BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 027552
         (222 letters)

Database: swissprot 
           539,616 sequences; 191,569,459 total letters

Searching..................................................done



>sp|Q42463|DCL_SOLLC Protein DCL, chloroplastic OS=Solanum lycopersicum GN=DCL PE=2 SV=1
          Length = 224

 Score = 56.6 bits (135), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 26/60 (43%), Positives = 37/60 (61%), Gaps = 1/60 (1%)

Query: 115 VLLDLLKKGHPEPDKKIGGGIQAFQVRYHPTYK-SRCFFLIREDETADDFSFRKCVDHML 173
            +L  L   HPE DKKIG G+    V YHP ++ SRC F++R+D    DFS+ KC+  ++
Sbjct: 142 TILQRLLPYHPECDKKIGPGVDYITVGYHPDFENSRCLFIVRKDGETVDFSYWKCIKGLI 201


>sp|Q5D869|NRPE1_ARATH DNA-directed RNA polymerase E subunit 1 OS=Arabidopsis thaliana
            GN=NRPE1 PE=1 SV=1
          Length = 1976

 Score = 43.5 bits (101), Expect = 0.001,   Method: Composition-based stats.
 Identities = 21/73 (28%), Positives = 39/73 (53%), Gaps = 1/73 (1%)

Query: 102  WPPNLNVNKYEHMVLLDLLKKGHPEPDKKIGGGIQAFQVRYHPTYK-SRCFFLIREDETA 160
            +P    ++  +   +L+ +   HP+ + K+G G+    V  H  +  SRCFF++  D   
Sbjct: 1759 YPDGDPISDDDKTFVLEKILNFHPQKETKLGSGVDFITVDKHTIFSDSRCFFVVSTDGAK 1818

Query: 161  DDFSFRKCVDHML 173
             DFS+RK +++ L
Sbjct: 1819 QDFSYRKSLNNYL 1831


>sp|Q9LQ02|NRPD1_ARATH DNA-directed RNA polymerase D subunit 1 OS=Arabidopsis thaliana
            GN=NRPD1 PE=1 SV=1
          Length = 1453

 Score = 42.4 bits (98), Expect = 0.002,   Method: Composition-based stats.
 Identities = 24/73 (32%), Positives = 41/73 (56%), Gaps = 1/73 (1%)

Query: 97   KFLHFWPPNLNVNKYEHMVLLDLLKKGHPEPDKKIGGGIQAFQVRYHPTYKSRCFFLIRE 156
            + LH +  N  +N+ +   L+ ++ + HP   +KIG G++  +V       S CF ++R 
Sbjct: 1348 RILHSYEINELLNERDEG-LVKMVLQLHPNSVEKIGPGVKGIRVAKSKHGDSCCFEVVRI 1406

Query: 157  DETADDFSFRKCV 169
            D T +DFS+ KCV
Sbjct: 1407 DGTFEDFSYHKCV 1419


  Database: swissprot
    Posted date:  Mar 23, 2013  2:32 AM
  Number of letters in database: 191,569,459
  Number of sequences in database:  539,616
  
Lambda     K      H
   0.312    0.138    0.410 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 106,021,664
Number of Sequences: 539616
Number of extensions: 5570274
Number of successful extensions: 77008
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 1082
Number of HSP's successfully gapped in prelim test: 463
Number of HSP's that attempted gapping in prelim test: 39736
Number of HSP's gapped (non-prelim): 22656
length of query: 222
length of database: 191,569,459
effective HSP length: 113
effective length of query: 109
effective length of database: 130,592,851
effective search space: 14234620759
effective search space used: 14234620759
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.8 bits)
S2: 59 (27.3 bits)