Query 027555
Match_columns 222
No_of_seqs 127 out of 1092
Neff 8.2
Searched_HMMs 29240
Date Mon Mar 25 19:48:39 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/027555.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/027555hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1ryp_A 20S proteasome; multica 100.0 2.3E-61 8E-66 403.2 25.9 215 2-217 1-226 (243)
2 1iru_B 20S proteasome; cell cy 100.0 1E-60 3.5E-65 397.0 26.8 215 1-217 2-219 (233)
3 1yar_A Proteasome alpha subuni 100.0 4.2E-60 1.4E-64 393.3 27.2 210 3-214 7-219 (233)
4 1iru_D 20S proteasome; cell cy 100.0 1.8E-60 6.1E-65 399.0 24.9 214 1-216 1-218 (248)
5 1iru_A 20S proteasome; cell cy 100.0 1.2E-59 4E-64 393.6 28.5 218 2-220 7-230 (246)
6 3h4p_A Proteasome subunit alph 100.0 3.3E-60 1.1E-64 400.4 24.2 212 1-214 9-222 (264)
7 1ryp_C 20S proteasome; multica 100.0 1.3E-59 4.6E-64 392.8 27.4 213 2-215 3-222 (244)
8 1ryp_G 20S proteasome; multica 100.0 2.9E-59 9.9E-64 390.8 28.2 215 2-218 2-226 (244)
9 1iru_G 20S proteasome; cell cy 100.0 1.4E-59 4.7E-64 394.9 25.5 211 2-213 5-219 (254)
10 1iru_C 20S proteasome; cell cy 100.0 2.4E-59 8.2E-64 394.9 26.9 214 1-215 2-221 (261)
11 3nzj_F Proteasome component C1 100.0 3.3E-59 1.1E-63 398.1 26.9 209 2-212 6-221 (288)
12 1ryp_D 20S proteasome; multica 100.0 7.7E-59 2.6E-63 387.6 28.1 213 3-216 1-220 (241)
13 1j2p_A Alpha-ring, proteasome 100.0 2.3E-58 7.8E-63 385.8 28.3 212 3-217 7-223 (246)
14 1ryp_B 20S proteasome; multica 100.0 1.8E-58 6E-63 387.4 27.4 212 1-213 2-217 (250)
15 1iru_E 20S proteasome; cell cy 100.0 1E-58 3.5E-63 386.8 25.7 211 3-215 7-225 (241)
16 1ryp_F 20S proteasome; multica 100.0 8.1E-59 2.8E-63 385.6 23.9 211 2-217 3-223 (233)
17 1ryp_E 20S proteasome; multica 100.0 2.5E-58 8.6E-63 384.6 25.5 210 5-215 1-219 (242)
18 1iru_F 20S proteasome; cell cy 100.0 3.7E-58 1.3E-62 387.9 25.9 212 2-217 4-223 (263)
19 1q5q_A Proteasome alpha-type s 100.0 8.7E-49 3E-53 330.0 21.9 198 8-214 4-215 (259)
20 3mi0_A Proteasome subunit alph 100.0 9.3E-47 3.2E-51 315.4 25.8 187 19-214 16-217 (248)
21 1ryp_H 20S proteasome; multica 100.0 1.8E-45 6.1E-50 299.8 21.8 190 24-220 3-197 (205)
22 1iru_M 20S proteasome; cell cy 100.0 1E-44 3.6E-49 296.8 24.8 189 27-220 6-208 (213)
23 3h4p_a Proteasome subunit beta 100.0 4.3E-45 1.5E-49 300.4 22.4 184 30-218 1-190 (219)
24 3nzj_K Proteasome component PR 100.0 7.2E-45 2.5E-49 309.6 23.6 202 12-218 51-263 (287)
25 1yar_H Proteasome beta subunit 100.0 1.8E-44 6.3E-49 296.3 24.1 186 25-217 3-194 (217)
26 1iru_N 20S proteasome; cell cy 100.0 5.8E-45 2E-49 299.5 20.5 189 25-217 3-199 (219)
27 1ryp_K 20S proteasome; multica 100.0 3.9E-44 1.3E-48 290.2 24.2 187 30-218 1-192 (198)
28 1j2q_H Proteasome beta subunit 100.0 5.6E-44 1.9E-48 290.2 24.8 181 31-217 1-187 (202)
29 1ryp_N 20S proteasome; multica 100.0 7.1E-45 2.4E-49 301.7 19.6 191 25-218 3-209 (233)
30 1iru_H 20S proteasome; cell cy 100.0 4.5E-44 1.5E-48 291.4 23.8 185 31-221 1-190 (205)
31 1ryp_M 20S proteasome; multica 100.0 7.6E-44 2.6E-48 293.6 24.4 189 27-220 6-217 (222)
32 1iru_J 20S proteasome; cell cy 100.0 8.4E-44 2.9E-48 289.8 24.4 191 27-221 5-201 (205)
33 2jay_A Proteasome; hydrolase; 100.0 2.7E-44 9.1E-49 306.8 21.7 213 2-217 23-261 (291)
34 3nzj_H Proteasome component PU 100.0 1.1E-43 3.8E-48 298.8 25.1 185 23-214 22-211 (261)
35 1q5r_H Proteasome beta-type su 100.0 3.6E-44 1.2E-48 306.2 22.2 193 23-217 58-269 (294)
36 1ryp_L 20S proteasome; multica 100.0 1.3E-43 4.5E-48 290.1 23.9 182 31-217 1-187 (212)
37 1ryp_J 20S proteasome; multica 100.0 2.5E-43 8.7E-48 286.7 25.3 189 27-220 5-199 (204)
38 1iru_L 20S proteasome; cell cy 100.0 3E-43 1E-47 286.4 23.1 181 31-217 1-186 (204)
39 1g0u_M Proteasome component PR 100.0 3.5E-44 1.2E-48 303.0 18.1 197 19-218 30-242 (266)
40 1iru_K 20S proteasome; cell cy 100.0 4.7E-43 1.6E-47 284.5 22.9 186 30-218 1-191 (201)
41 3unf_H Proteasome subunit beta 100.0 7E-43 2.4E-47 289.8 24.4 181 31-218 1-186 (234)
42 1q5q_H Proteasome beta-type su 100.0 7E-43 2.4E-47 290.1 22.6 185 31-217 1-204 (235)
43 1ryp_I 20S proteasome; multica 100.0 3.2E-42 1.1E-46 283.8 24.8 180 31-217 1-186 (222)
44 1iru_I 20S proteasome; cell cy 100.0 2.6E-41 8.8E-46 280.5 23.9 179 31-216 1-184 (234)
45 3unf_N Proteasome subunit beta 100.0 1.1E-41 3.7E-46 276.0 20.9 183 31-221 1-189 (199)
46 2z3b_A ATP-dependent protease 100.0 2.5E-35 8.4E-40 235.4 18.6 165 28-210 3-179 (180)
47 1g3k_A ATP-dependent protease 100.0 2.5E-34 8.6E-39 228.3 19.2 163 31-211 1-173 (174)
48 1m4y_A ATP-dependent protease 100.0 3.6E-34 1.2E-38 226.7 19.7 162 31-209 1-170 (171)
49 3jx9_A Putative phosphoheptose 48.2 12 0.00042 28.4 2.9 31 8-38 81-112 (170)
50 3fpw_A HBPS, extracellular HAE 35.0 78 0.0027 24.5 5.7 40 179-219 62-102 (192)
51 2yxo_A Histidinol phosphatase; 32.9 30 0.001 27.3 3.1 32 9-40 8-39 (267)
52 2a2l_A Unknown; structural gen 31.1 47 0.0016 24.3 3.7 37 180-217 10-47 (145)
53 3rj2_X ORF158L protein, putati 25.0 19 0.00066 25.7 0.5 17 3-19 54-70 (138)
54 4gof_A Small glutamine-rich te 22.8 1.3E+02 0.0045 18.0 3.9 32 170-201 9-44 (52)
55 4eo3_A Bacterioferritin comigr 21.0 31 0.0011 28.7 1.1 45 143-187 102-148 (322)
No 1
>1ryp_A 20S proteasome; multicatalytic proteinase, protein degradation, antigen processing, hydrolase, protease; 1.90A {Saccharomyces cerevisiae} SCOP: d.153.1.4 PDB: 1jd2_G* 1g65_G 1vsy_A 2f16_G* 2fak_G* 2fny_G* 2gpl_G* 3d29_G* 3dy3_G* 3dy4_G* 3e47_G* 3gpj_G* 3gpt_G* 3gpw_G* 3hye_G* 3l5q_A 3mg0_G* 3mg4_G* 3oeu_G* 3oev_G* ...
Probab=100.00 E-value=2.3e-61 Score=403.23 Aligned_cols=215 Identities=31% Similarity=0.498 Sum_probs=207.5
Q ss_pred CCCCCCCeeeCCCCccchhhhHHHHHhc-CCcEEEEEeCCEEEEEEeecccccccccCccccEEEecCcEEEEEeccHHH
Q 027555 2 ARYDRAITVFSPDGHLFQVEYALEAVRK-GNAAVGVRGTDTIVLGVEKKSTVKLQDSRSVRKIVSLDNHIALACAGLKAD 80 (222)
Q Consensus 2 ~~yd~~~~~fsp~G~l~q~eya~~a~~~-G~t~igi~~~dgVvla~d~~~~~~l~~~~~~~Ki~~i~~~i~~~~sG~~~D 80 (222)
++||+.+|+|||||||+|+|||+||+++ |+|+|||+++||||||+|+|.+.+++.+++.+||++|++||+|+++|+.+|
T Consensus 1 ~~yd~~~t~fsp~Grl~QvEYA~~av~~~Gtt~vgi~~~dgVvlaad~r~~~~l~~~~~~~Ki~~i~~~i~~~~aG~~aD 80 (243)
T 1ryp_A 1 AGYDRHITIFSPEGRLYQVEYAFKATNQTNINSLAVRGKDCTVVISQKKVPDKLLDPTTVSYIFCISRTIGMVVNGPIPD 80 (243)
T ss_dssp CGGGGTSSSCCTTSCCHHHHHHHHHTTTTCCCEEEEECSSEEEEEEECCCCCTTBCGGGCCSEEECSSSCEEEEESCHHH
T ss_pred CCCCCCCceECCCCeeHHHHHHHHHHhcCCCcEEEEEeCCEEEEEEEecCCccccCCCcCCceEEECCCEEEEEEecHHH
Confidence 5899999999999999999999999999 999999999999999999999977888889999999999999999999999
Q ss_pred HHHHHHHHHHHHHHhhhhcCCCCCHHHHHHHHHHHHHhhcccCCCccceeeeEEEEEeCCCCccEEEEECCCCceecccE
Q 027555 81 ARVLINRARIECQSHRLTVEDPVTVEYITRYIAGLQQKYTQSGGVRPFGLSTLIVGFDPYTGVPSLYQTDPSGTFSAWKA 160 (222)
Q Consensus 81 ~~~l~~~~~~~~~~~~~~~~~~i~~~~la~~ls~~~~~~~~~~~~rP~~v~~ivaG~d~~~~gp~ly~iD~~G~~~~~~~ 160 (222)
++.+.+.++.+++.|+++++++++++.+|+++++++|.|++++++|||+|++||||||+ ++||+||.+||+|++.++++
T Consensus 81 ~~~l~~~~r~~~~~~~~~~~~~~~v~~la~~l~~~l~~y~~~~~~rP~~v~~lvaG~D~-~~gp~Ly~~dp~G~~~~~~~ 159 (243)
T 1ryp_A 81 ARNAALRAKAEAAEFRYKYGYDMPCDVLAKRMANLSQIYTQRAYMRPLGVILTFVSVDE-ELGPSIYKTDPAGYYVGYKA 159 (243)
T ss_dssp HHHHHHHHHHHHHHHHHHHSSCCCHHHHHHHHHHHHHHHHHBTTSCCCSCEEEEEEEET-TTEEEEEEECTTSCEEEBSE
T ss_pred HHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHhccCCccccceEEEEEEEcC-CCCcEEEEEcCCCCEEEEEE
Confidence 99999999999999999999999999999999999999999988999999999999996 58999999999999999999
Q ss_pred EEecCChHHHHHHHHhhcCC-------CCh-HHHHHHHHHHHHHHhhcC--CCceEEEEEecCceEE
Q 027555 161 NATGRNSNSMREFLEKNYKE-------TSG-QETIKLAIRALLEVCSFL--YFRMSLGMVITKYYEH 217 (222)
Q Consensus 161 ~a~G~g~~~~~~~Le~~~~~-------~ls-~ea~~l~~~~l~~~~~~d--~~~~~v~~v~~~~~~~ 217 (222)
+|+|++++.++++||+.|++ +|+ +||++++++||..+++|| ..+++|.||++++++.
T Consensus 160 ~a~G~gs~~a~~~Le~~~~~~~~~~~~~ms~eea~~l~~~al~~~~~rd~s~~~iev~vi~~~g~~~ 226 (243)
T 1ryp_A 160 TATGPKQQEITTNLENHFKKSKIDHINEESWEKVVEFAITHMIDALGTEFSKNDLEVGVATKDKFFT 226 (243)
T ss_dssp EEESTTHHHHHHHHHHHHHHHCSSSCCCSSHHHHHHHHHHHHHHHHTCCCCTTSEEEEEEETTEEEE
T ss_pred EEECCCcHHHHHHHHHHhhhcccccccCCCHHHHHHHHHHHHHHHhcccCCCCcEEEEEEECCCeEE
Confidence 99999999999999999999 999 999999999999999998 5799999999998554
No 2
>1iru_B 20S proteasome; cell cycle, immune response, proteolysis, ubiquitin, hydrolase; 2.75A {Bos taurus} SCOP: d.153.1.4 PDB: 3unb_A* 3une_A 3unf_A* 3unh_A
Probab=100.00 E-value=1e-60 Score=397.00 Aligned_cols=215 Identities=40% Similarity=0.648 Sum_probs=208.0
Q ss_pred CCCCCCCCeeeCCCCccchhhhHHHHHhcCCcEEEEEeCCEEEEEEeecccccccccCccccEEEecCcEEEEEeccHHH
Q 027555 1 MARYDRAITVFSPDGHLFQVEYALEAVRKGNAAVGVRGTDTIVLGVEKKSTVKLQDSRSVRKIVSLDNHIALACAGLKAD 80 (222)
Q Consensus 1 ~~~yd~~~~~fsp~G~l~q~eya~~a~~~G~t~igi~~~dgVvla~d~~~~~~l~~~~~~~Ki~~i~~~i~~~~sG~~~D 80 (222)
+++||+.+|+|||||||+|+|||++++++|+|+|||+++||||||+|+|.+.+++.+++.+||++|+++++|+++|..+|
T Consensus 2 ~~~yd~~~t~fsp~Grl~QvEya~~av~~Gtt~vgi~~~dgVvlaaD~r~~~~l~~~~~~~Ki~~i~~~i~~~~aG~~aD 81 (233)
T 1iru_B 2 ERGYSFSLTTFSPSGKLVQIEYALAAVAGGAPSVGIKAANGVVLATEKKQKSILYDERSVHKVEPITKHIGLVYSGMGPD 81 (233)
T ss_dssp CCCCCSBSCCCCTTSCCHHHHHHHHHHHTSCCEEEEECSSCEEEEEECCCCCSSBCSTTCCSSEESSSSEEEEEEECHHH
T ss_pred CCCccCCceeECCCCeEehhHhHHHHHHcCCcEEEEEeCCEEEEEEEecCCccccccccCCeEEEECCCEEEEEEEccHH
Confidence 47899999999999999999999999999999999999999999999999988888889999999999999999999999
Q ss_pred HHHHHHHHHHHHHHhhhhcCCCCCHHHHHHHHHHHHHhhcccCCCccceeeeEEEEEeCCCCccEEEEECCCCceecccE
Q 027555 81 ARVLINRARIECQSHRLTVEDPVTVEYITRYIAGLQQKYTQSGGVRPFGLSTLIVGFDPYTGVPSLYQTDPSGTFSAWKA 160 (222)
Q Consensus 81 ~~~l~~~~~~~~~~~~~~~~~~i~~~~la~~ls~~~~~~~~~~~~rP~~v~~ivaG~d~~~~gp~ly~iD~~G~~~~~~~ 160 (222)
++.+.++++.+++.|+++++++++++.+|+++++++|.|++++++|||+|++|||||| ++||+||.+||+|++.++++
T Consensus 82 ~~~l~~~~~~~~~~~~~~~~~~~~v~~la~~l~~~~~~y~~~~~~rP~~v~~lvaG~D--~~gp~Ly~id~~G~~~~~~~ 159 (233)
T 1iru_B 82 YRVLVHRARKLAQQYYLVYQEPIPTAQLVQRVASVMQEYTQSGGVRPFGVSLLICGWN--EGRPYLFQSDPSGAYFAWKA 159 (233)
T ss_dssp HHHHHHHHHHHHHHHHHHHSSCCCHHHHHHHHHHHHHHTTTSBTBCCCSEEEEEEEEC--SSSEEEEEECTTSCEEEBSE
T ss_pred HHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHhcCcCCCCCcEEEEEEEEEe--CCCCeEEEECCCCCEEEeeE
Confidence 9999999999999999999999999999999999999999998999999999999999 57899999999999999999
Q ss_pred EEecCChHHHHHHHHhhcCCCCh-HHHHHHHHHHHHHHhhcC--CCceEEEEEecCceEE
Q 027555 161 NATGRNSNSMREFLEKNYKETSG-QETIKLAIRALLEVCSFL--YFRMSLGMVITKYYEH 217 (222)
Q Consensus 161 ~a~G~g~~~~~~~Le~~~~~~ls-~ea~~l~~~~l~~~~~~d--~~~~~v~~v~~~~~~~ 217 (222)
+++|+|+++++++||++|+++|+ +||++++++||..+.+|| ..+++|.+|++++++.
T Consensus 160 ~aiG~gs~~a~~~Le~~~~~~ms~eea~~la~~al~~~~~~d~sg~~i~v~vi~~~g~~~ 219 (233)
T 1iru_B 160 TAMGKNYVNGKTFLEKRYNEDLELEDAIHTAILTLKESFEGQMTEDNIEVGICNEAGFRR 219 (233)
T ss_dssp EEESTTHHHHHHHHHHHCCTTCCHHHHHHHHHHHHHTTCCSCCCSSSEEEEEEETTEEEE
T ss_pred EEECCCCHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHhhccCCCCCEEEEEEECCCEEE
Confidence 99999999999999999999999 999999999999999998 5799999999999765
No 3
>1yar_A Proteasome alpha subunit; proteasome 20S, PA26 proteasome activator 11S, hydrolase-HYD activator complex; 1.90A {Thermoplasma acidophilum} SCOP: d.153.1.4 PDB: 1ya7_A 1pma_A 3c91_A 3c92_A 3ipm_A 2ku1_A 2ku2_A 1yau_A 3jrm_A 3jse_A 3jtl_A
Probab=100.00 E-value=4.2e-60 Score=393.32 Aligned_cols=210 Identities=40% Similarity=0.625 Sum_probs=198.8
Q ss_pred CCCCCCeeeCCCCccchhhhHHHHHhcCCcEEEEEeCCEEEEEEeecccccccccCccccEEEecCcEEEEEeccHHHHH
Q 027555 3 RYDRAITVFSPDGHLFQVEYALEAVRKGNAAVGVRGTDTIVLGVEKKSTVKLQDSRSVRKIVSLDNHIALACAGLKADAR 82 (222)
Q Consensus 3 ~yd~~~~~fsp~G~l~q~eya~~a~~~G~t~igi~~~dgVvla~d~~~~~~l~~~~~~~Ki~~i~~~i~~~~sG~~~D~~ 82 (222)
+||+++|+|||||||+|+|||++++++|+|+|||+++||||||+|+|.+++++.+++.+||++|+++|+|++||..+|++
T Consensus 7 ~yd~~~t~fsp~Grl~QvEya~~av~~Gtt~vgi~~~dgVvlaaD~r~~~~~~~~~~~~Ki~~i~~~i~~~~aG~~aD~~ 86 (233)
T 1yar_A 7 AYSRAITVFSPDGRLFQVEYAREAVKKGSTALGMKFANGVLLISDKKVRSRLIEQNSIEKIQLIDDYVAAVTSGLVADAR 86 (233)
T ss_dssp ------CCCCTTSCCHHHHHHHHHHTTSCCEEEEEETTEEEEEECCCCCCTTBCSTTCCSEEEEETTEEEEEEEBHHHHH
T ss_pred cCCCCCceECcCCeeHHHHhHHHHHhcCCcEEEEEECCEEEEEEeccCCcccccccccCeEEEecCCEEEEEeeCHHHHH
Confidence 79999999999999999999999999999999999999999999999999888888999999999999999999999999
Q ss_pred HHHHHHHHHHHHhhhhcCCCCCHHHHHHHHHHHHHhhcccCCCccceeeeEEEEEeCCCCccEEEEECCCCceecccEEE
Q 027555 83 VLINRARIECQSHRLTVEDPVTVEYITRYIAGLQQKYTQSGGVRPFGLSTLIVGFDPYTGVPSLYQTDPSGTFSAWKANA 162 (222)
Q Consensus 83 ~l~~~~~~~~~~~~~~~~~~i~~~~la~~ls~~~~~~~~~~~~rP~~v~~ivaG~d~~~~gp~ly~iD~~G~~~~~~~~a 162 (222)
.+.++++.+++.|+++++++++++.+|+++++++|+|+++.+.|||+|++||||||+ +||+||.+||+|++.+++++|
T Consensus 87 ~l~~~~~~~~~~~~~~~~~~~~v~~~a~~l~~~~~~~~~~~~~rp~~v~~lvaG~D~--~gp~Ly~id~~G~~~~~~~~a 164 (233)
T 1yar_A 87 VLVDFARISAQQEKVTYGSLVNIENLVKRVADQMQQYTQYGGVRPYGVSLIFAGIDQ--IGPRLFDCDPAGTINEYKATA 164 (233)
T ss_dssp HHHHHHHHHHHHHHHHHSSCCCHHHHHHHHHHHHHHTTTBTTBCCCCEEEEEEEECS--SCEEEEEECTTCCEEEBSEEE
T ss_pred HHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHhcCcCCcCcceEEEEEEEEeC--CCCEEEEECCCCCEEeeeEEE
Confidence 999999999999999999999999999999999999999989999999999999994 789999999999999999999
Q ss_pred ecCChHHHHHHHHhhcCCCCh-HHHHHHHHHHHHHHhhcC--CCceEEEEEecCc
Q 027555 163 TGRNSNSMREFLEKNYKETSG-QETIKLAIRALLEVCSFL--YFRMSLGMVITKY 214 (222)
Q Consensus 163 ~G~g~~~~~~~Le~~~~~~ls-~ea~~l~~~~l~~~~~~d--~~~~~v~~v~~~~ 214 (222)
+|+|+++++++||++|+++|+ +||++++++||..+.+|| ..+++|.+|++++
T Consensus 165 iG~gs~~a~~~Le~~~~~~~s~eea~~la~~al~~~~~~d~s~~~i~v~vi~~~~ 219 (233)
T 1yar_A 165 IGSGKDAVVSFLEREYKENLPEKEAVTLGIKALKSSLEEGEELKAPEIASITVGN 219 (233)
T ss_dssp ESTTHHHHHHHHHHHCCTTCCHHHHHHHHHHHHHHTSCSSCCCCCCEEEEEETTS
T ss_pred EcCCcHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHhhccCCCCcEEEEEEECCC
Confidence 999999999999999999999 999999999999999998 6899999999887
No 4
>1iru_D 20S proteasome; cell cycle, immune response, proteolysis, ubiquitin, hydrolase; 2.75A {Bos taurus} SCOP: d.153.1.4 PDB: 3unf_C* 3une_C* 3unh_C 3unb_C*
Probab=100.00 E-value=1.8e-60 Score=399.02 Aligned_cols=214 Identities=68% Similarity=1.034 Sum_probs=205.9
Q ss_pred CCCCCCCCeeeCCCCccchhhhHHHHHhcCCcEEEEEeCCEEEEEEeecccccccccCccccEEEecCcEEEEEeccHHH
Q 027555 1 MARYDRAITVFSPDGHLFQVEYALEAVRKGNAAVGVRGTDTIVLGVEKKSTVKLQDSRSVRKIVSLDNHIALACAGLKAD 80 (222)
Q Consensus 1 ~~~yd~~~~~fsp~G~l~q~eya~~a~~~G~t~igi~~~dgVvla~d~~~~~~l~~~~~~~Ki~~i~~~i~~~~sG~~~D 80 (222)
|+ ||+.+|+|||||||+|+|||++|+++|+|+|||+++||||||+|+|.+++++.+++.+||++|++||+|+++|..+|
T Consensus 1 ~~-yd~~~t~fsp~Grl~QvEYA~~av~~Gtt~vgi~~~dgVvlaaD~r~~~~l~~~~~~~KI~~i~~~i~~~~aG~~aD 79 (248)
T 1iru_D 1 MS-YDRAITVFSPDGHLFQVEYAQEAVKKGSTAVGVRGRDIVVLGVEKKSVAKLQDERTVRKICALDDNVCMAFAGLTAD 79 (248)
T ss_dssp -C-CCCCCSCCCTTSCCHHHHHHHHHHHTSCCEEEECCSSEEEEEECCCCCCSSSCGGGGCSEEESSSSCEEEEEECHHH
T ss_pred CC-ccCCCceECCCCcchHHHHHHHHHHcCCCEEEEEeCCEEEEEEeecccccCccCCCCCcEEEEcCCEEEEEeecHHH
Confidence 55 99999999999999999999999999999999999999999999999998877888999999999999999999999
Q ss_pred HHHHHHHHHHHHHHhhhhcCCCCCHHHHHHHHHHHHHhhcccCCCccceeeeEEEEEeCCCCccEEEEECCCCceecccE
Q 027555 81 ARVLINRARIECQSHRLTVEDPVTVEYITRYIAGLQQKYTQSGGVRPFGLSTLIVGFDPYTGVPSLYQTDPSGTFSAWKA 160 (222)
Q Consensus 81 ~~~l~~~~~~~~~~~~~~~~~~i~~~~la~~ls~~~~~~~~~~~~rP~~v~~ivaG~d~~~~gp~ly~iD~~G~~~~~~~ 160 (222)
++.+.+.++.+++.|+++++++++++.+|+++++++|.|+++++.|||+|++||||||+ ++||+||.+||+|++.++++
T Consensus 80 ~~~l~~~~~~~~~~~~~~~~~~~~v~~la~~l~~~~~~~~~~~~~rp~~v~~lvaG~D~-~~gp~Ly~idp~G~~~~~~~ 158 (248)
T 1iru_D 80 ARIVINRARVECQSHRLTVEDPVTVEYITRYIASLKQRYTQSNGRRPFGISALIVGFDF-DGTPRLYQTDPSGTYHAWKA 158 (248)
T ss_dssp HHHHHHHHHHHHHHHHHHSSSCCCHHHHHHHHHHHHHHTTSBTTBCCCCEEEEEEEECS-SSCEEEEEECTTSCEEEBSE
T ss_pred HHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHhccCCcccccEEEEEEEEeC-CCCcEEEEEcCCCcEEEeeE
Confidence 99999999999999999999999999999999999999999988999999999999996 67999999999999999999
Q ss_pred EEecCChHHHHHHHHhhcCCCC--h-HHHHHHHHHHHHHHhhcCCCceEEEEEecCc-eE
Q 027555 161 NATGRNSNSMREFLEKNYKETS--G-QETIKLAIRALLEVCSFLYFRMSLGMVITKY-YE 216 (222)
Q Consensus 161 ~a~G~g~~~~~~~Le~~~~~~l--s-~ea~~l~~~~l~~~~~~d~~~~~v~~v~~~~-~~ 216 (222)
+|+|+|+++++++||++|+++| + +||++++++||..+.+....+++|.+|++++ ++
T Consensus 159 ~aiG~gs~~a~~~Le~~~~~~m~~s~eea~~la~~al~~~~~~sg~~i~v~vi~~~g~~~ 218 (248)
T 1iru_D 159 NAIGRGAKSVREFLEKNYTDEAIETDDLTIKLVIKALLEVVQSGGKNIELAVMRRDQSLK 218 (248)
T ss_dssp EEESTTHHHHHHHHTTTCCSSTTCSHHHHHHHHHHHHHTTSCTTSTTCCEEEEESSSCEE
T ss_pred EEECCCcHHHHHHHHHhhcccccCCHHHHHHHHHHHHHHHHcCCCCcEEEEEEECCCcEE
Confidence 9999999999999999999999 9 9999999999999998778899999999887 44
No 5
>1iru_A 20S proteasome; cell cycle, immune response, proteolysis, ubiquitin, hydrolase; 2.75A {Bos taurus} SCOP: d.153.1.4 PDB: 3unb_G* 3une_G 3unf_G* 3unh_G
Probab=100.00 E-value=1.2e-59 Score=393.58 Aligned_cols=218 Identities=33% Similarity=0.557 Sum_probs=208.4
Q ss_pred CCCCCCCeeeCCCCccchhhhHHHHHhc-CCcEEEEEeCCEEEEEEeecccccccccCccccEEEecCcEEEEEeccHHH
Q 027555 2 ARYDRAITVFSPDGHLFQVEYALEAVRK-GNAAVGVRGTDTIVLGVEKKSTVKLQDSRSVRKIVSLDNHIALACAGLKAD 80 (222)
Q Consensus 2 ~~yd~~~~~fsp~G~l~q~eya~~a~~~-G~t~igi~~~dgVvla~d~~~~~~l~~~~~~~Ki~~i~~~i~~~~sG~~~D 80 (222)
++||+++|+|||||||+|+|||++++++ |+|+|||+++||||||+|+|.+.+++.+++.+||++|+++|+|+++|..+|
T Consensus 7 ~~yd~~~t~fsp~Grl~QvEya~~av~~~Gtt~vgi~~~dgVvlaaD~r~~~~l~~~~~~~Ki~~i~~~i~~~~aG~~aD 86 (246)
T 1iru_A 7 AGFDRHITIFSPEGRLYQVEYAFKAINQGGLTSVAVRGKDCAVIVTQKKVPDKLLDSSTVTHLFKITENIGCVMTGMTAD 86 (246)
T ss_dssp CTTTTTSSCCCTTSCCHHHHHHHHHHHTTCCEEEEEECSSEEEEEEECCCCCSSBCGGGCCSEEESSSSCEEEEEECHHH
T ss_pred CCcCCCCccCCCCCeehHHHHHHHHHhcCCCCEEEEEeCCEEEEEEeecCCCcccCCCccCceEEECCCEEEEEeccHHH
Confidence 4799999999999999999999999998 999999999999999999999987888889999999999999999999999
Q ss_pred HHHHHHHHHHHHHHhhhhcCCCCCHHHHHHHHHHHHHhhcccCCCccceeeeEEEEEeCCCCccEEEEECCCCceecccE
Q 027555 81 ARVLINRARIECQSHRLTVEDPVTVEYITRYIAGLQQKYTQSGGVRPFGLSTLIVGFDPYTGVPSLYQTDPSGTFSAWKA 160 (222)
Q Consensus 81 ~~~l~~~~~~~~~~~~~~~~~~i~~~~la~~ls~~~~~~~~~~~~rP~~v~~ivaG~d~~~~gp~ly~iD~~G~~~~~~~ 160 (222)
++.+.++++.+++.|+++++++++++.+|+++++++|.|+++.++|||+|++||||||+ ++||+||.+||+|++.++++
T Consensus 87 ~~~l~~~~~~~~~~~~~~~~~~~~~~~la~~l~~~~~~y~~~~~~rp~~v~~lvaG~D~-~~gp~Ly~idp~G~~~~~~~ 165 (246)
T 1iru_A 87 SRSQVQRARYEAANWKYKYGYEIPVDMLCKRIADISQVYTQNAEMRPLGCCMILIGIDE-EQGPQVYKCDPAGYYCGFKA 165 (246)
T ss_dssp HHHHHHHHHHHHHHHHHHHSSCCCHHHHHHHHHHHHHHHHHBSSBCCCSEEEEEEEEET-TTEEEEEEECTTSCEEEBSE
T ss_pred HHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHhcCCCCCCcceEEEEEEEeC-CCCeEEEEEcCCeeEEEeeE
Confidence 99999999999999999999999999999999999999999888999999999999996 58999999999999999999
Q ss_pred EEecCChHHHHHHHHhhcCC--CCh-HHHHHHHHHHHHHHhhcC--CCceEEEEEecCceEEeee
Q 027555 161 NATGRNSNSMREFLEKNYKE--TSG-QETIKLAIRALLEVCSFL--YFRMSLGMVITKYYEHLYY 220 (222)
Q Consensus 161 ~a~G~g~~~~~~~Le~~~~~--~ls-~ea~~l~~~~l~~~~~~d--~~~~~v~~v~~~~~~~~~~ 220 (222)
+|+|+|+++++++||++|++ +|+ +||++++++||..+.+|| ..+++|.+|++++.+...+
T Consensus 166 ~aiG~gs~~a~~~Le~~~~~~~~ms~eea~~la~~al~~~~~rd~sg~~i~v~vi~~~g~~~~~l 230 (246)
T 1iru_A 166 TAAGVKQTESTSFLEKKVKKKFDWTFEQTVETAITCLSTVLSIDFKPSEIEVGVVTVENPKFRIL 230 (246)
T ss_dssp EEEETTHHHHHHHHHHHTTSCCCCCHHHHHHHHHHHHHHHTTCCCCTTSEEEEEEETTEEEEEEC
T ss_pred EEECCCcHHHHHHHHHhhcccCCCCHHHHHHHHHHHHHHHhcccCCCCcEEEEEEECCCCeEEEC
Confidence 99999999999999999999 999 999999999999999998 6799999999998744333
No 6
>3h4p_A Proteasome subunit alpha; core particle, cytoplasm, hydrolase, protease, threonine protease; 4.10A {Methanocaldococcus jannaschii}
Probab=100.00 E-value=3.3e-60 Score=400.44 Aligned_cols=212 Identities=45% Similarity=0.714 Sum_probs=198.2
Q ss_pred CCCCCCCCeeeCCCCccchhhhHHHHHhcCCcEEEEEeCCEEEEEEeecccccccccCccccEEEecCcEEEEEeccHHH
Q 027555 1 MARYDRAITVFSPDGHLFQVEYALEAVRKGNAAVGVRGTDTIVLGVEKKSTVKLQDSRSVRKIVSLDNHIALACAGLKAD 80 (222)
Q Consensus 1 ~~~yd~~~~~fsp~G~l~q~eya~~a~~~G~t~igi~~~dgVvla~d~~~~~~l~~~~~~~Ki~~i~~~i~~~~sG~~~D 80 (222)
+++||+++|+|||||||+|||||++|+++|+|+|||+++||||||+|+|.+++++.+++.+||++|++||+|+++|+.+|
T Consensus 9 ~~~yd~~~t~fSp~Grl~QvEYA~~av~~Gtt~vgi~~~dgVVlaaD~r~~~~li~~~~~~KI~~i~d~i~~~~aG~~aD 88 (264)
T 3h4p_A 9 PSAYDRAITVFSPEGRLYQVEYAREAVRRGTTAIGIACKDGVVLAVDRRITSKLVKIRSIEKIFQIDDHVAAATSGLVAD 88 (264)
T ss_dssp -------CCCCCSSSSCHHHHHHHHHHHHSCCEEEECCSSEEEEEEECCCCSTTBCTTTCCCEEEEETTEEEEEEECSHH
T ss_pred ccccCCCcceECCCCeeHHHHhHHHHHhcCCcEEEEEECCEEEEEEecCccCCccccCccccEEEecCcEEEEeccchHH
Confidence 36899999999999999999999999999999999999999999999999998888889999999999999999999999
Q ss_pred HHHHHHHHHHHHHHhhhhcCCCCCHHHHHHHHHHHHHhhcccCCCccceeeeEEEEEeCCCCccEEEEECCCCceecccE
Q 027555 81 ARVLINRARIECQSHRLTVEDPVTVEYITRYIAGLQQKYTQSGGVRPFGLSTLIVGFDPYTGVPSLYQTDPSGTFSAWKA 160 (222)
Q Consensus 81 ~~~l~~~~~~~~~~~~~~~~~~i~~~~la~~ls~~~~~~~~~~~~rP~~v~~ivaG~d~~~~gp~ly~iD~~G~~~~~~~ 160 (222)
++.+++.++.+++.|+++++++++++.+|+++++++|.|++++++|||+|++|||||| ++||+||.+||+|++.++++
T Consensus 89 ~~~l~~~~r~~~~~y~~~~~~~i~v~~la~~l~~~~~~yt~~~~~rP~~v~~lvaG~D--~~gp~Ly~iDp~G~~~~~~~ 166 (264)
T 3h4p_A 89 ARVLIDRARLEAQIYRLTYGEEISIEMLAKKICDIKQAYTQHGGVRPFGVSLLIAGID--KNEARLFETDPSGALIEYKA 166 (264)
T ss_dssp HHHHHTTHHHHHHHHHHTTCSCCCHHHHHHHHHHHHHHTTSBSSCCCCSEEEEEEEEE--TTEEEEEEECTTCCCEEESE
T ss_pred HHHHHHHHHHHHHhhHHhcCCCCCHHHHHHHHHHHHHHHhhccCCCCeeEEEEEEEEe--CCcCEEEEECCCceEEecCe
Confidence 9999999999999999999999999999999999999999999999999999999999 47899999999999999999
Q ss_pred EEecCChHHHHHHHHhhcCCCCh-HHHHHHHHHHHHHHhhc-CCCceEEEEEecCc
Q 027555 161 NATGRNSNSMREFLEKNYKETSG-QETIKLAIRALLEVCSF-LYFRMSLGMVITKY 214 (222)
Q Consensus 161 ~a~G~g~~~~~~~Le~~~~~~ls-~ea~~l~~~~l~~~~~~-d~~~~~v~~v~~~~ 214 (222)
+|+|+|+++++++||+.|+++|+ +||++++++||..++++ ...+++|.||+.++
T Consensus 167 ~aiGsgs~~a~~~Le~~~~~~ms~eea~~la~~al~~a~~~~sg~~iev~vi~~~~ 222 (264)
T 3h4p_A 167 TAIGSGRPVVMELLEKEYRDDITLDEGLELAITALTKANEDIKPENVDVCIITVKD 222 (264)
T ss_dssp EEESTTHHHHTTTHHHHCCTTCCSHHHHHHHHHHHHHHSSSCCTTSEEEEEEETTT
T ss_pred EEECCCHHHHHHHHHHhccCCCCHHHHHHHHHHHHHHHHhccCCCeEEEEEEEeCC
Confidence 99999999999999999999999 99999999999999986 36799999998653
No 7
>1ryp_C 20S proteasome; multicatalytic proteinase, protein degradation, antigen processing, hydrolase, protease; 1.90A {Saccharomyces cerevisiae} SCOP: d.153.1.4 PDB: 1jd2_B* 1g65_B 2f16_B* 2fak_B* 2fny_B* 2gpl_B* 3d29_B* 3dy3_B* 3dy4_B* 3e47_B* 3gpj_B* 3gpt_B* 3gpw_B* 3hye_B* 3mg0_B* 3mg4_B* 3okj_B* 3shj_B* 3tdd_B* 3nzj_B* ...
Probab=100.00 E-value=1.3e-59 Score=392.76 Aligned_cols=213 Identities=38% Similarity=0.663 Sum_probs=205.0
Q ss_pred CCCCCCCeeeCCCCccchhhhHHHHHhcCCcEEEEEeCCEEEEEEeecccccccc-cCccccEEEecCcEEEEEeccHHH
Q 027555 2 ARYDRAITVFSPDGHLFQVEYALEAVRKGNAAVGVRGTDTIVLGVEKKSTVKLQD-SRSVRKIVSLDNHIALACAGLKAD 80 (222)
Q Consensus 2 ~~yd~~~~~fsp~G~l~q~eya~~a~~~G~t~igi~~~dgVvla~d~~~~~~l~~-~~~~~Ki~~i~~~i~~~~sG~~~D 80 (222)
++||+.+|+|||||||+|+|||++++++|+|+|||+++||||||+|+|.++++.. +++.+||++|+++|+|++||..+|
T Consensus 3 ~~yd~~~t~fsp~Grl~QvEyA~~av~~Gtt~vgi~~~dgVvlaaD~r~~~g~~~~~~~~~Ki~~i~~~i~~~~aG~~aD 82 (244)
T 1ryp_C 3 RRYDSRTTIFSPEGRLYQVEYALESISHAGTAIGIMASDGIVLAAERKVTSTLLEQDTSTEKLYKLNDKIAVAVAGLTAD 82 (244)
T ss_dssp GGGCCCTTCBCTTSCBHHHHHHHHHHTTSCCEEEEEETTEEEEEEECSSCCSSBCSTTCCSSEEESSSSEEEEEEECHHH
T ss_pred CccCCCCceECcCCeeHHHHhHHHHHhcCCcEEEEEeCCEEEEEEeeccCCcCccCCCCCCcEEEECCCEEEEEEEcHHH
Confidence 3799999999999999999999999999999999999999999999999997665 889999999999999999999999
Q ss_pred HHHHHHHHHHHHHHhhhhcCCCCCHHHHHHHHHHHHHhhcccCCCccceeeeEEEEEeCCCCccEEEEECCCCceecccE
Q 027555 81 ARVLINRARIECQSHRLTVEDPVTVEYITRYIAGLQQKYTQSGGVRPFGLSTLIVGFDPYTGVPSLYQTDPSGTFSAWKA 160 (222)
Q Consensus 81 ~~~l~~~~~~~~~~~~~~~~~~i~~~~la~~ls~~~~~~~~~~~~rP~~v~~ivaG~d~~~~gp~ly~iD~~G~~~~~~~ 160 (222)
++.+.+.++.+++.|+++++++++++.+|+++++++|+|+++.++|||+|++||||||+ ++||+||.+||+|++.++++
T Consensus 83 ~~~l~~~~~~~~~~~~~~~~~~~~v~~la~~l~~~~~~~~~~~~~rp~~v~~lvaG~D~-~~gp~Ly~idp~G~~~~~~~ 161 (244)
T 1ryp_C 83 AEILINTARIHAQNYLKTYNEDIPVEILVRRLSDIKQGYTQHGGLRPFGVSFIYAGYDD-RYGYQLYTSNPSGNYTGWKA 161 (244)
T ss_dssp HHHHHHHHHHHHHHHHHHHSSCCCHHHHHHHHHHHHHHHHHBSSCCCCCEEEEEEEEET-TTEEEEEEECTTCCEEEBSE
T ss_pred HHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHhccCCccceEEEEEEEEEcC-CCCCEEEEECCCccEEeeeE
Confidence 99999999999999999999999999999999999999999999999999999999996 58999999999999999999
Q ss_pred EEecCChHHHHHHHHhhcCCCCh-HHHHHHHHHHHHHHhhc-C--CCceEEEEEe--cCce
Q 027555 161 NATGRNSNSMREFLEKNYKETSG-QETIKLAIRALLEVCSF-L--YFRMSLGMVI--TKYY 215 (222)
Q Consensus 161 ~a~G~g~~~~~~~Le~~~~~~ls-~ea~~l~~~~l~~~~~~-d--~~~~~v~~v~--~~~~ 215 (222)
+|+|+|+++++++||++|+++|+ +||++++++||..+.+| + ..++++.+|+ +++.
T Consensus 162 ~aiGsgs~~a~~~Le~~~~~~ms~eea~~la~~al~~~~~rd~~sg~~i~v~vi~~~~~~~ 222 (244)
T 1ryp_C 162 ISVGANTSAAQTLLQMDYKDDMKVDDAIELALKTLSKTTDSSALTYDRLEFATIRKGANDG 222 (244)
T ss_dssp EEESTTHHHHHHHHHHHCCTTCCHHHHHHHHHHHHHHHCSSSSCCGGGEEEEEEECCSSSS
T ss_pred EEECCCcHHHHHHHHHhhhcCCCHHHHHHHHHHHHHHHhccccCCCCcEEEEEEEeecCCC
Confidence 99999999999999999999999 99999999999999999 4 5799999999 7775
No 8
>1ryp_G 20S proteasome; multicatalytic proteinase, protein degradation, antigen processing, hydrolase, protease; 1.90A {Saccharomyces cerevisiae} SCOP: d.153.1.4 PDB: 1jd2_F* 1g65_F 1vsy_G 2f16_F* 2fak_F* 2fny_F* 2gpl_F* 3d29_F* 3dy3_F* 3dy4_F* 3e47_F* 3gpj_F* 3gpt_F* 3gpw_F* 3hye_F* 3l5q_L 3mg0_F* 3mg4_F* 3okj_F* 3shj_F* ...
Probab=100.00 E-value=2.9e-59 Score=390.81 Aligned_cols=215 Identities=33% Similarity=0.482 Sum_probs=204.4
Q ss_pred CCCCCCCeeeCCCCccchhhhHHHHHhcCCcEEEEEeCCEEEEEEeecccccccccCccccEEEecCcEEEEEeccHHHH
Q 027555 2 ARYDRAITVFSPDGHLFQVEYALEAVRKGNAAVGVRGTDTIVLGVEKKSTVKLQDSRSVRKIVSLDNHIALACAGLKADA 81 (222)
Q Consensus 2 ~~yd~~~~~fsp~G~l~q~eya~~a~~~G~t~igi~~~dgVvla~d~~~~~~l~~~~~~~Ki~~i~~~i~~~~sG~~~D~ 81 (222)
++||+++|+|||||||+|+|||++++++|+|+|||+++||||||+|+|.++++...+..+||++|+++|+|++||..+|+
T Consensus 2 ~~yd~~~t~fsp~Grl~QvEya~~av~~Gtt~vgi~~~dgVvlaaD~r~~~g~~~~~~~~KI~~i~~~i~~~~aG~~aD~ 81 (244)
T 1ryp_G 2 TGYDLSNSVFSPDGRNFQVEYAVKAVENGTTSIGIKCNDGVVFAVEKLITSKLLVPQKNVKIQVVDRHIGCVYSGLIPDG 81 (244)
T ss_dssp CCTTSSTTCCCTTSCCHHHHHHHHHHHTSCCEEEEEETTEEEEEEEEECCCTTBCTTTSCCCEEETTTEEEEEEECHHHH
T ss_pred CCccCCcccCCcCCchHHHHhHHHHHHCCCCEEEEEECCEEEEEEecccCCCCccccccCceEEecCCEEEEEcccHHHH
Confidence 68999999999999999999999999999999999999999999999999976555556999999999999999999999
Q ss_pred HHHHHHHHHHHHHhhhhcCCCCCHHHHHHHHHHHHHhhcccCCCccceeeeEEEEEeCCCCccEEEEECCCCceecccEE
Q 027555 82 RVLINRARIECQSHRLTVEDPVTVEYITRYIAGLQQKYTQSGGVRPFGLSTLIVGFDPYTGVPSLYQTDPSGTFSAWKAN 161 (222)
Q Consensus 82 ~~l~~~~~~~~~~~~~~~~~~i~~~~la~~ls~~~~~~~~~~~~rP~~v~~ivaG~d~~~~gp~ly~iD~~G~~~~~~~~ 161 (222)
+.+.++++.++++|+++++++++++.+|+++++++|.|++++++|||+|++|||||| ++||+||.+||+|++.+++++
T Consensus 82 ~~l~~~~~~~~~~~~~~~~~~~~v~~la~~l~~~~~~~t~~~~~rp~~v~~lvaG~D--~~gp~Ly~idp~G~~~~~~~~ 159 (244)
T 1ryp_G 82 RHLVNRGREEAASFKKLYKTPIPIPAFADRLGQYVQAHTLYNSVRPFGVSTIFGGVD--KNGAHLYMLEPSGSYWGYKGA 159 (244)
T ss_dssp HHHHHHHHHHHHHHHHHHSSCCCHHHHHHHHHHHHHHTTSCTTBCCCCEEEEEEEEE--TTEEEEEEECTTSCEEEBSEE
T ss_pred HHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHhcccCccCceEEEEEEEEe--CCcCEEEEECCCCCEEEeeEE
Confidence 999999999999999999999999999999999999999998899999999999999 479999999999999999999
Q ss_pred EecCChHHHHHHHHhh---cCCCCh-HHHHHHHHHHHHHHhhcC---CCceEEEEEec---CceEEe
Q 027555 162 ATGRNSNSMREFLEKN---YKETSG-QETIKLAIRALLEVCSFL---YFRMSLGMVIT---KYYEHL 218 (222)
Q Consensus 162 a~G~g~~~~~~~Le~~---~~~~ls-~ea~~l~~~~l~~~~~~d---~~~~~v~~v~~---~~~~~~ 218 (222)
|+|+|+++++++||+. |+++|+ +||++++++||..+.+|| ..+++|.||++ +++++.
T Consensus 160 aiG~gs~~a~~~Le~~~~~~~~~ms~eea~~la~~al~~~~~~d~~s~~~iev~vi~~~~~~g~~~~ 226 (244)
T 1ryp_G 160 ATGKGRQSAKAELEKLVDHHPEGLSAREAVKQAAKIIYLAHEDNKEKDFELEISWCSLSETNGLHKF 226 (244)
T ss_dssp EESTTHHHHHHHHHHHHHHCTTCCCHHHHHHHHHHHHHHHGGGGTTSCEEEEEEEEETTTTTTSEEE
T ss_pred EECCChHHHHHHHHHhHhhcCCCCCHHHHHHHHHHHHHHHHhccCCCCCeEEEEEEEecCCCCeeee
Confidence 9999999999999997 999999 999999999999999997 46899999997 777653
No 9
>1iru_G 20S proteasome; cell cycle, immune response, proteolysis, ubiquitin, hydrolase; 2.75A {Bos taurus} SCOP: d.153.1.4 PDB: 3unb_F* 3une_F 3unf_F* 3unh_F
Probab=100.00 E-value=1.4e-59 Score=394.93 Aligned_cols=211 Identities=31% Similarity=0.474 Sum_probs=202.8
Q ss_pred CCCCCCCeeeCCCCccchhhhHHHHHhcCCcEEEEEeCCEEEEEEeecccccccccCccccEEEecCcEEEEEeccHHHH
Q 027555 2 ARYDRAITVFSPDGHLFQVEYALEAVRKGNAAVGVRGTDTIVLGVEKKSTVKLQDSRSVRKIVSLDNHIALACAGLKADA 81 (222)
Q Consensus 2 ~~yd~~~~~fsp~G~l~q~eya~~a~~~G~t~igi~~~dgVvla~d~~~~~~l~~~~~~~Ki~~i~~~i~~~~sG~~~D~ 81 (222)
++||+.+|+|||||||+|+|||++|+++|+|+|||+++||||||+|+|.++++...++.+||++|++||+|+++|..+|+
T Consensus 5 ~~yd~~~t~fsp~Grl~QvEyA~~av~~Gtt~vgi~~~dgVvlaaD~r~~~g~~~~~~~~KI~~i~~~i~~~~aG~~aD~ 84 (254)
T 1iru_G 5 TGYDLSASTFSPDGRVFQVEYAMKAVENSSTAIGIRCKDGVVFGVEKLVLSKLYEEGSNKRLFNVDRHVGMAVAGLLADA 84 (254)
T ss_dssp SSTTSCTTCCCTTSCCHHHHHHHHHHHTSCCEEEEECSSBEEEEEEEECSCTTBCTTTTCCEEEEETTEEEEEEECHHHH
T ss_pred cccCCCCccCCcCCccHHHHhHHHHHhcCCCEEEEEECCEEEEEEecccCCCCcCcCcCCcEEEECCCEEEEEecChHHH
Confidence 57999999999999999999999999999999999999999999999999976666789999999999999999999999
Q ss_pred HHHHHHHHHHHHHhhhhcCCCCCHHHHHHHHHHHHHhhcccCCCccceeeeEEEEEeCCCCccEEEEECCCCceecccEE
Q 027555 82 RVLINRARIECQSHRLTVEDPVTVEYITRYIAGLQQKYTQSGGVRPFGLSTLIVGFDPYTGVPSLYQTDPSGTFSAWKAN 161 (222)
Q Consensus 82 ~~l~~~~~~~~~~~~~~~~~~i~~~~la~~ls~~~~~~~~~~~~rP~~v~~ivaG~d~~~~gp~ly~iD~~G~~~~~~~~ 161 (222)
+.+.++++.+++.|+++++++++++.+|+++++++|.|++++++|||+|++||||||+ ++||+||.+||+|++.+++++
T Consensus 85 ~~l~~~~~~~~~~~~~~~~~~~~v~~la~~l~~~~~~~~~~~~~rP~~v~~lvaG~D~-~~gp~Ly~idp~G~~~~~~~~ 163 (254)
T 1iru_G 85 RSLADIAREEASNFRSNFGYNIPLKHLADRVAMYVHAYTLYSAVRPFGCSFMLGSYSV-NDGAQLYMIDPSGVSYGYWGC 163 (254)
T ss_dssp HHHHHHHHHHHHHHHHHHSSCCCHHHHHHHHHHHHHHTTSBSSBCCCSEEEEEEEEET-TTEEEEEEECTTCCEEEBSEE
T ss_pred HHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHhccccccccceEEEEEEEEeC-CCCcEEEEEcCCCCEEeeeeE
Confidence 9999999999999999999999999999999999999999988999999999999996 689999999999999999999
Q ss_pred EecCChHHHHHHHHhhcCCCCh-HHHHHHHHHHHHHHhhcC---CCceEEEEEecC
Q 027555 162 ATGRNSNSMREFLEKNYKETSG-QETIKLAIRALLEVCSFL---YFRMSLGMVITK 213 (222)
Q Consensus 162 a~G~g~~~~~~~Le~~~~~~ls-~ea~~l~~~~l~~~~~~d---~~~~~v~~v~~~ 213 (222)
|+|+|+++++++||+.|+++|+ +||++++++||+.+++++ ..+++|.||+++
T Consensus 164 aiGsgs~~a~~~Le~~~~~~ms~eea~~la~~al~~~~~~~~~~~~~iev~vi~~~ 219 (254)
T 1iru_G 164 AIGKARQAAKTEIEKLQMKEMTCRDIVKEVAKIIYIVHDEVKDKAFELELSWVGEL 219 (254)
T ss_dssp EESTTHHHHHHHHTTSCGGGCCHHHHHHHHHHHHHHHSCSSSSCCEEEEEEECBTT
T ss_pred EecCccHHHHHHHHHhccCCCCHHHHHHHHHHHHHHHHhhccCCCCcEEEEEEEcC
Confidence 9999999999999999999999 999999999999999886 568999999865
No 10
>1iru_C 20S proteasome; cell cycle, immune response, proteolysis, ubiquitin, hydrolase; 2.75A {Bos taurus} SCOP: d.153.1.4 PDB: 3unb_B* 3une_B 3unf_B* 3unh_B
Probab=100.00 E-value=2.4e-59 Score=394.90 Aligned_cols=214 Identities=35% Similarity=0.588 Sum_probs=204.1
Q ss_pred CCCCCCCCeeeCCCCccchhhhHHHHHhcCCcEEEEEeCCEEEEEEeecccccccc-cCccccEEEecCcEEEEEeccHH
Q 027555 1 MARYDRAITVFSPDGHLFQVEYALEAVRKGNAAVGVRGTDTIVLGVEKKSTVKLQD-SRSVRKIVSLDNHIALACAGLKA 79 (222)
Q Consensus 1 ~~~yd~~~~~fsp~G~l~q~eya~~a~~~G~t~igi~~~dgVvla~d~~~~~~l~~-~~~~~Ki~~i~~~i~~~~sG~~~ 79 (222)
|++||+++|+|||||||+|+|||++|+++|+|+|||+++||||||+|+|.++++.. +++.+||++|++||+|+++|..+
T Consensus 2 ~~~yd~~~t~fsp~Grl~QvEYA~~av~~Gtt~vgi~~~dgVVlaaD~r~~~g~~~~~~~~~KI~~i~~~i~~~~aG~~a 81 (261)
T 1iru_C 2 SRRYDSRTTIFSPEGRLYQVEYAMEAIGHAGTCLGILANDGVLLAAERRNIHKLLDEVFFSEKIYKLNEDMACSVAGITS 81 (261)
T ss_dssp CTTTCCCTTCCCTTSCCHHHHHHHHHHTTSCCEEEEBCSSEEEEEECCCCCCTTBCCCSSCSSEEECSSSEEEEEEECHH
T ss_pred CCccCCCCccCCCCCeehHHHhHHHHHhcCCcEEEEEeCCEEEEEEecccCCcccccCCCCccEEEecCCEEEEEeEcHH
Confidence 34799999999999999999999999999999999999999999999999987544 55589999999999999999999
Q ss_pred HHHHHHHHHHHHHHHhhhhcCCCCCHHHHHHHHHHHHHhhcccCCCccceeeeEEEEEeCCCCccEEEEECCCCceeccc
Q 027555 80 DARVLINRARIECQSHRLTVEDPVTVEYITRYIAGLQQKYTQSGGVRPFGLSTLIVGFDPYTGVPSLYQTDPSGTFSAWK 159 (222)
Q Consensus 80 D~~~l~~~~~~~~~~~~~~~~~~i~~~~la~~ls~~~~~~~~~~~~rP~~v~~ivaG~d~~~~gp~ly~iD~~G~~~~~~ 159 (222)
|++.+.++++.++..|+++++++++++.+|+++++++|.|++..++|||+|++||||||+ ++||+||.+||+|++.+++
T Consensus 82 D~~~l~~~~~~~~~~~~~~~~~~~~v~~la~~l~~~~~~~~~~~~~rP~~v~~lvaG~D~-~~gp~Ly~idp~G~~~~~~ 160 (261)
T 1iru_C 82 DANVLTNELRLIAQRYLLQYQEPIPCEQLVTALCDIKQAYTQFGGKRPFGVSLLYIGWDK-HYGFQLYQSDPSGNYGGWK 160 (261)
T ss_dssp HHHHHHHHHHHHHHHHHHHHSSCCCHHHHHHHHHHHHHHTTTBSSCCCCCEEEEEEEEET-TTEEEEEEEETTTEEEECS
T ss_pred HHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHhccccCcCcceEEEEEEEEeC-CCCcEEEEECCCceEEeee
Confidence 999999999999999999999999999999999999999999889999999999999996 6899999999999999999
Q ss_pred EEEecCChHHHHHHHHhhcCC-CCh-HHHHHHHHHHHHHHhhcC---CCceEEEEEecCce
Q 027555 160 ANATGRNSNSMREFLEKNYKE-TSG-QETIKLAIRALLEVCSFL---YFRMSLGMVITKYY 215 (222)
Q Consensus 160 ~~a~G~g~~~~~~~Le~~~~~-~ls-~ea~~l~~~~l~~~~~~d---~~~~~v~~v~~~~~ 215 (222)
++|+|+|+++++++||++|++ +|+ +||++++++||..+.+|| ..+++|.+|++++.
T Consensus 161 ~~aiGsgs~~a~~~Le~~~~~~~ms~eeA~~la~~al~~~~~~d~~sg~~i~v~vi~~~~~ 221 (261)
T 1iru_C 161 ATCIGNNSAAAVSMLKQDYKEGEMTLKSALALAIKVLNKTMDVSKLSAEKVEIATLTRENG 221 (261)
T ss_dssp EEEESTTTTHHHHHHHHHCCTTCCCHHHHHHHHHHHHHHSSSCTTCCSTTCEEEEEECCSS
T ss_pred eEEeCcccHHHHHHHHHhhccCCCCHHHHHHHHHHHHHHHHhccCCCCCcEEEEEEEcCCC
Confidence 999999999999999999999 999 999999999999999997 57999999998773
No 11
>3nzj_F Proteasome component C1; ubiquitin, protein degradation, N-terminal nucleophilic HYDR 19S regulatory particle; HET: TY5 TRO MES; 2.40A {Saccharomyces cerevisiae} PDB: 1z7q_G* 3nzw_F* 3nzx_F* 3un4_F* 3un8_F* 4b4t_G 4g4s_G* 3bdm_F* 1fnt_G* 2zcy_F*
Probab=100.00 E-value=3.3e-59 Score=398.15 Aligned_cols=209 Identities=34% Similarity=0.495 Sum_probs=201.4
Q ss_pred CCCCCCCeeeCCCCccchhhhHHHHHhcCCcEEEEEeCCEEEEEEeecccccccccCccccEEEecCcEEEEEeccHHHH
Q 027555 2 ARYDRAITVFSPDGHLFQVEYALEAVRKGNAAVGVRGTDTIVLGVEKKSTVKLQDSRSVRKIVSLDNHIALACAGLKADA 81 (222)
Q Consensus 2 ~~yd~~~~~fsp~G~l~q~eya~~a~~~G~t~igi~~~dgVvla~d~~~~~~l~~~~~~~Ki~~i~~~i~~~~sG~~~D~ 81 (222)
++||+++|+|||+|||+|||||+||+++|+|+|||+++||||||+|+|.++++...+..+||++|++||+|+++|+.+|+
T Consensus 6 ~~yd~~~t~fSP~Grl~QvEYA~kAv~~GtT~Vgik~kdGVVlAaD~r~t~gl~~~~~~~KI~~I~d~i~~~~aG~~aD~ 85 (288)
T 3nzj_F 6 TGYDLSNSVFSPDGRNFQVEYAVKAVENGTTSIGIKCNDGVVFAVEKLITSKLLVPQKNVKIQVVDRHIGCVYSGLIPDG 85 (288)
T ss_dssp CCTTSSTTCCCTTSCCHHHHHHHHHHHTSCCEEEEEETTEEEEEEEEEECCTTBCTTCSCCCEEETTTEEEEEEECHHHH
T ss_pred CCccCCcccCCCCCchHHHHHHHHHHhcCCcEEEEEECCEEEEEEcCCcccCCccccccceEEEEcCCEEEEecCcHHHH
Confidence 57999999999999999999999999999999999999999999999999976665678999999999999999999999
Q ss_pred HHHHHHHHHHHHHhhhhcCCCCCHHHHHHHHHHHHHhhcccCCCccceeeeEEEEEeCCCCccEEEEECCCCceecccEE
Q 027555 82 RVLINRARIECQSHRLTVEDPVTVEYITRYIAGLQQKYTQSGGVRPFGLSTLIVGFDPYTGVPSLYQTDPSGTFSAWKAN 161 (222)
Q Consensus 82 ~~l~~~~~~~~~~~~~~~~~~i~~~~la~~ls~~~~~~~~~~~~rP~~v~~ivaG~d~~~~gp~ly~iD~~G~~~~~~~~ 161 (222)
+.|+++++.+++.|+++++++|+++.+|+++++++|.|++++++|||+|++||||||+ +||+||.+||+|++.+++++
T Consensus 86 ~~l~~~lr~e~~~y~~~~~~~i~v~~lA~~l~~~l~~yt~~~~~rP~gv~~lvaG~D~--~Gp~Ly~iDp~G~~~~~~~~ 163 (288)
T 3nzj_F 86 RHLVNRGREEAASFKKLYKTPIPIPAFADRLGQYVQAHTLYNSVRPFGVSTIFGGVDK--NGAHLYMLEPSGSYWGYKGA 163 (288)
T ss_dssp HHHHHHHHHHHHHHHHHHSSCCCHHHHHHHHHHHHHHTTSCTTBCCCCEEEEEEEEET--TEEEEEEECTTSCEEEBSEE
T ss_pred HHHHHHHHHHHHHHHHHcCCcCCHHHHHHHHHHHHHHHHHhccCCCceEEEEEEEEeC--CCCEEEEECCCCCEEEcCEE
Confidence 9999999999999999999999999999999999999999999999999999999995 78999999999999999999
Q ss_pred EecCChHHHHHHHHhh---cCCCCh-HHHHHHHHHHHHHHhhcC---CCceEEEEEec
Q 027555 162 ATGRNSNSMREFLEKN---YKETSG-QETIKLAIRALLEVCSFL---YFRMSLGMVIT 212 (222)
Q Consensus 162 a~G~g~~~~~~~Le~~---~~~~ls-~ea~~l~~~~l~~~~~~d---~~~~~v~~v~~ 212 (222)
|+|+|+++++++||+. |+++|+ +||++++++||..+++|+ .++++|.||++
T Consensus 164 aiGsgs~~a~~~Lek~~~~~~~~ms~eEAv~la~~al~~a~~~~~~~~~~iev~vIt~ 221 (288)
T 3nzj_F 164 ATGKGRQSAKAELEKLVDHHPEGLSAREAVKQAAKIIYLAHEDNKEKDFELEISWCSL 221 (288)
T ss_dssp EESTTHHHHHHHHHHHHHHCTTCCCHHHHHHHHHHHHHHHGGGGTTSEEEEEEEEEET
T ss_pred EEcCcHHHHHHHHHHhccccCCCCCHHHHHHHHHHHHHHHHhcccCCCCeEEEEEEEe
Confidence 9999999999999999 999999 999999999999999996 46899999997
No 12
>1ryp_D 20S proteasome; multicatalytic proteinase, protein degradation, antigen processing, hydrolase, protease; 1.90A {Saccharomyces cerevisiae} SCOP: d.153.1.4 PDB: 1jd2_C* 1g65_C 2f16_C* 2fak_C* 2fny_C* 2gpl_C* 3d29_C* 3dy3_C* 3dy4_C* 3e47_C* 3gpj_C* 3gpt_C* 3gpw_C* 3hye_C* 3mg0_C* 3mg4_C* 3oeu_C* 3oev_C* 3okj_C* 3shj_C* ...
Probab=100.00 E-value=7.7e-59 Score=387.56 Aligned_cols=213 Identities=57% Similarity=0.981 Sum_probs=202.8
Q ss_pred CCCCCCeeeCCCCccchhhhHHHHHhcCCcEEEEEeCCEEEEEEeeccccccccc-CccccEEEecCcEEEEEeccHHHH
Q 027555 3 RYDRAITVFSPDGHLFQVEYALEAVRKGNAAVGVRGTDTIVLGVEKKSTVKLQDS-RSVRKIVSLDNHIALACAGLKADA 81 (222)
Q Consensus 3 ~yd~~~~~fsp~G~l~q~eya~~a~~~G~t~igi~~~dgVvla~d~~~~~~l~~~-~~~~Ki~~i~~~i~~~~sG~~~D~ 81 (222)
+||+.+|+|||||||+|+|||+||+++|+|+|||+++||||||+|+|.++++... ++.+||++|+++|+|+++|..+|+
T Consensus 1 ~yd~~~t~fsp~Grl~QvEya~~av~~Gtt~vgi~~~dgVvlaaD~r~~~g~~~~~~~~~Ki~~i~~~i~~~~aG~~aD~ 80 (241)
T 1ryp_D 1 GYDRALSIFSPDGHIFQVEYALEAVKRGTCAVGVKGKNCVVLGCERRSTLKLQDTRITPSKVSKIDSHVVLSFSGLNADS 80 (241)
T ss_dssp CCCCCCSCCBTTTBCHHHHHHHHHHTTSCCEEEEECSSCEEEEEECCCSSCCBCTTTSCCSEEEEETTEEEEEEECHHHH
T ss_pred CCCCCceeECCCCcchHHHHHHHHHHcCCCEEEEEeCCEEEEEEeeccCccCccccCCcCcEEEecCCEEEEEeecHHHH
Confidence 6999999999999999999999999999999999999999999999999976554 489999999999999999999999
Q ss_pred HHHHHHHHHHHHHhhhhcCCCCCHHHHHHHHHHHHHhhcccCCCccceeeeEEEEEeCCC-CccEEEEECCCCceecccE
Q 027555 82 RVLINRARIECQSHRLTVEDPVTVEYITRYIAGLQQKYTQSGGVRPFGLSTLIVGFDPYT-GVPSLYQTDPSGTFSAWKA 160 (222)
Q Consensus 82 ~~l~~~~~~~~~~~~~~~~~~i~~~~la~~ls~~~~~~~~~~~~rP~~v~~ivaG~d~~~-~gp~ly~iD~~G~~~~~~~ 160 (222)
+.+.+.++.+++.|+++++++++++.+|+++++++|.|++++++|||+|++||||||+ + +||+||.+||+|++.++++
T Consensus 81 ~~l~~~~~~~~~~~~~~~~~~~~v~~la~~l~~~~~~~~~~~~~rP~~v~~lvaG~D~-~~~gp~Ly~idp~G~~~~~~~ 159 (241)
T 1ryp_D 81 RILIEKARVEAQSHRLTLEDPVTVEYLTRYVAGVQQRYTQSGGVRPFGVSTLIAGFDP-RDDEPKLYQTEPSGIYSSWSA 159 (241)
T ss_dssp HHHHHHHHHHHHHHHHHHSSCCCHHHHHHHHHHHHHHTTSSTTBCCCSEEEEEEECCT-TCCSCEEEEECTTSCEEEBSE
T ss_pred HHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHccCCCCCCcceeeEEEEEcC-CCCCeeEEEECCCCCEEEeee
Confidence 9999999999999999999999999999999999999999888999999999999995 4 8999999999999999999
Q ss_pred EEecCChHHHHHHHHhhc---CCCCh-HHHHHHHHHHHHHHhhcCCCceEEEEEecCc-eE
Q 027555 161 NATGRNSNSMREFLEKNY---KETSG-QETIKLAIRALLEVCSFLYFRMSLGMVITKY-YE 216 (222)
Q Consensus 161 ~a~G~g~~~~~~~Le~~~---~~~ls-~ea~~l~~~~l~~~~~~d~~~~~v~~v~~~~-~~ 216 (222)
+|+|+|+++++++||++| +++|+ +||++++++||..+.+....+++|.+|++++ ++
T Consensus 160 ~aiG~gs~~a~~~Le~~~~~~~~~ms~eea~~l~~~al~~~~~~sg~~i~v~vi~~~~~~~ 220 (241)
T 1ryp_D 160 QTIGRNSKTVREFLEKNYDRKEPPATVEECVKLTVRSLLEVVQTGAKNIEITVVKPDSDIV 220 (241)
T ss_dssp EEESTTHHHHHHHHHTTCCTTSCCCSHHHHHHHHHHHHHHHHCSCSTTEEEEEEETTTEEE
T ss_pred EEECCCcHHHHHHHHHhhhcccCCCCHHHHHHHHHHHHHHHhcCCCCcEEEEEEECCCcEE
Confidence 999999999999999999 99999 9999999999999998447899999999875 44
No 13
>1j2p_A Alpha-ring, proteasome alpha subunit; hydrolase; 2.60A {Archaeoglobus fulgidus} SCOP: d.153.1.4 PDB: 1j2q_A*
Probab=100.00 E-value=2.3e-58 Score=385.81 Aligned_cols=212 Identities=44% Similarity=0.723 Sum_probs=203.2
Q ss_pred CCCCCCeeeCCCCccchhhhHHHHHhcCCcEEEEEeCCEEEEEEeecccccccccCccccEEEecCcEEEEEeccHHHHH
Q 027555 3 RYDRAITVFSPDGHLFQVEYALEAVRKGNAAVGVRGTDTIVLGVEKKSTVKLQDSRSVRKIVSLDNHIALACAGLKADAR 82 (222)
Q Consensus 3 ~yd~~~~~fsp~G~l~q~eya~~a~~~G~t~igi~~~dgVvla~d~~~~~~l~~~~~~~Ki~~i~~~i~~~~sG~~~D~~ 82 (222)
+||+.+|+|||||||+|+|||++++++|+|+|||+++||||||+|+|.+.+++.+++.+||++|+++|+|+++|..+|++
T Consensus 7 ~yd~~~t~fsp~Grl~QvEya~~av~~Gtt~vgi~~~dgVvlaaD~r~~~~l~~~~~~~KI~~i~~~i~~~~aG~~aD~~ 86 (246)
T 1j2p_A 7 GYDRAITVFSPDGRLFQVEYAREAVKRGATAIGIKCKEGVILIADKRVGSKLLEKDTIEKIYKIDEHICAATSGLVADAR 86 (246)
T ss_dssp TSSSCTTCCCTTSCCHHHHHHHHHHHTSCCEEEEEETTEEEEEEECCCSCTTBCGGGCCSEEECSSSEEEEEEECHHHHH
T ss_pred CcCCCCceECCCCeehHHHhHHHHHHcCCcEEEEEECCEEEEEEeccCCccccccCccCcEEEECCCEEEEEeEccHHHH
Confidence 69999999999999999999999999999999999999999999999998877788999999999999999999999999
Q ss_pred HHHHHHHHHHHHhhhhcCCCCCHHHHHHHHHHHHHhhcccCCCccceeeeEEEEEeCCCCccEEEEECCCCceecccEEE
Q 027555 83 VLINRARIECQSHRLTVEDPVTVEYITRYIAGLQQKYTQSGGVRPFGLSTLIVGFDPYTGVPSLYQTDPSGTFSAWKANA 162 (222)
Q Consensus 83 ~l~~~~~~~~~~~~~~~~~~i~~~~la~~ls~~~~~~~~~~~~rP~~v~~ivaG~d~~~~gp~ly~iD~~G~~~~~~~~a 162 (222)
.+.+.++.++..|+++++++++++.+|+++++++|.|+++.+.|||+|++|||||| +||+||.+||+|++.+++++|
T Consensus 87 ~l~~~~~~~~~~~~~~~~~~~~v~~la~~l~~~~~~y~~~~~~rp~~v~~lvaG~D---~gp~Ly~idp~G~~~~~~~~a 163 (246)
T 1j2p_A 87 VLIDRARIEAQINRLTYDIPITVKELAKKICDFKQQYTQYGGVRPFGVSLLIAGVN---EVPKLYETDPSGALLEYKATA 163 (246)
T ss_dssp HHHHHHHHHHHHHHHHSSSCCCHHHHHHHHHHHHHHTTSBTTBCCCCEEEEEEEES---SSEEEEEECTTCCEEEBSEEE
T ss_pred HHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHhcccCcccccEEEEEEEEC---CCCEEEEECCCceEEeeeEEE
Confidence 99999999999999999999999999999999999999998999999999999998 689999999999999999999
Q ss_pred ecCChHHHHHHHHhhcCCCCh-HHHHHHHHHHHHHHhhcC--CCceEEEEEe-c-CceEE
Q 027555 163 TGRNSNSMREFLEKNYKETSG-QETIKLAIRALLEVCSFL--YFRMSLGMVI-T-KYYEH 217 (222)
Q Consensus 163 ~G~g~~~~~~~Le~~~~~~ls-~ea~~l~~~~l~~~~~~d--~~~~~v~~v~-~-~~~~~ 217 (222)
+|+|+++++++||+.|+++|+ +||++++++||..+.++. ..+++|.+|+ + ++++.
T Consensus 164 iGsgs~~a~~~Le~~~~~~ms~eea~~la~~al~~~~~~~~sg~~i~v~vi~~~~~~~~~ 223 (246)
T 1j2p_A 164 IGMGRMAVTEFFEKEYRDDLSFDDAMVLGLVAMGLSIESELVPENIEVGYVKVDDRTFKE 223 (246)
T ss_dssp ESTTHHHHHHHHHHHCCTTCCHHHHHHHHHHHHHHHHTSCCCGGGEEEEEEETTTCCCEE
T ss_pred ECCCcHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHhhccCCCCcEEEEEEEcCCCceEE
Confidence 999999999999999999999 999999999999999974 5799999998 4 45553
No 14
>1ryp_B 20S proteasome; multicatalytic proteinase, protein degradation, antigen processing, hydrolase, protease; 1.90A {Saccharomyces cerevisiae} SCOP: d.153.1.4 PDB: 1fnt_B 1g0u_A* 1jd2_A* 1g65_A 1z7q_B 2f16_A* 2fak_A* 2fny_A* 2gpl_A* 2zcy_A* 3bdm_A* 3d29_A* 3dy3_A* 3dy4_A* 3e47_A* 3gpj_A* 3gpt_A* 3gpw_A* 3hye_A* 3mg0_A* ...
Probab=100.00 E-value=1.8e-58 Score=387.35 Aligned_cols=212 Identities=34% Similarity=0.549 Sum_probs=203.9
Q ss_pred CCCCCCCCeeeCCCCccchhhhHHHHHhcCCcEEEEEeCCEEEEEEeecccccccccCccccEEEecCcEEEEEeccHHH
Q 027555 1 MARYDRAITVFSPDGHLFQVEYALEAVRKGNAAVGVRGTDTIVLGVEKKSTVKLQDSRSVRKIVSLDNHIALACAGLKAD 80 (222)
Q Consensus 1 ~~~yd~~~~~fsp~G~l~q~eya~~a~~~G~t~igi~~~dgVvla~d~~~~~~l~~~~~~~Ki~~i~~~i~~~~sG~~~D 80 (222)
|++||+.+|+|||||||+|+|||++|+++|+|+|||+++||||||+|+|.+.+++.+++.+||++|+++|+|++||..+|
T Consensus 2 ~~~yd~~~t~fsp~Grl~QvEyA~~av~~Gtt~vgi~~~dgVvlaaD~r~~~~l~~~~~~~Ki~~i~~~i~~~~aG~~aD 81 (250)
T 1ryp_B 2 TDRYSFSLTTFSPSGKLGQIDYALTAVKQGVTSLGIKATNGVVIATEKKSSSPLAMSETLSKVSLLTPDIGAVYSGMGPD 81 (250)
T ss_dssp CCCCCSBSSCBCTTSCBHHHHHHHHHHHTSCCEEEEEETTEEEEEEECCCSCSSBCGGGCCSSEEEETTEEEEEEECHHH
T ss_pred CCcccCCceeECCCCccHHHHhHHHHHHcCCcEEEEEECCEEEEEEeccCCCccccCcccCceEEECCCEEEEeeeCHHH
Confidence 35799999999999999999999999999999999999999999999999877888889999999999999999999999
Q ss_pred HHHHHHHHHHHHHH-hhhhcCCCCCHHHHHHHHHHHHHhhcccCCCccceeeeEEEEEeCCCCccEEEEECCCCceeccc
Q 027555 81 ARVLINRARIECQS-HRLTVEDPVTVEYITRYIAGLQQKYTQSGGVRPFGLSTLIVGFDPYTGVPSLYQTDPSGTFSAWK 159 (222)
Q Consensus 81 ~~~l~~~~~~~~~~-~~~~~~~~i~~~~la~~ls~~~~~~~~~~~~rP~~v~~ivaG~d~~~~gp~ly~iD~~G~~~~~~ 159 (222)
++.+.++++.+++. |++.++.+++++.+++.++++++.++++.++|||+|++||||||+ ++||+||.+||+|++.+++
T Consensus 82 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~a~~~~~~~~~~~~rp~~v~~lvaG~D~-~~gp~Ly~idp~G~~~~~~ 160 (250)
T 1ryp_B 82 YRVLVDKSRKVAHTSYKRIYGEYPPTKLLVSEVAKIMQEATQSGGVRPFGVSLLIAGHDE-FNGFSLYQVDPSGSYFPWK 160 (250)
T ss_dssp HHHHHHHHHHHHHHTTHHHHSSCCCHHHHHHHHHHHHHHTTTSBTBCCCCEEEEEEEEET-TTEEEEEEECTTSCEEEBS
T ss_pred HHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHhcCCcccceEEEEEEEEcC-CCCcEEEEECCCCCEEeec
Confidence 99999999999999 999999999999999999999999999889999999999999996 5799999999999999999
Q ss_pred EEEecCChHHHHHHHHhhcCCCCh-HHHHHHHHHHHHHHhhcC--CCceEEEEEecC
Q 027555 160 ANATGRNSNSMREFLEKNYKETSG-QETIKLAIRALLEVCSFL--YFRMSLGMVITK 213 (222)
Q Consensus 160 ~~a~G~g~~~~~~~Le~~~~~~ls-~ea~~l~~~~l~~~~~~d--~~~~~v~~v~~~ 213 (222)
++|+|+|+++++++||+.|+++|+ +||++++++||..+++++ ..+++|.+|+.+
T Consensus 161 ~~aiGsgs~~a~~~Le~~~~~~ms~eea~~la~~al~~~~~~~~sg~~i~v~vi~~~ 217 (250)
T 1ryp_B 161 ATAIGKGSVAAKTFLEKRWNDELELEDAIHIALLTLKESVEGEFNGDTIELAIIGDE 217 (250)
T ss_dssp EEEESTTHHHHHHHHHHHCCTTCCHHHHHHHHHHHHHHHCCSCCSTTTEEEEEECSC
T ss_pred eeEecCccHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHhccccCCCCEEEEEEEcc
Confidence 999999999999999999999999 999999999999999987 579999999875
No 15
>1iru_E 20S proteasome; cell cycle, immune response, proteolysis, ubiquitin, hydrolase; 2.75A {Bos taurus} SCOP: d.153.1.4 PDB: 3unb_D* 3une_D 3unf_D* 3unh_D
Probab=100.00 E-value=1e-58 Score=386.83 Aligned_cols=211 Identities=37% Similarity=0.610 Sum_probs=202.8
Q ss_pred CCCCCCeeeCCCCccchhhhHHHHHhcCCcEEEEEeCCEEEEEEeecccccccccCccccEEEecCcEEEEEeccHHHHH
Q 027555 3 RYDRAITVFSPDGHLFQVEYALEAVRKGNAAVGVRGTDTIVLGVEKKSTVKLQDSRSVRKIVSLDNHIALACAGLKADAR 82 (222)
Q Consensus 3 ~yd~~~~~fsp~G~l~q~eya~~a~~~G~t~igi~~~dgVvla~d~~~~~~l~~~~~~~Ki~~i~~~i~~~~sG~~~D~~ 82 (222)
+||+.+|+|||||||+|+|||++|+++|+|+|||+++||||||+|+|.++++..+++.+||++|+++|+|+++|..+|++
T Consensus 7 ~yd~~~t~fsp~Grl~QvEya~~av~~Gtt~vgi~~~dgVvlaaD~r~~~g~~~~~~~~Ki~~i~~~i~~~~aG~~aD~~ 86 (241)
T 1iru_E 7 EYDRGVNTFSPEGRLFQVEYDIEAIKLGSTAIGIQTSEGVCLAVEKRITSPLMEPSSIEKIVEIDAHIGCAMSGLIADAK 86 (241)
T ss_dssp -CCCCTTCBCTTSCBHHHHHHHHHHTTSCCEEEEEETTEEEEEEECCCCCTTBCTTSCCSEEEEETTEEEEEEECHHHHH
T ss_pred CCCCCCceECCCCccHHHHHHHHHHHcCCcEEEEEcCCEEEEEEecccCCcCcCccccceEEEEcCCEEEEEeeChHHHH
Confidence 79999999999999999999999999999999999999999999999999766688899999999999999999999999
Q ss_pred HHHHHHHHHHHHhhhhcCCCCCHHHHHHHHHHHHHhhcccCC-----CccceeeeEEEEEeCCCCccEEEEECCCCceec
Q 027555 83 VLINRARIECQSHRLTVEDPVTVEYITRYIAGLQQKYTQSGG-----VRPFGLSTLIVGFDPYTGVPSLYQTDPSGTFSA 157 (222)
Q Consensus 83 ~l~~~~~~~~~~~~~~~~~~i~~~~la~~ls~~~~~~~~~~~-----~rP~~v~~ivaG~d~~~~gp~ly~iD~~G~~~~ 157 (222)
.+.++++.+++.|+++++++++++.+|+++++++|+|+++.+ .|||+|++|||||| ++||+||.+||+|++.+
T Consensus 87 ~l~~~~~~~~~~~~~~~~~~~~v~~~a~~l~~~~~~y~~~~~~~~l~~rp~~v~~lvaG~D--~~gp~Ly~idp~G~~~~ 164 (241)
T 1iru_E 87 TLIDKARVETQNHWFTYNETMTVESVTQAVSNLALQFGEEDADPGAMSRPFGVALLFGGVD--EKGPQLFHMDPSGTFVQ 164 (241)
T ss_dssp HHHHHHHHHHHHHHHHHSSCCCHHHHHHHHHTTTTCBCSTTCCSSCBSSCCCEEEEEEEEE--TTEEEEEEECTTSCEEE
T ss_pred HHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHhccccccccccccceEEEEEEEEe--CCCCEEEEECCCCcEEe
Confidence 999999999999999999999999999999999999998877 89999999999999 58999999999999999
Q ss_pred ccEEEecCChHHHHHHHHhhcCCCCh-HHHHHHHHHHHHHHhhcC--CCceEEEEEecCce
Q 027555 158 WKANATGRNSNSMREFLEKNYKETSG-QETIKLAIRALLEVCSFL--YFRMSLGMVITKYY 215 (222)
Q Consensus 158 ~~~~a~G~g~~~~~~~Le~~~~~~ls-~ea~~l~~~~l~~~~~~d--~~~~~v~~v~~~~~ 215 (222)
++++|+|+|+++++++||+.|+++|+ +||++++++||..+.+|+ ..+++|.+|++++.
T Consensus 165 ~~~~aiGsgs~~a~~~Le~~~~~~ms~eea~~la~~al~~~~~~~~sg~~i~v~vi~~~~~ 225 (241)
T 1iru_E 165 CDARAIGSASEGAQSSLQELYHKSMTLKEAIKSSLIILKQVMEEKLNATNIELATVQPGQN 225 (241)
T ss_dssp BSEEEESTTHHHHHHHHHHHCCTTCCHHHHHHHHHHHHHHHCSSCCCTTSEEEEEECSSSC
T ss_pred cceEEECCCcHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHhhccCCCCCEEEEEEECCCC
Confidence 99999999999999999999999999 999999999999999985 67999999998876
No 16
>1ryp_F 20S proteasome; multicatalytic proteinase, protein degradation, antigen processing, hydrolase, protease; 1.90A {Saccharomyces cerevisiae} SCOP: d.153.1.4 PDB: 1jd2_E* 1g65_E 2f16_E* 2fak_E* 2fny_E* 2gpl_E* 3d29_E* 3dy3_E* 3dy4_E* 3e47_E* 3gpj_E* 3gpt_E* 3gpw_E* 3hye_E* 3mg0_E* 3mg4_E* 3oeu_E* 3oev_E* 3okj_E* 3shj_E* ...
Probab=100.00 E-value=8.1e-59 Score=385.62 Aligned_cols=211 Identities=34% Similarity=0.513 Sum_probs=200.8
Q ss_pred CCCCCCCeeeCCCCccchhhhHHHHHhcCCcEEEEEeCCEEEEEEeecccccccccCccccEEEecCcEEEEEeccHHHH
Q 027555 2 ARYDRAITVFSPDGHLFQVEYALEAVRKGNAAVGVRGTDTIVLGVEKKSTVKLQDSRSVRKIVSLDNHIALACAGLKADA 81 (222)
Q Consensus 2 ~~yd~~~~~fsp~G~l~q~eya~~a~~~G~t~igi~~~dgVvla~d~~~~~~l~~~~~~~Ki~~i~~~i~~~~sG~~~D~ 81 (222)
++||+.+|+|||||||+|+|||++|+++|+|+|||+++||||||+|+|.++++. ++.+||++|++||+|+++|..+|+
T Consensus 3 ~~yd~~~t~fsp~Grl~QvEyA~~av~~Gtt~vgi~~~dgVvlaaD~r~~~~l~--~~~~Ki~~i~~~i~~~~aG~~aD~ 80 (233)
T 1ryp_F 3 NNYDGDTVTFSPTGRLFQVEYALEAIKQGSVTVGLRSNTHAVLVALKRNADELS--SYQKKIIKCDEHMGLSLAGLAPDA 80 (233)
T ss_dssp HHHSSCTTCCCTTSCCHHHHHHHHHHHTSCCEEEEECSSEEEEEEECCCSSTTB--CCCCCEEEEETTEEEEEEECHHHH
T ss_pred CcccCCCccCCCCCeehHHHHHHHHHHcCCCEEEEEcCCEEEEEEEeccccccc--cccCcEEEEcCCEEEEEEechHHH
Confidence 379999999999999999999999999999999999999999999999988765 377999999999999999999999
Q ss_pred HHHHHHHHHHHHHhhhhcCCCCCHHHHHHHHHHHHHhhcccCCCccceeeeEEEEEeCCCCccEEEEECCCCceecccEE
Q 027555 82 RVLINRARIECQSHRLTVEDPVTVEYITRYIAGLQQKYTQSGGVRPFGLSTLIVGFDPYTGVPSLYQTDPSGTFSAWKAN 161 (222)
Q Consensus 82 ~~l~~~~~~~~~~~~~~~~~~i~~~~la~~ls~~~~~~~~~~~~rP~~v~~ivaG~d~~~~gp~ly~iD~~G~~~~~~~~ 161 (222)
+.+.+.++.+++.|+++++++++++.+|+++++++|.|+++.+.|||+|++||||||+ +||+||.+||+|++.+++++
T Consensus 81 ~~l~~~~~~~~~~~~~~~~~~~~v~~la~~l~~~~~~~t~~~~~rp~~v~~lvaG~D~--~gp~Ly~idp~G~~~~~~~~ 158 (233)
T 1ryp_F 81 RVLSNYLRQQCNYSSLVFNRKLAVERAGHLLCDKAQKNTQSYGGRPYGVGLLIIGYDK--SGAHLLEFQPSGNVTELYGT 158 (233)
T ss_dssp HHHHHHHHHHHHHHHHHHSCCCCHHHHHHHHHHHHHHHHHBTTCCCCCEEEEEEEEET--TEEEEEEECTTSCEEEESEE
T ss_pred HHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHhcccCCcCcceEEEEEEEeC--CcCEEEEECCCCCeeeeeEE
Confidence 9999999999999999999999999999999999999999999999999999999994 78999999999999999999
Q ss_pred EecCChHHHHHHHHhhcCC--CC--h-HHHHHHHHHHHHHHhhcC----CCceEEEEEecC-ceEE
Q 027555 162 ATGRNSNSMREFLEKNYKE--TS--G-QETIKLAIRALLEVCSFL----YFRMSLGMVITK-YYEH 217 (222)
Q Consensus 162 a~G~g~~~~~~~Le~~~~~--~l--s-~ea~~l~~~~l~~~~~~d----~~~~~v~~v~~~-~~~~ 217 (222)
|+|+|+++++++||++|++ +| + +||++++++||..++ || ..+++|.+|+++ +++.
T Consensus 159 aiG~gs~~a~~~Le~~~~~~~~m~~s~eea~~~a~~al~~~~-~d~~~s~~~i~v~vi~~~~~~~~ 223 (233)
T 1ryp_F 159 AIGARSQGAKTYLERTLDTFIKIDGNPDELIKAGVEAISQSL-RDESLTVDNLSIAIVGKDTPFTI 223 (233)
T ss_dssp EESTTHHHHHHHHHHHHHHHTTCCSCHHHHHHHHHHHHTTSC-CSSCCCTTTEEEEEEETTEEEEE
T ss_pred EECCCcHHHHHHHHHHhccccccCCCHHHHHHHHHHHHHHHh-hcccCCCCcEEEEEEECCCCEEE
Confidence 9999999999999999999 99 9 999999999999999 54 579999999987 5554
No 17
>1ryp_E 20S proteasome; multicatalytic proteinase, protein degradation, antigen processing, hydrolase, protease; 1.90A {Saccharomyces cerevisiae} SCOP: d.153.1.4 PDB: 1jd2_D* 1g65_D 2f16_D* 2fak_D* 2fny_D* 2gpl_D* 3d29_D* 3dy3_D* 3dy4_D* 3e47_D* 3gpj_D* 3gpt_D* 3gpw_D* 3hye_D* 3mg0_D* 3mg4_D* 3okj_D* 3shj_D* 3tdd_D* 2z5c_C ...
Probab=100.00 E-value=2.5e-58 Score=384.63 Aligned_cols=210 Identities=35% Similarity=0.585 Sum_probs=202.4
Q ss_pred CCCCeeeCCCCccchhhhHHHHHhcCCcEEEEEeCCEEEEEEeecccccccccCccccEEEecCcEEEEEeccHHHHHHH
Q 027555 5 DRAITVFSPDGHLFQVEYALEAVRKGNAAVGVRGTDTIVLGVEKKSTVKLQDSRSVRKIVSLDNHIALACAGLKADARVL 84 (222)
Q Consensus 5 d~~~~~fsp~G~l~q~eya~~a~~~G~t~igi~~~dgVvla~d~~~~~~l~~~~~~~Ki~~i~~~i~~~~sG~~~D~~~l 84 (222)
|+.+|+|||||||+|||||++|+++|+|+|||+++||||||+|+|.++++..+++.+||++|+++|+|+++|..+|++.+
T Consensus 1 d~~~t~fsp~Grl~QvEyA~~av~~Gtt~vgi~~~dgVvlaaD~r~~~g~~~~~~~~Ki~~i~~~i~~~~aG~~aD~~~l 80 (242)
T 1ryp_E 1 DRGVSTFSPEGRLFQVEYSLEAIKLGSTAIGIATKEGVVLGVEKRATSPLLESDSIEKIVEIDRHIGCAMSGLTADARSM 80 (242)
T ss_dssp CCCTTCBCTTSCBHHHHHHHHHHTTSCCEEEEECSSCEEEEEECCCSSTTBCGGGCCCEEEEETTEEEEEEESGGGHHHH
T ss_pred CCCCceECCCCcChHHHhHHHHHHcCCCEEEEEECCEEEEEEeecCCCcCccCccCCceEEEcCCEEEEEeecHHHHHHH
Confidence 78899999999999999999999999999999999999999999999976668889999999999999999999999999
Q ss_pred HHHHHHHHHHhhhhcCCCCCHHHHHHHHHHHHHhhcccCC------CccceeeeEEEEEeCCCCccEEEEECCCCceecc
Q 027555 85 INRARIECQSHRLTVEDPVTVEYITRYIAGLQQKYTQSGG------VRPFGLSTLIVGFDPYTGVPSLYQTDPSGTFSAW 158 (222)
Q Consensus 85 ~~~~~~~~~~~~~~~~~~i~~~~la~~ls~~~~~~~~~~~------~rP~~v~~ivaG~d~~~~gp~ly~iD~~G~~~~~ 158 (222)
.++++.+++.|+++++++++++.+|+++++++|.|+++++ .|||+|++||||||+ ++||+||.+||+|++.++
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~v~~la~~l~~~~~~~t~~~~~~~~l~~RP~~v~~lvaG~D~-~~gp~Ly~idp~G~~~~~ 159 (242)
T 1ryp_E 81 IEHARTAAVTHNLYYDEDINVESLTQSVCDLALRFGEGASGEERLMSRPFGVALLIAGHDA-DDGYQLFHAEPSGTFYRY 159 (242)
T ss_dssp HHHHHHHHHHHHHHHSSCCCHHHHHHHHHTTTTCCBSSCTTSCCCBSSCCSEEEEEEEEET-TTEEEEEEECTTSCEEEB
T ss_pred HHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHhccccCcccccccCcceEEEEEEEEeC-CCCCEEEEECCCCCEecc
Confidence 9999999999999999999999999999999999999887 899999999999996 689999999999999999
Q ss_pred cEEEecCChHHHHHHHHhhcCCCCh-HHHHHHHHHHHHHHhhcC--CCceEEEEEecCce
Q 027555 159 KANATGRNSNSMREFLEKNYKETSG-QETIKLAIRALLEVCSFL--YFRMSLGMVITKYY 215 (222)
Q Consensus 159 ~~~a~G~g~~~~~~~Le~~~~~~ls-~ea~~l~~~~l~~~~~~d--~~~~~v~~v~~~~~ 215 (222)
+++|+|+|+++++++||++|+++|+ +||++++++||..+.+|+ ..+++|.+|++++.
T Consensus 160 ~~~aiGsgs~~a~~~Le~~~~~~ms~eea~~la~~al~~~~~~~~sg~~i~v~vi~~~~~ 219 (242)
T 1ryp_E 160 NAKAIGSGSEGAQAELLNEWHSSLTLKEAELLVLKILKQVMEEKLDENNAQLSCITKQDG 219 (242)
T ss_dssp SEEEESTTHHHHHHHHHHHCCTTCCHHHHHHHHHHHHHHHCSSCCCTTSEEEEEEETTTE
T ss_pred CEEEECCCCHHHHHHHHHhhccCCCHHHHHHHHHHHHHHHhhccCCCCcEEEEEEECCCC
Confidence 9999999999999999999999999 999999999999999985 67999999998886
No 18
>1iru_F 20S proteasome; cell cycle, immune response, proteolysis, ubiquitin, hydrolase; 2.75A {Bos taurus} SCOP: d.153.1.4 PDB: 3unb_E* 3une_E 3unf_E* 3unh_E
Probab=100.00 E-value=3.7e-58 Score=387.94 Aligned_cols=212 Identities=36% Similarity=0.580 Sum_probs=202.3
Q ss_pred CCCCCCCeeeCCCCccchhhhHHHHHhcCCcEEEEEeCCEEEEEEeecccccccccCccccEEEecCcEEEEEeccHHHH
Q 027555 2 ARYDRAITVFSPDGHLFQVEYALEAVRKGNAAVGVRGTDTIVLGVEKKSTVKLQDSRSVRKIVSLDNHIALACAGLKADA 81 (222)
Q Consensus 2 ~~yd~~~~~fsp~G~l~q~eya~~a~~~G~t~igi~~~dgVvla~d~~~~~~l~~~~~~~Ki~~i~~~i~~~~sG~~~D~ 81 (222)
++||+.+|+|||||||+|+|||+|++++|+|+|||+++||||||+|+|.++++. ++.+||++|+++|+|+++|..+|+
T Consensus 4 ~~yd~~~t~fsP~Grl~QvEYA~~av~~Gtt~vgi~~~dgVVlaaD~r~~~gl~--~~~~KI~~i~~~i~~~~aG~~aD~ 81 (263)
T 1iru_F 4 NQYDNDVTVWSPQGRIHQIEYAMEAVKQGSATVGLKSKTHAVLVALKRAQSELA--AHQKKILHVDNHIGISIAGLTADA 81 (263)
T ss_dssp CTTTSCTTCCCTTSCCHHHHHHHHHHHHSCCEEEEECSSEEEEEEECCCSSTTB--CCCCCEEEEETTEEEEEEECHHHH
T ss_pred CCCCCCCccCCCCCeehHHHHHHHHHHcCCcEEEEEeCCEEEEEEecccccccc--cchhcEEEEcCCEEEEEeCCHHHH
Confidence 479999999999999999999999999999999999999999999999998864 378999999999999999999999
Q ss_pred HHHHHHHHHHHHHhhhhcCCCCCHHHHHHHHHHHHHhhcccCCCccceeeeEEEEEeCCCCccEEEEECCCCceecccEE
Q 027555 82 RVLINRARIECQSHRLTVEDPVTVEYITRYIAGLQQKYTQSGGVRPFGLSTLIVGFDPYTGVPSLYQTDPSGTFSAWKAN 161 (222)
Q Consensus 82 ~~l~~~~~~~~~~~~~~~~~~i~~~~la~~ls~~~~~~~~~~~~rP~~v~~ivaG~d~~~~gp~ly~iD~~G~~~~~~~~ 161 (222)
+.+.+.++.+++.|+++++++++++.+|+++++++|.|+++.+.|||+|++|||||| ++||+||.+||+|++.+++++
T Consensus 82 ~~l~~~~~~~~~~~~~~~~~~i~v~~la~~l~~~l~~~t~~~~~RP~~v~~lvaG~D--~~gp~Ly~idp~G~~~~~~~~ 159 (263)
T 1iru_F 82 RLLCNFMRQECLDSRFVFDRPLPVSRLVSLIGSKTQIPTQRYGRRPYGVGLLIAGYD--DMGPHIFQTCPSANYFDCRAM 159 (263)
T ss_dssp HHHHHHHHHHHHHHHHHHSSCCCHHHHHHHHHHHHHHHHHBTTCCCCCEEEEEEEEE--TTEEEEEEECSSSCEEEESEE
T ss_pred HHHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHhhcccccccceEEEEEEEEc--CCCCEEEEECCCCCEEEeeEE
Confidence 999999999999999999999999999999999999999988999999999999999 478999999999999999999
Q ss_pred EecCChHHHHHHHHhhcCC--CCh-HHHHHHHHHHHHHHhhcC----CCceEEEEEecC-ceEE
Q 027555 162 ATGRNSNSMREFLEKNYKE--TSG-QETIKLAIRALLEVCSFL----YFRMSLGMVITK-YYEH 217 (222)
Q Consensus 162 a~G~g~~~~~~~Le~~~~~--~ls-~ea~~l~~~~l~~~~~~d----~~~~~v~~v~~~-~~~~ 217 (222)
|+|+|+++++++||++|++ +|+ +||++++++||..+++|| ..+++|.+|+++ +++.
T Consensus 160 aiGsgs~~a~~~Le~~~~~~~~ms~eea~~la~~al~~~~~rd~~~sg~~iev~vi~~~~~~~~ 223 (263)
T 1iru_F 160 SIGARSQSARTYLERHMSEFMECNLNELVKHGLRALRETLPAEQDLTTKNVSIGIVGKDLEFTI 223 (263)
T ss_dssp EESTTHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTTSCTTCCCCTTTEEEEEEETTEEEEE
T ss_pred EcCcccHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHHHHhccccCCCCcEEEEEEECCCCeEE
Confidence 9999999999999999998 999 999999999999999987 469999999987 5543
No 19
>1q5q_A Proteasome alpha-type subunit 1; proteasome assembly, Pro-peptide, inter-subunit contacts, RH erythropolis, hydrolase; 2.60A {Rhodococcus erythropolis} SCOP: d.153.1.4 PDB: 2h6j_A 1q5r_A
Probab=100.00 E-value=8.7e-49 Score=329.95 Aligned_cols=198 Identities=14% Similarity=0.205 Sum_probs=177.7
Q ss_pred CeeeCCCCccc-hhhhHHHHHhcCCcEEEEEeCCEEEEEEeecccccccccCccccEEEecCcEEEEEeccHHHHHHHHH
Q 027555 8 ITVFSPDGHLF-QVEYALEAVRKGNAAVGVRGTDTIVLGVEKKSTVKLQDSRSVRKIVSLDNHIALACAGLKADARVLIN 86 (222)
Q Consensus 8 ~~~fsp~G~l~-q~eya~~a~~~G~t~igi~~~dgVvla~d~~~~~~l~~~~~~~Ki~~i~~~i~~~~sG~~~D~~~l~~ 86 (222)
+.-|||||++. |+|||++++++|+|+|||+++||||||+|+| +++.+||++|++||+|+++|..+|++.|.+
T Consensus 4 p~~~sPe~~~~~qvEYA~~av~~Gtt~vgi~~~dgVVlaaD~r-------s~~~~KI~~I~d~i~~~~aG~~aD~~~l~~ 76 (259)
T 1q5q_A 4 PYYASAEQIMRDRSELARKGIARGRSVVVLTFRDGVLFVAENP-------STALHKVSELYDRLGFAAVGKYNEFENLRR 76 (259)
T ss_dssp -----CHHHHHHHHHHHHHHHHTSCCEEEEECSSEEEEEECCS-------CSSSCSEEEEETTEEEEEEECHHHHHHHHH
T ss_pred CcccCHHHHHHHHHHHHHHHHhcCCcEEEEEeCCEEEEEEecC-------CCCcCcEEEeCCCEEEEEccCHHHHHHHHH
Confidence 45689999995 9999999999999999999999999999998 357899999999999999999999999999
Q ss_pred HHHHHHHHhhhhcC-CCCCHHHHHHHHHH-HHHhhcccCCCccceeeeEEEEEe--CCCCccEEEEECCCCcee-cccEE
Q 027555 87 RARIECQSHRLTVE-DPVTVEYITRYIAG-LQQKYTQSGGVRPFGLSTLIVGFD--PYTGVPSLYQTDPSGTFS-AWKAN 161 (222)
Q Consensus 87 ~~~~~~~~~~~~~~-~~i~~~~la~~ls~-~~~~~~~~~~~rP~~v~~ivaG~d--~~~~gp~ly~iD~~G~~~-~~~~~ 161 (222)
.++.+++.|++.++ ++++++.+|+++++ +.|.|+. ++|||+|++|||||| +.++||+||.+||+|++. .++++
T Consensus 77 ~~~~~~~~~~~~~~~~~i~v~~la~~l~~~l~q~yt~--~~rP~~v~~lvaG~D~~~~~~gp~Ly~idp~G~~~~~~~~~ 154 (259)
T 1q5q_A 77 AGIVHADMRGYSYDRRDVTGRSLANAYAQTLGTIFTE--QPKPYEVEICVAEVGRVGSPKAPQLYRITYDGSIVDEQHFV 154 (259)
T ss_dssp HHHHHHHHHHHHSCGGGCCHHHHHHHHHHHHHHHHHH--SSSCCCEEEEEEECCCSSCCCCCEEEEEETTSCEEEESSEE
T ss_pred HHHHHHHHHHHHcCCcCCCHHHHHHHHHHHHHHHhcc--CCCCceEEEEEEEEcccCCCCCCEEEEECCCCceeeCCCEE
Confidence 99999999999988 49999999999999 6677773 689999999999999 223789999999999999 78999
Q ss_pred EecCChHHHHHHHHhhcCCCCh-HHHHHHHHHHHHHHh-----hcC--CCceEEEEEecCc
Q 027555 162 ATGRNSNSMREFLEKNYKETSG-QETIKLAIRALLEVC-----SFL--YFRMSLGMVITKY 214 (222)
Q Consensus 162 a~G~g~~~~~~~Le~~~~~~ls-~ea~~l~~~~l~~~~-----~~d--~~~~~v~~v~~~~ 214 (222)
++|++++.++++||++|+++|+ +||++++++||..++ +|| ..+++|.||++++
T Consensus 155 aiG~gs~~a~~~Le~~~~~~ms~eea~~la~~al~~~~~~~~~~rd~sg~~iev~vi~~~~ 215 (259)
T 1q5q_A 155 VMGGTTEPIATAMRESYRADLDLEAAVGIAVNALRQGGAGEGEKRNVDVASLEVAVLDQSR 215 (259)
T ss_dssp EESSSHHHHHHHHHHHCCTTCCHHHHHHHHHHHHTTCC--------CCSSCSEEEEEETTS
T ss_pred EECCChHHHHHHHHhhccCCCCHHHHHHHHHHHHHHHhhcccccccCCCCcEEEEEEECCC
Confidence 9999999999999999999999 999999999999999 777 6799999999883
No 20
>3mi0_A Proteasome subunit alpha; enzyme inhibitors, lactones, proteasome endopeptidase comple mycobacterium tuberculosis, hydrolase; HET: SA6; 2.20A {Mycobacterium tuberculosis} SCOP: d.153.1.4 PDB: 3h6f_A 3krd_A* 3h6i_A* 3mka_A 2fhh_A* 2fhg_A 3hfa_D 3hf9_A 3mfe_D
Probab=100.00 E-value=9.3e-47 Score=315.36 Aligned_cols=187 Identities=17% Similarity=0.248 Sum_probs=173.0
Q ss_pred hhhhHHHHHhcCCcEEEEEeCCEEEEEEeecccccccccCccccEEEecCcEEEEEeccHHHHHHHHHHHHHHHHHhhhh
Q 027555 19 QVEYALEAVRKGNAAVGVRGTDTIVLGVEKKSTVKLQDSRSVRKIVSLDNHIALACAGLKADARVLINRARIECQSHRLT 98 (222)
Q Consensus 19 q~eya~~a~~~G~t~igi~~~dgVvla~d~~~~~~l~~~~~~~Ki~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~ 98 (222)
++|||+||+++|+|+|||+++||||||+|+| +++.+|||+|++||+|+++|..+|++.|.+.++.+++.|+++
T Consensus 16 r~EYA~~av~~GtT~vgi~~kdgVVlaadkr-------~~~~~KI~~I~d~i~~~~aG~~aD~~~l~~~~~~~~~l~~~~ 88 (248)
T 3mi0_A 16 RSELARKGIARAKSVVALAYAGGVLFVAENP-------SRSLQKISELYDRVGFAAAGKFNEFDNLRRGGIQFADTRGYA 88 (248)
T ss_dssp HHHHHHHHHHTSCCEEEEEETTEEEEEEECC-------CSSSCSEEEEETTEEEEEEECHHHHHHHHHHHHHHHHHHHHH
T ss_pred chHHHHHHHhCCCcEEEEEeCCEEEEEEeCC-------CCCCCCeEEECCCEEEEEccCHHHHHHHHHHHHHHHHHHHHh
Confidence 5799999999999999999999999999999 347899999999999999999999999999999999999999
Q ss_pred cC-CCCCHHHHHHHHH-HHHHhhcccCCCccceeeeEEEEEeC--CCCccEEEEECCCCceec-ccEEEecCChHHHHHH
Q 027555 99 VE-DPVTVEYITRYIA-GLQQKYTQSGGVRPFGLSTLIVGFDP--YTGVPSLYQTDPSGTFSA-WKANATGRNSNSMREF 173 (222)
Q Consensus 99 ~~-~~i~~~~la~~ls-~~~~~~~~~~~~rP~~v~~ivaG~d~--~~~gp~ly~iD~~G~~~~-~~~~a~G~g~~~~~~~ 173 (222)
++ ++++++.||++++ .+.|.|++ ++|||+|++||||||+ ..+||+||++||+|++.. ++++|+|+|++.++++
T Consensus 89 ~~~~~i~v~~la~~l~~~l~q~yt~--~~rP~gv~~liaG~D~~~~~~gp~Ly~~Dp~G~~~~e~~~~a~Gsgs~~a~~~ 166 (248)
T 3mi0_A 89 YDRRDVTGRQLANVYAQTLGTIFTE--QAKPYEVELCVAEVAHYGETKRPELYRITYDGSIADEPHFVVMGGTTEPIANA 166 (248)
T ss_dssp SCGGGCCHHHHHHHHHHHHHHHHHH--SSSCCCEEEEEEECCCTTCCCCCEEEEECTTSCEEEESSEEEESSCHHHHHHH
T ss_pred cCCCCCCHHHHHHHHHHHHHHHhcc--CCCCceEEEEEEEEcCCCCCCCCEEEEECCCeEEeecccEEEECccHHHHHHH
Confidence 99 8999999999999 77788887 6899999999999995 138999999999999995 9999999999999999
Q ss_pred HHhhcCCCCh-HHHHHHHHHHHHHHh-------hcC--CCceEEEEEecCc
Q 027555 174 LEKNYKETSG-QETIKLAIRALLEVC-------SFL--YFRMSLGMVITKY 214 (222)
Q Consensus 174 Le~~~~~~ls-~ea~~l~~~~l~~~~-------~~d--~~~~~v~~v~~~~ 214 (222)
||++|+++|+ +||++++++||..++ +++ ..+++|.||+.++
T Consensus 167 Le~~y~~~mt~eeai~la~~aL~~~~~~~~~~~~~~~~~~~iev~vv~~~g 217 (248)
T 3mi0_A 167 LKESYAENASLTDALRIAVAALRAGSADTSGGDQPTLGVASLEVAVLDANR 217 (248)
T ss_dssp HHHHCCTTCCHHHHHHHHHHHHHHC------------CCTTEEEEEEETTS
T ss_pred HHhhcCCCCCHHHHHHHHHHHHHHHHhhcccCcccccCCCcEEEEEEECCC
Confidence 9999999999 999999999999999 555 6899999999887
No 21
>1ryp_H 20S proteasome; multicatalytic proteinase, protein degradation, antigen processing, hydrolase, protease; 1.90A {Saccharomyces cerevisiae} SCOP: d.153.1.4 PDB: 3nzj_N* 3nzw_N* 3nzx_N* 1vsy_H 3l5q_B 1g65_N* 1fnt_H 1g0u_N* 1jd2_N* 1z7q_H 2f16_N* 2fak_N* 2fny_N* 2gpl_N* 2zcy_N* 3bdm_N* 3d29_N* 3dy3_N* 3dy4_N* 3e47_N* ...
Probab=100.00 E-value=1.8e-45 Score=299.76 Aligned_cols=190 Identities=15% Similarity=0.229 Sum_probs=180.4
Q ss_pred HHHHhcCCcEEEEEeCCEEEEEEeeccccc-ccccCccccEEEecCcEEEEEeccHHHHHHHHHHHHHHHHHhhhhcCCC
Q 027555 24 LEAVRKGNAAVGVRGTDTIVLGVEKKSTVK-LQDSRSVRKIVSLDNHIALACAGLKADARVLINRARIECQSHRLTVEDP 102 (222)
Q Consensus 24 ~~a~~~G~t~igi~~~dgVvla~d~~~~~~-l~~~~~~~Ki~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~ 102 (222)
++++++|+|+|||+++||||||+|+|.+++ ++.+++.+||++|++|++|+++|..+|++.+.++++.+++.|++++++
T Consensus 3 ~~av~~Gtt~vgi~~~dgVvlaaD~r~~~g~~~~~~~~~Ki~~i~~~i~~~~aG~~aD~~~l~~~~~~~~~~~~~~~~~- 81 (205)
T 1ryp_H 3 KGEVSLGASIMAVTFKDGVILGADSRTTTGAYIANRVTDKLTRVHDKIWCCRSGSAADTQAIADIVQYHLELYTSQYGT- 81 (205)
T ss_dssp TTCCBCCCCEEEEEETTEEEEEECCCEEETTEEEESSCCCEEEEETTEEEEEEEBHHHHHHHHHHHHHHHHHHHHHHSS-
T ss_pred CCCCcCCceEEEEEeCCEEEEEEcCCcccCcEEEcCCcCceEEcCCCEEEEccCCHHHHHHHHHHHHHHHHHHHHHhCC-
Confidence 578899999999999999999999999986 777889999999999999999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHHhhcccCCCccceeeeEEEEEeCCCCccEEEEECCCCceecccEEEecCChHHHHHHHHhhcCCCC
Q 027555 103 VTVEYITRYIAGLQQKYTQSGGVRPFGLSTLIVGFDPYTGVPSLYQTDPSGTFSAWKANATGRNSNSMREFLEKNYKETS 182 (222)
Q Consensus 103 i~~~~la~~ls~~~~~~~~~~~~rP~~v~~ivaG~d~~~~gp~ly~iD~~G~~~~~~~~a~G~g~~~~~~~Le~~~~~~l 182 (222)
++++.+|+++++++|++++. |++++||||||+ ++||+||.+||+|++.+++++|+|+|+++++++||++|+++|
T Consensus 82 ~~v~~la~~l~~~~~~~~~~-----~~~~~lvaG~D~-~~gp~Ly~id~~G~~~~~~~~aiGsgs~~a~~~Le~~~~~~~ 155 (205)
T 1ryp_H 82 PSTETAASVFKELCYENKDN-----LTAGIIVAGYDD-KNKGEVYTIPLGGSVHKLPYAIAGSGSTFIYGYCDKNFRENM 155 (205)
T ss_dssp CCHHHHHHHHHHHHHHTTTT-----CCEEEEEEEEET-TTEEEEEEECTTSCCEEESEEEESGGGGGGHHHHHHHCCTTC
T ss_pred CCHHHHHHHHHHHHHhhhcC-----ceEEEEEEEEec-CCCcEEEEECCCccEEecCEEEEEecHHHHHHHHHhccCCCC
Confidence 99999999999999998652 999999999996 578999999999999999999999999999999999999999
Q ss_pred h-HHHHHHHHHHHHHHhhcC---CCceEEEEEecCceEEeee
Q 027555 183 G-QETIKLAIRALLEVCSFL---YFRMSLGMVITKYYEHLYY 220 (222)
Q Consensus 183 s-~ea~~l~~~~l~~~~~~d---~~~~~v~~v~~~~~~~~~~ 220 (222)
+ +||++++++||..+.+|| ..+++|.+|+++++++..+
T Consensus 156 s~eea~~l~~~al~~a~~~d~~sg~~i~v~vi~~~g~~~~~~ 197 (205)
T 1ryp_H 156 SKEETVDFIKHSLSQAIKWDGSSGGVIRMVVLTAAGVERLIF 197 (205)
T ss_dssp CHHHHHHHHHHHHHHHHHHBTTCCSCEEEEEEETTEEEEEEE
T ss_pred CHHHHHHHHHHHHHHHHHhCCccCCeEEEEEEcCCCEEEEEe
Confidence 9 999999999999999998 5799999999999988654
No 22
>1iru_M 20S proteasome; cell cycle, immune response, proteolysis, ubiquitin, hydrolase; 2.75A {Bos taurus} SCOP: d.153.1.4 PDB: 3unb_L* 3une_L 3unf_L* 3unh_L
Probab=100.00 E-value=1e-44 Score=296.76 Aligned_cols=189 Identities=15% Similarity=0.256 Sum_probs=177.1
Q ss_pred HhcCCcEEEEEeCCEEEEEEeecccccc-cccCccccEEEecCcEEEEEeccHHHHHHHHHHHHHHHHHhhhhcCCCCCH
Q 027555 27 VRKGNAAVGVRGTDTIVLGVEKKSTVKL-QDSRSVRKIVSLDNHIALACAGLKADARVLINRARIECQSHRLTVEDPVTV 105 (222)
Q Consensus 27 ~~~G~t~igi~~~dgVvla~d~~~~~~l-~~~~~~~Ki~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~i~~ 105 (222)
+++|+|+|||+++||||||+|+|.++++ +.+++.+||++|+++|+|++||..+|++.+.+.++.+++.|++++++++++
T Consensus 6 v~~Gtt~vgi~~~dgVvlaaD~r~~~g~~~~~~~~~Ki~~i~~~i~~~~aG~~aD~~~l~~~~~~~~~~~~~~~~~~~~v 85 (213)
T 1iru_M 6 VFNGGTILAIAGEDFAIVASDTRLSEGFSIHTRDSPKCYKLTDKTVIGCSGFHGDCLTLTKIIEARLKMYKHSNNKAMTT 85 (213)
T ss_dssp CCCCCEEEEEEETTEEEEEEECCEEETTEEEESCCCCEEEEETTEEEEEEECHHHHHHHHHHHHHHHHHHHHHHSSCCCH
T ss_pred cCCCCcEEEEEeCCEEEEEECCCcccCCEEecCCCCcEEEcCCCEEEEccccHHHHHHHHHHHHHHHHHHHHhcCCCCCH
Confidence 4789999999999999999999999864 556789999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhhcccCCCccceeeeEEEEEeCCCCccEEEEECCCCceecccEEEecCChHHHHHHHHhh--------
Q 027555 106 EYITRYIAGLQQKYTQSGGVRPFGLSTLIVGFDPYTGVPSLYQTDPSGTFSAWKANATGRNSNSMREFLEKN-------- 177 (222)
Q Consensus 106 ~~la~~ls~~~~~~~~~~~~rP~~v~~ivaG~d~~~~gp~ly~iD~~G~~~~~~~~a~G~g~~~~~~~Le~~-------- 177 (222)
+.+|++++++++ +++ .|||++++||||||+ +++|+||.+||+|++.+++++|+|+|+++++++||+.
T Consensus 86 ~~la~~l~~~~y--~~r--~~P~~v~~lvaG~D~-~g~p~Ly~id~~G~~~~~~~~aiGsg~~~a~~~Le~~~~~~~~~~ 160 (213)
T 1iru_M 86 GAIAAMLSTILY--SRR--FFPYYVYNIIGGLDE-EGKGAVYSFDPVGSYQRDSFKAGGSASAMLQPLLDNQVGFKNMQN 160 (213)
T ss_dssp HHHHHHHHHHHH--HTT--TSCCCEEEEEEEECT-TSCEEEEEECTTSCEEEESEEEEETTHHHHHHHHHHHTTCCSCSS
T ss_pred HHHHHHHHHHHH--hhC--CCCceEEEEEEEEcC-CCCEEEEEECCCCCEEECCEEEEeeCHHHHHHHHhhccccccccc
Confidence 999999999995 443 799999999999996 5679999999999999999999999999999999999
Q ss_pred -cCCCCh-HHHHHHHHHHHHHHhhcC---CCceEEEEEecCceEEeee
Q 027555 178 -YKETSG-QETIKLAIRALLEVCSFL---YFRMSLGMVITKYYEHLYY 220 (222)
Q Consensus 178 -~~~~ls-~ea~~l~~~~l~~~~~~d---~~~~~v~~v~~~~~~~~~~ 220 (222)
|+++|+ +||++++++||..+.+|| ..+++|.+|++++++...+
T Consensus 161 ~~~~~~s~eea~~l~~~al~~~~~~d~~s~~~i~v~vi~~~g~~~~~~ 208 (213)
T 1iru_M 161 VEHVPLSLDRAMRLVKDVFISAAERDVYTGDALRICIVTKEGIREETV 208 (213)
T ss_dssp CCCCCCCHHHHHHHHHHHHHHHHHHBTTSCSEEEEEEEETTEEEEEEE
T ss_pred cCCCCCCHHHHHHHHHHHHHHHHHhCCccCCcEEEEEEcCCCeEEEEe
Confidence 889999 999999999999999998 6799999999999988755
No 23
>3h4p_a Proteasome subunit beta; core particle, cytoplasm, hydrolase, protease, threonine protease; 4.10A {Methanocaldococcus jannaschii}
Probab=100.00 E-value=4.3e-45 Score=300.43 Aligned_cols=184 Identities=22% Similarity=0.304 Sum_probs=174.4
Q ss_pred CCcEEEEEeCCEEEEEEeeccccc-ccccCccccEEEecCcEEEEEeccHHHHHHHHHHHHHHHHHhhhhcCCCCCHHHH
Q 027555 30 GNAAVGVRGTDTIVLGVEKKSTVK-LQDSRSVRKIVSLDNHIALACAGLKADARVLINRARIECQSHRLTVEDPVTVEYI 108 (222)
Q Consensus 30 G~t~igi~~~dgVvla~d~~~~~~-l~~~~~~~Ki~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~i~~~~l 108 (222)
|+|+|||+++||||||+|+|.+++ ++.+++.+||++|++||+|+++|..+|++.+.++++.+++.|+++++++++++.+
T Consensus 1 Gtt~vgi~~~dgVvlaaD~r~~~g~~i~~~~~~KI~~i~~~i~~~~aG~~aD~~~l~~~~~~~~~~~~~~~~~~~~v~~l 80 (219)
T 3h4p_a 1 MTTTVGLICDDAVILATDKRASLGNLVADKEAKKLYKIDDYIAMTIAGSVGDAQAIVRLLIAEAKLYKMRTGRNIPPLAC 80 (219)
T ss_dssp -CCEEEEEETTEEEEECCCCEEETTEEEETTCCCEEEEETTEEEECCSCHHHHHHHHHHHHHHHHHHHHHTSSCCCHHHH
T ss_pred CccEEEEEECCEEEEEEcCCcccCCEeeccccceeEEecCCEEEEeeEcHHHHHHHHHHHHHHHHHHHHHcCCCCCHHHH
Confidence 799999999999999999999985 7778899999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhhcccCCCccceeeeEEEEEeCCCCccEEEEECCCCceeccc-EEEecCChHHHHHHHHhhcCCCCh-HHH
Q 027555 109 TRYIAGLQQKYTQSGGVRPFGLSTLIVGFDPYTGVPSLYQTDPSGTFSAWK-ANATGRNSNSMREFLEKNYKETSG-QET 186 (222)
Q Consensus 109 a~~ls~~~~~~~~~~~~rP~~v~~ivaG~d~~~~gp~ly~iD~~G~~~~~~-~~a~G~g~~~~~~~Le~~~~~~ls-~ea 186 (222)
|+++++++|++ +.|||+|++||||||+ ++||+||.+||+|++.+++ ++|+|+|+++++++||++|+++|+ +||
T Consensus 81 a~~l~~~~~~~----~~~P~~v~~lvaG~D~-~~gp~Ly~idp~G~~~~~~~~~aiG~gs~~a~~~Le~~~~~~ms~eea 155 (219)
T 3h4p_a 81 ATLLSNILHSS----RMFPFLTQIIIGGYDL-LEGAKLFSLDPLGGMNEEKTFTATGSGSPIAYGVLEAGYDRDMSVEEG 155 (219)
T ss_dssp HHHHHHHHHHT----TTTTCCCCCEEEEEET-TTEEEEEEECSSCCEEECSSEEEESTTHHHHHHHHHTSCCTTCCHHHH
T ss_pred HHHHHHHHHHh----cCCCceEEEEEEEEeC-CCCcEEEEECCCCceEecCCEEEEcCCHHHHHHHHHHhcCCCCCHHHH
Confidence 99999999976 3689999999999996 5899999999999999998 999999999999999999999999 999
Q ss_pred HHHHHHHHHHHhhcC---CCceEEEEEecCceEEe
Q 027555 187 IKLAIRALLEVCSFL---YFRMSLGMVITKYYEHL 218 (222)
Q Consensus 187 ~~l~~~~l~~~~~~d---~~~~~v~~v~~~~~~~~ 218 (222)
++++++||..+++|| ..+++|.+|+.++++.+
T Consensus 156 ~~la~~al~~~~~rd~~sg~~i~v~vi~~~g~~~l 190 (219)
T 3h4p_a 156 IKLALNALKSAMERDTFSGNGISLAVITKDGVKIF 190 (219)
T ss_dssp HHHHHHHHHHHHTSCSSCCSCCCEEEEETTEEEEC
T ss_pred HHHHHHHHHHHHhhcCCCCCcEEEEEEeCCCeEEc
Confidence 999999999999998 57999999999988763
No 24
>3nzj_K Proteasome component PRE2; ubiquitin, protein degradation, N-terminal nucleophilic HYDR 19S regulatory particle; HET: TY5 TRO MES; 2.40A {Saccharomyces cerevisiae} PDB: 3nzw_K* 3nzx_K* 4b4t_5
Probab=100.00 E-value=7.2e-45 Score=309.60 Aligned_cols=202 Identities=19% Similarity=0.273 Sum_probs=175.3
Q ss_pred CCCCccchh------hhHHHHHhcCCcEEEEEeCCEEEEEEeecccc-cccccCccccEEEecCcEEEEEeccHHHHHHH
Q 027555 12 SPDGHLFQV------EYALEAVRKGNAAVGVRGTDTIVLGVEKKSTV-KLQDSRSVRKIVSLDNHIALACAGLKADARVL 84 (222)
Q Consensus 12 sp~G~l~q~------eya~~a~~~G~t~igi~~~dgVvla~d~~~~~-~l~~~~~~~Ki~~i~~~i~~~~sG~~~D~~~l 84 (222)
+|+..+-+. .++.+++.+|+|+|||+++||||||+|+|.+. .++.+++.+||++|+++|+|+++|..+|++.+
T Consensus 51 ~p~~~~~~~~~~~~~~~~~~~v~~GtT~vgik~~dGVVlAaD~r~t~G~li~~~~~~KI~~I~d~i~~~~aG~~AD~~~l 130 (287)
T 3nzj_K 51 SPQQFLRAHTDDSRNPDCKIKIAHGTTTLAFRFQGGIIVAVDSRATAGNWVASQTVKKVIEINPFLLGTMAGGAADCQFW 130 (287)
T ss_dssp -------------------------CCEEEEEETTEEEEEECCCEEETTEEEESCCCCEEEEETTEEEECEECHHHHHHH
T ss_pred CHHHHHHHhcccccccchhhheccCceEEEEEECCEEEEEEccccccCceeecCCcceEEEEcCcEEEEecCCHHHHHHH
Confidence 555555444 37788999999999999999999999999998 57788899999999999999999999999999
Q ss_pred HHHHHHHHHHhhhhcCCCCCHHHHHHHHHHHHHhhcccCCCccceeeeEEEEEeCCCCccEEEEECCCCceecccEEEec
Q 027555 85 INRARIECQSHRLTVEDPVTVEYITRYIAGLQQKYTQSGGVRPFGLSTLIVGFDPYTGVPSLYQTDPSGTFSAWKANATG 164 (222)
Q Consensus 85 ~~~~~~~~~~~~~~~~~~i~~~~la~~ls~~~~~~~~~~~~rP~~v~~ivaG~d~~~~gp~ly~iD~~G~~~~~~~~a~G 164 (222)
.++++.+++.|+++++++++++.+|+++++++|.+++ +||++++||||||+ ++||+||.+||+|++.+++++|+|
T Consensus 131 ~~~lr~~~~~y~~~~~~~isv~~la~~ls~~l~~~r~----~p~~v~~lvaG~D~-~~gp~Ly~iDp~G~~~~~~~~AiG 205 (287)
T 3nzj_K 131 ETWLGSQCRLHELREKERISVAAASKILSNLVYQYKG----AGLSMGTMICGYTR-KEGPTIYYVDSDGTRLKGDIFCVG 205 (287)
T ss_dssp HHHHHHHHHHHHHHHSSCCCHHHHHHHHHHHHHHTTT----SCCCEEEEEEEEET-TTEEEEEEEETTCCEEECSEEEES
T ss_pred HHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHhhcC----CCceEEEEEEEEcC-CCCCEEEEECCCceEEEcCeEEEe
Confidence 9999999999999999999999999999999998764 49999999999997 689999999999999999999999
Q ss_pred CChHHHHHHHHhhcCCCCh-HHHHHHHHHHHHHHhhcC---CCceEEEEEecCceEEe
Q 027555 165 RNSNSMREFLEKNYKETSG-QETIKLAIRALLEVCSFL---YFRMSLGMVITKYYEHL 218 (222)
Q Consensus 165 ~g~~~~~~~Le~~~~~~ls-~ea~~l~~~~l~~~~~~d---~~~~~v~~v~~~~~~~~ 218 (222)
+|+++++++||+.|+++|+ +||++++++||..+.+|| ..+++|.+|++++++.+
T Consensus 206 sgs~~a~~~Le~~y~~dms~eEAi~la~~aL~~a~~rD~~sg~~i~V~vItkdg~~~l 263 (287)
T 3nzj_K 206 SGQTFAYGVLDSNYKWDLSVEDALYLGKRSILAAAHRDAYSGGSVNLYHVTEDGWIYH 263 (287)
T ss_dssp TTHHHHHHHHHTSCCTTCCHHHHHHHHHHHHHHHHHHBTTCCSEEEEEEEETTEEEEE
T ss_pred cchHHHHHHHHHhhcCCCCHHHHHHHHHHHHHHHHhhCcCCCCceEEEEEeCCCEEEe
Confidence 9999999999999999999 999999999999999998 57999999999998864
No 25
>1yar_H Proteasome beta subunit; proteasome 20S, PA26 proteasome activator 11S, hydrolase-HYD activator complex; 1.90A {Thermoplasma acidophilum} SCOP: d.153.1.4 PDB: 1ya7_H 1yau_H 3ipm_H 1pma_B 3jrm_H 3c92_H 3c91_H 3jse_H 3jtl_H
Probab=100.00 E-value=1.8e-44 Score=296.30 Aligned_cols=186 Identities=21% Similarity=0.336 Sum_probs=171.9
Q ss_pred HHHhcCCcEEEEEeCCEEEEEEeecccc-cccccCccccEEEecCcEEEEEeccHHHHHHHHHHHHHHHHHhhhhcCCCC
Q 027555 25 EAVRKGNAAVGVRGTDTIVLGVEKKSTV-KLQDSRSVRKIVSLDNHIALACAGLKADARVLINRARIECQSHRLTVEDPV 103 (222)
Q Consensus 25 ~a~~~G~t~igi~~~dgVvla~d~~~~~-~l~~~~~~~Ki~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~i 103 (222)
.++++|+|+|||+++||||||+|+|.++ +++.+++.+||++|+++++|+++|..+|++.+.++++.+++.|++++++++
T Consensus 3 ~~~~~Gtt~vgi~~~dgVvlaaD~r~~~g~l~~~~~~~Ki~~i~~~i~~~~aG~~aD~~~l~~~~~~~~~~~~~~~~~~~ 82 (217)
T 1yar_H 3 QTLETGTTTVGITLKDAVIMATERRVTMENFIMHKNGKKLFQIDTYTGMTIAGLVGDAQVLVRYMKAELELYRLQRRVNM 82 (217)
T ss_dssp ------CCEEEEEETTEEEEEECCCEEETTEEEESCCCCEEEEETTEEEEEEECHHHHHHHHHHHHHHHHHHHHHHSSCC
T ss_pred CCCCCCccEEEEEeCCEEEEEEcCCCCCCCEEecCccCCeEEeCCCEEEEeCcCHHHHHHHHHHHHHHHHHHHHHHCCCC
Confidence 4678999999999999999999999998 588888999999999999999999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHHhhcccCCCccceeeeEEEEEeCCCCccEEEEECCCCceecccEEEecCChHHHHHHHHhhcCCCCh
Q 027555 104 TVEYITRYIAGLQQKYTQSGGVRPFGLSTLIVGFDPYTGVPSLYQTDPSGTFSAWKANATGRNSNSMREFLEKNYKETSG 183 (222)
Q Consensus 104 ~~~~la~~ls~~~~~~~~~~~~rP~~v~~ivaG~d~~~~gp~ly~iD~~G~~~~~~~~a~G~g~~~~~~~Le~~~~~~ls 183 (222)
+++.+|+++++.+|.+ +.|||+|++|||||| +||+||.+||+|++.+++++|+|+|+++++++||+.|+++|+
T Consensus 83 ~v~~la~~l~~~~~~~----r~rp~~v~~lvaG~D---~gp~Ly~idp~G~~~~~~~~aiGsgs~~a~~~Le~~~~~~~s 155 (217)
T 1yar_H 83 PIEAVATLLSNMLNQV----KYMPYMVQLLVGGID---TAPHVFSIDAAGGSVEDIYASTGSGSPFVYGVLESQYSEKMT 155 (217)
T ss_dssp CHHHHHHHHHHHHHHT----TTSCCCEEEEEEEES---SSEEEEEECTTCCEEEESEEEESTTHHHHHHHHHHHCCTTCC
T ss_pred CHHHHHHHHHHHHHhc----CCCCceEEEEEEEEC---CCCEEEEECCCCCeEecCEEEEcCCHHHHHHHHHhhcccCCC
Confidence 9999999999999874 378999999999998 579999999999999999999999999999999999999999
Q ss_pred -HHHHHHHHHHHHHHhhcC---CCceEEEEEec-CceEE
Q 027555 184 -QETIKLAIRALLEVCSFL---YFRMSLGMVIT-KYYEH 217 (222)
Q Consensus 184 -~ea~~l~~~~l~~~~~~d---~~~~~v~~v~~-~~~~~ 217 (222)
+||++++++||..+.+|| ..++++.+|++ ++++.
T Consensus 156 ~eea~~la~~al~~~~~rd~~s~~~i~v~vi~~~~g~~~ 194 (217)
T 1yar_H 156 VDEGVDLVIRAISAAKQRDSASGGMIDVAVITRKDGYVQ 194 (217)
T ss_dssp HHHHHHHHHHHHHHHHHHCTTCCSCCEEEEEETTTEEEE
T ss_pred HHHHHHHHHHHHHHHHhccCCCCCcEEEEEEECCCCEEE
Confidence 999999999999999998 57899999998 78765
No 26
>1iru_N 20S proteasome; cell cycle, immune response, proteolysis, ubiquitin, hydrolase; 2.75A {Bos taurus} SCOP: d.153.1.4 PDB: 3unb_M* 3une_M 3unf_M* 3unh_M
Probab=100.00 E-value=5.8e-45 Score=299.54 Aligned_cols=189 Identities=18% Similarity=0.182 Sum_probs=178.4
Q ss_pred HHHhcCCcEEEEEeCCEEEEEEeecccc-cccccCccccEEEecCcEEEEEeccHHHHHHHHHHHHHHHHHhhh-hcCCC
Q 027555 25 EAVRKGNAAVGVRGTDTIVLGVEKKSTV-KLQDSRSVRKIVSLDNHIALACAGLKADARVLINRARIECQSHRL-TVEDP 102 (222)
Q Consensus 25 ~a~~~G~t~igi~~~dgVvla~d~~~~~-~l~~~~~~~Ki~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~-~~~~~ 102 (222)
+++++|+|+|||+++||||||+|+|.++ .++.+++.+||++|+++++|+++|..+|++.+.+.++.+++.|++ +++++
T Consensus 3 ~av~~Gtt~vgi~~~dgVvlaaD~r~~~g~~~~~~~~~Ki~~i~~~i~~~~aG~~aD~~~l~~~~~~~~~~~~~~~~~~~ 82 (219)
T 1iru_N 3 NPMVTGTSVLGVKFEGGVVIAADMLGSYGSLARFRNISRIMRVNNSTMLGASGDYADFQYLKQVLGQMVIDEELLGDGHS 82 (219)
T ss_dssp SCCSEECCCEEEEETTEEEEEEECCEEETTEEEECSCCCEEEETTTEEEEEEEEHHHHHHHHHHHHHHHHHHHHHCSSCC
T ss_pred CCccCCceEEEEEeCCEEEEEECCccccCcEEecCCCCceEEeCCCEEEEeccCHHHHHHHHHHHHHHHHHHHHHHcCCC
Confidence 5788999999999999999999999998 577788999999999999999999999999999999999999998 99999
Q ss_pred CCHHHHHHHHHHHHHhhcccCCCccceeeeEEEEEeCCCCccEEEEECCCCceecccEEEecCChHHHHHHHHhhcCC--
Q 027555 103 VTVEYITRYIAGLQQKYTQSGGVRPFGLSTLIVGFDPYTGVPSLYQTDPSGTFSAWKANATGRNSNSMREFLEKNYKE-- 180 (222)
Q Consensus 103 i~~~~la~~ls~~~~~~~~~~~~rP~~v~~ivaG~d~~~~gp~ly~iD~~G~~~~~~~~a~G~g~~~~~~~Le~~~~~-- 180 (222)
++++.+|+++++.++. ++.++|||+|++||||||+ +||+||.+||+|++.+++++++|+|+++++++||+.|++
T Consensus 83 ~~v~~la~~l~~~ly~--~r~~~~P~~v~~lvaG~D~--~gp~Ly~id~~G~~~~~~~~aiGsgs~~a~~~Le~~~~~~~ 158 (219)
T 1iru_N 83 YSPRAIHSWLTRAMYS--RRSKMNPLWNTMVIGGYAD--GESFLGYVDMLGVAYEAPSLATGYGAYLAQPLLREVLEKQP 158 (219)
T ss_dssp CCHHHHHHHHHHHHHH--HHHTTCCCCEEEEEEEEET--TEEEEEEECSSCCEEECSEEECTTHHHHTHHHHHHHHTSCS
T ss_pred CCHHHHHHHHHHHHHH--hcccCCCceEEEEEEEEEC--CCCEEEEECCCCCeEECCeEEECccHHHHHHHHHhhcCCCC
Confidence 9999999999999965 4556899999999999994 699999999999999999999999999999999999999
Q ss_pred CCh-HHHHHHHHHHHHHHhhcC---CCceEEEEEecCceEE
Q 027555 181 TSG-QETIKLAIRALLEVCSFL---YFRMSLGMVITKYYEH 217 (222)
Q Consensus 181 ~ls-~ea~~l~~~~l~~~~~~d---~~~~~v~~v~~~~~~~ 217 (222)
+|+ +||++++++||..+.+|| ..+++|.+|++++++.
T Consensus 159 ~mt~eea~~l~~~al~~~~~~d~~sg~~i~v~vi~~~g~~~ 199 (219)
T 1iru_N 159 VLSQTEARDLVERCMRVLYYRDARSYNRFQTATVTEKGVEI 199 (219)
T ss_dssp CCCHHHHHHHHHHHHHHHHHHBTTCCSCEEEEEEETTEEEE
T ss_pred CCCHHHHHHHHHHHHHHHHHhcCcCCCcEEEEEEcCCCEEE
Confidence 999 999999999999999998 5799999999998765
No 27
>1ryp_K 20S proteasome; multicatalytic proteinase, protein degradation, antigen processing, hydrolase, protease; 1.90A {Saccharomyces cerevisiae} SCOP: d.153.1.4 PDB: 1fnt_K 1g0u_J* 1jd2_J* 1g65_J 1vsy_K 1z7q_K 2f16_J* 2fak_J* 2fny_J* 2gpl_J* 2zcy_J* 3bdm_J* 3d29_J* 3dy3_J* 3dy4_J* 3e47_J* 3gpj_J* 3gpt_J* 3gpw_J* 3hye_J* ...
Probab=100.00 E-value=3.9e-44 Score=290.21 Aligned_cols=187 Identities=20% Similarity=0.242 Sum_probs=174.3
Q ss_pred CCcEEEEEeCCEEEEEEeeccccc-ccccCccccEEEecCcEEEEEeccHHHHHHHHHHHHHHHHHhhhhcCCCCCHHHH
Q 027555 30 GNAAVGVRGTDTIVLGVEKKSTVK-LQDSRSVRKIVSLDNHIALACAGLKADARVLINRARIECQSHRLTVEDPVTVEYI 108 (222)
Q Consensus 30 G~t~igi~~~dgVvla~d~~~~~~-l~~~~~~~Ki~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~i~~~~l 108 (222)
.+|+|||+++||||||+|+|.+++ ++.+++.+||++|++|++++++|..+|++.+.++++.+++.|+++++++++++.+
T Consensus 1 Mtt~vgi~~~dgVvlaaD~r~~~g~~~~~~~~~Ki~~i~~~i~~~~aG~~aD~~~l~~~~~~~~~~~~~~~~~~~~v~~l 80 (198)
T 1ryp_K 1 MDIILGIRVQDSVILASSKAVTRGISVLKDSDDKTRQLSPHTLMSFAGEAGDTVQFAEYIQANIQLYSIREDYELSPQAV 80 (198)
T ss_dssp CCCEEEEECSSCEEEEEECCEEETTEEEESCCCCEEEEETTEEEEEEESHHHHHHHHHHHHHHHHHHHHHHTSCCCHHHH
T ss_pred CceEEEEEECCEEEEEECCCcccCCEEEecCCCceEEeCCCEEEEeccCHHHHHHHHHHHHHHHHHHHHhcCCCCCHHHH
Confidence 479999999999999999999886 4446789999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhhcccCCCccceeeeEEEEEeCCCCccEEEEECCCCceecccEEEecCChHHHHHHHHhhcCCCCh-HHHH
Q 027555 109 TRYIAGLQQKYTQSGGVRPFGLSTLIVGFDPYTGVPSLYQTDPSGTFSAWKANATGRNSNSMREFLEKNYKETSG-QETI 187 (222)
Q Consensus 109 a~~ls~~~~~~~~~~~~rP~~v~~ivaG~d~~~~gp~ly~iD~~G~~~~~~~~a~G~g~~~~~~~Le~~~~~~ls-~ea~ 187 (222)
|+++++.+|++++. .+||++++||||||+.++||+||.+||+|++.+++++|+|+|+++++++||+.|+++|+ +||+
T Consensus 81 a~~l~~~l~~~~~~--r~p~~v~~lvaG~D~~~~~p~Ly~idp~G~~~~~~~~aiG~g~~~a~~~Le~~~~~~~s~eea~ 158 (198)
T 1ryp_K 81 SSFVRQELAKSIRS--RRPYQVNVLIGGYDKKKNKPELYQIDYLGTKVELPYGAHGYSGFYTFSLLDHHYRPDMTTEEGL 158 (198)
T ss_dssp HHHHHHHHHHHTTS--SSCCCEEEEEEEEETTTTEEEEEEECTTCCEEECSEEECTTHHHHHHHHHHHHCCTTCCHHHHH
T ss_pred HHHHHHHHHHhccc--CCCceEEEEEEEEeCCCCCcEEEEECCCCCEEECCEEEEcccHHHHHHHHHhhcCCCCCHHHHH
Confidence 99999999988742 25999999999999423799999999999999999999999999999999999999999 9999
Q ss_pred HHHHHHHHHHhhcC---CCceEEEEEecCceEEe
Q 027555 188 KLAIRALLEVCSFL---YFRMSLGMVITKYYEHL 218 (222)
Q Consensus 188 ~l~~~~l~~~~~~d---~~~~~v~~v~~~~~~~~ 218 (222)
+++++||..+.+|| ..+++|.+|++++++.+
T Consensus 159 ~l~~~al~~~~~~d~~s~~~i~v~vi~~~g~~~~ 192 (198)
T 1ryp_K 159 DLLKLCVQELEKRMPMDFKGVIVKIVDKDGIRQV 192 (198)
T ss_dssp HHHHHHHHHHHHHCSBCCCCEEEEEEETTEEEEE
T ss_pred HHHHHHHHHHHHhCccCCCceEEEEEcCCCEEEe
Confidence 99999999999998 67999999999998864
No 28
>1j2q_H Proteasome beta subunit; ubiquitin, CP, hydrolase; HET: CIB; 2.83A {Archaeoglobus fulgidus} SCOP: d.153.1.4
Probab=100.00 E-value=5.6e-44 Score=290.20 Aligned_cols=181 Identities=26% Similarity=0.351 Sum_probs=172.3
Q ss_pred CcEEEEEeCCEEEEEEeecccc-cccccCccccEEEecCcEEEEEeccHHHHHHHHHHHHHHHHHhhhhcCCCCCHHHHH
Q 027555 31 NAAVGVRGTDTIVLGVEKKSTV-KLQDSRSVRKIVSLDNHIALACAGLKADARVLINRARIECQSHRLTVEDPVTVEYIT 109 (222)
Q Consensus 31 ~t~igi~~~dgVvla~d~~~~~-~l~~~~~~~Ki~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~i~~~~la 109 (222)
+|+|||+++||||||+|+|.++ +++.+++.+||++|++|++|+++|..+|++.+.++++.+++.|+++++++++++.+|
T Consensus 1 tt~vgi~~~dgVvlaad~r~~~g~~~~~~~~~Ki~~i~~~i~~~~aG~~aD~~~l~~~~~~~~~~~~~~~~~~~~~~~~a 80 (202)
T 1j2q_H 1 TTTVGLVCKDGVVMATEKRATMGNFIASKAAKKIYQIADRMAMTTAGSVGDAQFLARIIKIEANLYEIRRERKPTVRAIA 80 (202)
T ss_dssp CCEEEEEETTEEEEEEECCEEETTEEEESSCCCEEEEETTEEEEEEECHHHHHHHHHHHHHHHHHHHHHHSSCCCHHHHH
T ss_pred CcEEEEEeCCEEEEEECCCcCcCCEEeeccccCEEEcCCCEEEEecccHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHH
Confidence 6899999999999999999998 578888999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhhcccCCCccceeeeEEEEEeCCCCccEEEEECCCCceeccc-EEEecCChHHHHHHHHhhcCCCCh-HHHH
Q 027555 110 RYIAGLQQKYTQSGGVRPFGLSTLIVGFDPYTGVPSLYQTDPSGTFSAWK-ANATGRNSNSMREFLEKNYKETSG-QETI 187 (222)
Q Consensus 110 ~~ls~~~~~~~~~~~~rP~~v~~ivaG~d~~~~gp~ly~iD~~G~~~~~~-~~a~G~g~~~~~~~Le~~~~~~ls-~ea~ 187 (222)
+++++.+|.+ +.|||++++||||||+ +||+||.+||+|++.+++ ++|+|+|+++++++||++|+++|+ +||+
T Consensus 81 ~~l~~~~~~~----r~rp~~~~~lvaG~D~--~gp~Ly~id~~G~~~~~~~~~aiG~g~~~a~~~Le~~~~~~~s~eea~ 154 (202)
T 1j2q_H 81 TLTSNLLNSY----RYFPYLVQLLIGGIDS--EGKSIYSIDPIGGAIEEKDIVATGSGSLTAYGVLEDRFTPEIGVDEAV 154 (202)
T ss_dssp HHHHHHHHHT----TTSCCCEEEEEEEEET--TEEEEEEECTTCCEEEESSEEEESTTHHHHHHHHHHHCCTTCCHHHHH
T ss_pred HHHHHHHHhh----CCCCceEEEEEEEEeC--CCCEEEEECCCCCeeecCCEEEEcCCHHHHHHHHHhhcCCCcCHHHHH
Confidence 9999999874 3789999999999994 789999999999999999 999999999999999999999999 9999
Q ss_pred HHHHHHHHHHhhcC---CCceEEEEEecCceEE
Q 027555 188 KLAIRALLEVCSFL---YFRMSLGMVITKYYEH 217 (222)
Q Consensus 188 ~l~~~~l~~~~~~d---~~~~~v~~v~~~~~~~ 217 (222)
+++++||..+.+|| ..++++.+|++++++.
T Consensus 155 ~la~~al~~~~~~d~~s~~~i~v~vi~~~g~~~ 187 (202)
T 1j2q_H 155 ELAVRAIYSAMKRDSASGDGIDVVKITEDEFYQ 187 (202)
T ss_dssp HHHHHHHHHHHTTCTTSCSCEEEEEECSSCEEE
T ss_pred HHHHHHHHHHHhcCCCCCCcEEEEEEeCCCeEE
Confidence 99999999999998 5789999999988765
No 29
>1ryp_N 20S proteasome; multicatalytic proteinase, protein degradation, antigen processing, hydrolase, protease; 1.90A {Saccharomyces cerevisiae} SCOP: d.153.1.4 PDB: 1fnt_N* 1jd2_M* 1g65_M 1vsy_N 1z7q_N 2f16_M* 2fak_M* 2fny_M* 2gpl_M* 3d29_M* 3dy3_M* 3dy4_M* 3e47_M* 3gpj_M* 3gpt_M* 3gpw_M* 3hye_M* 3l5q_R 3mg0_M* 3mg4_M* ...
Probab=100.00 E-value=7.1e-45 Score=301.74 Aligned_cols=191 Identities=13% Similarity=0.183 Sum_probs=179.3
Q ss_pred HHHhcCCcEEEEEeCCEEEEEEeecccc-cccccCccccEEEecCcEEEEEeccHHHHHHHHHHHHHHHHHhhh-----h
Q 027555 25 EAVRKGNAAVGVRGTDTIVLGVEKKSTV-KLQDSRSVRKIVSLDNHIALACAGLKADARVLINRARIECQSHRL-----T 98 (222)
Q Consensus 25 ~a~~~G~t~igi~~~dgVvla~d~~~~~-~l~~~~~~~Ki~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~-----~ 98 (222)
+++++|+|+|||+++||||||+|+|.+. .++.+++.+||++|+++|+|+++|..+|++.+.++++.+++.|++ +
T Consensus 3 ~av~~Gtt~vgi~~~dgVvlaaD~r~~~g~~~~~~~~~KI~~i~~~i~~~~aG~~aD~~~l~~~~~~~~~~~~~~~~~~~ 82 (233)
T 1ryp_N 3 QPIVTGTSVISMKYDNGVIIAADNLGSYGSLLRFNGVERLIPVGDNTVVGISGDISDMQHIERLLKDLVTENAYDNPLAD 82 (233)
T ss_dssp CCCEEECCEEEEEETTEEEEEEECCEEETTEEEESCCCCEEEETTTEEEEEEEEHHHHHHHHHHHHHHHHHHHTTCTTTT
T ss_pred ccccCCceEEEEEECCEEEEEEcCccccCCeeecCCcCceEEeCCCEEEEccccHHHHHHHHHHHHHHHHHHhhccchhh
Confidence 5788999999999999999999999997 477788999999999999999999999999999999999999999 8
Q ss_pred cCCCCCHHHHHHHHHHHHHhhcccCCCccceeeeEEEEEeCCCCccEEEEECCCCceecccEEEecCChHHHHHHHHhhc
Q 027555 99 VEDPVTVEYITRYIAGLQQKYTQSGGVRPFGLSTLIVGFDPYTGVPSLYQTDPSGTFSAWKANATGRNSNSMREFLEKNY 178 (222)
Q Consensus 99 ~~~~i~~~~la~~ls~~~~~~~~~~~~rP~~v~~ivaG~d~~~~gp~ly~iD~~G~~~~~~~~a~G~g~~~~~~~Le~~~ 178 (222)
++++++++.+|+++++.++. ++.++|||+|++||||||+ ++||+||.+||+|++.+++++|+|+|+++++++||+.|
T Consensus 83 ~~~~~~v~~la~~l~~~ly~--~r~~~~P~~v~~lvaG~D~-~~gp~Ly~id~~G~~~~~~~~aiGsgs~~a~~~Le~~~ 159 (233)
T 1ryp_N 83 AEEALEPSYIFEYLATVMYQ--RRSKMNPLWNAIIVAGVQS-NGDQFLRYVNLLGVTYSSPTLATGFGAHMANPLLRKVV 159 (233)
T ss_dssp TTTSCCHHHHHHHHHHHHHH--HHHTTCCCCEEEEEEEECT-TSCEEEEEEETTCCEECCSEEECTHHHHHHHHHHTTTC
T ss_pred cCCCCCHHHHHHHHHHHHHH--hcCCCCCceEEEEEEEEcC-CCCEEEEEECCCcCeEEcCEEEECcCHHHHHHHHHHhh
Confidence 99999999999999999965 4556899999999999996 56999999999999999999999999999999999999
Q ss_pred CC-----CCh-HHHHHHHHHHHHHHhhcC---CCceEEEEEecC-ceEEe
Q 027555 179 KE-----TSG-QETIKLAIRALLEVCSFL---YFRMSLGMVITK-YYEHL 218 (222)
Q Consensus 179 ~~-----~ls-~ea~~l~~~~l~~~~~~d---~~~~~v~~v~~~-~~~~~ 218 (222)
++ +|+ +||++++++||..+.+|| ..+++|.+|+++ +++.+
T Consensus 160 ~~~~~~~~ms~eea~~la~~al~~~~~rd~~sg~~i~v~vi~~~~g~~~~ 209 (233)
T 1ryp_N 160 DRESDIPKTTVQVAEEAIVNAMRVLYYRDARSSRNFSLAIIDKNTGLTFK 209 (233)
T ss_dssp SSGGGGGGCCHHHHHHHHHHHHHHHHHHBTTCCSEEEEEEEETTTEEEEE
T ss_pred ccccccCCCCHHHHHHHHHHHHHHHHHhcccCCCcEEEEEEECCCCeEEc
Confidence 99 999 999999999999999998 579999999988 77653
No 30
>1iru_H 20S proteasome; cell cycle, immune response, proteolysis, ubiquitin, hydrolase; 2.75A {Bos taurus} SCOP: d.153.1.4 PDB: 3unb_N* 3une_N
Probab=100.00 E-value=4.5e-44 Score=291.39 Aligned_cols=185 Identities=16% Similarity=0.244 Sum_probs=175.5
Q ss_pred CcEEEEEeCCEEEEEEeeccccc-ccccCccccEEEecCcEEEEEeccHHHHHHHHHHHHHHHHHhhhhcCCCCCHHHHH
Q 027555 31 NAAVGVRGTDTIVLGVEKKSTVK-LQDSRSVRKIVSLDNHIALACAGLKADARVLINRARIECQSHRLTVEDPVTVEYIT 109 (222)
Q Consensus 31 ~t~igi~~~dgVvla~d~~~~~~-l~~~~~~~Ki~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~i~~~~la 109 (222)
+|+|||+++||||||+|+|.+++ ++.+++.+||++|++|++|+++|..+|++.+.++++.+++.|+++++++++++.+|
T Consensus 1 tt~vgi~~~dgVvlaaD~r~~~g~~~~~~~~~Ki~~i~~~i~~~~aG~~aD~~~l~~~~~~~~~~~~~~~~~~~~v~~la 80 (205)
T 1iru_H 1 TTIMAVQFDGGVVLGADSRTTTGSYIANRVTDKLTPIHDRIFCCRSGSAADTQAVADAVTYQLGFHSIELNEPPLVHTAA 80 (205)
T ss_dssp CCEEEEEETTEEEEEECCCEEETTEEEESSCCCEEEEETTEEEEEEECHHHHHHHHHHHHHHHHHHHHHHTSCCCHHHHH
T ss_pred CcEEEEEeCCEEEEEEcCCcccCcEEecCCcCceEEcCCCEEEEcCccHHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHH
Confidence 68999999999999999999986 88888999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhhcccCCCccceeeeEEEEEeCCCCccEEEEECCCCceecccEEEecCChHHHHHHHHhhcCCCCh-HHHHH
Q 027555 110 RYIAGLQQKYTQSGGVRPFGLSTLIVGFDPYTGVPSLYQTDPSGTFSAWKANATGRNSNSMREFLEKNYKETSG-QETIK 188 (222)
Q Consensus 110 ~~ls~~~~~~~~~~~~rP~~v~~ivaG~d~~~~gp~ly~iD~~G~~~~~~~~a~G~g~~~~~~~Le~~~~~~ls-~ea~~ 188 (222)
+++++.+|.+++ ||++++||||||+ ++||+||.+||+|++.+++++++|+|+++++++||++|+++|+ +||++
T Consensus 81 ~~l~~~~~~~~~-----p~~~~~lvaG~D~-~~gp~ly~~d~~G~~~~~~~~a~Gsgs~~a~~~Le~~~~~~~s~eea~~ 154 (205)
T 1iru_H 81 SLFKEMCYRYRE-----DLMAGIIIAGWDP-QEGGQVYSVPMGGMMVRQSFAIGGSGSSYIYGYVDATYREGMTKEECLQ 154 (205)
T ss_dssp HHHHHHHHHTTT-----TCCEEEEEEEEET-TTEEEEEEECTTSCCEECSEEEESGGGGGGHHHHHHHCCTTCCHHHHHH
T ss_pred HHHHHHHHhcCc-----CccEEEEEEEEeC-CCCCEEEEECCCCcEEecCEEEECCCHHHHHHHHHHhcCCCCCHHHHHH
Confidence 999999998864 9999999999996 5899999999999999999999999999999999999999999 99999
Q ss_pred HHHHHHHHHhhcC---CCceEEEEEecCceEEeeec
Q 027555 189 LAIRALLEVCSFL---YFRMSLGMVITKYYEHLYYS 221 (222)
Q Consensus 189 l~~~~l~~~~~~d---~~~~~v~~v~~~~~~~~~~~ 221 (222)
++++||..+.+|| ..++++.+|+++++++..++
T Consensus 155 l~~~al~~~~~~d~~s~~~i~v~vi~~~g~~~~~l~ 190 (205)
T 1iru_H 155 FTANALALAMERDGSSGGVIRLAAIAESGVERQVLL 190 (205)
T ss_dssp HHHHHHHHHHHHBTTCCSCEEEEEEETTEEEEEEEC
T ss_pred HHHHHHHHHHHhccccCCcEEEEEEeCCCeEEEEeC
Confidence 9999999999998 67999999999998665543
No 31
>1ryp_M 20S proteasome; multicatalytic proteinase, protein degradation, antigen processing, hydrolase, protease; 1.90A {Saccharomyces cerevisiae} SCOP: d.153.1.4 PDB: 1fnt_M* 1jd2_L* 1g65_L 1vsy_M 1z7q_M 2f16_L* 2fak_L* 2fny_L* 2gpl_L* 3d29_L* 3dy3_L* 3dy4_L* 3e47_L* 3gpj_L* 3gpt_L* 3gpw_L* 3hye_L* 3l5q_Q 3mg0_L* 3mg4_L* ...
Probab=100.00 E-value=7.6e-44 Score=293.57 Aligned_cols=189 Identities=20% Similarity=0.316 Sum_probs=177.4
Q ss_pred HhcCCcEEEEEeCCEEEEEEeeccccc-ccccCccccEEEecCcEEEEEeccHHHHHHHHHHHHHHHHHhhhhcC-CCCC
Q 027555 27 VRKGNAAVGVRGTDTIVLGVEKKSTVK-LQDSRSVRKIVSLDNHIALACAGLKADARVLINRARIECQSHRLTVE-DPVT 104 (222)
Q Consensus 27 ~~~G~t~igi~~~dgVvla~d~~~~~~-l~~~~~~~Ki~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~-~~i~ 104 (222)
+++|+|+|||+++||||||+|+|.+++ ++.+++.+||++|+++|+|+++|..+|++.+.+.++.+++.|+++++ ++++
T Consensus 6 v~~Gtt~vgi~~~dgVvlaaD~r~~~g~~i~~~~~~Ki~~i~~~i~~~~aG~~aD~~~l~~~~~~~~~~~~~~~~~~~~~ 85 (222)
T 1ryp_M 6 GDNGGTILGIAGEDFAVLAGDTRNITDYSINSRYEPKVFDCGDNIVMSANGFAADGDALVKRFKNSVKWYHFDHNDKKLS 85 (222)
T ss_dssp CCCCCEEEEEECSSCEEEEEECCEEETTEEEESCCCCCEEEETTEEEEEEESHHHHHHHHHHHHHHHHHHHHHTTTCCCC
T ss_pred ccCCccEEEEEeCCEEEEEEecccccCCEecCCCcCcEEEeCCCEEEEccccHHHHHHHHHHHHHHHHHHHHHcCCCCCC
Confidence 578999999999999999999999986 45678999999999999999999999999999999999999999999 9999
Q ss_pred HHHHHHHHHHHHHhhcccCCCccceeeeEEEEEeCCCCccEEEEECCCCceecccEEEecCChHHHHHHHHhh-------
Q 027555 105 VEYITRYIAGLQQKYTQSGGVRPFGLSTLIVGFDPYTGVPSLYQTDPSGTFSAWKANATGRNSNSMREFLEKN------- 177 (222)
Q Consensus 105 ~~~la~~ls~~~~~~~~~~~~rP~~v~~ivaG~d~~~~gp~ly~iD~~G~~~~~~~~a~G~g~~~~~~~Le~~------- 177 (222)
++.+|+++++.++. + ++|||++++||||||+ +++|+||.+||.|++.+++++|+|+|+++++++||+.
T Consensus 86 v~~la~~l~~~ly~--~--r~~P~~v~~ivaG~D~-~g~p~Ly~~dp~G~~~~~~~~a~Gsg~~~a~~~Le~~~~~~~~~ 160 (222)
T 1ryp_M 86 INSAARNIQHLLYG--K--RFFPYYVHTIIAGLDE-DGKGAVYSFDPVGSYEREQCRAGGAAASLIMPFLDNQVNFKNQY 160 (222)
T ss_dssp HHHHHHHHHHHHHT--T--TTSCCCEEEEEEEECT-TSCEEEEEECTTSCEEEESEEEEETTHHHHHHHHHHHTSCTTCB
T ss_pred HHHHHHHHHHHHHh--c--CCCCceEEEEEEEEcC-CCCeEEEEECCCcCEEecCEEEEcCcHHHHHHHHhccccccccc
Confidence 99999999999853 3 3689999999999996 6679999999999999999999999999999999998
Q ss_pred ----------cCCCCh-HHHHHHHHHHHHHHhhcC---CCceEEEEEecCceEEeee
Q 027555 178 ----------YKETSG-QETIKLAIRALLEVCSFL---YFRMSLGMVITKYYEHLYY 220 (222)
Q Consensus 178 ----------~~~~ls-~ea~~l~~~~l~~~~~~d---~~~~~v~~v~~~~~~~~~~ 220 (222)
|+++|+ +||++++++||..+.+|| ..+++|.+|++++++...+
T Consensus 161 ~~~~~~~~~~~~~~~s~eeA~~la~~al~~a~~rd~~sg~~i~v~vi~~~g~~~~~~ 217 (222)
T 1ryp_M 161 EPGTNGKVKKPLKYLSVEEVIKLVRDSFTSATERHIQVGDGLEILIVTKDGVRKEFY 217 (222)
T ss_dssp CTTSTTCSBCCCCCCCHHHHHHHHHHHHHHHHHHBTTCCSEEEEEEEETTEEEEEEE
T ss_pred ccccccccccCCCCCCHHHHHHHHHHHHHHHHHhcccCCCcEEEEEEcCCCeEEEEe
Confidence 889999 999999999999999998 5799999999999988765
No 32
>1iru_J 20S proteasome; cell cycle, immune response, proteolysis, ubiquitin, hydrolase; 2.75A {Bos taurus} SCOP: d.153.1.4 PDB: 3unb_I* 3une_I 3unf_I* 3unh_I
Probab=100.00 E-value=8.4e-44 Score=289.78 Aligned_cols=191 Identities=15% Similarity=0.237 Sum_probs=175.3
Q ss_pred HhcCCcEEEEEeCCEEEEEEeeccccccc-ccCccccEEEecCcEEEEEeccHHHHHHHHHHHHHHHHHhhhhcCCCCCH
Q 027555 27 VRKGNAAVGVRGTDTIVLGVEKKSTVKLQ-DSRSVRKIVSLDNHIALACAGLKADARVLINRARIECQSHRLTVEDPVTV 105 (222)
Q Consensus 27 ~~~G~t~igi~~~dgVvla~d~~~~~~l~-~~~~~~Ki~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~i~~ 105 (222)
+.+|+|+|||+++||||||+|+|.++++. .+++.+||++|++|++|+++|..+|++.+.++++.+++.|++++++++++
T Consensus 5 ~~~Gtt~vgi~~~dgVvlaaD~r~~~g~~~~~~~~~Ki~~i~~~i~~~~aG~~aD~~~l~~~~~~~~~~~~~~~~~~~~v 84 (205)
T 1iru_J 5 SYNGGAVMAMKGKNCVAIAADRRFGIQAQLVTTDFQKIFPMGDRLYIGLAGLATDVQTVAQRLKFRLNLYELKEGRQIKP 84 (205)
T ss_dssp TSSCCEEEEEECSSEEEEEEECCEEETTEEEESCCCCEEECSTTEEEECCSCHHHHHHHHHHHHHHHHHHHHHSSSCCCH
T ss_pred cCCCCeEEEEEeCCEEEEEECCccccCCeEeecCCccEEEeCCCEEEEccccHHHHHHHHHHHHHHHHHHHhhcCCCCCH
Confidence 36899999999999999999999998644 45589999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhhcccCCCccceeeeEEEEEeCCCCccEEEEECCCCceecc-cEEEecCChHHHHHHHHhhcCCCCh-
Q 027555 106 EYITRYIAGLQQKYTQSGGVRPFGLSTLIVGFDPYTGVPSLYQTDPSGTFSAW-KANATGRNSNSMREFLEKNYKETSG- 183 (222)
Q Consensus 106 ~~la~~ls~~~~~~~~~~~~rP~~v~~ivaG~d~~~~gp~ly~iD~~G~~~~~-~~~a~G~g~~~~~~~Le~~~~~~ls- 183 (222)
+.+|+++++.+ |+++ ..||++++||||||+++++|+||.+||+|++.++ +++|+|+|+++++++||+.|+++|+
T Consensus 85 ~~la~~l~~~~--y~~r--~~P~~v~~lvaG~D~~~~~p~Ly~idp~G~~~~~~~~~aiG~gs~~a~~~Le~~~~~~~s~ 160 (205)
T 1iru_J 85 YTLMSMVANLL--YEKR--FGPYYTEPVIAGLDPKTFKPFICSLDLIGCPMVTDDFVVSGTCAEQMYGMCESLWEPNMDP 160 (205)
T ss_dssp HHHHHHHHHHH--HTTT--TSCCSCCCEEEEECTTSCCEEEEEECTTCCEEECSSEEEEETTHHHHHHHHHHHCCSSCCH
T ss_pred HHHHHHHHHHH--HHhc--CCCceEEEEEEEEeCCCCCeEEEEECCCCCccccCCeeEeeeCHHHHHHHHhcccCCCCCH
Confidence 99999999999 4554 3599999999999942478999999999999665 7799999999999999999999999
Q ss_pred HHHHHHHHHHHHHHhhcC---CCceEEEEEecCceEEeeec
Q 027555 184 QETIKLAIRALLEVCSFL---YFRMSLGMVITKYYEHLYYS 221 (222)
Q Consensus 184 ~ea~~l~~~~l~~~~~~d---~~~~~v~~v~~~~~~~~~~~ 221 (222)
+||++++++||..+.+|| ..+++|.+|++++++...+.
T Consensus 161 eea~~l~~~al~~~~~~d~~s~~~i~v~vi~~~g~~~~~~~ 201 (205)
T 1iru_J 161 DHLFETISQAMLNAVDRDAVSGMGVIVHIIEKDKITTRTLK 201 (205)
T ss_dssp HHHHHHHHHHHHHHGGGBTTSCSCEEEEEEESSBEEEEEBC
T ss_pred HHHHHHHHHHHHHHHHhCcccCCceEEEEEcCCCEEEEEee
Confidence 999999999999999998 57999999999999887653
No 33
>2jay_A Proteasome; hydrolase; 1.99A {Mycobacterium tuberculosis} PDB: 3mka_C 3mi0_C* 2fhg_H* 2fhh_H 3krd_C* 3mfe_G 3hfa_H* 3h6i_C 3h6f_C 3hf9_H 3mfe_H
Probab=100.00 E-value=2.7e-44 Score=306.77 Aligned_cols=213 Identities=15% Similarity=0.138 Sum_probs=162.1
Q ss_pred CCCCCCCeeeCCCCcc-----ch--hhhHHHHHhcCCcEEEEEeCCEEEEEEeeccccc-ccccCccccEEEecCcEEEE
Q 027555 2 ARYDRAITVFSPDGHL-----FQ--VEYALEAVRKGNAAVGVRGTDTIVLGVEKKSTVK-LQDSRSVRKIVSLDNHIALA 73 (222)
Q Consensus 2 ~~yd~~~~~fsp~G~l-----~q--~eya~~a~~~G~t~igi~~~dgVvla~d~~~~~~-l~~~~~~~Ki~~i~~~i~~~ 73 (222)
++|+..+....||.-- +| +|||++ +++|+|+|||+++||||||+|+|.+++ ++.+++.+||++|+++++|+
T Consensus 23 ~~f~~~~~~~~~~~l~~~~~~~~~~~~ya~~-v~~GtTiVgi~~kdGVVlAaD~r~t~g~li~~~~~~KI~~i~d~i~~~ 101 (291)
T 2jay_A 23 SSFTDFLRRQAPELLPASISGGAPLAGGDAQ-LPHGTTIVALKYPGGVVMAGDRRSTQGNMISGRDVRKVYITDDYTATG 101 (291)
T ss_dssp ------------------------------------CCEEEEEETTEEEEEECCC--------CCCCCCEEEEETTEEEE
T ss_pred ccHHHHhhhcChhhccccccccCcCcccccc-ccCCcEEEEEEECCEEEEEECCCccCCCeeecCCcccEEEeCCcEEEE
Confidence 3566666777776432 22 689999 999999999999999999999999985 77788999999999999999
Q ss_pred EeccHHHHHHHHHHHHHHHHHhhhhcCCCCCHHHHHHHHHHHHHhhcccCCCccceeeeEEEEEeCCCCc-----cEEEE
Q 027555 74 CAGLKADARVLINRARIECQSHRLTVEDPVTVEYITRYIAGLQQKYTQSGGVRPFGLSTLIVGFDPYTGV-----PSLYQ 148 (222)
Q Consensus 74 ~sG~~~D~~~l~~~~~~~~~~~~~~~~~~i~~~~la~~ls~~~~~~~~~~~~rP~~v~~ivaG~d~~~~g-----p~ly~ 148 (222)
++|..+|++.+.++++.+++.|++.++++++++.+|+.+++++|.+++ ..+|||+|++||||||+ +++ |+||.
T Consensus 102 ~aG~~aD~~~l~~~lr~~~~~y~~~~~~~i~v~~la~~la~~l~~~~~-~~~rpf~v~~lvaG~D~-~g~~~~~~p~Ly~ 179 (291)
T 2jay_A 102 IAGTAAVAVEFARLYAVELEHYEKLEGVPLTFAGKINRLAIMVRGNLA-AAMQGLLALPLLAGYDI-HASDPQSAGRIVS 179 (291)
T ss_dssp EESCHHHHHHHHHHHHHHHHHHHHHHSSCCCHHHHHHHHHHHHHTCHH-HHHHTCCCEEEEEEECT-TCSCSTTCEEEEE
T ss_pred EcccHHHHHHHHHHHHHHHHHhhhhcCCCCCHHHHHHHHHHHHHHhhh-hhccccceeEEEEEEeC-CCCcCCCCCEEEE
Confidence 999999999999999999999999999999999999999999998865 45789999999999996 555 99999
Q ss_pred ECCCCcee--cccEEEecCChHHHHHHHHhhcCCCCh-HHHHHHHHHHHHHHhhcCC--Cce--------EEEEEecCce
Q 027555 149 TDPSGTFS--AWKANATGRNSNSMREFLEKNYKETSG-QETIKLAIRALLEVCSFLY--FRM--------SLGMVITKYY 215 (222)
Q Consensus 149 iD~~G~~~--~~~~~a~G~g~~~~~~~Le~~~~~~ls-~ea~~l~~~~l~~~~~~d~--~~~--------~v~~v~~~~~ 215 (222)
+||+|++. +++++|+|+|+++++++||+.|+++|+ +||++++++||+.++++|. .++ +|.+|+++++
T Consensus 180 iDp~G~~~e~~~~~~aiGsgs~~a~~~Le~~~~~~ms~eEAi~la~~aL~~a~~~D~~sg~~e~vr~~~~~v~vi~~dg~ 259 (291)
T 2jay_A 180 FDAAGGWNIEEEGYQAVGSGSLFAKSSMKKLYSQVTDGDSGLRVAVEALYDAADDDSATGGPDLVRGIFPTAVIIDADGA 259 (291)
T ss_dssp ECTTSCEEECSSSEEEESTTHHHHHHHHHHHGGGCCSHHHHHHHHHHHHHHC----------------CCEEEEEETTEE
T ss_pred ECCCCcEEecCCCEEEEecCHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHhhCCCCCCcccccccCCEEEEEECCCe
Confidence 99999999 889999999999999999999999999 9999999999999999982 333 6999999987
Q ss_pred EE
Q 027555 216 EH 217 (222)
Q Consensus 216 ~~ 217 (222)
+.
T Consensus 260 ~~ 261 (291)
T 2jay_A 260 VD 261 (291)
T ss_dssp EE
T ss_pred EE
Confidence 76
No 34
>3nzj_H Proteasome component PUP1; ubiquitin, protein degradation, N-terminal nucleophilic HYDR 19S regulatory particle; HET: TY5 TRO MES; 2.40A {Saccharomyces cerevisiae} PDB: 3nzw_H* 3nzx_H* 4b4t_2
Probab=100.00 E-value=1.1e-43 Score=298.75 Aligned_cols=185 Identities=20% Similarity=0.205 Sum_probs=169.4
Q ss_pred HHHHHhcCCcEEEEEeCCEEEEEEeecccc-cccccCccccEEEecCcEEEEEeccHHHHHHHHHHHHHHHHHhhhhcCC
Q 027555 23 ALEAVRKGNAAVGVRGTDTIVLGVEKKSTV-KLQDSRSVRKIVSLDNHIALACAGLKADARVLINRARIECQSHRLTVED 101 (222)
Q Consensus 23 a~~a~~~G~t~igi~~~dgVvla~d~~~~~-~l~~~~~~~Ki~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~ 101 (222)
.+|++++|+|+|||+++||||||+|+|.++ .++.+++.+||++|++||+|+++|..+|++.+.+.++.+++.|++++++
T Consensus 22 ~~kav~~GtTivgi~~kdGVVlAaD~r~t~g~li~~~~~~KI~~I~d~i~~~~aG~~aD~~~l~~~lr~~~~~~~~~~~~ 101 (261)
T 3nzj_H 22 QPKATSTGTTIVGVKFNNGVVIAADTRSTQGPIVADKNCAKLHRISPKIWCAGAGTAADTEAVTQLIGSNIELHSLYTSR 101 (261)
T ss_dssp --------CCEEEEEETTEEEEEEECCEEETTEEEETTCCCEEEEETTEEEEEEESHHHHHHHHHHHHHHHHHHHHHHTS
T ss_pred CCcccccCceEEEEEECCEEEEEEcCCcccCCeeccCCcceEEEEcCCEEEEeccCHHHHHHHHHHHHHHHHHhHHhhCC
Confidence 478999999999999999999999999998 4677889999999999999999999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHHhhcccCCCccceeeeEEEEEeCCCCccEEEEECCCCceecccEEEecCChHHHHHHHHhhcCCC
Q 027555 102 PVTVEYITRYIAGLQQKYTQSGGVRPFGLSTLIVGFDPYTGVPSLYQTDPSGTFSAWKANATGRNSNSMREFLEKNYKET 181 (222)
Q Consensus 102 ~i~~~~la~~ls~~~~~~~~~~~~rP~~v~~ivaG~d~~~~gp~ly~iD~~G~~~~~~~~a~G~g~~~~~~~Le~~~~~~ 181 (222)
+++++.+|+++++.++++ .+||++++||||||+ +||+||.+||+|++.+++++|+|+|+++++++||+.|+++
T Consensus 102 ~~~v~~~a~~l~~~l~~~-----~~~~gv~llvaG~D~--~Gp~Ly~iDp~G~~~~~~~~aiGsgs~~a~~~Le~~~~~~ 174 (261)
T 3nzj_H 102 EPRVVSALQMLKQHLFKY-----QGHIGAYLIVAGVDP--TGSHLFSIHAHGSTDVGYYLSLGSGSLAAMAVLESHWKQD 174 (261)
T ss_dssp CCCHHHHHHHHHHHHHHT-----TTCSCEEEEEEEEET--TEEEEEEECTTSCEEECSEEEESTTHHHHHHHHHHHCCSS
T ss_pred CCCHHHHHHHHHHHHHHh-----cCcccEEEEEEEEeC--CCCEEEEECCCccEEecCeEEeccchHHHHHHHHHHhccC
Confidence 999999999999998764 369999999999995 6899999999999999999999999999999999999999
Q ss_pred Ch-HHHHHHHHHHHHHHhhcC---CCceEEEEEecCc
Q 027555 182 SG-QETIKLAIRALLEVCSFL---YFRMSLGMVITKY 214 (222)
Q Consensus 182 ls-~ea~~l~~~~l~~~~~~d---~~~~~v~~v~~~~ 214 (222)
|+ +||++++++||..+.+|| ..+++|.+|++++
T Consensus 175 ms~eEA~~la~~al~~a~~rD~~sg~~iev~vI~kdg 211 (261)
T 3nzj_H 175 LTKEEAIKLASDAIQAGIWNDLGSGSNVDVCVMEIGK 211 (261)
T ss_dssp CCHHHHHHHHHHHHHHHHHHCTTCCSCEEEEEEETTS
T ss_pred CCHHHHHHHHHHHHHHHHhhCCCCCCcEEEEEEECCC
Confidence 99 999999999999999998 5799999999998
No 35
>1q5r_H Proteasome beta-type subunit 1; proteasome assembly, Pro-peptide, inter-subunit contacts, hydrolase; 3.10A {Rhodococcus erythropolis} SCOP: d.153.1.4 PDB: 2h6j_H
Probab=100.00 E-value=3.6e-44 Score=306.23 Aligned_cols=193 Identities=18% Similarity=0.164 Sum_probs=180.2
Q ss_pred HHHHHhcCCcEEEEEeCCEEEEEEeecccc-cccccCccccEEEecCcEEEEEeccHHHHHHHHHHHHHHHHHhhhhcCC
Q 027555 23 ALEAVRKGNAAVGVRGTDTIVLGVEKKSTV-KLQDSRSVRKIVSLDNHIALACAGLKADARVLINRARIECQSHRLTVED 101 (222)
Q Consensus 23 a~~a~~~G~t~igi~~~dgVvla~d~~~~~-~l~~~~~~~Ki~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~ 101 (222)
|+||+++|+|+|||+++||||||+|+|.++ +++.+++.+||++|+++|+|+++|..+|++.+.++++.+++.|++++++
T Consensus 58 a~~Av~~GtTiVgIk~kdGVVlAaD~r~t~G~li~~~~~~KI~~I~~~i~~~~aG~~aD~~~l~~~~r~~~~~y~~~~g~ 137 (294)
T 1q5r_H 58 SGDLAPHGTTIVALTYKGGVLLAGDRRATQGNLIASRDVEAVYVTDEYSAAGIAGTAGIAIELVRLFAVELEHYEKIEGV 137 (294)
T ss_dssp --CCSCBCCCEEEEECSSCEEEEECCCEEETTEEEESCCCCEEEEETTEEEEEEEBHHHHHHHHHHHHHHHHHHHHHHSS
T ss_pred HHHHHhcCceEEEEEECCEEEEEEcCccccCceeecCCcceEEEECCcEEEEEeecHHHHHHHHHHHHHHHHHhhHhhCC
Confidence 899999999999999999999999999998 6888889999999999999999999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHHhhcccCCCccceeeeEEEEEeCCCCc-----cEEEEECCCCceecc--cEEEecCChHHHHHHH
Q 027555 102 PVTVEYITRYIAGLQQKYTQSGGVRPFGLSTLIVGFDPYTGV-----PSLYQTDPSGTFSAW--KANATGRNSNSMREFL 174 (222)
Q Consensus 102 ~i~~~~la~~ls~~~~~~~~~~~~rP~~v~~ivaG~d~~~~g-----p~ly~iD~~G~~~~~--~~~a~G~g~~~~~~~L 174 (222)
+++++.+|+.|++++|.+++.. +|||+|++||||||+ +++ |+||.+||+|++.++ +++|+|+|+++++++|
T Consensus 138 ~isv~~la~~la~~l~~~~~~~-~rp~~v~lLvaG~D~-~~g~~~~~p~Ly~iDp~G~~~e~~~~~~AiGsgs~~a~~~L 215 (294)
T 1q5r_H 138 PLTFDGKANRLASMVRGNLGAA-MQGLAVVPLLVGYDL-DADDESRAGRIVSYDVVGGRYEERAGYHAVGSGSLFAKSAL 215 (294)
T ss_dssp CCCHHHHHHHHHHHHHHHHHHH-TTTTCEEEEEEEECT-TCSCTTSCEEEEEECSSSCEEECCSSEEEESTTHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHHhhh-cCCcceEEEEEEEeC-CCCcCCCCCEEEEECCCCeEEecCCCeEEEecCcHHHHHHH
Confidence 9999999999999999988754 799999999999996 546 999999999999998 9999999999999999
Q ss_pred HhhcCCCCh-HHHHHHHHHHHHHHhhcCC-----Cce-----EEEEEecCceEE
Q 027555 175 EKNYKETSG-QETIKLAIRALLEVCSFLY-----FRM-----SLGMVITKYYEH 217 (222)
Q Consensus 175 e~~~~~~ls-~ea~~l~~~~l~~~~~~d~-----~~~-----~v~~v~~~~~~~ 217 (222)
|++|+++|+ +||++++++||+.+.++|. .++ +|.+|++++++.
T Consensus 216 e~~y~~~ms~eEAi~la~~aL~~a~~rD~~sG~~~~ir~i~~ev~vI~~~g~~~ 269 (294)
T 1q5r_H 216 KKIYSPDSDEETALRAAIESLYDAADDDSATGGPDLTRGIYPTAVTITQAGAVH 269 (294)
T ss_dssp HHHCCSSCCHHHHHHHHHHHHHHHHHHCTTTCCCBTTTTBCCEEEEEETTEEEE
T ss_pred HHhccCCCCHHHHHHHHHHHHHHHHhhccccCCchhhcccCCEEEEEECCCEEE
Confidence 999999999 9999999999999999972 235 999999999876
No 36
>1ryp_L 20S proteasome; multicatalytic proteinase, protein degradation, antigen processing, hydrolase, protease; 1.90A {Saccharomyces cerevisiae} SCOP: d.153.1.4 PDB: 1fnt_L 1vsy_L 1z7q_L 3l5q_P 1g65_K* 1g0u_K* 1jd2_K* 2f16_K* 2fak_K* 2fny_K* 2gpl_K* 2zcy_K* 3bdm_K* 3d29_K* 3dy3_K* 3dy4_K* 3e47_K* 3gpj_K* 3gpt_K* 3gpw_K* ...
Probab=100.00 E-value=1.3e-43 Score=290.10 Aligned_cols=182 Identities=19% Similarity=0.287 Sum_probs=174.0
Q ss_pred CcEEEEEeCCEEEEEEeecccc-cccccCccccEEEecCcEEEEEeccHHHHHHHHHHHHHHHHHhhhhcCCCCCHHHHH
Q 027555 31 NAAVGVRGTDTIVLGVEKKSTV-KLQDSRSVRKIVSLDNHIALACAGLKADARVLINRARIECQSHRLTVEDPVTVEYIT 109 (222)
Q Consensus 31 ~t~igi~~~dgVvla~d~~~~~-~l~~~~~~~Ki~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~i~~~~la 109 (222)
+|+|||+++||||||+|+|.++ +++.+++.+||++|++|++|++||..+|++.+.++++.+++.|+++++++++++.+|
T Consensus 1 tt~vgi~~~dgVvlaaD~r~~~g~~~~~~~~~Ki~~i~~~i~~~~aG~~aD~~~l~~~~~~~~~~~~~~~~~~~~v~~la 80 (212)
T 1ryp_L 1 TTTLAFRFQGGIIVAVDSRATAGNWVASQTVKRVIEINPFLLGTMAGGAADCQFWETWLGSQCRLHELREKERISVAAAS 80 (212)
T ss_dssp CCEEEEEETTEEEEEECCCEEETTEEEESCCCCEEEEETTEEEECCBCHHHHHHHHHHHHHHHHHHHHHHSSCCCHHHHH
T ss_pred CcEEEEEeCCEEEEEEcCCcccCCeEecCcccceeeeCCcEEEEccccHHHHHHHHHHHHHHHHHHHHHcCCCCCHHHHH
Confidence 6899999999999999999998 588888999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhhcccCCCccceeeeEEEEEeCCCCccEEEEECCCCceecccEEEecCChHHHHHHHHhhcCCCCh-HHHHH
Q 027555 110 RYIAGLQQKYTQSGGVRPFGLSTLIVGFDPYTGVPSLYQTDPSGTFSAWKANATGRNSNSMREFLEKNYKETSG-QETIK 188 (222)
Q Consensus 110 ~~ls~~~~~~~~~~~~rP~~v~~ivaG~d~~~~gp~ly~iD~~G~~~~~~~~a~G~g~~~~~~~Le~~~~~~ls-~ea~~ 188 (222)
+++++++|.+++ .||++++||||||+ ++||+||.+||+|++.+++++|+|+|+++++++||++|+++|| +||++
T Consensus 81 ~~l~~~~~~~~~----~p~~v~~lvaG~D~-~~gp~Ly~idp~G~~~~~~~~aiGsgs~~a~~~Le~~~~~~~s~eea~~ 155 (212)
T 1ryp_L 81 KILSNLVYQYKG----AGLSMGTMICGYTR-KEGPTIYYVDSDGTRLKGDIFCVGSGQTFAYGVLDSNYKWDLSVEDALY 155 (212)
T ss_dssp HHHHHHHHHTTT----SCCCBEEEEEEEET-TTEEEEEEEETTCCEEECSEEEESTTHHHHHHHHHHHCCTTCCHHHHHH
T ss_pred HHHHHHHHhhCC----CCceEEEEEEEEeC-CCCCEEEEEcCCceeEecCCEEEcCCHHHHHHHHHhhCCCCCCHHHHHH
Confidence 999999999875 39999999999996 5799999999999999999999999999999999999999999 99999
Q ss_pred HHHHHHHHHhhcC---CCceEEEEEecCceEE
Q 027555 189 LAIRALLEVCSFL---YFRMSLGMVITKYYEH 217 (222)
Q Consensus 189 l~~~~l~~~~~~d---~~~~~v~~v~~~~~~~ 217 (222)
++++||..+.+|| ..++++.+|++++++.
T Consensus 156 la~~al~~~~~rd~~s~~~i~v~vi~~~g~~~ 187 (212)
T 1ryp_L 156 LGKRSILAAAHRDAYSGGSVNLYHVTEDGWIY 187 (212)
T ss_dssp HHHHHHHHHHHHBTTCCSEEEEEEEETTEEEE
T ss_pred HHHHHHHHHHHhccccCCceEEEEEcCCceEE
Confidence 9999999999997 6799999999998776
No 37
>1ryp_J 20S proteasome; multicatalytic proteinase, protein degradation, antigen processing, hydrolase, protease; 1.90A {Saccharomyces cerevisiae} SCOP: d.153.1.4 PDB: 1jd2_I* 1g65_I 1vsy_J 2f16_I* 2fak_I* 2fny_I* 2gpl_I* 3d29_I* 3dy3_I* 3dy4_I* 3e47_I* 3gpj_I* 3gpt_I* 3gpw_I* 3hye_I* 3l5q_N 3mg0_I* 3mg4_I* 3oeu_I* 3oev_I* ...
Probab=100.00 E-value=2.5e-43 Score=286.75 Aligned_cols=189 Identities=17% Similarity=0.236 Sum_probs=174.2
Q ss_pred HhcCCcEEEEEeCCEEEEEEeeccccccc-ccCccccEEEecCcEEEEEeccHHHHHHHHHHHHHHHHHhhhhcCCCCCH
Q 027555 27 VRKGNAAVGVRGTDTIVLGVEKKSTVKLQ-DSRSVRKIVSLDNHIALACAGLKADARVLINRARIECQSHRLTVEDPVTV 105 (222)
Q Consensus 27 ~~~G~t~igi~~~dgVvla~d~~~~~~l~-~~~~~~Ki~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~i~~ 105 (222)
+.+|+|+|||+++||||||+|+|.++++. .+++.+||++|+ +++|+++|..+|++.+.+.++.+++.|++++++++++
T Consensus 5 ~~~Gtt~vgi~~~dgVvlaaD~r~~~g~~~~~~~~~Ki~~i~-~i~~~~aG~~aD~~~l~~~~~~~~~~~~~~~~~~~~v 83 (204)
T 1ryp_J 5 SINGGIVVAMTGKDCVAIACDLRLGSQSLGVSNKFEKIFHYG-HVFLGITGLATDVTTLNEMFRYKTNLYKLKEERAIEP 83 (204)
T ss_dssp GSSCCEEEEEECSSEEEEEEECCEEETTEEEESCCCCEEEET-TEEEEEEECHHHHHHHHHHHHHHHHHHHHHHSSCCCH
T ss_pred CCCCCeEEEEEeCCEEEEEEcCCcccCCEEeeCCcceEEEeC-CEEEEeeEcHHHHHHHHHHHHHHHHHHhhccCCCCCH
Confidence 46899999999999999999999998654 455899999999 9999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhhcccCCCccceeeeEEEEEeCCCCccEEEEECCCCceecc-cEEEecCChHHHHHHHHhhcCCCCh-
Q 027555 106 EYITRYIAGLQQKYTQSGGVRPFGLSTLIVGFDPYTGVPSLYQTDPSGTFSAW-KANATGRNSNSMREFLEKNYKETSG- 183 (222)
Q Consensus 106 ~~la~~ls~~~~~~~~~~~~rP~~v~~ivaG~d~~~~gp~ly~iD~~G~~~~~-~~~a~G~g~~~~~~~Le~~~~~~ls- 183 (222)
+.+|+++++.+ |+++. .||++++||||||+.++||+||.+||+|++.++ +++|+|+|+++++++||+.|+++|+
T Consensus 84 ~~la~~l~~~~--y~~~~--~P~~v~~lvaG~D~~~~gp~Ly~idp~G~~~~~~~~~aiG~gs~~a~~~Le~~~~~~~s~ 159 (204)
T 1ryp_J 84 ETFTQLVSSSL--YERRF--GPYFVGPVVAGINSKSGKPFIAGFDLIGCIDEAKDFIVSGTASDQLFGMCESLYEPNLEP 159 (204)
T ss_dssp HHHHHHHHHHH--HTTTT--SCCCEEEEEEEECTTTCCEEEEEECTTCCEECCSSEEEEETTHHHHHHHHHHHCCSSCCH
T ss_pred HHHHHHHHHHH--HHhcC--CCceEEEEEEEEeCCCCceEEEEECCCCCccccCceeEeccCHHHHHHHHhhhcCCCcCH
Confidence 99999999999 55543 499999999999942478999999999999665 7799999999999999999999999
Q ss_pred HHHHHHHHHHHHHHhhcC---CCceEEEEEecCceEEeee
Q 027555 184 QETIKLAIRALLEVCSFL---YFRMSLGMVITKYYEHLYY 220 (222)
Q Consensus 184 ~ea~~l~~~~l~~~~~~d---~~~~~v~~v~~~~~~~~~~ 220 (222)
+||++++++||..+.+|| ..+++|.+|++++++...+
T Consensus 160 eea~~l~~~al~~~~~~d~~s~~~i~v~vi~~~g~~~~~~ 199 (204)
T 1ryp_J 160 EDLFETISQALLNAADRDALSGWGAVVYIIKKDEVVKRYL 199 (204)
T ss_dssp HHHHHHHHHHHHHHHTTBTTSCSCEEEEEEESSCEEEEEE
T ss_pred HHHHHHHHHHHHHHHHhCcccCCcEEEEEEcCCCEEEEEe
Confidence 999999999999999998 6799999999999988765
No 38
>1iru_L 20S proteasome; cell cycle, immune response, proteolysis, ubiquitin, hydrolase; 2.75A {Bos taurus} SCOP: d.153.1.4 PDB: 3unb_K* 3une_K 3unf_K* 3unh_K
Probab=100.00 E-value=3e-43 Score=286.36 Aligned_cols=181 Identities=17% Similarity=0.246 Sum_probs=172.3
Q ss_pred CcEEEEEeCCEEEEEEeecccc-cccccCccccEEEecCcEEEEEeccHHHHHHHHHHHHHHHHHhhhhcCCCCCHHHHH
Q 027555 31 NAAVGVRGTDTIVLGVEKKSTV-KLQDSRSVRKIVSLDNHIALACAGLKADARVLINRARIECQSHRLTVEDPVTVEYIT 109 (222)
Q Consensus 31 ~t~igi~~~dgVvla~d~~~~~-~l~~~~~~~Ki~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~i~~~~la 109 (222)
+|+|||+++||||||+|+|.++ +++.+++.+||++|++||+|+++|..+|++.+.+.++.+++.|+++++++++++.+|
T Consensus 1 tt~vgi~~~dgVvlaaD~r~~~g~~~~~~~~~Ki~~i~~~i~~~~aG~~aD~~~l~~~~~~~~~~~~~~~~~~~~v~~la 80 (204)
T 1iru_L 1 TTTLAFKFRHGVIVAADSRATAGAYIASQTVKKVIEINPYLLGTMAGGAADCSFWERLLARQCRIYELRNKERISVAAAS 80 (204)
T ss_dssp CCEEEEEETTEEEEEECCCEEETTEEEESCCCCEEEEETTEEEECCBCHHHHHHHHHHHHHHHHHHHHHHSSCCCHHHHH
T ss_pred CeEEEEEeCCEEEEEEcCCcccCCEEEcCcccceEEcCCCEEEEccCcHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHH
Confidence 6899999999999999999998 577888999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhhcccCCCccceeeeEEEEEeCCCCccEEEEECCCCceecccEEEecCChHHHHHHHHhhcCCCCh-HHHHH
Q 027555 110 RYIAGLQQKYTQSGGVRPFGLSTLIVGFDPYTGVPSLYQTDPSGTFSAWKANATGRNSNSMREFLEKNYKETSG-QETIK 188 (222)
Q Consensus 110 ~~ls~~~~~~~~~~~~rP~~v~~ivaG~d~~~~gp~ly~iD~~G~~~~~~~~a~G~g~~~~~~~Le~~~~~~ls-~ea~~ 188 (222)
+++++.+|.+++ +|++|++|||||| ++||+||.+||+|++.+++++|+|+|+++++++||++|+++|| +||++
T Consensus 81 ~~l~~~~~~~r~----~~~~v~~lvaG~D--~~gp~Ly~idp~G~~~~~~~~aiG~gs~~a~~~Le~~~~~~~s~eea~~ 154 (204)
T 1iru_L 81 KLLANMVYQYKG----MGLSMGTMICGWD--KRGPGLYYVDSEGNRISGATFSVGSGSVYAYGVMDRGYSYDLEVEQAYD 154 (204)
T ss_dssp HHHHHHHHTTTT----SCCCBEEEEEEEC--SSSEEEEEEESSSCEEECSEEEESTTHHHHHHHHHTTCCTTCCHHHHHH
T ss_pred HHHHHHHHHhCC----CCeeEEEEEEEEe--CCCCEEEEECCCCcEEEeCCEEEEcCHHHHHHHHhccCCCCCCHHHHHH
Confidence 999999998753 5899999999999 4789999999999999999999999999999999999999999 99999
Q ss_pred HHHHHHHHHhhcC---CCceEEEEEecCceEE
Q 027555 189 LAIRALLEVCSFL---YFRMSLGMVITKYYEH 217 (222)
Q Consensus 189 l~~~~l~~~~~~d---~~~~~v~~v~~~~~~~ 217 (222)
++++||..+.+|| ..+++|.+|+++++++
T Consensus 155 l~~~al~~~~~rd~~s~~~i~v~vi~~~g~~~ 186 (204)
T 1iru_L 155 LARRAIYQATYRDAYSGGAVNLYHVREDGWIR 186 (204)
T ss_dssp HHHHHHHHHHHHBTTCCSEEEEEEECSSCEEE
T ss_pred HHHHHHHHHHHhCccCCCceEEEEEeCCceEE
Confidence 9999999999997 5799999999988775
No 39
>1g0u_M Proteasome component PRE4; ubiquitin, degradation, protease, NTN-hydrolase; 2.40A {Saccharomyces cerevisiae} SCOP: d.153.1.4 PDB: 2zcy_M* 3bdm_M* 3mg6_M* 3mg7_M* 3mg8_M* 3nzj_M* 3nzw_M* 3nzx_M*
Probab=100.00 E-value=3.5e-44 Score=303.02 Aligned_cols=197 Identities=12% Similarity=0.173 Sum_probs=181.2
Q ss_pred hhhhHHHHHhcCCcEEEEEeCCEEEEEEeecccc-cccccCccccEEEecCcEEEEEeccHHHHHHHHHHHHHHHHHhhh
Q 027555 19 QVEYALEAVRKGNAAVGVRGTDTIVLGVEKKSTV-KLQDSRSVRKIVSLDNHIALACAGLKADARVLINRARIECQSHRL 97 (222)
Q Consensus 19 q~eya~~a~~~G~t~igi~~~dgVvla~d~~~~~-~l~~~~~~~Ki~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~ 97 (222)
..+.+++++.+|+|+|||+++||||||+|+|.+. .++.+++.+||++|+++|+|+++|..+|++.|.+.++.+++.|++
T Consensus 30 ~~~~~~~av~~GtT~vgi~~~dgVVlAaD~r~t~g~~i~~~~~~KI~~i~d~i~~~~aG~~aD~~~l~~~lr~~~~~~~~ 109 (266)
T 1g0u_M 30 PMVNTQQPIVTGTSVISMKYDNGVIIAADNLGSYGSLLRFNGVERLIPVGDNTVVGISGDISDMQHIERLLKDLVTENAY 109 (266)
T ss_dssp ----CCCCCEEECCEEEEEETTEEEEEEECCEEETTEEEECCCCCEEECTTSEEEEEEEEHHHHHHHHHHHHHHHHHHHT
T ss_pred chhhhccCcccCceEEEEEECCEEEEEEcCCcccCceeecCCcCcEEEcCCCEEEEeccCHHHHHHHHHHHHHHHHHhhh
Confidence 3566788899999999999999999999999997 477788999999999999999999999999999999999999998
Q ss_pred -----hcCCCCCHHHHHHHHHHHHHhhcccCCCccceeeeEEEEEeCCCCccEEEEECCCCceecccEEEecCChHHHHH
Q 027555 98 -----TVEDPVTVEYITRYIAGLQQKYTQSGGVRPFGLSTLIVGFDPYTGVPSLYQTDPSGTFSAWKANATGRNSNSMRE 172 (222)
Q Consensus 98 -----~~~~~i~~~~la~~ls~~~~~~~~~~~~rP~~v~~ivaG~d~~~~gp~ly~iD~~G~~~~~~~~a~G~g~~~~~~ 172 (222)
+++++++++.+|++++++++. ++.++|||+|++||||||+ ++||+||.+||+|++.+++++|+|+|++++++
T Consensus 110 ~~~~~~~~~~~~v~~la~~l~~~ly~--~r~~~~P~~v~~lvaG~D~-~~gp~Ly~idp~G~~~~~~~~aiGsgs~~a~~ 186 (266)
T 1g0u_M 110 DNPLADAEEALEPSYIFEYLATVMYQ--RRSKMNPLWNAIIVAGVQS-NGDQFLRYVNLLGVTYSSPTLATGFGAHMANP 186 (266)
T ss_dssp TCTTTTTTTSCCHHHHHHHHHHHHHH--HHHTTCCCCEEEEEEEECT-TSCEEEEEEETTCCEECCSEEECTHHHHTHHH
T ss_pred ccchhhcCCCCCHHHHHHHHHHHHHH--hccCCCCceEEEEEEEEcC-CCCEEEEEECCCCCEEeCCEEEEccCHHHHHH
Confidence 899999999999999999965 4556899999999999996 56999999999999999999999999999999
Q ss_pred HHHhhcCC-----CCh-HHHHHHHHHHHHHHhhcC---CCceEEEEEecC-ceEEe
Q 027555 173 FLEKNYKE-----TSG-QETIKLAIRALLEVCSFL---YFRMSLGMVITK-YYEHL 218 (222)
Q Consensus 173 ~Le~~~~~-----~ls-~ea~~l~~~~l~~~~~~d---~~~~~v~~v~~~-~~~~~ 218 (222)
+||+.|++ +|+ +||++++++||..+.+|| ..+++|.+|+++ +++.+
T Consensus 187 ~Le~~~~~~~~~~~ms~eeA~~la~~al~~a~~rd~~sg~~i~v~vI~k~~g~~~~ 242 (266)
T 1g0u_M 187 LLRKVVDRESDIPKTTVQVAEEAIVNAMRVLYYRDARSSRNFSLAIIDKNTGLTFK 242 (266)
T ss_dssp HHTTTCSSGGGGGGCCHHHHHHHHHHHHHHHHHHBTTCCSEEEEEEEETTTEEEEE
T ss_pred HHHHhhcccccCCCCCHHHHHHHHHHHHHHHHHhcCCCCCcEEEEEEECCCCeEEc
Confidence 99999999 999 999999999999999998 579999999988 87653
No 40
>1iru_K 20S proteasome; cell cycle, immune response, proteolysis, ubiquitin, hydrolase; 2.75A {Bos taurus} SCOP: d.153.1.4 PDB: 3unb_J* 3une_J 3unf_J* 3unh_J
Probab=100.00 E-value=4.7e-43 Score=284.54 Aligned_cols=186 Identities=16% Similarity=0.238 Sum_probs=172.6
Q ss_pred CCcEEEEEeCCEEEEEEeecccc-cccccCccccEEEecCcEEEEEeccHHHHHHHHHHHHHHHHHhhhhcCCCCCHHHH
Q 027555 30 GNAAVGVRGTDTIVLGVEKKSTV-KLQDSRSVRKIVSLDNHIALACAGLKADARVLINRARIECQSHRLTVEDPVTVEYI 108 (222)
Q Consensus 30 G~t~igi~~~dgVvla~d~~~~~-~l~~~~~~~Ki~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~i~~~~l 108 (222)
.+|+|||+++||||||+|+|.++ +++.+++.+||++|++||+++++|..+|++.+.++++.+++.|+++++++++++.+
T Consensus 1 Mtt~vgi~~~dgVvlaaD~r~~~g~~~~~~~~~Ki~~i~~~i~~~~aG~~aD~~~l~~~~~~~~~~~~~~~~~~~~v~~~ 80 (201)
T 1iru_K 1 MEYLIGIQGPDYVLVASDRVAASNIVQMKDDHDKMFKMSEKILLLCVGEAGDTVQFAEYIQKNVQLYKMRNGYELSPTAA 80 (201)
T ss_dssp CCCEEEEECSSEEEEEEECCEEETTEEEESSCCCEEECSSSEEEEEEESTTHHHHHHHHHHHHHHHHHHHHSSCCCHHHH
T ss_pred CceEEEEEeCCEEEEEEcCccccCcEEEccCcceEEEecCCEEEEeCcCHHHHHHHHHHHHHHHHHHHHHcCCCCCHHHH
Confidence 47999999999999999999998 58888899999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhhcccCCCccceeeeEEEEEeCCCCccEEEEECCCCceecccEEEecCChHHHHHHHHhhcCCCCh-HHHH
Q 027555 109 TRYIAGLQQKYTQSGGVRPFGLSTLIVGFDPYTGVPSLYQTDPSGTFSAWKANATGRNSNSMREFLEKNYKETSG-QETI 187 (222)
Q Consensus 109 a~~ls~~~~~~~~~~~~rP~~v~~ivaG~d~~~~gp~ly~iD~~G~~~~~~~~a~G~g~~~~~~~Le~~~~~~ls-~ea~ 187 (222)
|+++++.+.... + ..|||++++||||||+ ++||+||.+||+|++.+++++|+|+|+++++++||+.|+++|+ +||+
T Consensus 81 a~~~~~~l~~~~-~-~~~p~~~~~lvaG~D~-~~gp~Ly~id~~G~~~~~~~~aiGsgs~~a~~~Le~~~~~~~s~eea~ 157 (201)
T 1iru_K 81 ANFTRRNLADCL-R-SRTPYHVNLLLAGYDE-HEGPALYYMDYLAALAKAPFAAHGYGAFLTLSILDRYYTPTISRERAV 157 (201)
T ss_dssp HHHHHHHHHHHH-T-SSSCCCEEEEEEEEET-TTEEEEEEECTTCCEEECSEEEESHHHHHHHHHHHHHCCTTCCHHHHH
T ss_pred HHHHHHHHHHHH-h-cCCCccEEEEEEEEeC-CCCeEEEEECCCcCeEECCEEEECCcHHHHHHHHHhcccCCCCHHHHH
Confidence 999987663222 2 2379999999999996 5799999999999999999999999999999999999999999 9999
Q ss_pred HHHHHHHHHHhhcC---CCceEEEEEecCceEEe
Q 027555 188 KLAIRALLEVCSFL---YFRMSLGMVITKYYEHL 218 (222)
Q Consensus 188 ~l~~~~l~~~~~~d---~~~~~v~~v~~~~~~~~ 218 (222)
+++++||+.+.+|| ..++++.+|++++++++
T Consensus 158 ~l~~~al~~a~~rd~~sg~~i~v~vi~~~g~~~~ 191 (201)
T 1iru_K 158 ELLRKCLEELQKRFILNLPTFSVRIIDKNGIHDL 191 (201)
T ss_dssp HHHHHHHHHHHHTBCBCCCCEEEEEEETTEEECC
T ss_pred HHHHHHHHHHHhhccccCCceEEEEEcCCCeEEe
Confidence 99999999999998 57999999999999875
No 41
>3unf_H Proteasome subunit beta type-10; antigen presentation, drug development, protein degradation, hydrolase-hydrolase inhibitor complex; HET: 04C; 2.90A {Mus musculus} PDB: 3unh_H
Probab=100.00 E-value=7e-43 Score=289.79 Aligned_cols=181 Identities=20% Similarity=0.253 Sum_probs=171.4
Q ss_pred CcEEEEEeCCEEEEEEeeccccc-ccccCccccEEEecCcEEEEEeccHHHHHHHHHHHHHHHHHhhhhcCCCCCHHHHH
Q 027555 31 NAAVGVRGTDTIVLGVEKKSTVK-LQDSRSVRKIVSLDNHIALACAGLKADARVLINRARIECQSHRLTVEDPVTVEYIT 109 (222)
Q Consensus 31 ~t~igi~~~dgVvla~d~~~~~~-l~~~~~~~Ki~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~i~~~~la 109 (222)
+|+|||+++||||||+|+|.+++ ++.+++.+||++|++||+|+++|..+|++.+.+.++.++++|+++++++++++.+|
T Consensus 1 TT~vgi~~kdgVVlaaD~r~t~g~~v~~~~~~KI~~i~~~i~~~~aG~~aD~~~l~~~~~~~~~~~~~~~~~~~~v~~la 80 (234)
T 3unf_H 1 TTIAGLVFRDGVILGADTRATNDSVVADKSCEKIHFIAPKIYCCGAGVAADTEMTTRMAASKMELHALSTGREPRVATVT 80 (234)
T ss_dssp CEEEEEECSSEEEEEECCCEEETTEEEESSCCCEEEEETTEEEEEEESHHHHHHHHHHHHHHHHHHHHHHCSCCCHHHHH
T ss_pred CeEEEEEeCCEEEEEECCCcccCCEeccCccccEEEecCCEEEEecccHHHHHHHHHHHHHHHHhhHHhcCCCCCHHHHH
Confidence 68999999999999999999986 45577899999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhhcccCCCccceeeeEEEEEeCCCCccEEEEECCCCceecccEEEecCChHHHHHHHHhhcCCCCh-HHHHH
Q 027555 110 RYIAGLQQKYTQSGGVRPFGLSTLIVGFDPYTGVPSLYQTDPSGTFSAWKANATGRNSNSMREFLEKNYKETSG-QETIK 188 (222)
Q Consensus 110 ~~ls~~~~~~~~~~~~rP~~v~~ivaG~d~~~~gp~ly~iD~~G~~~~~~~~a~G~g~~~~~~~Le~~~~~~ls-~ea~~ 188 (222)
+++++.+++| .+||++++||||||+ +||+||.+||+|++.+++++|+|+|+++++++||+.|+++|+ +||++
T Consensus 81 ~~l~~~l~~~-----~~p~~v~llvaG~D~--~gp~Ly~idp~G~~~~~~~~aiGsgs~~a~~~Le~~~~~~ms~eeA~~ 153 (234)
T 3unf_H 81 RILRQTLFRY-----QGHVGASLVVGGVDL--NGPQLYEVHPHGSYSRLPFTALGSGQGAAVALLEDRFQPNMTLEAAQE 153 (234)
T ss_dssp HHHHHHHHHT-----TTCSCEEEEEEEEET--TEEEEEEECTTSCEEECSEEEEETTHHHHHHHHHHHCCSSCCHHHHHH
T ss_pred HHHHHHHHhc-----CCCccEEEEEEEEeC--CCCEEEEECCCCCEEeccEEEEcCCchhhHHHHHhccCCCCCHHHHHH
Confidence 9999999865 369999999999995 689999999999999999999999999999999999999999 99999
Q ss_pred HHHHHHHHHhhcC---CCceEEEEEecCceEEe
Q 027555 189 LAIRALLEVCSFL---YFRMSLGMVITKYYEHL 218 (222)
Q Consensus 189 l~~~~l~~~~~~d---~~~~~v~~v~~~~~~~~ 218 (222)
++++||..+.+|| ..+++|.+|++++++.+
T Consensus 154 la~~al~~~~~~D~~sg~~iev~vi~~dg~~~l 186 (234)
T 3unf_H 154 LLVEAITAGILSDLGSGGNVDACVITAGGAKLQ 186 (234)
T ss_dssp HHHHHHHHHHHHBTTCCSCEEEEEEESSCEEEE
T ss_pred HHHHHHHHHHhhcCCCCCcEEEEEEECCCEEEe
Confidence 9999999999998 68999999999998753
No 42
>1q5q_H Proteasome beta-type subunit 1; proteasome assembly, Pro-peptide, inter-subunit contacts, RH erythropolis, hydrolase; 2.60A {Rhodococcus erythropolis} SCOP: d.153.1.4
Probab=100.00 E-value=7e-43 Score=290.13 Aligned_cols=185 Identities=19% Similarity=0.170 Sum_probs=173.5
Q ss_pred CcEEEEEeCCEEEEEEeecccc-cccccCccccEEEecCcEEEEEeccHHHHHHHHHHHHHHHHHhhhhcCCCCCHHHHH
Q 027555 31 NAAVGVRGTDTIVLGVEKKSTV-KLQDSRSVRKIVSLDNHIALACAGLKADARVLINRARIECQSHRLTVEDPVTVEYIT 109 (222)
Q Consensus 31 ~t~igi~~~dgVvla~d~~~~~-~l~~~~~~~Ki~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~i~~~~la 109 (222)
+|+|||+++||||||+|+|.++ +++.+++.+||++|+++++|+++|..+|++.+.++++.+++.|+++++++++++.+|
T Consensus 1 tT~vgi~~~dgVVlaaD~r~~~g~l~~~~~~~KI~~i~~~i~~~~aG~~aD~~~l~~~~~~~~~~~~~~~~~~~~v~~la 80 (235)
T 1q5q_H 1 TTIVALTYKGGVLLAGDRRATQGNLIASRDVEKVYVTDEYSAAGIAGTAGIAIELVRLFAVELEHYEKIEGVPLTFDGKA 80 (235)
T ss_dssp CCEEEEECSSCEEEEECCCEEETTEEEESCCCCEEEEETTEEEEEEECHHHHHHHHHHHHHHHHHHHHHHSSCCCHHHHH
T ss_pred CeEEEEEECCEEEEEECCCCCcCCEEecCCcCcEEEeCCcEEEEcCCcHHHHHHHHHHHHHHHHHhHHHhCCCCCHHHHH
Confidence 6899999999999999999998 688888999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhhcccCCCccceeeeEEEEEeCCCCc-----cEEEEECCCCceecc--cEEEecCChHHHHHHHHhhcCCCC
Q 027555 110 RYIAGLQQKYTQSGGVRPFGLSTLIVGFDPYTGV-----PSLYQTDPSGTFSAW--KANATGRNSNSMREFLEKNYKETS 182 (222)
Q Consensus 110 ~~ls~~~~~~~~~~~~rP~~v~~ivaG~d~~~~g-----p~ly~iD~~G~~~~~--~~~a~G~g~~~~~~~Le~~~~~~l 182 (222)
+.|++++|.++++. +|||+|++||||||+ +++ |+||.+||+|++.++ +++|+|+|+++++++||+.|+++|
T Consensus 81 ~~l~~~~~~~~~~~-~rp~~v~~lvaG~D~-~~g~~~~~p~Ly~idp~G~~~~~~~~~~aiGsgs~~a~~~Le~~~~~~m 158 (235)
T 1q5q_H 81 NRLASMVRGNLGAA-MQGLAVVPLLVGYDL-DADDESRAGRIVSYDVVGGRYEERAGYHAVGSGSLFAKSALKKIYSPDS 158 (235)
T ss_dssp HHHHHHHHTTHHHH-TTTCCEEEEEEEECT-TCSSTTSCEEEEEECTTSCEEECCSSEEEESTTHHHHHHHHHHHCCTTC
T ss_pred HHHHHHHHHHHHhh-hcccceEEEEEEEEC-CCCccCCCCEEEEECCCCceEEeCCCeEEECCCHHHHHHHHHhhcCCCC
Confidence 99999999988764 799999999999996 546 999999999999999 999999999999999999999999
Q ss_pred h-HHHHHHHHHHHHHHhhcCC----C-ce-----EEEEEecCceEE
Q 027555 183 G-QETIKLAIRALLEVCSFLY----F-RM-----SLGMVITKYYEH 217 (222)
Q Consensus 183 s-~ea~~l~~~~l~~~~~~d~----~-~~-----~v~~v~~~~~~~ 217 (222)
+ +||++++++||..++++|. . ++ +|.+|++++++.
T Consensus 159 s~eeA~~la~~al~~a~~~d~~sg~~~~i~~~~~ev~vi~~~g~~~ 204 (235)
T 1q5q_H 159 DEETALRAAIESLYDAADDDSATGGPDLTRGIYPTAVTITQAGAVH 204 (235)
T ss_dssp CHHHHHHHHHHHHHHHHHHCTTTCCCBTTTTBCCEEEEEETTEEEE
T ss_pred CHHHHHHHHHHHHHHHHhhCcccCCcccccccccEEEEEeCCCeEE
Confidence 9 9999999999999999982 1 22 999999998876
No 43
>1ryp_I 20S proteasome; multicatalytic proteinase, protein degradation, antigen processing, hydrolase, protease; 1.90A {Saccharomyces cerevisiae} SCOP: d.153.1.4 PDB: 1g0u_H* 1jd2_H* 1g65_H 1vsy_I 1z7q_I 2f16_H* 2fak_H* 2fny_H* 2gpl_H* 3d29_H* 3dy3_H* 3dy4_H* 3e47_H* 3gpj_H* 3gpt_H* 3gpw_H* 3hye_H* 3l5q_M 3mg0_H* 3mg4_H* ...
Probab=100.00 E-value=3.2e-42 Score=283.84 Aligned_cols=180 Identities=20% Similarity=0.194 Sum_probs=170.3
Q ss_pred CcEEEEEeCCEEEEEEeeccccc-ccccCccccEEEecCcEEEEEeccHHHHHHHHHHHHHHHHHhhhhcCCCCCHHHHH
Q 027555 31 NAAVGVRGTDTIVLGVEKKSTVK-LQDSRSVRKIVSLDNHIALACAGLKADARVLINRARIECQSHRLTVEDPVTVEYIT 109 (222)
Q Consensus 31 ~t~igi~~~dgVvla~d~~~~~~-l~~~~~~~Ki~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~i~~~~la 109 (222)
+|+|||+++||||||+|+|.+++ ++.+++.+||++|++||+|+++|..+|++.+.++++.+++.|+++++++++++.++
T Consensus 1 TT~vgi~~~dgVvlaaD~r~t~g~~~~~~~~~KI~~i~d~i~~~~aG~~aD~~~l~~~~~~~~~~~~~~~~~~~~v~~~a 80 (222)
T 1ryp_I 1 TTIVGVKFNNGVVIAADTRSTQGPIVADKNCAKLHRISPKIWCAGAGTAADTEAVTQLIGSNIELHSLYTSREPRVVSAL 80 (222)
T ss_dssp CCEEEEEETTEEEEEECCCEEETTEEEESSCCCEEEEETTEEEEEEECHHHHHHHHHHHHHHHHHHHHHHTSCCCHHHHH
T ss_pred CeEEEEEECCEEEEEEcCCcccCCeeecCCcccEEEecCCEEEEecccHHHHHHHHHHHHHHHHHHHHHcCCCCCHHHHH
Confidence 68999999999999999999986 46677899999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhhcccCCCccceeeeEEEEEeCCCCccEEEEECCCCceecccEEEecCChHHHHHHHHhhcCCCCh-HHHHH
Q 027555 110 RYIAGLQQKYTQSGGVRPFGLSTLIVGFDPYTGVPSLYQTDPSGTFSAWKANATGRNSNSMREFLEKNYKETSG-QETIK 188 (222)
Q Consensus 110 ~~ls~~~~~~~~~~~~rP~~v~~ivaG~d~~~~gp~ly~iD~~G~~~~~~~~a~G~g~~~~~~~Le~~~~~~ls-~ea~~ 188 (222)
+++++.++++ .|||++++||||||+ +||+||.+||+|++.+++++|+|+|+++++++||+.|+++|+ +||++
T Consensus 81 ~~l~~~l~~~-----~~p~~v~~lvaG~D~--~gp~Ly~idp~G~~~~~~~~aiGsgs~~a~~~Le~~~~~~ms~eeA~~ 153 (222)
T 1ryp_I 81 QMLKQHLFKY-----QGHIGAYLIVAGVDP--TGSHLFSIHAHGSTDVGYYLSLGSGSLAAMAVLESHWKQDLTKEEAIK 153 (222)
T ss_dssp HHHHHHHHHT-----TTCSCEEEEEEEEET--TEEEEEEECTTSCEEECSEEEESTTHHHHHHHHHHHCCSSCCHHHHHH
T ss_pred HHHHHHHhhc-----CCCCCeeEEEEEEeC--CCCEEEEECCCCCEEecCEEEECCCHHHHHHHHHhhCCCCcCHHHHHH
Confidence 9999999865 379999999999994 789999999999999999999999999999999999999999 99999
Q ss_pred HHHHHHHHHhhcC---CCceEEEEEecCc-eEE
Q 027555 189 LAIRALLEVCSFL---YFRMSLGMVITKY-YEH 217 (222)
Q Consensus 189 l~~~~l~~~~~~d---~~~~~v~~v~~~~-~~~ 217 (222)
++++||..+++|| ..+++|.+|+.++ ++.
T Consensus 154 la~~al~~~~~~d~~sg~~i~v~vi~~~g~~~~ 186 (222)
T 1ryp_I 154 LASDAIQAGIWNDLGSGSNVDVCVMEIGKDAEY 186 (222)
T ss_dssp HHHHHHHHHHHHCTTCCSCEEEEEEETTSCEEE
T ss_pred HHHHHHHHHHhccccCCCcEEEEEEECCCCEEE
Confidence 9999999999998 5699999999999 764
No 44
>1iru_I 20S proteasome; cell cycle, immune response, proteolysis, ubiquitin, hydrolase; 2.75A {Bos taurus} SCOP: d.153.1.4 PDB: 3unb_H* 3une_H
Probab=100.00 E-value=2.6e-41 Score=280.53 Aligned_cols=179 Identities=20% Similarity=0.225 Sum_probs=169.4
Q ss_pred CcEEEEEeCCEEEEEEeecccccc-cccCccccEEEecCcEEEEEeccHHHHHHHHHHHHHHHHHhhhhcCCCCCHHHHH
Q 027555 31 NAAVGVRGTDTIVLGVEKKSTVKL-QDSRSVRKIVSLDNHIALACAGLKADARVLINRARIECQSHRLTVEDPVTVEYIT 109 (222)
Q Consensus 31 ~t~igi~~~dgVvla~d~~~~~~l-~~~~~~~Ki~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~i~~~~la 109 (222)
+|+|||+++||||||+|+|.++++ +.+++.+||++|+++|+|+++|..+|++.+.++++.+++.|+++++++++++.++
T Consensus 1 TTivgi~~~dgVVlaaD~r~t~g~~~~~~~~~KI~~i~~~i~~~~aG~~aD~~~l~~~~~~~~~~~~~~~~~~~~v~~la 80 (234)
T 1iru_I 1 TTIAGVVYKDGIVLGADTRATEGMVVADKNCSKIHFISPNIYCCGAGTAADTDMTTQLISSNLELHSLSTGRLPRVVTAN 80 (234)
T ss_dssp CCEEEEEETTEEEEEECCCEESSSBEEESSCCCEEEEETTEEEEEEESHHHHHHHHHHHHHHHHHHHHHHCSCCCHHHHH
T ss_pred CeEEEEEeCCEEEEEEcCCcccCceeccCcccceEEecCCEEEEecCcHHHHHHHHHHHHHHHHHHHHhcCCCCCHHHHH
Confidence 689999999999999999999864 4567889999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhhcccCCCccceeeeEEEEEeCCCCccEEEEECCCCceecccEEEecCChHHHHHHHHhhcCCCCh-HHHHH
Q 027555 110 RYIAGLQQKYTQSGGVRPFGLSTLIVGFDPYTGVPSLYQTDPSGTFSAWKANATGRNSNSMREFLEKNYKETSG-QETIK 188 (222)
Q Consensus 110 ~~ls~~~~~~~~~~~~rP~~v~~ivaG~d~~~~gp~ly~iD~~G~~~~~~~~a~G~g~~~~~~~Le~~~~~~ls-~ea~~ 188 (222)
+++++.++.+. +||++++||||||+ +||+||.+||+|++.+++++|+|+|++.++++||+.|+++|+ +||++
T Consensus 81 ~~l~~~l~~~~-----~~~~v~llvaG~D~--~gp~Ly~idp~G~~~~~~~~aiGsgs~~a~~~Le~~~~~~ms~eeA~~ 153 (234)
T 1iru_I 81 RMLKQMLFRYR-----GYIGAALVLGGVDV--TGPHLYSIYPHGSTDKLPYVTMGSGSLAAMAVFEDKFRPDMEEEEAKN 153 (234)
T ss_dssp HHHHHHHHHTT-----TCSCEEEEEEEECS--SCEEEEEECTTSCEEECSEEEESTTHHHHHHHHHHSCCTTCCHHHHHT
T ss_pred HHHHHHHHhcC-----CCCceeEEEEEEcC--CCCEEEEECCCCCEEecCEEEECCchHHHHHHHHHhccCCCCHHHHHH
Confidence 99999998753 59999999999994 789999999999999999999999999999999999999999 99999
Q ss_pred HHHHHHHHHhhcC---CCceEEEEEecCceE
Q 027555 189 LAIRALLEVCSFL---YFRMSLGMVITKYYE 216 (222)
Q Consensus 189 l~~~~l~~~~~~d---~~~~~v~~v~~~~~~ 216 (222)
++++||..+.++| ..+++|.+|++++++
T Consensus 154 la~~al~~a~~~d~~sg~~i~v~vi~k~g~~ 184 (234)
T 1iru_I 154 LVSEAIAAGIFNDLGSGSNIDLCVISKNKLD 184 (234)
T ss_dssp HHHHHHHHHHHHCTTCCSCEEEEEEETTEEE
T ss_pred HHHHHHHHHHHhcccCCCCEEEEEEECCcEE
Confidence 9999999999998 579999999999887
No 45
>3unf_N Proteasome subunit beta type-9; antigen presentation, drug development, protein degradation, hydrolase-hydrolase inhibitor complex; HET: 04C; 2.90A {Mus musculus} PDB: 3unh_N
Probab=100.00 E-value=1.1e-41 Score=276.03 Aligned_cols=183 Identities=17% Similarity=0.206 Sum_probs=169.8
Q ss_pred CcEEEEEeCCEEEEEEeeccccc-ccccCccccEEEecCcEEEEEeccHHHHHHHHHHHHHHHHHhhhhcCCCCCHHHHH
Q 027555 31 NAAVGVRGTDTIVLGVEKKSTVK-LQDSRSVRKIVSLDNHIALACAGLKADARVLINRARIECQSHRLTVEDPVTVEYIT 109 (222)
Q Consensus 31 ~t~igi~~~dgVvla~d~~~~~~-l~~~~~~~Ki~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~i~~~~la 109 (222)
+|+|||+++||||||+|+|.+++ ++.+++.+||++|++|++|+++|..+|++.+.++++.+++.|+++++++++++.+|
T Consensus 1 TT~vgi~~~dgVvlaaD~r~~~g~~~~~~~~~Ki~~i~~~i~~~~aG~~aD~~~l~~~~~~~~~~~~~~~~~~~~v~~~a 80 (199)
T 3unf_N 1 TTIMAVEFDGGVVVGSDSRVSAGTAVVNRVFDKLSPLHQRIFCALSGSAADAQAIADMAAYQLELHGLELEEPPLVLAAA 80 (199)
T ss_dssp CEEEEEECSSCEEEEECCCEEETTEEEESSCCCEEEEETTEEEEECSCHHHHHHHHHHHHHHHHHHHHHTTSCCCHHHHH
T ss_pred CeEEEEEeCCeEEEEECCcccCCceeEccccCceEEcCCCEEEEecccHHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHH
Confidence 68999999999999999999986 77888999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhhcccCCCccceeeeEEEEEeCCCCccEEEEECCCCceecc-cEEEecCChHHHHHHHHhhcCCCCh-HHHH
Q 027555 110 RYIAGLQQKYTQSGGVRPFGLSTLIVGFDPYTGVPSLYQTDPSGTFSAW-KANATGRNSNSMREFLEKNYKETSG-QETI 187 (222)
Q Consensus 110 ~~ls~~~~~~~~~~~~rP~~v~~ivaG~d~~~~gp~ly~iD~~G~~~~~-~~~a~G~g~~~~~~~Le~~~~~~ls-~ea~ 187 (222)
+++++.+|++ .|||++++||||||+ +++|+||. |+|++..+ +++++|+|+++++++||+.|+++|+ +||+
T Consensus 81 ~~l~~~l~~~-----~~p~~v~~lvaG~D~-~~~p~ly~--p~G~~~~~~~~~~~Gsgs~~a~~~Le~~~~~~ms~eea~ 152 (199)
T 3unf_N 81 NVVKNISYKY-----REDLLAHLIVAGWDQ-REGGQVYG--TMGGMLIRQPFTIGGSGSSYIYGYVDAAYKPGMTPEECR 152 (199)
T ss_dssp HHHHHHHHHT-----TTTCCCCEEEEEEET-TTEEEEEE--CGGGCCEECSEEEEEGGGGGGHHHHHHHCCSSCCHHHHH
T ss_pred HHHHHHHHhc-----CCCceEEEEEEEEeC-CCCcEEEE--ECCCceecCCEEEEccCHHHHHHHHHhhcCCCCCHHHHH
Confidence 9999999865 369999999999996 68999999 99997665 6666799999999999999999999 9999
Q ss_pred HHHHHHHHHHhhcC---CCceEEEEEecCceEEeeec
Q 027555 188 KLAIRALLEVCSFL---YFRMSLGMVITKYYEHLYYS 221 (222)
Q Consensus 188 ~l~~~~l~~~~~~d---~~~~~v~~v~~~~~~~~~~~ 221 (222)
+++++||..+.+|| ..+++|.+|+++++++..++
T Consensus 153 ~la~~al~~~~~~d~~sg~~i~v~vi~~~g~~~~~l~ 189 (199)
T 3unf_N 153 RFTTNAITLAMNRDGSSGGVIYLVTITAAGVDHRVIL 189 (199)
T ss_dssp HHHHHHHHHHHHHCTTCCSCEEEEEECSSCEEEEEEC
T ss_pred HHHHHHHHHHHHhccccCCCeEEEEEcCCCEEEEEcC
Confidence 99999999999998 58999999999998765553
No 46
>2z3b_A ATP-dependent protease HSLV; N-terminal nucleophIle hydrolase; 2.50A {Bacillus subtilis} SCOP: d.153.1.4 PDB: 2z3a_A 1yyf_D* 3ty6_A
Probab=100.00 E-value=2.5e-35 Score=235.39 Aligned_cols=165 Identities=15% Similarity=0.128 Sum_probs=145.9
Q ss_pred hcCCcEEEEEeCCEEEEEEeecccc-cc-cccCccccEEEe-cCcEEEEEeccHHHHHHHHHHHHHHHHHhhhhcCCCCC
Q 027555 28 RKGNAAVGVRGTDTIVLGVEKKSTV-KL-QDSRSVRKIVSL-DNHIALACAGLKADARVLINRARIECQSHRLTVEDPVT 104 (222)
Q Consensus 28 ~~G~t~igi~~~dgVvla~d~~~~~-~l-~~~~~~~Ki~~i-~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~i~ 104 (222)
.+|+|+|||+++||||||+|+|.+. .+ +.+++.+||++| ++|++++++|..+|++.+.++++.+++.|+ +
T Consensus 3 ~~GtTivgi~~~dgVvlaaD~r~t~g~~~i~~~~~~KI~~i~~~~i~~~~aG~~aD~~~l~~~~~~~~~~y~---g---- 75 (180)
T 2z3b_A 3 FHATTIFAVQHKGRSAMSGDGQVTFGQAVVMKHTARKVRKLFNGKVLAGFAGSVADAFTLFEKFEAKLEEYN---G---- 75 (180)
T ss_dssp BCCCCEEEEEETTEEEEEECCCEEETTTEEEESCCCCEEEETTTTEEEEECSCHHHHHHHHHHHHHHHHHTT---T----
T ss_pred CCCeEEEEEEECCEEEEEECCCccCCCceEecCCCCcEEEECCCCEEEEeCchHHHHHHHHHHHHHHHHHhc---C----
Confidence 5799999999999999999999998 57 888999999999 999999999999999999999999999988 3
Q ss_pred HHHHHHHHHHHHHhhcccCCCccceeeeEEEEEeCCCCccEEEEECCCCceec--ccEEEecCChHHHHHHHHhhcCC--
Q 027555 105 VEYITRYIAGLQQKYTQSGGVRPFGLSTLIVGFDPYTGVPSLYQTDPSGTFSA--WKANATGRNSNSMREFLEKNYKE-- 180 (222)
Q Consensus 105 ~~~la~~ls~~~~~~~~~~~~rP~~v~~ivaG~d~~~~gp~ly~iD~~G~~~~--~~~~a~G~g~~~~~~~Le~~~~~-- 180 (222)
.+.+.++.+.+.+++...+|||++++||| | +|+||.+||+|++.+ ++++|+|+|+++++++||+.|++
T Consensus 76 --~~~~~~~~l~~~~~~~~~~rp~~~~~lva--d----~p~ly~~d~~G~~~~~~~~~~a~Gsgs~~a~~~le~~~~~~~ 147 (180)
T 2z3b_A 76 --NLKRAAVELAKEWRSDKVLRKLEAMLIVM--N----QDTLLLVSGTGEVIEPDDGILAIGSGGNYALAAGRALKKHAG 147 (180)
T ss_dssp --CHHHHHHHHHHHHHHCTTGGGCCCCEEEE--C----SSCEEEECTTCCEECCSSSEEEESTTHHHHHHHHHHHHHHHG
T ss_pred --ChHHHHHHHHHHHHhhhCcCcceEEEEEE--c----CCeEEEECCCCcEEEeCCCEEEECCCHHHHHHHHHHhhhccC
Confidence 23333444455556667789999999999 5 599999999999997 59999999999999999999998
Q ss_pred -CCh-HHHHHHHHHHHHHHhhcC---CCceEEEEE
Q 027555 181 -TSG-QETIKLAIRALLEVCSFL---YFRMSLGMV 210 (222)
Q Consensus 181 -~ls-~ea~~l~~~~l~~~~~~d---~~~~~v~~v 210 (222)
+|+ +| ++++||+.+.+|| ..+++|.+|
T Consensus 148 ~~mt~ee---l~~~al~~a~~rd~~sg~~i~v~~i 179 (180)
T 2z3b_A 148 ESMSASE---IARAALETAGEICVYTNDQIILEEL 179 (180)
T ss_dssp GGCCHHH---HHHHHHHHHHHHCTTCCSCCEEEEE
T ss_pred CCCCHHH---HHHHHHHHHHHhcCccCCeEEEEEE
Confidence 999 88 5779999999998 568888766
No 47
>1g3k_A ATP-dependent protease HSLV; hydrolase; 1.90A {Haemophilus influenzae} SCOP: d.153.1.4 PDB: 1g3i_G 1jjw_A 1kyi_G* 1ofh_G* 1ofi_G* 1e94_A* 1g4a_B* 1g4b_M 1hqy_A* 1ht1_C* 1ht2_A* 1ned_A
Probab=100.00 E-value=2.5e-34 Score=228.30 Aligned_cols=163 Identities=14% Similarity=0.141 Sum_probs=142.9
Q ss_pred CcEEEEEeCCEEEEEEeeccccc-ccccCccccEEEe-cCcEEEEEeccHHHHHHHHHHHHHHHHHhhhhcCCCCCHHHH
Q 027555 31 NAAVGVRGTDTIVLGVEKKSTVK-LQDSRSVRKIVSL-DNHIALACAGLKADARVLINRARIECQSHRLTVEDPVTVEYI 108 (222)
Q Consensus 31 ~t~igi~~~dgVvla~d~~~~~~-l~~~~~~~Ki~~i-~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~i~~~~l 108 (222)
+|+|||+++||||||+|+|.+++ ++.+++.+||++| ++|++++++|..+|++.|.++++.+++.|++ +.
T Consensus 1 tT~vgi~~~dgVvlaaD~r~t~g~~i~~~~~~Ki~~i~~~~i~~~~aG~~aD~~~l~~~~~~~~~~~~~------~~--- 71 (174)
T 1g3k_A 1 TTIVSVRRNGQVVVGGDGQVSLGNTVMKGNARKVRRLYNGKVLAGFAGGTADAFTLFELFERKLEMHQG------HL--- 71 (174)
T ss_dssp CCEEEEEETTEEEEEECCCEEETTEEEESCCCCEEEETTTTEEEEEESCHHHHHHHHHHHHHHHHHTTT------CH---
T ss_pred CeEEEEEECCEEEEEECCCCccCCeeEeCCCCcEEEECCCCEEEEeCccHHHHHHHHHHHHHHHHHhcC------cH---
Confidence 68999999999999999999985 7788899999999 9999999999999999999999999999985 23
Q ss_pred HHHHHHHHHhhcccCCCccceeeeEEEEEeCCCCccEEEEECCCCceeccc---EEEecCChHHHHHHHHhhcC-CCCh-
Q 027555 109 TRYIAGLQQKYTQSGGVRPFGLSTLIVGFDPYTGVPSLYQTDPSGTFSAWK---ANATGRNSNSMREFLEKNYK-ETSG- 183 (222)
Q Consensus 109 a~~ls~~~~~~~~~~~~rP~~v~~ivaG~d~~~~gp~ly~iD~~G~~~~~~---~~a~G~g~~~~~~~Le~~~~-~~ls- 183 (222)
.+.++.+.+.++++...||+ +++++|+| +|+||.+||+|++.+++ ++|+|+|+++++++||++|+ ++|+
T Consensus 72 ~~~~~~l~~~~~~~~~~r~~--~~~l~g~d----~p~Ly~~d~~G~~~~~~~~~~~a~Gsgs~~a~~~le~~~~~~~mt~ 145 (174)
T 1g3k_A 72 LKSAVELAKDWRTDRALRKL--EAMLIVAD----EKESLIITGIGDVVQPEEDQILAIGSGGNYALSAARALVENTELSA 145 (174)
T ss_dssp HHHHHHHHHHHHHSTTGGGC--CCEEEEEC----SSCEEEEETTTEEECCCTTCEEEESTTHHHHHHHHHHHHHHCCCCH
T ss_pred HHHHHHHHHHHHhccCcCcc--eEEEEEEC----CCEEEEEcCCCcEEecCCCcEEEEcccHHHHHHHHHHhcccCCCCH
Confidence 34444445555566667775 56788886 69999999999999988 99999999999999999999 9998
Q ss_pred HHHHHHHHHHHHHHhhcC---CCceEEEEEe
Q 027555 184 QETIKLAIRALLEVCSFL---YFRMSLGMVI 211 (222)
Q Consensus 184 ~ea~~l~~~~l~~~~~~d---~~~~~v~~v~ 211 (222)
+ +++++||+.+.+|| ..+++|.+|+
T Consensus 146 ~---~l~~~al~~a~~rd~~sg~~i~v~~i~ 173 (174)
T 1g3k_A 146 H---EIVEKSLRIAGDICVFTNTNFTIEELP 173 (174)
T ss_dssp H---HHHHHHHHHHHHHCTTCCSCCEEEEEC
T ss_pred H---HHHHHHHHHHHHhccccCCceEEEEec
Confidence 5 79999999999998 5799999774
No 48
>1m4y_A ATP-dependent protease HSLV; N-terminal catalytic threonine residue, hydrolase; 2.10A {Thermotoga maritima} SCOP: d.153.1.4
Probab=100.00 E-value=3.6e-34 Score=226.72 Aligned_cols=162 Identities=14% Similarity=0.134 Sum_probs=141.1
Q ss_pred CcEEEEEeCCEEEEEEeecccc-cccccCccccEEEe-cCcEEEEEeccHHHHHHHHHHHHHHHHHhhhhcCCCCCHHHH
Q 027555 31 NAAVGVRGTDTIVLGVEKKSTV-KLQDSRSVRKIVSL-DNHIALACAGLKADARVLINRARIECQSHRLTVEDPVTVEYI 108 (222)
Q Consensus 31 ~t~igi~~~dgVvla~d~~~~~-~l~~~~~~~Ki~~i-~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~i~~~~l 108 (222)
+|+|||+++||||||+|+|.++ .++.+++.+||++| ++|++++++|..+|++.+.++++.+++.|+++ .++.+
T Consensus 1 tt~vgi~~~dgVvlaaD~r~~~g~~i~~~~~~Ki~~i~~~~i~~~~aG~~aD~~~l~~~~~~~~~~~~~~-----~~~~~ 75 (171)
T 1m4y_A 1 TTILVVRRNGQTVMGGDGQVTFGSTVLKGNARKVRKLGEGKVLAGFAGSVADAMTLFDRFEAKLREWGGN-----LTKAA 75 (171)
T ss_dssp CCEEEEEETTEEEEEECCCEEETTEEEESCCCCEEEETTTTEEEEEESCHHHHHHHHHHHHHHHHHTTTC-----HHHHH
T ss_pred CeEEEEEECCEEEEEECCCcccCCEEEeCCcceEEEeCCCCEEEEeCccHHHHHHHHHHHHHHHHHhccc-----HHHHH
Confidence 6899999999999999999998 57888899999999 99999999999999999999999999998855 25555
Q ss_pred HHHHHHHHHhhcccCCCccceeeeEEEEEeCCCCccEEEEECCCCceeccc--EEEecCChHHHHHHHHhhcC-CCChHH
Q 027555 109 TRYIAGLQQKYTQSGGVRPFGLSTLIVGFDPYTGVPSLYQTDPSGTFSAWK--ANATGRNSNSMREFLEKNYK-ETSGQE 185 (222)
Q Consensus 109 a~~ls~~~~~~~~~~~~rP~~v~~ivaG~d~~~~gp~ly~iD~~G~~~~~~--~~a~G~g~~~~~~~Le~~~~-~~ls~e 185 (222)
++.. +.++++...|||++++|++ | ||+||.+||+|++.+++ ++|+|+|+++++++||+.|+ ++|+.
T Consensus 76 ~~l~----~~~~~~~~~~~~~~~~lv~--D----~p~Ly~~d~~G~~~~~~~~~~a~Gsgs~~a~~~le~~~~~~~ms~- 144 (171)
T 1m4y_A 76 VELA----KDWRTDRVLRRLEALLLVA--D----KENIFIISGNGEVIQPDDDAAAIGSGGPYALAAAKALLRNTDLSA- 144 (171)
T ss_dssp HHHH----HHHHHCTTGGGCCCEEEEE--C----SSCEEEECTTSCEECCSSSEEEESTTHHHHHHHHHHHHHHCCCCH-
T ss_pred HHHH----HHHHHhCCCCceEEEEEEE--c----CCEEEEECCCCCEEecCCCEEEECCcHHHHHHHHHHhcccCCCCH-
Confidence 5543 3344455678899998888 5 79999999999999987 99999999999999999999 99983
Q ss_pred HHHHHHHHHHHHhhcC---CCceEEEE
Q 027555 186 TIKLAIRALLEVCSFL---YFRMSLGM 209 (222)
Q Consensus 186 a~~l~~~~l~~~~~~d---~~~~~v~~ 209 (222)
++++++||+.+.+|| ..+++|.+
T Consensus 145 -~~l~~~al~~a~~rd~~sg~~i~v~~ 170 (171)
T 1m4y_A 145 -REIVEKAMTIAGEICIYTNQNIVIEE 170 (171)
T ss_dssp -HHHHHHHHHHHHHHCTTCCSCCEEEE
T ss_pred -HHHHHHHHHHHHHhCcccCCeEEEEE
Confidence 568999999999998 56777753
No 49
>3jx9_A Putative phosphoheptose isomerase; YP_001815198.1, structura genomics, joint center for structural genomics, JCSG; HET: MSE; 1.95A {Exiguobacterium sibiricum 255-15}
Probab=48.24 E-value=12 Score=28.45 Aligned_cols=31 Identities=10% Similarity=-0.026 Sum_probs=28.5
Q ss_pred CeeeCCCCccc-hhhhHHHHHhcCCcEEEEEe
Q 027555 8 ITVFSPDGHLF-QVEYALEAVRKGNAAVGVRG 38 (222)
Q Consensus 8 ~~~fsp~G~l~-q~eya~~a~~~G~t~igi~~ 38 (222)
+-+||+.|+-- .+|-|+++-.+|-++|+|..
T Consensus 81 vii~S~Sg~n~~~ie~A~~ake~G~~vIaITs 112 (170)
T 3jx9_A 81 VLIFTPDTERSDLLASLARYDAWHTPYSIITL 112 (170)
T ss_dssp EEEEESCSCCHHHHHHHHHHHHHTCCEEEEES
T ss_pred EEEEeCCCCCHHHHHHHHHHHHCCCcEEEEeC
Confidence 55899999988 88999999999999999988
No 50
>3fpw_A HBPS, extracellular HAEM-binding protein; heme binding protein; 1.60A {Streptomyces reticuli} PDB: 3fpv_A
Probab=35.03 E-value=78 Score=24.48 Aligned_cols=40 Identities=13% Similarity=-0.093 Sum_probs=34.0
Q ss_pred CCCCh-HHHHHHHHHHHHHHhhcCCCceEEEEEecCceEEee
Q 027555 179 KETSG-QETIKLAIRALLEVCSFLYFRMSLGMVITKYYEHLY 219 (222)
Q Consensus 179 ~~~ls-~ea~~l~~~~l~~~~~~d~~~~~v~~v~~~~~~~~~ 219 (222)
.+.++ ++|.+++..++..+.++.. .+.|.|||..|....+
T Consensus 62 ~~~ltl~~A~~l~~aA~~~A~~~g~-pV~IaVvD~~G~lla~ 102 (192)
T 3fpw_A 62 STHLTLEAATKAARAAVEAAEKDGR-HVSVAVVDRNGNTLVT 102 (192)
T ss_dssp CCCCCHHHHHHHHHHHHHHHHHTTC-CCEEEEEETTSCEEEE
T ss_pred cCCCCHHHHHHHHHHHHHHHHhcCC-CEEEEEEeCCCCEEEE
Confidence 46789 9999999999999999876 7999999988876644
No 51
>2yxo_A Histidinol phosphatase; metal-dependent, hydrolase; 1.60A {Thermus thermophilus} PDB: 2yz5_A 2z4g_A
Probab=32.89 E-value=30 Score=27.32 Aligned_cols=32 Identities=22% Similarity=0.109 Sum_probs=27.7
Q ss_pred eeeCCCCccchhhhHHHHHhcCCcEEEEEeCC
Q 027555 9 TVFSPDGHLFQVEYALEAVRKGNAAVGVRGTD 40 (222)
Q Consensus 9 ~~fsp~G~l~q~eya~~a~~~G~t~igi~~~d 40 (222)
|.||++|....-|++..|...|-+.||++--+
T Consensus 8 t~~S~DG~~~~ee~v~~A~~~Gl~~iaiTDH~ 39 (267)
T 2yxo_A 8 TPLCGHAEGHPEAYLEEARAKGLKGVVFTDHS 39 (267)
T ss_dssp CGGGSSCCSCHHHHHHHHHHTTCSEEEEEEEC
T ss_pred cCCCCCCCCCHHHHHHHHHHcCCCEEEEcCCC
Confidence 46889999988899999999999999987543
No 52
>2a2l_A Unknown; structural genomics, PSI, protein structure initiat YORK SGX research center for structural genomics, NYSGXRC, function; 2.20A {Klebsiella pneumoniae} SCOP: d.110.9.1
Probab=31.11 E-value=47 Score=24.32 Aligned_cols=37 Identities=8% Similarity=-0.059 Sum_probs=30.6
Q ss_pred CCCh-HHHHHHHHHHHHHHhhcCCCceEEEEEecCceEE
Q 027555 180 ETSG-QETIKLAIRALLEVCSFLYFRMSLGMVITKYYEH 217 (222)
Q Consensus 180 ~~ls-~ea~~l~~~~l~~~~~~d~~~~~v~~v~~~~~~~ 217 (222)
+.++ ++|.+++..+...+.++.. .+.|.||+..|-..
T Consensus 10 ~~lt~~~A~~l~~aa~~~A~~~g~-~v~IaVvD~~G~ll 47 (145)
T 2a2l_A 10 QTITLAAAQQMAAAVEKKATEINV-AVVFSVVDRGGNTL 47 (145)
T ss_dssp EEECHHHHHHHHHHHHHHHHHTTC-CCEEEEEETTSCEE
T ss_pred cCCCHHHHHHHHHHHHHHHHHcCC-CEEEEEEECCCCEE
Confidence 3578 9999999999999988754 79999999777665
No 53
>3rj2_X ORF158L protein, putative uncharacterized protein; histone 3, protein binding; 2.20A {Singapore grouper iridovirus}
Probab=25.04 E-value=19 Score=25.73 Aligned_cols=17 Identities=18% Similarity=0.362 Sum_probs=13.3
Q ss_pred CCCCCCeeeCCCCccch
Q 027555 3 RYDRAITVFSPDGHLFQ 19 (222)
Q Consensus 3 ~yd~~~~~fsp~G~l~q 19 (222)
+-|..+|.|+|.||+.-
T Consensus 54 gm~h~vTfF~~~Grl~~ 70 (138)
T 3rj2_X 54 FMRHRVTFFNATGRYIT 70 (138)
T ss_dssp TCEEEEEEECTTSCEEE
T ss_pred cceeEEEEEcCCCcEEE
Confidence 45667899999998754
No 54
>4gof_A Small glutamine-rich tetratricopeptide repeat-CON protein alpha; four-helix bundle, protein-protein interaction, UBL4A ubiqui domain; 1.35A {Homo sapiens} PDB: 4goe_A 4god_A
Probab=22.81 E-value=1.3e+02 Score=18.01 Aligned_cols=32 Identities=22% Similarity=0.367 Sum_probs=22.2
Q ss_pred HHHHHHhhcC-CCCh---HHHHHHHHHHHHHHhhcC
Q 027555 170 MREFLEKNYK-ETSG---QETIKLAIRALLEVCSFL 201 (222)
Q Consensus 170 ~~~~Le~~~~-~~ls---~ea~~l~~~~l~~~~~~d 201 (222)
+-.+|..... ..++ .|.+++|++||.++..=+
T Consensus 9 Ii~FL~~~~~~~~~s~D~~ESleVAiqCi~~aF~v~ 44 (52)
T 4gof_A 9 IIQFLHDQLRHGGLSSDAQESLEVAIQCLETAFGVT 44 (52)
T ss_dssp HHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHHTCC
T ss_pred HHHHHHHhcccCCcCHhHHHHHHHHHHHHHHHcCCC
Confidence 3445554433 4566 778999999999998754
No 55
>4eo3_A Bacterioferritin comigratory protein/NADH dehydro; thioredoxin-fold, alpha-beta-aplha sandwich fold, antioxidan oxidoreductase, FMN binding; HET: FMN; 1.65A {Thermotoga maritima}
Probab=20.96 E-value=31 Score=28.72 Aligned_cols=45 Identities=18% Similarity=0.189 Sum_probs=30.7
Q ss_pred ccEEEEECCCCceecc-cEEEecCChHHHHHHHHhhcCCCCh-HHHH
Q 027555 143 VPSLYQTDPSGTFSAW-KANATGRNSNSMREFLEKNYKETSG-QETI 187 (222)
Q Consensus 143 gp~ly~iD~~G~~~~~-~~~a~G~g~~~~~~~Le~~~~~~ls-~ea~ 187 (222)
-|..|.||+.|.+... .-+-.+.....+...|++.-.++|+ .|++
T Consensus 102 ~r~tfiId~~G~i~~~~~~v~~~~h~~~~l~~~~~~~~~~~~~~~~I 148 (322)
T 4eo3_A 102 VRSTFLIDRWGFVRKEWRRVKVEGHVQEVKEALDRLIEEDLSLNKHI 148 (322)
T ss_dssp CCEEEEECTTSBEEEEEESCCSTTHHHHHHHHHHHHHHHHTSCCHHH
T ss_pred ccEEEEECCCCEEEEEEeCCCccccHHHHHHHHhhhchhhhHHHHHH
Confidence 3688999999999763 3345555667777777776555555 5544
Done!