BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 027552
(222 letters)
Database: nr
23,463,169 sequences; 8,064,228,071 total letters
Searching..................................................done
>gi|225457413|ref|XP_002284935.1| PREDICTED: uncharacterized protein LOC100255290 [Vitis vinifera]
Length = 235
Score = 249 bits (637), Expect = 4e-64, Method: Compositional matrix adjust.
Identities = 127/209 (60%), Positives = 152/209 (72%), Gaps = 23/209 (11%)
Query: 1 MAEEAAKELTES-----NAAAEDMDLEGGE-------------NGGDANAKRARDDD-DG 41
MAE E E+ A +DMD+E E GD+N+KR R++ +G
Sbjct: 1 MAETVVSETPETVTERETANTQDMDVEAPEPSQPNGSDSADNVTNGDSNSKRGREEAGEG 60
Query: 42 GEGNGDVSKKQKIDEDEKSVEEERLEKKEV-VNGSGRVKLGPKEFGSSIEMFDYFYKFLH 100
+ N V+KKQK+ EKSVEEERLEK E V +GR LGPK FGSS+EMFD+F+KFLH
Sbjct: 61 EDANDAVTKKQKV---EKSVEEERLEKLEAEVVETGRFSLGPKTFGSSVEMFDHFFKFLH 117
Query: 101 FWPPNLNVNKYEHMVLLDLLKKGHPEPDKKIGGGIQAFQVRYHPTYKSRCFFLIREDETA 160
+WP NL+VNKYEHM+LLDLLKKGH EPDKKIGGGI AFQVRYHP +KSRCFF+IR+DE+
Sbjct: 118 YWPANLDVNKYEHMMLLDLLKKGHTEPDKKIGGGIHAFQVRYHPVFKSRCFFVIRDDESV 177
Query: 161 DDFSFRKCVDHMLPLPEDMKVKSDANKAL 189
DDFSFRKCVDH+ PLPE+MK KS+ NKAL
Sbjct: 178 DDFSFRKCVDHISPLPENMKAKSEVNKAL 206
>gi|356508551|ref|XP_003523019.1| PREDICTED: uncharacterized protein LOC100804514 [Glycine max]
Length = 252
Score = 246 bits (629), Expect = 3e-63, Method: Compositional matrix adjust.
Identities = 131/215 (60%), Positives = 158/215 (73%), Gaps = 26/215 (12%)
Query: 1 MAEEAAKELTESNAAAE----DMDLEGGE---NGGDANAKRARDDDDGGEGNGDVSKKQK 53
MAEEAA E+ + N AA DMD+E E NG + N KRAR++++ G+ DVSKKQ+
Sbjct: 1 MAEEAALEVVDPNTAAAAAAVDMDVENVEAGGNGAEPNQKRAREEEEPQGGDDDVSKKQR 60
Query: 54 IDED-EKSVEEERLEKKEVVN------------------GSGRVKLGPKEFGSSIEMFDY 94
+DE+ EKSVEE+RLEK++ SG V LG K FGSS+EMF Y
Sbjct: 61 VDEENEKSVEEQRLEKRDEQEEEKGEEKEAEKEEEEEKEASGSVNLGFKSFGSSLEMFHY 120
Query: 95 FYKFLHFWPPNLNVNKYEHMVLLDLLKKGHPEPDKKIGGGIQAFQVRYHPTYKSRCFFLI 154
FY FLH WP LNVNKYEH++LL+LLK GH EPDKKIGGG++AFQVR HPT+KSRCFFLI
Sbjct: 121 FYNFLHTWPQYLNVNKYEHLMLLELLKNGHAEPDKKIGGGVRAFQVRKHPTFKSRCFFLI 180
Query: 155 REDETADDFSFRKCVDHMLPLPEDMKVKSDANKAL 189
RED++ADDFSFRKCVDH+LPLPE+M +KSDANKAL
Sbjct: 181 REDDSADDFSFRKCVDHILPLPEEMHLKSDANKAL 215
>gi|356516804|ref|XP_003527083.1| PREDICTED: uncharacterized protein LOC100796421 [Glycine max]
Length = 252
Score = 232 bits (592), Expect = 7e-59, Method: Compositional matrix adjust.
Identities = 123/212 (58%), Positives = 151/212 (71%), Gaps = 23/212 (10%)
Query: 1 MAEEAAKELTESNAAAE-------DMD---LEGGENGGDANAKRARDDDDGGEGNGDVSK 50
MAEEAA ++ + N DMD +E G+NG + N KRAR++++ + DV K
Sbjct: 1 MAEEAAPKVVDPNTVVAAAAAAAVDMDVENIEAGDNGAEPNQKRAREEEEPLGDDDDVLK 60
Query: 51 KQKI-DEDEKSVEEERLEKKEVVNG------------SGRVKLGPKEFGSSIEMFDYFYK 97
KQK+ +E E+SVEE+RLEK++ SG V LG K F SS EMF YFY
Sbjct: 61 KQKVAEEKEQSVEEQRLEKRDEKEEKEAEKEEEEKEASGSVNLGFKSFVSSSEMFHYFYN 120
Query: 98 FLHFWPPNLNVNKYEHMVLLDLLKKGHPEPDKKIGGGIQAFQVRYHPTYKSRCFFLIRED 157
FLH WP LNVNKYEH++LL+LLK GH EPDKKIGGG++AFQVR HPT+KSRCFFLIRED
Sbjct: 121 FLHTWPQYLNVNKYEHLMLLELLKNGHAEPDKKIGGGVRAFQVRKHPTFKSRCFFLIRED 180
Query: 158 ETADDFSFRKCVDHMLPLPEDMKVKSDANKAL 189
++ADDFSFRKCVDH+LPLPE+M +K DANKAL
Sbjct: 181 DSADDFSFRKCVDHILPLPEEMHLKFDANKAL 212
>gi|255547391|ref|XP_002514753.1| conserved hypothetical protein [Ricinus communis]
gi|223546357|gb|EEF47859.1| conserved hypothetical protein [Ricinus communis]
Length = 224
Score = 231 bits (589), Expect = 2e-58, Method: Compositional matrix adjust.
Identities = 130/199 (65%), Positives = 149/199 (74%), Gaps = 21/199 (10%)
Query: 1 MAEEAAKELTESN-----AAAEDMDL--EGGENGGDANAKRARDDDDGGEGNGDVSKKQK 53
MAEE A E T++N + EDMD+ E NG AKR RD ++ + + DVSKKQK
Sbjct: 1 MAEEKATEPTQANQERVDSTTEDMDVAEESAANG----AKRVRDSEEE-QNDDDVSKKQK 55
Query: 54 IDEDEKSVEEERLEKKEVVNG------SGRVKLGPKEFGSSIEMFDYFYKFLHFWPPNLN 107
+D KSVEEERLEK E G S V LGPK FGSS+EMFDYFY LH+WPPNL
Sbjct: 56 VD---KSVEEERLEKLEEGEGEEDKEESVPVSLGPKSFGSSVEMFDYFYNLLHYWPPNLT 112
Query: 108 VNKYEHMVLLDLLKKGHPEPDKKIGGGIQAFQVRYHPTYKSRCFFLIREDETADDFSFRK 167
VNKYEHMVLL+LLKKGH +P+KKIGGGIQAFQVRYHP +KSRCFFLIR+D+T DDFSFRK
Sbjct: 113 VNKYEHMVLLELLKKGHSDPEKKIGGGIQAFQVRYHPMWKSRCFFLIRDDDTMDDFSFRK 172
Query: 168 CVDHMLPLPEDMKVKSDAN 186
CVD +LPLPEDMK+KSD N
Sbjct: 173 CVDKILPLPEDMKIKSDGN 191
>gi|224131056|ref|XP_002328442.1| predicted protein [Populus trichocarpa]
gi|222838157|gb|EEE76522.1| predicted protein [Populus trichocarpa]
Length = 250
Score = 230 bits (587), Expect = 3e-58, Method: Compositional matrix adjust.
Identities = 127/220 (57%), Positives = 146/220 (66%), Gaps = 43/220 (19%)
Query: 1 MAEEAAKELTESN-----AAAEDMDLEGGENGGDANAKRARDDDDGGEGNGDVSKKQKID 55
MAEE E E+N A E+MD+ E+ AKRAR+ ++ E N DV KKQK+D
Sbjct: 1 MAEEIVAEAIEANLERADTATEEMDM--VEDVAANGAKRAREGEE--EDNEDVEKKQKVD 56
Query: 56 EDEKSVEEERLEKKEVVN-------------------------------GSGRVKLGPKE 84
KSVEEERLEK E SG V+LG K
Sbjct: 57 ---KSVEEERLEKLEGEGTGEGEEKKEEERPDKLEGEGTGEGEEKKEKENSGPVRLGLKS 113
Query: 85 FGSSIEMFDYFYKFLHFWPPNLNVNKYEHMVLLDLLKKGHPEPDKKIGGGIQAFQVRYHP 144
FGS++EMFDYFY FLH+WPPNLNVNKYE MVLLDLLK+GH EPDKKIGGGIQ FQVR+HP
Sbjct: 114 FGSAVEMFDYFYNFLHYWPPNLNVNKYEQMVLLDLLKRGHTEPDKKIGGGIQTFQVRFHP 173
Query: 145 TYKSRCFFLIREDETADDFSFRKCVDHMLPLPEDMKVKSD 184
+KSRCFFLIR+DE+ DDFSFRKCVDH+LPLPEDMK+KSD
Sbjct: 174 MFKSRCFFLIRDDESVDDFSFRKCVDHILPLPEDMKIKSD 213
>gi|449477258|ref|XP_004154974.1| PREDICTED: uncharacterized protein LOC101228008 [Cucumis sativus]
Length = 232
Score = 221 bits (563), Expect = 2e-55, Method: Compositional matrix adjust.
Identities = 123/215 (57%), Positives = 147/215 (68%), Gaps = 35/215 (16%)
Query: 1 MAEEAAKELTE--SNAAAEDMDLEGGEN----------------GGDANAKRARDDD-DG 41
MAEE +L +N+ EDM+LE E GDA +KR R++ D
Sbjct: 1 MAEETIPQLDPEVTNSGTEDMELETTEPKASTDASEANEAAPVINGDATSKREREESADD 60
Query: 42 GEGNGDVSKKQKIDEDEKSVEEERLEKKEVVNGSGR-------VKLGPKEFGSSIEMFDY 94
G +G KKQKI EKSVEEERLEK + G G+ V LGPK F SS+E+FDY
Sbjct: 61 GVADG---KKQKI---EKSVEEERLEK---LGGDGKCEEEPVPVSLGPKSFRSSVELFDY 111
Query: 95 FYKFLHFWPPNLNVNKYEHMVLLDLLKKGHPEPDKKIGGGIQAFQVRYHPTYKSRCFFLI 154
FYK LH WP NLNVN+YE MVL+DLLKKGH EP+KKIG GI +FQ+R+HP +KS+CFFLI
Sbjct: 112 FYKILHHWPVNLNVNQYEQMVLVDLLKKGHLEPEKKIGCGIHSFQIRFHPEWKSKCFFLI 171
Query: 155 REDETADDFSFRKCVDHMLPLPEDMKVKSDANKAL 189
REDE+ADDFSFRKCVDH+LPLPE+ K K DAN+AL
Sbjct: 172 REDESADDFSFRKCVDHILPLPENFKGKFDANRAL 206
>gi|351724155|ref|NP_001236280.1| uncharacterized protein LOC100305757 [Glycine max]
gi|255626533|gb|ACU13611.1| unknown [Glycine max]
Length = 206
Score = 214 bits (546), Expect = 2e-53, Method: Compositional matrix adjust.
Identities = 114/197 (57%), Positives = 138/197 (70%), Gaps = 24/197 (12%)
Query: 1 MAEEAAKEL-----TESNAAAEDMDLEGGENGGDANAKRARDDDDGGEGNGDVSKKQKID 55
MAE A EL T +NAAA D+ ++G E +N KR R+D D E VSKKQK+D
Sbjct: 3 MAEATASELEIVEPTTTNAAAADVAVDGVE----SNLKRTREDSDDEEDG--VSKKQKVD 56
Query: 56 EDEKSVEEERLEKKEVVNGSGRVKLGPKEFGSSIEMFDYFYKFLHFWPPNLNVNKYEHMV 115
+EK SG VKLG K F SS+EMFDYFY LH WP LN+N+YEHM+
Sbjct: 57 AEEK-------------KASGPVKLGFKSFASSVEMFDYFYNLLHAWPAYLNLNQYEHMM 103
Query: 116 LLDLLKKGHPEPDKKIGGGIQAFQVRYHPTYKSRCFFLIREDETADDFSFRKCVDHMLPL 175
LL+LLK GH EPD KIGGGI+ FQVR HP +KSRCFFL+R+DE+ DDFSFRKCVDH+LPL
Sbjct: 104 LLELLKNGHTEPDTKIGGGIRVFQVRKHPMWKSRCFFLVRDDESVDDFSFRKCVDHILPL 163
Query: 176 PEDMKVKSDANKALGGG 192
P++M+V+ DAN+ALGG
Sbjct: 164 PQEMQVRPDANRALGGA 180
>gi|356565099|ref|XP_003550782.1| PREDICTED: uncharacterized protein LOC100810172 [Glycine max]
Length = 208
Score = 210 bits (534), Expect = 3e-52, Method: Compositional matrix adjust.
Identities = 112/195 (57%), Positives = 130/195 (66%), Gaps = 22/195 (11%)
Query: 1 MAEEAAKE---LTESNAAAEDMDLEGGENGGDANAKRARDDDDGGEGNGDVSKKQKIDED 57
MAE A E + + AA D +G D+N KR R D D E VSKK+K+DE+
Sbjct: 1 MAEATASEPEIVEPTTMAAADTAF----DGVDSNQKRTRVDSDDEEDG--VSKKRKVDEE 54
Query: 58 EKSVEEERLEKKEVVNGSGRVKLGPKEFGSSIEMFDYFYKFLHFWPPNLNVNKYEHMVLL 117
EK SG VKLG K F SS+EMFDYFY LH WPP N+N+YEHM+LL
Sbjct: 55 EK-------------EPSGPVKLGFKSFASSLEMFDYFYNLLHAWPPFQNLNQYEHMMLL 101
Query: 118 DLLKKGHPEPDKKIGGGIQAFQVRYHPTYKSRCFFLIREDETADDFSFRKCVDHMLPLPE 177
+LLK GH EPD KIGGGI FQVR HP +KSRCFFL+RE E+ DDFSF KCVDH+LPLPE
Sbjct: 102 ELLKNGHTEPDTKIGGGICVFQVRKHPMWKSRCFFLVREGESVDDFSFHKCVDHILPLPE 161
Query: 178 DMKVKSDANKALGGG 192
+M+VK DAN ALGGG
Sbjct: 162 EMQVKPDANMALGGG 176
>gi|297797213|ref|XP_002866491.1| hypothetical protein ARALYDRAFT_496421 [Arabidopsis lyrata subsp.
lyrata]
gi|297312326|gb|EFH42750.1| hypothetical protein ARALYDRAFT_496421 [Arabidopsis lyrata subsp.
lyrata]
Length = 203
Score = 201 bits (510), Expect = 2e-49, Method: Compositional matrix adjust.
Identities = 106/186 (56%), Positives = 132/186 (70%), Gaps = 23/186 (12%)
Query: 1 MAEEAAKELTESNAAAE------DMDLEGGENGGDANAKRARDDDDGGEGNGDVSKKQKI 54
MAE+ +E+ +S +A DM++EG + ++ ++ E NG SKKQK+
Sbjct: 1 MAEQ--QEILDSVSAQVNPDQKVDMEVEGVAPKAETGDEKREREETEEEENGGESKKQKV 58
Query: 55 DEDEKSVEEERLEKKEVVNGSGRVKLGPKEFGSSIEMFDYFYKFLHFWPPNLNVNKYEHM 114
E+EKS G VKLGPKEF +S+ MFDYF KFLHFWP +L+VNKYEHM
Sbjct: 59 AEEEKS---------------GPVKLGPKEFVTSVAMFDYFVKFLHFWPTDLDVNKYEHM 103
Query: 115 VLLDLLKKGHPEPDKKIGGGIQAFQVRYHPTYKSRCFFLIREDETADDFSFRKCVDHMLP 174
VLLDL+KKGH EP+KKIGGGI+ FQVR HP +KSRCFFL+RED+TADDFSFRKCVDH+LP
Sbjct: 104 VLLDLIKKGHSEPEKKIGGGIKTFQVRTHPMWKSRCFFLVREDDTADDFSFRKCVDHILP 163
Query: 175 LPEDMK 180
LPE+MK
Sbjct: 164 LPENMK 169
>gi|224123172|ref|XP_002319012.1| predicted protein [Populus trichocarpa]
gi|222857388|gb|EEE94935.1| predicted protein [Populus trichocarpa]
Length = 160
Score = 199 bits (506), Expect = 6e-49, Method: Compositional matrix adjust.
Identities = 98/167 (58%), Positives = 126/167 (75%), Gaps = 8/167 (4%)
Query: 56 EDEKSVEEERLEKKEVVNGSGRVKLGPKEFGSSIEMFDYFYKFLHFWPPNLNVNKYEHMV 115
E+E+ V ++++K+E V G V+LGPK F S++EMFD+FY FLHFWPPNLNVNK+EHMV
Sbjct: 2 EEEQFVRFKKMKKQEEV---GPVRLGPKTFVSAVEMFDFFYNFLHFWPPNLNVNKFEHMV 58
Query: 116 LLDLLKKGHPEPDKKIGGGIQAFQVRYHPTYKSRCFFLIREDETADDFSFRKCVDHMLPL 175
L++LL + H EP+KKIG GIQAFQ+R+ P +K+RC FLI +DE DDFSF K D++LPL
Sbjct: 59 LVELLMQDHLEPEKKIGCGIQAFQLRFRPMWKTRCIFLIWDDEFVDDFSFWKRTDNILPL 118
Query: 176 PEDMKVKSDANKALGGGGGGKGRGGGRGGHGHGKGGHGRGRGGKSRN 222
PEDM++KSDA+ + GGG K +GGG G H GRGGKSRN
Sbjct: 119 PEDMRIKSDASLSSGGGKSRKRKGGGV-----RIGEHNHGRGGKSRN 160
>gi|30697677|ref|NP_201050.2| uncharacterized protein [Arabidopsis thaliana]
gi|20385491|gb|AAM21312.1|AF371327_1 EMB514 [Arabidopsis thaliana]
gi|21593438|gb|AAM65405.1| unknown [Arabidopsis thaliana]
gi|30793885|gb|AAP40395.1| unknown protein [Arabidopsis thaliana]
gi|30794104|gb|AAP40494.1| unknown protein [Arabidopsis thaliana]
gi|51968752|dbj|BAD43068.1| unnamed protein product [Arabidopsis thaliana]
gi|110739286|dbj|BAF01556.1| hypothetical protein [Arabidopsis thaliana]
gi|332010225|gb|AED97608.1| uncharacterized protein [Arabidopsis thaliana]
Length = 202
Score = 198 bits (503), Expect = 1e-48, Method: Compositional matrix adjust.
Identities = 105/187 (56%), Positives = 130/187 (69%), Gaps = 23/187 (12%)
Query: 1 MAEEAAKELTESNAA------AEDMDLEGGENGGDANAKRARDDDDGGEGNGDVSKKQKI 54
MAEE +E+ +S +A DM++E + ++ ++ E NG SKKQK+
Sbjct: 1 MAEE--QEIVDSLSAEVNPDQKVDMEVETATPKAETGDEKREREETEEEENGGESKKQKV 58
Query: 55 DEDEKSVEEERLEKKEVVNGSGRVKLGPKEFGSSIEMFDYFYKFLHFWPPNLNVNKYEHM 114
E+EKS G VKLGPKEF +S+ MFDYF KFLHFWP +L+VNKYEHM
Sbjct: 59 GEEEKS---------------GPVKLGPKEFVTSVAMFDYFVKFLHFWPTDLDVNKYEHM 103
Query: 115 VLLDLLKKGHPEPDKKIGGGIQAFQVRYHPTYKSRCFFLIREDETADDFSFRKCVDHMLP 174
VLLDL+KKGH EP+KKIGGGI+ FQVR HP +KSRCFFL+RED+TADDFSFRKCVD +LP
Sbjct: 104 VLLDLIKKGHSEPEKKIGGGIKTFQVRTHPMWKSRCFFLVREDDTADDFSFRKCVDQILP 163
Query: 175 LPEDMKV 181
LPE+MK
Sbjct: 164 LPENMKT 170
>gi|224125262|ref|XP_002319542.1| predicted protein [Populus trichocarpa]
gi|222857918|gb|EEE95465.1| predicted protein [Populus trichocarpa]
Length = 232
Score = 192 bits (487), Expect = 1e-46, Method: Compositional matrix adjust.
Identities = 114/199 (57%), Positives = 138/199 (69%), Gaps = 17/199 (8%)
Query: 1 MAEEAAKELTESN---AAAEDMDLEGGENGGDANAKRARDDDDGGEGNGDVSKKQKIDED 57
M EE E E+N A + +D++ E+ + KRAR+ E N D+ KKQK+D+
Sbjct: 1 MVEETVAEAIEANLERADSATVDMDMVEDVAENGVKRAREG--EEEENEDLLKKQKVDKS 58
Query: 58 ------------EKSVEEERLEKKEVVNGSGRVKLGPKEFGSSIEMFDYFYKFLHFWPPN 105
+ EE+ EKKE SG V LGPK FGS++EMFDYFY FLH WPPN
Sbjct: 59 VEEERLEKLEEEGEGEGEEKEEKKEEEEKSGPVSLGPKSFGSAVEMFDYFYNFLHQWPPN 118
Query: 106 LNVNKYEHMVLLDLLKKGHPEPDKKIGGGIQAFQVRYHPTYKSRCFFLIREDETADDFSF 165
+ VNKYEHMVL+DLLK GH EPDKKIG GIQAFQVR+HP +KSRC FLIR+D++ DDFSF
Sbjct: 119 IKVNKYEHMVLVDLLKTGHSEPDKKIGSGIQAFQVRFHPRFKSRCLFLIRDDDSVDDFSF 178
Query: 166 RKCVDHMLPLPEDMKVKSD 184
RKCVDH+LPLPED+KVKSD
Sbjct: 179 RKCVDHILPLPEDLKVKSD 197
>gi|297733973|emb|CBI15220.3| unnamed protein product [Vitis vinifera]
Length = 128
Score = 181 bits (459), Expect = 2e-43, Method: Compositional matrix adjust.
Identities = 79/99 (79%), Positives = 91/99 (91%)
Query: 91 MFDYFYKFLHFWPPNLNVNKYEHMVLLDLLKKGHPEPDKKIGGGIQAFQVRYHPTYKSRC 150
MFD+F+KFLH+WP NL+VNKYEHM+LLDLLKKGH EPDKKIGGGI AFQVRYHP +KSRC
Sbjct: 1 MFDHFFKFLHYWPANLDVNKYEHMMLLDLLKKGHTEPDKKIGGGIHAFQVRYHPVFKSRC 60
Query: 151 FFLIREDETADDFSFRKCVDHMLPLPEDMKVKSDANKAL 189
FF+IR+DE+ DDFSFRKCVDH+ PLPE+MK KS+ NKAL
Sbjct: 61 FFVIRDDESVDDFSFRKCVDHISPLPENMKAKSEVNKAL 99
>gi|242041947|ref|XP_002468368.1| hypothetical protein SORBIDRAFT_01g044760 [Sorghum bicolor]
gi|241922222|gb|EER95366.1| hypothetical protein SORBIDRAFT_01g044760 [Sorghum bicolor]
Length = 245
Score = 169 bits (427), Expect = 1e-39, Method: Compositional matrix adjust.
Identities = 75/119 (63%), Positives = 92/119 (77%)
Query: 63 EERLEKKEVVNGSGRVKLGPKEFGSSIEMFDYFYKFLHFWPPNLNVNKYEHMVLLDLLKK 122
EE E+K V VKLGPKEF S++EMFDYF+ LH W P L NKYE +VL DLLKK
Sbjct: 85 EEANEEKAVEADGKPVKLGPKEFASAVEMFDYFFALLHSWTPQLEFNKYEQLVLEDLLKK 144
Query: 123 GHPEPDKKIGGGIQAFQVRYHPTYKSRCFFLIREDETADDFSFRKCVDHMLPLPEDMKV 181
GH +P KKIG G++AF++R HP ++SRCFF+ R D +ADDFSFRKCVD++LPLPEDMK+
Sbjct: 145 GHADPAKKIGAGVEAFEIRNHPVWQSRCFFVRRTDGSADDFSFRKCVDNILPLPEDMKI 203
>gi|357113694|ref|XP_003558636.1| PREDICTED: uncharacterized protein LOC100825450 [Brachypodium
distachyon]
Length = 236
Score = 168 bits (426), Expect = 1e-39, Method: Compositional matrix adjust.
Identities = 80/142 (56%), Positives = 105/142 (73%), Gaps = 12/142 (8%)
Query: 50 KKQKIDEDEKSVEEERLEK-KEVVNGSGR-----------VKLGPKEFGSSIEMFDYFYK 97
KK +++E+ K VEE+ +E+ + V G G VKLGPKEF SS++MFDYF+
Sbjct: 50 KKPRLEEEAKDVEEKGVEEGAKDVEGKGEEEGAKGEDGKPVKLGPKEFASSVDMFDYFFA 109
Query: 98 FLHFWPPNLNVNKYEHMVLLDLLKKGHPEPDKKIGGGIQAFQVRYHPTYKSRCFFLIRED 157
LH W P L +NKYEHMVL DL+KKGH EP KKIG G++AF++R HP ++SRCFF+ R D
Sbjct: 110 LLHSWTPQLEINKYEHMVLEDLVKKGHAEPSKKIGAGVEAFEIRNHPVWQSRCFFVRRVD 169
Query: 158 ETADDFSFRKCVDHMLPLPEDM 179
++DDFSFRKCVD++LPLPED+
Sbjct: 170 GSSDDFSFRKCVDNILPLPEDL 191
>gi|115451211|ref|NP_001049206.1| Os03g0187000 [Oryza sativa Japonica Group]
gi|108706571|gb|ABF94366.1| expressed protein [Oryza sativa Japonica Group]
gi|113547677|dbj|BAF11120.1| Os03g0187000 [Oryza sativa Japonica Group]
gi|215765454|dbj|BAG87151.1| unnamed protein product [Oryza sativa Japonica Group]
gi|218192224|gb|EEC74651.1| hypothetical protein OsI_10304 [Oryza sativa Indica Group]
gi|222624329|gb|EEE58461.1| hypothetical protein OsJ_09703 [Oryza sativa Japonica Group]
Length = 232
Score = 168 bits (425), Expect = 2e-39, Method: Compositional matrix adjust.
Identities = 72/109 (66%), Positives = 89/109 (81%)
Query: 78 VKLGPKEFGSSIEMFDYFYKFLHFWPPNLNVNKYEHMVLLDLLKKGHPEPDKKIGGGIQA 137
VKLGPKEF + +EMFDYF+ LH W P L +NKYEHMVL DLLKKGH E D+KIG GI+A
Sbjct: 88 VKLGPKEFATGVEMFDYFFALLHSWAPQLEINKYEHMVLEDLLKKGHAESDRKIGAGIEA 147
Query: 138 FQVRYHPTYKSRCFFLIREDETADDFSFRKCVDHMLPLPEDMKVKSDAN 186
F++R HP ++SRCFF+ R D ++DDFSFRKCVD +LPLPEDMK+ + +N
Sbjct: 148 FEIRNHPVFQSRCFFVRRVDGSSDDFSFRKCVDSILPLPEDMKIGNKSN 196
>gi|149391989|gb|ABR25889.1| unknown [Oryza sativa Indica Group]
Length = 150
Score = 166 bits (419), Expect = 9e-39, Method: Compositional matrix adjust.
Identities = 72/109 (66%), Positives = 89/109 (81%)
Query: 78 VKLGPKEFGSSIEMFDYFYKFLHFWPPNLNVNKYEHMVLLDLLKKGHPEPDKKIGGGIQA 137
VKLGPKEF + +EMFDYF+ LH W P L +NKYEHMVL DLLKKGH E D+KIG GI+A
Sbjct: 6 VKLGPKEFATGVEMFDYFFALLHSWAPQLEINKYEHMVLEDLLKKGHAESDRKIGAGIEA 65
Query: 138 FQVRYHPTYKSRCFFLIREDETADDFSFRKCVDHMLPLPEDMKVKSDAN 186
F++R HP ++SRCFF+ R D ++DDFSFRKCVD +LPLPEDMK+ + +N
Sbjct: 66 FEIRNHPVFQSRCFFVRRVDGSSDDFSFRKCVDSILPLPEDMKIGNKSN 114
>gi|226493472|ref|NP_001144806.1| uncharacterized protein LOC100277882 [Zea mays]
gi|195647074|gb|ACG43005.1| hypothetical protein [Zea mays]
gi|195647258|gb|ACG43097.1| hypothetical protein [Zea mays]
gi|195649081|gb|ACG44008.1| hypothetical protein [Zea mays]
gi|224035873|gb|ACN37012.1| unknown [Zea mays]
gi|413956786|gb|AFW89435.1| hypothetical protein ZEAMMB73_275111 [Zea mays]
Length = 235
Score = 162 bits (409), Expect = 1e-37, Method: Compositional matrix adjust.
Identities = 91/200 (45%), Positives = 114/200 (57%), Gaps = 45/200 (22%)
Query: 14 AAAEDMDLEGGENGGDANAKRARDD--------DDGGEGNGDVSKKQKI----------- 54
AA M+ E E G KR RD+ + +KK K+
Sbjct: 9 AADTAMETEAPEAAGQ---KRERDEVGDPAAEGGEAAVEEAAAAKKPKLEEETKEVEEAS 65
Query: 55 -------------DEDEKSVEEERLEKKEVVNGSGRVKLGPKEFGSSIEMFDYFYKFLHF 101
+ +EK+VE ER VKLGPKEF SS+EMFDYF+ LH+
Sbjct: 66 EEKAEETAEGKTEEANEKTVEAER----------KPVKLGPKEFSSSVEMFDYFFGLLHY 115
Query: 102 WPPNLNVNKYEHMVLLDLLKKGHPEPDKKIGGGIQAFQVRYHPTYKSRCFFLIREDETAD 161
W P + NKYE MVL DLLKKGH EP KKIG G++AF++R HP ++SRCFF+ R D ++D
Sbjct: 116 WTPQIEFNKYEQMVLEDLLKKGHAEPAKKIGAGVEAFEIRNHPVWQSRCFFIRRIDGSSD 175
Query: 162 DFSFRKCVDHMLPLPEDMKV 181
DFSFRKCVD++LPLPEDMKV
Sbjct: 176 DFSFRKCVDNILPLPEDMKV 195
>gi|357477551|ref|XP_003609061.1| hypothetical protein MTR_4g108450 [Medicago truncatula]
gi|355510116|gb|AES91258.1| hypothetical protein MTR_4g108450 [Medicago truncatula]
Length = 195
Score = 158 bits (400), Expect = 1e-36, Method: Compositional matrix adjust.
Identities = 101/202 (50%), Positives = 121/202 (59%), Gaps = 48/202 (23%)
Query: 1 MAEEAAKE--LTESNA-AAEDMDLEGGE----------NGGDANAKRARDDDDGGEGNGD 47
M E AA E + ESNA A DM +E E ++N KRARDDD+
Sbjct: 1 MTETAAPEPQIVESNATVAVDMVIENAELAEVTAIDSEANDESNQKRARDDDEKR----- 55
Query: 48 VSKKQKIDEDEKSVEEERLEKKEVVNGSGRVKLGPKEFGSSIEMFDYFYKFLHFWPPNLN 107
V+KKQK++ + + EE EKK GP +FDYF FLH W PNLN
Sbjct: 56 VTKKQKVEAEVEEDEEGEEEKKPS---------GP--------LFDYFNSFLHAWGPNLN 98
Query: 108 VNKYEHMVLLDLLKKGHPEPDKKIGGGIQAFQVRYHPTYKSRCFFLIREDETADDFSFRK 167
VNKYEH +LL+LL KGHPEPD+KIGG I+AFQVR +EDE+ADDFSFRK
Sbjct: 99 VNKYEHTMLLELLMKGHPEPDQKIGGKIRAFQVR-------------KEDESADDFSFRK 145
Query: 168 CVDHMLPLPEDMKVKSDANKAL 189
CVDH+LPLPE M+VK DAN+AL
Sbjct: 146 CVDHILPLPEAMQVKHDANRAL 167
>gi|226505600|ref|NP_001145212.1| uncharacterized protein LOC100278469 [Zea mays]
gi|195652703|gb|ACG45819.1| hypothetical protein [Zea mays]
Length = 261
Score = 157 bits (396), Expect = 4e-36, Method: Compositional matrix adjust.
Identities = 83/180 (46%), Positives = 114/180 (63%), Gaps = 10/180 (5%)
Query: 2 AEEAAKELTESNAAAEDMDLEGGENGGDANAKRARDDDDGGEGNGDVSKKQKIDEDEKSV 61
A+EA K E A + +AN ++A + +D + ++K+ ++ + K V
Sbjct: 52 AKEAEKGRVEETAEGKTQ---------EANEEKAVEAEDKP-VTEEANEKKAVEAEGKPV 101
Query: 62 EEERLEKKEVVNGSGRVKLGPKEFGSSIEMFDYFYKFLHFWPPNLNVNKYEHMVLLDLLK 121
+E E+K VKLGPKEF S+I+MF+YFY LH W P L NKYE MVL DLL+
Sbjct: 102 TQEANEEKAAEAEGKPVKLGPKEFASAIDMFNYFYALLHSWTPQLEFNKYEQMVLEDLLR 161
Query: 122 KGHPEPDKKIGGGIQAFQVRYHPTYKSRCFFLIREDETADDFSFRKCVDHMLPLPEDMKV 181
KGH EP KKIG G++AF++ HP ++S CFF+ R D + DDFSFRKCVD++LPLPED K+
Sbjct: 162 KGHAEPAKKIGAGVEAFEIGNHPVWRSHCFFVRRTDGSVDDFSFRKCVDNILPLPEDFKI 221
>gi|108706572|gb|ABF94367.1| expressed protein [Oryza sativa Japonica Group]
Length = 132
Score = 145 bits (367), Expect = 9e-33, Method: Compositional matrix adjust.
Identities = 63/96 (65%), Positives = 78/96 (81%)
Query: 91 MFDYFYKFLHFWPPNLNVNKYEHMVLLDLLKKGHPEPDKKIGGGIQAFQVRYHPTYKSRC 150
MFDYF+ LH W P L +NKYEHMVL DLLKKGH E D+KIG GI+AF++R HP ++SRC
Sbjct: 1 MFDYFFALLHSWAPQLEINKYEHMVLEDLLKKGHAESDRKIGAGIEAFEIRNHPVFQSRC 60
Query: 151 FFLIREDETADDFSFRKCVDHMLPLPEDMKVKSDAN 186
FF+ R D ++DDFSFRKCVD +LPLPEDMK+ + +N
Sbjct: 61 FFVRRVDGSSDDFSFRKCVDSILPLPEDMKIGNKSN 96
>gi|302791293|ref|XP_002977413.1| hypothetical protein SELMODRAFT_417447 [Selaginella moellendorffii]
gi|300154783|gb|EFJ21417.1| hypothetical protein SELMODRAFT_417447 [Selaginella moellendorffii]
Length = 248
Score = 141 bits (355), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 60/103 (58%), Positives = 81/103 (78%), Gaps = 1/103 (0%)
Query: 78 VKLGPKEFGSSIEMFDYFYKFLHFWPPNLNVNKYEHMVLLDLLKKGHPEPDKKIG-GGIQ 136
VKLGP F S EMF YFY+ LH W + ++N+YEHMVLLDLL KGH +P+ K+G GG +
Sbjct: 94 VKLGPMTFSSGKEMFMYFYELLHGWAADYDMNEYEHMVLLDLLNKGHNDPEAKMGPGGAK 153
Query: 137 AFQVRYHPTYKSRCFFLIREDETADDFSFRKCVDHMLPLPEDM 179
AFQ+R HP ++SRC++L+R D TA DFS+RKCVD ++PLP+++
Sbjct: 154 AFQIRVHPVWRSRCYYLVRADGTAVDFSYRKCVDKLMPLPQEI 196
>gi|302786450|ref|XP_002974996.1| hypothetical protein SELMODRAFT_442719 [Selaginella moellendorffii]
gi|300157155|gb|EFJ23781.1| hypothetical protein SELMODRAFT_442719 [Selaginella moellendorffii]
Length = 249
Score = 141 bits (355), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 60/103 (58%), Positives = 81/103 (78%), Gaps = 1/103 (0%)
Query: 78 VKLGPKEFGSSIEMFDYFYKFLHFWPPNLNVNKYEHMVLLDLLKKGHPEPDKKIG-GGIQ 136
VKLGP F S EMF YFY+ LH W + ++N+YEHMVLLDLL KGH +P+ K+G GG +
Sbjct: 95 VKLGPMTFSSGKEMFMYFYELLHGWAADYDMNEYEHMVLLDLLNKGHNDPEAKMGPGGAK 154
Query: 137 AFQVRYHPTYKSRCFFLIREDETADDFSFRKCVDHMLPLPEDM 179
AFQ+R HP ++SRC++L+R D TA DFS+RKCVD ++PLP+++
Sbjct: 155 AFQIRVHPVWRSRCYYLVRADGTAVDFSYRKCVDKLMPLPQEI 197
>gi|147782362|emb|CAN70579.1| hypothetical protein VITISV_004014 [Vitis vinifera]
Length = 101
Score = 137 bits (345), Expect = 3e-30, Method: Compositional matrix adjust.
Identities = 61/76 (80%), Positives = 69/76 (90%)
Query: 114 MVLLDLLKKGHPEPDKKIGGGIQAFQVRYHPTYKSRCFFLIREDETADDFSFRKCVDHML 173
M+LLDLLKKGH EPDKKIGGGI AFQVRYHP +KSRCFF+IR+DE+ DDFSFRKCVDH+
Sbjct: 1 MMLLDLLKKGHTEPDKKIGGGIHAFQVRYHPVFKSRCFFVIRDDESVDDFSFRKCVDHIS 60
Query: 174 PLPEDMKVKSDANKAL 189
PLPE+MK KS+ NKAL
Sbjct: 61 PLPENMKAKSEVNKAL 76
>gi|168002202|ref|XP_001753803.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162695210|gb|EDQ81555.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 141
Score = 131 bits (330), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 58/101 (57%), Positives = 79/101 (78%), Gaps = 3/101 (2%)
Query: 79 KLGPKEFGSSIEMFDYFYKFLHFWPPNLNVNKYEHMVLLDLLKKGHPEPDKKIGGGIQAF 138
KLGPK F +++EMF YFY LH W NL+VNKYE+MVL +L+ +G+P+ KIG GI AF
Sbjct: 11 KLGPKVFNTAVEMFIYFYDLLHEWTLNLSVNKYEYMVLSELVAQGNPQ---KIGDGIAAF 67
Query: 139 QVRYHPTYKSRCFFLIREDETADDFSFRKCVDHMLPLPEDM 179
Q+R HP +KSRC++LIR+D + +DFS+RKCVD ++PLP +
Sbjct: 68 QIRNHPQWKSRCYYLIRKDGSEEDFSYRKCVDALMPLPASI 108
>gi|168001805|ref|XP_001753605.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162695484|gb|EDQ81828.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 171
Score = 130 bits (328), Expect = 3e-28, Method: Compositional matrix adjust.
Identities = 55/101 (54%), Positives = 79/101 (78%), Gaps = 3/101 (2%)
Query: 79 KLGPKEFGSSIEMFDYFYKFLHFWPPNLNVNKYEHMVLLDLLKKGHPEPDKKIGGGIQAF 138
KLGPK F + ++MF YFY LH W N+NVNKYE++VL +L+ +G+P+ K+G GI AF
Sbjct: 38 KLGPKVFETPVKMFSYFYNLLHDWQFNVNVNKYEYLVLSELVAQGNPQ---KVGDGIAAF 94
Query: 139 QVRYHPTYKSRCFFLIREDETADDFSFRKCVDHMLPLPEDM 179
Q+R HP +KSRC++LIR+D + +DFS+RKCVD ++PLP ++
Sbjct: 95 QIRNHPEWKSRCYYLIRKDGSEEDFSYRKCVDALMPLPANL 135
>gi|10178075|dbj|BAB11494.1| unnamed protein product [Arabidopsis thaliana]
Length = 100
Score = 123 bits (309), Expect = 5e-26, Method: Compositional matrix adjust.
Identities = 54/68 (79%), Positives = 62/68 (91%)
Query: 114 MVLLDLLKKGHPEPDKKIGGGIQAFQVRYHPTYKSRCFFLIREDETADDFSFRKCVDHML 173
MVLLDL+KKGH EP+KKIGGGI+ FQVR HP +KSRCFFL+RED+TADDFSFRKCVD +L
Sbjct: 1 MVLLDLIKKGHSEPEKKIGGGIKTFQVRTHPMWKSRCFFLVREDDTADDFSFRKCVDQIL 60
Query: 174 PLPEDMKV 181
PLPE+MK
Sbjct: 61 PLPENMKT 68
>gi|255072917|ref|XP_002500133.1| predicted protein [Micromonas sp. RCC299]
gi|226515395|gb|ACO61391.1| predicted protein [Micromonas sp. RCC299]
Length = 218
Score = 110 bits (274), Expect = 5e-22, Method: Compositional matrix adjust.
Identities = 48/97 (49%), Positives = 65/97 (67%)
Query: 78 VKLGPKEFGSSIEMFDYFYKFLHFWPPNLNVNKYEHMVLLDLLKKGHPEPDKKIGGGIQA 137
VKLGPK F S EM YF L+ N ++N YE MV+ L+ HPE +KKIG GI++
Sbjct: 54 VKLGPKTFNSPDEMIKYFSWLLNAMTMNQDMNDYERMVVEACLRDAHPEAEKKIGCGIKS 113
Query: 138 FQVRYHPTYKSRCFFLIREDETADDFSFRKCVDHMLP 174
FQ+R HP + SRC+ ++R D T +DFS+RKCV+ + P
Sbjct: 114 FQIRTHPEHDSRCYMVVRTDGTCEDFSYRKCVEKLFP 150
>gi|384248784|gb|EIE22267.1| hypothetical protein COCSUDRAFT_47805 [Coccomyxa subellipsoidea
C-169]
Length = 350
Score = 96.3 bits (238), Expect = 9e-18, Method: Compositional matrix adjust.
Identities = 70/201 (34%), Positives = 98/201 (48%), Gaps = 33/201 (16%)
Query: 5 AAKELTESNAAAEDMD----------LEGGENGGDANA---KRARDDDDGGEGNGDVSKK 51
A K TE +AA ED D E +GG ++A K+AR ++ G GD +
Sbjct: 32 AKKARTEEDAAGEDQDGAAKKPQRDEKEEQADGGSSDAGPSKKARTENAAGAEVGDAATN 91
Query: 52 Q--KIDEDEKSVEEE-RLEKKEVVNGSGRVKLG----------PKEFGSSI-----EMFD 93
+ I D E E E G+G VK+ PK+ G + E
Sbjct: 92 RGPSIPTDAADATEAGPTEAAE--TGAGDVKVANEEENLSADEPKKIGYKLFKDGKEAAT 149
Query: 94 YFYKFLHFWPPNLNVNKYEHMVLLDLLKKGHPEPDKKIGGGIQAFQVRYHPTYKSRCFFL 153
YF L+ +N+YE ++L+LLK GHPEP+KK+G G++A VR H T S CFFL
Sbjct: 150 YFRTLLNALTQRQPLNEYEFHMVLELLKNGHPEPEKKMGSGVKAIIVRKHQTEDSNCFFL 209
Query: 154 IREDETADDFSFRKCVDHMLP 174
+R D + DDFS KC++ + P
Sbjct: 210 LRTDGSMDDFSVFKCINRLFP 230
>gi|303277021|ref|XP_003057804.1| predicted protein [Micromonas pusilla CCMP1545]
gi|226460461|gb|EEH57755.1| predicted protein [Micromonas pusilla CCMP1545]
Length = 156
Score = 89.0 bits (219), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 39/84 (46%), Positives = 57/84 (67%)
Query: 91 MFDYFYKFLHFWPPNLNVNKYEHMVLLDLLKKGHPEPDKKIGGGIQAFQVRYHPTYKSRC 150
M YF L+ N ++N YE MV+ L+ HP+ +KKIG GI+AFQ+R HP +++RC
Sbjct: 1 MVKYFSWILNNMTINQDMNDYERMVVEPCLRTAHPDAEKKIGSGIKAFQIRTHPEHETRC 60
Query: 151 FFLIREDETADDFSFRKCVDHMLP 174
+ +IR D T +DFS+RKCV+ + P
Sbjct: 61 YTVIRTDGTTEDFSYRKCVEVLFP 84
>gi|357453945|ref|XP_003597253.1| hypothetical protein MTR_2g094530 [Medicago truncatula]
gi|355486301|gb|AES67504.1| hypothetical protein MTR_2g094530 [Medicago truncatula]
Length = 144
Score = 87.4 bits (215), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 54/121 (44%), Positives = 71/121 (58%), Gaps = 10/121 (8%)
Query: 3 EEAAKELTESNAAAEDMDLEGGENGGDANAKRARDDDDGGEGNGDVSKKQKIDEDEKSVE 62
EE A ++ + N E E D +K+A+ DD+ + + +K + DEK
Sbjct: 26 EETAHKIIDPNTTVARFRREEEEPKDDIVSKKAKVDDEKSVEEERLERLEKNEGDEK--- 82
Query: 63 EERLEKKEVVNGSGRVKLGPKEFGSSIEMFDYFYKFLHFWPPNLNVNKYEHMVLLDLLKK 122
E+KE SG V LGPK FGSS++MF YF+KFLH W NLNVNKYEHM+LL+LLK
Sbjct: 83 ----EEKE---ASGGVNLGPKTFGSSLDMFYYFHKFLHAWLQNLNVNKYEHMMLLELLKN 135
Query: 123 G 123
G
Sbjct: 136 G 136
>gi|302851624|ref|XP_002957335.1| tRNA pseudouridine synthase mitochondrial precursor [Volvox carteri
f. nagariensis]
gi|300257294|gb|EFJ41544.1| tRNA pseudouridine synthase mitochondrial precursor [Volvox carteri
f. nagariensis]
Length = 642
Score = 85.5 bits (210), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 43/100 (43%), Positives = 63/100 (63%), Gaps = 1/100 (1%)
Query: 76 GRVKLGPKEFGSSIEMFDYFYKFLHFWPPNLNVNKYEHMVLLDLLKKGHPEPDKKIGGGI 135
G + LG + F + DY L P + ++N+YE+ VLLDL++KGHP KIG G+
Sbjct: 512 GPLTLGYRSFETGKACADYLKALLSTSPLDTDMNEYEYRVLLDLIQKGHPSAASKIGCGL 571
Query: 136 QAFQVR-YHPTYKSRCFFLIREDETADDFSFRKCVDHMLP 174
+AFQVR Y+ ++R FF IR+D T +DFS+ KC+ + P
Sbjct: 572 RAFQVRHYNADGEARAFFAIRKDGTREDFSYVKCLGQLYP 611
>gi|168044545|ref|XP_001774741.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162673896|gb|EDQ60412.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 50
Score = 82.0 bits (201), Expect = 1e-13, Method: Composition-based stats.
Identities = 32/50 (64%), Positives = 43/50 (86%)
Query: 130 KIGGGIQAFQVRYHPTYKSRCFFLIREDETADDFSFRKCVDHMLPLPEDM 179
K+ GGI AFQVR HP ++SRC+FLIR+D + DDFSFRKCV+ ++PLPE++
Sbjct: 1 KVAGGIVAFQVRIHPDWQSRCYFLIRKDGSDDDFSFRKCVNTLMPLPENL 50
>gi|412986367|emb|CCO14793.1| predicted protein [Bathycoccus prasinos]
Length = 240
Score = 79.7 bits (195), Expect = 8e-13, Method: Compositional matrix adjust.
Identities = 37/98 (37%), Positives = 62/98 (63%), Gaps = 1/98 (1%)
Query: 78 VKLGPKEFGSSIEMFDYFYKFLHFWPPNLNVNKYEHMVLLDLLKKGHPEPDKKIG-GGIQ 136
VKLGPK F + + Y L+ + ++N YE +V+ +L++GH + +KKIG GI+
Sbjct: 101 VKLGPKTFDTPEDAIKYISWLLNTVTMHQDLNDYERLVVEGMLRRGHEDAEKKIGESGIK 160
Query: 137 AFQVRYHPTYKSRCFFLIREDETADDFSFRKCVDHMLP 174
+ QV+ H + S+C++++R D + DFS+RKCV+ P
Sbjct: 161 SIQVKVHQEHDSKCYYVVRNDGSRSDFSYRKCVEGCFP 198
>gi|307107981|gb|EFN56222.1| hypothetical protein CHLNCDRAFT_145004 [Chlorella variabilis]
Length = 230
Score = 76.6 bits (187), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 41/107 (38%), Positives = 63/107 (58%), Gaps = 9/107 (8%)
Query: 78 VKLGPKEFGSSIEMFDYFYKFLHFWPPNLNVNKYEHMVLLDLLKKGHPEPDKKIGGGIQA 137
V +G + F + + +DYF+ + N+N YE ++ DL+KKGHPE +K+ GG++A
Sbjct: 79 VTIGYRTFATGKQCYDYFHSLMTKLRKYQNLNDYEFHMVHDLIKKGHPEAARKLEGGVRA 138
Query: 138 FQVRY----HPTYKSRCFFLIREDETADDFSFRKCVDHMLPLPEDMK 180
Q+R H S CFFLI ED + +D S+RKC+ + ED+K
Sbjct: 139 IQLRDVDMGHAV--SSCFFLIHEDGSDEDVSYRKCLAGLF---EDLK 180
>gi|145348551|ref|XP_001418710.1| predicted protein [Ostreococcus lucimarinus CCE9901]
gi|144578940|gb|ABO97003.1| predicted protein [Ostreococcus lucimarinus CCE9901]
Length = 200
Score = 76.6 bits (187), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 32/68 (47%), Positives = 45/68 (66%)
Query: 107 NVNKYEHMVLLDLLKKGHPEPDKKIGGGIQAFQVRYHPTYKSRCFFLIREDETADDFSFR 166
N+N+YE LL+ GH + KK G G++AFQVR HP + +RCF ++R D T +DFS+R
Sbjct: 16 NMNEYEAATTEALLRLGHEDAAKKFGSGLRAFQVRNHPVHNTRCFMIVRTDGTMEDFSYR 75
Query: 167 KCVDHMLP 174
KC + P
Sbjct: 76 KCAARLFP 83
>gi|168005072|ref|XP_001755235.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162693828|gb|EDQ80179.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 527
Score = 75.1 bits (183), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 32/75 (42%), Positives = 49/75 (65%), Gaps = 5/75 (6%)
Query: 102 WPPNLN--VNKYEHMVLLDLLKKGHPEPDKKIGGGIQAFQVRYHPTYKSRCFFLIREDET 159
WP + + + YE+MVL++L+ + K+ GGI AFQV +P +SRCF LIRED +
Sbjct: 400 WPYSFSYVIQNYEYMVLIELIAQSD---SNKVAGGITAFQVHINPNCQSRCFILIREDGS 456
Query: 160 ADDFSFRKCVDHMLP 174
++FSF+K V ++P
Sbjct: 457 KEEFSFKKYVKTLMP 471
>gi|10178076|dbj|BAB11495.1| unnamed protein product [Arabidopsis thaliana]
Length = 135
Score = 72.8 bits (177), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 49/120 (40%), Positives = 67/120 (55%), Gaps = 23/120 (19%)
Query: 1 MAEEAAKELTESNAA------AEDMDLEGGENGGDANAKRARDDDDGGEGNGDVSKKQKI 54
MAEE +E+ +S +A DM++E + ++ ++ E NG SKKQK+
Sbjct: 1 MAEE--QEIVDSLSAEVNPDQKVDMEVETATPKAETGDEKREREETEEEENGGESKKQKV 58
Query: 55 DEDEKSVEEERLEKKEVVNGSGRVKLGPKEFGSSIEMFDYFYKFLHFWPPNLNVNKYEHM 114
E+EKS G VKLGPKEF +S+ MFDYF KFLHFWP +L+VNK H+
Sbjct: 59 GEEEKS---------------GPVKLGPKEFVTSVAMFDYFVKFLHFWPTDLDVNKVIHI 103
>gi|440801022|gb|ELR22047.1| RNA binding motif protein [Acanthamoeba castellanii str. Neff]
Length = 308
Score = 72.0 bits (175), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 31/70 (44%), Positives = 49/70 (70%), Gaps = 1/70 (1%)
Query: 105 NLNVNKYEHMVLLDLLKKGHPEPDKKIGGGIQAFQVRYHPTY-KSRCFFLIREDETADDF 163
N + + E ++LDLL++GH + D+KIG G++ +V HP Y +SRCF ++R D+T DF
Sbjct: 32 NAKLKQEEENLVLDLLRQGHAKADEKIGSGVKHIKVGSHPEYPESRCFHVVRTDDTTADF 91
Query: 164 SFRKCVDHML 173
S+RKCV+ +
Sbjct: 92 SYRKCVETLF 101
>gi|255083296|ref|XP_002504634.1| predicted protein [Micromonas sp. RCC299]
gi|226519902|gb|ACO65892.1| predicted protein [Micromonas sp. RCC299]
Length = 861
Score = 65.9 bits (159), Expect = 1e-08, Method: Composition-based stats.
Identities = 39/95 (41%), Positives = 49/95 (51%), Gaps = 3/95 (3%)
Query: 81 GPKEFGSSIEMFDYFYKFLHFWPPNLN--VNKYEHMVLLDLLKKGHPEPDKKIGGGIQAF 138
G FGS + +F + L P + + V H VLLD L + HP+ K+G G+ F
Sbjct: 81 GAVTFGSPDDAMRFFNRLLETSPVDEDWPVAGETHAVLLDALGR-HPDARDKMGDGVATF 139
Query: 139 QVRYHPTYKSRCFFLIREDETADDFSFRKCVDHML 173
+V HPT R F R D TA DFS RKCVD M
Sbjct: 140 RVSLHPTEGYRSFVATRVDGTAVDFSLRKCVDAMF 174
>gi|414865220|tpg|DAA43777.1| TPA: hypothetical protein ZEAMMB73_746378 [Zea mays]
Length = 169
Score = 64.7 bits (156), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 27/50 (54%), Positives = 33/50 (66%)
Query: 78 VKLGPKEFGSSIEMFDYFYKFLHFWPPNLNVNKYEHMVLLDLLKKGHPEP 127
VKLGPKEF S+I+MF+YFY LH W P L NK V++ + KK P P
Sbjct: 118 VKLGPKEFASAIDMFNYFYALLHSWTPQLEFNKVRVRVVILVAKKIVPLP 167
>gi|357481757|ref|XP_003611164.1| DNA-directed RNA polymerase subunit beta [Medicago truncatula]
gi|355512499|gb|AES94122.1| DNA-directed RNA polymerase subunit beta [Medicago truncatula]
Length = 1687
Score = 64.7 bits (156), Expect = 3e-08, Method: Composition-based stats.
Identities = 32/81 (39%), Positives = 46/81 (56%), Gaps = 1/81 (1%)
Query: 124 HPEPDKKIGGGIQAFQVRYHPTYK-SRCFFLIREDETADDFSFRKCVDHMLPLPEDMKVK 182
HP D+K G G Q +V +HP + SRCFF+IR+D + +DFS+RKC+ L + + K K
Sbjct: 1567 HPRRDEKFGSGPQNIKVGWHPEFTDSRCFFIIRKDGSVEDFSYRKCILGALDIIDPKKSK 1626
Query: 183 SDANKALGGGGGGKGRGGGRG 203
N+ G G + G G
Sbjct: 1627 IQRNRWSGNGDMEAKKWSGNG 1647
>gi|302758090|ref|XP_002962468.1| hypothetical protein SELMODRAFT_404272 [Selaginella moellendorffii]
gi|300169329|gb|EFJ35931.1| hypothetical protein SELMODRAFT_404272 [Selaginella moellendorffii]
Length = 188
Score = 63.5 bits (153), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 34/101 (33%), Positives = 56/101 (55%), Gaps = 6/101 (5%)
Query: 75 SGRVKLGPKEFGSSIEMFDYFYK----FLHF-WPPNLNVNKYEHMVLLDLLKKGHPEPDK 129
SG + G +E+ + F Y LHF + +++Y+ ++ + + + HP +
Sbjct: 55 SGNGEFGEEEYNEDADSFSYLVSTVQCILHFKYRVGHTLDEYDAKLIQEEVLRFHPRAAE 114
Query: 130 KIGGGIQAFQVRYHPTY-KSRCFFLIREDETADDFSFRKCV 169
KIG G+ + V YHP Y +SRCF + R DE+ DFS+RKC+
Sbjct: 115 KIGCGVASIMVNYHPDYNRSRCFMINRLDESVCDFSYRKCM 155
>gi|359474043|ref|XP_002275898.2| PREDICTED: LOW QUALITY PROTEIN: DNA-directed RNA polymerase D subunit
1-like [Vitis vinifera]
Length = 1560
Score = 63.5 bits (153), Expect = 6e-08, Method: Composition-based stats.
Identities = 45/149 (30%), Positives = 71/149 (47%), Gaps = 21/149 (14%)
Query: 44 GNGDVSKK--QKIDEDEKSVEEERLEKKEVVNGSGRVKLGPKEFGSSIEMFDYFYKFLHF 101
NGD + K + +++ KSV L ++ S R+K L
Sbjct: 1356 ANGDSASKGCKSLEKISKSVLRSFLSLNDIQKLSRRLKF-----------------ILQK 1398
Query: 102 WPPNLNVNKYEHMVLLDLLKKGHPEPDKKIGGGIQAFQVRYHPTY-KSRCFFLIREDETA 160
+P N +++ + L+ L HP D+KIG G Q +VRYH Y +RCF L+R D T
Sbjct: 1399 YPINHQLSEIDKTTLMMALYF-HPRRDEKIGPGAQNIKVRYHSKYHNTRCFSLVRTDGTE 1457
Query: 161 DDFSFRKCVDHMLPLPEDMKVKSDANKAL 189
+DFS+ KCV L + + + +S ++ L
Sbjct: 1458 EDFSYHKCVHGALEIIDPRRARSYQSRWL 1486
>gi|297742608|emb|CBI34757.3| unnamed protein product [Vitis vinifera]
Length = 1359
Score = 63.5 bits (153), Expect = 6e-08, Method: Composition-based stats.
Identities = 45/149 (30%), Positives = 71/149 (47%), Gaps = 21/149 (14%)
Query: 44 GNGDVSKK--QKIDEDEKSVEEERLEKKEVVNGSGRVKLGPKEFGSSIEMFDYFYKFLHF 101
NGD + K + +++ KSV L ++ S R+K L
Sbjct: 1214 ANGDSASKGCKSLEKISKSVLRSFLSLNDIQKLSRRLKF-----------------ILQK 1256
Query: 102 WPPNLNVNKYEHMVLLDLLKKGHPEPDKKIGGGIQAFQVRYHPTY-KSRCFFLIREDETA 160
+P N +++ + L+ L HP D+KIG G Q +VRYH Y +RCF L+R D T
Sbjct: 1257 YPINHQLSEIDKTTLMMALYF-HPRRDEKIGPGAQNIKVRYHSKYHNTRCFSLVRTDGTE 1315
Query: 161 DDFSFRKCVDHMLPLPEDMKVKSDANKAL 189
+DFS+ KCV L + + + +S ++ L
Sbjct: 1316 EDFSYHKCVHGALEIIDPRRARSYQSRWL 1344
>gi|302820550|ref|XP_002991942.1| hypothetical protein SELMODRAFT_448611 [Selaginella moellendorffii]
gi|300140328|gb|EFJ07053.1| hypothetical protein SELMODRAFT_448611 [Selaginella moellendorffii]
Length = 312
Score = 62.0 bits (149), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 25/56 (44%), Positives = 39/56 (69%)
Query: 114 MVLLDLLKKGHPEPDKKIGGGIQAFQVRYHPTYKSRCFFLIREDETADDFSFRKCV 169
++LL+ HPE + K+G GI +V HP + SRCFF++R+D++ DFS+RKC+
Sbjct: 178 LILLEEAIPYHPEREIKVGCGISYIKVDVHPEFGSRCFFIVRQDQSEIDFSYRKCM 233
>gi|356495649|ref|XP_003516687.1| PREDICTED: DNA-directed RNA polymerase D subunit 1-like [Glycine max]
Length = 1622
Score = 60.5 bits (145), Expect = 5e-07, Method: Composition-based stats.
Identities = 31/70 (44%), Positives = 40/70 (57%), Gaps = 1/70 (1%)
Query: 124 HPEPDKKIGGGIQAFQVRYHPTYK-SRCFFLIREDETADDFSFRKCVDHMLPLPEDMKVK 182
HP +K G G Q +V +HP YK SRCF +IR D T +DFS+RKC+ L + + K K
Sbjct: 1386 HPHKSEKFGIGPQDIKVGWHPKYKDSRCFHIIRTDGTVEDFSYRKCILGALDIVDPKKSK 1445
Query: 183 SDANKALGGG 192
K G G
Sbjct: 1446 IQEKKWSGHG 1455
>gi|255537259|ref|XP_002509696.1| DNA-directed RNA polymerase, putative [Ricinus communis]
gi|223549595|gb|EEF51083.1| DNA-directed RNA polymerase, putative [Ricinus communis]
Length = 1475
Score = 59.7 bits (143), Expect = 9e-07, Method: Composition-based stats.
Identities = 28/61 (45%), Positives = 38/61 (62%), Gaps = 1/61 (1%)
Query: 124 HPEPDKKIGGGIQAFQVRYHPTYK-SRCFFLIREDETADDFSFRKCVDHMLPLPEDMKVK 182
HP ++KIG G + +V HP Y+ SRCF L+R D T +DFS+RKCV L + K +
Sbjct: 1334 HPRKEEKIGSGFKDIKVVKHPEYQDSRCFSLVRSDGTIEDFSYRKCVYGALEIIAPHKAR 1393
Query: 183 S 183
S
Sbjct: 1394 S 1394
>gi|356540468|ref|XP_003538711.1| PREDICTED: DNA-directed RNA polymerase D subunit 1-like [Glycine max]
Length = 1461
Score = 59.3 bits (142), Expect = 1e-06, Method: Composition-based stats.
Identities = 30/70 (42%), Positives = 40/70 (57%), Gaps = 1/70 (1%)
Query: 124 HPEPDKKIGGGIQAFQVRYHPTYK-SRCFFLIREDETADDFSFRKCVDHMLPLPEDMKVK 182
HP +K G G Q +V +HP YK SRCF ++R D T +DFS+RKC+ L + + K K
Sbjct: 1390 HPRKSEKFGIGPQDIKVGWHPKYKDSRCFHIVRIDGTVEDFSYRKCILGALDIVDPKKSK 1449
Query: 183 SDANKALGGG 192
K G G
Sbjct: 1450 IQEKKWSGHG 1459
>gi|68300844|gb|AAY89360.1| RNA polymerase IV largest subunit [Solanum lycopersicum]
Length = 1138
Score = 58.5 bits (140), Expect = 2e-06, Method: Composition-based stats.
Identities = 26/62 (41%), Positives = 40/62 (64%), Gaps = 2/62 (3%)
Query: 124 HPEPDKKIG-GGIQAFQVRYHPTYK-SRCFFLIREDETADDFSFRKCVDHMLPLPEDMKV 181
HP ++KIG G + ++ YH ++ SRCF ++R D+T +DFS+RKC+ H L L K
Sbjct: 1068 HPRRNEKIGKGAPKEIKIGYHQEFEGSRCFMVVRSDDTVEDFSYRKCMQHALELIAPQKA 1127
Query: 182 KS 183
K+
Sbjct: 1128 KT 1129
>gi|224053985|ref|XP_002298071.1| RNA polymerase IV subunit [Populus trichocarpa]
gi|222845329|gb|EEE82876.1| RNA polymerase IV subunit [Populus trichocarpa]
Length = 1517
Score = 58.5 bits (140), Expect = 2e-06, Method: Composition-based stats.
Identities = 34/94 (36%), Positives = 53/94 (56%), Gaps = 2/94 (2%)
Query: 97 KFLHFWPPNLNVNKYEHMVLLDLLKKGHPEPDKKIGGGIQAFQVRYHPTYK-SRCFFLIR 155
K L+ + + +N+ + VL+ L HP D+KIG G + +V HP Y+ +RCF L+R
Sbjct: 1406 KILNKYSVDQQLNESDKSVLMMTLYF-HPRRDEKIGIGAKDIKVINHPEYQDTRCFSLVR 1464
Query: 156 EDETADDFSFRKCVDHMLPLPEDMKVKSDANKAL 189
D T +DFS+RKC+ + L + + K K L
Sbjct: 1465 TDGTIEDFSYRKCLHNALEIIAPQRAKRYCEKYL 1498
>gi|302815476|ref|XP_002989419.1| hypothetical protein SELMODRAFT_29281 [Selaginella moellendorffii]
gi|300142813|gb|EFJ09510.1| hypothetical protein SELMODRAFT_29281 [Selaginella moellendorffii]
Length = 70
Score = 57.8 bits (138), Expect = 3e-06, Method: Composition-based stats.
Identities = 24/63 (38%), Positives = 42/63 (66%), Gaps = 1/63 (1%)
Query: 108 VNKYEHMVLLDLLKKGHPEPDKKIGGGIQAFQVRYHPTY-KSRCFFLIREDETADDFSFR 166
+++Y+ ++ + + + HP +KIG G+ + + YHP Y +SRCF + R DE+ DFS+R
Sbjct: 8 LDEYDAKLIQEEVLRFHPRAAEKIGCGVASIMINYHPDYNRSRCFMINRLDESVCDFSYR 67
Query: 167 KCV 169
KC+
Sbjct: 68 KCM 70
>gi|449460519|ref|XP_004147993.1| PREDICTED: DNA-directed RNA polymerase D subunit 1-like [Cucumis
sativus]
gi|449494342|ref|XP_004159519.1| PREDICTED: LOW QUALITY PROTEIN: DNA-directed RNA polymerase D subunit
1-like [Cucumis sativus]
Length = 1469
Score = 57.8 bits (138), Expect = 4e-06, Method: Composition-based stats.
Identities = 35/90 (38%), Positives = 49/90 (54%), Gaps = 2/90 (2%)
Query: 99 LHFWPPNLNVNKYEHMVLLDLLKKGHPEPDKKIGGGIQAFQVRYHPTYK-SRCFFLIRED 157
LH + N +N+ + L+ L HP D+KIG G Q +V H Y+ +RCF LIR D
Sbjct: 1374 LHKYSLNERLNEVDKSTLMMALYF-HPHRDEKIGVGAQDIKVGSHSKYQNTRCFVLIRSD 1432
Query: 158 ETADDFSFRKCVDHMLPLPEDMKVKSDANK 187
T +DFS+ KCV L + +VK +K
Sbjct: 1433 GTTEDFSYHKCVLGALEIIAPHRVKGYQSK 1462
>gi|350539299|ref|NP_001233874.1| protein DCL, chloroplastic [Solanum lycopersicum]
gi|6014934|sp|Q42463.1|DCL_SOLLC RecName: Full=Protein DCL, chloroplastic; AltName: Full=Defective
chloroplasts and leaves protein; Flags: Precursor
gi|1305531|gb|AAC49433.1| defective chloroplasts and leaves; required for chloroplast
development and palisade cell differentiation in leaves
[Solanum lycopersicum]
gi|1323698|gb|AAC49434.1| DCL [Solanum lycopersicum]
Length = 224
Score = 56.6 bits (135), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 26/60 (43%), Positives = 37/60 (61%), Gaps = 1/60 (1%)
Query: 115 VLLDLLKKGHPEPDKKIGGGIQAFQVRYHPTYK-SRCFFLIREDETADDFSFRKCVDHML 173
+L L HPE DKKIG G+ V YHP ++ SRC F++R+D DFS+ KC+ ++
Sbjct: 142 TILQRLLPYHPECDKKIGPGVDYITVGYHPDFENSRCLFIVRKDGETVDFSYWKCIKGLI 201
>gi|357465527|ref|XP_003603048.1| Protein DCL [Medicago truncatula]
gi|355492096|gb|AES73299.1| Protein DCL [Medicago truncatula]
Length = 224
Score = 56.2 bits (134), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 25/56 (44%), Positives = 35/56 (62%), Gaps = 1/56 (1%)
Query: 115 VLLDLLKKGHPEPDKKIGGGIQAFQVRYHPTY-KSRCFFLIREDETADDFSFRKCV 169
+++ L HPE KKIG GI V YHP + +SRC F++R+D DFS+ KC+
Sbjct: 142 TIVEKLLPFHPESQKKIGCGIDYITVGYHPNFDRSRCMFIVRQDGELVDFSYWKCI 197
>gi|388522675|gb|AFK49399.1| unknown [Medicago truncatula]
Length = 224
Score = 55.8 bits (133), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 25/56 (44%), Positives = 35/56 (62%), Gaps = 1/56 (1%)
Query: 115 VLLDLLKKGHPEPDKKIGGGIQAFQVRYHPTY-KSRCFFLIREDETADDFSFRKCV 169
+++ L HPE KKIG GI V YHP + +SRC F++R+D DFS+ KC+
Sbjct: 142 TIVEKLLPFHPESQKKIGCGIDYITVGYHPNFDRSRCMFIVRQDGELVDFSYWKCI 197
>gi|388491586|gb|AFK33859.1| unknown [Lotus japonicus]
Length = 224
Score = 55.8 bits (133), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 25/56 (44%), Positives = 36/56 (64%), Gaps = 1/56 (1%)
Query: 115 VLLDLLKKGHPEPDKKIGGGIQAFQVRYHPTY-KSRCFFLIREDETADDFSFRKCV 169
+L+ L HPE +KKIG GI + YHP + +SRC F++R+D DFS+ KC+
Sbjct: 142 TILEKLLPFHPESEKKIGCGIDYITIGYHPQFDRSRCLFIVRKDGELVDFSYWKCI 197
>gi|242066628|ref|XP_002454603.1| hypothetical protein SORBIDRAFT_04g034170 [Sorghum bicolor]
gi|241934434|gb|EES07579.1| hypothetical protein SORBIDRAFT_04g034170 [Sorghum bicolor]
Length = 236
Score = 55.8 bits (133), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 28/59 (47%), Positives = 37/59 (62%), Gaps = 1/59 (1%)
Query: 116 LLDLLKKGHPEPDKKIGGGIQAFQVRYHPTYK-SRCFFLIREDETADDFSFRKCVDHML 173
+L+ L HPE DKKIG GI V HP ++ SRC F++R+D DFSF KCV ++
Sbjct: 156 ILERLLPYHPEYDKKIGCGIDYITVGLHPEFENSRCLFIVRKDGEQVDFSFWKCVKGLI 214
>gi|79319418|ref|NP_001031151.1| uncharacterized protein [Arabidopsis thaliana]
gi|332193993|gb|AEE32114.1| uncharacterized protein [Arabidopsis thaliana]
Length = 219
Score = 55.5 bits (132), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 24/55 (43%), Positives = 37/55 (67%), Gaps = 1/55 (1%)
Query: 116 LLDLLKKGHPEPDKKIGGGIQAFQVRYHPTYK-SRCFFLIREDETADDFSFRKCV 169
++++L HPE +KKIG GI V +HP ++ SRC F++R+D DFS+ KC+
Sbjct: 138 IIEMLLPYHPECEKKIGCGIDYIMVWHHPDFESSRCMFIVRKDGEVVDFSYWKCI 192
>gi|351721112|ref|NP_001235407.1| uncharacterized protein LOC100306718 [Glycine max]
gi|255629361|gb|ACU15025.1| unknown [Glycine max]
Length = 212
Score = 55.5 bits (132), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 24/55 (43%), Positives = 36/55 (65%), Gaps = 1/55 (1%)
Query: 116 LLDLLKKGHPEPDKKIGGGIQAFQVRYHPTY-KSRCFFLIREDETADDFSFRKCV 169
+++ L HPE +KKIG G+ + YHP + +SRC F++RED DFS+ KC+
Sbjct: 131 IIEKLLPFHPEFEKKIGSGVDYITIGYHPDFERSRCLFIVREDGELVDFSYWKCI 185
>gi|398827107|ref|ZP_10585322.1| Protein of unknown function (DUF3223) [Phyllobacterium sp. YR531]
gi|398220347|gb|EJN06800.1| Protein of unknown function (DUF3223) [Phyllobacterium sp. YR531]
Length = 103
Score = 55.1 bits (131), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 30/84 (35%), Positives = 47/84 (55%), Gaps = 2/84 (2%)
Query: 85 FGSSIEMFDYFYKFLHFWPPNLNVNKYEHMVLLDLLKKGHPEPDKKIGGGIQAFQVRYHP 144
F + +E + F L+ + ++ + + L++ HPE KIG GIQ+F+VR
Sbjct: 15 FTTQVEARERFRSILYKYRIGETIDAADSQFMTSALQR-HPEAATKIGFGIQSFEVR-AA 72
Query: 145 TYKSRCFFLIREDETADDFSFRKC 168
Y +RCF++IR D TA+ FSF C
Sbjct: 73 DYGTRCFWVIRVDGTAEKFSFNAC 96
>gi|85683265|gb|ABC47855.1| defective chloroplast and leaves protein [Glycine max]
Length = 204
Score = 55.1 bits (131), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 24/56 (42%), Positives = 36/56 (64%), Gaps = 1/56 (1%)
Query: 115 VLLDLLKKGHPEPDKKIGGGIQAFQVRYHPTY-KSRCFFLIREDETADDFSFRKCV 169
+++ L HPE +KKIG G+ + YHP + +SRC F++RED DFS+ KC+
Sbjct: 122 TIIEKLLPFHPEFEKKIGSGVDYITIGYHPDFERSRCLFIVREDGELVDFSYWKCI 177
>gi|125583799|gb|EAZ24730.1| hypothetical protein OsJ_08502 [Oryza sativa Japonica Group]
Length = 359
Score = 54.7 bits (130), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 25/59 (42%), Positives = 37/59 (62%), Gaps = 1/59 (1%)
Query: 116 LLDLLKKGHPEPDKKIGGGIQAFQVRYHPTYK-SRCFFLIREDETADDFSFRKCVDHML 173
+L+ L HP+ +KKIG GI V HP ++ SRC F++R+D DFSF KC+ ++
Sbjct: 236 ILERLLPYHPQYEKKIGCGIDYLTVGLHPEFENSRCLFIVRKDGEQVDFSFWKCIKGLI 294
>gi|224136772|ref|XP_002326941.1| predicted protein [Populus trichocarpa]
gi|222835256|gb|EEE73691.1| predicted protein [Populus trichocarpa]
Length = 209
Score = 54.7 bits (130), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 25/55 (45%), Positives = 35/55 (63%), Gaps = 1/55 (1%)
Query: 116 LLDLLKKGHPEPDKKIGGGIQAFQVRYHPTY-KSRCFFLIREDETADDFSFRKCV 169
++D L HP+ D KIG GI V YHP + +SRC F++R+D DFS+ KC+
Sbjct: 129 IVDRLLAYHPDCDSKIGCGIDYITVGYHPDFVESRCLFIVRKDGQLVDFSYWKCI 183
>gi|224067262|ref|XP_002302436.1| predicted protein [Populus trichocarpa]
gi|222844162|gb|EEE81709.1| predicted protein [Populus trichocarpa]
Length = 212
Score = 54.7 bits (130), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 26/55 (47%), Positives = 35/55 (63%), Gaps = 1/55 (1%)
Query: 116 LLDLLKKGHPEPDKKIGGGIQAFQVRYHPTYK-SRCFFLIREDETADDFSFRKCV 169
++D L HP+ D KIG GI V YHP + SRC F++R+D A DFS+ KC+
Sbjct: 136 IVDRLLAYHPDFDNKIGCGIDYITVGYHPDFADSRCLFIVRKDGQAVDFSYWKCL 190
>gi|297852278|ref|XP_002894020.1| hypothetical protein ARALYDRAFT_473852 [Arabidopsis lyrata subsp.
lyrata]
gi|297339862|gb|EFH70279.1| hypothetical protein ARALYDRAFT_473852 [Arabidopsis lyrata subsp.
lyrata]
Length = 218
Score = 54.3 bits (129), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 24/55 (43%), Positives = 37/55 (67%), Gaps = 1/55 (1%)
Query: 116 LLDLLKKGHPEPDKKIGGGIQAFQVRYHPTYK-SRCFFLIREDETADDFSFRKCV 169
++++L HPE +KKIG GI V +HP ++ SRC F++R+D DFS+ KC+
Sbjct: 137 IVEMLLPYHPEFEKKIGCGIDYIMVWHHPDFESSRCMFIVRKDGEVVDFSYWKCI 191
>gi|225458623|ref|XP_002284778.1| PREDICTED: protein DCL, chloroplastic-like isoform 1 [Vitis
vinifera]
Length = 215
Score = 54.3 bits (129), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 26/59 (44%), Positives = 37/59 (62%), Gaps = 1/59 (1%)
Query: 116 LLDLLKKGHPEPDKKIGGGIQAFQVRYHPTYK-SRCFFLIREDETADDFSFRKCVDHML 173
+L+ L HPE +KKIG GI V YHP ++ SRC F++R D DFS+ KC+ ++
Sbjct: 136 VLEKLLAYHPECEKKIGCGIDYITVGYHPDFEGSRCLFIVRNDGELVDFSYWKCIKGLI 194
>gi|449447003|ref|XP_004141259.1| PREDICTED: protein DCL, chloroplastic-like [Cucumis sativus]
gi|449519344|ref|XP_004166695.1| PREDICTED: protein DCL, chloroplastic-like [Cucumis sativus]
Length = 225
Score = 54.3 bits (129), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 25/56 (44%), Positives = 36/56 (64%), Gaps = 1/56 (1%)
Query: 115 VLLDLLKKGHPEPDKKIGGGIQAFQVRYHPTYK-SRCFFLIREDETADDFSFRKCV 169
+L+ L HPE +KKIG G+ V YHP ++ SRC F++R+D DFS+ KC+
Sbjct: 141 TILERLLPYHPESEKKIGCGVDYITVGYHPDFESSRCLFIVRKDGEMVDFSYWKCI 196
>gi|18650724|emb|CAD12248.1| DCL protein [Coffea arabica]
Length = 224
Score = 54.3 bits (129), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 22/56 (39%), Positives = 36/56 (64%), Gaps = 1/56 (1%)
Query: 115 VLLDLLKKGHPEPDKKIGGGIQAFQVRYHPTY-KSRCFFLIREDETADDFSFRKCV 169
+L+ + HP+ +KKIG G+ + YHP + +SRC F++R+D DFS+ KC+
Sbjct: 142 TILERVLPYHPQCEKKIGSGVDYITIGYHPDFDRSRCLFIVRKDGELVDFSYWKCI 197
>gi|351721513|ref|NP_001235676.1| uncharacterized protein LOC100527410 [Glycine max]
gi|255632284|gb|ACU16500.1| unknown [Glycine max]
Length = 206
Score = 53.9 bits (128), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 23/56 (41%), Positives = 36/56 (64%), Gaps = 1/56 (1%)
Query: 115 VLLDLLKKGHPEPDKKIGGGIQAFQVRYHPTY-KSRCFFLIREDETADDFSFRKCV 169
+++ L HPE +KKIG G+ + YHP + +SRC F++R+D DFS+ KC+
Sbjct: 124 TIIEKLLPFHPEFEKKIGSGVDYITIGYHPDFERSRCLFIVRQDGELVDFSYWKCI 179
>gi|22330069|ref|NP_683398.1| uncharacterized protein [Arabidopsis thaliana]
gi|12321014|gb|AAG50632.1|AC083835_17 defective chloroplasts and leaves (DCL) protein, putative
[Arabidopsis thaliana]
gi|22135799|gb|AAM91086.1| At1g45261/F2G19.1 [Arabidopsis thaliana]
gi|48310651|gb|AAT41860.1| At1g45261 [Arabidopsis thaliana]
gi|62318604|dbj|BAD95026.1| defective chloroplasts and leaves (DCL) protein [Arabidopsis
thaliana]
gi|332193992|gb|AEE32113.1| uncharacterized protein [Arabidopsis thaliana]
Length = 219
Score = 53.9 bits (128), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 24/55 (43%), Positives = 37/55 (67%), Gaps = 1/55 (1%)
Query: 116 LLDLLKKGHPEPDKKIGGGIQAFQVRYHPTYK-SRCFFLIREDETADDFSFRKCV 169
++++L HPE +KKIG GI V +HP ++ SRC F++R+D DFS+ KC+
Sbjct: 138 IIEMLLPYHPECEKKIGCGIDYIMVGHHPDFESSRCMFIVRKDGEVVDFSYWKCI 192
>gi|303288598|ref|XP_003063587.1| predicted protein [Micromonas pusilla CCMP1545]
gi|226454655|gb|EEH51960.1| predicted protein [Micromonas pusilla CCMP1545]
Length = 628
Score = 53.9 bits (128), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 36/105 (34%), Positives = 53/105 (50%), Gaps = 12/105 (11%)
Query: 78 VKLGPKE----FGSSIEMFDYFYKFLHFWPPNLNVNKY---EHMVLLDLLKKGHPEPDKK 130
V + P++ F + EM YF L + + +Y E + + + HP+ +K
Sbjct: 85 VTIPPRDGGATFATPHEMMGYFSGVLK----DAKLCRYLDGEARDAVASVLRAHPDASRK 140
Query: 131 IG-GGIQAFQVRYHPTYKSRCFFLIREDETADDFSFRKCVDHMLP 174
+G G + FQVR P R F +IRED TA+DFS RK VD + P
Sbjct: 141 MGRGAPRGFQVRQDPEKGYRYFVVIREDGTAEDFSVRKGVDALFP 185
>gi|242044060|ref|XP_002459901.1| hypothetical protein SORBIDRAFT_02g014000 [Sorghum bicolor]
gi|241923278|gb|EER96422.1| hypothetical protein SORBIDRAFT_02g014000 [Sorghum bicolor]
Length = 195
Score = 53.9 bits (128), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 24/59 (40%), Positives = 35/59 (59%)
Query: 115 VLLDLLKKGHPEPDKKIGGGIQAFQVRYHPTYKSRCFFLIREDETADDFSFRKCVDHML 173
V+ + L HP ++KIG G+ V HP +KSRC F +R + +DFS+RKC+ L
Sbjct: 94 VVTEKLLSHHPRAEEKIGCGLDGIMVDRHPEFKSRCLFAVRTNGDLEDFSYRKCLRAYL 152
>gi|242074052|ref|XP_002446962.1| hypothetical protein SORBIDRAFT_06g025933 [Sorghum bicolor]
gi|241938145|gb|EES11290.1| hypothetical protein SORBIDRAFT_06g025933 [Sorghum bicolor]
Length = 1203
Score = 53.5 bits (127), Expect = 6e-05, Method: Composition-based stats.
Identities = 30/82 (36%), Positives = 47/82 (57%), Gaps = 2/82 (2%)
Query: 89 IEMFDYFYKFLHFWPPNLNVNKYEHMVLLDLLKKGHPEPDKKIGGGIQAFQVRYHPTYK- 147
I+M L +P N V + + L++ LK HP +KIG G++ +V +P +
Sbjct: 1101 IDMRASLQNMLREYPLNGYVMEPDKSKLIEALKF-HPRGAEKIGVGVREIKVGLNPNHPG 1159
Query: 148 SRCFFLIREDETADDFSFRKCV 169
+RCF L+R D+T +DFS+ KCV
Sbjct: 1160 TRCFILLRNDDTTEDFSYHKCV 1181
>gi|225438712|ref|XP_002282478.1| PREDICTED: protein DCL, chloroplastic [Vitis vinifera]
gi|147773590|emb|CAN69898.1| hypothetical protein VITISV_032063 [Vitis vinifera]
Length = 205
Score = 53.1 bits (126), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 24/56 (42%), Positives = 36/56 (64%), Gaps = 1/56 (1%)
Query: 115 VLLDLLKKGHPEPDKKIGGGIQAFQVRYHPTYK-SRCFFLIREDETADDFSFRKCV 169
++L+ L HP ++KIG GI V YHP ++ SRC F++R+D DFS+ KC+
Sbjct: 123 IILERLLPYHPGYERKIGSGIDYITVGYHPEFESSRCLFIVRKDGELVDFSYWKCI 178
>gi|302780129|ref|XP_002971839.1| hypothetical protein SELMODRAFT_441655 [Selaginella moellendorffii]
gi|300160138|gb|EFJ26756.1| hypothetical protein SELMODRAFT_441655 [Selaginella moellendorffii]
Length = 1438
Score = 53.1 bits (126), Expect = 8e-05, Method: Composition-based stats.
Identities = 30/89 (33%), Positives = 48/89 (53%), Gaps = 2/89 (2%)
Query: 108 VNKYEHMVLLDLLKKGHPEPDKKIGGGIQAFQVRYHPTYKSRCFFLIREDETADDFSFRK 167
V+ V+LD LK HP D K+G G++ +V H ++ RCF ++R D + +DFS+ K
Sbjct: 1311 VSAANEAVILDTLKY-HPMMDSKVGCGVRHIRVDNHHSFGGRCFHIVRLDGSVEDFSYHK 1369
Query: 168 CVDHMLPLPEDMKVKSDANKALGGGGGGK 196
C+ + + V+ K +GG G K
Sbjct: 1370 CLLERIK-GNTVLVQRYKKKFMGGKNGRK 1397
>gi|222640322|gb|EEE68454.1| hypothetical protein OsJ_26844 [Oryza sativa Japonica Group]
Length = 296
Score = 53.1 bits (126), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 24/56 (42%), Positives = 35/56 (62%), Gaps = 1/56 (1%)
Query: 115 VLLDLLKKGHPEPDKKIGGGIQAFQVRYHPTY-KSRCFFLIREDETADDFSFRKCV 169
++++ L HP D KIG G+ A V HP + KSRC F++R D DFS++KC+
Sbjct: 218 IIVEKLLAYHPRVDDKIGCGLDAIMVDKHPQFRKSRCLFVVRTDGVWIDFSYQKCL 273
>gi|34015211|gb|AAQ56405.1| putative defective chloroplasts and leaves (DCL) protein [Oryza
sativa Japonica Group]
gi|50508259|dbj|BAD32070.1| putative DCL protein precursor [Oryza sativa Japonica Group]
Length = 192
Score = 52.8 bits (125), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 24/56 (42%), Positives = 35/56 (62%), Gaps = 1/56 (1%)
Query: 115 VLLDLLKKGHPEPDKKIGGGIQAFQVRYHPTY-KSRCFFLIREDETADDFSFRKCV 169
++++ L HP D KIG G+ A V HP + KSRC F++R D DFS++KC+
Sbjct: 114 IIVEKLLAYHPRVDDKIGCGLDAIMVDKHPQFRKSRCLFVVRTDGVWIDFSYQKCL 169
>gi|168011278|ref|XP_001758330.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162690365|gb|EDQ76732.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 96
Score = 52.8 bits (125), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 23/51 (45%), Positives = 34/51 (66%), Gaps = 1/51 (1%)
Query: 120 LKKGHPEPDKKIGGGIQAFQVRYHPTY-KSRCFFLIREDETADDFSFRKCV 169
L + HP+ ++KIG GI ++ H T+ K RCF+++R D T DFS+ KCV
Sbjct: 19 LLQHHPKSEEKIGCGIDYIKINRHSTFNKVRCFWIVRTDGTETDFSYHKCV 69
>gi|150396436|ref|YP_001326903.1| hypothetical protein Smed_1218 [Sinorhizobium medicae WSM419]
gi|150027951|gb|ABR60068.1| conserved hypothetical protein [Sinorhizobium medicae WSM419]
Length = 96
Score = 52.8 bits (125), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 29/92 (31%), Positives = 52/92 (56%), Gaps = 2/92 (2%)
Query: 78 VKLGPKEFGSSIEMFDYFYKFLHFWPPNLNVNKYEHMVLLDLLKKGHPEPDKKIGGGIQA 137
V++ +F + + L+ + P V+ + + LLD LK+ HPE KIG G++
Sbjct: 7 VEIAGHQFPRKTDALAFLKVMLNRYRPGDIVHAEDEVFLLDALKR-HPEAAIKIGSGVRG 65
Query: 138 FQVRYHPTYKSRCFFLIREDETADDFSFRKCV 169
F+VR Y ++CF+++R D T + FS++ C+
Sbjct: 66 FEVR-SADYGTQCFWILRVDGTDERFSYKSCI 96
>gi|357129748|ref|XP_003566523.1| PREDICTED: DNA-directed RNA polymerase D subunit 1-like [Brachypodium
distachyon]
Length = 1470
Score = 52.4 bits (124), Expect = 1e-04, Method: Composition-based stats.
Identities = 21/47 (44%), Positives = 33/47 (70%), Gaps = 1/47 (2%)
Query: 124 HPEPDKKIGGGIQAFQVRYHPTYK-SRCFFLIREDETADDFSFRKCV 169
HP +KIG GI+ ++ HP++ +RCF L+R D+T +D S++KCV
Sbjct: 1394 HPRGREKIGVGIRDIKIGQHPSHPGTRCFILVRNDDTTEDVSYKKCV 1440
>gi|296082423|emb|CBI21428.3| unnamed protein product [Vitis vinifera]
Length = 103
Score = 52.4 bits (124), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 24/56 (42%), Positives = 36/56 (64%), Gaps = 1/56 (1%)
Query: 115 VLLDLLKKGHPEPDKKIGGGIQAFQVRYHPTYK-SRCFFLIREDETADDFSFRKCV 169
++L+ L HP ++KIG GI V YHP ++ SRC F++R+D DFS+ KC+
Sbjct: 21 IILERLLPYHPGYERKIGSGIDYITVGYHPEFESSRCLFIVRKDGELVDFSYWKCI 76
>gi|449447037|ref|XP_004141276.1| PREDICTED: protein DCL, chloroplastic-like [Cucumis sativus]
Length = 196
Score = 52.4 bits (124), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 24/56 (42%), Positives = 36/56 (64%), Gaps = 1/56 (1%)
Query: 115 VLLDLLKKGHPEPDKKIGGGIQAFQVRYHPTYK-SRCFFLIREDETADDFSFRKCV 169
++D L HP + KIG G+++ V HP ++ SRCFF+IR D DFS++KC+
Sbjct: 117 TVVDRLLAHHPHAEDKIGCGLESIMVDRHPQFRQSRCFFVIRTDGGWIDFSYQKCL 172
>gi|115448887|ref|NP_001048223.1| Os02g0766000 [Oryza sativa Japonica Group]
gi|113537754|dbj|BAF10137.1| Os02g0766000, partial [Oryza sativa Japonica Group]
Length = 139
Score = 52.0 bits (123), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 25/55 (45%), Positives = 35/55 (63%), Gaps = 1/55 (1%)
Query: 116 LLDLLKKGHPEPDKKIGGGIQAFQVRYHPTYK-SRCFFLIREDETADDFSFRKCV 169
+L+ L HP+ +KKIG GI V HP ++ SRC F++R+D DFSF KC+
Sbjct: 54 ILERLLPYHPQYEKKIGCGIDYLTVGLHPEFENSRCLFIVRKDGEQVDFSFWKCI 108
>gi|302781186|ref|XP_002972367.1| hypothetical protein SELMODRAFT_413061 [Selaginella moellendorffii]
gi|300159834|gb|EFJ26453.1| hypothetical protein SELMODRAFT_413061 [Selaginella moellendorffii]
Length = 1444
Score = 52.0 bits (123), Expect = 2e-04, Method: Composition-based stats.
Identities = 23/62 (37%), Positives = 38/62 (61%), Gaps = 1/62 (1%)
Query: 108 VNKYEHMVLLDLLKKGHPEPDKKIGGGIQAFQVRYHPTYKSRCFFLIREDETADDFSFRK 167
V+ V+LD LK HP D K+G G++ +V H ++ RCF ++R D + +DFS+ +
Sbjct: 1314 VSAANEAVILDTLKY-HPMMDSKVGCGVRHIRVDNHHSFGGRCFHIVRLDGSVEDFSYHR 1372
Query: 168 CV 169
C+
Sbjct: 1373 CL 1374
>gi|413926575|gb|AFW66507.1| putative DNA-directed RNA polymerase family protein [Zea mays]
Length = 660
Score = 51.6 bits (122), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 21/69 (30%), Positives = 40/69 (57%), Gaps = 1/69 (1%)
Query: 106 LNVNKYEHMVLLDLLKKGHPEPDKKIGGGIQAFQVRYHPTYK-SRCFFLIREDETADDFS 164
+ +N + +L+ + + HPE K+ G I V H T++ +RCFF++ D + DFS
Sbjct: 459 VRLNPEDEKFILEKVLEHHPEKQSKVSGEIDYLTVNKHQTFQDTRCFFVVSTDGSQADFS 518
Query: 165 FRKCVDHML 173
+ KC+++ +
Sbjct: 519 YLKCLENFV 527
>gi|46805740|dbj|BAD17127.1| DCL protein-like [Oryza sativa Japonica Group]
gi|46806067|dbj|BAD17315.1| DCL protein-like [Oryza sativa Japonica Group]
Length = 107
Score = 51.6 bits (122), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 25/55 (45%), Positives = 35/55 (63%), Gaps = 1/55 (1%)
Query: 116 LLDLLKKGHPEPDKKIGGGIQAFQVRYHPTYK-SRCFFLIREDETADDFSFRKCV 169
+L+ L HP+ +KKIG GI V HP ++ SRC F++R+D DFSF KC+
Sbjct: 22 ILERLLPYHPQYEKKIGCGIDYLTVGLHPEFENSRCLFIVRKDGEQVDFSFWKCI 76
>gi|226509898|ref|NP_001141526.1| uncharacterized protein LOC100273638 [Zea mays]
gi|194704934|gb|ACF86551.1| unknown [Zea mays]
gi|413924418|gb|AFW64350.1| hypothetical protein ZEAMMB73_449747 [Zea mays]
Length = 235
Score = 51.6 bits (122), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 25/59 (42%), Positives = 37/59 (62%), Gaps = 1/59 (1%)
Query: 116 LLDLLKKGHPEPDKKIGGGIQAFQVRYHPTYK-SRCFFLIREDETADDFSFRKCVDHML 173
+L+ L HP+ ++KIG GI V HP ++ SRC F++R+D DFSF KCV ++
Sbjct: 155 ILERLLPYHPQYNEKIGCGIDYITVGLHPEFENSRCLFIVRKDGEQIDFSFWKCVKGLI 213
>gi|357145566|ref|XP_003573687.1| PREDICTED: DNA-directed RNA polymerase E subunit 1-like
[Brachypodium distachyon]
Length = 185
Score = 51.6 bits (122), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 23/56 (41%), Positives = 35/56 (62%), Gaps = 1/56 (1%)
Query: 115 VLLDLLKKGHPEPDKKIGGGIQAFQVRYHPTY-KSRCFFLIREDETADDFSFRKCV 169
++++ L HP + KIG G+ A V HP + KSRC F++R D DFS++KC+
Sbjct: 107 IIVEKLLTYHPRAEDKIGCGLDAIMVDRHPQFRKSRCLFVVRTDGVWIDFSYQKCL 162
>gi|222055900|ref|YP_002538262.1| hypothetical protein Geob_2812 [Geobacter daltonii FRC-32]
gi|221565189|gb|ACM21161.1| conserved hypothetical protein [Geobacter daltonii FRC-32]
Length = 216
Score = 51.6 bits (122), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 31/102 (30%), Positives = 52/102 (50%), Gaps = 1/102 (0%)
Query: 78 VKLGPKEFGSSIEMFDYFYKFLHFWPPNLNVNKYEHMVLLDLLKKGHPEPDKKIGGGIQA 137
V+L K F + ++F L+ + +N + +L +LL++ HPE + KIG GI+
Sbjct: 5 VELTSKYFRTQKAAMEFFKDMLNTYSDGQVLNSDDTRLLSELLQR-HPEAEYKIGEGIKY 63
Query: 138 FQVRYHPTYKSRCFFLIREDETADDFSFRKCVDHMLPLPEDM 179
F P Y + CFF++R D +FS+ C+ P E +
Sbjct: 64 FYRGTSPEYHTPCFFIMRADNVPTEFSYISCIKANPPTTEQL 105
>gi|449445170|ref|XP_004140346.1| PREDICTED: LOW QUALITY PROTEIN: DNA-directed RNA polymerase E subunit
1-like [Cucumis sativus]
Length = 2019
Score = 51.6 bits (122), Expect = 2e-04, Method: Composition-based stats.
Identities = 21/51 (41%), Positives = 34/51 (66%), Gaps = 1/51 (1%)
Query: 124 HPEPDKKIGGGIQAFQVRYHPTYK-SRCFFLIREDETADDFSFRKCVDHML 173
HP+ K+G GI F V H +++ SRCF+++ D +DFS+RKC+D+ +
Sbjct: 1913 HPDKAAKMGAGIDHFMVSRHSSFQESRCFYVVTTDGHKEDFSYRKCLDNFI 1963
>gi|226503966|ref|NP_001148729.1| LOC100282345 [Zea mays]
gi|195621682|gb|ACG32671.1| DCL protein [Zea mays]
gi|414884598|tpg|DAA60612.1| TPA: DCL protein [Zea mays]
Length = 191
Score = 51.2 bits (121), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 23/59 (38%), Positives = 35/59 (59%)
Query: 115 VLLDLLKKGHPEPDKKIGGGIQAFQVRYHPTYKSRCFFLIREDETADDFSFRKCVDHML 173
V+ + L HP ++KIG G+ V HP +KSRC F++R + +DFS+ KC+ L
Sbjct: 94 VVREKLLSHHPRAEEKIGCGLDGIMVDRHPEFKSRCLFVVRTNGDWEDFSYHKCLRAYL 152
>gi|449479984|ref|XP_004155767.1| PREDICTED: DNA-directed RNA polymerase E subunit 1-like [Cucumis
sativus]
Length = 1959
Score = 51.2 bits (121), Expect = 3e-04, Method: Composition-based stats.
Identities = 21/51 (41%), Positives = 34/51 (66%), Gaps = 1/51 (1%)
Query: 124 HPEPDKKIGGGIQAFQVRYHPTYK-SRCFFLIREDETADDFSFRKCVDHML 173
HP+ K+G GI F V H +++ SRCF+++ D +DFS+RKC+D+ +
Sbjct: 1853 HPDKAAKMGAGIDHFMVSRHSSFQESRCFYVVTTDGHKEDFSYRKCLDNFI 1903
>gi|326533038|dbj|BAJ93491.1| predicted protein [Hordeum vulgare subsp. vulgare]
gi|326533386|dbj|BAJ93665.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 230
Score = 51.2 bits (121), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 24/59 (40%), Positives = 36/59 (61%), Gaps = 1/59 (1%)
Query: 116 LLDLLKKGHPEPDKKIGGGIQAFQVRYHPTYK-SRCFFLIREDETADDFSFRKCVDHML 173
+L+ L HP+ +KKIG GI + HP ++ SRC F++R D DFSF KC+ ++
Sbjct: 150 ILERLLPYHPQYEKKIGCGIDYITLGLHPEFENSRCLFIVRTDGEQVDFSFWKCIKGLI 208
>gi|410865633|ref|YP_006980244.1| hypothetical protein PACID_10650 [Propionibacterium acidipropionici
ATCC 4875]
gi|410822274|gb|AFV88889.1| hypothetical protein PACID_10650 [Propionibacterium acidipropionici
ATCC 4875]
Length = 115
Score = 51.2 bits (121), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 23/57 (40%), Positives = 35/57 (61%), Gaps = 1/57 (1%)
Query: 118 DLLKKGHPEPDKKIGGGIQAFQVRYHPTYKSRCFFLIREDETADDFSFRKCVDHMLP 174
DLL HPE D+K G GI V P + +R F + RED + D++S +KC++++ P
Sbjct: 57 DLLAH-HPEADRKHGAGIFWITVALIPEWGTRNFLVFREDGSIDNWSIKKCINNLRP 112
>gi|219662986|gb|ACL30982.1| mutant DNA dependent RNA polymerase D largest subunit rpd1-8 [Zea
mays]
Length = 1444
Score = 50.8 bits (120), Expect = 3e-04, Method: Composition-based stats.
Identities = 28/82 (34%), Positives = 47/82 (57%), Gaps = 2/82 (2%)
Query: 89 IEMFDYFYKFLHFWPPNLNVNKYEHMVLLDLLKKGHPEPDKKIGGGIQAFQVRYHPTYK- 147
I+M L +P N V + + L++ LK H +KIG G++ ++ +P++
Sbjct: 1342 IDMRTSLQNMLREYPLNGYVAEPDKSQLIEALKF-HSRGAEKIGVGVREIKIGLNPSHPG 1400
Query: 148 SRCFFLIREDETADDFSFRKCV 169
+RCF L+R D+T +DFS+ KCV
Sbjct: 1401 TRCFILLRNDDTTEDFSYHKCV 1422
>gi|308080362|ref|NP_001182824.1| DNA dependent RNA polymerase D largest subunit [Zea mays]
gi|219662980|gb|ACL30979.1| DNA dependent RNA polymerase D largest subunit [Zea mays]
gi|414869425|tpg|DAA47982.1| TPA: putative DNA dependent RNA polymerase D largest subunit family
protein [Zea mays]
gi|414869426|tpg|DAA47983.1| TPA: putative DNA dependent RNA polymerase D largest subunit family
protein [Zea mays]
Length = 1444
Score = 50.8 bits (120), Expect = 3e-04, Method: Composition-based stats.
Identities = 28/82 (34%), Positives = 47/82 (57%), Gaps = 2/82 (2%)
Query: 89 IEMFDYFYKFLHFWPPNLNVNKYEHMVLLDLLKKGHPEPDKKIGGGIQAFQVRYHPTYK- 147
I+M L +P N V + + L++ LK H +KIG G++ ++ +P++
Sbjct: 1342 IDMRTSLQNMLREYPLNGYVAEPDKSQLIEALKF-HSRGAEKIGVGVREIKIGLNPSHPG 1400
Query: 148 SRCFFLIREDETADDFSFRKCV 169
+RCF L+R D+T +DFS+ KCV
Sbjct: 1401 TRCFILLRNDDTTEDFSYHKCV 1422
>gi|115477966|ref|NP_001062578.1| Os09g0112400 [Oryza sativa Japonica Group]
gi|46806377|dbj|BAD17553.1| putative DCL protein [Oryza sativa Japonica Group]
gi|113630811|dbj|BAF24492.1| Os09g0112400 [Oryza sativa Japonica Group]
gi|215766400|dbj|BAG98628.1| unnamed protein product [Oryza sativa Japonica Group]
gi|218201660|gb|EEC84087.1| hypothetical protein OsI_30385 [Oryza sativa Indica Group]
gi|222641062|gb|EEE69194.1| hypothetical protein OsJ_28381 [Oryza sativa Japonica Group]
Length = 159
Score = 50.8 bits (120), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 22/47 (46%), Positives = 31/47 (65%), Gaps = 1/47 (2%)
Query: 124 HPEPDKKIGGGIQAFQVRYHPTY-KSRCFFLIREDETADDFSFRKCV 169
HP + KIG G+ A V HP + KSRC F++R + +DFS+RKC+
Sbjct: 84 HPTSEDKIGCGVDAIMVGKHPDFRKSRCLFIVRTNGETEDFSYRKCI 130
>gi|425733715|ref|ZP_18852035.1| hypothetical protein C272_01210 [Brevibacterium casei S18]
gi|425482155|gb|EKU49312.1| hypothetical protein C272_01210 [Brevibacterium casei S18]
Length = 101
Score = 50.8 bits (120), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 22/57 (38%), Positives = 35/57 (61%), Gaps = 1/57 (1%)
Query: 118 DLLKKGHPEPDKKIGGGIQAFQVRYHPTYKSRCFFLIREDETADDFSFRKCVDHMLP 174
DLL HPE D+K G G+ V P + +R F + RED + D++S +KC++++ P
Sbjct: 43 DLLAH-HPEADRKHGAGVCWITVALIPEWGTRNFLVFREDGSIDNWSIKKCINNLRP 98
>gi|356509751|ref|XP_003523609.1| PREDICTED: protein DCL, chloroplastic-like [Glycine max]
Length = 203
Score = 50.8 bits (120), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 23/63 (36%), Positives = 39/63 (61%), Gaps = 1/63 (1%)
Query: 108 VNKYEHMVLLDLLKKGHPEPDKKIGGGIQAFQVRYHPTYK-SRCFFLIREDETADDFSFR 166
+N+ + +++ L HP + KIG G+++ V HP Y+ SRC F++R D DFS++
Sbjct: 116 LNEEDEKAIVEKLLAYHPHSEDKIGCGLESIMVDRHPQYRQSRCLFVVRTDGGWIDFSYQ 175
Query: 167 KCV 169
KC+
Sbjct: 176 KCL 178
>gi|121594768|ref|YP_986664.1| hypothetical protein Ajs_2427 [Acidovorax sp. JS42]
gi|120606848|gb|ABM42588.1| conserved hypothetical protein [Acidovorax sp. JS42]
Length = 99
Score = 50.4 bits (119), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 35/92 (38%), Positives = 47/92 (51%), Gaps = 2/92 (2%)
Query: 78 VKLGPKEFGSSIEMFDYFYKFLHFWPPNLNVNKYEHMVLLDLLKKGHPEPDKKIGGGIQA 137
V LG F S +F L + P V+ E VLL+ L HPE KIG GI
Sbjct: 7 VVLGDVTFKSESAARTFFKAMLRKYAPGDRVSD-EDAVLLERLLGRHPEVHGKIGEGIDH 65
Query: 138 FQVRYHPTYKSRCFFLIREDETADDFSFRKCV 169
F+V H T+ S+CF + R D + +DFS+ C+
Sbjct: 66 FEVMSH-TFNSQCFAVHRTDGSFEDFSYTWCI 96
>gi|83592149|ref|YP_425901.1| hypothetical protein Rru_A0810 [Rhodospirillum rubrum ATCC 11170]
gi|386348854|ref|YP_006047102.1| hypothetical protein F11_04175 [Rhodospirillum rubrum F11]
gi|83575063|gb|ABC21614.1| conserved hypothetical protein [Rhodospirillum rubrum ATCC 11170]
gi|346717290|gb|AEO47305.1| hypothetical protein F11_04175 [Rhodospirillum rubrum F11]
Length = 96
Score = 50.4 bits (119), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 27/92 (29%), Positives = 52/92 (56%), Gaps = 2/92 (2%)
Query: 78 VKLGPKEFGSSIEMFDYFYKFLHFWPPNLNVNKYEHMVLLDLLKKGHPEPDKKIGGGIQA 137
+++ EF + + L+ + P V+ + L++ LK+ HP+ KIG G++
Sbjct: 7 IEIAGHEFARKADALAFMKVMLNRYRPGDIVSTVDGAFLVEALKR-HPDATSKIGPGVRN 65
Query: 138 FQVRYHPTYKSRCFFLIREDETADDFSFRKCV 169
F+VR Y ++CF+++R D + + FS++KCV
Sbjct: 66 FEVR-SADYGTQCFWILRTDGSEERFSYKKCV 96
>gi|168177047|pdb|2K0M|A Chain A, Solution Nmr Structure Of The Uncharacterized Protein From
Rhodospirillum Rubrum Gene Locus Rru_a0810. Northeast
Structural Genomics Target Rrr43
Length = 104
Score = 50.4 bits (119), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 27/92 (29%), Positives = 52/92 (56%), Gaps = 2/92 (2%)
Query: 78 VKLGPKEFGSSIEMFDYFYKFLHFWPPNLNVNKYEHMVLLDLLKKGHPEPDKKIGGGIQA 137
+++ EF + + L+ + P V+ + L++ LK+ HP+ KIG G++
Sbjct: 7 IEIAGHEFARKADALAFMKVMLNRYRPGDIVSTVDGAFLVEALKR-HPDATSKIGPGVRN 65
Query: 138 FQVRYHPTYKSRCFFLIREDETADDFSFRKCV 169
F+VR Y ++CF+++R D + + FS++KCV
Sbjct: 66 FEVR-SADYGTQCFWILRTDGSEERFSYKKCV 96
>gi|116793751|gb|ABK26866.1| unknown [Picea sitchensis]
Length = 255
Score = 50.4 bits (119), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 26/60 (43%), Positives = 37/60 (61%), Gaps = 2/60 (3%)
Query: 112 EH-MVLLDLLKKGHPEPDKKIGGGIQAFQVRYHPTY-KSRCFFLIREDETADDFSFRKCV 169
EH +L+ L HPE ++KIG G+ V HP + SRC F+IR+D + DFS+ KC+
Sbjct: 171 EHETTILEKLLPYHPELEEKIGCGVDFITVDNHPDFGDSRCLFIIRKDGESIDFSYWKCL 230
>gi|326494338|dbj|BAJ90438.1| predicted protein [Hordeum vulgare subsp. vulgare]
gi|326533252|dbj|BAJ93598.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 183
Score = 50.4 bits (119), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 22/56 (39%), Positives = 35/56 (62%), Gaps = 1/56 (1%)
Query: 115 VLLDLLKKGHPEPDKKIGGGIQAFQVRYHPTYK-SRCFFLIREDETADDFSFRKCV 169
V+++ + HP + KIG G+ A V HP +K SRC +++R + DFS+RKC+
Sbjct: 94 VVVEKVLAHHPRSEDKIGCGLHAIMVNKHPDFKMSRCLYVVRTNGAWADFSYRKCL 149
>gi|224136816|ref|XP_002326952.1| predicted protein [Populus trichocarpa]
gi|222835267|gb|EEE73702.1| predicted protein [Populus trichocarpa]
Length = 195
Score = 50.4 bits (119), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 24/56 (42%), Positives = 34/56 (60%), Gaps = 1/56 (1%)
Query: 115 VLLDLLKKGHPEPDKKIGGGIQAFQVRYHPTYK-SRCFFLIREDETADDFSFRKCV 169
V+ + L HP D KIG G+ + V HP +K SRC F++R D DFS++KC+
Sbjct: 116 VVAERLLAYHPNSDDKIGCGLDSIMVDRHPQFKNSRCLFVVRTDGGWIDFSYQKCL 171
>gi|163747336|ref|ZP_02154690.1| hypothetical protein OIHEL45_17746 [Oceanibulbus indolifex HEL-45]
gi|161379446|gb|EDQ03861.1| hypothetical protein OIHEL45_17746 [Oceanibulbus indolifex HEL-45]
Length = 95
Score = 50.1 bits (118), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 25/53 (47%), Positives = 33/53 (62%), Gaps = 1/53 (1%)
Query: 116 LLDLLKKGHPEPDKKIGGGIQAFQVRYHPTYKSRCFFLIREDETADDFSFRKC 168
+L L HPE +KIG GI++F VR Y +RCF++ R D T + FSFR C
Sbjct: 43 ILTHLMHMHPEAAEKIGPGIESFSVR-TADYGTRCFWVNRVDGTTEKFSFRAC 94
>gi|226528437|ref|NP_001148429.1| DCL protein [Zea mays]
gi|195619226|gb|ACG31443.1| DCL protein [Zea mays]
gi|414872815|tpg|DAA51372.1| TPA: DCL protein [Zea mays]
Length = 188
Score = 49.7 bits (117), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 24/56 (42%), Positives = 34/56 (60%), Gaps = 1/56 (1%)
Query: 115 VLLDLLKKGHPEPDKKIGGGIQAFQVRYHPTY-KSRCFFLIREDETADDFSFRKCV 169
V+++ L HP KIG G+ A V HP + KSRC F++R D DFS++KC+
Sbjct: 110 VVVEKLLSYHPRAQDKIGCGLDAIMVDRHPEFRKSRCLFVVRTDGVWIDFSYQKCL 165
>gi|116309922|emb|CAH66955.1| OSIGBa0147H17.3 [Oryza sativa Indica Group]
Length = 1407
Score = 49.7 bits (117), Expect = 0.001, Method: Composition-based stats.
Identities = 29/82 (35%), Positives = 44/82 (53%), Gaps = 2/82 (2%)
Query: 89 IEMFDYFYKFLHFWPPNLNVNKYEHMVLLDLLKKGHPEPDKKIGGGIQAFQVRYHPTY-K 147
I+M L + N V + + L++ LK HP KIG GI+ ++ +P +
Sbjct: 1298 IDMRTSLQNMLREYTLNEVVTEQDKSCLIEALKF-HPRGYDKIGVGIREIKIGVNPGHPS 1356
Query: 148 SRCFFLIREDETADDFSFRKCV 169
SRCF ++R D+T DFS+ KCV
Sbjct: 1357 SRCFIVLRNDDTTADFSYNKCV 1378
>gi|242038119|ref|XP_002466454.1| hypothetical protein SORBIDRAFT_01g008000 [Sorghum bicolor]
gi|241920308|gb|EER93452.1| hypothetical protein SORBIDRAFT_01g008000 [Sorghum bicolor]
Length = 188
Score = 49.3 bits (116), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 24/56 (42%), Positives = 34/56 (60%), Gaps = 1/56 (1%)
Query: 115 VLLDLLKKGHPEPDKKIGGGIQAFQVRYHPTY-KSRCFFLIREDETADDFSFRKCV 169
V+++ L HP KIG G+ A V HP + KSRC F++R D DFS++KC+
Sbjct: 110 VVVEKLLSYHPRAHDKIGCGLDAIMVDRHPEFRKSRCLFVVRTDGVWIDFSYQKCL 165
>gi|296090333|emb|CBI40152.3| unnamed protein product [Vitis vinifera]
Length = 1890
Score = 48.5 bits (114), Expect = 0.002, Method: Composition-based stats.
Identities = 21/59 (35%), Positives = 37/59 (62%), Gaps = 1/59 (1%)
Query: 116 LLDLLKKGHPEPDKKIGGGIQAFQVRYHPTY-KSRCFFLIREDETADDFSFRKCVDHML 173
+LD + HP+ K+G GI V H ++ +SRCF+++ D +DFS+RKC+++ +
Sbjct: 1780 ILDKVFNNHPDKAVKMGTGIDYVMVSRHSSFLESRCFYVVSTDGHKEDFSYRKCLENFI 1838
>gi|356564152|ref|XP_003550320.1| PREDICTED: DNA-directed RNA polymerase E subunit 1-like [Glycine
max]
Length = 176
Score = 48.5 bits (114), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 20/51 (39%), Positives = 31/51 (60%), Gaps = 1/51 (1%)
Query: 124 HPEPDKKIGGGIQAFQVRYHPTYK-SRCFFLIREDETADDFSFRKCVDHML 173
HP+ + KIG G+ + V HP Y RC F++R D + DFS+R C++ +
Sbjct: 100 HPDYEDKIGSGLNSIMVDQHPLYLFPRCLFVVRTDGSWIDFSYRVCIEEYI 150
>gi|429215257|ref|ZP_19206419.1| hypothetical protein PM1_05217 [Pseudomonas sp. M1]
gi|428154484|gb|EKX01035.1| hypothetical protein PM1_05217 [Pseudomonas sp. M1]
Length = 212
Score = 48.5 bits (114), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 29/96 (30%), Positives = 48/96 (50%), Gaps = 11/96 (11%)
Query: 80 LGPKEFGSSIEMFDYFYKFLHFWPP-----NLNVNKYEHMVLLDLLKKGHPEPDKKIGGG 134
LGP ++ S E+ D F+ P N+ + K L LL HP+ ++KIG G
Sbjct: 4 LGPFQYSSKQELLDRLKVFVATAPVGRVSHNIAIQK------LHLLIALHPDAERKIGSG 57
Query: 135 IQAFQVRYHPTYKSRCFFLIREDETADDFSFRKCVD 170
I F+V+ + + +L+R D T + FS++ C+
Sbjct: 58 IDHFKVKRNVLGAGQGLWLVRSDGTEESFSYKLCIS 93
>gi|2088657|gb|AAB95289.1| unknown protein [Arabidopsis thaliana]
Length = 839
Score = 48.1 bits (113), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 20/63 (31%), Positives = 35/63 (55%), Gaps = 1/63 (1%)
Query: 112 EHMVLLDLLKKGHPEPDKKIGGGIQAFQVRYHPTYK-SRCFFLIREDETADDFSFRKCVD 170
+ +L+ + HP+ + K+G G+ V H + SRCFF++ D DFS+RK ++
Sbjct: 632 DKTFVLEKILNFHPQKETKLGSGVDFITVDKHTIFSDSRCFFVVSTDGAKQDFSYRKSLN 691
Query: 171 HML 173
+ L
Sbjct: 692 NYL 694
>gi|222642066|gb|EEE70198.1| hypothetical protein OsJ_30285 [Oryza sativa Japonica Group]
Length = 1384
Score = 48.1 bits (113), Expect = 0.002, Method: Composition-based stats.
Identities = 37/127 (29%), Positives = 59/127 (46%), Gaps = 10/127 (7%)
Query: 51 KQKIDEDEKSVEEERLEKKEVVNGSGRVKLGPKEFGSS-------IEMFDYFYKFLHFWP 103
KQ+ ++ K + +NG G + + K S I+M L +
Sbjct: 1231 KQRTEKPSKQRSAFSSKGNATING-GTISVNQKFLDSKVGIWENIIDMRTCLQNMLREYT 1289
Query: 104 PNLNVNKYEHMVLLDLLKKGHPEPDKKIGGGIQAFQVRYHPTY-KSRCFFLIREDETADD 162
N V + + L++ LK HP KIG GI+ ++ +P + SRCF + R D+T+ D
Sbjct: 1290 LNEVVTEQDKSCLIEALKF-HPRGYDKIGVGIREIKIGVNPGHPNSRCFIVQRSDDTSAD 1348
Query: 163 FSFRKCV 169
FS+ KCV
Sbjct: 1349 FSYNKCV 1355
>gi|218202606|gb|EEC85033.1| hypothetical protein OsI_32338 [Oryza sativa Indica Group]
Length = 1384
Score = 48.1 bits (113), Expect = 0.002, Method: Composition-based stats.
Identities = 37/127 (29%), Positives = 59/127 (46%), Gaps = 10/127 (7%)
Query: 51 KQKIDEDEKSVEEERLEKKEVVNGSGRVKLGPKEFGSS-------IEMFDYFYKFLHFWP 103
KQ+ ++ K + +NG G + + K S I+M L +
Sbjct: 1231 KQRTEKPSKQRSAFSSKGNATING-GTISVNQKFLDSKVGIWENIIDMRTCLQNMLREYT 1289
Query: 104 PNLNVNKYEHMVLLDLLKKGHPEPDKKIGGGIQAFQVRYHPTY-KSRCFFLIREDETADD 162
N V + + L++ LK HP KIG GI+ ++ +P + SRCF + R D+T+ D
Sbjct: 1290 LNEVVTEQDKSCLIEALKF-HPRGYDKIGVGIREIKIGVNPGHPNSRCFIVQRSDDTSAD 1348
Query: 163 FSFRKCV 169
FS+ KCV
Sbjct: 1349 FSYNKCV 1355
>gi|225465870|ref|XP_002265533.1| PREDICTED: DNA-directed RNA polymerase E subunit 1 [Vitis vinifera]
Length = 1830
Score = 48.1 bits (113), Expect = 0.002, Method: Composition-based stats.
Identities = 21/59 (35%), Positives = 37/59 (62%), Gaps = 1/59 (1%)
Query: 116 LLDLLKKGHPEPDKKIGGGIQAFQVRYHPTY-KSRCFFLIREDETADDFSFRKCVDHML 173
+LD + HP+ K+G GI V H ++ +SRCF+++ D +DFS+RKC+++ +
Sbjct: 1720 ILDKVFNNHPDKAVKMGTGIDYVMVSRHSSFLESRCFYVVSTDGHKEDFSYRKCLENFI 1778
>gi|255538290|ref|XP_002510210.1| DCL protein, chloroplast precursor, putative [Ricinus communis]
gi|223550911|gb|EEF52397.1| DCL protein, chloroplast precursor, putative [Ricinus communis]
Length = 214
Score = 48.1 bits (113), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 23/56 (41%), Positives = 35/56 (62%), Gaps = 1/56 (1%)
Query: 115 VLLDLLKKGHPEPDKKIGGGIQAFQVRYHPTYK-SRCFFLIREDETADDFSFRKCV 169
+++ L HPE +KKIG GI V +H ++ SRC F++R+D DFS+ KC+
Sbjct: 133 TIVERLLPFHPECEKKIGPGIDYITVGHHTEFENSRCLFIVRKDGKLVDFSYWKCI 188
>gi|407775867|ref|ZP_11123159.1| hypothetical protein TH2_18219 [Thalassospira profundimaris WP0211]
gi|407281228|gb|EKF06792.1| hypothetical protein TH2_18219 [Thalassospira profundimaris WP0211]
Length = 96
Score = 47.8 bits (112), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 30/92 (32%), Positives = 48/92 (52%), Gaps = 2/92 (2%)
Query: 78 VKLGPKEFGSSIEMFDYFYKFLHFWPPNLNVNKYEHMVLLDLLKKGHPEPDKKIGGGIQA 137
VK+G +F + +Y L+ + V++ + L D LK HP+ + K G G+
Sbjct: 7 VKIGEVDFAKKGDALEYLRVMLNSYALEERVSRDDENFLRDALK-NHPDANDKFGDGVDH 65
Query: 138 FQVRYHPTYKSRCFFLIREDETADDFSFRKCV 169
F VR Y +RCF++ R D T + FS++ CV
Sbjct: 66 FFVR-RADYGTRCFWVRRLDGTEERFSYKSCV 96
>gi|115460018|ref|NP_001053609.1| Os04g0572600 [Oryza sativa Japonica Group]
gi|113565180|dbj|BAF15523.1| Os04g0572600 [Oryza sativa Japonica Group]
Length = 449
Score = 47.8 bits (112), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 29/82 (35%), Positives = 44/82 (53%), Gaps = 2/82 (2%)
Query: 89 IEMFDYFYKFLHFWPPNLNVNKYEHMVLLDLLKKGHPEPDKKIGGGIQAFQVRYHPTY-K 147
I+M L + N V + + L++ LK HP KIG GI+ ++ +P +
Sbjct: 340 IDMRTSLQNMLREYTLNEVVTEQDKSCLMEALK-FHPRGYDKIGVGIREIKIGVNPGHPS 398
Query: 148 SRCFFLIREDETADDFSFRKCV 169
SRCF ++R D+T DFS+ KCV
Sbjct: 399 SRCFIVLRNDDTTADFSYNKCV 420
>gi|356546354|ref|XP_003541591.1| PREDICTED: DNA-directed RNA polymerase E subunit 1-like [Glycine max]
Length = 2020
Score = 47.4 bits (111), Expect = 0.004, Method: Composition-based stats.
Identities = 20/59 (33%), Positives = 39/59 (66%), Gaps = 1/59 (1%)
Query: 112 EHMVLLDLLKKGHPEPDKKIGGGIQAFQVRYHPTYK-SRCFFLIREDETADDFSFRKCV 169
+ + +L+ + + HP+ + K+G GI V H +++ SRCF+++ +D + DFS+RKC+
Sbjct: 1911 DQLFVLENVFEHHPDKETKMGAGIDYVMVNKHSSFQESRCFYVVCKDGQSKDFSYRKCL 1969
>gi|215736910|dbj|BAG95839.1| unnamed protein product [Oryza sativa Japonica Group]
Length = 158
Score = 47.4 bits (111), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 29/82 (35%), Positives = 44/82 (53%), Gaps = 2/82 (2%)
Query: 89 IEMFDYFYKFLHFWPPNLNVNKYEHMVLLDLLKKGHPEPDKKIGGGIQAFQVRYHPTY-K 147
I+M L + N V + + L++ LK HP KIG GI+ ++ +P +
Sbjct: 49 IDMRTCLQNMLREYTLNEVVTEQDKSCLIEALK-FHPRGYDKIGVGIREIKIGVNPGHPN 107
Query: 148 SRCFFLIREDETADDFSFRKCV 169
SRCF + R D+T+ DFS+ KCV
Sbjct: 108 SRCFIVQRSDDTSADFSYNKCV 129
>gi|68300847|gb|AAY89361.1| RNA polymerase IV largest subunit [Antirrhinum majus]
Length = 1112
Score = 47.4 bits (111), Expect = 0.004, Method: Composition-based stats.
Identities = 24/74 (32%), Positives = 41/74 (55%), Gaps = 2/74 (2%)
Query: 97 KFLHFWPPNLNVNKYEHMVLLDLLKKGHPEPDKKIGGGIQAFQVRYHPTYK-SRCFFLIR 155
+ LH + + + + + L L+ HP ++K G G +V HP +K SRCFF+++
Sbjct: 1030 RMLHEYASDCQLRGEDKTLALRALQY-HPRWEEKTGAGTVEIKVGRHPDHKESRCFFVVK 1088
Query: 156 EDETADDFSFRKCV 169
D T +D S+RK +
Sbjct: 1089 TDGTEEDISYRKSI 1102
>gi|357515123|ref|XP_003627850.1| Protein DCL [Medicago truncatula]
gi|355521872|gb|AET02326.1| Protein DCL [Medicago truncatula]
Length = 481
Score = 47.0 bits (110), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 20/67 (29%), Positives = 42/67 (62%), Gaps = 2/67 (2%)
Query: 108 VNKYEHMVLLDLLKKGHPEPDKKIGGGIQAFQVRYHPTYK-SRCFFLIREDETADDFSFR 166
N+ + VL ++ + HP+ + K+G G+ V H ++ SRC +++ +D +DFS+R
Sbjct: 323 ANEDQKYVLENVFEH-HPDKETKMGVGVDHVMVSKHSNFQDSRCLYVVLKDGKKEDFSYR 381
Query: 167 KCVDHML 173
KC+++++
Sbjct: 382 KCLENLV 388
>gi|147801680|emb|CAN63470.1| hypothetical protein VITISV_024603 [Vitis vinifera]
Length = 1081
Score = 46.6 bits (109), Expect = 0.007, Method: Composition-based stats.
Identities = 21/59 (35%), Positives = 37/59 (62%), Gaps = 1/59 (1%)
Query: 116 LLDLLKKGHPEPDKKIGGGIQAFQVRYHPTY-KSRCFFLIREDETADDFSFRKCVDHML 173
+LD + HP+ K+G GI V H ++ +SRCF+++ D +DFS+RKC+++ +
Sbjct: 971 ILDKVFNNHPDKAVKMGTGIDYVMVSRHSSFLESRCFYVVSTDGHKEDFSYRKCLENFI 1029
>gi|392984303|ref|YP_006482890.1| hypothetical protein PADK2_14545 [Pseudomonas aeruginosa DK2]
gi|419753621|ref|ZP_14280023.1| hypothetical protein CF510_11620 [Pseudomonas aeruginosa
PADK2_CF510]
gi|384399977|gb|EIE46338.1| hypothetical protein CF510_11620 [Pseudomonas aeruginosa
PADK2_CF510]
gi|392319808|gb|AFM65188.1| hypothetical protein PADK2_14545 [Pseudomonas aeruginosa DK2]
Length = 215
Score = 46.6 bits (109), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 29/94 (30%), Positives = 48/94 (51%), Gaps = 7/94 (7%)
Query: 80 LGPKEFGSSIEMFDYFYKFLHFWPPNLNVNKYEHMVL---LDLLKKGHPEPDKKIGGGIQ 136
LGP ++ S E+ D F+ P V K H + L LL HP+ ++KIG GI
Sbjct: 4 LGPFQYSSKQELLDRLKVFVGTAP----VGKISHKIAIQKLHLLIALHPDAERKIGSGID 59
Query: 137 AFQVRYHPTYKSRCFFLIREDETADDFSFRKCVD 170
F+V+ + + +++R D T + FS++ C+
Sbjct: 60 HFKVQRNVLGAGQGLWIVRSDGTEESFSYKLCIT 93
>gi|297819228|ref|XP_002877497.1| hypothetical protein ARALYDRAFT_905861 [Arabidopsis lyrata subsp.
lyrata]
gi|297323335|gb|EFH53756.1| hypothetical protein ARALYDRAFT_905861 [Arabidopsis lyrata subsp.
lyrata]
Length = 203
Score = 46.6 bits (109), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 21/56 (37%), Positives = 33/56 (58%), Gaps = 1/56 (1%)
Query: 115 VLLDLLKKGHPEPDKKIGGGIQAFQVRYHPTYK-SRCFFLIREDETADDFSFRKCV 169
++++ L HP KIG G+ V HP ++ SRC F++R D DFS++KC+
Sbjct: 123 IVMEKLLAYHPYSKDKIGCGLDFIMVDRHPQFRHSRCLFVVRTDGGWIDFSYQKCL 178
>gi|356555019|ref|XP_003545837.1| PREDICTED: DNA-directed RNA polymerase E subunit 1-like [Glycine max]
Length = 2098
Score = 46.2 bits (108), Expect = 0.009, Method: Composition-based stats.
Identities = 20/59 (33%), Positives = 39/59 (66%), Gaps = 1/59 (1%)
Query: 112 EHMVLLDLLKKGHPEPDKKIGGGIQAFQVRYHPTYK-SRCFFLIREDETADDFSFRKCV 169
+ + +L+ + + HP+ + K+G GI V H +++ SRCF+++ +D + DFS+RKC+
Sbjct: 1970 DQLFVLENVFEHHPDKETKMGTGIDYVMVNKHSSFQESRCFYVVCKDGESKDFSYRKCL 2028
>gi|357155574|ref|XP_003577164.1| PREDICTED: DNA-directed RNA polymerase E subunit 1-like [Brachypodium
distachyon]
Length = 1935
Score = 46.2 bits (108), Expect = 0.010, Method: Composition-based stats.
Identities = 20/49 (40%), Positives = 31/49 (63%), Gaps = 1/49 (2%)
Query: 124 HPEPDKKIGGGIQAFQVRYHPTYK-SRCFFLIREDETADDFSFRKCVDH 171
HPE ++K+ G I V H ++ SRCF+++ D T DFS+ KC+D+
Sbjct: 1775 HPEKERKVPGEIDHIMVNKHHIFQESRCFYVVLADGTHTDFSYNKCMDN 1823
>gi|238013416|gb|ACR37743.1| unknown [Zea mays]
Length = 101
Score = 46.2 bits (108), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 25/70 (35%), Positives = 43/70 (61%), Gaps = 2/70 (2%)
Query: 102 WPPNLNVNKYEHMVLLDLLKKGHPEPDKKIGGGIQAFQVRYHPTYK-SRCFFLIREDETA 160
+P N V + + L++ LK H +KIG G++ ++ +P++ +RCF L+R D+T
Sbjct: 12 YPLNGYVAEPDKSQLIEALK-FHSRGAEKIGVGVREIKIGLNPSHPGTRCFILLRNDDTT 70
Query: 161 DDFSFRKCVD 170
+DFS+ KCV
Sbjct: 71 EDFSYHKCVQ 80
>gi|15232596|ref|NP_190247.1| uncharacterized protein [Arabidopsis thaliana]
gi|6523066|emb|CAB62333.1| putative protein [Arabidopsis thaliana]
gi|21554240|gb|AAM63315.1| unknown [Arabidopsis thaliana]
gi|26452933|dbj|BAC43543.1| unknown protein [Arabidopsis thaliana]
gi|28973177|gb|AAO63913.1| unknown protein [Arabidopsis thaliana]
gi|332644664|gb|AEE78185.1| uncharacterized protein [Arabidopsis thaliana]
Length = 207
Score = 46.2 bits (108), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 21/56 (37%), Positives = 33/56 (58%), Gaps = 1/56 (1%)
Query: 115 VLLDLLKKGHPEPDKKIGGGIQAFQVRYHPTYK-SRCFFLIREDETADDFSFRKCV 169
++++ L HP KIG G+ V HP ++ SRC F++R D DFS++KC+
Sbjct: 127 IVMEKLLPYHPYSKDKIGCGLDFIMVDRHPQFRHSRCLFVVRTDGGWIDFSYQKCL 182
>gi|255538194|ref|XP_002510162.1| conserved hypothetical protein [Ricinus communis]
gi|223550863|gb|EEF52349.1| conserved hypothetical protein [Ricinus communis]
Length = 234
Score = 45.8 bits (107), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 21/55 (38%), Positives = 34/55 (61%), Gaps = 1/55 (1%)
Query: 116 LLDLLKKGHPEPDKKIGGGIQAFQVRYHPTYK-SRCFFLIREDETADDFSFRKCV 169
+++ L HP + KIG G+ + V HP ++ SRC F++R D DFS++KC+
Sbjct: 156 IVEKLLAHHPNSEDKIGCGLDSIMVDRHPQFRHSRCLFVVRIDGGWIDFSYQKCL 210
>gi|115480591|ref|NP_001063889.1| Os09g0555200 [Oryza sativa Japonica Group]
gi|113632122|dbj|BAF25803.1| Os09g0555200, partial [Oryza sativa Japonica Group]
Length = 318
Score = 45.8 bits (107), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 29/82 (35%), Positives = 44/82 (53%), Gaps = 2/82 (2%)
Query: 89 IEMFDYFYKFLHFWPPNLNVNKYEHMVLLDLLKKGHPEPDKKIGGGIQAFQVRYHPTY-K 147
I+M L + N V + + L++ LK HP KIG GI+ ++ +P +
Sbjct: 209 IDMRTCLQNMLREYTLNEVVTEQDKSCLIEALK-FHPRGYDKIGVGIREIKIGVNPGHPN 267
Query: 148 SRCFFLIREDETADDFSFRKCV 169
SRCF + R D+T+ DFS+ KCV
Sbjct: 268 SRCFIVQRSDDTSADFSYNKCV 289
>gi|326492962|dbj|BAJ90337.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 180
Score = 45.8 bits (107), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 22/56 (39%), Positives = 32/56 (57%), Gaps = 1/56 (1%)
Query: 115 VLLDLLKKGHPEPDKKIGGGIQAFQVRYHPTY-KSRCFFLIREDETADDFSFRKCV 169
V+ L HP + K+G G+ V HP + KSRC F++R D DFS++KC+
Sbjct: 102 VVAQKLLAYHPRAEDKVGCGLDGIMVDRHPQFRKSRCLFVVRMDGVWIDFSYQKCL 157
>gi|297837119|ref|XP_002886441.1| NRPD1a [Arabidopsis lyrata subsp. lyrata]
gi|297332282|gb|EFH62700.1| NRPD1a [Arabidopsis lyrata subsp. lyrata]
Length = 1456
Score = 45.8 bits (107), Expect = 0.013, Method: Composition-based stats.
Identities = 27/75 (36%), Positives = 36/75 (48%)
Query: 124 HPEPDKKIGGGIQAFQVRYHPTYKSRCFFLIREDETADDFSFRKCVDHMLPLPEDMKVKS 183
HP KIG G++ +V SRCF ++R D T +DFS+ KCV + KV
Sbjct: 1373 HPNSADKIGPGLKGIRVAKSKHGDSRCFEVVRIDGTFEDFSYHKCVLGATKIIAPKKVNL 1432
Query: 184 DANKALGGGGGGKGR 198
+K L G GR
Sbjct: 1433 YKSKYLKNGTHQPGR 1447
>gi|225458711|ref|XP_002283006.1| PREDICTED: protein DCL, chloroplastic [Vitis vinifera]
gi|302142270|emb|CBI19473.3| unnamed protein product [Vitis vinifera]
Length = 194
Score = 45.8 bits (107), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 20/47 (42%), Positives = 29/47 (61%), Gaps = 1/47 (2%)
Query: 124 HPEPDKKIGGGIQAFQVRYHPTYK-SRCFFLIREDETADDFSFRKCV 169
HP + KIG G+ V HP ++ SRC F++R D DFS++KC+
Sbjct: 123 HPHSEDKIGCGLDCIMVDRHPQFRHSRCLFVVRTDGGWIDFSYQKCL 169
>gi|27377294|ref|NP_768823.1| hypothetical protein bsl2183 [Bradyrhizobium japonicum USDA 110]
gi|384221336|ref|YP_005612502.1| hypothetical protein BJ6T_76690 [Bradyrhizobium japonicum USDA 6]
gi|27350437|dbj|BAC47448.1| bsl2183 [Bradyrhizobium japonicum USDA 110]
gi|354960235|dbj|BAL12914.1| hypothetical protein BJ6T_76690 [Bradyrhizobium japonicum USDA 6]
Length = 98
Score = 45.8 bits (107), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 29/92 (31%), Positives = 44/92 (47%), Gaps = 2/92 (2%)
Query: 78 VKLGPKEFGSSIEMFDYFYKFLHFWPPNLNVNKYEHMVLLDLLKKGHPEPDKKIGGGIQA 137
+ LGP F + Y LH + V + ++L L+ HP+ + K G GI
Sbjct: 6 IDLGPLHFAKRGDAVAYLNDMLHRYDVGDRVGANDTVILRAALEH-HPDAEAKKGCGITH 64
Query: 138 FQVRYHPTYKSRCFFLIREDETADDFSFRKCV 169
F VR + ++CF+L R D T + FS R C+
Sbjct: 65 FNVRT-ADFGTKCFWLNRTDGTTEKFSHRACI 95
>gi|374312057|ref|YP_005058487.1| hypothetical protein [Granulicella mallensis MP5ACTX8]
gi|358754067|gb|AEU37457.1| Protein of unknown function DUF3223 [Granulicella mallensis
MP5ACTX8]
Length = 233
Score = 45.8 bits (107), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 30/94 (31%), Positives = 46/94 (48%), Gaps = 2/94 (2%)
Query: 77 RVKLGPKEFGSSIEMFDYFYKFLHFWPPNLNVNKYEHMVLLDLLKKGHPEPDKKIGGGIQ 136
++ +G + F + ++ L+ P V + H LLDL+ HP+ D KIG G+
Sbjct: 4 QILIGERVFKTKKSAIEHMQLILNGPPMGTRVVEPGHGFLLDLVSL-HPDADSKIGCGVS 62
Query: 137 AFQVRYHPTYKSRCFFLIREDETADDFSFRKCVD 170
F + ++ RCF L R D T DFS KC +
Sbjct: 63 HFSIA-QDDFRKRCFRLYRLDGTNTDFSVYKCFE 95
>gi|83591849|ref|YP_425601.1| hypothetical protein Rru_A0510 [Rhodospirillum rubrum ATCC 11170]
gi|386348542|ref|YP_006046790.1| hypothetical protein F11_02615 [Rhodospirillum rubrum F11]
gi|83574763|gb|ABC21314.1| conserved hypothetical protein [Rhodospirillum rubrum ATCC 11170]
gi|346716978|gb|AEO46993.1| hypothetical protein F11_02615 [Rhodospirillum rubrum F11]
Length = 98
Score = 45.4 bits (106), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 29/92 (31%), Positives = 46/92 (50%), Gaps = 2/92 (2%)
Query: 78 VKLGPKEFGSSIEMFDYFYKFLHFWPPNLNVNKYEHMVLLDLLKKGHPEPDKKIGGGIQA 137
+ LGP F + Y +K LH + V+ + ++L L H + + K+G GI
Sbjct: 6 IDLGPMHFEKKEDAVAYLHKMLHRYDLGDKVSDDDAIILRAALAH-HRDAEVKVGCGITY 64
Query: 138 FQVRYHPTYKSRCFFLIREDETADDFSFRKCV 169
F VR + +RCF+L R D T + FS + C+
Sbjct: 65 FSVRT-ADFGTRCFWLNRNDGTTEKFSHKTCI 95
>gi|224136824|ref|XP_002326954.1| predicted protein [Populus trichocarpa]
gi|222835269|gb|EEE73704.1| predicted protein [Populus trichocarpa]
Length = 125
Score = 45.1 bits (105), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 21/47 (44%), Positives = 29/47 (61%), Gaps = 1/47 (2%)
Query: 124 HPEPDKKIGGGIQAFQVRYHPTYK-SRCFFLIREDETADDFSFRKCV 169
HP D K+G G+ + V H +K SRC F++R D DFS+RKC+
Sbjct: 58 HPNCDDKVGCGLDSIAVDRHSHFKTSRCLFVVRSDGGWIDFSYRKCL 104
>gi|145541656|ref|XP_001456516.1| hypothetical protein [Paramecium tetraurelia strain d4-2]
gi|124424328|emb|CAK89119.1| unnamed protein product [Paramecium tetraurelia]
Length = 351
Score = 45.1 bits (105), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 23/61 (37%), Positives = 42/61 (68%), Gaps = 3/61 (4%)
Query: 113 HMVLLDLLKKGHPEPDKKIGGGIQAFQVRYHPTY-KSRCFFLIREDETADDFSFRKCVDH 171
H +L+ LL+ H + D+K+ G ++ F V HP + ++RCFF ++ED +++DFS KC+ +
Sbjct: 287 HSMLVSLLQ-HHDKKDQKLNG-LKHFTVGQHPDHAETRCFFAVKEDGSSEDFSSLKCIKN 344
Query: 172 M 172
+
Sbjct: 345 L 345
>gi|145536073|ref|XP_001453764.1| hypothetical protein [Paramecium tetraurelia strain d4-2]
gi|124421497|emb|CAK86367.1| unnamed protein product [Paramecium tetraurelia]
Length = 351
Score = 44.7 bits (104), Expect = 0.025, Method: Compositional matrix adjust.
Identities = 23/61 (37%), Positives = 42/61 (68%), Gaps = 3/61 (4%)
Query: 113 HMVLLDLLKKGHPEPDKKIGGGIQAFQVRYHPTY-KSRCFFLIREDETADDFSFRKCVDH 171
H +L+ LL+ H + D+K+ G ++ F V HP + ++RCFF ++ED +++DFS KC+ +
Sbjct: 287 HSMLVSLLQ-YHDKKDQKLNG-LKHFTVGQHPDHAETRCFFAVKEDGSSEDFSSLKCIKN 344
Query: 172 M 172
+
Sbjct: 345 L 345
>gi|357515099|ref|XP_003627838.1| DNA-directed RNA polymerase subunit [Medicago truncatula]
gi|355521860|gb|AET02314.1| DNA-directed RNA polymerase subunit [Medicago truncatula]
Length = 2032
Score = 44.7 bits (104), Expect = 0.026, Method: Composition-based stats.
Identities = 17/51 (33%), Positives = 34/51 (66%), Gaps = 1/51 (1%)
Query: 124 HPEPDKKIGGGIQAFQVRYHPTYK-SRCFFLIREDETADDFSFRKCVDHML 173
HP+ + K+G G+ V H ++ SRC +++ +D +DFS+RKC+++++
Sbjct: 1889 HPDKETKMGVGVDHVMVSKHSNFQDSRCLYVVLKDGKKEDFSYRKCLENLV 1939
>gi|294464680|gb|ADE77847.1| unknown [Picea sitchensis]
Length = 231
Score = 44.3 bits (103), Expect = 0.038, Method: Compositional matrix adjust.
Identities = 38/137 (27%), Positives = 62/137 (45%), Gaps = 23/137 (16%)
Query: 46 GDVSKKQKIDEDEKSVEEERLEKKEVVNGSGRVKLGP--KEFGSSIEMFDYFYKFLHFWP 103
GDV + EK + +L + E+ R K K++ S + +F LH
Sbjct: 80 GDVQAQDDFVTREKEPYKNQLPEHELSTVQTRSKFPKTRKQWKSILILFHSLRGILH--- 136
Query: 104 PNLNVNKY----------EHMVLLDLLKKGHPEPDKKIGGGIQAFQVRYHPTY-KSRCFF 152
N+Y + +V+ LL HP K G GI+ + +P + KSRCF
Sbjct: 137 -----NRYRMGDIVRKEDKSIVMHALLY--HPRSKDKTGVGIEEIMIGSNPAFPKSRCFV 189
Query: 153 LIREDETADDFSFRKCV 169
++R+D + +DFS+ KC+
Sbjct: 190 VVRKDGSREDFSYHKCM 206
>gi|224072883|ref|XP_002303926.1| predicted protein [Populus trichocarpa]
gi|222841358|gb|EEE78905.1| predicted protein [Populus trichocarpa]
Length = 1020
Score = 44.3 bits (103), Expect = 0.039, Method: Composition-based stats.
Identities = 21/59 (35%), Positives = 35/59 (59%), Gaps = 1/59 (1%)
Query: 116 LLDLLKKGHPEPDKKIGGGIQAFQVRYHPTYK-SRCFFLIREDETADDFSFRKCVDHML 173
+LD + HP+ K+G GI V H ++ SRCF+++ D DFS+RKC+++ +
Sbjct: 924 VLDNVFHYHPDKAVKMGAGIDHVTVSRHSNFQESRCFYIVSTDGCKQDFSYRKCLENFI 982
>gi|38605943|emb|CAD41657.3| OSJNBa0019K04.4 [Oryza sativa Japonica Group]
Length = 1664
Score = 43.9 bits (102), Expect = 0.051, Method: Composition-based stats.
Identities = 27/80 (33%), Positives = 42/80 (52%), Gaps = 2/80 (2%)
Query: 89 IEMFDYFYKFLHFWPPNLNVNKYEHMVLLDLLKKGHPEPDKKIGGGIQAFQVRYHPTY-K 147
I+M L + N V + + L++ LK HP KIG GI+ ++ +P +
Sbjct: 1170 IDMRTSLQNMLREYTLNEVVTEQDKSCLMEALKF-HPRGYDKIGVGIREIKIGVNPGHPS 1228
Query: 148 SRCFFLIREDETADDFSFRK 167
SRCF ++R D+T DFS+ K
Sbjct: 1229 SRCFIVLRNDDTTADFSYNK 1248
>gi|297823913|ref|XP_002879839.1| NRPD1b [Arabidopsis lyrata subsp. lyrata]
gi|297325678|gb|EFH56098.1| NRPD1b [Arabidopsis lyrata subsp. lyrata]
Length = 1947
Score = 43.9 bits (102), Expect = 0.054, Method: Composition-based stats.
Identities = 21/73 (28%), Positives = 39/73 (53%), Gaps = 1/73 (1%)
Query: 102 WPPNLNVNKYEHMVLLDLLKKGHPEPDKKIGGGIQAFQVRYHPTYK-SRCFFLIREDETA 160
+P ++ + +L+ + HP+ + K+G G+ V H + SRCFF++ D
Sbjct: 1759 YPDGDPISDDDKTFVLEKILNFHPQKETKLGSGVDFITVDKHTIFSDSRCFFVVSTDGAK 1818
Query: 161 DDFSFRKCVDHML 173
DFS+RK +++ L
Sbjct: 1819 QDFSYRKSLNNYL 1831
>gi|59939212|gb|AAX12374.1| DNA-directed RNA polymerase alpha subunit [Spinacia oleracea]
Length = 1902
Score = 43.9 bits (102), Expect = 0.054, Method: Composition-based stats.
Identities = 20/60 (33%), Positives = 34/60 (56%), Gaps = 1/60 (1%)
Query: 112 EHMVLLDLLKKGHPEPDKKIGGGIQAFQVRYHPTYK-SRCFFLIREDETADDFSFRKCVD 170
+ L+D + HP+ KIG G+ V+ H ++ SRCF+++ D DFS+ KC++
Sbjct: 1787 DQTYLIDNILNYHPDKAAKIGAGVDFITVKKHSNFQESRCFYVVSTDGKDTDFSYIKCIE 1846
>gi|302817899|ref|XP_002990624.1| hypothetical protein SELMODRAFT_29280 [Selaginella moellendorffii]
gi|300141546|gb|EFJ08256.1| hypothetical protein SELMODRAFT_29280 [Selaginella moellendorffii]
Length = 78
Score = 43.5 bits (101), Expect = 0.065, Method: Compositional matrix adjust.
Identities = 20/59 (33%), Positives = 35/59 (59%), Gaps = 1/59 (1%)
Query: 116 LLDLLKKGHPEPDKKIGGGIQAFQVRYHPTYK-SRCFFLIREDETADDFSFRKCVDHML 173
+++ + HP D+K G GI +V + S CFF++R+D + DDFS+ KC+ ++
Sbjct: 15 IMEKILVHHPSYDQKAGAGIDFLKVDRPANFSDSSCFFVVRKDGSEDDFSYHKCLRSLV 73
>gi|68300849|gb|AAY89362.1| RNA polymerase IV largest subunit [Arabidopsis thaliana]
Length = 1976
Score = 43.5 bits (101), Expect = 0.068, Method: Composition-based stats.
Identities = 21/73 (28%), Positives = 39/73 (53%), Gaps = 1/73 (1%)
Query: 102 WPPNLNVNKYEHMVLLDLLKKGHPEPDKKIGGGIQAFQVRYHPTYK-SRCFFLIREDETA 160
+P ++ + +L+ + HP+ + K+G G+ V H + SRCFF++ D
Sbjct: 1759 YPDGDPISDDDKTFVLEKILNFHPQKETKLGSGVDFITVDKHTIFSDSRCFFVVSTDGAK 1818
Query: 161 DDFSFRKCVDHML 173
DFS+RK +++ L
Sbjct: 1819 QDFSYRKSLNNYL 1831
>gi|79571777|ref|NP_181532.2| nuclear RNA polymerase D1B [Arabidopsis thaliana]
gi|75320513|sp|Q5D869.1|NRPE1_ARATH RecName: Full=DNA-directed RNA polymerase E subunit 1; Short=Nuclear
RNA polymerase E 1; AltName: Full=DNA-directed RNA
polymerase D subunit 1b; Short=AtNRPD1b; Short=Nuclear
RNA polymerase D 1b; AltName: Full=Protein DEFECTIVE IN
MERISTEM SILENCING 5; AltName: Full=Protein DEFECTIVE IN
RNA-DIRECTED DNA METHYLATION 3; AltName: Full=Protein
RNA-DIRECTED DNA METHYLATION DEFECTIVE 1; AltName:
Full=RNA polymerase IV subunit 1; Short=POL IV 1
gi|59939210|gb|AAX12373.1| DNA-directed RNA polymerase alpha subunit [Arabidopsis thaliana]
gi|62822917|gb|AAY15198.1| DNA-dependent RNA polymerase large subunit [Arabidopsis thaliana]
gi|330254673|gb|AEC09767.1| nuclear RNA polymerase D1B [Arabidopsis thaliana]
Length = 1976
Score = 43.5 bits (101), Expect = 0.068, Method: Composition-based stats.
Identities = 21/73 (28%), Positives = 39/73 (53%), Gaps = 1/73 (1%)
Query: 102 WPPNLNVNKYEHMVLLDLLKKGHPEPDKKIGGGIQAFQVRYHPTYK-SRCFFLIREDETA 160
+P ++ + +L+ + HP+ + K+G G+ V H + SRCFF++ D
Sbjct: 1759 YPDGDPISDDDKTFVLEKILNFHPQKETKLGSGVDFITVDKHTIFSDSRCFFVVSTDGAK 1818
Query: 161 DDFSFRKCVDHML 173
DFS+RK +++ L
Sbjct: 1819 QDFSYRKSLNNYL 1831
>gi|428316012|ref|YP_007113894.1| hypothetical protein Osc7112_0907 [Oscillatoria nigro-viridis PCC
7112]
gi|428239692|gb|AFZ05478.1| hypothetical protein Osc7112_0907 [Oscillatoria nigro-viridis PCC
7112]
Length = 244
Score = 43.1 bits (100), Expect = 0.075, Method: Compositional matrix adjust.
Identities = 23/55 (41%), Positives = 34/55 (61%), Gaps = 2/55 (3%)
Query: 115 VLLDLLKKGHPEPDKKIGGGIQAFQVRYHPTYKSRCFFLIREDETADDFSFRKCV 169
+LL LL++ HPE DKKIG GI+ +Y + CF++ R D + DFS+R +
Sbjct: 43 MLLALLER-HPEADKKIGCGIKRL-YKYRTDMPTSCFWIERTDGSRTDFSYRTAI 95
>gi|222622188|gb|EEE56320.1| hypothetical protein OsJ_05410 [Oryza sativa Japonica Group]
Length = 2017
Score = 42.7 bits (99), Expect = 0.094, Method: Composition-based stats.
Identities = 19/51 (37%), Positives = 29/51 (56%), Gaps = 1/51 (1%)
Query: 124 HPEPDKKIGGGIQAFQVRYHPTYK-SRCFFLIREDETADDFSFRKCVDHML 173
HPE K+ G I V H ++ SRC F++ D T DFS+ KC+++ +
Sbjct: 1876 HPEKQSKVSGEIDHIMVDKHQVFQDSRCLFVVSSDGTRSDFSYLKCMENFV 1926
>gi|218190083|gb|EEC72510.1| hypothetical protein OsI_05888 [Oryza sativa Indica Group]
Length = 1867
Score = 42.7 bits (99), Expect = 0.11, Method: Composition-based stats.
Identities = 19/51 (37%), Positives = 29/51 (56%), Gaps = 1/51 (1%)
Query: 124 HPEPDKKIGGGIQAFQVRYHPTYK-SRCFFLIREDETADDFSFRKCVDHML 173
HPE K+ G I V H ++ SRC F++ D T DFS+ KC+++ +
Sbjct: 1726 HPEKQSKVSGEIDHIMVDKHQVFQDSRCLFVVSSDGTRSDFSYLKCMENFV 1776
>gi|222629403|gb|EEE61535.1| hypothetical protein OsJ_15844 [Oryza sativa Japonica Group]
Length = 1623
Score = 42.4 bits (98), Expect = 0.13, Method: Composition-based stats.
Identities = 26/78 (33%), Positives = 41/78 (52%), Gaps = 2/78 (2%)
Query: 89 IEMFDYFYKFLHFWPPNLNVNKYEHMVLLDLLKKGHPEPDKKIGGGIQAFQVRYHPTY-K 147
I+M L + N V + + L++ LK HP KIG GI+ ++ +P +
Sbjct: 1302 IDMRTSLQNMLREYTLNEVVTEQDKSCLMEALKF-HPRGYDKIGVGIREIKIGVNPGHPS 1360
Query: 148 SRCFFLIREDETADDFSF 165
SRCF ++R D+T DFS+
Sbjct: 1361 SRCFIVLRNDDTTADFSY 1378
>gi|218195401|gb|EEC77828.1| hypothetical protein OsI_17044 [Oryza sativa Indica Group]
Length = 1598
Score = 42.4 bits (98), Expect = 0.15, Method: Composition-based stats.
Identities = 26/78 (33%), Positives = 41/78 (52%), Gaps = 2/78 (2%)
Query: 89 IEMFDYFYKFLHFWPPNLNVNKYEHMVLLDLLKKGHPEPDKKIGGGIQAFQVRYHPTY-K 147
I+M L + N V + + L++ LK HP KIG GI+ ++ +P +
Sbjct: 1281 IDMRTSLQNMLREYTLNEVVTEQDKSCLIEALKF-HPRGYDKIGVGIREIKIGVNPGHPS 1339
Query: 148 SRCFFLIREDETADDFSF 165
SRCF ++R D+T DFS+
Sbjct: 1340 SRCFIVLRNDDTTADFSY 1357
>gi|414170524|ref|ZP_11426078.1| hypothetical protein HMPREF9696_03933 [Afipia clevelandensis ATCC
49720]
gi|410884302|gb|EKS32130.1| hypothetical protein HMPREF9696_03933 [Afipia clevelandensis ATCC
49720]
Length = 216
Score = 41.6 bits (96), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 24/78 (30%), Positives = 43/78 (55%), Gaps = 2/78 (2%)
Query: 93 DYFYKFLHFWPPNLNVNKYEHMVLLDLLKKGHPEPDKKIGGGIQAFQVRYHPTYKSRCFF 152
++F + L P + +++ + + LL++ HPE KIG G++ F R + +RCF
Sbjct: 21 EHFRQILRRHDPGVALSEPDATQVYWLLER-HPEAAVKIGAGVKEFSTR-SAMFDTRCFE 78
Query: 153 LIREDETADDFSFRKCVD 170
+ R D + DFS + C+D
Sbjct: 79 IRRIDGSTTDFSVKPCLD 96
>gi|398822027|ref|ZP_10580417.1| Protein of unknown function (DUF3223) [Bradyrhizobium sp. YR681]
gi|398227312|gb|EJN13544.1| Protein of unknown function (DUF3223) [Bradyrhizobium sp. YR681]
Length = 97
Score = 40.0 bits (92), Expect = 0.62, Method: Compositional matrix adjust.
Identities = 17/46 (36%), Positives = 28/46 (60%), Gaps = 1/46 (2%)
Query: 124 HPEPDKKIGGGIQAFQVRYHPTYKSRCFFLIREDETADDFSFRKCV 169
HP K+G GI F VR + S+CF++ R D +++ FS++ C+
Sbjct: 51 HPNATAKMGLGITHFSVR-SANFGSKCFWVNRVDGSSEKFSYKACI 95
Database: nr
Posted date: Mar 3, 2013 10:45 PM
Number of letters in database: 999,999,864
Number of sequences in database: 2,912,245
Database: /local_scratch/syshi//blastdatabase/nr.01
Posted date: Mar 3, 2013 10:52 PM
Number of letters in database: 999,999,666
Number of sequences in database: 2,912,720
Database: /local_scratch/syshi//blastdatabase/nr.02
Posted date: Mar 3, 2013 10:58 PM
Number of letters in database: 999,999,938
Number of sequences in database: 3,014,250
Database: /local_scratch/syshi//blastdatabase/nr.03
Posted date: Mar 3, 2013 11:03 PM
Number of letters in database: 999,999,780
Number of sequences in database: 2,805,020
Database: /local_scratch/syshi//blastdatabase/nr.04
Posted date: Mar 3, 2013 11:08 PM
Number of letters in database: 999,999,551
Number of sequences in database: 2,816,253
Database: /local_scratch/syshi//blastdatabase/nr.05
Posted date: Mar 3, 2013 11:13 PM
Number of letters in database: 999,999,897
Number of sequences in database: 2,981,387
Database: /local_scratch/syshi//blastdatabase/nr.06
Posted date: Mar 3, 2013 11:18 PM
Number of letters in database: 999,999,649
Number of sequences in database: 2,911,476
Database: /local_scratch/syshi//blastdatabase/nr.07
Posted date: Mar 3, 2013 11:24 PM
Number of letters in database: 999,999,452
Number of sequences in database: 2,920,260
Database: /local_scratch/syshi//blastdatabase/nr.08
Posted date: Mar 3, 2013 11:25 PM
Number of letters in database: 64,230,274
Number of sequences in database: 189,558
Lambda K H
0.312 0.138 0.410
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 4,390,619,524
Number of Sequences: 23463169
Number of extensions: 228134531
Number of successful extensions: 3191035
Number of sequences better than 100.0: 1000
Number of HSP's better than 100.0 without gapping: 10302
Number of HSP's successfully gapped in prelim test: 5901
Number of HSP's that attempted gapping in prelim test: 2492563
Number of HSP's gapped (non-prelim): 529834
length of query: 222
length of database: 8,064,228,071
effective HSP length: 137
effective length of query: 85
effective length of database: 9,144,741,214
effective search space: 777303003190
effective search space used: 777303003190
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.8 bits)
S2: 74 (33.1 bits)