Query 027552
Match_columns 222
No_of_seqs 132 out of 165
Neff 4.2
Searched_HMMs 29240
Date Mon Mar 25 19:43:25 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/027552.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/027552hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2k0m_A Uncharacterized protein 100.0 3E-40 1E-44 259.0 7.7 98 73-172 2-99 (104)
2 1h2v_Z 20 kDa nuclear CAP bind 90.0 0.29 9.9E-06 37.8 4.0 44 116-172 56-101 (156)
3 3pgw_S U1-70K; protein-RNA com 88.5 0.86 2.9E-05 42.0 6.7 29 114-151 117-146 (437)
4 2pk2_A Cyclin-T1, protein TAT; 87.4 0.11 3.8E-06 47.0 0.0 7 166-172 235-241 (358)
5 3q2s_C Cleavage and polyadenyl 80.2 4.5 0.00015 33.7 6.9 47 114-172 83-132 (229)
6 1uzc_A Hypothetical protein FL 49.3 18 0.00062 25.7 3.8 41 83-128 9-50 (71)
7 2l6f_A Focal adhesion kinase 1 44.8 6.5 0.00022 34.1 0.0 10 89-98 79-88 (215)
8 3ex7_B RNA-binding protein 8A; 36.3 57 0.002 23.5 4.9 30 114-152 37-67 (126)
9 2l6f_A Focal adhesion kinase 1 40.5 8.5 0.00029 33.4 0.0 7 135-141 125-131 (215)
10 1h2v_Z 20 kDa nuclear CAP bind 33.8 11 0.00037 28.7 0.6 26 73-98 37-63 (156)
11 2k9n_A MYB24; R2R3 domain, DNA 33.6 78 0.0027 23.1 5.3 38 86-123 34-71 (107)
12 2zjr_I 50S ribosomal protein L 33.4 55 0.0019 26.4 4.7 35 169-204 3-37 (156)
13 2dod_A Transcription elongatio 32.6 50 0.0017 24.1 4.0 42 83-128 11-52 (82)
14 2xzm_7 Plectin/S10 domain cont 32.5 20 0.00069 29.8 2.0 34 146-182 59-95 (162)
15 3pgw_S U1-70K; protein-RNA com 32.4 28 0.00096 31.9 3.2 22 76-97 103-125 (437)
16 2hh3_A KH-type splicing regula 31.1 10 0.00035 28.5 0.0 22 158-181 62-83 (106)
17 1gv2_A C-MYB, MYB proto-oncoge 29.7 69 0.0023 23.1 4.4 38 86-123 37-74 (105)
18 2o8i_A AGR_C_4230P, hypothetic 29.1 28 0.00097 28.2 2.3 39 83-131 32-70 (165)
19 3zqc_A MYB3; transcription-DNA 28.8 1E+02 0.0035 23.3 5.4 39 86-124 35-73 (131)
20 2cr7_A Paired amphipathic heli 28.6 14 0.00048 26.7 0.4 42 84-127 23-65 (80)
21 2o70_A OHCU decarboxylase; URI 28.6 64 0.0022 26.3 4.4 40 82-131 35-74 (174)
22 4h1k_B Nuclear polyadenylated 27.2 42 0.0014 21.7 2.4 9 196-204 12-20 (38)
23 3o7i_A OHCU decarboxylase; lya 26.6 87 0.003 26.1 4.9 40 82-131 58-97 (189)
24 3osg_A MYB21; transcription-DN 25.7 84 0.0029 23.7 4.4 38 86-123 43-80 (126)
25 3bbo_N Ribosomal protein L15; 25.6 49 0.0017 29.1 3.4 21 168-188 66-86 (257)
26 2krx_A ASL3597 protein; struct 24.6 81 0.0028 23.9 4.0 61 82-145 20-87 (94)
27 1h8a_C AMV V-MYB, MYB transfor 23.9 1E+02 0.0036 23.0 4.6 38 86-123 60-97 (128)
28 1f15_A Coat protein; beta barr 23.7 63 0.0022 27.7 3.6 32 134-165 103-136 (218)
29 2czy_A Paired amphipathic heli 23.5 20 0.00068 25.7 0.4 42 84-127 17-59 (77)
30 2hh3_A KH-type splicing regula 21.4 11 0.00039 28.3 -1.4 22 163-184 61-82 (106)
No 1
>2k0m_A Uncharacterized protein; structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Rhodospirillum rubrum atcc 11170}
Probab=100.00 E-value=3e-40 Score=259.00 Aligned_cols=98 Identities=28% Similarity=0.615 Sum_probs=94.8
Q ss_pred cCCCceeeCCcccCCHHHHHHHHHHhhhcCCCCCCcChhhHHHHHHHHhhCCCCcccccCCCceeEEeeeCCCCCcceeE
Q 027552 73 NGSGRVKLGPKEFGSSIEMFDYFYKFLHFWPPNLNVNKYEHMVLLDLLKKGHPEPDKKIGGGIQAFQVRYHPTYKSRCFF 152 (222)
Q Consensus 73 ~~~kPV~LG~k~F~S~~ea~~yFr~IL~~y~~g~~L~e~D~~vL~eLL~~yHPd~e~KIG~GI~~i~V~~hp~~~sRCFf 152 (222)
++++||+||+++|+|+++|++||+.||++|++++.|+++|+.+|++||. |||+++.|||+||++|+|++| .|.|||||
T Consensus 2 ~~akpv~lG~~~F~s~~~~~~~~k~iL~~y~~g~~l~~~d~~~l~~lL~-~HP~~~~KiG~Gi~~i~V~~h-~~~srCFf 79 (104)
T 2k0m_A 2 AKAQPIEIAGHEFARKADALAFMKVMLNRYRPGDIVSTVDGAFLVEALK-RHPDATSKIGPGVRNFEVRSA-DYGTQCFW 79 (104)
T ss_dssp CCCCCEEETTEEESSHHHHHHHHHHHHHHSCTTEECCHHHHHHHHHHHH-TSTTHHHHHTTCEEEEEEEES-SSSCEEEE
T ss_pred CCCCCeEECCEecCCHHHHHHHHHHHHHhCCCCCccCHHHHHHHHHHHH-hCCcHHHhcCCCcceEEEecC-CCCCcEEE
Confidence 4789999999999999999999999999999999999999999999996 999999999999999999999 78999999
Q ss_pred EEecCCCcccccHHHHhhhc
Q 027552 153 LIREDETADDFSFRKCVDHM 172 (222)
Q Consensus 153 VvR~DGt~eDFSY~KCi~~~ 172 (222)
|||+|||.+||||+|||++-
T Consensus 80 vvR~DGt~~DFSy~KCv~~~ 99 (104)
T 2k0m_A 80 ILRTDGSEERFSYKKCVLEH 99 (104)
T ss_dssp EEETTSCEEECCGGGSSCCT
T ss_pred EEEeCCCeeeeeHHHHhhhh
Confidence 99999999999999999874
No 2
>1h2v_Z 20 kDa nuclear CAP binding protein; CAP-binding-complex, RNP domain, MIF4G domain, RNA maturation, RNA export, nuclear protein, RNA-binding; 2.0A {Homo sapiens} SCOP: d.58.7.1 PDB: 1h2u_X* 1h2t_Z 1n52_B* 1n54_B 3fex_B 3fey_B 1h6k_X
Probab=90.00 E-value=0.29 Score=37.75 Aligned_cols=44 Identities=14% Similarity=0.209 Sum_probs=24.2
Q ss_pred HHHHHhhCCCCcccccCCCceeEEeeeCCCC-Cccee-EEEecCCCcccccHHHHhhhc
Q 027552 116 LLDLLKKGHPEPDKKIGGGIQAFQVRYHPTY-KSRCF-FLIREDETADDFSFRKCVDHM 172 (222)
Q Consensus 116 L~eLL~~yHPd~e~KIG~GI~~i~V~~hp~~-~sRCF-fVvR~DGt~eDFSY~KCi~~~ 172 (222)
|.++|.. .| -|..|.|-.++.- .+++| ||...+- =+-.+||..+
T Consensus 56 l~~~F~~--------~G-~i~~v~i~~~~~~~~~~g~afV~f~~~----~~A~~Ai~~l 101 (156)
T 1h2v_Z 56 IYELFSK--------SG-DIKKIIMGLDKMKKTACGFCFVEYYSR----ADAENAMRYI 101 (156)
T ss_dssp HHHHHGG--------GS-CEEEEEEEECTTTCCEEEEEEEEESSH----HHHHHHHHHT
T ss_pred HHHHHHh--------cC-CeEEEEEEecCCCCccceEEEEEECCH----HHHHHHHHHh
Confidence 6777753 33 3788888776653 35555 3443321 1345666644
No 3
>3pgw_S U1-70K; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 3cw1_K 2l5i_A 2l5j_A*
Probab=88.49 E-value=0.86 Score=42.04 Aligned_cols=29 Identities=21% Similarity=0.220 Sum_probs=16.1
Q ss_pred HHHHHHHhhCCCCcccccCCCceeEEeeeCCC-CCccee
Q 027552 114 MVLLDLLKKGHPEPDKKIGGGIQAFQVRYHPT-YKSRCF 151 (222)
Q Consensus 114 ~vL~eLL~~yHPd~e~KIG~GI~~i~V~~hp~-~~sRCF 151 (222)
..|..+|..| | -|..|.|-.++. ..+++|
T Consensus 117 ~~L~~~F~~~--------G-~I~~v~i~~d~~tg~~kG~ 146 (437)
T 3pgw_S 117 SKLRREFEVY--------G-PIKRIHMVYSKRSGKPRGY 146 (437)
T ss_pred HHHHHHHHHc--------C-CeeEEEeeccCCCCCccce
Confidence 3477777632 3 377777765543 234544
No 4
>2pk2_A Cyclin-T1, protein TAT; TAR, twinning, transcription regulation P- TEFB, cell cycle; 2.67A {Homo sapiens} SCOP: a.74.1.1 a.74.1.1 PDB: 2w2h_C
Probab=87.40 E-value=0.11 Score=47.01 Aligned_cols=7 Identities=0% Similarity=0.088 Sum_probs=2.9
Q ss_pred HHHhhhc
Q 027552 166 RKCVDHM 172 (222)
Q Consensus 166 ~KCi~~~ 172 (222)
+.|+..+
T Consensus 235 ~~i~~~i 241 (358)
T 2pk2_A 235 DELTHEF 241 (358)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 4444333
No 5
>3q2s_C Cleavage and polyadenylation specificity factor S; CFIM, CFIM25, CFIM68, CPSF5, CPSF6, CPSF, 3' END processing, processing, cleavage factor; 2.90A {Homo sapiens} PDB: 3q2t_C
Probab=80.21 E-value=4.5 Score=33.73 Aligned_cols=47 Identities=19% Similarity=0.186 Sum_probs=28.1
Q ss_pred HHHHHHHhhCCCCcccccCC-CceeEEeeeCCCC-CcceeE-EEecCCCcccccHHHHhhhc
Q 027552 114 MVLLDLLKKGHPEPDKKIGG-GIQAFQVRYHPTY-KSRCFF-LIREDETADDFSFRKCVDHM 172 (222)
Q Consensus 114 ~vL~eLL~~yHPd~e~KIG~-GI~~i~V~~hp~~-~sRCFf-VvR~DGt~eDFSY~KCi~~~ 172 (222)
..|.++|.. .|+ -|..|.|-.+..- .++||- |...+-. +..+||..+
T Consensus 83 ~~L~~~F~~--------~G~~~v~~v~i~~d~~tg~skGfaFV~f~~~~----~a~~Ai~~l 132 (229)
T 3q2s_C 83 EDLTEAVHS--------LGVNDILEIKFFENRANGQSKGFALVGVGSEA----SSKKLMDLL 132 (229)
T ss_dssp HHHHHHHHT--------TTCCCEEEEEEEECTTTCCEEEEEEEEESCTT----HHHHHHTTS
T ss_pred HHHHHHHHH--------HCCcceEEEEEEecCCCCccceEEEEEECCHH----HHHHHHHHc
Confidence 347888863 343 4888888776543 577774 4444322 456777644
No 6
>1uzc_A Hypothetical protein FLJ21157; nuclear protein, structure, transcription, phosphopeptide recognition, RNA polymerase II carboxyl- terminal domain; NMR {Homo sapiens} SCOP: a.159.2.1 PDB: 2kzg_A 2lks_A 2l9v_A
Probab=49.32 E-value=18 Score=25.72 Aligned_cols=41 Identities=10% Similarity=0.060 Sum_probs=28.3
Q ss_pred cccCCHHHHHHHHHHhhhcCCCCCCcChh-hHHHHHHHHhhCCCCcc
Q 027552 83 KEFGSSIEMFDYFYKFLHFWPPNLNVNKY-EHMVLLDLLKKGHPEPD 128 (222)
Q Consensus 83 k~F~S~~ea~~yFr~IL~~y~~g~~L~e~-D~~vL~eLL~~yHPd~e 128 (222)
-.|+|+.++...|+.||..+.. +.. -...++..|. .+|.+.
T Consensus 9 ~~~~t~eea~~~F~~LL~e~~V----~~~~tWe~~~~~i~-~DpRY~ 50 (71)
T 1uzc_A 9 YTWNTKEEAKQAFKELLKEKRV----PSNASWEQAMKMII-NDPRYS 50 (71)
T ss_dssp CCCCSHHHHHHHHHHHHHHTTC----CTTCCHHHHHHHHH-TSGGGG
T ss_pred CCCCCHHHHHHHHHHHHHHcCc----CCCCCHHHHHHHHc-cCcccc
Confidence 4699999999999999999753 333 2222334554 677763
No 7
>2l6f_A Focal adhesion kinase 1, linker1, paxillin, linke paxillin; FAT, FAK, LD2, LD4, fusion protein, chimera protei transferase,cell adhesion; NMR {Gallus gallus} PDB: 2l6g_A 2l6h_A
Probab=44.84 E-value=6.5 Score=34.06 Aligned_cols=10 Identities=10% Similarity=0.285 Sum_probs=5.2
Q ss_pred HHHHHHHHHh
Q 027552 89 IEMFDYFYKF 98 (222)
Q Consensus 89 ~ea~~yFr~I 98 (222)
++|.++...|
T Consensus 79 KDM~ELIsaM 88 (215)
T 2l6f_A 79 SDLAELINKM 88 (215)
Confidence 4455555555
No 8
>3ex7_B RNA-binding protein 8A; protein-RNA complex, mRNA processing, mRNA splicing, mRNA transport, nonsense-mediated mRNA decay, nucleus; HET: ADP; 2.30A {Homo sapiens} PDB: 2j0q_D*
Probab=36.32 E-value=57 Score=23.46 Aligned_cols=30 Identities=10% Similarity=0.121 Sum_probs=17.2
Q ss_pred HHHHHHHhhCCCCcccccCCCceeEEeeeCCC-CCcceeE
Q 027552 114 MVLLDLLKKGHPEPDKKIGGGIQAFQVRYHPT-YKSRCFF 152 (222)
Q Consensus 114 ~vL~eLL~~yHPd~e~KIG~GI~~i~V~~hp~-~~sRCFf 152 (222)
..|.++|.. .| -|..|.|-.++. ..+++|-
T Consensus 37 ~~l~~~F~~--------~G-~i~~v~i~~~~~~~~~~g~a 67 (126)
T 3ex7_B 37 EDIHDKFAE--------YG-EIKNIHLNLDRRTGYLKGYT 67 (126)
T ss_dssp HHHHHHHHT--------TS-CEEEEECCBCTTTSSBCSCE
T ss_pred HHHHHHHHh--------cC-CeEEEEEEecCCCCccceEE
Confidence 347777763 33 477887776653 3345443
No 9
>2l6f_A Focal adhesion kinase 1, linker1, paxillin, linke paxillin; FAT, FAK, LD2, LD4, fusion protein, chimera protei transferase,cell adhesion; NMR {Gallus gallus} PDB: 2l6g_A 2l6h_A
Probab=40.45 E-value=8.5 Score=33.35 Aligned_cols=7 Identities=14% Similarity=0.401 Sum_probs=3.0
Q ss_pred ceeEEee
Q 027552 135 IQAFQVR 141 (222)
Q Consensus 135 I~~i~V~ 141 (222)
|+.+.|+
T Consensus 125 VD~aRi~ 131 (215)
T 2l6f_A 125 IDQARLK 131 (215)
Confidence 4444444
No 10
>1h2v_Z 20 kDa nuclear CAP binding protein; CAP-binding-complex, RNP domain, MIF4G domain, RNA maturation, RNA export, nuclear protein, RNA-binding; 2.0A {Homo sapiens} SCOP: d.58.7.1 PDB: 1h2u_X* 1h2t_Z 1n52_B* 1n54_B 3fex_B 3fey_B 1h6k_X
Probab=33.75 E-value=11 Score=28.69 Aligned_cols=26 Identities=19% Similarity=0.353 Sum_probs=18.3
Q ss_pred cCCCceeeCCccc-CCHHHHHHHHHHh
Q 027552 73 NGSGRVKLGPKEF-GSSIEMFDYFYKF 98 (222)
Q Consensus 73 ~~~kPV~LG~k~F-~S~~ea~~yFr~I 98 (222)
.....|.|++..+ .|..++..+|..+
T Consensus 37 ~~~~~l~V~nlp~~~t~~~l~~~F~~~ 63 (156)
T 1h2v_Z 37 KKSCTLYVGNLSFYTTEEQIYELFSKS 63 (156)
T ss_dssp TTCCEEEEESCCTTCCHHHHHHHHGGG
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhc
Confidence 3456788887665 4778888888654
No 11
>2k9n_A MYB24; R2R3 domain, DNA-binding, nucleus, DNA binding protein; NMR {Trichomonas vaginalis} PDB: 2kdz_A
Probab=33.61 E-value=78 Score=23.13 Aligned_cols=38 Identities=8% Similarity=-0.048 Sum_probs=32.9
Q ss_pred CCHHHHHHHHHHhhhcCCCCCCcChhhHHHHHHHHhhC
Q 027552 86 GSSIEMFDYFYKFLHFWPPNLNVNKYEHMVLLDLLKKG 123 (222)
Q Consensus 86 ~S~~ea~~yFr~IL~~y~~g~~L~e~D~~vL~eLL~~y 123 (222)
.|..+++.++...|+-.....+.+.+|...|+.++..|
T Consensus 34 Rt~~qcr~Rw~~~L~p~i~~~~WT~eEd~~L~~~~~~~ 71 (107)
T 2k9n_A 34 RNPRQCRERWNNYINPALRTDPWSPEEDMLLDQKYAEY 71 (107)
T ss_dssp SCHHHHHHHHHHHSSSCCTTCCCCHHHHHHHHHHHHHT
T ss_pred CCHHHHHHHHHHHHcccccccccCHHHHHHHHHHHHHh
Confidence 57899999999999987778889999888888888754
No 12
>2zjr_I 50S ribosomal protein L15; ribosome, large ribosomal subunit, ribonucleoprotein, RNA-binding, rRNA-binding, tRNA-binding, methylation; 2.91A {Deinococcus radiodurans} SCOP: c.12.1.1 PDB: 1nwx_J* 1nwy_J* 1sm1_J* 1xbp_J* 2zjp_I* 2zjq_I 1nkw_J 3cf5_I* 3dll_I* 3pio_I* 3pip_I* 1pnu_J 1pny_J 1vor_M 1vou_M 1vow_M 1voy_M 1vp0_M
Probab=33.38 E-value=55 Score=26.44 Aligned_cols=35 Identities=20% Similarity=0.407 Sum_probs=15.9
Q ss_pred hhhcCCCchhhccccccccCCCCCCCCCCCCCCCCC
Q 027552 169 VDHMLPLPEDMKVKSDANKALGGGGGGKGRGGGRGG 204 (222)
Q Consensus 169 i~~~~p~~~~~~~k~~~~~~gg~~~g~~~~~~~~~~ 204 (222)
+.+|-|.|-+-+.+.+-.++-| |.|.-.|+|-.|.
T Consensus 3 L~~L~p~~gs~~~~kRvGRG~g-g~Gkt~GrG~KGq 37 (156)
T 2zjr_I 3 LHDLKPTPGSRKDRKRVGRGPG-GTDKTAGRGHKGQ 37 (156)
T ss_dssp -CCCCCCSSTTTCCCCSSSCCC-CCCSCSSSCCCCS
T ss_pred cccCCCCCCCccCCcccCCCCC-CCCCcCCCCCCCC
Confidence 4566676655555444444333 3333333333333
No 13
>2dod_A Transcription elongation regulator 1; FF domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: a.159.2.1
Probab=32.62 E-value=50 Score=24.06 Aligned_cols=42 Identities=12% Similarity=0.014 Sum_probs=28.5
Q ss_pred cccCCHHHHHHHHHHhhhcCCCCCCcChhhHHHHHHHHhhCCCCcc
Q 027552 83 KEFGSSIEMFDYFYKFLHFWPPNLNVNKYEHMVLLDLLKKGHPEPD 128 (222)
Q Consensus 83 k~F~S~~ea~~yFr~IL~~y~~g~~L~e~D~~vL~eLL~~yHPd~e 128 (222)
+.+.|+.++...|+.||..+..+- .+.-|.. +.+|. .+|.+.
T Consensus 11 ~~~~t~eea~~~Fk~LL~e~~V~p-~~tWe~~--~~~i~-~DpRY~ 52 (82)
T 2dod_A 11 RAIVPLEARMKQFKDMLLERGVSA-FSTWEKE--LHKIV-FDPRYL 52 (82)
T ss_dssp SSSCCHHHHHHHHHHHHHHTTCCS-SSCHHHH--HHHHH-TCSGGG
T ss_pred cccCCHHHHHHHHHHHHHHcCcCC-CCCHHHH--HHHHc-cCCccc
Confidence 457799999999999999975422 2222433 25554 688774
No 14
>2xzm_7 Plectin/S10 domain containing protein; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_7
Probab=32.53 E-value=20 Score=29.79 Aligned_cols=34 Identities=9% Similarity=0.133 Sum_probs=20.3
Q ss_pred CCcceeEEEecCCCcccccHHHHhhhcCCC---chhhccc
Q 027552 146 YKSRCFFLIREDETADDFSFRKCVDHMLPL---PEDMKVK 182 (222)
Q Consensus 146 ~~sRCFfVvR~DGt~eDFSY~KCi~~~~p~---~~~~~~k 182 (222)
|.+|.||..-+| +-+.|-.+.-+|.+. |+.++..
T Consensus 59 FaWrhyYw~LTn---EGIeYLR~yLhLP~e~IVPaTlk~~ 95 (162)
T 2xzm_7 59 FNWGFTYYYLNK---EGCEYLKTKLGISADNVIPKTFKAS 95 (162)
T ss_dssp EETTEEEEEECH---HHHHHHHHHHCSSTTSCCCGGGSCC
T ss_pred eeeEEEEEEEch---HHHHHHHHHhCCCccccccchhccc
Confidence 566666655544 446677777666654 5555543
No 15
>3pgw_S U1-70K; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 3cw1_K 2l5i_A 2l5j_A*
Probab=32.41 E-value=28 Score=31.87 Aligned_cols=22 Identities=5% Similarity=0.052 Sum_probs=14.0
Q ss_pred CceeeCCcccC-CHHHHHHHHHH
Q 027552 76 GRVKLGPKEFG-SSIEMFDYFYK 97 (222)
Q Consensus 76 kPV~LG~k~F~-S~~ea~~yFr~ 97 (222)
..|.|++..|. |..+|..+|..
T Consensus 103 ~~lfV~nL~~~~te~~L~~~F~~ 125 (437)
T 3pgw_S 103 KTLFVARVNYDTTESKLRREFEV 125 (437)
T ss_pred CEEEEeCCCCCCCHHHHHHHHHH
Confidence 45777776653 55667777764
No 16
>2hh3_A KH-type splicing regulatory protein; KH-RNA binding domain, RNA binding protein; NMR {Homo sapiens}
Probab=31.07 E-value=10 Score=28.54 Aligned_cols=22 Identities=9% Similarity=0.148 Sum_probs=10.8
Q ss_pred CCcccccHHHHhhhcCCCchhhcc
Q 027552 158 ETADDFSFRKCVDHMLPLPEDMKV 181 (222)
Q Consensus 158 Gt~eDFSY~KCi~~~~p~~~~~~~ 181 (222)
|+.+ +..+|+.-+..+..+...
T Consensus 62 G~~e--~v~~A~~~I~~ii~~~~~ 83 (106)
T 2hh3_A 62 GPPD--RCEHAARIINDLLQSLRS 83 (106)
T ss_dssp SSHH--HHHHHHHHHHHHHHHHC-
T ss_pred eCHH--HHHHHHHHHHHHHhcccc
Confidence 5533 456666655544444433
No 17
>1gv2_A C-MYB, MYB proto-oncogene protein; transcription, DNA binding, ION binding; 1.68A {Mus musculus} SCOP: a.4.1.3 a.4.1.3 PDB: 1mse_C* 1msf_C* 1a5j_A 1idy_A 1idz_A 1mbj_A 1mbk_A
Probab=29.68 E-value=69 Score=23.14 Aligned_cols=38 Identities=8% Similarity=-0.040 Sum_probs=32.7
Q ss_pred CCHHHHHHHHHHhhhcCCCCCCcChhhHHHHHHHHhhC
Q 027552 86 GSSIEMFDYFYKFLHFWPPNLNVNKYEHMVLLDLLKKG 123 (222)
Q Consensus 86 ~S~~ea~~yFr~IL~~y~~g~~L~e~D~~vL~eLL~~y 123 (222)
.|..+++.++...|+-.......+.+|...|+.++..|
T Consensus 37 Rt~~qcr~Rw~~~l~p~~~~~~Wt~eEd~~L~~~~~~~ 74 (105)
T 1gv2_A 37 RIGKQCRERWHNHLNPEVKKTSWTEEEDRIIYQAHKRL 74 (105)
T ss_dssp CCHHHHHHHHHHTTCCCCCCCCCCHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHhccCCcccccCCCHHHHHHHHHHHHHh
Confidence 68899999999999987778889999888899888744
No 18
>2o8i_A AGR_C_4230P, hypothetical protein ATU2327; agrobacterium tumefaciens STR. C58, structural GENO PSI-2, protein structure initiative; 2.60A {Agrobacterium tumefaciens str} SCOP: a.288.1.1
Probab=29.07 E-value=28 Score=28.19 Aligned_cols=39 Identities=13% Similarity=0.106 Sum_probs=31.7
Q ss_pred cccCCHHHHHHHHHHhhhcCCCCCCcChhhHHHHHHHHhhCCCCccccc
Q 027552 83 KEFGSSIEMFDYFYKFLHFWPPNLNVNKYEHMVLLDLLKKGHPEPDKKI 131 (222)
Q Consensus 83 k~F~S~~ea~~yFr~IL~~y~~g~~L~e~D~~vL~eLL~~yHPd~e~KI 131 (222)
+.|.|..++...+..++..+.. ..++++|. .||+...|.
T Consensus 32 rPf~s~~~L~~a~~~~~~~~~~---------~~~~~~l~-aHP~lg~~~ 70 (165)
T 2o8i_A 32 GLELTAKAVHGALCAQFRVASE---------AERLGVLR-AHPDLAGKL 70 (165)
T ss_dssp GSCSSHHHHHHHHHHHHHHSCH---------HHHHHHHH-HSCCHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHhCCH---------HHHHHHHH-hCCcccccc
Confidence 6899999999999999998653 34778885 899976554
No 19
>3zqc_A MYB3; transcription-DNA complex, DNA-binding protein, nucleus; 2.90A {Trichomonas vaginalis}
Probab=28.77 E-value=1e+02 Score=23.29 Aligned_cols=39 Identities=10% Similarity=-0.059 Sum_probs=33.6
Q ss_pred CCHHHHHHHHHHhhhcCCCCCCcChhhHHHHHHHHhhCC
Q 027552 86 GSSIEMFDYFYKFLHFWPPNLNVNKYEHMVLLDLLKKGH 124 (222)
Q Consensus 86 ~S~~ea~~yFr~IL~~y~~g~~L~e~D~~vL~eLL~~yH 124 (222)
.|..+++.++...|+-.......+.+|...|+.++..|-
T Consensus 35 Rt~~qcr~Rw~~~l~p~~~~~~Wt~eEd~~L~~~~~~~G 73 (131)
T 3zqc_A 35 RSPKQCRERWFNHLDPAVVKHAWTPEEDETIFRNYLKLG 73 (131)
T ss_dssp SCHHHHHHHHHHHTSTTCCCSCCCHHHHHHHHHHHHHSC
T ss_pred CCHHHHHHHHhhccCccccCCCCCHHHHHHHHHHHHHHC
Confidence 688999999999999887788899998888988887543
No 20
>2cr7_A Paired amphipathic helix protein SIN3B; paired amphipathic helix repeat, transcriptional repressor, structural genomics, NPPSFA; NMR {Mus musculus} PDB: 2rmr_A 2rms_A
Probab=28.63 E-value=14 Score=26.70 Aligned_cols=42 Identities=17% Similarity=0.370 Sum_probs=30.5
Q ss_pred ccCCHHHHHHHHHHhhhcCCCCCCcChhh-HHHHHHHHhhCCCCc
Q 027552 84 EFGSSIEMFDYFYKFLHFWPPNLNVNKYE-HMVLLDLLKKGHPEP 127 (222)
Q Consensus 84 ~F~S~~ea~~yFr~IL~~y~~g~~L~e~D-~~vL~eLL~~yHPd~ 127 (222)
.|.++-+...-|..||+.|..+ .++-.+ ...|..||. .||+.
T Consensus 23 rF~~~p~~Y~~FL~im~~fk~~-~~~~~~v~~rV~~Lf~-~hpdL 65 (80)
T 2cr7_A 23 RFGSDPATYNGFLEIMKEFKSQ-SIDTPGVIRRVSQLFH-EHPDL 65 (80)
T ss_dssp HTSSCHHHHHHHHHHHHHHHTT-SSCHHHHHHHHHHHGG-GCHHH
T ss_pred HHccChHHHHHHHHHHHHHHhc-CCCHHHHHHHHHHHHc-CCHHH
Confidence 4777778888999999998764 344444 466777885 89874
No 21
>2o70_A OHCU decarboxylase; URIC acid, decarboxylation, 5-hydroxyisourate, allantoin, lyase; 1.80A {Danio rerio} SCOP: a.288.1.1 PDB: 2o73_A* 2o74_A*
Probab=28.62 E-value=64 Score=26.28 Aligned_cols=40 Identities=18% Similarity=0.258 Sum_probs=32.1
Q ss_pred CcccCCHHHHHHHHHHhhhcCCCCCCcChhhHHHHHHHHhhCCCCccccc
Q 027552 82 PKEFGSSIEMFDYFYKFLHFWPPNLNVNKYEHMVLLDLLKKGHPEPDKKI 131 (222)
Q Consensus 82 ~k~F~S~~ea~~yFr~IL~~y~~g~~L~e~D~~vL~eLL~~yHPd~e~KI 131 (222)
.+.|.|..++...+..++..+.. ..++++|. .||+...|.
T Consensus 35 ~rPf~s~~~L~~a~~~~~~~~~~---------~~~~~~l~-aHP~lg~~~ 74 (174)
T 2o70_A 35 YRPFKDLADIEARISEFIHSLPD---------SGKEGILR-CHPDLAGRD 74 (174)
T ss_dssp GCSCSSHHHHHHHHHHHHHHSCH---------HHHHHHHH-TSCCTTSHH
T ss_pred cCCCCCHHHHHHHHHHHHHhCCH---------HHHHHHHH-hCCcccccc
Confidence 35699999999999999998652 34778885 999987664
No 22
>4h1k_B Nuclear polyadenylated RNA-binding protein NAB2; heat repeats, nuclear import, protein transport, importin, transportin; 3.04A {Saccharomyces cerevisiae}
Probab=27.22 E-value=42 Score=21.71 Aligned_cols=9 Identities=78% Similarity=1.420 Sum_probs=3.7
Q ss_pred CCCCCCCCC
Q 027552 196 KGRGGGRGG 204 (222)
Q Consensus 196 ~~~~~~~~~ 204 (222)
+.++|||++
T Consensus 12 k~~RGgRgg 20 (38)
T 4h1k_B 12 KNRRGGRGG 20 (38)
T ss_pred ccCcCCccc
Confidence 334444443
No 23
>3o7i_A OHCU decarboxylase; lyase; 1.50A {Klebsiella pneumoniae subsp} PDB: 3o7h_A 3o7j_A* 3o7k_A
Probab=26.59 E-value=87 Score=26.07 Aligned_cols=40 Identities=20% Similarity=0.253 Sum_probs=32.1
Q ss_pred CcccCCHHHHHHHHHHhhhcCCCCCCcChhhHHHHHHHHhhCCCCccccc
Q 027552 82 PKEFGSSIEMFDYFYKFLHFWPPNLNVNKYEHMVLLDLLKKGHPEPDKKI 131 (222)
Q Consensus 82 ~k~F~S~~ea~~yFr~IL~~y~~g~~L~e~D~~vL~eLL~~yHPd~e~KI 131 (222)
.+.|.|..++...+..++..++ ...++++|. -||+...|.
T Consensus 58 ~RPF~s~~~L~~a~~~~~~~~~---------~~~~~~~l~-aHP~Lg~~~ 97 (189)
T 3o7i_A 58 LRPFASRHALLQTAREAMANWG---------EDELNAALS-AHPRIGEKP 97 (189)
T ss_dssp TCCCSCHHHHHHHHHHHHHTCC---------HHHHHHHHT-TCCCTTSSC
T ss_pred cCCCCCHHHHHHHHHHHHHhCC---------HHHHHHHHH-hCCcccccc
Confidence 4679999999999999998753 335788884 999986554
No 24
>3osg_A MYB21; transcription-DNA complex, MYB2, R2R3 domain, DNA binding PR transcription factor; 2.00A {Trichomonas vaginalis} PDB: 3osf_A
Probab=25.65 E-value=84 Score=23.70 Aligned_cols=38 Identities=11% Similarity=0.050 Sum_probs=33.1
Q ss_pred CCHHHHHHHHHHhhhcCCCCCCcChhhHHHHHHHHhhC
Q 027552 86 GSSIEMFDYFYKFLHFWPPNLNVNKYEHMVLLDLLKKG 123 (222)
Q Consensus 86 ~S~~ea~~yFr~IL~~y~~g~~L~e~D~~vL~eLL~~y 123 (222)
.|..+++.++...|+-.......+.+|...|+.++..|
T Consensus 43 Rt~~qcr~Rw~~~l~p~~~~~~WT~eEd~~L~~~v~~~ 80 (126)
T 3osg_A 43 RNARQCRDRWKNYLAPSISHTPWTAEEDALLVQKIQEY 80 (126)
T ss_dssp CCHHHHHHHHHHHTSTTSCCSCCCHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHhhhcccccccccCCHHHHHHHHHHHHHH
Confidence 68899999999999987777889999988899988754
No 25
>3bbo_N Ribosomal protein L15; large ribosomal subunit, spinach chloroplast ribosome, ribonucleoprotein particle, macromolecular complex; 9.40A {Spinacea oleracea}
Probab=25.58 E-value=49 Score=29.12 Aligned_cols=21 Identities=19% Similarity=0.305 Sum_probs=9.8
Q ss_pred HhhhcCCCchhhccccccccC
Q 027552 168 CVDHMLPLPEDMKVKSDANKA 188 (222)
Q Consensus 168 Ci~~~~p~~~~~~~k~~~~~~ 188 (222)
.+.+|-|.+-.-+.+.+..++
T Consensus 66 ~L~~L~p~~Gs~k~kkRvGRG 86 (257)
T 3bbo_N 66 RLDNLGPQPGSRKRPKRKGRG 86 (257)
T ss_dssp CCSSSCCCCCCCSCCCCCSSC
T ss_pred ecccCcCCCCCccCCcCCcCc
Confidence 345555555444444443333
No 26
>2krx_A ASL3597 protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, unknown function; NMR {Nostoc SP}
Probab=24.60 E-value=81 Score=23.94 Aligned_cols=61 Identities=21% Similarity=0.343 Sum_probs=42.0
Q ss_pred CcccCCHHHHHHHHHHhhhcCC-CCCCc--Chh--hHHHHHHHHhhCCCCcccccCCC--ceeEEeeeCCC
Q 027552 82 PKEFGSSIEMFDYFYKFLHFWP-PNLNV--NKY--EHMVLLDLLKKGHPEPDKKIGGG--IQAFQVRYHPT 145 (222)
Q Consensus 82 ~k~F~S~~ea~~yFr~IL~~y~-~g~~L--~e~--D~~vL~eLL~~yHPd~e~KIG~G--I~~i~V~~hp~ 145 (222)
+..|=|..++...++++|..++ +..+. ... -.....-||-.+ ++--||.| |+.+.||..|.
T Consensus 20 ~EqfLT~~Ell~~Lk~~L~~~~~~~LP~dL~~~~s~~~qaq~Lldt~---CELei~pG~~lQWYaVRLEk~ 87 (94)
T 2krx_A 20 PEQFLTTIELLEKLKGELEKISFSDLPLELQKLDSLPAQAQHLIDTS---CELDVGAGKYLQWYAVRLEKL 87 (94)
T ss_dssp CSEEECHHHHHHHHHHHHHHSCTTTSCHHHHHCCCHHHHHHHHHHHC---CCEEEETTEEEEEEECCCCCS
T ss_pred CcccCCHHHHHHHHHHHHHhCccccCCHHHHhCCCHHHHHHHHHHhe---eeeeeCCCCEEEEEEEEEeec
Confidence 4779999999999999999997 44332 111 234455666433 34556666 88999998765
No 27
>1h8a_C AMV V-MYB, MYB transforming protein; transcription/DNA; 2.23A {Avian myeloblastosis virus} SCOP: a.4.1.3 a.4.1.3
Probab=23.94 E-value=1e+02 Score=23.05 Aligned_cols=38 Identities=8% Similarity=-0.040 Sum_probs=32.6
Q ss_pred CCHHHHHHHHHHhhhcCCCCCCcChhhHHHHHHHHhhC
Q 027552 86 GSSIEMFDYFYKFLHFWPPNLNVNKYEHMVLLDLLKKG 123 (222)
Q Consensus 86 ~S~~ea~~yFr~IL~~y~~g~~L~e~D~~vL~eLL~~y 123 (222)
.|..+++.++...|+-.......+.+|...|+.++..|
T Consensus 60 Rt~~qcr~Rw~~~l~p~~~~~~WT~eEd~~L~~~~~~~ 97 (128)
T 1h8a_C 60 RIGKQCRERWHNHLNPEVKKTSWTEEEDRIIYQAHKRL 97 (128)
T ss_dssp CCHHHHHHHHHHTTCSSSCCSCCCHHHHHHHHHHHHHH
T ss_pred CcHHHHHHHHHHhcccccccccCCHHHHHHHHHHHHHH
Confidence 57899999999999987777889999888899888744
No 28
>1f15_A Coat protein; beta barrel, icosahedral virus; 3.20A {Cucumber mosaic virus} SCOP: b.121.4.5
Probab=23.65 E-value=63 Score=27.74 Aligned_cols=32 Identities=22% Similarity=0.459 Sum_probs=24.7
Q ss_pred CceeEEeeeCCC--CCcceeEEEecCCCcccccH
Q 027552 134 GIQAFQVRYHPT--YKSRCFFLIREDETADDFSF 165 (222)
Q Consensus 134 GI~~i~V~~hp~--~~sRCFfVvR~DGt~eDFSY 165 (222)
-|.+|+|+.+|. |.|-||.-+|.=-...|.|.
T Consensus 103 ~vScvQ~RlNPsPkFdStvWVtlRklp~~~~Lss 136 (218)
T 1f15_A 103 LVSRLQIRVNPLPKFDSTVWVTVRKVPASSDLSV 136 (218)
T ss_dssp EEEEEEEEEEECTTCCSCEEEEEEECTTTSCCCS
T ss_pred cceeEEEecCCCcccCcceEEEEeccCCccchhH
Confidence 388999999855 89999999997655555553
No 29
>2czy_A Paired amphipathic helix protein SIN3B; SIN3, PAH1, transcriptional repressor, gene regulation; NMR {Mus musculus}
Probab=23.52 E-value=20 Score=25.65 Aligned_cols=42 Identities=17% Similarity=0.370 Sum_probs=28.8
Q ss_pred ccCCHHHHHHHHHHhhhcCCCCCCcChhh-HHHHHHHHhhCCCCc
Q 027552 84 EFGSSIEMFDYFYKFLHFWPPNLNVNKYE-HMVLLDLLKKGHPEP 127 (222)
Q Consensus 84 ~F~S~~ea~~yFr~IL~~y~~g~~L~e~D-~~vL~eLL~~yHPd~ 127 (222)
.|.++-+...-|..||+.|..+ .++-.+ ...|..||. .||+.
T Consensus 17 ~F~~~p~~Y~~FL~im~~~k~~-~~~~~~v~~rv~~Lf~-~hpdL 59 (77)
T 2czy_A 17 RFGSDPATYNGFLEIMKEFKSQ-SIDTPGVIRRVSQLFH-EHPDL 59 (77)
T ss_dssp HTTTCHHHHHHHHHHHHHHHTT-CSCHHHHHHHHHHHTT-TCHHH
T ss_pred HHccChHHHHHHHHHHHHHHHc-CCCHHHHHHHHHHHHc-CCHHH
Confidence 4666677888888888888764 344443 466777775 88874
No 30
>2hh3_A KH-type splicing regulatory protein; KH-RNA binding domain, RNA binding protein; NMR {Homo sapiens}
Probab=21.36 E-value=11 Score=28.30 Aligned_cols=22 Identities=9% Similarity=0.066 Sum_probs=10.8
Q ss_pred ccHHHHhhhcCCCchhhccccc
Q 027552 163 FSFRKCVDHMLPLPEDMKVKSD 184 (222)
Q Consensus 163 FSY~KCi~~~~p~~~~~~~k~~ 184 (222)
+.-...|+....+..++-....
T Consensus 61 ~G~~e~v~~A~~~I~~ii~~~~ 82 (106)
T 2hh3_A 61 MGPPDRCEHAARIINDLLQSLR 82 (106)
T ss_dssp ESSHHHHHHHHHHHHHHHHHHC
T ss_pred EeCHHHHHHHHHHHHHHHhccc
Confidence 3344555555555555444443
Done!