Query 027553
Match_columns 222
No_of_seqs 123 out of 415
Neff 4.5
Searched_HMMs 29240
Date Mon Mar 25 19:45:08 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/027553.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/027553hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2l76_A Nfatc2-interacting prot 99.9 2.6E-27 8.9E-32 182.9 9.5 91 130-222 4-94 (95)
2 3kyd_D Small ubiquitin-related 99.9 7.1E-25 2.4E-29 174.2 10.1 77 146-222 37-114 (115)
3 2jxx_A Nfatc2-interacting prot 99.9 2.5E-24 8.4E-29 166.2 9.1 73 146-218 22-96 (97)
4 2io0_B Small ubiquitin-related 99.9 1.9E-23 6.6E-28 158.6 9.9 76 147-222 3-79 (91)
5 1wm3_A Ubiquitin-like protein 99.9 2.8E-23 9.7E-28 150.0 9.1 71 149-219 1-72 (72)
6 3a4r_A Nfatc2-interacting prot 99.9 3.2E-23 1.1E-27 152.7 9.5 75 143-218 2-78 (79)
7 2d07_B Ubiquitin-like protein 99.9 4.8E-23 1.7E-27 156.3 10.0 77 146-222 14-91 (93)
8 2eke_C Ubiquitin-like protein 99.9 4.3E-23 1.5E-27 161.4 9.8 78 144-222 26-104 (106)
9 1wz0_A Ubiquitin-like protein 99.9 9.4E-23 3.2E-27 158.5 9.6 77 146-222 21-98 (104)
10 3tix_A Ubiquitin-like protein 99.9 5.9E-23 2E-27 176.7 8.5 78 145-222 53-130 (207)
11 2io1_B Small ubiquitin-related 99.9 1.2E-22 4.1E-27 154.7 9.2 77 146-222 4-81 (94)
12 2k8h_A Small ubiquitin protein 99.9 9.5E-23 3.2E-27 160.2 7.5 78 145-222 22-100 (110)
13 3pge_A SUMO-modified prolifera 99.9 4E-22 1.4E-26 171.2 10.2 78 145-222 25-102 (200)
14 3v7o_A Minor nucleoprotein VP3 99.8 1.9E-22 6.4E-27 175.5 0.0 76 146-222 18-94 (227)
15 3uf8_A Ubiquitin-like protein 99.8 2.8E-20 9.7E-25 158.8 9.5 77 146-222 18-94 (209)
16 4da1_A Protein phosphatase 1K, 99.8 4.2E-21 1.4E-25 175.2 0.0 77 146-222 27-103 (389)
17 3ix6_A TS, tsase, thymidylate 99.8 1.8E-20 6.1E-25 173.0 0.0 77 146-222 18-94 (360)
18 3goe_A DNA repair protein RAD6 99.8 1.8E-18 6E-23 129.9 9.6 73 147-219 7-81 (82)
19 2uyz_B Small ubiquitin-related 99.5 1.3E-13 4.3E-18 98.8 8.1 75 148-222 2-77 (79)
20 1wyw_B Ubiquitin-like protein 99.4 4.5E-13 1.5E-17 100.9 8.4 77 146-222 18-95 (97)
21 3dbh_I NEDD8; cell cycle, acti 98.9 1E-08 3.4E-13 73.9 9.5 76 146-221 9-85 (88)
22 3n3k_B Ubiquitin; hydrolase, p 98.9 1.1E-08 3.6E-13 73.2 8.4 73 149-221 3-76 (85)
23 3v6c_B Ubiquitin; structural g 98.8 2.2E-08 7.6E-13 73.6 10.2 76 146-221 14-90 (91)
24 3mtn_B UBA80, ubcep1, ubiquiti 98.8 3.1E-08 1.1E-12 70.6 9.4 74 148-221 2-76 (85)
25 3phx_B Ubiquitin-like protein 98.8 4.1E-08 1.4E-12 69.8 9.7 74 148-221 3-77 (79)
26 1ttn_A DC-UBP, dendritic cell- 98.8 2.5E-08 8.6E-13 75.9 9.1 82 140-221 14-96 (106)
27 1wh3_A 59 kDa 2'-5'-oligoadeny 98.8 4.8E-08 1.6E-12 70.5 9.7 76 146-221 4-80 (87)
28 3a9j_A Ubiquitin; protein comp 98.8 4.2E-08 1.4E-12 68.2 9.1 71 151-221 2-73 (76)
29 1ndd_A NEDD8, protein (ubiquit 98.8 4.2E-08 1.4E-12 68.2 8.8 71 151-221 2-73 (76)
30 2bwf_A Ubiquitin-like protein 98.8 7.4E-08 2.5E-12 67.5 10.1 71 150-221 5-76 (77)
31 2dzi_A Ubiquitin-like protein 98.8 5.1E-08 1.8E-12 69.0 9.1 75 146-220 4-79 (81)
32 4hcn_B Polyubiquitin, ubiquiti 98.8 3.4E-08 1.2E-12 73.9 8.5 76 146-221 19-95 (98)
33 3k9o_B Ubiquitin, UBB+1; E2-25 98.7 6.3E-08 2.2E-12 71.2 9.0 72 150-221 2-74 (96)
34 3vdz_A Ubiquitin-40S ribosomal 98.7 1.1E-07 3.7E-12 73.1 10.1 76 146-221 32-108 (111)
35 2faz_A Ubiquitin-like containi 98.7 1.8E-07 6.1E-12 66.2 10.1 74 149-222 2-78 (78)
36 2ojr_A Ubiquitin; lanthide-bin 98.6 2.5E-07 8.5E-12 70.8 10.3 75 147-221 33-108 (111)
37 1wx7_A Ubiquilin 3; ubiquitin- 98.6 2.6E-07 9E-12 69.9 10.2 76 146-221 14-89 (106)
38 4dwf_A HLA-B-associated transc 98.6 3.1E-07 1.1E-11 66.8 9.8 74 147-221 3-77 (90)
39 1yx5_B Ubiquitin; proteasome, 98.6 2.3E-07 7.9E-12 68.9 9.1 71 151-221 2-73 (98)
40 1wx8_A Riken cDNA 4931431F19; 98.6 1.4E-07 4.8E-12 69.7 7.8 76 146-221 14-89 (96)
41 2hj8_A Interferon-induced 17 k 98.6 1.5E-07 5.2E-12 68.9 7.9 73 149-221 4-77 (88)
42 1wy8_A NP95-like ring finger p 98.6 4.9E-07 1.7E-11 65.5 9.6 76 146-221 4-82 (89)
43 1j8c_A Ubiquitin-like protein 98.5 7.2E-07 2.5E-11 70.3 11.2 76 146-221 29-104 (125)
44 1sif_A Ubiquitin; hydrophobic 98.5 2.9E-07 9.9E-12 67.5 8.3 72 150-221 10-82 (88)
45 2klc_A Ubiquilin-1; ubiquitin- 98.5 6.8E-07 2.3E-11 67.5 10.5 75 147-221 23-97 (101)
46 1yqb_A Ubiquilin 3; structural 98.5 5.7E-07 1.9E-11 68.0 9.7 76 146-221 19-94 (100)
47 4fbj_B NEDD8; effector-HOST ta 98.5 4.8E-07 1.6E-11 66.3 8.8 71 151-221 2-73 (88)
48 2wyq_A HHR23A, UV excision rep 98.5 9.6E-07 3.3E-11 63.2 10.0 74 148-221 4-81 (85)
49 2l7r_A Ubiquitin-like protein 98.5 3.8E-07 1.3E-11 67.8 7.2 74 147-221 17-90 (93)
50 3b08_A Polyubiquitin-C, ubiqui 98.5 1.2E-06 4E-11 68.3 10.2 73 149-221 76-149 (152)
51 4eew_A Large proline-rich prot 98.5 1.1E-06 3.9E-11 63.6 9.4 73 146-219 14-87 (88)
52 3m62_B UV excision repair prot 98.4 5.2E-07 1.8E-11 68.7 7.3 72 150-221 2-74 (106)
53 3plu_A Ubiquitin-like modifier 98.4 1.6E-06 5.6E-11 66.3 9.3 74 146-219 18-92 (93)
54 1uel_A HHR23B, UV excision rep 98.4 1.7E-06 5.8E-11 64.2 9.3 71 151-221 2-76 (95)
55 1wia_A Hypothetical ubiquitin- 98.4 1.4E-06 4.9E-11 64.2 8.7 73 146-221 4-78 (95)
56 3m63_B Ubiquitin domain-contai 98.4 3.5E-07 1.2E-11 69.4 4.8 76 146-221 25-100 (101)
57 3u30_A Ubiquitin, linear DI-ub 98.3 4.4E-06 1.5E-10 67.7 10.5 75 146-220 17-92 (172)
58 2kan_A Uncharacterized protein 98.3 4.3E-06 1.5E-10 62.4 9.2 76 146-221 12-88 (94)
59 3rt3_B Ubiquitin-like protein 98.3 5.9E-06 2E-10 65.8 10.1 75 147-221 79-154 (159)
60 2daf_A FLJ35834 protein; hypot 98.3 3.1E-06 1.1E-10 67.4 8.1 76 146-221 12-89 (118)
61 3b1l_X E3 ubiquitin-protein li 97.6 1.3E-07 4.4E-12 66.5 0.0 70 151-220 2-72 (76)
62 2kdi_A Ubiquitin, vacuolar pro 98.2 5.6E-06 1.9E-10 64.0 9.2 74 148-221 8-82 (114)
63 4a20_A Ubiquitin-like protein 98.2 5.6E-06 1.9E-10 63.1 9.0 76 146-221 16-96 (98)
64 2kd0_A LRR repeats and ubiquit 98.2 1.2E-05 4.1E-10 58.7 10.4 73 149-221 12-84 (85)
65 3b08_A Polyubiquitin-C, ubiqui 98.2 5.8E-06 2E-10 64.3 9.0 71 151-221 2-73 (152)
66 2kk8_A Uncharacterized protein 98.2 5.9E-06 2E-10 60.5 8.1 74 147-220 8-83 (84)
67 1we6_A Splicing factor, putati 98.2 1E-05 3.4E-10 61.7 9.3 74 148-221 26-104 (111)
68 1uh6_A Ubiquitin-like 5; beta- 98.2 7.1E-06 2.4E-10 63.3 8.4 74 146-219 25-99 (100)
69 1we7_A SF3A1 protein; structur 98.2 9.8E-06 3.3E-10 62.3 9.0 74 148-221 24-108 (115)
70 3l0w_B Monoubiquitinated proli 98.2 9.1E-06 3.1E-10 66.9 9.4 71 151-221 2-73 (169)
71 1wxv_A BAG-family molecular ch 98.1 1.3E-05 4.3E-10 58.8 8.7 75 146-220 4-84 (92)
72 1wgg_A Ubiquitin carboxyl-term 98.1 1.4E-05 4.9E-10 59.9 8.6 74 146-220 4-78 (96)
73 1x1m_A Ubiquitin-like protein 98.1 1.3E-05 4.3E-10 61.0 7.7 74 148-221 11-100 (107)
74 1v86_A DNA segment, CHR 7, way 98.0 1.1E-05 3.8E-10 60.2 7.1 74 146-220 14-87 (95)
75 1wgd_A Homocysteine-responsive 98.0 1.9E-05 6.6E-10 58.0 7.9 75 147-221 5-86 (93)
76 3q3f_A Ribonuclease/ubiquitin 98.0 1.7E-05 5.9E-10 67.1 8.4 74 148-221 104-178 (189)
77 3u5e_m 60S ribosomal protein L 98.0 8.1E-07 2.8E-11 69.7 0.0 71 151-221 2-73 (128)
78 1v5o_A 1700011N24RIK protein; 98.0 2.3E-05 7.8E-10 59.0 8.0 75 147-221 5-85 (102)
79 1v5t_A 8430435I17RIK protein; 97.9 2.3E-05 7.8E-10 57.7 7.0 74 147-220 5-82 (90)
80 1wju_A NEDD8 ultimate buster-1 97.9 4.1E-05 1.4E-09 59.0 8.3 74 146-219 12-90 (100)
81 3u30_A Ubiquitin, linear DI-ub 97.9 5.7E-05 2E-09 61.1 8.6 73 148-220 95-168 (172)
82 1wf9_A NPL4 family protein; be 97.9 4.5E-05 1.5E-09 58.1 7.5 75 146-220 4-94 (107)
83 3u5c_f 40S ribosomal protein S 97.8 3E-06 1E-10 69.3 0.0 71 151-221 2-73 (152)
84 1v6e_A Cytoskeleton-associated 97.8 0.00014 4.6E-09 54.0 8.8 74 146-219 4-86 (95)
85 4dbg_A Ranbp-type and C3HC4-ty 97.8 0.00017 5.9E-09 56.0 9.7 74 147-220 22-99 (105)
86 3rt3_B Ubiquitin-like protein 97.8 0.00014 4.7E-09 57.7 9.2 71 150-220 3-76 (159)
87 1v2y_A 3300001G02RIK protein; 97.7 3.7E-05 1.3E-09 59.5 5.3 76 145-220 3-95 (105)
88 2lxa_A Ubiquitin-like protein 97.7 4.5E-05 1.5E-09 56.8 5.6 72 150-221 2-78 (87)
89 2kzr_A Ubiquitin thioesterase 97.7 8.1E-05 2.8E-09 54.2 6.4 70 151-220 2-77 (86)
90 2kjr_A CG11242; UBL, ubiquitin 97.7 0.00022 7.7E-09 53.7 8.7 73 146-218 12-93 (95)
91 1t0y_A Tubulin folding cofacto 97.7 0.0003 1E-08 54.8 9.6 73 147-219 4-85 (122)
92 2kj6_A Tubulin folding cofacto 97.6 0.00029 9.8E-09 53.4 8.2 74 146-219 11-94 (97)
93 2fnj_B Transcription elongatio 97.5 0.00032 1.1E-08 55.5 8.2 71 150-220 3-80 (118)
94 1wgh_A Ubiquitin-like 3, HCG-1 97.5 0.00071 2.4E-08 53.1 9.9 74 146-219 13-95 (116)
95 4ajy_B Transcription elongatio 97.5 0.00069 2.3E-08 53.8 9.5 71 150-220 3-80 (118)
96 3ai5_A Yeast enhanced green fl 97.5 0.00044 1.5E-08 62.5 9.4 75 147-221 231-306 (307)
97 2gow_A HCG-1 protein, ubiquiti 97.4 0.00051 1.8E-08 54.5 8.4 73 146-218 14-95 (125)
98 2kdb_A Homocysteine-responsive 97.4 0.00036 1.2E-08 53.0 6.7 72 146-217 20-98 (99)
99 1oqy_A HHR23A, UV excision rep 97.4 0.00031 1.1E-08 64.8 7.2 73 147-219 5-81 (368)
100 1wjn_A Tubulin-folding protein 97.3 0.0014 4.7E-08 48.6 9.0 75 146-220 6-92 (97)
101 2pjh_A Protein NPL4, nuclear p 97.1 0.00047 1.6E-08 50.4 4.3 70 149-218 4-78 (80)
102 4b6w_A Tubulin-specific chaper 97.0 0.0033 1.1E-07 46.4 8.4 72 149-220 2-83 (86)
103 1se9_A Ubiquitin family; ubiqu 97.0 0.0031 1.1E-07 50.4 8.4 68 147-214 14-90 (126)
104 2dzj_A Synaptic glycoprotein S 97.0 0.0026 9.1E-08 46.9 7.3 71 147-217 8-85 (88)
105 3shq_A UBLCP1; phosphatase, hy 96.8 0.0033 1.1E-07 56.6 8.1 74 147-220 3-79 (320)
106 2al3_A TUG long isoform; TUG U 96.1 0.013 4.3E-07 44.6 6.3 70 151-220 11-81 (90)
107 2dzm_A FAS-associated factor 1 96.1 0.013 4.5E-07 44.6 6.4 71 149-219 9-80 (100)
108 2bps_A YUKD protein; ubiquitin 95.8 0.022 7.6E-07 42.2 6.5 71 147-217 2-80 (81)
109 2xzm_9 RPS31E; ribosome, trans 95.0 0.0041 1.4E-07 52.7 0.0 64 152-220 3-67 (189)
110 1ryj_A Unknown; beta/alpha pro 94.3 0.39 1.3E-05 33.5 9.0 61 150-219 5-65 (70)
111 3qx1_A FAS-associated factor 1 92.1 1.4 4.8E-05 31.5 9.2 72 147-219 5-82 (84)
112 2cr5_A Reproduction 8; UBX dom 91.8 0.85 2.9E-05 34.5 8.1 77 141-218 15-96 (109)
113 3jyu_A Ubiquitin carboxyl-term 91.7 1.4 5E-05 37.4 10.4 72 149-220 139-220 (231)
114 4efo_A Serine/threonine-protei 90.1 1.1 3.6E-05 34.0 7.1 51 149-199 12-64 (94)
115 3rpf_C Molybdopterin convertin 89.6 1.1 3.9E-05 31.2 6.6 52 163-219 16-69 (74)
116 2daj_A KIAA0977 protein, COBL- 89.3 1.2 4.1E-05 33.8 6.7 66 146-211 7-76 (91)
117 4a3p_A Ubiquitin carboxyl-term 88.1 2.3 7.7E-05 35.8 8.5 72 149-220 127-208 (217)
118 1oey_A P67-PHOX, neutrophil cy 87.6 1.4 4.8E-05 32.7 6.2 47 148-195 4-50 (83)
119 2kvr_A Ubiquitin carboxyl-term 86.6 1.3 4.4E-05 35.0 5.8 52 146-197 27-94 (130)
120 2dzk_A UBX domain-containing p 86.4 5.9 0.0002 29.9 9.3 75 145-219 9-89 (109)
121 1j0g_A Hypothetical protein 18 86.2 3.2 0.00011 31.3 7.4 75 146-220 7-86 (92)
122 1vd2_A Protein kinase C, IOTA 85.7 3.9 0.00013 30.5 7.8 53 147-199 4-60 (89)
123 2l32_A Small archaeal modifier 82.6 2.5 8.5E-05 30.1 5.3 60 149-219 2-61 (74)
124 1wj4_A KIAA0794 protein; UBX d 81.1 6.8 0.00023 30.4 7.8 72 146-218 40-117 (124)
125 1wj6_A KIAA0049 protein, RSGI 80.0 7.8 0.00027 29.9 7.6 61 140-202 5-70 (101)
126 2bkf_A Zinc-finger protein NBR 75.6 9.8 0.00034 28.5 6.8 51 148-200 5-60 (87)
127 1y8x_B Ubiquitin-activating en 75.1 2.7 9.1E-05 31.9 3.7 58 161-218 7-82 (98)
128 3po0_A Small archaeal modifier 74.5 13 0.00044 26.2 7.1 55 160-219 19-84 (89)
129 2ylm_A Ubiquitin carboxyl-term 73.9 3.2 0.00011 39.5 4.7 36 161-196 38-73 (530)
130 2hj1_A Hypothetical protein; s 72.9 14 0.00048 27.7 7.2 67 148-219 11-84 (97)
131 2ylm_A Ubiquitin carboxyl-term 69.7 3 0.0001 39.6 3.5 74 146-219 127-216 (530)
132 1vjk_A Molybdopterin convertin 69.4 26 0.00088 25.3 7.9 55 160-219 28-93 (98)
133 3w1s_C Ubiquitin-like protein 68.6 14 0.00047 27.6 6.3 60 146-207 5-70 (91)
134 2g1e_A Hypothetical protein TA 67.3 25 0.00084 24.5 7.2 57 162-219 18-85 (90)
135 1ef1_A Moesin; membrane, FERM 66.6 34 0.0012 28.8 9.2 44 150-193 2-46 (294)
136 1f0z_A THis protein; ubiquitin 65.4 8.5 0.00029 26.0 4.2 52 163-219 10-61 (66)
137 1tyg_B YJBS; alpha beta barrel 64.6 9.8 0.00034 27.9 4.7 53 162-219 29-82 (87)
138 2cu3_A Unknown function protei 64.0 11 0.00038 25.3 4.6 48 167-219 12-59 (64)
139 4gdk_A Ubiquitin-like protein 63.3 13 0.00043 27.6 5.1 71 147-218 3-84 (91)
140 1h4r_A Merlin; FERM, neurofibr 62.6 44 0.0015 28.5 9.3 62 146-207 19-85 (314)
141 1wz3_A Autophagy 12B, ATG12B, 62.4 8.8 0.0003 28.8 4.1 60 146-207 10-75 (96)
142 2q5w_D Molybdopterin convertin 62.2 8 0.00027 26.4 3.7 53 161-219 18-72 (77)
143 1fm0_D Molybdopterin convertin 61.2 14 0.00049 25.3 4.9 49 166-219 23-76 (81)
144 2kl0_A Putative thiamin biosyn 60.1 7.1 0.00024 27.5 3.1 48 167-219 13-60 (73)
145 3ge3_C Toluene-4-monooxygenase 58.7 54 0.0018 24.4 7.9 59 161-219 17-82 (84)
146 2kc2_A Talin-1, F1; FERM, adhe 55.7 17 0.00059 28.7 5.0 42 151-192 13-56 (128)
147 1q1o_A Cell division control p 54.3 19 0.00066 27.3 4.9 45 149-193 5-62 (98)
148 3pvl_A Myosin VIIA isoform 1; 52.4 61 0.0021 31.5 9.3 78 110-193 230-309 (655)
149 1rws_A Hypothetical protein PF 52.2 6.4 0.00022 27.6 1.8 48 163-219 25-72 (77)
150 1ip9_A BEM1 protein; ubiquitin 50.2 75 0.0026 23.6 7.4 48 148-196 11-58 (85)
151 2i1j_A Moesin; FERM, coiled-co 50.0 32 0.0011 33.0 6.8 46 148-193 3-49 (575)
152 3dwg_C 9.5 kDa culture filtrat 47.2 38 0.0013 24.0 5.3 52 167-219 24-88 (93)
153 1s3s_G P47 protein; AAA ATPase 45.9 44 0.0015 25.7 5.9 69 148-216 51-124 (127)
154 2k5p_A THis protein, thiamine- 44.5 9.4 0.00032 27.3 1.6 52 163-219 10-64 (78)
155 2inc_C TOUB protein; DIIRON, 4 42.0 1E+02 0.0035 22.8 8.9 60 161-220 15-82 (83)
156 3qij_A Protein 4.1; cytoskelet 41.5 41 0.0014 28.9 5.6 48 146-193 14-63 (296)
157 3qwx_X Cell death abnormality 41.2 36 0.0012 26.7 4.8 70 147-220 46-148 (174)
158 3ivf_A Talin-1; FERM domain, c 39.7 54 0.0018 28.8 6.2 48 146-193 82-131 (371)
159 2l52_A Methanosarcina acetivor 39.1 71 0.0024 23.1 5.8 51 168-219 27-94 (99)
160 3hvz_A Uncharacterized protein 38.8 62 0.0021 23.0 5.3 62 152-221 8-69 (78)
161 2juo_A GA-binding protein alph 35.6 1.1E+02 0.0037 23.0 6.2 57 162-218 6-62 (89)
162 2qjl_A URM1, ubiquitin-related 34.5 1.1E+02 0.0038 21.9 6.2 55 161-219 22-94 (99)
163 2kmm_A Guanosine-3',5'-BIS(dip 32.3 92 0.0032 20.5 5.1 61 152-220 3-63 (73)
164 2w2s_A Matrix protein; viral a 32.3 11 0.00036 31.6 0.3 14 69-82 27-40 (202)
165 3ivf_A Talin-1; FERM domain, c 31.7 2.4E+02 0.008 24.6 9.0 72 149-220 3-84 (371)
166 3qwy_A Cell death abnormality 31.4 1.9E+02 0.0064 24.7 8.2 70 147-220 75-177 (308)
167 1gcq_C VAV proto-oncogene; SH3 30.1 19 0.00064 24.0 1.2 28 193-220 13-40 (70)
168 2eyz_A V-CRK sarcoma virus CT1 30.0 79 0.0027 27.2 5.5 69 148-220 45-164 (304)
169 2r2q_A Gamma-aminobutyric acid 28.7 1.8E+02 0.0063 21.7 6.9 47 161-207 46-93 (110)
170 1wmh_B Partitioning defective- 28.4 1.8E+02 0.0061 21.4 7.0 53 147-199 4-61 (86)
171 3u7z_A Putative metal binding 27.6 99 0.0034 23.3 5.0 69 146-220 5-98 (101)
172 2npt_A Dual specificity mitoge 27.2 2.1E+02 0.0072 21.9 6.9 58 146-218 11-71 (106)
173 3h9d_A ATG8, microtubule-assoc 26.9 57 0.002 25.2 3.7 58 161-218 50-112 (119)
174 3rui_B Autophagy-related prote 26.4 84 0.0029 24.2 4.5 47 161-207 49-96 (118)
175 2zjd_A Microtubule-associated 24.2 1.4E+02 0.0049 23.3 5.6 57 161-218 55-118 (130)
176 3au4_A Myosin-X; protein-prote 23.7 2.1E+02 0.0071 26.5 7.5 48 147-194 214-264 (555)
177 1v8c_A MOAD related protein; r 23.1 1.4E+02 0.0048 23.9 5.5 54 164-219 19-82 (168)
178 2dhz_A RAP guanine nucleotide 23.1 1.2E+02 0.004 23.8 4.8 54 146-199 6-69 (120)
179 1gri_A Growth factor bound pro 22.2 2.9E+02 0.0099 21.8 8.9 68 148-220 93-188 (217)
180 1wgy_A RAP guanine nucleotide 21.0 1.9E+02 0.0064 22.0 5.5 72 146-217 6-83 (104)
181 3m95_A Autophagy related prote 20.7 99 0.0034 24.2 3.9 59 161-219 55-118 (125)
182 2nvu_B Maltose binding protein 20.4 1.9E+02 0.0066 28.0 6.7 58 161-218 714-789 (805)
183 2fpe_A C-JUN-amino-terminal ki 20.3 67 0.0023 20.6 2.5 18 202-219 15-32 (62)
No 1
>2l76_A Nfatc2-interacting protein; ubiquitin-like domain, structural genomics, PSI-biology, Pro structure initiative; NMR {Homo sapiens}
Probab=99.94 E-value=2.6e-27 Score=182.92 Aligned_cols=91 Identities=14% Similarity=0.280 Sum_probs=80.7
Q ss_pred chhhhhhhccCCCCcCCCCcEEEEEEeCCceEEEEEcCCChHHHHHHHHHHHcCCCCCceEEEECCcccCCCCCcccCCC
Q 027553 130 PAALEAESEKVSKPAIERAKIVVSIQDKGGLKQFRVYADDKFERLFKMYADKVNLDQENLVFCFDGDKIGPEATPASLEM 209 (222)
Q Consensus 130 ~~e~~~~~~~~~~p~~~~~kItIkV~~qdg~v~FkIk~tT~L~KLf~aYaer~gl~~~~lrF~FDG~rI~~~~TP~sLgM 209 (222)
.++++++++++. |. .+.+|+|+|++.+++++|+||++|+|+|||++||++.|++++++||+|||.||++++||++|||
T Consensus 4 ~~~~~~~~~~~~-~~-~~~~IniKV~~~g~ev~FkIK~tt~l~KL~~aYc~r~gv~~~sirFlfDG~rI~~~~TP~~L~m 81 (95)
T 2l76_A 4 EDEVVLVEGPTL-PE-TPRLFPLKIRCRADLVRLPLRMSEPLQSVVDHMATHLGVSPSRILLLFGETELSPTATPRTLKL 81 (95)
T ss_dssp CCCCCSSSCCCC-CS-CCCCEEEEEECSSSEEEEEECSSSCTHHHHHHHHHHHTSCGGGEEEEETTEECCTTSCHHHHTC
T ss_pred cccEEEecCCCC-CC-CCCeEEEEEEcCCcEEEEEEecCChHHHHHHHHHhhcCCChhhEEEEECCcCCCCCCCHhHcCC
Confidence 456666666654 43 5788999999776679999999999999999999999999999999999999999999999999
Q ss_pred CCCcEEEEEeccC
Q 027553 210 EDNDIIEVHTKKT 222 (222)
Q Consensus 210 EDGDiIDV~ikQ~ 222 (222)
||||+|||++-.|
T Consensus 82 eD~DiID~~~~~~ 94 (95)
T 2l76_A 82 GVADIIDCVVLTS 94 (95)
T ss_dssp CSSCEEEEEECCC
T ss_pred CCCCEEEEEEecC
Confidence 9999999998654
No 2
>3kyd_D Small ubiquitin-related modifier 1; SUMO, thioester, adenylation, inhibitor, TETR intermediate, ligase, nucleus, phosphoprotein; HET: VMX; 2.61A {Homo sapiens} SCOP: d.15.1.1
Probab=99.92 E-value=7.1e-25 Score=174.18 Aligned_cols=77 Identities=26% Similarity=0.476 Sum_probs=73.1
Q ss_pred CCCcEEEEEEeCCce-EEEEEcCCChHHHHHHHHHHHcCCCCCceEEEECCcccCCCCCcccCCCCCCcEEEEEeccC
Q 027553 146 ERAKIVVSIQDKGGL-KQFRVYADDKFERLFKMYADKVNLDQENLVFCFDGDKIGPEATPASLEMEDNDIIEVHTKKT 222 (222)
Q Consensus 146 ~~~kItIkV~~qdg~-v~FkIk~tT~L~KLf~aYaer~gl~~~~lrF~FDG~rI~~~~TP~sLgMEDGDiIDV~ikQ~ 222 (222)
++.+|+|+|++++|. ++|+|+++|+|.+||++||++.|++++++||+|||++|.+++||++|+|||||+|+|+++|.
T Consensus 37 ~~~~I~LKV~~qdg~ev~fkIk~tt~L~KLm~aY~er~Gl~~~~irFlFDG~rI~~~~TP~dL~MEDgD~IdV~~~Q~ 114 (115)
T 3kyd_D 37 EGEYIKLKVIGQDSSEIHFKVKMTTHLKKLKESYCQRQGVPMNSLRFLFEGQRIADNHTPKELGMEEEDVIEVYQEQC 114 (115)
T ss_dssp --CEEEEEEECTTSCEEEEEEETTSCTHHHHHHHHHHHTCCTTSEEEEETTEECCTTCCTTTTTCCTTCEEEEEECCC
T ss_pred CCCeEEEEEEcCCCCEEEEEEccCChHHHHHHHHHHHhCCChhhEEEEECCeECCCCCCHHHcCCCCCCEEEEEeecc
Confidence 578999999999886 89999999999999999999999999999999999999999999999999999999999985
No 3
>2jxx_A Nfatc2-interacting protein; nuclear factor of activated T-cells, cytoplasmic 2- interacting protein, ubiquitin like homologue; NMR {Homo sapiens}
Probab=99.91 E-value=2.5e-24 Score=166.25 Aligned_cols=73 Identities=29% Similarity=0.497 Sum_probs=70.6
Q ss_pred CCCcEEEEEEeCCc-e-EEEEEcCCChHHHHHHHHHHHcCCCCCceEEEECCcccCCCCCcccCCCCCCcEEEEE
Q 027553 146 ERAKIVVSIQDKGG-L-KQFRVYADDKFERLFKMYADKVNLDQENLVFCFDGDKIGPEATPASLEMEDNDIIEVH 218 (222)
Q Consensus 146 ~~~kItIkV~~qdg-~-v~FkIk~tT~L~KLf~aYaer~gl~~~~lrF~FDG~rI~~~~TP~sLgMEDGDiIDV~ 218 (222)
+..+|+|+|+++++ + ++|+|+++|+|++||++||++.|++++++||+|||++|.+++||++|+|||||+|||+
T Consensus 22 ~~~~I~LkV~~~dg~~~v~fkIk~~t~l~kLm~aY~~~~g~~~~~vrF~FDG~rI~~~~TP~dLdMEDgD~IDv~ 96 (97)
T 2jxx_A 22 TSQQLQLRVQGKEKHQTLEVSLSRDSPLKTLMSHYEEAMGLSGRKLSFFFDGTKLSGRELPADLGMESGDLIEVW 96 (97)
T ss_dssp SCSEEEEEEEESSSSCEEEEEEETTSCHHHHHHHHHHHTTCSSSCCEEEETTEECCSCSCHHHHTCCTTEEEEEE
T ss_pred CCCeEEEEEEcCCCCEEEEEEECCCChHHHHHHHHHHHHCCCcccEEEEECCEEcCCCCCHHHcCCCCCCEEEEe
Confidence 68999999999998 3 8999999999999999999999999999999999999999999999999999999997
No 4
>2io0_B Small ubiquitin-related modifier 2 precursor; SUMO, SENP, ULP, complex, protein binding, hydrolase; 2.30A {Homo sapiens} SCOP: d.15.1.1
Probab=99.89 E-value=1.9e-23 Score=158.60 Aligned_cols=76 Identities=33% Similarity=0.595 Sum_probs=72.7
Q ss_pred CCcEEEEEEeCCce-EEEEEcCCChHHHHHHHHHHHcCCCCCceEEEECCcccCCCCCcccCCCCCCcEEEEEeccC
Q 027553 147 RAKIVVSIQDKGGL-KQFRVYADDKFERLFKMYADKVNLDQENLVFCFDGDKIGPEATPASLEMEDNDIIEVHTKKT 222 (222)
Q Consensus 147 ~~kItIkV~~qdg~-v~FkIk~tT~L~KLf~aYaer~gl~~~~lrF~FDG~rI~~~~TP~sLgMEDGDiIDV~ikQ~ 222 (222)
+++|+|+|++++|. ++|+|+++|+|++||++||++.|++++++||+|||++|.+++||++|+|||||+|+|+++|+
T Consensus 3 ~~~i~ikVk~~~g~~v~~~vk~~t~l~kl~~~y~~~~gi~~~~~rf~FdG~~l~~~~Tp~dl~medgD~Idv~~~q~ 79 (91)
T 2io0_B 3 NDHINLKVAGQDGSVVQFKIKRHTPLSKLMKAYCERQGLSMRQIRFRFDGQPINETDTPAQLEMEDEDTIDVFQQQT 79 (91)
T ss_dssp -CEEEEEEECTTSCEEEEEEETTSCTHHHHHHHHHHTTCCSTTEEEEETTEECCTTCCTTTTTCCTTEEEEEEECCC
T ss_pred CCeEEEEEECCCCCEEEEEECCCChHHHHHHHHHHHhCCCcccEEEEECCEEcCCCCCHHHcCCCCCCEEEEEEecc
Confidence 57899999998886 89999999999999999999999999999999999999999999999999999999999885
No 5
>1wm3_A Ubiquitin-like protein SMT3B; ubiquitin fold, half-open barrel, two helices, protein transport; 1.20A {Homo sapiens} SCOP: d.15.1.1 PDB: 1wm2_A 3uin_B 3uio_B 2ckh_B
Probab=99.89 E-value=2.8e-23 Score=149.99 Aligned_cols=71 Identities=34% Similarity=0.611 Sum_probs=68.6
Q ss_pred cEEEEEEeCCce-EEEEEcCCChHHHHHHHHHHHcCCCCCceEEEECCcccCCCCCcccCCCCCCcEEEEEe
Q 027553 149 KIVVSIQDKGGL-KQFRVYADDKFERLFKMYADKVNLDQENLVFCFDGDKIGPEATPASLEMEDNDIIEVHT 219 (222)
Q Consensus 149 kItIkV~~qdg~-v~FkIk~tT~L~KLf~aYaer~gl~~~~lrF~FDG~rI~~~~TP~sLgMEDGDiIDV~i 219 (222)
+|+|+|++++|. ++|+|+++++|++||++||++.|++++++||+|||++|.+++||++|+|||||+|+|++
T Consensus 1 ~i~lkV~~~~g~~v~~~v~~~t~l~kl~~~y~~~~gi~~~~~rf~fdG~~l~~~~Tp~~l~medgD~Idv~~ 72 (72)
T 1wm3_A 1 HINLKVAGQDGSVVQFKIKRHTPLSKLMKAYCERQGLSMRQIRFRFDGQPINETDTPAQLEMEDEDTIDVFQ 72 (72)
T ss_dssp CEEEEEECTTSCEEEEEECTTSCTHHHHHHHHHHHTCCTTTCEEEETTEECCTTCCTTTTTCCTTEEEEEEC
T ss_pred CEEEEEECCCCCEEEEEECCCChHHHHHHHHHHHhCCCcceEEEEECCEEcCCCCCHHHcCCCCCCEEEEEC
Confidence 589999998886 89999999999999999999999999999999999999999999999999999999985
No 6
>3a4r_A Nfatc2-interacting protein; ubiquitin fold, coiled coil, cytoplasm, methylation, nucleus, transcription; 1.00A {Mus musculus} PDB: 3a4s_C 3rd2_A
Probab=99.89 E-value=3.2e-23 Score=152.67 Aligned_cols=75 Identities=28% Similarity=0.522 Sum_probs=71.6
Q ss_pred CcCCCCcEEEEEEeCCc--eEEEEEcCCChHHHHHHHHHHHcCCCCCceEEEECCcccCCCCCcccCCCCCCcEEEEE
Q 027553 143 PAIERAKIVVSIQDKGG--LKQFRVYADDKFERLFKMYADKVNLDQENLVFCFDGDKIGPEATPASLEMEDNDIIEVH 218 (222)
Q Consensus 143 p~~~~~kItIkV~~qdg--~v~FkIk~tT~L~KLf~aYaer~gl~~~~lrF~FDG~rI~~~~TP~sLgMEDGDiIDV~ 218 (222)
|. ++.+|+|+|++++| .++|+|+++|+|++||++||++.|++++++||+|||++|.+++||++|+|+|||+|+|+
T Consensus 2 p~-~~~~i~ikV~~~~g~~~i~~~i~~~t~l~kl~~~y~~~~gi~~~~~rf~fdG~~l~~~~Tp~~l~medgD~Idv~ 78 (79)
T 3a4r_A 2 PL-GSQELRLRVQGKEKHQMLEISLSPDSPLKVLMSHYEEAMGLSGHKLSFFFDGTKLSGKELPADLGLESGDLIEVW 78 (79)
T ss_dssp TT-CCCCEEEEEECSSTTCEEEEEECTTSCHHHHHHHHHHHHTCTTCCCEEEETTEECCSCCCHHHHTCCTTCEEEEE
T ss_pred CC-CCCEEEEEEEeCCCCEEEEEEECCCChHHHHHHHHHHHhCCCcccEEEEECCEEcCCCCCHHHcCCCCCCEEEEe
Confidence 44 78999999999888 38999999999999999999999999999999999999999999999999999999997
No 7
>2d07_B Ubiquitin-like protein SMT3B; hydrolase; 2.10A {Homo sapiens} SCOP: d.15.1.1 PDB: 2rpq_A 2awt_A 2io3_B 2iyd_B 1u4a_A 2k1f_A
Probab=99.89 E-value=4.8e-23 Score=156.31 Aligned_cols=77 Identities=32% Similarity=0.591 Sum_probs=73.0
Q ss_pred CCCcEEEEEEeCCce-EEEEEcCCChHHHHHHHHHHHcCCCCCceEEEECCcccCCCCCcccCCCCCCcEEEEEeccC
Q 027553 146 ERAKIVVSIQDKGGL-KQFRVYADDKFERLFKMYADKVNLDQENLVFCFDGDKIGPEATPASLEMEDNDIIEVHTKKT 222 (222)
Q Consensus 146 ~~~kItIkV~~qdg~-v~FkIk~tT~L~KLf~aYaer~gl~~~~lrF~FDG~rI~~~~TP~sLgMEDGDiIDV~ikQ~ 222 (222)
.+.+|+|+|++++|. ++|+|+++++|++||++||++.|++++++||+|||++|.+++||++|+|+|||+|+|+++|+
T Consensus 14 ~~~~i~ikV~~~~g~~i~~~v~~~t~l~kl~~~y~~~~gi~~~~~rf~fdG~~l~~~~Tp~dl~medgD~Idv~~~q~ 91 (93)
T 2d07_B 14 NNDHINLKVAGQDGSVVQFKIKRHTPLSKLMKAYCERQGLSMRQIRFRFDGQPINETDTPAQLEMEDEDTIDVFQQQT 91 (93)
T ss_dssp -CCEEEEEEECTTSCEEEEEEETTSCHHHHHHHHHHHHTCCGGGEEEEETTEECCTTCCTTTTTCCTTEEEEEEECC-
T ss_pred CCCeEEEEEECCCCCEEEEEEccCCHHHHHHHHHHHHhCCCccceEEEECCEEcCCCCCHHHcCCCCCCEEEEEeecc
Confidence 578999999998886 89999999999999999999999999999999999999999999999999999999999884
No 8
>2eke_C Ubiquitin-like protein SMT3; UBC9, SUMO binding motif, SBM, ligase/protein binding complex; 1.90A {Saccharomyces cerevisiae} SCOP: d.15.1.1
Probab=99.89 E-value=4.3e-23 Score=161.37 Aligned_cols=78 Identities=31% Similarity=0.570 Sum_probs=73.4
Q ss_pred cCCCCcEEEEEEeCCce-EEEEEcCCChHHHHHHHHHHHcCCCCCceEEEECCcccCCCCCcccCCCCCCcEEEEEeccC
Q 027553 144 AIERAKIVVSIQDKGGL-KQFRVYADDKFERLFKMYADKVNLDQENLVFCFDGDKIGPEATPASLEMEDNDIIEVHTKKT 222 (222)
Q Consensus 144 ~~~~~kItIkV~~qdg~-v~FkIk~tT~L~KLf~aYaer~gl~~~~lrF~FDG~rI~~~~TP~sLgMEDGDiIDV~ikQ~ 222 (222)
..++.+|+|+|++ +|. ++|+|+++|+|++||++||++.|++++++||+|||++|.+++||++|+|+|||+|+|+++|+
T Consensus 26 ~~~~~~I~IkV~~-~g~~i~fkIk~tt~l~kL~~ay~ek~gi~~~~~rF~FdG~rl~~~~Tp~dl~medgD~Idv~~~q~ 104 (106)
T 2eke_C 26 VKPETHINLKVSD-GSSEIFFKIKKTTPLRRLMEAFAKRQGKEMDSLRFLYDGIRIQADQTPEDLDMEDNDIIEAHREQI 104 (106)
T ss_dssp CCCCSEEEEEEEC-SSCEEEEEEETTSCTHHHHHHHHHHHTCCGGGEEEEETTEECCTTCCTTTTTCCTTEEEEEEECC-
T ss_pred CCCCCeEEEEEec-CCcEEEEEeCCCCHHHHHHHHHHHHhCCCcccEEEEECCeEcCCCCCHHHcCCCCCCEEEEEeecc
Confidence 3468899999999 775 89999999999999999999999999999999999999999999999999999999999985
No 9
>1wz0_A Ubiquitin-like protein SMT3B; SUMO-2, ubiquitin-like molecule, structural genomics, sentrin2, NPPFSA; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=99.88 E-value=9.4e-23 Score=158.47 Aligned_cols=77 Identities=32% Similarity=0.591 Sum_probs=74.1
Q ss_pred CCCcEEEEEEeCCce-EEEEEcCCChHHHHHHHHHHHcCCCCCceEEEECCcccCCCCCcccCCCCCCcEEEEEeccC
Q 027553 146 ERAKIVVSIQDKGGL-KQFRVYADDKFERLFKMYADKVNLDQENLVFCFDGDKIGPEATPASLEMEDNDIIEVHTKKT 222 (222)
Q Consensus 146 ~~~kItIkV~~qdg~-v~FkIk~tT~L~KLf~aYaer~gl~~~~lrF~FDG~rI~~~~TP~sLgMEDGDiIDV~ikQ~ 222 (222)
.+.+|+|+|++++|. ++|+|+++|+|.+||++||++.|++++++||+|||++|.+++||++|+|+|||+|+|+++|+
T Consensus 21 ~~~~I~IkVk~~~g~~i~~kVk~~t~l~kL~~~y~ek~gi~~~~~rf~FdG~~l~~~~Tp~dl~medgD~Idv~~~q~ 98 (104)
T 1wz0_A 21 NNDHINLKVAGQDGSVVQFKIKRHTPLSKLMKAYCERQGLSMRQIRFRFDGQPINETDTPAQLEMEDEDTIDVFQQQT 98 (104)
T ss_dssp CSCCEEEEEECSSSCEEEEEECTTSCHHHHHHHHHHHHTCCTTTSCEESSSSBCCTTSCTTTTTCCTTEEEEECCCCC
T ss_pred CCCeEEEEEECCCCCEEEEEEcCCChHHHHHHHHHHHhCCCcceEEEEECCEEcCCCCCHHHcCCCCCCEEEEEEecc
Confidence 578999999998886 89999999999999999999999999999999999999999999999999999999999885
No 10
>3tix_A Ubiquitin-like protein SMT3, RNA-induced transcri silencing complex protein TAS3; PIN, rossmann fold, SPOC, alpha-helical hairpin, heterochrom silencing, RITS, RNAI, argonaute; 2.90A {Saccharomyces cerevisiae}
Probab=99.88 E-value=5.9e-23 Score=176.65 Aligned_cols=78 Identities=29% Similarity=0.538 Sum_probs=72.1
Q ss_pred CCCCcEEEEEEeCCceEEEEEcCCChHHHHHHHHHHHcCCCCCceEEEECCcccCCCCCcccCCCCCCcEEEEEeccC
Q 027553 145 IERAKIVVSIQDKGGLKQFRVYADDKFERLFKMYADKVNLDQENLVFCFDGDKIGPEATPASLEMEDNDIIEVHTKKT 222 (222)
Q Consensus 145 ~~~~kItIkV~~qdg~v~FkIk~tT~L~KLf~aYaer~gl~~~~lrF~FDG~rI~~~~TP~sLgMEDGDiIDV~ikQ~ 222 (222)
..+.+|+|+|+..+..++|+|+++|+|+|||++||++.|++++++||+|||++|.+++||++|+|||||+|+|+++|+
T Consensus 53 dp~e~InLKVk~dG~eV~FKIKrtTpL~KLmeAYcERqGL~~~sIRFLFDGqRI~~ddTPeDLdMEDGDtIDV~leQ~ 130 (207)
T 3tix_A 53 KPETHINLKVSDGSSEIFFKIKKTTPLRRLMEAFAKRQGKEMDSLTFLYDGIEIQADQTPEDLDMEDNDIIEAHREQI 130 (207)
T ss_dssp --CCEEEEEEECSSCEEEEEEETTSCTHHHHHHHHHHTTCCGGGSCEEETTEECCSSCCTTTTTCCTTEEEEECCCCC
T ss_pred CCCCcEEEEEecCCCEEEEEEccCChHHHHHHHHHHHhCCCcccEEEEECCeecCCCCCHHHcCCCCCCEEEEEEecc
Confidence 358999999986444599999999999999999999999999999999999999999999999999999999999985
No 11
>2io1_B Small ubiquitin-related modifier 3 precursor; SUMO, SENP, ULP, complex, protein binding, hydrolase; 2.60A {Homo sapiens} SCOP: d.15.1.1
Probab=99.88 E-value=1.2e-22 Score=154.72 Aligned_cols=77 Identities=32% Similarity=0.579 Sum_probs=72.6
Q ss_pred CCCcEEEEEEeCCce-EEEEEcCCChHHHHHHHHHHHcCCCCCceEEEECCcccCCCCCcccCCCCCCcEEEEEeccC
Q 027553 146 ERAKIVVSIQDKGGL-KQFRVYADDKFERLFKMYADKVNLDQENLVFCFDGDKIGPEATPASLEMEDNDIIEVHTKKT 222 (222)
Q Consensus 146 ~~~kItIkV~~qdg~-v~FkIk~tT~L~KLf~aYaer~gl~~~~lrF~FDG~rI~~~~TP~sLgMEDGDiIDV~ikQ~ 222 (222)
.+.+|+|+|++++|. ++|+|+++++|++||++||++.|++++++||+|||++|.+++||++|+|||||+|+|+++|+
T Consensus 4 ~~~~i~ikVk~~~g~~i~~~v~~~t~l~kl~~~y~~~~gi~~~~~rf~FdG~~l~~~~Tp~dl~medgD~Idv~~~~~ 81 (94)
T 2io1_B 4 MNDHINLKVAGQDGSVVQFKIKRHTPLSKLMKAYCERQGLSMRQIRFRFDGQPINETDTPAQLEMEDEDTIDVFQQQT 81 (94)
T ss_dssp --CEEEEEEECTTSCEEEEEEETTSCTHHHHHHHHHHHTCCGGGEEEEETTEECCTTCCTTTTTCCTTCEEEEEECCE
T ss_pred CCCeEEEEEECCCCCEEEEEECCCCHHHHHHHHHHHHhCCCcccEEEEECCEEcCCCCCHHHcCCCCCCEEEEEEecc
Confidence 578999999998886 89999999999999999999999999999999999999999999999999999999999874
No 12
>2k8h_A Small ubiquitin protein; SUMO, post-translational modifier, signaling protein; NMR {Trypanosoma brucei}
Probab=99.87 E-value=9.5e-23 Score=160.23 Aligned_cols=78 Identities=29% Similarity=0.543 Sum_probs=74.8
Q ss_pred CCCCcEEEEEEeCCce-EEEEEcCCChHHHHHHHHHHHcCCCCCceEEEECCcccCCCCCcccCCCCCCcEEEEEeccC
Q 027553 145 IERAKIVVSIQDKGGL-KQFRVYADDKFERLFKMYADKVNLDQENLVFCFDGDKIGPEATPASLEMEDNDIIEVHTKKT 222 (222)
Q Consensus 145 ~~~~kItIkV~~qdg~-v~FkIk~tT~L~KLf~aYaer~gl~~~~lrF~FDG~rI~~~~TP~sLgMEDGDiIDV~ikQ~ 222 (222)
.++.+|+|+|++++|. ++|+|+++|+|++||++||++.|+++.++||+|||++|.+++||++|+|+|||+|+|++.|+
T Consensus 22 ~~~~~I~IkVk~~~g~~i~fkVk~~t~l~kL~~ay~ek~gi~~~~~rfiFdG~~L~~~~Tp~dl~mEDgD~Idv~~~q~ 100 (110)
T 2k8h_A 22 EETALVAVKVVNADGAEMFFRIKSRTALKKLIDTYCKKQGISRNSVRFLFDGTPIDETKTPEELGMEDDDVIDAMVEQT 100 (110)
T ss_dssp CCCCCEEEEEEETTSCCEEEEECTTSSHHHHHHHHHHHHTCCSSSCEEESSSCBCCSSSHHHHHHCSSEEEEEEECCCC
T ss_pred CCCCeEEEEEECCCCCEEEEEECCCChHHHHHHHHHHHhCCCcccEEEEECCEEcCCCCCHHHcCCCCCCEEEEEEccc
Confidence 3678999999999886 99999999999999999999999999999999999999999999999999999999999885
No 13
>3pge_A SUMO-modified proliferating cell nuclear antigen; DNA replication, DNA binding protein; 2.80A {Saccharomyces cerevisiae}
Probab=99.87 E-value=4e-22 Score=171.23 Aligned_cols=78 Identities=29% Similarity=0.536 Sum_probs=72.9
Q ss_pred CCCCcEEEEEEeCCceEEEEEcCCChHHHHHHHHHHHcCCCCCceEEEECCcccCCCCCcccCCCCCCcEEEEEeccC
Q 027553 145 IERAKIVVSIQDKGGLKQFRVYADDKFERLFKMYADKVNLDQENLVFCFDGDKIGPEATPASLEMEDNDIIEVHTKKT 222 (222)
Q Consensus 145 ~~~~kItIkV~~qdg~v~FkIk~tT~L~KLf~aYaer~gl~~~~lrF~FDG~rI~~~~TP~sLgMEDGDiIDV~ikQ~ 222 (222)
..+.+|+|+|+..+..++|+|+++|+|++||++||++.|++++++||+|||++|.+++||++|+|+|||+|+|+++|.
T Consensus 25 ~~~~~I~LkV~~~g~~v~fkIk~~t~l~kL~~ay~er~Gi~~~~~RF~FdG~rI~~~~TP~dL~MEdgD~Idv~~~q~ 102 (200)
T 3pge_A 25 KPETHINLKVSDGSSEIFFKIKKTTPLRRLMEAFAKRQGKEMDSLRFLYDGIRIQADQTPEDLDMEDNDIIEAHREQI 102 (200)
T ss_dssp CCCCCEEEEEECSSCEEEEEECTTSCTHHHHHHHHHHHSSCGGGEEEEETTEECCTTCCTTTTTCCTTEEEEEEECCS
T ss_pred CCCCeEEEEEecCCCEEEEEEecCCHHHHHHHHHHHHhCCChhhEEEEECCEEcCCCCCHHHcCCCCCCEEEEEeccC
Confidence 368999999986444589999999999999999999999999999999999999999999999999999999999984
No 14
>3v7o_A Minor nucleoprotein VP30; ssgcid, seattle structural genomics center for infectious disease, SMT, transcription; 2.25A {Reston ebolavirus}
Probab=99.83 E-value=1.9e-22 Score=175.52 Aligned_cols=76 Identities=30% Similarity=0.577 Sum_probs=0.0
Q ss_pred CCCcEEEEEEeCCce-EEEEEcCCChHHHHHHHHHHHcCCCCCceEEEECCcccCCCCCcccCCCCCCcEEEEEeccC
Q 027553 146 ERAKIVVSIQDKGGL-KQFRVYADDKFERLFKMYADKVNLDQENLVFCFDGDKIGPEATPASLEMEDNDIIEVHTKKT 222 (222)
Q Consensus 146 ~~~kItIkV~~qdg~-v~FkIk~tT~L~KLf~aYaer~gl~~~~lrF~FDG~rI~~~~TP~sLgMEDGDiIDV~ikQ~ 222 (222)
++.+|+|+| +++|. ++|+|+++|+|+|||++||++.|++++++||+|||++|++++||++|+|||||+|+|+++|+
T Consensus 18 p~e~InLKV-~qdGseV~FKIKrtTpL~KLM~AYcERqGLs~~siRFLFDGqRI~dddTPadL~MEDGDtIDV~leQ~ 94 (227)
T 3v7o_A 18 PETHINLKV-SDGSSEIFFKIKKTTPLRRLMEAFAKRQGKEMDSLRFLYDGIRIQADQTPEDLDMEDNDIIEAHREQI 94 (227)
T ss_dssp ------------------------------------------------------------------------------
T ss_pred CCCeEEEEE-eCCCCEEEEEEccCChHHHHHHHHHHHhCCCccceEEEECCEecCCCCCHHHcCCCCCCEEEEEeccc
Confidence 578999999 67765 89999999999999999999999999999999999999999999999999999999999884
No 15
>3uf8_A Ubiquitin-like protein SMT3, peptidyl-prolyl CIS- isomerase; ssgcid, seattle structural genomics center for in disease; HET: FK5; 1.50A {Burkholderia pseudomallei} PDB: 4ggq_C* 3vaw_A* 3uqa_A* 4g50_A* 4fn2_A* 3uqb_A* 4giv_A* 1euv_B 3v60_A 3v61_A 3v62_A*
Probab=99.82 E-value=2.8e-20 Score=158.84 Aligned_cols=77 Identities=30% Similarity=0.552 Sum_probs=73.5
Q ss_pred CCCcEEEEEEeCCceEEEEEcCCChHHHHHHHHHHHcCCCCCceEEEECCcccCCCCCcccCCCCCCcEEEEEeccC
Q 027553 146 ERAKIVVSIQDKGGLKQFRVYADDKFERLFKMYADKVNLDQENLVFCFDGDKIGPEATPASLEMEDNDIIEVHTKKT 222 (222)
Q Consensus 146 ~~~kItIkV~~qdg~v~FkIk~tT~L~KLf~aYaer~gl~~~~lrF~FDG~rI~~~~TP~sLgMEDGDiIDV~ikQ~ 222 (222)
.+++|+|+|++.++.++|+|+++|+|+|||++||++.|++++++||+|||++|++++||.+|+|+|||+|+|+.+|.
T Consensus 18 ~~~~i~ikv~~~~~~v~~~i~~~~~l~kl~~~y~~~~g~~~~~~~f~fdG~~i~~~~Tpk~L~~ed~d~I~~~~eq~ 94 (209)
T 3uf8_A 18 PETHINLKVSDGSSEIFFKIKKTTPLRRLMEAFAKRQGKEMDSLRFLYDGIRIQADQTPEDLDMEDNDIIEAHREQI 94 (209)
T ss_dssp CCSEEEEEEECSSCEEEEEEETTSCTHHHHHHHHHHHTCCGGGCEEEETTEECCTTCCTTTTTCCTTEEEEEECSCT
T ss_pred CCCcEEEEEEcCCCEEEEEEeeCCHHHHHHHHHHHhhCCChheEEEEECCEeccCCCChHHhhhcccccchhhcccc
Confidence 68999999998555689999999999999999999999999999999999999999999999999999999999984
No 16
>4da1_A Protein phosphatase 1K, mitochondrial; metal-ION-assisted catalysis, dehydrogenase phosphatase, hydrolase; 2.38A {Homo sapiens} PDB: 3qht_A 1l2n_A
Probab=99.79 E-value=4.2e-21 Score=175.21 Aligned_cols=77 Identities=29% Similarity=0.544 Sum_probs=0.0
Q ss_pred CCCcEEEEEEeCCceEEEEEcCCChHHHHHHHHHHHcCCCCCceEEEECCcccCCCCCcccCCCCCCcEEEEEeccC
Q 027553 146 ERAKIVVSIQDKGGLKQFRVYADDKFERLFKMYADKVNLDQENLVFCFDGDKIGPEATPASLEMEDNDIIEVHTKKT 222 (222)
Q Consensus 146 ~~~kItIkV~~qdg~v~FkIk~tT~L~KLf~aYaer~gl~~~~lrF~FDG~rI~~~~TP~sLgMEDGDiIDV~ikQ~ 222 (222)
...+|+|+|++.+..++|+|+++|+|+|||++||+++|++++++||+|+|++|++++||++|+|||||+|+|+++|+
T Consensus 27 ~~~~i~lkv~~~~~~~~~~i~~~~~~~~l~~~y~~~~g~~~~~~~f~f~G~~i~~~~Tp~~l~med~d~i~~~~~q~ 103 (389)
T 4da1_A 27 PETHINLKVSDGSSEIFFKIKKTTPLRRLMEAFAKRQGKEMDSLRFLYDGIRIQADQAPEDLDMEDNDIIEAHREQI 103 (389)
T ss_dssp -----------------------------------------------------------------------------
T ss_pred CCCcEEEEEecCCcEEEEEECCCChHHHHHHHHHHHhCCCcceEEEEECCEEcCCCCCHHHcCCCCCCEeeeeeccc
Confidence 67899999998555689999999999999999999999999999999999999999999999999999999999985
No 17
>3ix6_A TS, tsase, thymidylate synthase; niaid, ssgcid, seattle structural center for infectious DISE brucellosis, orchitis, epididymitis, mastitis; 2.20A {Brucella melitensis}
Probab=99.77 E-value=1.8e-20 Score=173.00 Aligned_cols=77 Identities=30% Similarity=0.552 Sum_probs=0.0
Q ss_pred CCCcEEEEEEeCCceEEEEEcCCChHHHHHHHHHHHcCCCCCceEEEECCcccCCCCCcccCCCCCCcEEEEEeccC
Q 027553 146 ERAKIVVSIQDKGGLKQFRVYADDKFERLFKMYADKVNLDQENLVFCFDGDKIGPEATPASLEMEDNDIIEVHTKKT 222 (222)
Q Consensus 146 ~~~kItIkV~~qdg~v~FkIk~tT~L~KLf~aYaer~gl~~~~lrF~FDG~rI~~~~TP~sLgMEDGDiIDV~ikQ~ 222 (222)
++++|+|+|++++..++|+|+++|+|+|||++||++.|++++++||+|||++|.+++||++|+|||||+|+|+++|+
T Consensus 18 ~~~~I~LKV~~~g~~v~FkIk~~t~l~kLm~aY~~r~G~~~~~~rFlFdG~rI~~~~TP~~L~MEDgD~Idv~~~Q~ 94 (360)
T 3ix6_A 18 PETHINLKVSDGSSEIFFKIKKTTPLRRLMEAFAKRQGKEMDSLRFLYDGIRIQADQTPEDLDMEDNDIIEAHREQI 94 (360)
T ss_dssp -----------------------------------------------------------------------------
T ss_pred CCCeEEEEEecCCcEEEEEEecCChHHHHHHHHHHHhCCCcceEEEEECCeECCCCCChHHcCCCccchhhhhhccC
Confidence 56899999998655689999999999999999999999999999999999999999999999999999999999984
No 18
>3goe_A DNA repair protein RAD60; SUMO-like domain, sumoylation, SUMO, genome stability, DNA damage, DNA recombination, nucleus; HET: DNA; 0.97A {Schizosaccharomyces pombe} PDB: 3rcz_A*
Probab=99.76 E-value=1.8e-18 Score=129.90 Aligned_cols=73 Identities=21% Similarity=0.342 Sum_probs=68.1
Q ss_pred CCcEEEEEEeCCce-EEEEEcCCChHHHHHHHHHHHcCCCCC-ceEEEECCcccCCCCCcccCCCCCCcEEEEEe
Q 027553 147 RAKIVVSIQDKGGL-KQFRVYADDKFERLFKMYADKVNLDQE-NLVFCFDGDKIGPEATPASLEMEDNDIIEVHT 219 (222)
Q Consensus 147 ~~kItIkV~~qdg~-v~FkIk~tT~L~KLf~aYaer~gl~~~-~lrF~FDG~rI~~~~TP~sLgMEDGDiIDV~i 219 (222)
...|++-+++.... +.|+|++++++.+||++||.+.|++++ .+||.|||.||.+++||.+|+|+|||.|+|++
T Consensus 7 ~~~~~~~~~~~~~~dl~f~I~~~t~v~kLi~ayc~~~~I~~~~~IrllFDGdRLdp~~tp~DlemeD~D~IDvmL 81 (82)
T 3goe_A 7 HKLITLLLRSSKSEDLRLSIPVDFTVKDLIKRYCTEVKISFHERIRLEFEGEWLDPNDQVQSTELEDEDQVSVVL 81 (82)
T ss_dssp CCEEEEEEEESSSCCEEEEEETTSBHHHHHHHHHHHHTCCCCTTCEEEETTEECCTTSBGGGSSCCTTCEEEEEC
T ss_pred hHHHHHhhhccCCCCeEEEecCCCCHHHHHHHHHHHcCCCcCceEEEEEcCcccCccCChhhhCCcCCceeeeee
Confidence 45688888876654 999999999999999999999999998 99999999999999999999999999999986
No 19
>2uyz_B Small ubiquitin-related modifier 1; sumoylation, cell division, nuclear protein, ubiquitin-like modifier, UBL conjugation pathway; 1.4A {Homo sapiens} SCOP: d.15.1.1 PDB: 2vrr_B 2iy0_B 2iy1_B 2g4d_B 2las_A 2io2_B 1z5s_B 3uip_B* 1tgz_B* 2bf8_B
Probab=99.47 E-value=1.3e-13 Score=98.75 Aligned_cols=75 Identities=27% Similarity=0.490 Sum_probs=70.5
Q ss_pred CcEEEEEEeCCce-EEEEEcCCChHHHHHHHHHHHcCCCCCceEEEECCcccCCCCCcccCCCCCCcEEEEEeccC
Q 027553 148 AKIVVSIQDKGGL-KQFRVYADDKFERLFKMYADKVNLDQENLVFCFDGDKIGPEATPASLEMEDNDIIEVHTKKT 222 (222)
Q Consensus 148 ~kItIkV~~qdg~-v~FkIk~tT~L~KLf~aYaer~gl~~~~lrF~FDG~rI~~~~TP~sLgMEDGDiIDV~ikQ~ 222 (222)
++|.|.|++.+|. +.|.|.+++++..|++.|+++.|++++..||+|+|+.|.++.|+.+++|++||+|++++++.
T Consensus 2 ~~m~i~vk~~~g~~~~~~v~~~~tv~~lk~~i~~~~gi~~~~qrL~~~G~~L~d~~tl~~~~i~~~~~i~l~~~~~ 77 (79)
T 2uyz_B 2 EYIKLKVIGQDSSEIHFKVKMTTHLKKLKESYCQRQGVPMNSLRFLFEGQRIADNHTPKELGMEEEDVIEVYQEQT 77 (79)
T ss_dssp CEEEEEEECTTCCEEEEEEETTSCTHHHHHHHHHHHTCCGGGEEEEETTEECCTTCCHHHHTCCTTEEEEEEECCC
T ss_pred CeEEEEEECCCCCEEEEEECCCChHHHHHHHHHHHHCCCcccEEEEECCEEeCCCCCHHHcCCCCCCEEEEEEecc
Confidence 4689999988875 78999999999999999999999999999999999999999999999999999999998763
No 20
>1wyw_B Ubiquitin-like protein SMT3C; hydrolase; 2.10A {Homo sapiens} SCOP: d.15.1.1 PDB: 1y8r_C* 2asq_A 2pe6_B 1a5r_A 2kqs_A 3kyc_D* 3rzw_C
Probab=99.42 E-value=4.5e-13 Score=100.87 Aligned_cols=77 Identities=27% Similarity=0.489 Sum_probs=72.1
Q ss_pred CCCcEEEEEEeCCce-EEEEEcCCChHHHHHHHHHHHcCCCCCceEEEECCcccCCCCCcccCCCCCCcEEEEEeccC
Q 027553 146 ERAKIVVSIQDKGGL-KQFRVYADDKFERLFKMYADKVNLDQENLVFCFDGDKIGPEATPASLEMEDNDIIEVHTKKT 222 (222)
Q Consensus 146 ~~~kItIkV~~qdg~-v~FkIk~tT~L~KLf~aYaer~gl~~~~lrF~FDG~rI~~~~TP~sLgMEDGDiIDV~ikQ~ 222 (222)
++..|.|.|+..+|. +.|.|.+++++..|+..|+++.|+++...||+|+|+.|.++.|+.+++|++|++|++++++.
T Consensus 18 ~~~~m~I~Vk~~~g~~~~l~v~~~~tv~~lK~~i~~~~gip~~~qrLif~Gk~L~d~~tl~dy~i~~g~~I~l~~~~~ 95 (97)
T 1wyw_B 18 EGEYIKLKVIGQDSSEIHFKVKMTTHLKKLKESYCQRQGVPMNSLRFLFEGQRIADNHTPKELGMEEEDVIEVYQEQT 95 (97)
T ss_dssp -CCEEEEEEECTTCCEEEEEEETTSCTHHHHHHHHHHHTCCGGGEEEEETTEECCTTCCHHHHTCCTTCEEEEEESSS
T ss_pred CCCcEEEEEEeCCCCEEEEEECCCCcHHHHHHHHHHHHCCChhhEEEEECCeEcCCCCCHHHCCCCCCCEEEEEEecC
Confidence 567899999998876 78999999999999999999999999999999999999999999999999999999998763
No 21
>3dbh_I NEDD8; cell cycle, activating enzyme, apoptosis, membrane, UBL conjugation pathway, ATP-binding, ligase, nucleotide- binding, polymorphism; 2.85A {Homo sapiens} SCOP: d.15.1.1 PDB: 3dbr_I 3dbl_I
Probab=98.89 E-value=1e-08 Score=73.92 Aligned_cols=76 Identities=13% Similarity=0.295 Sum_probs=70.6
Q ss_pred CCCcEEEEEEeCCce-EEEEEcCCChHHHHHHHHHHHcCCCCCceEEEECCcccCCCCCcccCCCCCCcEEEEEecc
Q 027553 146 ERAKIVVSIQDKGGL-KQFRVYADDKFERLFKMYADKVNLDQENLVFCFDGDKIGPEATPASLEMEDNDIIEVHTKK 221 (222)
Q Consensus 146 ~~~kItIkV~~qdg~-v~FkIk~tT~L~KLf~aYaer~gl~~~~lrF~FDG~rI~~~~TP~sLgMEDGDiIDV~ikQ 221 (222)
....+.|.|+..+|. +.+.|.+++++..|...++++.|+++...+|+|+|..|.++.|..++++.+|++|.++++.
T Consensus 9 ~~~~m~i~vk~~~g~~~~~~v~~~~tV~~lK~~i~~~~gip~~~qrL~~~G~~L~d~~tL~~~~i~~~~~i~l~~rl 85 (88)
T 3dbh_I 9 SGGSMLIKVKTLTGKEIEIDIEPTDKVERIKERVEEKEGIPPQQQRLIYSGKQMNDEKTAADYKILGGSVLHLVLRL 85 (88)
T ss_dssp CCCCEEEEEECTTSCEEEEEECTTCBHHHHHHHHHHHHCCCGGGCCEEETTEECCTTSBGGGGTCCTTCEEEECCCC
T ss_pred CCCcEEEEEEcCCCCEEEEEECCCCCHHHHHHHHHHHHCcCHHHEEEEECCeECCCCCcHHHcCCCCCCEEEEEEeC
Confidence 567799999987765 7899999999999999999999999999999999999999999999999999999998765
No 22
>3n3k_B Ubiquitin; hydrolase, protease, thiol protease, DUB, zinc ribbon, inhibitor, ubiqu acetylation, cytoplasm, isopeptide bond, nucleus; 2.60A {Homo sapiens} SCOP: d.15.1.1
Probab=98.85 E-value=1.1e-08 Score=73.19 Aligned_cols=73 Identities=14% Similarity=0.206 Sum_probs=67.2
Q ss_pred cEEEEEEeCCce-EEEEEcCCChHHHHHHHHHHHcCCCCCceEEEECCcccCCCCCcccCCCCCCcEEEEEecc
Q 027553 149 KIVVSIQDKGGL-KQFRVYADDKFERLFKMYADKVNLDQENLVFCFDGDKIGPEATPASLEMEDNDIIEVHTKK 221 (222)
Q Consensus 149 kItIkV~~qdg~-v~FkIk~tT~L~KLf~aYaer~gl~~~~lrF~FDG~rI~~~~TP~sLgMEDGDiIDV~ikQ 221 (222)
.+.|.|+..++. +.+.|.+++++..|...++++.|++++..+|+|+|+.+.++.|..++++.+|++|.++++.
T Consensus 3 ~m~i~vk~~~g~~~~~~v~~~~tV~~lK~~i~~~~~ip~~~qrL~~~g~~L~d~~tL~~~~i~~~~~i~l~~rl 76 (85)
T 3n3k_B 3 HMRIVVKTLMGRTIILEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIHNHSALYLLLKL 76 (85)
T ss_dssp -CEEEEECGGGCEEEEECCTTCBHHHHHHHHHHHHCCCGGGEEEEETBEECCTTCBTTTTTCCTTCEEEEEECC
T ss_pred eEEEEEEeCCCCEEEEEECCCCcHHHHHHHHHHHHCCCHHHEEEEECCeECCCCCCHHHCCCCCCCEEEEEEec
Confidence 577888877765 7899999999999999999999999999999999999999999999999999999999875
No 23
>3v6c_B Ubiquitin; structural genomics, structural genomics consortium, SGC, UB protease, hydrolase-signaling protein complex; 1.70A {Homo sapiens} PDB: 3v6e_B
Probab=98.85 E-value=2.2e-08 Score=73.58 Aligned_cols=76 Identities=13% Similarity=0.239 Sum_probs=70.3
Q ss_pred CCCcEEEEEEeCCce-EEEEEcCCChHHHHHHHHHHHcCCCCCceEEEECCcccCCCCCcccCCCCCCcEEEEEecc
Q 027553 146 ERAKIVVSIQDKGGL-KQFRVYADDKFERLFKMYADKVNLDQENLVFCFDGDKIGPEATPASLEMEDNDIIEVHTKK 221 (222)
Q Consensus 146 ~~~kItIkV~~qdg~-v~FkIk~tT~L~KLf~aYaer~gl~~~~lrF~FDG~rI~~~~TP~sLgMEDGDiIDV~ikQ 221 (222)
....+.|.|+..+|. +.+.|..+++...|....+++.|+++...|++|+|+.+.++.|..++|+.+|++|.+.++-
T Consensus 14 ~~~~m~i~Vk~~~g~~~~l~v~~~~TV~~LK~~I~~~~gip~~~qrL~~~Gk~L~D~~tL~~~gi~~g~~i~l~~rl 90 (91)
T 3v6c_B 14 PRGSMQIFVNTLTGTHITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRL 90 (91)
T ss_dssp CCCSEEEEEECTTSCEEEEEECTTCBHHHHHHHHHHHHCCCGGGCEEEETTEECCTTCBTGGGTCCTTCEEEEECCC
T ss_pred CCCeEEEEEEeCCCCEEEEEECCCCCHHHHHHHHHhhhCCChhhEEEEECCeECCCcCcHHHCCCCCCCEEEEEEec
Confidence 467899999987775 7899999999999999999999999999999999999999999999999999999998763
No 24
>3mtn_B UBA80, ubcep1, ubiquitin variant UBV.21.4; ubiquitin-specific protease activity, hydrolase, ubiquitin B structural genomics consortium, SGC; 2.70A {Homo sapiens} SCOP: d.15.1.1
Probab=98.80 E-value=3.1e-08 Score=70.57 Aligned_cols=74 Identities=12% Similarity=0.192 Sum_probs=68.2
Q ss_pred CcEEEEEEeCCce-EEEEEcCCChHHHHHHHHHHHcCCCCCceEEEECCcccCCCCCcccCCCCCCcEEEEEecc
Q 027553 148 AKIVVSIQDKGGL-KQFRVYADDKFERLFKMYADKVNLDQENLVFCFDGDKIGPEATPASLEMEDNDIIEVHTKK 221 (222)
Q Consensus 148 ~kItIkV~~qdg~-v~FkIk~tT~L~KLf~aYaer~gl~~~~lrF~FDG~rI~~~~TP~sLgMEDGDiIDV~ikQ 221 (222)
..+.|.|+..++. +.+.|.+++++..|...++++.|++++..+|+|+|+.|.++.|..++++.+|++|.++++.
T Consensus 2 s~m~i~vk~~~g~~~~~~v~~~~tV~~lK~~i~~~~~i~~~~qrL~~~g~~L~d~~tL~~~~i~~~~~l~l~~r~ 76 (85)
T 3mtn_B 2 SHMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKWSTLFLLLRL 76 (85)
T ss_dssp -CEEEEEECTTSCEEEEEECTTCBHHHHHHHHHHHHCCCGGGCEEEETTEECCTTSBTGGGTCCTTCEEEEECCC
T ss_pred CeEEEEEEcCCCCEEEEEECCCCCHHHHHHHHHHHHCcChHHEEEEECCEECCCCCCHHHcCCCCCCEEEEEEEC
Confidence 3578888887765 7899999999999999999999999999999999999999999999999999999998865
No 25
>3phx_B Ubiquitin-like protein ISG15; OTU domain, DE-ubiquitinase, DE-isgylase, hydrolase-protein complex; 1.60A {Homo sapiens}
Probab=98.79 E-value=4.1e-08 Score=69.82 Aligned_cols=74 Identities=7% Similarity=0.182 Sum_probs=68.5
Q ss_pred CcEEEEEEeCCce-EEEEEcCCChHHHHHHHHHHHcCCCCCceEEEECCcccCCCCCcccCCCCCCcEEEEEecc
Q 027553 148 AKIVVSIQDKGGL-KQFRVYADDKFERLFKMYADKVNLDQENLVFCFDGDKIGPEATPASLEMEDNDIIEVHTKK 221 (222)
Q Consensus 148 ~kItIkV~~qdg~-v~FkIk~tT~L~KLf~aYaer~gl~~~~lrF~FDG~rI~~~~TP~sLgMEDGDiIDV~ikQ 221 (222)
..+.|.|+..+|. +.+.|.++++...|....+++.|++++..|++|.|+.+.++.|..++++++|++|.+.++.
T Consensus 3 ~~m~i~Vk~~~g~~~~~~v~~~~tV~~lK~~i~~~~gip~~~qrL~~~G~~L~d~~tL~~~~i~~~~~l~l~~rl 77 (79)
T 3phx_B 3 EPLSILVRNNKGRSSTYEVRLTQTVAHLKQQVSGLEGVQDDLFWLTFEGKPLEDQLPLGEYGLKPLSTVFMNLRL 77 (79)
T ss_dssp CCEEEEEECTTSCEEEEEECTTSBHHHHHHHHHHHHTCCGGGEEEEETTEECCTTSBGGGGTCCTTCEEEEEECC
T ss_pred CCEEEEEEeCCCCEEEEEECCcChHHHHHHHHHhhcCCCHHHEEEEECCEECCCCCcHHHCCCCCCCEEEEEEec
Confidence 4578889887775 7899999999999999999999999999999999999999999999999999999998764
No 26
>1ttn_A DC-UBP, dendritic cell-derived ubiquitin-like protein; ubiquitin-like domain, solution structure, signaling protein; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=98.79 E-value=2.5e-08 Score=75.86 Aligned_cols=82 Identities=10% Similarity=0.155 Sum_probs=70.1
Q ss_pred CCCCcCCCCcEEEEEEeCCce-EEEEEcCCChHHHHHHHHHHHcCCCCCceEEEECCcccCCCCCcccCCCCCCcEEEEE
Q 027553 140 VSKPAIERAKIVVSIQDKGGL-KQFRVYADDKFERLFKMYADKVNLDQENLVFCFDGDKIGPEATPASLEMEDNDIIEVH 218 (222)
Q Consensus 140 ~~~p~~~~~kItIkV~~qdg~-v~FkIk~tT~L~KLf~aYaer~gl~~~~lrF~FDG~rI~~~~TP~sLgMEDGDiIDV~ 218 (222)
++++......+.|.|+..+|. +.+.|..++++..|...++.+.|++++..||+|.|+.|..+.|..++|+.+|++|.++
T Consensus 14 ~~~~~~~~~~m~I~Vk~~~g~~~~l~v~~~~TV~~LK~~I~~~~gip~~~qrLi~~Gk~L~D~~tL~~ygI~~g~ti~lv 93 (106)
T 1ttn_A 14 PEPPPNSGYECQLRLRLSTGKDLKLVVRSTDTVFHMKRRLHAAEGVEPGSQRWFFSGRPLTDKMKFEELKIPKDYVVQVI 93 (106)
T ss_dssp -------CCSEEEEEEETTTEEEEEEECTTSHHHHHHHHHHHTTCCCSTTCEEEETTEECCTTSHHHHCCCSSSCEEEEE
T ss_pred CCCCCCCCCeEEEEEEcCCCCEEEEEeCCCCcHHHHHHHHHHHHCcCcccEEEEECCEECCCCCcHHHcCCCCCCEEEEE
Confidence 343333677899999987765 7899999999999999999999999999999999999999999999999999999998
Q ss_pred ecc
Q 027553 219 TKK 221 (222)
Q Consensus 219 ikQ 221 (222)
..+
T Consensus 94 ~~~ 96 (106)
T 1ttn_A 94 VSQ 96 (106)
T ss_dssp CCC
T ss_pred EeC
Confidence 764
No 27
>1wh3_A 59 kDa 2'-5'-oligoadenylate synthetase like protein; P59 OASL, ubiquitin family, structural genomics; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=98.77 E-value=4.8e-08 Score=70.48 Aligned_cols=76 Identities=16% Similarity=0.201 Sum_probs=69.6
Q ss_pred CCCcEEEEEEeCCce-EEEEEcCCChHHHHHHHHHHHcCCCCCceEEEECCcccCCCCCcccCCCCCCcEEEEEecc
Q 027553 146 ERAKIVVSIQDKGGL-KQFRVYADDKFERLFKMYADKVNLDQENLVFCFDGDKIGPEATPASLEMEDNDIIEVHTKK 221 (222)
Q Consensus 146 ~~~kItIkV~~qdg~-v~FkIk~tT~L~KLf~aYaer~gl~~~~lrF~FDG~rI~~~~TP~sLgMEDGDiIDV~ikQ 221 (222)
+...+.|.|+..++. +.+.|.+++++..|...++++.|++++..||+|+|+.+.++.|..++++.+|++|.++.+.
T Consensus 4 ~~~~m~i~Vk~~~g~~~~~~v~~~~tV~~lK~~i~~~~gi~~~~qrL~~~Gk~L~d~~tL~~~~i~~g~~i~l~~~~ 80 (87)
T 1wh3_A 4 GSSGIQVFVKNPDGGSYAYAINPNSFILGLKQQIEDQQGLPKKQQQLEFQGQVLQDWLGLGIYGIQDSDTLILSKKK 80 (87)
T ss_dssp CSSSEEEEEEETTTEEEEEEECSSSBHHHHHHHHHHHTCCCTTTEEEEETTEECCSSSBHHHHTCCTTEEEEEEECS
T ss_pred CCCCEEEEEEcCCCCEEEEEeCCCChHHHHHHHHHHHhCCChHHEEEEECCEEccCCCCHHHCCCCCCCEEEEEEec
Confidence 345688999887765 7899999999999999999999999999999999999999999999999999999998764
No 28
>3a9j_A Ubiquitin; protein complex, cytoplasm, isopeptide bond, metal-binding, zinc; 1.18A {Mus musculus} PDB: 3a1q_B 2znv_B 3a9k_A 3h7p_A 3jsv_A 3dvg_Y 3dvn_Y 3nob_A 2o6v_D* 3jw0_X 3jvz_X 3nhe_B* 1aar_A 1d3z_A 1f9j_A 1fxt_B 1g6j_A 1nbf_C 1cmx_B 1q5w_B ...
Probab=98.77 E-value=4.2e-08 Score=68.17 Aligned_cols=71 Identities=13% Similarity=0.217 Sum_probs=65.1
Q ss_pred EEEEEeCCce-EEEEEcCCChHHHHHHHHHHHcCCCCCceEEEECCcccCCCCCcccCCCCCCcEEEEEecc
Q 027553 151 VVSIQDKGGL-KQFRVYADDKFERLFKMYADKVNLDQENLVFCFDGDKIGPEATPASLEMEDNDIIEVHTKK 221 (222)
Q Consensus 151 tIkV~~qdg~-v~FkIk~tT~L~KLf~aYaer~gl~~~~lrF~FDG~rI~~~~TP~sLgMEDGDiIDV~ikQ 221 (222)
.|.|+..+|. +.+.|.+++++..|...++++.|++++..+++|+|+.+.++.|..++++.+|++|.+.++.
T Consensus 2 ~i~vk~~~g~~~~i~v~~~~tv~~lK~~i~~~~~i~~~~q~L~~~g~~L~d~~tL~~~~i~~g~~i~l~~~~ 73 (76)
T 3a9j_A 2 QIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQRESTLHLVLRL 73 (76)
T ss_dssp EEEEEETTSCEEEEECCTTCBHHHHHHHHHHHHCCCGGGEEEEETTEECCTTCBTGGGTCCTTCEEEEEECC
T ss_pred EEEEEcCCCCEEEEEECCCCcHHHHHHHHHHHHCcCHHHeEEEECCeECCCCCcHHHcCCCCCCEEEEEEeC
Confidence 5677776665 7899999999999999999999999999999999999999999999999999999998764
No 29
>1ndd_A NEDD8, protein (ubiquitin-like protein NEDD8); proteolysis, signaling protei; 1.60A {Homo sapiens} SCOP: d.15.1.1 PDB: 1r4m_I 1r4n_I* 1xt9_B 2ko3_A 3gzn_I* 2bkr_B 2nvu_I* 3dqv_A 1bt0_A
Probab=98.76 E-value=4.2e-08 Score=68.19 Aligned_cols=71 Identities=14% Similarity=0.291 Sum_probs=65.3
Q ss_pred EEEEEeCCce-EEEEEcCCChHHHHHHHHHHHcCCCCCceEEEECCcccCCCCCcccCCCCCCcEEEEEecc
Q 027553 151 VVSIQDKGGL-KQFRVYADDKFERLFKMYADKVNLDQENLVFCFDGDKIGPEATPASLEMEDNDIIEVHTKK 221 (222)
Q Consensus 151 tIkV~~qdg~-v~FkIk~tT~L~KLf~aYaer~gl~~~~lrF~FDG~rI~~~~TP~sLgMEDGDiIDV~ikQ 221 (222)
.|.|+..+|. +.+.+.++++...|...++++.|++++..+++|+|+.+.++.|..++++.+|++|.++++.
T Consensus 2 ~i~vk~~~g~~~~~~v~~~~tv~~lK~~i~~~~~i~~~~q~L~~~g~~L~d~~tL~~~~i~~g~~i~l~~~~ 73 (76)
T 1ndd_A 2 LIKVKTLTGKEIEIDIEPTDKVERIKERVEEKEGIPPQQQRLIYSGKQMNDEKTAADYKILGGSVLHLVLAL 73 (76)
T ss_dssp EEEEECTTSCEEEEECCTTCBHHHHHHHHHHHHCCCGGGEEEEETTEECCTTSBGGGGTCCTTCEEEEEECC
T ss_pred EEEEECCCCCEEEEEECCCChHHHHHHHHHHHHCcChHHEEEEECCEECCCCCcHHHcCCCCCCEEEEEEeC
Confidence 5777776665 7899999999999999999999999999999999999999999999999999999998764
No 30
>2bwf_A Ubiquitin-like protein DSK2; signaling protein, UBA, signaling proteins; 1.15A {Saccharomyces cerevisiae} SCOP: d.15.1.1 PDB: 2bwe_S
Probab=98.76 E-value=7.4e-08 Score=67.54 Aligned_cols=71 Identities=11% Similarity=0.198 Sum_probs=65.5
Q ss_pred EEEEEEeCCce-EEEEEcCCChHHHHHHHHHHHcCCCCCceEEEECCcccCCCCCcccCCCCCCcEEEEEecc
Q 027553 150 IVVSIQDKGGL-KQFRVYADDKFERLFKMYADKVNLDQENLVFCFDGDKIGPEATPASLEMEDNDIIEVHTKK 221 (222)
Q Consensus 150 ItIkV~~qdg~-v~FkIk~tT~L~KLf~aYaer~gl~~~~lrF~FDG~rI~~~~TP~sLgMEDGDiIDV~ikQ 221 (222)
+.|.|+. +|. +.+.|.++++...|....+.+.|++++..+++|.|+.+.++.|..++|+.+|++|.+..++
T Consensus 5 m~i~vk~-~g~~~~~~v~~~~tV~~LK~~i~~~~~i~~~~qrL~~~gk~L~d~~tL~~~~i~~g~~i~l~~~~ 76 (77)
T 2bwf_A 5 LNIHIKS-GQDKWEVNVAPESTVLQFKEAINKANGIPVANQRLIYSGKILKDDQTVESYHIQDGHSVHLVKSQ 76 (77)
T ss_dssp EEEEEEE-TTEEEEEEECTTCBHHHHHHHHHHHHCCCGGGEEEEETTEECCTTSBTGGGTCCTTCEEEEEECC
T ss_pred EEEEEEE-CCEEEEEEECCCCcHHHHHHHHHHHhCCCHHHEEEEECCeEcCCCCCHHHcCCCCCCEEEEEEcC
Confidence 6788887 554 7899999999999999999999999999999999999999999999999999999998765
No 31
>2dzi_A Ubiquitin-like protein 4A; GDX, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=98.75 E-value=5.1e-08 Score=68.99 Aligned_cols=75 Identities=13% Similarity=0.243 Sum_probs=68.7
Q ss_pred CCCcEEEEEEeCCce-EEEEEcCCChHHHHHHHHHHHcCCCCCceEEEECCcccCCCCCcccCCCCCCcEEEEEec
Q 027553 146 ERAKIVVSIQDKGGL-KQFRVYADDKFERLFKMYADKVNLDQENLVFCFDGDKIGPEATPASLEMEDNDIIEVHTK 220 (222)
Q Consensus 146 ~~~kItIkV~~qdg~-v~FkIk~tT~L~KLf~aYaer~gl~~~~lrF~FDG~rI~~~~TP~sLgMEDGDiIDV~ik 220 (222)
+...+.|.|+..+|. +.+.|..+++...|....+++.|++++..+++|+|+.+.++.|-.++|+.+|++|.++++
T Consensus 4 ~~~~m~i~vk~~~g~~~~~~v~~~~tV~~LK~~i~~~~~i~~~~qrL~~~gk~L~d~~tL~~~~i~~g~~i~l~~~ 79 (81)
T 2dzi_A 4 GSSGMQLTVKALQGRECSLQVPEDELVSTLKQLVSEKLNVPVRQQRLLFKGKALADGKRLSDYSIGPNSKLNLVVK 79 (81)
T ss_dssp SSSSEEEEEEETTSCEEEEEECSSCBHHHHHHHHHHHTCCCTTTCEEEETTEECCTTSBGGGGTCCSSBCCEEECC
T ss_pred CCCcEEEEEEeCCCCEEEEEECCCCcHHHHHHHHHHHHCcCHHHEEEEECCeECCCCCcHHHcCCCCCCEEEEEEe
Confidence 456788888877665 689999999999999999999999999999999999999999999999999999998875
No 32
>4hcn_B Polyubiquitin, ubiquitin; ubiquitin/NEDD8 deamidase, NEDD8, protein binding; 2.60A {Saccharomyces cerevisiae}
Probab=98.75 E-value=3.4e-08 Score=73.91 Aligned_cols=76 Identities=11% Similarity=0.217 Sum_probs=68.4
Q ss_pred CCCcEEEEEEeCCce-EEEEEcCCChHHHHHHHHHHHcCCCCCceEEEECCcccCCCCCcccCCCCCCcEEEEEecc
Q 027553 146 ERAKIVVSIQDKGGL-KQFRVYADDKFERLFKMYADKVNLDQENLVFCFDGDKIGPEATPASLEMEDNDIIEVHTKK 221 (222)
Q Consensus 146 ~~~kItIkV~~qdg~-v~FkIk~tT~L~KLf~aYaer~gl~~~~lrF~FDG~rI~~~~TP~sLgMEDGDiIDV~ikQ 221 (222)
....+.|.|+..+|. +.+.|.+++++..|....+++.|+++...||+|+|+.|.++.|..++++++|++|.++++.
T Consensus 19 ~~~~m~I~Vk~~~g~~~~l~v~~~~TV~~LK~~I~~~~gip~~~qrLi~~Gk~L~D~~tL~~~~i~~g~~i~l~~rl 95 (98)
T 4hcn_B 19 QGRPMQIFVKTLTGKTITLEVESSDTIDNVKSKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRL 95 (98)
T ss_dssp ---CCEEEEEETTCCEEEEECCTTCBHHHHHHHHHHHHCCCGGGCEEEETTEECCTTCBSGGGTCCTTEEEEEECBC
T ss_pred CCCeEEEEEEeCCCCEEEEEECCCCcHHHHHHHHHHHhCCChhHEEEEECCEECCCCCcHHHCCCCCCCEEEEEEec
Confidence 566788888887775 7899999999999999999999999999999999999999999999999999999998865
No 33
>3k9o_B Ubiquitin, UBB+1; E2-25K, complex structure, ATP-binding, isopeptide BO ligase, nucleotide-binding, UBL conjugation pathway; 1.80A {Homo sapiens} PDB: 2k25_A 2kx0_A
Probab=98.72 E-value=6.3e-08 Score=71.20 Aligned_cols=72 Identities=13% Similarity=0.230 Sum_probs=65.7
Q ss_pred EEEEEEeCCce-EEEEEcCCChHHHHHHHHHHHcCCCCCceEEEECCcccCCCCCcccCCCCCCcEEEEEecc
Q 027553 150 IVVSIQDKGGL-KQFRVYADDKFERLFKMYADKVNLDQENLVFCFDGDKIGPEATPASLEMEDNDIIEVHTKK 221 (222)
Q Consensus 150 ItIkV~~qdg~-v~FkIk~tT~L~KLf~aYaer~gl~~~~lrF~FDG~rI~~~~TP~sLgMEDGDiIDV~ikQ 221 (222)
+.|.|+..+|. +.+.|..+++...|...++++.|++++..||+|+|..|.++.|..++++.+|++|.++++.
T Consensus 2 m~i~vk~~~g~~~~~~v~~~~TV~~LK~~i~~~~gip~~~qrL~~~G~~L~d~~tL~~~~i~~~~~i~l~~r~ 74 (96)
T 3k9o_B 2 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRL 74 (96)
T ss_dssp CEEEEEETTCCEEEEECCTTCBHHHHHHHHHHHHCCCGGGEEEEETTEECCTTSBTGGGTCCTTCEEEEEECC
T ss_pred cEEEEEeCCCCEEEEEECCCCCHHHHHHHHHhhhCCChhHEEEEECCEECCCCCcHHHcCCCCCCEEEEEEEc
Confidence 45677776665 7899999999999999999999999999999999999999999999999999999998764
No 34
>3vdz_A Ubiquitin-40S ribosomal protein S27A; gadolinium, MRI contrast agent, peptide-based contrast agent lanthanide binding TAG; 2.40A {Synthetic construct} PDB: 2ojr_A
Probab=98.70 E-value=1.1e-07 Score=73.11 Aligned_cols=76 Identities=13% Similarity=0.217 Sum_probs=70.1
Q ss_pred CCCcEEEEEEeCCce-EEEEEcCCChHHHHHHHHHHHcCCCCCceEEEECCcccCCCCCcccCCCCCCcEEEEEecc
Q 027553 146 ERAKIVVSIQDKGGL-KQFRVYADDKFERLFKMYADKVNLDQENLVFCFDGDKIGPEATPASLEMEDNDIIEVHTKK 221 (222)
Q Consensus 146 ~~~kItIkV~~qdg~-v~FkIk~tT~L~KLf~aYaer~gl~~~~lrF~FDG~rI~~~~TP~sLgMEDGDiIDV~ikQ 221 (222)
....+.|.|+..+|. +.|.|.+++++..|...++++.|+++...||+|.|+.|..+.|..++++.+|++|.++++.
T Consensus 32 ~~~~m~I~Vk~~~G~~~~l~v~~~~TV~~LK~~I~~~~gip~~~QrLi~~Gk~L~D~~tL~~~gI~~gs~I~l~~rl 108 (111)
T 3vdz_A 32 ELLAMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRL 108 (111)
T ss_dssp GGGCEEEEEECSSSCEEEEEECTTCBHHHHHHHHHHHHCCCGGGEEEEETTEECCTTSBTTTTTCCTTCEEEEEECC
T ss_pred CCccEEEEEEeCCCCEEEEEeCCCCCHHHHHHHHHHHhCCChHHEEEEECCEECCCCCcHHHCCCCCCCEEEEEEec
Confidence 345789999987765 7899999999999999999999999999999999999999999999999999999999875
No 35
>2faz_A Ubiquitin-like containing PHD and ring finger DOM protein 1; cell cycle, DNA damage, DNA repair, DNA-binding, ligase, Met binding, nuclear protein; 2.00A {Homo sapiens} SCOP: d.15.1.1
Probab=98.68 E-value=1.8e-07 Score=66.15 Aligned_cols=74 Identities=14% Similarity=0.212 Sum_probs=66.9
Q ss_pred cEEEEEEeCCce-E-EEE-EcCCChHHHHHHHHHHHcCCCCCceEEEECCcccCCCCCcccCCCCCCcEEEEEeccC
Q 027553 149 KIVVSIQDKGGL-K-QFR-VYADDKFERLFKMYADKVNLDQENLVFCFDGDKIGPEATPASLEMEDNDIIEVHTKKT 222 (222)
Q Consensus 149 kItIkV~~qdg~-v-~Fk-Ik~tT~L~KLf~aYaer~gl~~~~lrF~FDG~rI~~~~TP~sLgMEDGDiIDV~ikQ~ 222 (222)
.+.|.|+..+|. + .+. |.++++...|....+++.|++++..|++|.|+.+.++.|..++|+.+|++|.++++++
T Consensus 2 ~m~i~Vk~~~g~~~~~l~~v~~~~tv~~lK~~i~~~~gip~~~qrL~~~g~~L~d~~tL~~~~i~~g~~i~l~~r~~ 78 (78)
T 2faz_A 2 SMWIQVRTMDGRQTHTVDSLSRLTKVEELRRKIQELFHVEPGLQRLFYRGKQMEDGHTLFDYEVRLNDTIQLLVRQS 78 (78)
T ss_dssp CEEEEEEETTSSCEEEEEEECTTCBHHHHHHHHHHHHCCCGGGEEEEETTEECCTTCBTTTTTCCTTCEEEEEECCC
T ss_pred cEEEEEEECCCCEEEEEeccCCCCCHHHHHHHHHHHHCcChhhEEEEECCEECCCCCCHHHcCCCCCCEEEEEEeCC
Confidence 367788877664 4 788 9999999999999999999999999999999999999999999999999999998763
No 36
>2ojr_A Ubiquitin; lanthide-binding TAG, terbium, TB, SAD phasing, protein binding; 2.60A {Homo sapiens}
Probab=98.63 E-value=2.5e-07 Score=70.84 Aligned_cols=75 Identities=12% Similarity=0.204 Sum_probs=69.4
Q ss_pred CCcEEEEEEeCCce-EEEEEcCCChHHHHHHHHHHHcCCCCCceEEEECCcccCCCCCcccCCCCCCcEEEEEecc
Q 027553 147 RAKIVVSIQDKGGL-KQFRVYADDKFERLFKMYADKVNLDQENLVFCFDGDKIGPEATPASLEMEDNDIIEVHTKK 221 (222)
Q Consensus 147 ~~kItIkV~~qdg~-v~FkIk~tT~L~KLf~aYaer~gl~~~~lrF~FDG~rI~~~~TP~sLgMEDGDiIDV~ikQ 221 (222)
...+.|.|+..+|. +.+.|..++++..|....+++.|++++..+|+|+|+.|.++.|..++++.+|++|.+++++
T Consensus 33 ~~~m~I~Vk~~~g~~~~l~v~~~~TV~~LK~~I~~~~gip~~~qrLi~~Gk~L~D~~tL~~~gI~~gs~I~l~~rl 108 (111)
T 2ojr_A 33 LLAMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRL 108 (111)
T ss_dssp SSCEEEEEECSSSCEEEEEECTTCBHHHHHHHHHHHHCCCTTTEEEEETTEECCSSCBTTTTTCCTTCEEEEEECC
T ss_pred CCeEEEEEEcCCCCEEEEEeCCCCCHHHHHHHHHHHHCcCcccEEEEECCEECCCCCcHHHcCCCCCCEEEEEEeC
Confidence 45789999887765 7899999999999999999999999999999999999999999999999999999998875
No 37
>1wx7_A Ubiquilin 3; ubiquitin-like domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=98.62 E-value=2.6e-07 Score=69.93 Aligned_cols=76 Identities=16% Similarity=0.248 Sum_probs=69.9
Q ss_pred CCCcEEEEEEeCCceEEEEEcCCChHHHHHHHHHHHcCCCCCceEEEECCcccCCCCCcccCCCCCCcEEEEEecc
Q 027553 146 ERAKIVVSIQDKGGLKQFRVYADDKFERLFKMYADKVNLDQENLVFCFDGDKIGPEATPASLEMEDNDIIEVHTKK 221 (222)
Q Consensus 146 ~~~kItIkV~~qdg~v~FkIk~tT~L~KLf~aYaer~gl~~~~lrF~FDG~rI~~~~TP~sLgMEDGDiIDV~ikQ 221 (222)
....+.|.|+..++.+.+.|..++++..|....+++.|++++..||+|.|+.|.++.|-.++++.+|++|.++.+.
T Consensus 14 ~~~~m~I~Vk~~~g~~~l~v~~~~TV~~LK~~I~~~~gip~~~qrLi~~Gk~L~D~~tL~~~gi~~g~~i~l~~~~ 89 (106)
T 1wx7_A 14 DPHLIKVTVKTPKDKEDFSVTDTCTIQQLKEEISQRFKAHPDQLVLIFAGKILKDPDSLAQCGVRDGLTVHLVIKR 89 (106)
T ss_dssp CSSEEEEEEECSSCEEEEEEETTCCHHHHHHHHHHHHTCCTTTEEEEETTEECCTTSCHHHHTCCTTEEEEEEECC
T ss_pred CCceEEEEEEeCCCcEEEEECCCCcHHHHHHHHHHHHCcChhhEEEEECCEECCCcCcHHHcCCCCCCEEEEEEcC
Confidence 4567899998877777899999999999999999999999999999999999999999999999999999998764
No 38
>4dwf_A HLA-B-associated transcript 3; ubiquitin-like domain, BAT3 protein, PF00240, structural GEN joint center for structural genomics, JCSG; 1.80A {Homo sapiens} PDB: 1wx9_A
Probab=98.61 E-value=3.1e-07 Score=66.85 Aligned_cols=74 Identities=12% Similarity=0.205 Sum_probs=67.7
Q ss_pred CCcEEEEEEeCCce-EEEEEcCCChHHHHHHHHHHHcCCCCCceEEEECCcccCCCCCcccCCCCCCcEEEEEecc
Q 027553 147 RAKIVVSIQDKGGL-KQFRVYADDKFERLFKMYADKVNLDQENLVFCFDGDKIGPEATPASLEMEDNDIIEVHTKK 221 (222)
Q Consensus 147 ~~kItIkV~~qdg~-v~FkIk~tT~L~KLf~aYaer~gl~~~~lrF~FDG~rI~~~~TP~sLgMEDGDiIDV~ikQ 221 (222)
...+.|.|+..+|. +.+.|..+++...|....+++.|+++...||+|.|+.|.++.|..++++ +|++|.++.+.
T Consensus 3 ~~~m~i~Vk~~~g~~~~~~v~~~~tV~~lK~~i~~~~gip~~~qrLi~~Gk~L~d~~tL~~~~i-~g~~i~l~~~~ 77 (90)
T 4dwf_A 3 PDSLEVLVKTLDSQTRTFIVGAQMNVKEFKEHIAASVSIPSEKQRLIYQGRVLQDDKKLQEYNV-GGKVIHLVERA 77 (90)
T ss_dssp CCEEEEEEEETTCCEEEEEEETTCBHHHHHHHHHHHHTCCGGGEEEEETTEECCTTSBGGGGTC-TTEEEEEEECC
T ss_pred CcEEEEEEEcCCCCEEEEEECCCCCHHHHHHHHHHHhCCCHHHEEEEECCeECCCCCCHHHcCC-CCcEEEEEecC
Confidence 45688899887765 7899999999999999999999999999999999999999999999999 89999988764
No 39
>1yx5_B Ubiquitin; proteasome, UIM, hydrolase; NMR {Homo sapiens} SCOP: d.15.1.1 PDB: 1yx6_B
Probab=98.60 E-value=2.3e-07 Score=68.93 Aligned_cols=71 Identities=13% Similarity=0.221 Sum_probs=64.7
Q ss_pred EEEEEeCCce-EEEEEcCCChHHHHHHHHHHHcCCCCCceEEEECCcccCCCCCcccCCCCCCcEEEEEecc
Q 027553 151 VVSIQDKGGL-KQFRVYADDKFERLFKMYADKVNLDQENLVFCFDGDKIGPEATPASLEMEDNDIIEVHTKK 221 (222)
Q Consensus 151 tIkV~~qdg~-v~FkIk~tT~L~KLf~aYaer~gl~~~~lrF~FDG~rI~~~~TP~sLgMEDGDiIDV~ikQ 221 (222)
.|.|+..+|. +.+.|.+++++..|...++++.|++++..+|+|+|+.|.++.|..++|+.+|++|.+..+.
T Consensus 2 ~I~Vk~~~g~~~~~~v~~~~TV~~LK~~I~~~~gi~~~~qrL~~~Gk~L~D~~tL~~~gi~~g~~i~l~~~~ 73 (98)
T 1yx5_B 2 QIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRL 73 (98)
T ss_dssp EEEEEETTSCEEEEECCTTCBHHHHHHHHHHHTCCCGGGEEEEETTEECCTTSBTGGGTCCTTCEEEEEECC
T ss_pred EEEEEeCCCCEEEEEECCCCcHHHHHHHHHHHHCcChhhEEEEECCEECCCCCCHHHcCCCCCCEEEEEEeC
Confidence 5677776665 7899999999999999999999999999999999999999999999999999999988754
No 40
>1wx8_A Riken cDNA 4931431F19; ubiquitin-like domain, ubiquilin 1-like, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.15.1.1
Probab=98.60 E-value=1.4e-07 Score=69.74 Aligned_cols=76 Identities=16% Similarity=0.255 Sum_probs=68.7
Q ss_pred CCCcEEEEEEeCCceEEEEEcCCChHHHHHHHHHHHcCCCCCceEEEECCcccCCCCCcccCCCCCCcEEEEEecc
Q 027553 146 ERAKIVVSIQDKGGLKQFRVYADDKFERLFKMYADKVNLDQENLVFCFDGDKIGPEATPASLEMEDNDIIEVHTKK 221 (222)
Q Consensus 146 ~~~kItIkV~~qdg~v~FkIk~tT~L~KLf~aYaer~gl~~~~lrF~FDG~rI~~~~TP~sLgMEDGDiIDV~ikQ 221 (222)
....|.|.|+..+..+.+.|..++++..|...++++.|++++..||+|.|+.|.++.|..++++.+|++|.++.+.
T Consensus 14 ~~~~m~i~Vk~~g~~~~~~v~~~~TV~~LK~~I~~~~gip~~~qrL~~~Gk~L~D~~tL~~~gi~~g~~i~l~~~~ 89 (96)
T 1wx8_A 14 SSRIIRVSVKTPQDCHEFFLAENSNVRRFKKQISKYLHCNADRLVLIFTGKILRDQDILSQRGILDGSTVHVVVRS 89 (96)
T ss_dssp CSCEEEEEEECSSSEEEEEEETTCCHHHHHHHHHHHTCSCTTTBCCEETTEECCTTSCHHHHTCCTTEEEECCBCC
T ss_pred CCCcEEEEEEECCeEEEEEECCCCCHHHHHHHHHHHhCCCHHHEEEEECCEECCCcCCHHHCCCCCCCEEEEEEeC
Confidence 3467888888874457899999999999999999999999999999999999999999999999999999988754
No 41
>2hj8_A Interferon-induced 17 kDa protein; HR2873B, human ISG15, structure, northeast structural genomics consortium, protein structure initiative, NESG; NMR {Homo sapiens}
Probab=98.59 E-value=1.5e-07 Score=68.91 Aligned_cols=73 Identities=7% Similarity=0.184 Sum_probs=66.7
Q ss_pred cEEEEEEeCCce-EEEEEcCCChHHHHHHHHHHHcCCCCCceEEEECCcccCCCCCcccCCCCCCcEEEEEecc
Q 027553 149 KIVVSIQDKGGL-KQFRVYADDKFERLFKMYADKVNLDQENLVFCFDGDKIGPEATPASLEMEDNDIIEVHTKK 221 (222)
Q Consensus 149 kItIkV~~qdg~-v~FkIk~tT~L~KLf~aYaer~gl~~~~lrF~FDG~rI~~~~TP~sLgMEDGDiIDV~ikQ 221 (222)
.+.|.|+..+|. +.+.|.++++...|...++.+.|+++...||+|.|+.|.++.|..++++.+|++|.+....
T Consensus 4 ~m~I~Vk~~~g~~~~~~v~~~~TV~~LK~~I~~~~gip~~~qrL~~~Gk~L~D~~tL~~~~I~~g~~i~l~~~~ 77 (88)
T 2hj8_A 4 PLSILVRNNKGRSSTYEVRLTQTVAHLKQQVSGLEGVQDDLFWLTFEGKPLEDQLPLGEYGLKPLSTVFMNLRL 77 (88)
T ss_dssp EEEEEEEETTSCEEEEEEESSSBHHHHHHHHHHHTCSCTTTEEEESSSSCCCTTSBHHHHHCSTTCEEEEEEC-
T ss_pred cEEEEEECCCCCEEEEEECCCCcHHHHHHHHHHHhCCChhHEEEEECCEECCCCCcHHHcCCCCCCEEEEEEEc
Confidence 578888887665 7899999999999999999999999999999999999999999999999999999998764
No 42
>1wy8_A NP95-like ring finger protein, isoform A; ubiquitin-like domain, NP95/ICBP90-like ring finger (NIRF), ubiquitin ligase, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=98.55 E-value=4.9e-07 Score=65.53 Aligned_cols=76 Identities=14% Similarity=0.174 Sum_probs=68.8
Q ss_pred CCCcEEEEEEeCCc-e-EEE-EEcCCChHHHHHHHHHHHcCCCCCceEEEECCcccCCCCCcccCCCCCCcEEEEEecc
Q 027553 146 ERAKIVVSIQDKGG-L-KQF-RVYADDKFERLFKMYADKVNLDQENLVFCFDGDKIGPEATPASLEMEDNDIIEVHTKK 221 (222)
Q Consensus 146 ~~~kItIkV~~qdg-~-v~F-kIk~tT~L~KLf~aYaer~gl~~~~lrF~FDG~rI~~~~TP~sLgMEDGDiIDV~ikQ 221 (222)
+...+.|.|+..+| . +.+ .|.++++...|....+++.|++++..||+|.|+.|.++.|-.++++.+|++|.++++.
T Consensus 4 ~~~~m~i~Vk~~~g~~~~~l~~v~~~~tV~~lK~~i~~~~gip~~~qrL~~~gk~L~d~~tL~~~~i~~g~~i~l~~~~ 82 (89)
T 1wy8_A 4 GSSGMWIQVRTIDGSKTCTIEDVSRKATIEELRERVWALFDVRPECQRLFYRGKQLENGYTLFDYDVGLNDIIQLLVRP 82 (89)
T ss_dssp CSSCEEEEEEETTCSCEEEEEEECTTCBHHHHHHHHHHHSCCCTTTEEEEETTEECCSSSBHHHHTCCTTCEEEEEECC
T ss_pred CCCcEEEEEEECCCCceEEEEecCCCCCHHHHHHHHHHHHCcChhhEEEEECCeECCCCCCHHHCCCCCCCEEEEEEeC
Confidence 45678888888766 4 788 5999999999999999999999999999999999999999999999999999998764
No 43
>1j8c_A Ubiquitin-like protein hplic-2; ubiquitin-like domain, structural genomics; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=98.55 E-value=7.2e-07 Score=70.31 Aligned_cols=76 Identities=16% Similarity=0.266 Sum_probs=68.5
Q ss_pred CCCcEEEEEEeCCceEEEEEcCCChHHHHHHHHHHHcCCCCCceEEEECCcccCCCCCcccCCCCCCcEEEEEecc
Q 027553 146 ERAKIVVSIQDKGGLKQFRVYADDKFERLFKMYADKVNLDQENLVFCFDGDKIGPEATPASLEMEDNDIIEVHTKK 221 (222)
Q Consensus 146 ~~~kItIkV~~qdg~v~FkIk~tT~L~KLf~aYaer~gl~~~~lrF~FDG~rI~~~~TP~sLgMEDGDiIDV~ikQ 221 (222)
+...|.|.|+..+..+.+.|..++++..|...++.+.|++++..||+|.|+.|.++.|..++++.+|++|.++.+.
T Consensus 29 ~~~~m~I~Vk~~g~~~~l~v~~~~TV~~LK~~I~~~~gip~~~QrLi~~Gk~L~D~~tL~dygI~~gstI~lv~~~ 104 (125)
T 1j8c_A 29 EPKIIKVTVKTPKEKEEFAVPENSSVQQFKEAISKRFKSQTDQLVLIFAGKILKDQDTLIQHGIHDGLTVHLVIKR 104 (125)
T ss_dssp CCCCEEEEEECSSCEEEEEECTTCCHHHHHHHHHHHHCSCSSSEEEEETTEEESTTSCGGGTTCSSSEEEEEEEC-
T ss_pred CCCcEEEEEEeCCeEEEEEECCCCcHHHHHHHHHHHHCcCcceEEEEECCEEcCCCCCHHHcCCCCCCEEEEEecc
Confidence 3567889998874457899999999999999999999999999999999999999999999999999999998754
No 44
>1sif_A Ubiquitin; hydrophobic mutants, folding, stability, structural protein; 2.18A {Homo sapiens} SCOP: d.15.1.1
Probab=98.55 E-value=2.9e-07 Score=67.53 Aligned_cols=72 Identities=14% Similarity=0.217 Sum_probs=64.4
Q ss_pred EEEEEEeCCce-EEEEEcCCChHHHHHHHHHHHcCCCCCceEEEECCcccCCCCCcccCCCCCCcEEEEEecc
Q 027553 150 IVVSIQDKGGL-KQFRVYADDKFERLFKMYADKVNLDQENLVFCFDGDKIGPEATPASLEMEDNDIIEVHTKK 221 (222)
Q Consensus 150 ItIkV~~qdg~-v~FkIk~tT~L~KLf~aYaer~gl~~~~lrF~FDG~rI~~~~TP~sLgMEDGDiIDV~ikQ 221 (222)
+.|.|...+|. +.+.|.+++++..|...++++.|++++..|++|+|+.|.++.|..++++.+|++|.+..+.
T Consensus 10 ~~i~v~~~~G~~~~l~v~~~~TV~~LK~~I~~~~gip~~~qrL~~~Gk~L~D~~tL~~~gi~~g~~i~l~~r~ 82 (88)
T 1sif_A 10 LQLFIKTLTGKTFTVEMEPSDTIENLKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRL 82 (88)
T ss_dssp CEEEEEETTSCEEEEECCTTSBHHHHHHHHHHHHCCCGGGCEEEETTEECCTTSBSGGGTCCTTCEEEEEC--
T ss_pred eEEEEEeCCCCEEEEEECCCChHHHHHHHHHHHHCcChhhEEEEECCEECCCCCcHHHcCCCCCCEEEEEEeC
Confidence 45667766765 7899999999999999999999999999999999999999999999999999999998764
No 45
>2klc_A Ubiquilin-1; ubiquitin-like, structural genomics, PSI-2, protein structur initiative, northeast structural genomics consortium, NESG; NMR {Homo sapiens}
Probab=98.54 E-value=6.8e-07 Score=67.55 Aligned_cols=75 Identities=13% Similarity=0.236 Sum_probs=67.9
Q ss_pred CCcEEEEEEeCCceEEEEEcCCChHHHHHHHHHHHcCCCCCceEEEECCcccCCCCCcccCCCCCCcEEEEEecc
Q 027553 147 RAKIVVSIQDKGGLKQFRVYADDKFERLFKMYADKVNLDQENLVFCFDGDKIGPEATPASLEMEDNDIIEVHTKK 221 (222)
Q Consensus 147 ~~kItIkV~~qdg~v~FkIk~tT~L~KLf~aYaer~gl~~~~lrF~FDG~rI~~~~TP~sLgMEDGDiIDV~ikQ 221 (222)
...+.|.|...+..+.+.|.+++++..|....+.+.|++++..||+|.|+.|.++.|-.++|+.+|++|.+....
T Consensus 23 ~~~m~I~Vk~~g~~~~l~v~~~~TV~~LK~~I~~~~gip~~~qrLi~~Gk~L~D~~tL~~~gI~~g~~I~l~~~~ 97 (101)
T 2klc_A 23 PKIMKVTVKTPKEKEEFAVPENSSVQQFKEEISKRFKSHTDQLVLIFAGKILKDQDTLSQHGIHDGLTVHLVIKT 97 (101)
T ss_dssp CCCEEEEEECSSCEEEEEECSCCCHHHHHHHHHHHHTCCGGGEEEEETTEEECTTCCTGGGTCCTTCEEEEEECC
T ss_pred CCeEEEEEEeCCcEEEEEECCCCCHHHHHHHHHHHHCcChhhEEEEECCEECCCcCcHHHcCCCCCCEEEEEEcC
Confidence 456888888774457899999999999999999999999999999999999999999999999999999998754
No 46
>1yqb_A Ubiquilin 3; structural genomics consortium, ubiquitin, ubiquitin-like domain, structural genomics, signaling protein SGC; 2.00A {Homo sapiens} SCOP: d.15.1.1
Probab=98.53 E-value=5.7e-07 Score=67.99 Aligned_cols=76 Identities=16% Similarity=0.237 Sum_probs=70.1
Q ss_pred CCCcEEEEEEeCCceEEEEEcCCChHHHHHHHHHHHcCCCCCceEEEECCcccCCCCCcccCCCCCCcEEEEEecc
Q 027553 146 ERAKIVVSIQDKGGLKQFRVYADDKFERLFKMYADKVNLDQENLVFCFDGDKIGPEATPASLEMEDNDIIEVHTKK 221 (222)
Q Consensus 146 ~~~kItIkV~~qdg~v~FkIk~tT~L~KLf~aYaer~gl~~~~lrF~FDG~rI~~~~TP~sLgMEDGDiIDV~ikQ 221 (222)
....+.|.|+..++...+.|.+++++..|....+++.|++++..||+|.|+.|.++.|-.++++.+|++|.+..+.
T Consensus 19 ~~~~m~I~Vk~~~g~~~l~v~~~~TV~~LK~~I~~~~gip~~~QrLi~~Gk~L~D~~tL~~ygI~~gstI~l~~r~ 94 (100)
T 1yqb_A 19 SPHLIKVTVKTPKDKEDFSVTDTCTIQQLKEEISQRFKAHPDQLVLIFAGKILKDPDSLAQCGVRDGLTVHLVIKR 94 (100)
T ss_dssp CTTEEEEEEECSSCEEEEEEETTCBHHHHHHHHHHHHTCCGGGEEEEETTEECCTTSBHHHHTCCTTCEEEEEECC
T ss_pred CCCeEEEEEEcCCCcEEEEECCCCcHHHHHHHHHHHHCcChhhEEEEECCEECCCcCcHHHCCCCCCCEEEEEEcC
Confidence 4567899999888777899999999999999999999999999999999999999999999999999999998764
No 47
>4fbj_B NEDD8; effector-HOST target complex, glutamine deamidase, deamidati bacterial effector, cell cycle-protein binding complex; 1.60A {Homo sapiens} PDB: 4f8c_B
Probab=98.52 E-value=4.8e-07 Score=66.35 Aligned_cols=71 Identities=14% Similarity=0.291 Sum_probs=64.7
Q ss_pred EEEEEeCCce-EEEEEcCCChHHHHHHHHHHHcCCCCCceEEEECCcccCCCCCcccCCCCCCcEEEEEecc
Q 027553 151 VVSIQDKGGL-KQFRVYADDKFERLFKMYADKVNLDQENLVFCFDGDKIGPEATPASLEMEDNDIIEVHTKK 221 (222)
Q Consensus 151 tIkV~~qdg~-v~FkIk~tT~L~KLf~aYaer~gl~~~~lrF~FDG~rI~~~~TP~sLgMEDGDiIDV~ikQ 221 (222)
.|.|+..+|. +.+.|.++++...|....+++.|++++..|++|.|+.+.++.|..++++++|++|.+.++.
T Consensus 2 ~I~Vk~~~g~~~~l~v~~~~TV~~LK~~I~~~~gip~~~qrLi~~Gk~L~D~~tL~~~~i~~g~~l~l~~rl 73 (88)
T 4fbj_B 2 LIKVKTLTGKEIEIDIEPTDKVERIKERVEEKEGIPPQQQRLIYSGKQMNDEKTAADYKILGGSVLHLVLAL 73 (88)
T ss_dssp EEEEEETTCCEEEEECCTTCBHHHHHHHHHHHHCCCGGGCEEEETTEECCTTSBTTTTTCCTTCEEEEECBC
T ss_pred EEEEEcCCCCEEEEEECCCCCHHHHHHHHHHHHCcChhHEEEEECCeECCCCCcHHHcCCCCCCEEEEEEEC
Confidence 4667766665 7899999999999999999999999999999999999999999999999999999998754
No 48
>2wyq_A HHR23A, UV excision repair protein RAD23 homolog A; DNA binding protein, DNA excision repair, proteasomal degrad polyubiquitin; 1.65A {Homo sapiens} PDB: 1p98_A 1p9d_U 1p1a_A
Probab=98.51 E-value=9.6e-07 Score=63.16 Aligned_cols=74 Identities=8% Similarity=0.190 Sum_probs=66.2
Q ss_pred CcEEEEEEeCCce-EEEEEcCCChHHHHHHHHHHH---cCCCCCceEEEECCcccCCCCCcccCCCCCCcEEEEEecc
Q 027553 148 AKIVVSIQDKGGL-KQFRVYADDKFERLFKMYADK---VNLDQENLVFCFDGDKIGPEATPASLEMEDNDIIEVHTKK 221 (222)
Q Consensus 148 ~kItIkV~~qdg~-v~FkIk~tT~L~KLf~aYaer---~gl~~~~lrF~FDG~rI~~~~TP~sLgMEDGDiIDV~ikQ 221 (222)
..+.|.|+..+|. +.+.|..+++...|....+++ .|++++..|++|.|+.+.++.|-.++++.+|++|.++.+.
T Consensus 4 ~~m~i~vk~~~g~~~~~~v~~~~TV~~lK~~i~~~~~~~gip~~~qrLi~~Gk~L~D~~tL~~~~i~~g~~i~l~~~~ 81 (85)
T 2wyq_A 4 MAVTITLKTLQQQTFKIRMEPDETVKVLKEKIEAEKGRDAFPVAGQKLIYAGKILSDDVPIRDYRIDEKNFVVVMVTK 81 (85)
T ss_dssp CCEEEEEEETTSCEEEEEECTTSBHHHHHHHHHHHHCTTTCCGGGEEEEETTEECCTTSBGGGGCCCTTSEEEEEEC-
T ss_pred ceEEEEEEECCCCEEEEEECCCCCHHHHHHHHHhhccccCCCHHHeEEEECCEECcCCCCHHHcCCCCCCEEEEEEcC
Confidence 4578888887665 789999999999999999998 7899999999999999999999999999999999998754
No 49
>2l7r_A Ubiquitin-like protein FUBI; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium, NESG; NMR {Homo sapiens}
Probab=98.47 E-value=3.8e-07 Score=67.77 Aligned_cols=74 Identities=19% Similarity=0.251 Sum_probs=65.1
Q ss_pred CCcEEEEEEeCCceEEEEEcCCChHHHHHHHHHHHcCCCCCceEEEECCcccCCCCCcccCCCCCCcEEEEEecc
Q 027553 147 RAKIVVSIQDKGGLKQFRVYADDKFERLFKMYADKVNLDQENLVFCFDGDKIGPEATPASLEMEDNDIIEVHTKK 221 (222)
Q Consensus 147 ~~kItIkV~~qdg~v~FkIk~tT~L~KLf~aYaer~gl~~~~lrF~FDG~rI~~~~TP~sLgMEDGDiIDV~ikQ 221 (222)
...+.|.|+. +..+.+.|.++++...|...++++.|++++..||+|.|+.|.++.|..++++.+|++|.+.+..
T Consensus 17 ~~~m~I~Vk~-g~~~~l~v~~~~TV~~LK~~I~~~~gip~~~qrLi~~Gk~L~D~~tL~~y~I~~gstI~lv~rl 90 (93)
T 2l7r_A 17 RGSMQLFVRA-QELHTFEVTGQETVAQIKAHVASLEGIAPEDQVVLLAGAPLEDEATLGQCGVEALTTLEVAGRM 90 (93)
T ss_dssp ---CEEEEES-SSEEEEECCSSCBHHHHHHHHHHHHTCCGGGCEEEETTEECCTTSBHHHHTCCSSCEEEEECCC
T ss_pred CCcEEEEEEC-CCEEEEEeCCCCcHHHHHHHHHHHhCcChhHEEEEECCEECCCCCcHHHCCCCCCCEEEEEEec
Confidence 3457777776 4457899999999999999999999999999999999999999999999999999999998764
No 50
>3b08_A Polyubiquitin-C, ubiquitin; protein complex, signaling protein-metal binding protein COM; HET: TRE; 1.70A {Homo sapiens} PDB: 2w9n_A* 3b0a_A* 3axc_A 2zvn_A 2zvo_A 2y5b_B
Probab=98.46 E-value=1.2e-06 Score=68.29 Aligned_cols=73 Identities=12% Similarity=0.221 Sum_probs=66.7
Q ss_pred cEEEEEEeCCce-EEEEEcCCChHHHHHHHHHHHcCCCCCceEEEECCcccCCCCCcccCCCCCCcEEEEEecc
Q 027553 149 KIVVSIQDKGGL-KQFRVYADDKFERLFKMYADKVNLDQENLVFCFDGDKIGPEATPASLEMEDNDIIEVHTKK 221 (222)
Q Consensus 149 kItIkV~~qdg~-v~FkIk~tT~L~KLf~aYaer~gl~~~~lrF~FDG~rI~~~~TP~sLgMEDGDiIDV~ikQ 221 (222)
.+.|.|...+|. +.+.+.++++...|...++.+.|++++..+|+|+|+.+.++.|..++++.+|++|.++.++
T Consensus 76 ~~~i~Vk~~~g~~~~~~v~~~~tv~~lK~~i~~~~gi~~~~qrL~~~g~~L~d~~tL~~~~i~~~~~i~l~~r~ 149 (152)
T 3b08_A 76 GMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRL 149 (152)
T ss_dssp CEEEEEEESSSCEEEEEECTTCBHHHHHHHHHHHHCCCGGGEEEEETTEECCTTSBTGGGTCCTTCEEEEEECC
T ss_pred ccceeeeecCCCEEEEEeCCCCcHHHHHHHHHHHhCcChhhEEEEECCEECCCCCCHHHcCCCCCCEEEEEEec
Confidence 466777776664 7899999999999999999999999999999999999999999999999999999998875
No 51
>4eew_A Large proline-rich protein BAG6; ubiquitin-like fold, GP78-binding, chaperone; 1.30A {Homo sapiens}
Probab=98.46 E-value=1.1e-06 Score=63.58 Aligned_cols=73 Identities=14% Similarity=0.214 Sum_probs=66.0
Q ss_pred CCCcEEEEEEeCCce-EEEEEcCCChHHHHHHHHHHHcCCCCCceEEEECCcccCCCCCcccCCCCCCcEEEEEe
Q 027553 146 ERAKIVVSIQDKGGL-KQFRVYADDKFERLFKMYADKVNLDQENLVFCFDGDKIGPEATPASLEMEDNDIIEVHT 219 (222)
Q Consensus 146 ~~~kItIkV~~qdg~-v~FkIk~tT~L~KLf~aYaer~gl~~~~lrF~FDG~rI~~~~TP~sLgMEDGDiIDV~i 219 (222)
....+.|.|+..+|. +.+.|.++++...|....+++.|+++...|++|.|+.+.++.|-.++++ +|++|.+..
T Consensus 14 ~~~~m~i~Vk~~~g~~~~~~v~~~~tV~~lK~~i~~~~gip~~~qrLi~~Gk~L~D~~tL~~~~i-~g~~i~lv~ 87 (88)
T 4eew_A 14 EPDSLEVLVKTLDSQTRTFIVGAQMNVKEFKEHIAASVSIPSEKQRLIYQGRVLQDDKKLQEYNV-GGKVIHLVE 87 (88)
T ss_dssp -CCEEEEEEEETTSCEEEEEEETTCBHHHHHHHHHHHHTCCGGGEEEEETTEECCTTSBGGGGTC-TTEEEEEEE
T ss_pred CCCeEEEEEEcCCCCEEEEEECCCCCHHHHHHHHHHHhCCCHHHEEEEECCEECCCCCcHHHcCC-CCcEEEEEE
Confidence 345688999887765 6899999999999999999999999999999999999999999999999 899998875
No 52
>3m62_B UV excision repair protein RAD23; armadillo-like repeats, UBL conjugation pathway, DNA damage, nucleus, phosphoprotein; HET: 1PE; 2.40A {Saccharomyces cerevisiae}
Probab=98.43 E-value=5.2e-07 Score=68.73 Aligned_cols=72 Identities=7% Similarity=0.163 Sum_probs=64.8
Q ss_pred EEEEEEeCCce-EEEEEcCCChHHHHHHHHHHHcCCCCCceEEEECCcccCCCCCcccCCCCCCcEEEEEecc
Q 027553 150 IVVSIQDKGGL-KQFRVYADDKFERLFKMYADKVNLDQENLVFCFDGDKIGPEATPASLEMEDNDIIEVHTKK 221 (222)
Q Consensus 150 ItIkV~~qdg~-v~FkIk~tT~L~KLf~aYaer~gl~~~~lrF~FDG~rI~~~~TP~sLgMEDGDiIDV~ikQ 221 (222)
+.|.|+..+|. +.+.|..+++...|....+.+.|+++...|++|.|+.|.++.|-.++|+.+|++|.+++.+
T Consensus 2 m~I~Vk~~~g~~~~l~v~~~~TV~~LK~~I~~~~gip~~~QrLi~~Gk~L~D~~tL~~~~i~~g~~i~lv~~~ 74 (106)
T 3m62_B 2 VSLTFKNFKKEKVPLDLEPSNTILETKTKLAQSISCEESQIKLIYSGKVLQDSKTVSECGLKDGDQVVFMVSQ 74 (106)
T ss_dssp -CEEEECTTCCEEEECCCTTSBHHHHHHHHHHTTTSCGGGCEEEETTEECCTTSBTTTTTCCTTCEEEEECCC
T ss_pred EEEEEEeCCCCEEEEEECCCCcHHHHHHHHHHHHCCChhhEEEEECCEECCCcCCHHHcCCCCCCEEEEEEcC
Confidence 45677765654 7899999999999999999999999999999999999999999999999999999998764
No 53
>3plu_A Ubiquitin-like modifier HUB1; ubiquitin-like, HUB-1, SNU66, peptide binding protein; 1.40A {Saccharomyces cerevisiae} PDB: 3plv_A 1m94_A 1p0r_A
Probab=98.40 E-value=1.6e-06 Score=66.35 Aligned_cols=74 Identities=15% Similarity=0.225 Sum_probs=68.2
Q ss_pred CCCcEEEEEEeCCce-EEEEEcCCChHHHHHHHHHHHcCCCCCceEEEECCcccCCCCCcccCCCCCCcEEEEEe
Q 027553 146 ERAKIVVSIQDKGGL-KQFRVYADDKFERLFKMYADKVNLDQENLVFCFDGDKIGPEATPASLEMEDNDIIEVHT 219 (222)
Q Consensus 146 ~~~kItIkV~~qdg~-v~FkIk~tT~L~KLf~aYaer~gl~~~~lrF~FDG~rI~~~~TP~sLgMEDGDiIDV~i 219 (222)
...-|.|.|....|. +.+.|.++++...|.+.-+++.|++++..|+.|.|+.+.++.|..++++.+|++|+.+.
T Consensus 18 ~~~mIqI~Vk~~~Gkk~~v~v~p~DTI~~LK~~I~~k~Gip~~qQrLif~Gk~LkD~~TL~dY~I~dgstLhL~~ 92 (93)
T 3plu_A 18 GSHMIEVVVNDRLGKKVRVKCLGEDSVGDFKKVLSLQIGTQPNKIVLQKGGSVLKDHISLEDYEVHDQTNLELYY 92 (93)
T ss_dssp --CEEEEEEECTTSCEEEEEEETTSBHHHHHHHHHHHHTCCGGGEEEEETTEECCTTSBTGGGTCCTTCEEEEEE
T ss_pred CCceEEEEEECCCCCEEEEEECCcCHHHHHHHHHHHHhCCCHHHEEEEeCCEEccCcCCHHHcCCCCCCEEEEEe
Confidence 467799999988876 79999999999999999999999999999999999999999999999999999999873
No 54
>1uel_A HHR23B, UV excision repair protein RAD23 homolog B; UBL, UIM, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=98.40 E-value=1.7e-06 Score=64.22 Aligned_cols=71 Identities=7% Similarity=0.177 Sum_probs=63.5
Q ss_pred EEEEEeCCce-EEEEEcCCChHHHHHHHHHHH---cCCCCCceEEEECCcccCCCCCcccCCCCCCcEEEEEecc
Q 027553 151 VVSIQDKGGL-KQFRVYADDKFERLFKMYADK---VNLDQENLVFCFDGDKIGPEATPASLEMEDNDIIEVHTKK 221 (222)
Q Consensus 151 tIkV~~qdg~-v~FkIk~tT~L~KLf~aYaer---~gl~~~~lrF~FDG~rI~~~~TP~sLgMEDGDiIDV~ikQ 221 (222)
.|.|+..+|. +.+.|..+++...|....+.+ .|++++..|++|.|+.|.++.|-.++|+.+|++|.++..+
T Consensus 2 ~I~Vk~~~g~~~~~~v~~~~TV~~LK~~I~~~~~~~gip~~~qrLi~~Gk~L~D~~tL~~ygI~~g~~i~l~~~~ 76 (95)
T 1uel_A 2 QVTLKTLQQQTFKIDIDPEETVKALKEKIESEKGKDAFPVAGQKLIYAGKILNDDTALKEYKIDEKNFVVVMVTK 76 (95)
T ss_dssp EEEEEETTCCEEEEECCTTSBHHHHHHHHHHHHCTTTCCTTTEEEEETTEECCTTSBGGGGTCCSSSEEEEEESS
T ss_pred EEEEEeCCCCEEEEEECCCCHHHHHHHHHHhhcccCCCChhhEEEEECCEECCCcCcHHHCCCCCCCEEEEEEeC
Confidence 5667766554 789999999999999999998 6899999999999999999999999999999999988753
No 55
>1wia_A Hypothetical ubiquitin-like protein (riken cDNA 2010008E23); 'structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.15.1.1
Probab=98.39 E-value=1.4e-06 Score=64.25 Aligned_cols=73 Identities=16% Similarity=0.204 Sum_probs=65.4
Q ss_pred CCCcEEEEEEeCCce-EEEEEcCCChHHHHHHHHHHHcCCCCCceEEEECCcccCCC-CCcccCCCCCCcEEEEEecc
Q 027553 146 ERAKIVVSIQDKGGL-KQFRVYADDKFERLFKMYADKVNLDQENLVFCFDGDKIGPE-ATPASLEMEDNDIIEVHTKK 221 (222)
Q Consensus 146 ~~~kItIkV~~qdg~-v~FkIk~tT~L~KLf~aYaer~gl~~~~lrF~FDG~rI~~~-~TP~sLgMEDGDiIDV~ikQ 221 (222)
+...|.|.|+..+|. +.+.|.+++++..|...++.+. +...||+|.|+.|.++ .|..++++.+|++|.++..+
T Consensus 4 ~~~~m~i~Vk~~~g~~~~~~v~~~~TV~~LK~~i~~~~---~~~qrLi~~Gk~L~D~~~tL~~y~i~~g~~i~l~~~~ 78 (95)
T 1wia_A 4 GSSGINVRLKFLNDTEELAVARPEDTVGTLKSKYFPGQ---ESQMKLIYQGRLLQDPARTLSSLNITNNCVIHCHRSP 78 (95)
T ss_dssp CCCSEEEEEEETTTEEEEEEECSSSBHHHHHHHHSSST---TTTCEEEETTEECCCSSCBTTTTTCCTTEEEEEECCC
T ss_pred CCCeEEEEEEeCCCCEEEEEECCCCcHHHHHHHHHhhC---cCcEEEEECCEEccCCcCCHHHcCCCCCCEEEEEECC
Confidence 356789999887765 7899999999999999999887 8999999999999998 99999999999999998764
No 56
>3m63_B Ubiquitin domain-containing protein DSK2; armadillo-like repeats, UBL conjugation pathway, nucleus, phosphoprotein; HET: 1PE; 2.40A {Saccharomyces cerevisiae}
Probab=98.36 E-value=3.5e-07 Score=69.41 Aligned_cols=76 Identities=9% Similarity=0.152 Sum_probs=65.1
Q ss_pred CCCcEEEEEEeCCceEEEEEcCCChHHHHHHHHHHHcCCCCCceEEEECCcccCCCCCcccCCCCCCcEEEEEecc
Q 027553 146 ERAKIVVSIQDKGGLKQFRVYADDKFERLFKMYADKVNLDQENLVFCFDGDKIGPEATPASLEMEDNDIIEVHTKK 221 (222)
Q Consensus 146 ~~~kItIkV~~qdg~v~FkIk~tT~L~KLf~aYaer~gl~~~~lrF~FDG~rI~~~~TP~sLgMEDGDiIDV~ikQ 221 (222)
+...|+|.|...+..+.+.|.++++...|....+++.|++++..|++|.|+.|..+.|..++|+++|++|.+..+.
T Consensus 25 ~~m~i~I~Vk~~g~~~~l~v~~~~TV~~LK~~I~~~~gip~~~QrLi~~Gk~L~D~~tL~~~gI~~g~tI~lv~~~ 100 (101)
T 3m63_B 25 GAMSLNIHIKSGQDKWEVNVAPESTVLQFKEAINKANGIPVANQRLIYSGKILKDDQTVESYHIQDGHSVHLVKSQ 100 (101)
T ss_dssp ----CCEEEECSSCCCCBCCCTTSBHHHHHHHHHHHHSCCSTTCCEEETTEECCTTSBTTTTTCCTTEEEEECCCC
T ss_pred CCcEEEEEEEECCEEEEEEeCCCCCHHHHHHHHHHHHCcChHHEEEEECCEECCCcCcHHHCCCCCCCEEEEEeCC
Confidence 4456788888733347899999999999999999999999999999999999999999999999999999988653
No 57
>3u30_A Ubiquitin, linear DI-ubiquitin; immune system; 2.43A {Homo sapiens}
Probab=98.31 E-value=4.4e-06 Score=67.68 Aligned_cols=75 Identities=12% Similarity=0.235 Sum_probs=68.5
Q ss_pred CCCcEEEEEEeCCce-EEEEEcCCChHHHHHHHHHHHcCCCCCceEEEECCcccCCCCCcccCCCCCCcEEEEEec
Q 027553 146 ERAKIVVSIQDKGGL-KQFRVYADDKFERLFKMYADKVNLDQENLVFCFDGDKIGPEATPASLEMEDNDIIEVHTK 220 (222)
Q Consensus 146 ~~~kItIkV~~qdg~-v~FkIk~tT~L~KLf~aYaer~gl~~~~lrF~FDG~rI~~~~TP~sLgMEDGDiIDV~ik 220 (222)
....+.|.|...+|. +.+.|.+++++..|....+.+.|+++...|++|.|..+.++.|..++++.+|++|.+.+.
T Consensus 17 ~~~~m~i~Vk~~~g~~~~l~v~~~~tV~~lK~~I~~~~gip~~~QrL~~~g~~L~d~~tL~~~~i~~~~~l~l~~~ 92 (172)
T 3u30_A 17 RGSHMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLR 92 (172)
T ss_dssp --CCEEEEEEETTTEEEEEEECTTCBHHHHHHHHHHHHCCCGGGEEEEETTEECCTTCBTGGGTCCTTCEEEEEEC
T ss_pred CCCcEEEEEEeCCCCEEEEEECCCCcHHHHHHHHHHHHCcChHHEEEEECCccccccCCHhHcCCcccceeeeeec
Confidence 567789999988876 789999999999999999999999999999999999999999999999999999998864
No 58
>2kan_A Uncharacterized protein AR3433A; ubiquitin fold, alpha+beta, structural genomics, protein structure initiative; NMR {Arabidopsis thaliana}
Probab=98.28 E-value=4.3e-06 Score=62.44 Aligned_cols=76 Identities=13% Similarity=0.084 Sum_probs=69.0
Q ss_pred CCCcEEEEEEeCCceEEEEEcCCChHHHHHHHHHHHcCCCCCceEEEECCcccCCC-CCcccCCCCCCcEEEEEecc
Q 027553 146 ERAKIVVSIQDKGGLKQFRVYADDKFERLFKMYADKVNLDQENLVFCFDGDKIGPE-ATPASLEMEDNDIIEVHTKK 221 (222)
Q Consensus 146 ~~~kItIkV~~qdg~v~FkIk~tT~L~KLf~aYaer~gl~~~~lrF~FDG~rI~~~-~TP~sLgMEDGDiIDV~ikQ 221 (222)
....|.|.|+..++.+.+.|.++++...|....+.+.|++++..|++|.|+.|.++ .|-.++++.+|++|.+..+.
T Consensus 12 ~~~~~~I~Vk~~~~~~~l~v~~~~TV~~LK~~I~~~~gip~~~QrLi~~Gk~L~D~~~tL~~ygI~~gstl~lv~r~ 88 (94)
T 2kan_A 12 AVRKIHVTVKFPSKQFTVEVDRTETVSSLKDKIHIVENTPIKRMQLYYSGIELADDYRNLNEYGITEFSEIVVFLKS 88 (94)
T ss_dssp SSCCEEEEEECSSCEEEEEECTTCBHHHHHHHHHHHSSSCTTTEEEEETTEEECCTTSBHHHHTCCTTEEEEEEECC
T ss_pred CCCCEEEEEEcCCcEEEEEECCCCcHHHHHHHHHHHHCcCHHHEEEEECCEECCCCcccHHHCCCCCCCEEEEEEeC
Confidence 34568888888777778999999999999999999999999999999999999988 89999999999999998753
No 59
>3rt3_B Ubiquitin-like protein ISG15; ubiquitin-like domain, isgylation, antiviral protein-viral P complex; 2.01A {Homo sapiens} PDB: 3sdl_C 3r66_C 3pse_B 1z2m_A
Probab=98.26 E-value=5.9e-06 Score=65.76 Aligned_cols=75 Identities=7% Similarity=0.178 Sum_probs=67.9
Q ss_pred CCcEEEEEEeCCce-EEEEEcCCChHHHHHHHHHHHcCCCCCceEEEECCcccCCCCCcccCCCCCCcEEEEEecc
Q 027553 147 RAKIVVSIQDKGGL-KQFRVYADDKFERLFKMYADKVNLDQENLVFCFDGDKIGPEATPASLEMEDNDIIEVHTKK 221 (222)
Q Consensus 147 ~~kItIkV~~qdg~-v~FkIk~tT~L~KLf~aYaer~gl~~~~lrF~FDG~rI~~~~TP~sLgMEDGDiIDV~ikQ 221 (222)
+..+.|.|...+|. +.+.|.++++...|....+.+.|++++..+++|+|+.+.++.|..++++.+|++|.+.++.
T Consensus 79 ~~~m~i~vk~~~g~~~~~~v~~~~tV~~lK~~i~~~~gip~~~q~L~~~G~~L~d~~tL~~y~i~~g~~l~l~~rl 154 (159)
T 3rt3_B 79 DEPLSILVRNNKGRSSTYEVRLTQTVAHLKQQVSGLEGVQDDLFWLTFEGKPLEDQLPLGEYGLKPLSTVFMNLRL 154 (159)
T ss_dssp CCCEEEEEECTTSCEEEEEECTTSBHHHHHHHHHHHHTCCGGGEEEEETTEECCTTSBGGGGTCCTTCEEEEEECC
T ss_pred CCcEEEEEECCCCCEEEEEeCCCCCHHHHHHHHHHHHCCCHHHEEEEECCeecCCCCCHHHcCCCCCCEEEEEEec
Confidence 44577778777765 7899999999999999999999999999999999999999999999999999999998753
No 60
>2daf_A FLJ35834 protein; hypothetical protein FLJ35834, ubiquitin-like domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.25 E-value=3.1e-06 Score=67.45 Aligned_cols=76 Identities=13% Similarity=0.155 Sum_probs=68.2
Q ss_pred CCCcEEEEEE-eCCc-eEEEEEcCCChHHHHHHHHHHHcCCCCCceEEEECCcccCCCCCcccCCCCCCcEEEEEecc
Q 027553 146 ERAKIVVSIQ-DKGG-LKQFRVYADDKFERLFKMYADKVNLDQENLVFCFDGDKIGPEATPASLEMEDNDIIEVHTKK 221 (222)
Q Consensus 146 ~~~kItIkV~-~qdg-~v~FkIk~tT~L~KLf~aYaer~gl~~~~lrF~FDG~rI~~~~TP~sLgMEDGDiIDV~ikQ 221 (222)
+...|+|+|. ..++ .+.+.+..++.+..|.+.++...+++.+.+|+.|.|+-|.+++|-.++|+.+|.+|.+.+.+
T Consensus 12 ~~~~itvkv~l~~~~~k~tv~v~~d~TV~dLKe~ls~~~~iP~e~qrLIy~GKiLKD~eTL~~~gIk~g~TIhLvi~s 89 (118)
T 2daf_A 12 EDSLATVKVVLIPVGQEIVIPFKVDTILKYLKDHFSHLLGIPHSVLQIRYSGKILKNNETLVQHGVKPQEIVQVEIFS 89 (118)
T ss_dssp CSSCEEEEEEETTTCCEEEEEECSSSCSHHHHHHHHHHHTCCTTTEEEEETTEEECSSCCHHHHSCCSSCEEEEEEEE
T ss_pred cCccEEEEEEEcCCCcEEEEEeCCCCcHHHHHHHHHhhhCCChHHEEEEECCeEcCCcchHHHcCCCCCCEEEEEEec
Confidence 4556888886 5555 47899999999999999999999999999999999999999999999999999999887654
No 61
>3b1l_X E3 ubiquitin-protein ligase parkin; proteasome, ALFA-beta-protein; 1.85A {Mus musculus} PDB: 1mg8_A 2zeq_A 2knb_A 1iyf_A
Probab=97.57 E-value=1.3e-07 Score=66.47 Aligned_cols=70 Identities=16% Similarity=0.271 Sum_probs=62.7
Q ss_pred EEEEEeCCce-EEEEEcCCChHHHHHHHHHHHcCCCCCceEEEECCcccCCCCCcccCCCCCCcEEEEEec
Q 027553 151 VVSIQDKGGL-KQFRVYADDKFERLFKMYADKVNLDQENLVFCFDGDKIGPEATPASLEMEDNDIIEVHTK 220 (222)
Q Consensus 151 tIkV~~qdg~-v~FkIk~tT~L~KLf~aYaer~gl~~~~lrF~FDG~rI~~~~TP~sLgMEDGDiIDV~ik 220 (222)
.|.|+..+|. +.+.|.++++...|....++..|++++..+|+|+|..+.++.|..++|+.+|++|.+++.
T Consensus 2 ~i~Vk~~~g~~~~~~v~~~~tV~~lK~~i~~~~gi~~~~qrL~~~gk~L~d~~tL~~~~i~~g~~i~l~~r 72 (76)
T 3b1l_X 2 IVFVRFNSSYGFPVEVDSDTSILQLKEVVAKQQGVPADQLRVIFAGKELPNHLTVQNCDLEQQSIVHIVQR 72 (76)
Confidence 3556665664 679999999999999999999999999999999999999999999999999999988764
No 62
>2kdi_A Ubiquitin, vacuolar protein sorting-associated protein 27 fusion protein; ubiquitin interacting motif, UIM, protein domain interface; NMR {Saccharomyces cerevisiae}
Probab=98.24 E-value=5.6e-06 Score=63.95 Aligned_cols=74 Identities=9% Similarity=0.190 Sum_probs=66.5
Q ss_pred CcEEEEEEeCCce-EEEEEcCCChHHHHHHHHHHHcCCCCCceEEEECCcccCCCCCcccCCCCCCcEEEEEecc
Q 027553 148 AKIVVSIQDKGGL-KQFRVYADDKFERLFKMYADKVNLDQENLVFCFDGDKIGPEATPASLEMEDNDIIEVHTKK 221 (222)
Q Consensus 148 ~kItIkV~~qdg~-v~FkIk~tT~L~KLf~aYaer~gl~~~~lrF~FDG~rI~~~~TP~sLgMEDGDiIDV~ikQ 221 (222)
.-..|.|..-+|. +.+.|.+++++..|....+++.|++++..|++|.|+.|.++.|..++++.+|++|.+..+.
T Consensus 8 ~~~~i~vk~l~G~~~~l~v~~~~TV~~LK~~I~~~~gip~~~qrLi~~Gk~L~D~~tL~~ygI~~gstI~l~~~~ 82 (114)
T 2kdi_A 8 GEFQIFAKTLTGKTITLEVESSDTIDNVKSKIQDKEGIPPDQQRLIWAGKQLEDGRTLSDYNIQRESTLHLVLRL 82 (114)
T ss_dssp CCCEEEEEETTCCEEEEECCTTCBHHHHHHHHHHHHCCCGGGEEEEETTEECCTTCBTTTTTCCSSCEEEEEECC
T ss_pred CcEEEEEEeCCCcEEEEEECCCCcHHHHHHHHHHHHCcChHHEEEEECCEECCCCCcHHHCCCCCCCEEEEEEEc
Confidence 3456777766665 6899999999999999999999999999999999999999999999999999999998764
No 63
>4a20_A Ubiquitin-like protein MDY2; protein binding, GET-pathway, tail-anchored proteins; 1.78A {Saccharomyces cerevisiae} PDB: 2lxc_A 4goc_A
Probab=98.24 E-value=5.6e-06 Score=63.05 Aligned_cols=76 Identities=11% Similarity=0.157 Sum_probs=65.2
Q ss_pred CCCcEEEEEEeCCce-EEE--EEcCCChHHHHHHHH-HHHcCCCCCceEEEECCcccCCCCCcccCCC-CCCcEEEEEec
Q 027553 146 ERAKIVVSIQDKGGL-KQF--RVYADDKFERLFKMY-ADKVNLDQENLVFCFDGDKIGPEATPASLEM-EDNDIIEVHTK 220 (222)
Q Consensus 146 ~~~kItIkV~~qdg~-v~F--kIk~tT~L~KLf~aY-aer~gl~~~~lrF~FDG~rI~~~~TP~sLgM-EDGDiIDV~ik 220 (222)
....|.|.|...+|. +.+ .+.++++...|.... ++..|+++...|++|.|+.|..+.|-.++++ .+|++|-++++
T Consensus 16 ~~~~m~I~VKtl~g~~~~i~v~v~~~~TV~~lK~~I~~~~~gip~~~QrLi~~Gk~L~D~~tL~dy~I~~~g~ti~lmvs 95 (98)
T 4a20_A 16 DNAAVHLTLKKIQAPKFSIEHDFSPSDTILQIKQHLISEEKASHISEIKLLLKGKVLHDNLFLSDLKVTPANSTITVMIK 95 (98)
T ss_dssp --CCEEEEEEECSSSCEEEEEEECTTCBHHHHHHHHHHTTSCSCGGGEEEEETTEEECTTCBGGGSCCBTTBCEEEEEEC
T ss_pred CCCCEEEEEEcCCCCEEEEEEecCCCChHHHHHHHHHHHhcCCChhhEEEEECCEECcCcCCHHHcCcCCCCCEEEEEEe
Confidence 455688888876664 444 566999999999998 7788999999999999999999999999999 99999999987
Q ss_pred c
Q 027553 221 K 221 (222)
Q Consensus 221 Q 221 (222)
+
T Consensus 96 k 96 (98)
T 4a20_A 96 P 96 (98)
T ss_dssp C
T ss_pred C
Confidence 6
No 64
>2kd0_A LRR repeats and ubiquitin-like domain-containing protein AT2G30105; ubiquitin-like protein, NESG, leucine-rich repeat, structural genomics; NMR {Arabidopsis thaliana}
Probab=98.23 E-value=1.2e-05 Score=58.74 Aligned_cols=73 Identities=12% Similarity=0.116 Sum_probs=63.8
Q ss_pred cEEEEEEeCCceEEEEEcCCChHHHHHHHHHHHcCCCCCceEEEECCcccCCCCCcccCCCCCCcEEEEEecc
Q 027553 149 KIVVSIQDKGGLKQFRVYADDKFERLFKMYADKVNLDQENLVFCFDGDKIGPEATPASLEMEDNDIIEVHTKK 221 (222)
Q Consensus 149 kItIkV~~qdg~v~FkIk~tT~L~KLf~aYaer~gl~~~~lrF~FDG~rI~~~~TP~sLgMEDGDiIDV~ikQ 221 (222)
.+.+.+.-.+..+.+.|.+++++..|....++..|+++...|++|.|+.+.++.|-.++++.+|++|.+..++
T Consensus 12 ~~~~~~~~~g~~~~l~v~~~~TV~~LK~~I~~~~gip~~~qrL~~~Gk~L~D~~tL~~~gi~~g~~l~l~~s~ 84 (85)
T 2kd0_A 12 TIKLTVKFGGKSIPLSVSPDCTVKDLKSQLQPITNVLPRGQKLIFKGKVLVETSTLKQSDVGSGAKLMLMASQ 84 (85)
T ss_dssp CEEEEEEETTEEEEEEECTTSBHHHHHHHHHHHHCCCTTTCEEEETTEECCTTCBTTTTTCCTTEEEEEECCC
T ss_pred cEEEEEEECCEEEEEEECCCCcHHHHHHHHHHHHCcChHHEEEEECCeECCCcCCHHHCCCCCCCEEEEEEeC
Confidence 4445444445457899999999999999999999999999999999999999999999999999999998754
No 65
>3b08_A Polyubiquitin-C, ubiquitin; protein complex, signaling protein-metal binding protein COM; HET: TRE; 1.70A {Homo sapiens} PDB: 2w9n_A* 3b0a_A* 3axc_A 2zvn_A 2zvo_A 2y5b_B
Probab=98.22 E-value=5.8e-06 Score=64.33 Aligned_cols=71 Identities=13% Similarity=0.221 Sum_probs=64.1
Q ss_pred EEEEEeCCce-EEEEEcCCChHHHHHHHHHHHcCCCCCceEEEECCcccCCCCCcccCCCCCCcEEEEEecc
Q 027553 151 VVSIQDKGGL-KQFRVYADDKFERLFKMYADKVNLDQENLVFCFDGDKIGPEATPASLEMEDNDIIEVHTKK 221 (222)
Q Consensus 151 tIkV~~qdg~-v~FkIk~tT~L~KLf~aYaer~gl~~~~lrF~FDG~rI~~~~TP~sLgMEDGDiIDV~ikQ 221 (222)
.|.|...+|. +.+.|.+++++..|....+++.|++++..+|+|.|+.+.++.|..++|+.+|++|.+...+
T Consensus 2 ~i~vk~~~g~~~~~~v~~~~tv~~lK~~i~~~~gip~~~q~L~~~g~~L~d~~tL~~~~i~~~~~l~l~~~~ 73 (152)
T 3b08_A 2 QIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRL 73 (152)
T ss_dssp EEEEEETTSCEEEEECCTTCBHHHHHHHHHHHHCCCGGGEEEEETTEECCTTSBTGGGTCCTTCEEEEEECC
T ss_pred EEEEEeCCCCEEEEEECCCCCHHHHHHHHHHHHCcChHHeEEEECCeECcCcccHHHhccCCCCeeEEEeec
Confidence 4667766664 7899999999999999999999999999999999999999999999999999999987653
No 66
>2kk8_A Uncharacterized protein AT4G05270; solution arabidopsis thaliana, uncharacterized putative protein, NESG, structural genomics; NMR {Arabidopsis thaliana}
Probab=98.20 E-value=5.9e-06 Score=60.52 Aligned_cols=74 Identities=9% Similarity=0.115 Sum_probs=67.1
Q ss_pred CCcEEEEEEeCCce-EEEEEcCCChHHHHHHHHHHHcCCCCCceEEEECCcc-cCCCCCcccCCCCCCcEEEEEec
Q 027553 147 RAKIVVSIQDKGGL-KQFRVYADDKFERLFKMYADKVNLDQENLVFCFDGDK-IGPEATPASLEMEDNDIIEVHTK 220 (222)
Q Consensus 147 ~~kItIkV~~qdg~-v~FkIk~tT~L~KLf~aYaer~gl~~~~lrF~FDG~r-I~~~~TP~sLgMEDGDiIDV~ik 220 (222)
..+.+|.|..-.|. +.+.|.++++...|....+++.|++++..|++|.|+. +.++.|-.++++.+|++|.+.++
T Consensus 8 ~~~~~i~vk~l~g~~~~l~v~~~~TV~~LK~~I~~~~gip~~~QrLi~~Gk~lL~D~~tL~~y~I~~gs~i~lv~~ 83 (84)
T 2kk8_A 8 HSHMKFLVENLNGSSFELEVDYRDTLLVVKQKIERSQHIPVSKQTLIVDGIVILREDLTVEQCQIVPTSDIQLEVS 83 (84)
T ss_dssp CCCEEEEEEETTSCEEEEEECTTSBHHHHHHHHHHHHTCCGGGEEEEETTEECCCSSSBHHHHTCCTTSCEEEEEC
T ss_pred cCceEEEEEecCCcEEEEEECCCChHHHHHHHHHHHHCcChHHEEEEECCEEecCCcCCHHHcCCCCCCEEEEEEc
Confidence 45677888777765 7899999999999999999999999999999999999 99999999999999999998764
No 67
>1we6_A Splicing factor, putative; structural genomics, ubiquitin-like domain, riken structural genomics/proteomics initiative, RSGI; NMR {Arabidopsis thaliana} SCOP: d.15.1.1
Probab=98.18 E-value=1e-05 Score=61.71 Aligned_cols=74 Identities=8% Similarity=0.171 Sum_probs=67.2
Q ss_pred CcEEEEEEeC---Cce-EEEEEcC-CChHHHHHHHHHHHcCCCCCceEEEECCcccCCCCCcccCCCCCCcEEEEEecc
Q 027553 148 AKIVVSIQDK---GGL-KQFRVYA-DDKFERLFKMYADKVNLDQENLVFCFDGDKIGPEATPASLEMEDNDIIEVHTKK 221 (222)
Q Consensus 148 ~kItIkV~~q---dg~-v~FkIk~-tT~L~KLf~aYaer~gl~~~~lrF~FDG~rI~~~~TP~sLgMEDGDiIDV~ikQ 221 (222)
..|+|.|+.. +|. +.+.|.+ +++...|....+...|++++..+++|.|..+.++.|-.++++.+|++|.+.++.
T Consensus 26 ~~i~i~Vk~~~~~~g~~~~l~v~~l~~TV~~LK~~I~~~~gip~~~QrL~~~Gk~L~D~~tL~~y~I~~g~~l~l~~r~ 104 (111)
T 1we6_A 26 GPATIRVSKPNENDGQFMEITVQSLSENVGSLKEKIAGEIQIPANKQKLSGKAGFLKDNMSLAHYNVGAGEILTLSLRE 104 (111)
T ss_dssp SCEEEEECCTTCSSSCCEEEEESCSSSBHHHHHHHHHHHTTCCTTTSEEECSSSBCCTTSBTTTTTCSSSCEEEEECSS
T ss_pred CcEEEEEEecccCCCcEEEEEecCCCCcHHHHHHHHHHHHCCCHHHeEEEECCEECCCCCcHHHCCCCCCCEEEEEEEc
Confidence 4588888876 554 7899998 999999999999999999999999999999999999999999999999998753
No 68
>1uh6_A Ubiquitin-like 5; beta-grAsp fold, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Mus musculus} SCOP: d.15.1.1
Probab=98.17 E-value=7.1e-06 Score=63.29 Aligned_cols=74 Identities=18% Similarity=0.135 Sum_probs=68.0
Q ss_pred CCCcEEEEEEeCCce-EEEEEcCCChHHHHHHHHHHHcCCCCCceEEEECCcccCCCCCcccCCCCCCcEEEEEe
Q 027553 146 ERAKIVVSIQDKGGL-KQFRVYADDKFERLFKMYADKVNLDQENLVFCFDGDKIGPEATPASLEMEDNDIIEVHT 219 (222)
Q Consensus 146 ~~~kItIkV~~qdg~-v~FkIk~tT~L~KLf~aYaer~gl~~~~lrF~FDG~rI~~~~TP~sLgMEDGDiIDV~i 219 (222)
+..-|.|.|....|. +.+.|.++++...|....+++.|++++..|++|.|+.|.++.|-.++++.+|.+|.++.
T Consensus 25 ~~~mm~I~VKtl~Gk~i~lev~p~dTV~~lK~~Ia~k~Gip~~qQrLi~~Gk~L~D~~TL~dygI~~gstlhL~~ 99 (100)
T 1uh6_A 25 AATMIEVVCNDRLGKKVRVKCNTDDTIGDLKKLIAAQTGTRWNKIVLKKWYTIFKDHVSLGDYEIHDGMNLELYY 99 (100)
T ss_dssp CCCEEEEEEECSSSSCEEEEEETTSBHHHHHHHHHHHHCCCGGGCEEEETTEECCSSCBHHHHTCCTTEEEEEEC
T ss_pred CCCeEEEEEECCCCCEEEEEeCCCCcHHHHHHHHHHHhCCCHHHEEEEECCEECCCCCCHHHcCCCCCCEEEEEe
Confidence 455699999987665 78999999999999999999999999999999999999999999999999999998764
No 69
>1we7_A SF3A1 protein; structural genomics, ubiquitin-like domain, riken structural genomics/proteomics initiative, RSGI, gene regulation; NMR {Mus musculus} SCOP: d.15.1.1 PDB: 1zkh_A
Probab=98.16 E-value=9.8e-06 Score=62.25 Aligned_cols=74 Identities=14% Similarity=0.184 Sum_probs=66.0
Q ss_pred CcEEEEEEeCC----------ce-EEEEEcCCChHHHHHHHHHHHcCCCCCceEEEECCcccCCCCCcccCCCCCCcEEE
Q 027553 148 AKIVVSIQDKG----------GL-KQFRVYADDKFERLFKMYADKVNLDQENLVFCFDGDKIGPEATPASLEMEDNDIIE 216 (222)
Q Consensus 148 ~kItIkV~~qd----------g~-v~FkIk~tT~L~KLf~aYaer~gl~~~~lrF~FDG~rI~~~~TP~sLgMEDGDiID 216 (222)
..|+|.|+..+ |. +.+.|.++++...|....+.+.|++++..|++|.|..+.++.|-.++++.+|++|.
T Consensus 24 ~~i~l~V~~p~~~~~~~~~L~G~~~~l~v~~~~TV~~LK~~I~~~~gip~~~QrL~~~Gk~L~D~~tL~~y~i~~g~~i~ 103 (115)
T 1we7_A 24 GPVSIKVQVPNMQDKTEWKLNGQGLVFTLPLTDQVSVIKVKIHEATGMPAGKQKLQYEGIFIKDSNSLAYYNMASGAVIH 103 (115)
T ss_dssp SCEEEEEEECCCSSSCSSCCSSEEEEEEECSCSBTHHHHHHHHHHSSCCTTTEEEEETTEEECTTSBHHHHTCCSSCEEE
T ss_pred CCEEEEEEcCCCccccccccCCeEEEEEECCCCCHHHHHHHHHHHHCCChHHEEEEECCEECCCCCCHHHCCCCCCCEEE
Confidence 35788887653 44 68999999999999999999999999999999999999999999999999999999
Q ss_pred EEecc
Q 027553 217 VHTKK 221 (222)
Q Consensus 217 V~ikQ 221 (222)
+.++.
T Consensus 104 lv~rl 108 (115)
T 1we7_A 104 LALKE 108 (115)
T ss_dssp EEECC
T ss_pred EEEEc
Confidence 98753
No 70
>3l0w_B Monoubiquitinated proliferating cell nuclear antigen, proliferating cell nuclear antigen; replication, DNA damage, DNA repair; 2.80A {Saccharomyces cerevisiae} PDB: 3l10_B
Probab=98.16 E-value=9.1e-06 Score=66.91 Aligned_cols=71 Identities=11% Similarity=0.223 Sum_probs=65.1
Q ss_pred EEEEEeCCce-EEEEEcCCChHHHHHHHHHHHcCCCCCceEEEECCcccCCCCCcccCCCCCCcEEEEEecc
Q 027553 151 VVSIQDKGGL-KQFRVYADDKFERLFKMYADKVNLDQENLVFCFDGDKIGPEATPASLEMEDNDIIEVHTKK 221 (222)
Q Consensus 151 tIkV~~qdg~-v~FkIk~tT~L~KLf~aYaer~gl~~~~lrF~FDG~rI~~~~TP~sLgMEDGDiIDV~ikQ 221 (222)
.|.|+..+|. +.+.|.++++...|....+++.|++++..|++|.|+.|.++.|..++++++|++|.++++.
T Consensus 2 qI~Vk~~~Gk~~~l~v~~~~TV~~LK~~I~~~~gip~~~QrLi~~Gk~L~D~~tL~~y~I~~gstI~Lvlrl 73 (169)
T 3l0w_B 2 QIFVKTLTGKTITLEVESSDTIDNVKSKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRL 73 (169)
T ss_dssp EEEEEETTSCEEEEECCTTCBHHHHHHHHHHHHCCCTTTEEEEETTEECCTTSBGGGGTCCTTCEEEEEECC
T ss_pred EEEEEeCCCCEEEEEeCCCCCHHHHHHHHHHHHCcCHHHEEEEECCccccCcCcHHHcCCCCCCEEEEEEEe
Confidence 4667777765 7899999999999999999999999999999999999999999999999999999998764
No 71
>1wxv_A BAG-family molecular chaperone regulator-1; structural genomics, apoptosis, riken structural genomics/proteomics initiative, RSGI, NPPSFA; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=98.13 E-value=1.3e-05 Score=58.80 Aligned_cols=75 Identities=13% Similarity=0.228 Sum_probs=65.5
Q ss_pred CCCcEEEEEEeCCceEEEEEcCC-----ChHHHHHHHHHHHcCCCCCceEEEECCcccCC-CCCcccCCCCCCcEEEEEe
Q 027553 146 ERAKIVVSIQDKGGLKQFRVYAD-----DKFERLFKMYADKVNLDQENLVFCFDGDKIGP-EATPASLEMEDNDIIEVHT 219 (222)
Q Consensus 146 ~~~kItIkV~~qdg~v~FkIk~t-----T~L~KLf~aYaer~gl~~~~lrF~FDG~rI~~-~~TP~sLgMEDGDiIDV~i 219 (222)
....|+|.|...+..+.+.|..+ .++..|....+++.|+++...|++|.|..|.+ +.|-.++++.+|++|.++.
T Consensus 4 ~~~~~~v~Vk~~~~~~~i~v~~~~~~~~~TV~~LK~~i~~~~gip~~~qrL~~~Gk~L~D~~~~L~~~~i~~g~~i~l~~ 83 (92)
T 1wxv_A 4 GSSGLTVTVTHSNEKHDLHVTSQQGSSEPVVQDLAQVVEEVIGVPQSFQKLIFKGKSLKEMETPLSALGIQDGCRVMLIG 83 (92)
T ss_dssp CCSSEEEEEECSSSEEEEEECCCSSSSSCBHHHHHHHHHHHTCCCTTTCEEEETTEEECCSSSBHHHHTCCSSEEEEEES
T ss_pred CCCeEEEEEEECCEEEEEEECCCcCcccCcHHHHHHHHHHHHCcCHHHEEEEECCeecCCCcccHHHCCCCCCCEEEEEe
Confidence 34568899987655578899995 99999999999999999999999999999987 4589999999999999876
Q ss_pred c
Q 027553 220 K 220 (222)
Q Consensus 220 k 220 (222)
.
T Consensus 84 ~ 84 (92)
T 1wxv_A 84 K 84 (92)
T ss_dssp C
T ss_pred c
Confidence 4
No 72
>1wgg_A Ubiquitin carboxyl-terminal hydrolase 14; ubiquitin specific protease 14, USP14, ubiquitin-like fold, structural genomics; NMR {Mus musculus} SCOP: d.15.1.1
Probab=98.10 E-value=1.4e-05 Score=59.91 Aligned_cols=74 Identities=5% Similarity=0.003 Sum_probs=65.6
Q ss_pred CCCcEEEEEEeCCceE-EEEEcCCChHHHHHHHHHHHcCCCCCceEEEECCcccCCCCCcccCCCCCCcEEEEEec
Q 027553 146 ERAKIVVSIQDKGGLK-QFRVYADDKFERLFKMYADKVNLDQENLVFCFDGDKIGPEATPASLEMEDNDIIEVHTK 220 (222)
Q Consensus 146 ~~~kItIkV~~qdg~v-~FkIk~tT~L~KLf~aYaer~gl~~~~lrF~FDG~rI~~~~TP~sLgMEDGDiIDV~ik 220 (222)
....|+|+|...+..+ .+.|..++++..|....+++.|+++...|++|.|..+.++ |-.++++.+|++|.++..
T Consensus 4 ~~~~m~i~Vk~~g~~~~~l~v~~~~TV~~lK~~I~~~tgip~~~QkLi~~Gk~L~D~-tL~~~~I~~g~~i~l~~~ 78 (96)
T 1wgg_A 4 GSSGYSVTVKWGKEKFEGVELNTDEPPMVFKAQLFALTGVQPARQKVMVKGGTLKDD-DWGNIKMKNGMTVLMMGS 78 (96)
T ss_dssp CCCEEEEEEEETTEEEEEEEEESSSCHHHHHHHHHHHTCCCTTTSCCEETTEECCSS-CCCSCCCCSSCEEECCCC
T ss_pred CCcEEEEEEEECCEEEEEEEECCCCcHHHHHHHHHHHHCcCHHHeEEEECCcCCCCC-CHHHCCCCCCCEEEEEec
Confidence 4567888888655556 5999999999999999999999999999999999999988 999999999999987654
No 73
>1x1m_A Ubiquitin-like protein SB132; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.15.1.1
Probab=98.06 E-value=1.3e-05 Score=60.99 Aligned_cols=74 Identities=11% Similarity=0.136 Sum_probs=62.2
Q ss_pred CcEEEEEEeCCc----eEEEE--------EcCC-ChHHHHHHHHHHHc--CCCCCc-eEEEECCcccCCCCCcccCCCCC
Q 027553 148 AKIVVSIQDKGG----LKQFR--------VYAD-DKFERLFKMYADKV--NLDQEN-LVFCFDGDKIGPEATPASLEMED 211 (222)
Q Consensus 148 ~kItIkV~~qdg----~v~Fk--------Ik~t-T~L~KLf~aYaer~--gl~~~~-lrF~FDG~rI~~~~TP~sLgMED 211 (222)
..|.|.|+..++ ...+. |.++ ++...|....+.+. |+++.. .||+|.|+.|.++.|..++++.+
T Consensus 11 ~~~~i~Vk~~~~~~~~~~~l~v~~~~~~~v~~~~~TV~~LK~~i~~~~~~gip~~~~qrLi~~Gk~L~D~~tL~~y~i~~ 90 (107)
T 1x1m_A 11 SDWHLAVKLADQPLAPKSILQLPETELGEYSLGGYSISFLKQLIAGKLQESVPDPELIDLIYCGRKLKDDQTLDFYGIQP 90 (107)
T ss_dssp CSCCEEEEETTCTTSCCEEECCCCCSSCSSCCCCCBHHHHHHHHHHHCTTTCCCSSSEEEEETTEECCTTCBHHHHTCCT
T ss_pred CceEEEEEeCCCCCccEEEEEecCccccccCcccCCHHHHHHHHHHHhccCCChhhcEEEEECCeECCCCCcHHHcCCCC
Confidence 345666665555 35677 4444 99999999999999 999999 99999999999999999999999
Q ss_pred CcEEEEEecc
Q 027553 212 NDIIEVHTKK 221 (222)
Q Consensus 212 GDiIDV~ikQ 221 (222)
|++|.++...
T Consensus 91 g~~i~lv~~~ 100 (107)
T 1x1m_A 91 GSTVHVLRKS 100 (107)
T ss_dssp TCEEEEEESS
T ss_pred CCEEEEEeCC
Confidence 9999998754
No 74
>1v86_A DNA segment, CHR 7, wayne state university 128, expressed; ubiquitin fold, structural genomics, D7WSU128E protein; HET: DNA; NMR {Mus musculus} SCOP: d.15.1.1
Probab=98.04 E-value=1.1e-05 Score=60.18 Aligned_cols=74 Identities=12% Similarity=0.030 Sum_probs=65.5
Q ss_pred CCCcEEEEEEeCCceEEEEEcCCChHHHHHHHHHHHcCCCCCceEEEECCcccCCCCCcccCCCCCCcEEEEEec
Q 027553 146 ERAKIVVSIQDKGGLKQFRVYADDKFERLFKMYADKVNLDQENLVFCFDGDKIGPEATPASLEMEDNDIIEVHTK 220 (222)
Q Consensus 146 ~~~kItIkV~~qdg~v~FkIk~tT~L~KLf~aYaer~gl~~~~lrF~FDG~rI~~~~TP~sLgMEDGDiIDV~ik 220 (222)
....|+|+|...+..+.+.|..++++..|....+.+.|+++...|++|.|..+ .+.|-.++++.+|++|.++..
T Consensus 14 ~~~~~~i~Vk~~g~~~~i~v~~~~TV~~LK~~I~~~tgip~~~QrL~~~Gk~L-dd~tL~~~~i~~g~~i~lv~~ 87 (95)
T 1v86_A 14 GKELVDLKIIWNKTKHDVKVPLDSTGSELKQKIHSITGLPPAMQKVMYKGLVP-EDKTLREIKVTSGAKIMVVGS 87 (95)
T ss_dssp CCCCEEEEEEETTEEEEEEECTTSBHHHHHHHHHHHHCSCSTTCCCBSSSBCC-SSSBHHHHCCCTTEEEEECCS
T ss_pred CCceEEEEEEECCEEEEEEECCCCcHHHHHHHHHHHHCcCHHHeEEEECCeeC-CcCcHHHCCCCCCCEEEEEec
Confidence 55778888886555578999999999999999999999999999999999999 556999999999999988754
No 75
>1wgd_A Homocysteine-responsive endoplasmic reticulum- resident ubiquitin-like domain member...; ENDPLASMIC reticulum stress, UBL domain; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=98.02 E-value=1.9e-05 Score=58.03 Aligned_cols=75 Identities=7% Similarity=0.050 Sum_probs=64.9
Q ss_pred CCcEEEEEEeCCce---EEEEEcCCChHHHHHHHHHHHc--CCCCCceEEEECCcccCCCCCcccC--CCCCCcEEEEEe
Q 027553 147 RAKIVVSIQDKGGL---KQFRVYADDKFERLFKMYADKV--NLDQENLVFCFDGDKIGPEATPASL--EMEDNDIIEVHT 219 (222)
Q Consensus 147 ~~kItIkV~~qdg~---v~FkIk~tT~L~KLf~aYaer~--gl~~~~lrF~FDG~rI~~~~TP~sL--gMEDGDiIDV~i 219 (222)
...|+|.|+..++. +.+.+.++++...|....+++. |++++..|++|.|+.|.++.|-.++ ++.+|.+|.+..
T Consensus 5 ~~~m~i~Vk~~~~~~~~~~v~v~~~~TV~~lK~~I~~~~~~~i~~~~QrLi~~Gk~L~D~~tL~~~~~~i~~~~~i~lv~ 84 (93)
T 1wgd_A 5 SSGVTLLVKSPNQRHRDLELSGDRGWSVGHLKAHLSRVYPERPRPEDQRLIYSGKLLLDHQCLRDLLPKQEKRHVLHLVC 84 (93)
T ss_dssp SCCCEEEEECSSSSCCCEEEECCTTSCHHHHHHHHHHHSTTCCCTTTCEEEETTEECCSSSCHHHHSCSSSCSEEEEEEC
T ss_pred CcEEEEEEEeCCCCeEEEEEecCCCCcHHHHHHHHHHHhcCCCChHHeEEEECCEECcCcCCHHHHhcCCCCCCEEEEEe
Confidence 44577888776654 4556669999999999999998 9999999999999999999999999 999999999876
Q ss_pred cc
Q 027553 220 KK 221 (222)
Q Consensus 220 kQ 221 (222)
+.
T Consensus 85 ~~ 86 (93)
T 1wgd_A 85 NV 86 (93)
T ss_dssp CC
T ss_pred CC
Confidence 53
No 76
>3q3f_A Ribonuclease/ubiquitin chimeric protein; domain SWAP, oligomerization, ubiquitin insertion, hydrolase binding; 2.17A {Bacillus amyloliquefaciens}
Probab=98.01 E-value=1.7e-05 Score=67.05 Aligned_cols=74 Identities=12% Similarity=0.177 Sum_probs=68.1
Q ss_pred CcEEEEEEeCCce-EEEEEcCCChHHHHHHHHHHHcCCCCCceEEEECCcccCCCCCcccCCCCCCcEEEEEecc
Q 027553 148 AKIVVSIQDKGGL-KQFRVYADDKFERLFKMYADKVNLDQENLVFCFDGDKIGPEATPASLEMEDNDIIEVHTKK 221 (222)
Q Consensus 148 ~kItIkV~~qdg~-v~FkIk~tT~L~KLf~aYaer~gl~~~~lrF~FDG~rI~~~~TP~sLgMEDGDiIDV~ikQ 221 (222)
-.+.|.|+..+|. +.+.|.++++...|....+++.|+++...+|+|.|+.|.++.|..++++++|++|.++++.
T Consensus 104 ~eMqI~VKtl~Gkt~~l~V~~s~TV~~LK~kI~~~~gIp~~~QrLi~~Gk~L~D~~tL~dygI~~gstI~Lvlrl 178 (189)
T 3q3f_A 104 YGGQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRL 178 (189)
T ss_dssp CCEEEEEECTTSCEEEEEECTTCBHHHHHHHHHHHHCCCGGGCCEEETTEECCTTCBGGGGTCCTTCEEEECCCC
T ss_pred cceeeeeecCCCCEEEEEeCCCCcHHHHHHHHHhccCCCHHHEEEEECCEECCCCCCHHHCCCCCCCEEEEEEEc
Confidence 3488899887775 7899999999999999999999999999999999999999999999999999999998753
No 77
>3u5e_m 60S ribosomal protein L40; translation, ribosome, ribosomal R ribosomal protein, STM1, eukaryotic ribosome; 3.00A {Saccharomyces cerevisiae} PDB: 3u5i_m 4b6a_m 4a18_K 4a19_K 4a1b_K 4a1d_K 4adx_5 3izc_p 3izs_p 3iz5_p 3izr_p
Probab=98.00 E-value=8.1e-07 Score=69.68 Aligned_cols=71 Identities=11% Similarity=0.223 Sum_probs=0.0
Q ss_pred EEEEEeCCce-EEEEEcCCChHHHHHHHHHHHcCCCCCceEEEECCcccCCCCCcccCCCCCCcEEEEEecc
Q 027553 151 VVSIQDKGGL-KQFRVYADDKFERLFKMYADKVNLDQENLVFCFDGDKIGPEATPASLEMEDNDIIEVHTKK 221 (222)
Q Consensus 151 tIkV~~qdg~-v~FkIk~tT~L~KLf~aYaer~gl~~~~lrF~FDG~rI~~~~TP~sLgMEDGDiIDV~ikQ 221 (222)
.|.|...+|. +.+.|.+++++..|....+++.|+++...+++|.|..|.++.|..++|+.+|++|.++++.
T Consensus 2 ~I~Vk~~~G~~~~l~v~~~~TV~~LK~~I~~~~gip~~~QrLi~~Gk~L~D~~tL~~~~I~~gsti~l~~rl 73 (128)
T 3u5e_m 2 QIFVKTLTGKTITLEVESSDTIDNVKSKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRL 73 (128)
T ss_dssp ------------------------------------------------------------------------
T ss_pred EEEEEeCCCCEEEEEeCCCCCHHHHHHHHHHHhCcChHHEEEEECCEECCCCCchhhhccCCCCEEEEEEEc
Confidence 4556665665 6899999999999999999999999999999999999999999999999999999988753
No 78
>1v5o_A 1700011N24RIK protein; hypothetical protein, ubiquitin-like fold, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.15.1.1
Probab=98.00 E-value=2.3e-05 Score=59.00 Aligned_cols=75 Identities=9% Similarity=0.146 Sum_probs=63.4
Q ss_pred CCcEEEEEEeCC-----ceEEEEEcCCChHHHHHHHHHHHcCCCCCceEEEECCcccCCC-CCcccCCCCCCcEEEEEec
Q 027553 147 RAKIVVSIQDKG-----GLKQFRVYADDKFERLFKMYADKVNLDQENLVFCFDGDKIGPE-ATPASLEMEDNDIIEVHTK 220 (222)
Q Consensus 147 ~~kItIkV~~qd-----g~v~FkIk~tT~L~KLf~aYaer~gl~~~~lrF~FDG~rI~~~-~TP~sLgMEDGDiIDV~ik 220 (222)
...+.|.|.... ..+.+.|..++++..|....+.+.|++++..+++|.|+.|.++ .|-.++++.+|++|.++.+
T Consensus 5 ~~~m~I~Vk~~~~~~~~~~~~i~v~~~~TV~~LK~~I~~~~gip~~~qrL~~~gk~L~D~~~tL~~ygI~~g~~l~l~~~ 84 (102)
T 1v5o_A 5 SSGMLITVYCVRRDLTEVTFSLQVNPDFELSNFRVLCELESGVPAEEAQIVYMEQLLTDDHCSLGSYGLKDGDMVVLLQK 84 (102)
T ss_dssp SCCEEEEEEECCCCCCCCEEEEEECTTCBHHHHHHHHHHHTCCCGGGBCEEETTEEECCSSSBHHHHTCCTTEEEEECBC
T ss_pred CCeEEEEEEECCCCcCceEEEEEcCCCCCHHHHHHHHHHHHCcChHHeEEEECCEECCCCcccHHHCCCCCCCEEEEEEC
Confidence 344666666532 2367999999999999999999999999999999999999877 6999999999999998865
Q ss_pred c
Q 027553 221 K 221 (222)
Q Consensus 221 Q 221 (222)
.
T Consensus 85 ~ 85 (102)
T 1v5o_A 85 D 85 (102)
T ss_dssp C
T ss_pred C
Confidence 4
No 79
>1v5t_A 8430435I17RIK protein; hypothetical protein, ubiquitin-like fold, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.15.1.1 PDB: 2kx3_A
Probab=97.94 E-value=2.3e-05 Score=57.74 Aligned_cols=74 Identities=12% Similarity=0.121 Sum_probs=64.0
Q ss_pred CCcEEEEEEeCCceEEE-EEcCCChHHHHHHHHHHHcCCCCCceEEE---ECCcccCCCCCcccCCCCCCcEEEEEec
Q 027553 147 RAKIVVSIQDKGGLKQF-RVYADDKFERLFKMYADKVNLDQENLVFC---FDGDKIGPEATPASLEMEDNDIIEVHTK 220 (222)
Q Consensus 147 ~~kItIkV~~qdg~v~F-kIk~tT~L~KLf~aYaer~gl~~~~lrF~---FDG~rI~~~~TP~sLgMEDGDiIDV~ik 220 (222)
...|+|+|...+..+.+ .|..++++..|....+++.|+++...|++ |.|..+.++.|-.++++.+|++|.++..
T Consensus 5 ~~~m~i~Vk~~g~~~~i~~v~~~~TV~~lK~~I~~~~gip~~~QkLi~~k~~Gk~L~D~~~L~~~~i~~g~~l~l~~~ 82 (90)
T 1v5t_A 5 SSGLPIIVKWGGQEYSVTTLSEDDTVLDLKQFLKTLTGVLPERQKLLGLKVKGKPAENDVKLGALKLKPNTKIMMMGT 82 (90)
T ss_dssp CCSCCEEEEETTEEEEECSCCSSSBHHHHHHHHHHHTCCCTTTCEEESCEETTEECCTTSBHHHHTCCTTEEEEEECC
T ss_pred CceEEEEEEECCEEEEEEEeCCCCCHHHHHHHHHHHHCcCHHHeEEEeeccCCcCcCCCCCHHHcCCCCCCEEEEEec
Confidence 34566666654445678 88999999999999999999999999999 9999999899999999999999988753
No 80
>1wju_A NEDD8 ultimate buster-1; ubiquitin-like domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, protein binding; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=97.92 E-value=4.1e-05 Score=59.02 Aligned_cols=74 Identities=8% Similarity=-0.014 Sum_probs=64.2
Q ss_pred CCCcEEEEEEeCC----ce-EEEEEcCCChHHHHHHHHHHHcCCCCCceEEEECCcccCCCCCcccCCCCCCcEEEEEe
Q 027553 146 ERAKIVVSIQDKG----GL-KQFRVYADDKFERLFKMYADKVNLDQENLVFCFDGDKIGPEATPASLEMEDNDIIEVHT 219 (222)
Q Consensus 146 ~~~kItIkV~~qd----g~-v~FkIk~tT~L~KLf~aYaer~gl~~~~lrF~FDG~rI~~~~TP~sLgMEDGDiIDV~i 219 (222)
...-.+|+|...+ +. +.+.|.++.+...|...-+++.|+++...|++|.|+.|.++.|-.++++.+|.+|.|+.
T Consensus 12 ~tg~ati~V~~~~~~~~~~~~~lev~~~~TV~~lK~kI~~k~gip~~qQrLI~~GKiL~D~~TL~~y~I~~gsti~vl~ 90 (100)
T 1wju_A 12 TTGIATIEVFLPPRLKKDRKNLLETRLHITGRELRSKIAETFGLQENYIKIVINKKQLQLGKTLEEQGVAHNVKAMVLE 90 (100)
T ss_dssp CCCEEEEEEECCTTTCCSSSEEEEEESSSBHHHHHHHHHHHTTCCSTTCEEEETTEECCTTSBHHHHTCCSSEEEEEEC
T ss_pred hcceEEEEEEecCCCCCCcEEEEEeCCcCHHHHHHHHHHHHHCcCHHHeEEEeCCeECCCCCcHHHcCCCCCCEEEEEE
Confidence 3444566666554 33 78999999999999999999999999999999999999999999999999999996654
No 81
>3u30_A Ubiquitin, linear DI-ubiquitin; immune system; 2.43A {Homo sapiens}
Probab=97.86 E-value=5.7e-05 Score=61.07 Aligned_cols=73 Identities=12% Similarity=0.233 Sum_probs=64.3
Q ss_pred CcEEEEEEeCCce-EEEEEcCCChHHHHHHHHHHHcCCCCCceEEEECCcccCCCCCcccCCCCCCcEEEEEec
Q 027553 148 AKIVVSIQDKGGL-KQFRVYADDKFERLFKMYADKVNLDQENLVFCFDGDKIGPEATPASLEMEDNDIIEVHTK 220 (222)
Q Consensus 148 ~kItIkV~~qdg~-v~FkIk~tT~L~KLf~aYaer~gl~~~~lrF~FDG~rI~~~~TP~sLgMEDGDiIDV~ik 220 (222)
..+.|.|...+|. +.+.|.++.+...|....+.+.|++++..+++|+|+.+.++.|-.++++.+|++|.+.++
T Consensus 95 gg~~i~Vk~~~g~~~~l~v~~~~tV~~lK~~I~~~~gip~~~q~L~~~g~~L~D~~tL~~y~i~~g~tl~l~~r 168 (172)
T 3u30_A 95 GGMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLR 168 (172)
T ss_dssp CCEEEEEEESSCCEEEEEECTTCBHHHHHHHHHHHHCCCGGGCCEEETTEECCTTSBSGGGTCCTTCEEEECC-
T ss_pred ccccceeecccCcceeEEecCCCCHHHHHHHHHHHhCCCceeEEEEECCccCCCCCcHHHhCCCCCCEEEEEEe
Confidence 3455666666665 789999999999999999999999999999999999999999999999999999998764
No 82
>1wf9_A NPL4 family protein; beta-grAsp fold like domain, hypothetical protein, structural genomics, NPPSFA; NMR {Arabidopsis thaliana} SCOP: d.15.1.1
Probab=97.85 E-value=4.5e-05 Score=58.12 Aligned_cols=75 Identities=12% Similarity=0.262 Sum_probs=65.7
Q ss_pred CCCcEEEEEEeCCceEEEEEc-CCChHHHHHHHHHHHcCCCCCceEEEECCc-----------c----cCCCCCcccCCC
Q 027553 146 ERAKIVVSIQDKGGLKQFRVY-ADDKFERLFKMYADKVNLDQENLVFCFDGD-----------K----IGPEATPASLEM 209 (222)
Q Consensus 146 ~~~kItIkV~~qdg~v~FkIk-~tT~L~KLf~aYaer~gl~~~~lrF~FDG~-----------r----I~~~~TP~sLgM 209 (222)
+...+.|+|++.+|...+.|. ++.++..|....+.+.|+++...++.|.|. . +.++.|-.++|+
T Consensus 4 ~~~~M~irvrs~~G~~~v~v~~~~~Tv~~LK~kI~~~~gip~~~QrL~~~~~~~~~k~~~~~~~l~~~l~d~~tL~~~gi 83 (107)
T 1wf9_A 4 GSSGTMLRVRSRDGLERVSVDGPHITVSQLKTLIQDQLQIPIHNQTLSTNRNLLLAKSPSDFLAFTDMADPNLRISSLNL 83 (107)
T ss_dssp SCCCEEEEEECSSCEEEEEECCTTSBHHHHHHHHHHHSCCCTTTCCCBSSGGGGTCCSHHHHTTCCSSCCTTCBGGGTCC
T ss_pred CCCeEEEEEECCCCCEEEEECCCCCcHHHHHHHHHHHhCcCcccCEEEECCccccccCccccccccccCCCCCCHHHCCC
Confidence 445588999999997678899 999999999999999999999999999988 4 367889999999
Q ss_pred CCCcEEEEEec
Q 027553 210 EDNDIIEVHTK 220 (222)
Q Consensus 210 EDGDiIDV~ik 220 (222)
.+|++|.+...
T Consensus 84 ~~G~~L~l~~~ 94 (107)
T 1wf9_A 84 AHGSMVYLAYE 94 (107)
T ss_dssp CTTCEEECCCS
T ss_pred CCCCEEEEEeC
Confidence 99999977643
No 83
>3u5c_f 40S ribosomal protein S31; translation, ribosome, ribosomal, ribosomal R ribosomal protein, eukaryotic ribosome, RNA-protein C; 3.00A {Saccharomyces cerevisiae} PDB: 3u5g_f
Probab=97.79 E-value=3e-06 Score=69.34 Aligned_cols=71 Identities=11% Similarity=0.223 Sum_probs=0.0
Q ss_pred EEEEEeCCce-EEEEEcCCChHHHHHHHHHHHcCCCCCceEEEECCcccCCCCCcccCCCCCCcEEEEEecc
Q 027553 151 VVSIQDKGGL-KQFRVYADDKFERLFKMYADKVNLDQENLVFCFDGDKIGPEATPASLEMEDNDIIEVHTKK 221 (222)
Q Consensus 151 tIkV~~qdg~-v~FkIk~tT~L~KLf~aYaer~gl~~~~lrF~FDG~rI~~~~TP~sLgMEDGDiIDV~ikQ 221 (222)
.|.|...+|. +.+.|.+++++..|....+++.|++++..+|+|.|..|.++.|..++++.+|++|.+++..
T Consensus 2 qI~VK~l~G~~~~l~V~~~~TV~~LK~~I~~~~gip~~~QrLi~~Gk~L~D~~tL~dygI~~gstL~Lvlrl 73 (152)
T 3u5c_f 2 QIFVKTLTGKTITLEVESSDTIDNVKSKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRL 73 (152)
T ss_dssp ------------------------------------------------------------------------
T ss_pred EEEEEeCCCCEEEEEECCCCCHHHHHHHHHHHhCCCHHHEEEEECCEEccccCcHHHcCCCCCCEEEEEeec
Confidence 4556655554 6899999999999999999999999999999999999999999999999999999988753
No 84
>1v6e_A Cytoskeleton-associated protein 1; tubulin-specific chaperone B, tubulin folding cofactor B, microtubule, ubiquitin-like fold, structural genomics; NMR {Mus musculus} SCOP: d.15.1.1
Probab=97.77 E-value=0.00014 Score=54.04 Aligned_cols=74 Identities=14% Similarity=-0.001 Sum_probs=64.4
Q ss_pred CCCcEEEEEEeCCc--eEEEEEcCCChHHHHHHHHHHHcCCCCCceEEEECC---cc----cCCCCCcccCCCCCCcEEE
Q 027553 146 ERAKIVVSIQDKGG--LKQFRVYADDKFERLFKMYADKVNLDQENLVFCFDG---DK----IGPEATPASLEMEDNDIIE 216 (222)
Q Consensus 146 ~~~kItIkV~~qdg--~v~FkIk~tT~L~KLf~aYaer~gl~~~~lrF~FDG---~r----I~~~~TP~sLgMEDGDiID 216 (222)
....|+|.|.+.+. .+.++|.++.+...|....+.+.|++++..|++|.| .. +.++.|-.++++++|++|.
T Consensus 4 ~~~~v~l~I~~~~~~~~~~~~v~~~~TV~~lK~ki~~~~gip~~~qrL~~~~~~g~~~~~l~~D~~tL~~y~i~~g~~l~ 83 (95)
T 1v6e_A 4 GSSGVMVFISSSLNSFRSEKRYSRSLTIAEFKCKLELVVGSPASCMELELYGADDKFYSKLDQEDALLGSYPVDDGCRIH 83 (95)
T ss_dssp CCCCEEEEEEETTSSSCEEEEECTTSBHHHHHHHHHHHTCSCTTTCBCEEECSSSCEEEECCCSSSBTTSSSCCTTCEEE
T ss_pred CCcEEEEEEEECCCCeeEEEEcCccCHHHHHHHHHHHHHCCCHHHeEEEEeCCCCccccccCCCcCCHhHCCCCCCCEEE
Confidence 34459999998776 478999999999999999999999999999999976 43 4688899999999999998
Q ss_pred EEe
Q 027553 217 VHT 219 (222)
Q Consensus 217 V~i 219 (222)
|.-
T Consensus 84 v~d 86 (95)
T 1v6e_A 84 VID 86 (95)
T ss_dssp EBC
T ss_pred EEE
Confidence 863
No 85
>4dbg_A Ranbp-type and C3HC4-type zinc finger-containing; ubiquitin fold, ubiquitination, ligase; 2.71A {Homo sapiens} PDB: 2lgy_A
Probab=97.77 E-value=0.00017 Score=55.97 Aligned_cols=74 Identities=14% Similarity=0.018 Sum_probs=62.8
Q ss_pred CCcEEEEEEeCC---ceEEEEEcCCChHHHHHHHHHHHcCCCCCceEEEECCcccCCCCCcccCCC-CCCcEEEEEec
Q 027553 147 RAKIVVSIQDKG---GLKQFRVYADDKFERLFKMYADKVNLDQENLVFCFDGDKIGPEATPASLEM-EDNDIIEVHTK 220 (222)
Q Consensus 147 ~~kItIkV~~qd---g~v~FkIk~tT~L~KLf~aYaer~gl~~~~lrF~FDG~rI~~~~TP~sLgM-EDGDiIDV~ik 220 (222)
.-.+.|.|.+.. +.+.+.|.++++...|.....++.|+++..-|+.|.|+.+.++.|-.++|+ ++|++|..++-
T Consensus 22 ~i~l~v~v~d~~s~~~~i~l~V~ps~TV~~LK~~I~~k~Gipp~~QRli~ggkll~D~~TL~~ygI~~~G~t~hL~l~ 99 (105)
T 4dbg_A 22 DIRLWVSVEDAQMHTVTIWLTVRPDMTVASLKDMVFLDYGFPPVLQQWVIGQRLARDQETLHSHGVRQNGDSAYLYLL 99 (105)
T ss_dssp CEEEEEEEEESSSCCEEEEEEECTTCBHHHHHHHHHHHHCCCGGGEEEEETTEEECTTCBTGGGTCCSTTCEEEEEEC
T ss_pred cEEEEEEEEccCCCCceEEEEECCcChHHHHHHHHHHHhCCCHHHEEEeccCeEccCcCcHHHcCCCCCCCEEEEEEE
Confidence 344555555544 347999999999999999999999999999999999998888999999999 69999988763
No 86
>3rt3_B Ubiquitin-like protein ISG15; ubiquitin-like domain, isgylation, antiviral protein-viral P complex; 2.01A {Homo sapiens} PDB: 3sdl_C 3r66_C 3pse_B 1z2m_A
Probab=97.76 E-value=0.00014 Score=57.75 Aligned_cols=71 Identities=10% Similarity=0.062 Sum_probs=64.6
Q ss_pred EEEEEEeCCce-EEEEEcCCChHHHHHHHHHHHcCCCCCceEEE-E-CCcccCCCCCcccCCCCCCcEEEEEec
Q 027553 150 IVVSIQDKGGL-KQFRVYADDKFERLFKMYADKVNLDQENLVFC-F-DGDKIGPEATPASLEMEDNDIIEVHTK 220 (222)
Q Consensus 150 ItIkV~~qdg~-v~FkIk~tT~L~KLf~aYaer~gl~~~~lrF~-F-DG~rI~~~~TP~sLgMEDGDiIDV~ik 220 (222)
+.|.|...+|. +.+.|.++++...|....+...|+++...|++ | .|..+.++.|-.++++.+|++|.+..+
T Consensus 3 m~i~vk~~~g~~~~l~v~~~~tV~~lK~~I~~~~gip~~~QrL~~~~~g~~L~d~~tL~~y~i~~~~~l~l~~~ 76 (159)
T 3rt3_B 3 WDLTVKMLAGNEFQVSLSSSMSVSELKAQITQKIGVHAFQQRLAVHPSGVALQDRVPLASQGLGPGSTVLLVVD 76 (159)
T ss_dssp CEEEEEETTSCEEEEECCTTCCHHHHHHHHHHHHCCCGGGEEEEEETTCCBCCTTSCGGGGTCCTTCEEEEEEC
T ss_pred eEEEEEECCCCEEEEEeCCCCcHHHHHHHHHHHhCCCHHHEEEEEcCCCCCCCCCCCHHHcCCCCCCEEEEEcc
Confidence 45677766665 78999999999999999999999999999999 9 799999999999999999999998876
No 87
>1v2y_A 3300001G02RIK protein; hypothetical protein, ubiquitin-like fold, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.15.1.1
Probab=97.73 E-value=3.7e-05 Score=59.52 Aligned_cols=76 Identities=16% Similarity=0.156 Sum_probs=65.6
Q ss_pred CCCCcEEEEEEeCCce-EEEEEcCCChHHHHHHHHHHHcCCCC---------------CceEEEECCcccC-CCCCcccC
Q 027553 145 IERAKIVVSIQDKGGL-KQFRVYADDKFERLFKMYADKVNLDQ---------------ENLVFCFDGDKIG-PEATPASL 207 (222)
Q Consensus 145 ~~~~kItIkV~~qdg~-v~FkIk~tT~L~KLf~aYaer~gl~~---------------~~lrF~FDG~rI~-~~~TP~sL 207 (222)
++...++|.|..-+|. +.+.|.++.+...|..+.+++.|+++ ..+++.|.|+.|. ++.|-.++
T Consensus 3 ~~~~~M~I~Vk~l~g~~~~v~V~~~~TV~dLK~~I~~~~~i~~~~q~g~~~isw~~~w~q~~Li~~Gk~L~dD~~tL~dy 82 (105)
T 1v2y_A 3 SGSSGMTVRVCKMDGEVMPVVVVQNATVLDLKKAIQRYVQLKQEREGGVQHISWSYVWRTYHLTSAGEKLTEDRKKLRDY 82 (105)
T ss_dssp CCCCSEEEEEECSSSCEEEEEECTTCBHHHHHHHHHHHHHHHHHHTTCCCCCCHHHHHTTEEEESSSCEECCSSSBHHHH
T ss_pred CCCCcEEEEEEecCCCEEEEEECCCChHHHHHHHHHHHhCCCcccccCcceeeeeecceeEEEEeCCcCccCCcCCHHHc
Confidence 3556789999877775 78999999999999999999998865 4789999999996 56899999
Q ss_pred CCCCCcEEEEEec
Q 027553 208 EMEDNDIIEVHTK 220 (222)
Q Consensus 208 gMEDGDiIDV~ik 220 (222)
|+.+|++|-+...
T Consensus 83 gI~~g~~l~lv~~ 95 (105)
T 1v2y_A 83 GIRNRDEVSFIKK 95 (105)
T ss_dssp TCCSSEEEEEEEC
T ss_pred CCCCCCEEEEEeh
Confidence 9999999987764
No 88
>2lxa_A Ubiquitin-like protein MDY2; ubiquitin-like domain, protein-protein interaction, SGT2 BIN domain, GET pathway, protein binding; NMR {Saccharomyces cerevisiae}
Probab=97.73 E-value=4.5e-05 Score=56.76 Aligned_cols=72 Identities=10% Similarity=0.132 Sum_probs=62.8
Q ss_pred EEEEEEeCCce-EEEEEc--CCChHHHHHHHH-HHHcCCCCCceEEEECCcccCCCCCcccCCC-CCCcEEEEEecc
Q 027553 150 IVVSIQDKGGL-KQFRVY--ADDKFERLFKMY-ADKVNLDQENLVFCFDGDKIGPEATPASLEM-EDNDIIEVHTKK 221 (222)
Q Consensus 150 ItIkV~~qdg~-v~FkIk--~tT~L~KLf~aY-aer~gl~~~~lrF~FDG~rI~~~~TP~sLgM-EDGDiIDV~ikQ 221 (222)
+.|.|....|. +.+.|. ++++...|.... +.+.|+++...|++|.|+.|.++.|-.++++ .+|.+|.|....
T Consensus 2 mqI~VKtl~g~~~~i~v~v~~~~TV~~lK~~I~~~~~gip~~~QrLi~~Gk~L~D~~tL~~y~I~~~~stl~v~~~~ 78 (87)
T 2lxa_A 2 VHLTLKKIQAPKFSIEHDFSPSDTILQIKQHLISEEKASHISEIKLLLKGKVLHDNLFLSDLKVTPANSTITVMIKP 78 (87)
T ss_dssp CEEEEEECSSSCEECCEECCTTCBHHHHHHHHHHTTSCSSSTTEEEEETTEECCTTCBHHHHCCCGGGCEEEEEECC
T ss_pred EEEEEEcCCCCEEEEEEcCCCCCcHHHHHHHHHHHhcCCChHHEEEEECCEECcCcCCHHHcCCCCCCCEEEEEcCC
Confidence 45677776665 666655 999999999998 8999999999999999999999999999999 799999998753
No 89
>2kzr_A Ubiquitin thioesterase OTU1; structural genomics, northeast structural genomics consortiu PSI-2, protein structure initiative, hydrolase; NMR {Mus musculus}
Probab=97.69 E-value=8.1e-05 Score=54.20 Aligned_cols=70 Identities=14% Similarity=0.221 Sum_probs=59.2
Q ss_pred EEEEEeCCceEEEE-EcCCChHHHHHHHHHHHcCCCCCceEEEEC--CcccC---CCCCcccCCCCCCcEEEEEec
Q 027553 151 VVSIQDKGGLKQFR-VYADDKFERLFKMYADKVNLDQENLVFCFD--GDKIG---PEATPASLEMEDNDIIEVHTK 220 (222)
Q Consensus 151 tIkV~~qdg~v~Fk-Ik~tT~L~KLf~aYaer~gl~~~~lrF~FD--G~rI~---~~~TP~sLgMEDGDiIDV~ik 220 (222)
.|+|+..+|...+. +..++++..|....+++.|+++...+|+|. |+.+. ++.|-.++|+.+|++|.|...
T Consensus 2 ~i~vr~~~G~~~v~~l~~~~Tv~~Lk~~I~~~~gi~~~~qrL~~~~p~k~l~l~~~~~tL~~~gl~~g~~l~v~~~ 77 (86)
T 2kzr_A 2 RVRCKAKGGTHLLQGLSSRTRLRELQGQIAAITGIAPGSQRILVGYPPECLDLSDRDITLGDLPIQSGDMLIVEED 77 (86)
T ss_dssp CEEEEETTEEEEECSCCTTCBHHHHHHHHHHHTCCCTTTCCCEESSCCCCCCCCCSSCBTTTSSCCTTCEEECCCC
T ss_pred EEEEEcCCCCEEeeecCCCCCHHHHHHHHHHHhCCCccceEEEeCCCCcccccCCCCCCHHHcCCCCCCEEEEEeC
Confidence 57888888875577 889999999999999999999888888875 47774 578999999999999887654
No 90
>2kjr_A CG11242; UBL, ubiquitin, ubiquitin-like, structural genomics, PSI-2, protein structure initiative; NMR {Drosophila melanogaster}
Probab=97.67 E-value=0.00022 Score=53.69 Aligned_cols=73 Identities=10% Similarity=-0.019 Sum_probs=63.8
Q ss_pred CCCcEEEEEEeCCc---eEEEEEcCCChHHHHHHHHHHHcCCCCCceEEEEC--Cc---cc-CCCCCcccCCCCCCcEEE
Q 027553 146 ERAKIVVSIQDKGG---LKQFRVYADDKFERLFKMYADKVNLDQENLVFCFD--GD---KI-GPEATPASLEMEDNDIIE 216 (222)
Q Consensus 146 ~~~kItIkV~~qdg---~v~FkIk~tT~L~KLf~aYaer~gl~~~~lrF~FD--G~---rI-~~~~TP~sLgMEDGDiID 216 (222)
+...|+|.|.+.++ .+.++|.++.+...|...-..+.|+++...|++|. |. .+ .++.|-.++++.+|++|.
T Consensus 12 ~~~~v~l~It~s~~~~~~~~~~v~~~~TV~~LK~kI~~~~GiP~~~QrL~~~~~g~~~~~L~~D~~tL~~Y~i~~gstih 91 (95)
T 2kjr_A 12 KSDFIKVNVSNSHNDAVAFEVKLAKDLTVAQLKTKLEILTGGCAGTMKVQVFKGDTCVSTMDNNDAQLGYYANSDGLRLH 91 (95)
T ss_dssp CCCEEEEEEEESSCSCEEEEEEEETTCBHHHHHHHHHHHHCSCTTTEEEEEEETTEEEEECCCTTSBHHHHCCSSSCEEE
T ss_pred CCCeEEEEEEECCCCceEEEEEeCccCHHHHHHHHHHHHHCcCHHHeEEEEecCCcccceeCCCCCCHhHCCcCCCCEEE
Confidence 46789999987665 37899999999999999999999999999999997 44 34 778899999999999997
Q ss_pred EE
Q 027553 217 VH 218 (222)
Q Consensus 217 V~ 218 (222)
+.
T Consensus 92 lv 93 (95)
T 2kjr_A 92 VV 93 (95)
T ss_dssp EE
T ss_pred EE
Confidence 75
No 91
>1t0y_A Tubulin folding cofactor B; ubiquitin-like, cytoskeleton, microtubule, CESG, structural genomics, protein structure initiative, PSI; NMR {Caenorhabditis elegans} SCOP: d.15.1.1
Probab=97.66 E-value=0.0003 Score=54.75 Aligned_cols=73 Identities=11% Similarity=-0.008 Sum_probs=63.9
Q ss_pred CCcEEEEEEeCCc--eEEEEEcCCChHHHHHHHHHHHcCCCCCceEEEECC---cc----cCCCCCcccCCCCCCcEEEE
Q 027553 147 RAKIVVSIQDKGG--LKQFRVYADDKFERLFKMYADKVNLDQENLVFCFDG---DK----IGPEATPASLEMEDNDIIEV 217 (222)
Q Consensus 147 ~~kItIkV~~qdg--~v~FkIk~tT~L~KLf~aYaer~gl~~~~lrF~FDG---~r----I~~~~TP~sLgMEDGDiIDV 217 (222)
...|+|.|.+.++ .+.++|.++.+...|....+.+.|++++..|+.|.| .. ..++.|-.++++++|.+|.|
T Consensus 4 ~~~v~l~V~~~~~~~~~e~~v~~~~TV~~lK~ki~~~~Gip~~~qrL~~~g~~~~~~~~l~~D~~tL~~y~i~~g~~ihv 83 (122)
T 1t0y_A 4 TEVYDLEITTNATDFPMEKKYPAGMSLNDLKKKLELVVGTTVDSMRIQLFDGDDQLKGELTDGAKSLKDLGVRDGYRIHA 83 (122)
T ss_dssp CCEEEEEEEESSCCSCEEEEEETTSBHHHHHHHHHHHHCCCTTTEEEEEECSSSSEEEECCCCSSBTTTTTCCSSEEEEE
T ss_pred CCEEEEEEEECCCCccEEEEeCCCCcHHHHHHHHHHHhCCCHHHeEEEEecCCCccccccCCCcCCHHHCCCCCCCEEEE
Confidence 3468999998776 478999999999999999999999999999999977 43 36788999999999999988
Q ss_pred Ee
Q 027553 218 HT 219 (222)
Q Consensus 218 ~i 219 (222)
..
T Consensus 84 vd 85 (122)
T 1t0y_A 84 VD 85 (122)
T ss_dssp EE
T ss_pred Ee
Confidence 64
No 92
>2kj6_A Tubulin folding cofactor B; methods development, NESG, solution PSI-2, structural genomics, protein structure initiative; NMR {Arabidopsis thaliana}
Probab=97.58 E-value=0.00029 Score=53.43 Aligned_cols=74 Identities=9% Similarity=0.003 Sum_probs=64.6
Q ss_pred CCCcEEEEEEeCCc---eEEEEEcCCChHHHHHHHHHHHcCCCCCceEEEECCc---c----cCCCCCcccCCCCCCcEE
Q 027553 146 ERAKIVVSIQDKGG---LKQFRVYADDKFERLFKMYADKVNLDQENLVFCFDGD---K----IGPEATPASLEMEDNDII 215 (222)
Q Consensus 146 ~~~kItIkV~~qdg---~v~FkIk~tT~L~KLf~aYaer~gl~~~~lrF~FDG~---r----I~~~~TP~sLgMEDGDiI 215 (222)
+...|+|.|.+... .+.++|.++.+...|...-..+.|+++...|+.|.|. . ..++.|-.++++++|++|
T Consensus 11 ~~~~v~l~It~s~~~~~~~e~~v~~~~TV~~LK~kIe~~~Gip~~~QrLi~~g~~g~~~~~L~~D~~tL~~Y~I~~g~~I 90 (97)
T 2kj6_A 11 GDDSVHLHITHANLKSFSADARFSPQMSVEAVKEKLWKKCGTSVNSMALELYDDSGSKVAVLSDDSRPLGFFSPFDGFRL 90 (97)
T ss_dssp CCCCEEEEEEETTSSCCCEEEEECTTCCHHHHHHHHHHHHCCCTTSEEEEEECSSSCBCCCSSGGGSCHHHHCCCSCCEE
T ss_pred CCceEEEEEEECCCCceEEEEEeCCCChHHHHHHHHHHHHCcCHHHeEEEEecCCCcccceecCCcCCHHHCCCCCCCEE
Confidence 57789999997654 3789999999999999999999999999999999883 3 367789999999999999
Q ss_pred EEEe
Q 027553 216 EVHT 219 (222)
Q Consensus 216 DV~i 219 (222)
.+.-
T Consensus 91 hlvd 94 (97)
T 2kj6_A 91 HIID 94 (97)
T ss_dssp EEEE
T ss_pred EEEe
Confidence 8763
No 93
>2fnj_B Transcription elongation factor B polypeptide 2; beta-sandwich, lectin-like, SPRY, protein transport/signaling protein complex; 1.80A {Mus musculus} SCOP: d.15.1.1 PDB: 1lm8_B 1lqb_A 1vcb_A 2c9w_B 2izv_B 2jz3_B 2xai_C 3dcg_A 3zrc_A* 3zrf_A
Probab=97.53 E-value=0.00032 Score=55.53 Aligned_cols=71 Identities=7% Similarity=0.013 Sum_probs=64.0
Q ss_pred EEEEEEeCCceEEEEEcCCChHHHHHHHHHHHcCCCCCceEEEECCcccCCCCCcccCCCC-------CCcEEEEEec
Q 027553 150 IVVSIQDKGGLKQFRVYADDKFERLFKMYADKVNLDQENLVFCFDGDKIGPEATPASLEME-------DNDIIEVHTK 220 (222)
Q Consensus 150 ItIkV~~qdg~v~FkIk~tT~L~KLf~aYaer~gl~~~~lrF~FDG~rI~~~~TP~sLgME-------DGDiIDV~ik 220 (222)
|.|+++.....+.+.|.++++...|....+.+.|+++...|++|+|+.|.++.|-.++|+. .+.+|.+..+
T Consensus 3 mfl~ir~~ktti~lev~~sdTV~~lK~kI~~~egIP~~qQrLi~~Gk~LeD~~TLsdy~I~~~~a~~q~~stL~L~lr 80 (118)
T 2fnj_B 3 VFLMIRRHKTTIFTDAKESSTVFELKRIVEGILKRPPEEQRLYKDDQLLDDGKTLGECGFTSQTARPQAPATVGLAFR 80 (118)
T ss_dssp EEEEEEEBTEEEEEEEETTSBHHHHHHHHHHHHCCCGGGEEEEETTEECCTTSBHHHHTCCTTTSBTTBCEEEEEEEB
T ss_pred EEEEEecCCEEEEEEeCCcChHHHHHHHHHHHhCCCHHHeEEEECCeECCCCCCHHHcCcccccccCCCCCEEEEEec
Confidence 6778887665578999999999999999999999999999999999999999999999999 6888877654
No 94
>1wgh_A Ubiquitin-like 3, HCG-1 protein; ubiquitin-like fold, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Mus musculus} SCOP: d.15.1.1
Probab=97.51 E-value=0.00071 Score=53.08 Aligned_cols=74 Identities=16% Similarity=0.162 Sum_probs=61.9
Q ss_pred CCCcEEEEEEeCCce-EEEEEcCCChHHHHHHHHHHH------cCC--CCCceEEEECCcccCCCCCcccCCCCCCcEEE
Q 027553 146 ERAKIVVSIQDKGGL-KQFRVYADDKFERLFKMYADK------VNL--DQENLVFCFDGDKIGPEATPASLEMEDNDIIE 216 (222)
Q Consensus 146 ~~~kItIkV~~qdg~-v~FkIk~tT~L~KLf~aYaer------~gl--~~~~lrF~FDG~rI~~~~TP~sLgMEDGDiID 216 (222)
....|.|+|+.-.|. +.|.|.++++...|....+.. -|+ ++...||+|.|+.|.++.|..++++..|+.+-
T Consensus 13 ~~~~m~I~vKtl~G~t~~lev~~s~TV~~lK~kI~~~~p~dwke~~p~p~~qqrLIy~GK~LeD~~TL~~y~I~~~~~~t 92 (116)
T 1wgh_A 13 PADMINLRLILVSGKTKEFLFSPNDSASDIAKHVYDNWPMDWEEEQVSSPNILRLIYQGRFLHGNVTLGALKLPFGKTTV 92 (116)
T ss_dssp CSSSEEEEEECSSSCEEEEEECTTCBHHHHHHHHHHSSSCCSSCCCCCCTTTEEEEETTEEECSSCBTTTTTCCSSCEEE
T ss_pred CCCeEEEEEEeCCCCEEEEEECCcCHHHHHHHHHHHhcccccccCCCCChHHEEEEECCcCCCCCCcHHHcCCCCCCceE
Confidence 345688898875554 789999999999999999984 454 58999999999999999999999999887654
Q ss_pred EEe
Q 027553 217 VHT 219 (222)
Q Consensus 217 V~i 219 (222)
+|+
T Consensus 93 lhL 95 (116)
T 1wgh_A 93 MHL 95 (116)
T ss_dssp EEE
T ss_pred EEE
Confidence 443
No 95
>4ajy_B Transcription elongation factor B polypeptide 2; E3 ubiquitin ligase, transcription factor, hypoxic signaling transcription; 1.73A {Homo sapiens} PDB: 1lqb_A 1vcb_A 2c9w_B 2izv_B 2jz3_B 2xai_C 3dcg_A 3zrc_A* 3zrf_A 3ztc_A* 3ztd_A* 3zun_A* 1lm8_B 4b95_A* 2fnj_B 4b9k_A* 4awj_A*
Probab=97.48 E-value=0.00069 Score=53.77 Aligned_cols=71 Identities=6% Similarity=0.012 Sum_probs=64.8
Q ss_pred EEEEEEeCCceEEEEEcCCChHHHHHHHHHHHcCCCCCceEEEECCcccCCCCCcccCCCCC-------CcEEEEEec
Q 027553 150 IVVSIQDKGGLKQFRVYADDKFERLFKMYADKVNLDQENLVFCFDGDKIGPEATPASLEMED-------NDIIEVHTK 220 (222)
Q Consensus 150 ItIkV~~qdg~v~FkIk~tT~L~KLf~aYaer~gl~~~~lrF~FDG~rI~~~~TP~sLgMED-------GDiIDV~ik 220 (222)
+-|+|+.....+++.+.++++...|......+.|+++..-|++|+|+.+.++.|-.++|+.+ +.+|....+
T Consensus 3 vFl~Ikr~ktTI~ldve~sdTV~~lK~kI~~~~giPp~qQrLI~~Gk~LeD~kTL~dy~I~~~ta~~q~~atl~Lvlr 80 (118)
T 4ajy_B 3 VFLMIRRHKTTIFTDAKESSTVFELKRIVEGILKRPPDEQRLYKDDQLLDDGKTLGECGFTSQTARPQAPATVGLAFR 80 (118)
T ss_dssp EEEEEEEBTEEEEEEEETTSBHHHHHHHHHHHHCCCGGGEEEEETTEECCTTSBTTTTTCCGGGSBTTBCEEEEEEEC
T ss_pred eEEEEecCCEEEEEEcCCCChHHHHHHHHHHHHCCCHHHeEEEeCCeECCCcCCHHHcCCCcCcccCCCCCEEEEEEe
Confidence 56788877767899999999999999999999999999999999999999999999999999 999876653
No 96
>3ai5_A Yeast enhanced green fluorescent protein, ubiquit; ubiquitin, fusion protein, fluore protein, transcription; HET: CR2; 1.40A {Aequorea victoria} PDB: 3ako_B*
Probab=97.47 E-value=0.00044 Score=62.51 Aligned_cols=75 Identities=12% Similarity=0.222 Sum_probs=66.9
Q ss_pred CCcEEEEEEeCCce-EEEEEcCCChHHHHHHHHHHHcCCCCCceEEEECCcccCCCCCcccCCCCCCcEEEEEecc
Q 027553 147 RAKIVVSIQDKGGL-KQFRVYADDKFERLFKMYADKVNLDQENLVFCFDGDKIGPEATPASLEMEDNDIIEVHTKK 221 (222)
Q Consensus 147 ~~kItIkV~~qdg~-v~FkIk~tT~L~KLf~aYaer~gl~~~~lrF~FDG~rI~~~~TP~sLgMEDGDiIDV~ikQ 221 (222)
...+.|.|+..+|. +.+.|..+++...|....+++.|++++..|++|.|+.|.++.|-.++++.+|++|.+.++.
T Consensus 231 ~~~MqI~VKtl~Gk~~~leV~~s~TV~dLK~kI~~~~GIp~~~QRLi~~Gk~L~D~~TLsdygI~~gstL~LvlRL 306 (307)
T 3ai5_A 231 TGSMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRL 306 (307)
T ss_dssp CCCEEEEEECTTSCEEEEEECTTCBHHHHHHHHHHHHCCCGGGCEEEETTEECCTTSBTGGGTCCTTCEEEEEC--
T ss_pred CCeEEEEEEeCCCCEEEEEECCCCcHHHHHHHHHHHHCcChHHEEEEeCCeecCCCCCHHHcCCCCCCEEEEEEeC
Confidence 45678888876664 7899999999999999999999999999999999999999999999999999999998753
No 97
>2gow_A HCG-1 protein, ubiquitin-like protein 3; BC059385, structural genomics, protein structure initiative, PSI; NMR {Homo sapiens}
Probab=97.45 E-value=0.00051 Score=54.49 Aligned_cols=73 Identities=16% Similarity=0.172 Sum_probs=62.1
Q ss_pred CCCcEEEEEEeCCce-EEEEEcCCChHHHHHHHHHH------HcCC--CCCceEEEECCcccCCCCCcccCCCCCCcEEE
Q 027553 146 ERAKIVVSIQDKGGL-KQFRVYADDKFERLFKMYAD------KVNL--DQENLVFCFDGDKIGPEATPASLEMEDNDIIE 216 (222)
Q Consensus 146 ~~~kItIkV~~qdg~-v~FkIk~tT~L~KLf~aYae------r~gl--~~~~lrF~FDG~rI~~~~TP~sLgMEDGDiID 216 (222)
....|.|+|+.-.|. +.|.|.++++...|....+. +-|+ ++..+|++|.|+.|.++.|..++++..|+.+-
T Consensus 14 ~~~~m~I~vktl~G~~~~lev~~s~TV~~lK~~I~~~~p~dwke~ip~~~~~qrLIy~GK~LeD~~TL~~y~I~~~~~~t 93 (125)
T 2gow_A 14 PADMINLRLILVSGKTKEFLFSPNDSASDIAKHVYDNWPMDWEEEQVSSPNILRLIYQGRFLHGNVTLGALKLPFGKTTV 93 (125)
T ss_dssp CTTCEEEEEECTTSCEEEEEECTTSBHHHHHHHHHSSCCCSCCCCTTCCGGGEEEESSSSEEESSCBTGGGCCCTTSEEE
T ss_pred CCCeEEEEEEeCCCCEEEEEeCCccHHHHHHHHHHHHCCcccccCCCCChHHEEEEECCcCCCCCCcHHHcCCCCCCceE
Confidence 355689999876655 78999999999999999998 5566 47999999999999999999999999999654
Q ss_pred EE
Q 027553 217 VH 218 (222)
Q Consensus 217 V~ 218 (222)
++
T Consensus 94 lh 95 (125)
T 2gow_A 94 MH 95 (125)
T ss_dssp EE
T ss_pred EE
Confidence 43
No 98
>2kdb_A Homocysteine-responsive endoplasmic reticulum- resident ubiquitin-like domain member...; UBL domain, membrane, polymorphism, transmembrane; NMR {Homo sapiens}
Probab=97.40 E-value=0.00036 Score=52.99 Aligned_cols=72 Identities=4% Similarity=0.150 Sum_probs=60.3
Q ss_pred CCCcEEEEEEeCCce---EEEEEcCCChHHHHHHHHHHHc-CCC-CCceEEEECCcccCCCCCcccC--CCCCCcEEEE
Q 027553 146 ERAKIVVSIQDKGGL---KQFRVYADDKFERLFKMYADKV-NLD-QENLVFCFDGDKIGPEATPASL--EMEDNDIIEV 217 (222)
Q Consensus 146 ~~~kItIkV~~qdg~---v~FkIk~tT~L~KLf~aYaer~-gl~-~~~lrF~FDG~rI~~~~TP~sL--gMEDGDiIDV 217 (222)
....|.|.|+..++. +.+.+.++++...|...-+++. |.+ +...|++|.|+.|.++.|-.++ ++.+|.+|.+
T Consensus 20 ~~~~m~I~VK~~~g~~~~i~l~v~~~~TV~~LK~~I~~~~~g~pp~~~QrLIy~Gk~L~D~~tL~~y~~~I~~~~tihL 98 (99)
T 2kdb_A 20 QGHPVTLIIKAPNQKYSDQTISCFLNWTVGKLKTHLSNVYPSKPLTKDQRLVYSGRLLPDHLQLKDILRKQDEYHMVHL 98 (99)
T ss_dssp ---CEEEEEECTTSSSCCEEEEECTTSBHHHHHHHHHHHSTTCCCTTTCCEEETTEEECTTSBTHHHHTTTCSEEEEEE
T ss_pred CCCeEEEEEEcCCCCEEEEEEEcCCCCHHHHHHHHHHHHhcCCCChhhEEEEECCEECCCCCCHHHHhcCCCCCCEEEe
Confidence 345688888876653 6788899999999999999875 555 5999999999999999999999 9999999875
No 99
>1oqy_A HHR23A, UV excision repair protein RAD23 homolog A; DNA repair, proteasome-mediated degradation, protein- protein interaction, replication; NMR {Homo sapiens} SCOP: a.5.2.1 a.5.2.1 a.189.1.1 d.15.1.1 PDB: 1qze_A 1tp4_A
Probab=97.37 E-value=0.00031 Score=64.76 Aligned_cols=73 Identities=7% Similarity=0.192 Sum_probs=62.3
Q ss_pred CCcEEEEEEeCCce-EEEEEcCCChHHHHHHHHHH---HcCCCCCceEEEECCcccCCCCCcccCCCCCCcEEEEEe
Q 027553 147 RAKIVVSIQDKGGL-KQFRVYADDKFERLFKMYAD---KVNLDQENLVFCFDGDKIGPEATPASLEMEDNDIIEVHT 219 (222)
Q Consensus 147 ~~kItIkV~~qdg~-v~FkIk~tT~L~KLf~aYae---r~gl~~~~lrF~FDG~rI~~~~TP~sLgMEDGDiIDV~i 219 (222)
...+.|.|+...|. +.+.|..+++...|....+. +.|+++...||+|.|+.|.++.|-.++++.+|++|.+++
T Consensus 5 ~~~M~I~VKtl~Gk~~~leV~~~~TV~~LK~~I~~~~~~~gip~~~QrLiy~GK~L~D~~tL~dygI~~gstIv~lv 81 (368)
T 1oqy_A 5 SSAVTITLKTLQQQTFKIRMEPDETVKVLKEKIEAEKGRDAFPVAGQKLIYAGKILSDDVPIRDYRIDEKNFVVVMV 81 (368)
T ss_dssp -CCCCEEEEETTTEEEEECCCTTCBHHHHHHHHHHHTCSSSCCSTEEEEESSSSEECSSSBTTTTCCCTTSCEEEEE
T ss_pred CceEEEEEEeCCCCEEEEEeCCCChHHHHHHHHHHHhCcCCCChhheEEEECCeecCCcCCHHHcCCCCCCEEEEEE
Confidence 34566777766665 78999999999999999998 456999999999999999999999999999999985554
No 100
>1wjn_A Tubulin-folding protein TBCE; ubiquitin-like domain, progressive motor neuropathy, structural genomics; NMR {Mus musculus} SCOP: d.15.1.1
Probab=97.33 E-value=0.0014 Score=48.61 Aligned_cols=75 Identities=8% Similarity=0.120 Sum_probs=62.2
Q ss_pred CCCcEEEEEEeC---Cce-EEEEEcCCChHHHHHHHHHHHcCCCCCceEEEECCc-----cc---CCCCCcccCCCCCCc
Q 027553 146 ERAKIVVSIQDK---GGL-KQFRVYADDKFERLFKMYADKVNLDQENLVFCFDGD-----KI---GPEATPASLEMEDND 213 (222)
Q Consensus 146 ~~~kItIkV~~q---dg~-v~FkIk~tT~L~KLf~aYaer~gl~~~~lrF~FDG~-----rI---~~~~TP~sLgMEDGD 213 (222)
....|+|.|.+. ++. +..++..+.+...|...-+..+|+++...++.|.+. .+ .+..|-.++++++|+
T Consensus 6 ~~~~v~l~I~~~~~~~~~~~e~~l~~~~TV~~LK~~i~~~~gip~~~q~L~~~~~~~~~~~~~L~~d~~~L~~y~i~~G~ 85 (97)
T 1wjn_A 6 SGQLLTLKIKCSNQPERQILEKQLPDSMTVQKVKGLLSRLLKVPVSELLLSYESSKMPGREIELENDLQPLQFYSVENGD 85 (97)
T ss_dssp SSCEEEEEEEESSCSSSCCEEEEEETTSBHHHHHHHHHTTTTCCTTTCEEEEECTTSCSCEEECCCSSSBSGGGTCCTTC
T ss_pred cCccEEEEEEecCCCCCcEEEEECCCCCCHHHHHHHHHHHHCCChhHeEEEEEcCCCCceeeccCCCcccHhhcCCCCCC
Confidence 466789988863 344 789999999999999999999999999999998632 23 567788999999999
Q ss_pred EEEEEec
Q 027553 214 IIEVHTK 220 (222)
Q Consensus 214 iIDV~ik 220 (222)
+|.|...
T Consensus 86 ~I~V~d~ 92 (97)
T 1wjn_A 86 CLLVRWS 92 (97)
T ss_dssp EEEEECC
T ss_pred EEEEEec
Confidence 9988753
No 101
>2pjh_A Protein NPL4, nuclear protein localization protein 4 homolog; UFD1, NPL4, AAA, protein binding, transport protein; NMR {Mus musculus}
Probab=97.10 E-value=0.00047 Score=50.36 Aligned_cols=70 Identities=14% Similarity=0.329 Sum_probs=56.0
Q ss_pred cEEEEEEeCCceEEEEEcCCChHHHHHHHHHHHcCCCCCceEEEECCcc---c--CCCCCcccCCCCCCcEEEEE
Q 027553 149 KIVVSIQDKGGLKQFRVYADDKFERLFKMYADKVNLDQENLVFCFDGDK---I--GPEATPASLEMEDNDIIEVH 218 (222)
Q Consensus 149 kItIkV~~qdg~v~FkIk~tT~L~KLf~aYaer~gl~~~~lrF~FDG~r---I--~~~~TP~sLgMEDGDiIDV~ 218 (222)
.+.|+|++.+|...+.+.+++++..|++.-++.++++.....+++.-.+ | ..+.|-.+||+..||+|-+.
T Consensus 4 ~m~lRvrs~~G~~Ri~v~~~~t~~~L~~~I~~~~~i~~~~~~l~~~~~p~~~l~~~~~~~l~~lgl~hGd~l~l~ 78 (80)
T 2pjh_A 4 SIIIRVQSPDGVKRITATKRETAATFLKKVAKEFGFQNNGFSVYINRNKTGEITASSSKSLHLLKIKHGDLLFLF 78 (80)
T ss_dssp CCCCEEECSSEEEECCCCSSCCHHHHHHHHHHHTCCCTTTCCCCCSCCGGGGSSSCCCCTTTTTCCCTTCCEEC-
T ss_pred cEEEEEECCCCCEEEEcCCcChHHHHHHHHHHHcCCCCCcceEEecCCCCCcccCCCCCCHHHcCCCCCCEEEEe
Confidence 3678999999987788999999999999999999998665444443322 3 37889999999999998764
No 102
>4b6w_A Tubulin-specific chaperone; CAP-Gly, ubiquitin-like; HET: MSE; 2.35A {Trypanosoma brucei brucei strain 927}
Probab=97.03 E-value=0.0033 Score=46.36 Aligned_cols=72 Identities=11% Similarity=0.047 Sum_probs=61.1
Q ss_pred cEEEEEEeCC--ce-EEEEEcCCChHHHHHHHHHHHcCCCCCceEEEE-------CCcccCCCCCcccCCCCCCcEEEEE
Q 027553 149 KIVVSIQDKG--GL-KQFRVYADDKFERLFKMYADKVNLDQENLVFCF-------DGDKIGPEATPASLEMEDNDIIEVH 218 (222)
Q Consensus 149 kItIkV~~qd--g~-v~FkIk~tT~L~KLf~aYaer~gl~~~~lrF~F-------DG~rI~~~~TP~sLgMEDGDiIDV~ 218 (222)
.|+|.|.... .. ...|+.++.+...|......+.|+++...|+.| -|..+.++.|-.++++++|.+|.+.
T Consensus 2 ~V~v~iths~~~~~~~E~r~~~s~TI~~lK~ki~~~~Gip~~~QrLi~~~~~~~~~g~~l~d~~tL~~Y~i~~g~~ihlv 81 (86)
T 4b6w_A 2 VVKVSLTHSASRMRVPEKRYGLAQTIESIKENVFTHFATPPEYMQLQLIDDRGITIEKNMANDKQLGYYQCRDEFVIHVV 81 (86)
T ss_dssp EEEEEEEETTCSCCEEEEEEETTSBHHHHHHHHHTTSCCCGGGEEEEEECTTSCEEESSCCTTSBGGGGTCCTTCEEEEE
T ss_pred EEEEEEEEcCCCCeEEEEEcCccCcHHHHHHHHHHHHCCCHHHEEEEEecCCCCceeeEcCCCCCHHHCCCCCCCEEEEE
Confidence 3666676433 23 479999999999999999999999999999996 4788999999999999999999886
Q ss_pred ec
Q 027553 219 TK 220 (222)
Q Consensus 219 ik 220 (222)
-.
T Consensus 82 d~ 83 (86)
T 4b6w_A 82 DL 83 (86)
T ss_dssp EC
T ss_pred eC
Confidence 43
No 103
>1se9_A Ubiquitin family; ubiquitin-like, cell-free, wheat GERM, structural genomics, protein structure initiative, CESG; NMR {Arabidopsis thaliana} SCOP: d.15.1.1
Probab=96.98 E-value=0.0031 Score=50.35 Aligned_cols=68 Identities=9% Similarity=0.047 Sum_probs=58.5
Q ss_pred CCcEEEEEEeCCce-E-EEEEcCCChHHHHHHHHHH-----HcCCCC--CceEEEECCcccCCCCCcccCCCCCCcE
Q 027553 147 RAKIVVSIQDKGGL-K-QFRVYADDKFERLFKMYAD-----KVNLDQ--ENLVFCFDGDKIGPEATPASLEMEDNDI 214 (222)
Q Consensus 147 ~~kItIkV~~qdg~-v-~FkIk~tT~L~KLf~aYae-----r~gl~~--~~lrF~FDG~rI~~~~TP~sLgMEDGDi 214 (222)
.+.+.|+|+.-+|. + .+.+.++++...|....+. +-|+++ +..||+|.|+.|.++.|-.++++..|+.
T Consensus 14 ~~~~~i~~kt~~G~~i~~l~v~psdTV~~lK~kI~~~~p~dkegiP~~~~qQrLIy~GK~LeD~~TLsdy~I~~~~~ 90 (126)
T 1se9_A 14 HNQLEIKFRLTDGSDIGPKAFPDATTVSALKETVISEWPREKENGPKTVKEVKLISAGKVLENSKTVKDYRSPVSNL 90 (126)
T ss_dssp CCCEEEEEEETTSCEEEEEEECTTCBHHHHHHHHHHHSCTTCSSSCCSGGGEEEEETTEECCTTSBGGGGSCCTTSC
T ss_pred cccEEEEEEECCCCEEEeeecCccCHHHHHHHHHHhhcccccccCCCChhhEEEEECCeECcCCCcHHHcCCCcCCc
Confidence 36788999887874 6 6999999999999998854 446665 7999999999999999999999999964
No 104
>2dzj_A Synaptic glycoprotein SC2; ubiquitin-like fold, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=96.95 E-value=0.0026 Score=46.90 Aligned_cols=71 Identities=13% Similarity=0.151 Sum_probs=59.9
Q ss_pred CCcEEEEEEeCCce-E--EE-EEcCCChHHHHHHHHHHH-cCCCCCceEEEEC--CcccCCCCCcccCCCCCCcEEEE
Q 027553 147 RAKIVVSIQDKGGL-K--QF-RVYADDKFERLFKMYADK-VNLDQENLVFCFD--GDKIGPEATPASLEMEDNDIIEV 217 (222)
Q Consensus 147 ~~kItIkV~~qdg~-v--~F-kIk~tT~L~KLf~aYaer-~gl~~~~lrF~FD--G~rI~~~~TP~sLgMEDGDiIDV 217 (222)
...+.|.|....|. . .+ .|.++++...|....++. .|+++...|+.|. |..|.++.|-.++++.+|.+|.+
T Consensus 8 ~~~M~I~Vk~~~g~~~~~~l~~v~~~~TV~~lK~~I~~~~~~i~~~~QrL~~~~~Gk~L~D~~tL~~y~i~~~stl~~ 85 (88)
T 2dzj_A 8 MKHYEVEILDAKTREKLCFLDKVEPHATIAEIKNLFTKTHPQWYPARQSLRLDPKGKSLKDEDVLQKLPVGTTATLYF 85 (88)
T ss_dssp CCCEEEEEEESSSCCCCEEEEEECSSCBHHHHHHHHHHHCSSSCTTTCCEESSTTSCCCCTTCBTTTSSCCSEEEEEE
T ss_pred eEEEEEEEECCCCCEEeeEEeEcCCCCcHHHHHHHHHHHhcCCChHHeEEEecCCCcCcCCCCCHHHcCCCCCCEEEE
Confidence 34577888876653 2 47 899999999999999994 7999988888876 99999999999999999998754
No 105
>3shq_A UBLCP1; phosphatase, hydrolase; 1.96A {Drosophila melanogaster}
Probab=96.81 E-value=0.0033 Score=56.61 Aligned_cols=74 Identities=16% Similarity=0.164 Sum_probs=64.0
Q ss_pred CCcEEEEEEeCCceEEEEEcCCChHHHHHHHHHHHcCCCCCceEEE---ECCcccCCCCCcccCCCCCCcEEEEEec
Q 027553 147 RAKIVVSIQDKGGLKQFRVYADDKFERLFKMYADKVNLDQENLVFC---FDGDKIGPEATPASLEMEDNDIIEVHTK 220 (222)
Q Consensus 147 ~~kItIkV~~qdg~v~FkIk~tT~L~KLf~aYaer~gl~~~~lrF~---FDG~rI~~~~TP~sLgMEDGDiIDV~ik 220 (222)
.+.|+|+|...+..+.+.|.+++++..|...-++..|+++..-+++ |.|..+.++.|-.++++.+|.+|.++..
T Consensus 3 ~~~i~i~Vk~~g~~~~v~v~~~~Tv~~lK~~I~~~tgVpp~~QkLi~~k~~Gk~l~D~~~L~~~~ik~g~~l~L~gs 79 (320)
T 3shq_A 3 VKEVVVIVKWSGKEYPVDLTDQDTVEVLRHEIFRKTQVRPERQKLLNLKYKGKTAADNVKISALELKPNFKLMMVGS 79 (320)
T ss_dssp -CEEEEEEEETTEEEEEEEETTSBHHHHHHHHHHHHCCCGGGCEETTCBSSSSBCCTTSBTTSSCCC--CEEEEECC
T ss_pred CceEEEEEEECCEEEEEEECCCCcHHHHHHHHHHHHCcCHHHeEEeecccCCcccCccccHHHcCCCCCCEEEEEcc
Confidence 4568888887666678999999999999999999999999999999 8999999999999999999999987643
No 106
>2al3_A TUG long isoform; TUG UBL1 insulin, endocytosis/exocytosis complex; NMR {Mus musculus} SCOP: d.15.1.2
Probab=96.11 E-value=0.013 Score=44.60 Aligned_cols=70 Identities=10% Similarity=0.132 Sum_probs=62.8
Q ss_pred EEEEEeCCce-EEEEEcCCChHHHHHHHHHHHcCCCCCceEEEECCcccCCCCCcccCCCCCCcEEEEEec
Q 027553 151 VVSIQDKGGL-KQFRVYADDKFERLFKMYADKVNLDQENLVFCFDGDKIGPEATPASLEMEDNDIIEVHTK 220 (222)
Q Consensus 151 tIkV~~qdg~-v~FkIk~tT~L~KLf~aYaer~gl~~~~lrF~FDG~rI~~~~TP~sLgMEDGDiIDV~ik 220 (222)
.|.|.+.++. ..++|.+++.|..+.+.-|+++|+++..+.+.|+++.|..+..---.||-+|-.++....
T Consensus 11 ~v~Vl~~n~rr~~VKvtp~t~L~~VL~eaC~K~gl~~~~~~Lkh~~k~lDLSlpfRlsgLpnnAkLELv~~ 81 (90)
T 2al3_A 11 AVSVLAPNGRRHTVKVTPSTVLLQVLEDTCRRQDFNPSEYDLKFQRTVLDLSLQWRFANLPNNAKLEMVPV 81 (90)
T ss_dssp CEEEECTTSCEEEECCCTTSBHHHHHHHHHHHTTCCGGGCEEEETTEEESSSCBHHHHCCCSSCEEEEECS
T ss_pred EEEEEcCCCcEEEEEECCCCCHHHHHHHHHHHhCCChhhCeEEeCCEeccccceeEecCCCCCCEEEEEEc
Confidence 6788888885 799999999999999999999999999999999999998888777779999988887653
No 107
>2dzm_A FAS-associated factor 1; ubiquitin-like domain, HFAF1, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=96.09 E-value=0.013 Score=44.59 Aligned_cols=71 Identities=7% Similarity=0.091 Sum_probs=59.5
Q ss_pred cEEEEEEeCCceEEEEEcCCChHHHHHHHHHHHcCCCCCceEEEE-CCcccCCCCCcccCCCCCCcEEEEEe
Q 027553 149 KIVVSIQDKGGLKQFRVYADDKFERLFKMYADKVNLDQENLVFCF-DGDKIGPEATPASLEMEDNDIIEVHT 219 (222)
Q Consensus 149 kItIkV~~qdg~v~FkIk~tT~L~KLf~aYaer~gl~~~~lrF~F-DG~rI~~~~TP~sLgMEDGDiIDV~i 219 (222)
-+.+++.-.++.+.+.|..+++...|...-+++.|+++..-+++| .|.++.++.|-.++++..|.+|.+..
T Consensus 9 m~~~~vk~~Gk~~~v~v~~~~TV~~LK~~I~~~tgIpp~~QkLi~~~~gkL~D~~tLs~~~I~~gstL~lvl 80 (100)
T 2dzm_A 9 MLDFRVEYRDRNVDVVLEDTCTVGEIKQILENELQIPVSKMLLKGWKTGDVEDSTVLKSLHLPKNNSLYVLT 80 (100)
T ss_dssp EEEEEEECSSCEEEEEEETTSBHHHHHHHHHHHHCCCTTTCCEECCSSSCCCTTSBHHHHCCCSEEEEEECC
T ss_pred eEEEEEEeCCeEEEEEECCCCcHHHHHHHHHHHHCCChhHeEEEccCCCCCCCcCCHHHcCCCCCCEEEEEe
Confidence 466777766667889999999999999999999999998888886 44448888899999999999987654
No 108
>2bps_A YUKD protein; ubiquitin-like protein, ubiquitin; 2.7A {Bacillus subtilis}
Probab=95.85 E-value=0.022 Score=42.24 Aligned_cols=71 Identities=10% Similarity=0.149 Sum_probs=59.3
Q ss_pred CCcEEEEEEe---CCceEEEEEcCCChHHHHHHHHHHHcCCCCC-----ceEEEECCcccCCCCCcccCCCCCCcEEEE
Q 027553 147 RAKIVVSIQD---KGGLKQFRVYADDKFERLFKMYADKVNLDQE-----NLVFCFDGDKIGPEATPASLEMEDNDIIEV 217 (222)
Q Consensus 147 ~~kItIkV~~---qdg~v~FkIk~tT~L~KLf~aYaer~gl~~~-----~lrF~FDG~rI~~~~TP~sLgMEDGDiIDV 217 (222)
+.+|+|++.. .++.+-+||...-++.+|...-.+.++++.. .+|..-.|..+.++++-.+.++.|||+|++
T Consensus 2 ~~yI~ITidl~~y~~~~~DLRIP~~~tvK~Li~~l~ea~~l~~~~~~~~~irv~NK~~~L~~~~~L~d~~ItnGD~Lei 80 (81)
T 2bps_A 2 GSYIDITIDLKHYNGSVFDLRLSDYHPVKKVIDIAWQAQSVSMPPREGHWIRVVNKDKVFSGECKLSDCGITNGDRLEI 80 (81)
T ss_dssp CCEEEEEEECTTTTCCEEEEEEETTSBTTHHHHHHHHHSCCCSCCCTTCEEEEGGGTEEEETTSBTGGGTCCTTCEEEE
T ss_pred CcEEEEEEEeeccCCceEEEECCCchhHHHHHHHHHHHhCCCcCCCCCCEEEEecCCEEEcCCCEEeeCCcCCCCEEEE
Confidence 4688888885 4445789999999999999999999998652 344444788889999999999999999987
No 109
>2xzm_9 RPS31E; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_9
Probab=95.00 E-value=0.0041 Score=52.74 Aligned_cols=64 Identities=11% Similarity=0.105 Sum_probs=0.0
Q ss_pred EEEEeCCce-EEEEEcCCChHHHHHHHHHHHcCCCCCceEEEECCcccCCCCCcccCCCCCCcEEEEEec
Q 027553 152 VSIQDKGGL-KQFRVYADDKFERLFKMYADKVNLDQENLVFCFDGDKIGPEATPASLEMEDNDIIEVHTK 220 (222)
Q Consensus 152 IkV~~qdg~-v~FkIk~tT~L~KLf~aYaer~gl~~~~lrF~FDG~rI~~~~TP~sLgMEDGDiIDV~ik 220 (222)
|.|..-+|. +.+.|.++++...|....+...|+++...||+|.|..|.++.|-. +|.+|.+.+.
T Consensus 3 I~VKtL~GktitLeV~~sdTV~~LK~kI~~keGIP~~qQRLIf~GK~LeD~~TLs-----~~STLhLvlR 67 (189)
T 2xzm_9 3 VQVKTLEGETKIYTLEQGTSVLDLKSQISQDMGFEIDMMTLVNNGFIAPNTELVT-----DDVTYYLSLK 67 (189)
T ss_dssp ----------------------------------------------------------------------
T ss_pred EEEEcCCCCEEEEEECCcChHHHHHHHHHHHhCcChhHEEEEecCeECCCCCccc-----CCCEEEEEEe
Confidence 445544554 789999999999999999999999999999999999998877765 8888887653
No 110
>1ryj_A Unknown; beta/alpha protein, structural genomics, protein structure initiative, OCSP, NESG, PSI; NMR {Methanothermococcusthermolithotrophicus} SCOP: d.15.3.2
Probab=94.33 E-value=0.39 Score=33.55 Aligned_cols=61 Identities=23% Similarity=0.297 Sum_probs=50.4
Q ss_pred EEEEEEeCCceEEEEEcCCChHHHHHHHHHHHcCCCCCceEEEECCcccCCCCCcccCCCCCCcEEEEEe
Q 027553 150 IVVSIQDKGGLKQFRVYADDKFERLFKMYADKVNLDQENLVFCFDGDKIGPEATPASLEMEDNDIIEVHT 219 (222)
Q Consensus 150 ItIkV~~qdg~v~FkIk~tT~L~KLf~aYaer~gl~~~~lrF~FDG~rI~~~~TP~sLgMEDGDiIDV~i 219 (222)
++|+|-++.+...+.+...+++..|.+. ++++...+.+..||.-+..+. -+.+||.|+++.
T Consensus 5 m~i~vNg~~~~~~~~~~~~~tv~~Ll~~----l~~~~~~v~vavN~~~v~~~~-----~L~~gD~V~ii~ 65 (70)
T 1ryj_A 5 MKFTVITDDGKKILESGAPRRIKDVLGE----LEIPIETVVVKKNGQIVIDEE-----EIFDGDIIEVIR 65 (70)
T ss_dssp EEEEEEETTEEEEEEESSCCBHHHHHHH----TTCCTTTEEEEETTEECCTTS-----BCCTTCEEEEEE
T ss_pred EEEEEeCccCceeEECCCCCcHHHHHHH----hCCCCCCEEEEECCEECCCcc-----cCCCCCEEEEEe
Confidence 6788888887777888888888888775 477888899999999997654 799999999875
No 111
>3qx1_A FAS-associated factor 1; UBX, protein binding, P97 binding; 1.60A {Homo sapiens} PDB: 3qwz_B* 3qc8_B 3qca_A 3qq8_B 3r3m_B 1h8c_A
Probab=92.10 E-value=1.4 Score=31.50 Aligned_cols=72 Identities=11% Similarity=0.188 Sum_probs=57.0
Q ss_pred CCcEEEEEEeCCce-EEEEEcCCChHHHHHHHHHHHcCCCCCceEEEE--CCccc---CCCCCcccCCCCCCcEEEEEe
Q 027553 147 RAKIVVSIQDKGGL-KQFRVYADDKFERLFKMYADKVNLDQENLVFCF--DGDKI---GPEATPASLEMEDNDIIEVHT 219 (222)
Q Consensus 147 ~~kItIkV~~qdg~-v~FkIk~tT~L~KLf~aYaer~gl~~~~lrF~F--DG~rI---~~~~TP~sLgMEDGDiIDV~i 219 (222)
....+|.|+-.+|. +.-+...+++++.|+..-.. .+.+...++|.- =.+.+ ..+.|-.++||-.+.++-|-.
T Consensus 5 ~~~~~i~iRlpdG~r~~~~F~~~~tl~~v~~fv~~-~~~~~~~f~L~t~fPrk~l~~~d~~~TL~e~gL~p~a~L~ve~ 82 (84)
T 3qx1_A 5 EPVSKLRIRTPSGEFLERRFLASNKLQIVFDFVAS-KGFPWDEYKLLSTFPRRDVTQLDPNKSLLEVKLFPQETLFLEA 82 (84)
T ss_dssp CCEEEEEEECTTSCEEEEEEETTSBHHHHHHHHHH-TTCCTTTEEEECSSSCCBGGGSCTTSBTTTTTCCSEEEEEEEE
T ss_pred CCeEEEEEECCCCCEEEEEeCCCCCHHHHHHHHHH-cCCCCCCeEEEeCCCCCCCcCCCCCCCHHHCCCCCCCEEEEEe
Confidence 45678888888986 78888899999999885544 677788888884 35667 357899999999999887754
No 112
>2cr5_A Reproduction 8; UBX domain, D0H8S2298E protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.15.1.2
Probab=91.75 E-value=0.85 Score=34.54 Aligned_cols=77 Identities=9% Similarity=0.135 Sum_probs=57.1
Q ss_pred CCCcCCCCcEEEEEEeCCce-EEEEEcCCChHHHHHHHHHHHcCCCCCceEEEE--CCcccC--CCCCcccCCCCCCcEE
Q 027553 141 SKPAIERAKIVVSIQDKGGL-KQFRVYADDKFERLFKMYADKVNLDQENLVFCF--DGDKIG--PEATPASLEMEDNDII 215 (222)
Q Consensus 141 ~~p~~~~~kItIkV~~qdg~-v~FkIk~tT~L~KLf~aYaer~gl~~~~lrF~F--DG~rI~--~~~TP~sLgMEDGDiI 215 (222)
+++.+....++|.|+-.+|. +.-+...+++++.|+.... ..+.....|+|.- =.+.+. .+.|-+++||-...++
T Consensus 15 EP~~~~~~~~~IqiRlpdG~r~~rrF~~~~tl~~v~~fv~-~~~~~~~~f~L~t~fPrk~l~~d~~~TL~e~gL~p~a~L 93 (109)
T 2cr5_A 15 EPSETAEEVVTVALRCPNGRVLRRRFFKSWNSQVLLDWMM-KVGYHKSLYRLSTSFPRRALEVEGGSSLEDIGITVDTVL 93 (109)
T ss_dssp CCCSSCSSEEEEEEECTTSCEEEEEEESSSBTHHHHHHHH-HHTCCTTTEEEECSSSCCBCCCCSSCBHHHHTCSSCEEE
T ss_pred CCCCCCCCcEEEEEECCCCCEEEEEeCCCCCHHHHHHHHH-hcCCCCCCeEEEeCCCCcCCCCCCCCCHHHcCCCCCeEE
Confidence 33343467899999999986 7778889999999987544 4466667777764 355564 4789999999999888
Q ss_pred EEE
Q 027553 216 EVH 218 (222)
Q Consensus 216 DV~ 218 (222)
-|-
T Consensus 94 ~Ve 96 (109)
T 2cr5_A 94 NVE 96 (109)
T ss_dssp EEE
T ss_pred EEE
Confidence 664
No 113
>3jyu_A Ubiquitin carboxyl-terminal hydrolase; domain in ubiquitin-specific peptidases (DUSP), proto- oncogene, ubiquitin-fold, UBL, protease, thioesterase; HET: 1PS; 2.37A {Mus musculus}
Probab=91.70 E-value=1.4 Score=37.36 Aligned_cols=72 Identities=7% Similarity=0.076 Sum_probs=56.9
Q ss_pred cEEEEEEeCCc--e-EEEEEcCCChHHHHHHHHHHHcCCCCC-ceEEEE-C----CcccC-CCCCcccCCCCCCcEEEEE
Q 027553 149 KIVVSIQDKGG--L-KQFRVYADDKFERLFKMYADKVNLDQE-NLVFCF-D----GDKIG-PEATPASLEMEDNDIIEVH 218 (222)
Q Consensus 149 kItIkV~~qdg--~-v~FkIk~tT~L~KLf~aYaer~gl~~~-~lrF~F-D----G~rI~-~~~TP~sLgMEDGDiIDV~ 218 (222)
.+.|++..... . +.+.+.+..++..|++.-|+.++++.+ .+|++. . ...|. .+.|..++++.+|+.|-+=
T Consensus 139 P~~l~l~~~~~~~~~~~~~~Sk~~ti~~l~~~~~~~~~i~~~~~~RLW~~~~~~~~~~L~~~~~tl~d~~L~~~Q~illE 218 (231)
T 3jyu_A 139 LLELKLCENSDPTNVLSCHFSKADTIATIEKEMRKLFNIPAERETRLWNKYMSNTYEQLSKLDNTIQDAGLYQGQVLVIE 218 (231)
T ss_dssp CEEEEEEETTEEEEEEEEEECTTCBHHHHHHHHHHHTTCCTTSCEEEEECSSSSSCEECCCTTSBTTTTTCCTTEEEEEE
T ss_pred cceEEEEecCCCCceEEEEecccCcHHHHHHHHHHHhCCCCCCeEEEEEecCCCCHhhhcCCCCCHHHhCCCCCCEEEEE
Confidence 45666665443 2 468889999999999999999999986 799998 3 34555 4689999999999998765
Q ss_pred ec
Q 027553 219 TK 220 (222)
Q Consensus 219 ik 220 (222)
++
T Consensus 219 ~r 220 (231)
T 3jyu_A 219 PQ 220 (231)
T ss_dssp EC
T ss_pred Ee
Confidence 43
No 114
>4efo_A Serine/threonine-protein kinase TBK1; ubiquitin like domain, transferase; 1.77A {Homo sapiens}
Probab=90.06 E-value=1.1 Score=34.04 Aligned_cols=51 Identities=6% Similarity=0.181 Sum_probs=44.3
Q ss_pred cEEEEEEeCCc-e-EEEEEcCCChHHHHHHHHHHHcCCCCCceEEEECCcccC
Q 027553 149 KIVVSIQDKGG-L-KQFRVYADDKFERLFKMYADKVNLDQENLVFCFDGDKIG 199 (222)
Q Consensus 149 kItIkV~~qdg-~-v~FkIk~tT~L~KLf~aYaer~gl~~~~lrF~FDG~rI~ 199 (222)
+..|+|-+-+. . ++|-|.++.++..+.+.-+++.|+++.+-+++|.|+.+.
T Consensus 12 rkvvHVf~~~~a~~h~v~I~~~etv~~~ke~V~eqTgIp~~~Q~LL~eg~~l~ 64 (94)
T 4efo_A 12 RMVIHVFSLQQMTAHKIYIHSYNTATIFHELVYKQTKIISSNQELIYEGRRLV 64 (94)
T ss_dssp EEEEEEEETTTTEEEEEEEETTCBHHHHHHHHHHHHCCCGGGEEEEETTEEEC
T ss_pred ceeEEEEEcccceEEEEEeccchHHHHHHHHHHHHhCCCHHHHHHHhCCCccc
Confidence 45677777664 3 689999999999999999999999999999999997765
No 115
>3rpf_C Molybdopterin converting factor, subunit 1 (MOAD); MCSG, PSI-biology, structural genomics, midwest center for S genomics, transferase; 1.90A {Helicobacter pylori}
Probab=89.64 E-value=1.1 Score=31.17 Aligned_cols=52 Identities=17% Similarity=0.314 Sum_probs=39.9
Q ss_pred EEEcCCChHHHHHHHHHHHcCCCC--CceEEEECCcccCCCCCcccCCCCCCcEEEEEe
Q 027553 163 FRVYADDKFERLFKMYADKVNLDQ--ENLVFCFDGDKIGPEATPASLEMEDNDIIEVHT 219 (222)
Q Consensus 163 FkIk~tT~L~KLf~aYaer~gl~~--~~lrF~FDG~rI~~~~TP~sLgMEDGDiIDV~i 219 (222)
+.+ ..+++..|++..+.+.++.. ..+.+..||+.|...+| -+.+||.|.++.
T Consensus 16 ~e~-~~~tv~~ll~~L~~~~~l~~~l~~~~vavN~~~v~~~~~----~l~~gDeV~i~P 69 (74)
T 3rpf_C 16 FFI-KANDLKELRAILQEKEGLKEWLGVCAIALNDHLIDNLNT----PLKDGDVISLLP 69 (74)
T ss_dssp EEE-ECSSHHHHHHHHHTCTTTTTTTTTCEEEESSSEECCTTC----CCCTTCEEEEEC
T ss_pred Eee-CCCcHHHHHHHHHHCcCHHHHhhccEEEECCEEcCCCCc----CCCCCCEEEEEC
Confidence 444 56789999998887655432 77999999999865555 499999999874
No 116
>2daj_A KIAA0977 protein, COBL-like 1; ubiquitin-like domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=89.28 E-value=1.2 Score=33.80 Aligned_cols=66 Identities=15% Similarity=0.186 Sum_probs=56.1
Q ss_pred CCCcEEEEEEeCCce-EEEEEcCCChHHHHHHHHHHHcCCCCCceEEEEC---CcccCCCCCcccCCCCC
Q 027553 146 ERAKIVVSIQDKGGL-KQFRVYADDKFERLFKMYADKVNLDQENLVFCFD---GDKIGPEATPASLEMED 211 (222)
Q Consensus 146 ~~~kItIkV~~qdg~-v~FkIk~tT~L~KLf~aYaer~gl~~~~lrF~FD---G~rI~~~~TP~sLgMED 211 (222)
+-..+.+.|...... ...||.+..+|+.|+-+.|++..+++.++.|+-+ ++.+.-+.+-.+|||..
T Consensus 7 PE~TvRLvVNy~~tQKtVvRVSP~vpL~ellp~IC~Kcefdp~~~~Ll~d~~~~e~LdLskSLndlgirE 76 (91)
T 2daj_A 7 GEKTVRVVINFKKTQKTIVRVSPHASLQELAPIICSKCEFDPLHTLLLKDYQSQEPLDLTKSLNDLGLRE 76 (91)
T ss_dssp CCSCEEEEEEETTTEEEEEEECSSSCTTTHHHHHHHHTTCCTTSEEEESCSSCCCBCCTTSCHHHHTCSE
T ss_pred CccEEEEEEeecCcceeEEEeCCCCcHHHHHHHHhhcccCChhhEEEecCCCCCcccchhcchhhhhhhh
Confidence 446778888777766 5899999999999999999999999999999875 66777788888888875
No 117
>4a3p_A Ubiquitin carboxyl-terminal hydrolase 15; 1.40A {Homo sapiens} PDB: 4a3o_A 3pv1_A 3ppa_A* 3t9l_A 3lmn_A
Probab=88.08 E-value=2.3 Score=35.76 Aligned_cols=72 Identities=10% Similarity=0.108 Sum_probs=56.0
Q ss_pred cEEEEEEeCCc--e-EEEEEcCCChHHHHHHHHHHHcCCCCC-ceEEEE-C----CcccCC-CCCcccCCCCCCcEEEEE
Q 027553 149 KIVVSIQDKGG--L-KQFRVYADDKFERLFKMYADKVNLDQE-NLVFCF-D----GDKIGP-EATPASLEMEDNDIIEVH 218 (222)
Q Consensus 149 kItIkV~~qdg--~-v~FkIk~tT~L~KLf~aYaer~gl~~~-~lrF~F-D----G~rI~~-~~TP~sLgMEDGDiIDV~ 218 (222)
.+.|++..... . +.+.+.+..++..|++.-|+.++++.+ .+|++. . ...|.. +.|..+++|.+|+.|-+=
T Consensus 127 P~~l~l~~~~~~~~~~~~~~Sk~~ti~~l~~~~~~~~~i~~~~~~RlW~~~~~~~~~~L~~~~~tl~~~~l~~~Q~illE 206 (217)
T 4a3p_A 127 LTELKLCENGNMNNVVTRRFSKADTIDTIEKEIRKIFSIPDEKETRLWNKYMSNTFEPLNKPDSTIQDAGLYQGQVLVIE 206 (217)
T ss_dssp CEEEEEEETTEEEEEEEEEECTTSBHHHHHHHHHHHTTCCTTSCEEEEEEEETTEEEECCCTTSBHHHHTCCTTCEEEEE
T ss_pred ccEEEEEecCCCCcceEEEEcccchHHHHHHHHHHHhCCCCCCceEEEEecCCCCeeecCCCCCCHHHhCCCCCCEEEEE
Confidence 45556654443 2 578999999999999999999999986 799986 2 334444 569999999999999775
Q ss_pred ec
Q 027553 219 TK 220 (222)
Q Consensus 219 ik 220 (222)
++
T Consensus 207 ~r 208 (217)
T 4a3p_A 207 QK 208 (217)
T ss_dssp EC
T ss_pred Ee
Confidence 54
No 118
>1oey_A P67-PHOX, neutrophil cytosol factor 2; immune system, PB1 heterodimer/complex, NADPH oxidase, PB1 D heterodimerization; 2.0A {Homo sapiens} SCOP: d.15.2.2
Probab=87.59 E-value=1.4 Score=32.68 Aligned_cols=47 Identities=11% Similarity=0.147 Sum_probs=42.5
Q ss_pred CcEEEEEEeCCceEEEEEcCCChHHHHHHHHHHHcCCCCCceEEEECC
Q 027553 148 AKIVVSIQDKGGLKQFRVYADDKFERLFKMYADKVNLDQENLVFCFDG 195 (222)
Q Consensus 148 ~kItIkV~~qdg~v~FkIk~tT~L~KLf~aYaer~gl~~~~lrF~FDG 195 (222)
..++|+|+++ -.+-++|.+..+|..|.+.-+++++++.+.+++.|.-
T Consensus 4 ~~~~VKV~~~-~tvairvp~~~~y~~L~~~l~~kL~l~~~~~~LsYk~ 50 (83)
T 1oey_A 4 MAYTLKVHYK-YTVVMKTQPGLPYSQVRDMVSKKLELRLEHTKLSYRP 50 (83)
T ss_dssp SCEEEEEESS-SEEEEEECTTCCHHHHHHHHHHHTTCCGGGCCEEECC
T ss_pred CcEEEEEEEE-EEEEEECCCCCCHHHHHHHHHHHhCCCcceeEEEeeC
Confidence 3489999998 4789999999999999999999999999999999943
No 119
>2kvr_A Ubiquitin carboxyl-terminal hydrolase 7; USP7, ubiquitin-like domain, UBL, ubiquitin specific protease, HOST-virus interaction, nucleus, protease; NMR {Homo sapiens}
Probab=86.57 E-value=1.3 Score=34.99 Aligned_cols=52 Identities=12% Similarity=0.249 Sum_probs=41.8
Q ss_pred CCCcEEEEEEeCC------c----------eEEEEEcCCChHHHHHHHHHHHcCCCCCceEEEECCcc
Q 027553 146 ERAKIVVSIQDKG------G----------LKQFRVYADDKFERLFKMYADKVNLDQENLVFCFDGDK 197 (222)
Q Consensus 146 ~~~kItIkV~~qd------g----------~v~FkIk~tT~L~KLf~aYaer~gl~~~~lrF~FDG~r 197 (222)
..-+++|+|...+ | ...|||.++++|..|+...++.+|+++..+|||+--.|
T Consensus 27 ahlY~~vkv~t~~~f~~~~gfDL~~~~~~~~~~~rv~k~~~~~~~~~~va~~lg~~~~~~RlW~~~~R 94 (130)
T 2kvr_A 27 AHLYMQVQIVAEDQFCGHQGNDMYDEEKVKYTVFKVLKNSSLAEFVQSLSQTMGFPQDQIRLWPMQAR 94 (130)
T ss_dssp STTCCEEEEECCSTTTTCCCCSSCCSSSCSCEEEECCTTSBHHHHHHHHHHHHCCCGGGCEEEECCCC
T ss_pred HhceeEEEEecHHHHHhccCccCcCCccCCcceEEEeccCcHHHHHHHHHHHhCCCcccEEEEEeecC
Confidence 4667777776311 1 14799999999999999999999999999999985444
No 120
>2dzk_A UBX domain-containing protein 2; ubiquitin-like fold, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} PDB: 2kxj_A
Probab=86.43 E-value=5.9 Score=29.91 Aligned_cols=75 Identities=11% Similarity=0.035 Sum_probs=58.1
Q ss_pred CCCCcEEEEEEeCCce-EEEEEcCCChHHHHHHHHHHHcCCCCCceEEEE--CCcccC---CCCCcccCCCCCCcEEEEE
Q 027553 145 IERAKIVVSIQDKGGL-KQFRVYADDKFERLFKMYADKVNLDQENLVFCF--DGDKIG---PEATPASLEMEDNDIIEVH 218 (222)
Q Consensus 145 ~~~~kItIkV~~qdg~-v~FkIk~tT~L~KLf~aYaer~gl~~~~lrF~F--DG~rI~---~~~TP~sLgMEDGDiIDV~ 218 (222)
+.....+|.|+-.+|. +.-+...+++++.|++......+.+...+.|.- =-+.+. .+.|-.+|||-...++-|.
T Consensus 9 ~~~~~t~IqIRlpdG~rl~~rF~~~~tl~~v~~fV~~~~~~~~~~f~L~t~fPrk~l~~~d~~~TL~elgL~psa~L~v~ 88 (109)
T 2dzk_A 9 DRSTIARIQFRLPDGSSFTNQFPSDAPLEEARQFAAQTVGNTYGNFSLATMFPRREFTREDYKRRLLDLELAPSASVVLL 88 (109)
T ss_dssp CCSCCEEEEEECSSSCEEEEEECTTSBHHHHHHHHHHHHTTSSCSCEEECSSSCCBCCTTTTTSBTGGGTCSSEEEEEEE
T ss_pred CCCCcEEEEEECCCCCEEEEEeCCCCCHHHHHHHHHhccCCCCCceEEEcCCCCcCCcccccCCCHHHCCCCCceEEEEE
Confidence 3556789999988986 788999999999999987777777667777764 344454 3679999999998777665
Q ss_pred e
Q 027553 219 T 219 (222)
Q Consensus 219 i 219 (222)
.
T Consensus 89 ~ 89 (109)
T 2dzk_A 89 P 89 (109)
T ss_dssp C
T ss_pred E
Confidence 4
No 121
>1j0g_A Hypothetical protein 1810045K17; ubiquitin-like fold, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Mus musculus} SCOP: d.15.1.6 PDB: 1wxs_A 1l7y_A
Probab=86.17 E-value=3.2 Score=31.25 Aligned_cols=75 Identities=16% Similarity=0.234 Sum_probs=59.0
Q ss_pred CCCcEEEEEEeCC--c-e-EEEEEcCCChHHHHHHHHHHHcCCCCCceE-EEECCcccCCCCCcccCCCCCCcEEEEEec
Q 027553 146 ERAKIVVSIQDKG--G-L-KQFRVYADDKFERLFKMYADKVNLDQENLV-FCFDGDKIGPEATPASLEMEDNDIIEVHTK 220 (222)
Q Consensus 146 ~~~kItIkV~~qd--g-~-v~FkIk~tT~L~KLf~aYaer~gl~~~~lr-F~FDG~rI~~~~TP~sLgMEDGDiIDV~ik 220 (222)
...+++.+|.-.. + . ..+.|-..+||..+.+.-|+.+++++.+-- ..-||.-|++.+|....=|..|-.+....+
T Consensus 7 ~~~kVtFkItltSdpklpfkvlsVPE~~PftAVlkfaaEeF~vp~~TsAiiT~dGiGInP~QtAGnvFlKhGseLrlIPR 86 (92)
T 1j0g_A 7 TMSKVSFKITLTSDPRLPYKVLSVPESTPFTAVLKFAAEEFKVPAATSAIITNDGIGINPAQTAGNVFLKHGSELRIIPR 86 (92)
T ss_dssp CSCEEEEEEEETTSTTCCEEEEEEETTSBHHHHHHHHHHHTTCCSSSEEEECTTSCCCCCSSBHHHHHHHTCSEEEEEEC
T ss_pred CCceEEEEEEEccCCCCCceEEecCccCchHHHHHHHHHHcCCCccceEEEecCCcccChhhccchhhhhcCceeEeccc
Confidence 3477888876322 2 2 579999999999999999999999886544 445899999999999888888877766543
No 122
>1vd2_A Protein kinase C, IOTA type; PB1 domain, OPCA motif, APKC, ZIP/P62, MEK5, molecular recognition, transferase; NMR {Homo sapiens} SCOP: d.15.2.2 PDB: 1wmh_A
Probab=85.66 E-value=3.9 Score=30.54 Aligned_cols=53 Identities=17% Similarity=0.244 Sum_probs=44.3
Q ss_pred CCcEEEEEEeCCceEEEEEcCCChHHHHHHHHHHHcCCCC-CceEEEE---CCcccC
Q 027553 147 RAKIVVSIQDKGGLKQFRVYADDKFERLFKMYADKVNLDQ-ENLVFCF---DGDKIG 199 (222)
Q Consensus 147 ~~kItIkV~~qdg~v~FkIk~tT~L~KLf~aYaer~gl~~-~~lrF~F---DG~rI~ 199 (222)
+..|+||+..++..+.|+|..+..|..|.+.-++++++.. ..|.+.| +|..+.
T Consensus 4 ~~~vkvK~~~~gdi~~~~v~~~i~~~~L~~kv~~~~~~~~~~~f~lky~DEeGD~it 60 (89)
T 1vd2_A 4 GSQVRVKAYYRGDIMITHFEPSISFEGLCNEVRDMCSFDNEQLFTMKWIDEEGDPCT 60 (89)
T ss_dssp SSCEEEEEESSSCEEEEEECTTCCHHHHHHHHHHHTTCCSSCCEEEEECCSSSCCEE
T ss_pred CCeEEEEEEeCCeEEEEECCCCCCHHHHHHHHHHHhCCCCCCeEEEEEECCCCCccc
Confidence 4569999998876689999999999999999999999976 5599988 355543
No 123
>2l32_A Small archaeal modifier protein 2; protein BIN; NMR {Haloferax volcanii}
Probab=82.58 E-value=2.5 Score=30.08 Aligned_cols=60 Identities=17% Similarity=0.328 Sum_probs=45.0
Q ss_pred cEEEEEEeCCceEEEEEcCCChHHHHHHHHHHHcCCCCCceEEEECCcccCCCCCcccCCCCCCcEEEEEe
Q 027553 149 KIVVSIQDKGGLKQFRVYADDKFERLFKMYADKVNLDQENLVFCFDGDKIGPEATPASLEMEDNDIIEVHT 219 (222)
Q Consensus 149 kItIkV~~qdg~v~FkIk~tT~L~KLf~aYaer~gl~~~~lrF~FDG~rI~~~~TP~sLgMEDGDiIDV~i 219 (222)
+|+|++.+. ....+.+...++++.|. +.+|+++..+....||+-+..+. -+ +||.|+++.
T Consensus 2 ~v~Vkl~g~-~~~~~ev~~g~Tv~dLL----~~Lgl~~~~VvV~vNG~~v~~d~-----~l-~GD~VeIv~ 61 (74)
T 2l32_A 2 NVTVEVVGE-ETSEVAVDDDGTYADLV----RAVDLSPHEVTVLVDGRPVPEDQ-----SV-EVDRVKVLR 61 (74)
T ss_dssp EEEEECSSS-SEEEEECSTTCSHHHHH----HTTCCCSSCCCEECCCCCCCTTS-----SS-CCCCEEECS
T ss_pred EEEEEEeCc-cceeEEcCCCCcHHHHH----HHcCCCcceEEEEECCEECCHHH-----CC-CCCEEEEEE
Confidence 466776643 23467888888887765 57899999999999999887666 13 499999863
No 124
>1wj4_A KIAA0794 protein; UBX domain, beta-grAsp fold, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: d.15.1.2
Probab=81.08 E-value=6.8 Score=30.36 Aligned_cols=72 Identities=15% Similarity=0.144 Sum_probs=55.6
Q ss_pred CCCcEEEEEEeCCce-EEEEEcCCChHHHHHHHHHHHcCCCCCceEEEE--CCccc---CCCCCcccCCCCCCcEEEEE
Q 027553 146 ERAKIVVSIQDKGGL-KQFRVYADDKFERLFKMYADKVNLDQENLVFCF--DGDKI---GPEATPASLEMEDNDIIEVH 218 (222)
Q Consensus 146 ~~~kItIkV~~qdg~-v~FkIk~tT~L~KLf~aYaer~gl~~~~lrF~F--DG~rI---~~~~TP~sLgMEDGDiIDV~ 218 (222)
....++|.|+-.+|. +.-+...++++..|+...... +.....|.|+- =.+.+ ..+.|-.+|||-....+-|.
T Consensus 40 ~~~~t~IqIRlPdG~rl~~rF~~~~tl~~V~~fV~~~-~~~~~~F~L~t~fPrk~l~~~d~~~TL~e~gL~psa~Liv~ 117 (124)
T 1wj4_A 40 NGPKAQLMLRYPDGKREQITLPEQAKLLALVKHVQSK-GYPNERFELLTNFPRRKLSHLDYDITLQEAGLCPQETVFVQ 117 (124)
T ss_dssp SSCEEEEEEECTTSCEEEEEEETTSCHHHHHHHHHHH-HCCTTTEEEECSSSCCEETSSCSSSCTTTTTCCSSBCCEEE
T ss_pred CCCcEEEEEECCCCCEEEEEeCCCCCHHHHHHHHHhc-CCCCCCeEEecCCCCcCCccCCCCCCHHHCCCCCceEEEEE
Confidence 456799999999986 788889999999999866554 77777788774 35666 24789999999886665543
No 125
>1wj6_A KIAA0049 protein, RSGI RUH-024; PB1 domain, protein binding, structural genomics, riken structural genomics/proteomics initiative; NMR {Homo sapiens} SCOP: d.15.2.2
Probab=80.00 E-value=7.8 Score=29.86 Aligned_cols=61 Identities=11% Similarity=0.278 Sum_probs=47.7
Q ss_pred CCCCcCCCCcEEEEEEeCCceEEEEEcC--CChHHHHHHHHHHHcCCCCCceEEEE---CCcccCCCC
Q 027553 140 VSKPAIERAKIVVSIQDKGGLKQFRVYA--DDKFERLFKMYADKVNLDQENLVFCF---DGDKIGPEA 202 (222)
Q Consensus 140 ~~~p~~~~~kItIkV~~qdg~v~FkIk~--tT~L~KLf~aYaer~gl~~~~lrF~F---DG~rI~~~~ 202 (222)
+..|.+=...++|+|...+....|.|.- ++++..|....+..+|++ ++++.| +|+.|+-+.
T Consensus 5 ~~~~~~m~~~v~lkV~f~ge~~rF~Vs~~~~~tweel~~mvk~~f~L~--~~~IkY~DEenD~V~i~S 70 (101)
T 1wj6_A 5 SSGPHSMEPQVTLNVTFKNEIQSFLVSDPENTTWADIEAMVKVSFDLN--TIQIKYLDEENEEVSINS 70 (101)
T ss_dssp SCCCCSSCSCEEEEEEETTEEEEEEESCTTTSCHHHHHHHHHHHHCCS--SBCCEEECTTSCEECCCS
T ss_pred CCCccccCccEEEEEEEcCCeeEEEecCCCCCCHHHHHHHHHHHcCCC--ceEEEEecCCCCEEEEec
Confidence 3444445678999999999877888855 999999999999999986 666666 677776543
No 126
>2bkf_A Zinc-finger protein NBR1 (NEXT to breast cancer 1; PB1 domain, interaction domain, Z finger; 1.56A {Homo sapiens} SCOP: d.15.2.2 PDB: 2g4s_A
Probab=75.58 E-value=9.8 Score=28.53 Aligned_cols=51 Identities=10% Similarity=0.296 Sum_probs=42.1
Q ss_pred CcEEEEEEeCCceEEEEEcC--CChHHHHHHHHHHHcCCCCCceEEEE---CCcccCC
Q 027553 148 AKIVVSIQDKGGLKQFRVYA--DDKFERLFKMYADKVNLDQENLVFCF---DGDKIGP 200 (222)
Q Consensus 148 ~kItIkV~~qdg~v~FkIk~--tT~L~KLf~aYaer~gl~~~~lrF~F---DG~rI~~ 200 (222)
..++|+|...+....|.|.- ++++..|....+..+|++ ++++.| +|..|+-
T Consensus 5 ~~v~lkV~f~ge~~rf~vs~~~~~tweel~~mvk~~f~L~--~~~ikY~DEenD~v~i 60 (87)
T 2bkf_A 5 PQVTLNVTFKNEIQSFLVSDPENTTWADIEAMVKVSFDLN--TIQIKYLDEENEEVSI 60 (87)
T ss_dssp CCEEEEEEETTEEEEEEESCGGGCCHHHHHHHHHHHHTCS--SEEEEEECTTSCEEEE
T ss_pred ceEEEEEEEcCCeeEEEeccCCCCCHHHHHHHHHHHcCCC--ceEEEEEcCCCCEEEE
Confidence 46899999998877888865 999999999999999985 778887 5666553
No 127
>1y8x_B Ubiquitin-activating enzyme E1C; ubiquitin-conjugating enzyme E2 M, ligase; 2.40A {Homo sapiens} SCOP: c.111.1.2 PDB: 3fn1_A
Probab=75.08 E-value=2.7 Score=31.92 Aligned_cols=58 Identities=10% Similarity=0.208 Sum_probs=40.2
Q ss_pred EEEEEcCCChHHHHHHHHHHHcCCCC--CceEEEEC--CcccC--------------CCCCcccCCCCCCcEEEEE
Q 027553 161 KQFRVYADDKFERLFKMYADKVNLDQ--ENLVFCFD--GDKIG--------------PEATPASLEMEDNDIIEVH 218 (222)
Q Consensus 161 v~FkIk~tT~L~KLf~aYaer~gl~~--~~lrF~FD--G~rI~--------------~~~TP~sLgMEDGDiIDV~ 218 (222)
+.+.|.++.+|+.+++..|++-.+.+ -+++...+ |+.|. -+.+-.+||+++|++|-|.
T Consensus 7 ~~l~v~~~~TL~~lid~L~~~p~~qlk~PSltt~~~~~~k~LYmq~pp~Lee~Tr~NL~k~l~eLgl~~g~ei~Vt 82 (98)
T 1y8x_B 7 QNIQFSPSAKLQEVLDYLTNSASLQMKSPAITATLEGKNRTLYMQSVTSIEERTRPNLSKTLKELGLVDGQELAVA 82 (98)
T ss_dssp CCEECCTTCBHHHHHHHHHHCTTCCCSSCEEEEEETTEEEEEECSSCHHHHHHHHHHHHSBSGGGTCCTTCEEEEE
T ss_pred EEEEECCchhHHHHHHHHHhChHhhccCCeeeeecCCCCCeEEEeCcHHHHHHhHhhhhCCHHHhCCCCCCEEEEE
Confidence 56788999999999999999654444 33432221 33322 2445679999999999874
No 128
>3po0_A Small archaeal modifier protein 1; ubiquitin-like protein, protein binding; 1.55A {Haloferax volcanii} PDB: 2l83_A
Probab=74.48 E-value=13 Score=26.21 Aligned_cols=55 Identities=9% Similarity=0.109 Sum_probs=41.4
Q ss_pred eEEEEEcCCChHHHHHHHHHHHcC-C-----C-----CCceEEEECCcccCCCCCcccCCCCCCcEEEEEe
Q 027553 160 LKQFRVYADDKFERLFKMYADKVN-L-----D-----QENLVFCFDGDKIGPEATPASLEMEDNDIIEVHT 219 (222)
Q Consensus 160 ~v~FkIk~tT~L~KLf~aYaer~g-l-----~-----~~~lrF~FDG~rI~~~~TP~sLgMEDGDiIDV~i 219 (222)
+..+.+...+++..|++..+.++. + + ...+++..||+.+.. +| -+.+||.|.++.
T Consensus 19 ~~~~~~~~~~Tv~~ll~~L~~~~p~~~~~~l~~~g~l~~~~~v~VN~~~v~~-~~----~l~~gDeV~i~P 84 (89)
T 3po0_A 19 TVRVDVDGDATVGDALDALVGAHPALESRVFGDDGELYDHINVLRNGEAAAL-GE----ATAAGDELALFP 84 (89)
T ss_dssp EEEEECCTTCBHHHHHHHHHHHCGGGHHHHBCTTSCBCTTSEEEETTEECCT-TS----BCCTTCEEEEEC
T ss_pred eEEEECCCCCcHHHHHHHHHHHCcHHHHHHhccCCcccccEEEEECCEECCC-Cc----ccCCCCEEEEEC
Confidence 356777677899999998888763 1 1 134899999999974 44 499999999874
No 129
>2ylm_A Ubiquitin carboxyl-terminal hydrolase 7; UBL; 2.70A {Homo sapiens}
Probab=73.86 E-value=3.2 Score=39.46 Aligned_cols=36 Identities=8% Similarity=0.223 Sum_probs=33.0
Q ss_pred EEEEEcCCChHHHHHHHHHHHcCCCCCceEEEECCc
Q 027553 161 KQFRVYADDKFERLFKMYADKVNLDQENLVFCFDGD 196 (222)
Q Consensus 161 v~FkIk~tT~L~KLf~aYaer~gl~~~~lrF~FDG~ 196 (222)
..|||.++++|..|+...|+.+|++++.+|||.--.
T Consensus 38 ~~~rv~k~~~~~~l~~~va~~lg~~~~~~RlW~~~~ 73 (530)
T 2ylm_A 38 TVFKVLKNSSLAEFVQSLSQTMGFPQDQIRLWPMQA 73 (530)
T ss_dssp EEEEEETTSBHHHHHHHHHHHHTSCGGGEEEEEEEE
T ss_pred ceEEEcCcCCHHHHHHHHHHHhCcCcccEEEEEEEc
Confidence 479999999999999999999999999999998443
No 130
>2hj1_A Hypothetical protein; structural genomics, PSI, protein structure initiative, NEW research center for structural genomics, nysgxrc; 2.10A {Haemophilus influenzae} SCOP: d.15.3.4
Probab=72.87 E-value=14 Score=27.68 Aligned_cols=67 Identities=15% Similarity=0.119 Sum_probs=50.7
Q ss_pred CcEEEEEEe--CCce--EEEEEcCCChHHHHHHHHHH--Hc-CCCCCceEEEECCcccCCCCCcccCCCCCCcEEEEEe
Q 027553 148 AKIVVSIQD--KGGL--KQFRVYADDKFERLFKMYAD--KV-NLDQENLVFCFDGDKIGPEATPASLEMEDNDIIEVHT 219 (222)
Q Consensus 148 ~kItIkV~~--qdg~--v~FkIk~tT~L~KLf~aYae--r~-gl~~~~lrF~FDG~rI~~~~TP~sLgMEDGDiIDV~i 219 (222)
..|.|.|.+ .+.. +.+.+...+++..+..+..- ++ .++...+.+-.+|+.+. .+--|.+||.|+++.
T Consensus 11 ~~~~v~v~ya~p~rq~~~~~~v~~g~TV~daI~~~gi~~~~peIdl~~~~V~Vng~~v~-----~d~~L~dGDRVEIyr 84 (97)
T 2hj1_A 11 NQINIEIAYAFPERYYLKSFQVDEGITVQTAITQSGILSQFPEIDLSTNKIGIFSRPIK-----LTDVLKEGDRIEIYR 84 (97)
T ss_dssp CEEEEEEEEEETTEEEEEEEEEETTCBHHHHHHHHTHHHHCTTCCTTTSEEEEEECSCC-----TTCBCCTTCEEEECC
T ss_pred ceEEEEEEEeCCCCCEEEEEEcCCCCcHHHHHHHcCCCccCCcccccccEEEEcCEECC-----CCccCCCCCEEEEEe
Confidence 467777764 4433 46788899999999988753 43 67778889999999986 333499999999974
No 131
>2ylm_A Ubiquitin carboxyl-terminal hydrolase 7; UBL; 2.70A {Homo sapiens}
Probab=69.67 E-value=3 Score=39.64 Aligned_cols=74 Identities=15% Similarity=0.256 Sum_probs=56.0
Q ss_pred CCCcEEEEEE--eCCc-e---E-EEEEcCCChHHHHHHHHHHHcCCCCCceEEEEC------CcccC-CCCCcccC--CC
Q 027553 146 ERAKIVVSIQ--DKGG-L---K-QFRVYADDKFERLFKMYADKVNLDQENLVFCFD------GDKIG-PEATPASL--EM 209 (222)
Q Consensus 146 ~~~kItIkV~--~qdg-~---v-~FkIk~tT~L~KLf~aYaer~gl~~~~lrF~FD------G~rI~-~~~TP~sL--gM 209 (222)
....|.|-+. +... . + ++-|.+++++..|....++++|+++++=-.+|. .+.|. .+.|-.+. +|
T Consensus 127 ~~~~iLlFlK~yDp~~q~L~~~G~~~v~~~~kv~~l~~~i~~~~g~p~dt~l~lyEEi~~~~ie~l~~~~~t~~~~~~eL 206 (530)
T 2ylm_A 127 KDHDVMLFLKMYDPKTRSLNYCGHIYTPISCKIRDLLPVMCDRAGFIQDTSLILYEEVKPNLTERIQDYDVSLDKALDEL 206 (530)
T ss_dssp TTTEEEEEEEEEETTTTEEEEEEEEEEETTCBGGGTHHHHHHHHTCCTTCCEEEEEEEETTEEEECCCSSSBHHHHSTTC
T ss_pred CCCcEEEEEEeeCCCCCEEEEEEEEEECCCCCHHHHHHHHHHHcCCCCCCceEEEEecCCCceeEcccccccHHHHHhcc
Confidence 4455666555 4433 2 2 789999999999999999999999865444454 55677 78899999 99
Q ss_pred CCCcEEEEEe
Q 027553 210 EDNDIIEVHT 219 (222)
Q Consensus 210 EDGDiIDV~i 219 (222)
.+||||-+..
T Consensus 207 ~~GdII~fQ~ 216 (530)
T 2ylm_A 207 MDGDIIVFQK 216 (530)
T ss_dssp CTTEEEEEEE
T ss_pred cCCCEEEEEe
Confidence 9999886654
No 132
>1vjk_A Molybdopterin converting factor, subunit 1; structural genomics, PSI, protein structure INI southeast collaboratory for structural genomics; 1.51A {Pyrococcus furiosus} SCOP: d.15.3.1
Probab=69.44 E-value=26 Score=25.34 Aligned_cols=55 Identities=11% Similarity=0.280 Sum_probs=41.6
Q ss_pred eEEEEEcCCChHHHHHHHHHHHcC-C----------CCCceEEEECCcccCCCCCcccCCCCCCcEEEEEe
Q 027553 160 LKQFRVYADDKFERLFKMYADKVN-L----------DQENLVFCFDGDKIGPEATPASLEMEDNDIIEVHT 219 (222)
Q Consensus 160 ~v~FkIk~tT~L~KLf~aYaer~g-l----------~~~~lrF~FDG~rI~~~~TP~sLgMEDGDiIDV~i 219 (222)
...+.+...+++..|++..+.++. + -...+.+..||+.+.. +--+.+||.|.++.
T Consensus 28 ~~~~e~~~~~Tv~~Ll~~L~~~~p~l~~~l~~~~g~~~~~v~v~VNg~~v~~-----~~~L~dGDeV~i~p 93 (98)
T 1vjk_A 28 EEEIELPEGARVRDLIEEIKKRHEKFKEEVFGEGYDEDADVNIAVNGRYVSW-----DEELKDGDVVGVFP 93 (98)
T ss_dssp EEEEEECTTCBHHHHHHHHHHHCGGGGGSCBCSSSCTTSSBEEEETTBCCCT-----TCBCCTTCEEEEES
T ss_pred eEEEECCCCCCHHHHHHHHHhHChhHHHHhhccccccCCcEEEEECCEECCC-----CCCCCCCCEEEEEC
Confidence 356777778899999998887652 1 1356889999999863 34599999999874
No 133
>3w1s_C Ubiquitin-like protein ATG12; ubiquitin fold, E3-like, ATG3 binding, isopeptide bond betwe Gly186 and ATG5 Lys149, ligase; 2.60A {Saccharomyces cerevisiae S288C}
Probab=68.59 E-value=14 Score=27.55 Aligned_cols=60 Identities=12% Similarity=0.284 Sum_probs=44.1
Q ss_pred CCCcEEEEEEeCCce-----EEEEEcCCChHHHHHHHHHHHcCCCCCceEEEECCccc-CCCCCcccC
Q 027553 146 ERAKIVVSIQDKGGL-----KQFRVYADDKFERLFKMYADKVNLDQENLVFCFDGDKI-GPEATPASL 207 (222)
Q Consensus 146 ~~~kItIkV~~qdg~-----v~FkIk~tT~L~KLf~aYaer~gl~~~~lrF~FDG~rI-~~~~TP~sL 207 (222)
...+|+|+++.-++. ..|.|..+.+|+.++..-.+++++ +++=++.|+... ++++|..+|
T Consensus 5 ~~~Kv~vrfk~~g~~P~l~k~KflV~~~~t~~~~v~~lRkrL~l--~alFlyVNn~f~Ps~d~~~~~L 70 (91)
T 3w1s_C 5 NIQKIQIKFQPIGSIGQLKPSVCKISMSQSFAMVILFLKRRLKM--DHVYCYINNSFAPSPQQNIGEL 70 (91)
T ss_dssp -CCEEEEEEEECCC-------EEEEETTSBHHHHHHHHHHHHTC--SCCEEEETTTBCCCTTSBHHHH
T ss_pred CCCeEEEEEEecCCCCcccccEEEcCCCCCHHHHHHHHHHhhCC--ceEEEEECCccCCCcccHHHHH
Confidence 456899999876652 379999999999999999999998 566444476543 345666554
No 134
>2g1e_A Hypothetical protein TA0895; MOAD, molybdopterin, transferase; NMR {Thermoplasma acidophilum} PDB: 2k22_A
Probab=67.28 E-value=25 Score=24.49 Aligned_cols=57 Identities=16% Similarity=0.245 Sum_probs=39.2
Q ss_pred EEEEcCCChHHHHHHHHHHHcC------C-----CCCceEEEECCcccCCCCCcccCCCCCCcEEEEEe
Q 027553 162 QFRVYADDKFERLFKMYADKVN------L-----DQENLVFCFDGDKIGPEATPASLEMEDNDIIEVHT 219 (222)
Q Consensus 162 ~FkIk~tT~L~KLf~aYaer~g------l-----~~~~lrF~FDG~rI~~~~TP~sLgMEDGDiIDV~i 219 (222)
.+.+....++..|++..+.++. + -...+.+..||+.+... .-.+--+.+||.|.++.
T Consensus 18 ~~~~~~~~tv~~ll~~l~~~~p~~~~~~l~~~~g~~~~v~v~vN~~~v~~~-~~~~~~l~~gD~V~i~p 85 (90)
T 2g1e_A 18 EETFNGISKISELLERLKVEYGSEFTKQMYDGNNLFKNVIILVNGNNITSM-KGLDTEIKDDDKIDLFP 85 (90)
T ss_dssp EEEESSCCBHHHHHHHHHHHSCHHHHHHHCCSSCSTTTCEEEESSSBGGGT-CSSSCBCCTTCEEEEEC
T ss_pred EEEcCCCCcHHHHHHHHHHHCcchhhhccccccCcCcceEEEECCEEcccc-CCCCcCCCCCCEEEEeC
Confidence 3455556789999998887752 1 12568899999988632 11223489999999874
No 135
>1ef1_A Moesin; membrane, FERM domain, tail domain, membrane protein; 1.90A {Homo sapiens} SCOP: a.11.2.1 b.55.1.5 d.15.1.4 PDB: 1sgh_A 1j19_A 2emt_A 2ems_A 2d10_A 2d11_A 2yvc_A 2d2q_A 2zpy_A 1gc7_A 1gc6_A 1ni2_A
Probab=66.57 E-value=34 Score=28.84 Aligned_cols=44 Identities=14% Similarity=0.215 Sum_probs=38.2
Q ss_pred EEEEEEeCCceEEEEEcCCChHHHHHHHHHHHcCCCC-CceEEEE
Q 027553 150 IVVSIQDKGGLKQFRVYADDKFERLFKMYADKVNLDQ-ENLVFCF 193 (222)
Q Consensus 150 ItIkV~~qdg~v~FkIk~tT~L~KLf~aYaer~gl~~-~~lrF~F 193 (222)
|.|+|.-.||.+.|.|..+++-+.|++.-|+++|+.. .-|-+.|
T Consensus 2 i~~~V~l~d~~~~~~v~~~tt~~el~~~v~~~l~L~e~~~FgL~~ 46 (294)
T 1ef1_A 2 ISVRVTTMDAELEFAIQPNTTGKQLFDQVVKTIGLREVWFFGLQY 46 (294)
T ss_dssp EEEEEEETTEEEEEEECTTCBHHHHHHHHHHHHTCCCGGGEEEEE
T ss_pred EEEEEEECCceEEEEECCCCcHHHHHHHHHHHcCCCCcceeEEEE
Confidence 7888988898888999999999999999999999964 5566665
No 136
>1f0z_A THis protein; ubiquitin fold, transport protein; NMR {Escherichia coli} SCOP: d.15.3.2 PDB: 1zud_2
Probab=65.42 E-value=8.5 Score=26.04 Aligned_cols=52 Identities=15% Similarity=0.185 Sum_probs=37.7
Q ss_pred EEEcCCChHHHHHHHHHHHcCCCCCceEEEECCcccCCCCCcccCCCCCCcEEEEEe
Q 027553 163 FRVYADDKFERLFKMYADKVNLDQENLVFCFDGDKIGPEATPASLEMEDNDIIEVHT 219 (222)
Q Consensus 163 FkIk~tT~L~KLf~aYaer~gl~~~~lrF~FDG~rI~~~~TP~sLgMEDGDiIDV~i 219 (222)
+.+...+++..|.+.. +++...+.+..||+.+... .-.+--+.+||.|+++.
T Consensus 10 ~~~~~~~tv~~ll~~l----~~~~~~v~vavN~~~v~~~-~~~~~~L~~gD~v~i~~ 61 (66)
T 1f0z_A 10 MQCAAGQTVHELLEQL----DQRQAGAALAINQQIVPRE-QWAQHIVQDGDQILLFQ 61 (66)
T ss_dssp ECCCTTCCHHHHHHHH----TCCCSSEEEEETTEEECHH-HHTTCCCCTTEEECEEE
T ss_pred EEcCCCCcHHHHHHHc----CCCCCCEEEEECCEECCch-hcCCcCCCCCCEEEEEe
Confidence 4445667888887754 6788899999999999742 11123489999999875
No 137
>1tyg_B YJBS; alpha beta barrel, protein-protein complex, THis, BIOS protein; 3.15A {Bacillus subtilis} SCOP: d.15.3.2
Probab=64.56 E-value=9.8 Score=27.94 Aligned_cols=53 Identities=21% Similarity=0.329 Sum_probs=39.2
Q ss_pred EEEEcCC-ChHHHHHHHHHHHcCCCCCceEEEECCcccCCCCCcccCCCCCCcEEEEEe
Q 027553 162 QFRVYAD-DKFERLFKMYADKVNLDQENLVFCFDGDKIGPEATPASLEMEDNDIIEVHT 219 (222)
Q Consensus 162 ~FkIk~t-T~L~KLf~aYaer~gl~~~~lrF~FDG~rI~~~~TP~sLgMEDGDiIDV~i 219 (222)
.+.+... +++..|++. +++++..+.+..||+.|... .-.+--|.+||.|+++.
T Consensus 29 ~~el~~~~~Tv~dLL~~----L~~~~~~vaVavNg~iV~~~-~~~~~~L~dGD~Vei~~ 82 (87)
T 1tyg_B 29 DVKWKKDTGTIQDLLAS----YQLENKIVIVERNKEIIGKE-RYHEVELCDRDVIEIVH 82 (87)
T ss_dssp EECCSSSCCBHHHHHHH----TTCTTSCCEEEETTEEECGG-GTTTSBCCSSSEEEEEE
T ss_pred EEECCCCCCcHHHHHHH----hCCCCCCEEEEECCEECChh-hcCCcCCCCCCEEEEEc
Confidence 3445665 788888764 47888899999999999643 22234599999999975
No 138
>2cu3_A Unknown function protein; thermus thermophilus HB8, structural genomics, riken structu genomics/proteomics initiative, RSGI, NPPSFA; 1.70A {Thermus thermophilus} SCOP: d.15.3.2 PDB: 2htm_E
Probab=64.03 E-value=11 Score=25.34 Aligned_cols=48 Identities=8% Similarity=0.220 Sum_probs=36.0
Q ss_pred CCChHHHHHHHHHHHcCCCCCceEEEECCcccCCCCCcccCCCCCCcEEEEEe
Q 027553 167 ADDKFERLFKMYADKVNLDQENLVFCFDGDKIGPEATPASLEMEDNDIIEVHT 219 (222)
Q Consensus 167 ~tT~L~KLf~aYaer~gl~~~~lrF~FDG~rI~~~~TP~sLgMEDGDiIDV~i 219 (222)
..+++..|.+.. ++++..+.+..||+.+... .=.+.-+.+||.|+++.
T Consensus 12 ~~~tv~~ll~~l----~~~~~~v~vavN~~~v~~~-~~~~~~L~dgD~v~i~~ 59 (64)
T 2cu3_A 12 EGKTLKEVLEEM----GVELKGVAVLLNEEAFLGL-EVPDRPLRDGDVVEVVA 59 (64)
T ss_dssp TTCCHHHHHHHH----TBCGGGEEEEETTEEEEGG-GCCCCCCCTTCEEEEEE
T ss_pred CCCcHHHHHHHc----CCCCCcEEEEECCEECCcc-ccCCcCCCCCCEEEEEe
Confidence 567788887654 6778889999999998753 11223589999999875
No 139
>4gdk_A Ubiquitin-like protein ATG12; protein-protein conjugate, protein-protein complex, ubiquiti protein, E3 ligase, ubiquitin-like fold; 2.70A {Homo sapiens} PDB: 4gdl_A
Probab=63.29 E-value=13 Score=27.65 Aligned_cols=71 Identities=15% Similarity=0.282 Sum_probs=51.4
Q ss_pred CCcEEEEEEeCCce-----EEEEEcCCChHHHHHHHHHHHcCCCCCceEEEE-CCccc-CCCCCcccC----CCCCCcEE
Q 027553 147 RAKIVVSIQDKGGL-----KQFRVYADDKFERLFKMYADKVNLDQENLVFCF-DGDKI-GPEATPASL----EMEDNDII 215 (222)
Q Consensus 147 ~~kItIkV~~qdg~-----v~FkIk~tT~L~KLf~aYaer~gl~~~~lrF~F-DG~rI-~~~~TP~sL----gMEDGDiI 215 (222)
..+|+|+++.-+.. ..|.|..+.+|..++..-.++++++++.--|+| |+..+ ++++|..+| . +||-.+
T Consensus 3 ~~Kv~v~fk~~g~~P~l~k~KflVp~~~tv~~~~~~lRkrL~l~~~~alFlyVnn~~~P~~d~~~~~Ly~~~k-~DGfLy 81 (91)
T 4gdk_A 3 KKKIDILLKAVGDTPIMKTKKWAVERTRTIQGLIDFIKKFLKLVASEQLFIYVNQSFAPSPDQEVGTLYECFG-SDGKLV 81 (91)
T ss_dssp -CEEEEEEEECSSSCCCSCCEEEEETTCBHHHHHHHHHHHTTCCSSSCCEEEETTTBCCCTTCBHHHHHHHHC-BTTEEE
T ss_pred CceEEEEEEecCCCCcccccEEEcCCCCCHHHHHHHHHHHhCCCCCCeEEEEECCccCCChhhHHHHHHHHhC-CCCEEE
Confidence 46899999875542 389999999999999999999999886555555 65443 346676654 5 666655
Q ss_pred EEE
Q 027553 216 EVH 218 (222)
Q Consensus 216 DV~ 218 (222)
-.+
T Consensus 82 v~Y 84 (91)
T 4gdk_A 82 LHY 84 (91)
T ss_dssp EEE
T ss_pred EEE
Confidence 444
No 140
>1h4r_A Merlin; FERM, neurofibromatosis, NF2, structural protein, cytoskeleton, anti-oncogene; 1.8A {Homo sapiens} SCOP: a.11.2.1 b.55.1.5 d.15.1.4 PDB: 1isn_A 3u8z_A
Probab=62.55 E-value=44 Score=28.52 Aligned_cols=62 Identities=11% Similarity=0.085 Sum_probs=45.7
Q ss_pred CCCcEEEEEEeCCceEEEEEcCCChHHHHHHHHHHHcCCCC-CceEEEE--CCcc--cCCCCCcccC
Q 027553 146 ERAKIVVSIQDKGGLKQFRVYADDKFERLFKMYADKVNLDQ-ENLVFCF--DGDK--IGPEATPASL 207 (222)
Q Consensus 146 ~~~kItIkV~~qdg~v~FkIk~tT~L~KLf~aYaer~gl~~-~~lrF~F--DG~r--I~~~~TP~sL 207 (222)
.+..|.++|.-.||.+.|.|..+++-+.|++.-|.++|+.- .-|-+.| +|.. |.++.+..+.
T Consensus 19 ~~~~~~~~V~lldg~~~~~v~~~t~~~el~~~v~~~l~L~e~~~FgL~~~~~~~~~wL~~~~~i~~q 85 (314)
T 1h4r_A 19 QPKTFTVRIVTMDAEMEFNCEMKWKGKDLFDLVCRTLGLRETWFFGLQYTIKDTVAWLKMDKKVLDH 85 (314)
T ss_dssp --CEEEEEEECSSCEEEEEEETTCBHHHHHHHHHHHHTCCCGGGEEEEEEETTEEEECCTTSBGGGS
T ss_pred CCCeeEEEEEeCCceEEEEeCCCCcHHHHHHHHHHHhCCCCCccceEEEEeCCcCeeCCCccCHHHc
Confidence 36779999998888888999999999999999999999964 4455554 4543 4444444443
No 141
>1wz3_A Autophagy 12B, ATG12B, APG12B; ubiquitin-fold, plant protein; 1.80A {Arabidopsis thaliana} SCOP: d.15.1.7
Probab=62.45 E-value=8.8 Score=28.84 Aligned_cols=60 Identities=25% Similarity=0.459 Sum_probs=43.5
Q ss_pred CCCcEEEEEEeCCce-----EEEEEcCCChHHHHHHHHHHHcCCCCCceEEEECC-cccCCCCCcccC
Q 027553 146 ERAKIVVSIQDKGGL-----KQFRVYADDKFERLFKMYADKVNLDQENLVFCFDG-DKIGPEATPASL 207 (222)
Q Consensus 146 ~~~kItIkV~~qdg~-----v~FkIk~tT~L~KLf~aYaer~gl~~~~lrF~FDG-~rI~~~~TP~sL 207 (222)
+..+|+|+++.-++. ..|.|..+.+|..++..-.++++++ ++=++.++ -.-..++|..+|
T Consensus 10 ~~~KV~V~~~~~~~~P~l~k~KflV~~~~t~~~~~~~lRkrL~l~--alFlyvn~~~~Ps~d~~m~~L 75 (96)
T 1wz3_A 10 SVQKIVVHLRATGGAPILKQSKFKVSGSDKFANVIDFLRRQLHSD--SLFVYVNSAFSPNPDESVIDL 75 (96)
T ss_dssp --CEEEEEEEECTTCCCCSCCEEEEETTSBTHHHHHHHHHHHTCS--SCEEEEEEEECCCTTSBHHHH
T ss_pred CCCeEEEEEEECCCCCcccccEEEeCCCCcHHHHHHHHHHhcCCc--eEEEEECCcccCChhhHHHHH
Confidence 467999999876552 3899999999999999999999988 55444444 233446666655
No 142
>2q5w_D Molybdopterin converting factor, subunit 1; MOCO, MPT synthase, MOAD, MOAE, transferase, molybdenum cofactor biosynthesis; 2.00A {Staphylococcus aureus} PDB: 2qie_B*
Probab=62.16 E-value=8 Score=26.44 Aligned_cols=53 Identities=6% Similarity=0.073 Sum_probs=38.3
Q ss_pred EEEEEcCCChHHHHHHHHHHHcCCCCCce--EEEECCcccCCCCCcccCCCCCCcEEEEEe
Q 027553 161 KQFRVYADDKFERLFKMYADKVNLDQENL--VFCFDGDKIGPEATPASLEMEDNDIIEVHT 219 (222)
Q Consensus 161 v~FkIk~tT~L~KLf~aYaer~gl~~~~l--rF~FDG~rI~~~~TP~sLgMEDGDiIDV~i 219 (222)
..+.+....++..|.+....++. ....+ .+..||+.+..+ --+.+||.|+++.
T Consensus 18 ~~~~~~~~~tv~~ll~~l~~~~p-~~~~v~~~v~vNg~~v~~~-----~~L~~gD~V~i~p 72 (77)
T 2q5w_D 18 EDIVLEQALTVQQFEDLLFERYP-QINNKKFQVAVNEEFVQKS-----DFIQPNDTVALIP 72 (77)
T ss_dssp EECCCSSCEEHHHHHHHHHHHCG-GGTTCCCEEEETTEEECTT-----SEECTTCEEEEEC
T ss_pred EEEECCCCCCHHHHHHHHHHHCc-chhcceEEEEECCEECCCC-----CCcCCCCEEEEEC
Confidence 34555566788899888777642 11334 899999999753 4699999999874
No 143
>1fm0_D Molybdopterin convertin factor, subunit 1; molybdenum cofactor biosynthesis, transferase; 1.45A {Escherichia coli} SCOP: d.15.3.1 PDB: 1fma_D 1jw9_D 1jwa_D* 1jwb_D* 3bii_D 1nvi_D
Probab=61.16 E-value=14 Score=25.31 Aligned_cols=49 Identities=14% Similarity=0.156 Sum_probs=35.6
Q ss_pred cCCChHHHHHHHHHHHcC-----CCCCceEEEECCcccCCCCCcccCCCCCCcEEEEEe
Q 027553 166 YADDKFERLFKMYADKVN-----LDQENLVFCFDGDKIGPEATPASLEMEDNDIIEVHT 219 (222)
Q Consensus 166 k~tT~L~KLf~aYaer~g-----l~~~~lrF~FDG~rI~~~~TP~sLgMEDGDiIDV~i 219 (222)
...+++..|++..+.++. +....+.+..||+.+. . +--+.+||.|.++.
T Consensus 23 ~~~~tv~~ll~~L~~~~p~~~~~l~~~~~~v~vN~~~v~-~----~~~l~~gD~V~i~P 76 (81)
T 1fm0_D 23 ADFPTVEALRQHMAAQSDRWALALEDGKLLAAVNQTLVS-F----DHPLTDGDEVAFFP 76 (81)
T ss_dssp SCCSBHHHHHHHHHTTCHHHHHHHCCTTCEEEETTEECC-T----TCBCCTTCEEEEEC
T ss_pred CCCCCHHHHHHHHHHHChhHHHHhcCCCEEEEECCEECC-C----CCCCCCCCEEEEeC
Confidence 456788888888775532 2345678999999885 2 34689999999874
No 144
>2kl0_A Putative thiamin biosynthesis THis; structural genomics, PSI-2, protein structure initiative, N structural genomics consortium, NESG; NMR {Rhodopseudomonas palustris} PDB: 2lek_A
Probab=60.10 E-value=7.1 Score=27.52 Aligned_cols=48 Identities=13% Similarity=0.165 Sum_probs=37.2
Q ss_pred CCChHHHHHHHHHHHcCCCCCceEEEECCcccCCCCCcccCCCCCCcEEEEEe
Q 027553 167 ADDKFERLFKMYADKVNLDQENLVFCFDGDKIGPEATPASLEMEDNDIIEVHT 219 (222)
Q Consensus 167 ~tT~L~KLf~aYaer~gl~~~~lrF~FDG~rI~~~~TP~sLgMEDGDiIDV~i 219 (222)
..+++..|.. .+|+++..+...+||.-|.. ..-.+--|.+||.|+++.
T Consensus 13 ~~~Tl~~LL~----~l~~~~~~vAV~vNg~iVpr-~~~~~~~L~dGD~veIv~ 60 (73)
T 2kl0_A 13 QSASVAALMT----ELDCTGGHFAVALNYDVVPR-GKWDETPVTAGDEIEILT 60 (73)
T ss_dssp CCSBHHHHHH----HTTCCSSSCEEEESSSEECH-HHHTTCBCCTTCEEEEEC
T ss_pred CCCcHHHHHH----HcCCCCCcEEEEECCEECCh-HHcCcccCCCCCEEEEEc
Confidence 5577777765 67899999999999999864 333445789999999874
No 145
>3ge3_C Toluene-4-monooxygenase system protein B; DIIRON hydroxylase, effector protein, T201A, aromatic hydrocarbons catabolism, FAD, flavoprotein; 1.52A {Pseudomonas mendocina} SCOP: d.15.12.0 PDB: 3dhh_C* 3dhg_C* 3dhi_C 3ge8_C 3i5j_C 3i63_C 3q14_C 3q2a_C* 3q3m_C* 3q3n_C* 3q3o_C* 3rmk_C* 3ri7_C*
Probab=58.67 E-value=54 Score=24.40 Aligned_cols=59 Identities=14% Similarity=0.111 Sum_probs=50.7
Q ss_pred EEEEEcCCChHHHHHHHHHHHc-CC----CCCceEEEECCcc--cCCCCCcccCCCCCCcEEEEEe
Q 027553 161 KQFRVYADDKFERLFKMYADKV-NL----DQENLVFCFDGDK--IGPEATPASLEMEDNDIIEVHT 219 (222)
Q Consensus 161 v~FkIk~tT~L~KLf~aYaer~-gl----~~~~lrF~FDG~r--I~~~~TP~sLgMEDGDiIDV~i 219 (222)
.-+-|-...+|..+-.+.|... |. .+..+|...+|.. +..+.|..+.|+.-.|.|+|+.
T Consensus 17 ~Lv~VDt~dtmdqVA~k~A~h~VGrrv~p~pg~lrVr~~G~~~~~Pr~mtVaeaGl~Pme~vev~~ 82 (84)
T 3ge3_C 17 QLVVVDLNDSMDQVAEKVAYHCVNRRVAPREGVMRVRKHRSTELFPRDMTIAESGLNPTEVIDVVF 82 (84)
T ss_dssp EEEEEETTCBHHHHHHHHHHTTBTTTBCCCSSCEEEEETTCSCBCCTTCBHHHHCCCTTCEEEEEE
T ss_pred EEEEecCCCcHHHHHHHHhhhhcceeeCCCCCcEEEEECCCcccCCCCCEeeccCCCcceEEEEEE
Confidence 5688999999999998888632 33 2368999999999 9999999999999999999975
No 146
>2kc2_A Talin-1, F1; FERM, adhesion, cell membrane, cell projection, cytoplasm, cytoskeleton, membrane, phosphoprotein, structural protein; NMR {Mus musculus}
Probab=55.70 E-value=17 Score=28.71 Aligned_cols=42 Identities=10% Similarity=0.191 Sum_probs=34.5
Q ss_pred EEEEEeCCce-EEEEEcCCChHHHHHHHHHHHcCCCCC-ceEEE
Q 027553 151 VVSIQDKGGL-KQFRVYADDKFERLFKMYADKVNLDQE-NLVFC 192 (222)
Q Consensus 151 tIkV~~qdg~-v~FkIk~tT~L~KLf~aYaer~gl~~~-~lrF~ 192 (222)
.|+|+=.||. ..++|..+.+...++..-|.++|+... .+.|.
T Consensus 13 ~LkV~llDg~~ktl~VD~S~~V~~lv~~Ic~kigI~n~~ey~L~ 56 (128)
T 2kc2_A 13 PLKIRMLDGTVKTIMVDDSKTVTDMLMTICARIGITNHDEYSLV 56 (128)
T ss_dssp EEEEECTTSCEEEEEEEECSSHHHHHHHHHHHHTCCCCSSEEEE
T ss_pred cEEEEcCCCCEEEEEeCCCcCHHHHHHHHHHHhCCCCccccccc
Confidence 5777777887 699999999999999999999999743 34443
No 147
>1q1o_A Cell division control protein 24; PB1 domain, PCCR, PC motif, OPCA motif, yeast, cell polarity, protein-protein interaction; NMR {Saccharomyces cerevisiae} SCOP: d.15.2.2 PDB: 2kfj_A 2kfk_B
Probab=54.31 E-value=19 Score=27.34 Aligned_cols=45 Identities=13% Similarity=0.115 Sum_probs=35.1
Q ss_pred cEEEEEEeCC-------c-eEEEEEcCCChHHHHHHHHHHHcCCCC-----CceEEEE
Q 027553 149 KIVVSIQDKG-------G-LKQFRVYADDKFERLFKMYADKVNLDQ-----ENLVFCF 193 (222)
Q Consensus 149 kItIkV~~qd-------g-~v~FkIk~tT~L~KLf~aYaer~gl~~-----~~lrF~F 193 (222)
.|.|+|...+ + .+.+.|..+..|..|+..-.+++++.. ..+++.|
T Consensus 5 sikVKv~y~~~~~~~~~~d~~~i~V~~~i~f~~L~~kI~~Kl~~~~~~~i~~~~klkY 62 (98)
T 1q1o_A 5 SILFRISYNNNSNNTSSSEIFTLLVEKVWNFDDLIMAINSKISNTHNNNISPITKIKY 62 (98)
T ss_dssp CEEEEEEECSSCSSCCCCEEEEEEECTTCCHHHHHHHHHHHHHHHCSSCCCCCCCEEE
T ss_pred cEEEEEEecCcccccccCcEEEEEecCCCCHHHHHHHHHHHHcCCccccccceeEEEE
Confidence 4888888763 2 378999999999999999999998741 3356666
No 148
>3pvl_A Myosin VIIA isoform 1; protein complex, novel folding, protein cargo binding, cargo proteins, motor protein-protein transport complex; 2.80A {Mus musculus}
Probab=52.38 E-value=61 Score=31.50 Aligned_cols=78 Identities=17% Similarity=0.208 Sum_probs=54.0
Q ss_pred HHHHHHHHHHHHHHhhccCCchhhhhhhccCCCCcCCCCcEEEEEEeCCce-EEEEEcCCChHHHHHHHHHHHcCCC-CC
Q 027553 110 ADDVIRAVEESVKRKLDSSMPAALEAESEKVSKPAIERAKIVVSIQDKGGL-KQFRVYADDKFERLFKMYADKVNLD-QE 187 (222)
Q Consensus 110 ~~~~l~~v~E~~k~~~~~~~~~e~~~~~~~~~~p~~~~~kItIkV~~qdg~-v~FkIk~tT~L~KLf~aYaer~gl~-~~ 187 (222)
|.-+++++..+.+.+--.-.|+..|+.+-. .+..|.++|.-.||. ..|.|...++-+-|++..|.++|+. ..
T Consensus 230 a~~c~~~L~rt~~~g~R~~~Ps~~Ei~Ai~------~~~~i~~~V~llDgt~~~~~vds~Tt~~ell~~V~~~LgL~e~~ 303 (655)
T 3pvl_A 230 APYCEERLRRTFVNGTRTQPPSWLELQATK------SKKPIMLPVTFMDGTTKTLLTDSATTARELCNALADKISLKDRF 303 (655)
T ss_dssp HHHHHHHHHHHHHHCCCSSCCCHHHHHHHH------HTCCEEEEEEETTSCEEEEEECTTCBHHHHHHHHHHHTTCSSCT
T ss_pred HHHHHHHHHHhhcCCCCCcCCCHHHHHHHH------cCCceEEEEEecCCceEEEEEccCCcHHHHHHHHHHHcCCcccc
Confidence 455566665555443333334444444422 234688999988987 7999999999999999999999995 46
Q ss_pred ceEEEE
Q 027553 188 NLVFCF 193 (222)
Q Consensus 188 ~lrF~F 193 (222)
.|-+.|
T Consensus 304 ~FgL~~ 309 (655)
T 3pvl_A 304 GFSLYI 309 (655)
T ss_dssp TEEEEE
T ss_pred cceeEE
Confidence 666666
No 149
>1rws_A Hypothetical protein PF1061; residual dipolar couplings, structural genomics, unknown FUN; NMR {Pyrococcus furiosus} SCOP: d.15.3.2 PDB: 1sf0_A
Probab=52.17 E-value=6.4 Score=27.59 Aligned_cols=48 Identities=19% Similarity=0.305 Sum_probs=35.6
Q ss_pred EEEcCCChHHHHHHHHHHHcCCCCCceEEEECCcccCCCCCcccCCCCCCcEEEEEe
Q 027553 163 FRVYADDKFERLFKMYADKVNLDQENLVFCFDGDKIGPEATPASLEMEDNDIIEVHT 219 (222)
Q Consensus 163 FkIk~tT~L~KLf~aYaer~gl~~~~lrF~FDG~rI~~~~TP~sLgMEDGDiIDV~i 219 (222)
+.+...+++..|.. .++++...+.+..||+.+..+ --+.+||.|+++.
T Consensus 25 ~~~~~~~Tv~dLl~----~L~~~~~~v~VavNg~~v~~~-----~~L~dGD~V~i~p 72 (77)
T 1rws_A 25 IEWREGMKVRDILR----AVGFNTESAIAKVNGKVVLED-----DEVKDGDFVEVIP 72 (77)
T ss_dssp CCCCSSCCHHHHHH----TTTCSSCSSCEEETTEEECSS-----SCCCSSCCCBCSC
T ss_pred EECCCCCcHHHHHH----HhCCCCcCEEEEECCEECCCC-----CCcCCCCEEEEEc
Confidence 34455567777665 446778888999999999754 4699999998764
No 150
>1ip9_A BEM1 protein; ubiquitin alpha/beta roll, signaling protein; NMR {Saccharomyces cerevisiae} SCOP: d.15.2.2 PDB: 1ipg_A 2kfk_A
Probab=50.21 E-value=75 Score=23.60 Aligned_cols=48 Identities=13% Similarity=0.074 Sum_probs=40.3
Q ss_pred CcEEEEEEeCCceEEEEEcCCChHHHHHHHHHHHcCCCCCceEEEECCc
Q 027553 148 AKIVVSIQDKGGLKQFRVYADDKFERLFKMYADKVNLDQENLVFCFDGD 196 (222)
Q Consensus 148 ~kItIkV~~qdg~v~FkIk~tT~L~KLf~aYaer~gl~~~~lrF~FDG~ 196 (222)
..+.|++-.++.-+-++|..+..|.-|.+.-+.|..+. +-+.|.|.++
T Consensus 11 ~~~KVK~yy~DDIiAIrvP~di~~~~L~dKi~~RLk~~-~~~l~~ykde 58 (85)
T 1ip9_A 11 KTTKIKFYYKDDIFALMLKGDTTYKELRSKIAPRIDTD-NFKLQTKLFD 58 (85)
T ss_dssp CCEEEEECBTTCCEEEEECSCCCHHHHHHHHHHHHTSS-CEEEEECCSS
T ss_pred CceEEEEEecCcEEEEECCCCCCHHHHHHHHHHHhccc-ceEEEEecCC
Confidence 67899999988768999999999999999999999984 4455555655
No 151
>2i1j_A Moesin; FERM, coiled-coil, C-ermad, ERM, radixin, ezrin, MER actin binding, masking, regulation, SELF-inhibition, cell A membrane protein; 2.10A {Spodoptera frugiperda} PDB: 2i1k_A 1e5w_A
Probab=50.00 E-value=32 Score=32.96 Aligned_cols=46 Identities=11% Similarity=0.165 Sum_probs=39.6
Q ss_pred CcEEEEEEeCCceEEEEEcCCChHHHHHHHHHHHcCCCC-CceEEEE
Q 027553 148 AKIVVSIQDKGGLKQFRVYADDKFERLFKMYADKVNLDQ-ENLVFCF 193 (222)
Q Consensus 148 ~kItIkV~~qdg~v~FkIk~tT~L~KLf~aYaer~gl~~-~~lrF~F 193 (222)
..|.++|.-.||.+.|.|..+++-.-|++.-|.++|+.- .-|-|.|
T Consensus 3 k~i~v~V~llDgt~e~~vd~~tt~~ell~~V~~~LgL~e~~~FGL~~ 49 (575)
T 2i1j_A 3 KSMNVRVTTMDAELEFAIQQTTTGKQLFDQVVKTIGLREVWFFGLQY 49 (575)
T ss_dssp CEEEEEEECSSCEEEEEEETTCBHHHHHHHHHHHHTCCCGGGEEEEE
T ss_pred ceEEEEEEeCCCeEEEEECCCCCHHHHHHHHHHHcCCCCccceeEEE
Confidence 468899998898888999999999999999999999954 4566665
No 152
>3dwg_C 9.5 kDa culture filtrate antigen CFP10A; sulfur carrier protein complex, beta-grAsp fold, amino-acid biosynthesis; HET: PLP; 1.53A {Mycobacterium tuberculosis} PDB: 3dwm_A
Probab=47.15 E-value=38 Score=23.96 Aligned_cols=52 Identities=8% Similarity=0.147 Sum_probs=36.6
Q ss_pred CCChHHHHHHHHHHHcCC------C-------CCceEEEECCcccCCCCCcccCCCCCCcEEEEEe
Q 027553 167 ADDKFERLFKMYADKVNL------D-------QENLVFCFDGDKIGPEATPASLEMEDNDIIEVHT 219 (222)
Q Consensus 167 ~tT~L~KLf~aYaer~gl------~-------~~~lrF~FDG~rI~~~~TP~sLgMEDGDiIDV~i 219 (222)
..+++..|++.-+.++.- + ...+++..||+.+....- .+--+.+||.|.++.
T Consensus 24 ~~~Tv~~ll~~L~~~~p~l~~~l~~~~~~g~~~~~~~v~VN~~~v~~~~~-~~~~L~~gDeV~i~P 88 (93)
T 3dwg_C 24 SGDTLGAVISDLEANYSGISERLMDPSSPGKLHRFVNIYVNDEDVRFSGG-LATAIADGDSVTILP 88 (93)
T ss_dssp CCSBHHHHHHHHHHHSTTHHHHHBCSSSTTSBCTTEEEEETTEEGGGTTG-GGCBCCTTCEEEEEE
T ss_pred CCCCHHHHHHHHHHHChhHHHHHhccccCCcccCCEEEEECCEEccCcCC-CCcCCCCCCEEEEEC
Confidence 457899999988887631 1 125899999999874211 123489999998875
No 153
>1s3s_G P47 protein; AAA ATPase, protein-protein complex, UBX domain, protein binding; HET: ADP; 2.90A {Rattus norvegicus} SCOP: d.15.1.2 PDB: 1i42_A 1jru_A
Probab=45.91 E-value=44 Score=25.67 Aligned_cols=69 Identities=9% Similarity=0.116 Sum_probs=49.2
Q ss_pred CcEEEEEEeCCce-EEEEEcCCChHHHHHHHHHHHc-CCCCCceEEEE--CCcccC-CCCCcccCCCCCCcEEE
Q 027553 148 AKIVVSIQDKGGL-KQFRVYADDKFERLFKMYADKV-NLDQENLVFCF--DGDKIG-PEATPASLEMEDNDIIE 216 (222)
Q Consensus 148 ~kItIkV~~qdg~-v~FkIk~tT~L~KLf~aYaer~-gl~~~~lrF~F--DG~rI~-~~~TP~sLgMEDGDiID 216 (222)
...+|.|+-.+|. +.-+...++++..|++...... +.....+.|+- =.+.+. .+.|-.++||-..-+|-
T Consensus 51 ~~t~IqIRlpdG~rl~~rF~~~~tl~~v~~fV~~~~~~~~~~~f~L~t~fPrk~l~d~~~TL~eagL~psavl~ 124 (127)
T 1s3s_G 51 PTTNIQIRLADGGRLVQKFNHSHRISDIRLFIVDARPAMAATSFVLMTTFPNKELADENQTLKEANLLNAVIVQ 124 (127)
T ss_dssp CCCCEEEEETTTTEEEEECCSSCBHHHHHHHHHHHCSGGGTSCEEEEETTTTEECCSTTCBHHHHTCSSCEEEE
T ss_pred CcEEEEEECCCCCEEEEEeCCCCCHHHHHHHHHHhCcCCCCCCeEEecCCCCCCCCCCCCcHHHCCCcCceEEE
Confidence 3566777777875 7888999999999998766643 34456666664 355554 36899999998866554
No 154
>2k5p_A THis protein, thiamine-biosynthesis protein; NESG, GMR137, structural genomics, PSI-2, protein structure initiative; NMR {Geobacter metallireducens gs-15} PDB: 3cwi_A
Probab=44.54 E-value=9.4 Score=27.26 Aligned_cols=52 Identities=15% Similarity=0.217 Sum_probs=38.6
Q ss_pred EEEc--CCChHHHHHHHHHHHcCCC-CCceEEEECCcccCCCCCcccCCCCCCcEEEEEe
Q 027553 163 FRVY--ADDKFERLFKMYADKVNLD-QENLVFCFDGDKIGPEATPASLEMEDNDIIEVHT 219 (222)
Q Consensus 163 FkIk--~tT~L~KLf~aYaer~gl~-~~~lrF~FDG~rI~~~~TP~sLgMEDGDiIDV~i 219 (222)
+.+. ..+++..|.. .+|++ +..+...+||.-|... .-.+--|.+||.|+++.
T Consensus 10 ~e~~~~~~~Tl~~LL~----~l~~~~~~~vAVavNg~iVpr~-~~~~~~L~dGD~IEIv~ 64 (78)
T 2k5p_A 10 STVDGAESLNVTELLS----ALKVAQAEYVTVELNGEVLERE-AFDATTVKDGDAVEFLY 64 (78)
T ss_dssp EECSSCSCEEHHHHHH----HHTCSCTTTCCEEETTEECCTT-HHHHCEECSSBCEEECC
T ss_pred EEcCCCCCCcHHHHHH----HcCCCCCCcEEEEECCEECChH-HcCcccCCCCCEEEEEe
Confidence 3444 5577887776 55888 8889999999998643 34455789999999864
No 155
>2inc_C TOUB protein; DIIRON, 4-helix bundle, carboxylate bridge, metalloenzyme, oxidoreductase; HET: P6G; 1.85A {Pseudomonas stutzeri} SCOP: d.15.12.1 PDB: 2ind_C* 3n20_C* 1t0r_C 1t0s_C 1t0q_C* 3n1x_C 3n1y_C* 3n1z_C* 2rdb_C* 3rn9_C* 3rna_C 3rnb_C 3rnc_C 3rne_C 3rnf_C* 3rng_C
Probab=42.00 E-value=1e+02 Score=22.79 Aligned_cols=60 Identities=8% Similarity=0.050 Sum_probs=49.8
Q ss_pred EEEEEcCCChHHHHHHHHHHHc-CC----CC-CceEEEECC--cccCCCCCcccCCCCCCcEEEEEec
Q 027553 161 KQFRVYADDKFERLFKMYADKV-NL----DQ-ENLVFCFDG--DKIGPEATPASLEMEDNDIIEVHTK 220 (222)
Q Consensus 161 v~FkIk~tT~L~KLf~aYaer~-gl----~~-~~lrF~FDG--~rI~~~~TP~sLgMEDGDiIDV~ik 220 (222)
.-+-|-...+|..+-++.|-.- |. .+ ..++..++| +.+..+.|..+-||.--|+|||+..
T Consensus 15 ~LV~VDt~dTmdqVA~kvA~HsVGrRV~p~p~~~~rVr~~G~~~~~pr~~tvae~gl~P~e~vev~~~ 82 (83)
T 2inc_C 15 QLVPVDTEDTMDQVAEKCAYHSINRRVHPQPEKILRVRRHEDGTLFPRGMIVSDAGLRPTETLDIIFM 82 (83)
T ss_dssp EEEEECTTCBHHHHHHHHHTTTBTTTBCCCTTSEEEEEETTTCCEECTTCBGGGSCCCTTCEEEEEEE
T ss_pred EEEEecCCCcHHHHHHHHhhhhcceecCCCCCCeEEEEecCCccCCCCCCEeeccCCCCceEEEEEEc
Confidence 4578888999999998888532 32 22 479999999 9999999999999999999999864
No 156
>3qij_A Protein 4.1; cytoskeleton, structural genomics, structural genomics conso SGC; 1.80A {Homo sapiens} PDB: 1gg3_A 3bin_A 2he7_A 2rq1_A
Probab=41.46 E-value=41 Score=28.91 Aligned_cols=48 Identities=13% Similarity=0.016 Sum_probs=38.3
Q ss_pred CCCcEEEEEEeCCce-EEEEEcCCChHHHHHHHHHHHcCCCC-CceEEEE
Q 027553 146 ERAKIVVSIQDKGGL-KQFRVYADDKFERLFKMYADKVNLDQ-ENLVFCF 193 (222)
Q Consensus 146 ~~~kItIkV~~qdg~-v~FkIk~tT~L~KLf~aYaer~gl~~-~~lrF~F 193 (222)
.+..|.++|.-.||. ..|.|...++-+-|++..|.++|+.. .-|-|.|
T Consensus 14 ~~~~~~~~V~lldgt~~~~~vd~~tt~~el~~~v~~~l~L~e~~~FgL~~ 63 (296)
T 3qij_A 14 LYFQGHCKVSLLDDTVYECVVEKHAKGQDLLKRVCEHLNLLEEDYFGLAI 63 (296)
T ss_dssp ---CCEEEEECTTSCEEEEECCTTCBHHHHHHHHHHHHTCSSGGGEEEEE
T ss_pred CCceEEEEEEccCCCEEEEEECCCCCHHHHHHHHHHHcCCCCcceeEEEE
Confidence 467789999988886 79999999999999999999999964 4455554
No 157
>3qwx_X Cell death abnormality protein 2; cell engulfment, signaling protein; 2.01A {Caenorhabditis elegans}
Probab=41.19 E-value=36 Score=26.66 Aligned_cols=70 Identities=13% Similarity=0.234 Sum_probs=44.9
Q ss_pred CCcEEEEEEeCCc---eEEEEEcC---C----------------ChHHHHHHHHHHHcCCCC-----------CceEEEE
Q 027553 147 RAKIVVSIQDKGG---LKQFRVYA---D----------------DKFERLFKMYADKVNLDQ-----------ENLVFCF 193 (222)
Q Consensus 147 ~~kItIkV~~qdg---~v~FkIk~---t----------------T~L~KLf~aYaer~gl~~-----------~~lrF~F 193 (222)
....+|.|...+. ..||+|.+ + ..+..|...|....+... ..++-+|
T Consensus 46 ~g~y~LSv~~~~~~~~v~H~~I~~~~~~~~g~~~~~~~~~~~~F~sl~eLv~~y~~~~~~~~~L~~P~~~p~~~~~~aly 125 (174)
T 3qwx_X 46 PGEYSLTVREADEGNAVCHYLIERGEPKEDGTAAAGVKIANQSFPDIPALLNHFKMRVLTEASLLAAYKKPIIEVVVGTF 125 (174)
T ss_dssp TTCEEEEEECCSSSSCEEEEEEEECCCCTTSSSCCCEEETTEEESSHHHHHHHTTSSCSSSCCCCEECCCCCSEEEEESS
T ss_pred CCCEEEEEEECCCCCceEEEEEEeccCCCCCcccceEEECCeecCcHHHHhhhhhcCcccccccccccccccccEEEEec
Confidence 4467788887665 56888865 2 477888888876543220 1122222
Q ss_pred CCcccCCCCCcccCCCCCCcEEEEEec
Q 027553 194 DGDKIGPEATPASLEMEDNDIIEVHTK 220 (222)
Q Consensus 194 DG~rI~~~~TP~sLgMEDGDiIDV~ik 220 (222)
+= ....+.+|.+.-||+|.|.-+
T Consensus 126 dy----~~~~~~eLsf~~Gd~i~v~~~ 148 (174)
T 3qwx_X 126 KF----TGERETDLPFEQGERLEILSK 148 (174)
T ss_dssp CB----CCSSTTBCCBCTTCEEEEEEC
T ss_pred Cc----ccCCCCccccccCCEEEEEEc
Confidence 21 133678999999999999754
No 158
>3ivf_A Talin-1; FERM domain, cell membrane, cell projection, cytoskeleton, M phosphoprotein, cell adhesion, structural protein; 1.94A {Mus musculus} PDB: 2kma_A 2kc1_A
Probab=39.72 E-value=54 Score=28.82 Aligned_cols=48 Identities=8% Similarity=0.173 Sum_probs=40.7
Q ss_pred CCCcEEEEEEeCCce-EEEEEcCCChHHHHHHHHHHHcCCCC-CceEEEE
Q 027553 146 ERAKIVVSIQDKGGL-KQFRVYADDKFERLFKMYADKVNLDQ-ENLVFCF 193 (222)
Q Consensus 146 ~~~kItIkV~~qdg~-v~FkIk~tT~L~KLf~aYaer~gl~~-~~lrF~F 193 (222)
....+.++|.-.||. ..|.|..+++-+.|++..|.++|+.. ..|-+.+
T Consensus 82 ~~~~~~~~V~l~dg~~~~~~vd~~tt~~el~~~v~~~l~L~e~~~FgL~~ 131 (371)
T 3ivf_A 82 RKKQRPLKIRMLDGTVKTIMVDDSKTVTDMLMTICARIGITNHDEYSLVR 131 (371)
T ss_dssp EECEEEEEEECTTSCEEEEEEETTSBHHHHHHHHHHHTTCSCGGGEEEEC
T ss_pred cCceeEEEEECcCCCEEEEEECCCCCHHHHHHHHHHHcCCCCccccEEEE
Confidence 345688999999987 68999999999999999999999954 6666666
No 159
>2l52_A Methanosarcina acetivorans SAMP1 homolog; beta-grAsp fold, protein binding, E1-like, SAMP activator, ELSA, adenylation, ubiquitin; NMR {Methanosarcina acetivorans}
Probab=39.14 E-value=71 Score=23.10 Aligned_cols=51 Identities=18% Similarity=0.232 Sum_probs=34.9
Q ss_pred CChHHHHHHHHHHHcC-CCC---------Cce-------EEEECCcccCCCCCcccCCCCCCcEEEEEe
Q 027553 168 DDKFERLFKMYADKVN-LDQ---------ENL-------VFCFDGDKIGPEATPASLEMEDNDIIEVHT 219 (222)
Q Consensus 168 tT~L~KLf~aYaer~g-l~~---------~~l-------rF~FDG~rI~~~~TP~sLgMEDGDiIDV~i 219 (222)
..++..|++..+.++. +.. ..+ .+..||+.+...+ -.+--+.+||.|.++.
T Consensus 27 ~~tv~~ll~~L~~~~p~l~~~l~~~g~l~~~v~~~~~~~~v~VNg~~v~~~~-~~~~~L~~gD~V~i~p 94 (99)
T 2l52_A 27 GEKVIDVLLSLTDKYPALKYVIFEKGDEKSEILILCGSINILINGNNIRHLE-GLETLLKDSDEIGILP 94 (99)
T ss_dssp CSSHHHHHHHHHHHCGGGTTTSBCSCCTTSSCCCBCSSCEEEETTSCGGGTT-STTSCCCTTEEEEEEC
T ss_pred CCcHHHHHHHHHHHChhHHHHHhcccccccceeccccccEEEECCEEccccC-CCCCCCCCCCEEEEEC
Confidence 5899999998887752 111 134 8999999885321 2233589999999874
No 160
>3hvz_A Uncharacterized protein; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium; 2.20A {Clostridium leptum}
Probab=38.84 E-value=62 Score=23.00 Aligned_cols=62 Identities=18% Similarity=0.178 Sum_probs=37.1
Q ss_pred EEEEeCCceEEEEEcCCChHHHHHHHHHHHcCCCCCceEEEECCcccCCCCCcccCCCCCCcEEEEEecc
Q 027553 152 VSIQDKGGLKQFRVYADDKFERLFKMYADKVNLDQENLVFCFDGDKIGPEATPASLEMEDNDIIEVHTKK 221 (222)
Q Consensus 152 IkV~~qdg~v~FkIk~tT~L~KLf~aYaer~gl~~~~lrF~FDG~rI~~~~TP~sLgMEDGDiIDV~ikQ 221 (222)
|.|...+|.+ +.+...++..-+ +|+-..++....+--.+||+.+..+ | -|++||+|+++..+
T Consensus 8 i~v~tP~G~~-~~lp~GaT~~D~--A~~Ih~~lg~~~v~AkVNG~~v~L~-~----~L~~gd~VeIit~~ 69 (78)
T 3hvz_A 8 VFVFTPKGDV-ISLPIGSTVIDF--AYAIHSAVGNRMIGAKVDGRIVPID-Y----KVKTGEIIDVLTTK 69 (78)
T ss_dssp EEEECTTSCE-EEEETTCBHHHH--HHHHCHHHHHTEEEEEETTEEECTT-C----BCCTTCBEEEEECC
T ss_pred EEEECCCCCE-EEecCCCCHHHH--HHHhhhhhhcceEEEEECCEEcCCC-c----ccCCCCEEEEEccC
Confidence 5566677753 334444444433 2333333333556667799888764 3 48999999998654
No 161
>2juo_A GA-binding protein alpha chain; OST, ubiquitin, transcription factor, ensemble, DNA-binding, nucleus, transcription regulation; NMR {Mus musculus}
Probab=35.62 E-value=1.1e+02 Score=22.99 Aligned_cols=57 Identities=7% Similarity=0.237 Sum_probs=47.5
Q ss_pred EEEEcCCChHHHHHHHHHHHcCCCCCceEEEECCcccCCCCCcccCCCCCCcEEEEE
Q 027553 162 QFRVYADDKFERLFKMYADKVNLDQENLVFCFDGDKIGPEATPASLEMEDNDIIEVH 218 (222)
Q Consensus 162 ~FkIk~tT~L~KLf~aYaer~gl~~~~lrF~FDG~rI~~~~TP~sLgMEDGDiIDV~ 218 (222)
.-.|.=..|+..|...-..|.|++.+.+.|+..+..+.++.|--+-+.+-.-.+.+.
T Consensus 6 ~qhmDI~epL~~Lk~LLe~Rl~i~L~~y~f~LQd~~L~~~k~LvdQcVqgeGlVQin 62 (89)
T 2juo_A 6 SQAIDINEPIGNLKKLLEPRLQCSLDAHEICLQDIQLDPDRSLFDQGVKTDGTVQLS 62 (89)
T ss_dssp EEEEESSSBGGGHHHHSHHHHCSCCSSCEEEETTEECCTTSBTTTSSCCCCSEEEEE
T ss_pred hhhccccCcHHHHHHHHHHHhcCCcccCeEEeeccccCCCccHHHhhcccccEEEEE
Confidence 345566789999999999999999999999999888999998888888776666543
No 162
>2qjl_A URM1, ubiquitin-related modifier 1; ubiquitin-like protein, signaling protein; 1.44A {Saccharomyces cerevisiae} PDB: 2pko_A 2ax5_A
Probab=34.55 E-value=1.1e+02 Score=21.94 Aligned_cols=55 Identities=11% Similarity=0.156 Sum_probs=38.1
Q ss_pred EEEEEc--CCChHHHHHHHHHHHcCC-C------------CCceEEEECCcccC---CCCCcccCCCCCCcEEEEEe
Q 027553 161 KQFRVY--ADDKFERLFKMYADKVNL-D------------QENLVFCFDGDKIG---PEATPASLEMEDNDIIEVHT 219 (222)
Q Consensus 161 v~FkIk--~tT~L~KLf~aYaer~gl-~------------~~~lrF~FDG~rI~---~~~TP~sLgMEDGDiIDV~i 219 (222)
..+.+. ..++++.|++..++++.- . ...+.+..||..+. ..+| -+.|||.|.++.
T Consensus 22 ~~~~l~~~~~~Tv~~L~~~L~~~~~~~~~~l~~~~~~~~lr~~~~v~VN~~~~~~~~~~d~----~L~dgDeVa~~P 94 (99)
T 2qjl_A 22 HKIKMDKEDPVTVGDLIDHIVSTMINNPNDVSIFIEDDSIRPGIITLINDTDWELEGEKDY----ILEDGDIISFTS 94 (99)
T ss_dssp EEEEECSCSCCBHHHHHHHHHHHTCSSGGGHHHHEETTEECTTEEEEETTEEGGGGTGGGC----BCCTTCEEEEEE
T ss_pred EEEecCCCCCCcHHHHHHHHHHHCchhhHHHhhhccCCccccCeEEEECCEEccccCCCCc----CcCCCCEEEEEC
Confidence 455555 568999999988877631 1 12356888999764 3444 489999998874
No 163
>2kmm_A Guanosine-3',5'-BIS(diphosphate) 3'- pyrophosphohydrolase; methods development, TGS domain, predominantly beta-sheet structure; NMR {Porphyromonas gingivalis}
Probab=32.34 E-value=92 Score=20.51 Aligned_cols=61 Identities=10% Similarity=0.019 Sum_probs=36.8
Q ss_pred EEEEeCCceEEEEEcCCChHHHHHHHHHHHcCCCCCceEEEECCcccCCCCCcccCCCCCCcEEEEEec
Q 027553 152 VSIQDKGGLKQFRVYADDKFERLFKMYADKVNLDQENLVFCFDGDKIGPEATPASLEMEDNDIIEVHTK 220 (222)
Q Consensus 152 IkV~~qdg~v~FkIk~tT~L~KLf~aYaer~gl~~~~lrF~FDG~rI~~~~TP~sLgMEDGDiIDV~ik 220 (222)
|+|.-.+|.. +.+...+++..|...+.... ....+--.+||+.+..+ --+++||.|+++.-
T Consensus 3 i~i~~p~g~~-~~~~~g~T~~dla~~i~~~l--~~~~vaa~vNg~lvdl~-----~~L~~~~~Veivt~ 63 (73)
T 2kmm_A 3 VMVFTPKGEI-KRLPQGATALDFAYSLHSDL--GDHCIGAKVNHKLVPLS-----YVLNSGDQVEVLSS 63 (73)
T ss_dssp EEEECTTCCE-EEECTTCBHHHHHHHHCSHH--HHTEEEEEETTEECCTT-----CBCCSSSBEEEEEC
T ss_pred EEEEcCCCCE-EEcCCCCcHHHHHHHHhhcc--ccceEEEEECCEEeCCC-----cCcCCCCEEEEEEC
Confidence 4444445552 45566677776665542221 23455567899877653 45668999988753
No 164
>2w2s_A Matrix protein; viral assembly, viral morphogenesis, polymer, viral protein, VSV; 2.75A {Lagos bat virus}
Probab=32.33 E-value=11 Score=31.56 Aligned_cols=14 Identities=36% Similarity=1.070 Sum_probs=6.5
Q ss_pred cccCCcCCCCCcch
Q 027553 69 EEEEDWLPPPPKVM 82 (222)
Q Consensus 69 ~~~edwl~pppk~~ 82 (222)
|||+=|||||--++
T Consensus 27 ddddlwlpppeyvp 40 (202)
T 2w2s_A 27 DDDDLWMPPPEYVP 40 (202)
T ss_dssp ---CCEECCCC---
T ss_pred CcccccCCCccccc
Confidence 44788998775444
No 165
>3ivf_A Talin-1; FERM domain, cell membrane, cell projection, cytoskeleton, M phosphoprotein, cell adhesion, structural protein; 1.94A {Mus musculus} PDB: 2kma_A 2kc1_A
Probab=31.69 E-value=2.4e+02 Score=24.62 Aligned_cols=72 Identities=10% Similarity=0.132 Sum_probs=55.5
Q ss_pred cEEEEEEeCCceEEEEEcCCChHHHHHHHHHHHcCC----CCCceEEEE------CCcccCCCCCcccCCCCCCcEEEEE
Q 027553 149 KIVVSIQDKGGLKQFRVYADDKFERLFKMYADKVNL----DQENLVFCF------DGDKIGPEATPASLEMEDNDIIEVH 218 (222)
Q Consensus 149 kItIkV~~qdg~v~FkIk~tT~L~KLf~aYaer~gl----~~~~lrF~F------DG~rI~~~~TP~sLgMEDGDiIDV~ 218 (222)
.|.|+|.-.+....+...++++...+...-+++++- +....-++. .|.=+..+.|-+.+++.+|+.|...
T Consensus 3 ~~~~~~~~~~~~~~~~f~~~~~v~~~~~~i~e~~~~~~~~~~~~y~l~~~~~~~~~~~Wl~~~~~l~~y~~~~~~~l~~~ 82 (371)
T 3ivf_A 3 ALSLKISIGNVVKTMQFEPSTMVYDACRMIRERIPEALAGPPNDFGLFLSDDDPKKGIWLEAGKALDYYMLRNGDTMEYR 82 (371)
T ss_dssp CEEEEEEETTEEEEEEECTTCBHHHHHHHHHTTCGGGGSSCGGGEEEEECCSSGGGCEECCTTSBGGGGTCCTTCEEEEE
T ss_pred cEEEEEEecceeEEEEECCCCCHHHHHHHHHHhcccccCCCHHHCeEeccCCCCCcCEeccCCCCHHHhCCCCCceeecc
Confidence 356666655434689999999999999998888853 567777777 3344778889999999999999865
Q ss_pred ec
Q 027553 219 TK 220 (222)
Q Consensus 219 ik 220 (222)
.+
T Consensus 83 ~~ 84 (371)
T 3ivf_A 83 KK 84 (371)
T ss_dssp EC
T ss_pred Cc
Confidence 43
No 166
>3qwy_A Cell death abnormality protein 2; cell engulfment, signaling protein; 2.52A {Caenorhabditis elegans}
Probab=31.44 E-value=1.9e+02 Score=24.71 Aligned_cols=70 Identities=13% Similarity=0.234 Sum_probs=44.7
Q ss_pred CCcEEEEEEeCCc---eEEEEEcC---C----------------ChHHHHHHHHHHHcCCCC-----------CceEEEE
Q 027553 147 RAKIVVSIQDKGG---LKQFRVYA---D----------------DKFERLFKMYADKVNLDQ-----------ENLVFCF 193 (222)
Q Consensus 147 ~~kItIkV~~qdg---~v~FkIk~---t----------------T~L~KLf~aYaer~gl~~-----------~~lrF~F 193 (222)
....+|.|...+. ..||+|.. + ..+..|...|........ ..++-+|
T Consensus 75 ~g~y~LSv~~~~~~~~v~H~~I~~~~~~~~g~~~g~~~~~~~~F~Sl~eLv~~y~~~~~~~~~L~~P~~~p~~~~~~al~ 154 (308)
T 3qwy_A 75 PGEYSLTVREADEGNAVCHYLIERGEPKEDGTAAAGVKIANQSFPDIPALLNHFKMRVLTEASLLAAYKKPIIEVVVGTF 154 (308)
T ss_dssp TTCEEEEEECCSSSSCEEEEEEEECCCCTTTTCCCCEEETTEEESSHHHHHHHHHHSCSSSCCCCEECCCCCCEEEEESS
T ss_pred CCCEEEEEEeCCCCCceEEEEEeeccCCCcCcccceEEEeCeeeCCHHHHHHHHhhcccccchhccccccccceeEEEec
Confidence 3456777777665 56888865 1 467788888876554210 1122222
Q ss_pred CCcccCCCCCcccCCCCCCcEEEEEec
Q 027553 194 DGDKIGPEATPASLEMEDNDIIEVHTK 220 (222)
Q Consensus 194 DG~rI~~~~TP~sLgMEDGDiIDV~ik 220 (222)
+ .....+.+|.+.-||+|.|..+
T Consensus 155 d----y~~~~~~eLsf~~Gd~i~v~~~ 177 (308)
T 3qwy_A 155 K----FTGERETDLPFEQGERLEILSK 177 (308)
T ss_dssp C----BCCSSTTBCCBCTTCEEEEEEC
T ss_pred e----EcCCCCCcCcCCCCCEEEEEEc
Confidence 2 1235778999999999999754
No 167
>1gcq_C VAV proto-oncogene; SH3 domain, protein-protein complex, GRB2,VAV, signaling protein/signaling protein complex; 1.68A {Mus musculus} SCOP: b.34.2.1 PDB: 1gcp_A
Probab=30.13 E-value=19 Score=23.96 Aligned_cols=28 Identities=25% Similarity=0.330 Sum_probs=19.5
Q ss_pred ECCcccCCCCCcccCCCCCCcEEEEEec
Q 027553 193 FDGDKIGPEATPASLEMEDNDIIEVHTK 220 (222)
Q Consensus 193 FDG~rI~~~~TP~sLgMEDGDiIDV~ik 220 (222)
|+...=.....+.+|.++-||+|.|..+
T Consensus 13 y~~~~~~~~~~~~eLsf~~Gd~i~v~~~ 40 (70)
T 1gcq_C 13 YYGIPPPPGAFGPFLRLNPGDIVELTKA 40 (70)
T ss_dssp BSSSSCCGGGCSCBCCBCTTCEEEEEEC
T ss_pred EEecCCCCCCCCCcCCcCCCCEEEEEeC
Confidence 3433333334577999999999999865
No 168
>2eyz_A V-CRK sarcoma virus CT10 oncogene homolog isoform A; SH2, SH3, signaling protein; NMR {Homo sapiens} PDB: 2l3s_A 2l3p_A 2l3q_A 2ggr_A
Probab=30.03 E-value=79 Score=27.20 Aligned_cols=69 Identities=17% Similarity=0.306 Sum_probs=44.7
Q ss_pred CcEEEEEEeCCceEEEEEcCC-----------------------------ChHHHHHHHHHHHcCC------C--C----
Q 027553 148 AKIVVSIQDKGGLKQFRVYAD-----------------------------DKFERLFKMYADKVNL------D--Q---- 186 (222)
Q Consensus 148 ~kItIkV~~qdg~v~FkIk~t-----------------------------T~L~KLf~aYaer~gl------~--~---- 186 (222)
...+|.|...+...||+|.+. ..+..|.+.|...... + .
T Consensus 45 g~y~LSv~~~~~v~H~~I~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~F~sl~~LV~~y~~~~l~~~~L~~P~~~~~~~ 124 (304)
T 2eyz_A 45 GDYVLSVSENSRVSHYIINSSGPRPPVPPSPAQPPPGVSPSRLRIGDQEFDSLPALLEFYKIHYLDTTTLIEPVSRSRQG 124 (304)
T ss_dssp SCCEEEECSSSSCEEEECCCCSSCCSSCCCCCCCSSSSSCCCCCBTTBCCSCHHHHHTTTTTSCCSSSSSCCBCCSCSCC
T ss_pred CCEEEEEEECCEEEEEEEeeccccccccccccccccccCCCeEEeCCcEECCHHHHHHHhhhCccccceecccccccccc
Confidence 357888877665579999873 5688899999865310 0 0
Q ss_pred ----------CceEEEECCcccCCCCCcccCCCCCCcEEEEEec
Q 027553 187 ----------ENLVFCFDGDKIGPEATPASLEMEDNDIIEVHTK 220 (222)
Q Consensus 187 ----------~~lrF~FDG~rI~~~~TP~sLgMEDGDiIDV~ik 220 (222)
..++-+|+ .....+.+|.+.-||+|.|..+
T Consensus 125 ~g~~~~~~~~~~~~alyd----y~~~~~~eLsf~~Gd~i~v~~~ 164 (304)
T 2eyz_A 125 SGVILRQEEAEYVRALFD----FNGNDEEDLPFKKGDILRIRDK 164 (304)
T ss_dssp SCCCCCCCCCCEEEECSC----CCCSCSSSCCCCTTCEEEEEEC
T ss_pred ccccCCcccceeEEEEee----ecCCCCCcCcccCCCEEEEEEe
Confidence 01222222 1234577899999999999764
No 169
>2r2q_A Gamma-aminobutyric acid receptor-associated protein-like 1; autophagy, ubiquitin homolog, structural genomics consortium, SGC, microtubule; 1.65A {Homo sapiens} PDB: 2l8j_A 1kjt_A 1kot_A 3d32_A 3dow_A 1gnu_A 1klv_A 1km7_A
Probab=28.71 E-value=1.8e+02 Score=21.69 Aligned_cols=47 Identities=19% Similarity=0.354 Sum_probs=35.4
Q ss_pred EEEEEcCCChHHHHHHHHHHHcCCCCCceEEEE-CCcccCCCCCcccC
Q 027553 161 KQFRVYADDKFERLFKMYADKVNLDQENLVFCF-DGDKIGPEATPASL 207 (222)
Q Consensus 161 v~FkIk~tT~L~KLf~aYaer~gl~~~~lrF~F-DG~rI~~~~TP~sL 207 (222)
..|.|..+.++..++..-.++++++++.--|+| +|.....+.|..+|
T Consensus 46 ~KflVp~~~tv~~~~~~iRk~l~l~~~~alfl~vn~~~p~~~~~m~~L 93 (110)
T 2r2q_A 46 RKYLVPSDLTVGQFYFLIRKRIHLRPEDALFFFVNNTIPPTSATMGQL 93 (110)
T ss_dssp CEEEEETTCBHHHHHHHHHHHTTCCTTSCCEEEBTTBCCCTTSBHHHH
T ss_pred eEEEeCCCCcHHHHHHHHHHHhcCCCCCcEEEEECCEecCccChHHHH
Confidence 379999999999999999999999886544666 55544445555555
No 170
>1wmh_B Partitioning defective-6 homolog alpha; kinase, PB1 domain, OPCA motif, APKC, cell polarity, transferase/cell cycle complex; 1.50A {Homo sapiens} SCOP: d.15.2.2
Probab=28.43 E-value=1.8e+02 Score=21.44 Aligned_cols=53 Identities=9% Similarity=0.235 Sum_probs=40.2
Q ss_pred CCcEEEEEEeCCceEEEEEcCC--ChHHHHHHHHHHHcCCCCCceEEEE---CCcccC
Q 027553 147 RAKIVVSIQDKGGLKQFRVYAD--DKFERLFKMYADKVNLDQENLVFCF---DGDKIG 199 (222)
Q Consensus 147 ~~kItIkV~~qdg~v~FkIk~t--T~L~KLf~aYaer~gl~~~~lrF~F---DG~rI~ 199 (222)
+..+.||.+....--.|.|.++ .+|..++.....-+.+....+...| +|.-|.
T Consensus 4 ~~~l~vKskf~aE~RRFs~d~~~~~~fe~f~~lv~~lh~L~~~~f~i~Y~D~dGDLlp 61 (86)
T 1wmh_B 4 MSIVEVKSKFDAEFRRFALPRASVSGFQEFSRLLRAVHQIPGLDVLLGYTDAHGDLLP 61 (86)
T ss_dssp -CEEEEEEEETTEEEEEEEEGGGCCCHHHHHHHHHHHTTCTTCCCEEEEECTTSCEEE
T ss_pred CCEEEEEeecCCeeeEeEccCCCCCCHHHHHHHHHHHcCCCCCCEEEEEECCCCCEee
Confidence 4567777776665468999755 8999999999999998777888888 455543
No 171
>3u7z_A Putative metal binding protein rumgna_00854; the binding protein, transport protein, structural genomics, center for structural genomics; 1.30A {Ruminococcus gnavus}
Probab=27.58 E-value=99 Score=23.30 Aligned_cols=69 Identities=13% Similarity=0.213 Sum_probs=42.9
Q ss_pred CCCcEEEEEEeCCce-EEEEEcC-CChHHHHHH-HHHHHcCCC-----CCce-----------------EEEECCcccCC
Q 027553 146 ERAKIVVSIQDKGGL-KQFRVYA-DDKFERLFK-MYADKVNLD-----QENL-----------------VFCFDGDKIGP 200 (222)
Q Consensus 146 ~~~kItIkV~~qdg~-v~FkIk~-tT~L~KLf~-aYaer~gl~-----~~~l-----------------rF~FDG~rI~~ 200 (222)
+..+|+|.|...++. ..|.|.+ .+.|..+++ ++ .+. ...| .|.-||+.+.
T Consensus 5 g~k~i~i~v~~~~~~~~~~~v~t~g~tL~dvLk~~~----~ve~e~s~~G~fITsI~G~~ad~~~~~yW~~~vng~~~~- 79 (101)
T 3u7z_A 5 GEKHITVTVIHGDQTENVFEFDTDAKYLGEVLESEN----LVDGESGEYGLFITTVDEETADDSKQQWWCITKGGEQVN- 79 (101)
T ss_dssp CCEEEEEEEECTTSCEEEEEEEECCSBHHHHHHHTT----CEEEECCTTSCEEEEETTEECCGGGTEEEEEEETTEECC-
T ss_pred ceeEEEEEEEcCCCceeEEEEcCCccHHHHHHHHcC----ccccccccccceEEEEcCEecCCCCCCEEEEEECCEEhh-
Confidence 567899999998875 4566653 233544443 33 121 1112 3444666554
Q ss_pred CCCcccCCCCCCcEEEEEec
Q 027553 201 EATPASLEMEDNDIIEVHTK 220 (222)
Q Consensus 201 ~~TP~sLgMEDGDiIDV~ik 220 (222)
.-+.++-+.|||.|++...
T Consensus 80 -~Ga~~~~v~dGD~i~~~~t 98 (101)
T 3u7z_A 80 -TSADQTPVSDGDAFELTLK 98 (101)
T ss_dssp -SCGGGCBCCTTCEEEEEEE
T ss_pred -hchhheEecCCCEEEEEEe
Confidence 4677889999999998764
No 172
>2npt_A Dual specificity mitogen-activated protein kinase; MAP2K5, MEK5, MKK PRKMK5, MAP kinase kinase 5, PHOX, PHOX-domain; 1.75A {Homo sapiens} SCOP: d.15.2.2 PDB: 2o2v_A 1wi0_A
Probab=27.21 E-value=2.1e+02 Score=21.88 Aligned_cols=58 Identities=21% Similarity=0.242 Sum_probs=41.5
Q ss_pred CCCcEEEEEEeCCc-eEEEEEc--CCChHHHHHHHHHHHcCCCCCceEEEECCcccCCCCCcccCCCCCCcEEEEE
Q 027553 146 ERAKIVVSIQDKGG-LKQFRVY--ADDKFERLFKMYADKVNLDQENLVFCFDGDKIGPEATPASLEMEDNDIIEVH 218 (222)
Q Consensus 146 ~~~kItIkV~~qdg-~v~FkIk--~tT~L~KLf~aYaer~gl~~~~lrF~FDG~rI~~~~TP~sLgMEDGDiIDV~ 218 (222)
+.+-|.|+|.-+++ .+-..|. ..-.|+-|..+..+-+.- .+-|+-+.+=|+||.|.|.
T Consensus 11 ~a~~lVIRIk~p~~g~vDwaV~~~~~L~FrDvL~~I~~vmP~---------------aT~TAFeYEDE~gDRITVR 71 (106)
T 2npt_A 11 ENQVLVIRIKIPNSGAVDWTVHSGPQLLFRDVLDVIGQVLPE---------------ATTTAFEYEDEDGDRITVR 71 (106)
T ss_dssp --CCEEEEEEETTTEEEEEEECC--CCCHHHHHHHHHHHSTT---------------SCCSEEEEECTTSCEEEEC
T ss_pred ccCceEEEEECCCCCccccccCCcccccHHHHHHHHHHhCcc---------------ceeeeeeeccccCCeeEEc
Confidence 57889999998865 5888887 778899999988776542 2445566667788888775
No 173
>3h9d_A ATG8, microtubule-associated protein 1A/1B, light chain putative; autophagy, lipidation, ubiquitin-like, S protein; 2.30A {Trypanosoma brucei} SCOP: d.15.1.0
Probab=26.91 E-value=57 Score=25.24 Aligned_cols=58 Identities=19% Similarity=0.274 Sum_probs=40.9
Q ss_pred EEEEEcCCChHHHHHHHHHHHcCCCCCceEEEE-CCcccCCCCCcccC----CCCCCcEEEEE
Q 027553 161 KQFRVYADDKFERLFKMYADKVNLDQENLVFCF-DGDKIGPEATPASL----EMEDNDIIEVH 218 (222)
Q Consensus 161 v~FkIk~tT~L~KLf~aYaer~gl~~~~lrF~F-DG~rI~~~~TP~sL----gMEDGDiIDV~ 218 (222)
..|.|..+.++..++..-.++++++++.--|+| |+.-...+.|..+| .=+||=.+-.+
T Consensus 50 ~KflVp~~~tv~qf~~~iRkrl~l~~~~alFl~Vn~~~p~~~~~m~~lY~~~kd~DGfLyv~Y 112 (119)
T 3h9d_A 50 CKFLVPSDLTVGQFVSVLRKRVQLEAESALFVYTNDTVLPSSAQMADIYSKYKDEDGFLYMKY 112 (119)
T ss_dssp CEEEEETTCBHHHHHHHHHHHHTCCTTSCCEEEETTEECCTTSBHHHHHHHHCCTTSCEEEEE
T ss_pred ceEEcCCCCCHHHHHHHHHHHhCCCccceEEEEECCcCCCccchHHHHHHHcCCCCCeEEEEE
Confidence 479999999999999999999999886645555 77644455565544 12455544443
No 174
>3rui_B Autophagy-related protein 8; autophagosome formation, non-canonical E1, ATP BI UBL, ATG8, ATG12, ATG10, ATG3, UBL activation, thiolation; 1.91A {Saccharomyces cerevisiae} SCOP: d.15.1.3 PDB: 2kq7_A 2zpn_A 3vxw_A 2kwc_A 2li5_A 3vh3_B 3vh4_B*
Probab=26.39 E-value=84 Score=24.21 Aligned_cols=47 Identities=17% Similarity=0.270 Sum_probs=35.6
Q ss_pred EEEEEcCCChHHHHHHHHHHHcCCCCCceEEEE-CCcccCCCCCcccC
Q 027553 161 KQFRVYADDKFERLFKMYADKVNLDQENLVFCF-DGDKIGPEATPASL 207 (222)
Q Consensus 161 v~FkIk~tT~L~KLf~aYaer~gl~~~~lrF~F-DG~rI~~~~TP~sL 207 (222)
..|.|..+.++..++..-.++++++++.--|+| |+.....+.|..+|
T Consensus 49 ~KflVp~~~tv~qf~~~iRkrl~l~~~~alFl~Vn~~~p~~~~~m~~l 96 (118)
T 3rui_B 49 RKYLVPADLTVGQFVYVIRKRIMLPPEKAIFIFVNDTLPPTAALMSAI 96 (118)
T ss_dssp CEEEEETTSBHHHHHHHHHHHTTCCTTCCEEEEBTTBCCCTTSBHHHH
T ss_pred ceEEcCCCCCHHHHHHHHHHHhCcCCCccEEEEECCccCCccchHHHH
Confidence 479999999999999999999999886666666 66433345555444
No 175
>2zjd_A Microtubule-associated proteins 1A/1B light chain 3B precursor; autophagy, LC3, microtubule-associated protein 1 light chain 3, cytoplasm, cytoplasmic vesicle, lipoprotein; 1.56A {Homo sapiens} SCOP: d.15.1.3 PDB: 2z0e_B 2zzp_B 2z0d_B 1ugm_A 1v49_A 2k6q_A 3eci_A
Probab=24.23 E-value=1.4e+02 Score=23.32 Aligned_cols=57 Identities=18% Similarity=0.292 Sum_probs=42.7
Q ss_pred EEEEEcCCChHHHHHHHHHHHcCCCCCceEEE-ECCcccC-CCCCcccC-----CCCCCcEEEEE
Q 027553 161 KQFRVYADDKFERLFKMYADKVNLDQENLVFC-FDGDKIG-PEATPASL-----EMEDNDIIEVH 218 (222)
Q Consensus 161 v~FkIk~tT~L~KLf~aYaer~gl~~~~lrF~-FDG~rI~-~~~TP~sL-----gMEDGDiIDV~ 218 (222)
..|.|..+.++..++..-.++++++++.--|+ |-|..+. .+.|..+| + +||=..-.+
T Consensus 55 ~KflVp~~~tv~qf~~~iRkrL~l~~~~alFl~~vn~~~p~~~~~m~~lY~~~kd-eDGfLyv~Y 118 (130)
T 2zjd_A 55 TKFLVPDHVNMSELIKIIRRRLQLNANQAFFLLVNGHSMVSVSTPISEVYESEKD-EDGFLYMVY 118 (130)
T ss_dssp CEEEEETTCBHHHHHHHHHHHHTCCTTCCEEEEETTTEECCTTSBHHHHHHHHCC-TTSCEEEEE
T ss_pred cEEEcCCCCcHHHHHHHHHHHhCCCCCceEEEEEECCccCCccchHHHHHHHhCC-CCCEEEEEE
Confidence 47999999999999999999999999877777 8665554 45555555 3 566544433
No 176
>3au4_A Myosin-X; protein-protein complex, motor protein cargo transportation, protein-apoptosis complex; 1.90A {Homo sapiens} PDB: 3au5_A 3pzd_A
Probab=23.67 E-value=2.1e+02 Score=26.52 Aligned_cols=48 Identities=6% Similarity=0.135 Sum_probs=40.4
Q ss_pred CCcEEEEEEeCCce-EEEEEcCCChHHHHHHHHHHHcCCCC--CceEEEEC
Q 027553 147 RAKIVVSIQDKGGL-KQFRVYADDKFERLFKMYADKVNLDQ--ENLVFCFD 194 (222)
Q Consensus 147 ~~kItIkV~~qdg~-v~FkIk~tT~L~KLf~aYaer~gl~~--~~lrF~FD 194 (222)
+..|.++|.-.+|. +.|.|...++-+.|++.-|.++|+.. +.|-+++.
T Consensus 214 ~~~~~~~V~l~dg~~~~~~v~~~tt~~el~~~v~~~lgL~e~~~~FgL~~~ 264 (555)
T 3au4_A 214 RQEMTSTVYCHGGGSCKITINSHTTAGEVVEKLIRGLAMEDSRNMFALFEY 264 (555)
T ss_dssp TCCEEEEEEETTSCEEEEEECTTCBHHHHHHHHHHHTTCTTCCSEEEEEEE
T ss_pred CCCcceEEEecCCCeEEEEeCCCCcHHHHHHHHHHHcCCCCCCCceEEEEE
Confidence 45688899888887 78999999999999999999999963 56666653
No 177
>1v8c_A MOAD related protein; riken structural genomics/proteomics initiative, RSGI, structural genomics, protein binding; 1.60A {Thermus thermophilus} SCOP: d.15.3.1 d.129.5.1
Probab=23.14 E-value=1.4e+02 Score=23.93 Aligned_cols=54 Identities=7% Similarity=0.137 Sum_probs=36.9
Q ss_pred EEcCCChHHHHHHHHHHHcC-CC---------CCceEEEECCcccCCCCCcccCCCCCCcEEEEEe
Q 027553 164 RVYADDKFERLFKMYADKVN-LD---------QENLVFCFDGDKIGPEATPASLEMEDNDIIEVHT 219 (222)
Q Consensus 164 kIk~tT~L~KLf~aYaer~g-l~---------~~~lrF~FDG~rI~~~~TP~sLgMEDGDiIDV~i 219 (222)
.+.. +++..|++..+.++. +. ...+.+..||+.+...+ -.+--+.+||.|.++.
T Consensus 19 ev~~-~TV~dLl~~L~~~~p~l~~~l~~~~~l~~~v~VaVNg~~v~~~~-~~dt~L~dGDeVai~P 82 (168)
T 1v8c_A 19 ELPG-ATVGEVLENLVRAYPALKEELFEGEGLAERVSVFLEGRDVRYLQ-GLSTPLSPGATLDLFP 82 (168)
T ss_dssp ECCC-SBHHHHHHHHHHHCGGGHHHHEETTEECTTCEEEETTEEGGGTT-GGGCBCCTTCEEEEEC
T ss_pred EECC-CcHHHHHHHHHhhChhhhhhhhcccccCCcEEEEECCEECCCcC-CCccCCCCCCEEEEEC
Confidence 3433 788889888877642 11 35678999999987531 1223499999999874
No 178
>2dhz_A RAP guanine nucleotide exchange factor (GEF)- like 1; LINK guanine nucleotide exchange factor II, LINK-gefii, RA domain, structural genomics; NMR {Homo sapiens}
Probab=23.05 E-value=1.2e+02 Score=23.77 Aligned_cols=54 Identities=9% Similarity=0.092 Sum_probs=44.1
Q ss_pred CCCcEEEEEEeCCce-EEEEEcCCChHHHHHHHHHHHcCCC---------CCceEEEECCcccC
Q 027553 146 ERAKIVVSIQDKGGL-KQFRVYADDKFERLFKMYADKVNLD---------QENLVFCFDGDKIG 199 (222)
Q Consensus 146 ~~~kItIkV~~qdg~-v~FkIk~tT~L~KLf~aYaer~gl~---------~~~lrF~FDG~rI~ 199 (222)
+...|..+|-..+.. +.++++.+..-..|+.+-+++++.. +--+...+.|+++-
T Consensus 6 ~~Dei~~~VY~~Dhsy~tvr~~v~~sa~eIl~~va~kl~~~e~~~~~~~~l~Lv~V~ssGEk~v 69 (120)
T 2dhz_A 6 SGDEIFCRVYMPDHSYVTIRSRLSASVQDILGSVTEKLQYSEEPAGREDSLILVAVSSSGEKVL 69 (120)
T ss_dssp SCCCEEECEECTTSCCCCEEECTTCCHHHHHHHHHHHSTTCSSTTSCCSCCEEEEEETTCCCEE
T ss_pred CCCcEEEEEEeccCceEEEEEeccccHHHHHHHHHHHhccccccccccCceEEEEEccCCcEee
Confidence 456788888877765 7889999999999999999999874 34566778998875
No 179
>1gri_A Growth factor bound protein 2; SH2, SH3, signal transduction adaptor; 3.10A {Homo sapiens} SCOP: b.34.2.1 b.34.2.1 d.93.1.1 PDB: 1aze_A 2a37_A 2azv_A 2a36_A 2azs_A
Probab=22.20 E-value=2.9e+02 Score=21.75 Aligned_cols=68 Identities=16% Similarity=0.281 Sum_probs=42.5
Q ss_pred CcEEEEEEeCCceEEEEEcCC------------ChHHHHHHHHHHHcCCCC----------------CceEEEECCcccC
Q 027553 148 AKIVVSIQDKGGLKQFRVYAD------------DKFERLFKMYADKVNLDQ----------------ENLVFCFDGDKIG 199 (222)
Q Consensus 148 ~kItIkV~~qdg~v~FkIk~t------------T~L~KLf~aYaer~gl~~----------------~~lrF~FDG~rI~ 199 (222)
...+|.+...+...||+|.+. ..+..|.+.|... .+.. ..++=+|+=
T Consensus 93 g~~~LSv~~~~~v~h~~I~~~~~g~~~~~~~~f~sl~eLv~~~~~~-~~~~~~~~~l~~~~~~~~~~~~~~al~~y---- 167 (217)
T 1gri_A 93 GDFSLSVKFGNDVQHFKVLRDGAGKYFLWVVKFNSLNELVDYHRST-SVSRNQQIFLRDIEQVPQQPTYVQALFDF---- 167 (217)
T ss_dssp TCEEEEEEETTEEEEEEEEECSSSCEESSSCEESSHHHHHHHHHHS-CSSSSTTCCCCBCCCCCCCCCEEEESSCC----
T ss_pred CCEEEEEEECCEEEEEEEEEcCCCCEEEeeeEcCCHHHHHHhhhcc-ccccccceeecccccCCCCceEEEecCCc----
Confidence 346777776555568888753 4678888888653 2211 112222221
Q ss_pred CCCCcccCCCCCCcEEEEEec
Q 027553 200 PEATPASLEMEDNDIIEVHTK 220 (222)
Q Consensus 200 ~~~TP~sLgMEDGDiIDV~ik 220 (222)
....+.+|.+.-||+|.|..+
T Consensus 168 ~~~~~~eL~~~~Gd~i~v~~~ 188 (217)
T 1gri_A 168 DPQEDGELGFRRGDFIHVMDN 188 (217)
T ss_dssp CCSSTTBCCCCTTCEEEEEEC
T ss_pred cCCCCCcCCCCCCCEEEEEEe
Confidence 124567999999999999764
No 180
>1wgy_A RAP guanine nucleotide exchange factor 5; ubiquitin fold, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Homo sapiens} SCOP: d.15.1.5
Probab=21.03 E-value=1.9e+02 Score=22.03 Aligned_cols=72 Identities=17% Similarity=0.225 Sum_probs=50.1
Q ss_pred CCCcEEEEEEeCCce-EEEEEcCCChHHHHHHHHHHHcCCCC---CceEEEECCcccC--CCCCcccCCCCCCcEEEE
Q 027553 146 ERAKIVVSIQDKGGL-KQFRVYADDKFERLFKMYADKVNLDQ---ENLVFCFDGDKIG--PEATPASLEMEDNDIIEV 217 (222)
Q Consensus 146 ~~~kItIkV~~qdg~-v~FkIk~tT~L~KLf~aYaer~gl~~---~~lrF~FDG~rI~--~~~TP~sLgMEDGDiIDV 217 (222)
.+..|..+|-..+.. +..+++.+..-+.|+.+-+++++... --+...+.|+++- +++..-.-.|.-+-.|-|
T Consensus 6 ~sD~i~~~Vy~~Dhsy~tvr~~v~~sa~eIl~~va~kl~~~~e~l~Lv~v~ssGEk~~lqp~d~si~tsL~~NgRLfv 83 (104)
T 1wgy_A 6 SGEEIFCHVYITEHSYVSVKAKVSSIAQEILKVVAEKIQYAEEDLALVAITFSGEKHELQPNDLVISKSLEASGRIYV 83 (104)
T ss_dssp CSSCCCEEEECSSSCEEEECCCTTCBSHHHHHHHHHHHTSCGGGEEEEEECSSCCCCBCCTTSBSSCCSSCSSCEEEE
T ss_pred CCCceEEEEEeccCceEEEEEeccchHHHHHHHHHHHhcCCccceEEEEEccCCcEeecCCcceEEEeeccccceEEE
Confidence 456777888777765 78899999999999999999999754 3455667999875 344433333333334443
No 181
>3m95_A Autophagy related protein ATG8; alpha slash beta, receptor, transport protein; 2.40A {Bombyx mori} SCOP: d.15.1.3
Probab=20.71 E-value=99 Score=24.17 Aligned_cols=59 Identities=22% Similarity=0.275 Sum_probs=41.1
Q ss_pred EEEEEcCCChHHHHHHHHHHHcCCCCCceEEEE-CCcccCCCCCcccC----CCCCCcEEEEEe
Q 027553 161 KQFRVYADDKFERLFKMYADKVNLDQENLVFCF-DGDKIGPEATPASL----EMEDNDIIEVHT 219 (222)
Q Consensus 161 v~FkIk~tT~L~KLf~aYaer~gl~~~~lrF~F-DG~rI~~~~TP~sL----gMEDGDiIDV~i 219 (222)
..|.|..+.++..++..-.++++++++.--|+| |+...+.+.|..+| .=+||=..-.+-
T Consensus 55 ~KflVp~~~tv~qf~~~IRkrl~L~~~~alFl~Vnn~lPs~s~~m~~lY~~~kdeDGfLY~~Ys 118 (125)
T 3m95_A 55 KKYLVPSDLTVGQFYFLIRKRIHLRPEDALFFFVNNVIPPTSATMGSLYQEHHDEDFFLYIAFS 118 (125)
T ss_dssp CEEEEETTSBHHHHHHHHHHHTTCCTTSCCEEEBTTBCCCTTSBHHHHHHHHCCTTSCEEEEEE
T ss_pred CEEEcCCCCEeeeehhhhHhhcCCCccccEEEEECCccCCccchHHHHHHHcCCCCCeEEEEec
Confidence 479999999999999999999999887655666 65433345555544 125665554443
No 182
>2nvu_B Maltose binding protein/NEDD8-activating enzyme E1 catalytic subunit chimera; multifunction macromolecular complex, ubiquitin, ATP, conformational change, thioester, switch, adenylation, protein turnover, ligase; HET: ATP; 2.80A {Homo sapiens} SCOP: c.111.1.2 c.94.1.1
Probab=20.35 E-value=1.9e+02 Score=28.00 Aligned_cols=58 Identities=9% Similarity=0.141 Sum_probs=42.6
Q ss_pred EEEEEcCCChHHHHHHHHHHHcC--CCCCc--------eEEEECCc--------ccCCCCCcccCCCCCCcEEEEE
Q 027553 161 KQFRVYADDKFERLFKMYADKVN--LDQEN--------LVFCFDGD--------KIGPEATPASLEMEDNDIIEVH 218 (222)
Q Consensus 161 v~FkIk~tT~L~KLf~aYaer~g--l~~~~--------lrF~FDG~--------rI~~~~TP~sLgMEDGDiIDV~ 218 (222)
..+.+..+.+|+.+.+.+|.+.. +.... .+.+|... +-+...|-.+||+.+|.+|.|.
T Consensus 714 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ly~~~~~~~~~~~~~~l~~~l~~l~~~~~~~~~~~ 789 (805)
T 2nvu_B 714 QNIQFSPSAKLQEVLDYLTNSASLQMKSPAITATLEGKNRTLYLQSVTSIEERTRPNLSKTLKELGLVDGQELAVA 789 (805)
T ss_dssp EEEEECTTSBHHHHHHHHHHCTTTCCSSCEEEEEETTEEEEEECCSSHHHHHHHGGGGGSBTTTTTCCTTCEEEEE
T ss_pred EEEEECCcChHHHHHHHHHhhhccCcccceEEEEccCCCcEEEecCccchhhhhHhhhcCCHHHcCCCCCCEEEEE
Confidence 57888888899999999999755 43333 35567532 2234678899999999999875
No 183
>2fpe_A C-JUN-amino-terminal kinase interacting protein 1; SRC-homology 3 (SH3) domain, all beta structure, signaling protein; HET: P6G; 1.75A {Rattus norvegicus} PDB: 2fpd_A*
Probab=20.33 E-value=67 Score=20.64 Aligned_cols=18 Identities=28% Similarity=0.305 Sum_probs=15.5
Q ss_pred CCcccCCCCCCcEEEEEe
Q 027553 202 ATPASLEMEDNDIIEVHT 219 (222)
Q Consensus 202 ~TP~sLgMEDGDiIDV~i 219 (222)
..+.+|.+.-||+|.|..
T Consensus 15 ~~~~eLs~~~Gd~i~v~~ 32 (62)
T 2fpe_A 15 RHEDELELEVDDPLLVEL 32 (62)
T ss_dssp SSTTBCCBCTTCEEEEEE
T ss_pred cCcCcCcCCCCCEEEEEE
Confidence 467899999999999964
Done!