Query 027555
Match_columns 222
No_of_seqs 127 out of 1092
Neff 8.2
Searched_HMMs 46136
Date Fri Mar 29 11:40:44 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/027555.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/027555hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 cd03750 proteasome_alpha_type_ 100.0 2.4E-60 5.3E-65 394.6 27.8 212 4-217 1-216 (227)
2 cd03755 proteasome_alpha_type_ 100.0 6.3E-60 1.4E-64 387.0 26.4 206 4-210 1-207 (207)
3 cd03751 proteasome_alpha_type_ 100.0 9.1E-60 2E-64 387.1 26.4 207 2-210 2-212 (212)
4 cd03752 proteasome_alpha_type_ 100.0 1.6E-59 3.6E-64 386.1 26.6 208 2-210 1-213 (213)
5 TIGR03633 arc_protsome_A prote 100.0 5.2E-59 1.1E-63 385.9 27.9 214 2-217 1-219 (224)
6 cd03754 proteasome_alpha_type_ 100.0 7E-59 1.5E-63 382.8 26.2 207 3-210 1-215 (215)
7 PTZ00246 proteasome subunit al 100.0 1.8E-58 3.8E-63 389.1 28.1 212 2-214 3-219 (253)
8 cd03756 proteasome_alpha_arche 100.0 3.4E-58 7.4E-63 377.8 26.9 207 3-211 1-210 (211)
9 PRK03996 proteasome subunit al 100.0 4.4E-58 9.5E-63 384.2 27.4 212 2-215 8-222 (241)
10 cd03749 proteasome_alpha_type_ 100.0 8.4E-58 1.8E-62 375.4 26.5 203 4-210 1-210 (211)
11 cd01911 proteasome_alpha prote 100.0 1.7E-57 3.7E-62 373.1 25.2 205 4-209 1-208 (209)
12 cd03753 proteasome_alpha_type_ 100.0 5.1E-57 1.1E-61 371.3 25.8 205 4-210 1-213 (213)
13 KOG0176 20S proteasome, regula 100.0 4.7E-57 1E-61 352.6 19.3 215 1-217 5-227 (241)
14 KOG0183 20S proteasome, regula 100.0 4.6E-57 1E-61 356.5 18.5 213 1-214 1-216 (249)
15 COG0638 PRE1 20S proteasome, a 100.0 2.5E-55 5.4E-60 365.8 27.0 212 2-217 1-219 (236)
16 KOG0181 20S proteasome, regula 100.0 3.6E-54 7.7E-59 335.7 17.5 215 3-219 5-222 (233)
17 KOG0184 20S proteasome, regula 100.0 7.2E-53 1.6E-57 334.3 19.5 211 3-215 7-223 (254)
18 KOG0182 20S proteasome, regula 100.0 4.5E-51 9.8E-56 322.1 21.6 216 1-217 6-227 (246)
19 KOG0178 20S proteasome, regula 100.0 6.6E-50 1.4E-54 315.2 20.2 212 2-214 3-220 (249)
20 KOG0863 20S proteasome, regula 100.0 7.1E-47 1.5E-51 301.7 20.4 208 3-214 5-219 (264)
21 cd03759 proteasome_beta_type_3 100.0 4.1E-46 8.9E-51 302.6 24.1 187 29-220 2-194 (195)
22 cd03758 proteasome_beta_type_2 100.0 3.4E-46 7.4E-51 302.6 23.5 185 31-218 2-191 (193)
23 cd03760 proteasome_beta_type_4 100.0 1E-45 2.2E-50 300.8 23.2 186 29-217 1-194 (197)
24 cd03761 proteasome_beta_type_5 100.0 2.9E-45 6.4E-50 296.0 23.7 182 31-218 1-187 (188)
25 cd03757 proteasome_beta_type_1 100.0 9E-45 2E-49 298.3 23.6 190 27-221 5-208 (212)
26 TIGR03634 arc_protsome_B prote 100.0 3.1E-44 6.8E-49 289.2 23.5 180 30-215 1-185 (185)
27 cd03762 proteasome_beta_type_6 100.0 4.5E-44 9.8E-49 289.0 23.8 183 31-219 1-188 (188)
28 TIGR03690 20S_bact_beta protea 100.0 3.3E-44 7.1E-49 296.3 23.5 189 29-218 1-202 (219)
29 TIGR03691 20S_bact_alpha prote 100.0 1.1E-43 2.4E-48 294.1 25.0 187 20-214 17-211 (228)
30 cd03764 proteasome_beta_archea 100.0 2.8E-43 6.2E-48 284.3 24.0 182 31-218 1-187 (188)
31 cd03763 proteasome_beta_type_7 100.0 4.8E-43 1E-47 283.3 23.6 180 31-217 1-185 (189)
32 PTZ00488 Proteasome subunit be 100.0 4E-43 8.7E-48 294.0 23.5 186 26-217 35-225 (247)
33 cd03765 proteasome_beta_bacter 100.0 7.6E-43 1.7E-47 289.8 23.9 184 32-217 2-204 (236)
34 PF00227 Proteasome: Proteasom 100.0 7.2E-43 1.6E-47 281.6 23.0 183 27-210 1-190 (190)
35 cd01912 proteasome_beta protea 100.0 1.5E-42 3.3E-47 280.0 23.6 182 31-217 1-187 (189)
36 cd01906 proteasome_protease_Hs 100.0 2.8E-41 6.2E-46 270.6 23.6 177 31-210 1-182 (182)
37 KOG0177 20S proteasome, regula 100.0 1.8E-39 3.9E-44 252.4 17.0 185 31-218 2-191 (200)
38 KOG0179 20S proteasome, regula 100.0 8.6E-38 1.9E-42 246.4 18.8 190 27-221 26-231 (235)
39 KOG0174 20S proteasome, regula 100.0 1.5E-35 3.3E-40 231.2 16.0 189 26-220 15-208 (224)
40 KOG0175 20S proteasome, regula 100.0 5.6E-35 1.2E-39 236.7 15.0 186 27-218 68-258 (285)
41 KOG0185 20S proteasome, regula 100.0 1.2E-34 2.6E-39 232.1 15.5 207 8-217 13-234 (256)
42 KOG0173 20S proteasome, regula 100.0 1.1E-33 2.5E-38 228.6 16.4 187 23-216 30-221 (271)
43 KOG0180 20S proteasome, regula 100.0 4E-32 8.7E-37 208.5 17.3 188 28-220 6-199 (204)
44 PRK05456 ATP-dependent proteas 100.0 5.5E-31 1.2E-35 209.0 19.9 161 30-207 1-169 (172)
45 cd01901 Ntn_hydrolase The Ntn 100.0 7.4E-30 1.6E-34 198.8 21.5 160 31-195 1-163 (164)
46 cd01913 protease_HslV Protease 100.0 8.5E-30 1.8E-34 201.1 19.0 160 31-208 1-169 (171)
47 TIGR03692 ATP_dep_HslV ATP-dep 100.0 3E-29 6.5E-34 197.9 18.8 160 31-207 1-168 (171)
48 PF10584 Proteasome_A_N: Prote 99.5 5.8E-15 1.2E-19 77.0 2.1 23 4-26 1-23 (23)
49 COG3484 Predicted proteasome-t 99.3 2.7E-11 5.8E-16 96.2 11.8 181 31-213 2-201 (255)
50 COG5405 HslV ATP-dependent pro 99.2 1.6E-10 3.4E-15 88.8 11.3 156 29-201 3-163 (178)
51 PF09894 DUF2121: Uncharacteri 96.4 0.32 7E-06 39.1 14.8 44 168-211 131-178 (194)
52 COG4079 Uncharacterized protei 86.3 19 0.00041 30.3 13.2 152 31-212 2-180 (293)
53 KOG3361 Iron binding protein i 81.5 2.6 5.7E-05 31.9 4.0 42 147-188 71-113 (157)
54 smart00481 POLIIIAc DNA polyme 59.0 13 0.00027 24.1 3.0 32 9-40 6-38 (67)
55 PRK00912 ribonuclease P protei 49.7 20 0.00043 29.6 3.4 38 1-39 1-38 (237)
56 PF05681 Fumerase: Fumarate hy 44.6 2E+02 0.0044 24.6 9.3 100 107-209 79-181 (271)
57 PRK07328 histidinol-phosphatas 44.3 27 0.00058 29.4 3.4 39 1-39 1-40 (269)
58 PF07499 RuvA_C: RuvA, C-termi 43.9 19 0.00041 21.9 1.8 31 163-193 13-45 (47)
59 PRK09732 hypothetical protein; 42.3 80 0.0017 23.9 5.4 39 180-219 5-44 (134)
60 PF04539 Sigma70_r3: Sigma-70 38.2 54 0.0012 21.7 3.6 31 85-115 3-33 (78)
61 PF05117 DUF695: Family of unk 34.8 1.3E+02 0.0028 22.3 5.6 35 186-220 60-94 (136)
62 COG1754 Uncharacterized C-term 33.2 26 0.00057 30.1 1.6 56 134-192 77-135 (298)
63 KOG3652 Uncharacterized conser 32.8 85 0.0018 30.5 4.9 116 73-200 191-307 (1215)
64 COG3193 GlcG Uncharacterized p 31.9 1.5E+02 0.0032 22.8 5.4 40 179-219 5-45 (141)
65 PF01242 PTPS: 6-pyruvoyl tetr 30.8 1.1E+02 0.0025 22.2 4.6 46 75-120 43-98 (123)
66 PF06057 VirJ: Bacterial virul 30.8 63 0.0014 26.2 3.3 33 102-138 44-76 (192)
67 PF02811 PHP: PHP domain; Int 30.0 48 0.001 25.1 2.6 31 9-39 7-38 (175)
68 COG0279 GmhA Phosphoheptose is 28.1 76 0.0016 25.2 3.3 35 11-45 116-151 (176)
69 COG0161 BioA Adenosylmethionin 27.1 1.5E+02 0.0033 27.3 5.5 85 108-200 6-103 (449)
70 COG4831 Roadblock/LC7 domain [ 25.9 31 0.00068 24.6 0.7 10 10-19 19-28 (109)
71 PRK15390 fumarate hydratase Fu 25.7 4.4E+02 0.0096 25.0 8.3 103 107-211 126-233 (548)
72 PRK08230 tartrate dehydratase 25.6 4.5E+02 0.0098 22.9 8.2 90 108-200 89-184 (299)
73 PF11211 DUF2997: Protein of u 24.9 1.2E+02 0.0026 18.7 3.1 32 147-178 3-34 (48)
74 PF07104 DUF1366: Protein of u 24.6 53 0.0012 24.3 1.8 50 149-199 11-61 (116)
75 PRK15391 fumarate hydratase Fu 24.1 5E+02 0.011 24.6 8.3 103 107-211 126-233 (548)
76 PRK02487 hypothetical protein; 23.2 2.9E+02 0.0062 21.4 5.8 39 177-217 18-57 (163)
77 cd04513 Glycosylasparaginase G 23.0 4.8E+02 0.01 22.2 7.4 59 159-217 186-249 (263)
78 COG4537 ComGC Competence prote 22.0 1.9E+02 0.0041 20.9 4.1 28 81-108 49-77 (107)
79 PF10632 He_PIG_assoc: He_PIG 21.9 1.1E+02 0.0024 16.7 2.2 22 131-154 5-26 (29)
80 COG1387 HIS2 Histidinol phosph 21.9 95 0.0021 25.8 3.0 28 9-37 9-36 (237)
81 KOG3087 Serine/threonine prote 21.8 2.6E+02 0.0056 23.1 5.3 46 143-191 74-120 (229)
82 PRK08123 histidinol-phosphatas 21.7 1.3E+02 0.0028 25.3 3.9 39 1-39 1-41 (270)
83 COG4728 Uncharacterized protei 20.7 1.1E+02 0.0024 22.2 2.6 30 63-92 10-39 (124)
84 PF14134 DUF4301: Domain of un 20.2 2.2E+02 0.0048 26.6 5.1 31 125-156 374-404 (513)
85 PRK15392 putative fumarate hyd 20.0 7.2E+02 0.016 23.6 8.4 62 108-170 126-191 (550)
No 1
>cd03750 proteasome_alpha_type_2 proteasome_alpha_type_2. The 20S proteasome, multisubunit proteolytic complex, is the central enzyme of nonlysosomal protein degradation in both the cytosol and nucleus. It is composed of 28 subunits arranged as four homoheptameric rings that stack on top of one another forming an elongated alpha-beta-beta-alpha cylinder with a central cavity. The proteasome alpha and beta subunits are members of the N-terminal nucleophile (Ntn)-hydrolase superfamily. Their N-terminal threonine residues are exposed as a nucleophile in peptide bond hydrolysis. Mammals have 7 alpha and 7 beta proteasome subunits while archaea have one of each.
Probab=100.00 E-value=2.4e-60 Score=394.56 Aligned_cols=212 Identities=41% Similarity=0.661 Sum_probs=204.4
Q ss_pred CCCCCeeeCCCCccchhhhHHHHHhcCCcEEEEEeCCEEEEEEeecccccccccCccccEEEecCcEEEEEeccHHHHHH
Q 027555 4 YDRAITVFSPDGHLFQVEYALEAVRKGNAAVGVRGTDTIVLGVEKKSTVKLQDSRSVRKIVSLDNHIALACAGLKADARV 83 (222)
Q Consensus 4 yd~~~~~fsp~G~l~q~eya~~a~~~G~t~igi~~~dgVvla~d~~~~~~l~~~~~~~Ki~~i~~~i~~~~sG~~~D~~~ 83 (222)
||+.+|+|||||||+|||||++|+++|+|+|||+++||||||+|++.+++++.+++.+||++|++|++|++||..+|++.
T Consensus 1 yd~~~t~fsp~Grl~QveyA~~av~~G~t~igik~~dgVvlaad~~~~~~l~~~~~~~KI~~I~~~i~~~~sG~~~D~~~ 80 (227)
T cd03750 1 YSFSLTTFSPSGKLVQIEYALAAVSSGAPSVGIKAANGVVLATEKKVPSPLIDESSVHKVEQITPHIGMVYSGMGPDFRV 80 (227)
T ss_pred CCCCCceECCCCeEhHHHHHHHHHHcCCCEEEEEeCCEEEEEEeecCCccccCCCCcceEEEEcCCEEEEEeEcHHhHHH
Confidence 89999999999999999999999999999999999999999999999877888889999999999999999999999999
Q ss_pred HHHHHHHHHHHhhhhcCCCCCHHHHHHHHHHHHHhhcccCCCccceeeeEEEEEeCCCCccEEEEECCCCceecccEEEe
Q 027555 84 LINRARIECQSHRLTVEDPVTVEYITRYIAGLQQKYTQSGGVRPFGLSTLIVGFDPYTGVPSLYQTDPSGTFSAWKANAT 163 (222)
Q Consensus 84 l~~~~~~~~~~~~~~~~~~i~~~~la~~ls~~~~~~~~~~~~rP~~v~~ivaG~d~~~~gp~ly~iD~~G~~~~~~~~a~ 163 (222)
+.+.+|.+++.|++++|++++++.+|++|++.+|+|+++++.|||+|++||+|||+ .||+||.+||+|++.+++++|+
T Consensus 81 l~~~~r~~~~~~~~~~~~~~~v~~la~~l~~~~~~~t~~~~~rP~~v~~li~G~D~--~g~~Ly~~d~~G~~~~~~~~a~ 158 (227)
T cd03750 81 LVKKARKIAQQYYLVYGEPIPVSQLVREIASVMQEYTQSGGVRPFGVSLLIAGWDE--GGPYLYQVDPSGSYFTWKATAI 158 (227)
T ss_pred HHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHhcCCCCCCChheEEEEEEEeC--CCCEEEEECCCCCEEeeeEEEE
Confidence 99999999999999999999999999999999999999999999999999999994 6899999999999999999999
Q ss_pred cCChHHHHHHHHhhcCCCCh-HHHHHHHHHHHHHHhhcC--CCceEEEEEecC-ceEE
Q 027555 164 GRNSNSMREFLEKNYKETSG-QETIKLAIRALLEVCSFL--YFRMSLGMVITK-YYEH 217 (222)
Q Consensus 164 G~g~~~~~~~Le~~~~~~ls-~ea~~l~~~~l~~~~~~d--~~~~~v~~v~~~-~~~~ 217 (222)
|+|+++++++||++|+++|+ +||++++++||+.+.+|+ ..++++.+|+++ +++.
T Consensus 159 G~g~~~~~~~Le~~~~~~ms~eeai~l~~~~l~~~~~~~l~~~~iev~iv~~~~~~~~ 216 (227)
T cd03750 159 GKNYSNAKTFLEKRYNEDLELEDAIHTAILTLKEGFEGQMTEKNIEIGICGETKGFRL 216 (227)
T ss_pred CCCCHHHHHHHHhhccCCCCHHHHHHHHHHHHHHHhcccCCCCcEEEEEEECCCCEEE
Confidence 99999999999999999999 999999999999999987 679999999974 6664
No 2
>cd03755 proteasome_alpha_type_7 proteasome_alpha_type_7. The 20S proteasome, multisubunit proteolytic complex, is the central enzyme of nonlysosomal protein degradation in both the cytosol and nucleus. It is composed of 28 subunits arranged as four homoheptameric rings that stack on top of one another forming an elongated alpha-beta-beta-alpha cylinder with a central cavity. The proteasome alpha and beta subunits are members of the N-terminal nucleophile (Ntn)-hydrolase superfamily. Their N-terminal threonine residues are exposed as a nucleophile in peptide bond hydrolysis. Mammals have 7 alpha and 7 beta proteasome subunits while archaea have one of each.
Probab=100.00 E-value=6.3e-60 Score=387.01 Aligned_cols=206 Identities=78% Similarity=1.162 Sum_probs=199.3
Q ss_pred CCCCCeeeCCCCccchhhhHHHHHhcCCcEEEEEeCCEEEEEEeecccccccccCccccEEEecCcEEEEEeccHHHHHH
Q 027555 4 YDRAITVFSPDGHLFQVEYALEAVRKGNAAVGVRGTDTIVLGVEKKSTVKLQDSRSVRKIVSLDNHIALACAGLKADARV 83 (222)
Q Consensus 4 yd~~~~~fsp~G~l~q~eya~~a~~~G~t~igi~~~dgVvla~d~~~~~~l~~~~~~~Ki~~i~~~i~~~~sG~~~D~~~ 83 (222)
||+++|+|||||||+|+|||++|+++|+|+|||+++||||||+|++.+..++.+++.+||++|++|++|++||+.+|++.
T Consensus 1 ~d~~~~~fsp~Gr~~Qveya~~av~~G~t~Igik~~dgVvlaad~~~~~~~~~~~~~~KI~~I~~~i~~~~sG~~~D~~~ 80 (207)
T cd03755 1 YDRAITVFSPDGHLFQVEYAQEAVRKGTTAVGVRGKDCVVLGVEKKSVAKLQDPRTVRKICMLDDHVCLAFAGLTADARV 80 (207)
T ss_pred CCCCCceECCCCeEeHHHHHHHHHHcCCCEEEEEeCCEEEEEEecCCCCcccCCCccCcEEEECCCEEEEEecchhhHHH
Confidence 89999999999999999999999999999999999999999999998777777778999999999999999999999999
Q ss_pred HHHHHHHHHHHhhhhcCCCCCHHHHHHHHHHHHHhhcccCCCccceeeeEEEEEeCCCCccEEEEECCCCceecccEEEe
Q 027555 84 LINRARIECQSHRLTVEDPVTVEYITRYIAGLQQKYTQSGGVRPFGLSTLIVGFDPYTGVPSLYQTDPSGTFSAWKANAT 163 (222)
Q Consensus 84 l~~~~~~~~~~~~~~~~~~i~~~~la~~ls~~~~~~~~~~~~rP~~v~~ivaG~d~~~~gp~ly~iD~~G~~~~~~~~a~ 163 (222)
+.+++|.+++.|+++++++|+++.+++++++++|+|+++++.|||+|++||+|||+ +++|+||.+||+|++.+++++|+
T Consensus 81 l~~~~r~~~~~~~~~~~~~i~~~~la~~ls~~~~~y~~~~~~rP~~vs~ii~G~D~-~~~p~Ly~iD~~G~~~~~~~~a~ 159 (207)
T cd03755 81 LINRARLECQSHRLTVEDPVTVEYITRYIAGLQQRYTQSGGVRPFGISTLIVGFDP-DGTPRLYQTDPSGTYSAWKANAI 159 (207)
T ss_pred HHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHhcccCcccceeEEEEEEEeC-CCCeEEEEECCCcCEEcceEEEE
Confidence 99999999999999999999999999999999999999999999999999999997 67999999999999999999999
Q ss_pred cCChHHHHHHHHhhcCCCCh-HHHHHHHHHHHHHHhhcCCCceEEEEE
Q 027555 164 GRNSNSMREFLEKNYKETSG-QETIKLAIRALLEVCSFLYFRMSLGMV 210 (222)
Q Consensus 164 G~g~~~~~~~Le~~~~~~ls-~ea~~l~~~~l~~~~~~d~~~~~v~~v 210 (222)
|+|+..++++||++|+|+|+ +||++++++||+.+.+-+..++||++|
T Consensus 160 G~gs~~~~~~Le~~~~~~ms~eeai~l~~~~l~~~~~~~~~~~e~~~~ 207 (207)
T cd03755 160 GRNSKTVREFLEKNYKEEMTRDDTIKLAIKALLEVVQSGSKNIELAVM 207 (207)
T ss_pred CCCCHHHHHHHHhhccCCCCHHHHHHHHHHHHHHHhCCCCCeEEEEEC
Confidence 99999999999999999999 999999999999999977889999864
No 3
>cd03751 proteasome_alpha_type_3 proteasome_alpha_type_3. The 20S proteasome, multisubunit proteolytic complex, is the central enzyme of nonlysosomal protein degradation in both the cytosol and nucleus. It is composed of 28 subunits arranged as four homoheptameric rings that stack on top of one another forming an elongated alpha-beta-beta-alpha cylinder with a central cavity. The proteasome alpha and beta subunits are members of the N-terminal nucleophile (Ntn)-hydrolase superfamily. Their N-terminal threonine residues are exposed as a nucleophile in peptide bond hydrolysis. Mammals have 7 alpha and 7 beta proteasome subunits while archaea have one of each.
Probab=100.00 E-value=9.1e-60 Score=387.14 Aligned_cols=207 Identities=37% Similarity=0.548 Sum_probs=198.5
Q ss_pred CCCCCCCeeeCCCCccchhhhHHHHHhcCCcEEEEEeCCEEEEEEeecccccccccCccccEEEecCcEEEEEeccHHHH
Q 027555 2 ARYDRAITVFSPDGHLFQVEYALEAVRKGNAAVGVRGTDTIVLGVEKKSTVKLQDSRSVRKIVSLDNHIALACAGLKADA 81 (222)
Q Consensus 2 ~~yd~~~~~fsp~G~l~q~eya~~a~~~G~t~igi~~~dgVvla~d~~~~~~l~~~~~~~Ki~~i~~~i~~~~sG~~~D~ 81 (222)
.+||+++|+|||||||+|+|||++|+++|+|+|||+++||||||+|++.++.+..+++.+|||+|++|++|++||+.+|+
T Consensus 2 ~~yd~~~t~fsp~Grl~Qveya~~a~~~G~tvIgik~kdgVvla~d~r~~~~~~~~~~~~KI~~I~~~i~~~~sG~~~D~ 81 (212)
T cd03751 2 TGYDLSASTFSPDGRVFQVEYANKAVENSGTAIGIRCKDGVVLAVEKLVTSKLYEPGSNKRIFNVDRHIGIAVAGLLADG 81 (212)
T ss_pred CCccCCCceECCCCcchHHHHHHHHHhcCCCEEEEEeCCEEEEEEEccccccccCcchhcceeEecCcEEEEEEEChHhH
Confidence 58999999999999999999999999999999999999999999999998877777789999999999999999999999
Q ss_pred HHHHHHHHHHHHHhhhhcCCCCCHHHHHHHHHHHHHhhcccCCCccceeeeEEEEEeCCCCccEEEEECCCCceecccEE
Q 027555 82 RVLINRARIECQSHRLTVEDPVTVEYITRYIAGLQQKYTQSGGVRPFGLSTLIVGFDPYTGVPSLYQTDPSGTFSAWKAN 161 (222)
Q Consensus 82 ~~l~~~~~~~~~~~~~~~~~~i~~~~la~~ls~~~~~~~~~~~~rP~~v~~ivaG~d~~~~gp~ly~iD~~G~~~~~~~~ 161 (222)
+.+.+++|.+++.|+++++++++++.+|++|++++|.|++++++|||+|++||+||| ++||+||.+||+|++.+++++
T Consensus 82 ~~l~~~~r~~~~~y~~~~~~~~~v~~la~~ls~~~~~~t~~~~~rP~~vs~li~G~D--~~gp~Ly~~D~~Gs~~~~~~~ 159 (212)
T cd03751 82 RHLVSRAREEAENYRDNYGTPIPVKVLADRVAMYMHAYTLYSSVRPFGCSVLLGGYD--SDGPQLYMIEPSGVSYGYFGC 159 (212)
T ss_pred HHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHhccCCCcCCceEEEEEEEEe--CCcCEEEEECCCCCEEeeEEE
Confidence 999999999999999999999999999999999999999999999999999999999 468999999999999999999
Q ss_pred EecCChHHHHHHHHhhcCCCCh-HHHHHHHHHHHHHHhhc---CCCceEEEEE
Q 027555 162 ATGRNSNSMREFLEKNYKETSG-QETIKLAIRALLEVCSF---LYFRMSLGMV 210 (222)
Q Consensus 162 a~G~g~~~~~~~Le~~~~~~ls-~ea~~l~~~~l~~~~~~---d~~~~~v~~v 210 (222)
|+|+|+..++++||++|+++|| +||+++++++|+.+++. +..++||+++
T Consensus 160 a~G~g~~~a~~~Lek~~~~dms~eeai~l~~~~L~~~~~~~~~~~~~iei~~~ 212 (212)
T cd03751 160 AIGKGKQAAKTELEKLKFSELTCREAVKEAAKIIYIVHDEIKDKAFELELSWV 212 (212)
T ss_pred EECCCCHHHHHHHHHhccCCCCHHHHHHHHHHHHHHHhhccCCCCccEEEEEC
Confidence 9999999999999999999999 99999999999999994 3679998864
No 4
>cd03752 proteasome_alpha_type_4 proteasome_alpha_type_4. The 20S proteasome, multisubunit proteolytic complex, is the central enzyme of nonlysosomal protein degradation in both the cytosol and nucleus. It is composed of 28 subunits arranged as four homoheptameric rings that stack on top of one another forming an elongated alpha-beta-beta-alpha cylinder with a central cavity. The proteasome alpha and beta subunits are members of the N-terminal nucleophile (Ntn)-hydrolase superfamily. Their N-terminal threonine residues are exposed as a nucleophile in peptide bond hydrolysis. Mammals have 7 alpha and 7 beta proteasome subunits while archaea have one of each.
Probab=100.00 E-value=1.6e-59 Score=386.13 Aligned_cols=208 Identities=41% Similarity=0.683 Sum_probs=199.1
Q ss_pred CCCCCCCeeeCCCCccchhhhHHHHHhcCCcEEEEEeCCEEEEEEeecccccccc-cCccccEEEecCcEEEEEeccHHH
Q 027555 2 ARYDRAITVFSPDGHLFQVEYALEAVRKGNAAVGVRGTDTIVLGVEKKSTVKLQD-SRSVRKIVSLDNHIALACAGLKAD 80 (222)
Q Consensus 2 ~~yd~~~~~fsp~G~l~q~eya~~a~~~G~t~igi~~~dgVvla~d~~~~~~l~~-~~~~~Ki~~i~~~i~~~~sG~~~D 80 (222)
.+||+++|+|||||||+|+|||+||+++|+|+|||+++||||||+|++.++++.. .++.+||++|+++++|++||..+|
T Consensus 1 ~~yd~~~~~fsp~Grl~Qveya~~a~~~G~t~igi~~~dgVvla~d~r~~~~~~~~~~~~~KI~~I~~~i~~~~sG~~~D 80 (213)
T cd03752 1 RRYDSRTTIFSPEGRLYQVEYAMEAISHAGTCLGILAKDGIVLAAEKKVTSKLLDQSFSSEKIYKIDDHIACAVAGITSD 80 (213)
T ss_pred CCcCCCCceECCCCEEhHHHhHHHHHhcCCCEEEEEeCCEEEEEEEeccCCcccCCCcCcceEEEecCCEEEEEecChHh
Confidence 4799999999999999999999999999999999999999999999999987554 458999999999999999999999
Q ss_pred HHHHHHHHHHHHHHhhhhcCCCCCHHHHHHHHHHHHHhhcccCCCccceeeeEEEEEeCCCCccEEEEECCCCceecccE
Q 027555 81 ARVLINRARIECQSHRLTVEDPVTVEYITRYIAGLQQKYTQSGGVRPFGLSTLIVGFDPYTGVPSLYQTDPSGTFSAWKA 160 (222)
Q Consensus 81 ~~~l~~~~~~~~~~~~~~~~~~i~~~~la~~ls~~~~~~~~~~~~rP~~v~~ivaG~d~~~~gp~ly~iD~~G~~~~~~~ 160 (222)
++.+.+++|.++..|+++++++|+++.+|+.|+..+|.|++.++.|||+|++||+|||+ +.||+||.+||+|++.++++
T Consensus 81 ~~~l~~~~r~~~~~~~~~~~~~i~v~~la~~ls~~~~~~t~~~~~RP~~v~~li~G~D~-~~g~~ly~~d~~G~~~~~~~ 159 (213)
T cd03752 81 ANILINYARLIAQRYLYSYQEPIPVEQLVQRLCDIKQGYTQYGGLRPFGVSFLYAGWDK-HYGFQLYQSDPSGNYSGWKA 159 (213)
T ss_pred HHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHhcCCCcccceeEEEEEEEeC-CCCCEEEEECCCCCeeeeeE
Confidence 99999999999999999999999999999999999999999999999999999999996 67899999999999999999
Q ss_pred EEecCChHHHHHHHHhhcCCCCh-HHHHHHHHHHHHHHhhcC---CCceEEEEE
Q 027555 161 NATGRNSNSMREFLEKNYKETSG-QETIKLAIRALLEVCSFL---YFRMSLGMV 210 (222)
Q Consensus 161 ~a~G~g~~~~~~~Le~~~~~~ls-~ea~~l~~~~l~~~~~~d---~~~~~v~~v 210 (222)
+|+|+++..++++||++|+|+|+ +||++++++||+.+.+|| ..+++++||
T Consensus 160 ~a~G~gs~~~~~~Le~~y~~~ms~eea~~l~~~al~~~~~r~~~~~~~~ei~~~ 213 (213)
T cd03752 160 TAIGNNNQAAQSLLKQDYKDDMTLEEALALAVKVLSKTMDSTKLTSEKLEFATL 213 (213)
T ss_pred EEECCCcHHHHHHHHHhccCCCCHHHHHHHHHHHHHHHHhccCCCCCcEEEEEC
Confidence 99999999999999999999999 999999999999999987 578888864
No 5
>TIGR03633 arc_protsome_A proteasome endopeptidase complex, archaeal, alpha subunit. This protein family describes the archaeal proteasome alpha subunit, homologous to both the beta subunit and to the alpha and beta subunits of eukaryotic proteasome subunits. This family is universal in the first 29 complete archaeal genomes but occasionally is duplicated.
Probab=100.00 E-value=5.2e-59 Score=385.87 Aligned_cols=214 Identities=48% Similarity=0.783 Sum_probs=205.0
Q ss_pred CCCCCCCeeeCCCCccchhhhHHHHHhcCCcEEEEEeCCEEEEEEeecccccccccCccccEEEecCcEEEEEeccHHHH
Q 027555 2 ARYDRAITVFSPDGHLFQVEYALEAVRKGNAAVGVRGTDTIVLGVEKKSTVKLQDSRSVRKIVSLDNHIALACAGLKADA 81 (222)
Q Consensus 2 ~~yd~~~~~fsp~G~l~q~eya~~a~~~G~t~igi~~~dgVvla~d~~~~~~l~~~~~~~Ki~~i~~~i~~~~sG~~~D~ 81 (222)
|+||.++|+|||||||+|+|||++++++|+|+|||+++||||||+|+|.+++++.+++.+||++|+++++|++||+.+|+
T Consensus 1 ~~~~~~~~~f~p~Grl~Qieya~~av~~G~tvigi~~~dgvvlaad~r~~~~~~~~~~~~KI~~i~~~i~~~~sG~~~D~ 80 (224)
T TIGR03633 1 MGYDRAITVFSPDGRLYQVEYAREAVKRGTTAVGIKTKDGVVLAVDKRITSKLVEPSSIEKIFKIDDHIGAATSGLVADA 80 (224)
T ss_pred CCCCCCCceECCCCeEeHHHHHHHHHHcCCCEEEEEECCEEEEEEeccCCccccCCCccceEEEECCCEEEEEeecHHhH
Confidence 79999999999999999999999999999999999999999999999998777777889999999999999999999999
Q ss_pred HHHHHHHHHHHHHhhhhcCCCCCHHHHHHHHHHHHHhhcccCCCccceeeeEEEEEeCCCCccEEEEECCCCceecccEE
Q 027555 82 RVLINRARIECQSHRLTVEDPVTVEYITRYIAGLQQKYTQSGGVRPFGLSTLIVGFDPYTGVPSLYQTDPSGTFSAWKAN 161 (222)
Q Consensus 82 ~~l~~~~~~~~~~~~~~~~~~i~~~~la~~ls~~~~~~~~~~~~rP~~v~~ivaG~d~~~~gp~ly~iD~~G~~~~~~~~ 161 (222)
+.+.+.++.++..|+++++++++++.+|+++++.+|.|+++++.|||+|++||||+| +++|+||.+||.|++.+++++
T Consensus 81 ~~l~~~~~~~~~~~~~~~~~~~~~~~la~~ls~~l~~~~~~~~~rP~~v~~ll~G~d--~~~~~Ly~~D~~G~~~~~~~~ 158 (224)
T TIGR03633 81 RVLIDRARIEAQINRLTYGEPIDVETLAKKICDLKQQYTQHGGVRPFGVALLIAGVD--DGGPRLFETDPSGALLEYKAT 158 (224)
T ss_pred HHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHhcCCCCccccceEEEEEEEe--CCcCEEEEECCCCCeecceEE
Confidence 999999999999999999999999999999999999999999999999999999999 578999999999999999999
Q ss_pred EecCChHHHHHHHHhhcCCCCh-HHHHHHHHHHHHHHhhcC--CCceEEEEEecCc--eEE
Q 027555 162 ATGRNSNSMREFLEKNYKETSG-QETIKLAIRALLEVCSFL--YFRMSLGMVITKY--YEH 217 (222)
Q Consensus 162 a~G~g~~~~~~~Le~~~~~~ls-~ea~~l~~~~l~~~~~~d--~~~~~v~~v~~~~--~~~ 217 (222)
++|+++.+++++||++|+|+|+ +||++++++||+.+.++. ..+++|++|++++ +++
T Consensus 159 a~G~g~~~~~~~L~~~~~~~~~~eeai~l~~~al~~~~~d~~~~~~i~i~ii~~~g~~~~~ 219 (224)
T TIGR03633 159 AIGAGRQAVTEFLEKEYREDLSLDEAIELALKALYSAVEDKLTPENVEVAYITVEDKKFRK 219 (224)
T ss_pred EECCCCHHHHHHHHHhccCCCCHHHHHHHHHHHHHHHhcccCCCCcEEEEEEEcCCCcEEE
Confidence 9999999999999999999999 999999999999999832 6799999999877 665
No 6
>cd03754 proteasome_alpha_type_6 proteasome_alpha_type_6. The 20S proteasome, multisubunit proteolytic complex, is the central enzyme of nonlysosomal protein degradation in both the cytosol and nucleus. It is composed of 28 subunits arranged as four homoheptameric rings that stack on top of one another forming an elongated alpha-beta-beta-alpha cylinder with a central cavity. The proteasome alpha and beta subunits are members of the N-terminal nucleophile (Ntn)-hydrolase superfamily. Their N-terminal threonine residues are exposed as a nucleophile in peptide bond hydrolysis. Mammals have 7 alpha and 7 beta proteasome subunits while archaea have one of each.
Probab=100.00 E-value=7e-59 Score=382.78 Aligned_cols=207 Identities=37% Similarity=0.609 Sum_probs=197.5
Q ss_pred CCCCCCeeeCCCCccchhhhHHHHHhc-CCcEEEEEeCCEEEEEEeecccccccccCccccEEEecCcEEEEEeccHHHH
Q 027555 3 RYDRAITVFSPDGHLFQVEYALEAVRK-GNAAVGVRGTDTIVLGVEKKSTVKLQDSRSVRKIVSLDNHIALACAGLKADA 81 (222)
Q Consensus 3 ~yd~~~~~fsp~G~l~q~eya~~a~~~-G~t~igi~~~dgVvla~d~~~~~~l~~~~~~~Ki~~i~~~i~~~~sG~~~D~ 81 (222)
+||+++|+|||||||+|+|||+||+++ |+|+|||+++||||||+|+|.+.+++.+++.+|||+|+++++|++||+.+|+
T Consensus 1 ~yd~~~~~fsp~Grl~Qveya~~a~~~~g~t~igi~~~d~Vvlaad~r~~~~~i~~~~~~Ki~~I~~~i~~~~sG~~~D~ 80 (215)
T cd03754 1 GFDRHITIFSPEGRLYQVEYAFKAVKNAGLTSVAVRGKDCAVVVTQKKVPDKLIDPSTVTHLFRITDEIGCVMTGMIADS 80 (215)
T ss_pred CCCCCCeeECCCCeEeHHHhHHHHHhcCCccEEEEEeCCEEEEEEeccccccccCCcccCceEEEcCCEEEEEEechhhH
Confidence 699999999999999999999999975 7899999999999999999998877666688999999999999999999999
Q ss_pred HHHHHHHHHHHHHhhhhcCCCCCHHHHHHHHHHHHHhhcccCCCccceeeeEEEEEeCCCCccEEEEECCCCceecccEE
Q 027555 82 RVLINRARIECQSHRLTVEDPVTVEYITRYIAGLQQKYTQSGGVRPFGLSTLIVGFDPYTGVPSLYQTDPSGTFSAWKAN 161 (222)
Q Consensus 82 ~~l~~~~~~~~~~~~~~~~~~i~~~~la~~ls~~~~~~~~~~~~rP~~v~~ivaG~d~~~~gp~ly~iD~~G~~~~~~~~ 161 (222)
+.+.+++|.++..|+++++++|+++.+|+++++++|.|+++++.|||+|++||||||+ ++||+||++||+|++.+++++
T Consensus 81 ~~l~~~~r~~~~~~~~~~~~~i~v~~la~~ls~~~q~yt~~~~~RP~~v~~ii~G~D~-~~gp~Ly~~Dp~Gs~~~~~~~ 159 (215)
T cd03754 81 RSQVQRARYEAAEFKYKYGYEMPVDVLAKRIADINQVYTQHAYMRPLGVSMILIGIDE-ELGPQLYKCDPAGYFAGYKAT 159 (215)
T ss_pred HHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHhCCCCCcCCeeEEEEEEEeC-CCCeEEEEEcCCccEEeEEEE
Confidence 9999999999999999999999999999999999999999999999999999999996 679999999999999999999
Q ss_pred EecCChHHHHHHHHhhcCCC--C--h-HHHHHHHHHHHHHHhhcC--CCceEEEEE
Q 027555 162 ATGRNSNSMREFLEKNYKET--S--G-QETIKLAIRALLEVCSFL--YFRMSLGMV 210 (222)
Q Consensus 162 a~G~g~~~~~~~Le~~~~~~--l--s-~ea~~l~~~~l~~~~~~d--~~~~~v~~v 210 (222)
|+|+|++.++++||++|+++ | + +||++++++||+.+++|| ..++||+||
T Consensus 160 a~G~gs~~~~~~Le~~~~~~~~~~~s~eeai~l~~~al~~~~~rd~~~~~~ei~~~ 215 (215)
T cd03754 160 AAGVKEQEATNFLEKKLKKKPDLIESYEETVELAISCLQTVLSTDFKATEIEVGVV 215 (215)
T ss_pred EECCCcHHHHHHHHHHhccccccCCCHHHHHHHHHHHHHHHhcccCCCCcEEEEEC
Confidence 99999999999999999995 7 9 999999999999999998 578998875
No 7
>PTZ00246 proteasome subunit alpha; Provisional
Probab=100.00 E-value=1.8e-58 Score=389.12 Aligned_cols=212 Identities=40% Similarity=0.642 Sum_probs=202.7
Q ss_pred CCCCCCCeeeCCCCccchhhhHHHHHhcCCcEEEEEeCCEEEEEEeecccccccc-cCccccEEEecCcEEEEEeccHHH
Q 027555 2 ARYDRAITVFSPDGHLFQVEYALEAVRKGNAAVGVRGTDTIVLGVEKKSTVKLQD-SRSVRKIVSLDNHIALACAGLKAD 80 (222)
Q Consensus 2 ~~yd~~~~~fsp~G~l~q~eya~~a~~~G~t~igi~~~dgVvla~d~~~~~~l~~-~~~~~Ki~~i~~~i~~~~sG~~~D 80 (222)
.+||+++|+|||||||+|+|||+||+++|+|+|||+++||||||+|++.+++++. .++.+|||+|+++|+|++||+.+|
T Consensus 3 ~~yd~~~~~fsp~Grl~QvEYA~~av~~g~t~Igik~~dgVvlaad~r~s~~~~~~~~~~~KI~~I~~~i~~~~sG~~~D 82 (253)
T PTZ00246 3 RRYDSRTTTFSPEGRLYQVEYALEAINNASLTVGILCKEGVILGADKPISSKLLDPGKINEKIYKIDSHIFCAVAGLTAD 82 (253)
T ss_pred CccCCCCceECCCCEEhHHHHHHHHHHhCCCEEEEEECCEEEEEEecCCCCcCccCCCCcccEEEecCCEEEEEEEcHHH
Confidence 4699999999999999999999999999999999999999999999999887554 456899999999999999999999
Q ss_pred HHHHHHHHHHHHHHhhhhcCCCCCHHHHHHHHHHHHHhhcccCCCccceeeeEEEEEeCCCCccEEEEECCCCceecccE
Q 027555 81 ARVLINRARIECQSHRLTVEDPVTVEYITRYIAGLQQKYTQSGGVRPFGLSTLIVGFDPYTGVPSLYQTDPSGTFSAWKA 160 (222)
Q Consensus 81 ~~~l~~~~~~~~~~~~~~~~~~i~~~~la~~ls~~~~~~~~~~~~rP~~v~~ivaG~d~~~~gp~ly~iD~~G~~~~~~~ 160 (222)
++.+.+.+|.++..|++.++++++++.+++.++..+|.|++++++|||+|++||||||+ ++||+||.+||+|++.++++
T Consensus 83 ~~~l~~~~r~~~~~~~~~~~~~~~v~~l~~~l~~~~q~~~~~~~~rP~~v~~li~G~D~-~~gp~Ly~~D~~Gs~~~~~~ 161 (253)
T PTZ00246 83 ANILINQCRLYAQRYRYTYGEPQPVEQLVVQICDLKQSYTQFGGLRPFGVSFLFAGYDE-NLGYQLYHTDPSGNYSGWKA 161 (253)
T ss_pred HHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHhccccCcccCCEEEEEEEEeC-CCCcEEEEECCCCCEecceE
Confidence 99999999999999999999999999999999999999999999999999999999996 68999999999999999999
Q ss_pred EEecCChHHHHHHHHhhcCCCCh-HHHHHHHHHHHHHHhhcC---CCceEEEEEecCc
Q 027555 161 NATGRNSNSMREFLEKNYKETSG-QETIKLAIRALLEVCSFL---YFRMSLGMVITKY 214 (222)
Q Consensus 161 ~a~G~g~~~~~~~Le~~~~~~ls-~ea~~l~~~~l~~~~~~d---~~~~~v~~v~~~~ 214 (222)
+|+|+|+.+++++||++|+++|+ +||++++++||+.+.+|| ..+++|++|++++
T Consensus 162 ~a~G~gs~~~~~~Le~~~~~~ms~eeai~l~~~al~~~~~~d~~s~~~vev~ii~~~~ 219 (253)
T PTZ00246 162 TAIGQNNQTAQSILKQEWKEDLTLEQGLLLAAKVLTKSMDSTSPKADKIEVGILSHGE 219 (253)
T ss_pred EEECCCcHHHHHHHHHhccCCCCHHHHHHHHHHHHHHHHhccCCCCCcEEEEEEecCC
Confidence 99999999999999999999999 999999999999999987 5899999998764
No 8
>cd03756 proteasome_alpha_archeal proteasome_alpha_archeal. The 20S proteasome, multisubunit proteolytic complex, is the central enzyme of nonlysosomal protein degradation in both the cytosol and nucleus. It is composed of 28 subunits arranged as four homoheptameric rings that stack on top of one another forming an elongated alpha-beta-beta-alpha cylinder with a central cavity. The proteasome alpha and beta subunits are members of the N-terminal nucleophile (Ntn)-hydrolase superfamily. Their N-terminal threonine residues are exposed as a nucleophile in peptide bond hydrolysis. Mammals have 7 alpha and 7 beta proteasome subunits while archaea have one of each.
Probab=100.00 E-value=3.4e-58 Score=377.80 Aligned_cols=207 Identities=49% Similarity=0.812 Sum_probs=199.9
Q ss_pred CCCCCCeeeCCCCccchhhhHHHHHhcCCcEEEEEeCCEEEEEEeecccccccccCccccEEEecCcEEEEEeccHHHHH
Q 027555 3 RYDRAITVFSPDGHLFQVEYALEAVRKGNAAVGVRGTDTIVLGVEKKSTVKLQDSRSVRKIVSLDNHIALACAGLKADAR 82 (222)
Q Consensus 3 ~yd~~~~~fsp~G~l~q~eya~~a~~~G~t~igi~~~dgVvla~d~~~~~~l~~~~~~~Ki~~i~~~i~~~~sG~~~D~~ 82 (222)
+||.++|+|||+|||+|+|||+|++++|+|+|||+++||||||+|++.+..+..+++.+||++|+++++|++||+.+|++
T Consensus 1 ~y~~~~~~fsp~G~l~Q~eya~~av~~G~t~igik~~dgvvla~d~~~~~~~~~~~~~~KI~~I~~~i~~~~sG~~~D~~ 80 (211)
T cd03756 1 GYDRAITVFSPDGRLYQVEYAREAVKRGTTALGIKCKEGVVLAVDKRITSKLVEPESIEKIYKIDDHVGAATSGLVADAR 80 (211)
T ss_pred CCCCCCceECCCCeEhHHHHHHHHHHcCCCEEEEEECCEEEEEEeccCCCcccCCCccceEEEEcCCEEEEEecCHHHHH
Confidence 69999999999999999999999999999999999999999999999987777778999999999999999999999999
Q ss_pred HHHHHHHHHHHHhhhhcCCCCCHHHHHHHHHHHHHhhcccCCCccceeeeEEEEEeCCCCccEEEEECCCCceecccEEE
Q 027555 83 VLINRARIECQSHRLTVEDPVTVEYITRYIAGLQQKYTQSGGVRPFGLSTLIVGFDPYTGVPSLYQTDPSGTFSAWKANA 162 (222)
Q Consensus 83 ~l~~~~~~~~~~~~~~~~~~i~~~~la~~ls~~~~~~~~~~~~rP~~v~~ivaG~d~~~~gp~ly~iD~~G~~~~~~~~a 162 (222)
.+.+.++.++..|+++++++++++.+++.++..+|.|++.+++|||+|++|||||| +++|+||.+||+|++.++++++
T Consensus 81 ~l~~~l~~~~~~~~~~~~~~~~~~~la~~ls~~~~~~~~~~~~rP~~v~~ll~G~D--~~~~~ly~vd~~G~~~~~~~~a 158 (211)
T cd03756 81 VLIDRARVEAQIHRLTYGEPIDVEVLVKKICDLKQQYTQHGGVRPFGVALLIAGVD--DGGPRLFETDPSGAYNEYKATA 158 (211)
T ss_pred HHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHhcCCCCeechhEEEEEEEEe--CCCCEEEEECCCCCeeeeEEEE
Confidence 99999999999999999999999999999999999999999999999999999999 4789999999999999999999
Q ss_pred ecCChHHHHHHHHhhcCCCCh-HHHHHHHHHHHHHHhhcC--CCceEEEEEe
Q 027555 163 TGRNSNSMREFLEKNYKETSG-QETIKLAIRALLEVCSFL--YFRMSLGMVI 211 (222)
Q Consensus 163 ~G~g~~~~~~~Le~~~~~~ls-~ea~~l~~~~l~~~~~~d--~~~~~v~~v~ 211 (222)
+|++++.++++||++|+|+|+ +||++++++||..+.+++ ..+++|++|+
T Consensus 159 ~G~g~~~~~~~Le~~~~~~m~~~ea~~l~~~~l~~~~~~~~~~~~~~v~ii~ 210 (211)
T cd03756 159 IGSGRQAVTEFLEKEYKEDMSLEEAIELALKALYAALEENETPENVEIAYVT 210 (211)
T ss_pred ECCCCHHHHHHHHhhccCCCCHHHHHHHHHHHHHHHhcccCCCCcEEEEEEe
Confidence 999999999999999999999 999999999999999987 6899999874
No 9
>PRK03996 proteasome subunit alpha; Provisional
Probab=100.00 E-value=4.4e-58 Score=384.21 Aligned_cols=212 Identities=49% Similarity=0.770 Sum_probs=204.0
Q ss_pred CCCCCCCeeeCCCCccchhhhHHHHHhcCCcEEEEEeCCEEEEEEeecccccccccCccccEEEecCcEEEEEeccHHHH
Q 027555 2 ARYDRAITVFSPDGHLFQVEYALEAVRKGNAAVGVRGTDTIVLGVEKKSTVKLQDSRSVRKIVSLDNHIALACAGLKADA 81 (222)
Q Consensus 2 ~~yd~~~~~fsp~G~l~q~eya~~a~~~G~t~igi~~~dgVvla~d~~~~~~l~~~~~~~Ki~~i~~~i~~~~sG~~~D~ 81 (222)
++||+++|+|||||||+|+|||++|+++|+|+|||+++||||||+|++.++.+..+++.+||++|+++++|++||..+|+
T Consensus 8 ~~y~~~~~~fsp~Gr~~Q~eya~~av~~G~t~igik~~dgVvlaad~r~~~~~~~~~~~~KI~~I~~~i~~~~sG~~~D~ 87 (241)
T PRK03996 8 MGYDRAITIFSPDGRLYQVEYAREAVKRGTTAVGVKTKDGVVLAVDKRITSPLIEPSSIEKIFKIDDHIGAASAGLVADA 87 (241)
T ss_pred cccCCCCceECCCCeEhHHHHHHHHHHhCCCEEEEEeCCEEEEEEeccCCCcccCCCccceEEEEcCCEEEEEcccHHHH
Confidence 58999999999999999999999999999999999999999999999998777777889999999999999999999999
Q ss_pred HHHHHHHHHHHHHhhhhcCCCCCHHHHHHHHHHHHHhhcccCCCccceeeeEEEEEeCCCCccEEEEECCCCceecccEE
Q 027555 82 RVLINRARIECQSHRLTVEDPVTVEYITRYIAGLQQKYTQSGGVRPFGLSTLIVGFDPYTGVPSLYQTDPSGTFSAWKAN 161 (222)
Q Consensus 82 ~~l~~~~~~~~~~~~~~~~~~i~~~~la~~ls~~~~~~~~~~~~rP~~v~~ivaG~d~~~~gp~ly~iD~~G~~~~~~~~ 161 (222)
+.+.+.++.++..|+++++++++++.+|+++++.+|.|+++++.|||+|++|||||| +.||+||.+||+|++.+++++
T Consensus 88 ~~l~~~~~~~~~~~~~~~~~~i~~~~la~~ls~~~~~~~~~~~~rP~~~~~ilaG~d--~~gp~Ly~id~~G~~~~~~~~ 165 (241)
T PRK03996 88 RVLIDRARVEAQINRLTYGEPIGVETLTKKICDHKQQYTQHGGVRPFGVALLIAGVD--DGGPRLFETDPSGAYLEYKAT 165 (241)
T ss_pred HHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHhcCCCCccchheEEEEEEEe--CCcCEEEEECCCCCeecceEE
Confidence 999999999999999999999999999999999999999999999999999999999 468999999999999999999
Q ss_pred EecCChHHHHHHHHhhcCCCCh-HHHHHHHHHHHHHHhhcC--CCceEEEEEecCce
Q 027555 162 ATGRNSNSMREFLEKNYKETSG-QETIKLAIRALLEVCSFL--YFRMSLGMVITKYY 215 (222)
Q Consensus 162 a~G~g~~~~~~~Le~~~~~~ls-~ea~~l~~~~l~~~~~~d--~~~~~v~~v~~~~~ 215 (222)
|+|++++.++++||++|+++|+ +||++++++||+.+.+++ ..+++|+||+.++.
T Consensus 166 a~G~g~~~~~~~Le~~~~~~~s~eeai~l~~~al~~~~~~~~~~~~i~i~ii~~~~~ 222 (241)
T PRK03996 166 AIGAGRDTVMEFLEKNYKEDLSLEEAIELALKALAKANEGKLDPENVEIAYIDVETK 222 (241)
T ss_pred EECCCcHHHHHHHHHhcccCCCHHHHHHHHHHHHHHHhccCCCCCcEEEEEEECCCC
Confidence 9999999999999999999999 999999999999999875 67999999998774
No 10
>cd03749 proteasome_alpha_type_1 proteasome_alpha_type_1. The 20S proteasome, multisubunit proteolytic complex, is the central enzyme of nonlysosomal protein degradation in both the cytosol and nucleus. It is composed of 28 subunits arranged as four homoheptameric rings that stack on top of one another forming an elongated alpha-beta-beta-alpha cylinder with a central cavity. The proteasome alpha and beta subunits are members of the N-terminal nucleophile (Ntn)-hydrolase superfamily. Their N-terminal threonine residues are exposed as a nucleophile in peptide bond hydrolysis. Mammals have 7 alpha and 7 beta proteasome subunits while archaea have one of each.
Probab=100.00 E-value=8.4e-58 Score=375.43 Aligned_cols=203 Identities=41% Similarity=0.648 Sum_probs=193.9
Q ss_pred CCCCCeeeCCCCccchhhhHHHHHhcCCcEEEEEeCCEEEEEEeecccccccccCccccEEEecCcEEEEEeccHHHHHH
Q 027555 4 YDRAITVFSPDGHLFQVEYALEAVRKGNAAVGVRGTDTIVLGVEKKSTVKLQDSRSVRKIVSLDNHIALACAGLKADARV 83 (222)
Q Consensus 4 yd~~~~~fsp~G~l~q~eya~~a~~~G~t~igi~~~dgVvla~d~~~~~~l~~~~~~~Ki~~i~~~i~~~~sG~~~D~~~ 83 (222)
||+++|+|||||||+|+|||++|+++|+|+|||+++||||||+|++.++++. ++.+|||+|+++++|++||+.+|++.
T Consensus 1 yd~~~t~fsp~Grl~Qveya~~av~~G~t~IgIk~~dgVvlaad~r~~~~l~--~~~~KI~~I~~~i~~~~sG~~~D~~~ 78 (211)
T cd03749 1 YDTDVTTWSPQGRLFQVEYAMEAVKQGSATVGLKSKTHAVLVALKRATSELS--SYQKKIFKVDDHIGIAIAGLTADARV 78 (211)
T ss_pred CCCCCceECCCCeEeHHHHHHHHHhcCCCEEEEEeCCEEEEEEeccCccccC--CccccEEEeCCCEEEEEEeChHhHHH
Confidence 8999999999999999999999999999999999999999999999877653 36699999999999999999999999
Q ss_pred HHHHHHHHHHHhhhhcCCCCCHHHHHHHHHHHHHhhcccCCCccceeeeEEEEEeCCCCccEEEEECCCCceecccEEEe
Q 027555 84 LINRARIECQSHRLTVEDPVTVEYITRYIAGLQQKYTQSGGVRPFGLSTLIVGFDPYTGVPSLYQTDPSGTFSAWKANAT 163 (222)
Q Consensus 84 l~~~~~~~~~~~~~~~~~~i~~~~la~~ls~~~~~~~~~~~~rP~~v~~ivaG~d~~~~gp~ly~iD~~G~~~~~~~~a~ 163 (222)
+.+++|.++..|+++++++|+++.+|+.++..+|+++++.+.|||+|++||+|||+ .||+||.+||+|++.+++++|+
T Consensus 79 l~~~~r~~~~~~~~~~~~~~~v~~la~~is~~~~~~t~~~~~rP~~v~~ii~G~D~--~gp~Ly~~Dp~G~~~~~~~~a~ 156 (211)
T cd03749 79 LSRYMRQECLNYRFVYDSPIPVSRLVSKVAEKAQINTQRYGRRPYGVGLLIAGYDE--SGPHLFQTCPSGNYFEYKATSI 156 (211)
T ss_pred HHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHhcccCCCCceEEEEEEEEcC--CCCeEEEECCCcCEeeeeEEEE
Confidence 99999999999999999999999999999999999999989999999999999994 6899999999999999999999
Q ss_pred cCChHHHHHHHHhhcC--CCCh-HHHHHHHHHHHHHHhhcC----CCceEEEEE
Q 027555 164 GRNSNSMREFLEKNYK--ETSG-QETIKLAIRALLEVCSFL----YFRMSLGMV 210 (222)
Q Consensus 164 G~g~~~~~~~Le~~~~--~~ls-~ea~~l~~~~l~~~~~~d----~~~~~v~~v 210 (222)
|++++.++++||++|+ |+|+ +||+++++++|+.++++| ..++||++|
T Consensus 157 G~g~~~a~~~Le~~~~~~~~ms~ee~i~~~~~~l~~~~~~~~~~~~~~iei~ii 210 (211)
T cd03749 157 GARSQSARTYLERHFEEFEDCSLEELIKHALRALRETLPGEQELTIKNVSIAIV 210 (211)
T ss_pred CCCcHHHHHHHHHhhccccCCCHHHHHHHHHHHHHHHhccCCCCCCCcEEEEEE
Confidence 9999999999999999 6999 999999999999999976 379999987
No 11
>cd01911 proteasome_alpha proteasome alpha subunit. The 20S proteasome, multisubunit proteolytic complex, is the central enzyme of nonlysosomal protein degradation in both the cytosol and nucleus. It is composed of 28 subunits arranged as four homoheptameric rings that stack on top of one another forming an elongated alpha-beta-beta-alpha cylinder with a central cavity. The proteasome alpha and beta subunits are members of the N-terminal nucleophile (Ntn)-hydrolase superfamily. Their N-terminal threonine residues are exposed as a nucleophile in peptide bond hydrolysis. Mammals have 7 different alpha and 10 different beta proteasome subunit genes while archaea have one of each.
Probab=100.00 E-value=1.7e-57 Score=373.13 Aligned_cols=205 Identities=56% Similarity=0.854 Sum_probs=197.5
Q ss_pred CCCCCeeeCCCCccchhhhHHHHHhcCCcEEEEEeCCEEEEEEeecccccccccCccccEEEecCcEEEEEeccHHHHHH
Q 027555 4 YDRAITVFSPDGHLFQVEYALEAVRKGNAAVGVRGTDTIVLGVEKKSTVKLQDSRSVRKIVSLDNHIALACAGLKADARV 83 (222)
Q Consensus 4 yd~~~~~fsp~G~l~q~eya~~a~~~G~t~igi~~~dgVvla~d~~~~~~l~~~~~~~Ki~~i~~~i~~~~sG~~~D~~~ 83 (222)
||+++|+|||||||+|+|||++++++|+|+|||+++||||||+|++.+.+++..++.+||++|+++++|++||..+|++.
T Consensus 1 ~~~~~~~f~~~G~~~q~eya~~~~~~G~tvigi~~~dgVvlaaD~~~~~~~~~~~~~~KI~~i~~~i~~~~sG~~~D~~~ 80 (209)
T cd01911 1 YDRSITTFSPEGRLFQVEYALEAVKNGSTAVGIKGKDGVVLAVEKKVTSKLLDPSSVEKIFKIDDHIGCAVAGLTADARV 80 (209)
T ss_pred CCCCCccCCCCCEEeHHHHHHHHHHcCCCEEEEEECCEEEEEEEecCCccccCCcccceEEEecCCeEEEeccCcHhHHH
Confidence 89999999999999999999999999999999999999999999999887766788999999999999999999999999
Q ss_pred HHHHHHHHHHHhhhhcCCCCCHHHHHHHHHHHHHhhcccCCCccceeeeEEEEEeCCCCccEEEEECCCCceecccEEEe
Q 027555 84 LINRARIECQSHRLTVEDPVTVEYITRYIAGLQQKYTQSGGVRPFGLSTLIVGFDPYTGVPSLYQTDPSGTFSAWKANAT 163 (222)
Q Consensus 84 l~~~~~~~~~~~~~~~~~~i~~~~la~~ls~~~~~~~~~~~~rP~~v~~ivaG~d~~~~gp~ly~iD~~G~~~~~~~~a~ 163 (222)
+.+.++.++..|++++|++++++.+|+++++.+|+|++++++||++|++||+|||+ ++||+||.+||.|++.+++++++
T Consensus 81 l~~~l~~~~~~~~~~~g~~~~~~~la~~ls~~~~~~~~~~~~rP~~v~~iv~G~d~-~~~~~Ly~iD~~G~~~~~~~~a~ 159 (209)
T cd01911 81 LVNRARVEAQNYRYTYGEPIPVEVLVKRIADLAQVYTQYGGVRPFGVSLLIAGYDE-EGGPQLYQTDPSGTYFGYKATAI 159 (209)
T ss_pred HHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHhcccCccChhheEEEEEEcC-CCCcEEEEECCCCCeeeeeEEEe
Confidence 99999999999999999999999999999999999999999999999999999997 56999999999999999999999
Q ss_pred cCChHHHHHHHHhhcCCCCh-HHHHHHHHHHHHHHhhcC--CCceEEEE
Q 027555 164 GRNSNSMREFLEKNYKETSG-QETIKLAIRALLEVCSFL--YFRMSLGM 209 (222)
Q Consensus 164 G~g~~~~~~~Le~~~~~~ls-~ea~~l~~~~l~~~~~~d--~~~~~v~~ 209 (222)
|+|+.+++++||+.|+|+|+ +||++++++||+.+.+|| .++++|++
T Consensus 160 G~g~~~~~~~L~~~~~~~ms~~ea~~l~~~~l~~~~~~d~~~~~~~i~i 208 (209)
T cd01911 160 GKGSQEAKTFLEKRYKKDLTLEEAIKLALKALKEVLEEDKKAKNIEIAV 208 (209)
T ss_pred CCCcHHHHHHHHHhcccCCCHHHHHHHHHHHHHHHHhccCCCCcEEEEE
Confidence 99999999999999999999 999999999999999998 56777775
No 12
>cd03753 proteasome_alpha_type_5 proteasome_alpha_type_5. The 20S proteasome, multisubunit proteolytic complex, is the central enzyme of nonlysosomal protein degradation in both the cytosol and nucleus. It is composed of 28 subunits arranged as four homoheptameric rings that stack on top of one another forming an elongated alpha-beta-beta-alpha cylinder with a central cavity. The proteasome alpha and beta subunits are members of the N-terminal nucleophile (Ntn)-hydrolase superfamily. Their N-terminal threonine residues are exposed as a nucleophile in peptide bond hydrolysis. Mammals have 7 alpha and 7 beta proteasome subunits while archaea have one of each.
Probab=100.00 E-value=5.1e-57 Score=371.32 Aligned_cols=205 Identities=42% Similarity=0.696 Sum_probs=195.0
Q ss_pred CCCCCeeeCCCCccchhhhHHHHHhcCCcEEEEEeCCEEEEEEeecccccccccCccccEEEecCcEEEEEeccHHHHHH
Q 027555 4 YDRAITVFSPDGHLFQVEYALEAVRKGNAAVGVRGTDTIVLGVEKKSTVKLQDSRSVRKIVSLDNHIALACAGLKADARV 83 (222)
Q Consensus 4 yd~~~~~fsp~G~l~q~eya~~a~~~G~t~igi~~~dgVvla~d~~~~~~l~~~~~~~Ki~~i~~~i~~~~sG~~~D~~~ 83 (222)
||+++|+|||||||+|+|||++++++|+|+|||+++||||||+|++.++++..+++.+||++|+++++|++||+.+|++.
T Consensus 1 ~~~~~~~f~p~G~~~Q~eya~~a~~~G~t~igik~~dgVvlaad~r~~~~~~~~~~~~KI~~I~~~i~~~~sG~~~D~~~ 80 (213)
T cd03753 1 YDRGVNTFSPEGRLFQVEYAIEAIKLGSTAIGIKTKEGVVLAVEKRITSPLMEPSSVEKIMEIDDHIGCAMSGLIADART 80 (213)
T ss_pred CCCCCccCCCCCeEhHHHHHHHHHhcCCCEEEEEeCCEEEEEEecccCCcCcCCCccceEEEEcCCEEEEEecCHHHHHH
Confidence 89999999999999999999999999999999999999999999999877777778999999999999999999999999
Q ss_pred HHHHHHHHHHHhhhhcCCCCCHHHHHHHHHHHHHhhcccC-----CCccceeeeEEEEEeCCCCccEEEEECCCCceecc
Q 027555 84 LINRARIECQSHRLTVEDPVTVEYITRYIAGLQQKYTQSG-----GVRPFGLSTLIVGFDPYTGVPSLYQTDPSGTFSAW 158 (222)
Q Consensus 84 l~~~~~~~~~~~~~~~~~~i~~~~la~~ls~~~~~~~~~~-----~~rP~~v~~ivaG~d~~~~gp~ly~iD~~G~~~~~ 158 (222)
+.+.++.+++.|+++++++++++.+++++++++|+|++.. +.|||+|++|||||| ++||+||.+||+|++.++
T Consensus 81 l~~~~r~~~~~~~~~~~~~i~~~~~~~~ls~~~~~~~~~~~~~~~~~rP~~v~~ii~G~D--~~gp~Ly~vd~~G~~~~~ 158 (213)
T cd03753 81 LIDHARVEAQNHRFTYNEPMTVESVTQAVSDLALQFGEGDDGKKAMSRPFGVALLIAGVD--ENGPQLFHTDPSGTFTRC 158 (213)
T ss_pred HHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHhCcccccccccccceEEEEEEEEc--CCCCEEEEECCCCCeecc
Confidence 9999999999999999999999999999999999998743 469999999999999 478999999999999999
Q ss_pred cEEEecCChHHHHHHHHhhcCCCCh-HHHHHHHHHHHHHHhhcC--CCceEEEEE
Q 027555 159 KANATGRNSNSMREFLEKNYKETSG-QETIKLAIRALLEVCSFL--YFRMSLGMV 210 (222)
Q Consensus 159 ~~~a~G~g~~~~~~~Le~~~~~~ls-~ea~~l~~~~l~~~~~~d--~~~~~v~~v 210 (222)
+++|+|++++.++++|+++|+++|+ +||++++++||+.+.+++ ..+++|.+|
T Consensus 159 ~~~a~G~~~~~~~~~L~~~~~~~ls~eeai~l~~~~l~~~~~~~~~~~~~ei~~~ 213 (213)
T cd03753 159 DAKAIGSGSEGAQSSLQEKYHKDMTLEEAEKLALSILKQVMEEKLNSTNVELATV 213 (213)
T ss_pred cEEEECCCcHHHHHHHHhhccCCCCHHHHHHHHHHHHHHHhcccCCCCcEEEEEC
Confidence 9999999999999999999999999 999999999999998876 578998864
No 13
>KOG0176 consensus 20S proteasome, regulatory subunit alpha type PSMA5/PUP2 [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=4.7e-57 Score=352.58 Aligned_cols=215 Identities=40% Similarity=0.649 Sum_probs=203.9
Q ss_pred CCCCCCCCeeeCCCCccchhhhHHHHHhcCCcEEEEEeCCEEEEEEeecccccccccCccccEEEecCcEEEEEeccHHH
Q 027555 1 MARYDRAITVFSPDGHLFQVEYALEAVRKGNAAVGVRGTDTIVLGVEKKSTVKLQDSRSVRKIVSLDNHIALACAGLKAD 80 (222)
Q Consensus 1 ~~~yd~~~~~fsp~G~l~q~eya~~a~~~G~t~igi~~~dgVvla~d~~~~~~l~~~~~~~Ki~~i~~~i~~~~sG~~~D 80 (222)
|+.||+.+++|||||||||+|||++|++.|+|.|||+.++|||||+++|.+++|+.+++.+||++|++||+|++||+.+|
T Consensus 5 rseydrgVNTfSpEGRlfQVEYaieAikLGsTaIGv~TkEgVvL~vEKritSpLm~p~sveKi~eid~HIgca~SGl~aD 84 (241)
T KOG0176|consen 5 RSEYDRGVNTFSPEGRLFQVEYAIEAIKLGSTAIGVKTKEGVVLAVEKRITSPLMEPSSVEKIVEIDDHIGCAMSGLIAD 84 (241)
T ss_pred HHHhcccccccCCCceeeehhhHHHHHhcCCceeeeeccceEEEEEeccccCcccCchhhhhheehhhceeeeccccccc
Confidence 57899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHhhhhcCCCCCHHHHHHHHHHHHHhhcccC-----CCccceeeeEEEEEeCCCCccEEEEECCCCce
Q 027555 81 ARVLINRARIECQSHRLTVEDPVTVEYITRYIAGLQQKYTQSG-----GVRPFGLSTLIVGFDPYTGVPSLYQTDPSGTF 155 (222)
Q Consensus 81 ~~~l~~~~~~~~~~~~~~~~~~i~~~~la~~ls~~~~~~~~~~-----~~rP~~v~~ivaG~d~~~~gp~ly~iD~~G~~ 155 (222)
++.++++.|.++++|++.||++++++.+.+.+|++..+|.... -.|||||++++||+| +.||+||+.||+|++
T Consensus 85 arTlve~arv~~qnh~f~Y~e~i~VEs~tq~v~~LaLrFGe~~~~~~~msRPFGValliAG~D--~~gpqL~h~dPSGtf 162 (241)
T KOG0176|consen 85 ARTLVERARVETQNHWFTYGEPISVESLTQAVSDLALRFGEGDDEEAIMSRPFGVALLIAGHD--ETGPQLYHLDPSGTF 162 (241)
T ss_pred hHHHHHHHHHHhhhceeecCCcccHHHHHHHHHHHHhHhCCCcchhhhhcCCcceEEEEeecc--CCCceEEEeCCCCce
Confidence 9999999999999999999999999999999999988886542 249999999999999 589999999999999
Q ss_pred ecccEEEecCChHHHHHHHHhhcCCCCh-HHHHHHHHHHHHHHhhcC--CCceEEEEEecCceEE
Q 027555 156 SAWKANATGRNSNSMREFLEKNYKETSG-QETIKLAIRALLEVCSFL--YFRMSLGMVITKYYEH 217 (222)
Q Consensus 156 ~~~~~~a~G~g~~~~~~~Le~~~~~~ls-~ea~~l~~~~l~~~~~~d--~~~~~v~~v~~~~~~~ 217 (222)
+.+++-|+|+|+.-+...|++.|+++|+ +||+.+++..|+.+++.+ ..|+++.+|..++--+
T Consensus 163 ~~~~AKAIGSgsEga~~~L~~e~~~~ltL~ea~~~~L~iLkqVMeeKl~~~Nvev~~vt~e~~f~ 227 (241)
T KOG0176|consen 163 IRYKAKAIGSGSEGAESSLQEEYHKDLTLKEAEKIVLKILKQVMEEKLNSNNVEVAVVTPEGEFH 227 (241)
T ss_pred EEecceeccccchHHHHHHHHHHhhcccHHHHHHHHHHHHHHHHHHhcCccceEEEEEcccCceE
Confidence 9999999999999999999999999999 999999999999999985 6799999888764433
No 14
>KOG0183 consensus 20S proteasome, regulatory subunit alpha type PSMA7/PRE6 [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=4.6e-57 Score=356.55 Aligned_cols=213 Identities=71% Similarity=1.077 Sum_probs=207.5
Q ss_pred CCCCCCCCeeeCCCCccchhhhHHHHHhcCCcEEEEEeCCEEEEEEeecccccccccCccccEEEecCcEEEEEeccHHH
Q 027555 1 MARYDRAITVFSPDGHLFQVEYALEAVRKGNAAVGVRGTDTIVLGVEKKSTVKLQDSRSVRKIVSLDNHIALACAGLKAD 80 (222)
Q Consensus 1 ~~~yd~~~~~fsp~G~l~q~eya~~a~~~G~t~igi~~~dgVvla~d~~~~~~l~~~~~~~Ki~~i~~~i~~~~sG~~~D 80 (222)
|++||+.+|+|||+|+|+|+|||++|+.+|+|+||++++|+|||+.+++...+|++.+...||..+++|++|+++|+.+|
T Consensus 1 msrydraltvFSPDGhL~QVEYAqEAvrkGstaVgvrg~~~vvlgvEkkSv~~Lq~~r~~rkI~~ld~hV~mafaGl~aD 80 (249)
T KOG0183|consen 1 MSRYDRALTVFSPDGHLFQVEYAQEAVRKGSTAVGVRGNNCVVLGVEKKSVPKLQDERTVRKISMLDDHVVMAFAGLTAD 80 (249)
T ss_pred CCccccceEEECCCCCEEeeHhHHHHHhcCceEEEeccCceEEEEEeecchhhhhhhhhhhhheeecceeeEEecCCCcc
Confidence 78999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHhhhhcCCCCCHHHHHHHHHHHHHhhcccCCCccceeeeEEEEEeCCCCccEEEEECCCCceecccE
Q 027555 81 ARVLINRARIECQSHRLTVEDPVTVEYITRYIAGLQQKYTQSGGVRPFGLSTLIVGFDPYTGVPSLYQTDPSGTFSAWKA 160 (222)
Q Consensus 81 ~~~l~~~~~~~~~~~~~~~~~~i~~~~la~~ls~~~~~~~~~~~~rP~~v~~ivaG~d~~~~gp~ly~iD~~G~~~~~~~ 160 (222)
++.+++.+|.+|+.|+++.+.|+++++++++++.+.|.|||+.+.||||++.+|+|+|+ ++.|+||++||+|.+.+|++
T Consensus 81 ArilinrArvecqShrlt~edpvtveyitRyiA~~kQrYTqs~grRPFGvs~Li~GfD~-~g~p~lyqtePsG~f~ewka 159 (249)
T KOG0183|consen 81 ARILINRARVECQSHRLTLEDPVTVEYITRYIAGLKQRYTQSNGRRPFGVSTLIGGFDP-DGTPRLYQTEPSGIFSEWKA 159 (249)
T ss_pred ceeehhhHhHhhhhhhcccCCCcHHHHHHHHHHHhhhhhhccCCcccccceEEEEeeCC-CCCeeeEeeCCCcchhhhhc
Confidence 99999999999999999999999999999999999999999999999999999999999 77899999999999999999
Q ss_pred EEecCChHHHHHHHHhhcCCC--Ch-HHHHHHHHHHHHHHhhcCCCceEEEEEecCc
Q 027555 161 NATGRNSNSMREFLEKNYKET--SG-QETIKLAIRALLEVCSFLYFRMSLGMVITKY 214 (222)
Q Consensus 161 ~a~G~g~~~~~~~Le~~~~~~--ls-~ea~~l~~~~l~~~~~~d~~~~~v~~v~~~~ 214 (222)
-|+|.++..+..+|||+|.+. .+ .++++|++++|.++...+..|+++.|.+..+
T Consensus 160 ~aiGr~sk~VrEflEK~y~e~~~~~~~~~ikL~ir~LleVvqs~~~nie~aVm~~~~ 216 (249)
T KOG0183|consen 160 NAIGRSSKTVREFLEKNYKEEAIATEGETIKLAIRALLEVVQSGGKNIEVAVMKRRK 216 (249)
T ss_pred cccccccHHHHHHHHHhcccccccccccHHHHHHHHHHHHhhcCCCeeEEEEEecCC
Confidence 999999999999999999987 66 9999999999999999999999999888665
No 15
>COG0638 PRE1 20S proteasome, alpha and beta subunits [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=2.5e-55 Score=365.84 Aligned_cols=212 Identities=45% Similarity=0.731 Sum_probs=200.9
Q ss_pred CCCCCCCeeeCCCCccchhhhHHHHHhcC-CcEEEEEeCCEEEEEEeeccccc-ccccCccccEEEecCcEEEEEeccHH
Q 027555 2 ARYDRAITVFSPDGHLFQVEYALEAVRKG-NAAVGVRGTDTIVLGVEKKSTVK-LQDSRSVRKIVSLDNHIALACAGLKA 79 (222)
Q Consensus 2 ~~yd~~~~~fsp~G~l~q~eya~~a~~~G-~t~igi~~~dgVvla~d~~~~~~-l~~~~~~~Ki~~i~~~i~~~~sG~~~ 79 (222)
++||+.+++|||||+++|+|||.+++.+| +|+|||+++||||||+|+|.+++ ++..++.+|||+|+|||+|++||+.+
T Consensus 1 ~~~~~~~~~fsp~g~l~q~e~a~~a~~~~gtT~vgik~~dgVVlaadkr~t~~~~~~~~~~~Ki~~I~d~i~~~~sG~~a 80 (236)
T COG0638 1 AGYDRAITIFSPEGRLFQVEYALEAVKRGGTTTVGIKGKDGVVLAADKRATSGLLIASSNVEKIFKIDDHIGMAIAGLAA 80 (236)
T ss_pred CCCcCcceeECCCCchHHHHHHHHHHHcCCceEEEEEecCEEEEEEeccCCCCceecccccceEEEecCCEEEEeccCcH
Confidence 47999999999999999999999999875 99999999999999999999996 55667799999999999999999999
Q ss_pred HHHHHHHHHHHHHHHhhhhcCCCCCHHHHHHHHHHHHHhhcccCCCccceeeeEEEEEeCCCCccEEEEECCCCceeccc
Q 027555 80 DARVLINRARIECQSHRLTVEDPVTVEYITRYIAGLQQKYTQSGGVRPFGLSTLIVGFDPYTGVPSLYQTDPSGTFSAWK 159 (222)
Q Consensus 80 D~~~l~~~~~~~~~~~~~~~~~~i~~~~la~~ls~~~~~~~~~~~~rP~~v~~ivaG~d~~~~gp~ly~iD~~G~~~~~~ 159 (222)
|++.++++++.+++.|++.++++|+++.+|+.+++++|.++++ .|||+|++||||+|+ ++|+||++||+|++.+++
T Consensus 81 Da~~lv~~~r~~a~~~~~~~~~~i~v~~la~~ls~~l~~~~~~--~rP~gv~~iiaG~d~--~~p~Ly~~Dp~G~~~~~~ 156 (236)
T COG0638 81 DAQVLVRYARAEAQLYRLRYGEPISVEALAKLLSNILQEYTQS--GRPYGVSLLVAGVDD--GGPRLYSTDPSGSYNEYK 156 (236)
T ss_pred hHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHhccC--cccceEEEEEEEEcC--CCCeEEEECCCCceeecC
Confidence 9999999999999999999999999999999999999999987 899999999999994 789999999999999999
Q ss_pred EEEecCChHHHHHHHHhhcCCCCh-HHHHHHHHHHHHHHhhcC---CCceEEEEEec-CceEE
Q 027555 160 ANATGRNSNSMREFLEKNYKETSG-QETIKLAIRALLEVCSFL---YFRMSLGMVIT-KYYEH 217 (222)
Q Consensus 160 ~~a~G~g~~~~~~~Le~~~~~~ls-~ea~~l~~~~l~~~~~~d---~~~~~v~~v~~-~~~~~ 217 (222)
++|+|+|++.++++||++|+++|+ +||++++++||+.+++|| ..+++|.++++ +++++
T Consensus 157 ~~a~Gsgs~~a~~~Le~~y~~~m~~eeai~la~~al~~a~~rd~~s~~~~~v~vi~~~~~~~~ 219 (236)
T COG0638 157 ATAIGSGSQFAYGFLEKEYREDLSLEEAIELAVKALRAAIERDAASGGGIEVAVITKDEGFRK 219 (236)
T ss_pred EEEEcCCcHHHHHHHHhhccCCCCHHHHHHHHHHHHHHHHhccccCCCCeEEEEEEcCCCeEE
Confidence 999999999999999999999999 999999999999999998 46779998887 66665
No 16
>KOG0181 consensus 20S proteasome, regulatory subunit alpha type PSMA2/PRE8 [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=3.6e-54 Score=335.73 Aligned_cols=215 Identities=39% Similarity=0.636 Sum_probs=209.0
Q ss_pred CCCCCCeeeCCCCccchhhhHHHHHhcCCcEEEEEeCCEEEEEEeecccccccccCccccEEEecCcEEEEEeccHHHHH
Q 027555 3 RYDRAITVFSPDGHLFQVEYALEAVRKGNAAVGVRGTDTIVLGVEKKSTVKLQDSRSVRKIVSLDNHIALACAGLKADAR 82 (222)
Q Consensus 3 ~yd~~~~~fsp~G~l~q~eya~~a~~~G~t~igi~~~dgVvla~d~~~~~~l~~~~~~~Ki~~i~~~i~~~~sG~~~D~~ 82 (222)
+|..++|+|||+|+|-|+|||+.|+.+|.+.|||+-.||||||++++..+.|.+..+.+|+++|.++|+|.+||..+|++
T Consensus 5 ~y~fslTtFSpsGKL~QieyAL~Av~~G~~SvGi~A~nGvVlatekk~~s~L~~~~sv~KV~~i~~~IG~vYSGmgpD~R 84 (233)
T KOG0181|consen 5 GYSFSLTTFSPSGKLVQIEYALTAVVNGQTSVGIKAANGVVLATEKKDVSPLVDEESVRKVEKITPHIGCVYSGMGPDYR 84 (233)
T ss_pred ccceeeEEEcCCCceehHHHHHHHHhCCCCceeeeecCceEEEeccCCCCccchhhhhhhHhhccCCcceEEecCCCcee
Confidence 79999999999999999999999999999999999999999999999999898888999999999999999999999999
Q ss_pred HHHHHHHHHHHHhhhhcCCCCCHHHHHHHHHHHHHhhcccCCCccceeeeEEEEEeCCCCccEEEEECCCCceecccEEE
Q 027555 83 VLINRARIECQSHRLTVEDPVTVEYITRYIAGLQQKYTQSGGVRPFGLSTLIVGFDPYTGVPSLYQTDPSGTFSAWKANA 162 (222)
Q Consensus 83 ~l~~~~~~~~~~~~~~~~~~i~~~~la~~ls~~~~~~~~~~~~rP~~v~~ivaG~d~~~~gp~ly~iD~~G~~~~~~~~a 162 (222)
.+++..|..++.|...|+++|++..|...++..+|+|||+++.||||+++++|||| +++|.||++||+|+++.|+++|
T Consensus 85 vlV~~~rkiAe~Yy~vY~e~~pt~qlv~~~asvmQEyTqsgGvrPFGvslliaG~~--~~~p~LyQvdPSGsyf~wkatA 162 (233)
T KOG0181|consen 85 VLVHKSRKIAEQYYRVYGEPIPTTQLVQEVASVMQEYTQSGGVRPFGVSLLIAGWD--EGGPLLYQVDPSGSYFAWKATA 162 (233)
T ss_pred ehhhHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhhcCCccccceEEEEeecC--CCceeEEEECCccceeehhhhh
Confidence 99999999999999999999999999999999999999999999999999999999 5899999999999999999999
Q ss_pred ecCChHHHHHHHHhhcCCCCh-HHHHHHHHHHHHHHhhcC--CCceEEEEEecCceEEee
Q 027555 163 TGRNSNSMREFLEKNYKETSG-QETIKLAIRALLEVCSFL--YFRMSLGMVITKYYEHLY 219 (222)
Q Consensus 163 ~G~g~~~~~~~Le~~~~~~ls-~ea~~l~~~~l~~~~~~d--~~~~~v~~v~~~~~~~~~ 219 (222)
+|.+...++++||++|+++|. +++++.|+.+|++..+.. .+|++|+++..++++++.
T Consensus 163 ~Gkn~v~aktFlEkR~~edleldd~ihtailtlkE~fege~~~~nieigv~~~~~F~~lt 222 (233)
T KOG0181|consen 163 MGKNYVNAKTFLEKRYNEDLELDDAIHTAILTLKESFEGEMTAKNIEIGVCGENGFRRLT 222 (233)
T ss_pred hccCcchHHHHHHHHhccccccchHHHHHHHHHHHHhccccccCceEEEEecCCceeecC
Confidence 999999999999999999999 999999999999999985 789999999999998854
No 17
>KOG0184 consensus 20S proteasome, regulatory subunit alpha type PSMA3/PRE10 [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=7.2e-53 Score=334.32 Aligned_cols=211 Identities=36% Similarity=0.541 Sum_probs=203.6
Q ss_pred CCCCCCeeeCCCCccchhhhHHHHHhcCCcEEEEEeCCEEEEEEeecccccccccCccccEEEecCcEEEEEeccHHHHH
Q 027555 3 RYDRAITVFSPDGHLFQVEYALEAVRKGNAAVGVRGTDTIVLGVEKKSTVKLQDSRSVRKIVSLDNHIALACAGLKADAR 82 (222)
Q Consensus 3 ~yd~~~~~fsp~G~l~q~eya~~a~~~G~t~igi~~~dgVvla~d~~~~~~l~~~~~~~Ki~~i~~~i~~~~sG~~~D~~ 82 (222)
+||...++|||+||++|+|||+||+.+|+|+|||||+||||+++|+..+++|..+...+|||.|++||+|+++|+.+|.+
T Consensus 7 GyDls~s~fSpdGrvfQveYA~KAven~~T~IGIk~kdGVVl~vEKli~SkLy~p~sn~ri~~V~r~iG~avaGl~~Dg~ 86 (254)
T KOG0184|consen 7 GYDLSASTFSPDGRVFQVEYAQKAVENSGTCIGIKCKDGVVLAVEKLITSKLYEPGSNERIFSVDRHIGMAVAGLIPDGR 86 (254)
T ss_pred cccccceeeCCCCceehHHHHHHHHhcCCcEEEEecCCeEEEEEeeeecccccccCCCCceEeecccccEEEeccccchH
Confidence 69999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhhhhcCCCCCHHHHHHHHHHHHHhhcccCCCccceeeeEEEEEeCCCCccEEEEECCCCceecccEEE
Q 027555 83 VLINRARIECQSHRLTVEDPVTVEYITRYIAGLQQKYTQSGGVRPFGLSTLIVGFDPYTGVPSLYQTDPSGTFSAWKANA 162 (222)
Q Consensus 83 ~l~~~~~~~~~~~~~~~~~~i~~~~la~~ls~~~~~~~~~~~~rP~~v~~ivaG~d~~~~gp~ly~iD~~G~~~~~~~~a 162 (222)
.+.+.+|.++.+|+.+++.++|.+.+|..++.++|.||.++..|||||+.++++|| ++||+||.++|+|..+.++.+|
T Consensus 87 ~l~~~ar~ea~~~~~~y~~piP~~~la~rva~yvh~~Tly~~vRpfG~~~~~~~yd--~~g~~LymiepSG~~~~Y~~aa 164 (254)
T KOG0184|consen 87 HLVNRARDEAASWRKNYGDPIPGKHLADRVADYVHAFTLYSSVRPFGASTILGSYD--DEGPQLYMIEPSGSSYGYKGAA 164 (254)
T ss_pred HHHHHHHHHHHHHHHhcCCCCchHHHHHHHHhhhheeehhhccccccceEEEEEEe--CCCceEEEEcCCCCccceeeee
Confidence 99999999999999999999999999999999999999999999999999999999 6899999999999999999999
Q ss_pred ecCChHHHHHHHHhhcCCCCh-HHHHHHHHHHHHHHhhcC---CCceEEEEEe--cCce
Q 027555 163 TGRNSNSMREFLEKNYKETSG-QETIKLAIRALLEVCSFL---YFRMSLGMVI--TKYY 215 (222)
Q Consensus 163 ~G~g~~~~~~~Le~~~~~~ls-~ea~~l~~~~l~~~~~~d---~~~~~v~~v~--~~~~ 215 (222)
+|.|.+.+++.|||+--.+|+ +|+++.+.+.++.+.+.. .+.+|++||. |+|.
T Consensus 165 iGKgrq~aKtElEKL~~~~mt~~e~VkeaakIiY~~HDe~KdK~feiEm~wvg~eTnG~ 223 (254)
T KOG0184|consen 165 IGKGRQAAKTELEKLKIDEMTCKELVKEAAKIIYKVHDENKDKEFEIEMGWVGEETNGL 223 (254)
T ss_pred ccchhHHHHHHHHhcccccccHHHHHHHHHheeEeecccccCcceEEEEEEEEeecCCc
Confidence 999999999999999888999 999999999999999862 7899999998 5553
No 18
>KOG0182 consensus 20S proteasome, regulatory subunit alpha type PSMA6/SCL1 [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=4.5e-51 Score=322.06 Aligned_cols=216 Identities=36% Similarity=0.573 Sum_probs=207.2
Q ss_pred CCCCCCCCeeeCCCCccchhhhHHHHHhc-CCcEEEEEeCCEEEEEEeecccccccccCccccEEEecCcEEEEEeccHH
Q 027555 1 MARYDRAITVFSPDGHLFQVEYALEAVRK-GNAAVGVRGTDTIVLGVEKKSTVKLQDSRSVRKIVSLDNHIALACAGLKA 79 (222)
Q Consensus 1 ~~~yd~~~~~fsp~G~l~q~eya~~a~~~-G~t~igi~~~dgVvla~d~~~~~~l~~~~~~~Ki~~i~~~i~~~~sG~~~ 79 (222)
|.+||+++|+|||||||+|||||+||+++ |-|.||++++|++|+++.++.+.+|++++....+|+|+.+|+|+.+|..+
T Consensus 6 ~agfDrhitIFspeGrLyQVEYafkAin~~gltsVavrgkDcavvvsqKkvpDKLld~~tvt~~f~itk~ig~v~tG~~a 85 (246)
T KOG0182|consen 6 SAGFDRHITIFSPEGRLYQVEYAFKAINQAGLTSVAVRGKDCAVVVTQKKVPDKLLDSSTVTHLFRITKKIGCVITGMIA 85 (246)
T ss_pred cCCccceEEEECCCceEEeeehHHHHhhcCCCceEEEcCCceEEEEecccCcccccccccceeEEEeeccceEEEecCCc
Confidence 56899999999999999999999999988 77999999999999999999999999998899999999999999999999
Q ss_pred HHHHHHHHHHHHHHHhhhhcCCCCCHHHHHHHHHHHHHhhcccCCCccceeeeEEEEEeCCCCccEEEEECCCCceeccc
Q 027555 80 DARVLINRARIECQSHRLTVEDPVTVEYITRYIAGLQQKYTQSGGVRPFGLSTLIVGFDPYTGVPSLYQTDPSGTFSAWK 159 (222)
Q Consensus 80 D~~~l~~~~~~~~~~~~~~~~~~i~~~~la~~ls~~~~~~~~~~~~rP~~v~~ivaG~d~~~~gp~ly~iD~~G~~~~~~ 159 (222)
|.+..+.++|.++.++++.+|.+||++.||++++++.|.|||+..+||+||++++.|+|+ +.||.+|.+||.|-+..++
T Consensus 86 Dar~~v~rar~eAa~~~yk~Gyemp~DiL~k~~Ad~~QvytQ~a~mRplg~~~~~i~~D~-E~gP~vYk~DpAGyy~g~k 164 (246)
T KOG0182|consen 86 DARSQVQRARYEAAEFRYKYGYEMPCDILAKRMADKSQVYTQNAAMRPLGVAATLIGVDE-ERGPSVYKTDPAGYYYGFK 164 (246)
T ss_pred chHHHHHHHHHHHHhhhhhcCCCCCHHHHHHHHhhHHHHHhhhhhhcccceeEEEEEecc-ccCcceEeecCccccccce
Confidence 999999999999999999999999999999999999999999999999999999999998 8899999999999999999
Q ss_pred EEEecCChHHHHHHHHhhcCCC--Ch-HHHHHHHHHHHHHHhhcC--CCceEEEEEecCceEE
Q 027555 160 ANATGRNSNSMREFLEKNYKET--SG-QETIKLAIRALLEVCSFL--YFRMSLGMVITKYYEH 217 (222)
Q Consensus 160 ~~a~G~g~~~~~~~Le~~~~~~--ls-~ea~~l~~~~l~~~~~~d--~~~~~v~~v~~~~~~~ 217 (222)
+++.|-....+..+|||+|+++ ++ +|++++++.||.+++..| ...+||++|..+.-+.
T Consensus 165 AtaaG~Kq~e~tsfLEKk~Kk~~~~t~~e~ve~ai~al~~sl~~Dfk~se~EVgvv~~~~p~f 227 (246)
T KOG0182|consen 165 ATAAGVKQQEATSFLEKKYKKDIDLTFEETVETAISALQSSLGIDFKSSELEVGVVTVDNPEF 227 (246)
T ss_pred eeecccchhhHHHHHHHhhccCccchHHHHHHHHHHHHHHHHhcccCCcceEEEEEEcCCcce
Confidence 9999999999999999999987 67 999999999999999988 5799999999776433
No 19
>KOG0178 consensus 20S proteasome, regulatory subunit alpha type PSMA4/PRE9 [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=6.6e-50 Score=315.24 Aligned_cols=212 Identities=38% Similarity=0.623 Sum_probs=200.9
Q ss_pred CCCCCCCeeeCCCCccchhhhHHHHHhcCCcEEEEEeCCEEEEEEeecccccccc-cCccccEEEecCcEEEEEeccHHH
Q 027555 2 ARYDRAITVFSPDGHLFQVEYALEAVRKGNAAVGVRGTDTIVLGVEKKSTVKLQD-SRSVRKIVSLDNHIALACAGLKAD 80 (222)
Q Consensus 2 ~~yd~~~~~fsp~G~l~q~eya~~a~~~G~t~igi~~~dgVvla~d~~~~~~l~~-~~~~~Ki~~i~~~i~~~~sG~~~D 80 (222)
++||.-.|+|||||||+|||||++++.+.+|+|||-.+||||||++++.++++.+ +...+||++|+|||+|+.+|+.+|
T Consensus 3 r~ydsrttiFspEGRLyQVEyAmeais~aGt~iGila~DGvvLa~e~k~t~kll~t~~~~EKiY~l~d~iaC~vaGlt~D 82 (249)
T KOG0178|consen 3 RRYDSRTTIFSPEGRLYQVEYAMEAISHAGTCIGILASDGVVLAGENKVTSKLLDTSIPMEKIYKLNDNIACAVAGLTSD 82 (249)
T ss_pred cCcCCcccccCCCcchHHHHHHHHHHhhhcceeEEEecCceEEEeecccchhhhhccccHHHhhhcCCceEEEEeccccc
Confidence 4689999999999999999999999999999999999999999999999998654 667999999999999999999999
Q ss_pred HHHHHHHHHHHHHHhhhhcCCCCCHHHHHHHHHHHHHhhcccCCCccceeeeEEEEEeCCCCccEEEEECCCCceecccE
Q 027555 81 ARVLINRARIECQSHRLTVEDPVTVEYITRYIAGLQQKYTQSGGVRPFGLSTLIVGFDPYTGVPSLYQTDPSGTFSAWKA 160 (222)
Q Consensus 81 ~~~l~~~~~~~~~~~~~~~~~~i~~~~la~~ls~~~~~~~~~~~~rP~~v~~ivaG~d~~~~gp~ly~iD~~G~~~~~~~ 160 (222)
+..|++.+|..++.|.+++|+++|+++|.+.++++.|.|||+++.|||||+++-+|||. ..|.+||+.||+|++-.|++
T Consensus 83 AnvL~n~aRi~AQ~yl~~y~e~iP~eqLv~~lcdiKQayTQygG~RPFGVSfLYaGwd~-~~gyqLy~SdPSGny~gWka 161 (249)
T KOG0178|consen 83 ANVLKNYARIIAQRYLFRYGEEIPCEQLVTFLCDIKQAYTQYGGKRPFGVSFLYAGWDD-RYGYQLYQSDPSGNYGGWKA 161 (249)
T ss_pred HHHHHHHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHHHHhhccCcCCCceeeeeeceec-CcceEEEecCCCCCccccce
Confidence 99999999999999999999999999999999999999999999999999999999997 78899999999999999999
Q ss_pred EEecCChHHHHHHHHhhcCCCCh--HHHHHHHHHHHHHHhhcC---CCceEEEEEecCc
Q 027555 161 NATGRNSNSMREFLEKNYKETSG--QETIKLAIRALLEVCSFL---YFRMSLGMVITKY 214 (222)
Q Consensus 161 ~a~G~g~~~~~~~Le~~~~~~ls--~ea~~l~~~~l~~~~~~d---~~~~~v~~v~~~~ 214 (222)
.++|.++..+..+|.+.|+++.. +||..+|++.|..+++.. ..++|+..+....
T Consensus 162 ~ciG~N~~Aa~s~Lkqdykdd~~~~~eA~~laikvL~kt~d~~~lt~eklEia~~~k~~ 220 (249)
T KOG0178|consen 162 TCIGANSGAAQSMLKQDYKDDENDLEEAKALAIKVLSKTLDSGSLTAEKLEIATITKDC 220 (249)
T ss_pred eeeccchHHHHHHHHhhhccccccHHHHHHHHHHHHHhhcccCCCChhheEEEEEEecC
Confidence 99999999999999999998755 999999999999999985 5799998877443
No 20
>KOG0863 consensus 20S proteasome, regulatory subunit alpha type PSMA1/PRE5 [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=7.1e-47 Score=301.66 Aligned_cols=208 Identities=38% Similarity=0.556 Sum_probs=196.9
Q ss_pred CCCCCCeeeCCCCccchhhhHHHHHhcCCcEEEEEeCCEEEEEEeecccccccccCccccEEEecCcEEEEEeccHHHHH
Q 027555 3 RYDRAITVFSPDGHLFQVEYALEAVRKGNAAVGVRGTDTIVLGVEKKSTVKLQDSRSVRKIVSLDNHIALACAGLKADAR 82 (222)
Q Consensus 3 ~yd~~~~~fsp~G~l~q~eya~~a~~~G~t~igi~~~dgVvla~d~~~~~~l~~~~~~~Ki~~i~~~i~~~~sG~~~D~~ 82 (222)
.||...|+|||+|||+|+|||++|++.|+++||+|.++-+||++-++..+.+. +.++|||+|++|++++++|+.+|++
T Consensus 5 qyd~d~t~wsPqGrl~QvEya~EavkqGsatVGLks~thaVLvAl~r~~seLs--s~QkKi~~iD~h~g~siAGLt~Dar 82 (264)
T KOG0863|consen 5 QYDNDVTTWSPQGRLHQVEYAMEAVKQGSATVGLKSRTHAVLVALKRAQSELS--SHQKKIFKIDDHIGISIAGLTADAR 82 (264)
T ss_pred cccCceeEECCcceehHHHHHHHHHhcccceEeecccceEEEeeeccchhHHH--HhhheeEecccccceEEeccCcchH
Confidence 69999999999999999999999999999999999999999999988877653 3689999999999999999999999
Q ss_pred HHHHHHHHHHHHhhhhcCCCCCHHHHHHHHHHHHHhhcccCCCccceeeeEEEEEeCCCCccEEEEECCCCceecccEEE
Q 027555 83 VLINRARIECQSHRLTVEDPVTVEYITRYIAGLQQKYTQSGGVRPFGLSTLIVGFDPYTGVPSLYQTDPSGTFSAWKANA 162 (222)
Q Consensus 83 ~l~~~~~~~~~~~~~~~~~~i~~~~la~~ls~~~~~~~~~~~~rP~~v~~ivaG~d~~~~gp~ly~iD~~G~~~~~~~~a 162 (222)
.|.++++.+|..+++.+++++++.-|...|.+.+|..||+.+.|||||.++++|+| +.||+||.++|+|.+.+++..+
T Consensus 83 vl~~Ylr~ec~~~~~~~~r~~pv~rl~~~l~~k~q~~Tq~ygrRpYGVGllv~gYD--e~G~hl~e~~Psg~v~e~~g~s 160 (264)
T KOG0863|consen 83 VLSRYLRQECLNSRFIYGRPLPVLRLVEDLGDKAQENTQRYGRRPYGVGLLVAGYD--ESGPHLYEFCPSGNVFECKGMS 160 (264)
T ss_pred HHHHHHHHHHhhhhhccCCcccHHHHHHHHHHHHhhhhhhhCCccccceEEEEeec--CCCceeEEEcCCccEEEEeeee
Confidence 99999999999999999999999999999999999999999999999999999999 5899999999999999999999
Q ss_pred ecCChHHHHHHHHhhcC--CCCh-HHHHHHHHHHHHHHhhcC----CCceEEEEEecCc
Q 027555 163 TGRNSNSMREFLEKNYK--ETSG-QETIKLAIRALLEVCSFL----YFRMSLGMVITKY 214 (222)
Q Consensus 163 ~G~g~~~~~~~Le~~~~--~~ls-~ea~~l~~~~l~~~~~~d----~~~~~v~~v~~~~ 214 (222)
+|+.++.+.++||++.. ++++ +|.+..++.||+.+...| ..|++|+||.++.
T Consensus 161 IGsRSQsARTyLEr~~e~f~~~~~eELI~~gi~Alr~tlp~de~lt~~nvsI~Ivgkd~ 219 (264)
T KOG0863|consen 161 IGSRSQSARTYLERNLEEFEDSSPEELIKHGIMALRETLPEDEDLTGENVSIAIVGKDE 219 (264)
T ss_pred cccchhhHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhhcCcccccccceeEEEEEeCCC
Confidence 99999999999999776 4788 999999999999999965 6799999888664
No 21
>cd03759 proteasome_beta_type_3 proteasome beta type-3 subunit. The 20S proteasome, multisubunit proteolytic complex, is the central enzyme of nonlysosomal protein degradation in both the cytosol and nucleus. It is composed of 28 subunits arranged as four homoheptameric rings that stack on top of one another forming an elongated alpha-beta-beta-alpha cylinder with a central cavity. The proteasome alpha and beta subunits are members of the N-terminal nucleophile (Ntn)-hydrolase superfamily. Their N-terminal threonine residues are exposed as a nucleophile in peptide bond hydrolysis. Mammals have 7 alpha and 7 beta proteasome subunits while archaea have one of each.
Probab=100.00 E-value=4.1e-46 Score=302.61 Aligned_cols=187 Identities=19% Similarity=0.287 Sum_probs=174.6
Q ss_pred cCCcEEEEEeCCEEEEEEeecccccccc-cCccccEEEecCcEEEEEeccHHHHHHHHHHHHHHHHHhhhhcCCCCCHHH
Q 027555 29 KGNAAVGVRGTDTIVLGVEKKSTVKLQD-SRSVRKIVSLDNHIALACAGLKADARVLINRARIECQSHRLTVEDPVTVEY 107 (222)
Q Consensus 29 ~G~t~igi~~~dgVvla~d~~~~~~l~~-~~~~~Ki~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~i~~~~ 107 (222)
+|+|+|||+++||||||+|++.+++++. +++.+|||+|++|++|++||+.+|++.+.+.+|.+++.|+++++++|+++.
T Consensus 2 ~G~t~igik~~dgVvlaad~~~~~~~~~~~~~~~KI~~I~~~i~~~~sG~~~D~~~l~~~~r~~~~~~~~~~~~~~~~~~ 81 (195)
T cd03759 2 NGGAVVAMAGKDCVAIASDLRLGVQQQTVSTDFQKVFRIGDRLYIGLAGLATDVQTLAQKLRFRVNLYRLREEREIKPKT 81 (195)
T ss_pred CCceEEEEEcCCEEEEEEccccccCCEeEecCCCeEEEeCCCEEEEccchHHHHHHHHHHHHHHHHHHHHHhCCCCCHHH
Confidence 6999999999999999999999887654 557899999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhhcccCCCccceeeeEEEEEeCCCCccEEEEECCCCceeccc-EEEecCChHHHHHHHHhhcCCCCh-HH
Q 027555 108 ITRYIAGLQQKYTQSGGVRPFGLSTLIVGFDPYTGVPSLYQTDPSGTFSAWK-ANATGRNSNSMREFLEKNYKETSG-QE 185 (222)
Q Consensus 108 la~~ls~~~~~~~~~~~~rP~~v~~ivaG~d~~~~gp~ly~iD~~G~~~~~~-~~a~G~g~~~~~~~Le~~~~~~ls-~e 185 (222)
+|++|+++++. + +.|||+|++||||||+ +++|+||.+||+|++..++ ++|+|+|++.++++||+.|+|+|+ +|
T Consensus 82 la~~l~~~ly~--~--r~~P~~v~~ii~G~D~-~~~p~Ly~~D~~G~~~~~~~~~a~G~g~~~~~~~Le~~~~~~~s~~e 156 (195)
T cd03759 82 FSSLISSLLYE--K--RFGPYFVEPVVAGLDP-DGKPFICTMDLIGCPSIPSDFVVSGTASEQLYGMCESLWRPDMEPDE 156 (195)
T ss_pred HHHHHHHHHHH--h--cCCCceEEEEEEEEcC-CCCEEEEEEcCCCcccccCCEEEEcccHHHHHHHHHhccCCCCCHHH
Confidence 99999999854 3 3589999999999997 6789999999999998876 999999999999999999999999 99
Q ss_pred HHHHHHHHHHHHhhcC---CCceEEEEEecCceEEeee
Q 027555 186 TIKLAIRALLEVCSFL---YFRMSLGMVITKYYEHLYY 220 (222)
Q Consensus 186 a~~l~~~~l~~~~~~d---~~~~~v~~v~~~~~~~~~~ 220 (222)
|++++++||+.+.+|| ..+++|.+|+++|++++-|
T Consensus 157 a~~l~~~~l~~~~~rd~~~~~~~~i~ii~~~g~~~~~~ 194 (195)
T cd03759 157 LFETISQALLSAVDRDALSGWGAVVYIITKDKVTTRTL 194 (195)
T ss_pred HHHHHHHHHHHHHhhCcccCCceEEEEEcCCcEEEEec
Confidence 9999999999999997 6899999999999988654
No 22
>cd03758 proteasome_beta_type_2 proteasome beta type-2 subunit. The 20S proteasome, multisubunit proteolytic complex, is the central enzyme of nonlysosomal protein degradation in both the cytosol and nucleus. It is composed of 28 subunits arranged as four homoheptameric rings that stack on top of one another forming an elongated alpha-beta-beta-alpha cylinder with a central cavity. The proteasome alpha and beta subunits are members of the N-terminal nucleophile (Ntn)-hydrolase superfamily. Their N-terminal threonine residues are exposed as a nucleophile in peptide bond hydrolysis.Mammals have 7 alpha and 7 beta proteasome subunits while archaea have one of each.
Probab=100.00 E-value=3.4e-46 Score=302.62 Aligned_cols=185 Identities=19% Similarity=0.286 Sum_probs=175.8
Q ss_pred CcEEEEEeCCEEEEEEeecccc-cccccCccccEEEecCcEEEEEeccHHHHHHHHHHHHHHHHHhhhhcCCCCCHHHHH
Q 027555 31 NAAVGVRGTDTIVLGVEKKSTV-KLQDSRSVRKIVSLDNHIALACAGLKADARVLINRARIECQSHRLTVEDPVTVEYIT 109 (222)
Q Consensus 31 ~t~igi~~~dgVvla~d~~~~~-~l~~~~~~~Ki~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~i~~~~la 109 (222)
+|+|||+++||||||+|+|.+. .++.+++.+|||+|+++++|++||..+|++.+.++++.++..|+++++++++++.++
T Consensus 2 ~t~igi~~~dgVvlaad~r~~~~~~~~~~~~~KI~~I~~~i~~~~sG~~aD~~~l~~~~~~~~~~~~~~~~~~i~~~~la 81 (193)
T cd03758 2 ETLIGIKGKDFVILAADTSAARSILVLKDDEDKIYKLSDHKLMACSGEAGDRLQFAEYIQKNIQLYKMRNGYELSPKAAA 81 (193)
T ss_pred ceEEEEEeCCEEEEEEcCccccCcEEEecCcccEEEeCCCeEEEEccchHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHH
Confidence 6899999999999999999987 467788999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhhcccCCCccceeeeEEEEEeCCCCccEEEEECCCCceecccEEEecCChHHHHHHHHhhcCCCCh-HHHHH
Q 027555 110 RYIAGLQQKYTQSGGVRPFGLSTLIVGFDPYTGVPSLYQTDPSGTFSAWKANATGRNSNSMREFLEKNYKETSG-QETIK 188 (222)
Q Consensus 110 ~~ls~~~~~~~~~~~~rP~~v~~ivaG~d~~~~gp~ly~iD~~G~~~~~~~~a~G~g~~~~~~~Le~~~~~~ls-~ea~~ 188 (222)
+++++++|.+++.. |||+|++||+|||+ ++||+||.+||+|++.+++++|+|+|+++++++||++|+|+|| +||++
T Consensus 82 ~~l~~~~~~~~~~~--rP~~~~~li~G~d~-~~~p~Ly~~d~~G~~~~~~~~a~G~gs~~~~~~Le~~~~~~ms~eeai~ 158 (193)
T cd03758 82 NFTRRELAESLRSR--TPYQVNLLLAGYDK-VEGPSLYYIDYLGTLVKVPYAAHGYGAYFCLSILDRYYKPDMTVEEALE 158 (193)
T ss_pred HHHHHHHHHHhhcC--CCeEEEEEEEEEcC-CCCcEEEEECCCcceEECCeeEEeecHHHHHHHHHhccCCCCCHHHHHH
Confidence 99999999887543 89999999999996 6899999999999999999999999999999999999999999 99999
Q ss_pred HHHHHHHHHhhcC---CCceEEEEEecCceEEe
Q 027555 189 LAIRALLEVCSFL---YFRMSLGMVITKYYEHL 218 (222)
Q Consensus 189 l~~~~l~~~~~~d---~~~~~v~~v~~~~~~~~ 218 (222)
++++|++.+.+|| ..+++|.+|+++|++++
T Consensus 159 l~~~a~~~~~~rd~~~~~~i~i~ii~~~g~~~~ 191 (193)
T cd03758 159 LMKKCIKELKKRFIINLPNFTVKVVDKDGIRDL 191 (193)
T ss_pred HHHHHHHHHHHhccccCCceEEEEEcCCCeEeC
Confidence 9999999999997 68999999999998764
No 23
>cd03760 proteasome_beta_type_4 proteasome beta type-4 subunit. The 20S proteasome, multisubunit proteolytic complex, is the central enzyme of nonlysosomal protein degradation in both the cytosol and nucleus. It is composed of 28 subunits arranged as four homoheptameric rings that stack on top of one another forming an elongated alpha-beta-beta-alpha cylinder with a central cavity. The proteasome alpha and beta subunits are members of the N-terminal nucleophile (Ntn)-hydrolase superfamily. Their N-terminal threonine residues are exposed as a nucleophile in peptide bond hydrolysis.Mammals have 7 alpha and 7 beta proteasome subunits while archaea have one of each.
Probab=100.00 E-value=1e-45 Score=300.81 Aligned_cols=186 Identities=17% Similarity=0.195 Sum_probs=175.2
Q ss_pred cCCcEEEEEeCCEEEEEEeecccc-cccccCccccEEEecCcEEEEEeccHHHHHHHHHHHHHHHH-HhhhhcCCCCCHH
Q 027555 29 KGNAAVGVRGTDTIVLGVEKKSTV-KLQDSRSVRKIVSLDNHIALACAGLKADARVLINRARIECQ-SHRLTVEDPVTVE 106 (222)
Q Consensus 29 ~G~t~igi~~~dgVvla~d~~~~~-~l~~~~~~~Ki~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~-~~~~~~~~~i~~~ 106 (222)
+|+|+|||+++||||||+|++.+. .++.+++.+|||+|+++++|+++|..+|++.+.+++|.+++ .++++++.+++++
T Consensus 1 ~G~T~igi~~kdgVvlaad~r~~~~~~~~~~~~~KI~~i~~~i~~~~sG~~~D~~~l~~~~r~~~~~~~~~~~~~~~~~~ 80 (197)
T cd03760 1 TGTSVIAIKYKDGVIIAADTLGSYGSLARFKNVERIFKVGDNTLLGASGDYADFQYLKRLLDQLVIDDECLDDGHSLSPK 80 (197)
T ss_pred CCceEEEEEeCCcEEEEEcCcccccceeecCCCCcEEEecCcEEEEeCcchHHHHHHHHHHHHHHHHHHHHhCCCCCCHH
Confidence 589999999999999999999985 67888889999999999999999999999999999999987 5778899999999
Q ss_pred HHHHHHHHHHHhhcccCCCccceeeeEEEEEeCCCCccEEEEECCCCceecccEEEecCChHHHHHHHHhhcCC--CCh-
Q 027555 107 YITRYIAGLQQKYTQSGGVRPFGLSTLIVGFDPYTGVPSLYQTDPSGTFSAWKANATGRNSNSMREFLEKNYKE--TSG- 183 (222)
Q Consensus 107 ~la~~ls~~~~~~~~~~~~rP~~v~~ivaG~d~~~~gp~ly~iD~~G~~~~~~~~a~G~g~~~~~~~Le~~~~~--~ls- 183 (222)
.+|+++++++ |++++++|||+|++||||||+ ++||+||.+||+|++.+++++|+|+|+.+++++||+.|++ +||
T Consensus 81 ~la~~i~~~~--y~~~~~~rP~~v~~iiaG~D~-~~gp~Ly~~D~~G~~~~~~~~a~G~g~~~~~~~Le~~~~~~~~ms~ 157 (197)
T cd03760 81 EIHSYLTRVL--YNRRSKMNPLWNTLVVGGVDN-EGEPFLGYVDLLGTAYEDPHVATGFGAYLALPLLREAWEKKPDLTE 157 (197)
T ss_pred HHHHHHHHHH--HHHhhcCCCceEEEEEEEEcC-CCCEEEEEEcCCccEEECCEeEEccHHHHHHHHHHhhcCCCCCCCH
Confidence 9999999986 567778999999999999996 5899999999999999999999999999999999999999 999
Q ss_pred HHHHHHHHHHHHHHhhcC---CCceEEEEEecCceEE
Q 027555 184 QETIKLAIRALLEVCSFL---YFRMSLGMVITKYYEH 217 (222)
Q Consensus 184 ~ea~~l~~~~l~~~~~~d---~~~~~v~~v~~~~~~~ 217 (222)
+||++++++||+.+.+|| ..+++|.+|+.++++.
T Consensus 158 eea~~l~~~~l~~~~~rd~~~~~~~~i~ii~~~g~~~ 194 (197)
T cd03760 158 EEARALIEECMKVLYYRDARSINKYQIAVVTKEGVEI 194 (197)
T ss_pred HHHHHHHHHHHHHHHHhccccCCceEEEEECCCCEEe
Confidence 999999999999999998 6799999999999875
No 24
>cd03761 proteasome_beta_type_5 proteasome beta type-5 subunit. The 20S proteasome, multisubunit proteolytic complex, is the central enzyme of nonlysosomal protein degradation in both the cytosol and nucleus. It is composed of 28 subunits arranged as four homoheptameric rings that stack on top of one another forming an elongated alpha-beta-beta-alpha cylinder with a central cavity. The proteasome alpha and beta subunits are members of the N-terminal nucleophile (Ntn)-hydrolase superfamily. Their N-terminal threonine residues are exposed as a nucleophile in peptide bond hydrolysis. Mammals have 7 alpha and 7 beta proteasome subunits while archaea have one of each.
Probab=100.00 E-value=2.9e-45 Score=296.01 Aligned_cols=182 Identities=19% Similarity=0.268 Sum_probs=173.5
Q ss_pred CcEEEEEeCCEEEEEEeecccc-cccccCccccEEEecCcEEEEEeccHHHHHHHHHHHHHHHHHhhhhcCCCCCHHHHH
Q 027555 31 NAAVGVRGTDTIVLGVEKKSTV-KLQDSRSVRKIVSLDNHIALACAGLKADARVLINRARIECQSHRLTVEDPVTVEYIT 109 (222)
Q Consensus 31 ~t~igi~~~dgVvla~d~~~~~-~l~~~~~~~Ki~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~i~~~~la 109 (222)
+|+|||+++||||||+|++.++ .++.+++.+|||+|++|++|++||+.+|++.+.+++|.+++.|+++++++|+++.+|
T Consensus 1 tT~igi~~kdgVvla~d~r~~~~~~~~~~~~~KI~~I~~~i~~~~sG~~~D~~~l~~~~r~~~~~y~~~~~~~i~~~~la 80 (188)
T cd03761 1 TTTLAFIFQGGVIVAVDSRATAGSYIASQTVKKVIEINPYLLGTMAGGAADCQYWERVLGRECRLYELRNKERISVAAAS 80 (188)
T ss_pred CcEEEEEECCEEEEEEcCCccCCcEEEcCCcceEEEccCcEEEEeCccHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHH
Confidence 5899999999999999999998 577778999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhhcccCCCccceeeeEEEEEeCCCCccEEEEECCCCceecccEEEecCChHHHHHHHHhhcCCCCh-HHHHH
Q 027555 110 RYIAGLQQKYTQSGGVRPFGLSTLIVGFDPYTGVPSLYQTDPSGTFSAWKANATGRNSNSMREFLEKNYKETSG-QETIK 188 (222)
Q Consensus 110 ~~ls~~~~~~~~~~~~rP~~v~~ivaG~d~~~~gp~ly~iD~~G~~~~~~~~a~G~g~~~~~~~Le~~~~~~ls-~ea~~ 188 (222)
+++++++|.+++ .||+|++|||||| ++||+||++||+|++.+++++|+|+|+.+++++||++|+|+|+ +||++
T Consensus 81 ~~ls~~l~~~~~----~~~~v~~li~G~D--~~g~~L~~~dp~G~~~~~~~~a~G~g~~~~~~~Le~~~~~~~s~eea~~ 154 (188)
T cd03761 81 KLLSNMLYQYKG----MGLSMGTMICGWD--KTGPGLYYVDSDGTRLKGDLFSVGSGSTYAYGVLDSGYRYDLSVEEAYD 154 (188)
T ss_pred HHHHHHHHhcCC----CCeEEEEEEEEEe--CCCCEEEEEcCCceEEEcCeEEEcccHHHHHHHHHhcCCCCCCHHHHHH
Confidence 999999998854 5899999999999 4789999999999999999999999999999999999999999 99999
Q ss_pred HHHHHHHHHhhcC---CCceEEEEEecCceEEe
Q 027555 189 LAIRALLEVCSFL---YFRMSLGMVITKYYEHL 218 (222)
Q Consensus 189 l~~~~l~~~~~~d---~~~~~v~~v~~~~~~~~ 218 (222)
++.+||+.+.+|| ..++++.+|+++++++.
T Consensus 155 l~~~~l~~~~~rd~~sg~~~~v~ii~~~g~~~~ 187 (188)
T cd03761 155 LARRAIYHATHRDAYSGGNVNLYHVREDGWRKI 187 (188)
T ss_pred HHHHHHHHHHHhcccCCCCeEEEEEcCCceEEc
Confidence 9999999999997 68999999999999873
No 25
>cd03757 proteasome_beta_type_1 proteasome beta type-1 subunit. The 20S proteasome, multisubunit proteolytic complex, is the central enzyme of nonlysosomal protein degradation in both the cytosol and nucleus. It is composed of 28 subunits arranged as four homoheptameric rings that stack on top of one another forming an elongated alpha-beta-beta-alpha cylinder with a central cavity. The proteasome alpha and beta subunits are members of the N-terminal nucleophile (Ntn)-hydrolase superfamily. Their N-terminal threonine residues are exposed as a nucleophile in peptide bond hydrolysis. Mammals have 7 alpha and 7 beta proteasome subunits while archaea have one of each.
Probab=100.00 E-value=9e-45 Score=298.30 Aligned_cols=190 Identities=17% Similarity=0.277 Sum_probs=177.5
Q ss_pred HhcCCcEEEEEeCCEEEEEEeecccccc-cccCccccEEEecCcEEEEEeccHHHHHHHHHHHHHHHHHhhhhcCCCCCH
Q 027555 27 VRKGNAAVGVRGTDTIVLGVEKKSTVKL-QDSRSVRKIVSLDNHIALACAGLKADARVLINRARIECQSHRLTVEDPVTV 105 (222)
Q Consensus 27 ~~~G~t~igi~~~dgVvla~d~~~~~~l-~~~~~~~Ki~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~i~~ 105 (222)
+++|+|+|||+++||||||+|++.++++ +.+++.+||++|+++++|++||..+|++.+.+.++.+++.|++++|+++++
T Consensus 5 ~~~G~Tvigik~~dgVvlaaD~r~~~~~~~~~~~~~KI~~I~~~i~~~~sG~~aD~~~l~~~~r~~~~~~~~~~g~~i~~ 84 (212)
T cd03757 5 TDNGGTVLAIAGNDFAVIAGDTRLSEGYSILSRDSPKIFKLTDKCVLGSSGFQADILALTKRLKARIKMYKYSHNKEMST 84 (212)
T ss_pred cCCCccEEEEEcCCEEEEEECCccccCCEeEeCCCCeEEEcCCCEEEEccchHHHHHHHHHHHHHHHHHHhHHhCCCCCH
Confidence 4689999999999999999999999865 557789999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhhcccCCCccceeeeEEEEEeCCCCccEEEEECCCCceecccEEEecCChHHHHHHHHhhcC------
Q 027555 106 EYITRYIAGLQQKYTQSGGVRPFGLSTLIVGFDPYTGVPSLYQTDPSGTFSAWKANATGRNSNSMREFLEKNYK------ 179 (222)
Q Consensus 106 ~~la~~ls~~~~~~~~~~~~rP~~v~~ivaG~d~~~~gp~ly~iD~~G~~~~~~~~a~G~g~~~~~~~Le~~~~------ 179 (222)
+.+|++++++++.. +.|||+|++||||||+ +++|+||.+||+|++.+++++|+|+|+.+++++||+.|+
T Consensus 85 ~~la~~ls~~ly~~----R~~P~~~~~iiaG~D~-~~~p~Ly~~D~~G~~~~~~~~a~G~g~~~~~~~Le~~~~~~~~~~ 159 (212)
T cd03757 85 EAIAQLLSTILYSR----RFFPYYVFNILAGIDE-EGKGVVYSYDPVGSYERETYSAGGSASSLIQPLLDNQVGRKNQNN 159 (212)
T ss_pred HHHHHHHHHHHHhh----cCCCeEEEEEEEEEcC-CCCEEEEEEcCccCeeecCEEEEeecHHHHHHHHHHHHHhhccCc
Confidence 99999999999642 3579999999999996 678999999999999999999999999999999999985
Q ss_pred ---CCCh-HHHHHHHHHHHHHHhhcC---CCceEEEEEecCceEEeeec
Q 027555 180 ---ETSG-QETIKLAIRALLEVCSFL---YFRMSLGMVITKYYEHLYYS 221 (222)
Q Consensus 180 ---~~ls-~ea~~l~~~~l~~~~~~d---~~~~~v~~v~~~~~~~~~~~ 221 (222)
|+|| +||++++++||+.+.+|| ..+++|.+|+++|++.+++.
T Consensus 160 ~~~~~ms~eea~~l~~~~l~~~~~rd~~sg~~i~i~iit~~g~~~~~~~ 208 (212)
T cd03757 160 VERTPLSLEEAVSLVKDAFTSAAERDIYTGDSLEIVIITKDGIEEETFP 208 (212)
T ss_pred CCCCCCCHHHHHHHHHHHHHHHHHhCcccCCCEEEEEEcCCCEEEEeec
Confidence 8999 999999999999999998 68999999999999987763
No 26
>TIGR03634 arc_protsome_B proteasome endopeptidase complex, archaeal, beta subunit. This protein family describes the archaeal proteasome beta subunit, homologous to both the alpha subunit and to the alpha and beta subunits of eukaryotic proteasome subunits. This family is universal in the first 29 complete archaeal genomes but occasionally is duplicated.
Probab=100.00 E-value=3.1e-44 Score=289.16 Aligned_cols=180 Identities=26% Similarity=0.401 Sum_probs=171.3
Q ss_pred CCcEEEEEeCCEEEEEEeecccc-cccccCccccEEEecCcEEEEEeccHHHHHHHHHHHHHHHHHhhhhcCCCCCHHHH
Q 027555 30 GNAAVGVRGTDTIVLGVEKKSTV-KLQDSRSVRKIVSLDNHIALACAGLKADARVLINRARIECQSHRLTVEDPVTVEYI 108 (222)
Q Consensus 30 G~t~igi~~~dgVvla~d~~~~~-~l~~~~~~~Ki~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~i~~~~l 108 (222)
|+|+|||+++||||||+|++.+. +++.+++.+|||+|++++++++||..+|++.+.++++.+++.|++.++++++++.+
T Consensus 1 G~t~igi~~~dgVvla~d~~~~~~~~i~~~~~~KI~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 80 (185)
T TIGR03634 1 GTTTVGIKCKDGVVLAADKRASMGNFVASKNAKKVFQIDDYIAMTIAGSVGDAQSLVRILKAEAKLYELRRGRPMSVKAL 80 (185)
T ss_pred CCcEEEEEeCCEEEEEEcCcccCCCEEecCCcccEEEcCCCEEEEcCchHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHH
Confidence 78999999999999999999986 57778899999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhhcccCCCccceeeeEEEEEeCCCCccEEEEECCCCceecccEEEecCChHHHHHHHHhhcCCCCh-HHHH
Q 027555 109 TRYIAGLQQKYTQSGGVRPFGLSTLIVGFDPYTGVPSLYQTDPSGTFSAWKANATGRNSNSMREFLEKNYKETSG-QETI 187 (222)
Q Consensus 109 a~~ls~~~~~~~~~~~~rP~~v~~ivaG~d~~~~gp~ly~iD~~G~~~~~~~~a~G~g~~~~~~~Le~~~~~~ls-~ea~ 187 (222)
|+++++++|.+ ++|||+|++||||||+ +||+||.+||+|++.+++++++|+++++++++||+.|+|+|| +||+
T Consensus 81 a~~l~~~~~~~----~~rP~~v~~ivaG~d~--~g~~Ly~~d~~G~~~~~~~~a~G~g~~~~~~~Le~~~~~~~s~~ea~ 154 (185)
T TIGR03634 81 ATLLSNILNSN----RFFPFIVQLLVGGVDE--EGPHLYSLDPAGGIIEDDYTATGSGSPVAYGVLEDEYREDMSVEEAK 154 (185)
T ss_pred HHHHHHHHHhc----CCCCeEEEEEEEEEeC--CCCEEEEECCCCCeEECCEEEEcCcHHHHHHHHHhcCCCCCCHHHHH
Confidence 99999999875 6799999999999994 689999999999999999999999999999999999999999 9999
Q ss_pred HHHHHHHHHHhhcC---CCceEEEEEecCce
Q 027555 188 KLAIRALLEVCSFL---YFRMSLGMVITKYY 215 (222)
Q Consensus 188 ~l~~~~l~~~~~~d---~~~~~v~~v~~~~~ 215 (222)
+++++||+.+.+|| ..+++|++|+++|+
T Consensus 155 ~l~~~~l~~~~~r~~~~~~~~~v~ii~~~g~ 185 (185)
T TIGR03634 155 KLAVRAIKSAIERDVASGNGIDVAVITKDGV 185 (185)
T ss_pred HHHHHHHHHHHHhcccCCCCEEEEEEcCCCC
Confidence 99999999999997 67999999998874
No 27
>cd03762 proteasome_beta_type_6 proteasome beta type-6 subunit. The 20S proteasome, multisubunit proteolytic complex, is the central enzyme of nonlysosomal protein degradation in both the cytosol and nucleus. It is composed of 28 subunits arranged as four homoheptameric rings that stack on top of one another forming an elongated alpha-beta-beta-alpha cylinder with a central cavity. The proteasome alpha and beta subunits are members of the N-terminal nucleophile (Ntn)-hydrolase superfamily. Their N-terminal threonine residues are exposed as a nucleophile in peptide bond hydrolysis. Mammals have 7 alpha and 7 beta proteasome subunits while archaea have one of each.
Probab=100.00 E-value=4.5e-44 Score=288.99 Aligned_cols=183 Identities=19% Similarity=0.261 Sum_probs=174.1
Q ss_pred CcEEEEEeCCEEEEEEeecccc-cccccCccccEEEecCcEEEEEeccHHHHHHHHHHHHHHHHHhhhhcCCCCCHHHHH
Q 027555 31 NAAVGVRGTDTIVLGVEKKSTV-KLQDSRSVRKIVSLDNHIALACAGLKADARVLINRARIECQSHRLTVEDPVTVEYIT 109 (222)
Q Consensus 31 ~t~igi~~~dgVvla~d~~~~~-~l~~~~~~~Ki~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~i~~~~la 109 (222)
+|+|||+++||||||+|++.++ .++.+++.+|||+|+++++|++||..+|++.+.++++.+++.|+++++++++++.+|
T Consensus 1 ~t~igi~~~dgVvla~D~r~~~g~~~~~~~~~Ki~~i~~~i~~~~sG~~~D~~~l~~~l~~~~~~~~~~~~~~~~~~~~a 80 (188)
T cd03762 1 TTIIAVEYDGGVVLGADSRTSTGSYVANRVTDKLTQLHDRIYCCRSGSAADTQAIADYVRYYLDMHSIELGEPPLVKTAA 80 (188)
T ss_pred CeEEEEEECCeEEEEEcccccCCceEEcCCcccEEEccCCEEEEecccHHHHHHHHHHHHHHHHHhHHhhCCCCCHHHHH
Confidence 5899999999999999999998 577778999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhhcccCCCccceeeeEEEEEeCCCCccEEEEECCCCceecccEEEecCChHHHHHHHHhhcCCCCh-HHHHH
Q 027555 110 RYIAGLQQKYTQSGGVRPFGLSTLIVGFDPYTGVPSLYQTDPSGTFSAWKANATGRNSNSMREFLEKNYKETSG-QETIK 188 (222)
Q Consensus 110 ~~ls~~~~~~~~~~~~rP~~v~~ivaG~d~~~~gp~ly~iD~~G~~~~~~~~a~G~g~~~~~~~Le~~~~~~ls-~ea~~ 188 (222)
+++++++|+++ |||+|++||||||+ ++||+||.+||.|++.+++++++|+|+.+++++||+.|+|+|+ +||++
T Consensus 81 ~~l~~~~~~~~-----~~~~~~~ii~G~d~-~~gp~ly~~d~~G~~~~~~~~~~G~g~~~~~~~Le~~~~~~~s~~ea~~ 154 (188)
T cd03762 81 SLFKNLCYNYK-----EMLSAGIIVAGWDE-QNGGQVYSIPLGGMLIRQPFAIGGSGSTYIYGYVDANYKPGMTLEECIK 154 (188)
T ss_pred HHHHHHHHhcc-----ccceeeEEEEEEcC-CCCcEEEEECCCCCEEecCEEEEcccHHHHHHHHHhcCCCCCCHHHHHH
Confidence 99999998764 78999999999996 6789999999999999999999999999999999999999999 99999
Q ss_pred HHHHHHHHHhhcC---CCceEEEEEecCceEEee
Q 027555 189 LAIRALLEVCSFL---YFRMSLGMVITKYYEHLY 219 (222)
Q Consensus 189 l~~~~l~~~~~~d---~~~~~v~~v~~~~~~~~~ 219 (222)
++++||+.+.+|| ..+++|.+|++++++++|
T Consensus 155 l~~~al~~~~~rd~~~~~~~~i~~i~~~g~~~~~ 188 (188)
T cd03762 155 FVKNALSLAMSRDGSSGGVIRLVIITKDGVERKF 188 (188)
T ss_pred HHHHHHHHHHHhccccCCCEEEEEECCCCEEEeC
Confidence 9999999999998 679999999999998864
No 28
>TIGR03690 20S_bact_beta proteasome, beta subunit, bacterial type. Members of this family are the beta subunit of the 20S proteasome as found in Actinobacteria such as Mycobacterium, Rhodococcus, and Streptomyces. In Streptomyces, maturation during proteasome assembly was shown to remove a 53-amino acid propeptide. Most of the length of the propeptide is not included in this model.
Probab=100.00 E-value=3.3e-44 Score=296.32 Aligned_cols=189 Identities=17% Similarity=0.237 Sum_probs=174.6
Q ss_pred cCCcEEEEEeCCEEEEEEeecccc-cccccCccccEEEecCcEEEEEeccHHHHHHHHHHHHHHHHHhhhhcCCCCCHHH
Q 027555 29 KGNAAVGVRGTDTIVLGVEKKSTV-KLQDSRSVRKIVSLDNHIALACAGLKADARVLINRARIECQSHRLTVEDPVTVEY 107 (222)
Q Consensus 29 ~G~t~igi~~~dgVvla~d~~~~~-~l~~~~~~~Ki~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~i~~~~ 107 (222)
+|+|+|||+++||||||+|++.++ +++.+++.+|||+|++|++|++||..+|++.+.+++|.+++.|+++++++|+++.
T Consensus 1 ~G~T~igi~~kdgVvlaad~r~~~g~~~~~~~~~KI~~i~~~i~~~~sG~~aD~~~l~~~~r~~~~~~~~~~~~~i~~~~ 80 (219)
T TIGR03690 1 HGTTIVALTYPGGVLMAGDRRATQGNMIASRDVEKVYPTDEYSAVGIAGTAGLAIELVRLFQVELEHYEKIEGVPLTLDG 80 (219)
T ss_pred CCcEEEEEEECCEEEEEECCccccCcEEEcCCcceEEEcCCcEEEEecccHHHHHHHHHHHHHHHHHHHHHHCCCCCHHH
Confidence 489999999999999999999998 6888889999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhhcccCCCccceeeeEEEEEeCCCCccEEEEECCCCc-eecccEEEecCChHHHHHHHHhhcCCCCh-HH
Q 027555 108 ITRYIAGLQQKYTQSGGVRPFGLSTLIVGFDPYTGVPSLYQTDPSGT-FSAWKANATGRNSNSMREFLEKNYKETSG-QE 185 (222)
Q Consensus 108 la~~ls~~~~~~~~~~~~rP~~v~~ivaG~d~~~~gp~ly~iD~~G~-~~~~~~~a~G~g~~~~~~~Le~~~~~~ls-~e 185 (222)
+|++|++++|.++ ...+|||+|++||||||+++++|+||.+||+|+ +..++++|+|+|+++++++||++|+++|| +|
T Consensus 81 la~~ls~~~~~~~-~~~~rp~~v~~iiaG~D~~~~~~~Ly~~Dp~G~~~~~~~~~a~G~g~~~a~~~Le~~~~~~ms~ee 159 (219)
T TIGR03690 81 KANRLAAMVRGNL-PAAMQGLAVVPLLAGYDLDAGAGRIFSYDVTGGRYEERGYHAVGSGSVFAKGALKKLYSPDLDEDD 159 (219)
T ss_pred HHHHHHHHHHhhh-hhccCCceEEEEEEEECCCCCCcEEEEEeCCCCeeecCCeEEEeccHHHHHHHHHhcCCCCcCHHH
Confidence 9999999999877 445899999999999996236899999999995 66779999999999999999999999999 99
Q ss_pred HHHHHHHHHHHHhhcC---CC--c-----eEEEEEecCceEEe
Q 027555 186 TIKLAIRALLEVCSFL---YF--R-----MSLGMVITKYYEHL 218 (222)
Q Consensus 186 a~~l~~~~l~~~~~~d---~~--~-----~~v~~v~~~~~~~~ 218 (222)
|++++.+||+.+.+|| .. + ++|.+|++++++++
T Consensus 160 ai~l~~~al~~~~~~d~~s~~~~~~~~~~~ei~ii~~~g~~~l 202 (219)
T TIGR03690 160 ALRVAVEALYDAADDDSATGGPDLVRGIYPTVVVITADGARRV 202 (219)
T ss_pred HHHHHHHHHHHHHhcccccCCcccccccccEEEEEccCceEEc
Confidence 9999999999999998 22 2 39999998898873
No 29
>TIGR03691 20S_bact_alpha proteasome, alpha subunit, bacterial type. Members of this family are the alpha subunit of the 20S proteasome as found in Actinobacteria such as Mycobacterium, Rhodococcus, and Streptomyces. In most Actinobacteria (an exception is Propionibacterium acnes), the proteasome is accompanied by a system of tagging proteins for degradation with Pup.
Probab=100.00 E-value=1.1e-43 Score=294.14 Aligned_cols=187 Identities=17% Similarity=0.194 Sum_probs=170.9
Q ss_pred hhhHHHHHhcCCcEEEEEeCCEEEEEEeecccccccccCccccEEEecCcEEEEEeccHHHHHHHHHHHHHHHHHhhhhc
Q 027555 20 VEYALEAVRKGNAAVGVRGTDTIVLGVEKKSTVKLQDSRSVRKIVSLDNHIALACAGLKADARVLINRARIECQSHRLTV 99 (222)
Q Consensus 20 ~eya~~a~~~G~t~igi~~~dgVvla~d~~~~~~l~~~~~~~Ki~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~ 99 (222)
-|||++|+++|+|+|||+++||||||+|++. ++.+|||+|+|||+|++||+.+|++.+++.++.++..|++.+
T Consensus 17 ~EYA~kav~~g~T~VGIk~kdgVVLaaek~~-------~~~~KI~~I~d~ig~~~sG~~~D~~~lv~~~r~~a~~~~~~~ 89 (228)
T TIGR03691 17 AELARKGIARGRSVVVLTYADGILFVAENPS-------RSLHKISELYDRIGFAAVGKYNEFENLRRAGIRYADMRGYSY 89 (228)
T ss_pred HHHHHHHHHcCCcEEEEEeCCeEEEEEecCC-------CCcCcEEEecCCEEEEEcCCHHHHHHHHHHHHHHHHHHhhhc
Confidence 3899999999999999999999999999973 357899999999999999999999999999999999999999
Q ss_pred C-CCCCHHHHHHHHHHHHHhhcccCCCccceeeeEEEEEeCCCCccEEEEECCCCceeccc-EEEecCChHHHHHHHHhh
Q 027555 100 E-DPVTVEYITRYIAGLQQKYTQSGGVRPFGLSTLIVGFDPYTGVPSLYQTDPSGTFSAWK-ANATGRNSNSMREFLEKN 177 (222)
Q Consensus 100 ~-~~i~~~~la~~ls~~~~~~~~~~~~rP~~v~~ivaG~d~~~~gp~ly~iD~~G~~~~~~-~~a~G~g~~~~~~~Le~~ 177 (222)
+ .+++++.+|+++++.+..++ +++.|||+|++|++|||+.+.||+||.+||+|++.+++ ++|+|+|++.++++||++
T Consensus 90 ~~~~~~v~~la~~~tq~~~~~~-~~~~RP~gvs~Li~G~d~~~~gp~Ly~vDpsG~~~~~~~~~aiG~gs~~a~~~Lek~ 168 (228)
T TIGR03691 90 DRRDVTGRGLANAYAQTLGTIF-TEQQKPYEVEICVAEVGETPDQDQLYRITFDGSIVDERGFVVMGGTTEPIATALKES 168 (228)
T ss_pred CCCCccHHHHHHHHHhhccccc-ccccCcceEEEEEEEEcCCCCCCEEEEECCCCCceeccceEEECCChHHHHHHHHHh
Confidence 8 68999999998888887666 56789999999999998434789999999999999976 899999999999999999
Q ss_pred cCCCCh-HHHHHHHHHHHHHHhh--cC---CCceEEEEEecCc
Q 027555 178 YKETSG-QETIKLAIRALLEVCS--FL---YFRMSLGMVITKY 214 (222)
Q Consensus 178 ~~~~ls-~ea~~l~~~~l~~~~~--~d---~~~~~v~~v~~~~ 214 (222)
|+++|| +||++++++||+.+.+ |+ ..++||++|++..
T Consensus 169 y~~~ms~eeai~la~~aL~~~~~~~r~~~~~~~iEv~ii~k~~ 211 (228)
T TIGR03691 169 YRDGLSLADALGLAVQALRAGGNGEKRELDAASLEVAVLDRSR 211 (228)
T ss_pred cCCCCCHHHHHHHHHHHHHHHhccccccCCccceEEEEEeCCC
Confidence 999999 9999999999999965 42 6799999998543
No 30
>cd03764 proteasome_beta_archeal Archeal proteasome, beta subunit. The 20S proteasome, multisubunit proteolytic complex, is the central enzyme for non-lysosomal protein degradation in both the cytosol and the nucleus. It is composed of 28 subunits arranged as four homoheptameric rings that stack on top of one another forming an elongated alpha-beta-beta-alpha cylinder with a central cavity. The proteasome alpha and beta subunits are both members of the N-terminal nucleophile (Ntn)-hydrolase superfamily. Their N-terminal threonine residues are exposed as a nucleophile in peptide bond hydrolysis. Mammals have 7 alpha and 7 beta proteasome subunits while archaea have one of each.
Probab=100.00 E-value=2.8e-43 Score=284.31 Aligned_cols=182 Identities=28% Similarity=0.402 Sum_probs=173.1
Q ss_pred CcEEEEEeCCEEEEEEeecccc-cccccCccccEEEecCcEEEEEeccHHHHHHHHHHHHHHHHHhhhhcCCCCCHHHHH
Q 027555 31 NAAVGVRGTDTIVLGVEKKSTV-KLQDSRSVRKIVSLDNHIALACAGLKADARVLINRARIECQSHRLTVEDPVTVEYIT 109 (222)
Q Consensus 31 ~t~igi~~~dgVvla~d~~~~~-~l~~~~~~~Ki~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~i~~~~la 109 (222)
+|+|||+++||||||+|++.++ .++.+++.+||++|+++++++++|..+|++.+.+.++.+++.|++.++++++++.++
T Consensus 1 tt~iai~~~dgvvia~d~r~~~g~~~~~~~~~KI~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~~~~~~l~ 80 (188)
T cd03764 1 TTTVGIVCKDGVVLAADKRASMGNFIASKNVKKIFQIDDKIAMTIAGSVGDAQSLVRILKAEARLYELRRGRPMSIKALA 80 (188)
T ss_pred CcEEEEEeCCEEEEEEccccccCCEEecCCcccEEEccCCEEEEcCccHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHH
Confidence 5899999999999999999998 577788999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhhcccCCCccceeeeEEEEEeCCCCccEEEEECCCCceecccEEEecCChHHHHHHHHhhcCCCCh-HHHHH
Q 027555 110 RYIAGLQQKYTQSGGVRPFGLSTLIVGFDPYTGVPSLYQTDPSGTFSAWKANATGRNSNSMREFLEKNYKETSG-QETIK 188 (222)
Q Consensus 110 ~~ls~~~~~~~~~~~~rP~~v~~ivaG~d~~~~gp~ly~iD~~G~~~~~~~~a~G~g~~~~~~~Le~~~~~~ls-~ea~~ 188 (222)
+++++.+|.+ ++|||+|++|||||| +++|+||.+||+|++.+++++|+|+|+++++++||+.|+++|+ +||++
T Consensus 81 ~~i~~~~~~~----~~~P~~~~~lvaG~d--~~~~~ly~~D~~G~~~~~~~~a~G~g~~~~~~~L~~~~~~~~~~~ea~~ 154 (188)
T cd03764 81 TLLSNILNSS----KYFPYIVQLLIGGVD--EEGPHLYSLDPLGSIIEDKYTATGSGSPYAYGVLEDEYKEDMTVEEAKK 154 (188)
T ss_pred HHHHHHHHhc----CCCCcEEEEEEEEEe--CCCCEEEEECCCCCEEEcCEEEEcCcHHHHHHHHHhcCCCCCCHHHHHH
Confidence 9999999875 579999999999999 4789999999999999999999999999999999999999999 99999
Q ss_pred HHHHHHHHHhhcC---CCceEEEEEecCceEEe
Q 027555 189 LAIRALLEVCSFL---YFRMSLGMVITKYYEHL 218 (222)
Q Consensus 189 l~~~~l~~~~~~d---~~~~~v~~v~~~~~~~~ 218 (222)
++++||+.+.+|| ..+++|++|+.++++.+
T Consensus 155 l~~~~l~~~~~rd~~~~~~i~i~iv~~~g~~~~ 187 (188)
T cd03764 155 LAIRAIKSAIERDSASGDGIDVVVITKDGYKEL 187 (188)
T ss_pred HHHHHHHHHHhhcCCCCCcEEEEEECCCCeEeC
Confidence 9999999999997 67999999999998763
No 31
>cd03763 proteasome_beta_type_7 proteasome beta type-7 subunit. The 20S proteasome, multisubunit proteolytic complex, is the central enzyme of nonlysosomal protein degradation in both the cytosol and nucleus. It is composed of 28 subunits arranged as four homoheptameric rings that stack on top of one another forming an elongated alpha-beta-beta-alpha cylinder with a central cavity. The proteasome alpha and beta subunits are members of the N-terminal nucleophile (Ntn)-hydrolase superfamily. Their N-terminal threonine residues are exposed as a nucleophile in peptide bond hydrolysis. Mammals have 7 alpha and 7 beta proteasome subunits while archaea have one of each.
Probab=100.00 E-value=4.8e-43 Score=283.28 Aligned_cols=180 Identities=23% Similarity=0.235 Sum_probs=170.8
Q ss_pred CcEEEEEeCCEEEEEEeeccccc-ccccCccccEEEecCcEEEEEeccHHHHHHHHHHHHHHHHHhhhhcCCCCCHHHHH
Q 027555 31 NAAVGVRGTDTIVLGVEKKSTVK-LQDSRSVRKIVSLDNHIALACAGLKADARVLINRARIECQSHRLTVEDPVTVEYIT 109 (222)
Q Consensus 31 ~t~igi~~~dgVvla~d~~~~~~-l~~~~~~~Ki~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~i~~~~la 109 (222)
+|+|||+++||||||+|+|.+++ ++.+++.+|||+|+++++|++||..+|++.+.+.++.+++.|+++++++++++.+|
T Consensus 1 tt~igi~~~dgvvlaad~r~~~g~~~~~~~~~Ki~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~~~~~~~a 80 (189)
T cd03763 1 TTIVGVVFKDGVVLGADTRATEGPIVADKNCEKIHYIAPNIYCCGAGTAADTEAVTNMISSNLELHRLNTGRKPRVVTAL 80 (189)
T ss_pred CeEEEEEECCeEEEEEcCCcccCceEEcCCccceEEecCCEEEEcCccHHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHH
Confidence 58999999999999999999984 67778899999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhhcccCCCccceeeeEEEEEeCCCCccEEEEECCCCceecccEEEecCChHHHHHHHHhhcCCCCh-HHHHH
Q 027555 110 RYIAGLQQKYTQSGGVRPFGLSTLIVGFDPYTGVPSLYQTDPSGTFSAWKANATGRNSNSMREFLEKNYKETSG-QETIK 188 (222)
Q Consensus 110 ~~ls~~~~~~~~~~~~rP~~v~~ivaG~d~~~~gp~ly~iD~~G~~~~~~~~a~G~g~~~~~~~Le~~~~~~ls-~ea~~ 188 (222)
+++++.+|.|. .|++|++|||||| ++||+||.+||.|++.+++++|+|+++.+++++||++|+|+|| +||++
T Consensus 81 ~~l~~~l~~~~-----~p~~v~~ivaG~d--~~g~~ly~~d~~G~~~~~~~~a~G~~~~~~~~~L~~~~~~~ls~~ea~~ 153 (189)
T cd03763 81 TMLKQHLFRYQ-----GHIGAALVLGGVD--YTGPHLYSIYPHGSTDKLPFVTMGSGSLAAMSVLEDRYKPDMTEEEAKK 153 (189)
T ss_pred HHHHHHHHHcC-----CccceeEEEEeEc--CCCCEEEEECCCCCEEecCEEEEcCCHHHHHHHHHhhcCCCCCHHHHHH
Confidence 99999998763 3999999999999 4679999999999999999999999999999999999999999 99999
Q ss_pred HHHHHHHHHhhcC---CCceEEEEEecCceEE
Q 027555 189 LAIRALLEVCSFL---YFRMSLGMVITKYYEH 217 (222)
Q Consensus 189 l~~~~l~~~~~~d---~~~~~v~~v~~~~~~~ 217 (222)
++++||+.+.+|| ..+++|.+|++++++.
T Consensus 154 l~~~~l~~~~~rd~~~~~~~~v~ii~~~g~~~ 185 (189)
T cd03763 154 LVCEAIEAGIFNDLGSGSNVDLCVITKDGVEY 185 (189)
T ss_pred HHHHHHHHHHHhcCcCCCceEEEEEcCCcEEE
Confidence 9999999999998 5799999999999875
No 32
>PTZ00488 Proteasome subunit beta type-5; Provisional
Probab=100.00 E-value=4e-43 Score=294.03 Aligned_cols=186 Identities=19% Similarity=0.256 Sum_probs=173.0
Q ss_pred HHhcCCcEEEEEeCCEEEEEEeecccc-cccccCccccEEEecCcEEEEEeccHHHHHHHHHHHHHHHHHhhhhcCCCCC
Q 027555 26 AVRKGNAAVGVRGTDTIVLGVEKKSTV-KLQDSRSVRKIVSLDNHIALACAGLKADARVLINRARIECQSHRLTVEDPVT 104 (222)
Q Consensus 26 a~~~G~t~igi~~~dgVvla~d~~~~~-~l~~~~~~~Ki~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~i~ 104 (222)
.+.+|+|+|||+++||||||+|++.+. .++.+++.+|||+|++++++++||+.+|++.+.+.+|.+++.|++++|++|+
T Consensus 35 ~~~~G~T~IgIk~kdgVvlAaD~r~~~g~li~~~~~~KI~~I~~~i~~~~sG~~aD~~~l~~~lr~~~~~y~~~~g~~is 114 (247)
T PTZ00488 35 EFAHGTTTLAFKYGGGIIIAVDSKATAGPYIASQSVKKVIEINPTLLGTMAGGAADCSFWERELAMQCRLYELRNGELIS 114 (247)
T ss_pred ccCCCceEEEEEeCCEEEEEEecCcccCCEEEcCCcCceEEcCCCEEEEeCcCHHHHHHHHHHHHHHHHHHHHHHCCCCC
Confidence 456899999999999999999999986 6777889999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhhcccCCCccceeeeEEEEEeCCCCccEEEEECCCCceecccEEEecCChHHHHHHHHhhcCCCCh-
Q 027555 105 VEYITRYIAGLQQKYTQSGGVRPFGLSTLIVGFDPYTGVPSLYQTDPSGTFSAWKANATGRNSNSMREFLEKNYKETSG- 183 (222)
Q Consensus 105 ~~~la~~ls~~~~~~~~~~~~rP~~v~~ivaG~d~~~~gp~ly~iD~~G~~~~~~~~a~G~g~~~~~~~Le~~~~~~ls- 183 (222)
++.+|++|++++|.+ +..|+.+++|||||| ++||+||++||+|++.+++++|+|+|+.+++++||+.|+++||
T Consensus 115 v~~la~~ls~~l~~~----R~~~~~v~~iiaG~D--~~gp~Ly~vDp~Gs~~~~~~~a~G~gs~~~~~~Le~~~k~dms~ 188 (247)
T PTZ00488 115 VAAASKILANIVWNY----KGMGLSMGTMICGWD--KKGPGLFYVDNDGTRLHGNMFSCGSGSTYAYGVLDAGFKWDLND 188 (247)
T ss_pred HHHHHHHHHHHHHhc----CCCCeeEEEEEEEEe--CCCCEEEEEcCCcceeecCCEEEccCHHHHHHHHHhcCcCCCCH
Confidence 999999999999865 223555668999999 4689999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHhhcC---CCceEEEEEecCceEE
Q 027555 184 QETIKLAIRALLEVCSFL---YFRMSLGMVITKYYEH 217 (222)
Q Consensus 184 ~ea~~l~~~~l~~~~~~d---~~~~~v~~v~~~~~~~ 217 (222)
+||++++++||+.+.+|| ..+++|++|+++++++
T Consensus 189 eEai~l~~kal~~~~~Rd~~sg~~~ei~iI~k~g~~~ 225 (247)
T PTZ00488 189 EEAQDLGRRAIYHATFRDAYSGGAINLYHMQKDGWKK 225 (247)
T ss_pred HHHHHHHHHHHHHHHHhccccCCCeEEEEEcCCccEE
Confidence 999999999999999998 6899999999999865
No 33
>cd03765 proteasome_beta_bacterial Bacterial proteasome, beta subunit. The 20S proteasome, multisubunit proteolytic complex, is the central enzyme of nonlysosomal protein degradation in both the cytosol and nucleus. It is composed of 28 subunits arranged as four homoheptameric rings that stack on top of one another forming an elongated alpha-beta-beta-alpha cylinder with a central cavity. The proteasome alpha and beta subunits are members of the N-terminal nucleophile (Ntn)-hydrolase superfamily. Their N-terminal threonine residues are exposed as a nucleophile in peptide bond hydrolysis. Mammals have 7 alpha and 7 beta proteasome subunits while archaea have one of each.
Probab=100.00 E-value=7.6e-43 Score=289.76 Aligned_cols=184 Identities=15% Similarity=0.151 Sum_probs=169.2
Q ss_pred cEEEEEeCCEEEEEEeecccccccccCccccEEEec----CcEEEEEeccHHHHHHHHHHHHHHHHHhhhhcCC-CCCHH
Q 027555 32 AAVGVRGTDTIVLGVEKKSTVKLQDSRSVRKIVSLD----NHIALACAGLKADARVLINRARIECQSHRLTVED-PVTVE 106 (222)
Q Consensus 32 t~igi~~~dgVvla~d~~~~~~l~~~~~~~Ki~~i~----~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~-~i~~~ 106 (222)
=+|||+++||||||+|+|.+++++..++.+||++|+ +||+|+.||..+|++.+.+++|.+++.|++++|+ +++++
T Consensus 2 ~~vGIk~kdGVVLaadkr~~~~l~~~~~~~KI~~I~~~~d~~I~~~~sG~~aD~~~l~~~~r~~~~~~~~~~g~~~~~v~ 81 (236)
T cd03765 2 YCLGIKLDAGLVFASDSRTNAGVDNISTYRKMFVFSVPGERVIVLLTAGNLATTQAVISLLQRDLEDPEETNLLNAPTMF 81 (236)
T ss_pred eEEEEEeCCeEEEEEccCccCCCccccccceEEEecCCCCCEEEEEcCCcHHHHHHHHHHHHHHHHhhHHhhCCCCCCHH
Confidence 379999999999999999988876666899999998 8999999999999999999999999999999999 89999
Q ss_pred HHHHHHHHHHHh-hcccCC-----CccceeeeEEEEEeCCCCccEEEEECCCCceecc----cEEEecCChHHHHHHHHh
Q 027555 107 YITRYIAGLQQK-YTQSGG-----VRPFGLSTLIVGFDPYTGVPSLYQTDPSGTFSAW----KANATGRNSNSMREFLEK 176 (222)
Q Consensus 107 ~la~~ls~~~~~-~~~~~~-----~rP~~v~~ivaG~d~~~~gp~ly~iD~~G~~~~~----~~~a~G~g~~~~~~~Le~ 176 (222)
.+|+++++++++ +++..+ .|||+|++||+|||+ +.||+||.+||+|++.++ +++|+|. +++++++||+
T Consensus 82 ~la~~i~~~l~~~~~q~~~~~~~~~rp~gvslIigG~D~-~~Gp~LY~idpsG~~~e~~a~~~~~AiG~-~~~a~~~Lek 159 (236)
T cd03765 82 DAARYVGETLREVQEQDREALKKAGIDFSASFILGGQIK-GEEPRLFLIYPQGNFIEATPDTPFLQIGE-TKYGKPILDR 159 (236)
T ss_pred HHHHHHHHHHHHHHhhcccccccCCcceEEEEEEEeEEC-CCCCEEEEECCCCCEEeecCCCceeeeCC-chhhHHHHHH
Confidence 999999998654 455443 489999999999996 678999999999999998 5689996 6999999999
Q ss_pred hcCCCCh-HHHHHHHHHHHHHHhhcC---CCceEEEEEecCceEE
Q 027555 177 NYKETSG-QETIKLAIRALLEVCSFL---YFRMSLGMVITKYYEH 217 (222)
Q Consensus 177 ~~~~~ls-~ea~~l~~~~l~~~~~~d---~~~~~v~~v~~~~~~~ 217 (222)
+|+++|| +||++++++||..++.|| ..+++|.+|+++|++.
T Consensus 160 ~yk~~ms~eeai~la~~al~~a~~rd~~sg~~iev~vI~k~G~~~ 204 (236)
T cd03765 160 VITPDTSLEDAAKCALVSMDSTMRSNLSVGPPLDLLVYERDSLQV 204 (236)
T ss_pred hcCCCCCHHHHHHHHHHHHHHHHHhcCCCCCCEEEEEEECCCeee
Confidence 9999999 999999999999999998 6799999999999987
No 34
>PF00227 Proteasome: Proteasome subunit; InterPro: IPR001353 ATP-dependent protease complexes are present in all three kingdoms of life, where they rid the cell of misfolded or damaged proteins and control the level of certain regulatory proteins. They include the proteasome in Eukaryotes, Archaea, and Actinomycetales and the HslVU (ClpQY, clpXP) complex in other eubacteria. Genes homologous to eubacterial HslV (ClpQ) and HslU (ClpY, clpX) have also been demonstrated in to be present in the genome of trypanosomatid protozoa []. The proteasome (or macropain) (3.4.25.1 from EC) [, , , , ] is a eukaryotic and archaeal multicatalytic proteinase complex that seems to be involved in an ATP/ubiquitin-dependent nonlysosomal proteolytic pathway. In eukaryotes the proteasome is composed of about 28 distinct subunits which form a highly ordered ring-shaped structure (20S ring) of about 700 kDa. Most proteasome subunits can be classified, on the basis on sequence similarities into two groups, alpha (A) and beta (B). The prokaryotic ATP-dependent proteasome is coded for by the heat-shock locus VU (HslVU). It consists of HslV, the protease (MEROPS peptidase subfamily T1B), and HslU, IPR004491 from INTERPRO, the ATPase and chaperone belonging to the AAA/Clp/Hsp100 family. The crystal structure of Thermotoga maritima HslV has been determined to 2.1-A resolution. The structure of the dodecameric enzyme is well conserved compared to those from Escherichia coli and Haemophilus influenzae [, ]. This entry contains threonine peptidases and non-peptidase homologs belong to MEROPS peptidase family T1 (proteasome family, clan PB(T)). The family consists of the protease components of the archaeal and bacterial proteasomes and the alpha and beta subunits of the eukaryotic proteasome. ; GO: 0004298 threonine-type endopeptidase activity, 0051603 proteolysis involved in cellular protein catabolic process, 0005839 proteasome core complex; PDB: 3KRD_1 3H6F_M 2FHH_F 3HF9_F 2FHG_D 3HFA_B 3H6I_K 3MI0_A 3MFE_1 3MKA_F ....
Probab=100.00 E-value=7.2e-43 Score=281.64 Aligned_cols=183 Identities=37% Similarity=0.612 Sum_probs=172.8
Q ss_pred HhcCCcEEEEEeCCEEEEEEeecccc--cccccCccccEEEecCcEEEEEeccHHHHHHHHHHHHHHHHHhhhhcCCCCC
Q 027555 27 VRKGNAAVGVRGTDTIVLGVEKKSTV--KLQDSRSVRKIVSLDNHIALACAGLKADARVLINRARIECQSHRLTVEDPVT 104 (222)
Q Consensus 27 ~~~G~t~igi~~~dgVvla~d~~~~~--~l~~~~~~~Ki~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~i~ 104 (222)
+++|+|+|||+++||||||+|++.+. .+..++..+|||+|++++++++||..+|++.+.++++.++..|++.++.+++
T Consensus 1 v~~G~t~vgi~~~dgvvla~d~~~~~g~~~~~~~~~~ki~~i~~~i~~~~sG~~~D~~~l~~~l~~~~~~~~~~~~~~~~ 80 (190)
T PF00227_consen 1 VNNGTTVVGIKGKDGVVLAADKRISYGSKLRSPNTVDKIFKINDNIIIGFSGLTADFQYLIRRLREEAQEYRFSYGRPIS 80 (190)
T ss_dssp HHTSBEEEEEEESSEEEEEEEEEEEETTEEEESSTSSSEEEEETTEEEEEEESHHHHHHHHHHHHHHHHHHHHHHSSGTC
T ss_pred CCCCeEEEEEEECCEEEEEEccccccccccccccccceeeeccCcceeeccccccchHHHHhhhcccchhhhhccCcccc
Confidence 57999999999999999999999985 3445555799999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhhcccCCCccceeeeEEEEEeCCCCccEEEEECCCCceecc-cEEEecCChHHHHHHHHhhcCCCCh
Q 027555 105 VEYITRYIAGLQQKYTQSGGVRPFGLSTLIVGFDPYTGVPSLYQTDPSGTFSAW-KANATGRNSNSMREFLEKNYKETSG 183 (222)
Q Consensus 105 ~~~la~~ls~~~~~~~~~~~~rP~~v~~ivaG~d~~~~gp~ly~iD~~G~~~~~-~~~a~G~g~~~~~~~Le~~~~~~ls 183 (222)
++.+++.++..++.+++++++||+++++|+||||+ +++|+||.+||+|++.++ +++|+|+|++.++++||+.|+++|+
T Consensus 81 ~~~l~~~~~~~~~~~~~~~~~~p~~~~~li~G~d~-~~~~~l~~vd~~G~~~~~~~~~aiG~g~~~~~~~l~~~~~~~~~ 159 (190)
T PF00227_consen 81 PEYLAKAIASLIQNYTYRSGRRPYGVSLLIAGYDE-DGGPQLYSVDPSGSYIECKRFAAIGSGSQFAQPILEKLYKPDLS 159 (190)
T ss_dssp HHHHHHHHHHHHHHHHHHTTTSTTSEEEEEEEEET-TTEEEEEEEETTSEEEEBSSEEEESTTHHHHHHHHHHHHTTTSS
T ss_pred chhhhhhhHHHHhhhcccccccCccccceeeeecc-ccccceeeeccccccccccccccchhcchhhhHHHHhhccCCCC
Confidence 99999999999999999999999999999999997 677999999999999999 6999999999999999999999999
Q ss_pred -HHHHHHHHHHHHHHhhcC---CCceEEEEE
Q 027555 184 -QETIKLAIRALLEVCSFL---YFRMSLGMV 210 (222)
Q Consensus 184 -~ea~~l~~~~l~~~~~~d---~~~~~v~~v 210 (222)
+||++++++||+.+.++| ..+++|.||
T Consensus 160 ~~ea~~~~~~~l~~~~~~d~~~~~~~~v~vi 190 (190)
T PF00227_consen 160 LEEAIELALKALKEAIDRDILSGDNIEVAVI 190 (190)
T ss_dssp HHHHHHHHHHHHHHHHHHBTTSTSEEEEEEE
T ss_pred HHHHHHHHHHHHHHHHhhCCccCCeEEEEEC
Confidence 999999999999999987 679999876
No 35
>cd01912 proteasome_beta proteasome beta subunit. The 20S proteasome, multisubunit proteolytic complex, is the central enzyme of nonlysosomal protein degradation in both the cytosol and nucleus. It is composed of 28 subunits arranged as four homoheptameric rings that stack on top of one another forming an elongated alpha-beta-beta-alpha cylinder with a central cavity. The proteasome alpha and beta subunits are members of the N-terminal nucleophile (Ntn)-hydrolase superfamily. Their N-terminal threonine residues are exposed as a nucleophile in peptide bond hydrolysis. Mammals have 7 alpha and 7 beta proteasome subunits while archaea have one of each.
Probab=100.00 E-value=1.5e-42 Score=280.02 Aligned_cols=182 Identities=23% Similarity=0.329 Sum_probs=173.0
Q ss_pred CcEEEEEeCCEEEEEEeecccccccc-cCccccEEEecCcEEEEEeccHHHHHHHHHHHHHHHHHhhhhcCCCCCHHHHH
Q 027555 31 NAAVGVRGTDTIVLGVEKKSTVKLQD-SRSVRKIVSLDNHIALACAGLKADARVLINRARIECQSHRLTVEDPVTVEYIT 109 (222)
Q Consensus 31 ~t~igi~~~dgVvla~d~~~~~~l~~-~~~~~Ki~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~i~~~~la 109 (222)
+|+|||+++||||||+|++.++++.. +++.+|||+|++++++++||+.+|++.+.++++.++..|++.++++++++.++
T Consensus 1 tt~i~i~~~dgVvla~d~~~~~~~~~~~~~~~Ki~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~~~~~~l~ 80 (189)
T cd01912 1 TTIVGIKGKDGVVLAADTRASAGSLVASRNFDKIFKISDNILLGTAGSAADTQALTRLLKRNLRLYELRNGRELSVKAAA 80 (189)
T ss_pred CcEEEEEeCCEEEEEEcCCcccCcEEEcCCcCcEEEccCCEEEEccccHHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHH
Confidence 58999999999999999999986544 78899999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhhcccCCCccceeeeEEEEEeCCCCccEEEEECCCCceecccEEEecCChHHHHHHHHhhcCCCCh-HHHHH
Q 027555 110 RYIAGLQQKYTQSGGVRPFGLSTLIVGFDPYTGVPSLYQTDPSGTFSAWKANATGRNSNSMREFLEKNYKETSG-QETIK 188 (222)
Q Consensus 110 ~~ls~~~~~~~~~~~~rP~~v~~ivaG~d~~~~gp~ly~iD~~G~~~~~~~~a~G~g~~~~~~~Le~~~~~~ls-~ea~~ 188 (222)
+++++++|++++ |||++++||||+|+ +++|+||.+||+|++.+++++++|+++++++++||+.|+|+|| +||++
T Consensus 81 ~~l~~~~~~~~~----~P~~~~~iv~G~d~-~~~~~l~~id~~G~~~~~~~~a~G~~~~~~~~~Le~~~~~~~s~~ea~~ 155 (189)
T cd01912 81 NLLSNILYSYRG----FPYYVSLIVGGVDK-GGGPFLYYVDPLGSLIEAPFVATGSGSKYAYGILDRGYKPDMTLEEAVE 155 (189)
T ss_pred HHHHHHHHhcCC----CCeEEEEEEEEEcC-CCCeEEEEECCCCCeEecCEEEEcccHHHHHHHHHhccCCCCCHHHHHH
Confidence 999999988764 89999999999996 5899999999999999999999999999999999999999999 99999
Q ss_pred HHHHHHHHHhhcC---CCceEEEEEecCceEE
Q 027555 189 LAIRALLEVCSFL---YFRMSLGMVITKYYEH 217 (222)
Q Consensus 189 l~~~~l~~~~~~d---~~~~~v~~v~~~~~~~ 217 (222)
++.+||+.+.+|| ..+++|.+|+.++++.
T Consensus 156 ~~~~~l~~~~~~d~~~~~~~~v~vi~~~g~~~ 187 (189)
T cd01912 156 LVKKAIDSAIERDLSSGGGVDVAVITKDGVEE 187 (189)
T ss_pred HHHHHHHHHHHhcCccCCcEEEEEECCCCEEE
Confidence 9999999999987 6899999999999875
No 36
>cd01906 proteasome_protease_HslV proteasome_protease_HslV. This group contains the eukaryotic proteosome alpha and beta subunits and the prokaryotic protease hslV subunit. Proteasomes are large multimeric self-compartmentalizing proteases, involved in the clearance of misfolded proteins, the breakdown of regulatory proteins, and the processing of proteins such as the preparation of peptides for immune presentation. Two main proteasomal types are distinguished by their different tertiary structures: the eukaryotic/archeal 20S proteasome and the prokaryotic proteasome-like heat shock protein encoded by heat shock locus V, hslV. The proteasome core particle is a highly conserved cylindrical structure made up of non-identical subunits that have their active sites on the inner walls of a large central cavity. The proteasome subunits of bacteria, archaea, and eukaryotes all share a conserved Ntn (N terminal nucleophile) hydrolase fold and a catalytic mechanism involving an N-terminal nucleo
Probab=100.00 E-value=2.8e-41 Score=270.58 Aligned_cols=177 Identities=40% Similarity=0.601 Sum_probs=167.4
Q ss_pred CcEEEEEeCCEEEEEEeecccccccc-cCccccEEEecCcEEEEEeccHHHHHHHHHHHHHHHHHhhhhcCCCCCHHHHH
Q 027555 31 NAAVGVRGTDTIVLGVEKKSTVKLQD-SRSVRKIVSLDNHIALACAGLKADARVLINRARIECQSHRLTVEDPVTVEYIT 109 (222)
Q Consensus 31 ~t~igi~~~dgVvla~d~~~~~~l~~-~~~~~Ki~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~i~~~~la 109 (222)
+|+|||+++||||||+|++.++++.. +++.+|||+|+++++++++|..+|++.+.+.+++++..|+++++++++++.++
T Consensus 1 tt~igi~~~dgvvla~d~~~~~~~~~~~~~~~Ki~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~~~~~~l~ 80 (182)
T cd01906 1 TTIVGIKGKDGVVLAADKRVTSGLLVASSTVEKIFKIDDHIGCAFAGLAADAQTLVERLRKEAQLYRLRYGEPIPVEALA 80 (182)
T ss_pred CcEEEEEeCCEEEEEEecccCCcCeecCCCcceEEEECCCEEEEEeeCHHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHH
Confidence 58999999999999999999986543 77899999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhhcccCCCccceeeeEEEEEeCCCCccEEEEECCCCceecccEEEecCChHHHHHHHHhhcCCCCh-HHHHH
Q 027555 110 RYIAGLQQKYTQSGGVRPFGLSTLIVGFDPYTGVPSLYQTDPSGTFSAWKANATGRNSNSMREFLEKNYKETSG-QETIK 188 (222)
Q Consensus 110 ~~ls~~~~~~~~~~~~rP~~v~~ivaG~d~~~~gp~ly~iD~~G~~~~~~~~a~G~g~~~~~~~Le~~~~~~ls-~ea~~ 188 (222)
+++++++|+++++ +||+++++|+||+|+ +++|+||.+||.|++.+++++|+|++++++.++||+.|+++|| +||++
T Consensus 81 ~~l~~~~~~~~~~--~~p~~~~~lv~G~d~-~~~~~Ly~id~~G~~~~~~~~a~G~g~~~~~~~L~~~~~~~~s~~ea~~ 157 (182)
T cd01906 81 KLLANLLYEYTQS--LRPLGVSLLVAGVDE-EGGPQLYSVDPSGSYIEYKATAIGSGSQYALGILEKLYKPDMTLEEAIE 157 (182)
T ss_pred HHHHHHHHHhCCC--ccChheEEEEEEEeC-CCCcEEEEECCCCCEeeccEEEECCCcHHHHHHHHHHccCCCCHHHHHH
Confidence 9999999999876 799999999999996 5899999999999999999999999999999999999999999 99999
Q ss_pred HHHHHHHHHhhcC---CCceEEEEE
Q 027555 189 LAIRALLEVCSFL---YFRMSLGMV 210 (222)
Q Consensus 189 l~~~~l~~~~~~d---~~~~~v~~v 210 (222)
++++||+.+.++| ..++++.+|
T Consensus 158 l~~~~l~~~~~~~~~~~~~~~i~ii 182 (182)
T cd01906 158 LALKALKSALERDLYSGGNIEVAVI 182 (182)
T ss_pred HHHHHHHHHHcccCCCCCCEEEEEC
Confidence 9999999999997 467888764
No 37
>KOG0177 consensus 20S proteasome, regulatory subunit beta type PSMB2/PRE1 [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1.8e-39 Score=252.36 Aligned_cols=185 Identities=20% Similarity=0.269 Sum_probs=176.3
Q ss_pred CcEEEEEeCCEEEEEEeeccccc-ccccCccccEEEecCcEEEEEeccHHHHHHHHHHHHHHHHHhhhhcCCCCCHHHHH
Q 027555 31 NAAVGVRGTDTIVLGVEKKSTVK-LQDSRSVRKIVSLDNHIALACAGLKADARVLINRARIECQSHRLTVEDPVTVEYIT 109 (222)
Q Consensus 31 ~t~igi~~~dgVvla~d~~~~~~-l~~~~~~~Ki~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~i~~~~la 109 (222)
.+++||++.|+|++|+|+....+ ++.+++.+|++.+++++.|+++|..+|+..+.+++.++++.|+.++|.++||+..|
T Consensus 2 e~llGIkg~dfvilAsDt~~~~si~~~k~~~dK~~~ls~~~lm~~~Ge~GDt~qF~eyi~~Ni~LYkirnGyeLSp~~aa 81 (200)
T KOG0177|consen 2 ETLLGIKGPDFVILASDTSAARSILVLKDDHDKIHRLSDHILMATVGEAGDTVQFTEYIQKNIQLYKIRNGYELSPSAAA 81 (200)
T ss_pred ceEEEeecCCEEEEeecchhhcceEEecccccceEEeccceeeeeecCCCceehHHHHHHhhhhHHhhhcCCcCCHHHHH
Confidence 47899999999999999998776 56788999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhhcccCCCccceeeeEEEEEeCCCCccEEEEECCCCceecccEEEecCChHHHHHHHHhhcCCCCh-HHHHH
Q 027555 110 RYIAGLQQKYTQSGGVRPFGLSTLIVGFDPYTGVPSLYQTDPSGTFSAWKANATGRNSNSMREFLEKNYKETSG-QETIK 188 (222)
Q Consensus 110 ~~ls~~~~~~~~~~~~rP~~v~~ivaG~d~~~~gp~ly~iD~~G~~~~~~~~a~G~g~~~~~~~Le~~~~~~ls-~ea~~ 188 (222)
+++++.+.++.++ .+||.|++++||+|+ +.||.||++|..|+..+.++++.|.++.++.++|++.|+|+|| +||++
T Consensus 82 hFtR~~La~~LRs--r~~yqV~~LvaGYd~-~~gp~L~~iDyla~~~~vpy~~hGy~~~f~~sIlDr~Y~pdmt~eea~~ 158 (200)
T KOG0177|consen 82 HFTRRELAESLRS--RTPYQVNILVAGYDP-EEGPELYYIDYLATLVSVPYAAHGYGSYFCLSILDRYYKPDMTIEEALD 158 (200)
T ss_pred HHHHHHHHHHHhc--CCCceEEEEEeccCC-CCCCceeeehhhhhcccCCcccccchhhhhHHHHHhhhCCCCCHHHHHH
Confidence 9999999999864 489999999999999 7789999999999999999999999999999999999999999 99999
Q ss_pred HHHHHHHHHhhc---CCCceEEEEEecCceEEe
Q 027555 189 LAIRALLEVCSF---LYFRMSLGMVITKYYEHL 218 (222)
Q Consensus 189 l~~~~l~~~~~~---d~~~~~v~~v~~~~~~~~ 218 (222)
+..+|+.+...| +.+++.|.+|+++|+|+.
T Consensus 159 lmkKCv~El~kRlvin~~~f~v~IVdkdGir~~ 191 (200)
T KOG0177|consen 159 LMKKCVLELKKRLVINLPGFIVKIVDKDGIRKL 191 (200)
T ss_pred HHHHHHHHHHHhcccCCCCcEEEEEcCCCceec
Confidence 999999999999 588999999999999984
No 38
>KOG0179 consensus 20S proteasome, regulatory subunit beta type PSMB1/PRE7 [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=8.6e-38 Score=246.42 Aligned_cols=190 Identities=17% Similarity=0.285 Sum_probs=178.5
Q ss_pred HhcCCcEEEEEeCCEEEEEEeeccccc-ccccCccccEEEecCcEEEEEeccHHHHHHHHHHHHHHHHHhhhhcCCCCCH
Q 027555 27 VRKGNAAVGVRGTDTIVLGVEKKSTVK-LQDSRSVRKIVSLDNHIALACAGLKADARVLINRARIECQSHRLTVEDPVTV 105 (222)
Q Consensus 27 ~~~G~t~igi~~~dgVvla~d~~~~~~-l~~~~~~~Ki~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~i~~ 105 (222)
..+|+|+|||++.|++|+|+|+|.++. .+.++...|||+++|+++++.||+++|+..|...++..++.|+.+++..|++
T Consensus 26 ~~NGGT~vaIaG~dFavvA~DTR~s~gy~I~sR~~~Ki~~l~D~~vl~~sGF~aD~l~L~k~i~~r~~~Y~~~h~k~ms~ 105 (235)
T KOG0179|consen 26 EDNGGTTVAIAGEDFAVVAGDTRMSSGYNINSRDQSKIFKLGDNIVLGSSGFYADTLALVKVIKSRIKQYEHDHNKKMSI 105 (235)
T ss_pred ccCCceEEEEcCCceEEEecccccccceeeeccccchheeccCceEEecccchhhHHHHHHHHHHHHHHHhhcccccccH
Confidence 369999999999999999999999985 5778999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhhcccCCCccceeeeEEEEEeCCCCccEEEEECCCCceecccEEEecCChHHHHHHHHhhcC------
Q 027555 106 EYITRYIAGLQQKYTQSGGVRPFGLSTLIVGFDPYTGVPSLYQTDPSGTFSAWKANATGRNSNSMREFLEKNYK------ 179 (222)
Q Consensus 106 ~~la~~ls~~~~~~~~~~~~rP~~v~~ivaG~d~~~~gp~ly~iD~~G~~~~~~~~a~G~g~~~~~~~Le~~~~------ 179 (222)
..+|.+|+.+++ ..+++||++..||||+|+ ++++.+|+.||.|++.+..|.|.|+++.+++|+|+....
T Consensus 106 ~s~A~lls~~LY----~kRFFPYYv~~ilaGiDe-eGKG~VySyDPvGsyer~~~~AgGsa~~mI~PfLDnQi~~kn~~~ 180 (235)
T KOG0179|consen 106 HSAAQLLSTILY----SKRFFPYYVFNILAGIDE-EGKGAVYSYDPVGSYERVTCRAGGSAASMIQPFLDNQIGHKNQNL 180 (235)
T ss_pred HHHHHHHHHHHh----hcccccceeeeeeecccc-cCceeEEeecCCcceeeeeeecCCcchhhhhhhhhhhccCcCccc
Confidence 999999999997 357899999999999998 899999999999999999999999999999999996332
Q ss_pred -----CCCh-HHHHHHHHHHHHHHhhcC---CCceEEEEEecCceEEeeec
Q 027555 180 -----ETSG-QETIKLAIRALLEVCSFL---YFRMSLGMVITKYYEHLYYS 221 (222)
Q Consensus 180 -----~~ls-~ea~~l~~~~l~~~~~~d---~~~~~v~~v~~~~~~~~~~~ 221 (222)
+.|| |+|++|+.++|..|.+|| .++++|.|+.+++++.+++.
T Consensus 181 e~~~~~~Ls~e~ai~lv~d~F~SAaERdI~tGD~l~i~I~tk~gV~~e~~~ 231 (235)
T KOG0179|consen 181 ENAERTPLSLERAIRLVKDAFTSAAERDIYTGDKLEICIITKDGVEVETLP 231 (235)
T ss_pred ccCcccccCHHHHHHHHHHHhhhhhhcccccCCcEEEEEEecCCEEEEeee
Confidence 3589 999999999999999999 78999999999999999874
No 39
>KOG0174 consensus 20S proteasome, regulatory subunit beta type PSMB6/PSMB9/PRE3 [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1.5e-35 Score=231.18 Aligned_cols=189 Identities=15% Similarity=0.233 Sum_probs=174.8
Q ss_pred HHhcCCcEEEEEeCCEEEEEEeeccccc-ccccCccccEEEecCcEEEEEeccHHHHHHHHHHHHHHHHHhhhhcCCCCC
Q 027555 26 AVRKGNAAVGVRGTDTIVLGVEKKSTVK-LQDSRSVRKIVSLDNHIALACAGLKADARVLINRARIECQSHRLTVEDPVT 104 (222)
Q Consensus 26 a~~~G~t~igi~~~dgVvla~d~~~~~~-l~~~~~~~Ki~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~i~ 104 (222)
.+..|+|++|+++++||||++|+|++.. ++.++-.+|+.+|+|+|+||.||.++|.|.+.+.++..+..|..+++.+++
T Consensus 15 evstGTTImAv~y~gGVvlGaDSRTs~GayvanRvtDKlT~itD~i~cCRSGSAADtQaiaD~~~Y~L~~~~~q~~~~p~ 94 (224)
T KOG0174|consen 15 EVSTGTTIMAVEYDGGVVLGADSRTSTGAYVANRVTDKLTPITDNIYCCRSGSAADTQAIADIVRYHLELYTIQENKPPL 94 (224)
T ss_pred ccccCceEEEEEEcCcEEEeccCCccchHHHHhhhcccceeccccEEEecCCchhhHHHHHHHHHHHHHHhhhhcCCCch
Confidence 4789999999999999999999999984 778889999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhhcccCCCccceeeeEEEEEeCCCCccEEEEECCCCceecccEEEecCChHHHHHHHHhhcCCCCh-
Q 027555 105 VEYITRYIAGLQQKYTQSGGVRPFGLSTLIVGFDPYTGVPSLYQTDPSGTFSAWKANATGRNSNSMREFLEKNYKETSG- 183 (222)
Q Consensus 105 ~~~la~~ls~~~~~~~~~~~~rP~~v~~ivaG~d~~~~gp~ly~iD~~G~~~~~~~~a~G~g~~~~~~~Le~~~~~~ls- 183 (222)
+...|+.+++++|+|.. -+...+||||||+ +.|.++|.+---|...+-+++.-|+|+.+++++++.+|||+|+
T Consensus 95 v~~aA~l~r~~~Y~~re-----~L~AgliVAGwD~-~~gGqVY~iplGG~l~rq~~aIgGSGStfIYGf~D~~~r~nMt~ 168 (224)
T KOG0174|consen 95 VHTAASLFREICYNYRE-----MLSAGLIVAGWDE-KEGGQVYSIPLGGSLTRQPFAIGGSGSTFIYGFCDANWRPNMTL 168 (224)
T ss_pred HHHHHHHHHHHHHhCHH-----hhhcceEEeeccc-ccCceEEEeecCceEeecceeeccCCceeeeeeehhhcCCCCCH
Confidence 99999999999998753 3889999999998 8899999998888888889999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHhhcCC---CceEEEEEecCceEEeee
Q 027555 184 QETIKLAIRALLEVCSFLY---FRMSLGMVITKYYEHLYY 220 (222)
Q Consensus 184 ~ea~~l~~~~l~~~~~~d~---~~~~v~~v~~~~~~~~~~ 220 (222)
||++.+..+|+..+++||. --+-+.++.+.|+++.+|
T Consensus 169 EE~~~fvk~Av~lAi~rDGsSGGviR~~~I~~~Gver~~~ 208 (224)
T KOG0174|consen 169 EECVRFVKNAVSLAIERDGSSGGVIRLVIINKAGVERRFF 208 (224)
T ss_pred HHHHHHHHHHHHHHHhccCCCCCEEEEEEEccCCceEEEe
Confidence 9999999999999999993 356667778899998876
No 40
>KOG0175 consensus 20S proteasome, regulatory subunit beta type PSMB5/PSMB8/PRE2 [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=5.6e-35 Score=236.74 Aligned_cols=186 Identities=20% Similarity=0.308 Sum_probs=176.2
Q ss_pred HhcCCcEEEEEeCCEEEEEEeecccc-cccccCccccEEEecCcEEEEEeccHHHHHHHHHHHHHHHHHhhhhcCCCCCH
Q 027555 27 VRKGNAAVGVRGTDTIVLGVEKKSTV-KLQDSRSVRKIVSLDNHIALACAGLKADARVLINRARIECQSHRLTVEDPVTV 105 (222)
Q Consensus 27 ~~~G~t~igi~~~dgVvla~d~~~~~-~l~~~~~~~Ki~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~i~~ 105 (222)
..+|+|++|++++.|||+|+|+|.++ +++.+...+||.+|+++..-+.+|-++||+.+-+.+.++|++|++++++.|++
T Consensus 68 ~~hGTTTLAF~f~~GvivAvDSRAs~G~YIasqtv~KVIeIn~ylLGTmAGgAADCqfWer~L~kecRL~eLRnkeriSV 147 (285)
T KOG0175|consen 68 FAHGTTTLAFKFKGGVIVAVDSRASAGSYIASQTVKKVIEINPYLLGTMAGGAADCQFWERVLAKECRLHELRNKERISV 147 (285)
T ss_pred ecCCceEEEEEecCcEEEEEeccccccceeechhhceeeeechhhhhcccCcchhhHHHHHHHHHHHHHHHHhcCcceeh
Confidence 45899999999999999999999999 58888899999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhhcccCCCccceeeeEEEEEeCCCCccEEEEECCCCceecccEEEecCChHHHHHHHHhhcCCCCh-H
Q 027555 106 EYITRYIAGLQQKYTQSGGVRPFGLSTLIVGFDPYTGVPSLYQTDPSGTFSAWKANATGRNSNSMREFLEKNYKETSG-Q 184 (222)
Q Consensus 106 ~~la~~ls~~~~~~~~~~~~rP~~v~~ivaG~d~~~~gp~ly~iD~~G~~~~~~~~a~G~g~~~~~~~Le~~~~~~ls-~ 184 (222)
...++.|++.+++|.-.+ +.+..+||||| +.||.||.||..|+-...+-+++|+|+.+++++|+..|+++|| +
T Consensus 148 saASKllsN~~y~YkGmG----LsmGtMi~G~D--k~GP~lyYVDseG~Rl~G~~FSVGSGs~yAYGVLDsgYr~dls~e 221 (285)
T KOG0175|consen 148 SAASKLLSNMVYQYKGMG----LSMGTMIAGWD--KKGPGLYYVDSEGTRLSGDLFSVGSGSTYAYGVLDSGYRYDLSDE 221 (285)
T ss_pred HHHHHHHHHHHhhccCcc----hhheeeEeecc--CCCCceEEEcCCCCEecCceEeecCCCceeEEeeccCCCCCCCHH
Confidence 999999999999886443 88999999999 6899999999999999999999999999999999999999999 9
Q ss_pred HHHHHHHHHHHHHhhcC---CCceEEEEEecCceEEe
Q 027555 185 ETIKLAIRALLEVCSFL---YFRMSLGMVITKYYEHL 218 (222)
Q Consensus 185 ea~~l~~~~l~~~~~~d---~~~~~v~~v~~~~~~~~ 218 (222)
||.+|+++|+..|..|| +--+.+..|..+||.+.
T Consensus 222 EA~~L~rrAI~hAThRDaySGG~vnlyHv~edGW~~v 258 (285)
T KOG0175|consen 222 EAYDLARRAIYHATHRDAYSGGVVNLYHVKEDGWVKV 258 (285)
T ss_pred HHHHHHHHHHHHHHhcccccCceEEEEEECCccceec
Confidence 99999999999999999 45788999999999874
No 41
>KOG0185 consensus 20S proteasome, regulatory subunit beta type PSMB4/PRE4 [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1.2e-34 Score=232.13 Aligned_cols=207 Identities=17% Similarity=0.208 Sum_probs=183.4
Q ss_pred CeeeCCCCccchh------hhHHHHHhcCCcEEEEEeCCEEEEEEeecccc-cccccCccccEEEecCcEEEEEeccHHH
Q 027555 8 ITVFSPDGHLFQV------EYALEAVRKGNAAVGVRGTDTIVLGVEKKSTV-KLQDSRSVRKIVSLDNHIALACAGLKAD 80 (222)
Q Consensus 8 ~~~fsp~G~l~q~------eya~~a~~~G~t~igi~~~dgVvla~d~~~~~-~l~~~~~~~Ki~~i~~~i~~~~sG~~~D 80 (222)
+++|.|.|...-. ..-+.++-+|+++||+|++||||||+|+..++ ++...++.+++|+++||+.+++||..+|
T Consensus 13 ~~~f~~~~~~m~~a~~~~~qrt~~p~vTGTSVla~ky~~GVviaaD~lgSYGslaR~~nVeRi~kVgdntllG~sGdisD 92 (256)
T KOG0185|consen 13 PGTFYPSGSLMENAGDYPIQRTLNPIVTGTSVLALKYKDGVVIAADTLGSYGSLARYKNVERIFKVGDNTLLGASGDISD 92 (256)
T ss_pred CCcCcCccchhhhccCCCcccccCceeccceEEEEEecCceEEEecccccchhhhhhcCceeeEEecCceEEecCccHHH
Confidence 5678888643221 12234445899999999999999999999998 5888899999999999999999999999
Q ss_pred HHHHHHHHHHHHHHh-hhhcCCCCCHHHHHHHHHHHHHhhcccCCCccceeeeEEEEEeCCCCccEEEEECCCCceeccc
Q 027555 81 ARVLINRARIECQSH-RLTVEDPVTVEYITRYIAGLQQKYTQSGGVRPFGLSTLIVGFDPYTGVPSLYQTDPSGTFSAWK 159 (222)
Q Consensus 81 ~~~l~~~~~~~~~~~-~~~~~~~i~~~~la~~ls~~~~~~~~~~~~rP~~v~~ivaG~d~~~~gp~ly~iD~~G~~~~~~ 159 (222)
.|.+.+.|.+...+. .+..|..+.|+.++++|.++++ .+++++.|++..++|||+|. ++.|.|-.+|..|...+.+
T Consensus 93 ~Q~i~r~L~~l~iedn~~~Dg~~l~Pk~ih~yltrvlY--~rRsKmnPlwntlvVgGv~~-~g~~~lg~V~~~G~~Y~~~ 169 (256)
T KOG0185|consen 93 FQYIQRVLEQLVIEDNRLDDGQSLGPKAIHSYLTRVLY--ARRSKMNPLWNTLVVGGVDN-TGEPFLGYVDLLGVAYESP 169 (256)
T ss_pred HHHHHHHHHHHHhcccccccccccChHHHHHHHHHHHH--HhhhccCchhhheeEeeecC-CCCeeEEEEeeccccccCc
Confidence 999999998877664 4666799999999999999996 46788999999999999996 7899999999999999999
Q ss_pred EEEecCChHHHHHHHHhhcC---CCCh-HHHHHHHHHHHHHHhhcC---CCceEEEEEecCceEE
Q 027555 160 ANATGRNSNSMREFLEKNYK---ETSG-QETIKLAIRALLEVCSFL---YFRMSLGMVITKYYEH 217 (222)
Q Consensus 160 ~~a~G~g~~~~~~~Le~~~~---~~ls-~ea~~l~~~~l~~~~~~d---~~~~~v~~v~~~~~~~ 217 (222)
..|+|.|+.++.++|++.|. ++++ +||.+++.+||+...+|| .++++|+.|+.+|+.-
T Consensus 170 ~vATGfg~hLa~P~lR~~~~~k~~~~s~eeA~~li~~cMrVL~YRD~ra~n~fqva~v~~eGv~i 234 (256)
T KOG0185|consen 170 VVATGFGAHLALPLLRDEWEKKGEDLSREEAEALIEKCMRVLYYRDARASNEFQVATVDEEGVTI 234 (256)
T ss_pred hhhhhhHHHhhhHHHHHhhhccchhhHHHHHHHHHHHHHHHHhccccccccceEEEEEcccceEe
Confidence 99999999999999999997 5788 999999999999999998 6899999999998763
No 42
>KOG0173 consensus 20S proteasome, regulatory subunit beta type PSMB7/PSMB10/PUP1 [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1.1e-33 Score=228.65 Aligned_cols=187 Identities=24% Similarity=0.284 Sum_probs=173.9
Q ss_pred HHHHHhcCCcEEEEEeCCEEEEEEeecccc-cccccCccccEEEecCcEEEEEeccHHHHHHHHHHHHHHHHHhhhhcCC
Q 027555 23 ALEAVRKGNAAVGVRGTDTIVLGVEKKSTV-KLQDSRSVRKIVSLDNHIALACAGLKADARVLINRARIECQSHRLTVED 101 (222)
Q Consensus 23 a~~a~~~G~t~igi~~~dgVvla~d~~~~~-~l~~~~~~~Ki~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~ 101 (222)
+.++.+.|+|++|+.++||||+++|+|.+. .++..++.+||+.|.++|+||.+|.++|...+-+.+.++..+|+++.++
T Consensus 30 ~p~~tkTGTtIvgv~~k~gvIlgADtRaT~G~IvaDKnC~KIH~ia~~IyccGAGtAADte~vt~m~ss~l~Lh~l~t~R 109 (271)
T KOG0173|consen 30 APKATKTGTTIVGVIFKDGVILGADTRATEGPIVADKNCEKIHFIAPNIYCCGAGTAADTEMVTRMISSNLELHRLNTGR 109 (271)
T ss_pred CCcccccCcEEEEEEeCCeEEEeecccccCCCeeecchhHHHhhcccceEEccCCchhhHHHHHHHHHHHHHHHHhccCC
Confidence 345667899999999999999999999998 4777889999999999999999999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHHhhcccCCCccceeeeEEEEEeCCCCccEEEEECCCCceecccEEEecCChHHHHHHHHhhcCCC
Q 027555 102 PVTVEYITRYIAGLQQKYTQSGGVRPFGLSTLIVGFDPYTGVPSLYQTDPSGTFSAWKANATGRNSNSMREFLEKNYKET 181 (222)
Q Consensus 102 ~i~~~~la~~ls~~~~~~~~~~~~rP~~v~~ivaG~d~~~~gp~ly~iD~~G~~~~~~~~a~G~g~~~~~~~Le~~~~~~ 181 (222)
++.+-..-+++.+.+..|.- -.++.+||+|+| ..|||||.+-|.|+....+|.+.|+|+..++++||.+|+|+
T Consensus 110 ~~rVv~A~~mlkQ~LFrYqG-----~IgA~LiiGGvD--~TGpHLy~i~phGStd~~Pf~alGSGslaAmsvlEsr~k~d 182 (271)
T KOG0173|consen 110 KPRVVTALRMLKQHLFRYQG-----HIGAALILGGVD--PTGPHLYSIHPHGSTDKLPFTALGSGSLAAMSVLESRWKPD 182 (271)
T ss_pred CCceeeHHHHHHHHHHHhcC-----cccceeEEcccc--CCCCceEEEcCCCCcCccceeeeccchHHHHHHHHHhcCcc
Confidence 99999999999999987753 489999999999 58999999999999999999999999999999999999999
Q ss_pred Ch-HHHHHHHHHHHHHHhhcC---CCceEEEEEecCceE
Q 027555 182 SG-QETIKLAIRALLEVCSFL---YFRMSLGMVITKYYE 216 (222)
Q Consensus 182 ls-~ea~~l~~~~l~~~~~~d---~~~~~v~~v~~~~~~ 216 (222)
|+ |||++|+.+|+...+.+| +.|++++||+.++.+
T Consensus 183 lt~eea~~Lv~eAi~AGi~nDLgSGsnvdlcVI~~~~~~ 221 (271)
T KOG0173|consen 183 LTKEEAIKLVCEAIAAGIFNDLGSGSNVDLCVITKKGVE 221 (271)
T ss_pred cCHHHHHHHHHHHHHhhhccccCCCCceeEEEEeCCCcc
Confidence 99 999999999999999998 689999988855543
No 43
>KOG0180 consensus 20S proteasome, regulatory subunit beta type PSMB3/PUP3 [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=4e-32 Score=208.46 Aligned_cols=188 Identities=18% Similarity=0.248 Sum_probs=173.6
Q ss_pred hcCCcEEEEEeCCEEEEEEeeccccc-ccccCccccEEEecCcEEEEEeccHHHHHHHHHHHHHHHHHhhhhcCCCCCHH
Q 027555 28 RKGNAAVGVRGTDTIVLGVEKKSTVK-LQDSRSVRKIVSLDNHIALACAGLKADARVLINRARIECQSHRLTVEDPVTVE 106 (222)
Q Consensus 28 ~~G~t~igi~~~dgVvla~d~~~~~~-l~~~~~~~Ki~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~i~~~ 106 (222)
-+|+++||++++|||.||+|.|.... ....++.+|||+|+|+++++.+|++.|++.+.++++...++|+++.+++|.|+
T Consensus 6 ynGg~vvAM~gk~cvaIa~D~RlG~q~~tistdf~ki~~igdr~y~GL~glatDvqtl~~~~~fr~nLy~lre~R~i~P~ 85 (204)
T KOG0180|consen 6 YNGGSVVAMAGKNCVAIASDLRLGVQSQTISTDFQKIFKIGDRLYLGLTGLATDVQTLLERLRFRKNLYELREEREIKPE 85 (204)
T ss_pred ecCceEEEEeCCceEEEEeccccceeeeeeeccchhheecCCeeEEeccccchhHHHHHHHHHHHHhHHHhhhhcccCcH
Confidence 48999999999999999999999874 44567899999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhhcccCCCccceeeeEEEEEeCCCCccEEEEECCCCceec-ccEEEecCChHHHHHHHHhhcCCCCh-H
Q 027555 107 YITRYIAGLQQKYTQSGGVRPFGLSTLIVGFDPYTGVPSLYQTDPSGTFSA-WKANATGRNSNSMREFLEKNYKETSG-Q 184 (222)
Q Consensus 107 ~la~~ls~~~~~~~~~~~~rP~~v~~ivaG~d~~~~gp~ly~iD~~G~~~~-~~~~a~G~g~~~~~~~Le~~~~~~ls-~ 184 (222)
.+++++|.++|+. ++-||.+..+|||+|+ +++|.|+..|..|.... .+++++|.++...++++|..|+|+|. +
T Consensus 86 ~~s~mvS~~lYek----RfgpYf~~PvVAGl~~-~~kPfIc~mD~IGc~~~~~DFVvsGTa~e~L~GmCE~ly~pnmepd 160 (204)
T KOG0180|consen 86 TFSSMVSSLLYEK----RFGPYFTEPVVAGLDD-DNKPFICGMDLIGCIDAPKDFVVSGTASEQLYGMCEALYEPNMEPD 160 (204)
T ss_pred HHHHHHHHHHHHh----hcCCcccceeEeccCC-CCCeeEeecccccCcCccCCeEEecchHHHHHHHHHHhcCCCCCHH
Confidence 9999999999863 5779999999999998 89999999999999975 69999999999999999999999999 9
Q ss_pred HHHHHHHHHHHHHhhcC---CCceEEEEEecCceEEeee
Q 027555 185 ETIKLAIRALLEVCSFL---YFRMSLGMVITKYYEHLYY 220 (222)
Q Consensus 185 ea~~l~~~~l~~~~~~d---~~~~~v~~v~~~~~~~~~~ 220 (222)
|+.+.+.+||.++.+|| +=.-.|.+|.++.+.+-++
T Consensus 161 ~LFetisQa~Lna~DRDalSGwGa~vyiI~kdkv~~r~l 199 (204)
T KOG0180|consen 161 ELFETISQALLNAVDRDALSGWGAVVYIITKDKVTKRTL 199 (204)
T ss_pred HHHHHHHHHHHhHhhhhhhccCCeEEEEEccchhhhhhh
Confidence 99999999999999999 4577888888877766443
No 44
>PRK05456 ATP-dependent protease subunit HslV; Provisional
Probab=99.98 E-value=5.5e-31 Score=209.02 Aligned_cols=161 Identities=15% Similarity=0.157 Sum_probs=138.0
Q ss_pred CCcEEEEEeCCEEEEEEeeccccc-ccccCccccEEEe-cCcEEEEEeccHHHHHHHHHHHHHHHHHhhhhcCCCCCHHH
Q 027555 30 GNAAVGVRGTDTIVLGVEKKSTVK-LQDSRSVRKIVSL-DNHIALACAGLKADARVLINRARIECQSHRLTVEDPVTVEY 107 (222)
Q Consensus 30 G~t~igi~~~dgVvla~d~~~~~~-l~~~~~~~Ki~~i-~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~i~~~~ 107 (222)
|+|+|||+++||||||+|+|.+.+ ++.+++.+||++| +++++|++||..+|++.|.+.++.+++.|+... ++.
T Consensus 1 gtTivgi~~~dgVvlaaD~r~s~g~~v~~~~~~KI~~i~~d~i~~~~aG~~aD~q~l~~~l~~~~~~y~~~~-----~~~ 75 (172)
T PRK05456 1 GTTILAVRRNGKVAIAGDGQVTLGNTVMKGNARKVRRLYNGKVLAGFAGSTADAFTLFERFEAKLEEHQGNL-----LRA 75 (172)
T ss_pred CcEEEEEEECCEEEEEECCceEeCcEEEcCCCceEEEeCCCCEEEEEeccHHHHHHHHHHHHHHHHHccCcc-----HHH
Confidence 689999999999999999999884 7778899999999 999999999999999999999999999998322 466
Q ss_pred HHHHHHHHHHhhcccCCCccceeeeEEEEEeCCCCccEEEEECCCCceecc--cEEEecCChHHHHHHHHhhcC-CCChH
Q 027555 108 ITRYIAGLQQKYTQSGGVRPFGLSTLIVGFDPYTGVPSLYQTDPSGTFSAW--KANATGRNSNSMREFLEKNYK-ETSGQ 184 (222)
Q Consensus 108 la~~ls~~~~~~~~~~~~rP~~v~~ivaG~d~~~~gp~ly~iD~~G~~~~~--~~~a~G~g~~~~~~~Le~~~~-~~ls~ 184 (222)
.|+.+..+.. ....+|+.+++|++ |+ |+||.+|+.|+..+. +++++|+|+.++.++||++|+ |+|
T Consensus 76 ~a~l~~~l~~----~~~~~~l~~~~lv~--d~----~~ly~id~~G~~~~~~~~~~a~GSGs~~a~g~ld~~y~~~~m-- 143 (172)
T PRK05456 76 AVELAKDWRT----DRYLRRLEAMLIVA--DK----EHSLIISGNGDVIEPEDGIIAIGSGGNYALAAARALLENTDL-- 143 (172)
T ss_pred HHHHHHHHHh----ccCCCccEEEEEEE--cC----CcEEEECCCCcEeccCCCeEEEecCHHHHHHHHHHhhhcCCC--
Confidence 6655543321 12236888999994 52 699999999999766 899999999999999999999 999
Q ss_pred HHHHHHHHHHHHHhhcC---CCceEE
Q 027555 185 ETIKLAIRALLEVCSFL---YFRMSL 207 (222)
Q Consensus 185 ea~~l~~~~l~~~~~~d---~~~~~v 207 (222)
||++++++|++.+.+|| ..++.|
T Consensus 144 eA~~la~kai~~A~~Rd~~sg~~i~v 169 (172)
T PRK05456 144 SAEEIAEKALKIAADICIYTNHNITI 169 (172)
T ss_pred CHHHHHHHHHHHHHHhCeeCCCcEEE
Confidence 99999999999999998 445544
No 45
>cd01901 Ntn_hydrolase The Ntn hydrolases (N-terminal nucleophile) are a diverse superfamily of of enzymes that are activated autocatalytically via an N-terminally lcated nucleophilic amino acid. N-terminal nucleophile (NTN-) hydrolase superfamily, which contains a four-layered alpha, beta, beta, alpha core structure. This family of hydrolases includes penicillin acylase, the 20S proteasome alpha and beta subunits, and glutamate synthase. The mechanism of activation of these proteins is conserved, although they differ in their substrate specificities. All known members catalyze the hydrolysis of amide bonds in either proteins or small molecules, and each one of them is synthesized as a preprotein. For each, an autocatalytic endoproteolytic process generates a new N-terminal residue. This mature N-terminal residue is central to catalysis and acts as both a polarizing base and a nucleophile during the reaction. The N-terminal amino group acts as the proton acceptor and activates either t
Probab=99.97 E-value=7.4e-30 Score=198.79 Aligned_cols=160 Identities=37% Similarity=0.529 Sum_probs=152.4
Q ss_pred CcEEEEEeCCEEEEEEeecccccccc-cCccccEEEecCcEEEEEeccHHHHHHHHHHHHHHHHHhhhhcCCCCCHHHHH
Q 027555 31 NAAVGVRGTDTIVLGVEKKSTVKLQD-SRSVRKIVSLDNHIALACAGLKADARVLINRARIECQSHRLTVEDPVTVEYIT 109 (222)
Q Consensus 31 ~t~igi~~~dgVvla~d~~~~~~l~~-~~~~~Ki~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~i~~~~la 109 (222)
+|+|||+++||||+|+|++.+.++.. .....|++.++++++++++|..+|++.+.++++.++..|++.++.++++..++
T Consensus 1 ~t~i~i~~~~gvila~d~~~~~~~~~~~~~~~ki~~~~~~~~~~~sG~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (164)
T cd01901 1 STSVAIKGKGGVVLAADKRLSSGLPVAGSPVIKIGKNEDGIAWGLAGLAADAQTLVRRLREALQLYRLRYGEPISVVALA 80 (164)
T ss_pred CcEEEEEeCCEEEEEEecccCccCeecCCCcceEEEecCCeEEEEecChHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHH
Confidence 58999999999999999999886544 67899999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhhcccCCCccceeeeEEEEEeCCCCccEEEEECCCCceecc-cEEEecCChHHHHHHHHhhcCCCCh-HHHH
Q 027555 110 RYIAGLQQKYTQSGGVRPFGLSTLIVGFDPYTGVPSLYQTDPSGTFSAW-KANATGRNSNSMREFLEKNYKETSG-QETI 187 (222)
Q Consensus 110 ~~ls~~~~~~~~~~~~rP~~v~~ivaG~d~~~~gp~ly~iD~~G~~~~~-~~~a~G~g~~~~~~~Le~~~~~~ls-~ea~ 187 (222)
+.+++.++.+++ .||+++++|+||+|+ ++|+||.+||.|+..+. .++++|.++..+.++|++.|+++++ +|++
T Consensus 81 ~~~~~~~~~~~~---~~p~~~~~iiag~~~--~~~~l~~id~~g~~~~~~~~~~~G~~~~~~~~~l~~~~~~~~~~~~~~ 155 (164)
T cd01901 81 KELAKLLQVYTQ---GRPFGVNLIVAGVDE--GGGNLYYIDPSGPVIENPGAVATGSRSQRAKSLLEKLYKPDMTLEEAV 155 (164)
T ss_pred HHHHHHHHHhcC---CCCcceEEEEEEEcC--CCCEEEEECCCcCEeecCcEEEECCCCHHHHHHHHHHhcCCCCHHHHH
Confidence 999999999886 799999999999994 78999999999999999 9999999999999999999999999 9999
Q ss_pred HHHHHHHH
Q 027555 188 KLAIRALL 195 (222)
Q Consensus 188 ~l~~~~l~ 195 (222)
+++.+||+
T Consensus 156 ~~~~~~l~ 163 (164)
T cd01901 156 ELALKALK 163 (164)
T ss_pred HHHHHHHh
Confidence 99999986
No 46
>cd01913 protease_HslV Protease HslV and the ATPase/chaperone HslU are part of an ATP-dependent proteolytic system that is the prokaryotic homolog of the proteasome. HslV is a dimer of hexamers (a dodecamer) that forms a central proteolytic chamber with active sites on the interior walls of the cavity. HslV shares significant sequence and structural similarity with the proteasomal beta-subunit and both are members of the Ntn-family of hydrolases. HslV has a nucleophilic threonine residue at its N-terminus that is exposed after processing of the propeptide and is directly involved in active site catalysis.
Probab=99.97 E-value=8.5e-30 Score=201.05 Aligned_cols=160 Identities=14% Similarity=0.072 Sum_probs=134.5
Q ss_pred CcEEEEEeCCEEEEEEeeccccc-ccccCccccEEEecC-cEEEEEeccHHHHHHHHHHHHHHHHHhhhhcCCCCCHHHH
Q 027555 31 NAAVGVRGTDTIVLGVEKKSTVK-LQDSRSVRKIVSLDN-HIALACAGLKADARVLINRARIECQSHRLTVEDPVTVEYI 108 (222)
Q Consensus 31 ~t~igi~~~dgVvla~d~~~~~~-l~~~~~~~Ki~~i~~-~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~i~~~~l 108 (222)
+|+|||+++||||||+|+|.+.+ ++.+++.+||++|+| |++|+++|..+|++.|.++++.++++|+.+.++ .+
T Consensus 1 tTivgi~~~dgVvlaaD~r~t~G~~v~~~~~~Ki~~i~d~~i~~~~aG~~aD~~~l~~~~~~~~~~y~~~~~~-----~a 75 (171)
T cd01913 1 TTILAVRKNGKVVIAGDGQVTLGNTVMKGNARKVRRLYNGKVIAGFAGSTADAFTLFERFEAKLEQYPGNLLR-----AA 75 (171)
T ss_pred CeEEEEEECCEEEEEECCceEeccEEEcCCcceEEEeCCCCEEEEecccHHHHHHHHHHHHHHHHHhhchHHH-----HH
Confidence 58999999999999999999884 778889999999999 999999999999999999999999999988774 44
Q ss_pred HHHHHHHHHhhcccCCCccce-eeeEEEEEeCCCCccEEEEECCCCceecc--cEEEecCChHHHHHHHHhhcCCC-ChH
Q 027555 109 TRYIAGLQQKYTQSGGVRPFG-LSTLIVGFDPYTGVPSLYQTDPSGTFSAW--KANATGRNSNSMREFLEKNYKET-SGQ 184 (222)
Q Consensus 109 a~~ls~~~~~~~~~~~~rP~~-v~~ivaG~d~~~~gp~ly~iD~~G~~~~~--~~~a~G~g~~~~~~~Le~~~~~~-ls~ 184 (222)
++.+..++. + +.+|+. +.++++++ ++||.+||.|...+. ++.++|+|+++++++||.+|+++ ||
T Consensus 76 a~l~~~l~~-~----~~~~~l~a~~iv~~~------~~ly~id~~G~~ie~~~~~~a~GSGS~ya~g~ld~~yk~~~ms- 143 (171)
T cd01913 76 VELAKDWRT-D----RYLRRLEAMLIVADK------EHTLLISGNGDVIEPDDGIAAIGSGGNYALAAARALLDHTDLS- 143 (171)
T ss_pred HHHHHHHHh-c----cCcCceEEEEEEeCC------CcEEEECCCCCEeccCCCeEEEeCCHHHHHHHHHHhhccCCCC-
Confidence 554444321 1 335555 66666543 389999999999998 49999999999999999999995 98
Q ss_pred HHHHHHHHHHHHHhhcC---CCceEEE
Q 027555 185 ETIKLAIRALLEVCSFL---YFRMSLG 208 (222)
Q Consensus 185 ea~~l~~~~l~~~~~~d---~~~~~v~ 208 (222)
+.+++.+|++.|++|| ..++.|-
T Consensus 144 -~~~la~~Av~~A~~rd~~tg~~i~~~ 169 (171)
T cd01913 144 -AEEIARKALKIAADICIYTNHNITVE 169 (171)
T ss_pred -HHHHHHHHHHHHHhhCcccCCCEEEE
Confidence 4499999999999999 4566543
No 47
>TIGR03692 ATP_dep_HslV ATP-dependent protease HslVU, peptidase subunit. The ATP-dependent protease HslVU, a complex of hexameric HslU active as a protein-unfolding ATPase and dodecameric HslV, the catalytic threonine protease.
Probab=99.97 E-value=3e-29 Score=197.95 Aligned_cols=160 Identities=14% Similarity=0.124 Sum_probs=132.6
Q ss_pred CcEEEEEeCCEEEEEEeeccccc-ccccCccccEEEe-cCcEEEEEeccHHHHHHHHHHHHHHHHHhhhhcCCCCCHHHH
Q 027555 31 NAAVGVRGTDTIVLGVEKKSTVK-LQDSRSVRKIVSL-DNHIALACAGLKADARVLINRARIECQSHRLTVEDPVTVEYI 108 (222)
Q Consensus 31 ~t~igi~~~dgVvla~d~~~~~~-l~~~~~~~Ki~~i-~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~i~~~~l 108 (222)
+|+|||+++||||||+|+|.+.+ ++.+++.+||++| +|+++|+++|..+|++.|.++++.+++.|+++. .+.+
T Consensus 1 tTivgi~~~dgVvlaaD~r~s~g~~v~~~~~~Ki~~i~~d~i~~~~aG~~aD~q~l~~~~~~~~~~y~~~~-----~~~~ 75 (171)
T TIGR03692 1 TTILAVRRNGKVVIAGDGQVTLGNTVMKGNARKVRRLYNGKVLAGFAGSTADAFTLFERFEAKLEEYQGNL-----TRAA 75 (171)
T ss_pred CeEEEEEECCEEEEEECCceEeceEEEcCCCCeEEEeCCCCEEEEecchHHHHHHHHHHHHHHHHHccCch-----HHHH
Confidence 68999999999999999999884 7778899999999 599999999999999999999999999998753 3556
Q ss_pred HHHHHHHHHhhcccCCCccceeeeEEEEEeCCCCccEEEEECCCCceecc--cEEEecCChHHHHHHHHhhcC-CCChHH
Q 027555 109 TRYIAGLQQKYTQSGGVRPFGLSTLIVGFDPYTGVPSLYQTDPSGTFSAW--KANATGRNSNSMREFLEKNYK-ETSGQE 185 (222)
Q Consensus 109 a~~ls~~~~~~~~~~~~rP~~v~~ivaG~d~~~~gp~ly~iD~~G~~~~~--~~~a~G~g~~~~~~~Le~~~~-~~ls~e 185 (222)
|+.++++. .+...+.+.+.+|++|| ++||.+||.|...+. +++++|+|+++++++||.+|+ ++| +
T Consensus 76 a~l~~~~~----~~~~~~~l~a~~iv~~~------~~ly~i~~~G~~ie~~~~~~a~GSGS~~a~g~ld~~y~~~~~--s 143 (171)
T TIGR03692 76 VELAKDWR----TDRYLRRLEAMLIVADK------ETSLLISGTGDVIEPEDGIAAIGSGGNYALAAARALLRNTDL--S 143 (171)
T ss_pred HHHHHHHh----hcccccccEEEEEEEcC------CCEEEEcCCCcEeccCCCeEEEeCCHHHHHHHHHHhhhcCCC--C
Confidence 66655531 11112234477777644 389999999999996 699999999999999999995 555 4
Q ss_pred HHHHHHHHHHHHhhcC---CCceEE
Q 027555 186 TIKLAIRALLEVCSFL---YFRMSL 207 (222)
Q Consensus 186 a~~l~~~~l~~~~~~d---~~~~~v 207 (222)
|++++.+|++.|++|| ..++.|
T Consensus 144 a~~la~~Av~~A~~rd~~sg~~i~v 168 (171)
T TIGR03692 144 AEEIAREALKIAADICIYTNHNITI 168 (171)
T ss_pred HHHHHHHHHHHHHhhCccCCCCEEE
Confidence 9999999999999999 455554
No 48
>PF10584 Proteasome_A_N: Proteasome subunit A N-terminal signature; InterPro: IPR000426 The proteasome (or macropain) (3.4.25.1 from EC) [, , , , ] is a eukaryotic and archaeal multicatalytic proteinase complex that seems to be involved in an ATP/ubiquitin-dependent nonlysosomal proteolytic pathway. In eukaryotes the proteasome is composed of about 28 distinct subunits which form a highly ordered ring-shaped structure (20S ring) of about 700 kDa. Most proteasome subunits can be classified, on the basis on sequence similarities into two groups, alpha (A) and beta (B). This family contains the alpha subunit sequences which range from 210 to 290 amino acids. These sequences are classified as non-peptidase homologues in MEROPS peptidase family T1 (clan PB(T)). ; GO: 0004175 endopeptidase activity, 0006511 ubiquitin-dependent protein catabolic process, 0019773 proteasome core complex, alpha-subunit complex; PDB: 3H4P_M 1IRU_O 3UN4_U 1FNT_A 3OEV_G 3OEU_U 3SDK_U 3DY3_G 3MG7_G 3L5Q_C ....
Probab=99.52 E-value=5.8e-15 Score=76.99 Aligned_cols=23 Identities=78% Similarity=1.314 Sum_probs=22.3
Q ss_pred CCCCCeeeCCCCccchhhhHHHH
Q 027555 4 YDRAITVFSPDGHLFQVEYALEA 26 (222)
Q Consensus 4 yd~~~~~fsp~G~l~q~eya~~a 26 (222)
||+++|+|||+|||+|||||+||
T Consensus 1 YD~~~t~FSp~Grl~QVEYA~~A 23 (23)
T PF10584_consen 1 YDRSITTFSPDGRLFQVEYAMKA 23 (23)
T ss_dssp TSSSTTSBBTTSSBHHHHHHHHH
T ss_pred CCCCceeECCCCeEEeeEeeecC
Confidence 89999999999999999999986
No 49
>COG3484 Predicted proteasome-type protease [Posttranslational modification, protein turnover, chaperones]
Probab=99.32 E-value=2.7e-11 Score=96.25 Aligned_cols=181 Identities=15% Similarity=0.135 Sum_probs=137.0
Q ss_pred CcEEEEEeCCEEEEEEeecccccccccCccccEEEec----CcEEEEEeccHHHHHHHHHHHHHHHHHhhh-hcCCCCCH
Q 027555 31 NAAVGVRGTDTIVLGVEKKSTVKLQDSRSVRKIVSLD----NHIALACAGLKADARVLINRARIECQSHRL-TVEDPVTV 105 (222)
Q Consensus 31 ~t~igi~~~dgVvla~d~~~~~~l~~~~~~~Ki~~i~----~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~-~~~~~i~~ 105 (222)
+=|||++.+.|.|+++|+|++..+-.....+|+|... .-++++.+|..+-.|.++..+.+..+.... ..-.-+++
T Consensus 2 TYCv~l~l~~GlVf~sDsRTNAGvD~istfkKl~~~~~pGdRvlvl~taGNLA~tQaV~~ll~e~~~~d~~~~L~n~~sm 81 (255)
T COG3484 2 TYCVGLILDFGLVFGSDSRTNAGVDYISTFKKLFVFELPGDRVLVLCTAGNLAITQAVLHLLDERIQRDDGDSLLNIPSM 81 (255)
T ss_pred ceEEEEEeccceEEecccccccCchHHHHHHHHhhccCCCceEEEEEecCccHHHHHHHHHHHHHhhccchhhhhcchhH
Confidence 4589999999999999999988654444567766542 346788999999999999999877652211 11223467
Q ss_pred HHHHHHHHHHHHhhcccCC------CccceeeeEEEEEeCCCCccEEEEECCCCceec----ccEEEecCChHHHHHHHH
Q 027555 106 EYITRYIAGLQQKYTQSGG------VRPFGLSTLIVGFDPYTGVPSLYQTDPSGTFSA----WKANATGRNSNSMREFLE 175 (222)
Q Consensus 106 ~~la~~ls~~~~~~~~~~~------~rP~~v~~ivaG~d~~~~gp~ly~iD~~G~~~~----~~~~a~G~g~~~~~~~Le 175 (222)
-+.+..+.....+...+.. ---|.|++|++|.-. .+-|.||.+-|.|++.+ .++..+|... +.+++|+
T Consensus 82 ~eattlvgetvrEv~~rds~~leka~~dfn~sfllGGQI~-G~pp~Ly~IYpqGNFIqaT~etpf~QiGEtK-YGKPild 159 (255)
T COG3484 82 YEATTLVGETVREVQARDSPALEKAGIDFNCSFLLGGQIK-GEPPRLYLIYPQGNFIQATPETPFLQIGETK-YGKPILD 159 (255)
T ss_pred HHHHHHHHHHHHHHHhccCchhhccCcceeEEEEEcceec-CCCceeEEEccCCCeeecCCCCceeEccccc-cCchhhh
Confidence 7777777777765543221 113899999999985 44589999999999985 5899999876 7899999
Q ss_pred hhcCCCCh-HHHHHHHHHHHHHHhhcC---CCceEEEEEecC
Q 027555 176 KNYKETSG-QETIKLAIRALLEVCSFL---YFRMSLGMVITK 213 (222)
Q Consensus 176 ~~~~~~ls-~ea~~l~~~~l~~~~~~d---~~~~~v~~v~~~ 213 (222)
+.+.-+++ +|+.++++-++.+.+..+ +..+.+.++..+
T Consensus 160 R~i~~~~pLeea~kcaLvS~DSTlkSNiSVGlPldLl~~e~d 201 (255)
T COG3484 160 RTITYDTPLEEAAKCALVSFDSTLKSNISVGLPLDLLVYEAD 201 (255)
T ss_pred hhhhccCCHHHHhhheEEecchhhhccccccCCceeEEEecc
Confidence 99999999 999999999999999875 334555555443
No 50
>COG5405 HslV ATP-dependent protease HslVU (ClpYQ), peptidase subunit [Posttranslational modification, protein turnover, chaperones]
Probab=99.23 E-value=1.6e-10 Score=88.84 Aligned_cols=156 Identities=17% Similarity=0.141 Sum_probs=120.5
Q ss_pred cCCcEEEEEeCCEEEEEEeecccc-cccccCccccEEEecC-cEEEEEeccHHHHHHHHHHHHHHHHHhhhhcCCCCCHH
Q 027555 29 KGNAAVGVRGTDTIVLGVEKKSTV-KLQDSRSVRKIVSLDN-HIALACAGLKADARVLINRARIECQSHRLTVEDPVTVE 106 (222)
Q Consensus 29 ~G~t~igi~~~dgVvla~d~~~~~-~l~~~~~~~Ki~~i~~-~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~i~~~ 106 (222)
+++|+++++-++-|+||+|...+. ..+...+..|+-+|.. ++..+++|..+|+..|.+.+..+++.|. .
T Consensus 3 h~TTiv~vr~~gkv~iagDGQVtlG~tvmK~narKvRkl~~gkvlaGFAGstADaftLfe~fe~kle~~~---------g 73 (178)
T COG5405 3 HMTTIVAVRKNGKVVIAGDGQVTLGNTVMKGNARKVRRLYNGKVLAGFAGSTADAFTLFERFEAKLEQYQ---------G 73 (178)
T ss_pred eeEEEEEEeeCCeEEEecCceEeecceeeeccHHHHHHHcCCcEEEEecccchhHHHHHHHHHHHHHHcc---------C
Confidence 689999999999999999999887 4566667777766654 8999999999999999999999998875 2
Q ss_pred HHHHHHHHHHHhhcccCCCccceeeeEEEEEeCCCCccEEEEECCCCceec--ccEEEecCChHHHHHHHHhhcCC-CCh
Q 027555 107 YITRYIAGLQQKYTQSGGVRPFGLSTLIVGFDPYTGVPSLYQTDPSGTFSA--WKANATGRNSNSMREFLEKNYKE-TSG 183 (222)
Q Consensus 107 ~la~~ls~~~~~~~~~~~~rP~~v~~ivaG~d~~~~gp~ly~iD~~G~~~~--~~~~a~G~g~~~~~~~Le~~~~~-~ls 183 (222)
.|.+..-++..++..-..+|-+..-++|+-- -.++-+...|...+ .+..++|||..++..--...++. ++
T Consensus 74 ~L~raavelaKdwr~Dk~lr~LEAmllVad~------~~il~isG~gdV~epe~~~~aIGSGgnyAl~AarAl~~~~~l- 146 (178)
T COG5405 74 DLFRAAVELAKDWRTDKYLRKLEAMLLVADK------THILIITGNGDVIEPEDDIIAIGSGGNYALSAARALMENTEL- 146 (178)
T ss_pred cHHHHHHHHHHhhhhhhHHHHHhhheeEeCC------CcEEEEecCcceecCCCCeEEEcCCchHHHHHHHHHHhccCC-
Confidence 3344444455555444455678888888733 35888889999875 36999999999999987776643 55
Q ss_pred HHHHHHHHHHHHHHhhcC
Q 027555 184 QETIKLAIRALLEVCSFL 201 (222)
Q Consensus 184 ~ea~~l~~~~l~~~~~~d 201 (222)
.|.+++.++|..+.+-.
T Consensus 147 -sA~eIa~~sl~iA~eic 163 (178)
T COG5405 147 -SAREIAEKSLKIAGDIC 163 (178)
T ss_pred -CHHHHHHHHHhhhheEE
Confidence 56677888888887654
No 51
>PF09894 DUF2121: Uncharacterized protein conserved in archaea (DUF2121); InterPro: IPR016754 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function. They do show distant similarity to NTPases and to nucleic acid binding enzymes.
Probab=96.44 E-value=0.32 Score=39.08 Aligned_cols=44 Identities=14% Similarity=0.090 Sum_probs=36.1
Q ss_pred HHHHHHHHhhcCCCCh-HHHHHHHHHHHHHHhhcC---CCceEEEEEe
Q 027555 168 NSMREFLEKNYKETSG-QETIKLAIRALLEVCSFL---YFRMSLGMVI 211 (222)
Q Consensus 168 ~~~~~~Le~~~~~~ls-~ea~~l~~~~l~~~~~~d---~~~~~v~~v~ 211 (222)
+.+...|.++|+|.|+ +++.++..++|..+...- ...+.+..+.
T Consensus 131 ~ia~~~lkk~~~~k~~l~~i~~i~~~i~~~~a~~tpsvS~~~d~~~~~ 178 (194)
T PF09894_consen 131 EIANKELKKYWKPKMSLKDIENIFEKIMEEVASKTPSVSKEYDIYITT 178 (194)
T ss_pred HHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHhhcCCCccCcEEEEEec
Confidence 6788889999999999 999999999999996653 4566666444
No 52
>COG4079 Uncharacterized protein conserved in archaea [Function unknown]
Probab=86.27 E-value=19 Score=30.28 Aligned_cols=152 Identities=17% Similarity=0.163 Sum_probs=86.9
Q ss_pred CcEEEEEeCCEEEEEEeecccccccccCccccEEEecCcEEEEEeccHHHHHHHHHHHHHHHHHhhhhcCCCCCHHHHHH
Q 027555 31 NAAVGVRGTDTIVLGVEKKSTVKLQDSRSVRKIVSLDNHIALACAGLKADARVLINRARIECQSHRLTVEDPVTVEYITR 110 (222)
Q Consensus 31 ~t~igi~~~dgVvla~d~~~~~~l~~~~~~~Ki~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~i~~~~la~ 110 (222)
+.+|+-.++||.|+|.|+|. +++-|...|...|-+.| -.|.=-|-+.|++
T Consensus 2 tLviay~gknGaviaGDrR~---------------------i~frgdee~re~lEekL---------YsGeIkteEEL~r 51 (293)
T COG4079 2 TLVIAYIGKNGAVIAGDRRE---------------------ITFRGDEEDREKLEEKL---------YSGEIKTEEELAR 51 (293)
T ss_pred eEEEEEecCCCcEEeccceE---------------------EEEecChhHHHHHHHHh---------hcCccccHHHHHH
Confidence 56789999999999999974 24556666666554433 3455556777887
Q ss_pred HHHHHHHhhcc---cCCCccceeeeEEEEEeCC----CCccEEEEE-------CCCCceec-------ccEEEecC--Ch
Q 027555 111 YIAGLQQKYTQ---SGGVRPFGLSTLIVGFDPY----TGVPSLYQT-------DPSGTFSA-------WKANATGR--NS 167 (222)
Q Consensus 111 ~ls~~~~~~~~---~~~~rP~~v~~ivaG~d~~----~~gp~ly~i-------D~~G~~~~-------~~~~a~G~--g~ 167 (222)
.+.++--+++- +...|-..-+++++-+..- -..-++|.+ +-.|+-.. ...++.|. ..
T Consensus 52 ~aeel~Vki~vtDdr~KVrk~~d~VvvGEV~s~~~~~vkRRRvYAT~Ga~aIvel~gs~vts~~~g~g~aiIv~Gnk~~K 131 (293)
T COG4079 52 KAEELGVKITVTDDRNKVRKRNDGVVVGEVSSVERGIVKRRRVYATAGAYAIVELRGSEVTSTSQGKGSAIIVFGNKFTK 131 (293)
T ss_pred HHHHcCCEEEEEcchHhhhcccCcEEEEEeecccccceeeeEEeecCCceEEEEecCCeeEeeecCCCceEEEECcHHHH
Confidence 77665322221 0111222223333333310 011234442 22222211 12233332 12
Q ss_pred HHHHHHHHhhcCCCCh-HHHHHHHHHHHHHHhhc-C--CCceEEEEEec
Q 027555 168 NSMREFLEKNYKETSG-QETIKLAIRALLEVCSF-L--YFRMSLGMVIT 212 (222)
Q Consensus 168 ~~~~~~Le~~~~~~ls-~ea~~l~~~~l~~~~~~-d--~~~~~v~~v~~ 212 (222)
+.+..+|.++|.+.++ +++.++..++|..+..- . ...+.+..++.
T Consensus 132 e~aneflk~~l~~k~~lqd~~dal~elfe~vss~tpsVskeydiy~vs~ 180 (293)
T COG4079 132 EVANEFLKDNLTKKSKLQDAVDALMELFETVSSKTPSVSKEYDIYQVSS 180 (293)
T ss_pred HHHHHHHHhhccCCCCHHHHHHHHHHHHHHhhcCCCcccceeEEEEecC
Confidence 5677889999999999 99999999999988844 2 45666665554
No 53
>KOG3361 consensus Iron binding protein involved in Fe-S cluster formation [Energy production and conversion]
Probab=81.52 E-value=2.6 Score=31.90 Aligned_cols=42 Identities=21% Similarity=0.240 Sum_probs=37.7
Q ss_pred EEECCCCceecccEEEecCChHHHHHHHHhhcCCCCh-HHHHH
Q 027555 147 YQTDPSGTFSAWKANATGRNSNSMREFLEKNYKETSG-QETIK 188 (222)
Q Consensus 147 y~iD~~G~~~~~~~~a~G~g~~~~~~~Le~~~~~~ls-~ea~~ 188 (222)
..+|-+|.+...++-..|.|+..+..-+-..|-..++ +|+.+
T Consensus 71 Ikvd~~g~I~dakFKTFGCGSAIASSS~aTewvkgkt~dea~k 113 (157)
T KOG3361|consen 71 IKVDDSGVIEDAKFKTFGCGSAIASSSLATEWVKGKTLDEALK 113 (157)
T ss_pred EEECCCCcEEEeeeeecccchHhhhhHHHHHHHccccHHHHHh
Confidence 4678899999999999999999999999999999998 88864
No 54
>smart00481 POLIIIAc DNA polymerase alpha chain like domain. DNA polymerase alpha chain like domain, incl. family of hypothetical proteins
Probab=59.05 E-value=13 Score=24.11 Aligned_cols=32 Identities=25% Similarity=0.275 Sum_probs=28.5
Q ss_pred eeeCC-CCccchhhhHHHHHhcCCcEEEEEeCC
Q 027555 9 TVFSP-DGHLFQVEYALEAVRKGNAAVGVRGTD 40 (222)
Q Consensus 9 ~~fsp-~G~l~q~eya~~a~~~G~t~igi~~~d 40 (222)
|.||+ +|.+..-+++..+..+|-..+||.-.+
T Consensus 6 t~~S~~~~~~~~~~~~~~a~~~g~~~v~iTDh~ 38 (67)
T smart00481 6 SDYSLLDGALSPEELVKRAKELGLKAIAITDHG 38 (67)
T ss_pred cCCccccccCCHHHHHHHHHHcCCCEEEEeeCC
Confidence 56888 999999999999999999999998766
No 55
>PRK00912 ribonuclease P protein component 3; Provisional
Probab=49.68 E-value=20 Score=29.65 Aligned_cols=38 Identities=24% Similarity=0.322 Sum_probs=33.8
Q ss_pred CCCCCCCCeeeCCCCccchhhhHHHHHhcCCcEEEEEeC
Q 027555 1 MARYDRAITVFSPDGHLFQVEYALEAVRKGNAAVGVRGT 39 (222)
Q Consensus 1 ~~~yd~~~~~fsp~G~l~q~eya~~a~~~G~t~igi~~~ 39 (222)
||-||.++.+ +|+|...--|++.+|+..|=..|||...
T Consensus 1 ~m~~DlHvHt-~~d~~~~~~e~i~~A~~~Gl~~i~itdH 38 (237)
T PRK00912 1 MKFYDLNVHA-VPDGYDTVLRLISEASHLGYSGIALSNH 38 (237)
T ss_pred CCceEeccCC-CCCCcchHHHHHHHHHHCCCCEEEEecC
Confidence 7889999998 5889888889999999999999999754
No 56
>PF05681 Fumerase: Fumarate hydratase (Fumerase); InterPro: IPR004646 This entry represents various Fe-S type hydro-lyases, including the alpha subunit from both L-tartrate dehydratase (TtdA; 4.2.1.32 from EC) and class 1 fumarate hydratases (4.2.1.2 from EC), which includes both aerobic (FumA) and anaerobic (FumB) types []. A number of Fe-S cluster-containing hydro-lyases share a conserved motif, including argininosuccinate lyase, adenylosuccinate lyase, aspartase, class I fumarate hydratase (fumarase), and tartrate dehydratase (see IPR000362 from INTERPRO). Proteins in this group represent a subset of closely related proteins or modules, including the Escherichia coli tartrate dehydratase alpha chain and the N-terminal region of the class I fumarase (where the C-terminal region is homologous to the tartrate dehydratase beta chain). The activity of archaeal proteins in this group is unknown. Fumarate hydratase (also known as fumarase) is a component of the citric acid cycle. In facultative anaerobes such as E. coli, fumarase also engages in the reductive pathway from oxaloacetate to succinate during anaerobic growth. Three fumarases, FumA, FumB, and FumC, have been reported in E. coli. fumA and fumB genes are homologous and encode products of identical sizes which form thermolabile dimers of Mr 120,000. FumA and FumB are class I enzymes and are members of the iron-dependent hydrolases, which include aconitase and malate hydratase. The active FumA contains a 4Fe-4S centre, and it can be inactivated upon oxidation to give a 3Fe-4S centre [].; GO: 0016829 lyase activity
Probab=44.55 E-value=2e+02 Score=24.58 Aligned_cols=100 Identities=15% Similarity=0.143 Sum_probs=60.5
Q ss_pred HHHHHHHHHHHhhcccCCCcccee-eeEEEEEeCCCCccEE-EEECCCCceecccEEEecCChHHHHHHHHhhcCCCCh-
Q 027555 107 YITRYIAGLQQKYTQSGGVRPFGL-STLIVGFDPYTGVPSL-YQTDPSGTFSAWKANATGRNSNSMREFLEKNYKETSG- 183 (222)
Q Consensus 107 ~la~~ls~~~~~~~~~~~~rP~~v-~~ivaG~d~~~~gp~l-y~iD~~G~~~~~~~~a~G~g~~~~~~~Le~~~~~~ls- 183 (222)
.+-..|.+=+.+-+....+||-.| ..+ -..+..++-|.+ +.--..|...+....+-|.|+.....+ +...|.-.
T Consensus 79 ~l~~ai~~gv~~a~~~~~LR~s~V~~pl-~r~Ntgdn~P~ii~~~~v~gd~l~i~~~~KGgGsEn~s~l--~ml~p~~g~ 155 (271)
T PF05681_consen 79 DLEEAINEGVRKAYKEGPLRPSVVSDPL-TRKNTGDNTPAIIHIEIVPGDKLEITVLPKGGGSENMSAL--KMLNPSDGI 155 (271)
T ss_pred hHHHHHHHHHHHHHhcCCCCccccCCcc-ccccCCCCCCceEEEEEcCCCEEEEEEEecCCCcccHhhh--hccCccccH
Confidence 455555555554445566788888 434 666654466777 443456788889999999999655444 33455555
Q ss_pred HHHHHHHHHHHHHHhhcCCCceEEEE
Q 027555 184 QETIKLAIRALLEVCSFLYFRMSLGM 209 (222)
Q Consensus 184 ~ea~~l~~~~l~~~~~~d~~~~~v~~ 209 (222)
+...+.+++++..+--..=+.+.|+|
T Consensus 156 e~v~~fV~d~v~~ag~~~CPP~~iGV 181 (271)
T PF05681_consen 156 EGVKKFVLDTVKKAGGNACPPYIIGV 181 (271)
T ss_pred HHHHHHHHHHHHhcCCCCCCCCceEE
Confidence 56666666666655544323334443
No 57
>PRK07328 histidinol-phosphatase; Provisional
Probab=44.27 E-value=27 Score=29.43 Aligned_cols=39 Identities=21% Similarity=0.154 Sum_probs=32.4
Q ss_pred CCCCCCCC-eeeCCCCccchhhhHHHHHhcCCcEEEEEeC
Q 027555 1 MARYDRAI-TVFSPDGHLFQVEYALEAVRKGNAAVGVRGT 39 (222)
Q Consensus 1 ~~~yd~~~-~~fsp~G~l~q~eya~~a~~~G~t~igi~~~ 39 (222)
||..|.+. |.||++|.-.--||+.+|+.+|-..+|+.-.
T Consensus 1 ~m~~D~H~HT~~s~~~~~~~ee~v~~A~~~Gl~~i~~TdH 40 (269)
T PRK07328 1 KMLVDYHMHTPLCGHAVGTPEEYVQAARRAGLKEIGFTDH 40 (269)
T ss_pred CCceeeccCCCCCCCCCCCHHHHHHHHHHCCCCEEEEecC
Confidence 66777766 4688899888778999999999999999754
No 58
>PF07499 RuvA_C: RuvA, C-terminal domain; InterPro: IPR011114 In prokaryotes, RuvA, RuvB, and RuvC process the universal DNA intermediate of homologous recombination, termed Holliday junction. The tetrameric DNA helicase RuvA specifically binds to the Holliday junction and facilitates the isomerization of the junction from the stacked folded configuration to the square-planar structure []. In the RuvA tetramer, each subunit consists of three domains, I, II and III, where I and II form the major core that is responsible for Holliday junction binding and base pair rearrangements of Holliday junction executed at the crossover point, whereas domain III regulates branch migration through direct contact with RuvB. The domain represents the C-terminal domain III of RuvA. This domain plays a significant role in the ATP-dependent branch migration of the hetero-duplex through direct contact with RuvB []. Within the Holliday junction, this domain makes no interaction with the DNA.; GO: 0005524 ATP binding, 0009378 four-way junction helicase activity, 0006281 DNA repair, 0006310 DNA recombination, 0009379 Holliday junction helicase complex; PDB: 1HJP_A 1CUK_A 1C7Y_A 1IXS_A 1IXR_B 1BVS_E 2ZTC_A 2ZTD_B 2H5X_A.
Probab=43.94 E-value=19 Score=21.89 Aligned_cols=31 Identities=23% Similarity=0.248 Sum_probs=22.8
Q ss_pred ecCChHHHHHHHHhhc-CCCCh-HHHHHHHHHH
Q 027555 163 TGRNSNSMREFLEKNY-KETSG-QETIKLAIRA 193 (222)
Q Consensus 163 ~G~g~~~~~~~Le~~~-~~~ls-~ea~~l~~~~ 193 (222)
-|.....+...+.+.. .++++ ++.++.+++.
T Consensus 13 LGy~~~e~~~av~~~~~~~~~~~e~~ik~aLk~ 45 (47)
T PF07499_consen 13 LGYSKAEAQKAVSKLLEKPGMDVEELIKQALKL 45 (47)
T ss_dssp TTS-HHHHHHHHHHHHHSTTS-HHHHHHHHHCC
T ss_pred cCCCHHHHHHHHHHhhcCCCCCHHHHHHHHHhh
Confidence 4778888888888776 88898 8888777654
No 59
>PRK09732 hypothetical protein; Provisional
Probab=42.27 E-value=80 Score=23.94 Aligned_cols=39 Identities=8% Similarity=-0.136 Sum_probs=33.1
Q ss_pred CCCh-HHHHHHHHHHHHHHhhcCCCceEEEEEecCceEEee
Q 027555 180 ETSG-QETIKLAIRALLEVCSFLYFRMSLGMVITKYYEHLY 219 (222)
Q Consensus 180 ~~ls-~ea~~l~~~~l~~~~~~d~~~~~v~~v~~~~~~~~~ 219 (222)
+.|| +.|.+++..++..+.+. ..++.|.|||..|....+
T Consensus 5 ~~Ltl~~A~~~~~aA~~~A~~~-g~~v~iaVvD~~G~l~a~ 44 (134)
T PRK09732 5 VILSQQMASAIIAAGQEEAQKN-NWSVSIAVADDGGHLLAL 44 (134)
T ss_pred ccCCHHHHHHHHHHHHHHHHHh-CCCEEEEEEcCCCCEEEE
Confidence 4588 99999999999998887 458999999999887744
No 60
>PF04539 Sigma70_r3: Sigma-70 region 3; InterPro: IPR007624 The bacterial core RNA polymerase complex, which consists of five subunits, is sufficient for transcription elongation and termination but is unable to initiate transcription. Transcription initiation from promoter elements requires a sixth, dissociable subunit called a sigma factor, which reversibly associates with the core RNA polymerase complex to form a holoenzyme []. RNA polymerase recruits alternative sigma factors as a means of switching on specific regulons. Most bacteria express a multiplicity of sigma factors. Two of these factors, sigma-70 (gene rpoD), generally known as the major or primary sigma factor, and sigma-54 (gene rpoN or ntrA) direct the transcription of a wide variety of genes. The other sigma factors, known as alternative sigma factors, are required for the transcription of specific subsets of genes. With regard to sequence similarity, sigma factors can be grouped into two classes, the sigma-54 and sigma-70 families. Sequence alignments of the sigma70 family members reveal four conserved regions that can be further divided into subregions eg. sub-region 2.2, which may be involved in the binding of the sigma factor to the core RNA polymerase; and sub-region 4.2, which seems to harbor a DNA-binding 'helix-turn-helix' motif involved in binding the conserved -35 region of promoters recognised by the major sigma factors [, ]. Region 3 forms a discrete compact three helical domain within the sigma-factor. Region is not normally involved in the recognition of promoter DNA, but in some specific bacterial promoters containing an extended -10 promoter element, residues within region 3 play an important role. Region 3 primarily is involved in binding the core RNA polymerase in the holoenzyme [].; GO: 0003677 DNA binding, 0003700 sequence-specific DNA binding transcription factor activity, 0016987 sigma factor activity, 0006352 transcription initiation, DNA-dependent, 0006355 regulation of transcription, DNA-dependent; PDB: 1L0O_C 1KU2_B 1RP3_C 1SC5_A 1TTY_A 2BE5_F 2A6E_F 2CW0_F 2A69_P 2A6H_P ....
Probab=38.17 E-value=54 Score=21.66 Aligned_cols=31 Identities=10% Similarity=-0.027 Sum_probs=20.8
Q ss_pred HHHHHHHHHHhhhhcCCCCCHHHHHHHHHHH
Q 027555 85 INRARIECQSHRLTVEDPVTVEYITRYIAGL 115 (222)
Q Consensus 85 ~~~~~~~~~~~~~~~~~~i~~~~la~~ls~~ 115 (222)
++.+++-........|+.++.+.+|..+.--
T Consensus 3 l~~i~~a~~~L~~~lgr~Pt~eEiA~~lgis 33 (78)
T PF04539_consen 3 LRKIERARRELEQELGREPTDEEIAEELGIS 33 (78)
T ss_dssp HHHHHHHHHHHHHHHSS--BHHHHHHHHTS-
T ss_pred HHHHHHHHHHHHHHhCCCCCHHHHHHHHccc
Confidence 4455556666777889999999999987533
No 61
>PF05117 DUF695: Family of unknown function (DUF695) ; InterPro: IPR016097 This entry is found at the N terminus of a number of proteobacterial proteins of unknown function.
Probab=34.80 E-value=1.3e+02 Score=22.32 Aligned_cols=35 Identities=11% Similarity=0.112 Sum_probs=27.0
Q ss_pred HHHHHHHHHHHHhhcCCCceEEEEEecCceEEeee
Q 027555 186 TIKLAIRALLEVCSFLYFRMSLGMVITKYYEHLYY 220 (222)
Q Consensus 186 a~~l~~~~l~~~~~~d~~~~~v~~v~~~~~~~~~~ 220 (222)
.+.-...+|...+..+...+-++++..+|.|..||
T Consensus 60 ~L~~iEd~i~~~l~~~~~~i~vG~~t~~g~r~~~f 94 (136)
T PF05117_consen 60 ELNDIEDAIIEALEADGNAIYVGRITGNGRREFYF 94 (136)
T ss_pred HHHHHHHHHHHHhhcCCcceEEEEEEECCEEEEEE
Confidence 34445566666667667789999999999999887
No 62
>COG1754 Uncharacterized C-terminal domain of topoisomerase IA [General function prediction only]
Probab=33.22 E-value=26 Score=30.10 Aligned_cols=56 Identities=25% Similarity=0.361 Sum_probs=38.2
Q ss_pred EEEEeCCCCccEEEEECCCCceecccEEEecCC-hHHHHHHHHhhcCC-CCh-HHHHHHHHH
Q 027555 134 IVGFDPYTGVPSLYQTDPSGTFSAWKANATGRN-SNSMREFLEKNYKE-TSG-QETIKLAIR 192 (222)
Q Consensus 134 vaG~d~~~~gp~ly~iD~~G~~~~~~~~a~G~g-~~~~~~~Le~~~~~-~ls-~ea~~l~~~ 192 (222)
+.|.||+.+.+-.......|-+++. ..|.. -.....-|-+.|.+ +++ |+|++|...
T Consensus 77 ~LG~DP~tG~eI~~k~GryGPYVq~---~lg~~~~kpkraSLpkg~~~e~ItLE~AL~LLsL 135 (298)
T COG1754 77 VLGIDPETGEEIYLKNGRYGPYVQE---QLGDPKPKPKRASLPKGWKPETITLEKALKLLSL 135 (298)
T ss_pred ccccCCCCCceeEEeccCCCceeee---ecCCCCCCcccccCCCCCChhhCcHHHHHHHHcC
Confidence 5588986666777777788877654 45655 44444556677775 688 999988653
No 63
>KOG3652 consensus Uncharacterized conserved protein [Function unknown]
Probab=32.79 E-value=85 Score=30.46 Aligned_cols=116 Identities=16% Similarity=0.108 Sum_probs=69.2
Q ss_pred EEeccHHHHHHHHHHHHHHHHHhhhhcCCCCCHHHHHHHHHHHHHhhcccCCCccceeeeEEEEEeCCCCccEEEEECCC
Q 027555 73 ACAGLKADARVLINRARIECQSHRLTVEDPVTVEYITRYIAGLQQKYTQSGGVRPFGLSTLIVGFDPYTGVPSLYQTDPS 152 (222)
Q Consensus 73 ~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~i~~~~la~~ls~~~~~~~~~~~~rP~~v~~ivaG~d~~~~gp~ly~iD~~ 152 (222)
.-+|-++-+..|++.+.. ...|++|.+.+|.++.+.++|-.... -|-|-.++|.+= -+||-||..|--
T Consensus 191 ~eAGRAaAc~sLcRIfcS------KksgEeIl~a~LS~FY~ll~Q~Lq~k----dyvchpmLasl~--ln~p~LFccdLk 258 (1215)
T KOG3652|consen 191 VEAGRAAACASLCRIFCS------KKSGEEILNAQLSNFYALLFQCLQEK----DYVCHPMLASLF--LNGPNLFCCDLK 258 (1215)
T ss_pred hhhhHHHHHHHHHHhhhc------ccCcccccHHHHHHHHHHHHHHHhhc----ccccchhheeee--ecCCceeeecCC
Confidence 345666666666555432 34688999999999999888744322 355555666554 368999999998
Q ss_pred CceecccEEEecCChHHHHHHHHhhcCCCCh-HHHHHHHHHHHHHHhhc
Q 027555 153 GTFSAWKANATGRNSNSMREFLEKNYKETSG-QETIKLAIRALLEVCSF 200 (222)
Q Consensus 153 G~~~~~~~~a~G~g~~~~~~~Le~~~~~~ls-~ea~~l~~~~l~~~~~~ 200 (222)
|--.-.++.-.--.--++...+-+.++.-.+ .|...-++++|.+++-=
T Consensus 259 GId~llP~Fi~ALd~il~dre~~rkfkS~~n~tElRRa~in~LlSli~l 307 (1215)
T KOG3652|consen 259 GIDSLLPHFIFALDIILIDREKLRKFKSISNETELRRACINALLSLICL 307 (1215)
T ss_pred chhHhhHHHHHHHHhhhccHHHhhhccccCCHHHHHHHHHHHHHHhccC
Confidence 8654444321111111111111123333334 88888888888877654
No 64
>COG3193 GlcG Uncharacterized protein, possibly involved in utilization of glycolate and propanediol [General function prediction only]
Probab=31.95 E-value=1.5e+02 Score=22.78 Aligned_cols=40 Identities=13% Similarity=-0.022 Sum_probs=33.1
Q ss_pred CCCCh-HHHHHHHHHHHHHHhhcCCCceEEEEEecCceEEee
Q 027555 179 KETSG-QETIKLAIRALLEVCSFLYFRMSLGMVITKYYEHLY 219 (222)
Q Consensus 179 ~~~ls-~ea~~l~~~~l~~~~~~d~~~~~v~~v~~~~~~~~~ 219 (222)
.+.++ ++|.+++..++.++.+. ..++.+.||+..|-..-+
T Consensus 5 ~~~Ls~e~a~~ii~aA~a~a~~~-g~~VtvaVVD~~G~~~a~ 45 (141)
T COG3193 5 KPVLSLELANKIIAAAVAEAQQL-GVPVTVAVVDAGGHLVAL 45 (141)
T ss_pred ccccCHHHHHHHHHHHHHHHHHh-CCceEEEEECCCCCEEEE
Confidence 35788 99999999998888776 889999999998876643
No 65
>PF01242 PTPS: 6-pyruvoyl tetrahydropterin synthase; InterPro: IPR007115 The complex organic chemistry involved in the transformation of GTP to tetrahydrobiopterin is catalysed by only three enzymes: GTP cyclohydrolase I, 6-pyruvoyltetrahydropterin synthase and sepiapterin reductase. Tetrahydrobiopterin is the cofactor for several aromatic amino acid monooxygenases and the nitric oxide synthases. 6-Pyruvoyl tetrahydropterin synthase (PTPS) [] is a Zn-dependent metalloprotein, transforms dihydroneopterin triphosphate into 6-pyruvoyltetrahydropterin in the presence of Mg(II) and for which the crystal structure is known. The enzyme is a homohexameric, composed of a dimer of trimers. A transition metal binding site formed by the three histidine residues 23, 48 and 50 is present in each subunit, and bound Zn(II) is responsible for the enzymatic activity. Site-directed mutagenesis of each of these three histidine residues results in a complete loss of metal binding and enzymatic activity [, ]. The function of the bacterial branch of the sequence lineage appears not to have been established.; GO: 0003874 6-pyruvoyltetrahydropterin synthase activity, 0046872 metal ion binding, 0006729 tetrahydrobiopterin biosynthetic process; PDB: 3QNA_E 3QN9_A 3QN0_B 1Y13_C 3D7J_A 3I2B_J 2OBA_D 3M0N_A 2A0S_A 3LZE_A ....
Probab=30.82 E-value=1.1e+02 Score=22.22 Aligned_cols=46 Identities=17% Similarity=0.129 Sum_probs=28.8
Q ss_pred eccHHHHHHHHHHHHHHHHH--hhhhc-------CC-CCCHHHHHHHHHHHHHhhc
Q 027555 75 AGLKADARVLINRARIECQS--HRLTV-------ED-PVTVEYITRYIAGLQQKYT 120 (222)
Q Consensus 75 sG~~~D~~~l~~~~~~~~~~--~~~~~-------~~-~i~~~~la~~ls~~~~~~~ 120 (222)
.|..-|+..+.+.++..+.. +++-+ .. .+|++.+|.++...+....
T Consensus 43 ~g~v~DF~~lk~~~~~i~~~lDh~~Ln~~~~~~~~~~~pT~E~lA~~i~~~l~~~l 98 (123)
T PF01242_consen 43 DGMVVDFGDLKKIIKEIDDQLDHKFLNEDDPEFDDINNPTAENLARWIFERLKEKL 98 (123)
T ss_dssp TSSSS-HHHHHHHHHHHHHHHTTEEGGHHSGCGCSSTS--HHHHHHHHHHHHHHHH
T ss_pred CCEEEEHHHHHHHHHHHHHHhCcccccCCChhhhccCCCCHHHHHHHHHHHHHHHh
Confidence 46677888888887764443 23222 01 1789999999999987654
No 66
>PF06057 VirJ: Bacterial virulence protein (VirJ); InterPro: IPR010333 This entry contains several bacterial VirJ virulence proteins. VirJ is thought to be involved in the type IV secretion system. It is thought that the substrate proteins localised to the periplasm may associate with the pilus in a manner that is mediated by VirJ, and suggest a two-step process for type IV secretion in Agrobacterium [].
Probab=30.76 E-value=63 Score=26.17 Aligned_cols=33 Identities=18% Similarity=0.339 Sum_probs=26.4
Q ss_pred CCCHHHHHHHHHHHHHhhcccCCCccceeeeEEEEEe
Q 027555 102 PVTVEYITRYIAGLQQKYTQSGGVRPFGLSTLIVGFD 138 (222)
Q Consensus 102 ~i~~~~la~~ls~~~~~~~~~~~~rP~~v~~ivaG~d 138 (222)
+-+|++.|..++.+++.|.++++.+. ++++|+.
T Consensus 44 ~rtP~~~a~Dl~~~i~~y~~~w~~~~----vvLiGYS 76 (192)
T PF06057_consen 44 ERTPEQTAADLARIIRHYRARWGRKR----VVLIGYS 76 (192)
T ss_pred hCCHHHHHHHHHHHHHHHHHHhCCce----EEEEeec
Confidence 45899999999999999988765443 4777886
No 67
>PF02811 PHP: PHP domain; InterPro: IPR004013 The PHP (Polymerase and Histidinol Phosphatase) domain is a putative phosphoesterase domain. This family is often associated with an N-terminal region IPR003141 from INTERPRO.; GO: 0003824 catalytic activity; PDB: 2WJE_A 3QY8_A 2WJD_A 2WJF_A 1PB0_B 1M68_A 1M65_A 3E38_B 2W9M_A 3E0F_A ....
Probab=29.98 E-value=48 Score=25.10 Aligned_cols=31 Identities=32% Similarity=0.383 Sum_probs=26.4
Q ss_pred eeeC-CCCccchhhhHHHHHhcCCcEEEEEeC
Q 027555 9 TVFS-PDGHLFQVEYALEAVRKGNAAVGVRGT 39 (222)
Q Consensus 9 ~~fs-p~G~l~q~eya~~a~~~G~t~igi~~~ 39 (222)
|.|| .+|....-||+..|...|=+.|||.-.
T Consensus 7 T~~s~~dg~~~~~e~v~~A~~~Gl~~i~iTDH 38 (175)
T PF02811_consen 7 TKYSILDGKDSPEEYVEQAKEKGLDAIAITDH 38 (175)
T ss_dssp -TTTSSTSSSSHHHHHHHHHHTTESEEEEEEE
T ss_pred ccCcchhhcCCHHHHHHHHHHcCCCEEEEcCC
Confidence 4577 899999999999999999999998754
No 68
>COG0279 GmhA Phosphoheptose isomerase [Carbohydrate transport and metabolism]
Probab=28.10 E-value=76 Score=25.22 Aligned_cols=35 Identities=31% Similarity=0.358 Sum_probs=26.1
Q ss_pred eCCCCccchhhhHHHH-HhcCCcEEEEEeCCEEEEE
Q 027555 11 FSPDGHLFQVEYALEA-VRKGNAAVGVRGTDTIVLG 45 (222)
Q Consensus 11 fsp~G~l~q~eya~~a-~~~G~t~igi~~~dgVvla 45 (222)
+|+.|+=.-|=.|.++ ..+|-++||+.++||=-++
T Consensus 116 ISTSGNS~nVl~Ai~~Ak~~gm~vI~ltG~~GG~~~ 151 (176)
T COG0279 116 ISTSGNSKNVLKAIEAAKEKGMTVIALTGKDGGKLA 151 (176)
T ss_pred EeCCCCCHHHHHHHHHHHHcCCEEEEEecCCCcccc
Confidence 5777766666566544 4799999999999986665
No 69
>COG0161 BioA Adenosylmethionine-8-amino-7-oxononanoate aminotransferase [Coenzyme metabolism]
Probab=27.11 E-value=1.5e+02 Score=27.30 Aligned_cols=85 Identities=19% Similarity=0.195 Sum_probs=55.0
Q ss_pred HHHHHHHHHHhhcccCCCccceeeeEEEEEeCCCCccEEEEECCCCcee-----cccEEEecCChHHHHHHHHhhcCC--
Q 027555 108 ITRYIAGLQQKYTQSGGVRPFGLSTLIVGFDPYTGVPSLYQTDPSGTFS-----AWKANATGRNSNSMREFLEKNYKE-- 180 (222)
Q Consensus 108 la~~ls~~~~~~~~~~~~rP~~v~~ivaG~d~~~~gp~ly~iD~~G~~~-----~~~~~a~G~g~~~~~~~Le~~~~~-- 180 (222)
+....+.++|-||+... |.....+|..=+ =+|.+|.+|.-. .+.++.+|.+.+.+...+.+.-+.
T Consensus 6 ~~~d~~~~whP~t~~~~--~~~~~~~i~~ae------G~yl~d~~G~r~lDg~sg~W~~~~Gh~~~~i~~Ai~~Q~~~l~ 77 (449)
T COG0161 6 LAADLSHLWHPFTQMRD--PLAEPRVIVRAE------GVYLTDIDGRRYLDGMSGLWCVNHGHGRPEIAEAIKKQLDKLP 77 (449)
T ss_pred hhhhhhheecccccccc--ccccceeeeecc------eeEEEeCCCCEEEecccHHHHhhcCcCCHHHHHHHHHHHHhCC
Confidence 33456777777876542 222223332211 267778888764 457888999999888887765432
Q ss_pred -----CCh-HHHHHHHHHHHHHHhhc
Q 027555 181 -----TSG-QETIKLAIRALLEVCSF 200 (222)
Q Consensus 181 -----~ls-~ea~~l~~~~l~~~~~~ 200 (222)
..+ +.|++||.+-...+-+.
T Consensus 78 ~~~~~~~t~~Pa~~LA~~L~~~aP~~ 103 (449)
T COG0161 78 HVMFGGFTHEPAIELAEKLAELAPEG 103 (449)
T ss_pred chhhcccCCchHHHHHHHHHHhCCCC
Confidence 455 66999999888777643
No 70
>COG4831 Roadblock/LC7 domain [Function unknown]
Probab=25.91 E-value=31 Score=24.63 Aligned_cols=10 Identities=60% Similarity=1.085 Sum_probs=7.2
Q ss_pred eeCCCCccch
Q 027555 10 VFSPDGHLFQ 19 (222)
Q Consensus 10 ~fsp~G~l~q 19 (222)
.|||+|||..
T Consensus 19 efs~DGkLv~ 28 (109)
T COG4831 19 EFSPDGKLVE 28 (109)
T ss_pred eeCCCCceEE
Confidence 5888888753
No 71
>PRK15390 fumarate hydratase FumA; Provisional
Probab=25.69 E-value=4.4e+02 Score=25.00 Aligned_cols=103 Identities=12% Similarity=0.037 Sum_probs=61.7
Q ss_pred HHHHHHHHHHHhhcccCCCccceeeeEEEEEeCC---CCccEEEEECCC-CceecccEEEecCChHHHHHHHHhhcCCCC
Q 027555 107 YITRYIAGLQQKYTQSGGVRPFGLSTLIVGFDPY---TGVPSLYQTDPS-GTFSAWKANATGRNSNSMREFLEKNYKETS 182 (222)
Q Consensus 107 ~la~~ls~~~~~~~~~~~~rP~~v~~ivaG~d~~---~~gp~ly~iD~~-G~~~~~~~~a~G~g~~~~~~~Le~~~~~~l 182 (222)
.+...|++=.++-++....||-.|.. +-++++. ++-|....++.. |...+..+.+-|.||.. ++.|...-+.-+
T Consensus 126 ~~~eai~eGV~~ay~~~~LR~S~v~p-l~~~~r~NTgdNtpa~I~~~~v~gd~~~i~~~~KGGGSeN-~s~l~~~tk~mL 203 (548)
T PRK15390 126 GDEAALARGVYNTYIEDNLRYSQNAP-LDMYKEVNTGTNLPAQIDLYAVDGDEYKFLCIAKGGGSAN-KTYLYQETKALL 203 (548)
T ss_pred hHHHHHHHHHHHHhccCCcchhhcCC-CCccccccCCCCcccEEEEEEcCCCEEEEEEEecCCCccc-HHHHhhhccccC
Confidence 46666666665544445667766665 3344531 223544444433 88889999999999966 444544444556
Q ss_pred h-HHHHHHHHHHHHHHhhcCCCceEEEEEe
Q 027555 183 G-QETIKLAIRALLEVCSFLYFRMSLGMVI 211 (222)
Q Consensus 183 s-~ea~~l~~~~l~~~~~~d~~~~~v~~v~ 211 (222)
+ ++..+.+++.++.+=-..=+.+.|+|+.
T Consensus 204 ~p~~i~~FV~e~V~~~G~~aCPP~~vGVGI 233 (548)
T PRK15390 204 TPGKLKNYLVEKMRTLGTAACPPYHIAFVI 233 (548)
T ss_pred CHHHHHHHHHHHHHhcCCCCCCCceEEEEe
Confidence 6 6666666666665544433455566554
No 72
>PRK08230 tartrate dehydratase subunit alpha; Validated
Probab=25.60 E-value=4.5e+02 Score=22.87 Aligned_cols=90 Identities=9% Similarity=0.059 Sum_probs=47.5
Q ss_pred HHHHHHHHHHhhcccCCCccceeeeEEEEEeCCCCcc---EEEEEC--CCCceecccEEEecCChHHHHHHHHhhcCCCC
Q 027555 108 ITRYIAGLQQKYTQSGGVRPFGLSTLIVGFDPYTGVP---SLYQTD--PSGTFSAWKANATGRNSNSMREFLEKNYKETS 182 (222)
Q Consensus 108 la~~ls~~~~~~~~~~~~rP~~v~~ivaG~d~~~~gp---~ly~iD--~~G~~~~~~~~a~G~g~~~~~~~Le~~~~~~l 182 (222)
+-..+.+=+.+-+....+||-.|.. +-+.+..++.| .+..+| +.|...+.....-|.|+.....+ +..+|.-
T Consensus 89 l~~aI~egVr~a~~~~~LR~s~V~~-l~r~NtgdNt~~~~pvi~~~iv~~gd~l~I~~~~KGgGsEn~s~~--~mL~P~~ 165 (299)
T PRK08230 89 LESILKEAVEEATVKAPLRHNAVET-FDEYNTGKNTGSGVPWVFWEIVPDSDDAEIEVYMAGGGCTLPGRA--KVLMPGE 165 (299)
T ss_pred HHHHHHHHHHHHhccCCCCcccCCC-ccCcCCCCCCCCCCCEEEEEEecCCCEEEEEEEecCCCcccHhhh--eeeCCcc
Confidence 3344444433334445566666655 23333211222 255555 55788888899999998655333 3344544
Q ss_pred h-HHHHHHHHHHHHHHhhc
Q 027555 183 G-QETIKLAIRALLEVCSF 200 (222)
Q Consensus 183 s-~ea~~l~~~~l~~~~~~ 200 (222)
. +...+.+++++..+--.
T Consensus 166 g~egi~~fVle~V~~aG~~ 184 (299)
T PRK08230 166 GYEGVVKFVFDVITSYGVN 184 (299)
T ss_pred chhHHHHHHHHHHHhhCCC
Confidence 4 55555555555554443
No 73
>PF11211 DUF2997: Protein of unknown function (DUF2997); InterPro: IPR021375 This family of proteins has no known function.
Probab=24.92 E-value=1.2e+02 Score=18.68 Aligned_cols=32 Identities=16% Similarity=0.196 Sum_probs=25.2
Q ss_pred EEECCCCceecccEEEecCChHHHHHHHHhhc
Q 027555 147 YQTDPSGTFSAWKANATGRNSNSMREFLEKNY 178 (222)
Q Consensus 147 y~iD~~G~~~~~~~~a~G~g~~~~~~~Le~~~ 178 (222)
+.|+|+|.....---..|.....+...||+..
T Consensus 3 ~~I~~dG~V~~~v~G~~G~~C~~~t~~lE~~L 34 (48)
T PF11211_consen 3 FTIYPDGRVEEEVEGFKGSSCLEATAALEEAL 34 (48)
T ss_pred EEECCCcEEEEEEEeccChhHHHHHHHHHHHh
Confidence 67899999987777778888888888787644
No 74
>PF07104 DUF1366: Protein of unknown function (DUF1366); InterPro: IPR009796 This entry is represented by Streptococcus phage 7201, Orf40. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. This family consists of several hypothetical Streptococcus thermophilus bacteriophage proteins of around 130 residues in length. One of the sequences in this family, from phage Sfi11 (O80186 from SWISSPROT) is known as Gp149. The function of this family is unknown.
Probab=24.60 E-value=53 Score=24.34 Aligned_cols=50 Identities=24% Similarity=0.276 Sum_probs=23.9
Q ss_pred ECCCCceecccEEEecCChHHHHHHHHhhcCCCCh-HHHHHHHHHHHHHHhh
Q 027555 149 TDPSGTFSAWKANATGRNSNSMREFLEKNYKETSG-QETIKLAIRALLEVCS 199 (222)
Q Consensus 149 iD~~G~~~~~~~~a~G~g~~~~~~~Le~~~~~~ls-~ea~~l~~~~l~~~~~ 199 (222)
.|++|+....+..-.|.....+--.|...+ -+.+ .|.+++|.+.++....
T Consensus 11 ~~~dGsv~~T~ViL~~~dGa~ip~~L~~D~-~~ks~~ELi~~ale~iy~e~~ 61 (116)
T PF07104_consen 11 YDPDGSVSKTKVILTNDDGAYIPVFLPGDK-IDKSNTELIELALEMIYQENF 61 (116)
T ss_pred cCCCCCeeeeEEEEEcCCCcEEEeeCChhh-hcCCHHHHHHHHHHHHHHHhc
Confidence 355555555555555544322222232222 2445 6666666666554433
No 75
>PRK15391 fumarate hydratase FumB; Provisional
Probab=24.08 E-value=5e+02 Score=24.63 Aligned_cols=103 Identities=11% Similarity=0.046 Sum_probs=58.8
Q ss_pred HHHHHHHHHHHhhcccCCCccceeeeEEEEEeCC---CCccEEEEECCC-CceecccEEEecCChHHHHHHHHhhcCCCC
Q 027555 107 YITRYIAGLQQKYTQSGGVRPFGLSTLIVGFDPY---TGVPSLYQTDPS-GTFSAWKANATGRNSNSMREFLEKNYKETS 182 (222)
Q Consensus 107 ~la~~ls~~~~~~~~~~~~rP~~v~~ivaG~d~~---~~gp~ly~iD~~-G~~~~~~~~a~G~g~~~~~~~Le~~~~~~l 182 (222)
.+...|++=+++-++....||-.|.. +.+|++. ++-|....++.. |...+..+.+-|.||.. ++.|...-+.-+
T Consensus 126 ~~~eai~~GV~~ay~~~~LR~S~V~p-l~~~~r~NTgdNtpa~I~~~~v~Gd~~~i~~~~KGGGSeN-ks~l~~~tk~mL 203 (548)
T PRK15391 126 GDEEALSKGVYNTYIEDNLRYSQNAA-LDMYKEVNTGTNLPAQIDLYAVDGDEYKFLCVAKGGGSAN-KTYLYQETKALL 203 (548)
T ss_pred hHHHHHHHHHHHHhccCCcchhhcCC-CCccccccCCCCcccEEEEEEcCCCEEEEEEEecCCCccc-HHHHhhhccccC
Confidence 36666666665544455677777766 3344431 223544444432 88889999999999966 444543333445
Q ss_pred h-HHHHHHHHHHHHHHhhcCCCceEEEEEe
Q 027555 183 G-QETIKLAIRALLEVCSFLYFRMSLGMVI 211 (222)
Q Consensus 183 s-~ea~~l~~~~l~~~~~~d~~~~~v~~v~ 211 (222)
+ ++..+.+++.+..+=-..=+.+.|+|+.
T Consensus 204 ~p~~i~~FV~e~V~~~G~~aCPP~~vGVGI 233 (548)
T PRK15391 204 TPGKLKNFLVEKMRTLGTAACPPYHIAFVI 233 (548)
T ss_pred CHHHHHHHHHHHHHhcCCCCCCCceEEEEe
Confidence 5 5655555555555443333444555444
No 76
>PRK02487 hypothetical protein; Provisional
Probab=23.19 E-value=2.9e+02 Score=21.44 Aligned_cols=39 Identities=3% Similarity=-0.125 Sum_probs=30.4
Q ss_pred hcCCCCh-HHHHHHHHHHHHHHhhcCCCceEEEEEecCceEE
Q 027555 177 NYKETSG-QETIKLAIRALLEVCSFLYFRMSLGMVITKYYEH 217 (222)
Q Consensus 177 ~~~~~ls-~ea~~l~~~~l~~~~~~d~~~~~v~~v~~~~~~~ 217 (222)
...+.++ ++|.+++..++..+..+ ..++.|.||+ .|...
T Consensus 18 ~~~~~l~~~~A~~l~~~a~~~A~~~-g~~v~IaVv~-~G~~l 57 (163)
T PRK02487 18 LVFPHFDNDDAWQLGSLLVELARER-GLPIAIDITL-NGQPL 57 (163)
T ss_pred HcCCCCCHHHHHHHHHHHHHHHHHc-CCCEEEEEEE-CCcEE
Confidence 3457899 99999999999998765 5689999886 55433
No 77
>cd04513 Glycosylasparaginase Glycosylasparaginase catalyzes the hydrolysis of the glycosylamide bond of asparagine-linked glycoproteins. This enzyme is an amidase located inside lysosomes. Mutation of this gene in humans causes a genetic disorder known as aspartylglycosaminuria (AGU). The glycosylasparaginase precursor undergoes autoproteolysis through an N-O or N-S acyl rearrangement of the peptide bond, which leads to the cleavage of a peptide bond between an Asp and a Thr. This proteolysis step generates an exposed N-terminal catalytic threonine and activates the enzyme.
Probab=22.96 E-value=4.8e+02 Score=22.24 Aligned_cols=59 Identities=19% Similarity=0.048 Sum_probs=39.7
Q ss_pred cEEEecCChHHHHHHHHh----hcCCCCh-HHHHHHHHHHHHHHhhcCCCceEEEEEecCceEE
Q 027555 159 KANATGRNSNSMREFLEK----NYKETSG-QETIKLAIRALLEVCSFLYFRMSLGMVITKYYEH 217 (222)
Q Consensus 159 ~~~a~G~g~~~~~~~Le~----~~~~~ls-~ea~~l~~~~l~~~~~~d~~~~~v~~v~~~~~~~ 217 (222)
-+.++|.|..+++..+-. +.+..++ +||.+.+++-+......+....-+..|+.+|--.
T Consensus 186 a~s~TG~GE~iir~~~A~~v~~~m~~G~~~~~A~~~~i~~~~~~~~~~~~~gg~Iavd~~G~~~ 249 (263)
T cd04513 186 AAAATGDGEEMMRFLPSFQAVEYMRQGMSPKEACLEAIKRIAKHFDGPDFEGAVVALNKKGEYG 249 (263)
T ss_pred EEEeeccHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHcCcCCCcEEEEEEcCCCCEE
Confidence 467899999888776553 3345788 9988888777665553334455666677776543
No 78
>COG4537 ComGC Competence protein ComGC [Intracellular trafficking and secretion]
Probab=22.00 E-value=1.9e+02 Score=20.91 Aligned_cols=28 Identities=7% Similarity=0.226 Sum_probs=21.5
Q ss_pred HHHHHHHHHHHHHHhhhhcCC-CCCHHHH
Q 027555 81 ARVLINRARIECQSHRLTVED-PVTVEYI 108 (222)
Q Consensus 81 ~~~l~~~~~~~~~~~~~~~~~-~i~~~~l 108 (222)
+..+++.++.+++.|++.+++ +++.+.|
T Consensus 49 c~A~vkmV~sQ~~~YeLdh~~~~pSl~~L 77 (107)
T COG4537 49 CEAVVKMVESQAEAYELDHNRLPPSLSDL 77 (107)
T ss_pred HHHHHHHHHHHHHHHHhccCCCCCCHHHH
Confidence 455778888899999999988 6665553
No 79
>PF10632 He_PIG_assoc: He_PIG associated, NEW1 domain of bacterial glycohydrolase; InterPro: IPR019599 This domain has been named NEW1 but its actual function is not known. It is found on proteins which are bacterial galactosidases []. The domain is associated with IPR008009 from INTERPRO, a putative Ig-containing domain.
Probab=21.91 E-value=1.1e+02 Score=16.74 Aligned_cols=22 Identities=32% Similarity=0.628 Sum_probs=16.5
Q ss_pred eeEEEEEeCCCCccEEEEECCCCc
Q 027555 131 STLIVGFDPYTGVPSLYQTDPSGT 154 (222)
Q Consensus 131 ~~ivaG~d~~~~gp~ly~iD~~G~ 154 (222)
+..+.|.-+ +.|.||.|-.+|.
T Consensus 5 ~~~v~G~rP--g~pfl~~IpatG~ 26 (29)
T PF10632_consen 5 SPRVFGARP--GSPFLFTIPATGE 26 (29)
T ss_pred cCcEEcccC--CCcEEEEeeccCc
Confidence 345667764 7899999988875
No 80
>COG1387 HIS2 Histidinol phosphatase and related hydrolases of the PHP family [Amino acid transport and metabolism / General function prediction only]
Probab=21.86 E-value=95 Score=25.76 Aligned_cols=28 Identities=32% Similarity=0.402 Sum_probs=25.5
Q ss_pred eeeCCCCccchhhhHHHHHhcCCcEEEEE
Q 027555 9 TVFSPDGHLFQVEYALEAVRKGNAAVGVR 37 (222)
Q Consensus 9 ~~fsp~G~l~q~eya~~a~~~G~t~igi~ 37 (222)
|.|| +|.....|++.+|...|-..+++.
T Consensus 9 T~~s-dg~~~~~e~~~~A~~~g~~~~~iT 36 (237)
T COG1387 9 TVFS-DGEATPEEMVEAAIELGLEYIAIT 36 (237)
T ss_pred cccc-cCCCCHHHHHHHHHHcCCeEEEEe
Confidence 6788 999999999999999999998885
No 81
>KOG3087 consensus Serine/threonine protein kinase [General function prediction only]
Probab=21.79 E-value=2.6e+02 Score=23.07 Aligned_cols=46 Identities=20% Similarity=0.259 Sum_probs=29.4
Q ss_pred ccEEEEECCCCceecccEEEecCChHHHHHHHHhhcCCCChHHH-HHHHH
Q 027555 143 VPSLYQTDPSGTFSAWKANATGRNSNSMREFLEKNYKETSGQET-IKLAI 191 (222)
Q Consensus 143 gp~ly~iD~~G~~~~~~~~a~G~g~~~~~~~Le~~~~~~ls~ea-~~l~~ 191 (222)
-|.||.+|+.+...-..+. -|+..+..++.+.-.+..+++. .+++.
T Consensus 74 ~P~l~~~D~~~~~i~ME~~---~g~~~vk~~i~~~~~~~~~d~~~~~~~~ 120 (229)
T KOG3087|consen 74 APRLIFIDTYGGQIYMEFI---DGASTVKDFILSTMEDESEDEGLAELAR 120 (229)
T ss_pred CceEEEEecCCCeEEEEec---cchhHHHHHHHHHccCcccchhHHHHHH
Confidence 5999999999998876655 5555666666555544444333 34443
No 82
>PRK08123 histidinol-phosphatase; Reviewed
Probab=21.72 E-value=1.3e+02 Score=25.29 Aligned_cols=39 Identities=21% Similarity=0.253 Sum_probs=30.0
Q ss_pred CCCCCCCCe-eeCCCCcc-chhhhHHHHHhcCCcEEEEEeC
Q 027555 1 MARYDRAIT-VFSPDGHL-FQVEYALEAVRKGNAAVGVRGT 39 (222)
Q Consensus 1 ~~~yd~~~~-~fsp~G~l-~q~eya~~a~~~G~t~igi~~~ 39 (222)
||.+|.+.. .||+.|.- .--||+..|+.+|-..+||.-.
T Consensus 1 ~m~~D~H~HT~~s~h~~~~~~e~~v~~Ai~~Gl~~i~~tdH 41 (270)
T PRK08123 1 MMKRDGHTHTPFCPHGSKDDLEAYIERAIELGFTEITFTEH 41 (270)
T ss_pred CCccccccCCCCCCCCCCCCHHHHHHHHHHcCCcEEEEecc
Confidence 666777764 67887753 4467999999999999998754
No 83
>COG4728 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=20.67 E-value=1.1e+02 Score=22.22 Aligned_cols=30 Identities=17% Similarity=0.299 Sum_probs=26.6
Q ss_pred EEEecCcEEEEEeccHHHHHHHHHHHHHHH
Q 027555 63 IVSLDNHIALACAGLKADARVLINRARIEC 92 (222)
Q Consensus 63 i~~i~~~i~~~~sG~~~D~~~l~~~~~~~~ 92 (222)
++.|-+..++.+.|..+|.-.+.++.++..
T Consensus 10 ~~~i~~~~gl~~v~~~~~~s~~~~k~~~~~ 39 (124)
T COG4728 10 IFKIKDKLGLTFVSKSADMSIQVEKAERLI 39 (124)
T ss_pred EEEEhhhcCcEEEEecchhHHHHHHHHHhh
Confidence 789999999999999999999998887643
No 84
>PF14134 DUF4301: Domain of unknown function (DUF4301)
Probab=20.21 E-value=2.2e+02 Score=26.60 Aligned_cols=31 Identities=19% Similarity=0.342 Sum_probs=19.4
Q ss_pred CccceeeeEEEEEeCCCCccEEEEECCCCcee
Q 027555 125 VRPFGLSTLIVGFDPYTGVPSLYQTDPSGTFS 156 (222)
Q Consensus 125 ~rP~~v~~ivaG~d~~~~gp~ly~iD~~G~~~ 156 (222)
-||+.|..+|=-.-+ .||+--+..|++|+..
T Consensus 374 nRPiRVCGMVkNeGE-PGGGPFwv~~~dG~~S 404 (513)
T PF14134_consen 374 NRPIRVCGMVKNEGE-PGGGPFWVKNEDGTVS 404 (513)
T ss_pred CCCceeeeccccCCC-CCCCCeEEECCCCCEe
Confidence 489988766653332 3444446678888864
No 85
>PRK15392 putative fumarate hydratase; Provisional
Probab=20.01 E-value=7.2e+02 Score=23.62 Aligned_cols=62 Identities=10% Similarity=0.028 Sum_probs=38.6
Q ss_pred HHHHHHHHHHhhcccCCCccceeeeEEEEEeCCC---CccEEEEECC-CCceecccEEEecCChHHH
Q 027555 108 ITRYIAGLQQKYTQSGGVRPFGLSTLIVGFDPYT---GVPSLYQTDP-SGTFSAWKANATGRNSNSM 170 (222)
Q Consensus 108 la~~ls~~~~~~~~~~~~rP~~v~~ivaG~d~~~---~gp~ly~iD~-~G~~~~~~~~a~G~g~~~~ 170 (222)
+...|++=.++-++...+||-.|.. +.++++.+ +-|....++. .|...+..+.+-|.||...
T Consensus 126 ~~eai~eGV~~ay~~~~LR~S~V~p-l~~~~r~NTgdNtpa~I~~~~v~Gd~~~i~~~~KGgGSeN~ 191 (550)
T PRK15392 126 DAEALSKGIYSTFQENNLRFSQNAP-LDMYTEVNTQTNLPAQIDISAVAGDEYHFLCVNKGGGSANK 191 (550)
T ss_pred HHHHHHHHHHHHhccCCCchhhccC-CCccccccCCCCcccEEEEEEcCCCEEEEEEEecCCCcccH
Confidence 5555666655555566677777766 44455411 2244444433 2888899999999999543
Done!