catalytic mechanism, in which dioxygen is used by an active site containing a single, reduced iron atom to hydroxylate an unactivated aromatic substrate, concomitant with a two-electron oxidation of tetrahydropterin (BH4) cofactor to its quinonoid dihydropterin form. PAH catalyzes the hydroxylation of L-Phe to L-Tyr, the first step in the catabolic degradation of L-Phe; TH catalyses the hydroxylation of L-Tyr to 3,4-dihydroxyphenylalanine, the rate limiting step in the biosynthesis of catecholamines; and TPH catalyses the hydroxylation of L-Trp to 5-hydroxytryptophan, the rate limiting step in the biosynthesis of 5-hydroxy
Probab=87.48 E-value=5.1 Score=28.20 Aligned_cols=55 Identities=2% Similarity=0.041 Sum_probs=39.8
Q ss_pred CCCCChHHHHHHHHHhCCceEEEEEEEEeCC-EEEEEEEEEeccCccccCHHHHHHHHHHH
Q 027547 136 VDDQFIFYEVIRILHQDGAEILNAKFSVVGN-TIFHVIHAEIRDSMFGFGAAKISERLKGF 195 (222)
Q Consensus 136 ~~~~~~L~~vl~~Le~lgL~V~~a~~s~~~~-~~~~ti~~kv~~~~~~~~~~~l~~aL~~~ 195 (222)
.++||.|.++|..+...|+.+.+..+-...+ .--|.|.+.+.. ....+.++|.++
T Consensus 8 ~~~pG~L~~vL~~f~~~~iNlt~IeSRP~~~~~~~y~Ffvd~~~-----~~~~~~~~l~~L 63 (74)
T cd04904 8 KEEVGALARALKLFEEFGVNLTHIESRPSRRNGSEYEFFVDCEV-----DRGDLDQLISSL 63 (74)
T ss_pred CCCCcHHHHHHHHHHHCCCcEEEEECCCCCCCCceEEEEEEEEc-----ChHHHHHHHHHH
Confidence 4689999999999999999999999987654 344666666553 223455555444
No 91
>PRK11589 gcvR glycine cleavage system transcriptional repressor; Provisional
Probab=86.81 E-value=4.9 Score=34.01 Aligned_cols=77 Identities=12% Similarity=0.123 Sum_probs=58.7
Q ss_pred eEEEEEEcCCCCChHHHHHHHHHhCCceEEEEEEEEeC----CEEEEEEEEEeccCccccCHHHHHHHHHHHHhcccccc
Q 027547 128 LEVILTSGVDDQFIFYEVIRILHQDGAEILNAKFSVVG----NTIFHVIHAEIRDSMFGFGAAKISERLKGFVSGCASEG 203 (222)
Q Consensus 128 v~V~v~~~~~~~~~L~~vl~~Le~lgL~V~~a~~s~~~----~~~~~ti~~kv~~~~~~~~~~~l~~aL~~~I~~~~~~~ 203 (222)
+.|.+ .+.++||++.+|-+.|-++|++|.+.+..+.+ +.-+|.+++++.-+. ..+.+.++++|..+-...-..+
T Consensus 96 ~~v~v-~G~DrPGIV~~vT~~la~~~iNI~~L~T~~~~a~~~~~~lf~~~~~v~lP~-~~~~~~L~~~l~~l~~eL~vd~ 173 (190)
T PRK11589 96 VWVQV-EVADSPHLIERFTALFDSHHMNIAELVSRTQPAEGERPAQLHIQITAHSPA-SQDAANIEQAFKALCTELNAQG 173 (190)
T ss_pred EEEEE-EECCCCCHHHHHHHHHHHcCCChhheEEeeecCCCCCcccEEEEEEEEcCC-CCCHHHHHHHHHHHHHHhCceE
Confidence 44555 34689999999999999999999999887664 456777777776655 5678899999988877665555
Q ss_pred ccc
Q 027547 204 EMQ 206 (222)
Q Consensus 204 ~~~ 206 (222)
.+.
T Consensus 174 ~l~ 176 (190)
T PRK11589 174 SIN 176 (190)
T ss_pred EEE
Confidence 443
No 92
>cd04931 ACT_PAH ACT domain of the nonheme iron-dependent aromatic amino acid hydroxylase, phenylalanine hydroxylases (PAH). ACT domain of the nonheme iron-dependent aromatic amino acid hydroxylase, phenylalanine hydroxylases (PAH). PAH catalyzes the hydroxylation of L-Phe to L-Tyr, the first step in the catabolic degradation of L-Phe. In PAH, an autoregulatory sequence, N-terminal of the ACT domain, extends across the catalytic domain active site and regulates the enzyme by intrasteric regulation. It appears that the activation by L-Phe induces a conformational change that converts the enzyme to a high-affinity and high-activity state. Modulation of activity is achieved through inhibition by BH4 and activation by phosphorylation of serine residues of the autoregulatory region. The molecular basis for the cooperative activation process is not fully understood yet. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=86.80 E-value=5.9 Score=29.44 Aligned_cols=43 Identities=5% Similarity=0.013 Sum_probs=34.0
Q ss_pred CCCCChHHHHHHHHHhCCceEEEEEEEEeCC-EEEEEEEEEecc
Q 027547 136 VDDQFIFYEVIRILHQDGAEILNAKFSVVGN-TIFHVIHAEIRD 178 (222)
Q Consensus 136 ~~~~~~L~~vl~~Le~lgL~V~~a~~s~~~~-~~~~ti~~kv~~ 178 (222)
.+++|.|.++|..|...|+.+.+..+-..-+ .--|.|.+.+..
T Consensus 22 ~~~pGsL~~vL~~Fa~~~INLt~IeSRP~~~~~~~Y~FfVDieg 65 (90)
T cd04931 22 KEEVGALAKVLRLFEEKDINLTHIESRPSRLNKDEYEFFINLDK 65 (90)
T ss_pred CCCCcHHHHHHHHHHHCCCCEEEEEeccCCCCCceEEEEEEEEc
Confidence 4689999999999999999999999987543 344666666543
No 93
>TIGR00119 acolac_sm acetolactate synthase, small subunit. acetohydroxyacid synthase is a synonym.
Probab=86.67 E-value=3.3 Score=34.02 Aligned_cols=58 Identities=12% Similarity=0.084 Sum_probs=44.2
Q ss_pred CCCCChHHHHHHHHHhCCceEEEEEEEEeC--CEEEEEEEEEeccCccccCHHHHHHHHHHHHh
Q 027547 136 VDDQFIFYEVIRILHQDGAEILNAKFSVVG--NTIFHVIHAEIRDSMFGFGAAKISERLKGFVS 197 (222)
Q Consensus 136 ~~~~~~L~~vl~~Le~lgL~V~~a~~s~~~--~~~~~ti~~kv~~~~~~~~~~~l~~aL~~~I~ 197 (222)
.++||.|.+|...|...|+.+.+..+...+ +....+|++... ....+.+..-|.+++.
T Consensus 9 en~pGvL~rI~~lf~rrg~NI~Sl~v~~t~~~~~sriti~V~~d----~~~i~qi~kQl~Kli~ 68 (157)
T TIGR00119 9 ENEPGVLSRVAGLFTRRGFNIESLTVGPTEDPDLSRMTIVVVGD----DKVLEQITKQLNKLVD 68 (157)
T ss_pred cCCCcHHHHHHHHHHhCCceEEEEEEeecCCCCEEEEEEEEECC----HHHHHHHHHHHhcCcc
Confidence 488999999999999999999999988665 456677777541 2346666777766665
No 94
>PRK11895 ilvH acetolactate synthase 3 regulatory subunit; Reviewed
Probab=85.61 E-value=4.3 Score=33.52 Aligned_cols=58 Identities=10% Similarity=0.109 Sum_probs=43.7
Q ss_pred CCCCChHHHHHHHHHhCCceEEEEEEEEeC--CEEEEEEEEEeccCccccCHHHHHHHHHHHHh
Q 027547 136 VDDQFIFYEVIRILHQDGAEILNAKFSVVG--NTIFHVIHAEIRDSMFGFGAAKISERLKGFVS 197 (222)
Q Consensus 136 ~~~~~~L~~vl~~Le~lgL~V~~a~~s~~~--~~~~~ti~~kv~~~~~~~~~~~l~~aL~~~I~ 197 (222)
.++||.|.+|...|...|+.|.+..+...+ +....+|++...+ ...+.+..-|.+++.
T Consensus 10 eN~pGvL~rI~~lf~rrg~NI~Sl~v~~te~~~~sriti~V~~~~----~~i~qi~kQl~KLid 69 (161)
T PRK11895 10 ENEPGVLSRVAGLFSRRGYNIESLTVGPTEDPGLSRMTIVTSGDE----QVIEQITKQLNKLID 69 (161)
T ss_pred cCCCcHHHHHHHHHHhCCCcEEEEEeeecCCCCEEEEEEEEECCH----HHHHHHHHHHhcccc
Confidence 488999999999999999999999988654 5566677665422 346666666666655
No 95
>PRK06737 acetolactate synthase 1 regulatory subunit; Validated
Probab=84.29 E-value=4.4 Score=29.34 Aligned_cols=62 Identities=15% Similarity=0.140 Sum_probs=41.8
Q ss_pred EEEEEcCCCCChHHHHHHHHHhCCceEEEEEEEEeC--CEEEEEEEEEeccCccccCHHHHHHHHHHHH
Q 027547 130 VILTSGVDDQFIFYEVIRILHQDGAEILNAKFSVVG--NTIFHVIHAEIRDSMFGFGAAKISERLKGFV 196 (222)
Q Consensus 130 V~v~~~~~~~~~L~~vl~~Le~lgL~V~~a~~s~~~--~~~~~ti~~kv~~~~~~~~~~~l~~aL~~~I 196 (222)
+.+.. .++||.|.++..++..-|+.|-+.++.... +..-.+|.+...+ ...+.+..-|.+++
T Consensus 5 isi~v-~n~pGVL~Ri~~lf~rRgfNI~Sl~vg~te~~~~sriti~~~~~~----~~i~qi~kQL~KLi 68 (76)
T PRK06737 5 FSLVI-HNDPSVLLRISGIFARRGYYISSLNLNERDTSGVSEMKLTAVCTE----NEATLLVSQLKKLI 68 (76)
T ss_pred EEEEE-ecCCCHHHHHHHHHhccCcceEEEEecccCCCCeeEEEEEEECCH----HHHHHHHHHHhCCc
Confidence 34444 478999999999999999999999988544 4556666664222 23445555554443
No 96
>COG2844 GlnD UTP:GlnB (protein PII) uridylyltransferase [Posttranslational modification, protein turnover, chaperones]
Probab=84.04 E-value=6.6 Score=40.26 Aligned_cols=77 Identities=14% Similarity=0.135 Sum_probs=57.0
Q ss_pred EEeeCCeeEEEEEEcCCCCChHHHHHHHHHhCCceEEEEEEE-EeCCEEEEEEEEEeccCccccCHH---HHHHHHHHHH
Q 027547 121 IHEMGSNLEVILTSGVDDQFIFYEVIRILHQDGAEILNAKFS-VVGNTIFHVIHAEIRDSMFGFGAA---KISERLKGFV 196 (222)
Q Consensus 121 V~~~g~~v~V~v~~~~~~~~~L~~vl~~Le~lgL~V~~a~~s-~~~~~~~~ti~~kv~~~~~~~~~~---~l~~aL~~~I 196 (222)
++....+.+|.|.| +++|.+|..+..++...|++|+.|++. +.+|.++-||.+...++. .++.+ .+...|.+++
T Consensus 678 ~r~~~~~teV~V~a-~d~p~Lfa~v~~~~~~~g~~i~dAqi~tt~dG~alDtfiv~~~~g~-~~~~dr~~~~~~~l~~~l 755 (867)
T COG2844 678 VRPHSGGTEVFVYA-PDRPRLFAVVCAALSRRGLSIVDAQIFTTRDGYALDTFIVLEPDGF-PVEEDRRAALRGELIEAL 755 (867)
T ss_pred ecccCCceEEEEEc-CCCccHHHHHHHHHccCCCceeeeEEEEccCCceeeeEEEecCCCC-ccchhHHHHHHHHHHHHH
Confidence 44444678899988 589999999999999999999999987 468889999887755544 33433 3344555555
Q ss_pred hcc
Q 027547 197 SGC 199 (222)
Q Consensus 197 ~~~ 199 (222)
.+.
T Consensus 756 ~s~ 758 (867)
T COG2844 756 LSG 758 (867)
T ss_pred hcC
Confidence 544
No 97
>cd04929 ACT_TPH ACT domain of the nonheme iron-dependent aromatic amino acid hydroxylase, tryptophan hydroxylases (TPH), both peripheral (TPH1) and neuronal (TPH2) enzymes. ACT domain of the nonheme iron-dependent aromatic amino acid hydroxylase, tryptophan hydroxylases (TPH), both peripheral (TPH1) and neuronal (TPH2) enzymes. TPH catalyses the hydroxylation of L-Trp to 5-hydroxytryptophan, the rate limiting step in the biosynthesis of 5-hydroxytryptamine (serotonin) and the first reaction in the synthesis of melatonin. Very little is known about the role of the ACT domain in TPH, which appears to be regulated by phosphorylation but not by its substrate or cofactor. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=82.75 E-value=13 Score=26.37 Aligned_cols=55 Identities=5% Similarity=0.085 Sum_probs=40.0
Q ss_pred CCCCChHHHHHHHHHhCCceEEEEEEEEeC-CEEEEEEEEEeccCccccCHHHHHHHHHHH
Q 027547 136 VDDQFIFYEVIRILHQDGAEILNAKFSVVG-NTIFHVIHAEIRDSMFGFGAAKISERLKGF 195 (222)
Q Consensus 136 ~~~~~~L~~vl~~Le~lgL~V~~a~~s~~~-~~~~~ti~~kv~~~~~~~~~~~l~~aL~~~ 195 (222)
.+++|.|.++|..++..|+.+.+..+-... ..--|.|.+.+... .+.++++|.++
T Consensus 8 ~~~~g~L~~iL~~f~~~~inl~~IeSRP~~~~~~~y~F~id~e~~-----~~~i~~~l~~l 63 (74)
T cd04929 8 KNEVGGLAKALKLFQELGINVVHIESRKSKRRSSEFEIFVDCECD-----QRRLDELVQLL 63 (74)
T ss_pred CCCCcHHHHHHHHHHHCCCCEEEEEeccCCCCCceEEEEEEEEcC-----HHHHHHHHHHH
Confidence 477999999999999999999999998653 33446666665432 23566666544
No 98
>CHL00100 ilvH acetohydroxyacid synthase small subunit
Probab=82.60 E-value=7.6 Score=32.49 Aligned_cols=66 Identities=8% Similarity=0.042 Sum_probs=47.5
Q ss_pred EEEEEcCCCCChHHHHHHHHHhCCceEEEEEEEEe--CCEEEEEEEEEeccCccccCHHHHHHHHHHHHhccc
Q 027547 130 VILTSGVDDQFIFYEVIRILHQDGAEILNAKFSVV--GNTIFHVIHAEIRDSMFGFGAAKISERLKGFVSGCA 200 (222)
Q Consensus 130 V~v~~~~~~~~~L~~vl~~Le~lgL~V~~a~~s~~--~~~~~~ti~~kv~~~~~~~~~~~l~~aL~~~I~~~~ 200 (222)
+.+.. .++||.|.+|...|-..|++|.+.++... .+..-.+|.+. ... ...+.|.+.|.+++.-..
T Consensus 5 isvlv-~n~PGVL~RIt~lFsrRg~NIesLsv~~t~~~~~sr~TIvv~--~~~--~~ieqL~kQL~KLidVl~ 72 (174)
T CHL00100 5 LSVLV-EDESGVLTRIAGLFARRGFNIESLAVGPAEQKGISRITMVVP--GDD--RTIEQLTKQLYKLVNILK 72 (174)
T ss_pred EEEEE-eCcCCHHHHHHHHHHhCCCCeeEEEeeEcCCCCccEEEEEEE--CCH--HHHHHHHHHHHHHhHhhE
Confidence 34433 48999999999999999999999999863 34444455543 322 227888888988887654
No 99
>KOG4447 consensus Transcription factor TWIST [Transcription]
Probab=81.68 E-value=2.2 Score=35.15 Aligned_cols=47 Identities=17% Similarity=0.321 Sum_probs=33.2
Q ss_pred hHHHHHHHHHHHHHHHHHHhcCCCCCCCCCCChhHHHHHHHHHHHHHH
Q 027547 30 KTIEKNRRDQMKNLYSTLKSLLPNQPSKEELSLPDQVDEAINYIKMLE 77 (222)
Q Consensus 30 ~~~ER~RR~~mn~~~~~LrsLlP~~~~~~k~si~~iL~~ai~YIk~Lq 77 (222)
-..||.|.+++++.|.-|++|+|..+...|.-+ ..|.-+..||..|.
T Consensus 27 ~~~e~~R~~~ls~~s~l~g~l~pgspa~gk~~~-ktlr~~~~~~~~~d 73 (173)
T KOG4447|consen 27 QRKERGRKRRLSDASTLLGKLEPGSPADGKRGK-KTLRIGTDSIQSLD 73 (173)
T ss_pred hHHHHhHHhhhhhhhhhccccCCCCCCcccccc-cccccCCCchhhHH
Confidence 345999999999999999999998764333222 22566666666553
No 100
>PRK13562 acetolactate synthase 1 regulatory subunit; Provisional
Probab=80.79 E-value=6.5 Score=29.13 Aligned_cols=64 Identities=13% Similarity=0.083 Sum_probs=44.0
Q ss_pred EEEEEcCCCCChHHHHHHHHHhCCceEEEEEEEEeC--CEEEEEEEEEeccCccccCHHHHHHHHHHHHh
Q 027547 130 VILTSGVDDQFIFYEVIRILHQDGAEILNAKFSVVG--NTIFHVIHAEIRDSMFGFGAAKISERLKGFVS 197 (222)
Q Consensus 130 V~v~~~~~~~~~L~~vl~~Le~lgL~V~~a~~s~~~--~~~~~ti~~kv~~~~~~~~~~~l~~aL~~~I~ 197 (222)
+.+.. .++||.|.++...|-..|+.|.+.+++... +..-.+|.+.+.+ ....+.+..-|.+.+.
T Consensus 5 isvlV-eN~~GVL~Rit~lFsRRg~NI~SLtvg~Te~~~iSRmtivv~~~d---~~~ieqI~kQL~Klid 70 (84)
T PRK13562 5 LKLQV-ADQVSTLNRITSAFVRLQYNIDTLHVTHSEQPGISNMEIQVDIQD---DTSLHILIKKLKQQIN 70 (84)
T ss_pred EEEEE-ECCCCHHHHHHHHHhccCcCeeeEEecccCCCCceEEEEEEeCCC---HHHHHHHHHHHhCCcc
Confidence 34444 378999999999999999999999988654 4566667665322 1234566666665554
No 101
>KOG3560 consensus Aryl-hydrocarbon receptor [Transcription]
Probab=80.25 E-value=1.6 Score=42.61 Aligned_cols=39 Identities=28% Similarity=0.526 Sum_probs=33.6
Q ss_pred HHHHHHHHHHHHHHHHhcCCCC----CCCCCCChhHHHHHHHHHHH
Q 027547 33 EKNRRDQMKNLYSTLKSLLPNQ----PSKEELSLPDQVDEAINYIK 74 (222)
Q Consensus 33 ER~RR~~mn~~~~~LrsLlP~~----~~~~k~si~~iL~~ai~YIk 74 (222)
-++-|+++|.-++.|.+|||.. +|.||.|+ |.-++.|++
T Consensus 33 SKRHRdRLNaELD~lAsLLPfpqdiisKLDkLSV---LRLSVSyLr 75 (712)
T KOG3560|consen 33 SKRHRDRLNAELDHLASLLPFPQDIISKLDKLSV---LRLSVSYLR 75 (712)
T ss_pred chhHHHHhhhHHHHHHHhcCCCHHHHhhhhhhhh---hhhhHHHHH
Confidence 4556899999999999999976 46789998 999999974
No 102
>PRK10872 relA (p)ppGpp synthetase I/GTP pyrophosphokinase; Provisional
Probab=79.61 E-value=8.4 Score=39.19 Aligned_cols=61 Identities=15% Similarity=0.130 Sum_probs=44.5
Q ss_pred EEEEEEcCCCCChHHHHHHHHHhCCceEEEEEEEEe--CCEEEEEEEEEeccCccccCHHHHHHHHH
Q 027547 129 EVILTSGVDDQFIFYEVIRILHQDGAEILNAKFSVV--GNTIFHVIHAEIRDSMFGFGAAKISERLK 193 (222)
Q Consensus 129 ~V~v~~~~~~~~~L~~vl~~Le~lgL~V~~a~~s~~--~~~~~~ti~~kv~~~~~~~~~~~l~~aL~ 193 (222)
.+.|.+ .+++|+|.+|..+|.+.++.|.++++.+. ++.+...|.++|.+-. .-..|..+|+
T Consensus 668 ~I~I~~-~Dr~GlL~dIt~~is~~~~nI~~v~~~~~~~~~~~~~~~~ieV~~~~---~L~~l~~~L~ 730 (743)
T PRK10872 668 VVRVTA-NDRSGLLRDITTILANEKVNVLGVASRSDTKQQLATIDMTIEIYNLQ---VLGRVLGKLN 730 (743)
T ss_pred EEEEEE-cCCCCHHHHHHHHHHHCCCCeEEEEeEEcCCCCEEEEEEEEEECCHH---HHHHHHHHHh
Confidence 444444 58999999999999999999999998765 4667777888887632 3344444444
No 103
>PRK11589 gcvR glycine cleavage system transcriptional repressor; Provisional
Probab=79.35 E-value=6.3 Score=33.34 Aligned_cols=66 Identities=14% Similarity=0.126 Sum_probs=49.4
Q ss_pred eEEEEEEcCCCCChHHHHHHHHHhCCceEEEEEEEEeCCEEEEEEEEEeccCccccCHHHHHHHHHHHHhc
Q 027547 128 LEVILTSGVDDQFIFYEVIRILHQDGAEILNAKFSVVGNTIFHVIHAEIRDSMFGFGAAKISERLKGFVSG 198 (222)
Q Consensus 128 v~V~v~~~~~~~~~L~~vl~~Le~lgL~V~~a~~s~~~~~~~~ti~~kv~~~~~~~~~~~l~~aL~~~I~~ 198 (222)
+-|+++. .+|||+...|-++|-++|..++.++.+..++.+...+.+... . .....++.+|..+-..
T Consensus 9 lviTviG-~DrpGIVa~vs~~l~~~g~NI~ds~~t~lgg~Fa~i~lvs~~--~--~~~~~le~~L~~l~~~ 74 (190)
T PRK11589 9 LVITALG-ADRPGIVNTITRHVSSCGCNIEDSRLAMLGEEFTFIMLLSGS--W--NAITLIESTLPLKGAE 74 (190)
T ss_pred EEEEEEc-CCCChHHHHHHHHHHHcCCCeeehhhHhhCCceEEEEEEeCC--h--hHHHHHHHHHHhhhhh
Confidence 4455554 699999999999999999999999999998855444444222 2 3577888888776643
No 104
>KOG3558 consensus Hypoxia-inducible factor 1/Neuronal PAS domain protein NPAS1 [Signal transduction mechanisms; Transcription]
Probab=79.09 E-value=1.6 Score=43.59 Aligned_cols=47 Identities=21% Similarity=0.429 Sum_probs=38.3
Q ss_pred hhhhhHHHHHHHHHHHHHHHHHHhcCCCCC----CCCCCChhHHHHHHHHHHHH
Q 027547 26 KIERKTIEKNRRDQMKNLYSTLKSLLPNQP----SKEELSLPDQVDEAINYIKM 75 (222)
Q Consensus 26 ~~~h~~~ER~RR~~mn~~~~~LrsLlP~~~----~~~k~si~~iL~~ai~YIk~ 75 (222)
|..-..+=|.||-+=|.-|..|..+||... ..||+|| +.-||.|++-
T Consensus 47 kEkSRdAARsRRsKEn~~FyeLa~~lPlp~aisshLDkaSi---mRLtISyLRl 97 (768)
T KOG3558|consen 47 KEKSRDAARSRRSKENEEFYELAKLLPLPAAISSHLDKASI---MRLTISYLRL 97 (768)
T ss_pred hhhhhhhhhhhcccchHHHHHHHHhCCCcchhhhhhhhHHH---HHHHHHHHHH
Confidence 344455668899999999999999999653 3589998 9999999873
No 105
>cd04906 ACT_ThrD-I_1 First of two tandem C-terminal ACT domains of threonine dehydratase I (ThrD-I; L-threonine hydrolyase). This CD includes the first of two tandem C-terminal ACT domains of threonine dehydratase I (ThrD-I; L-threonine hydrolyase) which catalyzes the committed step in branched chain amino acid biosynthesis in plants and microorganisms, the pyridoxal 5'-phosphate (PLP)-dependent dehydration/deamination of L-threonine (or L-serine) to 2-ketobutyrate (or pyruvate). ThrD-I is a cooperative, feedback-regulated (isoleucine and valine) allosteric enzyme that forms a tetramer and contains four pyridoxal phosphate moieties. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=78.39 E-value=18 Score=26.04 Aligned_cols=55 Identities=11% Similarity=0.132 Sum_probs=34.1
Q ss_pred CCCCChHHHHHHHHHhCCceEEEEEEEEeC-CEEEEEEEEEeccCccccCHHHHHHHHHH
Q 027547 136 VDDQFIFYEVIRILHQDGAEILNAKFSVVG-NTIFHVIHAEIRDSMFGFGAAKISERLKG 194 (222)
Q Consensus 136 ~~~~~~L~~vl~~Le~lgL~V~~a~~s~~~-~~~~~ti~~kv~~~~~~~~~~~l~~aL~~ 194 (222)
+++||.|.+++++|- +.+|......... +.....+..++.++. ...+.+.++|++
T Consensus 9 pD~PG~L~~ll~~l~--~anI~~~~y~~~~~~~~~v~i~ie~~~~~--~~~~~i~~~L~~ 64 (85)
T cd04906 9 PERPGSFKKFCELIG--PRNITEFNYRYADEKDAHIFVGVSVANGA--EELAELLEDLKS 64 (85)
T ss_pred CCCCcHHHHHHHHhC--CCceeEEEEEccCCCeeEEEEEEEeCCcH--HHHHHHHHHHHH
Confidence 589999999999999 6777766665432 333344445544311 235556666654
No 106
>KOG3559 consensus Transcriptional regulator SIM1 [Transcription]
Probab=78.36 E-value=2.1 Score=40.50 Aligned_cols=44 Identities=25% Similarity=0.429 Sum_probs=37.1
Q ss_pred hHHHHHHHHHHHHHHHHHHhcCCCCC----CCCCCChhHHHHHHHHHHHHH
Q 027547 30 KTIEKNRRDQMKNLYSTLKSLLPNQP----SKEELSLPDQVDEAINYIKML 76 (222)
Q Consensus 30 ~~~ER~RR~~mn~~~~~LrsLlP~~~----~~~k~si~~iL~~ai~YIk~L 76 (222)
+.+-|.||++-|--|..|..|||... ..||+|+ +.-|..|||.-
T Consensus 6 KnaA~tRRekEN~EF~eLAklLPLa~AItsQlDKasi---iRLtTsYlKmr 53 (598)
T KOG3559|consen 6 KNAARTRREKENYEFYELAKLLPLASAITSQLDKASI---IRLTTSYLKMR 53 (598)
T ss_pred hhHHHHHHHhhcchHHHHHhhccchhhhhhccchhhh---hhHHHHHHHHH
Confidence 34568999999999999999999763 3588888 99999999854
No 107
>cd04898 ACT_ACR-like_4 ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). This CD includes the C-terminal ACT domain, of a novel type of ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). ACR proteins, found only in Arabidopsis and Oryza, as yet, are proposed to function as novel regulatory or sensor proteins in plants. Nine ACR gene products (ACR1-8 in Arabidopsis and OsARC1-9 in Oryza) have been described, however, the ACR-like sequences in this CD are distinct from those characterized. This CD includes the Oryza sativa ACR-like protein (Os05g0113000) encoded on chromosome 5 and the Arabidopsis thaliana predicted gene product, At2g39570. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=77.92 E-value=6.9 Score=28.47 Aligned_cols=63 Identities=19% Similarity=0.261 Sum_probs=43.9
Q ss_pred EcCCCCChHHHHHHHHHhCCceEEEEEEE--EeCCEEEEEEEEEeccCccccC----HHHHHHHHHHHH
Q 027547 134 SGVDDQFIFYEVIRILHQDGAEILNAKFS--VVGNTIFHVIHAEIRDSMFGFG----AAKISERLKGFV 196 (222)
Q Consensus 134 ~~~~~~~~L~~vl~~Le~lgL~V~~a~~s--~~~~~~~~ti~~kv~~~~~~~~----~~~l~~aL~~~I 196 (222)
|++.+|-.|+++.-||+.++..|-+|.+. ..+++-.-.......+...... -..+.++++..+
T Consensus 6 sGkGRPrVfyDvTlALK~L~i~IFsaeIgR~~~~~r~wEvyR~LL~e~~~~~~~~~~r~~i~drv~~~l 74 (77)
T cd04898 6 SGKGRPRVFYDITLALKKLGICIFSAEIGRHSTGDRQWEVYRVLLLEHDRLKLGGRQRSKVVDRVTKTL 74 (77)
T ss_pred cCCCCcceeeehHHHHHHhccEEEehhhhhhhcCCeeEEEEEEeecCCCccccchHHHHHHHHHHHHHH
Confidence 67789999999999999999999999998 4566655444555555432233 345555555544
No 108
>COG3978 Acetolactate synthase (isozyme II), small (regulatory) subunit [Function unknown]
Probab=77.04 E-value=15 Score=27.09 Aligned_cols=64 Identities=8% Similarity=0.087 Sum_probs=47.7
Q ss_pred CCCCChHHHHHHHHHhCCceEEEEEEEEe--CCEEEEEEEEEeccCccccCHHHHHHHHHHHHhccccccc
Q 027547 136 VDDQFIFYEVIRILHQDGAEILNAKFSVV--GNTIFHVIHAEIRDSMFGFGAAKISERLKGFVSGCASEGE 204 (222)
Q Consensus 136 ~~~~~~L~~vl~~Le~lgL~V~~a~~s~~--~~~~~~ti~~kv~~~~~~~~~~~l~~aL~~~I~~~~~~~~ 204 (222)
+.+|+.|-+||.+.+.-|+.|-..+.+.. ++..-..+. |...+ .++.+..-|.++..-.++++-
T Consensus 11 r~~pe~leRVLrvtrhRGF~vcamnmt~~~da~~~nie~t--V~s~R---~~~lL~~QLeKl~Dv~~V~i~ 76 (86)
T COG3978 11 RFNPETLERVLRVTRHRGFRVCAMNMTAAVDAGNANIELT--VDSDR---SVDLLTSQLEKLYDVAHVEIT 76 (86)
T ss_pred cCChHHHHHHHHHhhhcCeEEEEeecccccccccceEEEE--EcCCC---ChHHHHHHHHHHccceeEEEe
Confidence 47899999999999999999999999876 444444444 44444 677888888887766565543
No 109
>cd04922 ACT_AKi-HSDH-ThrA_2 ACT domains of the bifunctional enzyme aspartokinase (AK) - homoserine dehydrogenase (HSDH). This CD includes the second of two ACT domains of the bifunctional enzyme aspartokinase (AK) - homoserine dehydrogenase (HSDH). The ACT domains are positioned between the N-terminal catalytic domain of AK and the C-terminal HSDH domain found in bacteria (Escherichia coli (EC) ThrA) and higher plants (Zea mays AK-HSDH). AK and HSDH are the first and third enzymes in the biosynthetic pathway of the aspartate family of amino acids. AK catalyzes the phosphorylation of Asp to P-aspartyl phosphate. HSDH catalyzes the NADPH-dependent conversion of Asp 3-semialdehyde to homoserine. HSDH is the first committed reaction in the branch of the pathway that leads to Thr and Met. In E. coli, ThrA is subject to allosteric regulation by the end product L-threonine and the native enzyme is reported to be tetrameric. As with bacteria, plant AK and HSDH are feedback inhibited by pathwa
Probab=76.50 E-value=18 Score=23.80 Aligned_cols=34 Identities=9% Similarity=0.020 Sum_probs=25.6
Q ss_pred EEEEEc--CCCCChHHHHHHHHHhCCceEEEEEEEE
Q 027547 130 VILTSG--VDDQFIFYEVIRILHQDGAEILNAKFSV 163 (222)
Q Consensus 130 V~v~~~--~~~~~~L~~vl~~Le~lgL~V~~a~~s~ 163 (222)
|.+++. ...++.+.+++++|.+.|+.|...+.+.
T Consensus 4 isvvg~~~~~~~~~~~~i~~~l~~~~I~v~~i~~~~ 39 (66)
T cd04922 4 LALVGDGMAGTPGVAATFFSALAKANVNIRAIAQGS 39 (66)
T ss_pred EEEECCCCCCCccHHHHHHHHHHHCCCCEEEEEecC
Confidence 444442 3568999999999999999997776544
No 110
>PRK08198 threonine dehydratase; Provisional
Probab=76.12 E-value=18 Score=33.48 Aligned_cols=63 Identities=14% Similarity=0.182 Sum_probs=43.2
Q ss_pred eEEEEEEcCCCCChHHHHHHHHHhCCceEEEEEEEEe-----CCEEEEEEEEEeccCccccCHHHHHHHHHH
Q 027547 128 LEVILTSGVDDQFIFYEVIRILHQDGAEILNAKFSVV-----GNTIFHVIHAEIRDSMFGFGAAKISERLKG 194 (222)
Q Consensus 128 v~V~v~~~~~~~~~L~~vl~~Le~lgL~V~~a~~s~~-----~~~~~~ti~~kv~~~~~~~~~~~l~~aL~~ 194 (222)
+.+.|.- .++||.|.++++.|-+.|.+|+.++.... .+....+|.+++.+.. ..++|.++|++
T Consensus 328 ~~l~v~l-~D~PG~L~~ll~~i~~~g~NI~~i~~~~~~~~~~~~~~~v~v~ie~~~~~---~~~~l~~~L~~ 395 (404)
T PRK08198 328 LKLRVRL-PDRPGQLAKLLSIIAELGANVIDVDHDRFSPDLRLGEVEVELTLETRGPE---HIEEILDALRD 395 (404)
T ss_pred EEEEEEe-CCCCCHHHHHHHHHhhCCCceEEEEEEEccCCCCCceEEEEEEEEeCCHH---HHHHHHHHHHH
Confidence 3444433 58999999999999999999999987742 3556666777664311 34455555543
No 111
>PRK11092 bifunctional (p)ppGpp synthetase II/ guanosine-3',5'-bis pyrophosphate 3'-pyrophosphohydrolase; Provisional
Probab=75.68 E-value=12 Score=37.74 Aligned_cols=49 Identities=14% Similarity=0.157 Sum_probs=39.5
Q ss_pred EEEEEEcCCCCChHHHHHHHHHhCCceEEEEEEEEeC-CEEEEEEEEEecc
Q 027547 129 EVILTSGVDDQFIFYEVIRILHQDGAEILNAKFSVVG-NTIFHVIHAEIRD 178 (222)
Q Consensus 129 ~V~v~~~~~~~~~L~~vl~~Le~lgL~V~~a~~s~~~-~~~~~ti~~kv~~ 178 (222)
.+.|.+ .+++|+|.+|+.+|-+.++.|.++++.+.+ +.+...|..+|.+
T Consensus 628 ~i~I~~-~dr~GlL~dI~~~i~~~~~nI~~v~~~~~~~~~~~~~~~ieV~~ 677 (702)
T PRK11092 628 EIKVEM-FNHQGALANLTAAINTTGSNIQSLNTEEKDGRVYSAFIRLTARD 677 (702)
T ss_pred EEEEEE-eCCCCHHHHHHHHHHHCCCCeEEEEEEEcCCCEEEEEEEEEECC
Confidence 444444 488999999999999999999999987765 4666778888776
No 112
>PRK06382 threonine dehydratase; Provisional
Probab=74.99 E-value=12 Score=34.83 Aligned_cols=62 Identities=13% Similarity=0.157 Sum_probs=41.8
Q ss_pred EEEEEEcCCCCChHHHHHHHHHhCCceEEEEEEE----Ee-CCEEEEEEEEEeccCccccCHHHHHHHHHH
Q 027547 129 EVILTSGVDDQFIFYEVIRILHQDGAEILNAKFS----VV-GNTIFHVIHAEIRDSMFGFGAAKISERLKG 194 (222)
Q Consensus 129 ~V~v~~~~~~~~~L~~vl~~Le~lgL~V~~a~~s----~~-~~~~~~ti~~kv~~~~~~~~~~~l~~aL~~ 194 (222)
.+.|.. .++||.|.+|++.|.+++++|++.... .. .+....+|+++..+.. ....|.+.|++
T Consensus 332 rl~v~v-~D~pG~L~~l~~ii~~~~~nI~~v~~~~~~~~~~~~~~~v~i~vet~~~~---~~~~v~~~L~~ 398 (406)
T PRK06382 332 RIECNI-PDRPGNLYRIANAIASNGGNIYHAEVDNLRKETPPGFQSVTFTVNVRGQD---HLDRILNALRE 398 (406)
T ss_pred EEEEEc-CCCCCHHHHHHHHHhcCCCcEEEEEEeeccccCCCCcEEEEEEEEeCCHH---HHHHHHHHHHH
Confidence 344433 589999999999999999999988764 22 3455666777665322 33466666654
No 113
>TIGR00691 spoT_relA (p)ppGpp synthetase, RelA/SpoT family. (p)ppGpp is a regulatory metabolite of the stringent response, but appears also to be involved in antibiotic biosynthesis in some species.
Probab=74.94 E-value=13 Score=37.36 Aligned_cols=49 Identities=12% Similarity=0.273 Sum_probs=40.3
Q ss_pred EEEEEEcCCCCChHHHHHHHHHhCCceEEEEEEEEe-CCEEEEEEEEEecc
Q 027547 129 EVILTSGVDDQFIFYEVIRILHQDGAEILNAKFSVV-GNTIFHVIHAEIRD 178 (222)
Q Consensus 129 ~V~v~~~~~~~~~L~~vl~~Le~lgL~V~~a~~s~~-~~~~~~ti~~kv~~ 178 (222)
.|.|.+ .+++|+|.+|+.+|-+.++.|.++++... ++.+...|.++|.+
T Consensus 612 ~I~I~~-~dr~GlLadI~~~ia~~~~nI~~v~~~~~~~~~~~~~~~ieV~~ 661 (683)
T TIGR00691 612 DINIEA-VDRKGVLSDLTTAISENDSNIVSISTKTYGKREAILNITVEIKN 661 (683)
T ss_pred EEEEEE-ecCCCHHHHHHHHHHHCCCCeEEEEeEEcCCCEEEEEEEEEECC
Confidence 444444 48899999999999999999999999876 46777778888876
No 114
>TIGR01127 ilvA_1Cterm threonine dehydratase, medium form. A form of threonine dehydratase with two copies of the C-terminal domain Pfam:PF00585 is described by TIGR01124. This model describes a phylogenetically distinct form with a single copy of pfam00585. This form branches with the catabolic threonine dehydratase of E. coli; many members are designated as catabolic for this reason. However, the catabolic form lacks any pfam00585 domain. Many members of this model are found in species with other Ile biosynthetic enzymes.
Probab=73.46 E-value=24 Score=32.35 Aligned_cols=62 Identities=15% Similarity=0.118 Sum_probs=42.9
Q ss_pred EEEEEEcCCCCChHHHHHHHHHhCCceEEEEEEEE-----eCCEEEEEEEEEeccCccccCHHHHHHHHHH
Q 027547 129 EVILTSGVDDQFIFYEVIRILHQDGAEILNAKFSV-----VGNTIFHVIHAEIRDSMFGFGAAKISERLKG 194 (222)
Q Consensus 129 ~V~v~~~~~~~~~L~~vl~~Le~lgL~V~~a~~s~-----~~~~~~~ti~~kv~~~~~~~~~~~l~~aL~~ 194 (222)
.+.|.- .++||.|.++++.+.+.|.+|++..... ..+....+|.++..+. ...+.|.++|++
T Consensus 307 ~l~v~l-~D~pG~L~~v~~~i~~~~~NI~~i~~~r~~~~~~~~~~~v~v~vet~~~---~~~~~i~~~L~~ 373 (380)
T TIGR01127 307 RIETVL-PDRPGALYHLLESIAEARANIVKIDHDRLSKEIPPGFAMVEITLETRGK---EHLDEILKILRD 373 (380)
T ss_pred EEEEEe-CCCCCHHHHHHHHHhcCCCcEEEEEeeccccCCCCceEEEEEEEEeCCH---HHHHHHHHHHHH
Confidence 444433 5899999999999999999999997662 1345666677766531 244566666654
No 115
>cd04930 ACT_TH ACT domain of the nonheme iron-dependent aromatic amino acid hydroxylase, tyrosine hydroxylases (TH). ACT domain of the nonheme iron-dependent aromatic amino acid hydroxylase, tyrosine hydroxylases (TH). TH catalyses the hydroxylation of L-Tyr to 3,4-dihydroxyphenylalanine, the rate limiting step in the biosynthesis of catecholamines (dopamine, noradrenaline and adrenaline), functioning as hormones and neurotransmitters. The enzyme is not regulated by its amino acid substrate, but instead by phosphorylation at several serine residues located N-terminal of the ACT domain, and by feedback inhibition by catecholamines at the active site. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=71.40 E-value=29 Score=26.88 Aligned_cols=55 Identities=4% Similarity=-0.037 Sum_probs=38.7
Q ss_pred CCCCChHHHHHHHHHhCCceEEEEEEEEeCC-EEEEEEEEEeccCccccCHHHHHHHHHHH
Q 027547 136 VDDQFIFYEVIRILHQDGAEILNAKFSVVGN-TIFHVIHAEIRDSMFGFGAAKISERLKGF 195 (222)
Q Consensus 136 ~~~~~~L~~vl~~Le~lgL~V~~a~~s~~~~-~~~~ti~~kv~~~~~~~~~~~l~~aL~~~ 195 (222)
++++|.|.++|..|...|+.+.+..+-...+ .--|.|.+.+.... +.+.++|..+
T Consensus 49 ~~~pGsL~~iL~~Fa~~gINLt~IESRP~~~~~~eY~FfIdieg~~-----~~~~~aL~~L 104 (115)
T cd04930 49 KEGFSSLSRILKVFETFEAKIHHLESRPSRKEGGDLEVLVRCEVHR-----SDLLQLISSL 104 (115)
T ss_pred CCCCcHHHHHHHHHHHCCCCEEEEECCcCCCCCceEEEEEEEEeCH-----HHHHHHHHHH
Confidence 5689999999999999999999999887633 23455555554322 2355555444
No 116
>PRK11899 prephenate dehydratase; Provisional
Probab=69.28 E-value=31 Score=30.86 Aligned_cols=61 Identities=11% Similarity=0.088 Sum_probs=47.2
Q ss_pred CCCCChHHHHHHHHHhCCceEEEEEEEEeCC-EEEEEEEEEeccCccccCHHHHHHHHHHHHhcc
Q 027547 136 VDDQFIFYEVIRILHQDGAEILNAKFSVVGN-TIFHVIHAEIRDSMFGFGAAKISERLKGFVSGC 199 (222)
Q Consensus 136 ~~~~~~L~~vl~~Le~lgL~V~~a~~s~~~~-~~~~ti~~kv~~~~~~~~~~~l~~aL~~~I~~~ 199 (222)
.++||.|.++|.+|...|++.....+-...+ .--|.|.+.+... .+...+.++|.++-..+
T Consensus 202 ~~~pGaL~~vL~~Fa~~gINLtkIeSRP~~~~~~~Y~F~id~eg~---~~d~~v~~aL~~l~~~~ 263 (279)
T PRK11899 202 RNIPAALYKALGGFATNGVNMTKLESYMVGGSFTATQFYADIEGH---PEDRNVALALEELRFFS 263 (279)
T ss_pred CCCCChHHHHHHHHHHcCCCeeeEEeeecCCCCceEEEEEEEECC---CCCHHHHHHHHHHHHhc
Confidence 4789999999999999999999999997754 4567777777653 24456777877775544
No 117
>COG4747 ACT domain-containing protein [General function prediction only]
Probab=68.56 E-value=20 Score=28.53 Aligned_cols=41 Identities=12% Similarity=0.063 Sum_probs=34.4
Q ss_pred EEEEEEcCCCCChHHHHHHHHHhCCceEEEEEEEEeCCEEEE
Q 027547 129 EVILTSGVDDQFIFYEVIRILHQDGAEILNAKFSVVGNTIFH 170 (222)
Q Consensus 129 ~V~v~~~~~~~~~L~~vl~~Le~lgL~V~~a~~s~~~~~~~~ 170 (222)
+|.++.. ++||.|..++..|.+.|+.+...++...+++-+.
T Consensus 5 QISvFlE-Nk~GRL~~~~~~L~eagINiRA~tiAdt~dFGIi 45 (142)
T COG4747 5 QISVFLE-NKPGRLASVANKLKEAGINIRAFTIADTGDFGII 45 (142)
T ss_pred EEEEEec-CCcchHHHHHHHHHHcCCceEEEEeccccCcceE
Confidence 4666665 8999999999999999999999999887776443
No 118
>PF05088 Bac_GDH: Bacterial NAD-glutamate dehydrogenase
Probab=68.41 E-value=36 Score=37.50 Aligned_cols=71 Identities=14% Similarity=0.215 Sum_probs=52.4
Q ss_pred eeEEEEEEcCCCCChHHHHHHHHHhCCceEEEEEEE---EeCC--EEEEEEEEEeccCccccCHHHHHHHHHHHHhcc
Q 027547 127 NLEVILTSGVDDQFIFYEVIRILHQDGAEILNAKFS---VVGN--TIFHVIHAEIRDSMFGFGAAKISERLKGFVSGC 199 (222)
Q Consensus 127 ~v~V~v~~~~~~~~~L~~vl~~Le~lgL~V~~a~~s---~~~~--~~~~ti~~kv~~~~~~~~~~~l~~aL~~~I~~~ 199 (222)
.+.++|.. ..++..|+++|-.|+++||.|+...-. ..++ ..+|.|.++...+. ..+...+.+.+.+++...
T Consensus 489 ~~~lkiy~-~~~~~~Ls~vlPilenlGl~V~~e~~~~i~~~~~~~~~i~~F~l~~~~~~-~~~~~~~~~~~~~a~~~v 564 (1528)
T PF05088_consen 489 RLRLKIYH-PGEPLPLSDVLPILENLGLRVIDERPYEIRRADGRRVWIHDFGLQYPDGD-ALDLDDIRERFEEAFEAV 564 (1528)
T ss_pred eEEEEEEc-CCCCcCHHHHHHHHHhCCCEEEEEecceeecCCCceEEEEEEEEecCCCc-cccHHHHHHHHHHHHHHH
Confidence 46677754 367899999999999999999998744 3233 46778888877765 467777777777766643
No 119
>cd04919 ACT_AK-Hom3_2 ACT domains located C-terminal to the catalytic domain of the aspartokinase (AK) HOM3. This CD includes the second of two ACT domains located C-terminal to the catalytic domain of the aspartokinase (AK) HOM3, a monofunctional class enzyme found in Saccharomyces cerevisiae, and other related ACT domains. AK is the first enzyme in the aspartate metabolic pathway, catalyzes the conversion of aspartate and ATP to aspartylphosphate and ADP, and in fungi, is responsible for the production of threonine, isoleucine and methionine. S. cerevisiae has a single AK, which is regulated by feedback, allosteric inhibition by L-threonine. Recent studies shown that the allosteric transition triggered by binding of threonine to AK involves a large change in the conformation of the native hexameric enzyme that is converted to an inactive one of different shape and substantially smaller hydrodynamic size. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=68.39 E-value=31 Score=22.75 Aligned_cols=29 Identities=10% Similarity=-0.112 Sum_probs=23.7
Q ss_pred CCCChHHHHHHHHHhCCceEEEEEEEEeC
Q 027547 137 DDQFIFYEVIRILHQDGAEILNAKFSVVG 165 (222)
Q Consensus 137 ~~~~~L~~vl~~Le~lgL~V~~a~~s~~~ 165 (222)
.+++.+.+++++|.+.|++|.-...+..+
T Consensus 13 ~~~~~~~~if~~L~~~~I~v~~i~q~~s~ 41 (66)
T cd04919 13 NMIGIAGRMFTTLADHRINIEMISQGASE 41 (66)
T ss_pred CCcCHHHHHHHHHHHCCCCEEEEEecCcc
Confidence 56899999999999999999777654433
No 120
>COG3074 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=67.77 E-value=10 Score=27.26 Aligned_cols=27 Identities=33% Similarity=0.571 Sum_probs=24.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 027547 66 VDEAINYIKMLETKLKECKKRKESLQG 92 (222)
Q Consensus 66 L~~ai~YIk~Lq~~v~~L~~~~~~l~~ 92 (222)
+..||+-|.-||-+|++|+.++..|..
T Consensus 13 iqqAvdTI~LLQmEieELKEknn~l~~ 39 (79)
T COG3074 13 VQQAIDTITLLQMEIEELKEKNNSLSQ 39 (79)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhHhHH
Confidence 789999999999999999999876654
No 121
>cd04868 ACT_AK-like ACT domains C-terminal to the catalytic domain of aspartokinase (AK; 4-L-aspartate-4-phosphotransferase). This CD includes each of two ACT domains C-terminal to the catalytic domain of aspartokinase (AK; 4-L-aspartate-4-phosphotransferase). Typically, AK consists of two ACT domains in a tandem repeat, but the second ACT domain is inserted within the first, resulting in, what is normally the terminal beta strand of ACT2, formed from a region N-terminal of ACT1. AK catalyzes the conversion of aspartate and ATP to aspartylphosphate and ADP. Aspartokinase is the first enzyme in the pathway of the biosynthesis of the aspartate family of amino acids (lysine, threonine, methionine, and isoleucine) and the bacterial cell wall component, meso-diaminopimelate. One mechanism for the regulation of this pathway is by the production of several isoenzymes of aspartokinase with different repressors and allosteric inhibitors. Pairs of ACT domains are proposed to specifically bind am
Probab=67.63 E-value=25 Score=21.84 Aligned_cols=28 Identities=11% Similarity=0.024 Sum_probs=23.1
Q ss_pred CCCChHHHHHHHHHhCCceEEEEEEEEe
Q 027547 137 DDQFIFYEVIRILHQDGAEILNAKFSVV 164 (222)
Q Consensus 137 ~~~~~L~~vl~~Le~lgL~V~~a~~s~~ 164 (222)
..++.+.+++++|.+.++.|.....+..
T Consensus 12 ~~~~~~~~i~~~l~~~~i~i~~i~~~~~ 39 (60)
T cd04868 12 GTPGVAAKIFSALAEAGINVDMISQSES 39 (60)
T ss_pred CCCCHHHHHHHHHHHCCCcEEEEEcCCC
Confidence 3578999999999999999987766543
No 122
>PRK08178 acetolactate synthase 1 regulatory subunit; Reviewed
Probab=67.27 E-value=35 Score=25.88 Aligned_cols=63 Identities=6% Similarity=0.007 Sum_probs=42.5
Q ss_pred EEEEEEcCCCCChHHHHHHHHHhCCceEEEEEEEEeCC--EEEEEEEEEeccCccccCHHHHHHHHHHHHh
Q 027547 129 EVILTSGVDDQFIFYEVIRILHQDGAEILNAKFSVVGN--TIFHVIHAEIRDSMFGFGAAKISERLKGFVS 197 (222)
Q Consensus 129 ~V~v~~~~~~~~~L~~vl~~Le~lgL~V~~a~~s~~~~--~~~~ti~~kv~~~~~~~~~~~l~~aL~~~I~ 197 (222)
-+.+... ++||.|.+|.-.|-.-|..|-+.++...++ ..-.+|.+. + . ...+.+..-|.+++.
T Consensus 10 tisvlv~-N~pGVL~RIaglFsRRgyNIeSLtvg~te~~~iSRmtivv~--~-~--~~i~Qi~kQL~KLid 74 (96)
T PRK08178 10 ILELTVR-NHPGVMSHVCGLFARRAFNVEGILCLPIQDGDKSRIWLLVN--D-D--QRLEQMISQIEKLED 74 (96)
T ss_pred EEEEEEE-CCcCHHHHHHHHHhcCCcCeeeEEEeecCCCCceEEEEEEc--C-c--hHHHHHHHHHhCCcC
Confidence 3555553 889999999999999999998888886544 445555543 2 1 245555555555544
No 123
>PRK11898 prephenate dehydratase; Provisional
Probab=66.12 E-value=34 Score=30.54 Aligned_cols=58 Identities=9% Similarity=0.086 Sum_probs=40.4
Q ss_pred CCCChHHHHHHHHHhCCceEEEEEEEEeCCE-EEEEEEEEeccCccccCHHHHHHHHHHHHh
Q 027547 137 DDQFIFYEVIRILHQDGAEILNAKFSVVGNT-IFHVIHAEIRDSMFGFGAAKISERLKGFVS 197 (222)
Q Consensus 137 ~~~~~L~~vl~~Le~lgL~V~~a~~s~~~~~-~~~ti~~kv~~~~~~~~~~~l~~aL~~~I~ 197 (222)
+++|.|.++|..|...|+.+.+..+-...++ --|.|.+.+... .+...+.++|.++-.
T Consensus 206 ~~pGsL~~~L~~F~~~~INLt~IeSRP~~~~~~~y~F~vd~eg~---~~~~~~~~al~~L~~ 264 (283)
T PRK11898 206 NLPGALYKALSEFAWRGINLTRIESRPTKTGLGTYFFFIDVEGH---IDDVLVAEALKELEA 264 (283)
T ss_pred CCccHHHHHHHHHHHCCCCeeeEecccCCCCCccEEEEEEEEcc---CCCHHHHHHHHHHHH
Confidence 3599999999999999999999999976443 345666665432 233356666655433
No 124
>PRK10738 hypothetical protein; Provisional
Probab=64.50 E-value=15 Score=29.07 Aligned_cols=78 Identities=12% Similarity=0.168 Sum_probs=50.7
Q ss_pred ChHHHHHHHHHhCCceEEEEEEEEeCC------EEEEEEEEEeccCccccCHHHHHHHHHHHHhcccccccc---cCCCC
Q 027547 140 FIFYEVIRILHQDGAEILNAKFSVVGN------TIFHVIHAEIRDSMFGFGAAKISERLKGFVSGCASEGEM---QLPEL 210 (222)
Q Consensus 140 ~~L~~vl~~Le~lgL~V~~a~~s~~~~------~~~~ti~~kv~~~~~~~~~~~l~~aL~~~I~~~~~~~~~---~~~~~ 210 (222)
+.-..+...|+..++++-...+...++ ..|..|+.++.-....++.+.+.+++...+.+.|+=+-| ..|=-
T Consensus 47 Ct~i~v~~~l~k~~~~~~~~~v~v~~~r~~~~p~~f~~I~~~~~~~g~~l~~e~~~rav~ls~~kyC~V~~~l~~~~~I~ 126 (134)
T PRK10738 47 CSAIDVVSILQKGRQDVVDCEVKLTSERREEAPRLFTHINLHFIVTGKDLKDAAVARAVDLSAEKYCSVALMLEKAVNIT 126 (134)
T ss_pred chHHHHHHHHHHCCCCcccEEEEEEEEEcccCCCcccEEEEEEEEECCCCCHHHHHHHHHHHHccCCcHHHHhCCCceEE
Confidence 345578888999999988888776544 244455555433222478889999988888874421111 23445
Q ss_pred CCcccCC
Q 027547 211 WDFEINP 217 (222)
Q Consensus 211 ~~~~~~~ 217 (222)
|.|+||+
T Consensus 127 ~~~~i~~ 133 (134)
T PRK10738 127 HSYEVIA 133 (134)
T ss_pred EEEEEec
Confidence 8888876
No 125
>cd04916 ACT_AKiii-YclM-BS_2 ACT domains located C-terminal to the catalytic domain of the lysine plus threonine-sensitive aspartokinase isoenzyme AKIII. This CD includes the second of two ACT domains located C-terminal to the catalytic domain of the lysine plus threonine-sensitive aspartokinase isoenzyme AKIII, a monofunctional class enzyme found in Bacilli (Bacillus subtilis (BS) YclM) and Clostridia species. Aspartokinase is the first enzyme in the aspartate metabolic pathway and catalyzes the conversion of aspartate and ATP to aspartylphosphate and ADP. B. subtilis YclM is reported to be a single polypeptide of 50 kD. AKIII from B. subtilis strain 168 is induced by lysine and repressed by threonine and it is synergistically inhibited by lysine and threonine. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=63.93 E-value=38 Score=22.14 Aligned_cols=27 Identities=11% Similarity=-0.002 Sum_probs=22.7
Q ss_pred CCCChHHHHHHHHHhCCceEEEEEEEE
Q 027547 137 DDQFIFYEVIRILHQDGAEILNAKFSV 163 (222)
Q Consensus 137 ~~~~~L~~vl~~Le~lgL~V~~a~~s~ 163 (222)
..++.+.+++.+|.+.|++|.-.+.+.
T Consensus 13 ~~~~~~~~i~~~L~~~~i~v~~i~~~~ 39 (66)
T cd04916 13 NTVGVSARATAALAKAGINIRMINQGS 39 (66)
T ss_pred CCccHHHHHHHHHHHCCCCEEEEEecC
Confidence 468999999999999999997776543
No 126
>COG0788 PurU Formyltetrahydrofolate hydrolase [Nucleotide transport and metabolism]
Probab=61.88 E-value=50 Score=29.76 Aligned_cols=71 Identities=10% Similarity=0.065 Sum_probs=49.0
Q ss_pred eEEEEEEcCCCCChHHHHHHHHHhCCceEEEEEEEEeCCEEEEEEEEEeccCccccCHHHHHHHHHHHHhcc
Q 027547 128 LEVILTSGVDDQFIFYEVIRILHQDGAEILNAKFSVVGNTIFHVIHAEIRDSMFGFGAAKISERLKGFVSGC 199 (222)
Q Consensus 128 v~V~v~~~~~~~~~L~~vl~~Le~lgL~V~~a~~s~~~~~~~~ti~~kv~~~~~~~~~~~l~~aL~~~I~~~ 199 (222)
..+++.| ++++|+...|-.-|-++|..|+.++-.....+-.+-+.++........+.+.+.+++..+...+
T Consensus 8 ~~LtvsC-pd~~GiVaais~~l~~~g~NI~~~~qf~D~~~g~FFmR~~f~~~~~~~~~~~l~~~f~~~a~~f 78 (287)
T COG0788 8 FILTVSC-PDQPGIVAAISGFLAEHGCNIVDSDQFDDPETGRFFMRVEFEGEGGPLDREALRAAFAPLAEEF 78 (287)
T ss_pred eEEEEec-CCCCCcHHHHHHHHHHcCCceeecccccccccCeEEEEEEEecCCCcccHHHHHHHHHHHHHhh
Confidence 3455656 6899999999999999999999999774432322333444444332367888888888765533
No 127
>COG0077 PheA Prephenate dehydratase [Amino acid transport and metabolism]
Probab=60.22 E-value=51 Score=29.67 Aligned_cols=61 Identities=8% Similarity=0.125 Sum_probs=47.7
Q ss_pred CCCCChHHHHHHHHHhCCceEEEEEEEEeCC-EEEEEEEEEeccCccccCHHHHHHHHHHHHhcc
Q 027547 136 VDDQFIFYEVIRILHQDGAEILNAKFSVVGN-TIFHVIHAEIRDSMFGFGAAKISERLKGFVSGC 199 (222)
Q Consensus 136 ~~~~~~L~~vl~~Le~lgL~V~~a~~s~~~~-~~~~ti~~kv~~~~~~~~~~~l~~aL~~~I~~~ 199 (222)
+++||.|+++|..|...|++.....+-.... .--|.|.+.+.... +...++++|.++=..+
T Consensus 202 ~n~PGaL~~~L~~Fa~~gINlTkIESRP~k~~~~~Y~F~iD~eg~~---~~~~v~~AL~el~~~t 263 (279)
T COG0077 202 PNKPGALYKALGVFAKRGINLTKIESRPLKTGLGEYLFFIDIEGHI---DDPLVKEALEELKEIT 263 (279)
T ss_pred CCCCchHHHHHHHHHHcCcceeeEeecccCCCCeeEEEEEEEecCc---CcHhHHHHHHHHHhhe
Confidence 4889999999999999999999999987654 45577777776533 4477888887765544
No 128
>PF14689 SPOB_a: Sensor_kinase_SpoOB-type, alpha-helical domain; PDB: 1F51_C 2FTK_B 1IXM_B.
Probab=60.12 E-value=30 Score=23.65 Aligned_cols=41 Identities=27% Similarity=0.361 Sum_probs=33.5
Q ss_pred HHHHHHHHHHHHHHHhcCCCCCCCCCCChhHHHHHHHHHHHHHHHHHHHHH
Q 027547 34 KNRRDQMKNLYSTLKSLLPNQPSKEELSLPDQVDEAINYIKMLETKLKECK 84 (222)
Q Consensus 34 R~RR~~mn~~~~~LrsLlP~~~~~~k~si~~iL~~ai~YIk~Lq~~v~~L~ 84 (222)
|.-|-.+...++.+..++ ... . .++|.+||+++-+.++...
T Consensus 17 R~~RHD~~NhLqvI~gll----qlg---~---~~~a~eYi~~~~~~~~~~s 57 (62)
T PF14689_consen 17 RAQRHDFLNHLQVIYGLL----QLG---K---YEEAKEYIKELSKDLQQES 57 (62)
T ss_dssp HHHHHHHHHHHHHHHHHH----HTT-------HHHHHHHHHHHHHHHHHHH
T ss_pred HHHhHHHHHHHHHHHHHH----HCC---C---HHHHHHHHHHHHHHHHHHH
Confidence 677888999999999998 222 2 8999999999999888773
No 129
>PRK15422 septal ring assembly protein ZapB; Provisional
Probab=59.06 E-value=19 Score=26.42 Aligned_cols=27 Identities=33% Similarity=0.571 Sum_probs=24.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 027547 66 VDEAINYIKMLETKLKECKKRKESLQG 92 (222)
Q Consensus 66 L~~ai~YIk~Lq~~v~~L~~~~~~l~~ 92 (222)
+..||+-|.-||-+|++|+.++..|..
T Consensus 13 IqqAvdtI~LLqmEieELKekn~~L~~ 39 (79)
T PRK15422 13 VQQAIDTITLLQMEIEELKEKNNSLSQ 39 (79)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 889999999999999999999877765
No 130
>KOG3582 consensus Mlx interactors and related transcription factors [Transcription]
Probab=58.91 E-value=3.9 Score=41.05 Aligned_cols=67 Identities=21% Similarity=0.307 Sum_probs=52.5
Q ss_pred chhhhhhHHHHHHHHHHHHHHHHHHhcCCCCCCC--CCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 027547 24 PTKIERKTIEKNRRDQMKNLYSTLKSLLPNQPSK--EELSLPDQVDEAINYIKMLETKLKECKKRKESL 90 (222)
Q Consensus 24 ~~~~~h~~~ER~RR~~mn~~~~~LrsLlP~~~~~--~k~si~~iL~~ai~YIk~Lq~~v~~L~~~~~~l 90 (222)
.+.+.|..+|.+||..++-+|..|.++.-+.... -|.+....+...+.||..++.+...+.++-..|
T Consensus 650 ~r~it~~Sa~qkrr~n~kl~~~~~Ns~~Sn~~~l~s~k~t~~~~~q~~vhYi~~t~~e~~~v~~e~~~l 718 (856)
T KOG3582|consen 650 NRPITHISAEQKRRFNIKLQFDVLNSLSSNSSSLSSIKTTNSNSLQKTVHYINVTQQERVPVQEEAHSL 718 (856)
T ss_pred CCcccCccHHHHHHhhHHhhhHhhhhhccCcccccchhhhccccccCceeeeeccchhccccchhhhhh
Confidence 5788999999999999999999999998776542 244555558999999999987777666554333
No 131
>cd04918 ACT_AK1-AT_2 ACT domains located C-terminal to the catalytic domain of a monofunctional, lysine-sensitive, plant aspartate kinase 1 (AK1). This CD includes the second of two ACT domains located C-terminal to the catalytic domain of a monofunctional, lysine-sensitive, plant aspartate kinase 1 (AK1), which can be synergistically inhibited by S-adenosylmethionine (SAM). This isoenzyme is found in higher plants, Arabidopsis thaliana (AT) and Zea mays, and also in Chlorophyta. In its inactive state, Arabidopsis AK1 binds the effectors lysine and SAM (two molecules each) at the interface of two ACT1 domain subunits. The second ACT domain (ACT2), this CD, does not interact with an effector. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=58.42 E-value=44 Score=22.55 Aligned_cols=35 Identities=11% Similarity=0.153 Sum_probs=27.2
Q ss_pred CCCChHHHHHHHHHhCCceEEEEEEEEeCCEEEEE
Q 027547 137 DDQFIFYEVIRILHQDGAEILNAKFSVVGNTIFHV 171 (222)
Q Consensus 137 ~~~~~L~~vl~~Le~lgL~V~~a~~s~~~~~~~~t 171 (222)
..++.+.+++++|.+.|+.|.-.+.++.+..+.+.
T Consensus 12 ~~~~~~~~i~~aL~~~~I~v~~i~~g~s~~sis~~ 46 (65)
T cd04918 12 RSSLILERAFHVLYTKGVNVQMISQGASKVNISLI 46 (65)
T ss_pred CCccHHHHHHHHHHHCCCCEEEEEecCccceEEEE
Confidence 35789999999999999999888776655544443
No 132
>cd04924 ACT_AK-Arch_2 ACT domains of a monofunctional aspartokinase found mostly in Archaea species (ACT_AK-Arch_2). Included in this CD is the second of two ACT domains of a monofunctional aspartokinase found mostly in Archaea species (ACT_AK-Arch_2). The first or N-terminal ACT domain of these proteins cluster with the ThrA-like ACT 1 domains (ACT_AKi-HSDH-ThrA-like_1) which includes the threonine-sensitive archaeal Methanococcus jannaschii aspartokinase ACT 1 domain. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=58.18 E-value=49 Score=21.53 Aligned_cols=27 Identities=11% Similarity=0.062 Sum_probs=22.3
Q ss_pred CCCChHHHHHHHHHhCCceEEEEEEEE
Q 027547 137 DDQFIFYEVIRILHQDGAEILNAKFSV 163 (222)
Q Consensus 137 ~~~~~L~~vl~~Le~lgL~V~~a~~s~ 163 (222)
+.++.+.+++++|.+.|+.|.-.+.+.
T Consensus 13 ~~~~~~~~i~~~L~~~~I~v~~i~q~~ 39 (66)
T cd04924 13 GTPGVAGRVFGALGKAGINVIMISQGS 39 (66)
T ss_pred CCccHHHHHHHHHHHCCCCEEEEEecC
Confidence 457899999999999999997666543
No 133
>COG1707 ACT domain-containing protein [General function prediction only]
Probab=57.86 E-value=30 Score=29.19 Aligned_cols=61 Identities=20% Similarity=0.226 Sum_probs=41.8
Q ss_pred EEEEEcCCCCChHHHHHHHHHhCCceEEEEEEEEeCCEEEEEEEEEeccCccccCHHHHHHHHHH
Q 027547 130 VILTSGVDDQFIFYEVIRILHQDGAEILNAKFSVVGNTIFHVIHAEIRDSMFGFGAAKISERLKG 194 (222)
Q Consensus 130 V~v~~~~~~~~~L~~vl~~Le~lgL~V~~a~~s~~~~~~~~ti~~kv~~~~~~~~~~~l~~aL~~ 194 (222)
+.+... +++|.|.++.-.+-++|-++..++-..-++--...|..++.+.. +.+.+.++|+.
T Consensus 5 lsi~~e-nk~GvL~~ltgiiae~ggNIt~~q~~~~~~g~~~~iYmEiEgi~---d~e~l~~~lks 65 (218)
T COG1707 5 LSIIAE-NKPGVLRDLTGIIAEEGGNITYAQQFLEKDGEKALIYMEIEGID---DFEKLLERLKS 65 (218)
T ss_pred eEEEee-cCccHHHHHHHHHHhcCCceEeeehhhhccCceEEEEEEeeCCC---CHHHHHHHhhc
Confidence 344443 78999999999999999999999976544322333445555432 67777776654
No 134
>PF06005 DUF904: Protein of unknown function (DUF904); InterPro: IPR009252 Cell division protein ZapB is a non-essential, abundant cell division factor that is required for proper Z-ring formation. It is recruited early to the divisome by direct interaction with FtsZ, stimulating Z-ring assembly and thereby promoting cell division earlier in the cell cycle. Its recruitment to the Z-ring requires functional FtsA or ZipA.; GO: 0000917 barrier septum formation, 0043093 cytokinesis by binary fission, 0005737 cytoplasm; PDB: 2JEE_A.
Probab=57.45 E-value=23 Score=25.36 Aligned_cols=26 Identities=23% Similarity=0.484 Sum_probs=22.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhh
Q 027547 66 VDEAINYIKMLETKLKECKKRKESLQ 91 (222)
Q Consensus 66 L~~ai~YIk~Lq~~v~~L~~~~~~l~ 91 (222)
+..||+-|..||.++++|+.++..+.
T Consensus 13 i~~aveti~~Lq~e~eeLke~n~~L~ 38 (72)
T PF06005_consen 13 IQQAVETIALLQMENEELKEKNNELK 38 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHH
Confidence 88999999999999999999865554
No 135
>PRK10622 pheA bifunctional chorismate mutase/prephenate dehydratase; Provisional
Probab=57.38 E-value=64 Score=30.23 Aligned_cols=68 Identities=9% Similarity=0.068 Sum_probs=50.3
Q ss_pred CCCCChHHHHHHHHHhCCceEEEEEEEEeCCE-EEEEEEEEeccCccccCHHHHHHHHHHHHhccc---cccccc
Q 027547 136 VDDQFIFYEVIRILHQDGAEILNAKFSVVGNT-IFHVIHAEIRDSMFGFGAAKISERLKGFVSGCA---SEGEMQ 206 (222)
Q Consensus 136 ~~~~~~L~~vl~~Le~lgL~V~~a~~s~~~~~-~~~ti~~kv~~~~~~~~~~~l~~aL~~~I~~~~---~~~~~~ 206 (222)
.++||.|.++|..|...|++.....+-...+. .-|.|.+.+.... ....+.++|.++-..+. ..+..|
T Consensus 305 ~~~pGaL~~~L~~Fa~~giNLtkIeSRP~~~~~~~Y~Ffid~eg~~---~d~~~~~aL~~l~~~~~~~kvLGsYp 376 (386)
T PRK10622 305 GQQAGALVEALLVLRNHNLIMTKLESRPIHGNPWEEMFYLDVQANL---RSAEMQKALKELGEITRSLKVLGCYP 376 (386)
T ss_pred CCCCcHHHHHHHHHHHcCCCeeEEEeeecCCCCceEEEEEEEeCCC---CCHHHHHHHHHHHHhcCcEEEeeeec
Confidence 47899999999999999999999999976554 5677777776532 34567777777655443 555554
No 136
>COG2061 ACT-domain-containing protein, predicted allosteric regulator of homoserine dehydrogenase [Amino acid transport and metabolism]
Probab=57.30 E-value=64 Score=26.78 Aligned_cols=42 Identities=24% Similarity=0.169 Sum_probs=36.6
Q ss_pred CCCCChHHHHHHHHHhCCceEEEEEEEEe---CCEEEEEEEEEec
Q 027547 136 VDDQFIFYEVIRILHQDGAEILNAKFSVV---GNTIFHVIHAEIR 177 (222)
Q Consensus 136 ~~~~~~L~~vl~~Le~lgL~V~~a~~s~~---~~~~~~ti~~kv~ 177 (222)
+++||.|+++|+=|-+.|.+|+++..+.. ++++-..|..++.
T Consensus 13 ~D~PGQLl~vLqPls~~g~NiItIiH~r~kk~g~r~pV~i~~~~d 57 (170)
T COG2061 13 KDKPGQLLKVLQPLSKTGANIITIIHSRDKKYGPRVPVQIVFEGD 57 (170)
T ss_pred cCCCcchhhhhcchhhcCccEEEEEeecCcccCCceeEEEEEEec
Confidence 58899999999999999999999999866 7787777777665
No 137
>PRK08526 threonine dehydratase; Provisional
Probab=56.37 E-value=67 Score=30.10 Aligned_cols=56 Identities=18% Similarity=0.230 Sum_probs=40.7
Q ss_pred CCCCChHHHHHHHHHhCCceEEEEEEEEeCC-----EEEEEEEEEeccCccccCHHHHHHHHHH
Q 027547 136 VDDQFIFYEVIRILHQDGAEILNAKFSVVGN-----TIFHVIHAEIRDSMFGFGAAKISERLKG 194 (222)
Q Consensus 136 ~~~~~~L~~vl~~Le~lgL~V~~a~~s~~~~-----~~~~ti~~kv~~~~~~~~~~~l~~aL~~ 194 (222)
+++||.|.+++..+-+.+.+|+......... .+...+.++..+.. ..+.|.++|++
T Consensus 334 ~d~pg~l~~~~~~~~~~~~~i~~~~~~r~~~~~~~~~~~~~~~~e~~~~~---~~~~~~~~l~~ 394 (403)
T PRK08526 334 VDKPGALMGLTDILKEANANIVKIDYDRFSTKLDYGDAMISITLETKGKE---HQEEIRKILTE 394 (403)
T ss_pred CCCCCHHHHHHHHHccCCCcEEEEEEEeccCCCCCccEEEEEEEEeCCHH---HHHHHHHHHHH
Confidence 5889999999999999999999999865332 35556666665422 45566666654
No 138
>cd04915 ACT_AK-Ectoine_2 ACT domains located C-terminal to the catalytic domain of the aspartokinase of the ectoine (1,4,5,6-tetrahydro-2-methyl pyrimidine-4-carboxylate) biosynthetic pathway. This CD includes the second of two ACT domains located C-terminal to the catalytic domain of the aspartokinase of the ectoine (1,4,5,6-tetrahydro-2-methyl pyrimidine-4-carboxylate) biosynthetic pathway found in Methylomicrobium alcaliphilum, Vibrio cholerae, and various other halotolerant or halophilic bacteria. Bacteria exposed to hyperosmotic stress accumulate organic solutes called 'compatible solutes' of which ectoine, a heterocyclic amino acid, is one. Apart from its osmotic function, ectoine also exhibits a protective effect on proteins, nucleic acids and membranes against a variety of stress factors. de novo synthesis of ectoine starts with the phosphorylation of L-aspartate and shares its first two enzymatic steps with the biosynthesis of amino acids of the aspartate family: aspartokinas
Probab=52.26 E-value=52 Score=22.39 Aligned_cols=33 Identities=15% Similarity=0.110 Sum_probs=25.8
Q ss_pred CCChHHHHHHHHHhCCceEEEEEEEEeCCEEEE
Q 027547 138 DQFIFYEVIRILHQDGAEILNAKFSVVGNTIFH 170 (222)
Q Consensus 138 ~~~~L~~vl~~Le~lgL~V~~a~~s~~~~~~~~ 170 (222)
.++.+.+++++|.+.|++|...+.+..+-.+.+
T Consensus 14 ~~gv~~ki~~~L~~~~I~v~~i~~~~s~~~is~ 46 (66)
T cd04915 14 TPGVLARGLAALAEAGIEPIAAHQSMRNVDVQF 46 (66)
T ss_pred cchHHHHHHHHHHHCCCCEEEEEecCCeeEEEE
Confidence 578999999999999999987777665444333
No 139
>cd04937 ACT_AKi-DapG-BS_2 ACT domains of the diaminopimelate-sensitive aspartokinase (AK) isoenzyme AKI. This CD includes the C-terminal of the two ACT domains of the diaminopimelate-sensitive aspartokinase (AK) isoenzyme AKI, a monofunctional class enzyme found in Bacilli (Bacillus subtilis (BS) strain 168), Clostridia, and Actinobacteria bacterial species. In B. subtilis, the regulation of the diaminopimelate-lysine biosynthetic pathway involves dual control by diaminopimelate and lysine, effected through separate diaminopimelate- and lysine-sensitive AK isoenzymes. AKI activity is invariant during the exponential and stationary phases of growth and is not altered by addition of amino acids to the growth medium. The role of this isoenzyme is most likely to provide a constant level of aspartyl-beta-phosphate for the biosynthesis of diaminopimelate for peptidoglycan synthesis and dipicolinate during sporulation. The BS AKI is tetrameric consisting of two alpha and two beta subunits; th
Probab=52.12 E-value=69 Score=21.38 Aligned_cols=22 Identities=23% Similarity=0.395 Sum_probs=19.9
Q ss_pred CCCChHHHHHHHHHhCCceEEE
Q 027547 137 DDQFIFYEVIRILHQDGAEILN 158 (222)
Q Consensus 137 ~~~~~L~~vl~~Le~lgL~V~~ 158 (222)
..++.+.+++++|.+.|+.|..
T Consensus 13 ~~~gi~~~if~aL~~~~I~v~~ 34 (64)
T cd04937 13 GVPGVMAKIVGALSKEGIEILQ 34 (64)
T ss_pred CCcCHHHHHHHHHHHCCCCEEE
Confidence 5689999999999999999963
No 140
>cd04892 ACT_AK-like_2 ACT domains C-terminal to the catalytic domain of aspartokinase (AK; 4-L-aspartate-4-phosphotransferase). This CD includes the second of two ACT domains C-terminal to the catalytic domain of aspartokinase (AK; 4-L-aspartate-4-phosphotransferase). The exception in this group, is the inclusion of the first ACT domain of the bifunctional aspartokinase - homoserine dehydrogenase-like enzyme group (ACT_AKi-HSDH-ThrA-like_1) which includes the monofunctional, threonine-sensitive, aspartokinase found in Methanococcus jannaschii and other related archaeal species. AK catalyzes the conversion of aspartate and ATP to aspartylphosphate and ADP. AK is the first enzyme in the pathway of the biosynthesis of the aspartate family of amino acids (lysine, threonine, methionine, and isoleucine) and the bacterial cell wall component, meso-diaminopimelate. One mechanism for the regulation of this pathway is by the production of several isoenzymes of AK with different repressors an
Probab=50.86 E-value=61 Score=20.43 Aligned_cols=27 Identities=11% Similarity=0.111 Sum_probs=23.1
Q ss_pred CCCChHHHHHHHHHhCCceEEEEEEEE
Q 027547 137 DDQFIFYEVIRILHQDGAEILNAKFSV 163 (222)
Q Consensus 137 ~~~~~L~~vl~~Le~lgL~V~~a~~s~ 163 (222)
+.++.+.+++++|.+.++.+.....+.
T Consensus 12 ~~~~~~~~i~~~l~~~~i~v~~i~~~~ 38 (65)
T cd04892 12 GTPGVAARIFSALAEAGINIIMISQGS 38 (65)
T ss_pred CCccHHHHHHHHHHHCCCcEEEEEcCC
Confidence 457899999999999999998887654
No 141
>PF02344 Myc-LZ: Myc leucine zipper domain; InterPro: IPR003327 This family consists of the leucine zipper dimerisation domain found in both cellular c-Myc proto-oncogenes and viral v-Myc oncogenes. Dimerisation via the leucine zipper motif with other basic helix-loop-helix-leucine zipper (b/HLH/lz) proteins is required for efficient DNA binding []. The Myc-Max dimer is a transactivating complex activating expression of growth related genes promoting cell proliferation. The dimerisation is facilitated via interdigitating leucine residues every 7th position of the alpha helix. Like charge repulsion of adjacent residues in this region preturbs the formation of homodimers with heterodimers being promoted by opposing charge attractions. It has been demonstrated that in transgenic mice the balance between oncogene-induced proliferation and apoptosis in a given tissue can be a critical determinant in the initiation and maintenance of the tumor [].; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus; PDB: 1NKP_D 1A93_A 2A93_A.
Probab=50.38 E-value=19 Score=21.78 Aligned_cols=18 Identities=28% Similarity=0.482 Sum_probs=13.9
Q ss_pred HHHHHHHHHHHHHHHHHh
Q 027547 32 IEKNRRDQMKNLYSTLKS 49 (222)
Q Consensus 32 ~ER~RR~~mn~~~~~Lrs 49 (222)
.=|+||++++..+..||+
T Consensus 12 qLrrr~eqLK~kLeqlrn 29 (32)
T PF02344_consen 12 QLRRRREQLKHKLEQLRN 29 (32)
T ss_dssp HHHHHHHHHHHHHHHH--
T ss_pred HHHHHHHHHHHHHHHHhc
Confidence 347899999999999986
No 142
>PF07485 DUF1529: Domain of Unknown Function (DUF1259); InterPro: IPR011094 This family is the lppY/lpqO homologue family. They are related to 'probable conserved lipoproteins' LppY and LpqO from Mycobacterium bovis.
Probab=50.27 E-value=83 Score=24.81 Aligned_cols=52 Identities=17% Similarity=0.160 Sum_probs=38.9
Q ss_pred ChHHHHHHHHHhCCceEEEEEEEEeCC--EEEEEEEEEeccCccccCHHHHHHHHHHHHh
Q 027547 140 FIFYEVIRILHQDGAEILNAKFSVVGN--TIFHVIHAEIRDSMFGFGAAKISERLKGFVS 197 (222)
Q Consensus 140 ~~L~~vl~~Le~lgL~V~~a~~s~~~~--~~~~ti~~kv~~~~~~~~~~~l~~aL~~~I~ 197 (222)
.-+-.++++|.+.|++|...+-.-..+ +++| +|.... -++..+.++|+++++
T Consensus 68 ~EV~pvi~aL~~~GI~vtAlHNH~l~e~Prl~y-mH~~~~-----gdp~~lA~~vr~Ald 121 (123)
T PF07485_consen 68 DEVNPVISALRKNGIEVTALHNHWLFEQPRLFY-MHIWGV-----GDPAKLARKVRAALD 121 (123)
T ss_pred HHHHHHHHHHHHCCceEEEEecccccCCCCEEE-EEEEec-----CCHHHHHHHHHHHHh
Confidence 356689999999999999998664433 3444 565533 378999999999886
No 143
>PF03469 XH: XH domain; InterPro: IPR005379 The XH (rice gene X Homology) domain is found in a family of plant proteins including Oryza sativa (Rice) Q9SBW2 from SWISSPROT. The molecular function of these proteins is unknown, however these proteins usually contain an XS domain (IPR005380 from INTERPRO) that is also found in the PTGS protein SGS3. As the XS and XH domains are fused in most of these proteins, these two domains may interact. The XH domain is between 124 and 145 residues in length and contains a conserved glutamate residue that may be functionally important [].
Probab=47.95 E-value=17 Score=29.13 Aligned_cols=31 Identities=23% Similarity=0.518 Sum_probs=21.5
Q ss_pred HHHHHHHHHHHHhcccccccccCCCCCCcccC
Q 027547 185 AAKISERLKGFVSGCASEGEMQLPELWDFEIN 216 (222)
Q Consensus 185 ~~~l~~aL~~~I~~~~~~~~~~~~~~~~~~~~ 216 (222)
...|..||.++-. +-.++-.+.||||+|.=+
T Consensus 79 y~aV~~Al~E~nE-yN~sGry~v~eLWN~ke~ 109 (132)
T PF03469_consen 79 YNAVTKALLEINE-YNPSGRYPVPELWNFKEG 109 (132)
T ss_pred HHHHHHHHHHHHH-hccCCCCCCccCCccccc
Confidence 3456666666544 346788889999999755
No 144
>cd04923 ACT_AK-LysC-DapG-like_2 ACT domains of the lysine-sensitive aspartokinase isoenzyme AKII of Bacillus subtilis (BS) strain 168 and related domains. This CD includes the C-terminal of the two ACT domains of the lysine-sensitive aspartokinase isoenzyme AKII of Bacillus subtilis (BS) strain 168, and the lysine plus threonine-sensitive aspartokinase of Corynebacterium glutamicum, as well as, the second and fourth, of four, ACT domains present in cyanobacteria AK. Also included are the C-terminal of the two ACT domains of the diaminopimelate-sensitive aspartokinase isoenzyme AKI found in Bacilli (B. subtilis strain 168), Clostridia, and Actinobacteria bacterial species. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=47.70 E-value=72 Score=20.35 Aligned_cols=26 Identities=15% Similarity=0.123 Sum_probs=22.1
Q ss_pred CCCChHHHHHHHHHhCCceEEEEEEE
Q 027547 137 DDQFIFYEVIRILHQDGAEILNAKFS 162 (222)
Q Consensus 137 ~~~~~L~~vl~~Le~lgL~V~~a~~s 162 (222)
+.++.+.+++++|.+.++.|...+.+
T Consensus 12 ~~~~~~~~i~~~L~~~~i~v~~i~~s 37 (63)
T cd04923 12 SHPGVAAKMFKALAEAGINIEMISTS 37 (63)
T ss_pred CCccHHHHHHHHHHHCCCCEEEEEcc
Confidence 45789999999999999999887643
No 145
>PF02120 Flg_hook: Flagellar hook-length control protein FliK; InterPro: IPR021136 This entry represents the C-terminal domain of the flagellar hook-length control protein FliK. This entry also includes YscP of the Yersinia type III secretion system, and equivalent proteins in other pathogenic bacterial type III secretion systems. During flagellar morphogenesis in Salmonella typhimurium and Escherichia coli, flagellar hook-length control protein (FliK) controls the length of the hook by directly measuring the hook length [, ]. It is considered unlikely that FliK functions as a molecular ruler for determining hook length, but that it is more likely to be employing a novel mechanism. The deduced amino acid sequences of FliK proteins from S. typhimurium and E. coli have molecular masses of 41,748 and 39,246 Da, respectively, and are fairly hydrophilic []. Sequence comparison reveals around 50% identity, with greatest conservation in the C-terminal region, with 71% identity in the last 154 amino acids - mutagenesis of this conserved region completely abolishes motility. The central and C-terminal regions are rich in proline and glutamine respectively; it is thought that they may constitute distinct domains [].; PDB: 2RRL_A.
Probab=47.56 E-value=71 Score=22.40 Aligned_cols=47 Identities=26% Similarity=0.320 Sum_probs=32.9
Q ss_pred eeEEEeeCCeeEEEEEEcCCC-----CChHHHHHHHHHhCCceEEEEEEEEe
Q 027547 118 EIEIHEMGSNLEVILTSGVDD-----QFIFYEVIRILHQDGAEILNAKFSVV 164 (222)
Q Consensus 118 ~VeV~~~g~~v~V~v~~~~~~-----~~~L~~vl~~Le~lgL~V~~a~~s~~ 164 (222)
.|.+...+..+.|.+.++... ...+..+-++|...|+.+.+.+++..
T Consensus 28 ~v~l~~~~~~l~v~~~~~~~~~~~~L~~~~~~L~~~L~~~G~~~~~~~v~~~ 79 (85)
T PF02120_consen 28 EVKLRLQGGNLSVQFTAENPETKELLRQNLPELKERLQAQGLEVVNLSVSQG 79 (85)
T ss_dssp EEEEEEETTEEEEEEE--SSHHHHHHHHTHHHHHHHHHTTT-EEEEEEEESS
T ss_pred EEEEEEeCCEEEEEEEECCHHHHHHHHHHHHHHHHHHHHCCCCeEEEEEEEC
Confidence 566667778889998875321 24567899999999999998887743
No 146
>COG0317 SpoT Guanosine polyphosphate pyrophosphohydrolases/synthetases [Signal transduction mechanisms / Transcription]
Probab=45.13 E-value=84 Score=31.96 Aligned_cols=49 Identities=10% Similarity=0.195 Sum_probs=39.1
Q ss_pred EEEEEEcCCCCChHHHHHHHHHhCCceEEEEEEEEe-CCEEEEEEEEEecc
Q 027547 129 EVILTSGVDDQFIFYEVIRILHQDGAEILNAKFSVV-GNTIFHVIHAEIRD 178 (222)
Q Consensus 129 ~V~v~~~~~~~~~L~~vl~~Le~lgL~V~~a~~s~~-~~~~~~ti~~kv~~ 178 (222)
+|.|. ..+++|+|-+|+++|-+.+..|.+++.... ++.+...|..++.+
T Consensus 629 ~i~v~-~~~r~glL~~i~~~i~~~~~ni~~v~~~~~~~~~~~~~~~i~v~n 678 (701)
T COG0317 629 DIEIR-AYDRSGLLRDVSQVLANEKINVLGVNTRSDKDQFATMQFTIEVKN 678 (701)
T ss_pred EEEEE-EccccchHHHHHHHHHhCCCceEEeeccccCCceEEEEEEEEECc
Confidence 34443 358899999999999999999999999886 45566677777765
No 147
>PF05687 DUF822: Plant protein of unknown function (DUF822); InterPro: IPR008540 This group of proteins contains members of the BZR1/LAT61 family of plant transcriptional repressors involved in controlling the response to Brassinosteroids (BRs). BRs are plant hormones that play essential roles in growth and development. BZR1 binds directly to DNA repressing the synthesis of genes involved in BR synthesis. Phosphorylation of BZR1 by BIN1 targets BZR1 to the 20S proteosome, while dephosphorylation leads to nuclear accumulation of BZR1 [].
Probab=44.36 E-value=32 Score=28.11 Aligned_cols=27 Identities=19% Similarity=0.352 Sum_probs=23.4
Q ss_pred chhhhhhHHHHHHHHHHHHHHHHHHhc
Q 027547 24 PTKIERKTIEKNRRDQMKNLYSTLKSL 50 (222)
Q Consensus 24 ~~~~~h~~~ER~RR~~mn~~~~~LrsL 50 (222)
..|.+.+..||+||.--...|.-||.+
T Consensus 10 kErEnnk~RERrRRAIaakIfaGLR~~ 36 (150)
T PF05687_consen 10 KERENNKRRERRRRAIAAKIFAGLRAH 36 (150)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 457778889999999999999999986
No 148
>cd04891 ACT_AK-LysC-DapG-like_1 ACT domains of the lysine-sensitive aspartokinase isoenzyme AKII and related proteins. This CD includes the N-terminal of the two ACT domains of the lysine-sensitive aspartokinase isoenzyme AKII of Bacillus subtilis (BS) strain 168, and the lysine plus threonine-sensitive aspartokinase of Corynebacterium glutamicum, as well as, the first and third, of four, ACT domains present in cyanobacteria AK. Also included are the N-terminal of the two ACT domains of the diaminopimelate-sensitive aspartokinase isoenzyme AKI found in Bacilli (Bacillus subtilis strain 168), Clostridia, and Actinobacteria bacterial species. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=43.38 E-value=81 Score=19.66 Aligned_cols=27 Identities=15% Similarity=0.079 Sum_probs=23.1
Q ss_pred CCCCChHHHHHHHHHhCCceEEEEEEE
Q 027547 136 VDDQFIFYEVIRILHQDGAEILNAKFS 162 (222)
Q Consensus 136 ~~~~~~L~~vl~~Le~lgL~V~~a~~s 162 (222)
.+.++.+.+++++|.+.++.+...+..
T Consensus 9 ~~~~~~~~~i~~~L~~~~i~i~~i~~~ 35 (61)
T cd04891 9 PDKPGVAAKIFSALAEAGINVDMIVQS 35 (61)
T ss_pred CCCCcHHHHHHHHHHHcCCcEEEEEEc
Confidence 466899999999999999999877654
No 149
>PF13840 ACT_7: ACT domain ; PDB: 3S1T_A 1ZHV_A 3AB4_K 3AB2_O 2DTJ_A 3AAW_A 2RE1_B 3MAH_A 1ZVP_D.
Probab=42.90 E-value=1.1e+02 Score=20.85 Aligned_cols=24 Identities=17% Similarity=0.192 Sum_probs=21.1
Q ss_pred CCCChHHHHHHHHHhCCceEEEEE
Q 027547 137 DDQFIFYEVIRILHQDGAEILNAK 160 (222)
Q Consensus 137 ~~~~~L~~vl~~Le~lgL~V~~a~ 160 (222)
+.+|.+.++..+|-+.|+.|...+
T Consensus 19 ~~~Gv~a~i~~~La~~~I~i~~is 42 (65)
T PF13840_consen 19 DVPGVAAKIFSALAEAGINIFMIS 42 (65)
T ss_dssp TSHHHHHHHHHHHHHTTS-ECEEE
T ss_pred CcccHHHHHHHHHHHCCCCEEEEE
Confidence 478999999999999999998887
No 150
>TIGR01834 PHA_synth_III_E poly(R)-hydroxyalkanoic acid synthase, class III, PhaE subunit. This model represents the PhaE subunit of the heterodimeric class (class III) of polymerase for poly(R)-hydroxyalkanoic acids (PHAs), carbon and energy storage polymers of many bacteria. The most common PHA is polyhydroxybutyrate but about 150 different constituent hydroxyalkanoic acids (HAs) have been identified in various species. This model must be designated subfamily to indicate the heterogeneity of PHAs.
Probab=42.86 E-value=61 Score=29.79 Aligned_cols=47 Identities=28% Similarity=0.329 Sum_probs=33.5
Q ss_pred HHHHHHHHHHhcCCCCCCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 027547 39 QMKNLYSTLKSLLPNQPSKEELSLPDQVDEAINYIKMLETKLKECKKRKESLQG 92 (222)
Q Consensus 39 ~mn~~~~~LrsLlP~~~~~~k~si~~iL~~ai~YIk~Lq~~v~~L~~~~~~l~~ 92 (222)
.+.+....+=.-++-++.. = |+++-+-|.+|+++++.|+++.++++.
T Consensus 271 ~~qe~~e~~L~~LnlPTRs----E---lDe~~krL~ELrR~vr~L~k~l~~l~~ 317 (320)
T TIGR01834 271 QQQEIVEALLKMLNLPTRS----E---LDEAHQRIQQLRREVKSLKKRLGDLEA 317 (320)
T ss_pred HHHHHHHHHHHhCCCCCHH----H---HHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 3444444444445444433 3 999999999999999999999887764
No 151
>smart00338 BRLZ basic region leucin zipper.
Probab=41.87 E-value=37 Score=23.16 Aligned_cols=23 Identities=26% Similarity=0.316 Sum_probs=17.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhc
Q 027547 70 INYIKMLETKLKECKKRKESLQG 92 (222)
Q Consensus 70 i~YIk~Lq~~v~~L~~~~~~l~~ 92 (222)
-.||..|+.+++.|+.+.+.|..
T Consensus 25 k~~~~~Le~~~~~L~~en~~L~~ 47 (65)
T smart00338 25 KAEIEELERKVEQLEAENERLKK 47 (65)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 45888888888888888777654
No 152
>cd04932 ACT_AKiii-LysC-EC_1 ACT domains located C-terminal to the catalytic domain of the lysine-sensitive aspartokinase isoenzyme AKIII. This CD includes the first of two ACT domains located C-terminal to the catalytic domain of the lysine-sensitive aspartokinase isoenzyme AKIII, a monofunctional class enzyme found in bacteria (Escherichia coli (EC) LysC). Aspartokinase is the first enzyme in the aspartate metabolic pathway and catalyzes the conversion of aspartate and ATP to aspartylphosphate and ADP. The E. coli AKIII (LysC) binds two feedback allosteric inhibitor lysine molecules at the dimer interface located between the ACT1 domain of two subunits. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=41.30 E-value=1.2e+02 Score=21.23 Aligned_cols=57 Identities=14% Similarity=0.058 Sum_probs=35.1
Q ss_pred CCCCChHHHHHHHHHhCCceEEEEEEEEeCCEEEEEEEEEeccCccccCHHHHHHHHHHHHhcc
Q 027547 136 VDDQFIFYEVIRILHQDGAEILNAKFSVVGNTIFHVIHAEIRDSMFGFGAAKISERLKGFVSGC 199 (222)
Q Consensus 136 ~~~~~~L~~vl~~Le~lgL~V~~a~~s~~~~~~~~ti~~kv~~~~~~~~~~~l~~aL~~~I~~~ 199 (222)
...++.+.+|+++|.+.|+.|-....+. ..+.+++.. .+. ..-+.++.+|.+-+.++
T Consensus 12 ~~~~g~~~~IF~~La~~~I~VDmI~~s~--~~iSftv~~--~d~---~~~~~~~~~l~~~l~~~ 68 (75)
T cd04932 12 LHAQGFLAKVFGILAKHNISVDLITTSE--ISVALTLDN--TGS---TSDQLLTQALLKELSQI 68 (75)
T ss_pred CCCcCHHHHHHHHHHHcCCcEEEEeecC--CEEEEEEec--ccc---chhHHHHHHHHHHHHhc
Confidence 3568999999999999999998886422 333333332 221 11134555666666653
No 153
>cd04913 ACT_AKii-LysC-BS-like_1 ACT domains of the lysine-sensitive aspartokinase isoenzyme AKII of Bacillus subtilis (BS) strain 168 and related proteins. This CD includes the N-terminal of the two ACT domains of the lysine-sensitive aspartokinase isoenzyme AKII of Bacillus subtilis (BS) strain 168, and the lysine plus threonine-sensitive aspartokinase of Corynebacterium glutamicum, and related sequences. In B. subtilis 168, the regulation of the diaminopimelate (Dap)-lysine biosynthetic pathway involves dual control by Dap and lysine, effected through separate Dap- and lysine-sensitive aspartokinase isoenzymes. The B. subtilis 168 AKII is induced by methionine and repressed and inhibited by lysine. Although Corynebacterium glutamicum is known to contain a single aspartokinase, both the succinylase and dehydrogenase variant pathways of DAP-lysine synthesis operate simultaneously in this organism. In corynebacteria and other various Gram-positive bacteria, the DAP-lysine pathway is fee
Probab=41.22 E-value=1e+02 Score=20.19 Aligned_cols=33 Identities=9% Similarity=0.016 Sum_probs=24.5
Q ss_pred EEEEEcCCCCChHHHHHHHHHhCCceEEEEEEE
Q 027547 130 VILTSGVDDQFIFYEVIRILHQDGAEILNAKFS 162 (222)
Q Consensus 130 V~v~~~~~~~~~L~~vl~~Le~lgL~V~~a~~s 162 (222)
|+|+.-.+.++.+.+++++|.+.|+.|.....+
T Consensus 4 v~v~~~~~~~g~~~~i~~~L~~~~I~i~~i~~~ 36 (75)
T cd04913 4 ITLRGVPDKPGVAAKIFGALAEANINVDMIVQN 36 (75)
T ss_pred EEECCCCCCCcHHHHHHHHHHHcCCeEEEEEeC
Confidence 344333467899999999999999999755443
No 154
>COG2716 GcvR Glycine cleavage system regulatory protein [Amino acid transport and metabolism]
Probab=41.07 E-value=1.2e+02 Score=25.57 Aligned_cols=70 Identities=11% Similarity=0.111 Sum_probs=46.7
Q ss_pred eeEEEEEEcCCCCChHHHHHHHHHhCCceEEEEEEEE--eCCE--EEEEEEEEeccCccccCHHHHHHHHHHHHhc
Q 027547 127 NLEVILTSGVDDQFIFYEVIRILHQDGAEILNAKFSV--VGNT--IFHVIHAEIRDSMFGFGAAKISERLKGFVSG 198 (222)
Q Consensus 127 ~v~V~v~~~~~~~~~L~~vl~~Le~lgL~V~~a~~s~--~~~~--~~~ti~~kv~~~~~~~~~~~l~~aL~~~I~~ 198 (222)
.+.|.|.. .+|||++-++.+.|..+|+.+.+...-+ ..+. -++++.+-+.-+. +...+.|.+++..+-..
T Consensus 92 ~v~v~v~a-~DrpgIv~~~T~lf~~~~inie~L~~~~~~a~~s~~~lfha~it~~lPa-~~~i~~l~~~f~al~~~ 165 (176)
T COG2716 92 PVWVYVDA-NDRPGIVEEFTALFDGHGINIENLVSRTYPAPGSSAPLFHAQITARLPA-NLSISALRDAFEALCDE 165 (176)
T ss_pred eEEEEEEe-cCCccHHHHHHHHHHhcCCchhhceeeeeecCCCCccceehhhhccCCC-cCcHHHHHHHHHHHHHh
Confidence 45566655 4899999999999999999887766543 3333 3333333344344 67788888887766543
No 155
>TIGR02625 YiiL_rotase L-rhamnose 1-epimerase. Members of this protein family are rhamnose mutarotase from Escherichia coli, previously designated YiiL as an uncharacterized protein, and close homologs also associated with rhamnose dissimilation operons in other bacterial genomes. Mutarotase is a term for an epimerase that changes optical activity. This enzyme was shown experimentally to interconvert alpha and beta stereoisomers of the pyranose form of L-rhamnose. The crystal structure of this small (104 amino acid) protein shows a locally asymmetric dimer with active site residues of His, Tyr, and Trp.
Probab=38.87 E-value=1.2e+02 Score=23.10 Aligned_cols=75 Identities=16% Similarity=0.229 Sum_probs=43.4
Q ss_pred CChHHHHHHHHHhCCceEEEEEEEEeCCEEEEEEEEEeccCccccCHHHHHHHHHHHHhccc------ccccccCCCCCC
Q 027547 139 QFIFYEVIRILHQDGAEILNAKFSVVGNTIFHVIHAEIRDSMFGFGAAKISERLKGFVSGCA------SEGEMQLPELWD 212 (222)
Q Consensus 139 ~~~L~~vl~~Le~lgL~V~~a~~s~~~~~~~~ti~~kv~~~~~~~~~~~l~~aL~~~I~~~~------~~~~~~~~~~~~ 212 (222)
..+-..|++.|.+.|+.-.+.-..-.++++|..+.+.-...........+.++=.+....+. +.+-++|+++|.
T Consensus 21 ~~vWPEv~~~L~~~Gi~~ysIfl~~~~~~LF~~~E~~d~~~~~~~a~~~~~~~W~~~M~~~~~~~~d~~~~~~~l~~vF~ 100 (102)
T TIGR02625 21 NEIWPELKEVLKSHGAHNYSIFLDKQRNLLFAYVEIEDEERWNAIAETDICQKWWKYMADVMPSNPDNSPVSTDLQEVFY 100 (102)
T ss_pred HccCHHHHHHHHHCCCeEEEEEEECCCCeEEEEEEECchhcHHHhhCCHHHHHHHHHHHHHhccCCCCCcccccCeeeee
Confidence 35566899999999977665544444778887766642111111222234444444444332 456778888876
Q ss_pred c
Q 027547 213 F 213 (222)
Q Consensus 213 ~ 213 (222)
.
T Consensus 101 L 101 (102)
T TIGR02625 101 L 101 (102)
T ss_pred c
Confidence 4
No 156
>PF00170 bZIP_1: bZIP transcription factor cAMP response element binding (CREB) protein signature fos transforming protein signature jun transcription factor signature; InterPro: IPR011616 The basic-leucine zipper (bZIP) transcription factors [, ] of eukaryotic are proteins that contain a basic region mediating sequence-specific DNA-binding followed by a leucine zipper region (see IPR002158 from INTERPRO) required for dimerization.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0043565 sequence-specific DNA binding, 0046983 protein dimerization activity, 0006355 regulation of transcription, DNA-dependent; PDB: 2H7H_B 2OQQ_B 1S9K_E 1JNM_A 1JUN_A 1FOS_H 1A02_J 1T2K_C 1CI6_A 1DH3_C ....
Probab=38.57 E-value=48 Score=22.54 Aligned_cols=23 Identities=35% Similarity=0.524 Sum_probs=16.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhc
Q 027547 70 INYIKMLETKLKECKKRKESLQG 92 (222)
Q Consensus 70 i~YIk~Lq~~v~~L~~~~~~l~~ 92 (222)
..||..|+.++..|+.+.+.|..
T Consensus 25 k~~~~~Le~~~~~L~~en~~L~~ 47 (64)
T PF00170_consen 25 KQYIEELEEKVEELESENEELKK 47 (64)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HhhHHHHHHHHHHHHHHHHHHHH
Confidence 46788888888888877766543
No 157
>PF09789 DUF2353: Uncharacterized coiled-coil protein (DUF2353); InterPro: IPR019179 Members of this family have been annotated as being coiled-coil domain-containing protein 149, however they currently have no known function.
Probab=38.37 E-value=1.3e+02 Score=27.72 Aligned_cols=35 Identities=23% Similarity=0.336 Sum_probs=30.8
Q ss_pred CCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 027547 58 EELSLPDQVDEAINYIKMLETKLKECKKRKESLQG 92 (222)
Q Consensus 58 ~k~si~~iL~~ai~YIk~Lq~~v~~L~~~~~~l~~ 92 (222)
.+.+++.+|.++-+-.+.|+..+++|.++..++..
T Consensus 66 ~~~~La~lL~~sre~Nk~L~~Ev~~Lrqkl~E~qG 100 (319)
T PF09789_consen 66 ENKNLAQLLSESREQNKKLKEEVEELRQKLNEAQG 100 (319)
T ss_pred chhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 56788999999999999999999999998776654
No 158
>PLN02317 arogenate dehydratase
Probab=38.20 E-value=1.6e+02 Score=27.69 Aligned_cols=58 Identities=3% Similarity=0.094 Sum_probs=40.4
Q ss_pred CCCCChHHHHHHHHHhCCceEEEEEEEEeCCE---------------EEEEEEEEeccCccccCHHHHHHHHHHHH
Q 027547 136 VDDQFIFYEVIRILHQDGAEILNAKFSVVGNT---------------IFHVIHAEIRDSMFGFGAAKISERLKGFV 196 (222)
Q Consensus 136 ~~~~~~L~~vl~~Le~lgL~V~~a~~s~~~~~---------------~~~ti~~kv~~~~~~~~~~~l~~aL~~~I 196 (222)
.+++|.|.++|.+|...++.+....+-..-.. .-|.|.+.+... .....++++|.++=
T Consensus 291 ~~~pG~L~k~L~~Fa~~~INLtkIESRP~~~~~~~~~~~~~~~~~~~~eY~FyVD~eg~---~~d~~~~~aL~~L~ 363 (382)
T PLN02317 291 EEGPGVLFKALAVFALRDINLTKIESRPQRKRPLRVVDDSNSGTAKYFDYLFYVDFEAS---MADPRAQNALAHLQ 363 (382)
T ss_pred CCCCchHHHHHHHHHHCCCCEEEEEeeecCCCCccccccccccccccccEEEEEEEEcC---cCCHHHHHHHHHHH
Confidence 46899999999999999999999998865333 346666665542 22345566655443
No 159
>TIGR01268 Phe4hydrox_tetr phenylalanine-4-hydroxylase, tetrameric form. The member of this family from Drosophila has been described as having both phenylalanine-4-hydroxylase and tryptophan 5-monoxygenase activity (PubMed:1371286). However, a Drosophila member of the tryptophan 5-monoxygenase clade has subsequently been discovered.
Probab=36.81 E-value=1.7e+02 Score=28.17 Aligned_cols=43 Identities=5% Similarity=0.049 Sum_probs=33.4
Q ss_pred CCCCChHHHHHHHHHhCCceEEEEEEEEeCC-EEEEEEEEEecc
Q 027547 136 VDDQFIFYEVIRILHQDGAEILNAKFSVVGN-TIFHVIHAEIRD 178 (222)
Q Consensus 136 ~~~~~~L~~vl~~Le~lgL~V~~a~~s~~~~-~~~~ti~~kv~~ 178 (222)
++++|.|.++|+.+...|+.+.+..+-.... .--|.|.+.+..
T Consensus 24 ~d~pGaL~~vL~vFa~~gINLthIESRPsk~~~~eY~FFVD~eg 67 (436)
T TIGR01268 24 KEEAGALAETLKLFQAHDVNLTHIESRPSKTHPGEYEFFVEFDE 67 (436)
T ss_pred CCCCcHHHHHHHHHHHCCCCeeEEecccCCCCCccEEEEEEEec
Confidence 5679999999999999999999999886533 334556666543
No 160
>cd04890 ACT_AK-like_1 ACT domains found C-terminal to the catalytic domain of aspartokinase (AK; 4-L-aspartate-4-phosphotransferase). This CD includes the first of two ACT domains found C-terminal to the catalytic domain of aspartokinase (AK; 4-L-aspartate-4-phosphotransferase). AK catalyzes the conversion of aspartate and ATP to aspartylphosphate and ADP, and is the first enzyme in the pathway of the biosynthesis of the aspartate family of amino acids, lysine, threonine, methionine, and isoleucine. This CD, includes the first ACT domain of the Escherichia coli (EC) isoenzyme, AKIII (LysC) and the Arabidopsis isoenzyme, asparate kinase 1, both enzymes monofunctional and involved in lysine synthesis, as well as the the first ACT domain of Bacillus subtilis (BS) isoenzyme, AKIII (YclM), and of the Saccharomyces cerevisiae AK (Hom3). Also included are the first ACT domains of the Methylomicrobium alcaliphilum AK, the first enzyme of the ectoine biosynthetic pathway. Members of this CD bel
Probab=36.02 E-value=1.1e+02 Score=19.90 Aligned_cols=25 Identities=12% Similarity=0.159 Sum_probs=21.9
Q ss_pred CCCChHHHHHHHHHhCCceEEEEEE
Q 027547 137 DDQFIFYEVIRILHQDGAEILNAKF 161 (222)
Q Consensus 137 ~~~~~L~~vl~~Le~lgL~V~~a~~ 161 (222)
..++...+|+++|++.++.|.....
T Consensus 12 ~~~~~~~~if~~l~~~~i~v~~i~t 36 (62)
T cd04890 12 GEVGFLRKIFEILEKHGISVDLIPT 36 (62)
T ss_pred cccCHHHHHHHHHHHcCCeEEEEec
Confidence 4578999999999999999998854
No 161
>PF14992 TMCO5: TMCO5 family
Probab=34.09 E-value=62 Score=29.19 Aligned_cols=33 Identities=27% Similarity=0.371 Sum_probs=26.9
Q ss_pred CCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 027547 58 EELSLPDQVDEAINYIKMLETKLKECKKRKESL 90 (222)
Q Consensus 58 ~k~si~~iL~~ai~YIk~Lq~~v~~L~~~~~~l 90 (222)
+-.++..+..+++.||++||+.++.++.+++-+
T Consensus 138 d~~~v~~l~eDq~~~i~klkE~L~rmE~ekE~~ 170 (280)
T PF14992_consen 138 DYQQVHQLCEDQANEIKKLKEKLRRMEEEKEML 170 (280)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344566778999999999999999999877643
No 162
>PF08826 DMPK_coil: DMPK coiled coil domain like; InterPro: IPR014930 This domain is found in the myotonic dystrophy protein kinase (DMPK) and adopts a coiled coil structure. It plays a role in dimerisation []. ; GO: 0004674 protein serine/threonine kinase activity, 0005524 ATP binding, 0006468 protein phosphorylation; PDB: 1WT6_D.
Probab=33.90 E-value=96 Score=21.51 Aligned_cols=52 Identities=23% Similarity=0.312 Sum_probs=35.1
Q ss_pred HHHHHHHHHHHHHHHHHhcCCCCCCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 027547 32 IEKNRRDQMKNLYSTLKSLLPNQPSKEELSLPDQVDEAINYIKMLETKLKECKKRKESLQ 91 (222)
Q Consensus 32 ~ER~RR~~mn~~~~~LrsLlP~~~~~~k~si~~iL~~ai~YIk~Lq~~v~~L~~~~~~l~ 91 (222)
+|=+.++.+.+-+...++-- .....-|.+|=...+.|+++|+.|+.+++++.
T Consensus 8 ~EirakQ~~~eEL~kvk~~n--------~~~e~kLqeaE~rn~eL~~ei~~L~~e~ee~r 59 (61)
T PF08826_consen 8 AEIRAKQAIQEELTKVKSAN--------LAFESKLQEAEKRNRELEQEIERLKKEMEELR 59 (61)
T ss_dssp HHHHHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 44455555555555544311 11233499999999999999999999988764
No 163
>PRK00227 glnD PII uridylyl-transferase; Provisional
Probab=33.74 E-value=79 Score=32.05 Aligned_cols=53 Identities=17% Similarity=0.243 Sum_probs=44.4
Q ss_pred CCCCChHHHHHHHHHhCCceEEEEEEEEeCCEEEEEEEEEeccCccccCHHHHHHHHHHHHh
Q 027547 136 VDDQFIFYEVIRILHQDGAEILNAKFSVVGNTIFHVIHAEIRDSMFGFGAAKISERLKGFVS 197 (222)
Q Consensus 136 ~~~~~~L~~vl~~Le~lgL~V~~a~~s~~~~~~~~ti~~kv~~~~~~~~~~~l~~aL~~~I~ 197 (222)
.+++|+|..|+.+|. +|.-|.+++.|..++.++... . +.+-..+.+++..++.
T Consensus 639 ~dr~g~l~~~~~~l~----~~~~~~~~~~g~~~~~~~~~~--~---~~~r~~~~~~~~~~~~ 691 (693)
T PRK00227 639 EDRRGALGALLGVLP----DLLWITASTPGATMIVQAALK--P---GFDRATVERDVTRVLA 691 (693)
T ss_pred CccccHHHHHHHHhh----hhhhHhhcCCCcceEEEEEec--C---cccHHHHHHHHHHHHh
Confidence 478999999999999 999999999999988888776 2 3467788888877764
No 164
>TIGR02079 THD1 threonine dehydratase. This model represents threonine dehydratase, the first step in the pathway converting threonine into isoleucine. At least two other clades of biosynthetic threonine dehydratases have been characterized by models TIGR01124 and TIGR01127. Those sequences described by this model are exclusively found in species containg the rest of the isoleucine pathway and which are generally lacking in members of the those other two clades of threonine dehydratases. Members of this clade are also often gene clustered with other elements of the isoleucine pathway.
Probab=33.46 E-value=2.2e+02 Score=26.69 Aligned_cols=56 Identities=16% Similarity=0.114 Sum_probs=36.4
Q ss_pred CCCCChHHHHHHHHHhCCceEEEEEEEEe-C-CEEEEEEEEEeccCccccCHHHHHHHHHH
Q 027547 136 VDDQFIFYEVIRILHQDGAEILNAKFSVV-G-NTIFHVIHAEIRDSMFGFGAAKISERLKG 194 (222)
Q Consensus 136 ~~~~~~L~~vl~~Le~lgL~V~~a~~s~~-~-~~~~~ti~~kv~~~~~~~~~~~l~~aL~~ 194 (222)
+++||.|.++++.+-..+.+|...+.-.. + +.....+.+++.+. ...++|.++|.+
T Consensus 333 pdrPGaL~~~l~~i~~~~~NI~~~~y~~~~~~~~~~v~v~iE~~~~---~h~~~i~~~L~~ 390 (409)
T TIGR02079 333 PQRPGALREFLNDVLGPNDDITRFEYTKKSNRETGPALIGIELNDK---EDFAGLLERMAA 390 (409)
T ss_pred CCCCCHHHHHHHHHhcCCCcEEEEEeeecCCCCeEEEEEEEEeCCH---HHHHHHHHHHHH
Confidence 58999999999977777779998777632 2 23444455555541 234556666654
No 165
>PRK14639 hypothetical protein; Provisional
Probab=32.46 E-value=1.8e+02 Score=23.17 Aligned_cols=53 Identities=8% Similarity=0.037 Sum_probs=37.6
Q ss_pred HHHHHHhCCceEEEEEEEEeCCEEEEEEEEEeccCccccCHHHHHHHHHHHHh
Q 027547 145 VIRILHQDGAEILNAKFSVVGNTIFHVIHAEIRDSMFGFGAAKISERLKGFVS 197 (222)
Q Consensus 145 vl~~Le~lgL~V~~a~~s~~~~~~~~ti~~kv~~~~~~~~~~~l~~aL~~~I~ 197 (222)
+-.+++++|+++..+.+...++..+..|...-.++-.--+++.+.++|..++.
T Consensus 3 ~ep~~~~~G~eLvdve~~~~~~~~~lrV~Id~~~gv~iddC~~vSr~is~~LD 55 (140)
T PRK14639 3 LEALCKECGVSFYDDELVSENGRKIYRVYITKEGGVNLDDCERLSELLSPIFD 55 (140)
T ss_pred hhHhHHhCCCEEEEEEEEecCCCcEEEEEEeCCCCCCHHHHHHHHHHHHHHhc
Confidence 44678899999999999988876665555542222222367788888888777
No 166
>PF10393 Matrilin_ccoil: Trimeric coiled-coil oligomerisation domain of matrilin; InterPro: IPR019466 This entry represents a short domain found the matrilin (cartilage matrix) proteins. It forms a coiled coil structure and contains a single cysteine residue at its start which is likely to form a di-sulphide bridge with a corresponding cysteine in an upstream EGF domain (IPR006209 from INTERPRO), thereby spanning the VWA domain of the protein (IPR002035 from INTERPRO).This domain is likely to be responsible for protein trimerisation []. ; PDB: 1AQ5_C.
Probab=32.16 E-value=1.1e+02 Score=20.16 Aligned_cols=31 Identities=26% Similarity=0.331 Sum_probs=24.4
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 027547 62 LPDQVDEAINYIKMLETKLKECKKRKESLQG 92 (222)
Q Consensus 62 i~~iL~~ai~YIk~Lq~~v~~L~~~~~~l~~ 92 (222)
+..--+.+-.+|+.|.+++..+.++.+.|+.
T Consensus 14 lv~FQ~~v~~~lq~Lt~kL~~vs~RLe~LEn 44 (47)
T PF10393_consen 14 LVAFQNKVTSALQSLTQKLDAVSKRLEALEN 44 (47)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3344577888999999999999998887753
No 167
>TIGR01270 Trp_5_monoox tryptophan 5-monooxygenase, tetrameric. This model describes tryptophan 5-monooxygenase, a member of the family of tetrameric, biopterin-dependent aromatic amino acid hydroxylases found in metazoans. It is closely related to tetrameric phenylalanine-4-hydroxylase and tyrosine 3-monooxygenase, and more distantly related to the monomeric phenylalanine-4-hydroxylase found in some Gram-negative bacteria.
Probab=31.80 E-value=1.8e+02 Score=28.17 Aligned_cols=65 Identities=9% Similarity=-0.007 Sum_probs=42.8
Q ss_pred CCCCChHHHHHHHHHhCCceEEEEEEEEeCCE-EE-EEEEEEeccCccccCHHHHHHHHHHHHhccccccccc
Q 027547 136 VDDQFIFYEVIRILHQDGAEILNAKFSVVGNT-IF-HVIHAEIRDSMFGFGAAKISERLKGFVSGCASEGEMQ 206 (222)
Q Consensus 136 ~~~~~~L~~vl~~Le~lgL~V~~a~~s~~~~~-~~-~ti~~kv~~~~~~~~~~~l~~aL~~~I~~~~~~~~~~ 206 (222)
.+++|.|.++|+.++..|+.+.+..+-..... .- |.|.+.+.. . ...+.++|..+- ..+..+.+.
T Consensus 39 ~d~pGaL~~vL~vFa~~gINLThIESRPsk~~~~e~Y~FfVD~Eg-~----~~~l~~aL~~Lk-~~~~~~~~~ 105 (464)
T TIGR01270 39 SNVVGDLSKAIAIFQDRHINILHLESRDSKDGTSKTMDVLVDVEL-F----HYGLQEAMDLLK-SGLDVHEVS 105 (464)
T ss_pred CCCchHHHHHHHHHHHCCCCEEEEECCcCCCCCCccEEEEEEEEc-C----HHHHHHHHHHHH-Hhcccceec
Confidence 46799999999999999999999998866433 23 555565542 1 235666554443 333343343
No 168
>cd04871 ACT_PSP_2 ACT domains found N-terminal of phosphoserine phosphatase (PSP, SerB). The ACT_PSP_2 CD includes the second of the two ACT domains found N-terminal of phosphoserine phosphatase (PSP, SerB). PSPs belong to the L-2-haloacid dehalogenase-like protein superfamily. PSP is involved in serine metabolism; serine is synthesized from phosphoglycerate through sequential reactions catalyzed by 3-phosphoglycerate dehydrogenase (SerA), 3-phosphoserine aminotransferase (SerC), and SerB. Members of this CD belong to the superfamily of ACT regulatory domains
Probab=30.49 E-value=52 Score=23.73 Aligned_cols=60 Identities=13% Similarity=0.103 Sum_probs=43.3
Q ss_pred cCC-CCChHHHHHHHHHhCCceEEEEEEEEeCCE---------EEEEEEEEeccCccccCHHHHHHHHHHHHhc
Q 027547 135 GVD-DQFIFYEVIRILHQDGAEILNAKFSVVGNT---------IFHVIHAEIRDSMFGFGAAKISERLKGFVSG 198 (222)
Q Consensus 135 ~~~-~~~~L~~vl~~Le~lgL~V~~a~~s~~~~~---------~~~ti~~kv~~~~~~~~~~~l~~aL~~~I~~ 198 (222)
+++ ..+.+..|-+.|-++|++|.+.+-- .++ -.+.+...+.... .+.+.++.+|.++-..
T Consensus 6 g~~~~a~~ia~Vs~~lA~~~~NI~~I~~l--~~~~~~~~~~~~~~~~~e~~v~~~~--~~~~~lr~~L~~la~e 75 (84)
T cd04871 6 GRPLTAEQLAAVTRVVADQGLNIDRIRRL--SGRVPLEEQDDSPKACVEFSVRGQP--ADLEALRAALLELASE 75 (84)
T ss_pred cCcCCHHHHHHHHHHHHHcCCCHHHHHHh--hccccccccCCCCcEEEEEEEeCCC--CCHHHHHHHHHHHhcc
Confidence 345 6799999999999999998877642 111 2556677776544 6888999988866543
No 169
>cd04921 ACT_AKi-HSDH-ThrA-like_1 ACT domains of the bifunctional enzyme aspartokinase (AK) - homoserine dehydrogenase (HSDH). This CD includes the first of two ACT domains of the bifunctional enzyme aspartokinase (AK) - homoserine dehydrogenase (HSDH). The ACT domains are positioned between the N-terminal catalytic domain of AK and the C-terminal HSDH domain found in bacteria (Escherichia coli (EC) ThrA) and higher plants (Zea mays AK-HSDH). AK and HSDH are the first and third enzymes in the biosynthetic pathway of the aspartate family of amino acids. AK catalyzes the phosphorylation of Asp to P-aspartyl phosphate. HSDH catalyzes the NADPH-dependent conversion of Asp 3-semialdehyde to homoserine. HSDH is the first committed reaction in the branch of the pathway that leads to Thr and Met. In E. coli, ThrA is subject to allosteric regulation by the end product L-threonine and the native enzyme is reported to be tetrameric. As with bacteria, plant AK and HSDH are feedback inhibited by pat
Probab=29.78 E-value=1.8e+02 Score=19.75 Aligned_cols=26 Identities=12% Similarity=0.087 Sum_probs=22.4
Q ss_pred CCCChHHHHHHHHHhCCceEEEEEEE
Q 027547 137 DDQFIFYEVIRILHQDGAEILNAKFS 162 (222)
Q Consensus 137 ~~~~~L~~vl~~Le~lgL~V~~a~~s 162 (222)
..++.+.+++++|.+.++.+...+.+
T Consensus 13 ~~~~~~~~i~~~L~~~~I~v~~i~~~ 38 (80)
T cd04921 13 GVPGIAARIFSALARAGINVILISQA 38 (80)
T ss_pred CCccHHHHHHHHHHHCCCcEEEEEec
Confidence 45789999999999999999877665
No 170
>PF04508 Pox_A_type_inc: Viral A-type inclusion protein repeat ; InterPro: IPR007596 The repeat is found in the A-type inclusion protein of the Poxvirus family [].; GO: 0016032 viral reproduction
Probab=29.67 E-value=84 Score=17.67 Aligned_cols=17 Identities=6% Similarity=0.335 Sum_probs=13.3
Q ss_pred HHHHHHHHHHHHHHHHH
Q 027547 73 IKMLETKLKECKKRKES 89 (222)
Q Consensus 73 Ik~Lq~~v~~L~~~~~~ 89 (222)
|..|+.+|.+|+++.+.
T Consensus 3 ~~rlr~rI~dLer~L~~ 19 (23)
T PF04508_consen 3 MNRLRNRISDLERQLSE 19 (23)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 56788889999887754
No 171
>PRK14630 hypothetical protein; Provisional
Probab=29.67 E-value=2.4e+02 Score=22.63 Aligned_cols=64 Identities=16% Similarity=0.027 Sum_probs=39.2
Q ss_pred HHHHHHhCCceEEEEEEEEeCCEEEEEEEEEeccCccccCHHHHHHHHHHHHhcccccccccCCCCCCccc
Q 027547 145 VIRILHQDGAEILNAKFSVVGNTIFHVIHAEIRDSMFGFGAAKISERLKGFVSGCASEGEMQLPELWDFEI 215 (222)
Q Consensus 145 vl~~Le~lgL~V~~a~~s~~~~~~~~ti~~kv~~~~~~~~~~~l~~aL~~~I~~~~~~~~~~~~~~~~~~~ 215 (222)
+-..++++|+++..+.+...++..+..|...-.++-.--+|+.+.++|...+.. ++|+-+-+|+
T Consensus 14 i~~~~~~~G~eLvdve~~~~~~~~~lrV~Id~~~gV~idDC~~vSr~i~~~ld~-------~i~~~Y~LEV 77 (143)
T PRK14630 14 IKNVTDRLGIEIIEINTFRNRNEGKIQIVLYKKDSFGVDTLCDLHKMILLILEA-------VLKYNFSLEI 77 (143)
T ss_pred HHHHHHHcCCEEEEEEEEecCCCcEEEEEEECCCCCCHHHHHHHHHHHHHHhcc-------cCCCCeEEEE
Confidence 344578899999999998776654444444322222123577788888666642 4455554443
No 172
>PRK14647 hypothetical protein; Provisional
Probab=29.44 E-value=2.9e+02 Score=22.40 Aligned_cols=52 Identities=13% Similarity=0.214 Sum_probs=35.1
Q ss_pred HHHHHhCCceEEEEEEEEeCCEEEEEEEEEeccCccccCHHHHHHHHHHHHh
Q 027547 146 IRILHQDGAEILNAKFSVVGNTIFHVIHAEIRDSMFGFGAAKISERLKGFVS 197 (222)
Q Consensus 146 l~~Le~lgL~V~~a~~s~~~~~~~~ti~~kv~~~~~~~~~~~l~~aL~~~I~ 197 (222)
-.+++++|+++..+.+...+...+..|...-.++-.--+++.+.++|..++.
T Consensus 15 ~~~~~~~G~~L~dv~~~~~~~~~~lrV~ID~~~gvslddC~~vSr~is~~LD 66 (159)
T PRK14647 15 EQVLSSLGLELVELEYKREGREMVLRLFIDKEGGVNLDDCAEVSRELSEILD 66 (159)
T ss_pred HHHHHHCCCEEEEEEEEecCCCeEEEEEEeCCCCCCHHHHHHHHHHHHHHHc
Confidence 4457889999999999988775554444432222222357788888888886
No 173
>PF07544 Med9: RNA polymerase II transcription mediator complex subunit 9; InterPro: IPR011425 The Mediator complex is a coactivator involved in the regulated transcription of nearly all RNA polymerase II-dependent genes. Mediator functions as a bridge to convey information from gene-specific regulatory proteins to the basal RNA polymerase II transcription machinery. The Mediator complex, having a compact conformation in its free form, is recruited to promoters by direct interactions with regulatory proteins and serves for the assembly of a functional preinitiation complex with RNA polymerase II and the general transcription factors. On recruitment the Mediator complex unfolds to an extended conformation and partially surrounds RNA polymerase II, specifically interacting with the unphosphorylated form of the C-terminal domain (CTD) of RNA polymerase II. The Mediator complex dissociates from the RNA polymerase II holoenzyme and stays at the promoter when transcriptional elongation begins. The Mediator complex is composed of at least 31 subunits: MED1, MED4, MED6, MED7, MED8, MED9, MED10, MED11, MED12, MED13, MED13L, MED14, MED15, MED16, MED17, MED18, MED19, MED20, MED21, MED22, MED23, MED24, MED25, MED26, MED27, MED29, MED30, MED31, CCNC, CDK8 and CDC2L6/CDK11. The subunits form at least three structurally distinct submodules. The head and the middle modules interact directly with RNA polymerase II, whereas the elongated tail module interacts with gene-specific regulatory proteins. Mediator containing the CDK8 module is less active than Mediator lacking this module in supporting transcriptional activation. The head module contains: MED6, MED8, MED11, SRB4/MED17, SRB5/MED18, ROX3/MED19, SRB2/MED20 and SRB6/MED22. The middle module contains: MED1, MED4, NUT1/MED5, MED7, CSE2/MED9, NUT2/MED10, SRB7/MED21 and SOH1/MED31. CSE2/MED9 interacts directly with MED4. The tail module contains: MED2, PGD1/MED3, RGR1/MED14, GAL11/MED15 and SIN4/MED16. The CDK8 module contains: MED12, MED13, CCNC and CDK8. Individual preparations of the Mediator complex lacking one or more distinct subunits have been variously termed ARC, CRSP, DRIP, PC2, SMCC and TRAP. This entry represents subunit Med9 of the Mediator complex. Subunit Med9 is part of the middle module of the Mediator complex []; this associates with the core polymerase subunits to form the RNA polymerase II holoenzyme. Med9 alternatively known as the chromosome segregation protein, CSE2 (P33308 from SWISSPROT) is required, along with CSE1 (P33307 from SWISSPROT) for accurate mitotic chromosome segregation in Saccharomyces cerevisiae (Baker's yeast) [].; GO: 0001104 RNA polymerase II transcription cofactor activity, 0006357 regulation of transcription from RNA polymerase II promoter, 0016592 mediator complex
Probab=28.57 E-value=2.3e+02 Score=20.46 Aligned_cols=48 Identities=17% Similarity=0.308 Sum_probs=33.4
Q ss_pred HHHHHHHHHHHhcCCCCCCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 027547 38 DQMKNLYSTLKSLLPNQPSKEELSLPDQVDEAINYIKMLETKLKECKKRKESL 90 (222)
Q Consensus 38 ~~mn~~~~~LrsLlP~~~~~~k~si~~iL~~ai~YIk~Lq~~v~~L~~~~~~l 90 (222)
..++.+|...|++|-..+..++ | +.+=-.+|+.|+++++....-...+
T Consensus 31 ~~lk~Klq~ar~~i~~lpgi~~-s----~eeq~~~i~~Le~~i~~k~~~L~~~ 78 (83)
T PF07544_consen 31 GSLKHKLQKARAAIRELPGIDR-S----VEEQEEEIEELEEQIRKKREVLQKF 78 (83)
T ss_pred HHHHHHHHHHHHHHHhCCCccC-C----HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4567777777777765555443 3 6777788888888888777655544
No 174
>cd04936 ACT_AKii-LysC-BS-like_2 ACT domains of the lysine-sensitive, aspartokinase (AK) isoenzyme AKII of Bacillus subtilis (BS) strain 168 and related domains. This CD includes the C-terminal of the two ACT domains of the lysine-sensitive, aspartokinase (AK) isoenzyme AKII of Bacillus subtilis (BS) strain 168, and the lysine plus threonine-sensitive aspartokinase of Corynebacterium glutamicum, and related sequences. In B. subtilis strain 168, the regulation of the diaminopimelate (Dap)-lysine biosynthetic pathway involves dual control by Dap and lysine, effected through separate Dap- and lysine-sensitive AK isoenzymes. The B. subtilis strain 168 AKII is induced by methionine and repressed and inhibited by lysine. Although C. glutamicum is known to contain a single AK, both the succinylase and dehydrogenase variant pathways of DAP-lysine synthesis operate simultaneously in this organism. In corynebacteria and other various Gram-positive bacteria, the DAP-lysine pathway is feedback regu
Probab=28.39 E-value=1.6e+02 Score=18.62 Aligned_cols=26 Identities=15% Similarity=0.093 Sum_probs=22.2
Q ss_pred CCCChHHHHHHHHHhCCceEEEEEEE
Q 027547 137 DDQFIFYEVIRILHQDGAEILNAKFS 162 (222)
Q Consensus 137 ~~~~~L~~vl~~Le~lgL~V~~a~~s 162 (222)
+.++.+.+++++|.+.++.|...+.+
T Consensus 12 ~~~~~~~~i~~~L~~~~i~v~~i~~s 37 (63)
T cd04936 12 SHPGVAAKMFEALAEAGINIEMISTS 37 (63)
T ss_pred CCccHHHHHHHHHHHCCCcEEEEEcc
Confidence 45789999999999999999887743
No 175
>PF12289 Rotavirus_VP1: Rotavirus VP1 structural protein; InterPro: IPR022071 This domain family is found in viruses, and is approximately 50 amino acids in length. The family is found in association with PF02123 from PFAM. VP1 is a structural protein of the inner core layer of the rotavirus virion. It complexes with VP2 and Vp3 to form this layer. ; GO: 0003968 RNA-directed RNA polymerase activity; PDB: 2R7X_B 2R7S_A 2R7Q_A 2R7U_A 2R7R_A 2R7T_A 2R7V_A 2R7W_A 2R7O_A.
Probab=28.20 E-value=66 Score=21.24 Aligned_cols=32 Identities=22% Similarity=0.327 Sum_probs=16.2
Q ss_pred HHHHHHHHHHHHHHHHHHhcCCCCCCCCC-CChhHH
Q 027547 31 TIEKNRRDQMKNLYSTLKSLLPNQPSKEE-LSLPDQ 65 (222)
Q Consensus 31 ~~ER~RR~~mn~~~~~LrsLlP~~~~~~k-~si~~i 65 (222)
..| +||.++..++..|... ...+..+ .+|-++
T Consensus 19 ale-krr~q~s~l~t~lq~p--~~fks~~~vtind~ 51 (52)
T PF12289_consen 19 ALE-KRRAQLSILLTFLQKP--TTFKSSTVVTINDI 51 (52)
T ss_dssp HHH-HHHHHHHHHHHHHHS-----------EEHHHH
T ss_pred hHH-HHHHHHHHHHHHHhCC--ceecccceeeeccc
Confidence 344 5688889888888873 3444444 444333
No 176
>PF14197 Cep57_CLD_2: Centrosome localisation domain of PPC89
Probab=27.31 E-value=1.4e+02 Score=20.99 Aligned_cols=30 Identities=23% Similarity=0.213 Sum_probs=25.1
Q ss_pred ChhHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 027547 61 SLPDQVDEAINYIKMLETKLKECKKRKESL 90 (222)
Q Consensus 61 si~~iL~~ai~YIk~Lq~~v~~L~~~~~~l 90 (222)
+....|++|+.-+.+|+.+++.|+++.+..
T Consensus 37 ~~~~~l~~a~~e~~~Lk~E~e~L~~el~~~ 66 (69)
T PF14197_consen 37 SAERQLGDAYEENNKLKEENEALRKELEEL 66 (69)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 445569999999999999999999986643
No 177
>cd02018 TPP_PFOR Thiamine pyrophosphate (TPP family), Pyruvate ferredoxin/flavodoxin oxidoreductase (PFOR) subfamily, TPP-binding module; PFOR catalyzes the oxidative decarboxylation of pyruvate to form acetyl-CoA, a crucial step in many metabolic pathways. Archaea, anaerobic bacteria and eukaryotes that lack mitochondria (and therefore pyruvate dehydrogenase) use PFOR to oxidatively decarboxylate pyruvate, with ferredoxin or flavodoxin as the electron acceptor. PFORs can be homodimeric, heterodimeric, or heterotetrameric, depending on the organism. These enzymes are dependent on TPP and a divalent metal cation as cofactors.
Probab=27.27 E-value=48 Score=28.67 Aligned_cols=26 Identities=12% Similarity=-0.102 Sum_probs=17.4
Q ss_pred cCHHHHHHHHHHHHh-cc-cccccccCC
Q 027547 183 FGAAKISERLKGFVS-GC-ASEGEMQLP 208 (222)
Q Consensus 183 ~~~~~l~~aL~~~I~-~~-~~~~~~~~~ 208 (222)
.+.+++..+|.+++. .- .+.+++.+|
T Consensus 176 ~~~~~l~~al~~al~~~~GP~lI~v~i~ 203 (237)
T cd02018 176 ALKKHFLKVVKEAISRTDGPTFIHAYTP 203 (237)
T ss_pred CCHHHHHHHHHHHHhcCCCCEEEEEeCC
Confidence 357889999999986 32 445555433
No 178
>PRK07431 aspartate kinase; Provisional
Probab=27.17 E-value=4.5e+02 Score=25.67 Aligned_cols=65 Identities=14% Similarity=0.003 Sum_probs=40.0
Q ss_pred CCCChHHHHHHHHHhCCceEEEEEEEEeCCEEEEEEEEEeccCccccCHHHHHHHHHHHHhcccccccccCCCCCC
Q 027547 137 DDQFIFYEVIRILHQDGAEILNAKFSVVGNTIFHVIHAEIRDSMFGFGAAKISERLKGFVSGCASEGEMQLPELWD 212 (222)
Q Consensus 137 ~~~~~L~~vl~~Le~lgL~V~~a~~s~~~~~~~~ti~~kv~~~~~~~~~~~l~~aL~~~I~~~~~~~~~~~~~~~~ 212 (222)
..++.+.+++.+|.+.++.|...+. .+.. |.+-+.. .+.+...++|++.+..-...+|+. |-.|.
T Consensus 360 ~~~gi~~ki~~aL~~~~I~i~~i~s--Se~~----Is~vv~~----~d~~~av~~Lh~~f~~~~~~~~~~-~~~~~ 424 (587)
T PRK07431 360 GRPGIAAKMFDTLAEAGINIRMIST--SEVK----VSCVIDA----EDGDKALRAVCEAFELEDSQIEIN-PTASG 424 (587)
T ss_pred cCccHHHHHHHHHHHCCCcEEEEEc--CCCE----EEEEEcH----HHHHHHHHHHHHHhccCCcccccC-ccccC
Confidence 5689999999999999999987772 2222 2222221 246666667766664433444444 44443
No 179
>PF09849 DUF2076: Uncharacterized protein conserved in bacteria (DUF2076); InterPro: IPR018648 This family of hypothetical prokaryotic proteins has no known function but includes putative perimplasmic ligand-binding sensor proteins.
Probab=26.71 E-value=2.4e+02 Score=24.86 Aligned_cols=53 Identities=17% Similarity=0.350 Sum_probs=32.5
Q ss_pred HHHHHHHHHHHHhcCCCCCCCC------------CCChhHHHHHHH----HHHHHHHHHHHHHHHHHHHh
Q 027547 37 RDQMKNLYSTLKSLLPNQPSKE------------ELSLPDQVDEAI----NYIKMLETKLKECKKRKESL 90 (222)
Q Consensus 37 R~~mn~~~~~LrsLlP~~~~~~------------k~si~~iL~~ai----~YIk~Lq~~v~~L~~~~~~l 90 (222)
|+-|..+|..|+..=.. .+.. .-.-++.|..+| .=||.++.+|++|+.+..+.
T Consensus 6 ~qLI~~lf~RL~~ae~~-prD~eAe~lI~~~~~~qP~A~Y~laQ~vlvQE~AL~~a~~ri~eLe~ql~q~ 74 (247)
T PF09849_consen 6 RQLIDDLFSRLKQAEAQ-PRDPEAEALIAQALARQPDAPYYLAQTVLVQEQALKQAQARIQELEAQLQQA 74 (247)
T ss_pred HHHHHHHHHHHHhccCC-CCCHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 67899999999987655 2210 001112222222 12788999999999987553
No 180
>PRK14637 hypothetical protein; Provisional
Probab=26.64 E-value=3.5e+02 Score=21.93 Aligned_cols=59 Identities=10% Similarity=-0.094 Sum_probs=39.5
Q ss_pred CChHHHHHHHHHhCCceEEEEEEEEeCCEEEEEEEEEeccCccccCHHHHHHHHHHHHh
Q 027547 139 QFIFYEVIRILHQDGAEILNAKFSVVGNTIFHVIHAEIRDSMFGFGAAKISERLKGFVS 197 (222)
Q Consensus 139 ~~~L~~vl~~Le~lgL~V~~a~~s~~~~~~~~ti~~kv~~~~~~~~~~~l~~aL~~~I~ 197 (222)
-|-...+-.+++++|+++..+.+...++.-+..|...-.++-.--+++.+.++|-.++.
T Consensus 8 ~~~~~~v~p~~~~~g~eLvdve~~~~~~~~~lrV~ID~~~gV~iddC~~vSr~Is~~LD 66 (151)
T PRK14637 8 LGYFSECEPVVEGLGCKLVDLSRRVQQAQGRVRAVIYSAGGVGLDDCARVHRILVPRLE 66 (151)
T ss_pred ccHHHHHHHHHHhcCCEEEEEEEEecCCCcEEEEEEECCCCCCHHHHHHHHHHHHHHhc
Confidence 35566677789999999999999988775444444432222212356777777777765
No 181
>PF01545 Cation_efflux: Cation efflux family; InterPro: IPR002524 Members of this family are integral membrane proteins, that are found to increase tolerance to divalent metal ions such as cadmium, zinc, and cobalt. These proteins are considered to be efflux pumps that remove these ions from cells [, ], however others are implicated in ion uptake []. The family has six predicted transmembrane domains. Members of the family are variable in length because of variably sized inserts, often containing low-complexity sequence.; GO: 0008324 cation transmembrane transporter activity, 0006812 cation transport, 0055085 transmembrane transport, 0016021 integral to membrane; PDB: 3BYP_B 3BYR_A 3H90_B 2QFI_B 2ZZT_A.
Probab=26.44 E-value=3.5e+02 Score=23.14 Aligned_cols=62 Identities=19% Similarity=0.185 Sum_probs=46.9
Q ss_pred CChHHHHHHHHHh--CCceEEEEEEEEeCC-EEEEEEEEEeccCccccCHHHHHHHHHHHHhccc
Q 027547 139 QFIFYEVIRILHQ--DGAEILNAKFSVVGN-TIFHVIHAEIRDSMFGFGAAKISERLKGFVSGCA 200 (222)
Q Consensus 139 ~~~L~~vl~~Le~--lgL~V~~a~~s~~~~-~~~~ti~~kv~~~~~~~~~~~l~~aL~~~I~~~~ 200 (222)
+....++.+.+++ ...+|.+..+-..+. .....++++++......+.+++.+++++.+.+..
T Consensus 204 ~~~~~~i~~~i~~~~~v~~v~~~~~~~~g~~~~~v~i~v~v~~~~~v~~~~~i~~~i~~~l~~~~ 268 (284)
T PF01545_consen 204 PELVEKIRRIIESVPGVIEVHDLRVWQVGRNKYVVEIHVQVDPDMSVEEAHEIRERIEKRLREKF 268 (284)
T ss_dssp HHHHHHHHHHHHHTSS-SEEEEEEEEEETT-EEEEEEEEEETTTSBHHHHHHHHHHHHHHHHHHS
T ss_pred ccchhHHHHhhccCCceEeccceEEEEecCCcEEEEEEEEeCCCCCHHHHHHHHHHHHHHHHHhC
Confidence 4556778888855 357999999999998 8888899998775534457788888888888654
No 182
>PRK08818 prephenate dehydrogenase; Provisional
Probab=25.85 E-value=4e+02 Score=24.81 Aligned_cols=41 Identities=12% Similarity=0.169 Sum_probs=30.9
Q ss_pred CCCChHHHHHHHHHhCCceEEEEEEEEeCCEEEEEEEEEecc
Q 027547 137 DDQFIFYEVIRILHQDGAEILNAKFSVVGNTIFHVIHAEIRD 178 (222)
Q Consensus 137 ~~~~~L~~vl~~Le~lgL~V~~a~~s~~~~~~~~ti~~kv~~ 178 (222)
++||.|.+|+..|-..|+++.+..+.......+. |...+..
T Consensus 305 d~pG~L~~vl~~la~~~INit~Ies~~~r~~~y~-f~i~~~~ 345 (370)
T PRK08818 305 DRPGSLRTLLHVFEQHGVNLSSIHSSRTPAGELH-FRIGFEP 345 (370)
T ss_pred CCCChHHHHHHHHHHcCcccceEEEecccCceEE-EEEEEec
Confidence 7899999999999999999999999543332222 5555543
No 183
>cd04935 ACT_AKiii-DAPDC_1 ACT domains of a bifunctional AKIII (LysC)-like aspartokinase/meso-diaminopimelate decarboxylase (DAPDC) bacterial protein. This CD includes the first of two ACT domains of a bifunctional AKIII (LysC)-like aspartokinase/meso-diaminopimelate decarboxylase (DAPDC) bacterial protein. Aspartokinase (AK) is the first enzyme in the aspartate metabolic pathway and catalyzes the conversion of aspartate and ATP to aspartylphosphate and ADP. The lysA gene encodes the enzyme DAPDC, a pyridoxal-5'-phosphate (PLP)-dependent enzyme which catalyzes the final step in the lysine biosynthetic pathway converting meso-diaminopimelic acid (DAP) to l-lysine. Tandem ACT domains are positioned centrally with the AK catalytic domain N-terminal and the DAPDC domains C-terminal. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=25.80 E-value=2.2e+02 Score=19.86 Aligned_cols=25 Identities=8% Similarity=0.073 Sum_probs=22.0
Q ss_pred CCCChHHHHHHHHHhCCceEEEEEE
Q 027547 137 DDQFIFYEVIRILHQDGAEILNAKF 161 (222)
Q Consensus 137 ~~~~~L~~vl~~Le~lgL~V~~a~~ 161 (222)
..++.+.+|+++|.+.|+.|-....
T Consensus 13 ~~~g~~~~IF~~La~~~I~vDmI~~ 37 (75)
T cd04935 13 QQVGFLADVFAPFKKHGVSVDLVST 37 (75)
T ss_pred CccCHHHHHHHHHHHcCCcEEEEEe
Confidence 4589999999999999999988864
No 184
>PRK11191 RNase E inhibitor protein; Provisional
Probab=25.74 E-value=2.7e+02 Score=22.38 Aligned_cols=64 Identities=13% Similarity=-0.012 Sum_probs=43.5
Q ss_pred CCCChHHHHHHHHHhCCceEEEEEEE-EeCCEEEEEEEEEeccCccccCHHHHHHHHHHHHhccc
Q 027547 137 DDQFIFYEVIRILHQDGAEILNAKFS-VVGNTIFHVIHAEIRDSMFGFGAAKISERLKGFVSGCA 200 (222)
Q Consensus 137 ~~~~~L~~vl~~Le~lgL~V~~a~~s-~~~~~~~~ti~~kv~~~~~~~~~~~l~~aL~~~I~~~~ 200 (222)
.....+.+++..+.++|.+|..+.-. .-++...|++.+-................|..+..++.
T Consensus 41 ~d~~~lek~a~~a~klGyeV~~~ee~e~edg~~~~~~~~~~e~~l~~e~I~~~~~~L~~LA~k~~ 105 (138)
T PRK11191 41 DDFDKLEKAAVEAFKLGYEVTDAEELELEDGDVIFCCDAVSEVALNAELIDAQVEQLLALAEKFD 105 (138)
T ss_pred CCHHHHHHHHHHHHHcCCeeecccccccCCCCeEEEEEEEecCCCCHHHHHHHHHHHHHHHHHhC
Confidence 35678899999999999999776643 56677777777765554323345555666666666554
No 185
>PRK14640 hypothetical protein; Provisional
Probab=25.61 E-value=3.3e+02 Score=21.95 Aligned_cols=53 Identities=11% Similarity=0.088 Sum_probs=35.4
Q ss_pred HHHHHHhCCceEEEEEEEEeCCEEEEEEEEEeccCccccCHHHHHHHHHHHHh
Q 027547 145 VIRILHQDGAEILNAKFSVVGNTIFHVIHAEIRDSMFGFGAAKISERLKGFVS 197 (222)
Q Consensus 145 vl~~Le~lgL~V~~a~~s~~~~~~~~ti~~kv~~~~~~~~~~~l~~aL~~~I~ 197 (222)
+-..++++|+++..+.+...+..-+..|...-.++-.--+++.+.++|..++.
T Consensus 12 i~p~~~~~G~el~dve~~~~~~~~~lrV~ID~~~gv~lddC~~vSr~is~~LD 64 (152)
T PRK14640 12 LEAPVVALGFELWGIEFIRAGKHSTLRVYIDGENGVSVENCAEVSHQVGAIMD 64 (152)
T ss_pred HHHHHHhcCCEEEEEEEEecCCCcEEEEEEECCCCCCHHHHHHHHHHHHHHhc
Confidence 33456889999999999987665444444432222222367788888888886
No 186
>cd04933 ACT_AK1-AT_1 ACT domains located C-terminal to the catalytic domain of a monofunctional, lysine-sensitive, plant aspartate kinase 1 (AK1). This CD includes the first of two ACT domains located C-terminal to the catalytic domain of a monofunctional, lysine-sensitive, plant aspartate kinase 1 (AK1), which can be synergistically inhibited by S-adenosylmethionine. This isoenzyme is found in higher plants, Arabidopsis thaliana (AT) and Zea mays, and also in Chlorophyta. Like the Escherichia coli AKIII (LysC), Arabidopsis AK1 binds two feedback allosteric inhibitor lysine molecules at the dimer interface located between the ACT1 domain of two subunits. A loop in common is involved in the binding of both Lys and S-adenosylmethionine providing an explanation for the synergistic inhibition by these effectors. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=25.49 E-value=2.6e+02 Score=19.99 Aligned_cols=25 Identities=12% Similarity=0.044 Sum_probs=22.1
Q ss_pred CCCChHHHHHHHHHhCCceEEEEEE
Q 027547 137 DDQFIFYEVIRILHQDGAEILNAKF 161 (222)
Q Consensus 137 ~~~~~L~~vl~~Le~lgL~V~~a~~ 161 (222)
..++.+.+|+++|.+.|+.|-....
T Consensus 13 ~~~g~~a~IF~~La~~~InVDmI~q 37 (78)
T cd04933 13 GQYGFLAKVFSIFETLGISVDVVAT 37 (78)
T ss_pred CccCHHHHHHHHHHHcCCcEEEEEe
Confidence 5689999999999999999988864
No 187
>PRK08639 threonine dehydratase; Validated
Probab=25.42 E-value=2.3e+02 Score=26.59 Aligned_cols=56 Identities=14% Similarity=0.110 Sum_probs=34.6
Q ss_pred CCCCChHHHHHHHHHhCCceEEEEEEEEeCC--EEEEEEEEEeccCccccCHHHHHHHHHH
Q 027547 136 VDDQFIFYEVIRILHQDGAEILNAKFSVVGN--TIFHVIHAEIRDSMFGFGAAKISERLKG 194 (222)
Q Consensus 136 ~~~~~~L~~vl~~Le~lgL~V~~a~~s~~~~--~~~~ti~~kv~~~~~~~~~~~l~~aL~~ 194 (222)
+++||.|.++++.+-..+.+|...+.-...+ .....+..++.+. ...++|.++|.+
T Consensus 344 pdrPGaL~~~l~~i~~~~~NI~~~~~~~~~~~~~~~v~v~iE~~~~---~h~~~i~~~L~~ 401 (420)
T PRK08639 344 PQRPGALREFLDDVLGPNDDITRFEYLKKNNRETGPVLVGIELKDA---EDYDGLIERMEA 401 (420)
T ss_pred CCCCCHHHHHHHHHhcCCCcEEEEEEeecCCCCceEEEEEEEeCCH---HHHHHHHHHHHH
Confidence 5899999999996666666888887653222 2223344444431 234566666655
No 188
>PRK11790 D-3-phosphoglycerate dehydrogenase; Provisional
Probab=24.85 E-value=1.4e+02 Score=27.99 Aligned_cols=60 Identities=15% Similarity=0.177 Sum_probs=43.6
Q ss_pred eEEEEEEcCCCCChHHHHHHHHHhCCceEEEEEEEEeCCEEEEEEEEEeccCccccCHHHHHHHHHH
Q 027547 128 LEVILTSGVDDQFIFYEVIRILHQDGAEILNAKFSVVGNTIFHVIHAEIRDSMFGFGAAKISERLKG 194 (222)
Q Consensus 128 v~V~v~~~~~~~~~L~~vl~~Le~lgL~V~~a~~s~~~~~~~~ti~~kv~~~~~~~~~~~l~~aL~~ 194 (222)
..+.++- .++||++.+|...|-++++.|-+-.....++..+..|.+. + ...+++.+.|++
T Consensus 339 ~rlii~h-~d~pG~ia~it~~l~~~~iNI~~m~~~~~~~~A~~iie~D--~----~~~~~~~~~i~~ 398 (409)
T PRK11790 339 HRLLHIH-ENRPGVLAAINQIFAEQGINIAAQYLQTDGEIGYVVIDVD--A----DYAEEALDALKA 398 (409)
T ss_pred ceEEEEe-CCCCCHHHHHHHHHHhcCCCHHHheeccCCCEEEEEEEeC--C----CCcHHHHHHHHc
Confidence 3344433 5889999999999999999998888888888887777442 2 224466666654
No 189
>COG0440 IlvH Acetolactate synthase, small (regulatory) subunit [Amino acid transport and metabolism]
Probab=24.63 E-value=1.8e+02 Score=24.20 Aligned_cols=59 Identities=12% Similarity=0.072 Sum_probs=45.7
Q ss_pred CCCChHHHHHHHHHhCCceEEEEEEEEeC--CEEEEEEEEEeccCccccCHHHHHHHHHHHHhcc
Q 027547 137 DDQFIFYEVIRILHQDGAEILNAKFSVVG--NTIFHVIHAEIRDSMFGFGAAKISERLKGFVSGC 199 (222)
Q Consensus 137 ~~~~~L~~vl~~Le~lgL~V~~a~~s~~~--~~~~~ti~~kv~~~~~~~~~~~l~~aL~~~I~~~ 199 (222)
+.||.|.++...+-..|+++-+..+...+ +....+|.+.. + ....+++..-|.+++.-.
T Consensus 13 ne~GvLsRv~glfsrRG~NIeSltv~~tE~~~~SRiTivv~g-~---~~~~EQi~kQL~kLidV~ 73 (163)
T COG0440 13 NEPGVLSRVTGLFSRRGYNIESLTVGPTETPGLSRITIVVSG-D---EQVLEQIIKQLNKLIDVL 73 (163)
T ss_pred CCCCeeehhhHHHHhcCcccceEEEEecCCCCceEEEEEEcC-C---cchHHHHHHHHHhhccce
Confidence 78999999999999999999999988554 34556666655 2 245788888888888754
No 190
>KOG2663 consensus Acetolactate synthase, small subunit [Amino acid transport and metabolism]
Probab=24.30 E-value=1.5e+02 Score=26.78 Aligned_cols=66 Identities=11% Similarity=0.121 Sum_probs=48.1
Q ss_pred EEEEEcCCCCChHHHHHHHHHhCCceEEEEEEEEeCCEEEE--EEEEEeccCccccCHHHHHHHHHHHHhccc
Q 027547 130 VILTSGVDDQFIFYEVIRILHQDGAEILNAKFSVVGNTIFH--VIHAEIRDSMFGFGAAKISERLKGFVSGCA 200 (222)
Q Consensus 130 V~v~~~~~~~~~L~~vl~~Le~lgL~V~~a~~s~~~~~~~~--ti~~kv~~~~~~~~~~~l~~aL~~~I~~~~ 200 (222)
+.+.. .+.+|+|.+|--+|-.-|+.|-+.-++...+..++ ||.++-.++- .+++.+-|.++++=..
T Consensus 80 inclV-qnEpGvlsRisGvlAaRGfNIdSLvVc~tevk~LsrmTIVl~Gtd~V----veQa~rQiedlVnV~a 147 (309)
T KOG2663|consen 80 INCLV-QNEPGVLSRISGVLAARGFNIDSLVVCLTEVKALSRMTIVLQGTDGV----VEQARRQIEDLVNVYA 147 (309)
T ss_pred EEEEe-cCCchHHHHHHHHHHhccCCchheeeechhhhhhhhceEEEeccHHH----HHHHHHHHHHhhhhhe
Confidence 34444 37899999999999999999999999887777666 8877654422 5566666666665443
No 191
>PTZ00324 glutamate dehydrogenase 2; Provisional
Probab=24.08 E-value=5.4e+02 Score=27.49 Aligned_cols=78 Identities=10% Similarity=0.063 Sum_probs=53.4
Q ss_pred CCeeEEEeeC-CeeEEEEEEc----CCCCChHHHHHHHHHhCCceEEEEEEEEe-CCEEEEEEEEEeccCccccCHHHHH
Q 027547 116 APEIEIHEMG-SNLEVILTSG----VDDQFIFYEVIRILHQDGAEILNAKFSVV-GNTIFHVIHAEIRDSMFGFGAAKIS 189 (222)
Q Consensus 116 ~p~VeV~~~g-~~v~V~v~~~----~~~~~~L~~vl~~Le~lgL~V~~a~~s~~-~~~~~~ti~~kv~~~~~~~~~~~l~ 189 (222)
-|.+++...+ +.-.+++..+ ....+.|+.+.+.+.-+||.+..+-+=++ ++..+|++.++-.... ......+.
T Consensus 216 g~~i~~~~~~~~~~~~r~~~a~~r~~~~~~~~s~~~~~~~~~~l~~~R~Y~e~fsngv~i~s~yv~~~~~~-~~~~~~~~ 294 (1002)
T PTZ00324 216 GPVLHVNEVPRGGVSFTMAMAFRRRYYTASFFSRFGEIVTFHGAYSMSKYVEPFSNGVQVYTFFIRGLTAD-DNPDLSIE 294 (1002)
T ss_pred CCeEEEEecCCCCcEEEEEEEEecCCcHhhHHHHHHHHHHhcCCccceEEEEEeeCCcEEEEEEEecCCCC-CcccccHH
Confidence 4567776655 3233344332 23358999999999999999999998877 7788899999866543 12234566
Q ss_pred HHHHH
Q 027547 190 ERLKG 194 (222)
Q Consensus 190 ~aL~~ 194 (222)
+.+++
T Consensus 295 ~~~~~ 299 (1002)
T PTZ00324 295 DRASL 299 (1002)
T ss_pred HHHHh
Confidence 66666
No 192
>PF12344 UvrB: Ultra-violet resistance protein B; InterPro: IPR024759 This entry represents a domain found towards the C terminus of the ultraviolet resistance protein B (UvrB). UvrB conveys mutational resistance against UV light to various different species []. This domain is approximately 40 amino acids in length and contains two conserved sequence motifs: YAD and RRR.; PDB: 2D7D_A 2NMV_A 3UWX_B 1D2M_A 1C4O_A 2FDC_A 1D9Z_A 1T5L_B 1D9X_A.
Probab=23.96 E-value=1.4e+02 Score=19.44 Aligned_cols=33 Identities=21% Similarity=0.386 Sum_probs=21.6
Q ss_pred hhhhhhHHHHHHHHHHHHHHHHHHhcCCCCCCC
Q 027547 25 TKIERKTIEKNRRDQMKNLYSTLKSLLPNQPSK 57 (222)
Q Consensus 25 ~~~~h~~~ER~RR~~mn~~~~~LrsLlP~~~~~ 57 (222)
..+..-..|-.||..+...|-.-..++|..-.+
T Consensus 8 ~SM~~ai~eT~rRR~~Q~~yN~~h~ItP~ti~k 40 (44)
T PF12344_consen 8 DSMQKAIDETNRRREIQIAYNKEHGITPKTIKK 40 (44)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHT--------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHcCCCCcCcCc
Confidence 345667789999999999999999999987543
No 193
>PRK14634 hypothetical protein; Provisional
Probab=23.93 E-value=3.6e+02 Score=21.84 Aligned_cols=51 Identities=8% Similarity=-0.037 Sum_probs=33.9
Q ss_pred HHHHhCCceEEEEEEEEeCCEEEEEEEEEeccC--ccccCHHHHHHHHHHHHh
Q 027547 147 RILHQDGAEILNAKFSVVGNTIFHVIHAEIRDS--MFGFGAAKISERLKGFVS 197 (222)
Q Consensus 147 ~~Le~lgL~V~~a~~s~~~~~~~~ti~~kv~~~--~~~~~~~~l~~aL~~~I~ 197 (222)
.+++++|+++..+.+...+...+..|...-.++ -.--+++.+.++|-.++.
T Consensus 15 ~~~~~~G~elvdve~~~~~~~~~lrV~ID~~~g~~v~lddC~~vSr~is~~LD 67 (155)
T PRK14634 15 ATAADKGFELCGIQVLTHLQPMTLQVQIRRSSGSDVSLDDCAGFSGPMGEALE 67 (155)
T ss_pred HHHHHcCCEEEEEEEEeCCCCcEEEEEEECCCCCcccHHHHHHHHHHHHHHhc
Confidence 356789999999999987665544444432233 112357778888877776
No 194
>PF02576 DUF150: Uncharacterised BCR, YhbC family COG0779; InterPro: IPR003728 The RimP protein facilitates maturation of the 30S ribsomal subunit, and is required for the efficient production of translationally competent ribosmomes [].; PDB: 1IB8_A.
Probab=23.51 E-value=1.8e+02 Score=22.90 Aligned_cols=51 Identities=12% Similarity=0.187 Sum_probs=29.1
Q ss_pred HHHHhCCceEEEEEEEEeCCEEEEEEEEEeccCccccCHHHHHHHHHHHHh
Q 027547 147 RILHQDGAEILNAKFSVVGNTIFHVIHAEIRDSMFGFGAAKISERLKGFVS 197 (222)
Q Consensus 147 ~~Le~lgL~V~~a~~s~~~~~~~~ti~~kv~~~~~~~~~~~l~~aL~~~I~ 197 (222)
..++++|+++..+++...++..+..+.+--..+-.--++..+.+++...+.
T Consensus 4 ~~~~~~g~~l~~v~~~~~~~~~~l~V~id~~~gv~lddc~~~sr~i~~~LD 54 (141)
T PF02576_consen 4 PLLEELGLELVDVEVVKEGGNRILRVFIDKDGGVSLDDCEKVSRAISALLD 54 (141)
T ss_dssp HHH-S-SSEEEEEEEEEETTEEEEEEEEE-SS---HHHHHHHHHHHGGGTT
T ss_pred cchhhcCCEEEEEEEEECCCCEEEEEEEEeCCCCCHHHHHHHHHHHHHHHc
Confidence 457889999999999999887665555543222111234455555555444
No 195
>cd04912 ACT_AKiii-LysC-EC-like_1 ACT domains located C-terminal to the catalytic domain of the lysine-sensitive aspartokinase isoenzyme AKIII. This CD includes the first of two ACT domains located C-terminal to the catalytic domain of the lysine-sensitive aspartokinase isoenzyme AKIII, a monofunctional class enzyme found in bacteria (Escherichia coli (EC) LysC) and plants, (Zea mays Ask1, Ask2, and Arabidopsis thaliana AK1). Aspartokinase is the first enzyme in the aspartate metabolic pathway and catalyzes the conversion of aspartate and ATP to aspartylphosphate and ADP. Like the A. thaliana AK1 (AK1-AT), the E. coli AKIII (LysC) has two bound feedback allosteric inhibitor lysine molecules at the dimer interface located between the ACT1 domain of two subunits. The lysine-sensitive plant isoenzyme is synergistically inhibited by S-adenosylmethionine. A homolog of this group appears to be the Saccharomyces cerevisiae AK (Hom3) which clusters with this group as well. Members of this CD
Probab=23.37 E-value=2.5e+02 Score=19.23 Aligned_cols=25 Identities=12% Similarity=0.115 Sum_probs=21.8
Q ss_pred CCCChHHHHHHHHHhCCceEEEEEE
Q 027547 137 DDQFIFYEVIRILHQDGAEILNAKF 161 (222)
Q Consensus 137 ~~~~~L~~vl~~Le~lgL~V~~a~~ 161 (222)
..++.+.+++++|.+.|+.|.....
T Consensus 13 ~~~g~~~~if~~L~~~~I~v~~i~~ 37 (75)
T cd04912 13 GAHGFLAKVFEIFAKHGLSVDLIST 37 (75)
T ss_pred CCccHHHHHHHHHHHcCCeEEEEEc
Confidence 5689999999999999999977753
No 196
>PRK00092 ribosome maturation protein RimP; Reviewed
Probab=23.30 E-value=3.4e+02 Score=21.75 Aligned_cols=52 Identities=10% Similarity=0.127 Sum_probs=35.0
Q ss_pred HHHHHhCCceEEEEEEEEeCCEEEEEEEEEeccCccccCHHHHHHHHHHHHh
Q 027547 146 IRILHQDGAEILNAKFSVVGNTIFHVIHAEIRDSMFGFGAAKISERLKGFVS 197 (222)
Q Consensus 146 l~~Le~lgL~V~~a~~s~~~~~~~~ti~~kv~~~~~~~~~~~l~~aL~~~I~ 197 (222)
-.+++.+|+++..+.+...++..+..|.+.-.++-.--+++.+.++|..++.
T Consensus 14 ~~~~~~~g~~l~dv~~~~~~~~~~l~V~Id~~~gv~iddc~~~Sr~is~~LD 65 (154)
T PRK00092 14 EPVVEALGYELVDVEYVKEGRDSTLRIYIDKEGGIDLDDCEEVSRQISAVLD 65 (154)
T ss_pred HHHHHHCCCEEEEEEEEecCCCcEEEEEEECCCCCCHHHHHHHHHHHHHHhc
Confidence 3456779999999999987766555555543222222356778888877776
No 197
>COG0259 PdxH Pyridoxamine-phosphate oxidase [Coenzyme metabolism]
Probab=23.26 E-value=65 Score=27.88 Aligned_cols=38 Identities=29% Similarity=0.601 Sum_probs=28.2
Q ss_pred CHHHHHHHHHHHHhcccccccccCCCCCC-cccCCCCCCC
Q 027547 184 GAAKISERLKGFVSGCASEGEMQLPELWD-FEINPELWEF 222 (222)
Q Consensus 184 ~~~~l~~aL~~~I~~~~~~~~~~~~~~~~-~~~~~~~~~~ 222 (222)
+-..|..++.++-.+ +..+++|.|.-|- |.|-|+.+||
T Consensus 148 ~r~~Le~~~ae~~~k-f~~~~iP~P~~WgG~ri~p~~iEF 186 (214)
T COG0259 148 SRAALEAKVAELTAK-FADGEIPRPPHWGGFRIVPESIEF 186 (214)
T ss_pred CHHHHHHHHHHHHHh-cCCCCCCCCCCccceEeeeeEEEE
Confidence 455666666665554 4566699999995 8999998887
No 198
>PF06189 5-nucleotidase: 5'-nucleotidase; InterPro: IPR010394 This family consists of both eukaryotic and prokaryotic 5'-nucleotidase sequences (3.1.3.5 from EC).; GO: 0000166 nucleotide binding, 0000287 magnesium ion binding, 0008253 5'-nucleotidase activity, 0009117 nucleotide metabolic process, 0005737 cytoplasm
Probab=23.13 E-value=64 Score=28.87 Aligned_cols=67 Identities=15% Similarity=0.171 Sum_probs=45.7
Q ss_pred eeEEEEEEcCCCCChHHHHHHHHHhCCceEEEEEEEEeCCE--EEEEEEEEeccCccccCHHHHHHHHHHHHh
Q 027547 127 NLEVILTSGVDDQFIFYEVIRILHQDGAEILNAKFSVVGNT--IFHVIHAEIRDSMFGFGAAKISERLKGFVS 197 (222)
Q Consensus 127 ~v~V~v~~~~~~~~~L~~vl~~Le~lgL~V~~a~~s~~~~~--~~~ti~~kv~~~~~~~~~~~l~~aL~~~I~ 197 (222)
-++|.|.+ ++.+..=.+|++.++.+||+|..+-++.-..- .+-.+.+...= ..+.++++++|..=+-
T Consensus 36 ~VEVVllS-RNspdTGlRv~nSI~hygL~ItR~~ft~G~~~~~Yl~af~v~LFL---San~~DV~~Ai~~G~~ 104 (264)
T PF06189_consen 36 LVEVVLLS-RNSPDTGLRVFNSIRHYGLDITRAAFTGGESPYPYLKAFNVDLFL---SANEDDVQEAIDAGIP 104 (264)
T ss_pred ceEEEEEe-cCCHHHHHHHHHhHHHhCCcceeeeecCCCCHHHHHHHhCCceEe---eCCHHHHHHHHHcCCC
Confidence 46677755 56777788999999999999998887754442 22233443332 2478888888876443
No 199
>COG1076 DjlA DnaJ-domain-containing proteins 1 [Posttranslational modification, protein turnover, chaperones]
Probab=23.08 E-value=50 Score=27.16 Aligned_cols=58 Identities=17% Similarity=0.275 Sum_probs=46.3
Q ss_pred hhhHHHHHHHHHHHHHHHHHHhcCCCCCCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 027547 28 ERKTIEKNRRDQMKNLYSTLKSLLPNQPSKEELSLPDQVDEAINYIKMLETKLKECKKRKES 89 (222)
Q Consensus 28 ~h~~~ER~RR~~mn~~~~~LrsLlP~~~~~~k~si~~iL~~ai~YIk~Lq~~v~~L~~~~~~ 89 (222)
..+..+...+..+.....++|.++=... .++++. .+.-.+||+.+++++++++...+.
T Consensus 115 ~l~~l~~~~~~~~~~i~~~~r~l~~e~~-~d~a~~---~~~~~e~~~~~~~~~~~i~~a~~~ 172 (174)
T COG1076 115 ALKVLGVEIKADQDAIKKAYRKLLSEQH-PDKAAA---KGLKLEFIEKLKEKLQEIQEAYED 172 (174)
T ss_pred HHHHhcCchhhhHHHHHHHHHHHHHhcC-HHHHHH---hcCCHHHHHHHHHHHHHHHHHHHh
Confidence 4556667778888888999999985555 566766 888899999999999999987653
No 200
>cd04910 ACT_AK-Ectoine_1 ACT domains located C-terminal to the catalytic domain of the aspartokinase of the ectoine (1,4,5,6-tetrahydro-2-methyl pyrimidine-4-carboxylate) biosynthetic pathway. This CD includes the first of two ACT domains located C-terminal to the catalytic domain of the aspartokinase of the ectoine (1,4,5,6-tetrahydro-2-methyl pyrimidine-4-carboxylate) biosynthetic pathway found in Methylomicrobium alcaliphilum, Vibrio cholerae, and various other halotolerant or halophilic bacteria. Bacteria exposed to hyperosmotic stress accumulate organic solutes called 'compatible solutes' of which ectoine, a heterocyclic amino acid, is one. Apart from its osmotic function, ectoine also exhibits a protective effect on proteins, nucleic acids and membranes against a variety of stress factors. de novo synthesis of ectoine starts with the phosphorylation of L-aspartate and shares its first two enzymatic steps with the biosynthesis of amino acids of the aspartate family: aspartokinase
Probab=23.02 E-value=2.8e+02 Score=19.61 Aligned_cols=52 Identities=17% Similarity=0.230 Sum_probs=34.4
Q ss_pred CCCChHHHHHHHHHhCCceEEEEEEEEeCCEEEEEEEEEeccCccccCHHHHHHHHHHHH
Q 027547 137 DDQFIFYEVIRILHQDGAEILNAKFSVVGNTIFHVIHAEIRDSMFGFGAAKISERLKGFV 196 (222)
Q Consensus 137 ~~~~~L~~vl~~Le~lgL~V~~a~~s~~~~~~~~ti~~kv~~~~~~~~~~~l~~aL~~~I 196 (222)
...|.-.+||++|.++++.+++- .++.+.+.|.+.... -...++..+|.+..
T Consensus 13 G~~g~d~~i~~~l~~~~v~ii~K--~~nANtit~yl~~~~------k~~~r~~~~Le~~~ 64 (71)
T cd04910 13 GEVGYDLEILELLQRFKVSIIAK--DTNANTITHYLAGSL------KTIKRLTEDLENRF 64 (71)
T ss_pred CChhHHHHHHHHHHHcCCeEEEE--ecCCCeEEEEEEcCH------HHHHHHHHHHHHhC
Confidence 34678889999999999999988 555566555554432 23455555554443
No 201
>KOG4005 consensus Transcription factor XBP-1 [Transcription]
Probab=22.87 E-value=5.2e+02 Score=23.07 Aligned_cols=58 Identities=19% Similarity=0.239 Sum_probs=29.6
Q ss_pred hhhhhhH-HHHHHHHHHHHHHHHHHhcCCCCCCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 027547 25 TKIERKT-IEKNRRDQMKNLYSTLKSLLPNQPSKEELSLPDQVDEAINYIKMLETKLKECKKRKESLQ 91 (222)
Q Consensus 25 ~~~~h~~-~ER~RR~~mn~~~~~LrsLlP~~~~~~k~si~~iL~~ai~YIk~Lq~~v~~L~~~~~~l~ 91 (222)
+|.+|.. -|+--|.+++.+..+=-+ ...|... ..+-=.-|+.|.++-+.|..+.+.|.
T Consensus 59 ~RL~HLS~EEK~~RrKLKNRVAAQta------RDrKKaR---m~eme~~i~dL~een~~L~~en~~Lr 117 (292)
T KOG4005|consen 59 RRLDHLSWEEKVQRRKLKNRVAAQTA------RDRKKAR---MEEMEYEIKDLTEENEILQNENDSLR 117 (292)
T ss_pred HhhcccCHHHHHHHHHHHHHHHHhhh------hhHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445654 455577777777665332 1112122 23323336667666666665555443
No 202
>KOG3582 consensus Mlx interactors and related transcription factors [Transcription]
Probab=22.83 E-value=23 Score=35.86 Aligned_cols=61 Identities=18% Similarity=0.157 Sum_probs=46.5
Q ss_pred hhhhhhHHHHHHHHHHHHHHHHHHhcCCCCCC--CCCCChhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 027547 25 TKIERKTIEKNRRDQMKNLYSTLKSLLPNQPS--KEELSLPDQVDEAINYIKMLETKLKECKKRKE 88 (222)
Q Consensus 25 ~~~~h~~~ER~RR~~mn~~~~~LrsLlP~~~~--~~k~si~~iL~~ai~YIk~Lq~~v~~L~~~~~ 88 (222)
.+..|...+|+||-...+.|.+|.+|.|...+ ..+.|...||. +.|+.+++.-+.+.++.+
T Consensus 787 v~a~sih~lrr~~~~~~dq~~sL~alrp~v~~~~~ql~S~tS~L~---dp~~~~eq~ska~~e~~~ 849 (856)
T KOG3582|consen 787 VSAGSIHALRRTRLNWLDQFCSLPALRPQVLLNLRQLLSSTSILT---DPIKQPEQASKAVTEKIE 849 (856)
T ss_pred eecchHHHHHHHHHHHhhccccHHHHHHHHHhhHHHhhhhhhccc---CcccchHHHHHHHHhhhh
Confidence 34568899999999999999999999997643 23444444487 788888888877776544
No 203
>PRK15385 magnesium transport protein MgtC; Provisional
Probab=22.71 E-value=5.2e+02 Score=22.54 Aligned_cols=39 Identities=5% Similarity=0.001 Sum_probs=29.1
Q ss_pred eeEEEEEEcCC-CCChHHHHHHHHHhCCceEEEEEEEEeC
Q 027547 127 NLEVILTSGVD-DQFIFYEVIRILHQDGAEILNAKFSVVG 165 (222)
Q Consensus 127 ~v~V~v~~~~~-~~~~L~~vl~~Le~lgL~V~~a~~s~~~ 165 (222)
...+.|+|... .......+++.|++.++.+.+.++...+
T Consensus 142 ~~~~~v~~~~~~~~~vr~~L~~~l~~~~~~~~~l~~~~~~ 181 (225)
T PRK15385 142 RYILKVTCNKEDESAVRQWLLNIVKEAAICLQGLGSVPAQ 181 (225)
T ss_pred EEEEEEEEcCcchhHHHHHHHHHHHhCCCceEEeEeeecC
Confidence 45677778522 2245788889999999999999997653
No 204
>PRK14646 hypothetical protein; Provisional
Probab=22.69 E-value=4.2e+02 Score=21.48 Aligned_cols=54 Identities=9% Similarity=-0.049 Sum_probs=36.8
Q ss_pred HHHHHHHhCCceEEEEEEEEeCCEEEEEEEEEeccCc--cccCHHHHHHHHHHHHh
Q 027547 144 EVIRILHQDGAEILNAKFSVVGNTIFHVIHAEIRDSM--FGFGAAKISERLKGFVS 197 (222)
Q Consensus 144 ~vl~~Le~lgL~V~~a~~s~~~~~~~~ti~~kv~~~~--~~~~~~~l~~aL~~~I~ 197 (222)
-+-.+++++|+++..+.+...++..+..|...-.++. .--+|+.+.++|-.++.
T Consensus 12 li~p~~~~~G~eLvdve~~~~~~~~~LrV~IDk~~g~gVtldDC~~vSr~is~~LD 67 (155)
T PRK14646 12 LLEKVANEFDLKICSLNIQTNQNPIVIKIIIKKTNGDDISLDDCALFNTPASEEIE 67 (155)
T ss_pred HHHHHHHHcCCEEEEEEEEeCCCCeEEEEEEECCCCCCccHHHHHHHHHHHHHHhC
Confidence 3445678899999999999887766555555432221 12357788888888776
No 205
>TIGR01124 ilvA_2Cterm threonine ammonia-lyase, biosynthetic, long form. Forms scoring between the trusted and noise cutoff tend to branch with this subgroup of threonine ammonia-lyase phylogenetically but have only a single copy of the C-terminal domain.
Probab=22.62 E-value=4.1e+02 Score=25.68 Aligned_cols=54 Identities=11% Similarity=0.185 Sum_probs=33.8
Q ss_pred CCCCChHHHHHHHHHhCCceEEEEEEEEeC-CEEEEEEEEEeccCccccCHHHHHHHHHH
Q 027547 136 VDDQFIFYEVIRILHQDGAEILNAKFSVVG-NTIFHVIHAEIRDSMFGFGAAKISERLKG 194 (222)
Q Consensus 136 ~~~~~~L~~vl~~Le~lgL~V~~a~~s~~~-~~~~~ti~~kv~~~~~~~~~~~l~~aL~~ 194 (222)
+.+||.|.++++.|-. .+|...+....+ +.....+.+++.+. ...+.|.++|++
T Consensus 333 PerPGal~~f~~~i~~--~nItef~yr~~~~~~a~v~vgie~~~~---~~~~~l~~~L~~ 387 (499)
T TIGR01124 333 PEQPGSFLKFCELLGN--RNITEFNYRYADRKDAHIFVGVQLSNP---QERQEILARLND 387 (499)
T ss_pred CCCCCHHHHHHHHhhh--cceEEEEEEecCCCeEEEEEEEEeCCH---HHHHHHHHHHHH
Confidence 5899999999999986 466666655332 23334444555432 245666666654
No 206
>PRK12483 threonine dehydratase; Reviewed
Probab=22.19 E-value=4.8e+02 Score=25.47 Aligned_cols=54 Identities=9% Similarity=0.122 Sum_probs=34.1
Q ss_pred CCCCChHHHHHHHHHhCCceEEEEEEEEeC-CEEEEEEEEEeccCccccCH-HHHHHHHHH
Q 027547 136 VDDQFIFYEVIRILHQDGAEILNAKFSVVG-NTIFHVIHAEIRDSMFGFGA-AKISERLKG 194 (222)
Q Consensus 136 ~~~~~~L~~vl~~Le~lgL~V~~a~~s~~~-~~~~~ti~~kv~~~~~~~~~-~~l~~aL~~ 194 (222)
+++||.|.++++.|-+. +|...+....+ ......+.++..+.. .. ++|.++|++
T Consensus 353 ~d~pG~l~~~~~~l~~~--ni~~~~~~~~~~~~~~v~v~ie~~~~~---~~~~~i~~~l~~ 408 (521)
T PRK12483 353 PEQPGSFKAFCAALGKR--QITEFNYRYADAREAHLFVGVQTHPRH---DPRAQLLASLRA 408 (521)
T ss_pred CCCCCHHHHHHHHhhhc--CeEEEEEEecCCCeeEEEEEEEeCChh---hhHHHHHHHHHH
Confidence 58999999999999877 77777766432 234444555554422 33 455555544
No 207
>PF05088 Bac_GDH: Bacterial NAD-glutamate dehydrogenase
Probab=21.74 E-value=5.1e+02 Score=29.05 Aligned_cols=70 Identities=19% Similarity=0.119 Sum_probs=45.0
Q ss_pred EEEEEEcCCCCChHHHHHHHHHhCCceEEEEEEE---E---eCCE-------------EEEEEEEEeccCccccCHHHHH
Q 027547 129 EVILTSGVDDQFIFYEVIRILHQDGAEILNAKFS---V---VGNT-------------IFHVIHAEIRDSMFGFGAAKIS 189 (222)
Q Consensus 129 ~V~v~~~~~~~~~L~~vl~~Le~lgL~V~~a~~s---~---~~~~-------------~~~ti~~kv~~~~~~~~~~~l~ 189 (222)
.|.|++ .+.|+++-.|..+|..+|+.|...... + .+|. .---|+.++.........+.|.
T Consensus 19 vI~IV~-dDmPFLVDSV~~~L~r~gl~I~~i~HPVl~V~RD~~G~L~~v~~~~~~~~~~ES~I~ieId~~~d~~~~~~L~ 97 (1528)
T PF05088_consen 19 VIEIVT-DDMPFLVDSVRMELNRQGLTIHLIIHPVLNVERDADGKLVAVGPADDSGGTRESWIHIEIDRQSDPEELEALR 97 (1528)
T ss_pred EEEEEc-CCCCcHHHHHHHHHHhCCCceEEEecCcEEEEECCCCcEEEecCCCCCCCceEEEEEEEEcCCCCHHHHHHHH
Confidence 355555 589999999999999999998876622 1 1121 1233555555543344566777
Q ss_pred HHHHHHHhcc
Q 027547 190 ERLKGFVSGC 199 (222)
Q Consensus 190 ~aL~~~I~~~ 199 (222)
+.|.+++.+-
T Consensus 98 ~~L~~VL~dV 107 (1528)
T PF05088_consen 98 EDLERVLEDV 107 (1528)
T ss_pred HHHHHHHHHH
Confidence 7777776643
No 208
>PF03698 UPF0180: Uncharacterised protein family (UPF0180); InterPro: IPR005370 The members of this family are small uncharacterised proteins.
Probab=21.69 E-value=2.8e+02 Score=20.24 Aligned_cols=55 Identities=16% Similarity=0.234 Sum_probs=34.6
Q ss_pred ChHHHHHHHHHhCCceEEEEEEEE-eCC----------E-EE----EEEEEEeccCccccCHHHHHHHHHHH
Q 027547 140 FIFYEVIRILHQDGAEILNAKFSV-VGN----------T-IF----HVIHAEIRDSMFGFGAAKISERLKGF 195 (222)
Q Consensus 140 ~~L~~vl~~Le~lgL~V~~a~~s~-~~~----------~-~~----~ti~~kv~~~~~~~~~~~l~~aL~~~ 195 (222)
..|+.|-++|++.|.+|+...-.. ..+ . ++ ....+.+-+.. +.++++|.+.|.+=
T Consensus 8 ~~Ls~v~~~L~~~GyeVv~l~~~~~~~~~daiVvtG~~~n~mg~~d~~~~~pVInA~-G~T~eEI~~~v~~r 78 (80)
T PF03698_consen 8 EGLSNVKEALREKGYEVVDLENEQDLQNVDAIVVTGQDTNMMGIQDTSTKVPVINAS-GLTAEEIVQEVEER 78 (80)
T ss_pred CCchHHHHHHHHCCCEEEecCCccccCCcCEEEEECCCcccccccccccCceEEecC-CCCHHHHHHHHHHh
Confidence 468899999999999999876332 111 1 11 12233333333 77899988888653
No 209
>PRK05771 V-type ATP synthase subunit I; Validated
Probab=21.47 E-value=4e+02 Score=26.42 Aligned_cols=22 Identities=18% Similarity=0.345 Sum_probs=17.0
Q ss_pred HHHHHHHHHHHHHHHhcCCCCC
Q 027547 34 KNRRDQMKNLYSTLKSLLPNQP 55 (222)
Q Consensus 34 R~RR~~mn~~~~~LrsLlP~~~ 55 (222)
.++..++++.+..|+...|...
T Consensus 49 ~~~~~~~~~~l~~L~~~~~~~~ 70 (646)
T PRK05771 49 RSLLTKLSEALDKLRSYLPKLN 70 (646)
T ss_pred HHHHHHHHHHHHHHHHhccccc
Confidence 4567778999999999887643
No 210
>PLN02905 beta-amylase
Probab=21.04 E-value=1.4e+02 Score=30.24 Aligned_cols=28 Identities=21% Similarity=0.199 Sum_probs=23.9
Q ss_pred chhhhhhHHHHHHHHHHHHHHHHHHhcC
Q 027547 24 PTKIERKTIEKNRRDQMKNLYSTLKSLL 51 (222)
Q Consensus 24 ~~~~~h~~~ER~RR~~mn~~~~~LrsLl 51 (222)
..|.+.+..||+||.-....|.-||.+=
T Consensus 85 ~ere~~~~rer~rrai~~~i~~glr~~g 112 (702)
T PLN02905 85 EEKERTKLRERHRRAITARILAGLRRHG 112 (702)
T ss_pred hhhhhhHHHHHHHHHHHHHHHHHHHhhc
Confidence 3577888999999999999999999863
No 211
>PF06305 DUF1049: Protein of unknown function (DUF1049); InterPro: IPR010445 This entry consists of several hypothetical bacterial proteins of unknown function.
Probab=20.91 E-value=1e+02 Score=20.76 Aligned_cols=17 Identities=35% Similarity=0.473 Sum_probs=9.4
Q ss_pred HHHHHHHHHHHHHHHHH
Q 027547 73 IKMLETKLKECKKRKES 89 (222)
Q Consensus 73 Ik~Lq~~v~~L~~~~~~ 89 (222)
++.+++++++++++.++
T Consensus 50 ~~~~~k~l~~le~e~~~ 66 (68)
T PF06305_consen 50 IRRLRKELKKLEKELEQ 66 (68)
T ss_pred HHHHHHHHHHHHHHHHh
Confidence 45555566666555544
No 212
>PRK09224 threonine dehydratase; Reviewed
Probab=20.69 E-value=5.7e+02 Score=24.70 Aligned_cols=55 Identities=11% Similarity=0.205 Sum_probs=34.0
Q ss_pred CCCCChHHHHHHHHHhCCceEEEEEEEEeC-CEEEEEEEEEeccCccccCHHHHHHHHHH
Q 027547 136 VDDQFIFYEVIRILHQDGAEILNAKFSVVG-NTIFHVIHAEIRDSMFGFGAAKISERLKG 194 (222)
Q Consensus 136 ~~~~~~L~~vl~~Le~lgL~V~~a~~s~~~-~~~~~ti~~kv~~~~~~~~~~~l~~aL~~ 194 (222)
+++||.|.++++.|- +.+|...+....+ +.....+.+++.+.. -+.+.|.++|++
T Consensus 336 PerPGaL~~f~~~l~--~~nItef~yr~~~~~~a~V~vgie~~~~~--~~~~~i~~~L~~ 391 (504)
T PRK09224 336 PEEPGSFLKFCELLG--GRNVTEFNYRYADAKEAHIFVGVQLSRGQ--EERAEIIAQLRA 391 (504)
T ss_pred CCCCCHHHHHHHHhc--cCcEEEEEEEecCCCeEEEEEEEEeCChh--hHHHHHHHHHHH
Confidence 589999999999998 5677766665432 233334445554422 124566666654
No 213
>PF07716 bZIP_2: Basic region leucine zipper; InterPro: IPR011700 The basic-leucine zipper (bZIP) transcription factors [, ] of eukaryotes are proteins that contain a basic region mediating sequence-specific DNA-binding, followed by a leucine zipper region (see IPR002158 from INTERPRO), which is required for dimerization.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0043565 sequence-specific DNA binding, 0046983 protein dimerization activity, 0006355 regulation of transcription, DNA-dependent; PDB: 1NWQ_A 1H89_B 1H88_A 1GTW_B 2E43_A 1IO4_A 1GU4_B 2E42_A 1H8A_B 1GU5_B ....
Probab=20.46 E-value=1.6e+02 Score=19.29 Aligned_cols=21 Identities=24% Similarity=0.358 Sum_probs=12.0
Q ss_pred HHHHHHHHHHHHHHHHHHHhh
Q 027547 71 NYIKMLETKLKECKKRKESLQ 91 (222)
Q Consensus 71 ~YIk~Lq~~v~~L~~~~~~l~ 91 (222)
.|+..|+.++..|+.+...|.
T Consensus 25 ~~~~~le~~~~~L~~en~~L~ 45 (54)
T PF07716_consen 25 QREEELEQEVQELEEENEQLR 45 (54)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 455666666666666555443
No 214
>COG4747 ACT domain-containing protein [General function prediction only]
Probab=20.41 E-value=4.5e+02 Score=21.01 Aligned_cols=38 Identities=8% Similarity=0.072 Sum_probs=25.3
Q ss_pred CCCCChHHHHHHHHHhCCceE--EEEEEEEeCCEEEEEEEE
Q 027547 136 VDDQFIFYEVIRILHQDGAEI--LNAKFSVVGNTIFHVIHA 174 (222)
Q Consensus 136 ~~~~~~L~~vl~~Le~lgL~V--~~a~~s~~~~~~~~ti~~ 174 (222)
.++||.|++|+++|-.+++.+ +-|-++.. +..+..+.+
T Consensus 77 eD~PG~l~~I~~vl~d~diNldYiYAFv~ek-~KAlli~r~ 116 (142)
T COG4747 77 EDVPGGLSRIAEVLGDADINLDYIYAFVTEK-QKALLIVRV 116 (142)
T ss_pred cCCCCcHHHHHHHHhhcCcCceeeeeeeecC-ceEEEEEEh
Confidence 478999999999999876654 44444433 445544443
No 215
>PF13224 DUF4032: Domain of unknown function (DUF4032)
Probab=20.32 E-value=1.9e+02 Score=24.03 Aligned_cols=40 Identities=18% Similarity=0.199 Sum_probs=33.7
Q ss_pred ChHHHHHHHHHhCCceEEEEEEEEeCCEEEEEEEEEeccC
Q 027547 140 FIFYEVIRILHQDGAEILNAKFSVVGNTIFHVIHAEIRDS 179 (222)
Q Consensus 140 ~~L~~vl~~Le~lgL~V~~a~~s~~~~~~~~ti~~kv~~~ 179 (222)
.....=++.|.++|++|--..+.+.++-....|..+|.+.
T Consensus 19 ~ri~~ri~rLN~LGFdV~El~~~~~~~g~~~~i~p~Vvd~ 58 (165)
T PF13224_consen 19 WRIEERIRRLNELGFDVGELEITTDDDGTRLRIQPKVVDA 58 (165)
T ss_pred HHHHHHHHHHHhcCCceeeeEeEEcCCCCEEEEEeeEeCC
Confidence 4556678899999999999999998877777888888774
No 216
>PRK14633 hypothetical protein; Provisional
Probab=20.22 E-value=4.6e+02 Score=21.06 Aligned_cols=52 Identities=12% Similarity=0.032 Sum_probs=33.4
Q ss_pred HHHHHHhCCceEEEEEEEEeCCEEEEEEEEEeccCccccCHHHHHHHHHHHHh
Q 027547 145 VIRILHQDGAEILNAKFSVVGNTIFHVIHAEIRDSMFGFGAAKISERLKGFVS 197 (222)
Q Consensus 145 vl~~Le~lgL~V~~a~~s~~~~~~~~ti~~kv~~~~~~~~~~~l~~aL~~~I~ 197 (222)
+-.+++++|+++..+.+...++. +..+...-.++-.--+|+.+.++|-.++.
T Consensus 10 v~p~~~~~G~eL~dve~~~~~~~-~lrV~ID~~~Gv~lddC~~vSr~i~~~LD 61 (150)
T PRK14633 10 VEPITADLGYILWGIEVVGSGKL-TIRIFIDHENGVSVDDCQIVSKEISAVFD 61 (150)
T ss_pred HHHHHHHCCCEEEEEEEEeCCCc-EEEEEEeCCCCCCHHHHHHHHHHHHHHhc
Confidence 44567889999999999876653 33333322222222357788888887776
No 217
>PRK09509 fieF ferrous iron efflux protein F; Reviewed
Probab=20.19 E-value=4.1e+02 Score=23.44 Aligned_cols=62 Identities=19% Similarity=0.159 Sum_probs=43.4
Q ss_pred CChHHHHHHHHHhC-C-ceEEEEEEEEeCCEEEEEEEEEeccCccccCHHHHHHHHHHHHhccc
Q 027547 139 QFIFYEVIRILHQD-G-AEILNAKFSVVGNTIFHVIHAEIRDSMFGFGAAKISERLKGFVSGCA 200 (222)
Q Consensus 139 ~~~L~~vl~~Le~l-g-L~V~~a~~s~~~~~~~~ti~~kv~~~~~~~~~~~l~~aL~~~I~~~~ 200 (222)
+....+|.+.+++. | .+|....+...|...+..++..+.....-.+.+++.+++++.|.+..
T Consensus 212 ~~~~~~I~~~i~~~~~v~~v~~l~~~~~G~~~~v~v~i~v~~~~~~~e~h~i~~~ie~~l~~~~ 275 (299)
T PRK09509 212 DEERQEIIDIVTSWPGVSGAHDLRTRQSGPTRFIQLHLEMEDNLPLVQAHMIADQVEQALLRRF 275 (299)
T ss_pred HHHHHHHHHHHHhCCCCcCceeeeeEeeCCeEEEEEEEEECCCCCHHHHHHHHHHHHHHHHHhC
Confidence 34667788888775 3 36777777788888777888888754322356677788888877654
Done!