Query 027552
Match_columns 222
No_of_seqs 132 out of 165
Neff 4.2
Searched_HMMs 13730
Date Mon Mar 25 19:43:31 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/027552.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/027552hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1uzca_ a.159.2.1 (A:) Hypa/FB 45.7 11 0.00079 24.8 3.8 41 83-128 7-48 (69)
2 d2gycj1 c.12.1.1 (J:4-143) Rib 43.6 14 0.00098 27.0 4.5 17 171-187 2-18 (140)
3 d2q37a1 a.288.1.1 (A:6-160) OH 37.3 17 0.0012 27.5 4.2 41 81-131 20-60 (155)
4 d1i3ja_ d.285.1.1 (A:) DNA-bin 33.9 14 0.00098 26.4 2.9 24 72-95 51-74 (96)
5 d2o70a1 a.288.1.1 (A:2-166) OH 29.6 25 0.0018 26.4 4.0 41 81-131 33-73 (165)
6 d2zjri1 c.12.1.1 (I:4-144) Rib 29.1 40 0.0029 24.4 5.1 14 171-184 2-15 (141)
7 d2j01p1 c.12.1.1 (P:5-150) Rib 27.8 26 0.0019 25.6 3.8 17 172-188 2-18 (146)
8 d1r7ma2 d.95.2.1 (A:121-225) D 24.7 52 0.0038 22.7 4.8 57 74-131 36-104 (105)
9 d1f15a_ b.121.4.5 (A:) Cucumov 19.0 40 0.0029 25.7 3.2 31 134-164 42-74 (157)
10 d1usma_ d.74.1.1 (A:) Pterin-4 15.4 50 0.0036 21.8 2.7 62 83-173 16-78 (80)
No 1
>d1uzca_ a.159.2.1 (A:) Hypa/FBP11 {Human (Homo sapiens) [TaxId: 9606]}
Probab=45.66 E-value=11 Score=24.81 Aligned_cols=41 Identities=12% Similarity=0.102 Sum_probs=29.6
Q ss_pred cccCCHHHHHHHHHHhhhcCCCCCCcChh-hHHHHHHHHhhCCCCcc
Q 027552 83 KEFGSSIEMFDYFYKFLHFWPPNLNVNKY-EHMVLLDLLKKGHPEPD 128 (222)
Q Consensus 83 k~F~S~~ea~~yFr~IL~~y~~g~~L~e~-D~~vL~eLL~~yHPd~e 128 (222)
..|+|+.+++..|+.||.... |+.. -...++..|. ..|.+.
T Consensus 7 ~~~~~keeak~~F~~LL~e~~----v~~~~~W~~~~~~~~-~DpRy~ 48 (69)
T d1uzca_ 7 YTWNTKEEAKQAFKELLKEKR----VPSNASWEQAMKMII-NDPRYS 48 (69)
T ss_dssp CCCCSHHHHHHHHHHHHHHTT----CCTTCCHHHHHHHHH-TSGGGG
T ss_pred cccccHHHHHHHHHHHHHHcC----CCCCCCHHHHHHHhc-cCcchh
Confidence 569999999999999999973 4444 2334555664 677764
No 2
>d2gycj1 c.12.1.1 (J:4-143) Ribosomal protein L15 (L15p) {Escherichia coli [TaxId: 562]}
Probab=43.65 E-value=14 Score=26.96 Aligned_cols=17 Identities=12% Similarity=0.169 Sum_probs=8.5
Q ss_pred hcCCCchhhcccccccc
Q 027552 171 HMLPLPEDMKVKSDANK 187 (222)
Q Consensus 171 ~~~p~~~~~~~k~~~~~ 187 (222)
+|-|.|-..+.+.+-.+
T Consensus 2 ~l~~~~gs~k~~kR~gR 18 (140)
T d2gycj1 2 TLSPAEGSKKAGKRLGR 18 (140)
T ss_dssp CSCCSCCSSSCSCCSSS
T ss_pred CCCCCCCCccCcccccC
Confidence 45565555555444333
No 3
>d2q37a1 a.288.1.1 (A:6-160) OHCU decarboxylase, UraD {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}
Probab=37.29 E-value=17 Score=27.51 Aligned_cols=41 Identities=15% Similarity=0.202 Sum_probs=32.0
Q ss_pred CCcccCCHHHHHHHHHHhhhcCCCCCCcChhhHHHHHHHHhhCCCCccccc
Q 027552 81 GPKEFGSSIEMFDYFYKFLHFWPPNLNVNKYEHMVLLDLLKKGHPEPDKKI 131 (222)
Q Consensus 81 G~k~F~S~~ea~~yFr~IL~~y~~g~~L~e~D~~vL~eLL~~yHPd~e~KI 131 (222)
..+.|.|..+|...+..++.. ++..+ ++++|. .||+...|.
T Consensus 20 ~~RPF~s~~~L~~a~~~~~~~------~~~~~---~l~~l~-aHP~Lg~~~ 60 (155)
T d2q37a1 20 TSGPLTSQEAIYTARDIWFNQ------VNVTD---WLEAFS-AHPQIGNTP 60 (155)
T ss_dssp TSCCCCHHHHHHHHHHHHHHT------SCHHH---HHHHHH-TSCCTTSCC
T ss_pred HcCCCCCHHHHHHHHHHHHHh------CCHHH---HHHHHh-cCccccccc
Confidence 457799999999999999987 44444 677884 999976554
No 4
>d1i3ja_ d.285.1.1 (A:) DNA-binding domain of intron endonuclease I-TevI {Bacteriophage T4 [TaxId: 10665]}
Probab=33.87 E-value=14 Score=26.41 Aligned_cols=24 Identities=8% Similarity=0.097 Sum_probs=20.9
Q ss_pred hcCCCceeeCCcccCCHHHHHHHH
Q 027552 72 VNGSGRVKLGPKEFGSSIEMFDYF 95 (222)
Q Consensus 72 ~~~~kPV~LG~k~F~S~~ea~~yF 95 (222)
-..++||.|.+.+|.|..+|-..|
T Consensus 51 n~~~K~v~i~g~~y~S~~EAar~l 74 (96)
T d1i3ja_ 51 PSNIKKISCDGVIFDCAADAARHF 74 (96)
T ss_dssp CTTCCCEEETTEEESSHHHHHHHH
T ss_pred CCCceeEEECCEEEccHHHHHHHh
Confidence 356789999999999999998776
No 5
>d2o70a1 a.288.1.1 (A:2-166) OHCU decarboxylase, UraD {Zebrafish (Brachydanio rerio) [TaxId: 7955]}
Probab=29.58 E-value=25 Score=26.44 Aligned_cols=41 Identities=15% Similarity=0.234 Sum_probs=31.1
Q ss_pred CCcccCCHHHHHHHHHHhhhcCCCCCCcChhhHHHHHHHHhhCCCCccccc
Q 027552 81 GPKEFGSSIEMFDYFYKFLHFWPPNLNVNKYEHMVLLDLLKKGHPEPDKKI 131 (222)
Q Consensus 81 G~k~F~S~~ea~~yFr~IL~~y~~g~~L~e~D~~vL~eLL~~yHPd~e~KI 131 (222)
..+.|+|..++...+..++..+ +.++. +++|. .||+...|.
T Consensus 33 ~~rPF~s~~~L~~a~~~~~~~~------~~~~~---~~~l~-~HP~Lg~~~ 73 (165)
T d2o70a1 33 SYRPFKDLADIEARISEFIHSL------PDSGK---EGILR-CHPDLAGRD 73 (165)
T ss_dssp GGCSCSSHHHHHHHHHHHHHHS------CHHHH---HHHHH-TSCCTTSHH
T ss_pred HcCCCCCHHHHHHHHHHHHHHc------Ccchh---HHHHH-hCchhhhch
Confidence 4467999999999999999984 44443 46774 899986554
No 6
>d2zjri1 c.12.1.1 (I:4-144) Ribosomal protein L15 (L15p) {Deinococcus radiodurans [TaxId: 1299]}
Probab=29.07 E-value=40 Score=24.41 Aligned_cols=14 Identities=21% Similarity=0.377 Sum_probs=6.8
Q ss_pred hcCCCchhhccccc
Q 027552 171 HMLPLPEDMKVKSD 184 (222)
Q Consensus 171 ~~~p~~~~~~~k~~ 184 (222)
||-|.|-+-+.+-+
T Consensus 2 ~L~~~~gs~~~~kR 15 (141)
T d2zjri1 2 DLKPTPGSRKDRKR 15 (141)
T ss_dssp CCCCCSSTTTCCCC
T ss_pred CCCCCCCCccCccc
Confidence 35555555444433
No 7
>d2j01p1 c.12.1.1 (P:5-150) Ribosomal protein L15 (L15p) {Thermus thermophilus [TaxId: 274]}
Probab=27.81 E-value=26 Score=25.62 Aligned_cols=17 Identities=18% Similarity=0.333 Sum_probs=7.2
Q ss_pred cCCCchhhccccccccC
Q 027552 172 MLPLPEDMKVKSDANKA 188 (222)
Q Consensus 172 ~~p~~~~~~~k~~~~~~ 188 (222)
|-|.+-.-+.+.+..++
T Consensus 2 l~~~~gs~k~~kR~GRG 18 (146)
T d2j01p1 2 LRPNPGANKRRKRVGRG 18 (146)
T ss_dssp CSSSCCCSSCCCCCCCC
T ss_pred CCCCCCCCcCcccccCC
Confidence 33444444444443443
No 8
>d1r7ma2 d.95.2.1 (A:121-225) DNA endonuclease I-SceI {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=24.75 E-value=52 Score=22.67 Aligned_cols=57 Identities=14% Similarity=0.169 Sum_probs=39.0
Q ss_pred CCCceeeCCcccCCHHHHHHHHHHhhhcCCCCCC-----------cChhhHHHHHHHHhhC-CCCccccc
Q 027552 74 GSGRVKLGPKEFGSSIEMFDYFYKFLHFWPPNLN-----------VNKYEHMVLLDLLKKG-HPEPDKKI 131 (222)
Q Consensus 74 ~~kPV~LG~k~F~S~~ea~~yFr~IL~~y~~g~~-----------L~e~D~~vL~eLL~~y-HPd~e~KI 131 (222)
....|.|.-..| |..++.-+...+...|-.... |+..+...|.+|+.+| ||+..-|+
T Consensus 36 ~~~~i~l~T~~F-t~~e~~~L~~~L~~kf~l~~~i~~~~~~~~i~i~~~s~~~~~~lI~pyi~psm~YKl 104 (105)
T d1r7ma2 36 TNKSIVLNTQSF-TFEEVEYLVKGLRNKFQLNCYVKINKNKPIIYIDSMSYLIFYNLIKPYLIPQMMYKL 104 (105)
T ss_dssp CCCCEEECCTTS-CHHHHHHHHHHHHHHHCCCEEEEEETTEEEEEECGGGHHHHHHHHTTTCCGGGGGGC
T ss_pred CCCceEEEeCCC-CHHHHHHHHHHHHHHhCceEEEEecCCeEEEEEehhHHHHHHHHhhhcCccccccCC
Confidence 345788999999 777766655555555555443 4555788899999888 77665553
No 9
>d1f15a_ b.121.4.5 (A:) Cucumovirus coat protein {CMV (Cucumber mosaic virus), strain fny [TaxId: 12305]}
Probab=18.99 E-value=40 Score=25.73 Aligned_cols=31 Identities=23% Similarity=0.473 Sum_probs=23.8
Q ss_pred CceeEEeeeCCC--CCcceeEEEecCCCccccc
Q 027552 134 GIQAFQVRYHPT--YKSRCFFLIREDETADDFS 164 (222)
Q Consensus 134 GI~~i~V~~hp~--~~sRCFfVvR~DGt~eDFS 164 (222)
-|.+|+++.||. |.|.||.-+|.=-...|.|
T Consensus 42 kvs~vQ~rlNPsPkFdStvWVtlRklp~~~~Ls 74 (157)
T d1f15a_ 42 LVSRLQIRVNPLPKFDSTVWVTVRKVPASSDLS 74 (157)
T ss_dssp EEEEEEEEEEECTTCCSCEEEEEEECTTTSCCC
T ss_pred heeEEEEecCCCcccCceeEEEEeecCCCccch
Confidence 389999999855 8999999998655444444
No 10
>d1usma_ d.74.1.1 (A:) Pterin-4a-carbinolamine dehydratase (PCD)/dimerization cofactor of HNF1 (DCoH) {Thermus thermophilus [TaxId: 274]}
Probab=15.36 E-value=50 Score=21.80 Aligned_cols=62 Identities=19% Similarity=0.215 Sum_probs=39.7
Q ss_pred cccCCHHHHHHHHHHhhhcCCCCCCcChhhHHHHHHHHhhCCCCcccccCCCceeEEeeeCCCCCcceeEEEecCC-Ccc
Q 027552 83 KEFGSSIEMFDYFYKFLHFWPPNLNVNKYEHMVLLDLLKKGHPEPDKKIGGGIQAFQVRYHPTYKSRCFFLIREDE-TAD 161 (222)
Q Consensus 83 k~F~S~~ea~~yFr~IL~~y~~g~~L~e~D~~vL~eLL~~yHPd~e~KIG~GI~~i~V~~hp~~~sRCFfVvR~DG-t~e 161 (222)
..|++-.+++.++..+. .+-+-+ .|||+. -++.+-..|.+-+|. ..| |.-
T Consensus 16 f~f~~f~~~~~Fv~~va---------------~~ae~~-~HHPdi--~~~~~~V~i~l~Th~-----------~~glT~~ 66 (80)
T d1usma_ 16 FAFPNFREALDFANRVG---------------ALAERE-NHHPRL--TVEWGRVTVEWWTHS-----------AGGVTEK 66 (80)
T ss_dssp EECSSHHHHHHHHHHHH---------------HHHHHH-TCCCEE--EEETTEEEEEECBTT-----------TTBCCHH
T ss_pred EEeCCHHHHHHHHHHHH---------------HHHHHh-cCCCeE--EEEcCeEEEEEEeCC-----------CCCcCHH
Confidence 34666666666655443 234445 599987 455566667777763 333 677
Q ss_pred cccHHHHhhhcC
Q 027552 162 DFSFRKCVDHML 173 (222)
Q Consensus 162 DFSY~KCi~~~~ 173 (222)
||-+.+-|+.++
T Consensus 67 D~~lA~~id~i~ 78 (80)
T d1usma_ 67 DREMARLTDALL 78 (80)
T ss_dssp HHHHHHHHHHTT
T ss_pred HHHHHHHHHHHH
Confidence 888888888775
Done!