Query 027547
Match_columns 222
No_of_seqs 132 out of 1162
Neff 6.4
Searched_HMMs 29240
Date Mon Mar 25 19:35:03 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/027547.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/027547hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1nlw_A MAD protein, MAX dimeri 99.7 4E-16 1.4E-20 113.5 9.4 68 25-92 1-68 (80)
2 1nkp_A C-MYC, MYC proto-oncoge 99.6 5.1E-16 1.7E-20 114.9 7.0 70 22-91 3-72 (88)
3 1am9_A Srebp-1A, protein (ster 99.6 5.7E-16 2E-20 113.1 6.6 67 24-92 5-71 (82)
4 1hlo_A Protein (transcription 99.6 1.7E-15 5.8E-20 110.0 7.9 70 22-92 9-78 (80)
5 1nkp_B MAX protein, MYC proto- 99.6 3E-15 1E-19 109.3 8.5 67 25-92 2-68 (83)
6 1a0a_A BHLH, protein (phosphat 99.5 1.4E-15 4.9E-20 105.8 2.7 56 25-80 2-61 (63)
7 3u5v_A Protein MAX, transcript 99.5 2.2E-15 7.5E-20 108.6 2.9 62 23-84 3-65 (76)
8 1an4_A Protein (upstream stimu 99.5 1.2E-14 4.1E-19 101.4 2.8 58 23-80 3-63 (65)
9 4ati_A MITF, microphthalmia-as 99.5 8.5E-14 2.9E-18 108.1 7.9 65 23-87 25-90 (118)
10 2ql2_B Neurod1, neurogenic dif 99.5 1.1E-13 3.9E-18 95.3 7.0 58 24-81 1-58 (60)
11 4h10_B Circadian locomoter out 99.4 2.8E-13 9.5E-18 96.2 6.6 61 22-84 5-65 (71)
12 1mdy_A Protein (MYOD BHLH doma 99.4 4.7E-13 1.6E-17 94.4 5.2 58 22-80 9-66 (68)
13 4h10_A ARYL hydrocarbon recept 99.3 3.8E-13 1.3E-17 96.1 2.2 56 23-78 7-63 (73)
14 2lfh_A DNA-binding protein inh 99.1 4.3E-11 1.5E-15 83.8 2.0 50 29-78 18-67 (68)
15 4f3l_A Mclock, circadian locom 98.8 4.7E-09 1.6E-13 94.3 4.6 55 22-79 9-64 (361)
16 4aya_A DNA-binding protein inh 98.7 4.2E-08 1.4E-12 73.2 6.9 52 31-82 31-82 (97)
17 4f3l_B BMAL1B; BHLH, PAS, circ 98.6 3E-08 1E-12 90.0 4.4 54 23-79 11-68 (387)
18 4ath_A MITF, microphthalmia-as 98.3 2.2E-06 7.4E-11 62.2 7.6 52 37-88 4-56 (83)
19 1zpv_A ACT domain protein; str 97.5 0.0014 4.7E-08 46.7 10.7 81 128-212 6-86 (91)
20 1u8s_A Glycine cleavage system 96.0 0.059 2E-06 43.5 10.2 66 128-198 7-72 (192)
21 2ko1_A CTR148A, GTP pyrophosph 95.7 0.038 1.3E-06 38.3 7.1 49 128-177 6-54 (88)
22 1u8s_A Glycine cleavage system 95.6 0.066 2.2E-06 43.2 9.2 75 128-206 94-176 (192)
23 2nyi_A Unknown protein; protei 95.4 0.079 2.7E-06 43.2 8.8 71 127-202 93-169 (195)
24 2nyi_A Unknown protein; protei 95.3 0.1 3.5E-06 42.5 9.4 49 128-177 6-54 (195)
25 3p96_A Phosphoserine phosphata 92.6 0.53 1.8E-05 42.0 9.2 76 128-206 13-88 (415)
26 3o1l_A Formyltetrahydrofolate 90.6 2.3 7.7E-05 37.3 10.8 69 128-199 23-93 (302)
27 3obi_A Formyltetrahydrofolate 89.9 1.9 6.4E-05 37.5 9.6 70 128-200 7-78 (288)
28 3n0v_A Formyltetrahydrofolate 89.8 2.2 7.6E-05 36.9 10.0 69 128-200 9-79 (286)
29 2f1f_A Acetolactate synthase i 89.3 0.72 2.5E-05 36.9 6.0 64 129-197 5-70 (164)
30 2jhe_A Transcription regulator 88.3 1.2 4.1E-05 34.2 6.6 35 129-164 2-36 (190)
31 2fgc_A Acetolactate synthase, 87.7 1.2 4.2E-05 36.7 6.5 65 129-198 31-97 (193)
32 2pc6_A Probable acetolactate s 87.4 0.71 2.4E-05 37.1 4.8 64 129-197 6-71 (165)
33 3lou_A Formyltetrahydrofolate 86.9 3.6 0.00012 35.7 9.4 71 128-199 11-83 (292)
34 3nrb_A Formyltetrahydrofolate 85.3 4.5 0.00015 35.0 9.2 67 128-199 8-76 (287)
35 1y7p_A Hypothetical protein AF 84.3 2.6 8.8E-05 35.5 6.9 61 128-195 5-70 (223)
36 1gmj_A ATPase inhibitor; coile 79.9 5.2 0.00018 28.6 6.1 44 37-91 35-78 (84)
37 3luy_A Probable chorismate mut 70.0 27 0.00091 30.8 9.5 60 137-199 217-277 (329)
38 2oqq_A Transcription factor HY 68.2 5.9 0.0002 24.6 3.4 22 71-92 3-24 (42)
39 3he4_B Synzip5; heterodimeric 67.1 7.3 0.00025 23.9 3.6 27 66-92 5-31 (46)
40 2f06_A Conserved hypothetical 66.0 38 0.0013 25.1 9.0 51 136-194 80-130 (144)
41 2l5g_A GPS2 protein, G protein 64.4 13 0.00046 22.4 4.4 26 65-90 9-34 (38)
42 2jee_A YIIU; FTSZ, septum, coi 62.1 11 0.00036 26.8 4.2 27 66-92 15-41 (81)
43 3mwb_A Prephenate dehydratase; 61.2 24 0.00083 30.8 7.4 60 137-199 211-271 (313)
44 2wt7_A Proto-oncogene protein 61.2 32 0.0011 22.7 6.4 44 33-92 1-44 (63)
45 2qmx_A Prephenate dehydratase; 60.2 42 0.0014 28.8 8.7 61 136-199 208-269 (283)
46 2qmw_A PDT, prephenate dehydra 59.9 33 0.0011 29.2 7.9 60 136-199 197-257 (267)
47 1zme_C Proline utilization tra 54.7 11 0.00039 24.6 3.3 23 70-92 43-65 (70)
48 1dh3_A Transcription factor CR 53.8 13 0.00044 24.1 3.3 22 71-92 22-43 (55)
49 2er8_A Regulatory protein Leu3 50.4 11 0.00037 25.0 2.7 22 70-91 48-69 (72)
50 2f06_A Conserved hypothetical 47.5 82 0.0028 23.2 9.2 57 129-194 8-64 (144)
51 1gd2_E Transcription factor PA 46.1 19 0.00066 24.6 3.4 21 70-90 28-48 (70)
52 1kd8_B GABH BLL, GCN4 acid bas 45.1 22 0.00076 21.2 3.0 19 73-91 3-21 (36)
53 2wq1_A General control protein 41.4 28 0.00097 20.4 3.0 19 73-91 2-20 (33)
54 2dgc_A Protein (GCN4); basic d 40.4 27 0.00091 23.2 3.3 24 69-92 28-51 (63)
55 1jnm_A Proto-oncogene C-JUN; B 40.4 27 0.00091 22.9 3.3 24 69-92 20-43 (62)
56 3c3g_A Alpha/beta peptide with 35.3 40 0.0014 19.7 3.0 19 73-91 2-20 (33)
57 1t2k_D Cyclic-AMP-dependent tr 35.3 36 0.0012 22.1 3.3 23 70-92 21-43 (61)
58 3byp_A CZRB protein; membrane 34.7 1.1E+02 0.0036 20.8 7.7 60 140-199 10-73 (94)
59 2zzt_A Putative uncharacterize 33.5 1.2E+02 0.0042 21.4 6.4 60 141-200 11-72 (107)
60 2i9o_A MHB8A peptide; beta-hai 32.7 19 0.00065 21.0 1.3 11 3-13 11-21 (37)
61 1kd8_A GABH AIV, GCN4 acid bas 32.5 31 0.0011 20.6 2.3 19 73-91 3-21 (36)
62 2qlw_A RHAU; mutarotase, isome 32.2 91 0.0031 24.2 5.7 74 140-213 64-143 (144)
63 1xkm_B Distinctin chain B; por 32.0 52 0.0018 17.7 2.9 17 66-82 6-22 (26)
64 2oxj_A Hybrid alpha/beta pepti 31.4 51 0.0017 19.4 3.0 20 73-92 3-22 (34)
65 1pyi_A Protein (pyrimidine pat 30.2 42 0.0014 23.2 3.2 23 70-92 47-69 (96)
66 2lqj_A Mg2+ transport protein; 30.1 92 0.0031 22.1 5.1 66 127-196 8-75 (94)
67 2hy6_A General control protein 29.7 37 0.0013 20.0 2.3 19 73-91 3-21 (34)
68 1hwt_C Protein (heme activator 28.9 19 0.00066 24.2 1.1 21 70-90 57-77 (81)
69 3c3f_A Alpha/beta peptide with 28.6 60 0.0021 19.0 3.0 19 73-91 3-21 (34)
70 1sc6_A PGDH, D-3-phosphoglycer 28.5 1.7E+02 0.0059 26.0 7.7 40 136-175 339-378 (404)
71 2dtj_A Aspartokinase; protein- 27.8 2E+02 0.007 22.1 7.3 48 128-175 16-66 (178)
72 1phz_A Protein (phenylalanine 27.5 71 0.0024 29.2 4.9 59 136-198 42-101 (429)
73 3w03_C DNA repair protein XRCC 27.3 67 0.0023 26.0 4.3 32 61-92 142-173 (184)
74 3h90_A Ferrous-iron efflux pum 27.2 2.5E+02 0.0086 23.1 8.2 62 139-200 205-268 (283)
75 3m48_A General control protein 27.1 40 0.0014 19.7 2.1 18 74-91 3-20 (33)
76 3coq_A Regulatory protein GAL4 26.6 57 0.0019 22.0 3.3 23 70-92 44-66 (89)
77 2dt9_A Aspartokinase; protein- 26.5 2.1E+02 0.0072 21.6 7.4 48 128-175 17-67 (167)
78 2jqq_A Conserved oligomeric go 26.4 37 0.0013 27.9 2.5 45 37-85 53-97 (204)
79 2akf_A Coronin-1A; coiled coil 25.7 92 0.0032 17.7 3.4 18 73-90 8-25 (32)
80 1ygy_A PGDH, D-3-phosphoglycer 25.6 3E+02 0.01 25.2 9.0 53 136-194 462-516 (529)
81 3k5p_A D-3-phosphoglycerate de 25.0 2E+02 0.0068 25.9 7.5 57 117-174 333-389 (416)
82 2r2v_A GCN4 leucine zipper; co 24.8 77 0.0026 18.6 3.0 18 73-90 3-20 (34)
83 2bni_A General control protein 24.4 53 0.0018 19.3 2.3 19 73-91 3-21 (34)
84 1uo4_A General control protein 24.0 55 0.0019 19.3 2.3 19 73-91 3-21 (34)
85 2wuj_A Septum site-determining 22.9 98 0.0033 19.9 3.7 29 63-91 26-54 (57)
86 1p3q_Q VPS9P, vacuolar protein 22.6 69 0.0024 20.8 2.8 26 31-56 3-28 (54)
87 3p96_A Phosphoserine phosphata 21.4 3.9E+02 0.013 23.0 9.0 75 128-206 102-176 (415)
88 2dtj_A Aspartokinase; protein- 20.4 2.9E+02 0.01 21.1 8.7 60 128-197 96-157 (178)
89 3k29_A Putative uncharacterize 20.3 2.6E+02 0.009 22.2 6.4 56 29-90 41-97 (169)
90 2re1_A Aspartokinase, alpha an 20.3 2.4E+02 0.0082 21.3 6.2 35 128-162 26-60 (167)
91 3v86_A De novo design helix; c 20.2 87 0.003 17.0 2.4 16 72-87 1-16 (27)
92 2re1_A Aspartokinase, alpha an 20.2 2.9E+02 0.0098 20.9 9.0 42 129-172 105-148 (167)
No 1
>1nlw_A MAD protein, MAX dimerizer; transcription factor, DNA, BHLHZ, transcription/DNA complex; 2.00A {Homo sapiens} SCOP: a.38.1.1
Probab=99.66 E-value=4e-16 Score=113.54 Aligned_cols=68 Identities=25% Similarity=0.331 Sum_probs=62.8
Q ss_pred hhhhhhHHHHHHHHHHHHHHHHHHhcCCCCCCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 027547 25 TKIERKTIEKNRRDQMKNLYSTLKSLLPNQPSKEELSLPDQVDEAINYIKMLETKLKECKKRKESLQG 92 (222)
Q Consensus 25 ~~~~h~~~ER~RR~~mn~~~~~LrsLlP~~~~~~k~si~~iL~~ai~YIk~Lq~~v~~L~~~~~~l~~ 92 (222)
+|..||..||+||..||++|..|+++||......|.|...||..|++||++|+++.+.|..+++.|..
T Consensus 1 ~R~~HN~~ER~RR~~lk~~f~~Lr~~vP~~~~~~k~sk~~iL~kA~~yI~~L~~~~~~l~~e~~~L~~ 68 (80)
T 1nlw_A 1 SRSTHNEMEKNRRAHLRLSLEKLKGLVPLGPDSSRHTTLSLLTKAKLHIKKLEDSDRKAVHQIDQLQR 68 (80)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHSSCCCSSSCCCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CcchHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 37899999999999999999999999999887888899999999999999999999999998877654
No 2
>1nkp_A C-MYC, MYC proto-oncogene protein; transcription, DNA, BHLHZ, heterodimer, transcription/DNA complex; 1.80A {Homo sapiens} SCOP: a.38.1.1
Probab=99.62 E-value=5.1e-16 Score=114.87 Aligned_cols=70 Identities=16% Similarity=0.307 Sum_probs=61.8
Q ss_pred CCchhhhhhHHHHHHHHHHHHHHHHHHhcCCCCCCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 027547 22 SSPTKIERKTIEKNRRDQMKNLYSTLKSLLPNQPSKEELSLPDQVDEAINYIKMLETKLKECKKRKESLQ 91 (222)
Q Consensus 22 ~~~~~~~h~~~ER~RR~~mn~~~~~LrsLlP~~~~~~k~si~~iL~~ai~YIk~Lq~~v~~L~~~~~~l~ 91 (222)
+..+|..||..||+||..||+.|..|+++||......|.|++.||..||+||+.|+++.+.+..+++.|.
T Consensus 3 d~~~R~~Hn~~ER~RR~~ln~~f~~Lr~~vP~~~~~~K~sK~~iL~~A~~YI~~L~~~~~~l~~~~~~L~ 72 (88)
T 1nkp_A 3 MNVKRRTHNVLERQRRNELKRSFFALRDQIPELENNEKAPKVVILKKATAYILSVQAEEQKLISEEDLLR 72 (88)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHTTCGGGTTCTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ChhhhhhhhHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4467899999999999999999999999999987667888888899999999999999988877665544
No 3
>1am9_A Srebp-1A, protein (sterol regulatory element binding protein 1A); basic-helix-loop- helix-leucine zipper, transcription factor; HET: DNA; 2.30A {Homo sapiens} SCOP: a.38.1.1 PDB: 1ukl_C
Probab=99.62 E-value=5.7e-16 Score=113.14 Aligned_cols=67 Identities=24% Similarity=0.370 Sum_probs=59.0
Q ss_pred chhhhhhHHHHHHHHHHHHHHHHHHhcCCCCCCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 027547 24 PTKIERKTIEKNRRDQMKNLYSTLKSLLPNQPSKEELSLPDQVDEAINYIKMLETKLKECKKRKESLQG 92 (222)
Q Consensus 24 ~~~~~h~~~ER~RR~~mn~~~~~LrsLlP~~~~~~k~si~~iL~~ai~YIk~Lq~~v~~L~~~~~~l~~ 92 (222)
.+|..|+.+||+||.+||+.|..|++|||... .|.++++||.+||+||+.|+.+++.|+.+.+.|..
T Consensus 5 ~rr~~H~~~ErrRR~~in~~f~~L~~lvP~~~--~k~~Ka~IL~~Ai~YI~~Lq~~~~~L~~e~~~L~~ 71 (82)
T 1am9_A 5 EKRTAHNAIEKRYRSSINDKIIELKDLVVGTE--AKLNKSAVLRKAIDYIRFLQHSNQKLKQENLSLRT 71 (82)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHTCSS--CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHhhhhHHHHHHHHHHHHHHHHHHhccCCC--CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 46889999999999999999999999999862 34455666999999999999999999999887765
No 4
>1hlo_A Protein (transcription factor MAX); transcriptional regulation, DNA binding, complex (transcription factor MAX/DNA), transcription/DNA complex; HET: DNA; 2.80A {Homo sapiens} SCOP: a.38.1.1
Probab=99.60 E-value=1.7e-15 Score=110.00 Aligned_cols=70 Identities=21% Similarity=0.448 Sum_probs=62.8
Q ss_pred CCchhhhhhHHHHHHHHHHHHHHHHHHhcCCCCCCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 027547 22 SSPTKIERKTIEKNRRDQMKNLYSTLKSLLPNQPSKEELSLPDQVDEAINYIKMLETKLKECKKRKESLQG 92 (222)
Q Consensus 22 ~~~~~~~h~~~ER~RR~~mn~~~~~LrsLlP~~~~~~k~si~~iL~~ai~YIk~Lq~~v~~L~~~~~~l~~ 92 (222)
...+|..|+..||+||..||+.|..|+++||.... .|.|+++||..||+||+.|++++++|+.+++.|..
T Consensus 9 ~~~~R~~hn~~Er~RR~~in~~f~~Lr~lvP~~~~-~k~sK~~iL~~Ai~YI~~L~~~~~~L~~e~~~L~~ 78 (80)
T 1hlo_A 9 DADKRAHHNALERKRRDHIKDSFHSLRDSVPSLQG-EKASRAQILDKATEYIQYMRRKNHTHQQDIDDLKR 78 (80)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHSGGGTT-SCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHH
T ss_pred hHHHHHHhhHHHHHHHHHHHHHHHHHHHHCcCCCC-CCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 34688999999999999999999999999998653 46888888999999999999999999999987753
No 5
>1nkp_B MAX protein, MYC proto-oncogene protein; transcription, DNA, BHLHZ, heterodimer, transcription/DNA complex; 1.80A {Homo sapiens} SCOP: a.38.1.1 PDB: 1an2_A* 1r05_A 1nlw_B
Probab=99.60 E-value=3e-15 Score=109.34 Aligned_cols=67 Identities=22% Similarity=0.456 Sum_probs=59.7
Q ss_pred hhhhhhHHHHHHHHHHHHHHHHHHhcCCCCCCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 027547 25 TKIERKTIEKNRRDQMKNLYSTLKSLLPNQPSKEELSLPDQVDEAINYIKMLETKLKECKKRKESLQG 92 (222)
Q Consensus 25 ~~~~h~~~ER~RR~~mn~~~~~LrsLlP~~~~~~k~si~~iL~~ai~YIk~Lq~~v~~L~~~~~~l~~ 92 (222)
+|..||..||+||..||+.|..|+++||... ..|.|+++||..||+||+.|+++++.|+.+++.|..
T Consensus 2 rR~~hn~~Er~RR~~in~~f~~Lr~lvP~~~-~~k~sK~~iL~~Ai~YI~~L~~~~~~l~~e~~~L~~ 68 (83)
T 1nkp_B 2 KRAHHNALERKRRDHIKDSFHSLRDSVPSLQ-GEKASRAQILDKATEYIQYMRRKNHTHQQDIDDLKR 68 (83)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHTTSGGGT-TSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhHhhhHHHHHHHHHHHHHHHHHHHCCCCC-CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6889999999999999999999999999864 356788888999999999999999999988877654
No 6
>1a0a_A BHLH, protein (phosphate system positive regulatory protein PHO4); transcription factor, basic helix loop helix; HET: DNA; 2.80A {Saccharomyces cerevisiae} SCOP: a.38.1.1
Probab=99.54 E-value=1.4e-15 Score=105.82 Aligned_cols=56 Identities=25% Similarity=0.344 Sum_probs=49.5
Q ss_pred hhhhhhHHHHHHHHHHHHHHHHHHhcCCCCCC----CCCCChhHHHHHHHHHHHHHHHHH
Q 027547 25 TKIERKTIEKNRRDQMKNLYSTLKSLLPNQPS----KEELSLPDQVDEAINYIKMLETKL 80 (222)
Q Consensus 25 ~~~~h~~~ER~RR~~mn~~~~~LrsLlP~~~~----~~k~si~~iL~~ai~YIk~Lq~~v 80 (222)
+|.+|+.+||+||.+||..|..|++|||...+ ..|.|+++||+.||+||++||+++
T Consensus 2 kr~~H~~aEr~RR~rIn~~~~~L~~LlP~~~~~~~~~~k~sKa~iL~~Ai~YIk~Lq~~~ 61 (63)
T 1a0a_A 2 KRESHKHAEQARRNRLAVALHELASLIPAEWKQQNVSAAPSKATTVEAACRYIRHLQQNG 61 (63)
T ss_dssp CTTGGGGGTHHHHHHHHHHHHHHHHTSCHHHHTSSCCCCSCTTHHHHHHHHHHHHHHTCS
T ss_pred cccchhHHHHHHHHHHHHHHHHHHHHCCCcccccccCCcccHHHHHHHHHHHHHHHHHHh
Confidence 57899999999999999999999999997643 347777888999999999999765
No 7
>3u5v_A Protein MAX, transcription factor E2-alpha chimer; basic helix-loop-helix (BHLH); 1.70A {Mus musculus} PDB: 2ql2_A*
Probab=99.53 E-value=2.2e-15 Score=108.56 Aligned_cols=62 Identities=15% Similarity=0.275 Sum_probs=50.6
Q ss_pred CchhhhhhHHHHHHHHHHHHHHHHHHhcCCCCCCCCCC-ChhHHHHHHHHHHHHHHHHHHHHH
Q 027547 23 SPTKIERKTIEKNRRDQMKNLYSTLKSLLPNQPSKEEL-SLPDQVDEAINYIKMLETKLKECK 84 (222)
Q Consensus 23 ~~~~~~h~~~ER~RR~~mn~~~~~LrsLlP~~~~~~k~-si~~iL~~ai~YIk~Lq~~v~~L~ 84 (222)
..+|..||..||+||..||+.|..||.+||...+.+|. |+.+||..||+||+.||+++++++
T Consensus 3 ~~rR~~hN~~ER~Rr~~IN~~f~~Lr~~vP~~~~~~K~~sK~~IL~~AieYI~~Lq~~l~e~~ 65 (76)
T 3u5v_A 3 ADKRAHHNALERKRRRDINEAFRELGRMCQMHLKSDKAQTKLLILQQAVQVILGLEQQVRERN 65 (76)
T ss_dssp ------CCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHCC
T ss_pred hhHHhhchHHHhhhHHHHHHHHHHHHHHcCCCCCccccccHHHHHHHHHHHHHHHHHHHHHHh
Confidence 46789999999999999999999999999965455666 788889999999999999998765
No 8
>1an4_A Protein (upstream stimulatory factor); protein-DNA complex, double helix, overhanging base, transcription/DNA complex; HET: DNA; 2.90A {Homo sapiens} SCOP: a.38.1.1
Probab=99.47 E-value=1.2e-14 Score=101.42 Aligned_cols=58 Identities=21% Similarity=0.392 Sum_probs=48.8
Q ss_pred CchhhhhhHHHHHHHHHHHHHHHHHHhcCCCCCCC---CCCChhHHHHHHHHHHHHHHHHH
Q 027547 23 SPTKIERKTIEKNRRDQMKNLYSTLKSLLPNQPSK---EELSLPDQVDEAINYIKMLETKL 80 (222)
Q Consensus 23 ~~~~~~h~~~ER~RR~~mn~~~~~LrsLlP~~~~~---~k~si~~iL~~ai~YIk~Lq~~v 80 (222)
..++..|+.+||+||.+||+.|..|++|||..... .|.++++||..||+||++||++.
T Consensus 3 ~~rr~~H~~~Er~RR~~in~~~~~L~~lvP~~~~~~~~~k~~Ka~IL~~ai~YI~~Lq~~~ 63 (65)
T 1an4_A 3 EKRRAQHNEVERRRRDKINNWIVQLSKIIPDSSMESTKSGQSKGGILSKASDYIQELRQSN 63 (65)
T ss_dssp CCCCCSSHHHHHHHHHHHHHHHHHHHHHSCCCCCCSSTTCCCTTTTTTTTHHHHHHHHTTT
T ss_pred HHHHHhhchHHHHHHHHHHHHHHHHHHHCcCcccccccCCCCHHHHHHHHHHHHHHHHHHh
Confidence 35788999999999999999999999999987632 24455555999999999999764
No 9
>4ati_A MITF, microphthalmia-associated transcription factor; DNA-binding protein-DNA complex, melanoma; 2.60A {Mus musculus} PDB: 4atk_A
Probab=99.47 E-value=8.5e-14 Score=108.14 Aligned_cols=65 Identities=18% Similarity=0.323 Sum_probs=52.1
Q ss_pred CchhhhhhHHHHHHHHHHHHHHHHHHhcCCCCCCC-CCCChhHHHHHHHHHHHHHHHHHHHHHHHH
Q 027547 23 SPTKIERKTIEKNRRDQMKNLYSTLKSLLPNQPSK-EELSLPDQVDEAINYIKMLETKLKECKKRK 87 (222)
Q Consensus 23 ~~~~~~h~~~ER~RR~~mn~~~~~LrsLlP~~~~~-~k~si~~iL~~ai~YIk~Lq~~v~~L~~~~ 87 (222)
..++..|+.+||+||.+||+.|..|++|||...+. .|.++++||..||+||+.||++++.|+...
T Consensus 25 ~~kr~~Hn~~ERrRR~~In~~~~~L~~lvP~~~~~~~k~~Ka~IL~~aieYIk~Lq~~~~~l~~~~ 90 (118)
T 4ati_A 25 RQKKDNHNLIERRRRFNINDRIKELGTLIPKSNDPDMRWNKGTILKASVDYIRKLQREQQRAKDLE 90 (118)
T ss_dssp ------CHHHHHHHHHHHHHHHHHHHHHSCCC----CCCCHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred hhhhhhhhHHHHHHHHHHHHHHHHHHHHHhhccCccccCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35788999999999999999999999999988653 477888889999999999999999998753
No 10
>2ql2_B Neurod1, neurogenic differentiation factor 1; basic-helix-loop-helix; HET: DNA; 2.50A {Mus musculus}
Probab=99.46 E-value=1.1e-13 Score=95.27 Aligned_cols=58 Identities=22% Similarity=0.357 Sum_probs=54.1
Q ss_pred chhhhhhHHHHHHHHHHHHHHHHHHhcCCCCCCCCCCChhHHHHHHHHHHHHHHHHHH
Q 027547 24 PTKIERKTIEKNRRDQMKNLYSTLKSLLPNQPSKEELSLPDQVDEAINYIKMLETKLK 81 (222)
Q Consensus 24 ~~~~~h~~~ER~RR~~mn~~~~~LrsLlP~~~~~~k~si~~iL~~ai~YIk~Lq~~v~ 81 (222)
++|..||..||+|+..||+.|+.||.+||......|.|+.+||..||+||..|++.++
T Consensus 1 ~rR~~~N~rER~R~~~iN~af~~LR~~lP~~~~~~klSKi~tLr~Ai~YI~~L~~~L~ 58 (60)
T 2ql2_B 1 SRRMKANARERNRMHGLNAALDNLRKVVPCYSKTQKLSKIETLRLAKNYIWALSEILR 58 (60)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHTSSSCCSSSCCCHHHHHHHHHHHHHHHHHHTT
T ss_pred CccchhhHHHHHHHHHHHHHHHHHHHHccCCCCcCcCCHHHHHHHHHHHHHHHHHHHh
Confidence 4688999999999999999999999999998888899999999999999999998753
No 11
>4h10_B Circadian locomoter output cycles protein kaput; BHLH, circadian transcription, transcription-DNA complex; 2.40A {Homo sapiens}
Probab=99.42 E-value=2.8e-13 Score=96.22 Aligned_cols=61 Identities=21% Similarity=0.397 Sum_probs=51.1
Q ss_pred CCchhhhhhHHHHHHHHHHHHHHHHHHhcCCCCCCCCCCChhHHHHHHHHHHHHHHHHHHHHH
Q 027547 22 SSPTKIERKTIEKNRRDQMKNLYSTLKSLLPNQPSKEELSLPDQVDEAINYIKMLETKLKECK 84 (222)
Q Consensus 22 ~~~~~~~h~~~ER~RR~~mn~~~~~LrsLlP~~~~~~k~si~~iL~~ai~YIk~Lq~~v~~L~ 84 (222)
+..+|.+|+.+||+||.+||+.|..|++|||... .|.++++||..||+||+.||+.+.=|+
T Consensus 5 ~~~kR~~Hn~iErrRRd~IN~~i~eL~~LvP~~~--~K~dK~sIL~~aI~yik~Lq~~~~~~~ 65 (71)
T 4h10_B 5 DKAKRVSRNKSEKKRRDQFNVLIKELGSMLPGNA--RKMDKSTVLQKSIDFLRKHKEITAWLE 65 (71)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHTTSSSCC--SCCCHHHHHHHHHHHHHHHHHHHHHTC
T ss_pred hhHHhhhhhHHHhhHHHHHHHHHHHHHHhCCCCC--CCCcHHHHHHHHHHHHHHHHHhhhHHH
Confidence 4568999999999999999999999999999643 244445559999999999999886554
No 12
>1mdy_A Protein (MYOD BHLH domain); protein-DNA complex, transcription/DNA complex; HET: DNA; 2.80A {Mus musculus} SCOP: a.38.1.1 PDB: 1mdy_B*
Probab=99.37 E-value=4.7e-13 Score=94.37 Aligned_cols=58 Identities=22% Similarity=0.366 Sum_probs=52.6
Q ss_pred CCchhhhhhHHHHHHHHHHHHHHHHHHhcCCCCCCCCCCChhHHHHHHHHHHHHHHHHH
Q 027547 22 SSPTKIERKTIEKNRRDQMKNLYSTLKSLLPNQPSKEELSLPDQVDEAINYIKMLETKL 80 (222)
Q Consensus 22 ~~~~~~~h~~~ER~RR~~mn~~~~~LrsLlP~~~~~~k~si~~iL~~ai~YIk~Lq~~v 80 (222)
...+|..||..||+|+..||+.|..||.+||..+ ..|.|+.+||..||+||..|++.+
T Consensus 9 ~~~rR~~aN~rER~R~~~iN~af~~LR~~iP~~~-~~KlSKi~tLr~Ai~YI~~L~~~L 66 (68)
T 1mdy_A 9 NADRRKAATMRERRRLSKVNEAFETLKRSTSSNP-NQRLPKVEILRNAIRYIEGLQALL 66 (68)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCSCT-TSCCCHHHHHHHHHHHHHHHHHTT
T ss_pred chhhhhHhhHHHHHHHHHHHHHHHHHHHhcCCCC-CCCCCHHHHHHHHHHHHHHHHHHH
Confidence 3468889999999999999999999999999765 569999999999999999999765
No 13
>4h10_A ARYL hydrocarbon receptor nuclear translocator-LI 1; BHLH, circadian transcription, transcription-DNA complex; 2.40A {Homo sapiens}
Probab=99.32 E-value=3.8e-13 Score=96.07 Aligned_cols=56 Identities=27% Similarity=0.371 Sum_probs=46.0
Q ss_pred CchhhhhhHHHHHHHHHHHHHHHHHHhcCCCCC-CCCCCChhHHHHHHHHHHHHHHH
Q 027547 23 SPTKIERKTIEKNRRDQMKNLYSTLKSLLPNQP-SKEELSLPDQVDEAINYIKMLET 78 (222)
Q Consensus 23 ~~~~~~h~~~ER~RR~~mn~~~~~LrsLlP~~~-~~~k~si~~iL~~ai~YIk~Lq~ 78 (222)
..++..|+.+||+||++||+.|..|++|||... ...|.++++||..||+||+.|+.
T Consensus 7 ~~rR~~H~~~ERrRR~rIN~~l~eL~~LvP~~~~~~~KldKasIL~~tV~ylk~l~~ 63 (73)
T 4h10_A 7 KNAREAHSQIEKRRRDKMNSFIDELASLVPTCNAMSRKLDKLTVLRMAVQHMKTLRG 63 (73)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHSHHHHTCSSCCCHHHHHHHHHHHHHHHSC
T ss_pred HHHHHhcchHHHHHHHHHHHHHHHHHHHccccccccccccHHHHHHHHHHHHHHHhc
Confidence 457899999999999999999999999999752 12344445559999999999873
No 14
>2lfh_A DNA-binding protein inhibitor ID-3; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Homo sapiens}
Probab=99.05 E-value=4.3e-11 Score=83.80 Aligned_cols=50 Identities=28% Similarity=0.420 Sum_probs=46.6
Q ss_pred hhHHHHHHHHHHHHHHHHHHhcCCCCCCCCCCChhHHHHHHHHHHHHHHH
Q 027547 29 RKTIEKNRRDQMKNLYSTLKSLLPNQPSKEELSLPDQVDEAINYIKMLET 78 (222)
Q Consensus 29 h~~~ER~RR~~mn~~~~~LrsLlP~~~~~~k~si~~iL~~ai~YIk~Lq~ 78 (222)
-+..||+|+..||+.|+.||.+||..+...|.|+.+||..||+||..||.
T Consensus 18 a~erER~Rm~~lN~aF~~LR~~VP~~p~~kKLSKiEtLr~Ai~YI~~Lq~ 67 (68)
T 2lfh_A 18 AAEEPLSLLDDMNHCYSRLRELVPGVPRGTQLSQVEILQRVIDYILDLQV 67 (68)
T ss_dssp CBCCCSCSSSHHHHHHHHHHHHCCCCCTTCCCCHHHHHHHHHHHHHHHHC
T ss_pred ccHHHHHHHHHHHHHHHHHHHHCCCCCCCCCccHHHHHHHHHHHHHHHHc
Confidence 35679999999999999999999999888899999999999999999984
No 15
>4f3l_A Mclock, circadian locomoter output cycles protein kaput; BHLH, PAS, circadian rhythm proteins, transcription-activato; 2.27A {Mus musculus}
Probab=98.75 E-value=4.7e-09 Score=94.26 Aligned_cols=55 Identities=25% Similarity=0.512 Sum_probs=39.4
Q ss_pred CCchhhhhhHHHHHHHHHHHHHHHHHHhcCC-CCCCCCCCChhHHHHHHHHHHHHHHHH
Q 027547 22 SSPTKIERKTIEKNRRDQMKNLYSTLKSLLP-NQPSKEELSLPDQVDEAINYIKMLETK 79 (222)
Q Consensus 22 ~~~~~~~h~~~ER~RR~~mn~~~~~LrsLlP-~~~~~~k~si~~iL~~ai~YIk~Lq~~ 79 (222)
...+|..|+.+||+||++||..|..|++||| ...+.||++| |..||.||+.|+..
T Consensus 9 ~~~~~~~~~~~e~~rr~~~n~~~~~l~~~~p~~~~~~dk~~i---l~~~~~~~~~~~~~ 64 (361)
T 4f3l_A 9 DKAKRVSRNKSEKKRRDQFNVLIKELGSMLPGNARKMDKSTV---LQKSIDFLRKHKET 64 (361)
T ss_dssp ----------CHHHHHHHHHHHHHHHHHTCCSSSCCCCHHHH---HHHHHHHHHHHHHH
T ss_pred cchhhhhhhHHHHHHHHHHHHHHHHHHHhCCCCCCCcCHHHH---HHHHHHHHHHHHhh
Confidence 4567899999999999999999999999999 3345666666 99999999999864
No 16
>4aya_A DNA-binding protein inhibitor ID-2; cell cycle; 2.10A {Homo sapiens}
Probab=98.67 E-value=4.2e-08 Score=73.23 Aligned_cols=52 Identities=27% Similarity=0.393 Sum_probs=46.8
Q ss_pred HHHHHHHHHHHHHHHHHHhcCCCCCCCCCCChhHHHHHHHHHHHHHHHHHHH
Q 027547 31 TIEKNRRDQMKNLYSTLKSLLPNQPSKEELSLPDQVDEAINYIKMLETKLKE 82 (222)
Q Consensus 31 ~~ER~RR~~mn~~~~~LrsLlP~~~~~~k~si~~iL~~ai~YIk~Lq~~v~~ 82 (222)
..||.|-..||+.|..||.+||......|.|+.++|.-||+||..|++-+++
T Consensus 31 ~~~r~Rm~~lN~AF~~LR~~vP~~p~~kKLSKIETLRlAi~YI~~Lq~~L~~ 82 (97)
T 4aya_A 31 DDPMSLLYNMNDCYSKLKELVPSIPQNKKVSKMEILQHVIDYILDLQIALDS 82 (97)
T ss_dssp CCHHHHHHHHHHHHHHHHHHCTTSCSSSCCCHHHHHHHHHHHHHHHHHHHHT
T ss_pred ccHHHHHHHHHHHHHHHHHHCCCCCCCCcccHHHHHHHHHHHHHHHHHHHhc
Confidence 3468899999999999999999988888999999999999999999987643
No 17
>4f3l_B BMAL1B; BHLH, PAS, circadian rhythm proteins, transcription-activato; 2.27A {Mus musculus}
Probab=98.57 E-value=3e-08 Score=90.02 Aligned_cols=54 Identities=28% Similarity=0.445 Sum_probs=47.5
Q ss_pred CchhhhhhHHHHHHHHHHHHHHHHHHhcCC----CCCCCCCCChhHHHHHHHHHHHHHHHH
Q 027547 23 SPTKIERKTIEKNRRDQMKNLYSTLKSLLP----NQPSKEELSLPDQVDEAINYIKMLETK 79 (222)
Q Consensus 23 ~~~~~~h~~~ER~RR~~mn~~~~~LrsLlP----~~~~~~k~si~~iL~~ai~YIk~Lq~~ 79 (222)
..+|.+|+.+||+||.+||..|..|++||| ...+.||++| |..||.||+.|+..
T Consensus 11 ~~~~~~~~~~ek~rR~~~n~~~~~L~~l~p~~~~~~~k~dk~~i---l~~~~~~l~~~~~~ 68 (387)
T 4f3l_B 11 KNAREAHSQIEKRRRDKMNSFIDELASLVPTCNAMSRKLDKLTV---LRMAVQHMKTLRGA 68 (387)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHCSSCCCHHHH---HHHHHHHHHHHHCC
T ss_pred hhhcccccchhhcchHHHHHHHHHHHHhcCCCCccccccCHHHH---HHHHHHHHHHhhcc
Confidence 457899999999999999999999999999 4566777777 99999999999843
No 18
>4ath_A MITF, microphthalmia-associated transcription factor; DNA binding protein, melanoma; HET: MSE; 1.95A {Mus musculus}
Probab=98.31 E-value=2.2e-06 Score=62.18 Aligned_cols=52 Identities=15% Similarity=0.318 Sum_probs=44.7
Q ss_pred HHHHHHHHHHHHhcCCCC-CCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 027547 37 RDQMKNLYSTLKSLLPNQ-PSKEELSLPDQVDEAINYIKMLETKLKECKKRKE 88 (222)
Q Consensus 37 R~~mn~~~~~LrsLlP~~-~~~~k~si~~iL~~ai~YIk~Lq~~v~~L~~~~~ 88 (222)
|..||+.+..|..|||.. .+..|.++..||..|++||+.||+..+.+.+...
T Consensus 4 R~nIN~~I~EL~~LiP~~~~~~~k~nKg~IL~ksvdYI~~Lq~e~~r~~e~e~ 56 (83)
T 4ath_A 4 RFNINDRIKELGTLIPKSNDPDMRWNKGTILKASVDYIRKLQREQQRAKDLEN 56 (83)
T ss_dssp HHHHHHHHHHHHHHSCCCCCTTCCCSHHHHHHHHHHHHHHHHHTHHHHHHHHH
T ss_pred hhhHHHhhhhhhccCCCCCCcccCcchHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 778999999999999985 3556888999999999999999998887776543
No 19
>1zpv_A ACT domain protein; structural genomics, PSI, protein structure INIT midwest center for structural genomics, MCSG, unknown funct; 1.90A {Streptococcus pneumoniae} SCOP: d.58.18.7
Probab=97.50 E-value=0.0014 Score=46.65 Aligned_cols=81 Identities=10% Similarity=0.073 Sum_probs=64.1
Q ss_pred eEEEEEEcCCCCChHHHHHHHHHhCCceEEEEEEEEeCCEEEEEEEEEeccCccccCHHHHHHHHHHHHhcccccccccC
Q 027547 128 LEVILTSGVDDQFIFYEVIRILHQDGAEILNAKFSVVGNTIFHVIHAEIRDSMFGFGAAKISERLKGFVSGCASEGEMQL 207 (222)
Q Consensus 128 v~V~v~~~~~~~~~L~~vl~~Le~lgL~V~~a~~s~~~~~~~~ti~~kv~~~~~~~~~~~l~~aL~~~I~~~~~~~~~~~ 207 (222)
+.+.|.| .++||++.+|..+|-+.|..|.+++....++.+...+.+.+.+ ....+.|.++|.++-...-....++-
T Consensus 6 ~~l~v~~-~DrpGila~vt~~la~~~~NI~~i~~~~~~~~~~~~i~v~~~~---~~~l~~l~~~L~~~~~~~~~~~~~~~ 81 (91)
T 1zpv_A 6 AIITVVG-KDKSGIVAGVSGKIAELGLNIDDISQTVLDEYFTMMAVVSSDE---KQDFTYLRNEFEAFGQTLNVKINIQS 81 (91)
T ss_dssp EEEEEEE-SCCTTHHHHHHHHHHHTTCEEEEEEEEEETTEEEEEEEEEESS---CCCHHHHHHHHHHHHHHHTEEEEEEE
T ss_pred EEEEEEE-CCCCCHHHHHHHHHHHcCCCEEEEEeEEEcCEEEEEEEEEeCC---CCCHHHHHHHHHHHHHHcCCEEEEee
Confidence 4566666 5899999999999999999999999998888777777777665 24789999999988776666666654
Q ss_pred CCCCC
Q 027547 208 PELWD 212 (222)
Q Consensus 208 ~~~~~ 212 (222)
-++|+
T Consensus 82 ~~if~ 86 (91)
T 1zpv_A 82 AAIFE 86 (91)
T ss_dssp GGGTC
T ss_pred HHHHH
Confidence 45554
No 20
>1u8s_A Glycine cleavage system transcriptional repressor, putative; structural genomics, protein structure initiative (PSI), domain swapping; 2.45A {Vibrio cholerae} SCOP: d.58.18.5 d.58.18.5
Probab=95.95 E-value=0.059 Score=43.51 Aligned_cols=66 Identities=17% Similarity=0.261 Sum_probs=53.0
Q ss_pred eEEEEEEcCCCCChHHHHHHHHHhCCceEEEEEEEEeCCEEEEEEEEEeccCccccCHHHHHHHHHHHHhc
Q 027547 128 LEVILTSGVDDQFIFYEVIRILHQDGAEILNAKFSVVGNTIFHVIHAEIRDSMFGFGAAKISERLKGFVSG 198 (222)
Q Consensus 128 v~V~v~~~~~~~~~L~~vl~~Le~lgL~V~~a~~s~~~~~~~~ti~~kv~~~~~~~~~~~l~~aL~~~I~~ 198 (222)
+.|.|.| +++||++..|..+|.++|++|+.++..+..+.++..+.+.... ...+.|.++|.++...
T Consensus 7 ~~itv~~-~DrpGiva~vt~~La~~g~NI~d~~~~~~~~~f~~~~~v~~~~----~~~~~l~~~L~~~~~~ 72 (192)
T 1u8s_A 7 LVITAVG-TDRPGICNEVVRLVTQAGCNIIDSRIAMFGKEFTLLMLISGSP----SNITRVETTLPLLGQQ 72 (192)
T ss_dssp EEEEEEE-ECCTTHHHHHHHHHHHTTCEEEEEEEEEETTEEEEEEEEEECH----HHHHHHHHHHHHHHHH
T ss_pred EEEEEEc-CCCCcHHHHHHHHHHHCCCCEEeeeeeecCCceEEEEEEecCC----CCHHHHHHHHHHHHHh
Confidence 5577777 5899999999999999999999999998888877777775432 3567788888777653
No 21
>2ko1_A CTR148A, GTP pyrophosphokinase; homodimer, alpha+beta, transferase, structural genomics, PSI-2, protein structure initiative; NMR {Chlorobaculum tepidum} PDB: 3ibw_A
Probab=95.70 E-value=0.038 Score=38.33 Aligned_cols=49 Identities=4% Similarity=0.043 Sum_probs=37.8
Q ss_pred eEEEEEEcCCCCChHHHHHHHHHhCCceEEEEEEEEeCCEEEEEEEEEec
Q 027547 128 LEVILTSGVDDQFIFYEVIRILHQDGAEILNAKFSVVGNTIFHVIHAEIR 177 (222)
Q Consensus 128 v~V~v~~~~~~~~~L~~vl~~Le~lgL~V~~a~~s~~~~~~~~ti~~kv~ 177 (222)
..+.|.+ .++||.|.+|..+|.+.|+.|.+++....++.+...|.+.+.
T Consensus 6 ~~l~v~~-~Dr~G~L~~I~~~la~~~inI~~i~~~~~~~~~~~~i~v~~~ 54 (88)
T 2ko1_A 6 AGIRIVG-EDKNGMTNQITGVISKFDTNIRTIVLNAKDGIFTCNLMIFVK 54 (88)
T ss_dssp EEEEEEE-ECCTTHHHHHHHHHTTSSSCEEEEEEEECSSEEEEEEEEEES
T ss_pred EEEEEEE-ECCCcHHHHHHHHHHHCCCCeEEEEEEEcCCEEEEEEEEEEC
Confidence 3455555 489999999999999999999999998776644455555554
No 22
>1u8s_A Glycine cleavage system transcriptional repressor, putative; structural genomics, protein structure initiative (PSI), domain swapping; 2.45A {Vibrio cholerae} SCOP: d.58.18.5 d.58.18.5
Probab=95.64 E-value=0.066 Score=43.21 Aligned_cols=75 Identities=15% Similarity=0.232 Sum_probs=56.1
Q ss_pred eEEEEEEcCCCCChHHHHHHHHHhCCceEEEEEEEEeC--------CEEEEEEEEEeccCccccCHHHHHHHHHHHHhcc
Q 027547 128 LEVILTSGVDDQFIFYEVIRILHQDGAEILNAKFSVVG--------NTIFHVIHAEIRDSMFGFGAAKISERLKGFVSGC 199 (222)
Q Consensus 128 v~V~v~~~~~~~~~L~~vl~~Le~lgL~V~~a~~s~~~--------~~~~~ti~~kv~~~~~~~~~~~l~~aL~~~I~~~ 199 (222)
..|.|.| .+++|++.+|.+.|-++|++|..+...+.+ +.++..+.+.+. . ..+.+.|+++|..+....
T Consensus 94 ~~l~v~~-~D~~Gil~~v~~~l~~~~~nI~~~~~~t~~~~~~~~~~~~F~~~~~~~~~--~-~~~~~~l~~~l~~~~~~~ 169 (192)
T 1u8s_A 94 VEVYVES-DDKLGLTEKFTQFFAQRQIGMASLSAQTISKDKLHSEQNQFHIAISARVD--S-GCNLMQLQEEFDALCTAL 169 (192)
T ss_dssp EEEEEEE-SCCTTHHHHHHHHHHHTTCCEEEEEEEEEC--------CEEEEEEEEEEC--T-TSCHHHHHHHHHHHHHHH
T ss_pred EEEEEEe-CCCccHHHHHHHHHHHcCCcHHHhhhhcccCCccCCCCCEEEEEEEEeCC--C-CCCHHHHHHHHHHHHHHh
Confidence 4566666 589999999999999999999999988765 234444444332 2 468899999999888877
Q ss_pred ccccccc
Q 027547 200 ASEGEMQ 206 (222)
Q Consensus 200 ~~~~~~~ 206 (222)
-..+.++
T Consensus 170 ~~~~~~~ 176 (192)
T 1u8s_A 170 DVQGSLN 176 (192)
T ss_dssp TCEEEEE
T ss_pred CceEEEE
Confidence 6555554
No 23
>2nyi_A Unknown protein; protein structure initiative, PSI, center for eukaryotic structural genomics, CESG, structural genomics; 1.80A {Galdieria sulphuraria}
Probab=95.35 E-value=0.079 Score=43.16 Aligned_cols=71 Identities=13% Similarity=0.106 Sum_probs=53.0
Q ss_pred eeEEEEEEcCCCCChHHHHHHHHHhCCceEEEEEEEEeC------CEEEEEEEEEeccCccccCHHHHHHHHHHHHhccc
Q 027547 127 NLEVILTSGVDDQFIFYEVIRILHQDGAEILNAKFSVVG------NTIFHVIHAEIRDSMFGFGAAKISERLKGFVSGCA 200 (222)
Q Consensus 127 ~v~V~v~~~~~~~~~L~~vl~~Le~lgL~V~~a~~s~~~------~~~~~ti~~kv~~~~~~~~~~~l~~aL~~~I~~~~ 200 (222)
...|.|.| .++||++..|-..|-++|+.|..++..+.+ ++++..+...+.. ..+ +.|+++|..+....-
T Consensus 93 ~~iltv~g-~DrpGiva~Vt~~La~~g~nI~~~~~~t~~~~~~~~~~F~m~~~~~~~~---~~~-~~l~~~l~~~a~~l~ 167 (195)
T 2nyi_A 93 EYELYVEG-PDSEGIVEAVTAVLAKKGANIVELETETLPAPFAGFTLFRMGSRVAFPF---PLY-QEVVTALSRVEEEFG 167 (195)
T ss_dssp EEEEEEEE-ECCTTHHHHHHHHHHHTTCEEEEEEEEEEECSSTTCEEEEEEEEEEEEG---GGH-HHHHHHHHHHHHHHT
T ss_pred EEEEEEEe-CCCcCHHHHHHHHHHHcCCCEEEceeeecccccCCCCeEEEEEEEEcCC---Ccc-HHHHHHHHHHHHHcC
Confidence 35677777 489999999999999999999999999876 4455455544432 345 888888888777654
Q ss_pred cc
Q 027547 201 SE 202 (222)
Q Consensus 201 ~~ 202 (222)
..
T Consensus 168 ~d 169 (195)
T 2nyi_A 168 VD 169 (195)
T ss_dssp CE
T ss_pred eE
Confidence 33
No 24
>2nyi_A Unknown protein; protein structure initiative, PSI, center for eukaryotic structural genomics, CESG, structural genomics; 1.80A {Galdieria sulphuraria}
Probab=95.30 E-value=0.1 Score=42.48 Aligned_cols=49 Identities=12% Similarity=0.196 Sum_probs=41.3
Q ss_pred eEEEEEEcCCCCChHHHHHHHHHhCCceEEEEEEEEeCCEEEEEEEEEec
Q 027547 128 LEVILTSGVDDQFIFYEVIRILHQDGAEILNAKFSVVGNTIFHVIHAEIR 177 (222)
Q Consensus 128 v~V~v~~~~~~~~~L~~vl~~Le~lgL~V~~a~~s~~~~~~~~ti~~kv~ 177 (222)
+.|.|.| +++||++..|..+|.++|+.|+.++..+..+.++..+.+...
T Consensus 6 ~~ltv~~-~DrpGiva~vs~~La~~g~NI~da~q~~~~~~f~m~~~v~~~ 54 (195)
T 2nyi_A 6 FVVSVAG-SDRVGIVHDFSWALKNISANVESSRMACLGGDFAMIVLVSLN 54 (195)
T ss_dssp EEEEEEE-ECCTTHHHHHHHHHHHTTCEEEEEEEEEETTEEEEEEEEEES
T ss_pred EEEEEEe-CCCCcHHHHHHHHHHHCCCCEEEEEeEEECCeEEEEEEEEec
Confidence 5677777 589999999999999999999999999888877666666543
No 25
>3p96_A Phosphoserine phosphatase SERB; ssgcid, structural genomics, structural genomics center for infectious disease, hydrolas; 2.05A {Mycobacterium avium}
Probab=92.58 E-value=0.53 Score=41.99 Aligned_cols=76 Identities=12% Similarity=0.178 Sum_probs=58.3
Q ss_pred eEEEEEEcCCCCChHHHHHHHHHhCCceEEEEEEEEeCCEEEEEEEEEeccCccccCHHHHHHHHHHHHhccccccccc
Q 027547 128 LEVILTSGVDDQFIFYEVIRILHQDGAEILNAKFSVVGNTIFHVIHAEIRDSMFGFGAAKISERLKGFVSGCASEGEMQ 206 (222)
Q Consensus 128 v~V~v~~~~~~~~~L~~vl~~Le~lgL~V~~a~~s~~~~~~~~ti~~kv~~~~~~~~~~~l~~aL~~~I~~~~~~~~~~ 206 (222)
+.|++.| .++||+...|...|-++|.+|+.++....+++++..+.+.+... ..+.+.|.++|..+-...-....+.
T Consensus 13 ~~lt~~g-~Dr~Giv~~vs~~l~~~~~nI~d~~q~~~~~~f~~~~~~~~~~~--~~~~~~l~~~l~~~~~~~~~~~~~~ 88 (415)
T 3p96_A 13 VLITVTG-VDQPGVTATLFEVLSRHGVELLNVEQVVIRHRLTLGVLVCCPAD--VADGPALRHDVEAAIRKVGLDVSIE 88 (415)
T ss_dssp EEEEEEE-ECCTTHHHHHHHHHTTTTCEEEEEEEEEETTEEEEEEEEEECHH--HHTSHHHHHHHHHHHHHTTCEEEEE
T ss_pred EEEEEEc-CCCCCHHHHHHHHHHHCCCCEEEeeeEEECCEeEEEEEEEecCC--cCCHHHHHHHHHHHHHHcCeEEEEE
Confidence 5577777 48999999999999999999999999999998777777766442 1355788888887766554443333
No 26
>3o1l_A Formyltetrahydrofolate deformylase; structural genomics, joint center for structural genomics, J protein structure initiative; HET: MSE; 2.20A {Pseudomonas syringae PV}
Probab=90.57 E-value=2.3 Score=37.27 Aligned_cols=69 Identities=13% Similarity=0.092 Sum_probs=52.4
Q ss_pred eEEEEEEcCCCCChHHHHHHHHHhCCceEEEEEEEEe--CCEEEEEEEEEeccCccccCHHHHHHHHHHHHhcc
Q 027547 128 LEVILTSGVDDQFIFYEVIRILHQDGAEILNAKFSVV--GNTIFHVIHAEIRDSMFGFGAAKISERLKGFVSGC 199 (222)
Q Consensus 128 v~V~v~~~~~~~~~L~~vl~~Le~lgL~V~~a~~s~~--~~~~~~ti~~kv~~~~~~~~~~~l~~aL~~~I~~~ 199 (222)
.-+++.| .+++|+...|-..|-++|..|+.++.... .++++..+.+..... ..+.+.|.++|..+-..+
T Consensus 23 ~iLtv~c-~DrpGIVa~VS~~La~~g~NI~d~~q~~d~~~g~FfMr~~~~~~~~--~~~~~~L~~~l~~la~~l 93 (302)
T 3o1l_A 23 FRLVIAC-PDRVGIVAKVSNFLASHNGWITEASHHSDNLSGWFFMRHEIRADTL--PFDLDGFREAFTPIAEEF 93 (302)
T ss_dssp EEEEEEE-ECCTTHHHHHHHHHHHTTCCEEEEEEEEETTTTEEEEEEEEEGGGS--SSCHHHHHHHHHHHHHHH
T ss_pred EEEEEEC-CCCCCHHHHHHHHHHHCCCCEEEeeEEecCCCCeEEEEEEEecCCC--CCCHHHHHHHHHHHHHHh
Confidence 4577777 48999999999999999999999998875 566555454443322 367889999998776644
No 27
>3obi_A Formyltetrahydrofolate deformylase; structural genomics, joint center for structural genomics, J protein structure initiative; HET: MSE; 1.95A {Rhodopseudomonas palustris}
Probab=89.90 E-value=1.9 Score=37.47 Aligned_cols=70 Identities=16% Similarity=0.131 Sum_probs=53.3
Q ss_pred eEEEEEEcCCCCChHHHHHHHHHhCCceEEEEEEEEe--CCEEEEEEEEEeccCccccCHHHHHHHHHHHHhccc
Q 027547 128 LEVILTSGVDDQFIFYEVIRILHQDGAEILNAKFSVV--GNTIFHVIHAEIRDSMFGFGAAKISERLKGFVSGCA 200 (222)
Q Consensus 128 v~V~v~~~~~~~~~L~~vl~~Le~lgL~V~~a~~s~~--~~~~~~ti~~kv~~~~~~~~~~~l~~aL~~~I~~~~ 200 (222)
+.+++.| .+++|+...|-..|-++|..|+.++..+. .+.++..+.+.+... ..+.+.|+++|..+-..+-
T Consensus 7 ~iLtv~g-~DrpGIVa~Vs~~La~~g~NI~d~~q~~d~~~g~Ffmr~~~~~~~~--~~~~~~L~~~f~~la~~~~ 78 (288)
T 3obi_A 7 YVLTLSC-PDRAGIVSAVSTFLFENGQNILDAQQYNDTESGHFFMRVVFNAAAK--VIPLASLRTGFGVIAAKFT 78 (288)
T ss_dssp EEEEEEE-ECCTTHHHHHHHHHHHTTEEEEEEEEEEETTTTEEEEEEEEEESSC--CCCHHHHHHHHHHHHHHTT
T ss_pred EEEEEEC-CCCCCHHHHHHHHHHHCCCcEEeeeeeecCCCCceEEEEEEEcCCC--CCCHHHHHHHHHHHHHHcC
Confidence 4577777 48999999999999999999999998643 456665555555432 3678999999987766543
No 28
>3n0v_A Formyltetrahydrofolate deformylase; formyl transferase, ACT domain, structural genomics, joint C structural genomics, JCSG; HET: MSE; 2.25A {Pseudomonas putida}
Probab=89.81 E-value=2.2 Score=36.93 Aligned_cols=69 Identities=12% Similarity=-0.013 Sum_probs=52.1
Q ss_pred eEEEEEEcCCCCChHHHHHHHHHhCCceEEEEEEEEe--CCEEEEEEEEEeccCccccCHHHHHHHHHHHHhccc
Q 027547 128 LEVILTSGVDDQFIFYEVIRILHQDGAEILNAKFSVV--GNTIFHVIHAEIRDSMFGFGAAKISERLKGFVSGCA 200 (222)
Q Consensus 128 v~V~v~~~~~~~~~L~~vl~~Le~lgL~V~~a~~s~~--~~~~~~ti~~kv~~~~~~~~~~~l~~aL~~~I~~~~ 200 (222)
+.+++.| ++++|+...|-..|-++|..|+.++..+. .+.++..+.+.... ..+.+.++++|..+-..+-
T Consensus 9 ~vLtv~c-~DrpGIVa~Vs~~La~~g~NI~d~~q~~d~~~g~Ffmr~~~~~~~---~~~~~~L~~~f~~la~~l~ 79 (286)
T 3n0v_A 9 WILTADC-PSMLGTVDVVTRYLFEQRCYVTEHHSFDDRQSGRFFIRVEFRQPD---DFDEAGFRAGLAERSEAFG 79 (286)
T ss_dssp EEEEEEE-ECCTTHHHHHHHHHHHTTCEEEEEEEEEETTTTEEEEEEEEECCS---SCCHHHHHHHHHHHHGGGT
T ss_pred EEEEEEe-CCCCCHHHHHHHHHHHCCCCeeeeeeeccCCCCeeEEEEEEecCC---CCCHHHHHHHHHHHHHHcC
Confidence 4577777 48999999999999999999999998853 45555545444332 4678899999987766443
No 29
>2f1f_A Acetolactate synthase isozyme III small subunit; ferredoxin fold, ACT domain, transferase; HET: P33 1PE; 1.75A {Escherichia coli} SCOP: d.58.18.6 d.58.18.6
Probab=89.30 E-value=0.72 Score=36.94 Aligned_cols=64 Identities=16% Similarity=0.118 Sum_probs=45.7
Q ss_pred EEEEEEcCCCCChHHHHHHHHHhCCceEEEEEEEEeC--CEEEEEEEEEeccCccccCHHHHHHHHHHHHh
Q 027547 129 EVILTSGVDDQFIFYEVIRILHQDGAEILNAKFSVVG--NTIFHVIHAEIRDSMFGFGAAKISERLKGFVS 197 (222)
Q Consensus 129 ~V~v~~~~~~~~~L~~vl~~Le~lgL~V~~a~~s~~~--~~~~~ti~~kv~~~~~~~~~~~l~~aL~~~I~ 197 (222)
.+.|.. .++||.|.+|...|.+.|++|.+.++.... +....+|.+. .+ ....+.+...|.+++.
T Consensus 5 ~IsV~v-~NrpGvLarIt~lfs~rg~NI~Sl~v~~t~d~~~sriti~V~-~d---~~~leqI~kqL~Kl~d 70 (164)
T 2f1f_A 5 ILSVLL-ENESGALSRVIGLFSQRGYNIESLTVAPTDDPTLSRMTIQTV-GD---EKVLEQIEKQLHKLVD 70 (164)
T ss_dssp EEEEEE-ECCTTHHHHHHHHHHTTTCCCSEEEEEECSCSSEEEEEEEEE-SC---HHHHHHHHHHHHHSTT
T ss_pred EEEEEE-eCCCcHHHHHHHHHHHCCCCeeeceeeecCCCCEEEEEEEEe-cc---HHHHHHHHHHHcCCCC
Confidence 355555 389999999999999999999999988554 5566666665 22 1345666666666544
No 30
>2jhe_A Transcription regulator TYRR; aromatic hydrocarbons catabolism, TYRR protei nucleotide-binding, transcription regulation, activator; HET: PG4; 2.30A {Escherichia coli}
Probab=88.29 E-value=1.2 Score=34.16 Aligned_cols=35 Identities=11% Similarity=0.176 Sum_probs=31.1
Q ss_pred EEEEEEcCCCCChHHHHHHHHHhCCceEEEEEEEEe
Q 027547 129 EVILTSGVDDQFIFYEVIRILHQDGAEILNAKFSVV 164 (222)
Q Consensus 129 ~V~v~~~~~~~~~L~~vl~~Le~lgL~V~~a~~s~~ 164 (222)
.+.|.|. +++|+|.+|+++|-+.++++..+++...
T Consensus 2 ~~~v~~~-dr~g~l~~i~~~l~~~~~ni~~~~~~~~ 36 (190)
T 2jhe_A 2 RLEVFCE-DRLGLTRELLDLLVLRGIDLRGIEIDPI 36 (190)
T ss_dssp EEEEEEC-SCTTHHHHHHHHHHHTTCCEEEEEEETT
T ss_pred EEEEEEe-cCCcHHHHHHHHHHHcCCCeEEEEEecC
Confidence 4667774 8999999999999999999999999766
No 31
>2fgc_A Acetolactate synthase, small subunit; regulatory subunit, structural genomi protein structure initiative; 2.30A {Thermotoga maritima} SCOP: d.58.18.6 d.58.18.6
Probab=87.67 E-value=1.2 Score=36.66 Aligned_cols=65 Identities=14% Similarity=0.061 Sum_probs=47.1
Q ss_pred EEEEEEcCCCCChHHHHHHHHHhCCceEEEEEEEEeC--CEEEEEEEEEeccCccccCHHHHHHHHHHHHhc
Q 027547 129 EVILTSGVDDQFIFYEVIRILHQDGAEILNAKFSVVG--NTIFHVIHAEIRDSMFGFGAAKISERLKGFVSG 198 (222)
Q Consensus 129 ~V~v~~~~~~~~~L~~vl~~Le~lgL~V~~a~~s~~~--~~~~~ti~~kv~~~~~~~~~~~l~~aL~~~I~~ 198 (222)
.+.|.. .++||.|.+|...|...|++|.+.++.... +....+|.+...+ ...+.|...|.+++.-
T Consensus 31 ~LsVlV-eN~pGvLaRItglfsrRG~NI~SLtV~~ted~gisRitIvV~g~e----~~ieqL~kQL~KLidV 97 (193)
T 2fgc_A 31 LVSMLV-HNKPGVMRKVANLFARRGFNISSITVGESETPGLSRLVIMVKGDD----KTIEQIEKQAYKLVEV 97 (193)
T ss_dssp EEEEEE-ECCTTHHHHHHHHHHTTTCEEEEEEEEECSSTTEEEEEEEEEECT----THHHHHHHHHTTSTTE
T ss_pred EEEEEE-CCCChHHHHHHHHHHHCCceEEEEEeeccCCCCEEEEEEEEECCH----HHHHHHHHHhcCcCce
Confidence 345544 389999999999999999999999987543 5566777775332 3467777777765543
No 32
>2pc6_A Probable acetolactate synthase isozyme III (small; regulatory subunit, structural genomi protein structure initiative; HET: MSE; 2.50A {Nitrosomonas europaea atcc 19718} SCOP: d.58.18.6 d.58.18.6
Probab=87.41 E-value=0.71 Score=37.05 Aligned_cols=64 Identities=9% Similarity=0.050 Sum_probs=46.1
Q ss_pred EEEEEEcCCCCChHHHHHHHHHhCCceEEEEEEEEeC--CEEEEEEEEEeccCccccCHHHHHHHHHHHHh
Q 027547 129 EVILTSGVDDQFIFYEVIRILHQDGAEILNAKFSVVG--NTIFHVIHAEIRDSMFGFGAAKISERLKGFVS 197 (222)
Q Consensus 129 ~V~v~~~~~~~~~L~~vl~~Le~lgL~V~~a~~s~~~--~~~~~ti~~kv~~~~~~~~~~~l~~aL~~~I~ 197 (222)
.+.|... ++||.|.+|...|.+.|++|.+.++.... +....+|.+.-. ....+.+...|.+++.
T Consensus 6 ~IsV~ve-NrpGvL~rI~~lfs~rg~NI~Sl~v~~t~d~g~sritivV~~d----~~~leql~kQL~Kl~d 71 (165)
T 2pc6_A 6 IISLLME-NEAGALSRVAGLFSARGYNIESLSVAPTEDPTLSRMTLVTNGP----DEIVEQITKQLNKLIE 71 (165)
T ss_dssp EEEEEEE-CSTTHHHHHHHHHHHHTCCCCEEEEEECSSTTEEEEEEEEEEC----HHHHHHHHHHHHHSTT
T ss_pred EEEEEEe-CCCcHHHHHHHHHHHCCCcEEEEEEEecCCCCEEEEEEEEecc----HHHHHHHHHHhcCCCC
Confidence 4555553 89999999999999999999999987543 566677777522 1345666666666554
No 33
>3lou_A Formyltetrahydrofolate deformylase; structural genomics, JOI for structural genomics, JCSG, protein structure initiative hydrolase; HET: MSE; 1.90A {Burkholderia mallei}
Probab=86.87 E-value=3.6 Score=35.72 Aligned_cols=71 Identities=7% Similarity=0.007 Sum_probs=50.7
Q ss_pred eEEEEEEcCCCCChHHHHHHHHHhCCceEEEEEEEEe--CCEEEEEEEEEeccCccccCHHHHHHHHHHHHhcc
Q 027547 128 LEVILTSGVDDQFIFYEVIRILHQDGAEILNAKFSVV--GNTIFHVIHAEIRDSMFGFGAAKISERLKGFVSGC 199 (222)
Q Consensus 128 v~V~v~~~~~~~~~L~~vl~~Le~lgL~V~~a~~s~~--~~~~~~ti~~kv~~~~~~~~~~~l~~aL~~~I~~~ 199 (222)
..+++.| .+++|+...|-..|-++|..|+.++..+. .++++..+.+...-.....+.+.+.++|..+-..+
T Consensus 11 ~vLtv~c-~Dr~GIVa~Vs~~La~~g~NI~d~~q~~d~~~g~Ffmr~~~~~~~~~~~~~~~~L~~~f~~la~~~ 83 (292)
T 3lou_A 11 FVLTLSC-PSAAGQVAAVVGLLDRHRCYVDELTVFDDDLSARFFVRCVFHATDDADALRVDALRREFEPIAERF 83 (292)
T ss_dssp EEEEEEE-ESCSCHHHHHHHHHHHTTEEEEEEEEEEETTTTEEEEEEEEEECC----CCHHHHHHHHHHHHHHH
T ss_pred EEEEEEc-CCCCCHHHHHHHHHHHCCCCEEeeEEEecCCCCceEEEEEEEccCcccCCCHHHHHHHHHHHHHhc
Confidence 4577777 48999999999999999999999998853 45555544444430011367889999988766544
No 34
>3nrb_A Formyltetrahydrofolate deformylase; N-terminal ACT domain, structural genomics, joint center for structural genomics, JCSG; HET: MSE FLC; 2.05A {Pseudomonas putida}
Probab=85.32 E-value=4.5 Score=35.01 Aligned_cols=67 Identities=22% Similarity=0.252 Sum_probs=46.7
Q ss_pred eEEEEEEcCCCCChHHHHHHHHHhCCceEEEEEEEEe--CCEEEEEEEEEeccCccccCHHHHHHHHHHHHhcc
Q 027547 128 LEVILTSGVDDQFIFYEVIRILHQDGAEILNAKFSVV--GNTIFHVIHAEIRDSMFGFGAAKISERLKGFVSGC 199 (222)
Q Consensus 128 v~V~v~~~~~~~~~L~~vl~~Le~lgL~V~~a~~s~~--~~~~~~ti~~kv~~~~~~~~~~~l~~aL~~~I~~~ 199 (222)
+-+++.| .+++|+...|-..|-++|..|+.++..+. .+.++..+.+... . .+.+.+.++|..+-..+
T Consensus 8 ~vLtv~c-~Dr~GIVa~Vs~~La~~g~NI~d~~q~~d~~~g~Ffmr~~~~~~--~--~~~~~L~~~f~~la~~~ 76 (287)
T 3nrb_A 8 YVLSLAC-QDAPGIVSEVSTFLFNNGANIVEAEQFNDEDSSKFFMRVSVEIP--V--AGVNDFNSAFGKVVEKY 76 (287)
T ss_dssp EEEEEEE-ECCTTHHHHHHHHHHHTTCEEEEEEEEEETTTTEEEEEEEEECC--C-----CHHHHHHHHHHGGG
T ss_pred EEEEEEC-CCCCCHHHHHHHHHHHCCCCEEeeeeeecCCCCeEEEEEEEEcC--C--CCHHHHHHHHHHHHHHc
Confidence 4577777 48999999999999999999999998743 4555544444332 2 34458888887765544
No 35
>1y7p_A Hypothetical protein AF1403; structural genomics, protein structure initiative, PSI, alpha-beta-alpha sandwich; HET: RIP; 1.90A {Archaeoglobus fulgidus} SCOP: c.23.1.7 d.58.18.12
Probab=84.31 E-value=2.6 Score=35.51 Aligned_cols=61 Identities=21% Similarity=0.297 Sum_probs=40.9
Q ss_pred eEEEEEEcCCCCChHHHHHHHHHhCCceEEEEEEEEeC-----CEEEEEEEEEeccCccccCHHHHHHHHHHH
Q 027547 128 LEVILTSGVDDQFIFYEVIRILHQDGAEILNAKFSVVG-----NTIFHVIHAEIRDSMFGFGAAKISERLKGF 195 (222)
Q Consensus 128 v~V~v~~~~~~~~~L~~vl~~Le~lgL~V~~a~~s~~~-----~~~~~ti~~kv~~~~~~~~~~~l~~aL~~~ 195 (222)
+.+.|.+ .+++|+|.+|+.+|-+.+..|.+.+..... +.+..+ .++.+ . ..+++-++|+++
T Consensus 5 VtL~I~a-~DRpGLLsDIt~vLAe~kiNIltIn~~~~~kG~~ng~A~I~--IEV~d---~-~Le~LL~kLrkI 70 (223)
T 1y7p_A 5 RGLRIIA-ENKIGVLRDLTTIIAEEGGNITFAQTFLIKHGEHEGKALIY--FEIEG---G-DFEKILERVKTF 70 (223)
T ss_dssp EEEEEEE-ECCTTHHHHHHHHCC----CEEEEEEEECCSSTTTTEEEEE--EEECS---S-CHHHHHHHHHTC
T ss_pred EEEEEEE-cCCCCHHHHHHHHHHHcCCCceEEEEEccccCCcCCEEEEE--EEECC---C-CHHHHHHHHhCC
Confidence 3455555 489999999999999999999999998764 444333 66664 2 667777776643
No 36
>1gmj_A ATPase inhibitor; coiled-coil structure, P dependent oligomerization, ATP hydrolysis; 2.2A {Bos taurus} SCOP: h.4.8.1 PDB: 1ohh_H* 1hf9_A
Probab=79.95 E-value=5.2 Score=28.61 Aligned_cols=44 Identities=18% Similarity=0.300 Sum_probs=32.8
Q ss_pred HHHHHHHHHHHHhcCCCCCCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 027547 37 RDQMKNLYSTLKSLLPNQPSKEELSLPDQVDEAINYIKMLETKLKECKKRKESLQ 91 (222)
Q Consensus 37 R~~mn~~~~~LrsLlP~~~~~~k~si~~iL~~ai~YIk~Lq~~v~~L~~~~~~l~ 91 (222)
|++..+.+..||.-+ .+-|..=++-|+.|+..++..+.+...|.
T Consensus 35 rqkekEqL~~LKkkl-----------~~el~~h~~ei~~le~~i~rhk~~i~~l~ 78 (84)
T 1gmj_A 35 RARAKEQLAALKKHK-----------ENEISHHAKEIERLQKEIERHKQSIKKLK 78 (84)
T ss_dssp HHHHHHHHHHHHHHH-----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH-----------HHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 667788888888644 33377777888888888888887776664
No 37
>3luy_A Probable chorismate mutase; structural genomics, APC38059, 3-phenylp PSI-2, protein structure initiative; HET: PPY; 2.00A {Bifidobacterium adolescentis}
Probab=70.02 E-value=27 Score=30.80 Aligned_cols=60 Identities=3% Similarity=0.002 Sum_probs=48.3
Q ss_pred CCCChHHHHHHHHHhCCceEEEEEEEEeCCE-EEEEEEEEeccCccccCHHHHHHHHHHHHhcc
Q 027547 137 DDQFIFYEVIRILHQDGAEILNAKFSVVGNT-IFHVIHAEIRDSMFGFGAAKISERLKGFVSGC 199 (222)
Q Consensus 137 ~~~~~L~~vl~~Le~lgL~V~~a~~s~~~~~-~~~ti~~kv~~~~~~~~~~~l~~aL~~~I~~~ 199 (222)
++||.|+++|..|...|++.....+-...+. --|.|.+.+... .+-..++++|.++-..+
T Consensus 217 ~~pGaL~~~L~~Fa~~gINLtkIESRP~~~~~~~Y~FfiD~eg~---~~d~~v~~AL~~L~~~~ 277 (329)
T 3luy_A 217 TGPGVLANLLDVFRDAGLNMTSFISRPIKGRTGTYSFIVTLDAA---PWEERFRDALVEIAEHG 277 (329)
T ss_dssp CSTTHHHHHHHHHHHTTCCEEEEEEEEETTEEEEEEEEEEESSC---TTSHHHHHHHHHHHHTT
T ss_pred CCCCHHHHHHHHHHHCCcceEEEEeeECCCCCccEEEEEEEeCC---cCCHHHHHHHHHHHHhC
Confidence 5799999999999999999999999987665 457788877653 35567888888876654
No 38
>2oqq_A Transcription factor HY5; homodimer leucine zipper; 2.00A {Arabidopsis thaliana}
Probab=68.20 E-value=5.9 Score=24.61 Aligned_cols=22 Identities=23% Similarity=0.549 Sum_probs=19.3
Q ss_pred HHHHHHHHHHHHHHHHHHHhhc
Q 027547 71 NYIKMLETKLKECKKRKESLQG 92 (222)
Q Consensus 71 ~YIk~Lq~~v~~L~~~~~~l~~ 92 (222)
.|+-+|+.++++|+.+..+|+.
T Consensus 3 aYl~eLE~r~k~le~~naeLEe 24 (42)
T 2oqq_A 3 AYLSELENRVKDLENKNSELEE 24 (42)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHHHHH
Confidence 5999999999999998888875
No 39
>3he4_B Synzip5; heterodimeric coiled-coil, de novo protein; 2.46A {Artificial gene}
Probab=67.11 E-value=7.3 Score=23.85 Aligned_cols=27 Identities=44% Similarity=0.456 Sum_probs=22.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 027547 66 VDEAINYIKMLETKLKECKKRKESLQG 92 (222)
Q Consensus 66 L~~ai~YIk~Lq~~v~~L~~~~~~l~~ 92 (222)
+.+--+||++|+++-.+|+.-++.|..
T Consensus 5 vkelknyiqeleernaelknlkehlkf 31 (46)
T 3he4_B 5 VKELKNYIQELEERNAELKNLKEHLKF 31 (46)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhHHHHhHHHHHHH
Confidence 677889999999999999887776553
No 40
>2f06_A Conserved hypothetical protein; structural genomics hypothetical protein, PSI, protein struc initiative; HET: MSE HIS; 2.10A {Bacteroides thetaiotaomicron} SCOP: d.58.18.11 d.58.18.11
Probab=65.95 E-value=38 Score=25.12 Aligned_cols=51 Identities=22% Similarity=0.074 Sum_probs=36.3
Q ss_pred CCCCChHHHHHHHHHhCCceEEEEEEEEeCCEEEEEEEEEeccCccccCHHHHHHHHHH
Q 027547 136 VDDQFIFYEVIRILHQDGAEILNAKFSVVGNTIFHVIHAEIRDSMFGFGAAKISERLKG 194 (222)
Q Consensus 136 ~~~~~~L~~vl~~Le~lgL~V~~a~~s~~~~~~~~ti~~kv~~~~~~~~~~~l~~aL~~ 194 (222)
+++||.+.+++++|.+.|+.|...-.+..+.+....|.. . +.+...++|++
T Consensus 80 ~d~pGvla~i~~~L~~~~InI~~~~~~~~~~~~~~~i~~--~------d~~~A~~~L~~ 130 (144)
T 2f06_A 80 PNVPGALAKVLGFLSAEGVFIEYMYSFANNNVANVVIRP--S------NMDKCIEVLKE 130 (144)
T ss_dssp ESSTTHHHHHHHHHHHTTCCEEEEEEEEETTEEEEEEEE--S------CHHHHHHHHHH
T ss_pred CCCCcHHHHHHHHHHHCCCCEEEEEEEccCCcEEEEEEe--C------CHHHHHHHHHH
Confidence 578999999999999999999664444245555544433 1 56677777766
No 41
>2l5g_A GPS2 protein, G protein pathway suppressor 2; GPS2, SMRT, TBL1, CO-repressor, transcription regulator; NMR {Homo sapiens}
Probab=64.39 E-value=13 Score=22.41 Aligned_cols=26 Identities=31% Similarity=0.367 Sum_probs=23.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHh
Q 027547 65 QVDEAINYIKMLETKLKECKKRKESL 90 (222)
Q Consensus 65 iL~~ai~YIk~Lq~~v~~L~~~~~~l 90 (222)
.|+++-+-|..|+.+++.|+.++.+|
T Consensus 9 TLeEtkeQi~~l~~kl~~LkeEKHQL 34 (38)
T 2l5g_A 9 SLEETKEQILKLEEKLLALQEEKHQL 34 (38)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 48999999999999999999998765
No 42
>2jee_A YIIU; FTSZ, septum, coiled-coil, cell division, cell cycle, hypothetical protein; 2.8A {Escherichia coli}
Probab=62.07 E-value=11 Score=26.82 Aligned_cols=27 Identities=33% Similarity=0.571 Sum_probs=24.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 027547 66 VDEAINYIKMLETKLKECKKRKESLQG 92 (222)
Q Consensus 66 L~~ai~YIk~Lq~~v~~L~~~~~~l~~ 92 (222)
+..|++-|.-||.++++|+.++..|..
T Consensus 15 Iq~avdtI~lLqmEieELKekN~~L~~ 41 (81)
T 2jee_A 15 VQQAIDTITLLQMEIEELKEKNNSLSQ 41 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 899999999999999999998876554
No 43
>3mwb_A Prephenate dehydratase; L-Phe, PSI, MCSG, structural genomics, midwest center for ST genomics, protein structure initiative, lyase; HET: MSE PHE; 2.00A {Arthrobacter aurescens}
Probab=61.22 E-value=24 Score=30.84 Aligned_cols=60 Identities=10% Similarity=0.144 Sum_probs=44.4
Q ss_pred CCCChHHHHHHHHHhCCceEEEEEEEEeCCE-EEEEEEEEeccCccccCHHHHHHHHHHHHhcc
Q 027547 137 DDQFIFYEVIRILHQDGAEILNAKFSVVGNT-IFHVIHAEIRDSMFGFGAAKISERLKGFVSGC 199 (222)
Q Consensus 137 ~~~~~L~~vl~~Le~lgL~V~~a~~s~~~~~-~~~ti~~kv~~~~~~~~~~~l~~aL~~~I~~~ 199 (222)
++||.|+++|..|...|++.....+-...+. --|.|.+.+... .+-..++++|.++-..+
T Consensus 211 ~~pGaL~~~L~~Fa~~gINLtkIESRP~~~~~~~Y~FfiD~eg~---~~d~~v~~aL~~L~~~~ 271 (313)
T 3mwb_A 211 DHPGALMEILDQFASRGVNLSRIESRPTGQYLGHYFFSIDADGH---ATDSRVADALAGLHRIS 271 (313)
T ss_dssp CCTTHHHHHHHHHHTTTCCEEEEEEEECSSSTTSEEEEEEEESC---TTSHHHHHHHHHHHHHC
T ss_pred CCCCHHHHHHHHHHHCCccEEEEEEeecCCCCccEEEEEEEeCC---CCcHHHHHHHHHHHHhc
Confidence 7899999999999999999999999876543 335556665432 34566777777765544
No 44
>2wt7_A Proto-oncogene protein C-FOS; transcription, transcription regulation, nucleus, activator, repressor, DNA-binding, phosphoprotein, differentiation; 2.30A {Mus musculus} PDB: 1fos_E* 1a02_F* 1s9k_D
Probab=61.19 E-value=32 Score=22.66 Aligned_cols=44 Identities=20% Similarity=0.256 Sum_probs=28.5
Q ss_pred HHHHHHHHHHHHHHHHhcCCCCCCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 027547 33 EKNRRDQMKNLYSTLKSLLPNQPSKEELSLPDQVDEAINYIKMLETKLKECKKRKESLQG 92 (222)
Q Consensus 33 ER~RR~~mn~~~~~LrsLlP~~~~~~k~si~~iL~~ai~YIk~Lq~~v~~L~~~~~~l~~ 92 (222)
||++|....+..++-++ =..-..|+..|+.+++.|+.++..|..
T Consensus 1 Ekr~rrrerNR~AA~rc----------------R~rKk~~~~~Le~~v~~L~~~n~~L~~ 44 (63)
T 2wt7_A 1 EKRRIRRERNKMAAAKC----------------RNRRRELTDTLQAETDQLEDEKSALQT 44 (63)
T ss_dssp CHHHHHHHHHHHHHHHH----------------HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ChHHHHHHHhHHHHHHH----------------HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45555566666666655 123356788888888888887766654
No 45
>2qmx_A Prephenate dehydratase; APC86053, L-Phe inhibition, PDT, CHL tepidum TLS, structural genomics, PSI-2, protein structure initiative; HET: PHE; 2.30A {Chlorobium tepidum tls}
Probab=60.22 E-value=42 Score=28.82 Aligned_cols=61 Identities=7% Similarity=0.069 Sum_probs=46.1
Q ss_pred CCCCChHHHHHHHHHhCCceEEEEEEEEeCCE-EEEEEEEEeccCccccCHHHHHHHHHHHHhcc
Q 027547 136 VDDQFIFYEVIRILHQDGAEILNAKFSVVGNT-IFHVIHAEIRDSMFGFGAAKISERLKGFVSGC 199 (222)
Q Consensus 136 ~~~~~~L~~vl~~Le~lgL~V~~a~~s~~~~~-~~~ti~~kv~~~~~~~~~~~l~~aL~~~I~~~ 199 (222)
.++||.|.++|..|...|++.....+-...+. --|.|.+.+... .+-..+.++|.++-..+
T Consensus 208 ~~~pGaL~~~L~~Fa~~gINLtkIESRP~~~~~~~Y~FfvD~eg~---~~d~~v~~aL~~L~~~~ 269 (283)
T 2qmx_A 208 PNEQGSLFRALATFALRGIDLTKIESRPSRKKAFEYLFYADFIGH---REDQNVHNALENLREFA 269 (283)
T ss_dssp ECCTTHHHHHHHHHHTTTCCEEEEEEEECSSSTTEEEEEEEEESC---TTSHHHHHHHHHHHTTC
T ss_pred CCCCchHHHHHHHHHHcCCCeeEEEeeEcCCCCcceEEEEEEecC---CCcHHHHHHHHHHHHhc
Confidence 47899999999999999999999999976543 456666666542 34467788887765543
No 46
>2qmw_A PDT, prephenate dehydratase; APC85812, prephenate dehydratase (PDT), staphylococcus aureu aureus MU50, structural genomics, PSI-2; 2.30A {Staphylococcus aureus subsp} SCOP: c.94.1.1 d.58.18.3
Probab=59.90 E-value=33 Score=29.24 Aligned_cols=60 Identities=7% Similarity=-0.084 Sum_probs=44.8
Q ss_pred CCCCChHHHHHHHHHhCCceEEEEEEEEeCCE-EEEEEEEEeccCccccCHHHHHHHHHHHHhcc
Q 027547 136 VDDQFIFYEVIRILHQDGAEILNAKFSVVGNT-IFHVIHAEIRDSMFGFGAAKISERLKGFVSGC 199 (222)
Q Consensus 136 ~~~~~~L~~vl~~Le~lgL~V~~a~~s~~~~~-~~~ti~~kv~~~~~~~~~~~l~~aL~~~I~~~ 199 (222)
.++||.|.++|..|...|++.....+-...+. --|.|.+.+. .. +...++++|.++-..+
T Consensus 197 ~~~pGaL~~~L~~Fa~~gINLtkIESRP~~~~~~~Y~FfiD~e-~~---~d~~v~~aL~~L~~~~ 257 (267)
T 2qmw_A 197 HDKPGLLASVLNTFALFNINLSWIESRPLKTQLGMYRFFVQAD-SA---ITTDIKKVIAILETLD 257 (267)
T ss_dssp SCCTTHHHHHHHHHHTTTCCEEEEEEEECSSSTTCEEEEEEES-CC---SCHHHHHHHHHHHHTT
T ss_pred CCCcChHHHHHHHHHHcCCCeeEEEEeecCCCCccEEEEEEEe-cC---CcHHHHHHHHHHHHhc
Confidence 47899999999999999999999999976543 3456666665 22 3467777777665443
No 47
>1zme_C Proline utilization transcription activator; complex (transcription regulation/DNA), PUT3, Zn2Cys6, binuclear cluster; HET: DNA 5IU; 2.50A {Saccharomyces cerevisiae} SCOP: g.38.1.1 h.1.3.1 PDB: 1ajy_A
Probab=54.69 E-value=11 Score=24.63 Aligned_cols=23 Identities=17% Similarity=0.458 Sum_probs=18.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhc
Q 027547 70 INYIKMLETKLKECKKRKESLQG 92 (222)
Q Consensus 70 i~YIk~Lq~~v~~L~~~~~~l~~ 92 (222)
-.||..|+++++.|+.....|..
T Consensus 43 ~~~~~~L~~ri~~Le~~l~~l~~ 65 (70)
T 1zme_C 43 TKYLQQLQKDLNDKTEENNRLKA 65 (70)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 35899999999999998877754
No 48
>1dh3_A Transcription factor CREB; protein-DNA complex, transcription/DNA complex; HET: DNA; 3.00A {Mus musculus} SCOP: h.1.3.1
Probab=53.76 E-value=13 Score=24.15 Aligned_cols=22 Identities=23% Similarity=0.466 Sum_probs=18.8
Q ss_pred HHHHHHHHHHHHHHHHHHHhhc
Q 027547 71 NYIKMLETKLKECKKRKESLQG 92 (222)
Q Consensus 71 ~YIk~Lq~~v~~L~~~~~~l~~ 92 (222)
.|+..|+.+|..|+.++..|..
T Consensus 22 ~~~~~LE~~v~~L~~eN~~L~~ 43 (55)
T 1dh3_A 22 EYVKSLENRVAVLENQNKTLIE 43 (55)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 7999999999999998877654
No 49
>2er8_A Regulatory protein Leu3; Zn(2)Cys(6) binuclear cluster motif, transcription activator/DNA complex; 2.85A {Saccharomyces cerevisiae} PDB: 2ere_A 2erg_A
Probab=50.44 E-value=11 Score=24.98 Aligned_cols=22 Identities=18% Similarity=0.229 Sum_probs=18.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHhh
Q 027547 70 INYIKMLETKLKECKKRKESLQ 91 (222)
Q Consensus 70 i~YIk~Lq~~v~~L~~~~~~l~ 91 (222)
-.||..|+++|+.|+...+.|.
T Consensus 48 ~~~~~~Le~ri~~Le~~l~~l~ 69 (72)
T 2er8_A 48 RARNEAIEKRFKELTRTLTNLT 69 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHCC-
T ss_pred HHHHHHHHHHHHHHHHHHHHHh
Confidence 3899999999999999877553
No 50
>2f06_A Conserved hypothetical protein; structural genomics hypothetical protein, PSI, protein struc initiative; HET: MSE HIS; 2.10A {Bacteroides thetaiotaomicron} SCOP: d.58.18.11 d.58.18.11
Probab=47.47 E-value=82 Score=23.19 Aligned_cols=57 Identities=11% Similarity=0.009 Sum_probs=37.6
Q ss_pred EEEEEEcCCCCChHHHHHHHHHhCCceEEEEEEEEeCCEEEEEEEEEeccCccccCHHHHHHHHHH
Q 027547 129 EVILTSGVDDQFIFYEVIRILHQDGAEILNAKFSVVGNTIFHVIHAEIRDSMFGFGAAKISERLKG 194 (222)
Q Consensus 129 ~V~v~~~~~~~~~L~~vl~~Le~lgL~V~~a~~s~~~~~~~~ti~~kv~~~~~~~~~~~l~~aL~~ 194 (222)
.+.|.. .++||.+.+|...|.+.|+.|.........+.-+..|. + .+.+...+.|.+
T Consensus 8 ~i~v~v-~d~~G~l~~i~~~la~~~inI~~i~~~~~~~~~~~~~~--~------~d~~~a~~~L~~ 64 (144)
T 2f06_A 8 QLSIFL-ENKSGRLTEVTEVLAKENINLSALCIAENADFGILRGI--V------SDPDKAYKALKD 64 (144)
T ss_dssp EEEEEE-CSSSSHHHHHHHHHHHTTCCEEEEEEEECSSCEEEEEE--E------SCHHHHHHHHHH
T ss_pred EEEEEe-cCCCcHHHHHHHHHHHCCCCEEEEEEEecCCCCEEEEE--e------CCHHHHHHHHHH
Confidence 344444 47899999999999999999998877644332222222 2 245666666664
No 51
>1gd2_E Transcription factor PAP1; basic leucine zipper, protein-DNA complex, transcription/DNA complex; HET: DNA; 2.00A {Schizosaccharomyces pombe} SCOP: h.1.3.1
Probab=46.11 E-value=19 Score=24.62 Aligned_cols=21 Identities=29% Similarity=0.265 Sum_probs=15.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHh
Q 027547 70 INYIKMLETKLKECKKRKESL 90 (222)
Q Consensus 70 i~YIk~Lq~~v~~L~~~~~~l 90 (222)
-.||+.|+.+|.+|+...+.+
T Consensus 28 ~~~i~~LE~~v~~le~~~~~l 48 (70)
T 1gd2_E 28 EDHLKALETQVVTLKELHSST 48 (70)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 468888888888887655543
No 52
>1kd8_B GABH BLL, GCN4 acid base heterodimer base-D12LA16L; coiled coil heterodimer, de novo protein; 1.90A {Synthetic} SCOP: h.1.3.1 PDB: 1kd9_B 1kdd_B
Probab=45.13 E-value=22 Score=21.21 Aligned_cols=19 Identities=32% Similarity=0.427 Sum_probs=13.0
Q ss_pred HHHHHHHHHHHHHHHHHhh
Q 027547 73 IKMLETKLKECKKRKESLQ 91 (222)
Q Consensus 73 Ik~Lq~~v~~L~~~~~~l~ 91 (222)
+++|+.+|++|-.++..|+
T Consensus 3 MnQLE~KVEeLl~~~~~Le 21 (36)
T 1kd8_B 3 VKQLKAKVEELKSKLWHLK 21 (36)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHhHHHH
Confidence 5677777777777666554
No 53
>2wq1_A General control protein GCN4; TAA, nucleus, coiled coil, DNA-binding, protein export, ION coordination, polar core residues; 1.08A {Saccharomyces cerevisiae} PDB: 2wq0_A 2wq2_A 2wq3_A 2wpz_A 2wpy_A 1ij0_A 1ij1_A 1gcm_A 1rb5_A 1rb6_A 1rb1_A 1rb4_A 1swi_A 3k7z_A 1zii_A 1zij_A 1ij2_A 1ij3_A 1zil_A 1zim_A ...
Probab=41.36 E-value=28 Score=20.35 Aligned_cols=19 Identities=26% Similarity=0.286 Sum_probs=12.3
Q ss_pred HHHHHHHHHHHHHHHHHhh
Q 027547 73 IKMLETKLKECKKRKESLQ 91 (222)
Q Consensus 73 Ik~Lq~~v~~L~~~~~~l~ 91 (222)
+++|+.+|++|-.++..|+
T Consensus 2 MnQLEdKVEell~~~~~le 20 (33)
T 2wq1_A 2 MKQLEDKIEENTSKIYHNT 20 (33)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHhhHHHH
Confidence 4567777777776665554
No 54
>2dgc_A Protein (GCN4); basic domain, leucine zipper, DNA binding, eukaryotic regulatory protein, transcription/DNA complex; HET: DNA; 2.20A {Saccharomyces cerevisiae} SCOP: h.1.3.1 PDB: 1dgc_A* 1ld4_E 1ysa_C* 3p8m_D
Probab=40.37 E-value=27 Score=23.25 Aligned_cols=24 Identities=25% Similarity=0.371 Sum_probs=18.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhc
Q 027547 69 AINYIKMLETKLKECKKRKESLQG 92 (222)
Q Consensus 69 ai~YIk~Lq~~v~~L~~~~~~l~~ 92 (222)
-..|+..|+.+|+.|+.++..|..
T Consensus 28 K~~~~~~Le~~v~~L~~eN~~L~~ 51 (63)
T 2dgc_A 28 KLQRMKQLEDKVEELLSKNYHLEN 51 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 347888999999999888777654
No 55
>1jnm_A Proto-oncogene C-JUN; BZIP, protein-DNA complex, transcription/DNA complex; 2.20A {Homo sapiens} SCOP: h.1.3.1 PDB: 1fos_F 2h7h_A 1t2k_C 1a02_J* 1s9k_E 1jun_A
Probab=40.37 E-value=27 Score=22.92 Aligned_cols=24 Identities=29% Similarity=0.379 Sum_probs=18.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhc
Q 027547 69 AINYIKMLETKLKECKKRKESLQG 92 (222)
Q Consensus 69 ai~YIk~Lq~~v~~L~~~~~~l~~ 92 (222)
-..|+..|+.++..|+.++..|..
T Consensus 20 Kk~~~~~Le~~v~~L~~~n~~L~~ 43 (62)
T 1jnm_A 20 KLERIARLEEKVKTLKAQNSELAS 43 (62)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 357888888888888888776654
No 56
>3c3g_A Alpha/beta peptide with the GCN4-PLI SIDE chain S AN (alpha-alpha-beta) backbone; helix bundle, foldamer, unknown function protein; HET: HMR B3Q B3D B3E B3L BIL B3K BAL GOL; 1.80A {Synthetic} PDB: 3heu_A* 3het_A* 3hev_A* 3hew_A* 3hey_A* 3hex_A* 3c3h_A*
Probab=35.31 E-value=40 Score=19.70 Aligned_cols=19 Identities=26% Similarity=0.265 Sum_probs=13.1
Q ss_pred HHHHHHHHHHHHHHHHHhh
Q 027547 73 IKMLETKLKECKKRKESLQ 91 (222)
Q Consensus 73 Ik~Lq~~v~~L~~~~~~l~ 91 (222)
+.+|+.+|++|-.++..|.
T Consensus 2 MnQLEdKvEeLl~~~~~Le 20 (33)
T 3c3g_A 2 MKXIEXKLXEIXSKXYHXE 20 (33)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHhhHHH
Confidence 4677777777777766554
No 57
>1t2k_D Cyclic-AMP-dependent transcription factor ATF-2; protein DNA complex, transcription/DNA complex; 3.00A {Homo sapiens} SCOP: h.1.3.1
Probab=35.27 E-value=36 Score=22.15 Aligned_cols=23 Identities=22% Similarity=0.297 Sum_probs=16.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhc
Q 027547 70 INYIKMLETKLKECKKRKESLQG 92 (222)
Q Consensus 70 i~YIk~Lq~~v~~L~~~~~~l~~ 92 (222)
-.|+..|+.+++.|+.++..|..
T Consensus 21 k~~~~~Le~~~~~L~~~n~~L~~ 43 (61)
T 1t2k_D 21 KVWVQSLEKKAEDLSSLNGQLQS 43 (61)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 46788888888888877766654
No 58
>3byp_A CZRB protein; membrane protein, zinc transporter, transport protein; 1.70A {Thermus thermophilus} SCOP: d.52.9.1 PDB: 3byr_A
Probab=34.74 E-value=1.1e+02 Score=20.81 Aligned_cols=60 Identities=15% Similarity=0.137 Sum_probs=40.5
Q ss_pred ChHHHHHHHHHhC----CceEEEEEEEEeCCEEEEEEEEEeccCccccCHHHHHHHHHHHHhcc
Q 027547 140 FIFYEVIRILHQD----GAEILNAKFSVVGNTIFHVIHAEIRDSMFGFGAAKISERLKGFVSGC 199 (222)
Q Consensus 140 ~~L~~vl~~Le~l----gL~V~~a~~s~~~~~~~~ti~~kv~~~~~~~~~~~l~~aL~~~I~~~ 199 (222)
..+.+|.+.+.+. -.+|....+-..|...+.++++.+........+.++.+++.+.|...
T Consensus 10 ~~~~~I~~~l~~~~~~gV~~vh~l~~~~~g~~~~v~~hi~v~~~~~~~~~h~i~~~ie~~l~~~ 73 (94)
T 3byp_A 10 EEVERIRAFLQERIRGRALEVHDLKTRRAGPRSFLEFHLVVRGDTPVEEAHRLCDELERALAQA 73 (94)
T ss_dssp HHHHHHHHHHHHHHTTTCSEEEEEEEEEETTEEEEEEEEEECTTCBHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCCCCceeeeeEEEEEECCcEEEEEEEEECCCCcHHHHHHHHHHHHHHHHHH
Confidence 3455666666544 45788888888888888899998865431234466777777777544
No 59
>2zzt_A Putative uncharacterized protein; cation diffusion facilitator (CDF), transporter, zinc, membrane protein, cytosolic domain; 2.84A {Thermotoga maritima}
Probab=33.48 E-value=1.2e+02 Score=21.39 Aligned_cols=60 Identities=12% Similarity=0.179 Sum_probs=39.3
Q ss_pred hHHHHHHHHHhCC--ceEEEEEEEEeCCEEEEEEEEEeccCccccCHHHHHHHHHHHHhccc
Q 027547 141 IFYEVIRILHQDG--AEILNAKFSVVGNTIFHVIHAEIRDSMFGFGAAKISERLKGFVSGCA 200 (222)
Q Consensus 141 ~L~~vl~~Le~lg--L~V~~a~~s~~~~~~~~ti~~kv~~~~~~~~~~~l~~aL~~~I~~~~ 200 (222)
.+.+|.+.+.+.. ..|....+-..|...+.++++.+........+.++.+++.+.|...+
T Consensus 11 ~~~~I~~~l~~~~gV~~vh~lr~r~~G~~~~v~~hI~v~~~~sv~eah~i~~~ie~~L~~~~ 72 (107)
T 2zzt_A 11 MYDDIFAVLERFPNVHNPHRVRIRRVGTKYFIEMDIEVDGKMSVKDAHELTVKIRKEMLKRR 72 (107)
T ss_dssp HHHHHHHHHTTCSSCEEEEEEEEECSCC-CEEEEEEEECTTSCHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHcCCCccccEEEEEEEECCcEEEEEEEEECCCCCHHHHHHHHHHHHHHHHHHC
Confidence 4566777777653 46777777777888888999988654312345567777777775543
No 60
>2i9o_A MHB8A peptide; beta-hairpin, alpha-helix, de novo protein; NMR {Synthetic}
Probab=32.66 E-value=19 Score=21.04 Aligned_cols=11 Identities=36% Similarity=0.425 Sum_probs=5.2
Q ss_pred CCCCCcCCCCC
Q 027547 3 YLGQSLEAKGS 13 (222)
Q Consensus 3 ~~~~~~~~~~~ 13 (222)
|-|||++|+||
T Consensus 11 yeggggggggs 21 (37)
T 2i9o_A 11 YEGGGGGGGGS 21 (37)
T ss_dssp CCCSCCCCSCS
T ss_pred eecCCCCCcch
Confidence 44555544443
No 61
>1kd8_A GABH AIV, GCN4 acid base heterodimer acid-D12IA16V; coiled coil heterodimer, de novo protein; 1.90A {Synthetic} SCOP: h.1.3.1 PDB: 1kdd_A 1kd9_A
Probab=32.46 E-value=31 Score=20.58 Aligned_cols=19 Identities=26% Similarity=0.377 Sum_probs=11.0
Q ss_pred HHHHHHHHHHHHHHHHHhh
Q 027547 73 IKMLETKLKECKKRKESLQ 91 (222)
Q Consensus 73 Ik~Lq~~v~~L~~~~~~l~ 91 (222)
+++|+.+|++|..++..|.
T Consensus 3 MnQLE~kVEeLl~~~~~Le 21 (36)
T 1kd8_A 3 VKQLEAEVEEIESEVWHLE 21 (36)
T ss_dssp CHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHhhHHHH
Confidence 3556666666666555443
No 62
>2qlw_A RHAU; mutarotase, isomerase; HET: MSE; 1.60A {Rhizobium leguminosarum BV} PDB: 2qlx_A*
Probab=32.23 E-value=91 Score=24.19 Aligned_cols=74 Identities=20% Similarity=0.284 Sum_probs=49.3
Q ss_pred ChHHHHHHHHHhCCceEEEEEEEEeCCEEEEEEEEEeccCccccCHHHHHHHHHHHHhccc------ccccccCCCCCCc
Q 027547 140 FIFYEVIRILHQDGAEILNAKFSVVGNTIFHVIHAEIRDSMFGFGAAKISERLKGFVSGCA------SEGEMQLPELWDF 213 (222)
Q Consensus 140 ~~L~~vl~~Le~lgL~V~~a~~s~~~~~~~~ti~~kv~~~~~~~~~~~l~~aL~~~I~~~~------~~~~~~~~~~~~~ 213 (222)
.+-..|+++|.+.|+.=.++-....++++|..+.+.-...........+.++=.+....+. +.++.+|+|+|.+
T Consensus 64 ~VWPEv~~~Lk~aGI~nYSIfl~~~~~~LF~~~E~~dda~~a~ma~~pv~qrWwa~M~~~~~~~pd~sp~~~~LeeVF~L 143 (144)
T 2qlw_A 64 EIWPELVDLLHQSGASDYSIHLDRETNTLFGVLTRPKDHTMASLPDHPVMKKWWAHMADIMATNPDNSPVQSDLVTLFHM 143 (144)
T ss_dssp TCCHHHHHHHHHHTCEEEEEEEETTTTEEEEEEEEETTCCGGGGGGCHHHHHHHHHHGGGBCBCTTSCBCCEECEEEEEE
T ss_pred hCCHHHHHHHHHcCCeEEEEEEECCCCeEEEEEEEcCHHHHHhccCChHHHHHHHHHHHHhccCCCCCcccccceeeeeC
Confidence 4556799999999976555544444888888888754222234456678888888777774 4456667776653
No 63
>1xkm_B Distinctin chain B; pore-forming peptide, heterodimer, structure, homodimer, disulfide, four-helix bundle, antibiotic; NMR {Synthetic} SCOP: j.4.1.6
Probab=32.00 E-value=52 Score=17.73 Aligned_cols=17 Identities=41% Similarity=0.563 Sum_probs=13.8
Q ss_pred HHHHHHHHHHHHHHHHH
Q 027547 66 VDEAINYIKMLETKLKE 82 (222)
Q Consensus 66 L~~ai~YIk~Lq~~v~~ 82 (222)
|-+|-+|+.+|.++++.
T Consensus 6 liearkyleqlhrklkn 22 (26)
T 1xkm_B 6 LIEARKYLEQLHRKLKN 22 (26)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhc
Confidence 67888999999888764
No 64
>2oxj_A Hybrid alpha/beta peptide based on the GCN4-P1 Se heptad positions B and F substituted...; helix bundle, foldamer, unknown function; HET: B3K B3D B3E B3S B3Y B3X B3A BAL; 2.00A {Synthetic} PDB: 2oxk_A*
Probab=31.38 E-value=51 Score=19.40 Aligned_cols=20 Identities=25% Similarity=0.287 Sum_probs=14.2
Q ss_pred HHHHHHHHHHHHHHHHHhhc
Q 027547 73 IKMLETKLKECKKRKESLQG 92 (222)
Q Consensus 73 Ik~Lq~~v~~L~~~~~~l~~ 92 (222)
+.+|+.+|++|-.++++|..
T Consensus 3 MnQLE~kVEeLl~~n~~Le~ 22 (34)
T 2oxj_A 3 MXQLEXKVXELLXKNXHLEX 22 (34)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhhhHHH
Confidence 56778888887777766653
No 65
>1pyi_A Protein (pyrimidine pathway regulator 1); protein-DNA complex, transcription/DNA complex, GAL4, zinc finger, Zn2Cys6, binuclear cluster; HET: DNA; 3.20A {Saccharomyces cerevisiae} SCOP: g.38.1.1 h.1.3.1
Probab=30.17 E-value=42 Score=23.16 Aligned_cols=23 Identities=17% Similarity=0.192 Sum_probs=19.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhc
Q 027547 70 INYIKMLETKLKECKKRKESLQG 92 (222)
Q Consensus 70 i~YIk~Lq~~v~~L~~~~~~l~~ 92 (222)
-.|+..|+++++.|+....++..
T Consensus 47 ~~~~~~Le~rl~~le~~l~~~~~ 69 (96)
T 1pyi_A 47 RSYVFFLEDRLAVMMRVLKEYGV 69 (96)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHHHHHHHHhCC
Confidence 35999999999999998876654
No 66
>2lqj_A Mg2+ transport protein; ACT domain, membrane protein, regulation, HYDR; NMR {Mycobacterium tuberculosis}
Probab=30.12 E-value=92 Score=22.09 Aligned_cols=66 Identities=9% Similarity=0.160 Sum_probs=40.3
Q ss_pred eeEEEEEEcC-CCCChHHHHHHHHHhCCceEEEEEEEEe-CCEEEEEEEEEeccCccccCHHHHHHHHHHHH
Q 027547 127 NLEVILTSGV-DDQFIFYEVIRILHQDGAEILNAKFSVV-GNTIFHVIHAEIRDSMFGFGAAKISERLKGFV 196 (222)
Q Consensus 127 ~v~V~v~~~~-~~~~~L~~vl~~Le~lgL~V~~a~~s~~-~~~~~~ti~~kv~~~~~~~~~~~l~~aL~~~I 196 (222)
...|.|+|.. ........+++.|+..++.+.+..+..+ ++.+- |.+.+... ..+...|.+-+.++-
T Consensus 8 ~Y~v~Vic~~~~e~~vR~lL~~~L~~~~~~l~~l~s~~~~~~~ve--I~A~L~at--~~~~~~Le~iv~rLs 75 (94)
T 2lqj_A 8 PYQVRVICRPKAETYVRAHIVQRTSSNDITLRGIRTGPAGDDNIT--LTAHLLMV--GHTPAKLERLVAELS 75 (94)
T ss_dssp EEEEEEEECHHHHHHHHHHHHHHHHHHTEEEEEEEEEECSSSCEE--EEEEEEEE--SCCHHHHHHHHHHHH
T ss_pred EEEEEEEECcHHHHHHHHHHHHHHhcCCCceeEeeeecCCCCeEE--EEEEEEec--CCCHHHHHHHHHHHh
Confidence 3678888953 2346777899999999999999996553 33222 33333322 245555554444443
No 67
>2hy6_A General control protein GCN4; protein design, parallel heptamer, protein structure, biosyn protein; 1.25A {Saccharomyces cerevisiae} SCOP: h.1.3.1 PDB: 2nrn_A 3crp_A 2b1f_A 3crp_B 2ipz_A 3ck4_A 3ck4_B 2b22_A 1ce9_A
Probab=29.69 E-value=37 Score=19.97 Aligned_cols=19 Identities=21% Similarity=0.261 Sum_probs=12.7
Q ss_pred HHHHHHHHHHHHHHHHHhh
Q 027547 73 IKMLETKLKECKKRKESLQ 91 (222)
Q Consensus 73 Ik~Lq~~v~~L~~~~~~l~ 91 (222)
+++|+.+|++|-.++..|.
T Consensus 3 MnQLEdkVEeLl~~~~~Le 21 (34)
T 2hy6_A 3 VKQLADAVEELASANYHLA 21 (34)
T ss_dssp CHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHhhHHHH
Confidence 4567777777777666554
No 68
>1hwt_C Protein (heme activator protein); transcription factor, asymmetry, GAL4, complex activator/DNA, gene regulation/DNA complex; HET: DNA; 2.50A {Saccharomyces cerevisiae} SCOP: g.38.1.1 h.1.3.1 PDB: 2hap_C* 1qp9_A* 1pyc_A
Probab=28.89 E-value=19 Score=24.18 Aligned_cols=21 Identities=24% Similarity=0.268 Sum_probs=15.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHh
Q 027547 70 INYIKMLETKLKECKKRKESL 90 (222)
Q Consensus 70 i~YIk~Lq~~v~~L~~~~~~l 90 (222)
-.||..|+++|+.|+.....+
T Consensus 57 ~~~~~~L~~ri~~LE~~l~~l 77 (81)
T 1hwt_C 57 DNELKKLRERVKSLEKTLSKV 77 (81)
T ss_dssp HHHHHHHHHHHHHHHTTC---
T ss_pred HHHHHHHHHHHHHHHHHHHHh
Confidence 479999999999998766544
No 69
>3c3f_A Alpha/beta peptide with the GCN4-PLI SIDE chain S AN (alpha-alpha-alpha-beta) backbone...; helix bundle, foldamer, unknown function, de novo protein; HET: B3K B3D B3E BIL B3L BAL; 2.00A {Synthetic} SCOP: h.1.3.1
Probab=28.63 E-value=60 Score=19.05 Aligned_cols=19 Identities=16% Similarity=0.097 Sum_probs=12.3
Q ss_pred HHHHHHHHHHHHHHHHHhh
Q 027547 73 IKMLETKLKECKKRKESLQ 91 (222)
Q Consensus 73 Ik~Lq~~v~~L~~~~~~l~ 91 (222)
+.+|+.+|++|-.++..|.
T Consensus 3 MnQLEdKVEeLl~~~~~Le 21 (34)
T 3c3f_A 3 MXQIEXKLEXILSXLYHXE 21 (34)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhhhHHH
Confidence 4567777777766665554
No 70
>1sc6_A PGDH, D-3-phosphoglycerate dehydrogenase; allosteric regulation phosphoglycerate dehydrogenase PGDH, oxidoreductase; HET: NAD; 2.09A {Escherichia coli} SCOP: c.2.1.4 c.23.12.1 d.58.18.1 PDB: 1psd_A* 1yba_A* 2p9c_A* 2p9e_A* 2pa3_A* 2p9g_A*
Probab=28.54 E-value=1.7e+02 Score=25.99 Aligned_cols=40 Identities=15% Similarity=0.219 Sum_probs=34.5
Q ss_pred CCCCChHHHHHHHHHhCCceEEEEEEEEeCCEEEEEEEEE
Q 027547 136 VDDQFIFYEVIRILHQDGAEILNAKFSVVGNTIFHVIHAE 175 (222)
Q Consensus 136 ~~~~~~L~~vl~~Le~lgL~V~~a~~s~~~~~~~~ti~~k 175 (222)
.++||++-+|-..|-++|++|..-...+.++..+..|.+.
T Consensus 339 ~d~PGvi~~i~~iL~~~~iNIa~m~~~r~g~~A~~vidvD 378 (404)
T 1sc6_A 339 ENRPGVLTALNKIFAEQGVNIAAQYLQTSAQMGYVVIDIE 378 (404)
T ss_dssp ESCTTHHHHHHHHHHHTTCEEEEEEEEECSSEEEEEEEEE
T ss_pred CCCCCHHHHHHHHHHHcCCCHHHhhccCCCCEEEEEEEcC
Confidence 4899999999999999999999999988887777766543
No 71
>2dtj_A Aspartokinase; protein-ligand complex, regulatory subunit, transferase; HET: CIT; 1.58A {Corynebacterium glutamicum} PDB: 3aaw_B* 3ab2_B 3ab4_B*
Probab=27.82 E-value=2e+02 Score=22.09 Aligned_cols=48 Identities=17% Similarity=-0.023 Sum_probs=30.5
Q ss_pred eEEEEEEcCCCCChHHHHHHHHHhCCceEEEEEEEEe---CCEEEEEEEEE
Q 027547 128 LEVILTSGVDDQFIFYEVIRILHQDGAEILNAKFSVV---GNTIFHVIHAE 175 (222)
Q Consensus 128 v~V~v~~~~~~~~~L~~vl~~Le~lgL~V~~a~~s~~---~~~~~~ti~~k 175 (222)
..|.|....+++|.+.+|++.|.+.|+.|.-...++. ++..-++|.+.
T Consensus 16 ~~Itv~~~~~~~G~~a~if~~La~~~InId~i~~s~~~~~~~~~~isf~v~ 66 (178)
T 2dtj_A 16 AKVTVLGISDKPGEAAKVFRALADAEINIDMVLQNVSSVEDGTTDITFTCP 66 (178)
T ss_dssp EEEEEEEEECSTTHHHHHHHHHHHTTCCCCEEEECCCCTTTCEEEEEEEEE
T ss_pred EEEEEecCCCCccHHHHHHHHHHHcCCCEEEEEcCCCCCCCCceEEEEEEc
Confidence 4455532247899999999999999976665554433 33333444443
No 72
>1phz_A Protein (phenylalanine hydroxylase); aromatic amino acid hydroxylase, phosphorylation, intrasteric regulation, allosteric regulation; 2.20A {Rattus norvegicus} SCOP: d.58.18.3 d.178.1.1 PDB: 2phm_A
Probab=27.45 E-value=71 Score=29.23 Aligned_cols=59 Identities=5% Similarity=0.018 Sum_probs=43.5
Q ss_pred CCCCChHHHHHHHHHhCCceEEEEEEEEeCC-EEEEEEEEEeccCccccCHHHHHHHHHHHHhc
Q 027547 136 VDDQFIFYEVIRILHQDGAEILNAKFSVVGN-TIFHVIHAEIRDSMFGFGAAKISERLKGFVSG 198 (222)
Q Consensus 136 ~~~~~~L~~vl~~Le~lgL~V~~a~~s~~~~-~~~~ti~~kv~~~~~~~~~~~l~~aL~~~I~~ 198 (222)
.+++|.|.++|..|...|+++....+-...+ .--|.|.+.+. . .+-..+.++|.++-..
T Consensus 42 ~n~pGAL~~~L~~Fa~~gINLTkIESRPsk~~~~eY~FfVD~e-h---~~d~~v~~AL~eL~~~ 101 (429)
T 1phz_A 42 KEEVGALAKVLRLFEENDINLTHIESRPSRLNKDEYEFFTYLD-K---RTKPVLGSIIKSLRND 101 (429)
T ss_dssp ECCTTHHHHHHHHHHTTTCCTTSEEEEECSSCTTEEEEEECBC-G---GGHHHHHHHHHHHHHT
T ss_pred CCCccHHHHHHHHHHHcCCceEEEEeeecCCCCccEEEEEEEe-e---CCCHHHHHHHHHHHhh
Confidence 4679999999999999999999999987643 24455666555 2 2345577777766555
No 73
>3w03_C DNA repair protein XRCC4; coiled-coil, NHEJ, DSBS repair, KU70/80, DNA-PKCS, DNA ligas binding protein; HET: DNA; 8.49A {Homo sapiens}
Probab=27.32 E-value=67 Score=26.02 Aligned_cols=32 Identities=16% Similarity=0.155 Sum_probs=27.3
Q ss_pred ChhHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 027547 61 SLPDQVDEAINYIKMLETKLKECKKRKESLQG 92 (222)
Q Consensus 61 si~~iL~~ai~YIk~Lq~~v~~L~~~~~~l~~ 92 (222)
++.++++-+++-+..|+.+++.|+++++.|..
T Consensus 142 ~i~elid~~ld~~~~L~~~n~~LqkeNeRL~~ 173 (184)
T 3w03_C 142 VIRELICYCLDTIAENQAKNEHLQKENERLLR 173 (184)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45667888999999999999999999887764
No 74
>3h90_A Ferrous-iron efflux pump FIEF; membrane protein, zinc transporter, cell inner membrane, cell membrane, ION transport, iron transport; 2.90A {Escherichia coli k-12} PDB: 2qfi_A
Probab=27.17 E-value=2.5e+02 Score=23.14 Aligned_cols=62 Identities=19% Similarity=0.131 Sum_probs=45.0
Q ss_pred CChHHHHHHHHHhCC--ceEEEEEEEEeCCEEEEEEEEEeccCccccCHHHHHHHHHHHHhccc
Q 027547 139 QFIFYEVIRILHQDG--AEILNAKFSVVGNTIFHVIHAEIRDSMFGFGAAKISERLKGFVSGCA 200 (222)
Q Consensus 139 ~~~L~~vl~~Le~lg--L~V~~a~~s~~~~~~~~ti~~kv~~~~~~~~~~~l~~aL~~~I~~~~ 200 (222)
+....++.+.+++.. .+|.+..+-..+...+.+++..+.......+.+++.+++++.+.+.+
T Consensus 205 ~~~~~~i~~~i~~~~~V~~v~~l~~~~~G~~~~v~~hv~v~~~~~~~~~~~i~~~i~~~l~~~~ 268 (283)
T 3h90_A 205 DEERQEIIDIVTSWPGVSGAHDLRTRQSGPTRFIQIHLEMEDSLPLVQAHMVADQVEQAILRRF 268 (283)
T ss_dssp HHHHHHHHHHHHHSSSCSEEEEEEEEEETTEEEEEEEEECCTTCBHHHHHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHhcCCCcccceeeEEEEECCcEEEEEEEEeCCCCCHHHHHHHHHHHHHHHHHHC
Confidence 345667788887753 58888888888888888899988765423356778888888776543
No 75
>3m48_A General control protein GCN4; leucine zipper, synthetic peptide, alpha helix, activa amino-acid biosynthesis, DNA-binding, nucleus; 1.45A {Synthetic} PDB: 3i1g_A 2ahp_A* 2o7h_A
Probab=27.12 E-value=40 Score=19.73 Aligned_cols=18 Identities=28% Similarity=0.351 Sum_probs=11.6
Q ss_pred HHHHHHHHHHHHHHHHhh
Q 027547 74 KMLETKLKECKKRKESLQ 91 (222)
Q Consensus 74 k~Lq~~v~~L~~~~~~l~ 91 (222)
.+|+.+|++|-.++.+|.
T Consensus 3 ~QLE~kVEeLl~~n~~Le 20 (33)
T 3m48_A 3 AQLEAKVEELLSKNWNLE 20 (33)
T ss_dssp CHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHhHHHH
Confidence 456777777766665554
No 76
>3coq_A Regulatory protein GAL4; helix bundle, protein-DNA complex; HET: DNA; 2.40A {Saccharomyces cerevisiae} SCOP: g.38.1.1 h.1.3.1
Probab=26.64 E-value=57 Score=22.02 Aligned_cols=23 Identities=9% Similarity=0.011 Sum_probs=19.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhc
Q 027547 70 INYIKMLETKLKECKKRKESLQG 92 (222)
Q Consensus 70 i~YIk~Lq~~v~~L~~~~~~l~~ 92 (222)
-.|+..|+++++.|+.....+..
T Consensus 44 ~~~~~~L~~r~~~le~~l~~l~~ 66 (89)
T 3coq_A 44 RAHLTEVESRLERLEQLFLLIFP 66 (89)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHCS
T ss_pred HHHHHHHHHHHHHHHHHHHHHcC
Confidence 36999999999999998876643
No 77
>2dt9_A Aspartokinase; protein-ligand complex, regulatory subunit, transferase; 2.15A {Thermus thermophilus} PDB: 2zho_A
Probab=26.46 E-value=2.1e+02 Score=21.64 Aligned_cols=48 Identities=15% Similarity=0.015 Sum_probs=31.4
Q ss_pred eEEEEEEcCCCCChHHHHHHHHHhCCceEEEEEEEEe---CCEEEEEEEEE
Q 027547 128 LEVILTSGVDDQFIFYEVIRILHQDGAEILNAKFSVV---GNTIFHVIHAE 175 (222)
Q Consensus 128 v~V~v~~~~~~~~~L~~vl~~Le~lgL~V~~a~~s~~---~~~~~~ti~~k 175 (222)
..|.|..-.+++|.+.+|+++|.+.|+.|.-...+.. ++..-.+|.+.
T Consensus 17 a~Itv~g~~~~~G~~a~if~~La~~~InVd~I~q~~~~~~~g~~~isf~V~ 67 (167)
T 2dt9_A 17 AQIGLIGIPDQPGIAAKVFQALAERGIAVDMIIQGVPGHDPSRQQMAFTVK 67 (167)
T ss_dssp EEEEEEEEECSTTHHHHHHHHHHHHTCCCSCEEBCCCCSCTTEEEEEEEEE
T ss_pred EEEEEecCCCCCCHHHHHHHHHHHcCCcEEEEEcCCCCCCCCceEEEEEEe
Confidence 3455543246789999999999999988877655432 23444444443
No 78
>2jqq_A Conserved oligomeric golgi complex subunit 2; protein, helical bundle, vesicular transport, tethering, protein transport; NMR {Saccharomyces cerevisiae}
Probab=26.39 E-value=37 Score=27.89 Aligned_cols=45 Identities=13% Similarity=0.392 Sum_probs=32.8
Q ss_pred HHHHHHHHHHHHhcCCCCCCCCCCChhHHHHHHHHHHHHHHHHHHHHHH
Q 027547 37 RDQMKNLYSTLKSLLPNQPSKEELSLPDQVDEAINYIKMLETKLKECKK 85 (222)
Q Consensus 37 R~~mn~~~~~LrsLlP~~~~~~k~si~~iL~~ai~YIk~Lq~~v~~L~~ 85 (222)
|..++.-...||-|.-..-. .-.+++.+|++|++.|-+-...|+.
T Consensus 53 ~~Dl~~F~~QL~qL~~~~i~----~Tre~v~d~l~YLkkLD~l~~~Lq~ 97 (204)
T 2jqq_A 53 QSDLQKFMTQLDHLIKDDIS----NTQEIIKDVLEYLKKLDEIYGSLRN 97 (204)
T ss_dssp HHHHHHHHHHHHHHHHHSCS----TTHHHHHHHHHHHHHHHHHHHTCSS
T ss_pred HHHHHHHHHHHHHHHhhhhh----hHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 67788888888888743332 2245599999999999877766653
No 79
>2akf_A Coronin-1A; coiled coil, protein binding; 1.20A {Synthetic}
Probab=25.70 E-value=92 Score=17.71 Aligned_cols=18 Identities=17% Similarity=0.405 Sum_probs=8.7
Q ss_pred HHHHHHHHHHHHHHHHHh
Q 027547 73 IKMLETKLKECKKRKESL 90 (222)
Q Consensus 73 Ik~Lq~~v~~L~~~~~~l 90 (222)
+..|+.-|++|+++.+.|
T Consensus 8 ~r~l~~ivq~lq~r~drl 25 (32)
T 2akf_A 8 VRNLNAIVQKLQERLDRL 25 (32)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 344555555555544444
No 80
>1ygy_A PGDH, D-3-phosphoglycerate dehydrogenase; oxidoreductase, serine biosy structural genomics, PSI, protein structure initiative; HET: TAR; 2.30A {Mycobacterium tuberculosis} SCOP: c.2.1.4 c.23.12.1 d.58.18.1 d.81.2.2 PDB: 3dc2_A* 3ddn_A*
Probab=25.59 E-value=3e+02 Score=25.21 Aligned_cols=53 Identities=15% Similarity=0.122 Sum_probs=39.8
Q ss_pred CCCCChHHHHHHHHHhCCceEEEEEEEEe--CCEEEEEEEEEeccCccccCHHHHHHHHHH
Q 027547 136 VDDQFIFYEVIRILHQDGAEILNAKFSVV--GNTIFHVIHAEIRDSMFGFGAAKISERLKG 194 (222)
Q Consensus 136 ~~~~~~L~~vl~~Le~lgL~V~~a~~s~~--~~~~~~ti~~kv~~~~~~~~~~~l~~aL~~ 194 (222)
.++||.+-+|...|-++|+.|-+.++... ++..+..|.+ .+ .-++++.+.|++
T Consensus 462 ~D~PG~I~~v~~~Lg~~~INIa~m~v~r~~~~~~a~~~i~v--d~----~~~~~~l~~l~~ 516 (529)
T 1ygy_A 462 VDRPGALGKIGTLLGTAGVNIQAAQLSEDAEGPGATILLRL--DQ----DVPDDVRTAIAA 516 (529)
T ss_dssp SCCTTHHHHHHHHHHHTTCCEEEEEEEECSSSSCEEEEEEE--SS----CCCHHHHHHHHH
T ss_pred CCCCchHHHHHHHHHhcCCCeeeEEEecCCCCCEEEEEEEE--CC----CCCHHHHHHHhc
Confidence 58899999999999999999999999865 4556665554 33 234566666665
No 81
>3k5p_A D-3-phosphoglycerate dehydrogenase; niaid, ssgcid, seattle structural genomics center for infect disease, brucellosis; 2.15A {Brucella melitensis biovar abortus}
Probab=24.98 E-value=2e+02 Score=25.89 Aligned_cols=57 Identities=11% Similarity=0.219 Sum_probs=40.6
Q ss_pred CeeEEEeeCCeeEEEEEEcCCCCChHHHHHHHHHhCCceEEEEEEEEeCCEEEEEEEE
Q 027547 117 PEIEIHEMGSNLEVILTSGVDDQFIFYEVIRILHQDGAEILNAKFSVVGNTIFHVIHA 174 (222)
Q Consensus 117 p~VeV~~~g~~v~V~v~~~~~~~~~L~~vl~~Le~lgL~V~~a~~s~~~~~~~~ti~~ 174 (222)
|.|..-.......|.++- ++.||+|.+|-.+|-++|+.|..-...+.++..+..+-+
T Consensus 333 p~~~~~~~~~~~r~~~~h-~n~p~~~~~i~~~~~~~~~ni~~~~~~~~~~~~y~~~d~ 389 (416)
T 3k5p_A 333 PQVQLPPRPTGTRFMHVH-ENRPGILNSLMNVFSHHHINIASQFLQTDGEVGYLVMEA 389 (416)
T ss_dssp CCCCCCCCSSSEEEEEEE-CCCTTHHHHHHHHHHHTTCCEEEEEEEECSSCEEEEEEE
T ss_pred CCcCCCCCCCceEEEEEe-cCCccHHHHHHHHHHHcCCCHHHHhccCCCceEEEEEEe
Confidence 444432333334555544 588999999999999999999988877877766655544
No 82
>2r2v_A GCN4 leucine zipper; coiled coils, anti-parallel tetramer, protein design, de novo protein; HET: CIT; 1.90A {Saccharomyces cerevisiae} SCOP: h.1.3.1
Probab=24.81 E-value=77 Score=18.61 Aligned_cols=18 Identities=22% Similarity=0.246 Sum_probs=11.0
Q ss_pred HHHHHHHHHHHHHHHHHh
Q 027547 73 IKMLETKLKECKKRKESL 90 (222)
Q Consensus 73 Ik~Lq~~v~~L~~~~~~l 90 (222)
+++|+.+|++|-.++..+
T Consensus 3 MnQledKvEel~~~~~~l 20 (34)
T 2r2v_A 3 LKQVADKLEEVASKLYHN 20 (34)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHhHHH
Confidence 456666666666665544
No 83
>2bni_A General control protein GCN4; four helix bundle, antiparallel four helix bundle acyl transferase; HET: TYZ; 1.5A {Saccharomyces cerevisiae} SCOP: h.1.3.1 PDB: 2ccn_A 1w5k_A* 2ccf_A 2cce_A 1w5j_A* 1uo2_A 1gcl_A 1uo1_A 1unv_A 1uo0_A 1unt_A 1uo5_A 1unz_A 1unx_A 1unu_A 1unw_A 1uo4_A 1uo3_A 1uny_A 1u9f_A* ...
Probab=24.37 E-value=53 Score=19.32 Aligned_cols=19 Identities=26% Similarity=0.391 Sum_probs=13.2
Q ss_pred HHHHHHHHHHHHHHHHHhh
Q 027547 73 IKMLETKLKECKKRKESLQ 91 (222)
Q Consensus 73 Ik~Lq~~v~~L~~~~~~l~ 91 (222)
+++|+.+|++|-.++..|.
T Consensus 3 MnQLEdKvEeLl~~~~~L~ 21 (34)
T 2bni_A 3 MKQIEDKLEEILSKGHHIC 21 (34)
T ss_dssp CHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHccHHHH
Confidence 5677777777777666554
No 84
>1uo4_A General control protein GCN4; four helix bundle, cavity, iodobenzene; 1.70A {Saccharomyces cerevisiae} SCOP: h.1.3.1 PDB: 1uo3_A 1unt_A 1uo5_A 1unu_A 1unv_A 1uo1_A 2ccf_A 2cce_A 1unx_A 1unw_A 1w5j_A* 1w5k_A* 1u9f_A* 3f86_A* 3f87_A* 3hez_A* 3c3f_A*
Probab=23.99 E-value=55 Score=19.27 Aligned_cols=19 Identities=21% Similarity=0.244 Sum_probs=12.7
Q ss_pred HHHHHHHHHHHHHHHHHhh
Q 027547 73 IKMLETKLKECKKRKESLQ 91 (222)
Q Consensus 73 Ik~Lq~~v~~L~~~~~~l~ 91 (222)
+.+|+.+|++|-.++..|+
T Consensus 3 M~QLEdKVEeLl~~n~~Le 21 (34)
T 1uo4_A 3 MKQIEDKGEEILSKLYHIE 21 (34)
T ss_dssp CHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHhhHHHH
Confidence 4567777777777666554
No 85
>2wuj_A Septum site-determining protein diviva; bacterial cell division, septation, cell cycle, sporulation; 1.40A {Bacillus subtilis} PDB: 2wuk_A
Probab=22.86 E-value=98 Score=19.89 Aligned_cols=29 Identities=10% Similarity=0.129 Sum_probs=21.4
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 027547 63 PDQVDEAINYIKMLETKLKECKKRKESLQ 91 (222)
Q Consensus 63 ~~iL~~ai~YIk~Lq~~v~~L~~~~~~l~ 91 (222)
-.-|+..++-+..|.++..+|+.+.+.+.
T Consensus 26 D~FLd~v~~~~~~l~~e~~~L~~~~~~l~ 54 (57)
T 2wuj_A 26 NEFLAQVRKDYEIVLRKKTELEAKVNELD 54 (57)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHC--
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44588888888888888888888876554
No 86
>1p3q_Q VPS9P, vacuolar protein sorting-associated protein VPS9; trafficking, post translational modification, mono- ubiquitination; 1.70A {Saccharomyces cerevisiae} SCOP: a.5.2.4 PDB: 1mn3_A
Probab=22.63 E-value=69 Score=20.77 Aligned_cols=26 Identities=23% Similarity=0.443 Sum_probs=22.7
Q ss_pred HHHHHHHHHHHHHHHHHHhcCCCCCC
Q 027547 31 TIEKNRRDQMKNLYSTLKSLLPNQPS 56 (222)
Q Consensus 31 ~~ER~RR~~mn~~~~~LrsLlP~~~~ 56 (222)
.++|-+|...++-+.+|++..|+..+
T Consensus 3 ~a~~i~~~e~~~~~~~L~~MFP~lD~ 28 (54)
T 1p3q_Q 3 LIKKIEENERKDTLNTLQNMFPDMDP 28 (54)
T ss_dssp THHHHHHHHHHHHHHHHHHHSTTSCH
T ss_pred HHHHHHHHHHHHHHHHHHHHcccCCH
Confidence 46788899999999999999998764
No 87
>3p96_A Phosphoserine phosphatase SERB; ssgcid, structural genomics, structural genomics center for infectious disease, hydrolas; 2.05A {Mycobacterium avium}
Probab=21.42 E-value=3.9e+02 Score=22.97 Aligned_cols=75 Identities=11% Similarity=-0.051 Sum_probs=52.2
Q ss_pred eEEEEEEcCCCCChHHHHHHHHHhCCceEEEEEEEEeCCEEEEEEEEEeccCccccCHHHHHHHHHHHHhccccccccc
Q 027547 128 LEVILTSGVDDQFIFYEVIRILHQDGAEILNAKFSVVGNTIFHVIHAEIRDSMFGFGAAKISERLKGFVSGCASEGEMQ 206 (222)
Q Consensus 128 v~V~v~~~~~~~~~L~~vl~~Le~lgL~V~~a~~s~~~~~~~~ti~~kv~~~~~~~~~~~l~~aL~~~I~~~~~~~~~~ 206 (222)
..+.+....-.++.+.+|...|.++|+++.....-+......+.|++.+.. .+...+.++|.++....-....++
T Consensus 102 ~~~~llg~~~~~~~~~~i~~~l~~~~~Ni~~l~~~~~~~~~~~~~~v~~~~----~~~~~l~~~l~~l~~~~~vD~~v~ 176 (415)
T 3p96_A 102 HTIFVLGRPITAAAFGAVAREVAALGVNIDLIRGVSDYPVIGLELRVSVPP----GADEALRTALNRVSSEEHVDVAVE 176 (415)
T ss_dssp EEEEEEESSCCHHHHHHHHHHHHHTTCEEEEEEEEESSSSEEEEEEEECCT----TCHHHHHHHHHHHHHHHTCEEEEE
T ss_pred EEEEEEeCCCCHHHHHHHHHHHHHcCCCccceeeccCCCceEEEEEeeCCC----CCHHHHHHHHHHHhhhcCcCcccc
Confidence 345554432378999999999999999998888766444455556655443 467888888888877665555444
No 88
>2dtj_A Aspartokinase; protein-ligand complex, regulatory subunit, transferase; HET: CIT; 1.58A {Corynebacterium glutamicum} PDB: 3aaw_B* 3ab2_B 3ab4_B*
Probab=20.37 E-value=2.9e+02 Score=21.13 Aligned_cols=60 Identities=15% Similarity=0.016 Sum_probs=38.5
Q ss_pred eEEEEEEc--CCCCChHHHHHHHHHhCCceEEEEEEEEeCCEEEEEEEEEeccCccccCHHHHHHHHHHHHh
Q 027547 128 LEVILTSG--VDDQFIFYEVIRILHQDGAEILNAKFSVVGNTIFHVIHAEIRDSMFGFGAAKISERLKGFVS 197 (222)
Q Consensus 128 v~V~v~~~--~~~~~~L~~vl~~Le~lgL~V~~a~~s~~~~~~~~ti~~kv~~~~~~~~~~~l~~aL~~~I~ 197 (222)
-.|.|+.. ...||.+.+++++|.+.|+.|.-.+ +..-.+.+.| . .-+.+...++|.+.+.
T Consensus 96 a~VsvVG~gm~~~~Gv~arif~aLa~~~InI~~is--tSe~~Is~vV----~----~~d~~~Av~~Lh~~F~ 157 (178)
T 2dtj_A 96 GKVSLVGAGMKSHPGVTAEFMEALRDVNVNIELIS--TSEIRISVLI----R----EDDLDAAARALHEQFQ 157 (178)
T ss_dssp EEEEEEEECCTTCHHHHHHHHHHHHHTTCCCCEEE--EETTEEEEEE----E----GGGHHHHHHHHHHHHT
T ss_pred EEEEEEcCCcccCccHHHHHHHHHHHCCCCEEEEE--cCCCeEEEEE----e----HHHHHHHHHHHHHHHc
Confidence 34555442 4678999999999999999998765 3333333333 1 2356666666766554
No 89
>3k29_A Putative uncharacterized protein; YSCO, type III secretion apparatus, S genomics, csgid; HET: MSE; 2.00A {Chlamydia trachomatis}
Probab=20.34 E-value=2.6e+02 Score=22.20 Aligned_cols=56 Identities=16% Similarity=0.300 Sum_probs=38.3
Q ss_pred hhHHHHHHH-HHHHHHHHHHHhcCCCCCCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 027547 29 RKTIEKNRR-DQMKNLYSTLKSLLPNQPSKEELSLPDQVDEAINYIKMLETKLKECKKRKESL 90 (222)
Q Consensus 29 h~~~ER~RR-~~mn~~~~~LrsLlP~~~~~~k~si~~iL~~ai~YIk~Lq~~v~~L~~~~~~l 90 (222)
....||.++ .+-.+.+..||..+-.++. ++-+...-.||+-|.+++..++.+.++.
T Consensus 41 ~~e~~r~k~~~h~~~k~~qlre~~d~gtt------~~~i~~m~~yI~llrErea~lEqkVaeq 97 (169)
T 3k29_A 41 ERESERDKVKNHYMQKIRQLREQLDDGTT------SDAILKMKAYIKVVAIQLSEEEEKVNKQ 97 (169)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHCCC------HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcCCC------cHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345566543 3345568889988755443 3336778889999999999999876543
No 90
>2re1_A Aspartokinase, alpha and beta subunits; structural genomics, protein structure initiative, midwest center for structural genomics; 2.75A {Neisseria meningitidis MC58}
Probab=20.34 E-value=2.4e+02 Score=21.33 Aligned_cols=35 Identities=9% Similarity=0.076 Sum_probs=26.6
Q ss_pred eEEEEEEcCCCCChHHHHHHHHHhCCceEEEEEEE
Q 027547 128 LEVILTSGVDDQFIFYEVIRILHQDGAEILNAKFS 162 (222)
Q Consensus 128 v~V~v~~~~~~~~~L~~vl~~Le~lgL~V~~a~~s 162 (222)
..|.|..-.+++|.+.+|+++|.++|+.|.....+
T Consensus 26 ~~i~v~~~~~~~G~~~~if~~La~~~Invd~i~~s 60 (167)
T 2re1_A 26 ARINVRGVPDKPGVAYQILGAVADANIEVDMIIQN 60 (167)
T ss_dssp EEEEEEEEECCTTHHHHHHHHHHTTTCCCCCEEEC
T ss_pred EEEEEecCCCCcCHHHHHHHHHHHcCCeEEEEEcC
Confidence 44555422467999999999999999988777654
No 91
>3v86_A De novo design helix; computational design of A protein crystal, helical coil, DE designed helix, de novo protein; 2.91A {Synthetic}
Probab=20.23 E-value=87 Score=16.98 Aligned_cols=16 Identities=25% Similarity=0.372 Sum_probs=7.9
Q ss_pred HHHHHHHHHHHHHHHH
Q 027547 72 YIKMLETKLKECKKRK 87 (222)
Q Consensus 72 YIk~Lq~~v~~L~~~~ 87 (222)
|+-+|+.+|-+|+-+.
T Consensus 1 yvyqlkdevgelkgev 16 (27)
T 3v86_A 1 YVYQLKDEVGELKGEV 16 (27)
T ss_dssp CHHHHHHHHHHHHHHH
T ss_pred CcchhhHHHHHHHhHH
Confidence 4445555555555443
No 92
>2re1_A Aspartokinase, alpha and beta subunits; structural genomics, protein structure initiative, midwest center for structural genomics; 2.75A {Neisseria meningitidis MC58}
Probab=20.16 E-value=2.9e+02 Score=20.88 Aligned_cols=42 Identities=14% Similarity=0.091 Sum_probs=28.7
Q ss_pred EEEEEEc--CCCCChHHHHHHHHHhCCceEEEEEEEEeCCEEEEEE
Q 027547 129 EVILTSG--VDDQFIFYEVIRILHQDGAEILNAKFSVVGNTIFHVI 172 (222)
Q Consensus 129 ~V~v~~~--~~~~~~L~~vl~~Le~lgL~V~~a~~s~~~~~~~~ti 172 (222)
.|.|+.. ...+|.+.+++++|.+.|+.|...+ +....+.+.+
T Consensus 105 ~vsvvG~~m~~~~Gv~a~i~~aL~~~~InI~~is--tse~~is~vv 148 (167)
T 2re1_A 105 KVSAVGLGMRSHVGVAAKIFRTLAEEGINIQMIS--TSEIKVSVLI 148 (167)
T ss_dssp EEEEECSSCTTCCCHHHHHHHHHHHTTCCCCEEE--ECSSEEEEEE
T ss_pred EEEEECCCcCCCcCHHHHHHHHHHHCCCcEEEEE--cccCEEEEEE
Confidence 3444332 3578999999999999999998854 3344444333
Done!