Query 027557
Match_columns 222
No_of_seqs 251 out of 3817
Neff 9.7
Searched_HMMs 46136
Date Fri Mar 29 11:42:26 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/027557.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/027557hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF14580 LRR_9: Leucine-rich r 99.9 4.5E-24 9.8E-29 159.2 6.4 144 5-150 19-164 (175)
2 KOG1259 Nischarin, modulator o 99.6 3.3E-17 7.2E-22 129.2 1.5 128 8-137 287-440 (490)
3 KOG0617 Ras suppressor protein 99.6 2.9E-18 6.3E-23 125.2 -4.4 122 6-131 34-155 (264)
4 KOG1644 U2-associated snRNP A' 99.6 4.7E-16 1E-20 116.0 3.6 142 5-148 19-162 (233)
5 KOG0617 Ras suppressor protein 99.6 2.1E-16 4.5E-21 115.5 -1.6 120 6-131 57-178 (264)
6 KOG4194 Membrane glycoprotein 99.6 4.1E-16 9E-21 132.2 -0.5 131 2-135 289-425 (873)
7 KOG0444 Cytoskeletal regulator 99.5 1.5E-15 3.3E-20 130.0 1.2 126 7-136 105-255 (1255)
8 KOG0444 Cytoskeletal regulator 99.5 5.2E-15 1.1E-19 126.8 0.1 118 6-131 79-199 (1255)
9 KOG0472 Leucine-rich repeat pr 99.4 2E-14 4.4E-19 117.3 1.1 101 10-112 417-541 (565)
10 KOG4194 Membrane glycoprotein 99.4 1E-13 2.2E-18 118.0 4.2 127 5-135 78-230 (873)
11 PLN00113 leucine-rich repeat r 99.4 6.4E-13 1.4E-17 124.2 9.3 105 7-112 142-249 (968)
12 PF14580 LRR_9: Leucine-rich r 99.4 1.2E-13 2.7E-18 103.2 3.6 120 11-137 3-126 (175)
13 KOG1259 Nischarin, modulator o 99.4 3.5E-14 7.7E-19 112.3 0.3 89 24-115 280-368 (490)
14 PLN00113 leucine-rich repeat r 99.4 1.1E-12 2.4E-17 122.6 9.1 107 6-113 165-274 (968)
15 KOG0532 Leucine-rich repeat (L 99.4 8E-14 1.7E-18 118.1 1.1 130 2-135 140-269 (722)
16 KOG0472 Leucine-rich repeat pr 99.4 8.1E-14 1.7E-18 113.9 -0.5 127 7-137 390-541 (565)
17 KOG0618 Serine/threonine phosp 99.3 3.7E-13 8.1E-18 119.5 -0.8 107 6-114 384-491 (1081)
18 KOG1859 Leucine-rich repeat pr 99.3 2.2E-13 4.8E-18 118.4 -2.6 117 7-126 189-306 (1096)
19 KOG0618 Serine/threonine phosp 99.3 1E-12 2.2E-17 116.8 1.4 124 6-137 360-487 (1081)
20 KOG4237 Extracellular matrix p 99.3 3.4E-13 7.3E-18 109.9 -1.7 108 7-115 69-180 (498)
21 PLN03150 hypothetical protein; 99.3 2.6E-11 5.7E-16 108.1 9.3 106 7-113 420-529 (623)
22 KOG4237 Extracellular matrix p 99.2 3E-12 6.4E-17 104.5 2.5 109 19-129 264-375 (498)
23 PF13855 LRR_8: Leucine rich r 99.2 7.7E-12 1.7E-16 77.5 3.6 57 29-85 2-60 (61)
24 KOG2123 Uncharacterized conser 99.2 1.9E-12 4E-17 101.4 0.4 117 26-144 17-135 (388)
25 PF13855 LRR_8: Leucine rich r 99.2 1.2E-11 2.6E-16 76.6 2.9 60 51-111 1-61 (61)
26 KOG0532 Leucine-rich repeat (L 99.2 4.2E-12 9E-17 107.9 0.3 126 8-141 124-251 (722)
27 PRK15370 E3 ubiquitin-protein 99.1 1.2E-10 2.6E-15 105.1 8.3 100 7-116 201-300 (754)
28 PRK15387 E3 ubiquitin-protein 99.1 8.5E-11 1.8E-15 105.9 6.4 58 52-114 403-460 (788)
29 PRK15370 E3 ubiquitin-protein 99.1 3.2E-11 6.9E-16 108.8 3.6 103 6-116 284-405 (754)
30 KOG4579 Leucine-rich repeat (L 99.1 1E-11 2.2E-16 87.7 -1.3 105 9-115 31-139 (177)
31 KOG2739 Leucine-rich acidic nu 99.0 1.4E-10 3E-15 90.1 2.8 120 20-140 35-157 (260)
32 cd00116 LRR_RI Leucine-rich re 99.0 7.7E-10 1.7E-14 90.7 7.4 130 6-135 82-230 (319)
33 PRK15387 E3 ubiquitin-protein 99.0 6.5E-10 1.4E-14 100.3 7.2 99 8-116 204-319 (788)
34 cd00116 LRR_RI Leucine-rich re 99.0 7E-10 1.5E-14 90.9 6.7 127 7-135 110-259 (319)
35 COG4886 Leucine-rich repeat (L 99.0 2.4E-10 5.3E-15 96.7 2.7 102 7-110 118-220 (394)
36 COG4886 Leucine-rich repeat (L 99.0 2.3E-10 5E-15 96.9 1.9 106 6-113 141-246 (394)
37 KOG1859 Leucine-rich repeat pr 98.9 4.4E-11 9.4E-16 104.4 -3.2 127 7-140 166-295 (1096)
38 KOG2982 Uncharacterized conser 98.9 2.9E-10 6.2E-15 90.1 1.2 148 7-154 73-307 (418)
39 PLN03150 hypothetical protein; 98.9 2.7E-09 5.8E-14 95.3 7.2 85 29-114 419-505 (623)
40 KOG4579 Leucine-rich repeat (L 98.9 1.2E-10 2.6E-15 82.3 -1.4 110 4-115 52-162 (177)
41 KOG3207 Beta-tubulin folding c 98.9 2.2E-10 4.7E-15 94.7 -1.0 120 27-146 245-374 (505)
42 KOG0531 Protein phosphatase 1, 98.9 5.1E-10 1.1E-14 95.5 0.6 106 7-115 97-202 (414)
43 PLN03210 Resistant to P. syrin 98.8 1.2E-08 2.6E-13 97.2 9.0 118 6-133 779-900 (1153)
44 PF12799 LRR_4: Leucine Rich r 98.8 7.6E-09 1.7E-13 59.3 3.8 35 30-64 3-37 (44)
45 KOG0531 Protein phosphatase 1, 98.8 1.3E-09 2.8E-14 93.0 0.8 117 8-131 75-191 (414)
46 PF12799 LRR_4: Leucine Rich r 98.8 8.3E-09 1.8E-13 59.2 3.7 41 51-91 1-41 (44)
47 KOG1644 U2-associated snRNP A' 98.7 9.2E-09 2E-13 77.3 3.8 100 8-108 45-149 (233)
48 PLN03210 Resistant to P. syrin 98.7 4.2E-08 9.2E-13 93.4 9.0 105 7-115 591-698 (1153)
49 KOG4658 Apoptotic ATPase [Sign 98.7 1.6E-08 3.4E-13 93.0 5.5 104 6-110 546-653 (889)
50 KOG3207 Beta-tubulin folding c 98.6 1.4E-08 3.1E-13 84.2 1.8 124 7-132 199-332 (505)
51 KOG4658 Apoptotic ATPase [Sign 98.6 4.3E-08 9.4E-13 90.1 4.1 122 6-134 524-650 (889)
52 KOG2123 Uncharacterized conser 98.3 4.9E-08 1.1E-12 77.0 -1.4 97 7-105 21-123 (388)
53 KOG3665 ZYG-1-like serine/thre 98.3 1.3E-06 2.9E-11 78.6 6.0 130 6-136 123-260 (699)
54 KOG2739 Leucine-rich acidic nu 98.1 1.2E-06 2.5E-11 68.5 2.0 98 8-106 46-150 (260)
55 KOG1909 Ran GTPase-activating 98.0 7.7E-06 1.7E-10 66.5 4.9 129 6-134 93-249 (382)
56 KOG3665 ZYG-1-like serine/thre 97.9 1.8E-05 3.9E-10 71.4 5.9 122 7-131 150-280 (699)
57 PRK15386 type III secretion pr 97.9 3.9E-05 8.4E-10 64.7 7.0 68 7-85 54-123 (426)
58 KOG1909 Ran GTPase-activating 97.8 3.5E-05 7.6E-10 62.8 5.4 132 5-136 157-308 (382)
59 PF13306 LRR_5: Leucine rich r 97.7 7.3E-05 1.6E-09 52.9 5.5 97 6-108 13-112 (129)
60 KOG0473 Leucine-rich repeat pr 97.7 5.4E-07 1.2E-11 69.5 -5.9 95 16-112 29-124 (326)
61 KOG3763 mRNA export factor TAP 97.7 3.1E-05 6.7E-10 66.5 3.6 92 48-140 215-315 (585)
62 PRK15386 type III secretion pr 97.7 9.3E-05 2E-09 62.5 6.0 93 6-110 73-188 (426)
63 KOG2982 Uncharacterized conser 97.6 2.6E-05 5.6E-10 62.5 1.2 101 9-109 49-156 (418)
64 KOG2120 SCF ubiquitin ligase, 97.5 8.2E-06 1.8E-10 65.3 -2.0 130 4-136 184-348 (419)
65 PF13306 LRR_5: Leucine rich r 97.3 0.00077 1.7E-08 47.5 6.0 94 3-102 32-129 (129)
66 PF00560 LRR_1: Leucine Rich R 97.2 0.00015 3.2E-09 34.8 1.1 16 30-45 2-17 (22)
67 PF00560 LRR_1: Leucine Rich R 97.1 0.00017 3.7E-09 34.6 0.7 21 52-72 1-21 (22)
68 KOG0473 Leucine-rich repeat pr 97.1 7.6E-06 1.7E-10 63.3 -6.6 83 5-87 42-124 (326)
69 COG5238 RNA1 Ran GTPase-activa 97.1 0.0022 4.8E-08 51.1 6.6 83 6-88 31-134 (388)
70 KOG2120 SCF ubiquitin ligase, 96.8 0.00031 6.7E-09 56.5 -0.2 130 6-137 235-374 (419)
71 PF13504 LRR_7: Leucine rich r 96.7 0.0011 2.4E-08 29.6 1.6 15 29-43 2-16 (17)
72 COG5238 RNA1 Ran GTPase-activa 96.6 0.011 2.5E-07 47.2 7.5 129 6-134 93-250 (388)
73 PF13504 LRR_7: Leucine rich r 96.5 0.0015 3.3E-08 29.1 1.3 16 52-67 2-17 (17)
74 smart00370 LRR Leucine-rich re 95.7 0.01 2.2E-07 29.4 2.2 16 52-67 3-18 (26)
75 smart00369 LRR_TYP Leucine-ric 95.7 0.01 2.2E-07 29.4 2.2 16 52-67 3-18 (26)
76 smart00370 LRR Leucine-rich re 95.6 0.0093 2E-07 29.6 1.7 20 27-46 1-20 (26)
77 smart00369 LRR_TYP Leucine-ric 95.6 0.0093 2E-07 29.6 1.7 20 27-46 1-20 (26)
78 TIGR00864 PCC polycystin catio 95.5 0.011 2.4E-07 60.0 3.2 78 80-159 1-81 (2740)
79 KOG1947 Leucine rich repeat pr 93.7 0.085 1.8E-06 45.5 4.1 124 8-132 191-327 (482)
80 KOG3864 Uncharacterized conser 92.9 0.041 8.8E-07 42.0 0.8 35 74-109 151-186 (221)
81 smart00365 LRR_SD22 Leucine-ri 92.7 0.1 2.2E-06 26.0 1.8 15 29-43 3-17 (26)
82 smart00364 LRR_BAC Leucine-ric 92.6 0.074 1.6E-06 26.4 1.2 16 52-67 3-18 (26)
83 KOG3864 Uncharacterized conser 90.4 0.096 2.1E-06 40.1 0.4 78 5-83 101-185 (221)
84 KOG4308 LRR-containing protein 90.2 0.015 3.2E-07 50.7 -4.7 40 74-113 262-304 (478)
85 PF13516 LRR_6: Leucine Rich r 89.0 0.19 4.1E-06 24.2 0.7 14 28-41 2-15 (24)
86 KOG1947 Leucine rich repeat pr 86.3 0.85 1.8E-05 39.3 3.7 110 25-137 185-306 (482)
87 KOG3763 mRNA export factor TAP 86.1 0.44 9.5E-06 41.8 1.7 63 25-88 215-284 (585)
88 smart00446 LRRcap occurring C- 83.9 0.97 2.1E-05 22.4 1.7 21 115-135 2-22 (26)
89 KOG4308 LRR-containing protein 83.8 0.089 1.9E-06 45.9 -3.5 109 4-112 203-331 (478)
90 smart00368 LRR_RI Leucine rich 83.7 0.87 1.9E-05 22.9 1.6 13 29-41 3-15 (28)
91 KOG4341 F-box protein containi 76.6 2.4 5.2E-05 36.2 2.8 128 8-137 297-437 (483)
92 TIGR00864 PCC polycystin catio 68.1 3.2 7E-05 43.4 1.9 32 11-42 1-33 (2740)
93 smart00367 LRR_CC Leucine-rich 52.1 10 0.00022 18.3 1.2 11 28-38 2-12 (26)
94 KOG4341 F-box protein containi 31.9 89 0.0019 27.1 4.4 89 25-113 291-386 (483)
95 KOG4231 Intracellular membrane 30.0 9.3 0.0002 33.6 -1.6 48 8-55 107-154 (763)
No 1
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=99.90 E-value=4.5e-24 Score=159.23 Aligned_cols=144 Identities=30% Similarity=0.399 Sum_probs=74.4
Q ss_pred CCccEEEeecCCCccchhhhc-CCCCCcEEEcccCCCccccccccCCccCCEEecccCcCCcCchhh-hCCCCCceeecc
Q 027557 5 IRDCPAVLSRNPIREIGDSLL-NMKAITKLSLSNCQVQIIGSSLKSCTELKELRLAHNDIKTLPAEL-AFNKKLQNLDLG 82 (222)
Q Consensus 5 ~~~~~L~L~~n~l~~lp~~~~-~l~~L~~L~L~~n~i~~lp~~~~~l~~L~~L~l~~N~i~~lp~~~-~~l~~L~~L~L~ 82 (222)
..+++|+|++|.|+.| +.+. .+.+|+.|+|++|.|+.++ ++..+++|+.|++++|+|+.+++.+ ..+++|++|+|+
T Consensus 19 ~~~~~L~L~~n~I~~I-e~L~~~l~~L~~L~Ls~N~I~~l~-~l~~L~~L~~L~L~~N~I~~i~~~l~~~lp~L~~L~L~ 96 (175)
T PF14580_consen 19 VKLRELNLRGNQISTI-ENLGATLDKLEVLDLSNNQITKLE-GLPGLPRLKTLDLSNNRISSISEGLDKNLPNLQELYLS 96 (175)
T ss_dssp ------------------S--TT-TT--EEE-TTS--S--T-T----TT--EEE--SS---S-CHHHHHH-TT--EEE-T
T ss_pred cccccccccccccccc-cchhhhhcCCCEEECCCCCCcccc-CccChhhhhhcccCCCCCCccccchHHhCCcCCEEECc
Confidence 4568999999999998 4565 5889999999999999998 7899999999999999999997665 468999999999
Q ss_pred CCccCCCcchHhhcCCCCCCEEEeeCCCCCCchhHHHHHHHhCCccccccCCCCChhhHhhhHHHHhh
Q 027557 83 KNLITRWSELKVLKSLVSLNNLNLQGNPVAEYDKLAKKVKNLLPSLHIFNARPINRITKNEKDNIVDK 150 (222)
Q Consensus 83 ~N~i~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~l~~~~~~~~~~~~~~~~~~~ 150 (222)
+|+|.++..+..+..+++|+.|++.+||++..+.|+.+++..+|+|+.||+..++..++..+...+.+
T Consensus 97 ~N~I~~l~~l~~L~~l~~L~~L~L~~NPv~~~~~YR~~vi~~lP~Lk~LD~~~V~~~ER~~A~~~f~~ 164 (175)
T PF14580_consen 97 NNKISDLNELEPLSSLPKLRVLSLEGNPVCEKKNYRLFVIYKLPSLKVLDGQDVTEEERQEAEKLFKG 164 (175)
T ss_dssp TS---SCCCCGGGGG-TT--EEE-TT-GGGGSTTHHHHHHHH-TT-SEETTEETTS-B----------
T ss_pred CCcCCChHHhHHHHcCCCcceeeccCCcccchhhHHHHHHHHcChhheeCCEEccHHHhccccccccc
Confidence 99999999888899999999999999999999999999999999999999999999988887665543
No 2
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=99.65 E-value=3.3e-17 Score=129.22 Aligned_cols=128 Identities=29% Similarity=0.326 Sum_probs=92.3
Q ss_pred cEEEeecCCCccchhhhcCCCCCcEEEcccCCCccccccccCCccCCEEecccCcCC-----------------------
Q 027557 8 CPAVLSRNPIREIGDSLLNMKAITKLSLSNCQVQIIGSSLKSCTELKELRLAHNDIK----------------------- 64 (222)
Q Consensus 8 ~~L~L~~n~l~~lp~~~~~l~~L~~L~L~~n~i~~lp~~~~~l~~L~~L~l~~N~i~----------------------- 64 (222)
++||||+|.|+.+.+++.-.|.++.|++|+|.|..+.+ +..+++|+.|||++|.++
T Consensus 287 telDLS~N~I~~iDESvKL~Pkir~L~lS~N~i~~v~n-La~L~~L~~LDLS~N~Ls~~~Gwh~KLGNIKtL~La~N~iE 365 (490)
T KOG1259|consen 287 TELDLSGNLITQIDESVKLAPKLRRLILSQNRIRTVQN-LAELPQLQLLDLSGNLLAECVGWHLKLGNIKTLKLAQNKIE 365 (490)
T ss_pred hhccccccchhhhhhhhhhccceeEEeccccceeeehh-hhhcccceEeecccchhHhhhhhHhhhcCEeeeehhhhhHh
Confidence 45666666666666666666666666666666666552 555666666666666554
Q ss_pred cCchhhhCCCCCceeeccCCccCCCcchHhhcCCCCCCEEEeeCCCCCCchhHHHHHHHhCCccc---cccCCCCC
Q 027557 65 TLPAELAFNKKLQNLDLGKNLITRWSELKVLKSLVSLNNLNLQGNPVAEYDKLAKKVKNLLPSLH---IFNARPIN 137 (222)
Q Consensus 65 ~lp~~~~~l~~L~~L~L~~N~i~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~---~l~~~~~~ 137 (222)
++ .++..+.+|..||+++|+|..+..+..++.+|.|.++.|.+||+...++|+.++++.+..-- .||+.+..
T Consensus 366 ~L-SGL~KLYSLvnLDl~~N~Ie~ldeV~~IG~LPCLE~l~L~~NPl~~~vdYRTKVLa~FGERaSE~~LD~~~~~ 440 (490)
T KOG1259|consen 366 TL-SGLRKLYSLVNLDLSSNQIEELDEVNHIGNLPCLETLRLTGNPLAGSVDYRTKVLARFGERASEISLDNEPGN 440 (490)
T ss_pred hh-hhhHhhhhheeccccccchhhHHHhcccccccHHHHHhhcCCCccccchHHHHHHHHHhhhhhheecCCCCcc
Confidence 34 35677888999999999999999888999999999999999999999999998887664321 34554433
No 3
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]
Probab=99.64 E-value=2.9e-18 Score=125.16 Aligned_cols=122 Identities=24% Similarity=0.256 Sum_probs=93.5
Q ss_pred CccEEEeecCCCccchhhhcCCCCCcEEEcccCCCccccccccCCccCCEEecccCcCCcCchhhhCCCCCceeeccCCc
Q 027557 6 RDCPAVLSRNPIREIGDSLLNMKAITKLSLSNCQVQIIGSSLKSCTELKELRLAHNDIKTLPAELAFNKKLQNLDLGKNL 85 (222)
Q Consensus 6 ~~~~L~L~~n~l~~lp~~~~~l~~L~~L~L~~n~i~~lp~~~~~l~~L~~L~l~~N~i~~lp~~~~~l~~L~~L~L~~N~ 85 (222)
.++.|.||+|.++.+|+.+..+.+|+.|++++|+|+.+|.+++.+++|+.|+++.|++..+|.+|+.++.|+.|||..|.
T Consensus 34 ~ITrLtLSHNKl~~vppnia~l~nlevln~~nnqie~lp~~issl~klr~lnvgmnrl~~lprgfgs~p~levldltynn 113 (264)
T KOG0617|consen 34 NITRLTLSHNKLTVVPPNIAELKNLEVLNLSNNQIEELPTSISSLPKLRILNVGMNRLNILPRGFGSFPALEVLDLTYNN 113 (264)
T ss_pred hhhhhhcccCceeecCCcHHHhhhhhhhhcccchhhhcChhhhhchhhhheecchhhhhcCccccCCCchhhhhhccccc
Confidence 34788999999999999999999999999999999999988999999999999999999999899999999999998888
Q ss_pred cCCCcchHhhcCCCCCCEEEeeCCCCCCchhHHHHHHHhCCccccc
Q 027557 86 ITRWSELKVLKSLVSLNNLNLQGNPVAEYDKLAKKVKNLLPSLHIF 131 (222)
Q Consensus 86 i~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~l 131 (222)
+.+-.--+.|..|..|+.|+++.|.+.-+|+.. ..+.+|++|
T Consensus 114 l~e~~lpgnff~m~tlralyl~dndfe~lp~dv----g~lt~lqil 155 (264)
T KOG0617|consen 114 LNENSLPGNFFYMTTLRALYLGDNDFEILPPDV----GKLTNLQIL 155 (264)
T ss_pred cccccCCcchhHHHHHHHHHhcCCCcccCChhh----hhhcceeEE
Confidence 765211125555555555666666555555422 244555544
No 4
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]
Probab=99.60 E-value=4.7e-16 Score=115.95 Aligned_cols=142 Identities=25% Similarity=0.321 Sum_probs=125.6
Q ss_pred CCccEEEeecCCCccchhhhc-CCCCCcEEEcccCCCccccccccCCccCCEEecccCcCCcCchhhhC-CCCCceeecc
Q 027557 5 IRDCPAVLSRNPIREIGDSLL-NMKAITKLSLSNCQVQIIGSSLKSCTELKELRLAHNDIKTLPAELAF-NKKLQNLDLG 82 (222)
Q Consensus 5 ~~~~~L~L~~n~l~~lp~~~~-~l~~L~~L~L~~n~i~~lp~~~~~l~~L~~L~l~~N~i~~lp~~~~~-l~~L~~L~L~ 82 (222)
.+-+.++|.+..+..+.. ++ -......+||++|.|..++ .|.+++.|.+|.+.+|+|+.|.+.+.. +++|..|.|.
T Consensus 19 ~~e~e~~LR~lkip~ien-lg~~~d~~d~iDLtdNdl~~l~-~lp~l~rL~tLll~nNrIt~I~p~L~~~~p~l~~L~Lt 96 (233)
T KOG1644|consen 19 VRERELDLRGLKIPVIEN-LGATLDQFDAIDLTDNDLRKLD-NLPHLPRLHTLLLNNNRITRIDPDLDTFLPNLKTLILT 96 (233)
T ss_pred ccccccccccccccchhh-ccccccccceecccccchhhcc-cCCCccccceEEecCCcceeeccchhhhccccceEEec
Confidence 445788999999887743 33 3567889999999999988 799999999999999999999666554 5789999999
Q ss_pred CCccCCCcchHhhcCCCCCCEEEeeCCCCCCchhHHHHHHHhCCccccccCCCCChhhHhhhHHHH
Q 027557 83 KNLITRWSELKVLKSLVSLNNLNLQGNPVAEYDKLAKKVKNLLPSLHIFNARPINRITKNEKDNIV 148 (222)
Q Consensus 83 ~N~i~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~l~~~~~~~~~~~~~~~~~ 148 (222)
+|.|..+.++..+..||.|+.|.+-+||++.-..|+.+++..+|+|+.||...++..++..+..+.
T Consensus 97 nNsi~~l~dl~pLa~~p~L~~Ltll~Npv~~k~~YR~yvl~klp~l~~LDF~kVt~~ER~~A~~~f 162 (233)
T KOG1644|consen 97 NNSIQELGDLDPLASCPKLEYLTLLGNPVEHKKNYRLYVLYKLPSLRTLDFQKVTRKEREEAEVFF 162 (233)
T ss_pred CcchhhhhhcchhccCCccceeeecCCchhcccCceeEEEEecCcceEeehhhhhHHHHHHHHHHh
Confidence 999999998888999999999999999999999999999999999999999999999988887665
No 5
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]
Probab=99.56 E-value=2.1e-16 Score=115.53 Aligned_cols=120 Identities=23% Similarity=0.280 Sum_probs=106.1
Q ss_pred CccEEEeecCCCccchhhhcCCCCCcEEEcccCCCccccccccCCccCCEEecccCcCC--cCchhhhCCCCCceeeccC
Q 027557 6 RDCPAVLSRNPIREIGDSLLNMKAITKLSLSNCQVQIIGSSLKSCTELKELRLAHNDIK--TLPAELAFNKKLQNLDLGK 83 (222)
Q Consensus 6 ~~~~L~L~~n~l~~lp~~~~~l~~L~~L~L~~n~i~~lp~~~~~l~~L~~L~l~~N~i~--~lp~~~~~l~~L~~L~L~~ 83 (222)
++.+|++++|+|.++|.++..++.|+.|+++.|++..+|.+|+.++-|+.|||.+|.+. .+|..|..+..|+.|+|+.
T Consensus 57 nlevln~~nnqie~lp~~issl~klr~lnvgmnrl~~lprgfgs~p~levldltynnl~e~~lpgnff~m~tlralyl~d 136 (264)
T KOG0617|consen 57 NLEVLNLSNNQIEELPTSISSLPKLRILNVGMNRLNILPRGFGSFPALEVLDLTYNNLNENSLPGNFFYMTTLRALYLGD 136 (264)
T ss_pred hhhhhhcccchhhhcChhhhhchhhhheecchhhhhcCccccCCCchhhhhhccccccccccCCcchhHHHHHHHHHhcC
Confidence 45789999999999999999999999999999999999999999999999999999988 6888899999999999999
Q ss_pred CccCCCcchHhhcCCCCCCEEEeeCCCCCCchhHHHHHHHhCCccccc
Q 027557 84 NLITRWSELKVLKSLVSLNNLNLQGNPVAEYDKLAKKVKNLLPSLHIF 131 (222)
Q Consensus 84 N~i~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~l 131 (222)
|.+.-+|+ .++++++|+.|.+..|.+-.+|.... .+..|+.|
T Consensus 137 ndfe~lp~--dvg~lt~lqil~lrdndll~lpkeig----~lt~lrel 178 (264)
T KOG0617|consen 137 NDFEILPP--DVGKLTNLQILSLRDNDLLSLPKEIG----DLTRLREL 178 (264)
T ss_pred CCcccCCh--hhhhhcceeEEeeccCchhhCcHHHH----HHHHHHHH
Confidence 99999987 89999999999999999888886544 34444444
No 6
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=99.55 E-value=4.1e-16 Score=132.25 Aligned_cols=131 Identities=28% Similarity=0.363 Sum_probs=102.2
Q ss_pred ccCCCc-cEEEeecCCCccc-hhhhcCCCCCcEEEcccCCCcccccc-ccCCccCCEEecccCcCCcCchh-hhCCCCCc
Q 027557 2 LFGIRD-CPAVLSRNPIREI-GDSLLNMKAITKLSLSNCQVQIIGSS-LKSCTELKELRLAHNDIKTLPAE-LAFNKKLQ 77 (222)
Q Consensus 2 ~~~~~~-~~L~L~~n~l~~l-p~~~~~l~~L~~L~L~~n~i~~lp~~-~~~l~~L~~L~l~~N~i~~lp~~-~~~l~~L~ 77 (222)
+||++- +.|+||+|.|..| ++++...+.|+.|+|++|+|+.++++ |..|..|++|+|++|+|+.+-++ |..+.+|+
T Consensus 289 lfgLt~L~~L~lS~NaI~rih~d~WsftqkL~~LdLs~N~i~~l~~~sf~~L~~Le~LnLs~Nsi~~l~e~af~~lssL~ 368 (873)
T KOG4194|consen 289 LFGLTSLEQLDLSYNAIQRIHIDSWSFTQKLKELDLSSNRITRLDEGSFRVLSQLEELNLSHNSIDHLAEGAFVGLSSLH 368 (873)
T ss_pred ccccchhhhhccchhhhheeecchhhhcccceeEeccccccccCChhHHHHHHHhhhhcccccchHHHHhhHHHHhhhhh
Confidence 567765 7889999999887 46788888999999999999998876 88888888888888888877444 77888888
Q ss_pred eeeccCCccCCCcc--hHhhcCCCCCCEEEeeCCCCCCchhHHHHHHHhCCccccccCCC
Q 027557 78 NLDLGKNLITRWSE--LKVLKSLVSLNNLNLQGNPVAEYDKLAKKVKNLLPSLHIFNARP 135 (222)
Q Consensus 78 ~L~L~~N~i~~~~~--~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~l~~~~ 135 (222)
.|||++|.|+..-+ -..|.+|++|+.|.+.||++..++. +.+..++.|+.||...
T Consensus 369 ~LdLr~N~ls~~IEDaa~~f~gl~~LrkL~l~gNqlk~I~k---rAfsgl~~LE~LdL~~ 425 (873)
T KOG4194|consen 369 KLDLRSNELSWCIEDAAVAFNGLPSLRKLRLTGNQLKSIPK---RAFSGLEALEHLDLGD 425 (873)
T ss_pred hhcCcCCeEEEEEecchhhhccchhhhheeecCceeeecch---hhhccCcccceecCCC
Confidence 88888887755321 1457788888888888888888764 2456788888876643
No 7
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=99.53 E-value=1.5e-15 Score=130.04 Aligned_cols=126 Identities=25% Similarity=0.275 Sum_probs=101.8
Q ss_pred ccEEEeecCCCccchhhhcCCCCCcEEEcccCCCcccccc-ccCCccCCEEecccCcCCcCchhhhCCCCCceeeccCCc
Q 027557 7 DCPAVLSRNPIREIGDSLLNMKAITKLSLSNCQVQIIGSS-LKSCTELKELRLAHNDIKTLPAELAFNKKLQNLDLGKNL 85 (222)
Q Consensus 7 ~~~L~L~~n~l~~lp~~~~~l~~L~~L~L~~n~i~~lp~~-~~~l~~L~~L~l~~N~i~~lp~~~~~l~~L~~L~L~~N~ 85 (222)
+++||||+|+++++|..+....++-+|+||+|+|..||.. |-+++.|-+||||+|++..+|+.+..+..|++|.|++|.
T Consensus 105 Lt~lDLShNqL~EvP~~LE~AKn~iVLNLS~N~IetIPn~lfinLtDLLfLDLS~NrLe~LPPQ~RRL~~LqtL~Ls~NP 184 (1255)
T KOG0444|consen 105 LTILDLSHNQLREVPTNLEYAKNSIVLNLSYNNIETIPNSLFINLTDLLFLDLSNNRLEMLPPQIRRLSMLQTLKLSNNP 184 (1255)
T ss_pred ceeeecchhhhhhcchhhhhhcCcEEEEcccCccccCCchHHHhhHhHhhhccccchhhhcCHHHHHHhhhhhhhcCCCh
Confidence 5789999999999999999999999999999999999988 788999999999999999999999999999999999985
Q ss_pred cCC-----Ccch-------------------HhhcCCCCCCEEEeeCCCCCCchhHHHHHHHhCCccccccCCCC
Q 027557 86 ITR-----WSEL-------------------KVLKSLVSLNNLNLQGNPVAEYDKLAKKVKNLLPSLHIFNARPI 136 (222)
Q Consensus 86 i~~-----~~~~-------------------~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~l~~~~~ 136 (222)
+.. +|.+ ..+..+.+|..++++.|.+...|.. +..+++|+.|+.+..
T Consensus 185 L~hfQLrQLPsmtsL~vLhms~TqRTl~N~Ptsld~l~NL~dvDlS~N~Lp~vPec----ly~l~~LrrLNLS~N 255 (1255)
T KOG0444|consen 185 LNHFQLRQLPSMTSLSVLHMSNTQRTLDNIPTSLDDLHNLRDVDLSENNLPIVPEC----LYKLRNLRRLNLSGN 255 (1255)
T ss_pred hhHHHHhcCccchhhhhhhcccccchhhcCCCchhhhhhhhhccccccCCCcchHH----HhhhhhhheeccCcC
Confidence 532 2221 1355667788888888888877763 336777776665543
No 8
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=99.48 E-value=5.2e-15 Score=126.84 Aligned_cols=118 Identities=25% Similarity=0.385 Sum_probs=102.1
Q ss_pred CccEEEeecCCCc--cchhhhcCCCCCcEEEcccCCCccccccccCCccCCEEecccCcCCcCchh-hhCCCCCceeecc
Q 027557 6 RDCPAVLSRNPIR--EIGDSLLNMKAITKLSLSNCQVQIIGSSLKSCTELKELRLAHNDIKTLPAE-LAFNKKLQNLDLG 82 (222)
Q Consensus 6 ~~~~L~L~~n~l~--~lp~~~~~l~~L~~L~L~~n~i~~lp~~~~~l~~L~~L~l~~N~i~~lp~~-~~~l~~L~~L~L~ 82 (222)
++|.+++..|++. .||+.+..+..|+.||||+|+++.+|..+....++-+|+||+|+|.+||.. |-++..|-+|||+
T Consensus 79 ~LRsv~~R~N~LKnsGiP~diF~l~dLt~lDLShNqL~EvP~~LE~AKn~iVLNLS~N~IetIPn~lfinLtDLLfLDLS 158 (1255)
T KOG0444|consen 79 RLRSVIVRDNNLKNSGIPTDIFRLKDLTILDLSHNQLREVPTNLEYAKNSIVLNLSYNNIETIPNSLFINLTDLLFLDLS 158 (1255)
T ss_pred hhHHHhhhccccccCCCCchhcccccceeeecchhhhhhcchhhhhhcCcEEEEcccCccccCCchHHHhhHhHhhhccc
Confidence 3577888899987 588899999999999999999999998899999999999999999999987 6788999999999
Q ss_pred CCccCCCcchHhhcCCCCCCEEEeeCCCCCCchhHHHHHHHhCCccccc
Q 027557 83 KNLITRWSELKVLKSLVSLNNLNLQGNPVAEYDKLAKKVKNLLPSLHIF 131 (222)
Q Consensus 83 ~N~i~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~l 131 (222)
+|++..+|+ .++++..|+.|.|++||+.-+ .+..+|+++.|
T Consensus 159 ~NrLe~LPP--Q~RRL~~LqtL~Ls~NPL~hf------QLrQLPsmtsL 199 (1255)
T KOG0444|consen 159 NNRLEMLPP--QIRRLSMLQTLKLSNNPLNHF------QLRQLPSMTSL 199 (1255)
T ss_pred cchhhhcCH--HHHHHhhhhhhhcCCChhhHH------HHhcCccchhh
Confidence 999999998 889999999999999998654 33456665544
No 9
>KOG0472 consensus Leucine-rich repeat protein [Function unknown]
Probab=99.44 E-value=2e-14 Score=117.33 Aligned_cols=101 Identities=31% Similarity=0.419 Sum_probs=64.6
Q ss_pred EEeecCCCccchhhhcCCCCCcEEEcccCCCccccccccCCccCCEEecccCcCCcCchh--------------------
Q 027557 10 AVLSRNPIREIGDSLLNMKAITKLSLSNCQVQIIGSSLKSCTELKELRLAHNDIKTLPAE-------------------- 69 (222)
Q Consensus 10 L~L~~n~l~~lp~~~~~l~~L~~L~L~~n~i~~lp~~~~~l~~L~~L~l~~N~i~~lp~~-------------------- 69 (222)
+++++|.+..+|..++.+++|..|+|++|.+..+|..++.+..|+.|+++.|++..+|..
T Consensus 417 l~lsnn~isfv~~~l~~l~kLt~L~L~NN~Ln~LP~e~~~lv~Lq~LnlS~NrFr~lP~~~y~lq~lEtllas~nqi~~v 496 (565)
T KOG0472|consen 417 LVLSNNKISFVPLELSQLQKLTFLDLSNNLLNDLPEEMGSLVRLQTLNLSFNRFRMLPECLYELQTLETLLASNNQIGSV 496 (565)
T ss_pred HHhhcCccccchHHHHhhhcceeeecccchhhhcchhhhhhhhhheecccccccccchHHHhhHHHHHHHHhcccccccc
Confidence 456666666666666666666666666666666666666666666666666666555533
Q ss_pred ----hhCCCCCceeeccCCccCCCcchHhhcCCCCCCEEEeeCCCCC
Q 027557 70 ----LAFNKKLQNLDLGKNLITRWSELKVLKSLVSLNNLNLQGNPVA 112 (222)
Q Consensus 70 ----~~~l~~L~~L~L~~N~i~~~~~~~~~~~l~~L~~L~l~~N~l~ 112 (222)
+..|.+|.+|||.+|.|..+|+ .+++|.+|++|.+.||||.
T Consensus 497 d~~~l~nm~nL~tLDL~nNdlq~IPp--~LgnmtnL~hLeL~gNpfr 541 (565)
T KOG0472|consen 497 DPSGLKNMRNLTTLDLQNNDLQQIPP--ILGNMTNLRHLELDGNPFR 541 (565)
T ss_pred ChHHhhhhhhcceeccCCCchhhCCh--hhccccceeEEEecCCccC
Confidence 5556666666666666666665 5666666666666666666
No 10
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=99.42 E-value=1e-13 Score=118.02 Aligned_cols=127 Identities=23% Similarity=0.298 Sum_probs=81.0
Q ss_pred CCccEEEeecCCCccch-hhhcCCCCCcEEEcccCCCccccccccCCccCCEEecccCcCCcC-----------------
Q 027557 5 IRDCPAVLSRNPIREIG-DSLLNMKAITKLSLSNCQVQIIGSSLKSCTELKELRLAHNDIKTL----------------- 66 (222)
Q Consensus 5 ~~~~~L~L~~n~l~~lp-~~~~~l~~L~~L~L~~n~i~~lp~~~~~l~~L~~L~l~~N~i~~l----------------- 66 (222)
..+++|+|++|.|+.+. ..|.++++|+.+++.+|.++.||.......+|+.|+|.+|.|+++
T Consensus 78 ~~t~~LdlsnNkl~~id~~~f~nl~nLq~v~l~~N~Lt~IP~f~~~sghl~~L~L~~N~I~sv~se~L~~l~alrslDLS 157 (873)
T KOG4194|consen 78 SQTQTLDLSNNKLSHIDFEFFYNLPNLQEVNLNKNELTRIPRFGHESGHLEKLDLRHNLISSVTSEELSALPALRSLDLS 157 (873)
T ss_pred cceeeeeccccccccCcHHHHhcCCcceeeeeccchhhhcccccccccceeEEeeeccccccccHHHHHhHhhhhhhhhh
Confidence 34467888888888774 467788888888888888888884433334455555555555443
Q ss_pred -------ch-hhhCCCCCceeeccCCccCCCcchHhhcCCCCCCEEEeeCCCCCCchhHHHHHHHhCCccccccCCC
Q 027557 67 -------PA-ELAFNKKLQNLDLGKNLITRWSELKVLKSLVSLNNLNLQGNPVAEYDKLAKKVKNLLPSLHIFNARP 135 (222)
Q Consensus 67 -------p~-~~~~l~~L~~L~L~~N~i~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~l~~~~ 135 (222)
|. .|..-.++++|+|++|+|+++.. +.|..+.+|..|.|+.|.++.+|.. +++.+|+|+.|+...
T Consensus 158 rN~is~i~~~sfp~~~ni~~L~La~N~It~l~~-~~F~~lnsL~tlkLsrNrittLp~r---~Fk~L~~L~~LdLnr 230 (873)
T KOG4194|consen 158 RNLISEIPKPSFPAKVNIKKLNLASNRITTLET-GHFDSLNSLLTLKLSRNRITTLPQR---SFKRLPKLESLDLNR 230 (873)
T ss_pred hchhhcccCCCCCCCCCceEEeecccccccccc-ccccccchheeeecccCcccccCHH---Hhhhcchhhhhhccc
Confidence 22 13333455666666666666554 5566666677777777777776643 455678887776653
No 11
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=99.41 E-value=6.4e-13 Score=124.21 Aligned_cols=105 Identities=30% Similarity=0.286 Sum_probs=59.9
Q ss_pred ccEEEeecCCCc-cchhhhcCCCCCcEEEcccCCCcc-ccccccCCccCCEEecccCcCC-cCchhhhCCCCCceeeccC
Q 027557 7 DCPAVLSRNPIR-EIGDSLLNMKAITKLSLSNCQVQI-IGSSLKSCTELKELRLAHNDIK-TLPAELAFNKKLQNLDLGK 83 (222)
Q Consensus 7 ~~~L~L~~n~l~-~lp~~~~~l~~L~~L~L~~n~i~~-lp~~~~~l~~L~~L~l~~N~i~-~lp~~~~~l~~L~~L~L~~ 83 (222)
+++|+|++|.+. .+|..+..+++|++|+|++|.+.. +|..+..+++|++|++++|.+. .+|..+..+++|++|+|++
T Consensus 142 L~~L~Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~ 221 (968)
T PLN00113 142 LETLDLSNNMLSGEIPNDIGSFSSLKVLDLGGNVLVGKIPNSLTNLTSLEFLTLASNQLVGQIPRELGQMKSLKWIYLGY 221 (968)
T ss_pred CCEEECcCCcccccCChHHhcCCCCCEEECccCcccccCChhhhhCcCCCeeeccCCCCcCcCChHHcCcCCccEEECcC
Confidence 345555555554 445556666666666666666553 5545666666666666666655 4455566666666666666
Q ss_pred CccCCCcchHhhcCCCCCCEEEeeCCCCC
Q 027557 84 NLITRWSELKVLKSLVSLNNLNLQGNPVA 112 (222)
Q Consensus 84 N~i~~~~~~~~~~~l~~L~~L~l~~N~l~ 112 (222)
|.+.+..+ ..++.+++|++|++++|.+.
T Consensus 222 n~l~~~~p-~~l~~l~~L~~L~L~~n~l~ 249 (968)
T PLN00113 222 NNLSGEIP-YEIGGLTSLNHLDLVYNNLT 249 (968)
T ss_pred CccCCcCC-hhHhcCCCCCEEECcCceec
Confidence 65553222 24555555666665555554
No 12
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=99.41 E-value=1.2e-13 Score=103.17 Aligned_cols=120 Identities=31% Similarity=0.429 Sum_probs=40.6
Q ss_pred EeecCCCccchhhhcCCCCCcEEEcccCCCcccccccc-CCccCCEEecccCcCCcCchhhhCCCCCceeeccCCccCCC
Q 027557 11 VLSRNPIREIGDSLLNMKAITKLSLSNCQVQIIGSSLK-SCTELKELRLAHNDIKTLPAELAFNKKLQNLDLGKNLITRW 89 (222)
Q Consensus 11 ~L~~n~l~~lp~~~~~l~~L~~L~L~~n~i~~lp~~~~-~l~~L~~L~l~~N~i~~lp~~~~~l~~L~~L~L~~N~i~~~ 89 (222)
.|+.+.|..++ .+.+...++.|+|++|.|+.+. .+. .+.+|+.|++++|.|+.+ +++..++.|+.|++++|+|+++
T Consensus 3 ~lt~~~i~~~~-~~~n~~~~~~L~L~~n~I~~Ie-~L~~~l~~L~~L~Ls~N~I~~l-~~l~~L~~L~~L~L~~N~I~~i 79 (175)
T PF14580_consen 3 RLTANMIEQIA-QYNNPVKLRELNLRGNQISTIE-NLGATLDKLEVLDLSNNQITKL-EGLPGLPRLKTLDLSNNRISSI 79 (175)
T ss_dssp -----------------------------------S--TT-TT--EEE-TTS--S---TT----TT--EEE--SS---S-
T ss_pred ccccccccccc-cccccccccccccccccccccc-chhhhhcCCCEEECCCCCCccc-cCccChhhhhhcccCCCCCCcc
Confidence 46677777774 3456668999999999999987 565 689999999999999999 4788999999999999999998
Q ss_pred cchHhh-cCCCCCCEEEeeCCCCCCchhHHHHHHHhCCccccccC--CCCC
Q 027557 90 SELKVL-KSLVSLNNLNLQGNPVAEYDKLAKKVKNLLPSLHIFNA--RPIN 137 (222)
Q Consensus 90 ~~~~~~-~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~l~~--~~~~ 137 (222)
.+ .+ ..+++|++|++++|.|..+.... .++.+|+|+.|+. +|++
T Consensus 80 ~~--~l~~~lp~L~~L~L~~N~I~~l~~l~--~L~~l~~L~~L~L~~NPv~ 126 (175)
T PF14580_consen 80 SE--GLDKNLPNLQELYLSNNKISDLNELE--PLSSLPKLRVLSLEGNPVC 126 (175)
T ss_dssp CH--HHHHH-TT--EEE-TTS---SCCCCG--GGGG-TT--EEE-TT-GGG
T ss_pred cc--chHHhCCcCCEEECcCCcCCChHHhH--HHHcCCCcceeeccCCccc
Confidence 75 34 46999999999999998876531 2357888887755 4444
No 13
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=99.40 E-value=3.5e-14 Score=112.27 Aligned_cols=89 Identities=29% Similarity=0.342 Sum_probs=69.7
Q ss_pred hcCCCCCcEEEcccCCCccccccccCCccCCEEecccCcCCcCchhhhCCCCCceeeccCCccCCCcchHhhcCCCCCCE
Q 027557 24 LLNMKAITKLSLSNCQVQIIGSSLKSCTELKELRLAHNDIKTLPAELAFNKKLQNLDLGKNLITRWSELKVLKSLVSLNN 103 (222)
Q Consensus 24 ~~~l~~L~~L~L~~n~i~~lp~~~~~l~~L~~L~l~~N~i~~lp~~~~~l~~L~~L~L~~N~i~~~~~~~~~~~l~~L~~ 103 (222)
+..+..|+.||||+|.|+.+..++.-+|.++.|++++|.|..+ .++..+++|+.|||++|.++.+.. .-..+.+.+.
T Consensus 280 ~dTWq~LtelDLS~N~I~~iDESvKL~Pkir~L~lS~N~i~~v-~nLa~L~~L~~LDLS~N~Ls~~~G--wh~KLGNIKt 356 (490)
T KOG1259|consen 280 ADTWQELTELDLSGNLITQIDESVKLAPKLRRLILSQNRIRTV-QNLAELPQLQLLDLSGNLLAECVG--WHLKLGNIKT 356 (490)
T ss_pred cchHhhhhhccccccchhhhhhhhhhccceeEEeccccceeee-hhhhhcccceEeecccchhHhhhh--hHhhhcCEee
Confidence 3456789999999999999998899999999999999999999 469999999999999998876543 2233444455
Q ss_pred EEeeCCCCCCch
Q 027557 104 LNLQGNPVAEYD 115 (222)
Q Consensus 104 L~l~~N~l~~~~ 115 (222)
|.|++|.|..+.
T Consensus 357 L~La~N~iE~LS 368 (490)
T KOG1259|consen 357 LKLAQNKIETLS 368 (490)
T ss_pred eehhhhhHhhhh
Confidence 555555444443
No 14
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=99.39 E-value=1.1e-12 Score=122.59 Aligned_cols=107 Identities=27% Similarity=0.233 Sum_probs=79.1
Q ss_pred CccEEEeecCCCc-cchhhhcCCCCCcEEEcccCCCcc-ccccccCCccCCEEecccCcCC-cCchhhhCCCCCceeecc
Q 027557 6 RDCPAVLSRNPIR-EIGDSLLNMKAITKLSLSNCQVQI-IGSSLKSCTELKELRLAHNDIK-TLPAELAFNKKLQNLDLG 82 (222)
Q Consensus 6 ~~~~L~L~~n~l~-~lp~~~~~l~~L~~L~L~~n~i~~-lp~~~~~l~~L~~L~l~~N~i~-~lp~~~~~l~~L~~L~L~ 82 (222)
.+++|+|++|.+. .+|..+.++++|++|+|++|.++. +|..+..+++|++|++++|.++ .+|..+..+++|++|+++
T Consensus 165 ~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~ 244 (968)
T PLN00113 165 SLKVLDLGGNVLVGKIPNSLTNLTSLEFLTLASNQLVGQIPRELGQMKSLKWIYLGYNNLSGEIPYEIGGLTSLNHLDLV 244 (968)
T ss_pred CCCEEECccCcccccCChhhhhCcCCCeeeccCCCCcCcCChHHcCcCCccEEECcCCccCCcCChhHhcCCCCCEEECc
Confidence 4578888888876 567777888888888888888775 6666777888888888888777 567777777788888888
Q ss_pred CCccCCCcchHhhcCCCCCCEEEeeCCCCCC
Q 027557 83 KNLITRWSELKVLKSLVSLNNLNLQGNPVAE 113 (222)
Q Consensus 83 ~N~i~~~~~~~~~~~l~~L~~L~l~~N~l~~ 113 (222)
+|.+.+..+ ..++.+++|+.|++++|.+..
T Consensus 245 ~n~l~~~~p-~~l~~l~~L~~L~L~~n~l~~ 274 (968)
T PLN00113 245 YNNLTGPIP-SSLGNLKNLQYLFLYQNKLSG 274 (968)
T ss_pred CceeccccC-hhHhCCCCCCEEECcCCeeec
Confidence 777764332 367777777777777776654
No 15
>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]
Probab=99.38 E-value=8e-14 Score=118.10 Aligned_cols=130 Identities=21% Similarity=0.287 Sum_probs=113.5
Q ss_pred ccCCCccEEEeecCCCccchhhhcCCCCCcEEEcccCCCccccccccCCccCCEEecccCcCCcCchhhhCCCCCceeec
Q 027557 2 LFGIRDCPAVLSRNPIREIGDSLLNMKAITKLSLSNCQVQIIGSSLKSCTELKELRLAHNDIKTLPAELAFNKKLQNLDL 81 (222)
Q Consensus 2 ~~~~~~~~L~L~~n~l~~lp~~~~~l~~L~~L~L~~n~i~~lp~~~~~l~~L~~L~l~~N~i~~lp~~~~~l~~L~~L~L 81 (222)
+|.+.+++|.+++|+++.+|+.++.+..|..||.+.|.|..+|+.++.+..|+.|.+.+|++..+|..+.. -.|..||+
T Consensus 140 lC~lpLkvli~sNNkl~~lp~~ig~~~tl~~ld~s~nei~slpsql~~l~slr~l~vrRn~l~~lp~El~~-LpLi~lDf 218 (722)
T KOG0532|consen 140 LCDLPLKVLIVSNNKLTSLPEEIGLLPTLAHLDVSKNEIQSLPSQLGYLTSLRDLNVRRNHLEDLPEELCS-LPLIRLDF 218 (722)
T ss_pred hhcCcceeEEEecCccccCCcccccchhHHHhhhhhhhhhhchHHhhhHHHHHHHHHhhhhhhhCCHHHhC-Cceeeeec
Confidence 57888999999999999999999999999999999999999998899999999999999999999998884 46999999
Q ss_pred cCCccCCCcchHhhcCCCCCCEEEeeCCCCCCchhHHHHHHHhCCccccccCCC
Q 027557 82 GKNLITRWSELKVLKSLVSLNNLNLQGNPVAEYDKLAKKVKNLLPSLHIFNARP 135 (222)
Q Consensus 82 ~~N~i~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~l~~~~ 135 (222)
+.|+|..+|. .|..|..|++|-|.+||++.-|..+ .+.+.+.-.++|+...
T Consensus 219 ScNkis~iPv--~fr~m~~Lq~l~LenNPLqSPPAqI-C~kGkVHIFKyL~~qA 269 (722)
T KOG0532|consen 219 SCNKISYLPV--DFRKMRHLQVLQLENNPLQSPPAQI-CEKGKVHIFKYLSTQA 269 (722)
T ss_pred ccCceeecch--hhhhhhhheeeeeccCCCCCChHHH-Hhccceeeeeeecchh
Confidence 9999999997 8999999999999999999966532 2444555556665543
No 16
>KOG0472 consensus Leucine-rich repeat protein [Function unknown]
Probab=99.36 E-value=8.1e-14 Score=113.87 Aligned_cols=127 Identities=25% Similarity=0.367 Sum_probs=105.9
Q ss_pred ccEEEeecCCCccchhhhcCCCCCcE-EEcccCCCccccccccCCccCCEEecccCcCCcCchhhhCCCCCceeeccCCc
Q 027557 7 DCPAVLSRNPIREIGDSLLNMKAITK-LSLSNCQVQIIGSSLKSCTELKELRLAHNDIKTLPAELAFNKKLQNLDLGKNL 85 (222)
Q Consensus 7 ~~~L~L~~n~l~~lp~~~~~l~~L~~-L~L~~n~i~~lp~~~~~l~~L~~L~l~~N~i~~lp~~~~~l~~L~~L~L~~N~ 85 (222)
++..+++.|++.++|..+..+..+.+ +.+++|.+..+|..+..+++|..|+|++|.+.++|..++.+..|+.|+++.|+
T Consensus 390 Vt~VnfskNqL~elPk~L~~lkelvT~l~lsnn~isfv~~~l~~l~kLt~L~L~NN~Ln~LP~e~~~lv~Lq~LnlS~Nr 469 (565)
T KOG0472|consen 390 VTSVNFSKNQLCELPKRLVELKELVTDLVLSNNKISFVPLELSQLQKLTFLDLSNNLLNDLPEEMGSLVRLQTLNLSFNR 469 (565)
T ss_pred eEEEecccchHhhhhhhhHHHHHHHHHHHhhcCccccchHHHHhhhcceeeecccchhhhcchhhhhhhhhheecccccc
Confidence 47899999999999988877665544 67888888888877999999999999999999999999999999999999987
Q ss_pred cCCCcch----------------------HhhcCCCCCCEEEeeCCCCCCchhHHHHHHHhCCccccc--cCCCCC
Q 027557 86 ITRWSEL----------------------KVLKSLVSLNNLNLQGNPVAEYDKLAKKVKNLLPSLHIF--NARPIN 137 (222)
Q Consensus 86 i~~~~~~----------------------~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~l--~~~~~~ 137 (222)
+..+|.+ ..+..|.+|..|++.+|.+..+|+ .++.+.+|+.| +++++.
T Consensus 470 Fr~lP~~~y~lq~lEtllas~nqi~~vd~~~l~nm~nL~tLDL~nNdlq~IPp----~LgnmtnL~hLeL~gNpfr 541 (565)
T KOG0472|consen 470 FRMLPECLYELQTLETLLASNNQIGSVDPSGLKNMRNLTTLDLQNNDLQQIPP----ILGNMTNLRHLELDGNPFR 541 (565)
T ss_pred cccchHHHhhHHHHHHHHhccccccccChHHhhhhhhcceeccCCCchhhCCh----hhccccceeEEEecCCccC
Confidence 7665532 236788899999999999999987 45688888876 445554
No 17
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=99.28 E-value=3.7e-13 Score=119.48 Aligned_cols=107 Identities=23% Similarity=0.278 Sum_probs=75.0
Q ss_pred CccEEEeecCCCccchh-hhcCCCCCcEEEcccCCCccccccccCCccCCEEecccCcCCcCchhhhCCCCCceeeccCC
Q 027557 6 RDCPAVLSRNPIREIGD-SLLNMKAITKLSLSNCQVQIIGSSLKSCTELKELRLAHNDIKTLPAELAFNKKLQNLDLGKN 84 (222)
Q Consensus 6 ~~~~L~L~~n~l~~lp~-~~~~l~~L~~L~L~~n~i~~lp~~~~~l~~L~~L~l~~N~i~~lp~~~~~l~~L~~L~L~~N 84 (222)
.+++|+|++|.|..+|+ .+.++..|+.|+||+|.++.+|..+..++.|++|...+|++..+| .+..++.|+++|++.|
T Consensus 384 hLKVLhLsyNrL~~fpas~~~kle~LeeL~LSGNkL~~Lp~tva~~~~L~tL~ahsN~l~~fP-e~~~l~qL~~lDlS~N 462 (1081)
T KOG0618|consen 384 HLKVLHLSYNRLNSFPASKLRKLEELEELNLSGNKLTTLPDTVANLGRLHTLRAHSNQLLSFP-ELAQLPQLKVLDLSCN 462 (1081)
T ss_pred ceeeeeecccccccCCHHHHhchHHhHHHhcccchhhhhhHHHHhhhhhHHHhhcCCceeech-hhhhcCcceEEecccc
Confidence 45677777777777775 456777777777777777777766777777777777777777776 6777777888888888
Q ss_pred ccCCCcchHhhcCCCCCCEEEeeCCCCCCc
Q 027557 85 LITRWSELKVLKSLVSLNNLNLQGNPVAEY 114 (222)
Q Consensus 85 ~i~~~~~~~~~~~l~~L~~L~l~~N~l~~~ 114 (222)
.|+.+.- ..-..-++|++|+++||....+
T Consensus 463 ~L~~~~l-~~~~p~p~LkyLdlSGN~~l~~ 491 (1081)
T KOG0618|consen 463 NLSEVTL-PEALPSPNLKYLDLSGNTRLVF 491 (1081)
T ss_pred hhhhhhh-hhhCCCcccceeeccCCccccc
Confidence 7776542 1112226788888888875443
No 18
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]
Probab=99.27 E-value=2.2e-13 Score=118.42 Aligned_cols=117 Identities=31% Similarity=0.342 Sum_probs=100.4
Q ss_pred ccEEEeecCCCccchhhhcCCCCCcEEEcccCCCcccccc-ccCCccCCEEecccCcCCcCchhhhCCCCCceeeccCCc
Q 027557 7 DCPAVLSRNPIREIGDSLLNMKAITKLSLSNCQVQIIGSS-LKSCTELKELRLAHNDIKTLPAELAFNKKLQNLDLGKNL 85 (222)
Q Consensus 7 ~~~L~L~~n~l~~lp~~~~~l~~L~~L~L~~n~i~~lp~~-~~~l~~L~~L~l~~N~i~~lp~~~~~l~~L~~L~L~~N~ 85 (222)
++.|+|++|+++.+ +.+..++.|+.|||++|+++.+|.- ...+ .|+.|.+++|.++++ -++.++.+|+.|||+.|.
T Consensus 189 le~LnLshNk~~~v-~~Lr~l~~LkhLDlsyN~L~~vp~l~~~gc-~L~~L~lrnN~l~tL-~gie~LksL~~LDlsyNl 265 (1096)
T KOG1859|consen 189 LESLNLSHNKFTKV-DNLRRLPKLKHLDLSYNCLRHVPQLSMVGC-KLQLLNLRNNALTTL-RGIENLKSLYGLDLSYNL 265 (1096)
T ss_pred hhhhccchhhhhhh-HHHHhcccccccccccchhccccccchhhh-hheeeeecccHHHhh-hhHHhhhhhhccchhHhh
Confidence 36789999999988 4888999999999999999998853 2233 499999999999988 578899999999999999
Q ss_pred cCCCcchHhhcCCCCCCEEEeeCCCCCCchhHHHHHHHhCC
Q 027557 86 ITRWSELKVLKSLVSLNNLNLQGNPVAEYDKLAKKVKNLLP 126 (222)
Q Consensus 86 i~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~ 126 (222)
|.+..++..+..+..|+.|+|.|||+.|-|.++..+...+.
T Consensus 266 l~~hseL~pLwsLs~L~~L~LeGNPl~c~p~hRaataqYl~ 306 (1096)
T KOG1859|consen 266 LSEHSELEPLWSLSSLIVLWLEGNPLCCAPWHRAATAQYLH 306 (1096)
T ss_pred hhcchhhhHHHHHHHHHHHhhcCCccccCHHHHHHHHhHhc
Confidence 99988888888999999999999999999988887666554
No 19
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=99.27 E-value=1e-12 Score=116.77 Aligned_cols=124 Identities=27% Similarity=0.345 Sum_probs=107.1
Q ss_pred CccEEEeecCCCcc-chhhhcCCCCCcEEEcccCCCcccccc-ccCCccCCEEecccCcCCcCchhhhCCCCCceeeccC
Q 027557 6 RDCPAVLSRNPIRE-IGDSLLNMKAITKLSLSNCQVQIIGSS-LKSCTELKELRLAHNDIKTLPAELAFNKKLQNLDLGK 83 (222)
Q Consensus 6 ~~~~L~L~~n~l~~-lp~~~~~l~~L~~L~L~~n~i~~lp~~-~~~l~~L~~L~l~~N~i~~lp~~~~~l~~L~~L~L~~ 83 (222)
.+..|+|.+|.++. .-+.+.++.+|+.|+|++|+|..+|.. +..+..|+.|+||+|+++.+|..+..+..|++|...+
T Consensus 360 ~Lq~LylanN~Ltd~c~p~l~~~~hLKVLhLsyNrL~~fpas~~~kle~LeeL~LSGNkL~~Lp~tva~~~~L~tL~ahs 439 (1081)
T KOG0618|consen 360 ALQELYLANNHLTDSCFPVLVNFKHLKVLHLSYNRLNSFPASKLRKLEELEELNLSGNKLTTLPDTVANLGRLHTLRAHS 439 (1081)
T ss_pred HHHHHHHhcCcccccchhhhccccceeeeeecccccccCCHHHHhchHHhHHHhcccchhhhhhHHHHhhhhhHHHhhcC
Confidence 34678999999993 335788999999999999999999987 8999999999999999999999999999999999999
Q ss_pred CccCCCcchHhhcCCCCCCEEEeeCCCCCCchhHHHHHHHhC--CccccccCCCCC
Q 027557 84 NLITRWSELKVLKSLVSLNNLNLQGNPVAEYDKLAKKVKNLL--PSLHIFNARPIN 137 (222)
Q Consensus 84 N~i~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l--~~L~~l~~~~~~ 137 (222)
|+|..+|+ +..++.|+.+|++.|.+.... +...+ |+|++||.....
T Consensus 440 N~l~~fPe---~~~l~qL~~lDlS~N~L~~~~-----l~~~~p~p~LkyLdlSGN~ 487 (1081)
T KOG0618|consen 440 NQLLSFPE---LAQLPQLKVLDLSCNNLSEVT-----LPEALPSPNLKYLDLSGNT 487 (1081)
T ss_pred Cceeechh---hhhcCcceEEecccchhhhhh-----hhhhCCCcccceeeccCCc
Confidence 99999985 899999999999999987753 11233 688888776544
No 20
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]
Probab=99.27 E-value=3.4e-13 Score=109.92 Aligned_cols=108 Identities=27% Similarity=0.320 Sum_probs=74.2
Q ss_pred ccEEEeecCCCccchh-hhcCCCCCcEEEcccCCCcccccc-ccCCccCCEEeccc-CcCCcCchh-hhCCCCCceeecc
Q 027557 7 DCPAVLSRNPIREIGD-SLLNMKAITKLSLSNCQVQIIGSS-LKSCTELKELRLAH-NDIKTLPAE-LAFNKKLQNLDLG 82 (222)
Q Consensus 7 ~~~L~L~~n~l~~lp~-~~~~l~~L~~L~L~~n~i~~lp~~-~~~l~~L~~L~l~~-N~i~~lp~~-~~~l~~L~~L~L~ 82 (222)
++.++|..|.|+.||+ +|..++.|++|||++|.|+.|.+. |.+++.|..|.+.+ |+|+++|.+ |.++.+|+.|.+.
T Consensus 69 tveirLdqN~I~~iP~~aF~~l~~LRrLdLS~N~Is~I~p~AF~GL~~l~~Lvlyg~NkI~~l~k~~F~gL~slqrLllN 148 (498)
T KOG4237|consen 69 TVEIRLDQNQISSIPPGAFKTLHRLRRLDLSKNNISFIAPDAFKGLASLLSLVLYGNNKITDLPKGAFGGLSSLQRLLLN 148 (498)
T ss_pred ceEEEeccCCcccCChhhccchhhhceecccccchhhcChHhhhhhHhhhHHHhhcCCchhhhhhhHhhhHHHHHHHhcC
Confidence 3567777888887764 677778888888888888775544 77777776666544 777777765 6667777777777
Q ss_pred CCccCCCcchHhhcCCCCCCEEEeeCCCCCCch
Q 027557 83 KNLITRWSELKVLKSLVSLNNLNLQGNPVAEYD 115 (222)
Q Consensus 83 ~N~i~~~~~~~~~~~l~~L~~L~l~~N~l~~~~ 115 (222)
-|+|..++. +.|..+++|..|.+..|.+..++
T Consensus 149 an~i~Cir~-~al~dL~~l~lLslyDn~~q~i~ 180 (498)
T KOG4237|consen 149 ANHINCIRQ-DALRDLPSLSLLSLYDNKIQSIC 180 (498)
T ss_pred hhhhcchhH-HHHHHhhhcchhcccchhhhhhc
Confidence 776666655 56666666666666666555544
No 21
>PLN03150 hypothetical protein; Provisional
Probab=99.25 E-value=2.6e-11 Score=108.07 Aligned_cols=106 Identities=23% Similarity=0.259 Sum_probs=90.2
Q ss_pred ccEEEeecCCCc-cchhhhcCCCCCcEEEcccCCCcc-ccccccCCccCCEEecccCcCC-cCchhhhCCCCCceeeccC
Q 027557 7 DCPAVLSRNPIR-EIGDSLLNMKAITKLSLSNCQVQI-IGSSLKSCTELKELRLAHNDIK-TLPAELAFNKKLQNLDLGK 83 (222)
Q Consensus 7 ~~~L~L~~n~l~-~lp~~~~~l~~L~~L~L~~n~i~~-lp~~~~~l~~L~~L~l~~N~i~-~lp~~~~~l~~L~~L~L~~ 83 (222)
++.|+|++|.+. .+|..+..+++|+.|+|++|.|+. +|..+..+++|+.|+|++|.++ .+|..+..+++|+.|+|++
T Consensus 420 v~~L~L~~n~L~g~ip~~i~~L~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~iP~~l~~L~~L~~L~Ls~ 499 (623)
T PLN03150 420 IDGLGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLNG 499 (623)
T ss_pred EEEEECCCCCccccCCHHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECCCCCCCCCCchHHhcCCCCCEEECcC
Confidence 578999999998 678899999999999999999985 8877999999999999999998 7888899999999999999
Q ss_pred CccCCCcchHhhcC-CCCCCEEEeeCCCCCC
Q 027557 84 NLITRWSELKVLKS-LVSLNNLNLQGNPVAE 113 (222)
Q Consensus 84 N~i~~~~~~~~~~~-l~~L~~L~l~~N~l~~ 113 (222)
|.+.+.-+ ..++. ..++..+++.+|+..|
T Consensus 500 N~l~g~iP-~~l~~~~~~~~~l~~~~N~~lc 529 (623)
T PLN03150 500 NSLSGRVP-AALGGRLLHRASFNFTDNAGLC 529 (623)
T ss_pred CcccccCC-hHHhhccccCceEEecCCcccc
Confidence 99885333 25554 3567889999997554
No 22
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]
Probab=99.24 E-value=3e-12 Score=104.52 Aligned_cols=109 Identities=27% Similarity=0.316 Sum_probs=95.7
Q ss_pred cchh-hhcCCCCCcEEEcccCCCcccccc-ccCCccCCEEecccCcCCcCchh-hhCCCCCceeeccCCccCCCcchHhh
Q 027557 19 EIGD-SLLNMKAITKLSLSNCQVQIIGSS-LKSCTELKELRLAHNDIKTLPAE-LAFNKKLQNLDLGKNLITRWSELKVL 95 (222)
Q Consensus 19 ~lp~-~~~~l~~L~~L~L~~n~i~~lp~~-~~~l~~L~~L~l~~N~i~~lp~~-~~~l~~L~~L~L~~N~i~~~~~~~~~ 95 (222)
..|. .|..+++|++|+|++|.|+.+..+ |..+..++.|.|..|+|..+... |.++..|++|+|.+|+|+.+.+ ..|
T Consensus 264 ~cP~~cf~~L~~L~~lnlsnN~i~~i~~~aFe~~a~l~eL~L~~N~l~~v~~~~f~~ls~L~tL~L~~N~it~~~~-~aF 342 (498)
T KOG4237|consen 264 ICPAKCFKKLPNLRKLNLSNNKITRIEDGAFEGAAELQELYLTRNKLEFVSSGMFQGLSGLKTLSLYDNQITTVAP-GAF 342 (498)
T ss_pred cChHHHHhhcccceEeccCCCccchhhhhhhcchhhhhhhhcCcchHHHHHHHhhhccccceeeeecCCeeEEEec-ccc
Confidence 4453 688999999999999999998776 99999999999999999988544 8899999999999999999987 789
Q ss_pred cCCCCCCEEEeeCCCCCCchhHHHHHHHhCCccc
Q 027557 96 KSLVSLNNLNLQGNPVAEYDKLAKKVKNLLPSLH 129 (222)
Q Consensus 96 ~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~ 129 (222)
..+.+|..|.+-.|||.|.+...| +..++.+-.
T Consensus 343 ~~~~~l~~l~l~~Np~~CnC~l~w-l~~Wlr~~~ 375 (498)
T KOG4237|consen 343 QTLFSLSTLNLLSNPFNCNCRLAW-LGEWLRKKS 375 (498)
T ss_pred cccceeeeeehccCcccCccchHH-HHHHHhhCC
Confidence 999999999999999999987544 666776655
No 23
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=99.24 E-value=7.7e-12 Score=77.53 Aligned_cols=57 Identities=26% Similarity=0.433 Sum_probs=25.8
Q ss_pred CCcEEEcccCCCcccccc-ccCCccCCEEecccCcCCcCch-hhhCCCCCceeeccCCc
Q 027557 29 AITKLSLSNCQVQIIGSS-LKSCTELKELRLAHNDIKTLPA-ELAFNKKLQNLDLGKNL 85 (222)
Q Consensus 29 ~L~~L~L~~n~i~~lp~~-~~~l~~L~~L~l~~N~i~~lp~-~~~~l~~L~~L~L~~N~ 85 (222)
+|++|++++|.|+.+|.. |..+++|++|++++|.|+.++. .|..+++|++|++++|+
T Consensus 2 ~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~ 60 (61)
T PF13855_consen 2 NLESLDLSNNKLTEIPPDSFSNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNNN 60 (61)
T ss_dssp TESEEEETSSTESEECTTTTTTGTTESEEEETSSSESEEETTTTTTSTTESEEEETSSS
T ss_pred cCcEEECCCCCCCccCHHHHcCCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcCCc
Confidence 344444444444444432 4444444444444444444432 24444444444444443
No 24
>KOG2123 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.22 E-value=1.9e-12 Score=101.45 Aligned_cols=117 Identities=31% Similarity=0.412 Sum_probs=104.2
Q ss_pred CCCCCcEEEcccCCCccccccccCCccCCEEecccCcCCcCchhhhCCCCCceeeccCCccCCCcchHhhcCCCCCCEEE
Q 027557 26 NMKAITKLSLSNCQVQIIGSSLKSCTELKELRLAHNDIKTLPAELAFNKKLQNLDLGKNLITRWSELKVLKSLVSLNNLN 105 (222)
Q Consensus 26 ~l~~L~~L~L~~n~i~~lp~~~~~l~~L~~L~l~~N~i~~lp~~~~~l~~L~~L~L~~N~i~~~~~~~~~~~l~~L~~L~ 105 (222)
.+.+.+.|++-+|.|+.|. -...++.|++|.|+-|+|+.+ ..+..+++|+.|+|..|.|.++.++.-+.++++|+.|+
T Consensus 17 dl~~vkKLNcwg~~L~DIs-ic~kMp~lEVLsLSvNkIssL-~pl~rCtrLkElYLRkN~I~sldEL~YLknlpsLr~LW 94 (388)
T KOG2123|consen 17 DLENVKKLNCWGCGLDDIS-ICEKMPLLEVLSLSVNKISSL-APLQRCTRLKELYLRKNCIESLDELEYLKNLPSLRTLW 94 (388)
T ss_pred HHHHhhhhcccCCCccHHH-HHHhcccceeEEeeccccccc-hhHHHHHHHHHHHHHhcccccHHHHHHHhcCchhhhHh
Confidence 4667888999999999875 567899999999999999999 57899999999999999999999988899999999999
Q ss_pred eeCCCCCCc--hhHHHHHHHhCCccccccCCCCChhhHhhh
Q 027557 106 LQGNPVAEY--DKLAKKVKNLLPSLHIFNARPINRITKNEK 144 (222)
Q Consensus 106 l~~N~l~~~--~~~~~~~~~~l~~L~~l~~~~~~~~~~~~~ 144 (222)
|..||.+.- +.|+..++..+|+|+.||+.+++.++...+
T Consensus 95 L~ENPCc~~ag~nYR~~VLR~LPnLkKLDnv~VteeEle~A 135 (388)
T KOG2123|consen 95 LDENPCCGEAGQNYRRKVLRVLPNLKKLDNVPVTEEELEEA 135 (388)
T ss_pred hccCCcccccchhHHHHHHHHcccchhccCccccHHHHHHH
Confidence 999997544 689999999999999999999997765544
No 25
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=99.19 E-value=1.2e-11 Score=76.62 Aligned_cols=60 Identities=27% Similarity=0.450 Sum_probs=55.7
Q ss_pred ccCCEEecccCcCCcCch-hhhCCCCCceeeccCCccCCCcchHhhcCCCCCCEEEeeCCCC
Q 027557 51 TELKELRLAHNDIKTLPA-ELAFNKKLQNLDLGKNLITRWSELKVLKSLVSLNNLNLQGNPV 111 (222)
Q Consensus 51 ~~L~~L~l~~N~i~~lp~-~~~~l~~L~~L~L~~N~i~~~~~~~~~~~l~~L~~L~l~~N~l 111 (222)
++|++|++++|+|+.+|. .|..+++|++|++++|.|..+++ ..|..+++|++|++++|+|
T Consensus 1 p~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N~l~~i~~-~~f~~l~~L~~L~l~~N~l 61 (61)
T PF13855_consen 1 PNLESLDLSNNKLTEIPPDSFSNLPNLETLDLSNNNLTSIPP-DAFSNLPNLRYLDLSNNNL 61 (61)
T ss_dssp TTESEEEETSSTESEECTTTTTTGTTESEEEETSSSESEEET-TTTTTSTTESEEEETSSSB
T ss_pred CcCcEEECCCCCCCccCHHHHcCCCCCCEeEccCCccCccCH-HHHcCCCCCCEEeCcCCcC
Confidence 579999999999999976 48899999999999999999987 7899999999999999985
No 26
>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]
Probab=99.17 E-value=4.2e-12 Score=107.87 Aligned_cols=126 Identities=20% Similarity=0.322 Sum_probs=103.9
Q ss_pred cEEEeecCCCccchhhhcCCCCCcEEEcccCCCccccccccCCccCCEEecccCcCCcCchhhhCCCCCceeeccCCccC
Q 027557 8 CPAVLSRNPIREIGDSLLNMKAITKLSLSNCQVQIIGSSLKSCTELKELRLAHNDIKTLPAELAFNKKLQNLDLGKNLIT 87 (222)
Q Consensus 8 ~~L~L~~n~l~~lp~~~~~l~~L~~L~L~~n~i~~lp~~~~~l~~L~~L~l~~N~i~~lp~~~~~l~~L~~L~L~~N~i~ 87 (222)
+.|+|+.|+++.+|..++.++ |+.|-+++|+++.+|..++.+.+|..||.+.|.|..+|..++.+.+|+.|++..|++.
T Consensus 124 t~l~ls~NqlS~lp~~lC~lp-Lkvli~sNNkl~~lp~~ig~~~tl~~ld~s~nei~slpsql~~l~slr~l~vrRn~l~ 202 (722)
T KOG0532|consen 124 TFLDLSSNQLSHLPDGLCDLP-LKVLIVSNNKLTSLPEEIGLLPTLAHLDVSKNEIQSLPSQLGYLTSLRDLNVRRNHLE 202 (722)
T ss_pred HHhhhccchhhcCChhhhcCc-ceeEEEecCccccCCcccccchhHHHhhhhhhhhhhchHHhhhHHHHHHHHHhhhhhh
Confidence 578888899988888877765 8888999999999998888888999999999999999888999999999999999999
Q ss_pred CCcchHhhcCCCCCCEEEeeCCCCCCchhHHHHHHHhCCcccc--ccCCCCChhhH
Q 027557 88 RWSELKVLKSLVSLNNLNLQGNPVAEYDKLAKKVKNLLPSLHI--FNARPINRITK 141 (222)
Q Consensus 88 ~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~--l~~~~~~~~~~ 141 (222)
.+|+ .+. .-.|..||++.|.+..+|-.. ..+..|++ |+.+|....+.
T Consensus 203 ~lp~--El~-~LpLi~lDfScNkis~iPv~f----r~m~~Lq~l~LenNPLqSPPA 251 (722)
T KOG0532|consen 203 DLPE--ELC-SLPLIRLDFSCNKISYLPVDF----RKMRHLQVLQLENNPLQSPPA 251 (722)
T ss_pred hCCH--HHh-CCceeeeecccCceeecchhh----hhhhhheeeeeccCCCCCChH
Confidence 9987 666 445899999999999988532 35666664 57777765443
No 27
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=99.15 E-value=1.2e-10 Score=105.12 Aligned_cols=100 Identities=27% Similarity=0.355 Sum_probs=68.9
Q ss_pred ccEEEeecCCCccchhhhcCCCCCcEEEcccCCCccccccccCCccCCEEecccCcCCcCchhhhCCCCCceeeccCCcc
Q 027557 7 DCPAVLSRNPIREIGDSLLNMKAITKLSLSNCQVQIIGSSLKSCTELKELRLAHNDIKTLPAELAFNKKLQNLDLGKNLI 86 (222)
Q Consensus 7 ~~~L~L~~n~l~~lp~~~~~l~~L~~L~L~~n~i~~lp~~~~~l~~L~~L~l~~N~i~~lp~~~~~l~~L~~L~L~~N~i 86 (222)
++.|+|++|.|+.+|..+. .+|+.|++++|.|+.+|..+. .+|+.|+|++|.++.+|..+. .+|+.|++++|+|
T Consensus 201 L~~L~Ls~N~LtsLP~~l~--~nL~~L~Ls~N~LtsLP~~l~--~~L~~L~Ls~N~L~~LP~~l~--s~L~~L~Ls~N~L 274 (754)
T PRK15370 201 ITTLILDNNELKSLPENLQ--GNIKTLYANSNQLTSIPATLP--DTIQEMELSINRITELPERLP--SALQSLDLFHNKI 274 (754)
T ss_pred CcEEEecCCCCCcCChhhc--cCCCEEECCCCccccCChhhh--ccccEEECcCCccCcCChhHh--CCCCEEECcCCcc
Confidence 5677788888887776543 477888888888777775543 357777777777777766553 4677777777777
Q ss_pred CCCcchHhhcCCCCCCEEEeeCCCCCCchh
Q 027557 87 TRWSELKVLKSLVSLNNLNLQGNPVAEYDK 116 (222)
Q Consensus 87 ~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~ 116 (222)
..+|. .+ .++|+.|++++|.+..+|.
T Consensus 275 ~~LP~--~l--~~sL~~L~Ls~N~Lt~LP~ 300 (754)
T PRK15370 275 SCLPE--NL--PEELRYLSVYDNSIRTLPA 300 (754)
T ss_pred Ccccc--cc--CCCCcEEECCCCccccCcc
Confidence 77665 23 2467777777777766543
No 28
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=99.13 E-value=8.5e-11 Score=105.86 Aligned_cols=58 Identities=40% Similarity=0.542 Sum_probs=32.2
Q ss_pred cCCEEecccCcCCcCchhhhCCCCCceeeccCCccCCCcchHhhcCCCCCCEEEeeCCCCCCc
Q 027557 52 ELKELRLAHNDIKTLPAELAFNKKLQNLDLGKNLITRWSELKVLKSLVSLNNLNLQGNPVAEY 114 (222)
Q Consensus 52 ~L~~L~l~~N~i~~lp~~~~~l~~L~~L~L~~N~i~~~~~~~~~~~l~~L~~L~l~~N~l~~~ 114 (222)
+|+.|++++|+|+.+|.. ..+|+.|++++|+|+.+|. .+..+++|..|++++|+|++.
T Consensus 403 ~L~~LdLS~N~LssIP~l---~~~L~~L~Ls~NqLt~LP~--sl~~L~~L~~LdLs~N~Ls~~ 460 (788)
T PRK15387 403 ELKELMVSGNRLTSLPML---PSGLLSLSVYRNQLTRLPE--SLIHLSSETTVNLEGNPLSER 460 (788)
T ss_pred CCCEEEccCCcCCCCCcc---hhhhhhhhhccCcccccCh--HHhhccCCCeEECCCCCCCch
Confidence 344444444444444421 1245555666666666654 566667777777777776654
No 29
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=99.12 E-value=3.2e-11 Score=108.78 Aligned_cols=103 Identities=23% Similarity=0.319 Sum_probs=50.1
Q ss_pred CccEEEeecCCCccchhhhcCCCCCcEEEcccCCCcccccccc-------------------CCccCCEEecccCcCCcC
Q 027557 6 RDCPAVLSRNPIREIGDSLLNMKAITKLSLSNCQVQIIGSSLK-------------------SCTELKELRLAHNDIKTL 66 (222)
Q Consensus 6 ~~~~L~L~~n~l~~lp~~~~~l~~L~~L~L~~n~i~~lp~~~~-------------------~l~~L~~L~l~~N~i~~l 66 (222)
.++.|+|++|.|+.+|..+. +.|+.|++++|.++.+|..+. -.++|+.|++++|+|+.+
T Consensus 284 sL~~L~Ls~N~Lt~LP~~lp--~sL~~L~Ls~N~Lt~LP~~l~~sL~~L~Ls~N~Lt~LP~~l~~sL~~L~Ls~N~L~~L 361 (754)
T PRK15370 284 ELRYLSVYDNSIRTLPAHLP--SGITHLNVQSNSLTALPETLPPGLKTLEAGENALTSLPASLPPELQVLDVSKNQITVL 361 (754)
T ss_pred CCcEEECCCCccccCcccch--hhHHHHHhcCCccccCCccccccceeccccCCccccCChhhcCcccEEECCCCCCCcC
Confidence 45677777777777664332 234444444444444443221 013455555555555544
Q ss_pred chhhhCCCCCceeeccCCccCCCcchHhhcCCCCCCEEEeeCCCCCCchh
Q 027557 67 PAELAFNKKLQNLDLGKNLITRWSELKVLKSLVSLNNLNLQGNPVAEYDK 116 (222)
Q Consensus 67 p~~~~~l~~L~~L~L~~N~i~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~ 116 (222)
|..+. ++|+.|+|++|.|+.+|+ .+. ..|+.|++++|.+..+|.
T Consensus 362 P~~lp--~~L~~LdLs~N~Lt~LP~--~l~--~sL~~LdLs~N~L~~LP~ 405 (754)
T PRK15370 362 PETLP--PTITTLDVSRNALTNLPE--NLP--AALQIMQASRNNLVRLPE 405 (754)
T ss_pred Chhhc--CCcCEEECCCCcCCCCCH--hHH--HHHHHHhhccCCcccCch
Confidence 43332 345555555555555543 221 134455555555555444
No 30
>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]
Probab=99.08 E-value=1e-11 Score=87.74 Aligned_cols=105 Identities=30% Similarity=0.326 Sum_probs=54.6
Q ss_pred EEEeecCCCccchhh---hcCCCCCcEEEcccCCCcccccccc-CCccCCEEecccCcCCcCchhhhCCCCCceeeccCC
Q 027557 9 PAVLSRNPIREIGDS---LLNMKAITKLSLSNCQVQIIGSSLK-SCTELKELRLAHNDIKTLPAELAFNKKLQNLDLGKN 84 (222)
Q Consensus 9 ~L~L~~n~l~~lp~~---~~~l~~L~~L~L~~n~i~~lp~~~~-~l~~L~~L~l~~N~i~~lp~~~~~l~~L~~L~L~~N 84 (222)
.++|+++.|..+++. +....+|+.++|++|.+..+|..|. ..+.++.|++++|.|+++|..+..++.|+.|+++.|
T Consensus 31 ~ldLssc~lm~i~davy~l~~~~el~~i~ls~N~fk~fp~kft~kf~t~t~lNl~~neisdvPeE~Aam~aLr~lNl~~N 110 (177)
T KOG4579|consen 31 FLDLSSCQLMYIADAVYMLSKGYELTKISLSDNGFKKFPKKFTIKFPTATTLNLANNEISDVPEELAAMPALRSLNLRFN 110 (177)
T ss_pred hcccccchhhHHHHHHHHHhCCceEEEEecccchhhhCCHHHhhccchhhhhhcchhhhhhchHHHhhhHHhhhcccccC
Confidence 345555555544432 2333445555555555555554432 223555555555555555555555555555555555
Q ss_pred ccCCCcchHhhcCCCCCCEEEeeCCCCCCch
Q 027557 85 LITRWSELKVLKSLVSLNNLNLQGNPVAEYD 115 (222)
Q Consensus 85 ~i~~~~~~~~~~~l~~L~~L~l~~N~l~~~~ 115 (222)
.+...|. .+..+.+|..|+..+|.+..++
T Consensus 111 ~l~~~p~--vi~~L~~l~~Lds~~na~~eid 139 (177)
T KOG4579|consen 111 PLNAEPR--VIAPLIKLDMLDSPENARAEID 139 (177)
T ss_pred ccccchH--HHHHHHhHHHhcCCCCccccCc
Confidence 5555544 4444555555555555554444
No 31
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=99.02 E-value=1.4e-10 Score=90.11 Aligned_cols=120 Identities=27% Similarity=0.337 Sum_probs=99.7
Q ss_pred chhhhcCCCCCcEEEcccCCCccccccccCCccCCEEecccC--cCC-cCchhhhCCCCCceeeccCCccCCCcchHhhc
Q 027557 20 IGDSLLNMKAITKLSLSNCQVQIIGSSLKSCTELKELRLAHN--DIK-TLPAELAFNKKLQNLDLGKNLITRWSELKVLK 96 (222)
Q Consensus 20 lp~~~~~l~~L~~L~L~~n~i~~lp~~~~~l~~L~~L~l~~N--~i~-~lp~~~~~l~~L~~L~L~~N~i~~~~~~~~~~ 96 (222)
++.-...+..|+.|++.+..++.+. .+..|++|++|.++.| ++. .++.-...+++|++|++++|+|..+..+..+.
T Consensus 35 ~~gl~d~~~~le~ls~~n~gltt~~-~~P~Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~Nki~~lstl~pl~ 113 (260)
T KOG2739|consen 35 LGGLTDEFVELELLSVINVGLTTLT-NFPKLPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGNKIKDLSTLRPLK 113 (260)
T ss_pred cccccccccchhhhhhhccceeecc-cCCCcchhhhhcccCCcccccccceehhhhCCceeEEeecCCccccccccchhh
Confidence 4334456778888899999988876 6888999999999999 555 44434455699999999999999877777788
Q ss_pred CCCCCCEEEeeCCCCCCchhHHHHHHHhCCccccccCCCCChhh
Q 027557 97 SLVSLNNLNLQGNPVAEYDKLAKKVKNLLPSLHIFNARPINRIT 140 (222)
Q Consensus 97 ~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~l~~~~~~~~~ 140 (222)
.+.+|..|++.+|+......|+..+...+|+|+++|..-+...+
T Consensus 114 ~l~nL~~Ldl~n~~~~~l~dyre~vf~ll~~L~~LD~~dv~~~E 157 (260)
T KOG2739|consen 114 ELENLKSLDLFNCSVTNLDDYREKVFLLLPSLKYLDGCDVDGEE 157 (260)
T ss_pred hhcchhhhhcccCCccccccHHHHHHHHhhhhccccccccCCcc
Confidence 99999999999999998999999999999999999887766443
No 32
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=99.02 E-value=7.7e-10 Score=90.72 Aligned_cols=130 Identities=25% Similarity=0.264 Sum_probs=80.3
Q ss_pred CccEEEeecCCCcc-chhhhcCCCC---CcEEEcccCCCcc-----ccccccCC-ccCCEEecccCcCC-----cCchhh
Q 027557 6 RDCPAVLSRNPIRE-IGDSLLNMKA---ITKLSLSNCQVQI-----IGSSLKSC-TELKELRLAHNDIK-----TLPAEL 70 (222)
Q Consensus 6 ~~~~L~L~~n~l~~-lp~~~~~l~~---L~~L~L~~n~i~~-----lp~~~~~l-~~L~~L~l~~N~i~-----~lp~~~ 70 (222)
.++.|++++|.+.. .+..+..+.. |+.|++++|.++. +...+..+ ++|+.|++++|.++ .++..+
T Consensus 82 ~L~~L~l~~~~~~~~~~~~~~~l~~~~~L~~L~ls~~~~~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~~~~~~ 161 (319)
T cd00116 82 GLQELDLSDNALGPDGCGVLESLLRSSSLQELKLNNNGLGDRGLRLLAKGLKDLPPALEKLVLGRNRLEGASCEALAKAL 161 (319)
T ss_pred ceeEEEccCCCCChhHHHHHHHHhccCcccEEEeeCCccchHHHHHHHHHHHhCCCCceEEEcCCCcCCchHHHHHHHHH
Confidence 45778888888763 3344444443 8888888887763 23334555 77888888888777 233345
Q ss_pred hCCCCCceeeccCCccCCCc--ch-HhhcCCCCCCEEEeeCCCCCCch-hHHHHHHHhCCccccccCCC
Q 027557 71 AFNKKLQNLDLGKNLITRWS--EL-KVLKSLVSLNNLNLQGNPVAEYD-KLAKKVKNLLPSLHIFNARP 135 (222)
Q Consensus 71 ~~l~~L~~L~L~~N~i~~~~--~~-~~~~~l~~L~~L~l~~N~l~~~~-~~~~~~~~~l~~L~~l~~~~ 135 (222)
..+..|++|++++|.+++-. .+ ..+..+++|++|++++|.+.... ......+..+++|+.|+...
T Consensus 162 ~~~~~L~~L~l~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~~~~~~~L~~L~ls~ 230 (319)
T cd00116 162 RANRDLKELNLANNGIGDAGIRALAEGLKANCNLEVLDLNNNGLTDEGASALAETLASLKSLEVLNLGD 230 (319)
T ss_pred HhCCCcCEEECcCCCCchHHHHHHHHHHHhCCCCCEEeccCCccChHHHHHHHHHhcccCCCCEEecCC
Confidence 66677888888888776411 11 23455567888888888776442 12223444567777776654
No 33
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=99.01 E-value=6.5e-10 Score=100.26 Aligned_cols=99 Identities=19% Similarity=0.224 Sum_probs=58.5
Q ss_pred cEEEeecCCCccchhhhcCCCCCcEEEcccCCCccccccccCCccCCEEecccCcCCcCchhhh----------------
Q 027557 8 CPAVLSRNPIREIGDSLLNMKAITKLSLSNCQVQIIGSSLKSCTELKELRLAHNDIKTLPAELA---------------- 71 (222)
Q Consensus 8 ~~L~L~~n~l~~lp~~~~~l~~L~~L~L~~n~i~~lp~~~~~l~~L~~L~l~~N~i~~lp~~~~---------------- 71 (222)
..|+|++|.|+.+|+.+. ++|+.|++++|.|+.+|.. +++|++|++++|+|+.+|....
T Consensus 204 ~~LdLs~~~LtsLP~~l~--~~L~~L~L~~N~Lt~LP~l---p~~Lk~LdLs~N~LtsLP~lp~sL~~L~Ls~N~L~~Lp 278 (788)
T PRK15387 204 AVLNVGESGLTTLPDCLP--AHITTLVIPDNNLTSLPAL---PPELRTLEVSGNQLTSLPVLPPGLLELSIFSNPLTHLP 278 (788)
T ss_pred cEEEcCCCCCCcCCcchh--cCCCEEEccCCcCCCCCCC---CCCCcEEEecCCccCcccCcccccceeeccCCchhhhh
Confidence 456677777776666543 3566666666666666632 3556666666666665553110
Q ss_pred -CCCCCceeeccCCccCCCcchHhhcCCCCCCEEEeeCCCCCCchh
Q 027557 72 -FNKKLQNLDLGKNLITRWSELKVLKSLVSLNNLNLQGNPVAEYDK 116 (222)
Q Consensus 72 -~l~~L~~L~L~~N~i~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~ 116 (222)
.+.+|+.|++++|+|..+|. .+++|+.|++++|.+..++.
T Consensus 279 ~lp~~L~~L~Ls~N~Lt~LP~-----~p~~L~~LdLS~N~L~~Lp~ 319 (788)
T PRK15387 279 ALPSGLCKLWIFGNQLTSLPV-----LPPGLQELSVSDNQLASLPA 319 (788)
T ss_pred hchhhcCEEECcCCccccccc-----cccccceeECCCCccccCCC
Confidence 11234555555555555543 23678888888888877654
No 34
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=99.01 E-value=7e-10 Score=90.94 Aligned_cols=127 Identities=29% Similarity=0.329 Sum_probs=89.8
Q ss_pred ccEEEeecCCCcc-----chhhhcCC-CCCcEEEcccCCCcc-----ccccccCCccCCEEecccCcCCc-----Cchhh
Q 027557 7 DCPAVLSRNPIRE-----IGDSLLNM-KAITKLSLSNCQVQI-----IGSSLKSCTELKELRLAHNDIKT-----LPAEL 70 (222)
Q Consensus 7 ~~~L~L~~n~l~~-----lp~~~~~l-~~L~~L~L~~n~i~~-----lp~~~~~l~~L~~L~l~~N~i~~-----lp~~~ 70 (222)
+++|++++|.+.. +...+..+ ++|+.|++++|.++. ++..+..+++|++|++++|.++. ++..+
T Consensus 110 L~~L~ls~~~~~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~l 189 (319)
T cd00116 110 LQELKLNNNGLGDRGLRLLAKGLKDLPPALEKLVLGRNRLEGASCEALAKALRANRDLKELNLANNGIGDAGIRALAEGL 189 (319)
T ss_pred ccEEEeeCCccchHHHHHHHHHHHhCCCCceEEEcCCCcCCchHHHHHHHHHHhCCCcCEEECcCCCCchHHHHHHHHHH
Confidence 7889999999872 33456667 899999999999883 44446777889999999998872 33445
Q ss_pred hCCCCCceeeccCCccCCCcc--h-HhhcCCCCCCEEEeeCCCCCCchhHHHHHHHh----CCccccccCCC
Q 027557 71 AFNKKLQNLDLGKNLITRWSE--L-KVLKSLVSLNNLNLQGNPVAEYDKLAKKVKNL----LPSLHIFNARP 135 (222)
Q Consensus 71 ~~l~~L~~L~L~~N~i~~~~~--~-~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~~----l~~L~~l~~~~ 135 (222)
..+++|+.|++++|.+.+... + ..+..+++|++|++++|++.+.... .+... .+.|+.++...
T Consensus 190 ~~~~~L~~L~L~~n~i~~~~~~~l~~~~~~~~~L~~L~ls~n~l~~~~~~--~l~~~~~~~~~~L~~L~l~~ 259 (319)
T cd00116 190 KANCNLEVLDLNNNGLTDEGASALAETLASLKSLEVLNLGDNNLTDAGAA--ALASALLSPNISLLTLSLSC 259 (319)
T ss_pred HhCCCCCEEeccCCccChHHHHHHHHHhcccCCCCEEecCCCcCchHHHH--HHHHHHhccCCCceEEEccC
Confidence 666789999999998875432 1 3466788899999999988763211 12222 36777665543
No 35
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=98.97 E-value=2.4e-10 Score=96.74 Aligned_cols=102 Identities=30% Similarity=0.411 Sum_probs=71.5
Q ss_pred ccEEEeecCCCccchhhhcCCC-CCcEEEcccCCCccccccccCCccCCEEecccCcCCcCchhhhCCCCCceeeccCCc
Q 027557 7 DCPAVLSRNPIREIGDSLLNMK-AITKLSLSNCQVQIIGSSLKSCTELKELRLAHNDIKTLPAELAFNKKLQNLDLGKNL 85 (222)
Q Consensus 7 ~~~L~L~~n~l~~lp~~~~~l~-~L~~L~L~~n~i~~lp~~~~~l~~L~~L~l~~N~i~~lp~~~~~l~~L~~L~L~~N~ 85 (222)
++.|++.+|.+++|++....+. +|+.|++++|.|..+|..+..+++|+.|++++|+++++|...+..+.|+.|++++|+
T Consensus 118 l~~L~l~~n~i~~i~~~~~~~~~nL~~L~l~~N~i~~l~~~~~~l~~L~~L~l~~N~l~~l~~~~~~~~~L~~L~ls~N~ 197 (394)
T COG4886 118 LTSLDLDNNNITDIPPLIGLLKSNLKELDLSDNKIESLPSPLRNLPNLKNLDLSFNDLSDLPKLLSNLSNLNNLDLSGNK 197 (394)
T ss_pred eeEEecCCcccccCccccccchhhcccccccccchhhhhhhhhccccccccccCCchhhhhhhhhhhhhhhhheeccCCc
Confidence 4567777777777766666663 777777777777777656777777777777777777776655567777777777777
Q ss_pred cCCCcchHhhcCCCCCCEEEeeCCC
Q 027557 86 ITRWSELKVLKSLVSLNNLNLQGNP 110 (222)
Q Consensus 86 i~~~~~~~~~~~l~~L~~L~l~~N~ 110 (222)
|..+|. ....+..|..+.+++|+
T Consensus 198 i~~l~~--~~~~~~~L~~l~~~~N~ 220 (394)
T COG4886 198 ISDLPP--EIELLSALEELDLSNNS 220 (394)
T ss_pred cccCch--hhhhhhhhhhhhhcCCc
Confidence 777765 33445556667776664
No 36
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=98.95 E-value=2.3e-10 Score=96.87 Aligned_cols=106 Identities=28% Similarity=0.371 Sum_probs=78.4
Q ss_pred CccEEEeecCCCccchhhhcCCCCCcEEEcccCCCccccccccCCccCCEEecccCcCCcCchhhhCCCCCceeeccCCc
Q 027557 6 RDCPAVLSRNPIREIGDSLLNMKAITKLSLSNCQVQIIGSSLKSCTELKELRLAHNDIKTLPAELAFNKKLQNLDLGKNL 85 (222)
Q Consensus 6 ~~~~L~L~~n~l~~lp~~~~~l~~L~~L~L~~n~i~~lp~~~~~l~~L~~L~l~~N~i~~lp~~~~~l~~L~~L~L~~N~ 85 (222)
.++.|++++|.+..+|..+..+++|+.|++++|.++.+|.....++.|+.|++++|+++.+|........|++|.+++|.
T Consensus 141 nL~~L~l~~N~i~~l~~~~~~l~~L~~L~l~~N~l~~l~~~~~~~~~L~~L~ls~N~i~~l~~~~~~~~~L~~l~~~~N~ 220 (394)
T COG4886 141 NLKELDLSDNKIESLPSPLRNLPNLKNLDLSFNDLSDLPKLLSNLSNLNNLDLSGNKISDLPPEIELLSALEELDLSNNS 220 (394)
T ss_pred hcccccccccchhhhhhhhhccccccccccCCchhhhhhhhhhhhhhhhheeccCCccccCchhhhhhhhhhhhhhcCCc
Confidence 46889999999999987888999999999999999999876668889999999999999888665555568888888774
Q ss_pred cCCCcchHhhcCCCCCCEEEeeCCCCCC
Q 027557 86 ITRWSELKVLKSLVSLNNLNLQGNPVAE 113 (222)
Q Consensus 86 i~~~~~~~~~~~l~~L~~L~l~~N~l~~ 113 (222)
+...+. .+..+.++..+.+.+|++..
T Consensus 221 ~~~~~~--~~~~~~~l~~l~l~~n~~~~ 246 (394)
T COG4886 221 IIELLS--SLSNLKNLSGLELSNNKLED 246 (394)
T ss_pred ceecch--hhhhcccccccccCCceeee
Confidence 333222 34444444444444444443
No 37
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]
Probab=98.94 E-value=4.4e-11 Score=104.43 Aligned_cols=127 Identities=28% Similarity=0.307 Sum_probs=102.5
Q ss_pred ccEEEeecCCCccchhhhcCCCCCcEEEcccCCCccccccccCCccCCEEecccCcCCcCchh-hhCCCCCceeeccCCc
Q 027557 7 DCPAVLSRNPIREIGDSLLNMKAITKLSLSNCQVQIIGSSLKSCTELKELRLAHNDIKTLPAE-LAFNKKLQNLDLGKNL 85 (222)
Q Consensus 7 ~~~L~L~~n~l~~lp~~~~~l~~L~~L~L~~n~i~~lp~~~~~l~~L~~L~l~~N~i~~lp~~-~~~l~~L~~L~L~~N~ 85 (222)
+.+.+.++|.+..+..++.-++.|+.|+|++|+++.+. .+..+++|++|||++|.++.+|.- ..++ .|+.|++++|.
T Consensus 166 L~~a~fsyN~L~~mD~SLqll~ale~LnLshNk~~~v~-~Lr~l~~LkhLDlsyN~L~~vp~l~~~gc-~L~~L~lrnN~ 243 (1096)
T KOG1859|consen 166 LATASFSYNRLVLMDESLQLLPALESLNLSHNKFTKVD-NLRRLPKLKHLDLSYNCLRHVPQLSMVGC-KLQLLNLRNNA 243 (1096)
T ss_pred HhhhhcchhhHHhHHHHHHHHHHhhhhccchhhhhhhH-HHHhcccccccccccchhccccccchhhh-hheeeeecccH
Confidence 34668899999999889999999999999999999988 789999999999999999998742 3333 39999999999
Q ss_pred cCCCcchHhhcCCCCCCEEEeeCCCCCCchhHHHHHHHhCCccc--cccCCCCChhh
Q 027557 86 ITRWSELKVLKSLVSLNNLNLQGNPVAEYDKLAKKVKNLLPSLH--IFNARPINRIT 140 (222)
Q Consensus 86 i~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~--~l~~~~~~~~~ 140 (222)
++++. .+.++.+|+.||++.|-+.+...... +..+..|+ +|.++|++..+
T Consensus 244 l~tL~---gie~LksL~~LDlsyNll~~hseL~p--LwsLs~L~~L~LeGNPl~c~p 295 (1096)
T KOG1859|consen 244 LTTLR---GIENLKSLYGLDLSYNLLSEHSELEP--LWSLSSLIVLWLEGNPLCCAP 295 (1096)
T ss_pred HHhhh---hHHhhhhhhccchhHhhhhcchhhhH--HHHHHHHHHHhhcCCccccCH
Confidence 99876 48899999999999998887754321 12344444 56778877443
No 38
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.92 E-value=2.9e-10 Score=90.13 Aligned_cols=148 Identities=24% Similarity=0.328 Sum_probs=109.4
Q ss_pred ccEEEeecCCCc---cchhhhcCCCCCcEEEcccCCCcc----cc----------------------ccccCCccCCEEe
Q 027557 7 DCPAVLSRNPIR---EIGDSLLNMKAITKLSLSNCQVQI----IG----------------------SSLKSCTELKELR 57 (222)
Q Consensus 7 ~~~L~L~~n~l~---~lp~~~~~l~~L~~L~L~~n~i~~----lp----------------------~~~~~l~~L~~L~ 57 (222)
++.|||.+|.|+ +|..-+.+||.|++|+|++|.+.. +| ..+..+|.++.|.
T Consensus 73 v~elDL~~N~iSdWseI~~ile~lP~l~~LNls~N~L~s~I~~lp~p~~nl~~lVLNgT~L~w~~~~s~l~~lP~vtelH 152 (418)
T KOG2982|consen 73 VKELDLTGNLISDWSEIGAILEQLPALTTLNLSCNSLSSDIKSLPLPLKNLRVLVLNGTGLSWTQSTSSLDDLPKVTELH 152 (418)
T ss_pred hhhhhcccchhccHHHHHHHHhcCccceEeeccCCcCCCccccCcccccceEEEEEcCCCCChhhhhhhhhcchhhhhhh
Confidence 467899999998 455566889999999999998765 33 0123355666666
Q ss_pred cccCcCCcC--------------------c-----------------------------------hhhhCCCCCceeecc
Q 027557 58 LAHNDIKTL--------------------P-----------------------------------AELAFNKKLQNLDLG 82 (222)
Q Consensus 58 l~~N~i~~l--------------------p-----------------------------------~~~~~l~~L~~L~L~ 82 (222)
++.|.+..+ | .++..++.+-.|+|+
T Consensus 153 mS~N~~rq~n~Dd~c~e~~s~~v~tlh~~~c~~~~w~~~~~l~r~Fpnv~sv~v~e~PlK~~s~ek~se~~p~~~~LnL~ 232 (418)
T KOG2982|consen 153 MSDNSLRQLNLDDNCIEDWSTEVLTLHQLPCLEQLWLNKNKLSRIFPNVNSVFVCEGPLKTESSEKGSEPFPSLSCLNLG 232 (418)
T ss_pred hccchhhhhccccccccccchhhhhhhcCCcHHHHHHHHHhHHhhcccchheeeecCcccchhhcccCCCCCcchhhhhc
Confidence 666632110 0 123356777889999
Q ss_pred CCccCCCcchHhhcCCCCCCEEEeeCCCCCCch---hHHHHHHHhCCccccccCCCCChhhHhhhHHHHhhhcCC
Q 027557 83 KNLITRWSELKVLKSLVSLNNLNLQGNPVAEYD---KLAKKVKNLLPSLHIFNARPINRITKNEKDNIVDKVNDS 154 (222)
Q Consensus 83 ~N~i~~~~~~~~~~~l~~L~~L~l~~N~l~~~~---~~~~~~~~~l~~L~~l~~~~~~~~~~~~~~~~~~~~~~~ 154 (222)
.|+|.+|..++.+.+++.|..|.+.+||+.+.- .-+.-+++++++++.|++..+...++.....++..+...
T Consensus 233 ~~~idswasvD~Ln~f~~l~dlRv~~~Pl~d~l~~~err~llIaRL~~v~vLNGskIss~er~dSEr~fVRyym~ 307 (418)
T KOG2982|consen 233 ANNIDSWASVDALNGFPQLVDLRVSENPLSDPLRGGERRFLLIARLTKVQVLNGSKISSRERKDSERRFVRYYMS 307 (418)
T ss_pred ccccccHHHHHHHcCCchhheeeccCCcccccccCCcceEEEEeeccceEEecCcccchhhhhhhHHHHHHHHhh
Confidence 999999999999999999999999999986541 123346778999999999999988888887777666544
No 39
>PLN03150 hypothetical protein; Provisional
Probab=98.91 E-value=2.7e-09 Score=95.32 Aligned_cols=85 Identities=29% Similarity=0.369 Sum_probs=76.5
Q ss_pred CCcEEEcccCCCcc-ccccccCCccCCEEecccCcCC-cCchhhhCCCCCceeeccCCccCCCcchHhhcCCCCCCEEEe
Q 027557 29 AITKLSLSNCQVQI-IGSSLKSCTELKELRLAHNDIK-TLPAELAFNKKLQNLDLGKNLITRWSELKVLKSLVSLNNLNL 106 (222)
Q Consensus 29 ~L~~L~L~~n~i~~-lp~~~~~l~~L~~L~l~~N~i~-~lp~~~~~l~~L~~L~L~~N~i~~~~~~~~~~~l~~L~~L~l 106 (222)
.++.|+|++|.++. +|..+..+++|+.|+|++|.++ .+|..+..+++|+.|+|++|.+++..+ ..++.+++|+.|+|
T Consensus 419 ~v~~L~L~~n~L~g~ip~~i~~L~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~iP-~~l~~L~~L~~L~L 497 (623)
T PLN03150 419 FIDGLGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIP-ESLGQLTSLRILNL 497 (623)
T ss_pred EEEEEECCCCCccccCCHHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECCCCCCCCCCc-hHHhcCCCCCEEEC
Confidence 37889999999986 8877999999999999999998 889889999999999999999986444 48999999999999
Q ss_pred eCCCCCCc
Q 027557 107 QGNPVAEY 114 (222)
Q Consensus 107 ~~N~l~~~ 114 (222)
++|.+.+.
T Consensus 498 s~N~l~g~ 505 (623)
T PLN03150 498 NGNSLSGR 505 (623)
T ss_pred cCCccccc
Confidence 99998744
No 40
>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]
Probab=98.90 E-value=1.2e-10 Score=82.33 Aligned_cols=110 Identities=21% Similarity=0.223 Sum_probs=90.9
Q ss_pred CCCccEEEeecCCCccchhhhc-CCCCCcEEEcccCCCccccccccCCccCCEEecccCcCCcCchhhhCCCCCceeecc
Q 027557 4 GIRDCPAVLSRNPIREIGDSLL-NMKAITKLSLSNCQVQIIGSSLKSCTELKELRLAHNDIKTLPAELAFNKKLQNLDLG 82 (222)
Q Consensus 4 ~~~~~~L~L~~n~l~~lp~~~~-~l~~L~~L~L~~n~i~~lp~~~~~l~~L~~L~l~~N~i~~lp~~~~~l~~L~~L~L~ 82 (222)
+..++..+|++|.+..+|+.|. .++.++.|+|++|.|+.+|..+..++.|+.|+++.|.+...|..+..+.+|-.|+..
T Consensus 52 ~~el~~i~ls~N~fk~fp~kft~kf~t~t~lNl~~neisdvPeE~Aam~aLr~lNl~~N~l~~~p~vi~~L~~l~~Lds~ 131 (177)
T KOG4579|consen 52 GYELTKISLSDNGFKKFPKKFTIKFPTATTLNLANNEISDVPEELAAMPALRSLNLRFNPLNAEPRVIAPLIKLDMLDSP 131 (177)
T ss_pred CceEEEEecccchhhhCCHHHhhccchhhhhhcchhhhhhchHHHhhhHHhhhcccccCccccchHHHHHHHhHHHhcCC
Confidence 4455678999999999998774 577999999999999999988999999999999999999998888889999999999
Q ss_pred CCccCCCcchHhhcCCCCCCEEEeeCCCCCCch
Q 027557 83 KNLITRWSELKVLKSLVSLNNLNLQGNPVAEYD 115 (222)
Q Consensus 83 ~N~i~~~~~~~~~~~l~~L~~L~l~~N~l~~~~ 115 (222)
+|.+..++. . +-.-...-...++++|+.+-+
T Consensus 132 ~na~~eid~-d-l~~s~~~al~~lgnepl~~~~ 162 (177)
T KOG4579|consen 132 ENARAEIDV-D-LFYSSLPALIKLGNEPLGDET 162 (177)
T ss_pred CCccccCcH-H-HhccccHHHHHhcCCcccccC
Confidence 999999886 3 222222333455777887654
No 41
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]
Probab=98.88 E-value=2.2e-10 Score=94.74 Aligned_cols=120 Identities=21% Similarity=0.299 Sum_probs=67.8
Q ss_pred CCCCcEEEcccCCCccccc--cccCCccCCEEecccCcCCcC--chh-----hhCCCCCceeeccCCccCCCcchHhhcC
Q 027557 27 MKAITKLSLSNCQVQIIGS--SLKSCTELKELRLAHNDIKTL--PAE-----LAFNKKLQNLDLGKNLITRWSELKVLKS 97 (222)
Q Consensus 27 l~~L~~L~L~~n~i~~lp~--~~~~l~~L~~L~l~~N~i~~l--p~~-----~~~l~~L~~L~L~~N~i~~~~~~~~~~~ 97 (222)
+..|+.|||++|.+-..+. ..+.++.|..|+++.+.|+++ |+. ...+++|++|++..|+|.+|+.+..+..
T Consensus 245 ~~~L~~LdLs~N~li~~~~~~~~~~l~~L~~Lnls~tgi~si~~~d~~s~~kt~~f~kL~~L~i~~N~I~~w~sl~~l~~ 324 (505)
T KOG3207|consen 245 LQTLQELDLSNNNLIDFDQGYKVGTLPGLNQLNLSSTGIASIAEPDVESLDKTHTFPKLEYLNISENNIRDWRSLNHLRT 324 (505)
T ss_pred hhHHhhccccCCcccccccccccccccchhhhhccccCcchhcCCCccchhhhcccccceeeecccCccccccccchhhc
Confidence 3445555555555555442 245566666666666666633 322 2345666777777777766666666666
Q ss_pred CCCCCEEEeeCCCCCCchh-HHHHHHHhCCccccccCCCCChhhHhhhHH
Q 027557 98 LVSLNNLNLQGNPVAEYDK-LAKKVKNLLPSLHIFNARPINRITKNEKDN 146 (222)
Q Consensus 98 l~~L~~L~l~~N~l~~~~~-~~~~~~~~l~~L~~l~~~~~~~~~~~~~~~ 146 (222)
+++|++|.+..|+++.-.. ....+++.++++..|+...+...++..+..
T Consensus 325 l~nlk~l~~~~n~ln~e~~~a~~~VIAr~~~l~~LN~~di~p~eRR~AEl 374 (505)
T KOG3207|consen 325 LENLKHLRITLNYLNKETDTAKLLVIARISQLVKLNDVDISPNERRDAEL 374 (505)
T ss_pred cchhhhhhcccccccccccceeEEeeeehhhhhhhcccccChHHhhhhhh
Confidence 6666666666666654321 111244556666666666666555555443
No 42
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]
Probab=98.86 E-value=5.1e-10 Score=95.47 Aligned_cols=106 Identities=32% Similarity=0.355 Sum_probs=67.6
Q ss_pred ccEEEeecCCCccchhhhcCCCCCcEEEcccCCCccccccccCCccCCEEecccCcCCcCchhhhCCCCCceeeccCCcc
Q 027557 7 DCPAVLSRNPIREIGDSLLNMKAITKLSLSNCQVQIIGSSLKSCTELKELRLAHNDIKTLPAELAFNKKLQNLDLGKNLI 86 (222)
Q Consensus 7 ~~~L~L~~n~l~~lp~~~~~l~~L~~L~L~~n~i~~lp~~~~~l~~L~~L~l~~N~i~~lp~~~~~l~~L~~L~L~~N~i 86 (222)
+..|++..|.|..+...+..+++|++|+|++|.|+.+. ++..++.|+.|++++|.|+.+ .++..++.|+.+++++|++
T Consensus 97 l~~l~l~~n~i~~i~~~l~~~~~L~~L~ls~N~I~~i~-~l~~l~~L~~L~l~~N~i~~~-~~~~~l~~L~~l~l~~n~i 174 (414)
T KOG0531|consen 97 LEALDLYDNKIEKIENLLSSLVNLQVLDLSFNKITKLE-GLSTLTLLKELNLSGNLISDI-SGLESLKSLKLLDLSYNRI 174 (414)
T ss_pred eeeeeccccchhhcccchhhhhcchheecccccccccc-chhhccchhhheeccCcchhc-cCCccchhhhcccCCcchh
Confidence 35666777777766433666677777777777777665 456666677777777777666 3555566677777777776
Q ss_pred CCCcchHhhcCCCCCCEEEeeCCCCCCch
Q 027557 87 TRWSELKVLKSLVSLNNLNLQGNPVAEYD 115 (222)
Q Consensus 87 ~~~~~~~~~~~l~~L~~L~l~~N~l~~~~ 115 (222)
..+.... ...+.+++.+++.+|.+..+.
T Consensus 175 ~~ie~~~-~~~~~~l~~l~l~~n~i~~i~ 202 (414)
T KOG0531|consen 175 VDIENDE-LSELISLEELDLGGNSIREIE 202 (414)
T ss_pred hhhhhhh-hhhccchHHHhccCCchhccc
Confidence 6654310 356666666777776665554
No 43
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=98.84 E-value=1.2e-08 Score=97.17 Aligned_cols=118 Identities=19% Similarity=0.340 Sum_probs=90.9
Q ss_pred CccEEEeecCC-CccchhhhcCCCCCcEEEcccC-CCccccccccCCccCCEEecccCc-CCcCchhhhCCCCCceeecc
Q 027557 6 RDCPAVLSRNP-IREIGDSLLNMKAITKLSLSNC-QVQIIGSSLKSCTELKELRLAHND-IKTLPAELAFNKKLQNLDLG 82 (222)
Q Consensus 6 ~~~~L~L~~n~-l~~lp~~~~~l~~L~~L~L~~n-~i~~lp~~~~~l~~L~~L~l~~N~-i~~lp~~~~~l~~L~~L~L~ 82 (222)
.++.|+|++|. +..+|..+.++++|+.|+|++| .+..+|..+ .+++|+.|++++|. +..+|.. ..+|+.|+|+
T Consensus 779 sL~~L~Ls~n~~l~~lP~si~~L~~L~~L~Ls~C~~L~~LP~~~-~L~sL~~L~Ls~c~~L~~~p~~---~~nL~~L~Ls 854 (1153)
T PLN03210 779 SLTRLFLSDIPSLVELPSSIQNLHKLEHLEIENCINLETLPTGI-NLESLESLDLSGCSRLRTFPDI---STNISDLNLS 854 (1153)
T ss_pred cchheeCCCCCCccccChhhhCCCCCCEEECCCCCCcCeeCCCC-CccccCEEECCCCCcccccccc---ccccCEeECC
Confidence 56789999986 5578999999999999999987 577788665 78899999999864 5566532 3678999999
Q ss_pred CCccCCCcchHhhcCCCCCCEEEeeC-CCCCCchhHHHHHHHhCCccccccC
Q 027557 83 KNLITRWSELKVLKSLVSLNNLNLQG-NPVAEYDKLAKKVKNLLPSLHIFNA 133 (222)
Q Consensus 83 ~N~i~~~~~~~~~~~l~~L~~L~l~~-N~l~~~~~~~~~~~~~l~~L~~l~~ 133 (222)
+|.|..+|. .+..+++|+.|++++ |.+..++.. ...++.|+.++.
T Consensus 855 ~n~i~~iP~--si~~l~~L~~L~L~~C~~L~~l~~~----~~~L~~L~~L~l 900 (1153)
T PLN03210 855 RTGIEEVPW--WIEKFSNLSFLDMNGCNNLQRVSLN----ISKLKHLETVDF 900 (1153)
T ss_pred CCCCccChH--HHhcCCCCCEEECCCCCCcCccCcc----cccccCCCeeec
Confidence 999999886 788899999999988 457766542 234555655543
No 44
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=98.79 E-value=7.6e-09 Score=59.35 Aligned_cols=35 Identities=31% Similarity=0.456 Sum_probs=13.0
Q ss_pred CcEEEcccCCCccccccccCCccCCEEecccCcCC
Q 027557 30 ITKLSLSNCQVQIIGSSLKSCTELKELRLAHNDIK 64 (222)
Q Consensus 30 L~~L~L~~n~i~~lp~~~~~l~~L~~L~l~~N~i~ 64 (222)
|++|++++|+|+.+|+.+..+++|++|++++|+|+
T Consensus 3 L~~L~l~~N~i~~l~~~l~~l~~L~~L~l~~N~i~ 37 (44)
T PF12799_consen 3 LEELDLSNNQITDLPPELSNLPNLETLNLSNNPIS 37 (44)
T ss_dssp -SEEEETSSS-SSHGGHGTTCTTSSEEEETSSCCS
T ss_pred ceEEEccCCCCcccCchHhCCCCCCEEEecCCCCC
Confidence 33444444444443333333444444444444333
No 45
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]
Probab=98.79 E-value=1.3e-09 Score=92.96 Aligned_cols=117 Identities=31% Similarity=0.343 Sum_probs=98.3
Q ss_pred cEEEeecCCCccchhhhcCCCCCcEEEcccCCCccccccccCCccCCEEecccCcCCcCchhhhCCCCCceeeccCCccC
Q 027557 8 CPAVLSRNPIREIGDSLLNMKAITKLSLSNCQVQIIGSSLKSCTELKELRLAHNDIKTLPAELAFNKKLQNLDLGKNLIT 87 (222)
Q Consensus 8 ~~L~L~~n~l~~lp~~~~~l~~L~~L~L~~n~i~~lp~~~~~l~~L~~L~l~~N~i~~lp~~~~~l~~L~~L~L~~N~i~ 87 (222)
..+.+..|.|.++-..+..+.+|+.|++..|.|..+...+..+++|++|++++|.|+.+ .++..++.|+.|++++|.|.
T Consensus 75 ~~l~l~~n~i~~~~~~l~~~~~l~~l~l~~n~i~~i~~~l~~~~~L~~L~ls~N~I~~i-~~l~~l~~L~~L~l~~N~i~ 153 (414)
T KOG0531|consen 75 KELNLRQNLIAKILNHLSKLKSLEALDLYDNKIEKIENLLSSLVNLQVLDLSFNKITKL-EGLSTLTLLKELNLSGNLIS 153 (414)
T ss_pred Hhhccchhhhhhhhcccccccceeeeeccccchhhcccchhhhhcchheeccccccccc-cchhhccchhhheeccCcch
Confidence 45668888888864568899999999999999999985589999999999999999999 57888889999999999999
Q ss_pred CCcchHhhcCCCCCCEEEeeCCCCCCchhHHHHHHHhCCccccc
Q 027557 88 RWSELKVLKSLVSLNNLNLQGNPVAEYDKLAKKVKNLLPSLHIF 131 (222)
Q Consensus 88 ~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~l 131 (222)
.+.. +..++.|+.+++++|.+..+... . ...+..++.+
T Consensus 154 ~~~~---~~~l~~L~~l~l~~n~i~~ie~~--~-~~~~~~l~~l 191 (414)
T KOG0531|consen 154 DISG---LESLKSLKLLDLSYNRIVDIEND--E-LSELISLEEL 191 (414)
T ss_pred hccC---CccchhhhcccCCcchhhhhhhh--h-hhhccchHHH
Confidence 9875 67799999999999999988762 0 2355555544
No 46
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=98.78 E-value=8.3e-09 Score=59.20 Aligned_cols=41 Identities=39% Similarity=0.549 Sum_probs=26.4
Q ss_pred ccCCEEecccCcCCcCchhhhCCCCCceeeccCCccCCCcc
Q 027557 51 TELKELRLAHNDIKTLPAELAFNKKLQNLDLGKNLITRWSE 91 (222)
Q Consensus 51 ~~L~~L~l~~N~i~~lp~~~~~l~~L~~L~L~~N~i~~~~~ 91 (222)
++|++|++++|+|+.+|..+..|++|+.|++++|+|+++++
T Consensus 1 ~~L~~L~l~~N~i~~l~~~l~~l~~L~~L~l~~N~i~~i~~ 41 (44)
T PF12799_consen 1 KNLEELDLSNNQITDLPPELSNLPNLETLNLSNNPISDISP 41 (44)
T ss_dssp TT-SEEEETSSS-SSHGGHGTTCTTSSEEEETSSCCSBEGG
T ss_pred CcceEEEccCCCCcccCchHhCCCCCCEEEecCCCCCCCcC
Confidence 35677777777777776556777777777777777766554
No 47
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]
Probab=98.74 E-value=9.2e-09 Score=77.33 Aligned_cols=100 Identities=31% Similarity=0.350 Sum_probs=84.8
Q ss_pred cEEEeecCCCccchhhhcCCCCCcEEEcccCCCccccccc-cCCccCCEEecccCcCCcCch--hhhCCCCCceeeccCC
Q 027557 8 CPAVLSRNPIREIGDSLLNMKAITKLSLSNCQVQIIGSSL-KSCTELKELRLAHNDIKTLPA--ELAFNKKLQNLDLGKN 84 (222)
Q Consensus 8 ~~L~L~~n~l~~lp~~~~~l~~L~~L~L~~n~i~~lp~~~-~~l~~L~~L~l~~N~i~~lp~--~~~~l~~L~~L~L~~N 84 (222)
..+||+.|.|..+ +.|..++.|.+|.|++|+|+.|.+.+ ..+++|+.|.|.+|.|..+.+ .+..++.|++|.+-+|
T Consensus 45 d~iDLtdNdl~~l-~~lp~l~rL~tLll~nNrIt~I~p~L~~~~p~l~~L~LtnNsi~~l~dl~pLa~~p~L~~Ltll~N 123 (233)
T KOG1644|consen 45 DAIDLTDNDLRKL-DNLPHLPRLHTLLLNNNRITRIDPDLDTFLPNLKTLILTNNSIQELGDLDPLASCPKLEYLTLLGN 123 (233)
T ss_pred ceecccccchhhc-ccCCCccccceEEecCCcceeeccchhhhccccceEEecCcchhhhhhcchhccCCccceeeecCC
Confidence 4689999999988 57889999999999999999998875 456789999999999997633 4778899999999999
Q ss_pred ccCCCcch--HhhcCCCCCCEEEeeC
Q 027557 85 LITRWSEL--KVLKSLVSLNNLNLQG 108 (222)
Q Consensus 85 ~i~~~~~~--~~~~~l~~L~~L~l~~ 108 (222)
.+...... -.+..+|+|+.||+.+
T Consensus 124 pv~~k~~YR~yvl~klp~l~~LDF~k 149 (233)
T KOG1644|consen 124 PVEHKKNYRLYVLYKLPSLRTLDFQK 149 (233)
T ss_pred chhcccCceeEEEEecCcceEeehhh
Confidence 99876532 3577899999999765
No 48
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=98.73 E-value=4.2e-08 Score=93.44 Aligned_cols=105 Identities=16% Similarity=0.302 Sum_probs=61.7
Q ss_pred ccEEEeecCCCccchhhhcCCCCCcEEEcccCCCccccccccCCccCCEEecccCc-CCcCchhhhCCCCCceeeccCC-
Q 027557 7 DCPAVLSRNPIREIGDSLLNMKAITKLSLSNCQVQIIGSSLKSCTELKELRLAHND-IKTLPAELAFNKKLQNLDLGKN- 84 (222)
Q Consensus 7 ~~~L~L~~n~l~~lp~~~~~l~~L~~L~L~~n~i~~lp~~~~~l~~L~~L~l~~N~-i~~lp~~~~~l~~L~~L~L~~N- 84 (222)
++.|++.++.++.+|..| ...+|+.|++++|.|..++.++..+++|++|+|+++. ++.+| .+..+++|+.|+|++|
T Consensus 591 Lr~L~~~~~~l~~lP~~f-~~~~L~~L~L~~s~l~~L~~~~~~l~~Lk~L~Ls~~~~l~~ip-~ls~l~~Le~L~L~~c~ 668 (1153)
T PLN03210 591 LRLLRWDKYPLRCMPSNF-RPENLVKLQMQGSKLEKLWDGVHSLTGLRNIDLRGSKNLKEIP-DLSMATNLETLKLSDCS 668 (1153)
T ss_pred cEEEEecCCCCCCCCCcC-CccCCcEEECcCccccccccccccCCCCCEEECCCCCCcCcCC-ccccCCcccEEEecCCC
Confidence 456666666666666554 3566666666666666666556666666666666543 44554 3555666666666654
Q ss_pred ccCCCcchHhhcCCCCCCEEEeeCC-CCCCch
Q 027557 85 LITRWSELKVLKSLVSLNNLNLQGN-PVAEYD 115 (222)
Q Consensus 85 ~i~~~~~~~~~~~l~~L~~L~l~~N-~l~~~~ 115 (222)
.+..+|. .++.+++|+.|++++| .+..+|
T Consensus 669 ~L~~lp~--si~~L~~L~~L~L~~c~~L~~Lp 698 (1153)
T PLN03210 669 SLVELPS--SIQYLNKLEDLDMSRCENLEILP 698 (1153)
T ss_pred Cccccch--hhhccCCCCEEeCCCCCCcCccC
Confidence 3444554 5566666666666654 344443
No 49
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=98.72 E-value=1.6e-08 Score=93.02 Aligned_cols=104 Identities=27% Similarity=0.270 Sum_probs=80.2
Q ss_pred CccEEEeecCC--Cccchh-hhcCCCCCcEEEcccCC-CccccccccCCccCCEEecccCcCCcCchhhhCCCCCceeec
Q 027557 6 RDCPAVLSRNP--IREIGD-SLLNMKAITKLSLSNCQ-VQIIGSSLKSCTELKELRLAHNDIKTLPAELAFNKKLQNLDL 81 (222)
Q Consensus 6 ~~~~L~L~~n~--l~~lp~-~~~~l~~L~~L~L~~n~-i~~lp~~~~~l~~L~~L~l~~N~i~~lp~~~~~l~~L~~L~L 81 (222)
.+++|-+..|. +..++. .|..|+.|++|||++|. +..+|..++.+.+|++|++++..|+.+|.++..+..|.+|++
T Consensus 546 ~L~tLll~~n~~~l~~is~~ff~~m~~LrVLDLs~~~~l~~LP~~I~~Li~LryL~L~~t~I~~LP~~l~~Lk~L~~Lnl 625 (889)
T KOG4658|consen 546 KLRTLLLQRNSDWLLEISGEFFRSLPLLRVLDLSGNSSLSKLPSSIGELVHLRYLDLSDTGISHLPSGLGNLKKLIYLNL 625 (889)
T ss_pred ccceEEEeecchhhhhcCHHHHhhCcceEEEECCCCCccCcCChHHhhhhhhhcccccCCCccccchHHHHHHhhheecc
Confidence 46778888886 666654 46778899999998765 667888888888999999999988888888888888999988
Q ss_pred cCCccCCCcchHhhcCCCCCCEEEeeCCC
Q 027557 82 GKNLITRWSELKVLKSLVSLNNLNLQGNP 110 (222)
Q Consensus 82 ~~N~i~~~~~~~~~~~l~~L~~L~l~~N~ 110 (222)
..+.-....+ .....+.+|++|.+....
T Consensus 626 ~~~~~l~~~~-~i~~~L~~Lr~L~l~~s~ 653 (889)
T KOG4658|consen 626 EVTGRLESIP-GILLELQSLRVLRLPRSA 653 (889)
T ss_pred cccccccccc-chhhhcccccEEEeeccc
Confidence 8775433333 356668888888887655
No 50
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]
Probab=98.61 E-value=1.4e-08 Score=84.24 Aligned_cols=124 Identities=22% Similarity=0.278 Sum_probs=85.0
Q ss_pred ccEEEeecCCCc--cchhhhcCCCCCcEEEcccCCCcccc-ccccCCccCCEEecccCcCCcCc--hhhhCCCCCceeec
Q 027557 7 DCPAVLSRNPIR--EIGDSLLNMKAITKLSLSNCQVQIIG-SSLKSCTELKELRLAHNDIKTLP--AELAFNKKLQNLDL 81 (222)
Q Consensus 7 ~~~L~L~~n~l~--~lp~~~~~l~~L~~L~L~~n~i~~lp-~~~~~l~~L~~L~l~~N~i~~lp--~~~~~l~~L~~L~L 81 (222)
++.|.|++|+|+ .+..-+..+|+|..|+|..|....+- ....-+..|+.|||++|.+-..+ ...+.++.|..|++
T Consensus 199 lK~L~l~~CGls~k~V~~~~~~fPsl~~L~L~~N~~~~~~~~~~~i~~~L~~LdLs~N~li~~~~~~~~~~l~~L~~Lnl 278 (505)
T KOG3207|consen 199 LKQLVLNSCGLSWKDVQWILLTFPSLEVLYLEANEIILIKATSTKILQTLQELDLSNNNLIDFDQGYKVGTLPGLNQLNL 278 (505)
T ss_pred hheEEeccCCCCHHHHHHHHHhCCcHHHhhhhcccccceecchhhhhhHHhhccccCCcccccccccccccccchhhhhc
Confidence 356777777777 34445567788888888888522221 12445677888999988887665 34778888999999
Q ss_pred cCCccCCCcchHh-----hcCCCCCCEEEeeCCCCCCchhHHHHHHHhCCcccccc
Q 027557 82 GKNLITRWSELKV-----LKSLVSLNNLNLQGNPVAEYDKLAKKVKNLLPSLHIFN 132 (222)
Q Consensus 82 ~~N~i~~~~~~~~-----~~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~l~ 132 (222)
+.+.|.++...+. ...+++|++|++..|++.+++..-. +..+++|+.+.
T Consensus 279 s~tgi~si~~~d~~s~~kt~~f~kL~~L~i~~N~I~~w~sl~~--l~~l~nlk~l~ 332 (505)
T KOG3207|consen 279 SSTGIASIAEPDVESLDKTHTFPKLEYLNISENNIRDWRSLNH--LRTLENLKHLR 332 (505)
T ss_pred cccCcchhcCCCccchhhhcccccceeeecccCccccccccch--hhccchhhhhh
Confidence 9888887653222 3568899999999999888765422 23566666554
No 51
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=98.57 E-value=4.3e-08 Score=90.15 Aligned_cols=122 Identities=24% Similarity=0.226 Sum_probs=100.4
Q ss_pred CccEEEeecCCCccchhhhcCCCCCcEEEcccCC--Ccccccc-ccCCccCCEEecccCc-CCcCchhhhCCCCCceeec
Q 027557 6 RDCPAVLSRNPIREIGDSLLNMKAITKLSLSNCQ--VQIIGSS-LKSCTELKELRLAHND-IKTLPAELAFNKKLQNLDL 81 (222)
Q Consensus 6 ~~~~L~L~~n~l~~lp~~~~~l~~L~~L~L~~n~--i~~lp~~-~~~l~~L~~L~l~~N~-i~~lp~~~~~l~~L~~L~L 81 (222)
..|.+.+.+|.+..++... ..+.|++|-+..|. +..++.. |..++.|++|||++|. +..+|.+++.+.+|++|++
T Consensus 524 ~~rr~s~~~~~~~~~~~~~-~~~~L~tLll~~n~~~l~~is~~ff~~m~~LrVLDLs~~~~l~~LP~~I~~Li~LryL~L 602 (889)
T KOG4658|consen 524 SVRRMSLMNNKIEHIAGSS-ENPKLRTLLLQRNSDWLLEISGEFFRSLPLLRVLDLSGNSSLSKLPSSIGELVHLRYLDL 602 (889)
T ss_pred heeEEEEeccchhhccCCC-CCCccceEEEeecchhhhhcCHHHHhhCcceEEEECCCCCccCcCChHHhhhhhhhcccc
Confidence 3477889999998886654 34589999999997 7777766 7889999999999884 6799999999999999999
Q ss_pred cCCccCCCcchHhhcCCCCCCEEEeeCCCC-CCchhHHHHHHHhCCccccccCC
Q 027557 82 GKNLITRWSELKVLKSLVSLNNLNLQGNPV-AEYDKLAKKVKNLLPSLHIFNAR 134 (222)
Q Consensus 82 ~~N~i~~~~~~~~~~~l~~L~~L~l~~N~l-~~~~~~~~~~~~~l~~L~~l~~~ 134 (222)
++..|..+|. .++.+..|.+|++..+.- ...+. +...+++|++|...
T Consensus 603 ~~t~I~~LP~--~l~~Lk~L~~Lnl~~~~~l~~~~~----i~~~L~~Lr~L~l~ 650 (889)
T KOG4658|consen 603 SDTGISHLPS--GLGNLKKLIYLNLEVTGRLESIPG----ILLELQSLRVLRLP 650 (889)
T ss_pred cCCCccccch--HHHHHHhhheeccccccccccccc----hhhhcccccEEEee
Confidence 9999999998 999999999999998753 33322 44568888887554
No 52
>KOG2123 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.34 E-value=4.9e-08 Score=76.99 Aligned_cols=97 Identities=29% Similarity=0.262 Sum_probs=80.6
Q ss_pred ccEEEeecCCCccchhhhcCCCCCcEEEcccCCCccccccccCCccCCEEecccCcCCcCch--hhhCCCCCceeeccCC
Q 027557 7 DCPAVLSRNPIREIGDSLLNMKAITKLSLSNCQVQIIGSSLKSCTELKELRLAHNDIKTLPA--ELAFNKKLQNLDLGKN 84 (222)
Q Consensus 7 ~~~L~L~~n~l~~lp~~~~~l~~L~~L~L~~n~i~~lp~~~~~l~~L~~L~l~~N~i~~lp~--~~~~l~~L~~L~L~~N 84 (222)
++.|++.++.|+.| .....|+.|++|.||-|.|+.+. .+..+++|+.|+|..|.|.++.. -+.++++|+.|+|..|
T Consensus 21 vkKLNcwg~~L~DI-sic~kMp~lEVLsLSvNkIssL~-pl~rCtrLkElYLRkN~I~sldEL~YLknlpsLr~LWL~EN 98 (388)
T KOG2123|consen 21 VKKLNCWGCGLDDI-SICEKMPLLEVLSLSVNKISSLA-PLQRCTRLKELYLRKNCIESLDELEYLKNLPSLRTLWLDEN 98 (388)
T ss_pred hhhhcccCCCccHH-HHHHhcccceeEEeeccccccch-hHHHHHHHHHHHHHhcccccHHHHHHHhcCchhhhHhhccC
Confidence 36789999999987 45578999999999999999987 58999999999999999998743 3778999999999998
Q ss_pred ccCCCcc----hHhhcCCCCCCEEE
Q 027557 85 LITRWSE----LKVLKSLVSLNNLN 105 (222)
Q Consensus 85 ~i~~~~~----~~~~~~l~~L~~L~ 105 (222)
.-.+-.. ...+.-+|+|+.||
T Consensus 99 PCc~~ag~nYR~~VLR~LPnLkKLD 123 (388)
T KOG2123|consen 99 PCCGEAGQNYRRKVLRVLPNLKKLD 123 (388)
T ss_pred CcccccchhHHHHHHHHcccchhcc
Confidence 6544221 14677899999987
No 53
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=98.28 E-value=1.3e-06 Score=78.61 Aligned_cols=130 Identities=17% Similarity=0.188 Sum_probs=97.8
Q ss_pred CccEEEeecCCCcc--chhhhc-CCCCCcEEEcccCCCcc--ccccccCCccCCEEecccCcCCcCchhhhCCCCCceee
Q 027557 6 RDCPAVLSRNPIRE--IGDSLL-NMKAITKLSLSNCQVQI--IGSSLKSCTELKELRLAHNDIKTLPAELAFNKKLQNLD 80 (222)
Q Consensus 6 ~~~~L~L~~n~l~~--lp~~~~-~l~~L~~L~L~~n~i~~--lp~~~~~l~~L~~L~l~~N~i~~lp~~~~~l~~L~~L~ 80 (222)
.++.|++++...-. =|..++ -+|.|+.|.+++-.+.. +-.-..++++|..||+|+..++.+ .+++.+.+|+.|.
T Consensus 123 nL~~LdI~G~~~~s~~W~~kig~~LPsL~sL~i~~~~~~~~dF~~lc~sFpNL~sLDIS~TnI~nl-~GIS~LknLq~L~ 201 (699)
T KOG3665|consen 123 NLQHLDISGSELFSNGWPKKIGTMLPSLRSLVISGRQFDNDDFSQLCASFPNLRSLDISGTNISNL-SGISRLKNLQVLS 201 (699)
T ss_pred hhhhcCccccchhhccHHHHHhhhCcccceEEecCceecchhHHHHhhccCccceeecCCCCccCc-HHHhccccHHHHh
Confidence 46788888866331 133444 58999999999987765 333367889999999999999998 6899999999999
Q ss_pred ccCCccCCCcchHhhcCCCCCCEEEeeCCCCCCchhH---HHHHHHhCCccccccCCCC
Q 027557 81 LGKNLITRWSELKVLKSLVSLNNLNLQGNPVAEYDKL---AKKVKNLLPSLHIFNARPI 136 (222)
Q Consensus 81 L~~N~i~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~---~~~~~~~l~~L~~l~~~~~ 136 (222)
+.+=.+.....+..+..+++|++||++.......+.. .......+|+|+.||.+..
T Consensus 202 mrnLe~e~~~~l~~LF~L~~L~vLDIS~~~~~~~~~ii~qYlec~~~LpeLrfLDcSgT 260 (699)
T KOG3665|consen 202 MRNLEFESYQDLIDLFNLKKLRVLDISRDKNNDDTKIIEQYLECGMVLPELRFLDCSGT 260 (699)
T ss_pred ccCCCCCchhhHHHHhcccCCCeeeccccccccchHHHHHHHHhcccCccccEEecCCc
Confidence 9887788777677888999999999998766555421 1123345899999988743
No 54
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=98.13 E-value=1.2e-06 Score=68.51 Aligned_cols=98 Identities=26% Similarity=0.258 Sum_probs=73.2
Q ss_pred cEEEeecCCCccchhhhcCCCCCcEEEcccC--CCcc-ccccccCCccCCEEecccCcCCcCc--hhhhCCCCCceeecc
Q 027557 8 CPAVLSRNPIREIGDSLLNMKAITKLSLSNC--QVQI-IGSSLKSCTELKELRLAHNDIKTLP--AELAFNKKLQNLDLG 82 (222)
Q Consensus 8 ~~L~L~~n~l~~lp~~~~~l~~L~~L~L~~n--~i~~-lp~~~~~l~~L~~L~l~~N~i~~lp--~~~~~l~~L~~L~L~ 82 (222)
..|.+.+..++.+ ..+..+++|++|.++.| +++. ++.....+++|++|++++|+|+.+. ..+..+.+|..|++.
T Consensus 46 e~ls~~n~gltt~-~~~P~Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~Nki~~lstl~pl~~l~nL~~Ldl~ 124 (260)
T KOG2739|consen 46 ELLSVINVGLTTL-TNFPKLPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGNKIKDLSTLRPLKELENLKSLDLF 124 (260)
T ss_pred hhhhhhccceeec-ccCCCcchhhhhcccCCcccccccceehhhhCCceeEEeecCCccccccccchhhhhcchhhhhcc
Confidence 4455666666665 56778999999999999 5554 5545566799999999999998542 236677889999999
Q ss_pred CCccCCCcch--HhhcCCCCCCEEEe
Q 027557 83 KNLITRWSEL--KVLKSLVSLNNLNL 106 (222)
Q Consensus 83 ~N~i~~~~~~--~~~~~l~~L~~L~l 106 (222)
.|....+..- ..|.-+++|++|+-
T Consensus 125 n~~~~~l~dyre~vf~ll~~L~~LD~ 150 (260)
T KOG2739|consen 125 NCSVTNLDDYREKVFLLLPSLKYLDG 150 (260)
T ss_pred cCCccccccHHHHHHHHhhhhccccc
Confidence 9987775533 56777888887764
No 55
>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]
Probab=98.02 E-value=7.7e-06 Score=66.46 Aligned_cols=129 Identities=20% Similarity=0.180 Sum_probs=83.8
Q ss_pred CccEEEeecCCCcc--c---hhhhcCCCCCcEEEcccCCCccccc--------------cccCCccCCEEecccCcCCcC
Q 027557 6 RDCPAVLSRNPIRE--I---GDSLLNMKAITKLSLSNCQVQIIGS--------------SLKSCTELKELRLAHNDIKTL 66 (222)
Q Consensus 6 ~~~~L~L~~n~l~~--l---p~~~~~l~~L~~L~L~~n~i~~lp~--------------~~~~l~~L~~L~l~~N~i~~l 66 (222)
.+++|+||.|.|.. + .+-+.++..|+.|.|.+|.+..... -...-+.|+++..++|++..-
T Consensus 93 ~L~~ldLSDNA~G~~g~~~l~~ll~s~~~L~eL~L~N~Glg~~ag~~l~~al~~l~~~kk~~~~~~Lrv~i~~rNrlen~ 172 (382)
T KOG1909|consen 93 KLQKLDLSDNAFGPKGIRGLEELLSSCTDLEELYLNNCGLGPEAGGRLGRALFELAVNKKAASKPKLRVFICGRNRLENG 172 (382)
T ss_pred ceeEeeccccccCccchHHHHHHHHhccCHHHHhhhcCCCChhHHHHHHHHHHHHHHHhccCCCcceEEEEeeccccccc
Confidence 67899999999872 2 2345678899999999998765221 134457788888888888754
Q ss_pred ch-----hhhCCCCCceeeccCCccCCCcc---hHhhcCCCCCCEEEeeCCCCCCch-hHHHHHHHhCCccccccCC
Q 027557 67 PA-----ELAFNKKLQNLDLGKNLITRWSE---LKVLKSLVSLNNLNLQGNPVAEYD-KLAKKVKNLLPSLHIFNAR 134 (222)
Q Consensus 67 p~-----~~~~l~~L~~L~L~~N~i~~~~~---~~~~~~l~~L~~L~l~~N~l~~~~-~~~~~~~~~l~~L~~l~~~ 134 (222)
+. .|...+.|+.+.++.|.|..-.. ...+..++.|+.|+|..|-++.-. .+.......+++|+.++..
T Consensus 173 ga~~~A~~~~~~~~leevr~~qN~I~~eG~~al~eal~~~~~LevLdl~DNtft~egs~~LakaL~s~~~L~El~l~ 249 (382)
T KOG1909|consen 173 GATALAEAFQSHPTLEEVRLSQNGIRPEGVTALAEALEHCPHLEVLDLRDNTFTLEGSVALAKALSSWPHLRELNLG 249 (382)
T ss_pred cHHHHHHHHHhccccceEEEecccccCchhHHHHHHHHhCCcceeeecccchhhhHHHHHHHHHhcccchheeeccc
Confidence 32 35556777777777777754221 145677788888888887765432 2233344445555544443
No 56
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=97.92 E-value=1.8e-05 Score=71.44 Aligned_cols=122 Identities=16% Similarity=0.229 Sum_probs=90.2
Q ss_pred ccEEEeecCCCcc--chhhhcCCCCCcEEEcccCCCccccccccCCccCCEEecccCcCCcCc--hhhhCCCCCceeecc
Q 027557 7 DCPAVLSRNPIRE--IGDSLLNMKAITKLSLSNCQVQIIGSSLKSCTELKELRLAHNDIKTLP--AELAFNKKLQNLDLG 82 (222)
Q Consensus 7 ~~~L~L~~n~l~~--lp~~~~~l~~L~~L~L~~n~i~~lp~~~~~l~~L~~L~l~~N~i~~lp--~~~~~l~~L~~L~L~ 82 (222)
+++|.+++-.+.. .-.-..++++|..||+|+..|+.+- +++.|++|+.|.+.+=.+..-. ..+..|.+|++||+|
T Consensus 150 L~sL~i~~~~~~~~dF~~lc~sFpNL~sLDIS~TnI~nl~-GIS~LknLq~L~mrnLe~e~~~~l~~LF~L~~L~vLDIS 228 (699)
T KOG3665|consen 150 LRSLVISGRQFDNDDFSQLCASFPNLRSLDISGTNISNLS-GISRLKNLQVLSMRNLEFESYQDLIDLFNLKKLRVLDIS 228 (699)
T ss_pred cceEEecCceecchhHHHHhhccCccceeecCCCCccCcH-HHhccccHHHHhccCCCCCchhhHHHHhcccCCCeeecc
Confidence 4778888877753 3344568999999999999999994 7999999999988877776432 358899999999999
Q ss_pred CCccCCCcch-----HhhcCCCCCCEEEeeCCCCCCchhHHHHHHHhCCccccc
Q 027557 83 KNLITRWSEL-----KVLKSLVSLNNLNLQGNPVAEYDKLAKKVKNLLPSLHIF 131 (222)
Q Consensus 83 ~N~i~~~~~~-----~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~l 131 (222)
......-+.+ +.-..+|+|+.||.+++-+... ....+...-|+|+.+
T Consensus 229 ~~~~~~~~~ii~qYlec~~~LpeLrfLDcSgTdi~~~--~le~ll~sH~~L~~i 280 (699)
T KOG3665|consen 229 RDKNNDDTKIIEQYLECGMVLPELRFLDCSGTDINEE--ILEELLNSHPNLQQI 280 (699)
T ss_pred ccccccchHHHHHHHHhcccCccccEEecCCcchhHH--HHHHHHHhCccHhhh
Confidence 8876665421 2334689999999998776653 233444555655544
No 57
>PRK15386 type III secretion protein GogB; Provisional
Probab=97.89 E-value=3.9e-05 Score=64.72 Aligned_cols=68 Identities=16% Similarity=0.292 Sum_probs=44.6
Q ss_pred ccEEEeecCCCccchhhhcCCCCCcEEEccc-CCCccccccccCCccCCEEecccC-cCCcCchhhhCCCCCceeeccCC
Q 027557 7 DCPAVLSRNPIREIGDSLLNMKAITKLSLSN-CQVQIIGSSLKSCTELKELRLAHN-DIKTLPAELAFNKKLQNLDLGKN 84 (222)
Q Consensus 7 ~~~L~L~~n~l~~lp~~~~~l~~L~~L~L~~-n~i~~lp~~~~~l~~L~~L~l~~N-~i~~lp~~~~~l~~L~~L~L~~N 84 (222)
++.|++++|.|+.+|. --.+|+.|.+++ +.++.+|..+ .++|++|++++| .+..+|. +|+.|++.+|
T Consensus 54 l~~L~Is~c~L~sLP~---LP~sLtsL~Lsnc~nLtsLP~~L--P~nLe~L~Ls~Cs~L~sLP~------sLe~L~L~~n 122 (426)
T PRK15386 54 SGRLYIKDCDIESLPV---LPNELTEITIENCNNLTTLPGSI--PEGLEKLTVCHCPEISGLPE------SVRSLEIKGS 122 (426)
T ss_pred CCEEEeCCCCCcccCC---CCCCCcEEEccCCCCcccCCchh--hhhhhheEccCccccccccc------ccceEEeCCC
Confidence 4689999999988872 223688888876 4566677444 257788888877 5666653 3444555444
Q ss_pred c
Q 027557 85 L 85 (222)
Q Consensus 85 ~ 85 (222)
.
T Consensus 123 ~ 123 (426)
T PRK15386 123 A 123 (426)
T ss_pred C
Confidence 3
No 58
>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]
Probab=97.82 E-value=3.5e-05 Score=62.76 Aligned_cols=132 Identities=22% Similarity=0.303 Sum_probs=77.8
Q ss_pred CCccEEEeecCCCcc-----chhhhcCCCCCcEEEcccCCCcc-----ccccccCCccCCEEecccCcCCcC-----chh
Q 027557 5 IRDCPAVLSRNPIRE-----IGDSLLNMKAITKLSLSNCQVQI-----IGSSLKSCTELKELRLAHNDIKTL-----PAE 69 (222)
Q Consensus 5 ~~~~~L~L~~n~l~~-----lp~~~~~l~~L~~L~L~~n~i~~-----lp~~~~~l~~L~~L~l~~N~i~~l-----p~~ 69 (222)
..++++..+.|.+.. +...|...+.|+.+.++.|.|.. +-..+.++++|++|||..|.++.- ...
T Consensus 157 ~~Lrv~i~~rNrlen~ga~~~A~~~~~~~~leevr~~qN~I~~eG~~al~eal~~~~~LevLdl~DNtft~egs~~Laka 236 (382)
T KOG1909|consen 157 PKLRVFICGRNRLENGGATALAEAFQSHPTLEEVRLSQNGIRPEGVTALAEALEHCPHLEVLDLRDNTFTLEGSVALAKA 236 (382)
T ss_pred cceEEEEeeccccccccHHHHHHHHHhccccceEEEecccccCchhHHHHHHHHhCCcceeeecccchhhhHHHHHHHHH
Confidence 345677777777653 23355666777777777777654 223466777777777777777632 223
Q ss_pred hhCCCCCceeeccCCccCCCcch---Hhhc-CCCCCCEEEeeCCCCCCchhH-HHHHHHhCCccccccCCCC
Q 027557 70 LAFNKKLQNLDLGKNLITRWSEL---KVLK-SLVSLNNLNLQGNPVAEYDKL-AKKVKNLLPSLHIFNARPI 136 (222)
Q Consensus 70 ~~~l~~L~~L~L~~N~i~~~~~~---~~~~-~l~~L~~L~l~~N~l~~~~~~-~~~~~~~l~~L~~l~~~~~ 136 (222)
+..++.|+.|+++.+.+..-... ..+. ..++|+.|.+.+|.|+..... ........|.|..|+....
T Consensus 237 L~s~~~L~El~l~dcll~~~Ga~a~~~al~~~~p~L~vl~l~gNeIt~da~~~la~~~~ek~dL~kLnLngN 308 (382)
T KOG1909|consen 237 LSSWPHLRELNLGDCLLENEGAIAFVDALKESAPSLEVLELAGNEITRDAALALAACMAEKPDLEKLNLNGN 308 (382)
T ss_pred hcccchheeecccccccccccHHHHHHHHhccCCCCceeccCcchhHHHHHHHHHHHHhcchhhHHhcCCcc
Confidence 55566777777777777653321 1222 356777777777777654321 1222334566666655433
No 59
>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A.
Probab=97.74 E-value=7.3e-05 Score=52.88 Aligned_cols=97 Identities=19% Similarity=0.435 Sum_probs=45.1
Q ss_pred CccEEEeecCCCccchh-hhcCCCCCcEEEcccCCCcccccc-ccCCccCCEEecccCcCCcCchh-hhCCCCCceeecc
Q 027557 6 RDCPAVLSRNPIREIGD-SLLNMKAITKLSLSNCQVQIIGSS-LKSCTELKELRLAHNDIKTLPAE-LAFNKKLQNLDLG 82 (222)
Q Consensus 6 ~~~~L~L~~n~l~~lp~-~~~~l~~L~~L~L~~n~i~~lp~~-~~~l~~L~~L~l~~N~i~~lp~~-~~~l~~L~~L~L~ 82 (222)
.++.+.+.. .+..|+. .|..+..|+.+.+..+ +..++.. |..+++|+.+.+.. .+..++.. |..+++|+.+.+.
T Consensus 13 ~l~~i~~~~-~~~~I~~~~F~~~~~l~~i~~~~~-~~~i~~~~F~~~~~l~~i~~~~-~~~~i~~~~F~~~~~l~~i~~~ 89 (129)
T PF13306_consen 13 NLESITFPN-TIKKIGENAFSNCTSLKSINFPNN-LTSIGDNAFSNCKSLESITFPN-NLKSIGDNAFSNCTNLKNIDIP 89 (129)
T ss_dssp T--EEEETS-T--EE-TTTTTT-TT-SEEEESST-TSCE-TTTTTT-TT-EEEEETS-TT-EE-TTTTTT-TTECEEEET
T ss_pred CCCEEEECC-CeeEeChhhccccccccccccccc-ccccceeeeecccccccccccc-cccccccccccccccccccccC
Confidence 455666653 4666653 5556666777776664 6665544 55665666666654 44444332 5556666666665
Q ss_pred CCccCCCcchHhhcCCCCCCEEEeeC
Q 027557 83 KNLITRWSELKVLKSLVSLNNLNLQG 108 (222)
Q Consensus 83 ~N~i~~~~~~~~~~~l~~L~~L~l~~ 108 (222)
.+ +..++. ..+..+ +|+.+.+..
T Consensus 90 ~~-~~~i~~-~~f~~~-~l~~i~~~~ 112 (129)
T PF13306_consen 90 SN-ITEIGS-SSFSNC-NLKEINIPS 112 (129)
T ss_dssp TT--BEEHT-TTTTT--T--EEE-TT
T ss_pred cc-ccEEch-hhhcCC-CceEEEECC
Confidence 54 554444 455555 666666553
No 60
>KOG0473 consensus Leucine-rich repeat protein [Function unknown]
Probab=97.73 E-value=5.4e-07 Score=69.52 Aligned_cols=95 Identities=22% Similarity=0.230 Sum_probs=85.5
Q ss_pred CCccch-hhhcCCCCCcEEEcccCCCccccccccCCccCCEEecccCcCCcCchhhhCCCCCceeeccCCccCCCcchHh
Q 027557 16 PIREIG-DSLLNMKAITKLSLSNCQVQIIGSSLKSCTELKELRLAHNDIKTLPAELAFNKKLQNLDLGKNLITRWSELKV 94 (222)
Q Consensus 16 ~l~~lp-~~~~~l~~L~~L~L~~n~i~~lp~~~~~l~~L~~L~l~~N~i~~lp~~~~~l~~L~~L~L~~N~i~~~~~~~~ 94 (222)
.++++| ..+..+...+.||++.|++..+-..|..++.|..|+++.|+|..+|.++..+..+..+++..|+.+..|. .
T Consensus 29 ~~s~~~v~ei~~~kr~tvld~~s~r~vn~~~n~s~~t~~~rl~~sknq~~~~~~d~~q~~e~~~~~~~~n~~~~~p~--s 106 (326)
T KOG0473|consen 29 ELSEIPVREIASFKRVTVLDLSSNRLVNLGKNFSILTRLVRLDLSKNQIKFLPKDAKQQRETVNAASHKNNHSQQPK--S 106 (326)
T ss_pred HhcccchhhhhccceeeeehhhhhHHHhhccchHHHHHHHHHhccHhhHhhChhhHHHHHHHHHHHhhccchhhCCc--c
Confidence 345666 3667788999999999999998878999999999999999999999999999999999999999999987 8
Q ss_pred hcCCCCCCEEEeeCCCCC
Q 027557 95 LKSLVSLNNLNLQGNPVA 112 (222)
Q Consensus 95 ~~~l~~L~~L~l~~N~l~ 112 (222)
++..+.++++++-+|++.
T Consensus 107 ~~k~~~~k~~e~k~~~~~ 124 (326)
T KOG0473|consen 107 QKKEPHPKKNEQKKTEFF 124 (326)
T ss_pred ccccCCcchhhhccCcch
Confidence 999999999999999854
No 61
>KOG3763 consensus mRNA export factor TAP/MEX67 [RNA processing and modification]
Probab=97.71 E-value=3.1e-05 Score=66.51 Aligned_cols=92 Identities=30% Similarity=0.455 Sum_probs=68.9
Q ss_pred cCCccCCEEecccCcCCcCch--h-hhCCCCCceeeccCC--ccCCCcchHhhcCCCCCCEEEeeCCCCCCc----hhHH
Q 027557 48 KSCTELKELRLAHNDIKTLPA--E-LAFNKKLQNLDLGKN--LITRWSELKVLKSLVSLNNLNLQGNPVAEY----DKLA 118 (222)
Q Consensus 48 ~~l~~L~~L~l~~N~i~~lp~--~-~~~l~~L~~L~L~~N--~i~~~~~~~~~~~l~~L~~L~l~~N~l~~~----~~~~ 118 (222)
...+.+..++|++|++..+.. + -...++|..|+|++| .+....++..++.+ .|+.|.+.|||++.. ..|.
T Consensus 215 ~n~p~i~sl~lsnNrL~~Ld~~sslsq~apklk~L~LS~N~~~~~~~~el~K~k~l-~Leel~l~GNPlc~tf~~~s~yv 293 (585)
T KOG3763|consen 215 ENFPEILSLSLSNNRLYHLDALSSLSQIAPKLKTLDLSHNHSKISSESELDKLKGL-PLEELVLEGNPLCTTFSDRSEYV 293 (585)
T ss_pred cCCcceeeeecccchhhchhhhhHHHHhcchhheeecccchhhhcchhhhhhhcCC-CHHHeeecCCccccchhhhHHHH
Confidence 456778889999999987721 1 234589999999999 66665554444444 489999999999765 4566
Q ss_pred HHHHHhCCccccccCCCCChhh
Q 027557 119 KKVKNLLPSLHIFNARPINRIT 140 (222)
Q Consensus 119 ~~~~~~l~~L~~l~~~~~~~~~ 140 (222)
..+...+|+|..||+..+....
T Consensus 294 ~~i~~~FPKL~~LDG~ev~~~~ 315 (585)
T KOG3763|consen 294 SAIRELFPKLLRLDGVEVQPEV 315 (585)
T ss_pred HHHHHhcchheeecCcccCccc
Confidence 6777899999999998877543
No 62
>PRK15386 type III secretion protein GogB; Provisional
Probab=97.68 E-value=9.3e-05 Score=62.45 Aligned_cols=93 Identities=20% Similarity=0.296 Sum_probs=62.0
Q ss_pred CccEEEeec-CCCccchhhhcCCCCCcEEEcccC-CCccccccccCCccCCEEecccCc---CCcCchhhhCC-------
Q 027557 6 RDCPAVLSR-NPIREIGDSLLNMKAITKLSLSNC-QVQIIGSSLKSCTELKELRLAHND---IKTLPAELAFN------- 73 (222)
Q Consensus 6 ~~~~L~L~~-n~l~~lp~~~~~l~~L~~L~L~~n-~i~~lp~~~~~l~~L~~L~l~~N~---i~~lp~~~~~l------- 73 (222)
.+++|.+++ +.++.+|+.+. .+|++|++++| .+..+|.. |+.|++..|. +..+|.++..|
T Consensus 73 sLtsL~Lsnc~nLtsLP~~LP--~nLe~L~Ls~Cs~L~sLP~s------Le~L~L~~n~~~~L~~LPssLk~L~I~~~n~ 144 (426)
T PRK15386 73 ELTEITIENCNNLTTLPGSIP--EGLEKLTVCHCPEISGLPES------VRSLEIKGSATDSIKNVPNGLTSLSINSYNP 144 (426)
T ss_pred CCcEEEccCCCCcccCCchhh--hhhhheEccCcccccccccc------cceEEeCCCCCcccccCcchHhheecccccc
Confidence 468889887 55777776553 58999999998 77777753 5556666654 44566554333
Q ss_pred -----------CCCceeeccCCccCCCcchHhhcCCCCCCEEEeeCCC
Q 027557 74 -----------KKLQNLDLGKNLITRWSELKVLKSLVSLNNLNLQGNP 110 (222)
Q Consensus 74 -----------~~L~~L~L~~N~i~~~~~~~~~~~l~~L~~L~l~~N~ 110 (222)
++|++|++++|....+|. .+. .+|+.|+++.|.
T Consensus 145 ~~~~~lp~~LPsSLk~L~Is~c~~i~LP~--~LP--~SLk~L~ls~n~ 188 (426)
T PRK15386 145 ENQARIDNLISPSLKTLSLTGCSNIILPE--KLP--ESLQSITLHIEQ 188 (426)
T ss_pred ccccccccccCCcccEEEecCCCcccCcc--ccc--ccCcEEEecccc
Confidence 368888888877665553 222 478888887663
No 63
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.58 E-value=2.6e-05 Score=62.52 Aligned_cols=101 Identities=23% Similarity=0.259 Sum_probs=72.9
Q ss_pred EEEeecCCCccchh--hh-cCCCCCcEEEcccCCCcc---ccccccCCccCCEEecccCcCCcCchhh-hCCCCCceeec
Q 027557 9 PAVLSRNPIREIGD--SL-LNMKAITKLSLSNCQVQI---IGSSLKSCTELKELRLAHNDIKTLPAEL-AFNKKLQNLDL 81 (222)
Q Consensus 9 ~L~L~~n~l~~lp~--~~-~~l~~L~~L~L~~n~i~~---lp~~~~~l~~L~~L~l~~N~i~~lp~~~-~~l~~L~~L~L 81 (222)
.|.+.++.|....+ .| ..++.++.|||.+|.|+. +-.-+.++|.|++|+++.|.+...-..+ ..+.+|++|-|
T Consensus 49 llvln~~~id~~gd~~~~~~~~~~v~elDL~~N~iSdWseI~~ile~lP~l~~LNls~N~L~s~I~~lp~p~~nl~~lVL 128 (418)
T KOG2982|consen 49 LLVLNGSIIDNEGDVMLFGSSVTDVKELDLTGNLISDWSEIGAILEQLPALTTLNLSCNSLSSDIKSLPLPLKNLRVLVL 128 (418)
T ss_pred hheecCCCCCcchhHHHHHHHhhhhhhhhcccchhccHHHHHHHHhcCccceEeeccCCcCCCccccCcccccceEEEEE
Confidence 56777777876654 34 357889999999999988 4444788999999999999987321233 36678999999
Q ss_pred cCCccCCCcchHhhcCCCCCCEEEeeCC
Q 027557 82 GKNLITRWSELKVLKSLVSLNNLNLQGN 109 (222)
Q Consensus 82 ~~N~i~~~~~~~~~~~l~~L~~L~l~~N 109 (222)
.+..+..--.-..+..+|.++.|+++.|
T Consensus 129 NgT~L~w~~~~s~l~~lP~vtelHmS~N 156 (418)
T KOG2982|consen 129 NGTGLSWTQSTSSLDDLPKVTELHMSDN 156 (418)
T ss_pred cCCCCChhhhhhhhhcchhhhhhhhccc
Confidence 8887654221135566777777777777
No 64
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=97.53 E-value=8.2e-06 Score=65.29 Aligned_cols=130 Identities=16% Similarity=0.112 Sum_probs=69.2
Q ss_pred CCCccEEEeecCCCc--cchhhhcCCCCCcEEEcccCCCcc-ccccccCCccCCEEecccC-cCCcCch--hhhCCCCCc
Q 027557 4 GIRDCPAVLSRNPIR--EIGDSLLNMKAITKLSLSNCQVQI-IGSSLKSCTELKELRLAHN-DIKTLPA--ELAFNKKLQ 77 (222)
Q Consensus 4 ~~~~~~L~L~~n~l~--~lp~~~~~l~~L~~L~L~~n~i~~-lp~~~~~l~~L~~L~l~~N-~i~~lp~--~~~~l~~L~ 77 (222)
..++..|||+...|+ .+-.-+..+..|+.|.|.++++.. +-..+..-.+|..|+++.+ .+++-.. -+..++.|.
T Consensus 184 rsRlq~lDLS~s~it~stl~~iLs~C~kLk~lSlEg~~LdD~I~~~iAkN~~L~~lnlsm~sG~t~n~~~ll~~scs~L~ 263 (419)
T KOG2120|consen 184 RSRLQHLDLSNSVITVSTLHGILSQCSKLKNLSLEGLRLDDPIVNTIAKNSNLVRLNLSMCSGFTENALQLLLSSCSRLD 263 (419)
T ss_pred hhhhHHhhcchhheeHHHHHHHHHHHHhhhhccccccccCcHHHHHHhccccceeeccccccccchhHHHHHHHhhhhHh
Confidence 344667788887777 233345667777777777777766 4434555555666666543 3442211 134444555
Q ss_pred eeeccCCccCCCc---------------------------ch-HhhcCCCCCCEEEeeCCC-CCCchhHHHHHHHhCCcc
Q 027557 78 NLDLGKNLITRWS---------------------------EL-KVLKSLVSLNNLNLQGNP-VAEYDKLAKKVKNLLPSL 128 (222)
Q Consensus 78 ~L~L~~N~i~~~~---------------------------~~-~~~~~l~~L~~L~l~~N~-l~~~~~~~~~~~~~l~~L 128 (222)
.|+|+.+.+..-. .+ ...+++++|.+|||+.|. +...+ ...+..++.|
T Consensus 264 ~LNlsWc~l~~~~Vtv~V~hise~l~~LNlsG~rrnl~~sh~~tL~~rcp~l~~LDLSD~v~l~~~~---~~~~~kf~~L 340 (419)
T KOG2120|consen 264 ELNLSWCFLFTEKVTVAVAHISETLTQLNLSGYRRNLQKSHLSTLVRRCPNLVHLDLSDSVMLKNDC---FQEFFKFNYL 340 (419)
T ss_pred hcCchHhhccchhhhHHHhhhchhhhhhhhhhhHhhhhhhHHHHHHHhCCceeeeccccccccCchH---HHHHHhcchh
Confidence 5555444332210 11 134467777777777663 33321 1233466667
Q ss_pred ccccCCCC
Q 027557 129 HIFNARPI 136 (222)
Q Consensus 129 ~~l~~~~~ 136 (222)
+++..+..
T Consensus 341 ~~lSlsRC 348 (419)
T KOG2120|consen 341 QHLSLSRC 348 (419)
T ss_pred eeeehhhh
Confidence 66655543
No 65
>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A.
Probab=97.30 E-value=0.00077 Score=47.54 Aligned_cols=94 Identities=22% Similarity=0.424 Sum_probs=54.8
Q ss_pred cCC-CccEEEeecCCCccchh-hhcCCCCCcEEEcccCCCcccccc-ccCCccCCEEecccCcCCcCchh-hhCCCCCce
Q 027557 3 FGI-RDCPAVLSRNPIREIGD-SLLNMKAITKLSLSNCQVQIIGSS-LKSCTELKELRLAHNDIKTLPAE-LAFNKKLQN 78 (222)
Q Consensus 3 ~~~-~~~~L~L~~n~l~~lp~-~~~~l~~L~~L~L~~n~i~~lp~~-~~~l~~L~~L~l~~N~i~~lp~~-~~~l~~L~~ 78 (222)
.+. .++.+.+.++ +..++. .|.++..|+.+.+.. .+..++.. |..+++|+.+++..+ +..++.. |... .|+.
T Consensus 32 ~~~~~l~~i~~~~~-~~~i~~~~F~~~~~l~~i~~~~-~~~~i~~~~F~~~~~l~~i~~~~~-~~~i~~~~f~~~-~l~~ 107 (129)
T PF13306_consen 32 SNCTSLKSINFPNN-LTSIGDNAFSNCKSLESITFPN-NLKSIGDNAFSNCTNLKNIDIPSN-ITEIGSSSFSNC-NLKE 107 (129)
T ss_dssp TT-TT-SEEEESST-TSCE-TTTTTT-TT-EEEEETS-TT-EE-TTTTTT-TTECEEEETTT--BEEHTTTTTT--T--E
T ss_pred cccccccccccccc-ccccceeeeecccccccccccc-cccccccccccccccccccccCcc-ccEEchhhhcCC-CceE
Confidence 444 6788999885 888875 677888999999976 67777765 777999999999876 7777554 6676 9999
Q ss_pred eeccCCccCCCcchHhhcCCCCCC
Q 027557 79 LDLGKNLITRWSELKVLKSLVSLN 102 (222)
Q Consensus 79 L~L~~N~i~~~~~~~~~~~l~~L~ 102 (222)
+.+.. .+..++. ..|.++++|+
T Consensus 108 i~~~~-~~~~i~~-~~F~~~~~l~ 129 (129)
T PF13306_consen 108 INIPS-NITKIEE-NAFKNCTKLK 129 (129)
T ss_dssp EE-TT-B-SS-----GGG------
T ss_pred EEECC-CccEECC-ccccccccCC
Confidence 98876 5666665 6788887764
No 66
>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....
Probab=97.23 E-value=0.00015 Score=34.81 Aligned_cols=16 Identities=31% Similarity=0.318 Sum_probs=6.9
Q ss_pred CcEEEcccCCCccccc
Q 027557 30 ITKLSLSNCQVQIIGS 45 (222)
Q Consensus 30 L~~L~L~~n~i~~lp~ 45 (222)
|++|+|++|.|+.+|+
T Consensus 2 L~~Ldls~n~l~~ip~ 17 (22)
T PF00560_consen 2 LEYLDLSGNNLTSIPS 17 (22)
T ss_dssp ESEEEETSSEESEEGT
T ss_pred ccEEECCCCcCEeCCh
Confidence 3444444444444443
No 67
>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....
Probab=97.12 E-value=0.00017 Score=34.61 Aligned_cols=21 Identities=24% Similarity=0.523 Sum_probs=13.2
Q ss_pred cCCEEecccCcCCcCchhhhC
Q 027557 52 ELKELRLAHNDIKTLPAELAF 72 (222)
Q Consensus 52 ~L~~L~l~~N~i~~lp~~~~~ 72 (222)
+|++|++++|+|+.+|++|++
T Consensus 1 ~L~~Ldls~n~l~~ip~~~~~ 21 (22)
T PF00560_consen 1 NLEYLDLSGNNLTSIPSSFSN 21 (22)
T ss_dssp TESEEEETSSEESEEGTTTTT
T ss_pred CccEEECCCCcCEeCChhhcC
Confidence 366677777777766655443
No 68
>KOG0473 consensus Leucine-rich repeat protein [Function unknown]
Probab=97.08 E-value=7.6e-06 Score=63.28 Aligned_cols=83 Identities=17% Similarity=0.156 Sum_probs=76.4
Q ss_pred CCccEEEeecCCCccchhhhcCCCCCcEEEcccCCCccccccccCCccCCEEecccCcCCcCchhhhCCCCCceeeccCC
Q 027557 5 IRDCPAVLSRNPIREIGDSLLNMKAITKLSLSNCQVQIIGSSLKSCTELKELRLAHNDIKTLPAELAFNKKLQNLDLGKN 84 (222)
Q Consensus 5 ~~~~~L~L~~n~l~~lp~~~~~l~~L~~L~L~~n~i~~lp~~~~~l~~L~~L~l~~N~i~~lp~~~~~l~~L~~L~L~~N 84 (222)
-+.+.||++.|++-.+...|..++.|..|+++.|+|..+|..+..+..+..+++..|..+.+|.++...+.++.+++-+|
T Consensus 42 kr~tvld~~s~r~vn~~~n~s~~t~~~rl~~sknq~~~~~~d~~q~~e~~~~~~~~n~~~~~p~s~~k~~~~k~~e~k~~ 121 (326)
T KOG0473|consen 42 KRVTVLDLSSNRLVNLGKNFSILTRLVRLDLSKNQIKFLPKDAKQQRETVNAASHKNNHSQQPKSQKKEPHPKKNEQKKT 121 (326)
T ss_pred ceeeeehhhhhHHHhhccchHHHHHHHHHhccHhhHhhChhhHHHHHHHHHHHhhccchhhCCccccccCCcchhhhccC
Confidence 45678999999999888888889999999999999999999899999999999999999999999999999999999998
Q ss_pred ccC
Q 027557 85 LIT 87 (222)
Q Consensus 85 ~i~ 87 (222)
.+.
T Consensus 122 ~~~ 124 (326)
T KOG0473|consen 122 EFF 124 (326)
T ss_pred cch
Confidence 754
No 69
>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]
Probab=97.05 E-value=0.0022 Score=51.08 Aligned_cols=83 Identities=19% Similarity=0.303 Sum_probs=47.2
Q ss_pred CccEEEeecCCCcc-----chhhhcCCCCCcEEEcccCCCcc----cc-------ccccCCccCCEEecccCcCC-cCch
Q 027557 6 RDCPAVLSRNPIRE-----IGDSLLNMKAITKLSLSNCQVQI----IG-------SSLKSCTELKELRLAHNDIK-TLPA 68 (222)
Q Consensus 6 ~~~~L~L~~n~l~~-----lp~~~~~l~~L~~L~L~~n~i~~----lp-------~~~~~l~~L~~L~l~~N~i~-~lp~ 68 (222)
.++.++||+|-|.. +...+.+-.+|+..+++.-.... ++ +.+..+++|+..+||.|.+. ..|.
T Consensus 31 ~~~evdLSGNtigtEA~e~l~~~ia~~~~L~vvnfsd~ftgr~kde~~~~L~~Ll~aLlkcp~l~~v~LSDNAfg~~~~e 110 (388)
T COG5238 31 ELVEVDLSGNTIGTEAMEELCNVIANVRNLRVVNFSDAFTGRDKDELYSNLVMLLKALLKCPRLQKVDLSDNAFGSEFPE 110 (388)
T ss_pred ceeEEeccCCcccHHHHHHHHHHHhhhcceeEeehhhhhhcccHHHHHHHHHHHHHHHhcCCcceeeeccccccCcccch
Confidence 45678888888762 33344555566666665543221 22 23445667777777777665 3332
Q ss_pred ----hhhCCCCCceeeccCCccCC
Q 027557 69 ----ELAFNKKLQNLDLGKNLITR 88 (222)
Q Consensus 69 ----~~~~l~~L~~L~L~~N~i~~ 88 (222)
-++.-+.|.+|.|++|.+.-
T Consensus 111 ~L~d~is~~t~l~HL~l~NnGlGp 134 (388)
T COG5238 111 ELGDLISSSTDLVHLKLNNNGLGP 134 (388)
T ss_pred HHHHHHhcCCCceeEEeecCCCCc
Confidence 24455666777776665544
No 70
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=96.77 E-value=0.00031 Score=56.51 Aligned_cols=130 Identities=18% Similarity=0.098 Sum_probs=73.8
Q ss_pred CccEEEeecCC-Cccch--hhhcCCCCCcEEEcccCCCcc--ccccccC-CccCCEEecccCcC----CcCchhhhCCCC
Q 027557 6 RDCPAVLSRNP-IREIG--DSLLNMKAITKLSLSNCQVQI--IGSSLKS-CTELKELRLAHNDI----KTLPAELAFNKK 75 (222)
Q Consensus 6 ~~~~L~L~~n~-l~~lp--~~~~~l~~L~~L~L~~n~i~~--lp~~~~~-l~~L~~L~l~~N~i----~~lp~~~~~l~~ 75 (222)
.++.|+|+.++ |++-. --+.++..|..|+|++|.+.. +...+.+ -.+|..|+|++.+= +++..-...+++
T Consensus 235 ~L~~lnlsm~sG~t~n~~~ll~~scs~L~~LNlsWc~l~~~~Vtv~V~hise~l~~LNlsG~rrnl~~sh~~tL~~rcp~ 314 (419)
T KOG2120|consen 235 NLVRLNLSMCSGFTENALQLLLSSCSRLDELNLSWCFLFTEKVTVAVAHISETLTQLNLSGYRRNLQKSHLSTLVRRCPN 314 (419)
T ss_pred cceeeccccccccchhHHHHHHHhhhhHhhcCchHhhccchhhhHHHhhhchhhhhhhhhhhHhhhhhhHHHHHHHhCCc
Confidence 34555555544 44321 134556666666666665544 1111111 23455666655431 122222456899
Q ss_pred CceeeccCCccCCCcchHhhcCCCCCCEEEeeCCCCCCchhHHHHHHHhCCccccccCCCCC
Q 027557 76 LQNLDLGKNLITRWSELKVLKSLVSLNNLNLQGNPVAEYDKLAKKVKNLLPSLHIFNARPIN 137 (222)
Q Consensus 76 L~~L~L~~N~i~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~l~~~~~~ 137 (222)
|.+|||+.|---.-.-+..|-+++.|++|.++.+.... +....-+...|+|.+|+.....
T Consensus 315 l~~LDLSD~v~l~~~~~~~~~kf~~L~~lSlsRCY~i~--p~~~~~l~s~psl~yLdv~g~v 374 (419)
T KOG2120|consen 315 LVHLDLSDSVMLKNDCFQEFFKFNYLQHLSLSRCYDII--PETLLELNSKPSLVYLDVFGCV 374 (419)
T ss_pred eeeeccccccccCchHHHHHHhcchheeeehhhhcCCC--hHHeeeeccCcceEEEEecccc
Confidence 99999998753332444678899999999998775332 2222234578999999876544
No 71
>PF13504 LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OOK_G 1QYY_G 1SQ0_B 1P9A_G 1GWB_A 1P8V_A 1M0Z_A 1U0N_D ....
Probab=96.74 E-value=0.0011 Score=29.59 Aligned_cols=15 Identities=27% Similarity=0.432 Sum_probs=5.6
Q ss_pred CCcEEEcccCCCccc
Q 027557 29 AITKLSLSNCQVQII 43 (222)
Q Consensus 29 ~L~~L~L~~n~i~~l 43 (222)
+|+.|+|++|+|+.+
T Consensus 2 ~L~~L~l~~n~L~~l 16 (17)
T PF13504_consen 2 NLRTLDLSNNRLTSL 16 (17)
T ss_dssp T-SEEEETSS--SSE
T ss_pred ccCEEECCCCCCCCC
Confidence 344444444444444
No 72
>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]
Probab=96.62 E-value=0.011 Score=47.19 Aligned_cols=129 Identities=20% Similarity=0.150 Sum_probs=73.6
Q ss_pred CccEEEeecCCCc-cch----hhhcCCCCCcEEEcccCCCcccccc-c-------------cCCccCCEEecccCcCCcC
Q 027557 6 RDCPAVLSRNPIR-EIG----DSLLNMKAITKLSLSNCQVQIIGSS-L-------------KSCTELKELRLAHNDIKTL 66 (222)
Q Consensus 6 ~~~~L~L~~n~l~-~lp----~~~~~l~~L~~L~L~~n~i~~lp~~-~-------------~~l~~L~~L~l~~N~i~~l 66 (222)
++...+||.|.+. +.| +-+.+-+.|..|.|++|.+.-+..+ + ..-|.|++....+|++..-
T Consensus 93 ~l~~v~LSDNAfg~~~~e~L~d~is~~t~l~HL~l~NnGlGp~aG~rigkal~~la~nKKaa~kp~Le~vicgrNRleng 172 (388)
T COG5238 93 RLQKVDLSDNAFGSEFPEELGDLISSSTDLVHLKLNNNGLGPIAGGRIGKALFHLAYNKKAADKPKLEVVICGRNRLENG 172 (388)
T ss_pred cceeeeccccccCcccchHHHHHHhcCCCceeEEeecCCCCccchhHHHHHHHHHHHHhhhccCCCceEEEeccchhccC
Confidence 3456677777766 222 3455667777777777776543321 2 2346677777777777654
Q ss_pred chh-----hhCCCCCceeeccCCccCCC--cch--HhhcCCCCCCEEEeeCCCCCCch-hHHHHHHHhCCccccccCC
Q 027557 67 PAE-----LAFNKKLQNLDLGKNLITRW--SEL--KVLKSLVSLNNLNLQGNPVAEYD-KLAKKVKNLLPSLHIFNAR 134 (222)
Q Consensus 67 p~~-----~~~l~~L~~L~L~~N~i~~~--~~~--~~~~~l~~L~~L~l~~N~l~~~~-~~~~~~~~~l~~L~~l~~~ 134 (222)
|.. +..-..|+.+.+..|.|..- ..+ ..+..+.+|..|++..|-++... .+........+.|+.|...
T Consensus 173 s~~~~a~~l~sh~~lk~vki~qNgIrpegv~~L~~~gl~y~~~LevLDlqDNtft~~gS~~La~al~~W~~lrEL~ln 250 (388)
T COG5238 173 SKELSAALLESHENLKEVKIQQNGIRPEGVTMLAFLGLFYSHSLEVLDLQDNTFTLEGSRYLADALCEWNLLRELRLN 250 (388)
T ss_pred cHHHHHHHHHhhcCceeEEeeecCcCcchhHHHHHHHHHHhCcceeeeccccchhhhhHHHHHHHhcccchhhhcccc
Confidence 432 22224677777777766542 111 34556778888888888776543 3333344444555555443
No 73
>PF13504 LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OOK_G 1QYY_G 1SQ0_B 1P9A_G 1GWB_A 1P8V_A 1M0Z_A 1U0N_D ....
Probab=96.52 E-value=0.0015 Score=29.11 Aligned_cols=16 Identities=38% Similarity=0.771 Sum_probs=6.8
Q ss_pred cCCEEecccCcCCcCc
Q 027557 52 ELKELRLAHNDIKTLP 67 (222)
Q Consensus 52 ~L~~L~l~~N~i~~lp 67 (222)
+|+.|++++|+++++|
T Consensus 2 ~L~~L~l~~n~L~~lP 17 (17)
T PF13504_consen 2 NLRTLDLSNNRLTSLP 17 (17)
T ss_dssp T-SEEEETSS--SSE-
T ss_pred ccCEEECCCCCCCCCc
Confidence 4555566666555543
No 74
>smart00370 LRR Leucine-rich repeats, outliers.
Probab=95.74 E-value=0.01 Score=29.43 Aligned_cols=16 Identities=44% Similarity=0.872 Sum_probs=6.9
Q ss_pred cCCEEecccCcCCcCc
Q 027557 52 ELKELRLAHNDIKTLP 67 (222)
Q Consensus 52 ~L~~L~l~~N~i~~lp 67 (222)
+|++|+|++|+|+.+|
T Consensus 3 ~L~~L~L~~N~l~~lp 18 (26)
T smart00370 3 NLRELDLSNNQLSSLP 18 (26)
T ss_pred CCCEEECCCCcCCcCC
Confidence 3444444444444443
No 75
>smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily.
Probab=95.74 E-value=0.01 Score=29.43 Aligned_cols=16 Identities=44% Similarity=0.872 Sum_probs=6.9
Q ss_pred cCCEEecccCcCCcCc
Q 027557 52 ELKELRLAHNDIKTLP 67 (222)
Q Consensus 52 ~L~~L~l~~N~i~~lp 67 (222)
+|++|+|++|+|+.+|
T Consensus 3 ~L~~L~L~~N~l~~lp 18 (26)
T smart00369 3 NLRELDLSNNQLSSLP 18 (26)
T ss_pred CCCEEECCCCcCCcCC
Confidence 3444444444444443
No 76
>smart00370 LRR Leucine-rich repeats, outliers.
Probab=95.59 E-value=0.0093 Score=29.58 Aligned_cols=20 Identities=25% Similarity=0.390 Sum_probs=15.3
Q ss_pred CCCCcEEEcccCCCcccccc
Q 027557 27 MKAITKLSLSNCQVQIIGSS 46 (222)
Q Consensus 27 l~~L~~L~L~~n~i~~lp~~ 46 (222)
+++|++|+|++|.|+.+|..
T Consensus 1 L~~L~~L~L~~N~l~~lp~~ 20 (26)
T smart00370 1 LPNLRELDLSNNQLSSLPPG 20 (26)
T ss_pred CCCCCEEECCCCcCCcCCHH
Confidence 45778888888888888765
No 77
>smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily.
Probab=95.59 E-value=0.0093 Score=29.58 Aligned_cols=20 Identities=25% Similarity=0.390 Sum_probs=15.3
Q ss_pred CCCCcEEEcccCCCcccccc
Q 027557 27 MKAITKLSLSNCQVQIIGSS 46 (222)
Q Consensus 27 l~~L~~L~L~~n~i~~lp~~ 46 (222)
+++|++|+|++|.|+.+|..
T Consensus 1 L~~L~~L~L~~N~l~~lp~~ 20 (26)
T smart00369 1 LPNLRELDLSNNQLSSLPPG 20 (26)
T ss_pred CCCCCEEECCCCcCCcCCHH
Confidence 45778888888888888765
No 78
>TIGR00864 PCC polycystin cation channel protein. Note: this model has been restricted to the amino half because for technical reasons.
Probab=95.50 E-value=0.011 Score=60.01 Aligned_cols=78 Identities=17% Similarity=0.192 Sum_probs=51.7
Q ss_pred eccCCccCCCcchHhhcCCCCCCEEEeeCCCCCCchhHHHHHHHhCCcccc-c-c-CCCCChhhHhhhHHHHhhhcCCCC
Q 027557 80 DLGKNLITRWSELKVLKSLVSLNNLNLQGNPVAEYDKLAKKVKNLLPSLHI-F-N-ARPINRITKNEKDNIVDKVNDSSN 156 (222)
Q Consensus 80 ~L~~N~i~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~-l-~-~~~~~~~~~~~~~~~~~~~~~~~~ 156 (222)
||++|+|+.++. ..|..+++|+.|+|++|||.|.|...+ +..++..-+. + . ....+..+...+...+..+.....
T Consensus 1 DLSnN~LstLp~-g~F~~L~sL~~LdLsgNPw~CDC~L~W-L~~WL~~~~v~v~~~~~i~CasP~~LrG~~L~~l~~~d~ 78 (2740)
T TIGR00864 1 DISNNKISTIEE-GICANLCNLSEIDLSGNPFECDCGLAR-LPRWAEEKGVKVRQPEAALCAGPGALAGQPLLGIPLLDS 78 (2740)
T ss_pred CCCCCcCCccCh-HHhccCCCceEEEeeCCccccccccHH-HHHHHHhcCccccCCcccCCCCChHHCCCCcccCCcccC
Confidence 588999999998 889999999999999999999998755 3334433221 1 1 122344555555555555554444
Q ss_pred chh
Q 027557 157 NAD 159 (222)
Q Consensus 157 ~~~ 159 (222)
.|.
T Consensus 79 ~C~ 81 (2740)
T TIGR00864 79 GCD 81 (2740)
T ss_pred CCC
Confidence 454
No 79
>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]
Probab=93.70 E-value=0.085 Score=45.52 Aligned_cols=124 Identities=23% Similarity=0.268 Sum_probs=69.3
Q ss_pred cEEEeecCC-Ccc--chhhhcCCCCCcEEEcccC--CCcccc----ccccCCccCCEEecccCc-CCcCc-hhhh-CCCC
Q 027557 8 CPAVLSRNP-IRE--IGDSLLNMKAITKLSLSNC--QVQIIG----SSLKSCTELKELRLAHND-IKTLP-AELA-FNKK 75 (222)
Q Consensus 8 ~~L~L~~n~-l~~--lp~~~~~l~~L~~L~L~~n--~i~~lp----~~~~~l~~L~~L~l~~N~-i~~lp-~~~~-~l~~ 75 (222)
+.|.+..+. +.. +-.....++.|+.|+++++ .++..+ .....+++|+.|++++.. ++... ..+. .+++
T Consensus 191 ~~l~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~isd~~l~~l~~~c~~ 270 (482)
T KOG1947|consen 191 KRLSLSGCSKITDDSLDALALKCPNLEELDLSGCCLLITLSPLLLLLLLSICRKLKSLDLSGCGLVTDIGLSALASRCPN 270 (482)
T ss_pred hHhhhcccccCChhhHHHHHhhCchhheecccCcccccccchhHhhhhhhhcCCcCccchhhhhccCchhHHHHHhhCCC
Confidence 344444442 333 3344567788888888763 222211 123456778888888777 65431 1222 3678
Q ss_pred CceeeccCCc-cCCCcchHhhcCCCCCCEEEeeCCCCCCchhHHHHHHHhCCcccccc
Q 027557 76 LQNLDLGKNL-ITRWSELKVLKSLVSLNNLNLQGNPVAEYDKLAKKVKNLLPSLHIFN 132 (222)
Q Consensus 76 L~~L~L~~N~-i~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~l~ 132 (222)
|+.|.+.++. +++..-......++.|++|+++++........... ...+++++.+.
T Consensus 271 L~~L~l~~c~~lt~~gl~~i~~~~~~L~~L~l~~c~~~~d~~l~~~-~~~c~~l~~l~ 327 (482)
T KOG1947|consen 271 LETLSLSNCSNLTDEGLVSIAERCPSLRELDLSGCHGLTDSGLEAL-LKNCPNLRELK 327 (482)
T ss_pred cceEccCCCCccchhHHHHHHHhcCcccEEeeecCccchHHHHHHH-HHhCcchhhhh
Confidence 8888866665 55533223455677888888887765433333332 44577665543
No 80
>KOG3864 consensus Uncharacterized conserved protein [Function unknown]
Probab=92.94 E-value=0.041 Score=42.02 Aligned_cols=35 Identities=37% Similarity=0.354 Sum_probs=17.8
Q ss_pred CCCceeeccCC-ccCCCcchHhhcCCCCCCEEEeeCC
Q 027557 74 KKLQNLDLGKN-LITRWSELKVLKSLVSLNNLNLQGN 109 (222)
Q Consensus 74 ~~L~~L~L~~N-~i~~~~~~~~~~~l~~L~~L~l~~N 109 (222)
++|+.|+|++| +|++-. +..+..+++|+.|.+.+=
T Consensus 151 ~~L~~L~lsgC~rIT~~G-L~~L~~lknLr~L~l~~l 186 (221)
T KOG3864|consen 151 PSLQDLDLSGCPRITDGG-LACLLKLKNLRRLHLYDL 186 (221)
T ss_pred cchheeeccCCCeechhH-HHHHHHhhhhHHHHhcCc
Confidence 45555555544 354432 244555555555555543
No 81
>smart00365 LRR_SD22 Leucine-rich repeat, SDS22-like subfamily.
Probab=92.71 E-value=0.1 Score=25.95 Aligned_cols=15 Identities=27% Similarity=0.472 Sum_probs=7.0
Q ss_pred CCcEEEcccCCCccc
Q 027557 29 AITKLSLSNCQVQII 43 (222)
Q Consensus 29 ~L~~L~L~~n~i~~l 43 (222)
+|+.|+|+.|.|+.+
T Consensus 3 ~L~~L~L~~NkI~~I 17 (26)
T smart00365 3 NLEELDLSQNKIKKI 17 (26)
T ss_pred ccCEEECCCCcccee
Confidence 444444444444443
No 82
>smart00364 LRR_BAC Leucine-rich repeats, bacterial type.
Probab=92.58 E-value=0.074 Score=26.39 Aligned_cols=16 Identities=44% Similarity=0.835 Sum_probs=8.2
Q ss_pred cCCEEecccCcCCcCc
Q 027557 52 ELKELRLAHNDIKTLP 67 (222)
Q Consensus 52 ~L~~L~l~~N~i~~lp 67 (222)
+|++|++++|+++.+|
T Consensus 3 ~L~~L~vs~N~Lt~LP 18 (26)
T smart00364 3 SLKELNVSNNQLTSLP 18 (26)
T ss_pred ccceeecCCCccccCc
Confidence 3455555555555554
No 83
>KOG3864 consensus Uncharacterized conserved protein [Function unknown]
Probab=90.38 E-value=0.096 Score=40.05 Aligned_cols=78 Identities=27% Similarity=0.281 Sum_probs=54.1
Q ss_pred CCccEEEeecCCCccch-hhhcCCCCCcEEEcccCCCcc---ccccc-cCCccCCEEecccC-cCCcCc-hhhhCCCCCc
Q 027557 5 IRDCPAVLSRNPIREIG-DSLLNMKAITKLSLSNCQVQI---IGSSL-KSCTELKELRLAHN-DIKTLP-AELAFNKKLQ 77 (222)
Q Consensus 5 ~~~~~L~L~~n~l~~lp-~~~~~l~~L~~L~L~~n~i~~---lp~~~-~~l~~L~~L~l~~N-~i~~lp-~~~~~l~~L~ 77 (222)
..+..++-++..|.... +.+.+++.++.|.+.+|.--. +. .+ +..++|+.|++++| +|++-. ..+..+++|+
T Consensus 101 ~~IeaVDAsds~I~~eGle~L~~l~~i~~l~l~~ck~~dD~~L~-~l~~~~~~L~~L~lsgC~rIT~~GL~~L~~lknLr 179 (221)
T KOG3864|consen 101 VKIEAVDASDSSIMYEGLEHLRDLRSIKSLSLANCKYFDDWCLE-RLGGLAPSLQDLDLSGCPRITDGGLACLLKLKNLR 179 (221)
T ss_pred ceEEEEecCCchHHHHHHHHHhccchhhhheeccccchhhHHHH-HhcccccchheeeccCCCeechhHHHHHHHhhhhH
Confidence 44567788888887654 577888888888888876222 21 12 24689999999988 587531 3577788888
Q ss_pred eeeccC
Q 027557 78 NLDLGK 83 (222)
Q Consensus 78 ~L~L~~ 83 (222)
.|.+.+
T Consensus 180 ~L~l~~ 185 (221)
T KOG3864|consen 180 RLHLYD 185 (221)
T ss_pred HHHhcC
Confidence 887654
No 84
>KOG4308 consensus LRR-containing protein [Function unknown]
Probab=90.20 E-value=0.015 Score=50.73 Aligned_cols=40 Identities=38% Similarity=0.496 Sum_probs=17.3
Q ss_pred CCCceeeccCCccCCCcch---HhhcCCCCCCEEEeeCCCCCC
Q 027557 74 KKLQNLDLGKNLITRWSEL---KVLKSLVSLNNLNLQGNPVAE 113 (222)
Q Consensus 74 ~~L~~L~L~~N~i~~~~~~---~~~~~l~~L~~L~l~~N~l~~ 113 (222)
..+++++++.|.|...... ..+..++.++.+.+..|++..
T Consensus 262 ~~l~~l~l~~nsi~~~~~~~L~~~l~~~~~l~~l~l~~n~l~~ 304 (478)
T KOG4308|consen 262 ETLRVLDLSRNSITEKGVRDLAEVLVSCRQLEELSLSNNPLTD 304 (478)
T ss_pred hhhhhhhhhcCCccccchHHHHHHHhhhHHHHHhhcccCcccc
Confidence 3445555555554442211 123334444555555555443
No 85
>PF13516 LRR_6: Leucine Rich repeat; PDB: 3RGZ_A 3RJ0_A 3RIZ_A 3RGX_A 1DFJ_I 2BNH_A 3VQ1_A 3VQ2_A 2Z64_A 2OMX_A ....
Probab=88.98 E-value=0.19 Score=24.19 Aligned_cols=14 Identities=36% Similarity=0.487 Sum_probs=5.5
Q ss_pred CCCcEEEcccCCCc
Q 027557 28 KAITKLSLSNCQVQ 41 (222)
Q Consensus 28 ~~L~~L~L~~n~i~ 41 (222)
++|+.|+|++|.|+
T Consensus 2 ~~L~~L~l~~n~i~ 15 (24)
T PF13516_consen 2 PNLETLDLSNNQIT 15 (24)
T ss_dssp TT-SEEE-TSSBEH
T ss_pred CCCCEEEccCCcCC
Confidence 34444444444443
No 86
>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]
Probab=86.34 E-value=0.85 Score=39.30 Aligned_cols=110 Identities=25% Similarity=0.325 Sum_probs=76.5
Q ss_pred cCCCCCcEEEcccCC-Ccc--ccccccCCccCCEEecccC--cCCcCc----hhhhCCCCCceeeccCCc-cCCCcchHh
Q 027557 25 LNMKAITKLSLSNCQ-VQI--IGSSLKSCTELKELRLAHN--DIKTLP----AELAFNKKLQNLDLGKNL-ITRWSELKV 94 (222)
Q Consensus 25 ~~l~~L~~L~L~~n~-i~~--lp~~~~~l~~L~~L~l~~N--~i~~lp----~~~~~l~~L~~L~L~~N~-i~~~~~~~~ 94 (222)
..++.|+.|.+..+. +.. +-+.....+.|+.|+++++ .+...+ .....+.+|+.|+++... +++.. +..
T Consensus 185 ~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~isd~~-l~~ 263 (482)
T KOG1947|consen 185 SSCPLLKRLSLSGCSKITDDSLDALALKCPNLEELDLSGCCLLITLSPLLLLLLLSICRKLKSLDLSGCGLVTDIG-LSA 263 (482)
T ss_pred hhCchhhHhhhcccccCChhhHHHHHhhCchhheecccCcccccccchhHhhhhhhhcCCcCccchhhhhccCchh-HHH
Confidence 347889999988874 554 4445788999999999873 222222 234456889999999987 66643 234
Q ss_pred hcC-CCCCCEEEeeCCC-CCCchhHHHHHHHhCCccccccCCCCC
Q 027557 95 LKS-LVSLNNLNLQGNP-VAEYDKLAKKVKNLLPSLHIFNARPIN 137 (222)
Q Consensus 95 ~~~-l~~L~~L~l~~N~-l~~~~~~~~~~~~~l~~L~~l~~~~~~ 137 (222)
+.. +++|+.|.+.++. +++. ....+...++.|+.|+.....
T Consensus 264 l~~~c~~L~~L~l~~c~~lt~~--gl~~i~~~~~~L~~L~l~~c~ 306 (482)
T KOG1947|consen 264 LASRCPNLETLSLSNCSNLTDE--GLVSIAERCPSLRELDLSGCH 306 (482)
T ss_pred HHhhCCCcceEccCCCCccchh--HHHHHHHhcCcccEEeeecCc
Confidence 443 8999999977666 4442 345577789999998887544
No 87
>KOG3763 consensus mRNA export factor TAP/MEX67 [RNA processing and modification]
Probab=86.08 E-value=0.44 Score=41.79 Aligned_cols=63 Identities=32% Similarity=0.342 Sum_probs=44.8
Q ss_pred cCCCCCcEEEcccCCCcccccc---ccCCccCCEEecccC--cCCcCchhhh--CCCCCceeeccCCccCC
Q 027557 25 LNMKAITKLSLSNCQVQIIGSS---LKSCTELKELRLAHN--DIKTLPAELA--FNKKLQNLDLGKNLITR 88 (222)
Q Consensus 25 ~~l~~L~~L~L~~n~i~~lp~~---~~~l~~L~~L~l~~N--~i~~lp~~~~--~l~~L~~L~L~~N~i~~ 88 (222)
.+.+.+..+.|++|++..+..- -...|+|..|+|++| .+...+ .+. +...|+.|.+.||.|.+
T Consensus 215 ~n~p~i~sl~lsnNrL~~Ld~~sslsq~apklk~L~LS~N~~~~~~~~-el~K~k~l~Leel~l~GNPlc~ 284 (585)
T KOG3763|consen 215 ENFPEILSLSLSNNRLYHLDALSSLSQIAPKLKTLDLSHNHSKISSES-ELDKLKGLPLEELVLEGNPLCT 284 (585)
T ss_pred cCCcceeeeecccchhhchhhhhHHHHhcchhheeecccchhhhcchh-hhhhhcCCCHHHeeecCCcccc
Confidence 4677888899999998886521 345688999999999 554332 222 23568899999998865
No 88
>smart00446 LRRcap occurring C-terminal to leucine-rich repeats. A motif occurring C-terminal to leucine-rich repeats in "sds22-like" and "typical" LRR-containing proteins.
Probab=83.86 E-value=0.97 Score=22.43 Aligned_cols=21 Identities=29% Similarity=0.452 Sum_probs=17.7
Q ss_pred hhHHHHHHHhCCccccccCCC
Q 027557 115 DKLAKKVKNLLPSLHIFNARP 135 (222)
Q Consensus 115 ~~~~~~~~~~l~~L~~l~~~~ 135 (222)
+.|+.+++..+|+|+.||...
T Consensus 2 ~~YR~~Vi~~LPqL~~LD~~~ 22 (26)
T smart00446 2 AHYREKVIRLLPQLRKLDXXX 22 (26)
T ss_pred ccHHHHHHHHCCccceecccc
Confidence 468888999999999998753
No 89
>KOG4308 consensus LRR-containing protein [Function unknown]
Probab=83.79 E-value=0.089 Score=45.92 Aligned_cols=109 Identities=21% Similarity=0.227 Sum_probs=76.4
Q ss_pred CCCccEEEeecCCCcc-----chhhhcCCCC-CcEEEcccCCCcc-----ccccccCC-ccCCEEecccCcCCcC-----
Q 027557 4 GIRDCPAVLSRNPIRE-----IGDSLLNMKA-ITKLSLSNCQVQI-----IGSSLKSC-TELKELRLAHNDIKTL----- 66 (222)
Q Consensus 4 ~~~~~~L~L~~n~l~~-----lp~~~~~l~~-L~~L~L~~n~i~~-----lp~~~~~l-~~L~~L~l~~N~i~~l----- 66 (222)
...+++|.|++|.++. +...+...+. +..|++.+|.+.. +.+.+..+ ..+++++++.|.|+..
T Consensus 203 ~~~le~L~L~~~~~t~~~c~~l~~~l~~~~~~~~el~l~~n~l~d~g~~~L~~~l~~~~~~l~~l~l~~nsi~~~~~~~L 282 (478)
T KOG4308|consen 203 LSSLETLKLSRCGVTSSSCALLDEVLASGESLLRELDLASNKLGDVGVEKLLPCLSVLSETLRVLDLSRNSITEKGVRDL 282 (478)
T ss_pred cccHHHHhhhhcCcChHHHHHHHHHHhccchhhHHHHHHhcCcchHHHHHHHHHhcccchhhhhhhhhcCCccccchHHH
Confidence 3456788899999873 2234556666 7779999999875 34456666 7889999999999843
Q ss_pred chhhhCCCCCceeeccCCccCCCcch---HhhcCCCCCCEEEeeCCCCC
Q 027557 67 PAELAFNKKLQNLDLGKNLITRWSEL---KVLKSLVSLNNLNLQGNPVA 112 (222)
Q Consensus 67 p~~~~~l~~L~~L~L~~N~i~~~~~~---~~~~~l~~L~~L~l~~N~l~ 112 (222)
...+.....++.+.++.|.+..-..- ..+.....+.++.+.++...
T Consensus 283 ~~~l~~~~~l~~l~l~~n~l~~~~~~~~~~~l~~~~~~~~~~l~~~~~~ 331 (478)
T KOG4308|consen 283 AEVLVSCRQLEELSLSNNPLTDYGVELLLEALERKTPLLHLVLGGTGKG 331 (478)
T ss_pred HHHHhhhHHHHHhhcccCccccHHHHHHHHHhhhcccchhhhccccCcc
Confidence 34566778999999999998874321 34445556667777765443
No 90
>smart00368 LRR_RI Leucine rich repeat, ribonuclease inhibitor type.
Probab=83.72 E-value=0.87 Score=22.86 Aligned_cols=13 Identities=31% Similarity=0.511 Sum_probs=6.4
Q ss_pred CCcEEEcccCCCc
Q 027557 29 AITKLSLSNCQVQ 41 (222)
Q Consensus 29 ~L~~L~L~~n~i~ 41 (222)
+|++|+|++|.|.
T Consensus 3 ~L~~LdL~~N~i~ 15 (28)
T smart00368 3 SLRELDLSNNKLG 15 (28)
T ss_pred ccCEEECCCCCCC
Confidence 4455555555543
No 91
>KOG4341 consensus F-box protein containing LRR [General function prediction only]
Probab=76.62 E-value=2.4 Score=36.20 Aligned_cols=128 Identities=20% Similarity=0.162 Sum_probs=72.1
Q ss_pred cEEEeecCC-Cccch-hhh-cCCCCCcEEEcccCC-Cccccc--cccCCccCCEEecccCcCCc---CchhhhCCCCCce
Q 027557 8 CPAVLSRNP-IREIG-DSL-LNMKAITKLSLSNCQ-VQIIGS--SLKSCTELKELRLAHNDIKT---LPAELAFNKKLQN 78 (222)
Q Consensus 8 ~~L~L~~n~-l~~lp-~~~-~~l~~L~~L~L~~n~-i~~lp~--~~~~l~~L~~L~l~~N~i~~---lp~~~~~l~~L~~ 78 (222)
.+|+.+++. ++..+ ..+ .+.++|+.|-++.++ ++..-. --.+.+.|+.+++-...... +-.--.+.+.|+.
T Consensus 297 q~l~~s~~t~~~d~~l~aLg~~~~~L~~l~l~~c~~fsd~~ft~l~rn~~~Le~l~~e~~~~~~d~tL~sls~~C~~lr~ 376 (483)
T KOG4341|consen 297 QVLCYSSCTDITDEVLWALGQHCHNLQVLELSGCQQFSDRGFTMLGRNCPHLERLDLEECGLITDGTLASLSRNCPRLRV 376 (483)
T ss_pred hhhcccCCCCCchHHHHHHhcCCCceEEEeccccchhhhhhhhhhhcCChhhhhhcccccceehhhhHhhhccCCchhcc
Confidence 455555554 33211 233 467889999888887 333111 12456678888877765431 2111235678888
Q ss_pred eeccCCccCCCcchH----hhcCCCCCCEEEeeCCCCCCchhHHHHHHHhCCccccccCCCCC
Q 027557 79 LDLGKNLITRWSELK----VLKSLVSLNNLNLQGNPVAEYDKLAKKVKNLLPSLHIFNARPIN 137 (222)
Q Consensus 79 L~L~~N~i~~~~~~~----~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~l~~~~~~ 137 (222)
|.++++...+-..+. .-..+..|..+.+.+.|...... ..-...+++|+.++..+..
T Consensus 377 lslshce~itD~gi~~l~~~~c~~~~l~~lEL~n~p~i~d~~--Le~l~~c~~Leri~l~~~q 437 (483)
T KOG4341|consen 377 LSLSHCELITDEGIRHLSSSSCSLEGLEVLELDNCPLITDAT--LEHLSICRNLERIELIDCQ 437 (483)
T ss_pred CChhhhhhhhhhhhhhhhhccccccccceeeecCCCCchHHH--HHHHhhCcccceeeeechh
Confidence 888876433211111 23456678888888888665432 2234567777766555444
No 92
>TIGR00864 PCC polycystin cation channel protein. Note: this model has been restricted to the amino half because for technical reasons.
Probab=68.07 E-value=3.2 Score=43.41 Aligned_cols=32 Identities=22% Similarity=0.296 Sum_probs=26.3
Q ss_pred EeecCCCccchh-hhcCCCCCcEEEcccCCCcc
Q 027557 11 VLSRNPIREIGD-SLLNMKAITKLSLSNCQVQI 42 (222)
Q Consensus 11 ~L~~n~l~~lp~-~~~~l~~L~~L~L~~n~i~~ 42 (222)
||++|+|+.||. .|..+++|+.|+|++|.+.-
T Consensus 1 DLSnN~LstLp~g~F~~L~sL~~LdLsgNPw~C 33 (2740)
T TIGR00864 1 DISNNKISTIEEGICANLCNLSEIDLSGNPFEC 33 (2740)
T ss_pred CCCCCcCCccChHHhccCCCceEEEeeCCcccc
Confidence 588999999875 66788899999999987654
No 93
>smart00367 LRR_CC Leucine-rich repeat - CC (cysteine-containing) subfamily.
Probab=52.14 E-value=10 Score=18.31 Aligned_cols=11 Identities=36% Similarity=0.773 Sum_probs=5.5
Q ss_pred CCCcEEEcccC
Q 027557 28 KAITKLSLSNC 38 (222)
Q Consensus 28 ~~L~~L~L~~n 38 (222)
++|+.|+|++|
T Consensus 2 ~~L~~L~l~~C 12 (26)
T smart00367 2 PNLRELDLSGC 12 (26)
T ss_pred CCCCEeCCCCC
Confidence 34555555554
No 94
>KOG4341 consensus F-box protein containing LRR [General function prediction only]
Probab=31.86 E-value=89 Score=27.15 Aligned_cols=89 Identities=18% Similarity=0.136 Sum_probs=50.4
Q ss_pred cCCCCCcEEEcccCCC-cc--ccccccCCccCCEEecccCc-CCcCch--hhhCCCCCceeeccCCccCCCcchH-hhcC
Q 027557 25 LNMKAITKLSLSNCQV-QI--IGSSLKSCTELKELRLAHND-IKTLPA--ELAFNKKLQNLDLGKNLITRWSELK-VLKS 97 (222)
Q Consensus 25 ~~l~~L~~L~L~~n~i-~~--lp~~~~~l~~L~~L~l~~N~-i~~lp~--~~~~l~~L~~L~L~~N~i~~~~~~~-~~~~ 97 (222)
..+..|++|+.+++.- +. +-.--.+..+|++|-++.++ ++...- --.+.+.|+.+++.......-..+. .-..
T Consensus 291 ~~c~~lq~l~~s~~t~~~d~~l~aLg~~~~~L~~l~l~~c~~fsd~~ft~l~rn~~~Le~l~~e~~~~~~d~tL~sls~~ 370 (483)
T KOG4341|consen 291 CGCHALQVLCYSSCTDITDEVLWALGQHCHNLQVLELSGCQQFSDRGFTMLGRNCPHLERLDLEECGLITDGTLASLSRN 370 (483)
T ss_pred hhhhHhhhhcccCCCCCchHHHHHHhcCCCceEEEeccccchhhhhhhhhhhcCChhhhhhcccccceehhhhHhhhccC
Confidence 3467788888777653 22 11113456778888887775 332210 1124567788877776443322222 2335
Q ss_pred CCCCCEEEeeCCCCCC
Q 027557 98 LVSLNNLNLQGNPVAE 113 (222)
Q Consensus 98 l~~L~~L~l~~N~l~~ 113 (222)
++.|+.+.+++.....
T Consensus 371 C~~lr~lslshce~it 386 (483)
T KOG4341|consen 371 CPRLRVLSLSHCELIT 386 (483)
T ss_pred CchhccCChhhhhhhh
Confidence 7788888888665433
No 95
>KOG4231 consensus Intracellular membrane-bound Ca2+-independent phospholipase A2 [Lipid transport and metabolism]
Probab=30.04 E-value=9.3 Score=33.64 Aligned_cols=48 Identities=15% Similarity=0.171 Sum_probs=28.3
Q ss_pred cEEEeecCCCccchhhhcCCCCCcEEEcccCCCccccccccCCccCCE
Q 027557 8 CPAVLSRNPIREIGDSLLNMKAITKLSLSNCQVQIIGSSLKSCTELKE 55 (222)
Q Consensus 8 ~~L~L~~n~l~~lp~~~~~l~~L~~L~L~~n~i~~lp~~~~~l~~L~~ 55 (222)
+.+.++++.+-..|..+..++.++.+.+..|.++..|..++.+.++..
T Consensus 107 t~~s~s~~~~~~~~~~vt~l~~~~~~~~~~~k~s~~~~li~k~~~~~i 154 (763)
T KOG4231|consen 107 TSLSLSGCGLLVMPVEVTELPLLEKLCLEHNKLSVLPPLIGKLKNLKI 154 (763)
T ss_pred eecccccceeccChHHHHhhhhhhHHHHHHhhhccchhhhhhhhhHHH
Confidence 445566666665565666666666666666666666655555544433
Done!