BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 027549
(222 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2ELS|A Chain A, Solution Structure Of The 2nd C2h2 Zinc Finger Of Human
Zinc Finger Protein 406
Length = 36
Score = 29.6 bits (65), Expect = 1.5, Method: Composition-based stats.
Identities = 12/23 (52%), Positives = 14/23 (60%)
Query: 20 FSCIYCRKSFANHRSLRGHLRSH 42
F+C YC K F SL+ HLR H
Sbjct: 10 FTCEYCNKVFKFKHSLQAHLRIH 32
>pdb|2ENH|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
556- 588) Of Human Zinc Finger Protein 28 Homolog
Length = 46
Score = 28.9 bits (63), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 11/24 (45%), Positives = 16/24 (66%)
Query: 20 FSCIYCRKSFANHRSLRGHLRSHN 43
+ C CRK+F++H SL H R H+
Sbjct: 13 YECDVCRKAFSHHASLTQHQRVHS 36
>pdb|3UK3|C Chain C, Crystal Structure Of Znf217 Bound To Dna
pdb|3UK3|D Chain D, Crystal Structure Of Znf217 Bound To Dna
pdb|4F2J|C Chain C, Crystal Structure Of Znf217 Bound To Dna, P6522 Crystal
Form
pdb|4IS1|C Chain C, Crystal Structure Of Znf217 Bound To Dna
pdb|4IS1|D Chain D, Crystal Structure Of Znf217 Bound To Dna
Length = 57
Score = 28.5 bits (62), Expect = 2.8, Method: Composition-based stats.
Identities = 12/27 (44%), Positives = 17/27 (62%)
Query: 16 GTSAFSCIYCRKSFANHRSLRGHLRSH 42
G+S+ C YC K F ++ L HLR+H
Sbjct: 1 GSSSRECSYCGKFFRSNYYLNIHLRTH 27
>pdb|1ARE|A Chain A, Structures Of Dna-Binding Mutant Zinc Finger Domains:
Implications For Dna Binding
Length = 29
Score = 28.5 bits (62), Expect = 3.4, Method: Composition-based stats.
Identities = 10/24 (41%), Positives = 15/24 (62%)
Query: 19 AFSCIYCRKSFANHRSLRGHLRSH 42
+F C C ++FA +L+ H RSH
Sbjct: 2 SFVCEVCTRAFARQEALKRHYRSH 25
>pdb|2LVR|A Chain A, Solution Structure Of Miz-1 Zinc Finger 8
Length = 30
Score = 28.1 bits (61), Expect = 3.9, Method: Composition-based stats.
Identities = 9/23 (39%), Positives = 17/23 (73%)
Query: 20 FSCIYCRKSFANHRSLRGHLRSH 42
+ CI+C++ FA+ +L+ H+R H
Sbjct: 4 YVCIHCQRQFADPGALQRHVRIH 26
>pdb|2PYX|A Chain A, Crystal Structure Of Tryptophan Halogenase (Yp_750003.1)
From Shewanella Frigidimarina Ncimb 400 At 1.50 A
Resolution
pdb|2PYX|B Chain B, Crystal Structure Of Tryptophan Halogenase (Yp_750003.1)
From Shewanella Frigidimarina Ncimb 400 At 1.50 A
Resolution
Length = 526
Score = 28.1 bits (61), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 14/57 (24%), Positives = 28/57 (49%), Gaps = 4/57 (7%)
Query: 23 IYCRKSFANHRSLRG----HLRSHNVQLKAAWRRNCPSNSCASIGSASTIVDPLSSN 75
I +K+ N+ + G L + + +R C N+C +IG A+ ++PL ++
Sbjct: 307 IDAQKTLFNYLGVDGAAADKLEPRQLAINPGYRAKCWQNNCIAIGXAAGFIEPLEAS 363
>pdb|1ARD|A Chain A, Structures Of Dna-Binding Mutant Zinc Finger Domains:
Implications For Dna Binding
Length = 29
Score = 27.7 bits (60), Expect = 4.8, Method: Composition-based stats.
Identities = 10/24 (41%), Positives = 14/24 (58%)
Query: 19 AFSCIYCRKSFANHRSLRGHLRSH 42
+F C C ++FA L+ H RSH
Sbjct: 2 SFVCEVCTRAFARQEHLKRHYRSH 25
>pdb|1G2D|C Chain C, Structure Of A Cys2his2 Zinc FingerTATA BOX COMPLEX
(CLONE #2)
pdb|1G2D|F Chain F, Structure Of A Cys2his2 Zinc FingerTATA BOX COMPLEX
(CLONE #2)
Length = 90
Score = 27.3 bits (59), Expect = 6.3, Method: Compositional matrix adjust.
Identities = 10/30 (33%), Positives = 16/30 (53%)
Query: 13 LEKGTSAFSCIYCRKSFANHRSLRGHLRSH 42
+ G F C C ++F+ H L H+R+H
Sbjct: 28 IHTGQKPFQCRICMRNFSQHTGLNQHIRTH 57
>pdb|2ADR|A Chain A, Adr1 Dna-Binding Domain From Saccharomyces Cerevisiae,
Nmr, 25 Structures
Length = 60
Score = 27.3 bits (59), Expect = 6.3, Method: Composition-based stats.
Identities = 10/24 (41%), Positives = 14/24 (58%)
Query: 19 AFSCIYCRKSFANHRSLRGHLRSH 42
+F C C ++FA L+ H RSH
Sbjct: 2 SFVCEVCTRAFARQEHLKRHYRSH 25
>pdb|2EPZ|A Chain A, Solution Structure Of The 4th C2h2 Type Zinc Finger
Domain Of Zinc Finger Protein 28 Homolog
Length = 46
Score = 27.3 bits (59), Expect = 6.6, Method: Compositional matrix adjust.
Identities = 11/23 (47%), Positives = 14/23 (60%)
Query: 20 FSCIYCRKSFANHRSLRGHLRSH 42
F CI C K+F++H L H R H
Sbjct: 13 FDCIDCGKAFSDHIGLNQHRRIH 35
>pdb|2LT7|A Chain A, Solution Nmr Structure Of Kaiso Zinc Finger Dna Binding
Domain In Complex With Kaiso Binding Site Dna
pdb|4F6M|A Chain A, Crystal Structure Of Kaiso Zinc Finger Dna Binding
Domain In Complex With Kaiso Binding Site Dna
pdb|4F6N|A Chain A, Crystal Structure Of Kaiso Zinc Finger Dna Binding
Protein In Complex With Methylated Cpg Site Dna
Length = 133
Score = 26.9 bits (58), Expect = 8.5, Method: Compositional matrix adjust.
Identities = 14/52 (26%), Positives = 22/52 (42%), Gaps = 6/52 (11%)
Query: 11 ENLEKGTSAFSCIYCRKSFANHRSLRGHLRSHNVQLKAAWRRNCPSNSCASI 62
E + G + CI C++S+ SLR H H +W + P C +
Sbjct: 14 ELIVDGRVYYICIVCKRSYVCLTSLRRHFNIH------SWEKKYPCRYCEKV 59
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.316 0.130 0.385
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 6,270,326
Number of Sequences: 62578
Number of extensions: 236888
Number of successful extensions: 677
Number of sequences better than 100.0: 27
Number of HSP's better than 100.0 without gapping: 22
Number of HSP's successfully gapped in prelim test: 5
Number of HSP's that attempted gapping in prelim test: 646
Number of HSP's gapped (non-prelim): 36
length of query: 222
length of database: 14,973,337
effective HSP length: 95
effective length of query: 127
effective length of database: 9,028,427
effective search space: 1146610229
effective search space used: 1146610229
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 49 (23.5 bits)