Query 027557
Match_columns 222
No_of_seqs 251 out of 3817
Neff 9.7
Searched_HMMs 29240
Date Mon Mar 25 19:51:54 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/027557.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/027557hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1a9n_A U2A', U2A'; complex (nu 99.8 5.1E-21 1.7E-25 143.2 11.1 141 5-147 19-161 (176)
2 2je0_A Acidic leucine-rich nuc 99.8 2.1E-20 7.2E-25 136.0 10.2 128 6-134 18-148 (149)
3 2ell_A Acidic leucine-rich nuc 99.8 2.8E-20 9.6E-25 138.0 10.4 132 5-137 24-158 (168)
4 2wfh_A SLIT homolog 2 protein 99.8 2.2E-20 7.5E-25 141.9 9.0 113 6-119 32-146 (193)
5 2v9t_B SLIT homolog 2 protein 99.8 6.6E-20 2.2E-24 142.1 9.5 125 6-134 33-160 (220)
6 3e6j_A Variable lymphocyte rec 99.8 2E-19 6.8E-24 140.2 11.0 124 6-134 41-167 (229)
7 2v70_A SLIT-2, SLIT homolog 2 99.8 1E-19 3.5E-24 141.0 8.4 124 7-134 34-161 (220)
8 1w8a_A SLIT protein; signaling 99.8 1E-19 3.5E-24 138.1 8.0 112 6-118 30-145 (192)
9 1dce_A Protein (RAB geranylger 99.8 2.2E-19 7.4E-24 157.1 9.7 124 6-132 442-566 (567)
10 1ds9_A Outer arm dynein; leuci 99.8 6.4E-21 2.2E-25 145.3 -1.3 137 6-144 49-192 (198)
11 3g39_A Variable lymphocyte rec 99.8 5.9E-19 2E-23 131.4 9.3 108 6-116 10-119 (170)
12 2v9t_B SLIT homolog 2 protein 99.8 1.1E-18 3.7E-23 135.2 10.2 103 9-114 15-119 (220)
13 3e6j_A Variable lymphocyte rec 99.8 2E-18 6.8E-23 134.5 11.0 108 7-115 66-175 (229)
14 2r9u_A Variable lymphocyte rec 99.8 2E-18 7E-23 128.9 10.2 107 7-116 14-122 (174)
15 2o6r_A Variable lymphocyte rec 99.7 1.2E-17 4E-22 124.8 11.7 110 6-116 29-141 (177)
16 2v70_A SLIT-2, SLIT homolog 2 99.7 6.7E-18 2.3E-22 130.7 9.8 120 8-133 14-136 (220)
17 2o6s_A Variable lymphocyte rec 99.7 1E-17 3.6E-22 128.2 10.7 126 6-135 29-157 (208)
18 3m19_A Variable lymphocyte rec 99.7 9.3E-18 3.2E-22 132.3 10.5 125 6-134 36-163 (251)
19 2wfh_A SLIT homolog 2 protein 99.7 7.8E-18 2.7E-22 127.8 9.5 122 7-134 12-134 (193)
20 4g8a_A TOLL-like receptor 4; l 99.7 3.5E-18 1.2E-22 150.3 8.6 127 6-135 53-182 (635)
21 1p9a_G Platelet glycoprotein I 99.7 1.4E-17 4.9E-22 134.1 10.4 108 8-116 80-189 (290)
22 3m19_A Variable lymphocyte rec 99.7 2.1E-17 7.3E-22 130.2 10.5 125 6-134 60-187 (251)
23 4fcg_A Uncharacterized protein 99.7 1.5E-17 5.2E-22 136.2 9.0 122 7-134 83-237 (328)
24 2o6s_A Variable lymphocyte rec 99.7 4.4E-17 1.5E-21 124.7 10.7 109 6-115 53-164 (208)
25 1p9a_G Platelet glycoprotein I 99.7 2.6E-17 8.7E-22 132.6 9.4 122 8-134 58-180 (290)
26 1w8a_A SLIT protein; signaling 99.7 1.6E-17 5.5E-22 125.9 7.6 122 7-134 10-134 (192)
27 3rfs_A Internalin B, repeat mo 99.7 5.1E-17 1.7E-21 129.5 10.5 107 7-115 65-173 (272)
28 2o6q_A Variable lymphocyte rec 99.7 5.7E-17 2E-21 129.0 10.6 107 7-114 39-148 (270)
29 2xot_A Amphoterin-induced prot 99.7 2.8E-17 9.7E-22 136.2 8.9 126 7-133 41-170 (361)
30 2o6q_A Variable lymphocyte rec 99.7 6.9E-17 2.3E-21 128.6 10.7 125 6-134 62-189 (270)
31 1ozn_A Reticulon 4 receptor; N 99.7 4.3E-17 1.5E-21 130.6 9.0 126 6-135 106-234 (285)
32 3rfs_A Internalin B, repeat mo 99.7 1E-16 3.5E-21 127.8 10.9 125 6-134 86-213 (272)
33 4fcg_A Uncharacterized protein 99.7 4.4E-17 1.5E-21 133.4 8.7 84 26-111 79-162 (328)
34 4ezg_A Putative uncharacterize 99.7 2.2E-16 7.6E-21 119.9 11.6 121 6-134 45-167 (197)
35 4ezg_A Putative uncharacterize 99.7 2.1E-16 7.2E-21 120.1 11.4 120 6-134 67-189 (197)
36 4b8c_D Glucose-repressible alc 99.7 4.4E-17 1.5E-21 146.4 8.3 109 6-116 225-333 (727)
37 2o6r_A Variable lymphocyte rec 99.7 1.5E-16 5E-21 118.8 9.7 123 6-134 8-132 (177)
38 1ozn_A Reticulon 4 receptor; N 99.7 2.6E-16 9E-21 126.0 10.9 126 6-135 81-210 (285)
39 2ell_A Acidic leucine-rich nuc 99.7 1.5E-16 5E-21 117.8 8.7 110 6-116 50-164 (168)
40 1xeu_A Internalin C; cellular 99.7 4.9E-16 1.7E-20 123.4 11.8 116 7-134 43-158 (263)
41 1h6t_A Internalin B; cell adhe 99.7 8.7E-16 3E-20 123.7 13.0 118 6-134 69-186 (291)
42 2xot_A Amphoterin-induced prot 99.7 3.8E-16 1.3E-20 129.4 11.1 118 6-127 65-188 (361)
43 1h6u_A Internalin H; cell adhe 99.7 9.1E-16 3.1E-20 124.5 13.0 103 7-115 65-167 (308)
44 2z62_A TOLL-like receptor 4, v 99.7 3E-16 1E-20 125.1 9.8 125 6-135 29-158 (276)
45 2ifg_A High affinity nerve gro 99.6 8.7E-16 3E-20 126.3 11.6 110 7-119 10-123 (347)
46 1xeu_A Internalin C; cellular 99.6 6.8E-16 2.3E-20 122.6 10.6 117 6-134 64-180 (263)
47 1h6u_A Internalin H; cell adhe 99.6 1.5E-15 5.2E-20 123.2 12.6 119 6-135 42-160 (308)
48 1a9n_A U2A', U2A'; complex (nu 99.6 2.4E-16 8.1E-21 117.7 7.0 108 6-114 43-155 (176)
49 1h6t_A Internalin B; cell adhe 99.6 1.9E-15 6.3E-20 121.7 12.4 118 6-134 91-208 (291)
50 2id5_A Lingo-1, leucine rich r 99.6 1.2E-15 4E-20 130.6 11.6 115 4-119 223-340 (477)
51 3zyj_A Leucine-rich repeat-con 99.6 2.9E-16 1E-20 133.2 7.6 112 6-119 186-299 (440)
52 4g8a_A TOLL-like receptor 4; l 99.6 8.9E-16 3E-20 134.9 10.6 111 6-116 77-190 (635)
53 3v47_A TOLL-like receptor 5B a 99.6 7.8E-16 2.7E-20 130.7 9.9 126 6-135 276-404 (455)
54 1wwl_A Monocyte differentiatio 99.6 5.1E-16 1.7E-20 126.1 8.2 130 6-135 96-237 (312)
55 3vq2_A TLR4, TOLL-like recepto 99.6 8.5E-16 2.9E-20 135.0 10.0 125 6-135 33-162 (606)
56 2xwt_C Thyrotropin receptor; s 99.6 5.6E-16 1.9E-20 121.0 7.8 123 6-134 32-164 (239)
57 4b8c_D Glucose-repressible alc 99.6 4.7E-16 1.6E-20 139.8 8.3 119 11-135 207-325 (727)
58 2z80_A TOLL-like receptor 2, v 99.6 6.6E-16 2.3E-20 127.4 8.5 125 6-133 53-181 (353)
59 2z62_A TOLL-like receptor 4, v 99.6 2.7E-15 9.2E-20 119.6 11.4 111 6-116 53-166 (276)
60 1ogq_A PGIP-2, polygalacturona 99.6 7.3E-16 2.5E-20 125.3 8.2 125 5-135 50-183 (313)
61 4fmz_A Internalin; leucine ric 99.6 4.4E-15 1.5E-19 121.9 12.5 119 7-134 201-319 (347)
62 3o6n_A APL1; leucine-rich repe 99.6 2.6E-15 9E-20 125.3 11.3 106 8-114 48-156 (390)
63 3v47_A TOLL-like receptor 5B a 99.6 1.6E-15 5.4E-20 128.9 10.0 110 6-116 300-412 (455)
64 2je0_A Acidic leucine-rich nuc 99.6 8.5E-16 2.9E-20 111.4 6.8 102 6-108 43-149 (149)
65 2z66_A Variable lymphocyte rec 99.6 1.4E-15 4.9E-20 122.8 8.6 126 6-135 127-257 (306)
66 3oja_B Anopheles plasmodium-re 99.6 2.7E-15 9.4E-20 132.0 11.1 108 7-115 77-187 (597)
67 2xwt_C Thyrotropin receptor; s 99.6 5.8E-16 2E-20 121.0 6.1 123 6-134 56-187 (239)
68 3o6n_A APL1; leucine-rich repe 99.6 1.4E-15 4.9E-20 126.9 8.7 122 6-134 70-194 (390)
69 3o53_A Protein LRIM1, AGAP0063 99.6 1.2E-15 4.2E-20 124.1 7.8 123 6-135 121-246 (317)
70 2z81_A CD282 antigen, TOLL-lik 99.6 3.6E-15 1.2E-19 129.5 11.2 124 6-135 362-506 (549)
71 2id5_A Lingo-1, leucine rich r 99.6 3E-15 1E-19 128.0 10.6 83 7-89 34-119 (477)
72 1m9s_A Internalin B; cell inva 99.6 5.9E-15 2E-19 130.0 12.5 117 7-134 67-183 (605)
73 3zyi_A Leucine-rich repeat-con 99.6 1.9E-15 6.5E-20 128.6 9.0 123 6-134 76-226 (452)
74 2z66_A Variable lymphocyte rec 99.6 1E-15 3.5E-20 123.7 6.9 123 8-134 104-231 (306)
75 1xku_A Decorin; proteoglycan, 99.6 3.7E-15 1.3E-19 121.7 10.2 124 6-133 53-178 (330)
76 1ds9_A Outer arm dynein; leuci 99.6 7.4E-17 2.5E-21 122.7 -0.4 126 4-135 22-149 (198)
77 3zyj_A Leucine-rich repeat-con 99.6 2.7E-15 9.4E-20 127.3 9.3 123 7-134 66-215 (440)
78 1m9s_A Internalin B; cell inva 99.6 7.9E-15 2.7E-19 129.1 12.5 118 6-134 88-205 (605)
79 2z63_A TOLL-like receptor 4, v 99.6 4E-15 1.4E-19 129.6 10.4 125 6-135 29-158 (570)
80 2z7x_B TOLL-like receptor 1, v 99.6 8.2E-15 2.8E-19 126.6 12.2 122 6-134 349-476 (520)
81 1ogq_A PGIP-2, polygalacturona 99.6 1.1E-15 3.8E-20 124.2 6.1 104 7-112 78-187 (313)
82 3zyi_A Leucine-rich repeat-con 99.6 5.2E-15 1.8E-19 126.0 10.1 112 6-119 197-310 (452)
83 3oja_B Anopheles plasmodium-re 99.6 3.3E-15 1.1E-19 131.5 8.7 126 6-135 52-180 (597)
84 2z81_A CD282 antigen, TOLL-lik 99.6 3.7E-15 1.3E-19 129.4 8.5 126 6-134 27-156 (549)
85 1xku_A Decorin; proteoglycan, 99.6 7.9E-15 2.7E-19 119.7 9.8 107 6-116 172-280 (330)
86 3oja_A Leucine-rich immune mol 99.6 3.4E-15 1.2E-19 128.4 7.9 106 7-115 122-230 (487)
87 2z80_A TOLL-like receptor 2, v 99.6 4E-15 1.4E-19 122.6 8.0 106 7-113 78-188 (353)
88 3o53_A Protein LRIM1, AGAP0063 99.6 2.8E-15 9.5E-20 122.0 6.9 103 7-112 146-250 (317)
89 3a79_B TLR6, VLRB.59, TOLL-lik 99.6 9.7E-15 3.3E-19 127.5 10.5 107 6-114 53-161 (562)
90 2z7x_B TOLL-like receptor 1, v 99.6 1E-14 3.5E-19 126.0 10.5 120 5-132 21-144 (520)
91 1ziw_A TOLL-like receptor 3; i 99.6 4.2E-15 1.4E-19 132.3 8.1 108 6-114 26-136 (680)
92 2ft3_A Biglycan; proteoglycan, 99.6 4.1E-15 1.4E-19 121.6 7.3 108 5-116 172-281 (332)
93 3vq2_A TLR4, TOLL-like recepto 99.6 1.4E-14 5E-19 127.2 11.2 109 6-116 57-170 (606)
94 1ziw_A TOLL-like receptor 3; i 99.6 1.9E-14 6.4E-19 128.1 11.5 107 8-115 483-600 (680)
95 3oja_A Leucine-rich immune mol 99.6 4.8E-15 1.6E-19 127.5 7.4 122 6-132 145-268 (487)
96 1dce_A Protein (RAB geranylger 99.6 1.1E-14 3.9E-19 127.3 9.7 100 6-106 464-567 (567)
97 3t6q_A CD180 antigen; protein- 99.6 9.1E-15 3.1E-19 128.5 9.1 108 6-114 34-144 (606)
98 3a79_B TLR6, VLRB.59, TOLL-lik 99.5 2.2E-14 7.7E-19 125.2 11.4 122 6-134 378-505 (562)
99 4fmz_A Internalin; leucine ric 99.5 6.1E-14 2.1E-18 115.0 13.3 103 8-115 69-171 (347)
100 1wwl_A Monocyte differentiatio 99.5 8.8E-15 3E-19 118.7 7.6 127 6-134 122-261 (312)
101 4glp_A Monocyte differentiatio 99.5 6.2E-15 2.1E-19 119.5 6.6 120 6-134 170-302 (310)
102 2ft3_A Biglycan; proteoglycan, 99.5 2.8E-14 9.4E-19 116.7 10.3 105 6-113 55-161 (332)
103 3bz5_A Internalin-J, INLJ; leu 99.5 2.9E-14 1E-18 121.7 10.6 113 6-133 43-155 (457)
104 3t6q_A CD180 antigen; protein- 99.5 3.3E-14 1.1E-18 124.9 11.2 120 6-129 58-180 (606)
105 4ecn_A Leucine-rich repeat pro 99.5 4.8E-14 1.7E-18 128.6 12.5 123 6-134 674-814 (876)
106 4eco_A Uncharacterized protein 99.5 3.3E-14 1.1E-18 126.0 11.1 100 6-107 434-544 (636)
107 4ecn_A Leucine-rich repeat pro 99.5 9E-15 3.1E-19 133.3 7.6 109 7-115 450-589 (876)
108 4glp_A Monocyte differentiatio 99.5 1.5E-14 5.2E-19 117.2 7.7 130 6-135 92-233 (310)
109 4eco_A Uncharacterized protein 99.5 3.3E-14 1.1E-18 126.0 10.1 121 6-134 458-595 (636)
110 2z63_A TOLL-like receptor 4, v 99.5 2.5E-14 8.5E-19 124.6 9.0 125 6-134 397-526 (570)
111 1o6v_A Internalin A; bacterial 99.5 1E-13 3.5E-18 118.4 12.4 118 6-134 244-361 (466)
112 1o6v_A Internalin A; bacterial 99.5 1.8E-13 6E-18 116.9 13.3 119 6-135 222-340 (466)
113 2r9u_A Variable lymphocyte rec 99.5 7.2E-14 2.5E-18 104.1 8.9 87 5-91 33-122 (174)
114 3rgz_A Protein brassinosteroid 99.5 7.4E-14 2.5E-18 126.2 9.9 105 7-112 396-503 (768)
115 3j0a_A TOLL-like receptor 5; m 99.5 5.4E-14 1.8E-18 128.3 8.7 127 6-134 25-156 (844)
116 3g39_A Variable lymphocyte rec 99.5 9.4E-14 3.2E-18 103.1 8.5 86 5-90 30-118 (170)
117 3rgz_A Protein brassinosteroid 99.5 1.2E-13 4.2E-18 124.8 10.2 125 6-135 419-547 (768)
118 3cvr_A Invasion plasmid antige 99.5 1.4E-13 4.8E-18 120.2 9.5 111 6-134 121-238 (571)
119 3cvr_A Invasion plasmid antige 99.5 2.2E-13 7.6E-18 119.0 10.3 99 6-115 141-246 (571)
120 3j0a_A TOLL-like receptor 5; m 99.5 2.6E-13 8.9E-18 123.8 11.1 110 6-115 49-164 (844)
121 2ca6_A RAN GTPase-activating p 99.4 6.1E-14 2.1E-18 116.9 5.8 131 5-135 159-312 (386)
122 1jl5_A Outer protein YOPM; leu 99.4 4.3E-13 1.5E-17 114.4 9.7 80 6-90 132-211 (454)
123 2ca6_A RAN GTPase-activating p 99.4 2.1E-13 7.1E-18 113.6 7.4 130 5-136 122-284 (386)
124 3bz5_A Internalin-J, INLJ; leu 99.4 7.6E-13 2.6E-17 112.9 10.9 115 6-133 65-198 (457)
125 2ast_B S-phase kinase-associat 99.4 3.2E-13 1.1E-17 110.1 7.1 128 7-134 95-230 (336)
126 3g06_A SSPH2 (leucine-rich rep 99.4 9.5E-13 3.3E-17 116.2 10.5 95 7-115 63-157 (622)
127 4ay9_X Follicle-stimulating ho 99.4 4.7E-13 1.6E-17 110.3 7.1 101 7-108 32-137 (350)
128 1jl5_A Outer protein YOPM; leu 99.4 1.6E-12 5.5E-17 110.8 10.3 98 8-115 114-211 (454)
129 3g06_A SSPH2 (leucine-rich rep 99.4 2.4E-12 8.1E-17 113.7 11.3 100 7-114 183-299 (622)
130 2ast_B S-phase kinase-associat 99.4 4.5E-13 1.5E-17 109.3 5.6 127 6-136 71-205 (336)
131 2ifg_A High affinity nerve gro 99.3 7.5E-13 2.6E-17 108.7 6.0 109 6-114 32-143 (347)
132 3rw6_A Nuclear RNA export fact 99.3 3.8E-13 1.3E-17 106.5 3.9 111 27-138 140-263 (267)
133 3goz_A Leucine-rich repeat-con 99.3 3.3E-12 1.1E-16 105.6 9.0 106 7-112 24-151 (362)
134 4ay9_X Follicle-stimulating ho 99.3 2.4E-12 8.1E-17 106.1 5.7 125 9-137 84-237 (350)
135 3goz_A Leucine-rich repeat-con 99.3 3.7E-12 1.3E-16 105.3 6.1 128 6-133 110-260 (362)
136 1z7x_W Ribonuclease inhibitor; 99.2 7.6E-12 2.6E-16 106.2 6.2 130 6-136 200-351 (461)
137 1z7x_W Ribonuclease inhibitor; 99.2 2E-11 6.9E-16 103.5 7.6 127 7-134 30-178 (461)
138 3un9_A NLR family member X1; l 99.1 4.2E-11 1.4E-15 99.5 5.1 130 6-135 102-248 (372)
139 3sb4_A Hypothetical leucine ri 99.1 1.8E-10 6.3E-15 93.8 7.1 100 26-131 224-326 (329)
140 3un9_A NLR family member X1; l 99.1 1.1E-10 3.7E-15 97.0 5.6 110 6-115 127-255 (372)
141 3sb4_A Hypothetical leucine ri 99.1 2.2E-10 7.7E-15 93.4 7.1 78 50-133 225-304 (329)
142 1io0_A Tropomodulin; LRR prote 99.1 1.3E-10 4.4E-15 87.2 5.1 117 21-137 29-162 (185)
143 3rw6_A Nuclear RNA export fact 98.8 8.1E-10 2.8E-14 87.4 2.6 95 10-105 148-257 (267)
144 1io0_A Tropomodulin; LRR prote 98.8 1.3E-08 4.5E-13 76.2 9.1 110 5-114 36-166 (185)
145 3ogk_B Coronatine-insensitive 98.8 5.4E-09 1.9E-13 91.3 6.0 17 70-86 289-305 (592)
146 3ogk_B Coronatine-insensitive 98.8 7.8E-09 2.7E-13 90.3 6.5 124 7-134 166-326 (592)
147 3e4g_A ATP synthase subunit S, 98.7 8E-08 2.7E-12 71.1 8.1 102 27-130 60-171 (176)
148 2p1m_B Transport inhibitor res 98.7 2.3E-08 8E-13 87.2 6.1 127 6-136 373-516 (594)
149 2p1m_B Transport inhibitor res 98.6 4.3E-08 1.5E-12 85.6 5.2 125 6-134 339-489 (594)
150 4fdw_A Leucine rich hypothetic 98.6 1.8E-07 6.1E-12 78.4 8.8 125 3-133 155-307 (401)
151 3rfe_A Platelet glycoprotein I 98.6 3.9E-08 1.3E-12 69.4 3.9 63 54-119 11-75 (130)
152 4fdw_A Leucine rich hypothetic 98.6 2.3E-07 7.8E-12 77.7 8.8 104 6-114 249-360 (401)
153 2ra8_A Uncharacterized protein 98.3 4.2E-07 1.4E-11 75.1 5.2 128 6-135 173-316 (362)
154 3e4g_A ATP synthase subunit S, 98.2 1.9E-06 6.4E-11 63.7 6.0 98 4-102 60-170 (176)
155 2ra8_A Uncharacterized protein 98.2 4.1E-06 1.4E-10 69.2 8.4 127 6-136 140-289 (362)
156 1pgv_A TMD-1, tropomodulin TMD 98.2 4.2E-06 1.4E-10 63.0 7.1 115 23-137 36-168 (197)
157 1pgv_A TMD-1, tropomodulin TMD 98.0 5.1E-05 1.8E-09 57.0 10.5 106 5-110 41-168 (197)
158 3rfe_A Platelet glycoprotein I 98.0 7.8E-06 2.7E-10 57.4 5.0 54 32-87 12-68 (130)
159 4gt6_A Cell surface protein; l 97.7 0.00015 5E-09 60.2 9.5 80 23-106 260-341 (394)
160 4h09_A Hypothetical leucine ri 97.7 7.6E-05 2.6E-09 61.5 7.0 118 8-133 220-340 (379)
161 4h09_A Hypothetical leucine ri 97.5 0.00032 1.1E-08 57.7 8.0 96 8-107 243-341 (379)
162 4fs7_A Uncharacterized protein 97.4 0.00018 6.1E-09 59.7 5.8 83 23-109 292-376 (394)
163 4fs7_A Uncharacterized protein 97.4 0.00036 1.2E-08 57.8 7.1 116 7-133 255-373 (394)
164 4gt6_A Cell surface protein; l 97.3 0.00049 1.7E-08 57.1 7.1 98 8-110 268-368 (394)
165 2lz0_A Uncharacterized protein 70.0 5.1 0.00018 26.0 3.7 43 16-59 7-51 (100)
166 2lz0_A Uncharacterized protein 65.1 8.1 0.00028 25.0 3.9 44 63-108 8-52 (100)
No 1
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=99.85 E-value=5.1e-21 Score=143.21 Aligned_cols=141 Identities=21% Similarity=0.261 Sum_probs=123.4
Q ss_pred CCccEEEeecCCCccchhhhcC-CCCCcEEEcccCCCccccccccCCccCCEEecccCcCCcCchh-hhCCCCCceeecc
Q 027557 5 IRDCPAVLSRNPIREIGDSLLN-MKAITKLSLSNCQVQIIGSSLKSCTELKELRLAHNDIKTLPAE-LAFNKKLQNLDLG 82 (222)
Q Consensus 5 ~~~~~L~L~~n~l~~lp~~~~~-l~~L~~L~L~~n~i~~lp~~~~~l~~L~~L~l~~N~i~~lp~~-~~~l~~L~~L~L~ 82 (222)
..+++|+|++|.|+.+|. +.. .++|++|+|++|.|+.+ ..+..+++|++|++++|+|+.+|.. +..+++|++|+++
T Consensus 19 ~~L~~L~l~~n~l~~i~~-~~~~~~~L~~L~Ls~N~l~~~-~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~ 96 (176)
T 1a9n_A 19 VRDRELDLRGYKIPVIEN-LGATLDQFDAIDFSDNEIRKL-DGFPLLRRLKTLLVNNNRICRIGEGLDQALPDLTELILT 96 (176)
T ss_dssp TSCEEEECTTSCCCSCCC-GGGGTTCCSEEECCSSCCCEE-CCCCCCSSCCEEECCSSCCCEECSCHHHHCTTCCEEECC
T ss_pred CCceEEEeeCCCCchhHH-hhhcCCCCCEEECCCCCCCcc-cccccCCCCCEEECCCCcccccCcchhhcCCCCCEEECC
Confidence 456899999999999964 444 45999999999999999 4799999999999999999998765 5899999999999
Q ss_pred CCccCCCcchHhhcCCCCCCEEEeeCCCCCCchhHHHHHHHhCCccccccCCCCChhhHhhhHHH
Q 027557 83 KNLITRWSELKVLKSLVSLNNLNLQGNPVAEYDKLAKKVKNLLPSLHIFNARPINRITKNEKDNI 147 (222)
Q Consensus 83 ~N~i~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~l~~~~~~~~~~~~~~~~ 147 (222)
+|.|..++.+..+..+++|+.|++++|++...+.++..++..+++|+.++...+...++..+...
T Consensus 97 ~N~i~~~~~~~~l~~l~~L~~L~l~~N~i~~~~~~~~~~~~~l~~L~~Ld~~~n~~~~~~~~~~~ 161 (176)
T 1a9n_A 97 NNSLVELGDLDPLASLKSLTYLCILRNPVTNKKHYRLYVIYKVPQVRVLDFQKVKLKERQEAEKM 161 (176)
T ss_dssp SCCCCCGGGGGGGGGCTTCCEEECCSSGGGGSTTHHHHHHHHCTTCSEETTEECCHHHHHHHHHT
T ss_pred CCcCCcchhhHhhhcCCCCCEEEecCCCCCCcHhHHHHHHHHCCccceeCCCcCCHHHHHHHHHH
Confidence 99999988766889999999999999999999988777888999999999998887666555433
No 2
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=99.83 E-value=2.1e-20 Score=135.96 Aligned_cols=128 Identities=24% Similarity=0.286 Sum_probs=116.0
Q ss_pred CccEEEeecCCCc--cchhhhcCCCCCcEEEcccCCCccccccccCCccCCEEecccCcCCc-CchhhhCCCCCceeecc
Q 027557 6 RDCPAVLSRNPIR--EIGDSLLNMKAITKLSLSNCQVQIIGSSLKSCTELKELRLAHNDIKT-LPAELAFNKKLQNLDLG 82 (222)
Q Consensus 6 ~~~~L~L~~n~l~--~lp~~~~~l~~L~~L~L~~n~i~~lp~~~~~l~~L~~L~l~~N~i~~-lp~~~~~l~~L~~L~L~ 82 (222)
.+++|++++|.++ .+|..+..+++|++|++++|.|+.+ ..+..+++|++|++++|.++. +|..+..+++|++|+++
T Consensus 18 ~l~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~-~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~ls 96 (149)
T 2je0_A 18 DVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLTSI-ANLPKLNKLKKLELSDNRVSGGLEVLAEKCPNLTHLNLS 96 (149)
T ss_dssp GCSEEECTTCBCBTTBCCSCCTTCTTCCEEECTTSCCCCC-TTCCCCTTCCEEECCSSCCCSCTHHHHHHCTTCCEEECT
T ss_pred cCeEEEccCCcCChhHHHHHHhhcCCCcEEECcCCCCCCc-hhhhcCCCCCEEECCCCcccchHHHHhhhCCCCCEEECC
Confidence 4689999999999 8888889999999999999999999 579999999999999999997 77778889999999999
Q ss_pred CCccCCCcchHhhcCCCCCCEEEeeCCCCCCchhHHHHHHHhCCccccccCC
Q 027557 83 KNLITRWSELKVLKSLVSLNNLNLQGNPVAEYDKLAKKVKNLLPSLHIFNAR 134 (222)
Q Consensus 83 ~N~i~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~l~~~ 134 (222)
+|.|++++....+..+++|++|++++|+++..+.++...+..+++|+.|+..
T Consensus 97 ~N~i~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~ 148 (149)
T 2je0_A 97 GNKIKDLSTIEPLKKLENLKSLDLFNCEVTNLNDYRENVFKLLPQLTYLDGY 148 (149)
T ss_dssp TSCCCSHHHHGGGGGCTTCCEEECTTCGGGGSTTHHHHHHHHCTTCCEETTB
T ss_pred CCcCCChHHHHHHhhCCCCCEEeCcCCcccchHHHHHHHHHHCCCcccccCC
Confidence 9999998644589999999999999999999988776678899999998764
No 3
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=99.83 E-value=2.8e-20 Score=137.96 Aligned_cols=132 Identities=26% Similarity=0.256 Sum_probs=119.2
Q ss_pred CCccEEEeecCCCc--cchhhhcCCCCCcEEEcccCCCccccccccCCccCCEEecccCcCCc-CchhhhCCCCCceeec
Q 027557 5 IRDCPAVLSRNPIR--EIGDSLLNMKAITKLSLSNCQVQIIGSSLKSCTELKELRLAHNDIKT-LPAELAFNKKLQNLDL 81 (222)
Q Consensus 5 ~~~~~L~L~~n~l~--~lp~~~~~l~~L~~L~L~~n~i~~lp~~~~~l~~L~~L~l~~N~i~~-lp~~~~~l~~L~~L~L 81 (222)
-.+++|+|++|.++ .+|..+..+++|++|++++|.|+.+ ..+..+++|++|++++|+++. +|..+..+++|++|++
T Consensus 24 ~~L~~L~l~~n~l~~~~i~~~~~~l~~L~~L~l~~n~l~~~-~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L 102 (168)
T 2ell_A 24 AAVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLISV-SNLPKLPKLKKLELSENRIFGGLDMLAEKLPNLTHLNL 102 (168)
T ss_dssp TSCSEEECCSCBCBTTBCSSCCGGGGGCCEEEEESSCCCCC-SSCCCCSSCCEEEEESCCCCSCCCHHHHHCTTCCEEEC
T ss_pred ccCCEEECCCCCCChhhHHHHHHhCCCCCEEeCcCCCCCCh-hhhccCCCCCEEECcCCcCchHHHHHHhhCCCCCEEec
Confidence 35789999999999 8988889999999999999999999 579999999999999999997 7777778999999999
Q ss_pred cCCccCCCcchHhhcCCCCCCEEEeeCCCCCCchhHHHHHHHhCCccccccCCCCC
Q 027557 82 GKNLITRWSELKVLKSLVSLNNLNLQGNPVAEYDKLAKKVKNLLPSLHIFNARPIN 137 (222)
Q Consensus 82 ~~N~i~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~l~~~~~~ 137 (222)
++|.|++++.+..+..+++|++|++++|++...+.++...+..+++|+.|+.....
T Consensus 103 s~N~l~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~~n~ 158 (168)
T 2ell_A 103 SGNKLKDISTLEPLKKLECLKSLDLFNCEVTNLNDYRESVFKLLPQLTYLDGYDRE 158 (168)
T ss_dssp BSSSCCSSGGGGGGSSCSCCCEEECCSSGGGTSTTHHHHHHTTCSSCCEETTEETT
T ss_pred cCCccCcchhHHHHhcCCCCCEEEeeCCcCcchHHHHHHHHHhCccCcEecCCCCC
Confidence 99999998755689999999999999999999998777788899999999886544
No 4
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=99.82 E-value=2.2e-20 Score=141.95 Aligned_cols=113 Identities=24% Similarity=0.279 Sum_probs=88.4
Q ss_pred CccEEEeecCCCccchhhhcCCCCCcEEEcccCCCcccccc-ccCCccCCEEecccCcCCcCch-hhhCCCCCceeeccC
Q 027557 6 RDCPAVLSRNPIREIGDSLLNMKAITKLSLSNCQVQIIGSS-LKSCTELKELRLAHNDIKTLPA-ELAFNKKLQNLDLGK 83 (222)
Q Consensus 6 ~~~~L~L~~n~l~~lp~~~~~l~~L~~L~L~~n~i~~lp~~-~~~l~~L~~L~l~~N~i~~lp~-~~~~l~~L~~L~L~~ 83 (222)
.+++|+|++|.|+.+|..|..+++|++|+|++|.|+.+++. |..+++|++|+|++|+|+.++. .|..+++|++|+|++
T Consensus 32 ~l~~L~L~~n~i~~ip~~~~~l~~L~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~l~~i~~~~f~~l~~L~~L~L~~ 111 (193)
T 2wfh_A 32 DVTELYLDGNQFTLVPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYNRLRCIPPRTFDGLKSLRLLSLHG 111 (193)
T ss_dssp TCCEEECCSSCCCSCCGGGGGCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECCS
T ss_pred CCCEEECCCCcCchhHHHhhcccCCCEEECCCCcCCEeCHhHccCCCCCCEEECCCCccCEeCHHHhCCCCCCCEEECCC
Confidence 45778888888888877788888888888888888887654 7788888888888888887754 477788888888888
Q ss_pred CccCCCcchHhhcCCCCCCEEEeeCCCCCCchhHHH
Q 027557 84 NLITRWSELKVLKSLVSLNNLNLQGNPVAEYDKLAK 119 (222)
Q Consensus 84 N~i~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~ 119 (222)
|.|+.++. ..|..+++|+.|++++|++.+.+...+
T Consensus 112 N~l~~~~~-~~~~~l~~L~~L~L~~N~~~C~c~l~~ 146 (193)
T 2wfh_A 112 NDISVVPE-GAFNDLSALSHLAIGANPLYCDCNMQW 146 (193)
T ss_dssp SCCCBCCT-TTTTTCTTCCEEECCSSCEECSGGGHH
T ss_pred CCCCeeCh-hhhhcCccccEEEeCCCCeecCCcCHH
Confidence 88888776 557778888888888888887766443
No 5
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=99.81 E-value=6.6e-20 Score=142.06 Aligned_cols=125 Identities=24% Similarity=0.239 Sum_probs=100.6
Q ss_pred CccEEEeecCCCccchh-hhcCCCCCcEEEcccCCCccc-cccccCCccCCEEecccCcCCcCchh-hhCCCCCceeecc
Q 027557 6 RDCPAVLSRNPIREIGD-SLLNMKAITKLSLSNCQVQII-GSSLKSCTELKELRLAHNDIKTLPAE-LAFNKKLQNLDLG 82 (222)
Q Consensus 6 ~~~~L~L~~n~l~~lp~-~~~~l~~L~~L~L~~n~i~~l-p~~~~~l~~L~~L~l~~N~i~~lp~~-~~~l~~L~~L~L~ 82 (222)
.+++|+|++|.|+.++. .|..+++|++|+|++|.|+.+ |..|..+++|++|+|++|+|+.+|.. |..+++|+.|+|+
T Consensus 33 ~l~~L~l~~n~i~~i~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~ 112 (220)
T 2v9t_B 33 TITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYGNKITELPKSLFEGLFSLQLLLLN 112 (220)
T ss_dssp TCCEEECCSSCCCEECTTSSTTCTTCCEEECCSSCCCEECTTTTTTCSSCCEEECCSSCCCCCCTTTTTTCTTCCEEECC
T ss_pred CCCEEECCCCcCCCcCHhHhhCCCCCCEEECCCCcCCCcCHHHhhCCcCCCEEECCCCcCCccCHhHccCCCCCCEEECC
Confidence 46888999999988865 678888999999999999886 44588889999999999999888765 6788889999999
Q ss_pred CCccCCCcchHhhcCCCCCCEEEeeCCCCCCchhHHHHHHHhCCccccccCC
Q 027557 83 KNLITRWSELKVLKSLVSLNNLNLQGNPVAEYDKLAKKVKNLLPSLHIFNAR 134 (222)
Q Consensus 83 ~N~i~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~l~~~ 134 (222)
+|.|..+++ ..|..+++|++|++++|.+..++.. .+..+++|+.++..
T Consensus 113 ~N~l~~~~~-~~~~~l~~L~~L~L~~N~l~~~~~~---~~~~l~~L~~L~L~ 160 (220)
T 2v9t_B 113 ANKINCLRV-DAFQDLHNLNLLSLYDNKLQTIAKG---TFSPLRAIQTMHLA 160 (220)
T ss_dssp SSCCCCCCT-TTTTTCTTCCEEECCSSCCSCCCTT---TTTTCTTCCEEECC
T ss_pred CCCCCEeCH-HHcCCCCCCCEEECCCCcCCEECHH---HHhCCCCCCEEEeC
Confidence 998888865 5788888899999999888887652 23467777766544
No 6
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=99.80 E-value=2e-19 Score=140.16 Aligned_cols=124 Identities=21% Similarity=0.205 Sum_probs=100.0
Q ss_pred CccEEEeecCCCccc-hhhhcCCCCCcEEEcccCCCcccccc-ccCCccCCEEecccCcCCcCchh-hhCCCCCceeecc
Q 027557 6 RDCPAVLSRNPIREI-GDSLLNMKAITKLSLSNCQVQIIGSS-LKSCTELKELRLAHNDIKTLPAE-LAFNKKLQNLDLG 82 (222)
Q Consensus 6 ~~~~L~L~~n~l~~l-p~~~~~l~~L~~L~L~~n~i~~lp~~-~~~l~~L~~L~l~~N~i~~lp~~-~~~l~~L~~L~L~ 82 (222)
.+++|+|++|.|+.+ |..|..+++|++|+|++|.|+.+|.. |..+++|++|+|++|+|+.+|.. |..+++|+.|+|+
T Consensus 41 ~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~N~l~~i~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~Ls 120 (229)
T 3e6j_A 41 NAQILYLHDNQITKLEPGVFDSLINLKELYLGSNQLGALPVGVFDSLTQLTVLDLGTNQLTVLPSAVFDRLVHLKELFMC 120 (229)
T ss_dssp TCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECC
T ss_pred CCCEEEcCCCccCccCHHHhhCccCCcEEECCCCCCCCcChhhcccCCCcCEEECCCCcCCccChhHhCcchhhCeEecc
Confidence 467889999998877 45778888999999999999888765 68888899999999998888655 6788889999999
Q ss_pred CCccCCCcchHhhcCCCCCCEEEeeCCCCCCchhHHHHHHHhCCccccccCC
Q 027557 83 KNLITRWSELKVLKSLVSLNNLNLQGNPVAEYDKLAKKVKNLLPSLHIFNAR 134 (222)
Q Consensus 83 ~N~i~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~l~~~ 134 (222)
+|.|..+|. .+..+++|++|++++|.+..++.. .+..+++|+.++..
T Consensus 121 ~N~l~~lp~--~~~~l~~L~~L~L~~N~l~~~~~~---~~~~l~~L~~L~l~ 167 (229)
T 3e6j_A 121 CNKLTELPR--GIERLTHLTHLALDQNQLKSIPHG---AFDRLSSLTHAYLF 167 (229)
T ss_dssp SSCCCSCCT--TGGGCTTCSEEECCSSCCCCCCTT---TTTTCTTCCEEECT
T ss_pred CCcccccCc--ccccCCCCCEEECCCCcCCccCHH---HHhCCCCCCEEEee
Confidence 999888876 778888899999999888887642 33567777766543
No 7
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=99.80 E-value=1e-19 Score=140.99 Aligned_cols=124 Identities=19% Similarity=0.227 Sum_probs=94.7
Q ss_pred ccEEEeecCCCccchh--hhcCCCCCcEEEcccCCCccccc-cccCCccCCEEecccCcCCcCchh-hhCCCCCceeecc
Q 027557 7 DCPAVLSRNPIREIGD--SLLNMKAITKLSLSNCQVQIIGS-SLKSCTELKELRLAHNDIKTLPAE-LAFNKKLQNLDLG 82 (222)
Q Consensus 7 ~~~L~L~~n~l~~lp~--~~~~l~~L~~L~L~~n~i~~lp~-~~~~l~~L~~L~l~~N~i~~lp~~-~~~l~~L~~L~L~ 82 (222)
+++|+|++|.|+.+++ .|..+++|++|+|++|.|+.+++ .|..+++|++|+|++|+|+.++.. |..+++|++|+|+
T Consensus 34 ~~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls 113 (220)
T 2v70_A 34 TAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIEEGAFEGASGVNEILLTSNRLENVQHKMFKGLESLKTLMLR 113 (220)
T ss_dssp CSEEECCSSCCCEECCCCCGGGCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCCCCGGGGTTCSSCCEEECT
T ss_pred CCEEEcCCCcCCccCchhhhccCCCCCEEECCCCcCCEECHHHhCCCCCCCEEECCCCccCccCHhHhcCCcCCCEEECC
Confidence 4688888888887742 46788888888888888888776 388888888888888888877554 7788888888888
Q ss_pred CCccCCCcchHhhcCCCCCCEEEeeCCCCCCchhHHHHHHHhCCccccccCC
Q 027557 83 KNLITRWSELKVLKSLVSLNNLNLQGNPVAEYDKLAKKVKNLLPSLHIFNAR 134 (222)
Q Consensus 83 ~N~i~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~l~~~ 134 (222)
+|.|..+++ ..+..+++|+.|++++|.+..+++. .+..+++|+.++..
T Consensus 114 ~N~l~~~~~-~~~~~l~~L~~L~L~~N~l~~~~~~---~~~~l~~L~~L~L~ 161 (220)
T 2v70_A 114 SNRITCVGN-DSFIGLSSVRLLSLYDNQITTVAPG---AFDTLHSLSTLNLL 161 (220)
T ss_dssp TSCCCCBCT-TSSTTCTTCSEEECTTSCCCCBCTT---TTTTCTTCCEEECC
T ss_pred CCcCCeECH-hHcCCCccCCEEECCCCcCCEECHH---HhcCCCCCCEEEec
Confidence 888888755 5677888888888888888877432 23467777766554
No 8
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=99.80 E-value=1e-19 Score=138.08 Aligned_cols=112 Identities=26% Similarity=0.339 Sum_probs=85.5
Q ss_pred CccEEEeecCCCccchhh--hcCCCCCcEEEcccCCCccc-cccccCCccCCEEecccCcCCcCchh-hhCCCCCceeec
Q 027557 6 RDCPAVLSRNPIREIGDS--LLNMKAITKLSLSNCQVQII-GSSLKSCTELKELRLAHNDIKTLPAE-LAFNKKLQNLDL 81 (222)
Q Consensus 6 ~~~~L~L~~n~l~~lp~~--~~~l~~L~~L~L~~n~i~~l-p~~~~~l~~L~~L~l~~N~i~~lp~~-~~~l~~L~~L~L 81 (222)
.+++|+|++|.|+.+++. |..+++|++|+|++|.|+.+ |..|..+++|++|+|++|+|+.++.. |..+++|++|+|
T Consensus 30 ~l~~L~l~~n~i~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L 109 (192)
T 1w8a_A 30 HTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGENKIKEISNKMFLGLHQLKTLNL 109 (192)
T ss_dssp TCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSCCCCEECSSSSTTCTTCCEEEC
T ss_pred CCCEEECCCCcCCccCCccccccCCCCCEEECCCCCCCCcCHhHcCCcccCCEEECCCCcCCccCHHHhcCCCCCCEEEC
Confidence 567788888888877653 77788888888888888886 44477888888888888888866543 777888888888
Q ss_pred cCCccCCCcchHhhcCCCCCCEEEeeCCCCCCchhHH
Q 027557 82 GKNLITRWSELKVLKSLVSLNNLNLQGNPVAEYDKLA 118 (222)
Q Consensus 82 ~~N~i~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~ 118 (222)
++|+|+++++ ..+..+++|++|++++|+|.+.+...
T Consensus 110 ~~N~l~~~~~-~~~~~l~~L~~L~L~~N~l~c~c~l~ 145 (192)
T 1w8a_A 110 YDNQISCVMP-GSFEHLNSLTSLNLASNPFNCNCHLA 145 (192)
T ss_dssp CSSCCCEECT-TSSTTCTTCCEEECTTCCBCCSGGGH
T ss_pred CCCcCCeeCH-HHhhcCCCCCEEEeCCCCccCcCcch
Confidence 8888887654 46777888888888888888776543
No 9
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=99.79 E-value=2.2e-19 Score=157.14 Aligned_cols=124 Identities=23% Similarity=0.275 Sum_probs=114.8
Q ss_pred CccEEEeecCCCccchhhhcCCCCCcEEEcccCCCccccccccCCccCCEEecccCcCCcCchhhhCCCCCceeeccCCc
Q 027557 6 RDCPAVLSRNPIREIGDSLLNMKAITKLSLSNCQVQIIGSSLKSCTELKELRLAHNDIKTLPAELAFNKKLQNLDLGKNL 85 (222)
Q Consensus 6 ~~~~L~L~~n~l~~lp~~~~~l~~L~~L~L~~n~i~~lp~~~~~l~~L~~L~l~~N~i~~lp~~~~~l~~L~~L~L~~N~ 85 (222)
.+++|+|++|.|+.+|. +..+++|+.|+|++|.|+.+|..+..+++|++|+|++|+|+.+| .+..+++|+.|+|++|+
T Consensus 442 ~L~~L~Ls~n~l~~lp~-~~~l~~L~~L~Ls~N~l~~lp~~~~~l~~L~~L~Ls~N~l~~lp-~l~~l~~L~~L~Ls~N~ 519 (567)
T 1dce_A 442 DVRVLHLAHKDLTVLCH-LEQLLLVTHLDLSHNRLRALPPALAALRCLEVLQASDNALENVD-GVANLPRLQELLLCNNR 519 (567)
T ss_dssp TCSEEECTTSCCSSCCC-GGGGTTCCEEECCSSCCCCCCGGGGGCTTCCEEECCSSCCCCCG-GGTTCSSCCEEECCSSC
T ss_pred CceEEEecCCCCCCCcC-ccccccCcEeecCcccccccchhhhcCCCCCEEECCCCCCCCCc-ccCCCCCCcEEECCCCC
Confidence 46899999999999987 99999999999999999999988999999999999999999998 89999999999999999
Q ss_pred cCCCc-chHhhcCCCCCCEEEeeCCCCCCchhHHHHHHHhCCcccccc
Q 027557 86 ITRWS-ELKVLKSLVSLNNLNLQGNPVAEYDKLAKKVKNLLPSLHIFN 132 (222)
Q Consensus 86 i~~~~-~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~l~ 132 (222)
|++++ + ..++.+++|+.|++++|+++..+++...+...+|+|+.|+
T Consensus 520 l~~~~~p-~~l~~l~~L~~L~L~~N~l~~~~~~~~~l~~~lp~L~~L~ 566 (567)
T 1dce_A 520 LQQSAAI-QPLVSCPRLVLLNLQGNSLCQEEGIQERLAEMLPSVSSIL 566 (567)
T ss_dssp CCSSSTT-GGGGGCTTCCEEECTTSGGGGSSSCTTHHHHHCTTCSEEE
T ss_pred CCCCCCc-HHHhcCCCCCEEEecCCcCCCCccHHHHHHHHCcccCccC
Confidence 99993 2 4899999999999999999999887777778899999875
No 10
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=99.78 E-value=6.4e-21 Score=145.29 Aligned_cols=137 Identities=28% Similarity=0.366 Sum_probs=114.2
Q ss_pred CccEEEeecCCCccchhhhcCCCCCcEEEcccCCCccccccccCCccCCEEecccCcCCcCchhhhCCCCCceeeccCCc
Q 027557 6 RDCPAVLSRNPIREIGDSLLNMKAITKLSLSNCQVQIIGSSLKSCTELKELRLAHNDIKTLPAELAFNKKLQNLDLGKNL 85 (222)
Q Consensus 6 ~~~~L~L~~n~l~~lp~~~~~l~~L~~L~L~~n~i~~lp~~~~~l~~L~~L~l~~N~i~~lp~~~~~l~~L~~L~L~~N~ 85 (222)
.+++|+|++|.|+.+| .+..+++|++|++++|.|+.+|..+..+++|++|++++|+++.+| .+..+++|++|++++|.
T Consensus 49 ~L~~L~ls~n~l~~l~-~~~~l~~L~~L~l~~n~l~~l~~~~~~~~~L~~L~L~~N~l~~l~-~~~~l~~L~~L~l~~N~ 126 (198)
T 1ds9_A 49 ACKHLALSTNNIEKIS-SLSGMENLRILSLGRNLIKKIENLDAVADTLEELWISYNQIASLS-GIEKLVNLRVLYMSNNK 126 (198)
T ss_dssp TCSEEECSEEEESCCC-CHHHHTTCCEEEEEEEEECSCSSHHHHHHHCSEEEEEEEECCCHH-HHHHHHHSSEEEESEEE
T ss_pred CCCEEECCCCCCcccc-ccccCCCCCEEECCCCCcccccchhhcCCcCCEEECcCCcCCcCC-ccccCCCCCEEECCCCc
Confidence 4578889999888887 778888899999999998888876777788999999999998886 68888899999999999
Q ss_pred cCCCcchHhhcCCCCCCEEEeeCCCCCCc-------hhHHHHHHHhCCccccccCCCCChhhHhhh
Q 027557 86 ITRWSELKVLKSLVSLNNLNLQGNPVAEY-------DKLAKKVKNLLPSLHIFNARPINRITKNEK 144 (222)
Q Consensus 86 i~~~~~~~~~~~l~~L~~L~l~~N~l~~~-------~~~~~~~~~~l~~L~~l~~~~~~~~~~~~~ 144 (222)
|..++.+..+..+++|++|++++|++.+. ..+...++..+++|+.+|..++...++..+
T Consensus 127 i~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~~~~~~~~l~~L~~Ld~~~i~~~e~~~a 192 (198)
T 1ds9_A 127 ITNWGEIDKLAALDKLEDLLLAGNPLYNDYKENNATSEYRIEVVKRLPNLKKLDGMPVDVDEREQA 192 (198)
T ss_dssp CCCHHHHHHHTTTTTCSEEEECSCHHHHHHHTTTTHHHHHHHHHHHCSSCSEECCGGGTTTTTTHH
T ss_pred CCchhHHHHHhcCCCCCEEEecCCccccccccccchHHHHHHHHHhCCCcEEECCcccCHHHHHHH
Confidence 99877656788999999999999998776 455666778899999999888876655444
No 11
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=99.78 E-value=5.9e-19 Score=131.35 Aligned_cols=108 Identities=20% Similarity=0.250 Sum_probs=98.0
Q ss_pred CccEEEeecCCCccchhhhcCCCCCcEEEcccCCCcccccc-ccCCccCCEEecccCcCCcCchh-hhCCCCCceeeccC
Q 027557 6 RDCPAVLSRNPIREIGDSLLNMKAITKLSLSNCQVQIIGSS-LKSCTELKELRLAHNDIKTLPAE-LAFNKKLQNLDLGK 83 (222)
Q Consensus 6 ~~~~L~L~~n~l~~lp~~~~~l~~L~~L~L~~n~i~~lp~~-~~~l~~L~~L~l~~N~i~~lp~~-~~~l~~L~~L~L~~ 83 (222)
..++|++++|.|+.+|..+. ++|++|+|++|.|+.+++. |..+++|++|+|++|+|+.+|.. |..+++|++|+|++
T Consensus 10 ~~~~l~~s~n~l~~ip~~~~--~~l~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~ 87 (170)
T 3g39_A 10 SGTTVDCSGKSLASVPTGIP--TTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLND 87 (170)
T ss_dssp ETTEEECTTSCCSSCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCS
T ss_pred CCCEEEeCCCCcCccCccCC--CCCcEEEcCCCcCCccChhhhcCcccCCEEECCCCCcCccChhhccCCCCCCEEECCC
Confidence 34789999999999997663 8999999999999998554 89999999999999999999765 68999999999999
Q ss_pred CccCCCcchHhhcCCCCCCEEEeeCCCCCCchh
Q 027557 84 NLITRWSELKVLKSLVSLNNLNLQGNPVAEYDK 116 (222)
Q Consensus 84 N~i~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~ 116 (222)
|+|+.+++ ..+..+++|+.|++++|+|.+.+.
T Consensus 88 N~l~~~~~-~~~~~l~~L~~L~L~~N~~~c~c~ 119 (170)
T 3g39_A 88 NQLKSIPR-GAFDNLKSLTHIWLLNNPWDCACS 119 (170)
T ss_dssp SCCCCCCT-TTTTTCTTCCEEECCSSCBCTTBG
T ss_pred CccCEeCH-HHhcCCCCCCEEEeCCCCCCCCch
Confidence 99999987 568999999999999999999875
No 12
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=99.77 E-value=1.1e-18 Score=135.19 Aligned_cols=103 Identities=24% Similarity=0.331 Sum_probs=51.7
Q ss_pred EEEeecCCCccchhhhcCCCCCcEEEcccCCCcccccc-ccCCccCCEEecccCcCCcC-chhhhCCCCCceeeccCCcc
Q 027557 9 PAVLSRNPIREIGDSLLNMKAITKLSLSNCQVQIIGSS-LKSCTELKELRLAHNDIKTL-PAELAFNKKLQNLDLGKNLI 86 (222)
Q Consensus 9 ~L~L~~n~l~~lp~~~~~l~~L~~L~L~~n~i~~lp~~-~~~l~~L~~L~l~~N~i~~l-p~~~~~l~~L~~L~L~~N~i 86 (222)
.++++++.++.+|..+. ++|+.|+|++|.|+.++.. |..+++|++|+|++|+|+.+ |..|..+++|++|+|++|.|
T Consensus 15 ~v~c~~~~l~~iP~~l~--~~l~~L~l~~n~i~~i~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~l 92 (220)
T 2v9t_B 15 IVDCRGKGLTEIPTNLP--ETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYGNKI 92 (220)
T ss_dssp EEECTTSCCSSCCSSCC--TTCCEEECCSSCCCEECTTSSTTCTTCCEEECCSSCCCEECTTTTTTCSSCCEEECCSSCC
T ss_pred EEEcCCCCcCcCCCccC--cCCCEEECCCCcCCCcCHhHhhCCCCCCEEECCCCcCCCcCHHHhhCCcCCCEEECCCCcC
Confidence 44555555555544332 3455555555555554442 45555555555555555543 33455555555555555555
Q ss_pred CCCcchHhhcCCCCCCEEEeeCCCCCCc
Q 027557 87 TRWSELKVLKSLVSLNNLNLQGNPVAEY 114 (222)
Q Consensus 87 ~~~~~~~~~~~l~~L~~L~l~~N~l~~~ 114 (222)
+.++. ..|..+++|+.|++++|.+..+
T Consensus 93 ~~l~~-~~f~~l~~L~~L~L~~N~l~~~ 119 (220)
T 2v9t_B 93 TELPK-SLFEGLFSLQLLLLNANKINCL 119 (220)
T ss_dssp CCCCT-TTTTTCTTCCEEECCSSCCCCC
T ss_pred CccCH-hHccCCCCCCEEECCCCCCCEe
Confidence 55544 3344555555555555555544
No 13
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=99.77 E-value=2e-18 Score=134.45 Aligned_cols=108 Identities=23% Similarity=0.271 Sum_probs=64.9
Q ss_pred ccEEEeecCCCccchh-hhcCCCCCcEEEcccCCCcccccc-ccCCccCCEEecccCcCCcCchhhhCCCCCceeeccCC
Q 027557 7 DCPAVLSRNPIREIGD-SLLNMKAITKLSLSNCQVQIIGSS-LKSCTELKELRLAHNDIKTLPAELAFNKKLQNLDLGKN 84 (222)
Q Consensus 7 ~~~L~L~~n~l~~lp~-~~~~l~~L~~L~L~~n~i~~lp~~-~~~l~~L~~L~l~~N~i~~lp~~~~~l~~L~~L~L~~N 84 (222)
+++|+|++|.|+.+|. .|..+++|++|+|++|.|+.+|.. |..+++|++|+|++|+|+.+|..+..+++|++|+|++|
T Consensus 66 L~~L~L~~N~l~~i~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~Ls~N~l~~lp~~~~~l~~L~~L~L~~N 145 (229)
T 3e6j_A 66 LKELYLGSNQLGALPVGVFDSLTQLTVLDLGTNQLTVLPSAVFDRLVHLKELFMCCNKLTELPRGIERLTHLTHLALDQN 145 (229)
T ss_dssp CCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCSCCTTGGGCTTCSEEECCSS
T ss_pred CcEEECCCCCCCCcChhhcccCCCcCEEECCCCcCCccChhHhCcchhhCeEeccCCcccccCcccccCCCCCEEECCCC
Confidence 4566666666665553 345566666666666666665544 45566666666666666666655666666666666666
Q ss_pred ccCCCcchHhhcCCCCCCEEEeeCCCCCCch
Q 027557 85 LITRWSELKVLKSLVSLNNLNLQGNPVAEYD 115 (222)
Q Consensus 85 ~i~~~~~~~~~~~l~~L~~L~l~~N~l~~~~ 115 (222)
.|..++. ..+..+++|+.|++++|++.+.+
T Consensus 146 ~l~~~~~-~~~~~l~~L~~L~l~~N~~~c~c 175 (229)
T 3e6j_A 146 QLKSIPH-GAFDRLSSLTHAYLFGNPWDCEC 175 (229)
T ss_dssp CCCCCCT-TTTTTCTTCCEEECTTSCBCTTB
T ss_pred cCCccCH-HHHhCCCCCCEEEeeCCCccCCc
Confidence 6666554 44555666666666666665544
No 14
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=99.77 E-value=2e-18 Score=128.94 Aligned_cols=107 Identities=18% Similarity=0.243 Sum_probs=97.5
Q ss_pred ccEEEeecCCCccchhhhcCCCCCcEEEcccCCCccccc-cccCCccCCEEecccCcCCcCchh-hhCCCCCceeeccCC
Q 027557 7 DCPAVLSRNPIREIGDSLLNMKAITKLSLSNCQVQIIGS-SLKSCTELKELRLAHNDIKTLPAE-LAFNKKLQNLDLGKN 84 (222)
Q Consensus 7 ~~~L~L~~n~l~~lp~~~~~l~~L~~L~L~~n~i~~lp~-~~~~l~~L~~L~l~~N~i~~lp~~-~~~l~~L~~L~L~~N 84 (222)
.+.+++++|.++.+|..+. ++|++|+|++|.|+.+++ .|..+++|++|+|++|+|+.+|.. |..+++|++|+|++|
T Consensus 14 ~~~l~~~~n~l~~iP~~~~--~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~N 91 (174)
T 2r9u_A 14 QTLVNCQNIRLASVPAGIP--TDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLNDN 91 (174)
T ss_dssp SSEEECCSSCCSSCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred CcEEEeCCCCCCccCCCcC--CCCcEEEeCCCCccccCHHHhcCCcCCCEEECCCCCCCccChhHhCCcchhhEEECCCC
Confidence 3689999999999998664 899999999999999855 489999999999999999999876 689999999999999
Q ss_pred ccCCCcchHhhcCCCCCCEEEeeCCCCCCchh
Q 027557 85 LITRWSELKVLKSLVSLNNLNLQGNPVAEYDK 116 (222)
Q Consensus 85 ~i~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~ 116 (222)
+|..+++ ..+..+++|++|++++|+|.+.+.
T Consensus 92 ~l~~l~~-~~~~~l~~L~~L~L~~N~~~c~~~ 122 (174)
T 2r9u_A 92 HLKSIPR-GAFDNLKSLTHIYLYNNPWDCECR 122 (174)
T ss_dssp CCCCCCT-TTTTTCTTCSEEECCSSCBCTTBG
T ss_pred ccceeCH-HHhccccCCCEEEeCCCCcccccc
Confidence 9999987 569999999999999999999875
No 15
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=99.75 E-value=1.2e-17 Score=124.83 Aligned_cols=110 Identities=25% Similarity=0.322 Sum_probs=65.4
Q ss_pred CccEEEeecCCCccchh-hhcCCCCCcEEEcccCCCcccccc-ccCCccCCEEecccCcCCcCchh-hhCCCCCceeecc
Q 027557 6 RDCPAVLSRNPIREIGD-SLLNMKAITKLSLSNCQVQIIGSS-LKSCTELKELRLAHNDIKTLPAE-LAFNKKLQNLDLG 82 (222)
Q Consensus 6 ~~~~L~L~~n~l~~lp~-~~~~l~~L~~L~L~~n~i~~lp~~-~~~l~~L~~L~l~~N~i~~lp~~-~~~l~~L~~L~L~ 82 (222)
.+++|+|++|.++.+|. .+..+++|++|++++|.|+.+|.. +..+++|++|++++|.|+.+|.. +..+++|++|+++
T Consensus 29 ~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~ 108 (177)
T 2o6r_A 29 SATRLELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQSLPDGVFDKLTKLTILYLHENKLQSLPNGVFDKLTQLKELALD 108 (177)
T ss_dssp TCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECC
T ss_pred CCcEEEeCCCcccEeCHHHhcCcccccEEECCCCcceEeChhHccCCCccCEEECCCCCccccCHHHhhCCcccCEEECc
Confidence 34566666666665543 345566666666666666665544 45666666666666666655443 4556666666666
Q ss_pred CCccCCCcchHhhcCCCCCCEEEeeCCCCCCchh
Q 027557 83 KNLITRWSELKVLKSLVSLNNLNLQGNPVAEYDK 116 (222)
Q Consensus 83 ~N~i~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~ 116 (222)
+|.|+.++. ..+..+++|++|++++|++.+.++
T Consensus 109 ~N~l~~~~~-~~~~~l~~L~~L~l~~N~~~~~~~ 141 (177)
T 2o6r_A 109 TNQLKSVPD-GIFDRLTSLQKIWLHTNPWDCSCP 141 (177)
T ss_dssp SSCCSCCCT-TTTTTCTTCCEEECCSSCBCCCHH
T ss_pred CCcceEeCH-HHhcCCcccCEEEecCCCeeccCc
Confidence 666666554 334556666666666666665544
No 16
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=99.74 E-value=6.7e-18 Score=130.70 Aligned_cols=120 Identities=18% Similarity=0.255 Sum_probs=68.7
Q ss_pred cEEEeecCCCccchhhhcCCCCCcEEEcccCCCccccc-c-ccCCccCCEEecccCcCCcCch-hhhCCCCCceeeccCC
Q 027557 8 CPAVLSRNPIREIGDSLLNMKAITKLSLSNCQVQIIGS-S-LKSCTELKELRLAHNDIKTLPA-ELAFNKKLQNLDLGKN 84 (222)
Q Consensus 8 ~~L~L~~n~l~~lp~~~~~l~~L~~L~L~~n~i~~lp~-~-~~~l~~L~~L~l~~N~i~~lp~-~~~~l~~L~~L~L~~N 84 (222)
+++++++|.++.+|..+. ..+++|+|++|.|+.+++ . |..+++|++|+|++|+|+.++. .|..+++|++|+|++|
T Consensus 14 ~~l~~s~n~l~~iP~~~~--~~~~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~N 91 (220)
T 2v70_A 14 TTVDCSNQKLNKIPEHIP--QYTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIEEGAFEGASGVNEILLTSN 91 (220)
T ss_dssp TEEECCSSCCSSCCSCCC--TTCSEEECCSSCCCEECCCCCGGGCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSS
T ss_pred CEeEeCCCCcccCccCCC--CCCCEEEcCCCcCCccCchhhhccCCCCCEEECCCCcCCEECHHHhCCCCCCCEEECCCC
Confidence 456666666666655432 234566666666666532 2 5566666666666666665543 3666666666666666
Q ss_pred ccCCCcchHhhcCCCCCCEEEeeCCCCCCchhHHHHHHHhCCccccccC
Q 027557 85 LITRWSELKVLKSLVSLNNLNLQGNPVAEYDKLAKKVKNLLPSLHIFNA 133 (222)
Q Consensus 85 ~i~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~l~~ 133 (222)
.|..+++ ..|..+++|+.|++++|.+..+++. .+..+++|+.|+.
T Consensus 92 ~l~~~~~-~~~~~l~~L~~L~Ls~N~l~~~~~~---~~~~l~~L~~L~L 136 (220)
T 2v70_A 92 RLENVQH-KMFKGLESLKTLMLRSNRITCVGND---SFIGLSSVRLLSL 136 (220)
T ss_dssp CCCCCCG-GGGTTCSSCCEEECTTSCCCCBCTT---SSTTCTTCSEEEC
T ss_pred ccCccCH-hHhcCCcCCCEEECCCCcCCeECHh---HcCCCccCCEEEC
Confidence 6666654 4456666666666666666655321 1234555555544
No 17
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=99.74 E-value=1e-17 Score=128.23 Aligned_cols=126 Identities=21% Similarity=0.304 Sum_probs=109.1
Q ss_pred CccEEEeecCCCccchh-hhcCCCCCcEEEcccCCCcccccc-ccCCccCCEEecccCcCCcCchh-hhCCCCCceeecc
Q 027557 6 RDCPAVLSRNPIREIGD-SLLNMKAITKLSLSNCQVQIIGSS-LKSCTELKELRLAHNDIKTLPAE-LAFNKKLQNLDLG 82 (222)
Q Consensus 6 ~~~~L~L~~n~l~~lp~-~~~~l~~L~~L~L~~n~i~~lp~~-~~~l~~L~~L~l~~N~i~~lp~~-~~~l~~L~~L~L~ 82 (222)
.+++|+|++|.|+.++. .|..+++|++|+|++|.|+.+|.. +..+++|++|++++|+++.+|.. +..+++|++|+++
T Consensus 29 ~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~ 108 (208)
T 2o6s_A 29 QTTYLDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNLSTNQLQSLPNGVFDKLTQLKELALN 108 (208)
T ss_dssp TCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECC
T ss_pred CCcEEEcCCCccCcCChhhhcccccCcEEECCCCccCccChhhcCCCCCcCEEECCCCcCCccCHhHhcCccCCCEEEcC
Confidence 46899999999998875 568899999999999999998876 78899999999999999988765 7899999999999
Q ss_pred CCccCCCcchHhhcCCCCCCEEEeeCCCCCCchhHHHHHHHhCCccccccCCC
Q 027557 83 KNLITRWSELKVLKSLVSLNNLNLQGNPVAEYDKLAKKVKNLLPSLHIFNARP 135 (222)
Q Consensus 83 ~N~i~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~l~~~~ 135 (222)
+|.|..++. ..+..+++|++|++++|.+..++.. .+..+++|+.++...
T Consensus 109 ~N~l~~~~~-~~~~~l~~L~~L~l~~N~l~~~~~~---~~~~l~~L~~L~l~~ 157 (208)
T 2o6s_A 109 TNQLQSLPD-GVFDKLTQLKDLRLYQNQLKSVPDG---VFDRLTSLQYIWLHD 157 (208)
T ss_dssp SSCCCCCCT-TTTTTCTTCCEEECCSSCCSCCCTT---TTTTCTTCCEEECCS
T ss_pred CCcCcccCH-hHhccCCcCCEEECCCCccceeCHH---HhccCCCccEEEecC
Confidence 999999886 5688999999999999999988753 335688888876653
No 18
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=99.74 E-value=9.3e-18 Score=132.26 Aligned_cols=125 Identities=23% Similarity=0.317 Sum_probs=80.6
Q ss_pred CccEEEeecCCCccchh-hhcCCCCCcEEEcccCCCcccccc-ccCCccCCEEecccCcCCcCchh-hhCCCCCceeecc
Q 027557 6 RDCPAVLSRNPIREIGD-SLLNMKAITKLSLSNCQVQIIGSS-LKSCTELKELRLAHNDIKTLPAE-LAFNKKLQNLDLG 82 (222)
Q Consensus 6 ~~~~L~L~~n~l~~lp~-~~~~l~~L~~L~L~~n~i~~lp~~-~~~l~~L~~L~l~~N~i~~lp~~-~~~l~~L~~L~L~ 82 (222)
.++.|+|++|.|+.+++ .|..+++|++|+|++|.|+.+++. +..+++|++|++++|+|+.+|.. +..+++|++|+|+
T Consensus 36 ~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~ 115 (251)
T 3m19_A 36 DTEKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGLANNQLASLPLGVFDHLTQLDKLYLG 115 (251)
T ss_dssp TCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECC
T ss_pred CCCEEEccCCCcCccCHhHhcCcccCCEEECCCCcCCccCHhHhccCCcCCEEECCCCcccccChhHhcccCCCCEEEcC
Confidence 35667777777776643 566677777777777777775544 66677777777777777766533 5666777777777
Q ss_pred CCccCCCcchHhhcCCCCCCEEEeeCCCCCCchhHHHHHHHhCCccccccCC
Q 027557 83 KNLITRWSELKVLKSLVSLNNLNLQGNPVAEYDKLAKKVKNLLPSLHIFNAR 134 (222)
Q Consensus 83 ~N~i~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~l~~~ 134 (222)
+|.|..++. ..+..+++|+.|++++|.+..++.. .+..+++|+.|+..
T Consensus 116 ~N~l~~~~~-~~~~~l~~L~~L~Ls~N~l~~~~~~---~~~~l~~L~~L~L~ 163 (251)
T 3m19_A 116 GNQLKSLPS-GVFDRLTKLKELRLNTNQLQSIPAG---AFDKLTNLQTLSLS 163 (251)
T ss_dssp SSCCCCCCT-TTTTTCTTCCEEECCSSCCCCCCTT---TTTTCTTCCEEECC
T ss_pred CCcCCCcCh-hHhccCCcccEEECcCCcCCccCHH---HcCcCcCCCEEECC
Confidence 777776665 4456667777777777766666542 22355666655443
No 19
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=99.74 E-value=7.8e-18 Score=127.81 Aligned_cols=122 Identities=22% Similarity=0.262 Sum_probs=107.4
Q ss_pred ccEEEeecCCCccchhhhcCCCCCcEEEcccCCCccccccccCCccCCEEecccCcCCcCch-hhhCCCCCceeeccCCc
Q 027557 7 DCPAVLSRNPIREIGDSLLNMKAITKLSLSNCQVQIIGSSLKSCTELKELRLAHNDIKTLPA-ELAFNKKLQNLDLGKNL 85 (222)
Q Consensus 7 ~~~L~L~~n~l~~lp~~~~~l~~L~~L~L~~n~i~~lp~~~~~l~~L~~L~l~~N~i~~lp~-~~~~l~~L~~L~L~~N~ 85 (222)
-+++++++|.|+.+|..+. ++|+.|+|++|.|+.+|..+..+++|++|+|++|.|+.++. .|..+++|++|+|++|+
T Consensus 12 ~~~l~~~~~~l~~ip~~~~--~~l~~L~L~~n~i~~ip~~~~~l~~L~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~ 89 (193)
T 2wfh_A 12 DTVVRCSNKGLKVLPKGIP--RDVTELYLDGNQFTLVPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYNR 89 (193)
T ss_dssp TTEEECTTSCCSSCCSCCC--TTCCEEECCSSCCCSCCGGGGGCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC
T ss_pred CCEEEcCCCCCCcCCCCCC--CCCCEEECCCCcCchhHHHhhcccCCCEEECCCCcCCEeCHhHccCCCCCCEEECCCCc
Confidence 3689999999999987653 68999999999999999889999999999999999998865 49999999999999999
Q ss_pred cCCCcchHhhcCCCCCCEEEeeCCCCCCchhHHHHHHHhCCccccccCC
Q 027557 86 ITRWSELKVLKSLVSLNNLNLQGNPVAEYDKLAKKVKNLLPSLHIFNAR 134 (222)
Q Consensus 86 i~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~l~~~ 134 (222)
|+.+++ ..|..+++|++|++++|.+..++.. .+..+++|+.++..
T Consensus 90 l~~i~~-~~f~~l~~L~~L~L~~N~l~~~~~~---~~~~l~~L~~L~L~ 134 (193)
T 2wfh_A 90 LRCIPP-RTFDGLKSLRLLSLHGNDISVVPEG---AFNDLSALSHLAIG 134 (193)
T ss_dssp CCBCCT-TTTTTCTTCCEEECCSSCCCBCCTT---TTTTCTTCCEEECC
T ss_pred cCEeCH-HHhCCCCCCCEEECCCCCCCeeChh---hhhcCccccEEEeC
Confidence 999987 6799999999999999999988753 33467888877654
No 20
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=99.74 E-value=3.5e-18 Score=150.27 Aligned_cols=127 Identities=24% Similarity=0.312 Sum_probs=109.9
Q ss_pred CccEEEeecCCCccchh-hhcCCCCCcEEEcccCCCcccccc-ccCCccCCEEecccCcCCcCchh-hhCCCCCceeecc
Q 027557 6 RDCPAVLSRNPIREIGD-SLLNMKAITKLSLSNCQVQIIGSS-LKSCTELKELRLAHNDIKTLPAE-LAFNKKLQNLDLG 82 (222)
Q Consensus 6 ~~~~L~L~~n~l~~lp~-~~~~l~~L~~L~L~~n~i~~lp~~-~~~l~~L~~L~l~~N~i~~lp~~-~~~l~~L~~L~L~ 82 (222)
.+++|+|++|.|+.||+ .|.++++|++|+|++|.|+.+|+. |..+++|++|+|++|+|+.+|.. |.++++|++|+|+
T Consensus 53 ~~~~LdLs~N~i~~l~~~~f~~l~~L~~L~Ls~N~i~~i~~~~f~~L~~L~~L~Ls~N~l~~l~~~~f~~L~~L~~L~Ls 132 (635)
T 4g8a_A 53 STKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAV 132 (635)
T ss_dssp TCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECGGGGTTCTTCCEEECT
T ss_pred CCCEEEeeCCCCCCCCHHHHhCCCCCCEEECCCCcCCCcChhHhcCCCCCCEEEccCCcCCCCCHHHhcCCCCCCEEECC
Confidence 46899999999999975 799999999999999999999875 89999999999999999998764 8999999999999
Q ss_pred CCccCCCcchHhhcCCCCCCEEEeeCCCCCCchhHHHHHHHhCCccccccCCC
Q 027557 83 KNLITRWSELKVLKSLVSLNNLNLQGNPVAEYDKLAKKVKNLLPSLHIFNARP 135 (222)
Q Consensus 83 ~N~i~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~l~~~~ 135 (222)
+|+|+.+++ ..|+.+++|++|++++|.+...+.. .....+++|+.|+...
T Consensus 133 ~N~l~~l~~-~~~~~L~~L~~L~Ls~N~l~~~~~~--~~~~~l~~L~~L~L~~ 182 (635)
T 4g8a_A 133 ETNLASLEN-FPIGHLKTLKELNVAHNLIQSFKLP--EYFSNLTNLEHLDLSS 182 (635)
T ss_dssp TSCCCCSTT-CCCTTCTTCCEEECCSSCCCCCCCC--GGGGGCTTCCEEECCS
T ss_pred CCcCCCCCh-hhhhcCcccCeeccccCccccCCCc--hhhccchhhhhhcccC
Confidence 999999986 5689999999999999998765310 1335788888876653
No 21
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=99.73 E-value=1.4e-17 Score=134.08 Aligned_cols=108 Identities=31% Similarity=0.351 Sum_probs=53.0
Q ss_pred cEEEeecCCCccchhhhcCCCCCcEEEcccCCCcccccc-ccCCccCCEEecccCcCCcCchh-hhCCCCCceeeccCCc
Q 027557 8 CPAVLSRNPIREIGDSLLNMKAITKLSLSNCQVQIIGSS-LKSCTELKELRLAHNDIKTLPAE-LAFNKKLQNLDLGKNL 85 (222)
Q Consensus 8 ~~L~L~~n~l~~lp~~~~~l~~L~~L~L~~n~i~~lp~~-~~~l~~L~~L~l~~N~i~~lp~~-~~~l~~L~~L~L~~N~ 85 (222)
++|+|++|.|+.+|..+..+++|++|+|++|.|+.+|+. |..+++|++|++++|+|+.+|.. |..+++|+.|+|++|+
T Consensus 80 ~~L~Ls~N~l~~l~~~~~~l~~L~~L~l~~N~l~~l~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~ 159 (290)
T 1p9a_G 80 GTLDLSHNQLQSLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNN 159 (290)
T ss_dssp CEEECCSSCCSSCCCCTTTCTTCCEEECCSSCCCCCCSSTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSC
T ss_pred CEEECCCCcCCcCchhhccCCCCCEEECCCCcCcccCHHHHcCCCCCCEEECCCCCCCccChhhcccccCCCEEECCCCc
Confidence 444455555554444444455555555555555554432 44455555555555555544333 3444555555555555
Q ss_pred cCCCcchHhhcCCCCCCEEEeeCCCCCCchh
Q 027557 86 ITRWSELKVLKSLVSLNNLNLQGNPVAEYDK 116 (222)
Q Consensus 86 i~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~ 116 (222)
|+.++. ..+..+++|+.|++++|.+..+|.
T Consensus 160 l~~l~~-~~~~~l~~L~~L~L~~N~l~~ip~ 189 (290)
T 1p9a_G 160 LTELPA-GLLNGLENLDTLLLQENSLYTIPK 189 (290)
T ss_dssp CSCCCT-TTTTTCTTCCEEECCSSCCCCCCT
T ss_pred CCccCH-HHhcCcCCCCEEECCCCcCCccCh
Confidence 555443 334445555555555555554443
No 22
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=99.72 E-value=2.1e-17 Score=130.17 Aligned_cols=125 Identities=21% Similarity=0.263 Sum_probs=108.9
Q ss_pred CccEEEeecCCCccchh-hhcCCCCCcEEEcccCCCcccccc-ccCCccCCEEecccCcCCcCchh-hhCCCCCceeecc
Q 027557 6 RDCPAVLSRNPIREIGD-SLLNMKAITKLSLSNCQVQIIGSS-LKSCTELKELRLAHNDIKTLPAE-LAFNKKLQNLDLG 82 (222)
Q Consensus 6 ~~~~L~L~~n~l~~lp~-~~~~l~~L~~L~L~~n~i~~lp~~-~~~l~~L~~L~l~~N~i~~lp~~-~~~l~~L~~L~L~ 82 (222)
.+++|+|++|.|+.+++ .|..+++|++|+|++|.|+.+|.. +..+++|++|+|++|+|+.+|.. +..+++|+.|+|+
T Consensus 60 ~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls 139 (251)
T 3m19_A 60 KLTWLNLDYNQLQTLSAGVFDDLTELGTLGLANNQLASLPLGVFDHLTQLDKLYLGGNQLKSLPSGVFDRLTKLKELRLN 139 (251)
T ss_dssp TCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECC
T ss_pred cCCEEECCCCcCCccCHhHhccCCcCCEEECCCCcccccChhHhcccCCCCEEEcCCCcCCCcChhHhccCCcccEEECc
Confidence 46899999999998865 678999999999999999998866 78999999999999999988765 6889999999999
Q ss_pred CCccCCCcchHhhcCCCCCCEEEeeCCCCCCchhHHHHHHHhCCccccccCC
Q 027557 83 KNLITRWSELKVLKSLVSLNNLNLQGNPVAEYDKLAKKVKNLLPSLHIFNAR 134 (222)
Q Consensus 83 ~N~i~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~l~~~ 134 (222)
+|.|..+++ ..+..+++|++|++++|.+..++.. .+..+++|+.++..
T Consensus 140 ~N~l~~~~~-~~~~~l~~L~~L~L~~N~l~~~~~~---~~~~l~~L~~L~l~ 187 (251)
T 3m19_A 140 TNQLQSIPA-GAFDKLTNLQTLSLSTNQLQSVPHG---AFDRLGKLQTITLF 187 (251)
T ss_dssp SSCCCCCCT-TTTTTCTTCCEEECCSSCCSCCCTT---TTTTCTTCCEEECC
T ss_pred CCcCCccCH-HHcCcCcCCCEEECCCCcCCccCHH---HHhCCCCCCEEEee
Confidence 999999986 6789999999999999999988752 33567888877654
No 23
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=99.72 E-value=1.5e-17 Score=136.15 Aligned_cols=122 Identities=20% Similarity=0.363 Sum_probs=64.4
Q ss_pred ccEEEeecCCCccchhhhcCCCCCcEEEcccCCCccccccccCCccCCEEecccCcCCcCchhhhCCCCCce--------
Q 027557 7 DCPAVLSRNPIREIGDSLLNMKAITKLSLSNCQVQIIGSSLKSCTELKELRLAHNDIKTLPAELAFNKKLQN-------- 78 (222)
Q Consensus 7 ~~~L~L~~n~l~~lp~~~~~l~~L~~L~L~~n~i~~lp~~~~~l~~L~~L~l~~N~i~~lp~~~~~l~~L~~-------- 78 (222)
++.|+|++|.|+.+|+.+..+++|++|+|++|.|+.+|..+..+++|++|++++|.++.+|..+..+++|++
T Consensus 83 l~~L~L~~n~l~~lp~~l~~l~~L~~L~L~~n~l~~lp~~~~~l~~L~~L~Ls~n~l~~lp~~l~~l~~L~~L~L~~n~~ 162 (328)
T 4fcg_A 83 RVALELRSVPLPQFPDQAFRLSHLQHMTIDAAGLMELPDTMQQFAGLETLTLARNPLRALPASIASLNRLRELSIRACPE 162 (328)
T ss_dssp CCEEEEESSCCSSCCSCGGGGTTCSEEEEESSCCCCCCSCGGGGTTCSEEEEESCCCCCCCGGGGGCTTCCEEEEEEETT
T ss_pred eeEEEccCCCchhcChhhhhCCCCCEEECCCCCccchhHHHhccCCCCEEECCCCccccCcHHHhcCcCCCEEECCCCCC
Confidence 445555555555555555555555555555555555554455555555555555555555544444444444
Q ss_pred -------------------------eeccCCccCCCcchHhhcCCCCCCEEEeeCCCCCCchhHHHHHHHhCCccccccC
Q 027557 79 -------------------------LDLGKNLITRWSELKVLKSLVSLNNLNLQGNPVAEYDKLAKKVKNLLPSLHIFNA 133 (222)
Q Consensus 79 -------------------------L~L~~N~i~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~l~~ 133 (222)
|+|++|.|+.+|. .++.+++|++|++++|.+..++.. +..+++|+.|+.
T Consensus 163 ~~~~p~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~lp~--~l~~l~~L~~L~L~~N~l~~l~~~----l~~l~~L~~L~L 236 (328)
T 4fcg_A 163 LTELPEPLASTDASGEHQGLVNLQSLRLEWTGIRSLPA--SIANLQNLKSLKIRNSPLSALGPA----IHHLPKLEELDL 236 (328)
T ss_dssp CCCCCSCSEEEC-CCCEEESTTCCEEEEEEECCCCCCG--GGGGCTTCCEEEEESSCCCCCCGG----GGGCTTCCEEEC
T ss_pred ccccChhHhhccchhhhccCCCCCEEECcCCCcCcchH--hhcCCCCCCEEEccCCCCCcCchh----hccCCCCCEEEC
Confidence 4444444444443 455555666666666665555432 234555555544
Q ss_pred C
Q 027557 134 R 134 (222)
Q Consensus 134 ~ 134 (222)
.
T Consensus 237 s 237 (328)
T 4fcg_A 237 R 237 (328)
T ss_dssp T
T ss_pred c
Confidence 3
No 24
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=99.71 E-value=4.4e-17 Score=124.70 Aligned_cols=109 Identities=26% Similarity=0.335 Sum_probs=98.7
Q ss_pred CccEEEeecCCCccchh-hhcCCCCCcEEEcccCCCcccccc-ccCCccCCEEecccCcCCcCchh-hhCCCCCceeecc
Q 027557 6 RDCPAVLSRNPIREIGD-SLLNMKAITKLSLSNCQVQIIGSS-LKSCTELKELRLAHNDIKTLPAE-LAFNKKLQNLDLG 82 (222)
Q Consensus 6 ~~~~L~L~~n~l~~lp~-~~~~l~~L~~L~L~~n~i~~lp~~-~~~l~~L~~L~l~~N~i~~lp~~-~~~l~~L~~L~L~ 82 (222)
.+++|+|++|.|+.+|. .|..+++|++|+|++|.|+.+|.. +..+++|++|++++|+|+.+|.. +..+++|++|+++
T Consensus 53 ~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~ 132 (208)
T 2o6s_A 53 SLTQLYLGGNKLQSLPNGVFNKLTSLTYLNLSTNQLQSLPNGVFDKLTQLKELALNTNQLQSLPDGVFDKLTQLKDLRLY 132 (208)
T ss_dssp TCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECC
T ss_pred cCcEEECCCCccCccChhhcCCCCCcCEEECCCCcCCccCHhHhcCccCCCEEEcCCCcCcccCHhHhccCCcCCEEECC
Confidence 46899999999999876 568899999999999999998876 78999999999999999988765 7889999999999
Q ss_pred CCccCCCcchHhhcCCCCCCEEEeeCCCCCCch
Q 027557 83 KNLITRWSELKVLKSLVSLNNLNLQGNPVAEYD 115 (222)
Q Consensus 83 ~N~i~~~~~~~~~~~l~~L~~L~l~~N~l~~~~ 115 (222)
+|.|++++. ..+..+++|+.|++++|++.+.+
T Consensus 133 ~N~l~~~~~-~~~~~l~~L~~L~l~~N~~~~~~ 164 (208)
T 2o6s_A 133 QNQLKSVPD-GVFDRLTSLQYIWLHDNPWDCTC 164 (208)
T ss_dssp SSCCSCCCT-TTTTTCTTCCEEECCSCCBCCCT
T ss_pred CCccceeCH-HHhccCCCccEEEecCCCeecCC
Confidence 999999887 56889999999999999998754
No 25
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=99.71 E-value=2.6e-17 Score=132.61 Aligned_cols=122 Identities=22% Similarity=0.221 Sum_probs=72.0
Q ss_pred cEEEeecCCCccchhhhcCCCCCcEEEcccCCCccccccccCCccCCEEecccCcCCcCch-hhhCCCCCceeeccCCcc
Q 027557 8 CPAVLSRNPIREIGDSLLNMKAITKLSLSNCQVQIIGSSLKSCTELKELRLAHNDIKTLPA-ELAFNKKLQNLDLGKNLI 86 (222)
Q Consensus 8 ~~L~L~~n~l~~lp~~~~~l~~L~~L~L~~n~i~~lp~~~~~l~~L~~L~l~~N~i~~lp~-~~~~l~~L~~L~L~~N~i 86 (222)
++|+|++|.|+.++.. ..+++|++|+|++|.|+.+|..+..+++|++|++++|+|+.+|. .|..+++|+.|+|++|+|
T Consensus 58 ~~L~L~~n~l~~~~~~-~~l~~L~~L~Ls~N~l~~l~~~~~~l~~L~~L~l~~N~l~~l~~~~~~~l~~L~~L~L~~N~l 136 (290)
T 1p9a_G 58 TQLNLDRAELTKLQVD-GTLPVLGTLDLSHNQLQSLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNEL 136 (290)
T ss_dssp CEEECTTSCCCEEECC-SCCTTCCEEECCSSCCSSCCCCTTTCTTCCEEECCSSCCCCCCSSTTTTCTTCCEEECTTSCC
T ss_pred CEEECCCCccCcccCC-CCCCcCCEEECCCCcCCcCchhhccCCCCCEEECCCCcCcccCHHHHcCCCCCCEEECCCCCC
Confidence 3444444444443322 34455555555555555555555666666677777776666643 366667777777777777
Q ss_pred CCCcchHhhcCCCCCCEEEeeCCCCCCchhHHHHHHHhCCccccccCC
Q 027557 87 TRWSELKVLKSLVSLNNLNLQGNPVAEYDKLAKKVKNLLPSLHIFNAR 134 (222)
Q Consensus 87 ~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~l~~~ 134 (222)
+.++. ..|..+++|+.|++++|.+..++.. ++..+++|+.|+..
T Consensus 137 ~~~~~-~~~~~l~~L~~L~L~~N~l~~l~~~---~~~~l~~L~~L~L~ 180 (290)
T 1p9a_G 137 KTLPP-GLLTPTPKLEKLSLANNNLTELPAG---LLNGLENLDTLLLQ 180 (290)
T ss_dssp CCCCT-TTTTTCTTCCEEECTTSCCSCCCTT---TTTTCTTCCEEECC
T ss_pred CccCh-hhcccccCCCEEECCCCcCCccCHH---HhcCcCCCCEEECC
Confidence 76665 4566677777777777777766542 22356666666543
No 26
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=99.71 E-value=1.6e-17 Score=125.91 Aligned_cols=122 Identities=25% Similarity=0.278 Sum_probs=105.8
Q ss_pred ccEEEeecCCCccchhhhcCCCCCcEEEcccCCCcccccc--ccCCccCCEEecccCcCCcC-chhhhCCCCCceeeccC
Q 027557 7 DCPAVLSRNPIREIGDSLLNMKAITKLSLSNCQVQIIGSS--LKSCTELKELRLAHNDIKTL-PAELAFNKKLQNLDLGK 83 (222)
Q Consensus 7 ~~~L~L~~n~l~~lp~~~~~l~~L~~L~L~~n~i~~lp~~--~~~l~~L~~L~l~~N~i~~l-p~~~~~l~~L~~L~L~~ 83 (222)
.+++++++|.|+.+|..+.. .|++|+|++|.|+.++.. +..+++|++|+|++|+|+.+ |..|..+++|+.|+|++
T Consensus 10 ~~~l~~s~~~l~~ip~~~~~--~l~~L~l~~n~i~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~ 87 (192)
T 1w8a_A 10 GTTVDCTGRGLKEIPRDIPL--HTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGE 87 (192)
T ss_dssp TTEEECTTSCCSSCCSCCCT--TCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCS
T ss_pred CCEEEcCCCCcCcCccCCCC--CCCEEECCCCcCCccCCccccccCCCCCEEECCCCCCCCcCHhHcCCcccCCEEECCC
Confidence 47899999999999976643 899999999999998864 89999999999999999977 66799999999999999
Q ss_pred CccCCCcchHhhcCCCCCCEEEeeCCCCCCchhHHHHHHHhCCccccccCC
Q 027557 84 NLITRWSELKVLKSLVSLNNLNLQGNPVAEYDKLAKKVKNLLPSLHIFNAR 134 (222)
Q Consensus 84 N~i~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~l~~~ 134 (222)
|+|+++++ ..+..+++|++|++++|.+....+. .+..+++|+.++..
T Consensus 88 N~l~~~~~-~~~~~l~~L~~L~L~~N~l~~~~~~---~~~~l~~L~~L~L~ 134 (192)
T 1w8a_A 88 NKIKEISN-KMFLGLHQLKTLNLYDNQISCVMPG---SFEHLNSLTSLNLA 134 (192)
T ss_dssp CCCCEECS-SSSTTCTTCCEEECCSSCCCEECTT---SSTTCTTCCEEECT
T ss_pred CcCCccCH-HHhcCCCCCCEEECCCCcCCeeCHH---HhhcCCCCCEEEeC
Confidence 99999886 5689999999999999999987432 33567888877654
No 27
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=99.70 E-value=5.1e-17 Score=129.52 Aligned_cols=107 Identities=26% Similarity=0.365 Sum_probs=56.4
Q ss_pred ccEEEeecCCCccchhhhcCCCCCcEEEcccCCCcccccc-ccCCccCCEEecccCcCCcCchh-hhCCCCCceeeccCC
Q 027557 7 DCPAVLSRNPIREIGDSLLNMKAITKLSLSNCQVQIIGSS-LKSCTELKELRLAHNDIKTLPAE-LAFNKKLQNLDLGKN 84 (222)
Q Consensus 7 ~~~L~L~~n~l~~lp~~~~~l~~L~~L~L~~n~i~~lp~~-~~~l~~L~~L~l~~N~i~~lp~~-~~~l~~L~~L~L~~N 84 (222)
+++|+|++|.++.++ .+..+++|++|+|++|.|+.+++. +..+++|++|++++|+++.+|.. +..+++|++|++++|
T Consensus 65 L~~L~l~~n~l~~~~-~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n 143 (272)
T 3rfs_A 65 VRYLALGGNKLHDIS-ALKELTNLTYLILTGNQLQSLPNGVFDKLTNLKELVLVENQLQSLPDGVFDKLTNLTYLNLAHN 143 (272)
T ss_dssp CCEEECTTSCCCCCG-GGTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred CcEEECCCCCCCCch-hhcCCCCCCEEECCCCccCccChhHhcCCcCCCEEECCCCcCCccCHHHhccCCCCCEEECCCC
Confidence 355555555555542 445555555555555555554443 45555555555555555544333 445555555555555
Q ss_pred ccCCCcchHhhcCCCCCCEEEeeCCCCCCch
Q 027557 85 LITRWSELKVLKSLVSLNNLNLQGNPVAEYD 115 (222)
Q Consensus 85 ~i~~~~~~~~~~~l~~L~~L~l~~N~l~~~~ 115 (222)
.|+++++ ..+..+++|+.|++++|.+...+
T Consensus 144 ~l~~~~~-~~~~~l~~L~~L~l~~n~l~~~~ 173 (272)
T 3rfs_A 144 QLQSLPK-GVFDKLTNLTELDLSYNQLQSLP 173 (272)
T ss_dssp CCCCCCT-TTTTTCTTCCEEECCSSCCCCCC
T ss_pred ccCccCH-HHhccCccCCEEECCCCCcCccC
Confidence 5555543 33445555555555555555444
No 28
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=99.70 E-value=5.7e-17 Score=129.05 Aligned_cols=107 Identities=21% Similarity=0.313 Sum_probs=50.9
Q ss_pred ccEEEeecCCCccchh-hhcCCCCCcEEEcccCCCcccccc-ccCCccCCEEecccCcCCcCchh-hhCCCCCceeeccC
Q 027557 7 DCPAVLSRNPIREIGD-SLLNMKAITKLSLSNCQVQIIGSS-LKSCTELKELRLAHNDIKTLPAE-LAFNKKLQNLDLGK 83 (222)
Q Consensus 7 ~~~L~L~~n~l~~lp~-~~~~l~~L~~L~L~~n~i~~lp~~-~~~l~~L~~L~l~~N~i~~lp~~-~~~l~~L~~L~L~~ 83 (222)
+++|+|++|.|+.++. .|..+++|++|+|++|.|+.+|.. |..+++|++|++++|+++.+|.. +..+++|++|++++
T Consensus 39 l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~ 118 (270)
T 2o6q_A 39 TKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQTLPAGIFKELKNLETLWVTDNKLQALPIGVFDQLVNLAELRLDR 118 (270)
T ss_dssp CSEEECCSSCCSCCCTTSSSSCTTCCEEECCSSCCSCCCTTTTSSCTTCCEEECCSSCCCCCCTTTTTTCSSCCEEECCS
T ss_pred CCEEECcCCCCCeeCHHHhcCCCCCCEEECCCCccCeeChhhhcCCCCCCEEECCCCcCCcCCHhHcccccCCCEEECCC
Confidence 3455555555555543 445555555555555555555443 34455555555555555544332 34444444444444
Q ss_pred CccCCCcchHhhcCCCCCCEEEeeCCCCCCc
Q 027557 84 NLITRWSELKVLKSLVSLNNLNLQGNPVAEY 114 (222)
Q Consensus 84 N~i~~~~~~~~~~~l~~L~~L~l~~N~l~~~ 114 (222)
|.|..+++ ..+..+++|++|++++|.+..+
T Consensus 119 n~l~~~~~-~~~~~l~~L~~L~Ls~n~l~~~ 148 (270)
T 2o6q_A 119 NQLKSLPP-RVFDSLTKLTYLSLGYNELQSL 148 (270)
T ss_dssp SCCCCCCT-TTTTTCTTCCEEECCSSCCCCC
T ss_pred CccCeeCH-HHhCcCcCCCEEECCCCcCCcc
Confidence 44444433 2334444444444444444333
No 29
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=99.70 E-value=2.8e-17 Score=136.18 Aligned_cols=126 Identities=22% Similarity=0.263 Sum_probs=76.2
Q ss_pred ccEEEeecCCCccchh-hhc-CCCCCcEEEcccCCCcccccc-ccCCccCCEEecccCcCCcCch-hhhCCCCCceeecc
Q 027557 7 DCPAVLSRNPIREIGD-SLL-NMKAITKLSLSNCQVQIIGSS-LKSCTELKELRLAHNDIKTLPA-ELAFNKKLQNLDLG 82 (222)
Q Consensus 7 ~~~L~L~~n~l~~lp~-~~~-~l~~L~~L~L~~n~i~~lp~~-~~~l~~L~~L~l~~N~i~~lp~-~~~~l~~L~~L~L~ 82 (222)
++.|+|++|.|+.++. .+. .+++|++|+|++|.|+.+++. |..+++|++|+|++|+|+.++. .|..+++|+.|+|+
T Consensus 41 l~~L~Ls~N~l~~l~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~ 120 (361)
T 2xot_A 41 TALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLNFISSEAFVPVPNLRYLDLSSNHLHTLDEFLFSDLQALEVLLLY 120 (361)
T ss_dssp CSEEECCSSCCCEECTTSSSSCCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECC
T ss_pred CCEEECCCCCCCccChhhhhhcccccCEEECCCCcCCccChhhccCCCCCCEEECCCCcCCcCCHHHhCCCcCCCEEECC
Confidence 4567777777776654 344 666777777777777666543 6666777777777777666544 36666667777777
Q ss_pred CCccCCCcchHhhcCCCCCCEEEeeCCCCCCchhHHHHHHHhCCccccccC
Q 027557 83 KNLITRWSELKVLKSLVSLNNLNLQGNPVAEYDKLAKKVKNLLPSLHIFNA 133 (222)
Q Consensus 83 ~N~i~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~l~~ 133 (222)
+|.|..+++ ..|..+++|+.|+|++|.+..++.........+++|+.|+.
T Consensus 121 ~N~i~~~~~-~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~~l~~L~~L~L 170 (361)
T 2xot_A 121 NNHIVVVDR-NAFEDMAQLQKLYLSQNQISRFPVELIKDGNKLPKLMLLDL 170 (361)
T ss_dssp SSCCCEECT-TTTTTCTTCCEEECCSSCCCSCCGGGTC----CTTCCEEEC
T ss_pred CCcccEECH-HHhCCcccCCEEECCCCcCCeeCHHHhcCcccCCcCCEEEC
Confidence 776666544 45666666666666666666665431111124556655544
No 30
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=99.70 E-value=6.9e-17 Score=128.59 Aligned_cols=125 Identities=23% Similarity=0.323 Sum_probs=95.3
Q ss_pred CccEEEeecCCCccchhh-hcCCCCCcEEEcccCCCcccccc-ccCCccCCEEecccCcCCcCchh-hhCCCCCceeecc
Q 027557 6 RDCPAVLSRNPIREIGDS-LLNMKAITKLSLSNCQVQIIGSS-LKSCTELKELRLAHNDIKTLPAE-LAFNKKLQNLDLG 82 (222)
Q Consensus 6 ~~~~L~L~~n~l~~lp~~-~~~l~~L~~L~L~~n~i~~lp~~-~~~l~~L~~L~l~~N~i~~lp~~-~~~l~~L~~L~L~ 82 (222)
.+++|+|++|.|+.+|.. |..+++|++|+|++|.|+.+|.. +..+++|++|++++|.++.+|.. |..+++|++|+|+
T Consensus 62 ~L~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls 141 (270)
T 2o6q_A 62 KLRLLYLNDNKLQTLPAGIFKELKNLETLWVTDNKLQALPIGVFDQLVNLAELRLDRNQLKSLPPRVFDSLTKLTYLSLG 141 (270)
T ss_dssp TCCEEECCSSCCSCCCTTTTSSCTTCCEEECCSSCCCCCCTTTTTTCSSCCEEECCSSCCCCCCTTTTTTCTTCCEEECC
T ss_pred CCCEEECCCCccCeeChhhhcCCCCCCEEECCCCcCCcCCHhHcccccCCCEEECCCCccCeeCHHHhCcCcCCCEEECC
Confidence 457888888888888754 56788888888888888887765 67788888888888888877543 6778888888888
Q ss_pred CCccCCCcchHhhcCCCCCCEEEeeCCCCCCchhHHHHHHHhCCccccccCC
Q 027557 83 KNLITRWSELKVLKSLVSLNNLNLQGNPVAEYDKLAKKVKNLLPSLHIFNAR 134 (222)
Q Consensus 83 ~N~i~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~l~~~ 134 (222)
+|.|..++. ..+..+++|+.|++++|.+..++.. .+..+++|+.|+..
T Consensus 142 ~n~l~~~~~-~~~~~l~~L~~L~L~~n~l~~~~~~---~~~~l~~L~~L~L~ 189 (270)
T 2o6q_A 142 YNELQSLPK-GVFDKLTSLKELRLYNNQLKRVPEG---AFDKLTELKTLKLD 189 (270)
T ss_dssp SSCCCCCCT-TTTTTCTTCCEEECCSSCCSCCCTT---TTTTCTTCCEEECC
T ss_pred CCcCCccCH-hHccCCcccceeEecCCcCcEeChh---HhccCCCcCEEECC
Confidence 888888776 4577788888888888888777642 23456777776554
No 31
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=99.70 E-value=4.3e-17 Score=130.57 Aligned_cols=126 Identities=21% Similarity=0.243 Sum_probs=107.4
Q ss_pred CccEEEeecCCCccch-hhhcCCCCCcEEEcccCCCcccccc-ccCCccCCEEecccCcCCcCchh-hhCCCCCceeecc
Q 027557 6 RDCPAVLSRNPIREIG-DSLLNMKAITKLSLSNCQVQIIGSS-LKSCTELKELRLAHNDIKTLPAE-LAFNKKLQNLDLG 82 (222)
Q Consensus 6 ~~~~L~L~~n~l~~lp-~~~~~l~~L~~L~L~~n~i~~lp~~-~~~l~~L~~L~l~~N~i~~lp~~-~~~l~~L~~L~L~ 82 (222)
.+++|+|++|.++.++ ..+..+++|++|++++|.|+.++.. +..+++|++|++++|+++.+|.. +..+++|+.|+++
T Consensus 106 ~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~ 185 (285)
T 1ozn_A 106 RLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLH 185 (285)
T ss_dssp TCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECC
T ss_pred CCCEEECCCCcCCEECHhHhhCCcCCCEEECCCCcccccCHhHhccCCCccEEECCCCcccccCHHHhcCccccCEEECC
Confidence 5689999999999874 5788899999999999999998866 88899999999999999988764 8889999999999
Q ss_pred CCccCCCcchHhhcCCCCCCEEEeeCCCCCCchhHHHHHHHhCCccccccCCC
Q 027557 83 KNLITRWSELKVLKSLVSLNNLNLQGNPVAEYDKLAKKVKNLLPSLHIFNARP 135 (222)
Q Consensus 83 ~N~i~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~l~~~~ 135 (222)
+|.|.++.+ ..+..+++|+.|++++|.+...+.. .+..+++|+.++...
T Consensus 186 ~n~l~~~~~-~~~~~l~~L~~L~l~~n~l~~~~~~---~~~~l~~L~~L~l~~ 234 (285)
T 1ozn_A 186 QNRVAHVHP-HAFRDLGRLMTLYLFANNLSALPTE---ALAPLRALQYLRLND 234 (285)
T ss_dssp SSCCCEECT-TTTTTCTTCCEEECCSSCCSCCCHH---HHTTCTTCCEEECCS
T ss_pred CCcccccCH-hHccCcccccEeeCCCCcCCcCCHH---HcccCcccCEEeccC
Confidence 999998754 5788999999999999999987753 446788888776654
No 32
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=99.69 E-value=1e-16 Score=127.75 Aligned_cols=125 Identities=25% Similarity=0.323 Sum_probs=105.0
Q ss_pred CccEEEeecCCCccchh-hhcCCCCCcEEEcccCCCcccccc-ccCCccCCEEecccCcCCcCchh-hhCCCCCceeecc
Q 027557 6 RDCPAVLSRNPIREIGD-SLLNMKAITKLSLSNCQVQIIGSS-LKSCTELKELRLAHNDIKTLPAE-LAFNKKLQNLDLG 82 (222)
Q Consensus 6 ~~~~L~L~~n~l~~lp~-~~~~l~~L~~L~L~~n~i~~lp~~-~~~l~~L~~L~l~~N~i~~lp~~-~~~l~~L~~L~L~ 82 (222)
.+++|+|++|.|+.+++ .+..+++|++|+|++|.|+.+++. +..+++|++|++++|.++.+|.. +..+++|+.|+++
T Consensus 86 ~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~ 165 (272)
T 3rfs_A 86 NLTYLILTGNQLQSLPNGVFDKLTNLKELVLVENQLQSLPDGVFDKLTNLTYLNLAHNQLQSLPKGVFDKLTNLTELDLS 165 (272)
T ss_dssp TCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECC
T ss_pred CCCEEECCCCccCccChhHhcCCcCCCEEECCCCcCCccCHHHhccCCCCCEEECCCCccCccCHHHhccCccCCEEECC
Confidence 46899999999998865 468899999999999999998766 78899999999999999988655 6889999999999
Q ss_pred CCccCCCcchHhhcCCCCCCEEEeeCCCCCCchhHHHHHHHhCCccccccCC
Q 027557 83 KNLITRWSELKVLKSLVSLNNLNLQGNPVAEYDKLAKKVKNLLPSLHIFNAR 134 (222)
Q Consensus 83 ~N~i~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~l~~~ 134 (222)
+|.|+++++ ..++.+++|++|++++|.+...+.. .+..+++|+.++..
T Consensus 166 ~n~l~~~~~-~~~~~l~~L~~L~L~~N~l~~~~~~---~~~~l~~L~~L~l~ 213 (272)
T 3rfs_A 166 YNQLQSLPE-GVFDKLTQLKDLRLYQNQLKSVPDG---VFDRLTSLQYIWLH 213 (272)
T ss_dssp SSCCCCCCT-TTTTTCTTCCEEECCSSCCSCCCTT---TTTTCTTCCEEECC
T ss_pred CCCcCccCH-HHhcCCccCCEEECCCCcCCccCHH---HHhCCcCCCEEEcc
Confidence 999998876 5678899999999999999887653 33567888877664
No 33
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=99.69 E-value=4.4e-17 Score=133.39 Aligned_cols=84 Identities=17% Similarity=0.253 Sum_probs=76.4
Q ss_pred CCCCCcEEEcccCCCccccccccCCccCCEEecccCcCCcCchhhhCCCCCceeeccCCccCCCcchHhhcCCCCCCEEE
Q 027557 26 NMKAITKLSLSNCQVQIIGSSLKSCTELKELRLAHNDIKTLPAELAFNKKLQNLDLGKNLITRWSELKVLKSLVSLNNLN 105 (222)
Q Consensus 26 ~l~~L~~L~L~~n~i~~lp~~~~~l~~L~~L~l~~N~i~~lp~~~~~l~~L~~L~L~~N~i~~~~~~~~~~~l~~L~~L~ 105 (222)
....++.|+|++|.|+.+|..+..+++|++|+|++|.++.+|..+..+++|++|+|++|.|..+|. .++.+++|++|+
T Consensus 79 ~~~~l~~L~L~~n~l~~lp~~l~~l~~L~~L~L~~n~l~~lp~~~~~l~~L~~L~Ls~n~l~~lp~--~l~~l~~L~~L~ 156 (328)
T 4fcg_A 79 TQPGRVALELRSVPLPQFPDQAFRLSHLQHMTIDAAGLMELPDTMQQFAGLETLTLARNPLRALPA--SIASLNRLRELS 156 (328)
T ss_dssp TSTTCCEEEEESSCCSSCCSCGGGGTTCSEEEEESSCCCCCCSCGGGGTTCSEEEEESCCCCCCCG--GGGGCTTCCEEE
T ss_pred cccceeEEEccCCCchhcChhhhhCCCCCEEECCCCCccchhHHHhccCCCCEEECCCCccccCcH--HHhcCcCCCEEE
Confidence 468999999999999999988999999999999999999999889999999999999999999886 788888888888
Q ss_pred eeCCCC
Q 027557 106 LQGNPV 111 (222)
Q Consensus 106 l~~N~l 111 (222)
+++|.+
T Consensus 157 L~~n~~ 162 (328)
T 4fcg_A 157 IRACPE 162 (328)
T ss_dssp EEEETT
T ss_pred CCCCCC
Confidence 887543
No 34
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=99.69 E-value=2.2e-16 Score=119.94 Aligned_cols=121 Identities=17% Similarity=0.223 Sum_probs=92.2
Q ss_pred CccEEEeecCCCccchhhhcCCCCCcEEEcccCCCccccccccCCccCCEEecccCcCCc-CchhhhCCCCCceeeccCC
Q 027557 6 RDCPAVLSRNPIREIGDSLLNMKAITKLSLSNCQVQIIGSSLKSCTELKELRLAHNDIKT-LPAELAFNKKLQNLDLGKN 84 (222)
Q Consensus 6 ~~~~L~L~~n~l~~lp~~~~~l~~L~~L~L~~n~i~~lp~~~~~l~~L~~L~l~~N~i~~-lp~~~~~l~~L~~L~L~~N 84 (222)
.+++|++++|.|+.+| .+..+++|++|++++|.++.++ .+..+++|++|++++|.++. .|..+..+++|++|++++|
T Consensus 45 ~L~~L~l~~n~i~~l~-~l~~l~~L~~L~l~~n~~~~~~-~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~Ls~n 122 (197)
T 4ezg_A 45 SLTYITLANINVTDLT-GIEYAHNIKDLTINNIHATNYN-PISGLSNLERLRIMGKDVTSDKIPNLSGLTSLTLLDISHS 122 (197)
T ss_dssp TCCEEEEESSCCSCCT-TGGGCTTCSEEEEESCCCSCCG-GGTTCTTCCEEEEECTTCBGGGSCCCTTCTTCCEEECCSS
T ss_pred CccEEeccCCCccChH-HHhcCCCCCEEEccCCCCCcch-hhhcCCCCCEEEeECCccCcccChhhcCCCCCCEEEecCC
Confidence 3578888888888886 6778888888888888777766 67778888888888888874 4566778888888888888
Q ss_pred ccCCCcchHhhcCCCCCCEEEeeCCC-CCCchhHHHHHHHhCCccccccCC
Q 027557 85 LITRWSELKVLKSLVSLNNLNLQGNP-VAEYDKLAKKVKNLLPSLHIFNAR 134 (222)
Q Consensus 85 ~i~~~~~~~~~~~l~~L~~L~l~~N~-l~~~~~~~~~~~~~l~~L~~l~~~ 134 (222)
.|.+... ..++.+++|++|++++|+ +..++. +..+++|+.|+..
T Consensus 123 ~i~~~~~-~~l~~l~~L~~L~L~~n~~i~~~~~-----l~~l~~L~~L~l~ 167 (197)
T 4ezg_A 123 AHDDSIL-TKINTLPKVNSIDLSYNGAITDIMP-----LKTLPELKSLNIQ 167 (197)
T ss_dssp BCBGGGH-HHHTTCSSCCEEECCSCTBCCCCGG-----GGGCSSCCEEECT
T ss_pred ccCcHhH-HHHhhCCCCCEEEccCCCCccccHh-----hcCCCCCCEEECC
Confidence 8876332 467788888888888887 777653 3467778777664
No 35
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=99.69 E-value=2.1e-16 Score=120.07 Aligned_cols=120 Identities=21% Similarity=0.228 Sum_probs=106.0
Q ss_pred CccEEEeecCCCccchhhhcCCCCCcEEEcccCCCcc-ccccccCCccCCEEecccCcCCc-CchhhhCCCCCceeeccC
Q 027557 6 RDCPAVLSRNPIREIGDSLLNMKAITKLSLSNCQVQI-IGSSLKSCTELKELRLAHNDIKT-LPAELAFNKKLQNLDLGK 83 (222)
Q Consensus 6 ~~~~L~L~~n~l~~lp~~~~~l~~L~~L~L~~n~i~~-lp~~~~~l~~L~~L~l~~N~i~~-lp~~~~~l~~L~~L~L~~ 83 (222)
.+++|++++|.++.++ .+..+++|++|++++|.|+. .+..+..+++|++|++++|.++. .|..+..+++|++|++++
T Consensus 67 ~L~~L~l~~n~~~~~~-~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~Ls~n~i~~~~~~~l~~l~~L~~L~L~~ 145 (197)
T 4ezg_A 67 NIKDLTINNIHATNYN-PISGLSNLERLRIMGKDVTSDKIPNLSGLTSLTLLDISHSAHDDSILTKINTLPKVNSIDLSY 145 (197)
T ss_dssp TCSEEEEESCCCSCCG-GGTTCTTCCEEEEECTTCBGGGSCCCTTCTTCCEEECCSSBCBGGGHHHHTTCSSCCEEECCS
T ss_pred CCCEEEccCCCCCcch-hhhcCCCCCEEEeECCccCcccChhhcCCCCCCEEEecCCccCcHhHHHHhhCCCCCEEEccC
Confidence 4689999999988874 78899999999999999998 56679999999999999999995 567799999999999999
Q ss_pred Cc-cCCCcchHhhcCCCCCCEEEeeCCCCCCchhHHHHHHHhCCccccccCC
Q 027557 84 NL-ITRWSELKVLKSLVSLNNLNLQGNPVAEYDKLAKKVKNLLPSLHIFNAR 134 (222)
Q Consensus 84 N~-i~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~l~~~ 134 (222)
|. +..++ .+..+++|+.|++++|++..++. +..+++|+.|+..
T Consensus 146 n~~i~~~~---~l~~l~~L~~L~l~~n~i~~~~~-----l~~l~~L~~L~l~ 189 (197)
T 4ezg_A 146 NGAITDIM---PLKTLPELKSLNIQFDGVHDYRG-----IEDFPKLNQLYAF 189 (197)
T ss_dssp CTBCCCCG---GGGGCSSCCEEECTTBCCCCCTT-----GGGCSSCCEEEEC
T ss_pred CCCccccH---hhcCCCCCCEEECCCCCCcChHH-----hccCCCCCEEEee
Confidence 98 88886 48999999999999999998763 3578999988664
No 36
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=99.68 E-value=4.4e-17 Score=146.42 Aligned_cols=109 Identities=25% Similarity=0.315 Sum_probs=101.2
Q ss_pred CccEEEeecCCCccchhhhcCCCCCcEEEcccCCCccccccccCCccCCEEecccCcCCcCchhhhCCCCCceeeccCCc
Q 027557 6 RDCPAVLSRNPIREIGDSLLNMKAITKLSLSNCQVQIIGSSLKSCTELKELRLAHNDIKTLPAELAFNKKLQNLDLGKNL 85 (222)
Q Consensus 6 ~~~~L~L~~n~l~~lp~~~~~l~~L~~L~L~~n~i~~lp~~~~~l~~L~~L~l~~N~i~~lp~~~~~l~~L~~L~L~~N~ 85 (222)
.+++|+|++|.|..||..+..+++|++|+|++|.|+.+|..|..+++|++|+|++|.|+.+|..|..+++|++|+|++|.
T Consensus 225 ~L~~L~Ls~n~l~~l~~~~~~l~~L~~L~Ls~N~l~~lp~~~~~l~~L~~L~Ls~N~l~~lp~~~~~l~~L~~L~L~~N~ 304 (727)
T 4b8c_D 225 LWHALDLSNLQIFNISANIFKYDFLTRLYLNGNSLTELPAEIKNLSNLRVLDLSHNRLTSLPAELGSCFQLKYFYFFDNM 304 (727)
T ss_dssp CCCEEECTTSCCSCCCGGGGGCCSCSCCBCTTSCCSCCCGGGGGGTTCCEEECTTSCCSSCCSSGGGGTTCSEEECCSSC
T ss_pred CCcEEECCCCCCCCCChhhcCCCCCCEEEeeCCcCcccChhhhCCCCCCEEeCcCCcCCccChhhcCCCCCCEEECCCCC
Confidence 35789999999999998888999999999999999999988999999999999999999999899999999999999999
Q ss_pred cCCCcchHhhcCCCCCCEEEeeCCCCCCchh
Q 027557 86 ITRWSELKVLKSLVSLNNLNLQGNPVAEYDK 116 (222)
Q Consensus 86 i~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~ 116 (222)
|+.+|. .|+.+++|+.|+|++|+|....+
T Consensus 305 l~~lp~--~~~~l~~L~~L~L~~N~l~~~~p 333 (727)
T 4b8c_D 305 VTTLPW--EFGNLCNLQFLGVEGNPLEKQFL 333 (727)
T ss_dssp CCCCCS--STTSCTTCCCEECTTSCCCSHHH
T ss_pred CCccCh--hhhcCCCccEEeCCCCccCCCCh
Confidence 999987 69999999999999999987643
No 37
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=99.68 E-value=1.5e-16 Score=118.84 Aligned_cols=123 Identities=21% Similarity=0.269 Sum_probs=106.6
Q ss_pred CccEEEeecCCCccchhhhcCCCCCcEEEcccCCCcccccc-ccCCccCCEEecccCcCCcCchh-hhCCCCCceeeccC
Q 027557 6 RDCPAVLSRNPIREIGDSLLNMKAITKLSLSNCQVQIIGSS-LKSCTELKELRLAHNDIKTLPAE-LAFNKKLQNLDLGK 83 (222)
Q Consensus 6 ~~~~L~L~~n~l~~lp~~~~~l~~L~~L~L~~n~i~~lp~~-~~~l~~L~~L~l~~N~i~~lp~~-~~~l~~L~~L~L~~ 83 (222)
..+.+++++|+++.+|..+ .++|+.|++++|.|+.+|.. +..+++|++|++++|.|+.+|.. +..+++|+.|++++
T Consensus 8 ~~~~l~~~~~~l~~~p~~~--~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~ 85 (177)
T 2o6r_A 8 SGTEIRCNSKGLTSVPTGI--PSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQSLPDGVFDKLTKLTILYLHE 85 (177)
T ss_dssp ETTEEECCSSCCSSCCTTC--CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCS
T ss_pred CCCEEEecCCCCccCCCCC--CCCCcEEEeCCCcccEeCHHHhcCcccccEEECCCCcceEeChhHccCCCccCEEECCC
Confidence 4578999999999998654 37999999999999998876 78999999999999999988765 78999999999999
Q ss_pred CccCCCcchHhhcCCCCCCEEEeeCCCCCCchhHHHHHHHhCCccccccCC
Q 027557 84 NLITRWSELKVLKSLVSLNNLNLQGNPVAEYDKLAKKVKNLLPSLHIFNAR 134 (222)
Q Consensus 84 N~i~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~l~~~ 134 (222)
|.|++++. ..+..+++|+.|++++|.+..++.. ++..+++|+.++..
T Consensus 86 N~l~~~~~-~~~~~l~~L~~L~l~~N~l~~~~~~---~~~~l~~L~~L~l~ 132 (177)
T 2o6r_A 86 NKLQSLPN-GVFDKLTQLKELALDTNQLKSVPDG---IFDRLTSLQKIWLH 132 (177)
T ss_dssp SCCCCCCT-TTTTTCTTCCEEECCSSCCSCCCTT---TTTTCTTCCEEECC
T ss_pred CCccccCH-HHhhCCcccCEEECcCCcceEeCHH---HhcCCcccCEEEec
Confidence 99999887 5678999999999999999988763 33467888877664
No 38
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=99.67 E-value=2.6e-16 Score=125.99 Aligned_cols=126 Identities=25% Similarity=0.292 Sum_probs=108.8
Q ss_pred CccEEEeecCC-Cccc-hhhhcCCCCCcEEEcccCCCcccccc-ccCCccCCEEecccCcCCcCchh-hhCCCCCceeec
Q 027557 6 RDCPAVLSRNP-IREI-GDSLLNMKAITKLSLSNCQVQIIGSS-LKSCTELKELRLAHNDIKTLPAE-LAFNKKLQNLDL 81 (222)
Q Consensus 6 ~~~~L~L~~n~-l~~l-p~~~~~l~~L~~L~L~~n~i~~lp~~-~~~l~~L~~L~l~~N~i~~lp~~-~~~l~~L~~L~L 81 (222)
.+++|+|++|. ++.+ |..+..+++|++|++++|.++.+++. +..+++|++|++++|+++.+|.. +..+++|++|+|
T Consensus 81 ~L~~L~l~~n~~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l 160 (285)
T 1ozn_A 81 LLEQLDLSDNAQLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFL 160 (285)
T ss_dssp TCCEEECCSCTTCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEEC
T ss_pred CCCEEeCCCCCCccccCHHHhcCCcCCCEEECCCCcCCEECHhHhhCCcCCCEEECCCCcccccCHhHhccCCCccEEEC
Confidence 46899999998 8888 56889999999999999999997544 88999999999999999988755 889999999999
Q ss_pred cCCccCCCcchHhhcCCCCCCEEEeeCCCCCCchhHHHHHHHhCCccccccCCC
Q 027557 82 GKNLITRWSELKVLKSLVSLNNLNLQGNPVAEYDKLAKKVKNLLPSLHIFNARP 135 (222)
Q Consensus 82 ~~N~i~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~l~~~~ 135 (222)
++|.|+.++. ..+..+++|+.|++++|.+...... .+..+++|+.|+...
T Consensus 161 ~~n~l~~~~~-~~~~~l~~L~~L~l~~n~l~~~~~~---~~~~l~~L~~L~l~~ 210 (285)
T 1ozn_A 161 HGNRISSVPE-RAFRGLHSLDRLLLHQNRVAHVHPH---AFRDLGRLMTLYLFA 210 (285)
T ss_dssp CSSCCCEECT-TTTTTCTTCCEEECCSSCCCEECTT---TTTTCTTCCEEECCS
T ss_pred CCCcccccCH-HHhcCccccCEEECCCCcccccCHh---HccCcccccEeeCCC
Confidence 9999999886 5688999999999999999887432 335788888886654
No 39
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=99.67 E-value=1.5e-16 Score=117.79 Aligned_cols=110 Identities=21% Similarity=0.177 Sum_probs=98.7
Q ss_pred CccEEEeecCCCccchhhhcCCCCCcEEEcccCCCcc-ccccccCCccCCEEecccCcCCcCc--hhhhCCCCCceeecc
Q 027557 6 RDCPAVLSRNPIREIGDSLLNMKAITKLSLSNCQVQI-IGSSLKSCTELKELRLAHNDIKTLP--AELAFNKKLQNLDLG 82 (222)
Q Consensus 6 ~~~~L~L~~n~l~~lp~~~~~l~~L~~L~L~~n~i~~-lp~~~~~l~~L~~L~l~~N~i~~lp--~~~~~l~~L~~L~L~ 82 (222)
.+++|+|++|.|+.+ ..+..+++|++|+|++|.|+. +|..+..+++|++|++++|.|+.+| ..+..+++|++|+++
T Consensus 50 ~L~~L~l~~n~l~~~-~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~l~~l~~L~~L~l~ 128 (168)
T 2ell_A 50 NLEFLSLINVGLISV-SNLPKLPKLKKLELSENRIFGGLDMLAEKLPNLTHLNLSGNKLKDISTLEPLKKLECLKSLDLF 128 (168)
T ss_dssp GCCEEEEESSCCCCC-SSCCCCSSCCEEEEESCCCCSCCCHHHHHCTTCCEEECBSSSCCSSGGGGGGSSCSCCCEEECC
T ss_pred CCCEEeCcCCCCCCh-hhhccCCCCCEEECcCCcCchHHHHHHhhCCCCCEEeccCCccCcchhHHHHhcCCCCCEEEee
Confidence 468999999999998 788999999999999999999 6655777999999999999999886 579999999999999
Q ss_pred CCccCCCcch--HhhcCCCCCCEEEeeCCCCCCchh
Q 027557 83 KNLITRWSEL--KVLKSLVSLNNLNLQGNPVAEYDK 116 (222)
Q Consensus 83 ~N~i~~~~~~--~~~~~l~~L~~L~l~~N~l~~~~~ 116 (222)
+|.|+.++.. ..+..+++|++|++++|.+...+.
T Consensus 129 ~N~l~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~ 164 (168)
T 2ell_A 129 NCEVTNLNDYRESVFKLLPQLTYLDGYDREDQEAPD 164 (168)
T ss_dssp SSGGGTSTTHHHHHHTTCSSCCEETTEETTSCBCCS
T ss_pred CCcCcchHHHHHHHHHhCccCcEecCCCCChhhccc
Confidence 9999998752 468899999999999999887653
No 40
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=99.67 E-value=4.9e-16 Score=123.39 Aligned_cols=116 Identities=22% Similarity=0.259 Sum_probs=72.8
Q ss_pred ccEEEeecCCCccchhhhcCCCCCcEEEcccCCCccccccccCCccCCEEecccCcCCcCchhhhCCCCCceeeccCCcc
Q 027557 7 DCPAVLSRNPIREIGDSLLNMKAITKLSLSNCQVQIIGSSLKSCTELKELRLAHNDIKTLPAELAFNKKLQNLDLGKNLI 86 (222)
Q Consensus 7 ~~~L~L~~n~l~~lp~~~~~l~~L~~L~L~~n~i~~lp~~~~~l~~L~~L~l~~N~i~~lp~~~~~l~~L~~L~L~~N~i 86 (222)
+++|++++|.|+.+| .+..+++|++|+|++|.|+.+++ +..+++|++|++++|+++.+|. +.. ++|+.|++++|.|
T Consensus 43 L~~L~l~~n~i~~l~-~l~~l~~L~~L~L~~N~i~~~~~-l~~l~~L~~L~L~~N~l~~l~~-~~~-~~L~~L~L~~N~l 118 (263)
T 1xeu_A 43 VQNFNGDNSNIQSLA-GMQFFTNLKELHLSHNQISDLSP-LKDLTKLEELSVNRNRLKNLNG-IPS-ACLSRLFLDNNEL 118 (263)
T ss_dssp CSEEECTTSCCCCCT-TGGGCTTCCEEECCSSCCCCCGG-GTTCSSCCEEECCSSCCSCCTT-CCC-SSCCEEECCSSCC
T ss_pred CcEEECcCCCcccch-HHhhCCCCCEEECCCCccCCChh-hccCCCCCEEECCCCccCCcCc-ccc-CcccEEEccCCcc
Confidence 466777777777665 56667777777777777777665 6667777777777777766643 222 6666666666666
Q ss_pred CCCcchHhhcCCCCCCEEEeeCCCCCCchhHHHHHHHhCCccccccCC
Q 027557 87 TRWSELKVLKSLVSLNNLNLQGNPVAEYDKLAKKVKNLLPSLHIFNAR 134 (222)
Q Consensus 87 ~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~l~~~ 134 (222)
++++ .+..+++|+.|++++|.+..++. +..+++|+.|+..
T Consensus 119 ~~~~---~l~~l~~L~~L~Ls~N~i~~~~~-----l~~l~~L~~L~L~ 158 (263)
T 1xeu_A 119 RDTD---SLIHLKNLEILSIRNNKLKSIVM-----LGFLSKLEVLDLH 158 (263)
T ss_dssp SBSG---GGTTCTTCCEEECTTSCCCBCGG-----GGGCTTCCEEECT
T ss_pred CCCh---hhcCcccccEEECCCCcCCCChH-----HccCCCCCEEECC
Confidence 6653 35666666666666666666542 2355666655443
No 41
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=99.66 E-value=8.7e-16 Score=123.67 Aligned_cols=118 Identities=31% Similarity=0.379 Sum_probs=81.2
Q ss_pred CccEEEeecCCCccchhhhcCCCCCcEEEcccCCCccccccccCCccCCEEecccCcCCcCchhhhCCCCCceeeccCCc
Q 027557 6 RDCPAVLSRNPIREIGDSLLNMKAITKLSLSNCQVQIIGSSLKSCTELKELRLAHNDIKTLPAELAFNKKLQNLDLGKNL 85 (222)
Q Consensus 6 ~~~~L~L~~n~l~~lp~~~~~l~~L~~L~L~~n~i~~lp~~~~~l~~L~~L~l~~N~i~~lp~~~~~l~~L~~L~L~~N~ 85 (222)
.+++|+|++|.++.+++ +..+++|++|+|++|.|+.+| .+..+++|++|++++|+++.++ .+..+++|+.|++++|.
T Consensus 69 ~L~~L~L~~n~l~~~~~-l~~l~~L~~L~l~~n~l~~~~-~l~~l~~L~~L~L~~n~i~~~~-~l~~l~~L~~L~l~~n~ 145 (291)
T 1h6t_A 69 NVTKLFLNGNKLTDIKP-LANLKNLGWLFLDENKVKDLS-SLKDLKKLKSLSLEHNGISDIN-GLVHLPQLESLYLGNNK 145 (291)
T ss_dssp TCCEEECCSSCCCCCGG-GTTCTTCCEEECCSSCCCCGG-GGTTCTTCCEEECTTSCCCCCG-GGGGCTTCCEEECCSSC
T ss_pred CCCEEEccCCccCCCcc-cccCCCCCEEECCCCcCCCCh-hhccCCCCCEEECCCCcCCCCh-hhcCCCCCCEEEccCCc
Confidence 34677777777777655 667777777777777777765 3677777777777777777663 56677777777777777
Q ss_pred cCCCcchHhhcCCCCCCEEEeeCCCCCCchhHHHHHHHhCCccccccCC
Q 027557 86 ITRWSELKVLKSLVSLNNLNLQGNPVAEYDKLAKKVKNLLPSLHIFNAR 134 (222)
Q Consensus 86 i~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~l~~~ 134 (222)
|..++ .+..+++|++|++++|.+...+. +..+++|+.|+..
T Consensus 146 l~~~~---~l~~l~~L~~L~L~~N~l~~~~~-----l~~l~~L~~L~L~ 186 (291)
T 1h6t_A 146 ITDIT---VLSRLTKLDTLSLEDNQISDIVP-----LAGLTKLQNLYLS 186 (291)
T ss_dssp CCCCG---GGGGCTTCSEEECCSSCCCCCGG-----GTTCTTCCEEECC
T ss_pred CCcch---hhccCCCCCEEEccCCccccchh-----hcCCCccCEEECC
Confidence 77663 46677777777777777776654 2456677666554
No 42
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=99.66 E-value=3.8e-16 Score=129.39 Aligned_cols=118 Identities=22% Similarity=0.275 Sum_probs=100.6
Q ss_pred CccEEEeecCCCccchh-hhcCCCCCcEEEcccCCCcccccc-ccCCccCCEEecccCcCCcC-chhhhCCCCCceeecc
Q 027557 6 RDCPAVLSRNPIREIGD-SLLNMKAITKLSLSNCQVQIIGSS-LKSCTELKELRLAHNDIKTL-PAELAFNKKLQNLDLG 82 (222)
Q Consensus 6 ~~~~L~L~~n~l~~lp~-~~~~l~~L~~L~L~~n~i~~lp~~-~~~l~~L~~L~l~~N~i~~l-p~~~~~l~~L~~L~L~ 82 (222)
.+++|+|++|.|+.+++ .|..+++|++|+|++|.|+.++.. |..+++|++|+|++|+|+.+ |..|..+++|+.|+|+
T Consensus 65 ~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~ 144 (361)
T 2xot_A 65 NLHSLLLSHNHLNFISSEAFVPVPNLRYLDLSSNHLHTLDEFLFSDLQALEVLLLYNNHIVVVDRNAFEDMAQLQKLYLS 144 (361)
T ss_dssp TCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECC
T ss_pred ccCEEECCCCcCCccChhhccCCCCCCEEECCCCcCCcCCHHHhCCCcCCCEEECCCCcccEECHHHhCCcccCCEEECC
Confidence 46899999999999874 789999999999999999998875 89999999999999999977 4569999999999999
Q ss_pred CCccCCCcchHhh---cCCCCCCEEEeeCCCCCCchhHHHHHHHhCCc
Q 027557 83 KNLITRWSELKVL---KSLVSLNNLNLQGNPVAEYDKLAKKVKNLLPS 127 (222)
Q Consensus 83 ~N~i~~~~~~~~~---~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~ 127 (222)
+|.|..++. ..+ ..+++|+.|+|++|.|..++.. .+..++.
T Consensus 145 ~N~l~~l~~-~~~~~~~~l~~L~~L~L~~N~l~~l~~~---~~~~l~~ 188 (361)
T 2xot_A 145 QNQISRFPV-ELIKDGNKLPKLMLLDLSSNKLKKLPLT---DLQKLPA 188 (361)
T ss_dssp SSCCCSCCG-GGTC----CTTCCEEECCSSCCCCCCHH---HHHHSCH
T ss_pred CCcCCeeCH-HHhcCcccCCcCCEEECCCCCCCccCHH---HhhhccH
Confidence 999999987 444 6799999999999999988743 3345665
No 43
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=99.66 E-value=9.1e-16 Score=124.48 Aligned_cols=103 Identities=28% Similarity=0.327 Sum_probs=55.6
Q ss_pred ccEEEeecCCCccchhhhcCCCCCcEEEcccCCCccccccccCCccCCEEecccCcCCcCchhhhCCCCCceeeccCCcc
Q 027557 7 DCPAVLSRNPIREIGDSLLNMKAITKLSLSNCQVQIIGSSLKSCTELKELRLAHNDIKTLPAELAFNKKLQNLDLGKNLI 86 (222)
Q Consensus 7 ~~~L~L~~n~l~~lp~~~~~l~~L~~L~L~~n~i~~lp~~~~~l~~L~~L~l~~N~i~~lp~~~~~l~~L~~L~L~~N~i 86 (222)
+++|+|++|.++.+++ +..+++|++|+|++|.|+.++ .+..+++|++|++++|+++.++ .+..+++|+.|++++|.|
T Consensus 65 L~~L~L~~n~i~~~~~-~~~l~~L~~L~L~~n~l~~~~-~~~~l~~L~~L~l~~n~l~~~~-~l~~l~~L~~L~l~~n~l 141 (308)
T 1h6u_A 65 LIGLELKDNQITDLAP-LKNLTKITELELSGNPLKNVS-AIAGLQSIKTLDLTSTQITDVT-PLAGLSNLQVLYLDLNQI 141 (308)
T ss_dssp CCEEECCSSCCCCCGG-GTTCCSCCEEECCSCCCSCCG-GGTTCTTCCEEECTTSCCCCCG-GGTTCTTCCEEECCSSCC
T ss_pred CCEEEccCCcCCCChh-HccCCCCCEEEccCCcCCCch-hhcCCCCCCEEECCCCCCCCch-hhcCCCCCCEEECCCCcc
Confidence 3555555555555544 555555555555555555554 4555555555555555555553 255555555555555555
Q ss_pred CCCcchHhhcCCCCCCEEEeeCCCCCCch
Q 027557 87 TRWSELKVLKSLVSLNNLNLQGNPVAEYD 115 (222)
Q Consensus 87 ~~~~~~~~~~~l~~L~~L~l~~N~l~~~~ 115 (222)
..++. +..+++|+.|++++|.+..++
T Consensus 142 ~~~~~---l~~l~~L~~L~l~~n~l~~~~ 167 (308)
T 1h6u_A 142 TNISP---LAGLTNLQYLSIGNAQVSDLT 167 (308)
T ss_dssp CCCGG---GGGCTTCCEEECCSSCCCCCG
T ss_pred CcCcc---ccCCCCccEEEccCCcCCCCh
Confidence 55443 445555555555555555444
No 44
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=99.66 E-value=3e-16 Score=125.08 Aligned_cols=125 Identities=24% Similarity=0.319 Sum_probs=93.5
Q ss_pred CccEEEeecCCCccchh-hhcCCCCCcEEEcccCCCcccccc-ccCCccCCEEecccCcCCcCc-hhhhCCCCCceeecc
Q 027557 6 RDCPAVLSRNPIREIGD-SLLNMKAITKLSLSNCQVQIIGSS-LKSCTELKELRLAHNDIKTLP-AELAFNKKLQNLDLG 82 (222)
Q Consensus 6 ~~~~L~L~~n~l~~lp~-~~~~l~~L~~L~L~~n~i~~lp~~-~~~l~~L~~L~l~~N~i~~lp-~~~~~l~~L~~L~L~ 82 (222)
.+++|+|++|.|+.++. .|..+++|++|+|++|.|+.++.. +..+++|++|++++|.++.++ ..+..+++|++|+++
T Consensus 29 ~l~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~ 108 (276)
T 2z62_A 29 STKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAV 108 (276)
T ss_dssp TCCEEECTTCCCCEECTTTTTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECT
T ss_pred CccEEECCCCcccccCHhHhccccCCcEEECCCCcCCccCHHHccCCcCCCEEECCCCccCccChhhhcCCccccEEECC
Confidence 46788888888887765 677888888888888888887653 778888888888888888664 457778888888888
Q ss_pred CCccCCCcchHhhcCCCCCCEEEeeCCCCCC--chhHHHHHHHhCCccccccCCC
Q 027557 83 KNLITRWSELKVLKSLVSLNNLNLQGNPVAE--YDKLAKKVKNLLPSLHIFNARP 135 (222)
Q Consensus 83 ~N~i~~~~~~~~~~~l~~L~~L~l~~N~l~~--~~~~~~~~~~~l~~L~~l~~~~ 135 (222)
+|.+..++. ..++.+++|++|++++|.+.. ++. .+..+++|+.|+...
T Consensus 109 ~n~l~~~~~-~~~~~l~~L~~L~l~~n~l~~~~l~~----~~~~l~~L~~L~Ls~ 158 (276)
T 2z62_A 109 ETNLASLEN-FPIGHLKTLKELNVAHNLIQSFKLPE----YFSNLTNLEHLDLSS 158 (276)
T ss_dssp TSCCCCSTT-CCCTTCTTCCEEECCSSCCCCCCCCG----GGGGCTTCCEEECCS
T ss_pred CCCccccCc-hhcccCCCCCEEECcCCccceecCch----hhccCCCCCEEECCC
Confidence 888877765 357778888888888888776 333 234677777765543
No 45
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=99.65 E-value=8.7e-16 Score=126.30 Aligned_cols=110 Identities=23% Similarity=0.342 Sum_probs=97.7
Q ss_pred ccEEEeecC-CCccchhhhcCCCCCcEEEccc-CCCcccccc-ccCCccCCEEecccCcCCcCch-hhhCCCCCceeecc
Q 027557 7 DCPAVLSRN-PIREIGDSLLNMKAITKLSLSN-CQVQIIGSS-LKSCTELKELRLAHNDIKTLPA-ELAFNKKLQNLDLG 82 (222)
Q Consensus 7 ~~~L~L~~n-~l~~lp~~~~~l~~L~~L~L~~-n~i~~lp~~-~~~l~~L~~L~l~~N~i~~lp~-~~~~l~~L~~L~L~ 82 (222)
-..++++++ +|+.||. +..+++|+.|+|++ |.|+.+|+. |..+++|++|+|++|+|+.+|. .|..+++|+.|+|+
T Consensus 10 ~~~v~~~~~n~l~~ip~-l~~~~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~ 88 (347)
T 2ifg_A 10 SSGLRCTRDGALDSLHH-LPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLS 88 (347)
T ss_dssp SSCEECCSSCCCTTTTT-SCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECC
T ss_pred CCEEEcCCCCCCCccCC-CCCCCCeeEEEccCCCCCCCcChhHhccccCCCEEECCCCccceeCHHHhcCCcCCCEEeCC
Confidence 356799998 9999999 99999999999996 999998865 9999999999999999997755 58999999999999
Q ss_pred CCccCCCcchHhhcCCCCCCEEEeeCCCCCCchhHHH
Q 027557 83 KNLITRWSELKVLKSLVSLNNLNLQGNPVAEYDKLAK 119 (222)
Q Consensus 83 ~N~i~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~ 119 (222)
+|+|+.+|+ ..+..++ |+.|+|.+|+|.+.+...+
T Consensus 89 ~N~l~~~~~-~~~~~~~-L~~l~l~~N~~~c~c~l~~ 123 (347)
T 2ifg_A 89 FNALESLSW-KTVQGLS-LQELVLSGNPLHCSCALRW 123 (347)
T ss_dssp SSCCSCCCS-TTTCSCC-CCEEECCSSCCCCCGGGHH
T ss_pred CCccceeCH-HHcccCC-ceEEEeeCCCccCCCccHH
Confidence 999999987 4555565 9999999999999987544
No 46
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=99.65 E-value=6.8e-16 Score=122.57 Aligned_cols=117 Identities=21% Similarity=0.292 Sum_probs=102.8
Q ss_pred CccEEEeecCCCccchhhhcCCCCCcEEEcccCCCccccccccCCccCCEEecccCcCCcCchhhhCCCCCceeeccCCc
Q 027557 6 RDCPAVLSRNPIREIGDSLLNMKAITKLSLSNCQVQIIGSSLKSCTELKELRLAHNDIKTLPAELAFNKKLQNLDLGKNL 85 (222)
Q Consensus 6 ~~~~L~L~~n~l~~lp~~~~~l~~L~~L~L~~n~i~~lp~~~~~l~~L~~L~l~~N~i~~lp~~~~~l~~L~~L~L~~N~ 85 (222)
.+++|+|++|.|+.+++ +..+++|++|+|++|.|+.+|. +.. ++|++|++++|+|+.++ .+..+++|+.|++++|+
T Consensus 64 ~L~~L~L~~N~i~~~~~-l~~l~~L~~L~L~~N~l~~l~~-~~~-~~L~~L~L~~N~l~~~~-~l~~l~~L~~L~Ls~N~ 139 (263)
T 1xeu_A 64 NLKELHLSHNQISDLSP-LKDLTKLEELSVNRNRLKNLNG-IPS-ACLSRLFLDNNELRDTD-SLIHLKNLEILSIRNNK 139 (263)
T ss_dssp TCCEEECCSSCCCCCGG-GTTCSSCCEEECCSSCCSCCTT-CCC-SSCCEEECCSSCCSBSG-GGTTCTTCCEEECTTSC
T ss_pred CCCEEECCCCccCCChh-hccCCCCCEEECCCCccCCcCc-ccc-CcccEEEccCCccCCCh-hhcCcccccEEECCCCc
Confidence 46899999999999977 8999999999999999999885 344 99999999999999985 68999999999999999
Q ss_pred cCCCcchHhhcCCCCCCEEEeeCCCCCCchhHHHHHHHhCCccccccCC
Q 027557 86 ITRWSELKVLKSLVSLNNLNLQGNPVAEYDKLAKKVKNLLPSLHIFNAR 134 (222)
Q Consensus 86 i~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~l~~~ 134 (222)
|++++ .+..+++|+.|++++|++.+.+ .+..+++|+.|+..
T Consensus 140 i~~~~---~l~~l~~L~~L~L~~N~i~~~~-----~l~~l~~L~~L~l~ 180 (263)
T 1xeu_A 140 LKSIV---MLGFLSKLEVLDLHGNEITNTG-----GLTRLKKVNWIDLT 180 (263)
T ss_dssp CCBCG---GGGGCTTCCEEECTTSCCCBCT-----TSTTCCCCCEEEEE
T ss_pred CCCCh---HHccCCCCCEEECCCCcCcchH-----HhccCCCCCEEeCC
Confidence 99986 5889999999999999999873 33578888877654
No 47
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=99.65 E-value=1.5e-15 Score=123.17 Aligned_cols=119 Identities=22% Similarity=0.253 Sum_probs=107.4
Q ss_pred CccEEEeecCCCccchhhhcCCCCCcEEEcccCCCccccccccCCccCCEEecccCcCCcCchhhhCCCCCceeeccCCc
Q 027557 6 RDCPAVLSRNPIREIGDSLLNMKAITKLSLSNCQVQIIGSSLKSCTELKELRLAHNDIKTLPAELAFNKKLQNLDLGKNL 85 (222)
Q Consensus 6 ~~~~L~L~~n~l~~lp~~~~~l~~L~~L~L~~n~i~~lp~~~~~l~~L~~L~l~~N~i~~lp~~~~~l~~L~~L~L~~N~ 85 (222)
.+++|++++|.++.+| .+..+++|++|+|++|.|+.++. +..+++|++|++++|.++.++ .+..+++|+.|++++|.
T Consensus 42 ~L~~L~l~~~~i~~l~-~~~~l~~L~~L~L~~n~i~~~~~-~~~l~~L~~L~L~~n~l~~~~-~~~~l~~L~~L~l~~n~ 118 (308)
T 1h6u_A 42 GITTLSAFGTGVTTIE-GVQYLNNLIGLELKDNQITDLAP-LKNLTKITELELSGNPLKNVS-AIAGLQSIKTLDLTSTQ 118 (308)
T ss_dssp TCCEEECTTSCCCCCT-TGGGCTTCCEEECCSSCCCCCGG-GTTCCSCCEEECCSCCCSCCG-GGTTCTTCCEEECTTSC
T ss_pred CcCEEEeeCCCccCch-hhhccCCCCEEEccCCcCCCChh-HccCCCCCEEEccCCcCCCch-hhcCCCCCCEEECCCCC
Confidence 3689999999999996 68899999999999999999986 999999999999999999986 79999999999999999
Q ss_pred cCCCcchHhhcCCCCCCEEEeeCCCCCCchhHHHHHHHhCCccccccCCC
Q 027557 86 ITRWSELKVLKSLVSLNNLNLQGNPVAEYDKLAKKVKNLLPSLHIFNARP 135 (222)
Q Consensus 86 i~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~l~~~~ 135 (222)
|..++. +..+++|++|++++|.+...+. +..+++|+.|+...
T Consensus 119 l~~~~~---l~~l~~L~~L~l~~n~l~~~~~-----l~~l~~L~~L~l~~ 160 (308)
T 1h6u_A 119 ITDVTP---LAGLSNLQVLYLDLNQITNISP-----LAGLTNLQYLSIGN 160 (308)
T ss_dssp CCCCGG---GTTCTTCCEEECCSSCCCCCGG-----GGGCTTCCEEECCS
T ss_pred CCCchh---hcCCCCCCEEECCCCccCcCcc-----ccCCCCccEEEccC
Confidence 999864 8999999999999999999875 35788888876654
No 48
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=99.64 E-value=2.4e-16 Score=117.66 Aligned_cols=108 Identities=24% Similarity=0.263 Sum_probs=97.5
Q ss_pred CccEEEeecCCCccchhhhcCCCCCcEEEcccCCCcccccc-ccCCccCCEEecccCcCCcCch--hhhCCCCCceeecc
Q 027557 6 RDCPAVLSRNPIREIGDSLLNMKAITKLSLSNCQVQIIGSS-LKSCTELKELRLAHNDIKTLPA--ELAFNKKLQNLDLG 82 (222)
Q Consensus 6 ~~~~L~L~~n~l~~lp~~~~~l~~L~~L~L~~n~i~~lp~~-~~~l~~L~~L~l~~N~i~~lp~--~~~~l~~L~~L~L~ 82 (222)
.+++|+|++|.|+.+ +.+..+++|++|+|++|.|+.+|+. +..+++|++|++++|+|+.+|. .+..+++|+.|+++
T Consensus 43 ~L~~L~Ls~N~l~~~-~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~l~~l~~L~~L~l~ 121 (176)
T 1a9n_A 43 QFDAIDFSDNEIRKL-DGFPLLRRLKTLLVNNNRICRIGEGLDQALPDLTELILTNNSLVELGDLDPLASLKSLTYLCIL 121 (176)
T ss_dssp CCSEEECCSSCCCEE-CCCCCCSSCCEEECCSSCCCEECSCHHHHCTTCCEEECCSCCCCCGGGGGGGGGCTTCCEEECC
T ss_pred CCCEEECCCCCCCcc-cccccCCCCCEEECCCCcccccCcchhhcCCCCCEEECCCCcCCcchhhHhhhcCCCCCEEEec
Confidence 679999999999998 7889999999999999999999876 4899999999999999999987 78899999999999
Q ss_pred CCccCCCcch--HhhcCCCCCCEEEeeCCCCCCc
Q 027557 83 KNLITRWSEL--KVLKSLVSLNNLNLQGNPVAEY 114 (222)
Q Consensus 83 ~N~i~~~~~~--~~~~~l~~L~~L~l~~N~l~~~ 114 (222)
+|.|..++.. ..+..+++|+.|++++|.+...
T Consensus 122 ~N~i~~~~~~~~~~~~~l~~L~~Ld~~~n~~~~~ 155 (176)
T 1a9n_A 122 RNPVTNKKHYRLYVIYKVPQVRVLDFQKVKLKER 155 (176)
T ss_dssp SSGGGGSTTHHHHHHHHCTTCSEETTEECCHHHH
T ss_pred CCCCCCcHhHHHHHHHHCCccceeCCCcCCHHHH
Confidence 9999988761 1488999999999999986653
No 49
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=99.64 E-value=1.9e-15 Score=121.72 Aligned_cols=118 Identities=25% Similarity=0.325 Sum_probs=105.3
Q ss_pred CccEEEeecCCCccchhhhcCCCCCcEEEcccCCCccccccccCCccCCEEecccCcCCcCchhhhCCCCCceeeccCCc
Q 027557 6 RDCPAVLSRNPIREIGDSLLNMKAITKLSLSNCQVQIIGSSLKSCTELKELRLAHNDIKTLPAELAFNKKLQNLDLGKNL 85 (222)
Q Consensus 6 ~~~~L~L~~n~l~~lp~~~~~l~~L~~L~L~~n~i~~lp~~~~~l~~L~~L~l~~N~i~~lp~~~~~l~~L~~L~L~~N~ 85 (222)
.+++|+|++|.++.+|. +..+++|++|+|++|.|+.++ .+..+++|++|++++|+++.+ ..+..+++|+.|++++|.
T Consensus 91 ~L~~L~l~~n~l~~~~~-l~~l~~L~~L~L~~n~i~~~~-~l~~l~~L~~L~l~~n~l~~~-~~l~~l~~L~~L~L~~N~ 167 (291)
T 1h6t_A 91 NLGWLFLDENKVKDLSS-LKDLKKLKSLSLEHNGISDIN-GLVHLPQLESLYLGNNKITDI-TVLSRLTKLDTLSLEDNQ 167 (291)
T ss_dssp TCCEEECCSSCCCCGGG-GTTCTTCCEEECTTSCCCCCG-GGGGCTTCCEEECCSSCCCCC-GGGGGCTTCSEEECCSSC
T ss_pred CCCEEECCCCcCCCChh-hccCCCCCEEECCCCcCCCCh-hhcCCCCCCEEEccCCcCCcc-hhhccCCCCCEEEccCCc
Confidence 46899999999999854 899999999999999999986 688999999999999999998 578999999999999999
Q ss_pred cCCCcchHhhcCCCCCCEEEeeCCCCCCchhHHHHHHHhCCccccccCC
Q 027557 86 ITRWSELKVLKSLVSLNNLNLQGNPVAEYDKLAKKVKNLLPSLHIFNAR 134 (222)
Q Consensus 86 i~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~l~~~ 134 (222)
|.++++ +..+++|+.|++++|.+..++. +..+++|+.|+..
T Consensus 168 l~~~~~---l~~l~~L~~L~L~~N~i~~l~~-----l~~l~~L~~L~l~ 208 (291)
T 1h6t_A 168 ISDIVP---LAGLTKLQNLYLSKNHISDLRA-----LAGLKNLDVLELF 208 (291)
T ss_dssp CCCCGG---GTTCTTCCEEECCSSCCCBCGG-----GTTCTTCSEEEEE
T ss_pred cccchh---hcCCCccCEEECCCCcCCCChh-----hccCCCCCEEECc
Confidence 999875 8899999999999999999864 3578888887654
No 50
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=99.64 E-value=1.2e-15 Score=130.57 Aligned_cols=115 Identities=22% Similarity=0.273 Sum_probs=104.1
Q ss_pred CCCccEEEeecCCCccchh-hhcCCCCCcEEEcccCCCcccccc-ccCCccCCEEecccCcCCcC-chhhhCCCCCceee
Q 027557 4 GIRDCPAVLSRNPIREIGD-SLLNMKAITKLSLSNCQVQIIGSS-LKSCTELKELRLAHNDIKTL-PAELAFNKKLQNLD 80 (222)
Q Consensus 4 ~~~~~~L~L~~n~l~~lp~-~~~~l~~L~~L~L~~n~i~~lp~~-~~~l~~L~~L~l~~N~i~~l-p~~~~~l~~L~~L~ 80 (222)
+..+++|+|++|.|+.+|. .+..+++|+.|+|++|.|+.++.. +..+++|++|+|++|+++.+ |..|..+++|+.|+
T Consensus 223 ~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ 302 (477)
T 2id5_A 223 GLNLTSLSITHCNLTAVPYLAVRHLVYLRFLNLSYNPISTIEGSMLHELLRLQEIQLVGGQLAVVEPYAFRGLNYLRVLN 302 (477)
T ss_dssp TCCCSEEEEESSCCCSCCHHHHTTCTTCCEEECCSSCCCEECTTSCTTCTTCCEEECCSSCCSEECTTTBTTCTTCCEEE
T ss_pred CccccEEECcCCcccccCHHHhcCccccCeeECCCCcCCccChhhccccccCCEEECCCCccceECHHHhcCcccCCEEE
Confidence 4478999999999999984 789999999999999999998765 89999999999999999976 55699999999999
Q ss_pred ccCCccCCCcchHhhcCCCCCCEEEeeCCCCCCchhHHH
Q 027557 81 LGKNLITRWSELKVLKSLVSLNNLNLQGNPVAEYDKLAK 119 (222)
Q Consensus 81 L~~N~i~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~ 119 (222)
|++|.|+.++. ..|..+++|+.|++++|++.+.+...+
T Consensus 303 L~~N~l~~~~~-~~~~~l~~L~~L~l~~N~l~c~c~~~~ 340 (477)
T 2id5_A 303 VSGNQLTTLEE-SVFHSVGNLETLILDSNPLACDCRLLW 340 (477)
T ss_dssp CCSSCCSCCCG-GGBSCGGGCCEEECCSSCEECSGGGHH
T ss_pred CCCCcCceeCH-hHcCCCcccCEEEccCCCccCccchHh
Confidence 99999999987 678899999999999999999987655
No 51
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=99.63 E-value=2.9e-16 Score=133.22 Aligned_cols=112 Identities=20% Similarity=0.251 Sum_probs=88.9
Q ss_pred CccEEEeecCCCccchhhhcCCCCCcEEEcccCCCccccc-cccCCccCCEEecccCcCCcCc-hhhhCCCCCceeeccC
Q 027557 6 RDCPAVLSRNPIREIGDSLLNMKAITKLSLSNCQVQIIGS-SLKSCTELKELRLAHNDIKTLP-AELAFNKKLQNLDLGK 83 (222)
Q Consensus 6 ~~~~L~L~~n~l~~lp~~~~~l~~L~~L~L~~n~i~~lp~-~~~~l~~L~~L~l~~N~i~~lp-~~~~~l~~L~~L~L~~ 83 (222)
.+++|+|++|.|+.+| .+..+++|+.|+|++|.|+.+++ .|..+++|++|++++|+|+.++ ..|..+++|+.|+|++
T Consensus 186 ~L~~L~L~~n~l~~~~-~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~ 264 (440)
T 3zyj_A 186 NLRYLNLAMCNLREIP-NLTPLIKLDELDLSGNHLSAIRPGSFQGLMHLQKLWMIQSQIQVIERNAFDNLQSLVEINLAH 264 (440)
T ss_dssp SCCEEECTTSCCSSCC-CCTTCSSCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTSSTTCTTCCEEECTT
T ss_pred ccCeecCCCCcCcccc-ccCCCcccCEEECCCCccCccChhhhccCccCCEEECCCCceeEEChhhhcCCCCCCEEECCC
Confidence 3577888888888775 46777888888888888888643 4888888888888888888664 3478888899999999
Q ss_pred CccCCCcchHhhcCCCCCCEEEeeCCCCCCchhHHH
Q 027557 84 NLITRWSELKVLKSLVSLNNLNLQGNPVAEYDKLAK 119 (222)
Q Consensus 84 N~i~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~ 119 (222)
|+|+.++. ..+..+++|+.|++++||+.|.+...+
T Consensus 265 N~l~~~~~-~~~~~l~~L~~L~L~~Np~~CdC~l~~ 299 (440)
T 3zyj_A 265 NNLTLLPH-DLFTPLHHLERIHLHHNPWNCNCDILW 299 (440)
T ss_dssp SCCCCCCT-TTTSSCTTCCEEECCSSCEECSSTTHH
T ss_pred CCCCccCh-hHhccccCCCEEEcCCCCccCCCCchH
Confidence 98888876 667888899999999999988876544
No 52
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=99.63 E-value=8.9e-16 Score=134.91 Aligned_cols=111 Identities=21% Similarity=0.300 Sum_probs=99.7
Q ss_pred CccEEEeecCCCccchh-hhcCCCCCcEEEcccCCCcccccc-ccCCccCCEEecccCcCCcCchh-hhCCCCCceeecc
Q 027557 6 RDCPAVLSRNPIREIGD-SLLNMKAITKLSLSNCQVQIIGSS-LKSCTELKELRLAHNDIKTLPAE-LAFNKKLQNLDLG 82 (222)
Q Consensus 6 ~~~~L~L~~n~l~~lp~-~~~~l~~L~~L~L~~n~i~~lp~~-~~~l~~L~~L~l~~N~i~~lp~~-~~~l~~L~~L~L~ 82 (222)
.+++|+|++|.|+.||+ .|.++++|++|+|++|+|+.+|.. |..+++|++|+|++|+|+.+|.. |+.+++|++|+|+
T Consensus 77 ~L~~L~Ls~N~i~~i~~~~f~~L~~L~~L~Ls~N~l~~l~~~~f~~L~~L~~L~Ls~N~l~~l~~~~~~~L~~L~~L~Ls 156 (635)
T 4g8a_A 77 ELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVA 156 (635)
T ss_dssp TCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECGGGGTTCTTCCEEECTTSCCCCSTTCCCTTCTTCCEEECC
T ss_pred CCCEEECCCCcCCCcChhHhcCCCCCCEEEccCCcCCCCCHHHhcCCCCCCEEECCCCcCCCCChhhhhcCcccCeeccc
Confidence 46899999999999975 789999999999999999999876 89999999999999999999764 8999999999999
Q ss_pred CCccCCCcchHhhcCCCCCCEEEeeCCCCCCchh
Q 027557 83 KNLITRWSELKVLKSLVSLNNLNLQGNPVAEYDK 116 (222)
Q Consensus 83 ~N~i~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~ 116 (222)
+|.|..++....++.+++|++|++++|.+..++.
T Consensus 157 ~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~ 190 (635)
T 4g8a_A 157 HNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYC 190 (635)
T ss_dssp SSCCCCCCCCGGGGGCTTCCEEECCSSCCCEECG
T ss_pred cCccccCCCchhhccchhhhhhcccCcccccccc
Confidence 9999876432478899999999999999988754
No 53
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=99.63 E-value=7.8e-16 Score=130.74 Aligned_cols=126 Identities=21% Similarity=0.237 Sum_probs=107.5
Q ss_pred CccEEEeecCCCccc-hhhhcCCCCCcEEEcccCCCccccc-cccCCccCCEEecccCcCCcC-chhhhCCCCCceeecc
Q 027557 6 RDCPAVLSRNPIREI-GDSLLNMKAITKLSLSNCQVQIIGS-SLKSCTELKELRLAHNDIKTL-PAELAFNKKLQNLDLG 82 (222)
Q Consensus 6 ~~~~L~L~~n~l~~l-p~~~~~l~~L~~L~L~~n~i~~lp~-~~~~l~~L~~L~l~~N~i~~l-p~~~~~l~~L~~L~L~ 82 (222)
.+++|+|++|.+..+ |..+..+++|++|+|++|.|+.+++ .+..+++|++|++++|.++.+ |..+..+++|++|+|+
T Consensus 276 ~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls 355 (455)
T 3v47_A 276 GVKTCDLSKSKIFALLKSVFSHFTDLEQLTLAQNEINKIDDNAFWGLTHLLKLNLSQNFLGSIDSRMFENLDKLEVLDLS 355 (455)
T ss_dssp CCCEEECCSSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECGGGGTTCTTCCEEECC
T ss_pred CceEEEecCccccccchhhcccCCCCCEEECCCCcccccChhHhcCcccCCEEECCCCccCCcChhHhcCcccCCEEECC
Confidence 678999999999976 5678899999999999999999754 588999999999999999976 5568899999999999
Q ss_pred CCccCCCcchHhhcCCCCCCEEEeeCCCCCCchhHHHHHHHhCCccccccCCC
Q 027557 83 KNLITRWSELKVLKSLVSLNNLNLQGNPVAEYDKLAKKVKNLLPSLHIFNARP 135 (222)
Q Consensus 83 ~N~i~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~l~~~~ 135 (222)
+|.|.++++ ..+..+++|++|++++|.+..++.. .+..+++|+.++...
T Consensus 356 ~N~l~~~~~-~~~~~l~~L~~L~L~~N~l~~~~~~---~~~~l~~L~~L~l~~ 404 (455)
T 3v47_A 356 YNHIRALGD-QSFLGLPNLKELALDTNQLKSVPDG---IFDRLTSLQKIWLHT 404 (455)
T ss_dssp SSCCCEECT-TTTTTCTTCCEEECCSSCCSCCCTT---TTTTCTTCCEEECCS
T ss_pred CCcccccCh-hhccccccccEEECCCCccccCCHh---HhccCCcccEEEccC
Confidence 999998855 5789999999999999999988753 335788888776543
No 54
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=99.63 E-value=5.1e-16 Score=126.09 Aligned_cols=130 Identities=15% Similarity=0.096 Sum_probs=103.2
Q ss_pred CccEEEeecCCCc-cchhhh--cCCCCCcEEEcccCCCccccccccCC-----ccCCEEecccCcCCcCc-hhhhCCCCC
Q 027557 6 RDCPAVLSRNPIR-EIGDSL--LNMKAITKLSLSNCQVQIIGSSLKSC-----TELKELRLAHNDIKTLP-AELAFNKKL 76 (222)
Q Consensus 6 ~~~~L~L~~n~l~-~lp~~~--~~l~~L~~L~L~~n~i~~lp~~~~~l-----~~L~~L~l~~N~i~~lp-~~~~~l~~L 76 (222)
.+++|+|++|.|+ .+|..+ ..+++|++|+|++|.|+.+|..+..+ ++|++|++++|+|+.++ ..+..+++|
T Consensus 96 ~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~l~~~~~~~L~~L~L~~N~l~~~~~~~~~~l~~L 175 (312)
T 1wwl_A 96 GLQELTLENLEVTGTAPPPLLEATGPDLNILNLRNVSWATRDAWLAELQQWLKPGLKVLSIAQAHSLNFSCEQVRVFPAL 175 (312)
T ss_dssp CCCEEEEEEEBCBSCCCCCSSSCCSCCCSEEEEESCBCSSSSSHHHHHHTTCCTTCCEEEEESCSCCCCCTTTCCCCSSC
T ss_pred CccEEEccCCcccchhHHHHHHhcCCCccEEEccCCCCcchhHHHHHHHHhhcCCCcEEEeeCCCCccchHHHhccCCCC
Confidence 4688999999998 567665 78999999999999999887667666 89999999999999776 568889999
Q ss_pred ceeeccCCccCCCcc-hHhh--cCCCCCCEEEeeCCCCCCchhHHHHHHHhCCccccccCCC
Q 027557 77 QNLDLGKNLITRWSE-LKVL--KSLVSLNNLNLQGNPVAEYDKLAKKVKNLLPSLHIFNARP 135 (222)
Q Consensus 77 ~~L~L~~N~i~~~~~-~~~~--~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~l~~~~ 135 (222)
++|+|++|++.+... ...+ ..+++|++|++++|.+..++.....+...+++|+.|+...
T Consensus 176 ~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~l~~L~~L~Ls~ 237 (312)
T 1wwl_A 176 STLDLSDNPELGERGLISALCPLKFPTLQVLALRNAGMETPSGVCSALAAARVQLQGLDLSH 237 (312)
T ss_dssp CEEECCSCTTCHHHHHHHHSCTTSCTTCCEEECTTSCCCCHHHHHHHHHHTTCCCSEEECTT
T ss_pred CEEECCCCCcCcchHHHHHHHhccCCCCCEEECCCCcCcchHHHHHHHHhcCCCCCEEECCC
Confidence 999999998765211 1233 7889999999999999877665555666788888887654
No 55
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=99.63 E-value=8.5e-16 Score=135.03 Aligned_cols=125 Identities=22% Similarity=0.271 Sum_probs=100.5
Q ss_pred CccEEEeecCCCccchh-hhcCCCCCcEEEcccCCCccccc-cccCCccCCEEecccCcCCcC-chhhhCCCCCceeecc
Q 027557 6 RDCPAVLSRNPIREIGD-SLLNMKAITKLSLSNCQVQIIGS-SLKSCTELKELRLAHNDIKTL-PAELAFNKKLQNLDLG 82 (222)
Q Consensus 6 ~~~~L~L~~n~l~~lp~-~~~~l~~L~~L~L~~n~i~~lp~-~~~~l~~L~~L~l~~N~i~~l-p~~~~~l~~L~~L~L~ 82 (222)
++++|+|++|.++.+++ .|.++++|++|+|++|.|+.+++ .|..+++|++|++++|.++.+ |..|..+++|++|+++
T Consensus 33 ~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~i~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~ 112 (606)
T 3vq2_A 33 STKNIDLSFNPLKILKSYSFSNFSELQWLDLSRCEIETIEDKAWHGLHHLSNLILTGNPIQSFSPGSFSGLTSLENLVAV 112 (606)
T ss_dssp TCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCCCCTTSSTTCTTCCEEECT
T ss_pred CcCEEECCCCCcCEeChhhccCCccCcEEeCCCCcccccCHHHhhchhhcCEeECCCCcccccChhhcCCcccCCEEEcc
Confidence 56889999999988765 78888999999999999988754 488889999999999998877 6668888899999999
Q ss_pred CCccCCCcchHhhcCCCCCCEEEeeCCCCCC--chhHHHHHHHhCCccccccCCC
Q 027557 83 KNLITRWSELKVLKSLVSLNNLNLQGNPVAE--YDKLAKKVKNLLPSLHIFNARP 135 (222)
Q Consensus 83 ~N~i~~~~~~~~~~~l~~L~~L~l~~N~l~~--~~~~~~~~~~~l~~L~~l~~~~ 135 (222)
+|.|..+++ ..++.+++|++|++++|.+.. +|. .+..+++|+.|+...
T Consensus 113 ~n~l~~~~~-~~~~~l~~L~~L~L~~n~l~~~~lp~----~~~~l~~L~~L~Ls~ 162 (606)
T 3vq2_A 113 ETKLASLES-FPIGQLITLKKLNVAHNFIHSCKLPA----YFSNLTNLVHVDLSY 162 (606)
T ss_dssp TSCCCCSSS-SCCTTCTTCCEEECCSSCCCCCCCCG----GGGTCTTCCEEECCS
T ss_pred CCccccccc-cccCCCCCCCEEeCCCCcccceechH----hHhhcCCCCEEEccC
Confidence 998888775 468888888889988888875 344 234778888776654
No 56
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=99.63 E-value=5.6e-16 Score=121.04 Aligned_cols=123 Identities=13% Similarity=0.128 Sum_probs=103.5
Q ss_pred CccEEEeecCCCccchh-hhcCCCCCcEEEcccCC-Ccccccc-ccCCccCCEEeccc-CcCCcCch-hhhCCCCCceee
Q 027557 6 RDCPAVLSRNPIREIGD-SLLNMKAITKLSLSNCQ-VQIIGSS-LKSCTELKELRLAH-NDIKTLPA-ELAFNKKLQNLD 80 (222)
Q Consensus 6 ~~~~L~L~~n~l~~lp~-~~~~l~~L~~L~L~~n~-i~~lp~~-~~~l~~L~~L~l~~-N~i~~lp~-~~~~l~~L~~L~ 80 (222)
.+++|+|++|.|+.+|+ .|..+++|++|++++|. ++.+++. |..+++|++|++++ |.++.+|. .|..+++|++|+
T Consensus 32 ~l~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~~l~~i~~~~f~~l~~L~~L~l~~~n~l~~i~~~~f~~l~~L~~L~ 111 (239)
T 2xwt_C 32 STQTLKLIETHLRTIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRNLTYIDPDALKELPLLKFLG 111 (239)
T ss_dssp TCCEEEEESCCCSEECTTTTTTCTTCCEEEEECCSSCCEECTTTEESCTTCCEEEEEEETTCCEECTTSEECCTTCCEEE
T ss_pred cccEEEEeCCcceEECHHHccCCCCCcEEeCCCCCCcceeCHhHcCCCcCCcEEECCCCCCeeEcCHHHhCCCCCCCEEe
Confidence 57899999999999876 78899999999999997 9998874 88999999999998 99998864 488899999999
Q ss_pred ccCCccCCCcchHhhcCCCCCC---EEEeeCC-CCCCchhHHHHHHHhCCccc-cccCC
Q 027557 81 LGKNLITRWSELKVLKSLVSLN---NLNLQGN-PVAEYDKLAKKVKNLLPSLH-IFNAR 134 (222)
Q Consensus 81 L~~N~i~~~~~~~~~~~l~~L~---~L~l~~N-~l~~~~~~~~~~~~~l~~L~-~l~~~ 134 (222)
+++|.|..+|. +..+++|+ .|++++| .+..++.. .+..+++|+ .++..
T Consensus 112 l~~n~l~~lp~---~~~l~~L~~L~~L~l~~N~~l~~i~~~---~~~~l~~L~~~L~l~ 164 (239)
T 2xwt_C 112 IFNTGLKMFPD---LTKVYSTDIFFILEITDNPYMTSIPVN---AFQGLCNETLTLKLY 164 (239)
T ss_dssp EEEECCCSCCC---CTTCCBCCSEEEEEEESCTTCCEECTT---TTTTTBSSEEEEECC
T ss_pred CCCCCCccccc---cccccccccccEEECCCCcchhhcCcc---cccchhcceeEEEcC
Confidence 99999999875 67777777 9999999 88887653 234678888 77654
No 57
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=99.63 E-value=4.7e-16 Score=139.76 Aligned_cols=119 Identities=25% Similarity=0.192 Sum_probs=95.9
Q ss_pred EeecCCCccchhhhcCCCCCcEEEcccCCCccccccccCCccCCEEecccCcCCcCchhhhCCCCCceeeccCCccCCCc
Q 027557 11 VLSRNPIREIGDSLLNMKAITKLSLSNCQVQIIGSSLKSCTELKELRLAHNDIKTLPAELAFNKKLQNLDLGKNLITRWS 90 (222)
Q Consensus 11 ~L~~n~l~~lp~~~~~l~~L~~L~L~~n~i~~lp~~~~~l~~L~~L~l~~N~i~~lp~~~~~l~~L~~L~L~~N~i~~~~ 90 (222)
+++.|.+...++.+..+..|+.|+|++|.|..+|..+..+++|++|+|++|.|+.+|..|..+++|++|+|++|.|+.+|
T Consensus 207 ~~~~n~~~~~~~~~~~l~~L~~L~Ls~n~l~~l~~~~~~l~~L~~L~Ls~N~l~~lp~~~~~l~~L~~L~Ls~N~l~~lp 286 (727)
T 4b8c_D 207 DDIENRMVMPKDSKYDDQLWHALDLSNLQIFNISANIFKYDFLTRLYLNGNSLTELPAEIKNLSNLRVLDLSHNRLTSLP 286 (727)
T ss_dssp ---------------CCCCCCEEECTTSCCSCCCGGGGGCCSCSCCBCTTSCCSCCCGGGGGGTTCCEEECTTSCCSSCC
T ss_pred cccccceecChhhhccCCCCcEEECCCCCCCCCChhhcCCCCCCEEEeeCCcCcccChhhhCCCCCCEEeCcCCcCCccC
Confidence 34444444445678899999999999999999998888999999999999999999999999999999999999999998
Q ss_pred chHhhcCCCCCCEEEeeCCCCCCchhHHHHHHHhCCccccccCCC
Q 027557 91 ELKVLKSLVSLNNLNLQGNPVAEYDKLAKKVKNLLPSLHIFNARP 135 (222)
Q Consensus 91 ~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~l~~~~ 135 (222)
. .++.+++|++|+|++|.|..+|.. +..+++|+.|+...
T Consensus 287 ~--~~~~l~~L~~L~L~~N~l~~lp~~----~~~l~~L~~L~L~~ 325 (727)
T 4b8c_D 287 A--ELGSCFQLKYFYFFDNMVTTLPWE----FGNLCNLQFLGVEG 325 (727)
T ss_dssp S--SGGGGTTCSEEECCSSCCCCCCSS----TTSCTTCCCEECTT
T ss_pred h--hhcCCCCCCEEECCCCCCCccChh----hhcCCCccEEeCCC
Confidence 7 899999999999999999988863 35788998886654
No 58
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=99.62 E-value=6.6e-16 Score=127.36 Aligned_cols=125 Identities=20% Similarity=0.165 Sum_probs=94.8
Q ss_pred CccEEEeecCCCccchh-hhcCCCCCcEEEcccCCCcccccc-ccCCccCCEEecccCcCCcCchh-hhCCCCCceeecc
Q 027557 6 RDCPAVLSRNPIREIGD-SLLNMKAITKLSLSNCQVQIIGSS-LKSCTELKELRLAHNDIKTLPAE-LAFNKKLQNLDLG 82 (222)
Q Consensus 6 ~~~~L~L~~n~l~~lp~-~~~~l~~L~~L~L~~n~i~~lp~~-~~~l~~L~~L~l~~N~i~~lp~~-~~~l~~L~~L~L~ 82 (222)
.+++|+|++|.|+.+|. .|..+++|++|+|++|.|+.+++. +..+++|++|++++|+++.+|.. +..+++|++|+++
T Consensus 53 ~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~ 132 (353)
T 2z80_A 53 AVKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGINTIEEDSFSSLGSLEHLDLSYNYLSNLSSSWFKPLSSLTFLNLL 132 (353)
T ss_dssp TCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSSCCHHHHTTCTTCSEEECT
T ss_pred cCcEEECCCCcCcccCHHHhccCCCCCEEECCCCccCccCHhhcCCCCCCCEEECCCCcCCcCCHhHhCCCccCCEEECC
Confidence 56788899998888875 788888899999999988887544 88888889999988888888766 7888888888888
Q ss_pred CCccCCCcchHhhcCCCCCCEEEeeCC-CCCCchhHHHHHHHhCCccccccC
Q 027557 83 KNLITRWSELKVLKSLVSLNNLNLQGN-PVAEYDKLAKKVKNLLPSLHIFNA 133 (222)
Q Consensus 83 ~N~i~~~~~~~~~~~l~~L~~L~l~~N-~l~~~~~~~~~~~~~l~~L~~l~~ 133 (222)
+|.|..++....+..+++|++|++++| .+..++.. .+..+++|+.|+.
T Consensus 133 ~n~l~~l~~~~~~~~l~~L~~L~l~~n~~~~~~~~~---~~~~l~~L~~L~l 181 (353)
T 2z80_A 133 GNPYKTLGETSLFSHLTKLQILRVGNMDTFTKIQRK---DFAGLTFLEELEI 181 (353)
T ss_dssp TCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTT---TTTTCCEEEEEEE
T ss_pred CCCCcccCchhhhccCCCCcEEECCCCccccccCHH---HccCCCCCCEEEC
Confidence 888888764235777888888888887 35555321 2235566665543
No 59
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=99.62 E-value=2.7e-15 Score=119.55 Aligned_cols=111 Identities=21% Similarity=0.310 Sum_probs=96.6
Q ss_pred CccEEEeecCCCccchh-hhcCCCCCcEEEcccCCCcccccc-ccCCccCCEEecccCcCCcCch-hhhCCCCCceeecc
Q 027557 6 RDCPAVLSRNPIREIGD-SLLNMKAITKLSLSNCQVQIIGSS-LKSCTELKELRLAHNDIKTLPA-ELAFNKKLQNLDLG 82 (222)
Q Consensus 6 ~~~~L~L~~n~l~~lp~-~~~~l~~L~~L~L~~n~i~~lp~~-~~~l~~L~~L~l~~N~i~~lp~-~~~~l~~L~~L~L~ 82 (222)
.+++|+|++|.|+.+++ .|..+++|++|+|++|.|+.++.. +..+++|++|++++|.++.++. .+..+++|++|+++
T Consensus 53 ~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~ 132 (276)
T 2z62_A 53 ELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVA 132 (276)
T ss_dssp TCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTSCCCCSTTCCCTTCTTCCEEECC
T ss_pred CCcEEECCCCcCCccCHHHccCCcCCCEEECCCCccCccChhhhcCCccccEEECCCCCccccCchhcccCCCCCEEECc
Confidence 46899999999998865 788999999999999999997754 8999999999999999998865 58899999999999
Q ss_pred CCccCCCcchHhhcCCCCCCEEEeeCCCCCCchh
Q 027557 83 KNLITRWSELKVLKSLVSLNNLNLQGNPVAEYDK 116 (222)
Q Consensus 83 ~N~i~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~ 116 (222)
+|.|..++-...++.+++|++|++++|.+..++.
T Consensus 133 ~n~l~~~~l~~~~~~l~~L~~L~Ls~N~l~~~~~ 166 (276)
T 2z62_A 133 HNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYC 166 (276)
T ss_dssp SSCCCCCCCCGGGGGCTTCCEEECCSSCCCEECG
T ss_pred CCccceecCchhhccCCCCCEEECCCCCCCcCCH
Confidence 9999884311379999999999999999988754
No 60
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=99.62 E-value=7.3e-16 Score=125.30 Aligned_cols=125 Identities=20% Similarity=0.235 Sum_probs=100.2
Q ss_pred CCccEEEeecCCCc---cchhhhcCCCCCcEEEccc-CCCcc-ccccccCCccCCEEecccCcCC-cCchhhhCCCCCce
Q 027557 5 IRDCPAVLSRNPIR---EIGDSLLNMKAITKLSLSN-CQVQI-IGSSLKSCTELKELRLAHNDIK-TLPAELAFNKKLQN 78 (222)
Q Consensus 5 ~~~~~L~L~~n~l~---~lp~~~~~l~~L~~L~L~~-n~i~~-lp~~~~~l~~L~~L~l~~N~i~-~lp~~~~~l~~L~~ 78 (222)
-+++.|+|++|.++ .+|+.+..+++|++|+|++ |.+.. +|..+..+++|++|++++|.++ .+|..+..+++|++
T Consensus 50 ~~l~~L~L~~~~l~~~~~~~~~l~~l~~L~~L~L~~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~ 129 (313)
T 1ogq_A 50 YRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVT 129 (313)
T ss_dssp CCEEEEEEECCCCSSCEECCGGGGGCTTCSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEEECCGGGGGCTTCCE
T ss_pred ceEEEEECCCCCccCCcccChhHhCCCCCCeeeCCCCCcccccCChhHhcCCCCCEEECcCCeeCCcCCHHHhCCCCCCE
Confidence 46788999999998 4788889999999999994 88875 7777889999999999999998 77888889999999
Q ss_pred eeccCCccCC-CcchHhhcCCCCCCEEEeeCCCCC-CchhHHHHHHHhCC-ccccccCCC
Q 027557 79 LDLGKNLITR-WSELKVLKSLVSLNNLNLQGNPVA-EYDKLAKKVKNLLP-SLHIFNARP 135 (222)
Q Consensus 79 L~L~~N~i~~-~~~~~~~~~l~~L~~L~l~~N~l~-~~~~~~~~~~~~l~-~L~~l~~~~ 135 (222)
|+|++|.|.+ +|. .+..+++|++|++++|.+. .++.. +..++ .|+.|+...
T Consensus 130 L~Ls~N~l~~~~p~--~~~~l~~L~~L~L~~N~l~~~~p~~----l~~l~~~L~~L~L~~ 183 (313)
T 1ogq_A 130 LDFSYNALSGTLPP--SISSLPNLVGITFDGNRISGAIPDS----YGSFSKLFTSMTISR 183 (313)
T ss_dssp EECCSSEEESCCCG--GGGGCTTCCEEECCSSCCEEECCGG----GGCCCTTCCEEECCS
T ss_pred EeCCCCccCCcCCh--HHhcCCCCCeEECcCCcccCcCCHH----HhhhhhcCcEEECcC
Confidence 9999999884 444 7888999999999999887 44432 23555 677665543
No 61
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=99.62 E-value=4.4e-15 Score=121.89 Aligned_cols=119 Identities=26% Similarity=0.291 Sum_probs=75.7
Q ss_pred ccEEEeecCCCccchhhhcCCCCCcEEEcccCCCccccccccCCccCCEEecccCcCCcCchhhhCCCCCceeeccCCcc
Q 027557 7 DCPAVLSRNPIREIGDSLLNMKAITKLSLSNCQVQIIGSSLKSCTELKELRLAHNDIKTLPAELAFNKKLQNLDLGKNLI 86 (222)
Q Consensus 7 ~~~L~L~~n~l~~lp~~~~~l~~L~~L~L~~n~i~~lp~~~~~l~~L~~L~l~~N~i~~lp~~~~~l~~L~~L~L~~N~i 86 (222)
+++|++++|.+..++. +..+++|++|++++|.++.++. +..+++|++|++++|.++.++ .+..+++|+.|++++|.|
T Consensus 201 L~~L~l~~n~l~~~~~-~~~~~~L~~L~l~~n~l~~~~~-~~~l~~L~~L~l~~n~l~~~~-~~~~l~~L~~L~l~~n~l 277 (347)
T 4fmz_A 201 LHYFTAYVNQITDITP-VANMTRLNSLKIGNNKITDLSP-LANLSQLTWLEIGTNQISDIN-AVKDLTKLKMLNVGSNQI 277 (347)
T ss_dssp CCEEECCSSCCCCCGG-GGGCTTCCEEECCSSCCCCCGG-GTTCTTCCEEECCSSCCCCCG-GGTTCTTCCEEECCSSCC
T ss_pred cceeecccCCCCCCch-hhcCCcCCEEEccCCccCCCcc-hhcCCCCCEEECCCCccCCCh-hHhcCCCcCEEEccCCcc
Confidence 4566777777666644 5666677777777777766664 666667777777777666663 566666777777777766
Q ss_pred CCCcchHhhcCCCCCCEEEeeCCCCCCchhHHHHHHHhCCccccccCC
Q 027557 87 TRWSELKVLKSLVSLNNLNLQGNPVAEYDKLAKKVKNLLPSLHIFNAR 134 (222)
Q Consensus 87 ~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~l~~~ 134 (222)
.+++ .+..+++|+.|++++|++...+.. .+..+++|+.++..
T Consensus 278 ~~~~---~~~~l~~L~~L~L~~n~l~~~~~~---~l~~l~~L~~L~L~ 319 (347)
T 4fmz_A 278 SDIS---VLNNLSQLNSLFLNNNQLGNEDME---VIGGLTNLTTLFLS 319 (347)
T ss_dssp CCCG---GGGGCTTCSEEECCSSCCCGGGHH---HHHTCTTCSEEECC
T ss_pred CCCh---hhcCCCCCCEEECcCCcCCCcChh---HhhccccCCEEEcc
Confidence 6653 366666677777777666654432 33456666665443
No 62
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=99.62 E-value=2.6e-15 Score=125.31 Aligned_cols=106 Identities=17% Similarity=0.291 Sum_probs=50.1
Q ss_pred cEEEeecCCCccchhh-hcCCCCCcEEEcccCCCccccc-cccCCccCCEEecccCcCCcCch-hhhCCCCCceeeccCC
Q 027557 8 CPAVLSRNPIREIGDS-LLNMKAITKLSLSNCQVQIIGS-SLKSCTELKELRLAHNDIKTLPA-ELAFNKKLQNLDLGKN 84 (222)
Q Consensus 8 ~~L~L~~n~l~~lp~~-~~~l~~L~~L~L~~n~i~~lp~-~~~~l~~L~~L~l~~N~i~~lp~-~~~~l~~L~~L~L~~N 84 (222)
++|++++|.++.+|.. +..+++|++|+|++|.|+.+++ .+..+++|++|++++|.++.+|. .+..+++|++|++++|
T Consensus 48 ~~l~l~~~~l~~l~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n 127 (390)
T 3o6n_A 48 KIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERN 127 (390)
T ss_dssp SEEEEESCEESEECTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred eEEEecCCchhhCChhHhcccccCcEEECCCCcccccChhhccCCCCcCEEECCCCCCCcCCHHHhcCCCCCCEEECCCC
Confidence 4455555555554432 3444555555555555544443 24445555555555555544422 2444455555555555
Q ss_pred ccCCCcchHhhcCCCCCCEEEeeCCCCCCc
Q 027557 85 LITRWSELKVLKSLVSLNNLNLQGNPVAEY 114 (222)
Q Consensus 85 ~i~~~~~~~~~~~l~~L~~L~l~~N~l~~~ 114 (222)
.|..++. ..+..+++|++|++++|.+...
T Consensus 128 ~l~~l~~-~~~~~l~~L~~L~L~~n~l~~~ 156 (390)
T 3o6n_A 128 DLSSLPR-GIFHNTPKLTTLSMSNNNLERI 156 (390)
T ss_dssp CCCCCCT-TTTTTCTTCCEEECCSSCCCBC
T ss_pred ccCcCCH-HHhcCCCCCcEEECCCCccCcc
Confidence 5544443 2234444555555555544443
No 63
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=99.61 E-value=1.6e-15 Score=128.86 Aligned_cols=110 Identities=24% Similarity=0.286 Sum_probs=83.4
Q ss_pred CccEEEeecCCCccch-hhhcCCCCCcEEEcccCCCccccc-cccCCccCCEEecccCcCCcC-chhhhCCCCCceeecc
Q 027557 6 RDCPAVLSRNPIREIG-DSLLNMKAITKLSLSNCQVQIIGS-SLKSCTELKELRLAHNDIKTL-PAELAFNKKLQNLDLG 82 (222)
Q Consensus 6 ~~~~L~L~~n~l~~lp-~~~~~l~~L~~L~L~~n~i~~lp~-~~~~l~~L~~L~l~~N~i~~l-p~~~~~l~~L~~L~L~ 82 (222)
.+++|+|++|.|+.++ ..|..+++|++|+|++|.|+.+++ .+..+++|++|++++|+++.+ |..+..+++|++|+|+
T Consensus 300 ~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~ 379 (455)
T 3v47_A 300 DLEQLTLAQNEINKIDDNAFWGLTHLLKLNLSQNFLGSIDSRMFENLDKLEVLDLSYNHIRALGDQSFLGLPNLKELALD 379 (455)
T ss_dssp TCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECGGGGTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECC
T ss_pred CCCEEECCCCcccccChhHhcCcccCCEEECCCCccCCcChhHhcCcccCCEEECCCCcccccChhhccccccccEEECC
Confidence 4577888888888663 467778888888888888877643 477788888888888888765 5567778888888888
Q ss_pred CCccCCCcchHhhcCCCCCCEEEeeCCCCCCchh
Q 027557 83 KNLITRWSELKVLKSLVSLNNLNLQGNPVAEYDK 116 (222)
Q Consensus 83 ~N~i~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~ 116 (222)
+|+|++++. ..+..+++|+.|++++|++.+.++
T Consensus 380 ~N~l~~~~~-~~~~~l~~L~~L~l~~N~l~~~~~ 412 (455)
T 3v47_A 380 TNQLKSVPD-GIFDRLTSLQKIWLHTNPWDCSCP 412 (455)
T ss_dssp SSCCSCCCT-TTTTTCTTCCEEECCSSCBCCCTT
T ss_pred CCccccCCH-hHhccCCcccEEEccCCCcccCCC
Confidence 888887775 556778888888888888877654
No 64
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=99.61 E-value=8.5e-16 Score=111.42 Aligned_cols=102 Identities=25% Similarity=0.270 Sum_probs=91.6
Q ss_pred CccEEEeecCCCccchhhhcCCCCCcEEEcccCCCcc-ccccccCCccCCEEecccCcCCcCc--hhhhCCCCCceeecc
Q 027557 6 RDCPAVLSRNPIREIGDSLLNMKAITKLSLSNCQVQI-IGSSLKSCTELKELRLAHNDIKTLP--AELAFNKKLQNLDLG 82 (222)
Q Consensus 6 ~~~~L~L~~n~l~~lp~~~~~l~~L~~L~L~~n~i~~-lp~~~~~l~~L~~L~l~~N~i~~lp--~~~~~l~~L~~L~L~ 82 (222)
.+++|+|++|.|+.+ ..+..+++|++|++++|.|+. +|..+..+++|++|++++|.++.+| ..+..+++|++|+++
T Consensus 43 ~L~~L~l~~n~l~~~-~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~ls~N~i~~~~~~~~~~~l~~L~~L~l~ 121 (149)
T 2je0_A 43 ELEFLSTINVGLTSI-ANLPKLNKLKKLELSDNRVSGGLEVLAEKCPNLTHLNLSGNKIKDLSTIEPLKKLENLKSLDLF 121 (149)
T ss_dssp TCCEEECTTSCCCCC-TTCCCCTTCCEEECCSSCCCSCTHHHHHHCTTCCEEECTTSCCCSHHHHGGGGGCTTCCEEECT
T ss_pred CCcEEECcCCCCCCc-hhhhcCCCCCEEECCCCcccchHHHHhhhCCCCCEEECCCCcCCChHHHHHHhhCCCCCEEeCc
Confidence 468999999999998 788999999999999999999 7766778999999999999999875 679999999999999
Q ss_pred CCccCCCcch--HhhcCCCCCCEEEeeC
Q 027557 83 KNLITRWSEL--KVLKSLVSLNNLNLQG 108 (222)
Q Consensus 83 ~N~i~~~~~~--~~~~~l~~L~~L~l~~ 108 (222)
+|.|++++.+ ..+..+++|+.|++++
T Consensus 122 ~N~l~~~~~~~~~~~~~l~~L~~L~l~d 149 (149)
T 2je0_A 122 NCEVTNLNDYRENVFKLLPQLTYLDGYD 149 (149)
T ss_dssp TCGGGGSTTHHHHHHHHCTTCCEETTBC
T ss_pred CCcccchHHHHHHHHHHCCCcccccCCC
Confidence 9999998753 4688999999998763
No 65
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=99.61 E-value=1.4e-15 Score=122.83 Aligned_cols=126 Identities=19% Similarity=0.182 Sum_probs=98.8
Q ss_pred CccEEEeecCCCccc-hhhhcCCCCCcEEEcccCCCcc--ccccccCCccCCEEecccCcCCcC-chhhhCCCCCceeec
Q 027557 6 RDCPAVLSRNPIREI-GDSLLNMKAITKLSLSNCQVQI--IGSSLKSCTELKELRLAHNDIKTL-PAELAFNKKLQNLDL 81 (222)
Q Consensus 6 ~~~~L~L~~n~l~~l-p~~~~~l~~L~~L~L~~n~i~~--lp~~~~~l~~L~~L~l~~N~i~~l-p~~~~~l~~L~~L~L 81 (222)
.+++|++++|.+..+ +..+..+++|++|++++|.++. +|..+..+++|++|++++|.++.+ |..+..+++|+.|+|
T Consensus 127 ~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L 206 (306)
T 2z66_A 127 NLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNM 206 (306)
T ss_dssp TCCEEECTTSCCEECSTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEEC
T ss_pred CCCEEECCCCcCCccchhhcccCcCCCEEECCCCccccccchhHHhhCcCCCEEECCCCCcCCcCHHHhcCCCCCCEEEC
Confidence 468899999998865 4567888999999999999886 676788899999999999999876 556888899999999
Q ss_pred cCCccCCCcchHhhcCCCCCCEEEeeCCCCCCchhHHHHHHHhCC-ccccccCCC
Q 027557 82 GKNLITRWSELKVLKSLVSLNNLNLQGNPVAEYDKLAKKVKNLLP-SLHIFNARP 135 (222)
Q Consensus 82 ~~N~i~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~-~L~~l~~~~ 135 (222)
++|.|.+++. ..+..+++|+.|++++|++...... .+..++ +|+.++...
T Consensus 207 ~~N~l~~~~~-~~~~~l~~L~~L~L~~N~l~~~~~~---~~~~~~~~L~~L~L~~ 257 (306)
T 2z66_A 207 SHNNFFSLDT-FPYKCLNSLQVLDYSLNHIMTSKKQ---ELQHFPSSLAFLNLTQ 257 (306)
T ss_dssp TTSCCSBCCS-GGGTTCTTCCEEECTTSCCCBCSSS---SCCCCCTTCCEEECTT
T ss_pred CCCccCccCh-hhccCcccCCEeECCCCCCcccCHH---HHHhhhccCCEEEccC
Confidence 9999988876 5678889999999999988775432 123443 677665543
No 66
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.61 E-value=2.7e-15 Score=131.98 Aligned_cols=108 Identities=24% Similarity=0.328 Sum_probs=65.9
Q ss_pred ccEEEeecCCCccchh-hhcCCCCCcEEEcccCCCcccccc-ccCCccCCEEecccCcCCcCchh-hhCCCCCceeeccC
Q 027557 7 DCPAVLSRNPIREIGD-SLLNMKAITKLSLSNCQVQIIGSS-LKSCTELKELRLAHNDIKTLPAE-LAFNKKLQNLDLGK 83 (222)
Q Consensus 7 ~~~L~L~~n~l~~lp~-~~~~l~~L~~L~L~~n~i~~lp~~-~~~l~~L~~L~l~~N~i~~lp~~-~~~l~~L~~L~L~~ 83 (222)
+++|+|++|.|+.+++ .|..+++|++|+|++|.|+.+|+. |..+++|++|+|++|.|+.+|.. |..+++|++|+|++
T Consensus 77 L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~Ls~ 156 (597)
T 3oja_B 77 VELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERNDLSSLPRGIFHNTPKLTTLSMSN 156 (597)
T ss_dssp CSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCS
T ss_pred CcEEECCCCCCCCCChHHhcCCCCCCEEECCCCcCCCCCHHHHcCCCCCCEEEeeCCCCCCCCHHHhccCCCCCEEEeeC
Confidence 4566666666665543 556666666666666666665544 56666666666666666666544 45666666666666
Q ss_pred CccCCCcchHhhcCCCCCCEEEeeCCCCCCch
Q 027557 84 NLITRWSELKVLKSLVSLNNLNLQGNPVAEYD 115 (222)
Q Consensus 84 N~i~~~~~~~~~~~l~~L~~L~l~~N~l~~~~ 115 (222)
|.|.++++ ..++.+++|++|++++|.+...+
T Consensus 157 N~l~~~~~-~~~~~l~~L~~L~L~~N~l~~~~ 187 (597)
T 3oja_B 157 NNLERIED-DTFQATTSLQNLQLSSNRLTHVD 187 (597)
T ss_dssp SCCCBCCT-TTTTTCTTCCEEECTTSCCSBCC
T ss_pred CcCCCCCh-hhhhcCCcCcEEECcCCCCCCcC
Confidence 66666554 44666666666666666665543
No 67
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=99.61 E-value=5.8e-16 Score=120.96 Aligned_cols=123 Identities=19% Similarity=0.219 Sum_probs=104.7
Q ss_pred CccEEEeecCC-Cccchh-hhcCCCCCcEEEccc-CCCcccccc-ccCCccCCEEecccCcCCcCchhhhCCCCCc---e
Q 027557 6 RDCPAVLSRNP-IREIGD-SLLNMKAITKLSLSN-CQVQIIGSS-LKSCTELKELRLAHNDIKTLPAELAFNKKLQ---N 78 (222)
Q Consensus 6 ~~~~L~L~~n~-l~~lp~-~~~~l~~L~~L~L~~-n~i~~lp~~-~~~l~~L~~L~l~~N~i~~lp~~~~~l~~L~---~ 78 (222)
.+++|+|++|. ++.+++ .|..+++|++|++++ |.|+.+|.. |..+++|++|++++|+++.+|. +..+++|+ .
T Consensus 56 ~L~~L~l~~n~~l~~i~~~~f~~l~~L~~L~l~~~n~l~~i~~~~f~~l~~L~~L~l~~n~l~~lp~-~~~l~~L~~L~~ 134 (239)
T 2xwt_C 56 NISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRNLTYIDPDALKELPLLKFLGIFNTGLKMFPD-LTKVYSTDIFFI 134 (239)
T ss_dssp TCCEEEEECCSSCCEECTTTEESCTTCCEEEEEEETTCCEECTTSEECCTTCCEEEEEEECCCSCCC-CTTCCBCCSEEE
T ss_pred CCcEEeCCCCCCcceeCHhHcCCCcCCcEEECCCCCCeeEcCHHHhCCCCCCCEEeCCCCCCccccc-cccccccccccE
Confidence 46899999997 999875 788999999999998 999998865 8899999999999999999986 88888888 9
Q ss_pred eeccCC-ccCCCcchHhhcCCCCCC-EEEeeCCCCCCchhHHHHHHHhCCccccccCC
Q 027557 79 LDLGKN-LITRWSELKVLKSLVSLN-NLNLQGNPVAEYDKLAKKVKNLLPSLHIFNAR 134 (222)
Q Consensus 79 L~L~~N-~i~~~~~~~~~~~l~~L~-~L~l~~N~l~~~~~~~~~~~~~l~~L~~l~~~ 134 (222)
|++++| .|..++. ..|..+++|+ .|++++|.+..++... . ..++|+.++..
T Consensus 135 L~l~~N~~l~~i~~-~~~~~l~~L~~~L~l~~n~l~~i~~~~---~-~~~~L~~L~L~ 187 (239)
T 2xwt_C 135 LEITDNPYMTSIPV-NAFQGLCNETLTLKLYNNGFTSVQGYA---F-NGTKLDAVYLN 187 (239)
T ss_dssp EEEESCTTCCEECT-TTTTTTBSSEEEEECCSCCCCEECTTT---T-TTCEEEEEECT
T ss_pred EECCCCcchhhcCc-ccccchhcceeEEEcCCCCCcccCHhh---c-CCCCCCEEEcC
Confidence 999999 9999886 5688999999 9999999999877532 1 22677777654
No 68
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=99.60 E-value=1.4e-15 Score=126.89 Aligned_cols=122 Identities=25% Similarity=0.345 Sum_probs=108.4
Q ss_pred CccEEEeecCCCccchh-hhcCCCCCcEEEcccCCCcccccc-ccCCccCCEEecccCcCCcCchh-hhCCCCCceeecc
Q 027557 6 RDCPAVLSRNPIREIGD-SLLNMKAITKLSLSNCQVQIIGSS-LKSCTELKELRLAHNDIKTLPAE-LAFNKKLQNLDLG 82 (222)
Q Consensus 6 ~~~~L~L~~n~l~~lp~-~~~~l~~L~~L~L~~n~i~~lp~~-~~~l~~L~~L~l~~N~i~~lp~~-~~~l~~L~~L~L~ 82 (222)
.+++|+|++|.|+.+++ .|..+++|++|+|++|.|+.+++. +..+++|++|++++|.++.+|.. +..+++|++|+++
T Consensus 70 ~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~L~ 149 (390)
T 3o6n_A 70 QVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERNDLSSLPRGIFHNTPKLTTLSMS 149 (390)
T ss_dssp CCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECC
T ss_pred cCcEEECCCCcccccChhhccCCCCcCEEECCCCCCCcCCHHHhcCCCCCCEEECCCCccCcCCHHHhcCCCCCcEEECC
Confidence 46899999999998875 889999999999999999998765 89999999999999999999876 6899999999999
Q ss_pred CCccCCCcchHhhcCCCCCCEEEeeCCCCCCchhHHHHHHHhCCccccccCC
Q 027557 83 KNLITRWSELKVLKSLVSLNNLNLQGNPVAEYDKLAKKVKNLLPSLHIFNAR 134 (222)
Q Consensus 83 ~N~i~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~l~~~ 134 (222)
+|.|..+++ ..+..+++|+.|++++|.+...+. ..+++|+.++..
T Consensus 150 ~n~l~~~~~-~~~~~l~~L~~L~l~~n~l~~~~~------~~l~~L~~L~l~ 194 (390)
T 3o6n_A 150 NNNLERIED-DTFQATTSLQNLQLSSNRLTHVDL------SLIPSLFHANVS 194 (390)
T ss_dssp SSCCCBCCT-TTTSSCTTCCEEECCSSCCSBCCG------GGCTTCSEEECC
T ss_pred CCccCccCh-hhccCCCCCCEEECCCCcCCcccc------ccccccceeecc
Confidence 999999876 579999999999999999988752 367888776554
No 69
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=99.60 E-value=1.2e-15 Score=124.10 Aligned_cols=123 Identities=21% Similarity=0.215 Sum_probs=94.2
Q ss_pred CccEEEeecCCCccchh-hhcCCCCCcEEEcccCCCcccccc-c-cCCccCCEEecccCcCCcCchhhhCCCCCceeecc
Q 027557 6 RDCPAVLSRNPIREIGD-SLLNMKAITKLSLSNCQVQIIGSS-L-KSCTELKELRLAHNDIKTLPAELAFNKKLQNLDLG 82 (222)
Q Consensus 6 ~~~~L~L~~n~l~~lp~-~~~~l~~L~~L~L~~n~i~~lp~~-~-~~l~~L~~L~l~~N~i~~lp~~~~~l~~L~~L~L~ 82 (222)
.+++|+|++|.++.+++ .+..+++|++|+|++|.|+.++.. + ..+++|++|++++|.|+.+| ....+++|+.|+|+
T Consensus 121 ~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~~~~-~~~~l~~L~~L~Ls 199 (317)
T 3o53_A 121 GKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIYDVK-GQVVFAKLKTLDLS 199 (317)
T ss_dssp SCEEEECCSSCCCSGGGBCTGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTSCCCEEE-CCCCCTTCCEEECC
T ss_pred CCCEEECCCCCCCCccchhhhccCCCCEEECCCCCCCcccHHHHhhccCcCCEEECCCCcCcccc-cccccccCCEEECC
Confidence 35788888888888754 677788888888888888885433 4 46788888888888888775 34457888888888
Q ss_pred CCccCCCcchHhhcCCCCCCEEEeeCCCCCCchhHHHHHHHhCCccccccCCC
Q 027557 83 KNLITRWSELKVLKSLVSLNNLNLQGNPVAEYDKLAKKVKNLLPSLHIFNARP 135 (222)
Q Consensus 83 ~N~i~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~l~~~~ 135 (222)
+|.|+++++ .+..+++|+.|++++|.+..++.. +..+++|+.++...
T Consensus 200 ~N~l~~l~~--~~~~l~~L~~L~L~~N~l~~l~~~----~~~l~~L~~L~l~~ 246 (317)
T 3o53_A 200 SNKLAFMGP--EFQSAAGVTWISLRNNKLVLIEKA----LRFSQNLEHFDLRG 246 (317)
T ss_dssp SSCCCEECG--GGGGGTTCSEEECTTSCCCEECTT----CCCCTTCCEEECTT
T ss_pred CCcCCcchh--hhcccCcccEEECcCCcccchhhH----hhcCCCCCEEEccC
Confidence 888888876 578888888888888888877652 24667777765543
No 70
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=99.60 E-value=3.6e-15 Score=129.52 Aligned_cols=124 Identities=20% Similarity=0.245 Sum_probs=98.9
Q ss_pred CccEEEeecCCCccchh---hhcCCCCCcEEEcccCCCccccccccCCccCCEEecccCcCCcCchhh------------
Q 027557 6 RDCPAVLSRNPIREIGD---SLLNMKAITKLSLSNCQVQIIGSSLKSCTELKELRLAHNDIKTLPAEL------------ 70 (222)
Q Consensus 6 ~~~~L~L~~n~l~~lp~---~~~~l~~L~~L~L~~n~i~~lp~~~~~l~~L~~L~l~~N~i~~lp~~~------------ 70 (222)
.+++|+|++|.|+.++. .+..+++|++|++++|.|+.+|..+..+++|++|++++|+++.+|..+
T Consensus 362 ~L~~L~Ls~N~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~~lp~~~~~~~~L~~L~Ls~N~l~~l~~~~~~~L~~L~Ls~N 441 (549)
T 2z81_A 362 SLQTLVLSQNHLRSMQKTGEILLTLKNLTSLDISRNTFHPMPDSCQWPEKMRFLNLSSTGIRVVKTCIPQTLEVLDVSNN 441 (549)
T ss_dssp TCCEEECTTSCCCCHHHHHHHGGGCTTCCEEECTTCCCCCCCSCCCCCTTCCEEECTTSCCSCCCTTSCTTCSEEECCSS
T ss_pred cCcEEEccCCcccccccchhhhhcCCCCCEEECCCCCCccCChhhcccccccEEECCCCCcccccchhcCCceEEECCCC
Confidence 46889999999988753 578888999999999999888877888888888888888887665432
Q ss_pred ------hCCCCCceeeccCCccCCCcchHhhcCCCCCCEEEeeCCCCCCchhHHHHHHHhCCccccccCCC
Q 027557 71 ------AFNKKLQNLDLGKNLITRWSELKVLKSLVSLNNLNLQGNPVAEYDKLAKKVKNLLPSLHIFNARP 135 (222)
Q Consensus 71 ------~~l~~L~~L~L~~N~i~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~l~~~~ 135 (222)
..+++|+.|+|++|+|+.+|. ...+++|+.|++++|.++..++. .+..+++|+.++...
T Consensus 442 ~l~~~~~~l~~L~~L~Ls~N~l~~ip~---~~~l~~L~~L~Ls~N~l~~~~~~---~~~~l~~L~~L~l~~ 506 (549)
T 2z81_A 442 NLDSFSLFLPRLQELYISRNKLKTLPD---ASLFPVLLVMKISRNQLKSVPDG---IFDRLTSLQKIWLHT 506 (549)
T ss_dssp CCSCCCCCCTTCCEEECCSSCCSSCCC---GGGCTTCCEEECCSSCCCCCCTT---GGGGCTTCCEEECCS
T ss_pred ChhhhcccCChhcEEECCCCccCcCCC---cccCccCCEEecCCCccCCcCHH---HHhcCcccCEEEecC
Confidence 267889999999999998886 46789999999999999887653 235788888776543
No 71
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=99.60 E-value=3e-15 Score=128.01 Aligned_cols=83 Identities=22% Similarity=0.323 Sum_probs=44.2
Q ss_pred ccEEEeecCCCccch-hhhcCCCCCcEEEcccCCCccc-cccccCCccCCEEecccCcCCcCchh-hhCCCCCceeeccC
Q 027557 7 DCPAVLSRNPIREIG-DSLLNMKAITKLSLSNCQVQII-GSSLKSCTELKELRLAHNDIKTLPAE-LAFNKKLQNLDLGK 83 (222)
Q Consensus 7 ~~~L~L~~n~l~~lp-~~~~~l~~L~~L~L~~n~i~~l-p~~~~~l~~L~~L~l~~N~i~~lp~~-~~~l~~L~~L~L~~ 83 (222)
+++|+|++|.|+.++ ..|..+++|++|+|++|.|+.+ |..|..+++|++|+|++|+++.+|.. |..+++|++|+|++
T Consensus 34 l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~ 113 (477)
T 2id5_A 34 TRLLDLGKNRIKTLNQDEFASFPHLEELELNENIVSAVEPGAFNNLFNLRTLGLRSNRLKLIPLGVFTGLSNLTKLDISE 113 (477)
T ss_dssp CSEEECCSSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCSCCTTSSTTCTTCCEEECTT
T ss_pred CcEEECCCCccceECHhHccCCCCCCEEECCCCccCEeChhhhhCCccCCEEECCCCcCCccCcccccCCCCCCEEECCC
Confidence 455666666665553 3455555555555555555554 32355555555555555555555433 44455555555555
Q ss_pred CccCCC
Q 027557 84 NLITRW 89 (222)
Q Consensus 84 N~i~~~ 89 (222)
|.|..+
T Consensus 114 n~i~~~ 119 (477)
T 2id5_A 114 NKIVIL 119 (477)
T ss_dssp SCCCEE
T ss_pred CccccC
Confidence 554443
No 72
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=99.60 E-value=5.9e-15 Score=129.96 Aligned_cols=117 Identities=30% Similarity=0.380 Sum_probs=71.0
Q ss_pred ccEEEeecCCCccchhhhcCCCCCcEEEcccCCCccccccccCCccCCEEecccCcCCcCchhhhCCCCCceeeccCCcc
Q 027557 7 DCPAVLSRNPIREIGDSLLNMKAITKLSLSNCQVQIIGSSLKSCTELKELRLAHNDIKTLPAELAFNKKLQNLDLGKNLI 86 (222)
Q Consensus 7 ~~~L~L~~n~l~~lp~~~~~l~~L~~L~L~~n~i~~lp~~~~~l~~L~~L~l~~N~i~~lp~~~~~l~~L~~L~L~~N~i 86 (222)
++.|+|++|.|+.+++ +..+++|+.|+|++|.|+.+| .+..+++|+.|+|++|.|+.++ .+..+++|+.|+|++|.|
T Consensus 67 L~~L~Ls~N~l~~~~~-l~~l~~L~~L~Ls~N~l~~l~-~l~~l~~L~~L~Ls~N~l~~l~-~l~~l~~L~~L~Ls~N~l 143 (605)
T 1m9s_A 67 VTKLFLNGNKLTDIKP-LTNLKNLGWLFLDENKIKDLS-SLKDLKKLKSLSLEHNGISDIN-GLVHLPQLESLYLGNNKI 143 (605)
T ss_dssp CCEEECTTSCCCCCGG-GGGCTTCCEEECCSSCCCCCT-TSTTCTTCCEEECTTSCCCCCG-GGGGCTTCSEEECCSSCC
T ss_pred CCEEEeeCCCCCCChh-hccCCCCCEEECcCCCCCCCh-hhccCCCCCEEEecCCCCCCCc-cccCCCccCEEECCCCcc
Confidence 4666677776666654 666666666666666666655 5666666666666666666653 455666666666666666
Q ss_pred CCCcchHhhcCCCCCCEEEeeCCCCCCchhHHHHHHHhCCccccccCC
Q 027557 87 TRWSELKVLKSLVSLNNLNLQGNPVAEYDKLAKKVKNLLPSLHIFNAR 134 (222)
Q Consensus 87 ~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~l~~~ 134 (222)
..++ .+..+++|+.|+|++|.+...++ +..+++|+.|+..
T Consensus 144 ~~l~---~l~~l~~L~~L~Ls~N~l~~~~~-----l~~l~~L~~L~Ls 183 (605)
T 1m9s_A 144 TDIT---VLSRLTKLDTLSLEDNQISDIVP-----LAGLTKLQNLYLS 183 (605)
T ss_dssp CCCG---GGGSCTTCSEEECCSSCCCCCGG-----GTTCTTCCEEECC
T ss_pred CCch---hhcccCCCCEEECcCCcCCCchh-----hccCCCCCEEECc
Confidence 6652 35566666666666666655543 2345555555443
No 73
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=99.60 E-value=1.9e-15 Score=128.65 Aligned_cols=123 Identities=21% Similarity=0.262 Sum_probs=85.4
Q ss_pred CccEEEeecCCCccch-hhhcCCCCCcEEEcccCCCcccccc-ccCCccCCEEecccCcCCcCchh-hhCCCCCceeecc
Q 027557 6 RDCPAVLSRNPIREIG-DSLLNMKAITKLSLSNCQVQIIGSS-LKSCTELKELRLAHNDIKTLPAE-LAFNKKLQNLDLG 82 (222)
Q Consensus 6 ~~~~L~L~~n~l~~lp-~~~~~l~~L~~L~L~~n~i~~lp~~-~~~l~~L~~L~l~~N~i~~lp~~-~~~l~~L~~L~L~ 82 (222)
.+++|+|++|.|+.++ ..|..+++|++|+|++|.|+.+++. |..+++|++|+|++|+|+.+|.. |..+++|++|+|+
T Consensus 76 ~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~ 155 (452)
T 3zyi_A 76 NTRYLNLMENNIQMIQADTFRHLHHLEVLQLGRNSIRQIEVGAFNGLASLNTLELFDNWLTVIPSGAFEYLSKLRELWLR 155 (452)
T ss_dssp TCSEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSBCCTTTSSSCTTCCEEECC
T ss_pred CccEEECcCCcCceECHHHcCCCCCCCEEECCCCccCCcChhhccCcccCCEEECCCCcCCccChhhhcccCCCCEEECC
Confidence 4577888888888763 5677788888888888888876643 77788888888888888877654 6677788888888
Q ss_pred CCccCCCcchH-------------------------hhcCCCCCCEEEeeCCCCCCchhHHHHHHHhCCccccccCC
Q 027557 83 KNLITRWSELK-------------------------VLKSLVSLNNLNLQGNPVAEYDKLAKKVKNLLPSLHIFNAR 134 (222)
Q Consensus 83 ~N~i~~~~~~~-------------------------~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~l~~~ 134 (222)
+|.|..++. . .+..+++|+.|++++|.+..++. +..+++|+.|+..
T Consensus 156 ~N~l~~~~~-~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~~-----~~~l~~L~~L~Ls 226 (452)
T 3zyi_A 156 NNPIESIPS-YAFNRVPSLMRLDLGELKKLEYISEGAFEGLFNLKYLNLGMCNIKDMPN-----LTPLVGLEELEMS 226 (452)
T ss_dssp SCCCCEECT-TTTTTCTTCCEEECCCCTTCCEECTTTTTTCTTCCEEECTTSCCSSCCC-----CTTCTTCCEEECT
T ss_pred CCCcceeCH-hHHhcCCcccEEeCCCCCCccccChhhccCCCCCCEEECCCCccccccc-----ccccccccEEECc
Confidence 777776554 2 34455666666666666666553 2355666666543
No 74
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=99.60 E-value=1e-15 Score=123.70 Aligned_cols=123 Identities=20% Similarity=0.326 Sum_probs=63.4
Q ss_pred cEEEeecCCCccchh--hhcCCCCCcEEEcccCCCcccccc-ccCCccCCEEecccCcCCc--CchhhhCCCCCceeecc
Q 027557 8 CPAVLSRNPIREIGD--SLLNMKAITKLSLSNCQVQIIGSS-LKSCTELKELRLAHNDIKT--LPAELAFNKKLQNLDLG 82 (222)
Q Consensus 8 ~~L~L~~n~l~~lp~--~~~~l~~L~~L~L~~n~i~~lp~~-~~~l~~L~~L~l~~N~i~~--lp~~~~~l~~L~~L~L~ 82 (222)
++|+|++|.++.++. .+..+++|++|++++|.++.+++. +..+++|++|++++|.++. +|..+..+++|+.|+++
T Consensus 104 ~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~Ls 183 (306)
T 2z66_A 104 EHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLS 183 (306)
T ss_dssp CEEECTTSEEESSTTTTTTTTCTTCCEEECTTSCCEECSTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECT
T ss_pred CEEECCCCcccccccchhhhhccCCCEEECCCCcCCccchhhcccCcCCCEEECCCCccccccchhHHhhCcCCCEEECC
Confidence 344444444444432 344444555555555554442222 4455555555555555543 34445556666666666
Q ss_pred CCccCCCcchHhhcCCCCCCEEEeeCCCCCCchhHHHHHHHhCCccccccCC
Q 027557 83 KNLITRWSELKVLKSLVSLNNLNLQGNPVAEYDKLAKKVKNLLPSLHIFNAR 134 (222)
Q Consensus 83 ~N~i~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~l~~~ 134 (222)
+|.|.++++ ..+..+++|+.|++++|.+...+.. .+..+++|+.|+..
T Consensus 184 ~n~l~~~~~-~~~~~l~~L~~L~L~~N~l~~~~~~---~~~~l~~L~~L~L~ 231 (306)
T 2z66_A 184 QCQLEQLSP-TAFNSLSSLQVLNMSHNNFFSLDTF---PYKCLNSLQVLDYS 231 (306)
T ss_dssp TSCCCEECT-TTTTTCTTCCEEECTTSCCSBCCSG---GGTTCTTCCEEECT
T ss_pred CCCcCCcCH-HHhcCCCCCCEEECCCCccCccChh---hccCcccCCEeECC
Confidence 666665533 3555666666666666666655432 12345566655443
No 75
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=99.60 E-value=3.7e-15 Score=121.69 Aligned_cols=124 Identities=26% Similarity=0.333 Sum_probs=86.8
Q ss_pred CccEEEeecCCCccchh-hhcCCCCCcEEEcccCCCccc-cccccCCccCCEEecccCcCCcCchhhhCCCCCceeeccC
Q 027557 6 RDCPAVLSRNPIREIGD-SLLNMKAITKLSLSNCQVQII-GSSLKSCTELKELRLAHNDIKTLPAELAFNKKLQNLDLGK 83 (222)
Q Consensus 6 ~~~~L~L~~n~l~~lp~-~~~~l~~L~~L~L~~n~i~~l-p~~~~~l~~L~~L~l~~N~i~~lp~~~~~l~~L~~L~L~~ 83 (222)
.+++|+|++|.|+.+++ .|..+++|++|+|++|.|+.+ |..+..+++|++|++++|.++.+|..+. ++|++|++++
T Consensus 53 ~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~l~~~~~--~~L~~L~l~~ 130 (330)
T 1xku_A 53 DTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKNQLKELPEKMP--KTLQELRVHE 130 (330)
T ss_dssp TCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCSBCCSSCC--TTCCEEECCS
T ss_pred CCeEEECCCCcCCEeChhhhccCCCCCEEECCCCcCCeeCHHHhcCCCCCCEEECCCCcCCccChhhc--ccccEEECCC
Confidence 45788888888888765 678888888888888888886 5558888888888888888887775543 5777777777
Q ss_pred CccCCCcchHhhcCCCCCCEEEeeCCCCCCchhHHHHHHHhCCccccccC
Q 027557 84 NLITRWSELKVLKSLVSLNNLNLQGNPVAEYDKLAKKVKNLLPSLHIFNA 133 (222)
Q Consensus 84 N~i~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~l~~ 133 (222)
|.|..++. ..+..+++|+.|++++|.+....... ..+..+++|+.++.
T Consensus 131 n~l~~~~~-~~~~~l~~L~~L~l~~n~l~~~~~~~-~~~~~l~~L~~L~l 178 (330)
T 1xku_A 131 NEITKVRK-SVFNGLNQMIVVELGTNPLKSSGIEN-GAFQGMKKLSYIRI 178 (330)
T ss_dssp SCCCBBCH-HHHTTCTTCCEEECCSSCCCGGGBCT-TGGGGCTTCCEEEC
T ss_pred CcccccCH-hHhcCCccccEEECCCCcCCccCcCh-hhccCCCCcCEEEC
Confidence 77777665 55677777777777777665321000 12234555555543
No 76
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=99.59 E-value=7.4e-17 Score=122.70 Aligned_cols=126 Identities=25% Similarity=0.286 Sum_probs=108.7
Q ss_pred CCCccEEEeecC--CCccchhhhcCCCCCcEEEcccCCCccccccccCCccCCEEecccCcCCcCchhhhCCCCCceeec
Q 027557 4 GIRDCPAVLSRN--PIREIGDSLLNMKAITKLSLSNCQVQIIGSSLKSCTELKELRLAHNDIKTLPAELAFNKKLQNLDL 81 (222)
Q Consensus 4 ~~~~~~L~L~~n--~l~~lp~~~~~l~~L~~L~L~~n~i~~lp~~~~~l~~L~~L~l~~N~i~~lp~~~~~l~~L~~L~L 81 (222)
.+.++.+.++++ .++.+|..+..+++|++|+|++|.|+.+| .+..+++|++|++++|.|+.+|..+..+++|+.|++
T Consensus 22 ~l~l~~~~l~~~~~~l~~l~~~~~~l~~L~~L~ls~n~l~~l~-~~~~l~~L~~L~l~~n~l~~l~~~~~~~~~L~~L~L 100 (198)
T 1ds9_A 22 ATEAEKVELHGMIPPIEKMDATLSTLKACKHLALSTNNIEKIS-SLSGMENLRILSLGRNLIKKIENLDAVADTLEELWI 100 (198)
T ss_dssp CTTCSEEECCBCCTTCCCCHHHHHHTTTCSEEECSEEEESCCC-CHHHHTTCCEEEEEEEEECSCSSHHHHHHHCSEEEE
T ss_pred CcchheeEeccccCcHhhhhHHHhcCCCCCEEECCCCCCcccc-ccccCCCCCEEECCCCCcccccchhhcCCcCCEEEC
Confidence 455666677665 67788889999999999999999999999 899999999999999999999988888899999999
Q ss_pred cCCccCCCcchHhhcCCCCCCEEEeeCCCCCCchhHHHHHHHhCCccccccCCC
Q 027557 82 GKNLITRWSELKVLKSLVSLNNLNLQGNPVAEYDKLAKKVKNLLPSLHIFNARP 135 (222)
Q Consensus 82 ~~N~i~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~l~~~~ 135 (222)
++|.|.+++ .+..+++|++|++++|.+..++.. ..+..+++|+.++...
T Consensus 101 ~~N~l~~l~---~~~~l~~L~~L~l~~N~i~~~~~~--~~l~~l~~L~~L~l~~ 149 (198)
T 1ds9_A 101 SYNQIASLS---GIEKLVNLRVLYMSNNKITNWGEI--DKLAALDKLEDLLLAG 149 (198)
T ss_dssp EEEECCCHH---HHHHHHHSSEEEESEEECCCHHHH--HHHTTTTTCSEEEECS
T ss_pred cCCcCCcCC---ccccCCCCCEEECCCCcCCchhHH--HHHhcCCCCCEEEecC
Confidence 999999975 588899999999999999987652 2456789999887654
No 77
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=99.59 E-value=2.7e-15 Score=127.25 Aligned_cols=123 Identities=24% Similarity=0.285 Sum_probs=75.7
Q ss_pred ccEEEeecCCCccch-hhhcCCCCCcEEEcccCCCcccccc-ccCCccCCEEecccCcCCcCch-hhhCCCCCceeeccC
Q 027557 7 DCPAVLSRNPIREIG-DSLLNMKAITKLSLSNCQVQIIGSS-LKSCTELKELRLAHNDIKTLPA-ELAFNKKLQNLDLGK 83 (222)
Q Consensus 7 ~~~L~L~~n~l~~lp-~~~~~l~~L~~L~L~~n~i~~lp~~-~~~l~~L~~L~l~~N~i~~lp~-~~~~l~~L~~L~L~~ 83 (222)
++.|+|++|.|+.++ ..|..+++|++|+|++|.|+.++.. |..+++|++|+|++|+|+.+|. .|..+++|++|+|++
T Consensus 66 l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~ 145 (440)
T 3zyj_A 66 TRLLNLHENQIQIIKVNSFKHLRHLEILQLSRNHIRTIEIGAFNGLANLNTLELFDNRLTTIPNGAFVYLSKLKELWLRN 145 (440)
T ss_dssp CSEEECCSCCCCEECTTTTSSCSSCCEEECCSSCCCEECGGGGTTCSSCCEEECCSSCCSSCCTTTSCSCSSCCEEECCS
T ss_pred CcEEEccCCcCCeeCHHHhhCCCCCCEEECCCCcCCccChhhccCCccCCEEECCCCcCCeeCHhHhhccccCceeeCCC
Confidence 456667777766654 4566666666666666666665533 6666666666666666666654 356666666666666
Q ss_pred CccCCCcc------------------------hHhhcCCCCCCEEEeeCCCCCCchhHHHHHHHhCCccccccCC
Q 027557 84 NLITRWSE------------------------LKVLKSLVSLNNLNLQGNPVAEYDKLAKKVKNLLPSLHIFNAR 134 (222)
Q Consensus 84 N~i~~~~~------------------------~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~l~~~ 134 (222)
|.|..++. ...|..+++|+.|++++|.+..++. +..+++|+.|+..
T Consensus 146 N~i~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~~-----~~~l~~L~~L~Ls 215 (440)
T 3zyj_A 146 NPIESIPSYAFNRIPSLRRLDLGELKRLSYISEGAFEGLSNLRYLNLAMCNLREIPN-----LTPLIKLDELDLS 215 (440)
T ss_dssp CCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCSSCCEEECTTSCCSSCCC-----CTTCSSCCEEECT
T ss_pred CcccccCHHHhhhCcccCEeCCCCCCCcceeCcchhhcccccCeecCCCCcCccccc-----cCCCcccCEEECC
Confidence 66655443 0235556666666666666666653 2356666666554
No 78
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=99.59 E-value=7.9e-15 Score=129.12 Aligned_cols=118 Identities=27% Similarity=0.332 Sum_probs=101.0
Q ss_pred CccEEEeecCCCccchhhhcCCCCCcEEEcccCCCccccccccCCccCCEEecccCcCCcCchhhhCCCCCceeeccCCc
Q 027557 6 RDCPAVLSRNPIREIGDSLLNMKAITKLSLSNCQVQIIGSSLKSCTELKELRLAHNDIKTLPAELAFNKKLQNLDLGKNL 85 (222)
Q Consensus 6 ~~~~L~L~~n~l~~lp~~~~~l~~L~~L~L~~n~i~~lp~~~~~l~~L~~L~l~~N~i~~lp~~~~~l~~L~~L~L~~N~ 85 (222)
.++.|+|++|.|..+| .+..+++|+.|+|++|.|+.++ .+..+++|+.|+|++|.|+.+ ..+..+++|+.|+|++|.
T Consensus 88 ~L~~L~Ls~N~l~~l~-~l~~l~~L~~L~Ls~N~l~~l~-~l~~l~~L~~L~Ls~N~l~~l-~~l~~l~~L~~L~Ls~N~ 164 (605)
T 1m9s_A 88 NLGWLFLDENKIKDLS-SLKDLKKLKSLSLEHNGISDIN-GLVHLPQLESLYLGNNKITDI-TVLSRLTKLDTLSLEDNQ 164 (605)
T ss_dssp TCCEEECCSSCCCCCT-TSTTCTTCCEEECTTSCCCCCG-GGGGCTTCSEEECCSSCCCCC-GGGGSCTTCSEEECCSSC
T ss_pred CCCEEECcCCCCCCCh-hhccCCCCCEEEecCCCCCCCc-cccCCCccCEEECCCCccCCc-hhhcccCCCCEEECcCCc
Confidence 4689999999999885 6888999999999999999886 688899999999999999988 578899999999999999
Q ss_pred cCCCcchHhhcCCCCCCEEEeeCCCCCCchhHHHHHHHhCCccccccCC
Q 027557 86 ITRWSELKVLKSLVSLNNLNLQGNPVAEYDKLAKKVKNLLPSLHIFNAR 134 (222)
Q Consensus 86 i~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~l~~~ 134 (222)
|.++++ +..+++|+.|+|++|.|..++. +..+++|+.|+..
T Consensus 165 l~~~~~---l~~l~~L~~L~Ls~N~i~~l~~-----l~~l~~L~~L~L~ 205 (605)
T 1m9s_A 165 ISDIVP---LAGLTKLQNLYLSKNHISDLRA-----LAGLKNLDVLELF 205 (605)
T ss_dssp CCCCGG---GTTCTTCCEEECCSSCCCBCGG-----GTTCTTCSEEECC
T ss_pred CCCchh---hccCCCCCEEECcCCCCCCChH-----HccCCCCCEEEcc
Confidence 998765 8889999999999999988754 3467888877654
No 79
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=99.59 E-value=4e-15 Score=129.60 Aligned_cols=125 Identities=24% Similarity=0.319 Sum_probs=99.0
Q ss_pred CccEEEeecCCCccchh-hhcCCCCCcEEEcccCCCcccccc-ccCCccCCEEecccCcCCcCc-hhhhCCCCCceeecc
Q 027557 6 RDCPAVLSRNPIREIGD-SLLNMKAITKLSLSNCQVQIIGSS-LKSCTELKELRLAHNDIKTLP-AELAFNKKLQNLDLG 82 (222)
Q Consensus 6 ~~~~L~L~~n~l~~lp~-~~~~l~~L~~L~L~~n~i~~lp~~-~~~l~~L~~L~l~~N~i~~lp-~~~~~l~~L~~L~L~ 82 (222)
.+++|+|++|.|+.+++ .|..+++|++|+|++|.|+.+++. |..+++|++|++++|.++.+| ..|..+++|++|+++
T Consensus 29 ~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~ 108 (570)
T 2z63_A 29 STKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAV 108 (570)
T ss_dssp SCCEEECCSCCCCEECTTTTTTCSSCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECT
T ss_pred cccEEEccCCccCccChhHhhCCCCceEEECCCCcCCccCcccccCchhCCEEeCcCCcCCccCHhhhcCcccccccccc
Confidence 46788999999888754 788889999999999988887654 888889999999999888775 458888888888888
Q ss_pred CCccCCCcchHhhcCCCCCCEEEeeCCCCCC--chhHHHHHHHhCCccccccCCC
Q 027557 83 KNLITRWSELKVLKSLVSLNNLNLQGNPVAE--YDKLAKKVKNLLPSLHIFNARP 135 (222)
Q Consensus 83 ~N~i~~~~~~~~~~~l~~L~~L~l~~N~l~~--~~~~~~~~~~~l~~L~~l~~~~ 135 (222)
+|.+..++. ..++.+++|++|++++|.+.. +|. .+..+++|+.|+...
T Consensus 109 ~n~l~~l~~-~~~~~l~~L~~L~L~~n~l~~~~lp~----~~~~l~~L~~L~l~~ 158 (570)
T 2z63_A 109 ETNLASLEN-FPIGHLKTLKELNVAHNLIQSFKLPE----YFSNLTNLEHLDLSS 158 (570)
T ss_dssp TSCCCCSTT-CSCTTCTTCCEEECCSSCCCCCCCCG----GGGGCTTCCEEECTT
T ss_pred ccccccCCC-ccccccccccEEecCCCccceecChh----hhcccCCCCEEeCcC
Confidence 888888775 357888888888888888876 343 234678888776653
No 80
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=99.59 E-value=8.2e-15 Score=126.55 Aligned_cols=122 Identities=21% Similarity=0.244 Sum_probs=97.8
Q ss_pred CccEEEeecCCCccc---hhhhcCCCCCcEEEcccCCCcc-cccc-ccCCccCCEEecccCcCC-cCchhhhCCCCCcee
Q 027557 6 RDCPAVLSRNPIREI---GDSLLNMKAITKLSLSNCQVQI-IGSS-LKSCTELKELRLAHNDIK-TLPAELAFNKKLQNL 79 (222)
Q Consensus 6 ~~~~L~L~~n~l~~l---p~~~~~l~~L~~L~L~~n~i~~-lp~~-~~~l~~L~~L~l~~N~i~-~lp~~~~~l~~L~~L 79 (222)
.+++|+|++|.|+.+ |..+..+++|++|++++|.++. +|.. +..+++|++|++++|+++ .+|..+. ++|+.|
T Consensus 349 ~L~~L~L~~N~l~~l~~~~~~~~~l~~L~~L~Ls~N~l~~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~--~~L~~L 426 (520)
T 2z7x_B 349 ELETLILQMNQLKELSKIAEMTTQMKSLQQLDISQNSVSYDEKKGDCSWTKSLLSLNMSSNILTDTIFRCLP--PRIKVL 426 (520)
T ss_dssp SCCEEECCSSCCCBHHHHHHHHTTCTTCCEEECCSSCCBCCGGGCSCCCCTTCCEEECCSSCCCGGGGGSCC--TTCCEE
T ss_pred CCCEEEccCCccCccccchHHHhhCCCCCEEECCCCcCCcccccchhccCccCCEEECcCCCCCcchhhhhc--ccCCEE
Confidence 468999999999964 4578899999999999999998 8876 788889999999999886 4444332 688999
Q ss_pred eccCCccCCCcchHhhcCCCCCCEEEeeCCCCCCchhHHHHHHHhCCccccccCC
Q 027557 80 DLGKNLITRWSELKVLKSLVSLNNLNLQGNPVAEYDKLAKKVKNLLPSLHIFNAR 134 (222)
Q Consensus 80 ~L~~N~i~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~l~~~ 134 (222)
++++|+|+.+|. .+..+++|++|++++|++..++.. .+..+++|+.++..
T Consensus 427 ~Ls~N~l~~ip~--~~~~l~~L~~L~L~~N~l~~l~~~---~~~~l~~L~~L~l~ 476 (520)
T 2z7x_B 427 DLHSNKIKSIPK--QVVKLEALQELNVASNQLKSVPDG---IFDRLTSLQKIWLH 476 (520)
T ss_dssp ECCSSCCCCCCG--GGGGCTTCCEEECCSSCCCCCCTT---TTTTCTTCCEEECC
T ss_pred ECCCCcccccch--hhhcCCCCCEEECCCCcCCccCHH---HhccCCcccEEECc
Confidence 999999988886 566888999999999988887753 23467778776544
No 81
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=99.59 E-value=1.1e-15 Score=124.23 Aligned_cols=104 Identities=16% Similarity=0.224 Sum_probs=74.1
Q ss_pred ccEEEeec-CCCc-cchhhhcCCCCCcEEEcccCCCc-cccccccCCccCCEEecccCcCC-cCchhhhCCCCCceeecc
Q 027557 7 DCPAVLSR-NPIR-EIGDSLLNMKAITKLSLSNCQVQ-IIGSSLKSCTELKELRLAHNDIK-TLPAELAFNKKLQNLDLG 82 (222)
Q Consensus 7 ~~~L~L~~-n~l~-~lp~~~~~l~~L~~L~L~~n~i~-~lp~~~~~l~~L~~L~l~~N~i~-~lp~~~~~l~~L~~L~L~ 82 (222)
+++|+|++ |.+. .+|..|..+++|++|+|++|.|+ .+|..+..+++|++|++++|.++ .+|..+..+++|++|+++
T Consensus 78 L~~L~L~~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~ 157 (313)
T 1ogq_A 78 LNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSISSLPNLVGITFD 157 (313)
T ss_dssp CSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEEECCGGGGGCTTCCEEECCSSEEESCCCGGGGGCTTCCEEECC
T ss_pred CCeeeCCCCCcccccCChhHhcCCCCCEEECcCCeeCCcCCHHHhCCCCCCEEeCCCCccCCcCChHHhcCCCCCeEECc
Confidence 46777774 7766 56667777777777777777777 36656777777777777777777 566667777777777777
Q ss_pred CCccC-CCcchHhhcCCC-CCCEEEeeCCCCC
Q 027557 83 KNLIT-RWSELKVLKSLV-SLNNLNLQGNPVA 112 (222)
Q Consensus 83 ~N~i~-~~~~~~~~~~l~-~L~~L~l~~N~l~ 112 (222)
+|.|. .+|. .+..++ +|+.|++++|.+.
T Consensus 158 ~N~l~~~~p~--~l~~l~~~L~~L~L~~N~l~ 187 (313)
T 1ogq_A 158 GNRISGAIPD--SYGSFSKLFTSMTISRNRLT 187 (313)
T ss_dssp SSCCEEECCG--GGGCCCTTCCEEECCSSEEE
T ss_pred CCcccCcCCH--HHhhhhhcCcEEECcCCeee
Confidence 77776 4444 566666 7777777777665
No 82
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=99.58 E-value=5.2e-15 Score=125.96 Aligned_cols=112 Identities=18% Similarity=0.200 Sum_probs=85.3
Q ss_pred CccEEEeecCCCccchhhhcCCCCCcEEEcccCCCcccc-ccccCCccCCEEecccCcCCcC-chhhhCCCCCceeeccC
Q 027557 6 RDCPAVLSRNPIREIGDSLLNMKAITKLSLSNCQVQIIG-SSLKSCTELKELRLAHNDIKTL-PAELAFNKKLQNLDLGK 83 (222)
Q Consensus 6 ~~~~L~L~~n~l~~lp~~~~~l~~L~~L~L~~n~i~~lp-~~~~~l~~L~~L~l~~N~i~~l-p~~~~~l~~L~~L~L~~ 83 (222)
.+++|+|++|.|+.+| .+..+++|+.|+|++|.|+.++ ..|..+++|++|++++|+++.+ |..|..+++|+.|+|++
T Consensus 197 ~L~~L~L~~n~l~~~~-~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~ 275 (452)
T 3zyi_A 197 NLKYLNLGMCNIKDMP-NLTPLVGLEELEMSGNHFPEIRPGSFHGLSSLKKLWVMNSQVSLIERNAFDGLASLVELNLAH 275 (452)
T ss_dssp TCCEEECTTSCCSSCC-CCTTCTTCCEEECTTSCCSEECGGGGTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCS
T ss_pred CCCEEECCCCcccccc-cccccccccEEECcCCcCcccCcccccCccCCCEEEeCCCcCceECHHHhcCCCCCCEEECCC
Confidence 3467777778777774 4667778888888888887764 3477888888888888888865 44577788888888888
Q ss_pred CccCCCcchHhhcCCCCCCEEEeeCCCCCCchhHHH
Q 027557 84 NLITRWSELKVLKSLVSLNNLNLQGNPVAEYDKLAK 119 (222)
Q Consensus 84 N~i~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~ 119 (222)
|+|+.++. ..+..+++|+.|++++||+.|.+...+
T Consensus 276 N~l~~~~~-~~~~~l~~L~~L~L~~Np~~CdC~~~~ 310 (452)
T 3zyi_A 276 NNLSSLPH-DLFTPLRYLVELHLHHNPWNCDCDILW 310 (452)
T ss_dssp SCCSCCCT-TSSTTCTTCCEEECCSSCEECSTTTHH
T ss_pred CcCCccCh-HHhccccCCCEEEccCCCcCCCCCchH
Confidence 88888776 567778888888888888888776543
No 83
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.58 E-value=3.3e-15 Score=131.49 Aligned_cols=126 Identities=16% Similarity=0.248 Sum_probs=109.8
Q ss_pred CccEEEeecCCCccchh-hhcCCCCCcEEEcccCCCccccc-cccCCccCCEEecccCcCCcCchh-hhCCCCCceeecc
Q 027557 6 RDCPAVLSRNPIREIGD-SLLNMKAITKLSLSNCQVQIIGS-SLKSCTELKELRLAHNDIKTLPAE-LAFNKKLQNLDLG 82 (222)
Q Consensus 6 ~~~~L~L~~n~l~~lp~-~~~~l~~L~~L~L~~n~i~~lp~-~~~~l~~L~~L~l~~N~i~~lp~~-~~~l~~L~~L~L~ 82 (222)
.++.|++++|.++.+|+ .+..+++|++|+|++|.|+.+++ .|..+++|++|+|++|.|+.+|+. |..+++|++|+|+
T Consensus 52 ~l~~l~l~~~~l~~lp~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~ 131 (597)
T 3oja_B 52 NQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLE 131 (597)
T ss_dssp CCSEEEESSCEESEECTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECC
T ss_pred CceEEEeeCCCCCCcCHHHHccCCCCcEEECCCCCCCCCChHHhcCCCCCCEEECCCCcCCCCCHHHHcCCCCCCEEEee
Confidence 34789999999999986 46789999999999999999876 599999999999999999988654 7999999999999
Q ss_pred CCccCCCcchHhhcCCCCCCEEEeeCCCCCCchhHHHHHHHhCCccccccCCC
Q 027557 83 KNLITRWSELKVLKSLVSLNNLNLQGNPVAEYDKLAKKVKNLLPSLHIFNARP 135 (222)
Q Consensus 83 ~N~i~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~l~~~~ 135 (222)
+|.|..+|+ ..|+.+++|++|++++|.+...++. .+..+++|+.|+...
T Consensus 132 ~n~l~~l~~-~~~~~l~~L~~L~Ls~N~l~~~~~~---~~~~l~~L~~L~L~~ 180 (597)
T 3oja_B 132 RNDLSSLPR-GIFHNTPKLTTLSMSNNNLERIEDD---TFQATTSLQNLQLSS 180 (597)
T ss_dssp SSCCCCCCT-TTTTTCTTCCEEECCSSCCCBCCTT---TTTTCTTCCEEECTT
T ss_pred CCCCCCCCH-HHhccCCCCCEEEeeCCcCCCCChh---hhhcCCcCcEEECcC
Confidence 999999987 5579999999999999999887653 335788888886653
No 84
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=99.57 E-value=3.7e-15 Score=129.41 Aligned_cols=126 Identities=21% Similarity=0.234 Sum_probs=102.2
Q ss_pred CccEEEeecCCCccch-hhhcCCCCCcEEEcccCCCccccc-cccCCccCCEEecccCcCCcCchh-hhCCCCCceeecc
Q 027557 6 RDCPAVLSRNPIREIG-DSLLNMKAITKLSLSNCQVQIIGS-SLKSCTELKELRLAHNDIKTLPAE-LAFNKKLQNLDLG 82 (222)
Q Consensus 6 ~~~~L~L~~n~l~~lp-~~~~~l~~L~~L~L~~n~i~~lp~-~~~~l~~L~~L~l~~N~i~~lp~~-~~~l~~L~~L~L~ 82 (222)
.+++|+|++|.|+.++ ..|..+++|++|+|++|.|+.+++ .|..+++|++|++++|+++.+|.. +..+++|++|+++
T Consensus 27 ~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls 106 (549)
T 2z81_A 27 AMKSLDLSFNKITYIGHGDLRACANLQVLILKSSRINTIEGDAFYSLGSLEHLDLSDNHLSSLSSSWFGPLSSLKYLNLM 106 (549)
T ss_dssp TCCEEECCSSCCCEECSSTTSSCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCSCCHHHHTTCTTCCEEECT
T ss_pred CccEEECcCCccCccChhhhhcCCcccEEECCCCCcCccChhhccccccCCEEECCCCccCccCHHHhccCCCCcEEECC
Confidence 5789999999999874 578999999999999999999775 489999999999999999988665 9999999999999
Q ss_pred CCccCCCcchHhhcCCCCCCEEEeeCCC-CCCchhHHHHHHHhCCccccccCC
Q 027557 83 KNLITRWSELKVLKSLVSLNNLNLQGNP-VAEYDKLAKKVKNLLPSLHIFNAR 134 (222)
Q Consensus 83 ~N~i~~~~~~~~~~~l~~L~~L~l~~N~-l~~~~~~~~~~~~~l~~L~~l~~~ 134 (222)
+|.+..++....++.+++|++|++++|. +..++.. .+..+++|+.|+..
T Consensus 107 ~n~l~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~---~~~~l~~L~~L~L~ 156 (549)
T 2z81_A 107 GNPYQTLGVTSLFPNLTNLQTLRIGNVETFSEIRRI---DFAGLTSLNELEIK 156 (549)
T ss_dssp TCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTT---TTTTCCEEEEEEEE
T ss_pred CCcccccchhhhhhccCCccEEECCCCccccccCHh---hhhcccccCeeecc
Confidence 9999865321368889999999999987 5555421 22456777766543
No 85
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=99.57 E-value=7.9e-15 Score=119.74 Aligned_cols=107 Identities=21% Similarity=0.287 Sum_probs=87.0
Q ss_pred CccEEEeecCCCccchhhhcCCCCCcEEEcccCCCcccc-ccccCCccCCEEecccCcCCcCch-hhhCCCCCceeeccC
Q 027557 6 RDCPAVLSRNPIREIGDSLLNMKAITKLSLSNCQVQIIG-SSLKSCTELKELRLAHNDIKTLPA-ELAFNKKLQNLDLGK 83 (222)
Q Consensus 6 ~~~~L~L~~n~l~~lp~~~~~l~~L~~L~L~~n~i~~lp-~~~~~l~~L~~L~l~~N~i~~lp~-~~~~l~~L~~L~L~~ 83 (222)
.+++|++++|.++.+|..+. ++|++|++++|.|+.++ ..+..+++|++|++++|.++.++. .+..+++|+.|+|++
T Consensus 172 ~L~~L~l~~n~l~~l~~~~~--~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~ 249 (330)
T 1xku_A 172 KLSYIRIADTNITTIPQGLP--PSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNN 249 (330)
T ss_dssp TCCEEECCSSCCCSCCSSCC--TTCSEEECTTSCCCEECTGGGTTCTTCCEEECCSSCCCEECTTTGGGSTTCCEEECCS
T ss_pred CcCEEECCCCccccCCcccc--ccCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCceeChhhccCCCCCCEEECCC
Confidence 45788888988888876543 78888888888888864 458888888888888888886654 588888888888888
Q ss_pred CccCCCcchHhhcCCCCCCEEEeeCCCCCCchh
Q 027557 84 NLITRWSELKVLKSLVSLNNLNLQGNPVAEYDK 116 (222)
Q Consensus 84 N~i~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~ 116 (222)
|.|..+|. .+..+++|+.|++++|+++.++.
T Consensus 250 N~l~~lp~--~l~~l~~L~~L~l~~N~i~~~~~ 280 (330)
T 1xku_A 250 NKLVKVPG--GLADHKYIQVVYLHNNNISAIGS 280 (330)
T ss_dssp SCCSSCCT--TTTTCSSCCEEECCSSCCCCCCT
T ss_pred CcCccCCh--hhccCCCcCEEECCCCcCCccCh
Confidence 88888876 68888888888888888887764
No 86
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.57 E-value=3.4e-15 Score=128.40 Aligned_cols=106 Identities=20% Similarity=0.173 Sum_probs=54.0
Q ss_pred ccEEEeecCCCccch-hhhcCCCCCcEEEcccCCCccc-ccccc-CCccCCEEecccCcCCcCchhhhCCCCCceeeccC
Q 027557 7 DCPAVLSRNPIREIG-DSLLNMKAITKLSLSNCQVQII-GSSLK-SCTELKELRLAHNDIKTLPAELAFNKKLQNLDLGK 83 (222)
Q Consensus 7 ~~~L~L~~n~l~~lp-~~~~~l~~L~~L~L~~n~i~~l-p~~~~-~l~~L~~L~l~~N~i~~lp~~~~~l~~L~~L~L~~ 83 (222)
+++|+|++|.|+.++ ..+..+++|++|+|++|.|+.+ |..+. .+++|++|+|++|.|+.+| .+..+++|+.|+|++
T Consensus 122 L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~~l~~L~~L~Ls~N~l~~~~-~~~~l~~L~~L~Ls~ 200 (487)
T 3oja_A 122 KKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIYDVK-GQVVFAKLKTLDLSS 200 (487)
T ss_dssp CEEEECCSSCCCSGGGBCGGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTSCCCEEE-CCCCCTTCCEEECCS
T ss_pred CCEEECCCCCCCCCCchhhcCCCCCCEEECCCCCCCCcChHHHhhhCCcccEEecCCCcccccc-ccccCCCCCEEECCC
Confidence 355566666665543 2455555566666666655552 22232 4555555555555555443 222345555555555
Q ss_pred CccCCCcchHhhcCCCCCCEEEeeCCCCCCch
Q 027557 84 NLITRWSELKVLKSLVSLNNLNLQGNPVAEYD 115 (222)
Q Consensus 84 N~i~~~~~~~~~~~l~~L~~L~l~~N~l~~~~ 115 (222)
|.|+++++ .+..+++|+.|++++|.+..+|
T Consensus 201 N~l~~~~~--~~~~l~~L~~L~Ls~N~l~~lp 230 (487)
T 3oja_A 201 NKLAFMGP--EFQSAAGVTWISLRNNKLVLIE 230 (487)
T ss_dssp SCCCEECG--GGGGGTTCSEEECTTSCCCEEC
T ss_pred CCCCCCCH--hHcCCCCccEEEecCCcCcccc
Confidence 55555444 3445555555555555555444
No 87
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=99.57 E-value=4e-15 Score=122.62 Aligned_cols=106 Identities=28% Similarity=0.312 Sum_probs=53.2
Q ss_pred ccEEEeecCCCccch-hhhcCCCCCcEEEcccCCCcccccc-ccCCccCCEEecccCcCCcCch--hhhCCCCCceeecc
Q 027557 7 DCPAVLSRNPIREIG-DSLLNMKAITKLSLSNCQVQIIGSS-LKSCTELKELRLAHNDIKTLPA--ELAFNKKLQNLDLG 82 (222)
Q Consensus 7 ~~~L~L~~n~l~~lp-~~~~~l~~L~~L~L~~n~i~~lp~~-~~~l~~L~~L~l~~N~i~~lp~--~~~~l~~L~~L~L~ 82 (222)
+++|+|++|.|+.++ ..|..+++|++|+|++|.|+.+|.. +..+++|++|++++|+++.+|. .+..+++|++|+++
T Consensus 78 L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~~l~~L~~L~l~ 157 (353)
T 2z80_A 78 LQALVLTSNGINTIEEDSFSSLGSLEHLDLSYNYLSNLSSSWFKPLSSLTFLNLLGNPYKTLGETSLFSHLTKLQILRVG 157 (353)
T ss_dssp CCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSSCCHHHHTTCTTCSEEECTTCCCSSSCSSCSCTTCTTCCEEEEE
T ss_pred CCEEECCCCccCccCHhhcCCCCCCCEEECCCCcCCcCCHhHhCCCccCCEEECCCCCCcccCchhhhccCCCCcEEECC
Confidence 355555555555543 2455555555555555555555544 4555555555555555555543 34455555555555
Q ss_pred CC-ccCCCcchHhhcCCCCCCEEEeeCCCCCC
Q 027557 83 KN-LITRWSELKVLKSLVSLNNLNLQGNPVAE 113 (222)
Q Consensus 83 ~N-~i~~~~~~~~~~~l~~L~~L~l~~N~l~~ 113 (222)
+| .+..+++ ..+..+++|++|++++|.+..
T Consensus 158 ~n~~~~~~~~-~~~~~l~~L~~L~l~~n~l~~ 188 (353)
T 2z80_A 158 NMDTFTKIQR-KDFAGLTFLEELEIDASDLQS 188 (353)
T ss_dssp ESSSCCEECT-TTTTTCCEEEEEEEEETTCCE
T ss_pred CCccccccCH-HHccCCCCCCEEECCCCCcCc
Confidence 55 2444332 234444444444444444433
No 88
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=99.57 E-value=2.8e-15 Score=121.98 Aligned_cols=103 Identities=18% Similarity=0.200 Sum_probs=53.6
Q ss_pred ccEEEeecCCCccch-hhh-cCCCCCcEEEcccCCCccccccccCCccCCEEecccCcCCcCchhhhCCCCCceeeccCC
Q 027557 7 DCPAVLSRNPIREIG-DSL-LNMKAITKLSLSNCQVQIIGSSLKSCTELKELRLAHNDIKTLPAELAFNKKLQNLDLGKN 84 (222)
Q Consensus 7 ~~~L~L~~n~l~~lp-~~~-~~l~~L~~L~L~~n~i~~lp~~~~~l~~L~~L~l~~N~i~~lp~~~~~l~~L~~L~L~~N 84 (222)
+++|+|++|.|+.++ ..+ ..+++|++|+|++|.|+.+| ....+++|++|++++|+|+.+|..+..+++|+.|+|++|
T Consensus 146 L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~~~~-~~~~l~~L~~L~Ls~N~l~~l~~~~~~l~~L~~L~L~~N 224 (317)
T 3o53_A 146 VQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIYDVK-GQVVFAKLKTLDLSSNKLAFMGPEFQSAAGVTWISLRNN 224 (317)
T ss_dssp EEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTSCCCEEE-CCCCCTTCCEEECCSSCCCEECGGGGGGTTCSEEECTTS
T ss_pred CCEEECCCCCCCcccHHHHhhccCcCCEEECCCCcCcccc-cccccccCCEEECCCCcCCcchhhhcccCcccEEECcCC
Confidence 345555555555442 233 24555555555555555554 222355555555555555555444555555555555555
Q ss_pred ccCCCcchHhhcCCCCCCEEEeeCCCCC
Q 027557 85 LITRWSELKVLKSLVSLNNLNLQGNPVA 112 (222)
Q Consensus 85 ~i~~~~~~~~~~~l~~L~~L~l~~N~l~ 112 (222)
.|..+|. .+..+++|+.|++++|++.
T Consensus 225 ~l~~l~~--~~~~l~~L~~L~l~~N~~~ 250 (317)
T 3o53_A 225 KLVLIEK--ALRFSQNLEHFDLRGNGFH 250 (317)
T ss_dssp CCCEECT--TCCCCTTCCEEECTTCCCB
T ss_pred cccchhh--HhhcCCCCCEEEccCCCcc
Confidence 5555544 4555555555555555555
No 89
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=99.57 E-value=9.7e-15 Score=127.47 Aligned_cols=107 Identities=21% Similarity=0.252 Sum_probs=86.1
Q ss_pred CccEEEeecCCCccch-hhhcCCCCCcEEEcccCCCccccc-cccCCccCCEEecccCcCCcCchhhhCCCCCceeeccC
Q 027557 6 RDCPAVLSRNPIREIG-DSLLNMKAITKLSLSNCQVQIIGS-SLKSCTELKELRLAHNDIKTLPAELAFNKKLQNLDLGK 83 (222)
Q Consensus 6 ~~~~L~L~~n~l~~lp-~~~~~l~~L~~L~L~~n~i~~lp~-~~~~l~~L~~L~l~~N~i~~lp~~~~~l~~L~~L~L~~ 83 (222)
.+++|+|++|.|+.++ ..|..+++|++|+|++|.|+.+++ .|..+++|++|++++|+|+.+|.. .+++|++|+|++
T Consensus 53 ~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~lp~~--~l~~L~~L~Ls~ 130 (562)
T 3a79_B 53 RTKALSLSQNSISELRMPDISFLSELRVLRLSHNRIRSLDFHVFLFNQDLEYLDVSHNRLQNISCC--PMASLRHLDLSF 130 (562)
T ss_dssp TCCEEECCSSCCCCCCGGGTTTCTTCCEEECCSCCCCEECTTTTTTCTTCCEEECTTSCCCEECSC--CCTTCSEEECCS
T ss_pred CcCEEECCCCCccccChhhhccCCCccEEECCCCCCCcCCHHHhCCCCCCCEEECCCCcCCccCcc--ccccCCEEECCC
Confidence 4678888888888776 478888888888888888888744 488888888888888888888765 788888888888
Q ss_pred CccCCCcchHhhcCCCCCCEEEeeCCCCCCc
Q 027557 84 NLITRWSELKVLKSLVSLNNLNLQGNPVAEY 114 (222)
Q Consensus 84 N~i~~~~~~~~~~~l~~L~~L~l~~N~l~~~ 114 (222)
|.|.+++....++.+++|++|++++|.+...
T Consensus 131 N~l~~l~~p~~~~~l~~L~~L~L~~n~l~~~ 161 (562)
T 3a79_B 131 NDFDVLPVCKEFGNLTKLTFLGLSAAKFRQL 161 (562)
T ss_dssp SCCSBCCCCGGGGGCTTCCEEEEECSBCCTT
T ss_pred CCccccCchHhhcccCcccEEecCCCccccC
Confidence 8888865214788888888888888888763
No 90
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=99.56 E-value=1e-14 Score=125.96 Aligned_cols=120 Identities=22% Similarity=0.235 Sum_probs=95.4
Q ss_pred CCccEEEeecCCCccch-hhhcCCCCCcEEEcccCCCccc-cccccCCccCCEEecccCcCCcCchhhhCCCCCceeecc
Q 027557 5 IRDCPAVLSRNPIREIG-DSLLNMKAITKLSLSNCQVQII-GSSLKSCTELKELRLAHNDIKTLPAELAFNKKLQNLDLG 82 (222)
Q Consensus 5 ~~~~~L~L~~n~l~~lp-~~~~~l~~L~~L~L~~n~i~~l-p~~~~~l~~L~~L~l~~N~i~~lp~~~~~l~~L~~L~L~ 82 (222)
-.+++|+|++|.|+.++ ..|..+++|++|+|++|.|+.+ |..|..+++|++|++++|+|+.+|.. .+++|++|+|+
T Consensus 21 ~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~lp~~--~l~~L~~L~L~ 98 (520)
T 2z7x_B 21 QKTTILNISQNYISELWTSDILSLSKLRILIISHNRIQYLDISVFKFNQELEYLDLSHNKLVKISCH--PTVNLKHLDLS 98 (520)
T ss_dssp TTCSEEECCSSCCCCCCHHHHTTCTTCCEEECCSSCCCEEEGGGGTTCTTCCEEECCSSCCCEEECC--CCCCCSEEECC
T ss_pred ccccEEECCCCcccccChhhccccccccEEecCCCccCCcChHHhhcccCCCEEecCCCceeecCcc--ccCCccEEecc
Confidence 35688999999998875 5788899999999999999886 44588899999999999999988766 78899999999
Q ss_pred CCccCCCcchHhhcCCCCCCEEEeeCCCCCCchhHHHHHHHhCCcc--cccc
Q 027557 83 KNLITRWSELKVLKSLVSLNNLNLQGNPVAEYDKLAKKVKNLLPSL--HIFN 132 (222)
Q Consensus 83 ~N~i~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L--~~l~ 132 (222)
+|.|.+++....++.+++|++|++++|.+.... +..+++| +.++
T Consensus 99 ~N~l~~~~~p~~~~~l~~L~~L~L~~n~l~~~~------~~~l~~L~L~~L~ 144 (520)
T 2z7x_B 99 FNAFDALPICKEFGNMSQLKFLGLSTTHLEKSS------VLPIAHLNISKVL 144 (520)
T ss_dssp SSCCSSCCCCGGGGGCTTCCEEEEEESSCCGGG------GGGGTTSCEEEEE
T ss_pred CCccccccchhhhccCCcceEEEecCcccchhh------ccccccceeeEEE
Confidence 999987431137888999999999999887632 2355565 5553
No 91
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=99.56 E-value=4.2e-15 Score=132.34 Aligned_cols=108 Identities=21% Similarity=0.285 Sum_probs=59.4
Q ss_pred CccEEEeecCCCccchh-hhcCCCCCcEEEcccCCCcccccc-ccCCccCCEEecccCcCCcCchh-hhCCCCCceeecc
Q 027557 6 RDCPAVLSRNPIREIGD-SLLNMKAITKLSLSNCQVQIIGSS-LKSCTELKELRLAHNDIKTLPAE-LAFNKKLQNLDLG 82 (222)
Q Consensus 6 ~~~~L~L~~n~l~~lp~-~~~~l~~L~~L~L~~n~i~~lp~~-~~~l~~L~~L~l~~N~i~~lp~~-~~~l~~L~~L~L~ 82 (222)
++++|+|++|.|+.+|+ .|..+++|++|+|++|.|+.+++. +..+++|++|++++|.++.+|.. |..+++|++|+++
T Consensus 26 ~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~L~ 105 (680)
T 1ziw_A 26 NITVLNLTHNQLRRLPAANFTRYSQLTSLDVGFNTISKLEPELCQKLPMLKVLNLQHNELSQLSDKTFAFCTNLTELHLM 105 (680)
T ss_dssp TCSEEECCSSCCCCCCGGGGGGGTTCSEEECCSSCCCCCCTTHHHHCTTCCEEECCSSCCCCCCTTTTTTCTTCSEEECC
T ss_pred CCcEEECCCCCCCCcCHHHHhCCCcCcEEECCCCccCccCHHHHhcccCcCEEECCCCccCccChhhhccCCCCCEEECC
Confidence 34566666666665543 455566666666666665554322 55555566666655555555442 5555555555555
Q ss_pred CCccCCCcchHhhcCCCCCCEEEeeCCCCCCc
Q 027557 83 KNLITRWSELKVLKSLVSLNNLNLQGNPVAEY 114 (222)
Q Consensus 83 ~N~i~~~~~~~~~~~l~~L~~L~l~~N~l~~~ 114 (222)
+|.|..+++ ..++.+++|++|++++|.+...
T Consensus 106 ~n~l~~~~~-~~~~~l~~L~~L~Ls~n~l~~~ 136 (680)
T 1ziw_A 106 SNSIQKIKN-NPFVKQKNLITLDLSHNGLSST 136 (680)
T ss_dssp SSCCCCCCS-CTTTTCTTCCEEECCSSCCSCC
T ss_pred CCccCccCh-hHccccCCCCEEECCCCccccc
Confidence 555555543 3455555555555555554443
No 92
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=99.56 E-value=4.1e-15 Score=121.58 Aligned_cols=108 Identities=24% Similarity=0.326 Sum_probs=79.5
Q ss_pred CCccEEEeecCCCccchhhhcCCCCCcEEEcccCCCccccc-cccCCccCCEEecccCcCCcCch-hhhCCCCCceeecc
Q 027557 5 IRDCPAVLSRNPIREIGDSLLNMKAITKLSLSNCQVQIIGS-SLKSCTELKELRLAHNDIKTLPA-ELAFNKKLQNLDLG 82 (222)
Q Consensus 5 ~~~~~L~L~~n~l~~lp~~~~~l~~L~~L~L~~n~i~~lp~-~~~~l~~L~~L~l~~N~i~~lp~-~~~~l~~L~~L~L~ 82 (222)
+.+++|++++|.++.+|..+. ++|+.|++++|.|+.++. .+..+++|++|++++|+++.++. .+..+++|+.|+|+
T Consensus 172 l~L~~L~l~~n~l~~l~~~~~--~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~ 249 (332)
T 2ft3_A 172 LKLNYLRISEAKLTGIPKDLP--ETLNELHLDHNKIQAIELEDLLRYSKLYRLGLGHNQIRMIENGSLSFLPTLRELHLD 249 (332)
T ss_dssp CCCSCCBCCSSBCSSCCSSSC--SSCSCCBCCSSCCCCCCTTSSTTCTTCSCCBCCSSCCCCCCTTGGGGCTTCCEEECC
T ss_pred CccCEEECcCCCCCccCcccc--CCCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCCcCChhHhhCCCCCCEEECC
Confidence 366777888888877766443 677778888888777653 47777788888888887776644 47777788888888
Q ss_pred CCccCCCcchHhhcCCCCCCEEEeeCCCCCCchh
Q 027557 83 KNLITRWSELKVLKSLVSLNNLNLQGNPVAEYDK 116 (222)
Q Consensus 83 ~N~i~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~ 116 (222)
+|.|..+|. .+..+++|+.|++++|+++.++.
T Consensus 250 ~N~l~~lp~--~l~~l~~L~~L~l~~N~l~~~~~ 281 (332)
T 2ft3_A 250 NNKLSRVPA--GLPDLKLLQVVYLHTNNITKVGV 281 (332)
T ss_dssp SSCCCBCCT--TGGGCTTCCEEECCSSCCCBCCT
T ss_pred CCcCeecCh--hhhcCccCCEEECCCCCCCccCh
Confidence 888777776 57777788888888887776653
No 93
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=99.56 E-value=1.4e-14 Score=127.17 Aligned_cols=109 Identities=19% Similarity=0.222 Sum_probs=97.7
Q ss_pred CccEEEeecCCCccch-hhhcCCCCCcEEEcccCCCccc-cccccCCccCCEEecccCcCCcCc-hhhhCCCCCceeecc
Q 027557 6 RDCPAVLSRNPIREIG-DSLLNMKAITKLSLSNCQVQII-GSSLKSCTELKELRLAHNDIKTLP-AELAFNKKLQNLDLG 82 (222)
Q Consensus 6 ~~~~L~L~~n~l~~lp-~~~~~l~~L~~L~L~~n~i~~l-p~~~~~l~~L~~L~l~~N~i~~lp-~~~~~l~~L~~L~L~ 82 (222)
.+++|+|++|.|+.++ ..|.++++|++|+|++|.|+.+ |..|..+++|++|++++|.++.++ ..++.+++|++|+++
T Consensus 57 ~L~~L~Ls~n~l~~i~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~ 136 (606)
T 3vq2_A 57 ELQWLDLSRCEIETIEDKAWHGLHHLSNLILTGNPIQSFSPGSFSGLTSLENLVAVETKLASLESFPIGQLITLKKLNVA 136 (606)
T ss_dssp TCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCCCCTTSSTTCTTCCEEECTTSCCCCSSSSCCTTCTTCCEEECC
T ss_pred cCcEEeCCCCcccccCHHHhhchhhcCEeECCCCcccccChhhcCCcccCCEEEccCCccccccccccCCCCCCCEEeCC
Confidence 4689999999999884 5789999999999999999997 556999999999999999999886 569999999999999
Q ss_pred CCccCC--CcchHhhcCCCCCCEEEeeCCCCCCchh
Q 027557 83 KNLITR--WSELKVLKSLVSLNNLNLQGNPVAEYDK 116 (222)
Q Consensus 83 ~N~i~~--~~~~~~~~~l~~L~~L~l~~N~l~~~~~ 116 (222)
+|.+.+ +|. .++.+++|++|++++|.+...+.
T Consensus 137 ~n~l~~~~lp~--~~~~l~~L~~L~Ls~n~l~~~~~ 170 (606)
T 3vq2_A 137 HNFIHSCKLPA--YFSNLTNLVHVDLSYNYIQTITV 170 (606)
T ss_dssp SSCCCCCCCCG--GGGTCTTCCEEECCSSCCCEECT
T ss_pred CCcccceechH--hHhhcCCCCEEEccCCcceecCh
Confidence 999986 454 89999999999999999988754
No 94
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=99.55 E-value=1.9e-14 Score=128.14 Aligned_cols=107 Identities=29% Similarity=0.354 Sum_probs=51.3
Q ss_pred cEEEeecCCCccchh-hhcCCCCCcEEEcccCCCccccc---------cccCCccCCEEecccCcCCcCchh-hhCCCCC
Q 027557 8 CPAVLSRNPIREIGD-SLLNMKAITKLSLSNCQVQIIGS---------SLKSCTELKELRLAHNDIKTLPAE-LAFNKKL 76 (222)
Q Consensus 8 ~~L~L~~n~l~~lp~-~~~~l~~L~~L~L~~n~i~~lp~---------~~~~l~~L~~L~l~~N~i~~lp~~-~~~l~~L 76 (222)
++|+|++|.|+.+|+ .|..+++|++|+|++|.++.++. .+..+++|++|++++|+++.+|.. |..+++|
T Consensus 483 ~~L~Ls~N~l~~i~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~N~l~~i~~~~~~~l~~L 562 (680)
T 1ziw_A 483 TILDLSNNNIANINDDMLEGLEKLEILDLQHNNLARLWKHANPGGPIYFLKGLSHLHILNLESNGFDEIPVEVFKDLFEL 562 (680)
T ss_dssp CEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCGGGGSTTSTTSCCCTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTC
T ss_pred CEEECCCCCCCcCChhhhccccccCEEeCCCCCccccchhhccCCcchhhcCCCCCCEEECCCCCCCCCCHHHcccccCc
Confidence 445555555554432 34445555555555555444321 134445555555555555544432 4445555
Q ss_pred ceeeccCCccCCCcchHhhcCCCCCCEEEeeCCCCCCch
Q 027557 77 QNLDLGKNLITRWSELKVLKSLVSLNNLNLQGNPVAEYD 115 (222)
Q Consensus 77 ~~L~L~~N~i~~~~~~~~~~~l~~L~~L~l~~N~l~~~~ 115 (222)
+.|+|++|+|+.+++ ..|..+++|+.|++++|.++..+
T Consensus 563 ~~L~Ls~N~l~~l~~-~~~~~l~~L~~L~L~~N~l~~~~ 600 (680)
T 1ziw_A 563 KIIDLGLNNLNTLPA-SVFNNQVSLKSLNLQKNLITSVE 600 (680)
T ss_dssp CEEECCSSCCCCCCT-TTTTTCTTCCEEECTTSCCCBCC
T ss_pred ceeECCCCCCCcCCH-hHhCCCCCCCEEECCCCcCCccC
Confidence 555555555555444 33444555555555555555444
No 95
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.55 E-value=4.8e-15 Score=127.50 Aligned_cols=122 Identities=16% Similarity=0.138 Sum_probs=92.6
Q ss_pred CccEEEeecCCCccc-hhhhc-CCCCCcEEEcccCCCccccccccCCccCCEEecccCcCCcCchhhhCCCCCceeeccC
Q 027557 6 RDCPAVLSRNPIREI-GDSLL-NMKAITKLSLSNCQVQIIGSSLKSCTELKELRLAHNDIKTLPAELAFNKKLQNLDLGK 83 (222)
Q Consensus 6 ~~~~L~L~~n~l~~l-p~~~~-~l~~L~~L~L~~n~i~~lp~~~~~l~~L~~L~l~~N~i~~lp~~~~~l~~L~~L~L~~ 83 (222)
.+++|+|++|.|+.+ |..+. .+++|++|+|++|.|+.+| .+..+++|++|+|++|.|+.+|..+..+++|+.|+|++
T Consensus 145 ~L~~L~Ls~N~l~~~~~~~l~~~l~~L~~L~Ls~N~l~~~~-~~~~l~~L~~L~Ls~N~l~~~~~~~~~l~~L~~L~Ls~ 223 (487)
T 3oja_A 145 RVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIYDVK-GQVVFAKLKTLDLSSNKLAFMGPEFQSAAGVTWISLRN 223 (487)
T ss_dssp SEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTSCCCEEE-CCCCCTTCCEEECCSSCCCEECGGGGGGTTCSEEECTT
T ss_pred CCCEEECCCCCCCCcChHHHhhhCCcccEEecCCCcccccc-ccccCCCCCEEECCCCCCCCCCHhHcCCCCccEEEecC
Confidence 457888888888864 45554 6888888888888888886 34568888888888888888877788888888888888
Q ss_pred CccCCCcchHhhcCCCCCCEEEeeCCCCCCchhHHHHHHHhCCcccccc
Q 027557 84 NLITRWSELKVLKSLVSLNNLNLQGNPVAEYDKLAKKVKNLLPSLHIFN 132 (222)
Q Consensus 84 N~i~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~l~ 132 (222)
|.|.++|. .+..+++|+.|++++|++.|.+ ....+..++.++.++
T Consensus 224 N~l~~lp~--~l~~l~~L~~L~l~~N~l~c~~--~~~~~~~l~~L~~l~ 268 (487)
T 3oja_A 224 NKLVLIEK--ALRFSQNLEHFDLRGNGFHCGT--LRDFFSKNQRVQTVA 268 (487)
T ss_dssp SCCCEECT--TCCCCTTCCEEECTTCCBCHHH--HHHHHTTCHHHHHHH
T ss_pred CcCcccch--hhccCCCCCEEEcCCCCCcCcc--hHHHHHhCCCCcEEe
Confidence 88888876 6788888888888888887432 112334566665543
No 96
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=99.55 E-value=1.1e-14 Score=127.28 Aligned_cols=100 Identities=19% Similarity=0.234 Sum_probs=91.2
Q ss_pred CccEEEeecCCCccchhhhcCCCCCcEEEcccCCCccccccccCCccCCEEecccCcCCcC--chhhhCCCCCceeeccC
Q 027557 6 RDCPAVLSRNPIREIGDSLLNMKAITKLSLSNCQVQIIGSSLKSCTELKELRLAHNDIKTL--PAELAFNKKLQNLDLGK 83 (222)
Q Consensus 6 ~~~~L~L~~n~l~~lp~~~~~l~~L~~L~L~~n~i~~lp~~~~~l~~L~~L~l~~N~i~~l--p~~~~~l~~L~~L~L~~ 83 (222)
.+++|+|++|.|+.+|..+..+++|+.|+|++|.|+.+| .+..+++|++|+|++|+|+.+ |..+..+++|+.|+|++
T Consensus 464 ~L~~L~Ls~N~l~~lp~~~~~l~~L~~L~Ls~N~l~~lp-~l~~l~~L~~L~Ls~N~l~~~~~p~~l~~l~~L~~L~L~~ 542 (567)
T 1dce_A 464 LVTHLDLSHNRLRALPPALAALRCLEVLQASDNALENVD-GVANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQG 542 (567)
T ss_dssp TCCEEECCSSCCCCCCGGGGGCTTCCEEECCSSCCCCCG-GGTTCSSCCEEECCSSCCCSSSTTGGGGGCTTCCEEECTT
T ss_pred cCcEeecCcccccccchhhhcCCCCCEEECCCCCCCCCc-ccCCCCCCcEEECCCCCCCCCCCcHHHhcCCCCCEEEecC
Confidence 468999999999999999999999999999999999999 899999999999999999988 88899999999999999
Q ss_pred CccCCCcch--HhhcCCCCCCEEEe
Q 027557 84 NLITRWSEL--KVLKSLVSLNNLNL 106 (222)
Q Consensus 84 N~i~~~~~~--~~~~~l~~L~~L~l 106 (222)
|.|+++++. ..+..+++|+.|++
T Consensus 543 N~l~~~~~~~~~l~~~lp~L~~L~l 567 (567)
T 1dce_A 543 NSLCQEEGIQERLAEMLPSVSSILT 567 (567)
T ss_dssp SGGGGSSSCTTHHHHHCTTCSEEEC
T ss_pred CcCCCCccHHHHHHHHCcccCccCC
Confidence 999998752 23456899999864
No 97
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=99.55 E-value=9.1e-15 Score=128.46 Aligned_cols=108 Identities=22% Similarity=0.225 Sum_probs=72.4
Q ss_pred CccEEEeecCCCccc-hhhhcCCCCCcEEEcccCCCccc-cccccCCccCCEEecccCcCCcC-chhhhCCCCCceeecc
Q 027557 6 RDCPAVLSRNPIREI-GDSLLNMKAITKLSLSNCQVQII-GSSLKSCTELKELRLAHNDIKTL-PAELAFNKKLQNLDLG 82 (222)
Q Consensus 6 ~~~~L~L~~n~l~~l-p~~~~~l~~L~~L~L~~n~i~~l-p~~~~~l~~L~~L~l~~N~i~~l-p~~~~~l~~L~~L~L~ 82 (222)
.+++|+|++|.|+.+ |..|..+++|++|+|++|.|+.+ |..|..+++|++|++++|+++.+ |..+..+++|++|+++
T Consensus 34 ~l~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~ 113 (606)
T 3t6q_A 34 STECLEFSFNVLPTIQNTTFSRLINLTFLDLTRCQIYWIHEDTFQSQHRLDTLVLTANPLIFMAETALSGPKALKHLFFI 113 (606)
T ss_dssp TCCEEECTTCCCSEECTTTSTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCSEECTTTTSSCTTCCEEECT
T ss_pred cCcEEEccCCccCcCChhHhccCccceEEECCCCccceeChhhccCccccCeeeCCCCcccccChhhhcccccccEeecc
Confidence 356777777777766 34667777777777777777775 33477777777777777777654 4456677777777777
Q ss_pred CCccCCCcchHhhcCCCCCCEEEeeCCCCCCc
Q 027557 83 KNLITRWSELKVLKSLVSLNNLNLQGNPVAEY 114 (222)
Q Consensus 83 ~N~i~~~~~~~~~~~l~~L~~L~l~~N~l~~~ 114 (222)
+|.|..+++ ..++.+++|++|++++|.+..+
T Consensus 114 ~n~i~~l~~-~~~~~l~~L~~L~L~~n~l~~~ 144 (606)
T 3t6q_A 114 QTGISSIDF-IPLHNQKTLESLYLGSNHISSI 144 (606)
T ss_dssp TSCCSCGGG-SCCTTCTTCCEEECCSSCCCCC
T ss_pred ccCcccCCc-chhccCCcccEEECCCCccccc
Confidence 777766543 3466666666666666666554
No 98
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=99.55 E-value=2.2e-14 Score=125.15 Aligned_cols=122 Identities=22% Similarity=0.192 Sum_probs=90.8
Q ss_pred CccEEEeecCCCccch---hhhcCCCCCcEEEcccCCCcc-cccc-ccCCccCCEEecccCcCC-cCchhhhCCCCCcee
Q 027557 6 RDCPAVLSRNPIREIG---DSLLNMKAITKLSLSNCQVQI-IGSS-LKSCTELKELRLAHNDIK-TLPAELAFNKKLQNL 79 (222)
Q Consensus 6 ~~~~L~L~~n~l~~lp---~~~~~l~~L~~L~L~~n~i~~-lp~~-~~~l~~L~~L~l~~N~i~-~lp~~~~~l~~L~~L 79 (222)
.+++|+|++|.|+.++ ..+..+++|++|++++|.++. +|.. +..+++|++|++++|+++ .+|..+. ++|+.|
T Consensus 378 ~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~--~~L~~L 455 (562)
T 3a79_B 378 RLQTLILQRNGLKNFFKVALMTKNMSSLETLDVSLNSLNSHAYDRTCAWAESILVLNLSSNMLTGSVFRCLP--PKVKVL 455 (562)
T ss_dssp SCCEEECCSSCCCBTTHHHHTTTTCTTCCEEECTTSCCBSCCSSCCCCCCTTCCEEECCSSCCCGGGGSSCC--TTCSEE
T ss_pred CCCEEECCCCCcCCcccchhhhcCCCCCCEEECCCCcCCCccChhhhcCcccCCEEECCCCCCCcchhhhhc--CcCCEE
Confidence 4689999999999664 467889999999999999988 8866 777888888888888876 3333222 578888
Q ss_pred eccCCccCCCcchHhhcCCCCCCEEEeeCCCCCCchhHHHHHHHhCCccccccCC
Q 027557 80 DLGKNLITRWSELKVLKSLVSLNNLNLQGNPVAEYDKLAKKVKNLLPSLHIFNAR 134 (222)
Q Consensus 80 ~L~~N~i~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~l~~~ 134 (222)
+|++|+|+.+|. .+..+++|+.|++++|.++.++.. .+..+++|+.++..
T Consensus 456 ~L~~N~l~~ip~--~~~~l~~L~~L~L~~N~l~~l~~~---~~~~l~~L~~L~l~ 505 (562)
T 3a79_B 456 DLHNNRIMSIPK--DVTHLQALQELNVASNQLKSVPDG---VFDRLTSLQYIWLH 505 (562)
T ss_dssp ECCSSCCCCCCT--TTTSSCCCSEEECCSSCCCCCCTT---STTTCTTCCCEECC
T ss_pred ECCCCcCcccCh--hhcCCCCCCEEECCCCCCCCCCHH---HHhcCCCCCEEEec
Confidence 888888887776 455778888888888888777653 23466777765443
No 99
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=99.55 E-value=6.1e-14 Score=115.01 Aligned_cols=103 Identities=27% Similarity=0.337 Sum_probs=46.5
Q ss_pred cEEEeecCCCccchhhhcCCCCCcEEEcccCCCccccccccCCccCCEEecccCcCCcCchhhhCCCCCceeeccCCccC
Q 027557 8 CPAVLSRNPIREIGDSLLNMKAITKLSLSNCQVQIIGSSLKSCTELKELRLAHNDIKTLPAELAFNKKLQNLDLGKNLIT 87 (222)
Q Consensus 8 ~~L~L~~n~l~~lp~~~~~l~~L~~L~L~~n~i~~lp~~~~~l~~L~~L~l~~N~i~~lp~~~~~l~~L~~L~L~~N~i~ 87 (222)
++|++++|.++.++. +..+++|++|++++|.++.+| .+..+++|++|++++|.++.++. +..+++|+.|++++|...
T Consensus 69 ~~L~l~~n~i~~~~~-~~~l~~L~~L~L~~n~i~~~~-~~~~l~~L~~L~l~~n~i~~~~~-~~~l~~L~~L~l~~n~~~ 145 (347)
T 4fmz_A 69 EYLNLNGNQITDISP-LSNLVKLTNLYIGTNKITDIS-ALQNLTNLRELYLNEDNISDISP-LANLTKMYSLNLGANHNL 145 (347)
T ss_dssp CEEECCSSCCCCCGG-GTTCTTCCEEECCSSCCCCCG-GGTTCTTCSEEECTTSCCCCCGG-GTTCTTCCEEECTTCTTC
T ss_pred cEEEccCCccccchh-hhcCCcCCEEEccCCcccCch-HHcCCCcCCEEECcCCcccCchh-hccCCceeEEECCCCCCc
Confidence 444555555444433 444455555555555544443 34444555555555555444432 444444444444444222
Q ss_pred CCcchHhhcCCCCCCEEEeeCCCCCCch
Q 027557 88 RWSELKVLKSLVSLNNLNLQGNPVAEYD 115 (222)
Q Consensus 88 ~~~~~~~~~~l~~L~~L~l~~N~l~~~~ 115 (222)
.... .+..+++|++|++++|.+...+
T Consensus 146 ~~~~--~~~~l~~L~~L~l~~~~~~~~~ 171 (347)
T 4fmz_A 146 SDLS--PLSNMTGLNYLTVTESKVKDVT 171 (347)
T ss_dssp CCCG--GGTTCTTCCEEECCSSCCCCCG
T ss_pred cccc--chhhCCCCcEEEecCCCcCCch
Confidence 1111 2444444444444444444443
No 100
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=99.54 E-value=8.8e-15 Score=118.75 Aligned_cols=127 Identities=17% Similarity=0.111 Sum_probs=80.3
Q ss_pred CccEEEeecCCCccchhhhcCC-----CCCcEEEcccCCCcccc-ccccCCccCCEEecccCcCCc---Cchhh--hCCC
Q 027557 6 RDCPAVLSRNPIREIGDSLLNM-----KAITKLSLSNCQVQIIG-SSLKSCTELKELRLAHNDIKT---LPAEL--AFNK 74 (222)
Q Consensus 6 ~~~~L~L~~n~l~~lp~~~~~l-----~~L~~L~L~~n~i~~lp-~~~~~l~~L~~L~l~~N~i~~---lp~~~--~~l~ 74 (222)
.+++|+|++|.|+.+|..+..+ ++|++|+|++|.|+.++ ..+..+++|++|++++|++.. +|..+ ..++
T Consensus 122 ~L~~L~Ls~N~l~~~~~~~~~l~~~~~~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~ 201 (312)
T 1wwl_A 122 DLNILNLRNVSWATRDAWLAELQQWLKPGLKVLSIAQAHSLNFSCEQVRVFPALSTLDLSDNPELGERGLISALCPLKFP 201 (312)
T ss_dssp CCSEEEEESCBCSSSSSHHHHHHTTCCTTCCEEEEESCSCCCCCTTTCCCCSSCCEEECCSCTTCHHHHHHHHSCTTSCT
T ss_pred CccEEEccCCCCcchhHHHHHHHHhhcCCCcEEEeeCCCCccchHHHhccCCCCCEEECCCCCcCcchHHHHHHHhccCC
Confidence 3567777777777666555554 77777777777777766 347777777777777777652 23343 6677
Q ss_pred CCceeeccCCccCCCcch--HhhcCCCCCCEEEeeCCCCCCchhHHHHHHHhCCccccccCC
Q 027557 75 KLQNLDLGKNLITRWSEL--KVLKSLVSLNNLNLQGNPVAEYDKLAKKVKNLLPSLHIFNAR 134 (222)
Q Consensus 75 ~L~~L~L~~N~i~~~~~~--~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~l~~~ 134 (222)
+|++|+|++|.|+.++.+ ..+..+++|+.|++++|.+....+.. ....+++|+.|+..
T Consensus 202 ~L~~L~L~~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~--~~~~l~~L~~L~Ls 261 (312)
T 1wwl_A 202 TLQVLALRNAGMETPSGVCSALAAARVQLQGLDLSHNSLRDAAGAP--SCDWPSQLNSLNLS 261 (312)
T ss_dssp TCCEEECTTSCCCCHHHHHHHHHHTTCCCSEEECTTSCCCSSCCCS--CCCCCTTCCEEECT
T ss_pred CCCEEECCCCcCcchHHHHHHHHhcCCCCCEEECCCCcCCcccchh--hhhhcCCCCEEECC
Confidence 777777777777755432 23456677777777777776643100 11235666666554
No 101
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=99.54 E-value=6.2e-15 Score=119.49 Aligned_cols=120 Identities=19% Similarity=0.190 Sum_probs=98.3
Q ss_pred CccEEEeecCCCcc---chhh--hcCCCCCcEEEcccCCCcccccc----ccCCccCCEEecccCcCCcC-chhhhCC--
Q 027557 6 RDCPAVLSRNPIRE---IGDS--LLNMKAITKLSLSNCQVQIIGSS----LKSCTELKELRLAHNDIKTL-PAELAFN-- 73 (222)
Q Consensus 6 ~~~~L~L~~n~l~~---lp~~--~~~l~~L~~L~L~~n~i~~lp~~----~~~l~~L~~L~l~~N~i~~l-p~~~~~l-- 73 (222)
.+++|+|++|.+.. ++.. +..+++|++|+|++|.|+.++.. +..+++|++|+|++|+|+.+ |..+..+
T Consensus 170 ~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~l~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~ 249 (310)
T 4glp_A 170 ALTSLDLSDNPGLGERGLMAALCPHKFPAIQNLALRNTGMETPTGVCAALAAAGVQPHSLDLSHNSLRATVNPSAPRCMW 249 (310)
T ss_dssp TCCEEECCSCTTCHHHHHHTTSCTTSSCCCCSCBCCSSCCCCHHHHHHHHHHHTCCCSSEECTTSCCCCCCCSCCSSCCC
T ss_pred CCCEEECCCCCCccchhhhHHHhhhcCCCCCEEECCCCCCCchHHHHHHHHhcCCCCCEEECCCCCCCccchhhHHhccC
Confidence 46899999999864 4332 36899999999999999887653 46789999999999999976 7666666
Q ss_pred -CCCceeeccCCccCCCcchHhhcCCCCCCEEEeeCCCCCCchhHHHHHHHhCCccccccCC
Q 027557 74 -KKLQNLDLGKNLITRWSELKVLKSLVSLNNLNLQGNPVAEYDKLAKKVKNLLPSLHIFNAR 134 (222)
Q Consensus 74 -~~L~~L~L~~N~i~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~l~~~ 134 (222)
++|++|+|++|+|+.+|. .+ .++|+.|++++|.++.++. ...+++|+.|+..
T Consensus 250 ~~~L~~L~Ls~N~l~~lp~--~~--~~~L~~L~Ls~N~l~~~~~-----~~~l~~L~~L~L~ 302 (310)
T 4glp_A 250 SSALNSLNLSFAGLEQVPK--GL--PAKLRVLDLSSNRLNRAPQ-----PDELPEVDNLTLD 302 (310)
T ss_dssp CTTCCCEECCSSCCCSCCS--CC--CSCCSCEECCSCCCCSCCC-----TTSCCCCSCEECS
T ss_pred cCcCCEEECCCCCCCchhh--hh--cCCCCEEECCCCcCCCCch-----hhhCCCccEEECc
Confidence 699999999999999886 44 3899999999999998764 2478888887654
No 102
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=99.54 E-value=2.8e-14 Score=116.66 Aligned_cols=105 Identities=23% Similarity=0.400 Sum_probs=84.9
Q ss_pred CccEEEeecCCCccch-hhhcCCCCCcEEEcccCCCccc-cccccCCccCCEEecccCcCCcCchhhhCCCCCceeeccC
Q 027557 6 RDCPAVLSRNPIREIG-DSLLNMKAITKLSLSNCQVQII-GSSLKSCTELKELRLAHNDIKTLPAELAFNKKLQNLDLGK 83 (222)
Q Consensus 6 ~~~~L~L~~n~l~~lp-~~~~~l~~L~~L~L~~n~i~~l-p~~~~~l~~L~~L~l~~N~i~~lp~~~~~l~~L~~L~L~~ 83 (222)
.+++|+|++|.|+.++ ..|..+++|++|+|++|.|+.+ |..+..+++|++|++++|.++.+|..+. ++|++|++++
T Consensus 55 ~l~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~--~~L~~L~l~~ 132 (332)
T 2ft3_A 55 DTTLLDLQNNDISELRKDDFKGLQHLYALVLVNNKISKIHEKAFSPLRKLQKLYISKNHLVEIPPNLP--SSLVELRIHD 132 (332)
T ss_dssp TCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECGGGSTTCTTCCEEECCSSCCCSCCSSCC--TTCCEEECCS
T ss_pred CCeEEECCCCcCCccCHhHhhCCCCCcEEECCCCccCccCHhHhhCcCCCCEEECCCCcCCccCcccc--ccCCEEECCC
Confidence 4678888888888775 4788888888888888888886 4458888888888888888888876554 7888888888
Q ss_pred CccCCCcchHhhcCCCCCCEEEeeCCCCCC
Q 027557 84 NLITRWSELKVLKSLVSLNNLNLQGNPVAE 113 (222)
Q Consensus 84 N~i~~~~~~~~~~~l~~L~~L~l~~N~l~~ 113 (222)
|.|..++. ..+..+++|+.|++++|.+..
T Consensus 133 n~i~~~~~-~~~~~l~~L~~L~l~~n~l~~ 161 (332)
T 2ft3_A 133 NRIRKVPK-GVFSGLRNMNCIEMGGNPLEN 161 (332)
T ss_dssp SCCCCCCS-GGGSSCSSCCEEECCSCCCBG
T ss_pred CccCccCH-hHhCCCccCCEEECCCCcccc
Confidence 88888776 567888888888888888753
No 103
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=99.53 E-value=2.9e-14 Score=121.69 Aligned_cols=113 Identities=19% Similarity=0.217 Sum_probs=89.3
Q ss_pred CccEEEeecCCCccchhhhcCCCCCcEEEcccCCCccccccccCCccCCEEecccCcCCcCchhhhCCCCCceeeccCCc
Q 027557 6 RDCPAVLSRNPIREIGDSLLNMKAITKLSLSNCQVQIIGSSLKSCTELKELRLAHNDIKTLPAELAFNKKLQNLDLGKNL 85 (222)
Q Consensus 6 ~~~~L~L~~n~l~~lp~~~~~l~~L~~L~L~~n~i~~lp~~~~~l~~L~~L~l~~N~i~~lp~~~~~l~~L~~L~L~~N~ 85 (222)
.+++|+|++|.|+.+| .+..+++|++|+|++|.|+.+| +..+++|++|++++|.++.+| +..+++|++|++++|.
T Consensus 43 ~L~~L~Ls~n~l~~~~-~l~~l~~L~~L~Ls~n~l~~~~--~~~l~~L~~L~Ls~N~l~~~~--~~~l~~L~~L~L~~N~ 117 (457)
T 3bz5_A 43 TLTSLDCHNSSITDMT-GIEKLTGLTKLICTSNNITTLD--LSQNTNLTYLACDSNKLTNLD--VTPLTKLTYLNCDTNK 117 (457)
T ss_dssp TCCEEECCSSCCCCCT-TGGGCTTCSEEECCSSCCSCCC--CTTCTTCSEEECCSSCCSCCC--CTTCTTCCEEECCSSC
T ss_pred CCCEEEccCCCcccCh-hhcccCCCCEEEccCCcCCeEc--cccCCCCCEEECcCCCCceee--cCCCCcCCEEECCCCc
Confidence 3578899999988886 6788888999999999888886 788888888888888888874 7788888888888888
Q ss_pred cCCCcchHhhcCCCCCCEEEeeCCCCCCchhHHHHHHHhCCccccccC
Q 027557 86 ITRWSELKVLKSLVSLNNLNLQGNPVAEYDKLAKKVKNLLPSLHIFNA 133 (222)
Q Consensus 86 i~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~l~~ 133 (222)
|.+++ ++.+++|++|++++|.+..++ +..+++|+.++.
T Consensus 118 l~~l~----~~~l~~L~~L~l~~N~l~~l~------l~~l~~L~~L~l 155 (457)
T 3bz5_A 118 LTKLD----VSQNPLLTYLNCARNTLTEID------VSHNTQLTELDC 155 (457)
T ss_dssp CSCCC----CTTCTTCCEEECTTSCCSCCC------CTTCTTCCEEEC
T ss_pred CCeec----CCCCCcCCEEECCCCccceec------cccCCcCCEEEC
Confidence 88764 677888888888888887763 134555555544
No 104
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=99.53 E-value=3.3e-14 Score=124.88 Aligned_cols=120 Identities=22% Similarity=0.175 Sum_probs=103.2
Q ss_pred CccEEEeecCCCccc-hhhhcCCCCCcEEEcccCCCccc-cccccCCccCCEEecccCcCCcC-chhhhCCCCCceeecc
Q 027557 6 RDCPAVLSRNPIREI-GDSLLNMKAITKLSLSNCQVQII-GSSLKSCTELKELRLAHNDIKTL-PAELAFNKKLQNLDLG 82 (222)
Q Consensus 6 ~~~~L~L~~n~l~~l-p~~~~~l~~L~~L~L~~n~i~~l-p~~~~~l~~L~~L~l~~N~i~~l-p~~~~~l~~L~~L~L~ 82 (222)
.+++|+|++|.|..+ |..|..+++|++|+|++|.++.+ |..+..+++|++|++++|.++.+ |..+..+++|++|+++
T Consensus 58 ~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~l~~~~~~~l~~L~~L~L~ 137 (606)
T 3t6q_A 58 NLTFLDLTRCQIYWIHEDTFQSQHRLDTLVLTANPLIFMAETALSGPKALKHLFFIQTGISSIDFIPLHNQKTLESLYLG 137 (606)
T ss_dssp TCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCSEECTTTTSSCTTCCEEECTTSCCSCGGGSCCTTCTTCCEEECC
T ss_pred cceEEECCCCccceeChhhccCccccCeeeCCCCcccccChhhhcccccccEeeccccCcccCCcchhccCCcccEEECC
Confidence 468999999999987 56899999999999999999996 44599999999999999999987 4568999999999999
Q ss_pred CCccCCCcchHhhcCCCCCCEEEeeCCCCCCchhHHHHHHHhCCccc
Q 027557 83 KNLITRWSELKVLKSLVSLNNLNLQGNPVAEYDKLAKKVKNLLPSLH 129 (222)
Q Consensus 83 ~N~i~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~ 129 (222)
+|.|.+++. ..+..+++|++|++++|.+...+.. .+..+++|+
T Consensus 138 ~n~l~~~~~-~~~~~l~~L~~L~L~~n~l~~~~~~---~~~~l~~L~ 180 (606)
T 3t6q_A 138 SNHISSIKL-PKGFPTEKLKVLDFQNNAIHYLSKE---DMSSLQQAT 180 (606)
T ss_dssp SSCCCCCCC-CTTCCCTTCCEEECCSSCCCEECHH---HHHTTTTCC
T ss_pred CCcccccCc-ccccCCcccCEEEcccCcccccChh---hhhhhcccc
Confidence 999998753 3466699999999999999987543 345777777
No 105
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=99.53 E-value=4.8e-14 Score=128.55 Aligned_cols=123 Identities=19% Similarity=0.210 Sum_probs=82.5
Q ss_pred CccEEEeecCCCccchhhh-cCCCCCcEEEcccCCCccccccccCC--------ccCCEEecccCcCCcCchhhh--CCC
Q 027557 6 RDCPAVLSRNPIREIGDSL-LNMKAITKLSLSNCQVQIIGSSLKSC--------TELKELRLAHNDIKTLPAELA--FNK 74 (222)
Q Consensus 6 ~~~~L~L~~n~l~~lp~~~-~~l~~L~~L~L~~n~i~~lp~~~~~l--------~~L~~L~l~~N~i~~lp~~~~--~l~ 74 (222)
.++.|+|++|.|+.+|..+ ..+++|+.|+|++|.|+.+|..+... ++|+.|+|++|+|+.+|..+. .++
T Consensus 674 ~L~~L~Ls~N~L~~lp~~~~~~l~~L~~L~Ls~N~L~~ip~~~~~~~~~~l~nl~~L~~L~Ls~N~L~~lp~~l~~~~l~ 753 (876)
T 4ecn_A 674 NASTVTLSYNEIQKFPTELFATGSPISTIILSNNLMTSIPENSLKPKDGNYKNTYLLTTIDLRFNKLTSLSDDFRATTLP 753 (876)
T ss_dssp CEEEEECCSSCCCSCCHHHHHTTCCCSEEECCSCCCSCCCTTSSSCTTSCCTTGGGCCEEECCSSCCCCCCGGGSTTTCT
T ss_pred CcCEEEccCCcCCccCHHHHccCCCCCEEECCCCcCCccChHHhccccccccccCCccEEECCCCCCccchHHhhhccCC
Confidence 4667777777777777644 36777777777777777777653322 277777777777777776665 777
Q ss_pred CCceeeccCCccCCCcchHhhcCCCCCCEEEeeC------CCCC-CchhHHHHHHHhCCccccccCC
Q 027557 75 KLQNLDLGKNLITRWSELKVLKSLVSLNNLNLQG------NPVA-EYDKLAKKVKNLLPSLHIFNAR 134 (222)
Q Consensus 75 ~L~~L~L~~N~i~~~~~~~~~~~l~~L~~L~l~~------N~l~-~~~~~~~~~~~~l~~L~~l~~~ 134 (222)
+|+.|+|++|.|.++|. .+..+++|+.|++++ |.+. .+|. .+..+++|+.|+..
T Consensus 754 ~L~~L~Ls~N~L~~lp~--~l~~L~~L~~L~Ls~N~~ls~N~l~~~ip~----~l~~L~~L~~L~Ls 814 (876)
T 4ecn_A 754 YLSNMDVSYNCFSSFPT--QPLNSSQLKAFGIRHQRDAEGNRILRQWPT----GITTCPSLIQLQIG 814 (876)
T ss_dssp TCCEEECCSSCCSSCCC--GGGGCTTCCEEECCCCBCTTCCBCCCCCCT----TGGGCSSCCEEECC
T ss_pred CcCEEEeCCCCCCccch--hhhcCCCCCEEECCCCCCcccccccccChH----HHhcCCCCCEEECC
Confidence 77777777777777765 666777777777765 3333 2232 22456777766554
No 106
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=99.53 E-value=3.3e-14 Score=126.05 Aligned_cols=100 Identities=16% Similarity=0.197 Sum_probs=60.2
Q ss_pred CccEEEeecCCCccchhh-hcCCCCCcEEEcccCCCccccccc-cCC-------ccCCEEecccCcCCcCchhhh--CCC
Q 027557 6 RDCPAVLSRNPIREIGDS-LLNMKAITKLSLSNCQVQIIGSSL-KSC-------TELKELRLAHNDIKTLPAELA--FNK 74 (222)
Q Consensus 6 ~~~~L~L~~n~l~~lp~~-~~~l~~L~~L~L~~n~i~~lp~~~-~~l-------~~L~~L~l~~N~i~~lp~~~~--~l~ 74 (222)
.+++|+|++|.|+.+|.. +..+++|++|+|++|.|+.+|..+ ..+ ++|++|++++|+|+.+|..+. .++
T Consensus 434 ~L~~L~Ls~N~l~~lp~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~lp~~~~~~~l~ 513 (636)
T 4eco_A 434 NVSSINLSNNQISKFPKELFSTGSPLSSINLMGNMLTEIPKNSLKDENENFKNTYLLTSIDLRFNKLTKLSDDFRATTLP 513 (636)
T ss_dssp CEEEEECCSSCCCSCCTHHHHTTCCCSEEECCSSCCSBCCSSSSEETTEECTTGGGCCEEECCSSCCCBCCGGGSTTTCT
T ss_pred CCCEEECcCCccCcCCHHHHccCCCCCEEECCCCCCCCcCHHHhccccccccccCCccEEECcCCcCCccChhhhhccCC
Confidence 455666666666666543 334666666666666666666542 222 166666666666666665554 666
Q ss_pred CCceeeccCCccCCCcchHhhcCCCCCCEEEee
Q 027557 75 KLQNLDLGKNLITRWSELKVLKSLVSLNNLNLQ 107 (222)
Q Consensus 75 ~L~~L~L~~N~i~~~~~~~~~~~l~~L~~L~l~ 107 (222)
+|+.|+|++|+|+++|. .+..+++|+.|+++
T Consensus 514 ~L~~L~Ls~N~l~~ip~--~~~~l~~L~~L~Ls 544 (636)
T 4eco_A 514 YLVGIDLSYNSFSKFPT--QPLNSSTLKGFGIR 544 (636)
T ss_dssp TCCEEECCSSCCSSCCC--GGGGCSSCCEEECC
T ss_pred CcCEEECCCCCCCCcCh--hhhcCCCCCEEECC
Confidence 66666666666666654 55566666666663
No 107
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=99.53 E-value=9e-15 Score=133.34 Aligned_cols=109 Identities=25% Similarity=0.309 Sum_probs=65.1
Q ss_pred ccEEEeecCCCcc------------------chhhhc--CCCCCcEEEcccCCCcc-ccccccCCccCCEEecccCc-CC
Q 027557 7 DCPAVLSRNPIRE------------------IGDSLL--NMKAITKLSLSNCQVQI-IGSSLKSCTELKELRLAHND-IK 64 (222)
Q Consensus 7 ~~~L~L~~n~l~~------------------lp~~~~--~l~~L~~L~L~~n~i~~-lp~~~~~l~~L~~L~l~~N~-i~ 64 (222)
+++|+|++|.|+. +|+.+. .+++|++|+|++|.+.. +|..+..+++|++|+|++|+ ++
T Consensus 450 L~~L~Ls~N~Lsg~~i~~~~~~~s~n~~~g~iP~~l~f~~L~~L~~L~Ls~N~l~~~iP~~l~~L~~L~~L~Ls~N~~ls 529 (876)
T 4ecn_A 450 LQIIYFANSPFTYDNIAVDWEDANSDYAKQYENEELSWSNLKDLTDVELYNCPNMTQLPDFLYDLPELQSLNIACNRGIS 529 (876)
T ss_dssp CCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEESCTTCCSCCGGGGGCSSCCEEECTTCTTSC
T ss_pred CCEEECcCCcCCCCcccccccccccccccccCChhhhhccCCCCCEEECcCCCCCccChHHHhCCCCCCEEECcCCCCcc
Confidence 4566666666665 666555 66666666666666544 56556666666666666665 55
Q ss_pred c--CchhhhCCC-------CCceeeccCCccCCCcchHhhcCCCCCCEEEeeCCCCCCch
Q 027557 65 T--LPAELAFNK-------KLQNLDLGKNLITRWSELKVLKSLVSLNNLNLQGNPVAEYD 115 (222)
Q Consensus 65 ~--lp~~~~~l~-------~L~~L~L~~N~i~~~~~~~~~~~l~~L~~L~l~~N~l~~~~ 115 (222)
. +|..+..++ +|+.|+|++|.|..+|....++.+++|+.|++++|.+..+|
T Consensus 530 g~~iP~~i~~L~~~~~~l~~L~~L~Ls~N~L~~ip~~~~l~~L~~L~~L~Ls~N~l~~lp 589 (876)
T 4ecn_A 530 AAQLKADWTRLADDEDTGPKIQIFYMGYNNLEEFPASASLQKMVKLGLLDCVHNKVRHLE 589 (876)
T ss_dssp HHHHHHHHHHHHHCTTTTTTCCEEECCSSCCCBCCCHHHHTTCTTCCEEECTTSCCCBCC
T ss_pred cccchHHHHhhhhcccccCCccEEEeeCCcCCccCChhhhhcCCCCCEEECCCCCcccch
Confidence 3 555444443 66666666666665553234556666666666666655444
No 108
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=99.53 E-value=1.5e-14 Score=117.22 Aligned_cols=130 Identities=15% Similarity=0.053 Sum_probs=93.5
Q ss_pred CccEEEeecCCCcc-chhhh--cCCCCCcEEEcccCCCccc----c-ccccCCccCCEEecccCcCCcCc-hhhhCCCCC
Q 027557 6 RDCPAVLSRNPIRE-IGDSL--LNMKAITKLSLSNCQVQII----G-SSLKSCTELKELRLAHNDIKTLP-AELAFNKKL 76 (222)
Q Consensus 6 ~~~~L~L~~n~l~~-lp~~~--~~l~~L~~L~L~~n~i~~l----p-~~~~~l~~L~~L~l~~N~i~~lp-~~~~~l~~L 76 (222)
.+++|+|++|.+.. +|..+ ..+++|++|+|++|.|+.. + ..+..+++|++|++++|+++.++ ..+..+++|
T Consensus 92 ~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L 171 (310)
T 4glp_A 92 RLKELTLEDLKITGTMPPLPLEATGLALSSLRLRNVSWATGRSWLAELQQWLKPGLKVLSIAQAHSPAFSCEQVRAFPAL 171 (310)
T ss_dssp CCCEEEEESCCCBSCCCCCSSSCCCBCCSSCEEESCCCSSTTSSHHHHHTTBCSCCCEEEEECCSSCCCCTTSCCCCTTC
T ss_pred ceeEEEeeCCEeccchhhhhhhccCCCCCEEEeecccccchhhhhHHHHhhhccCCCEEEeeCCCcchhhHHHhccCCCC
Confidence 36788888888874 45555 7788888888888888762 2 12456888888888888888665 457788888
Q ss_pred ceeeccCCccCC---CcchHhhcCCCCCCEEEeeCCCCCCchhHHHHHHHhCCccccccCCC
Q 027557 77 QNLDLGKNLITR---WSELKVLKSLVSLNNLNLQGNPVAEYDKLAKKVKNLLPSLHIFNARP 135 (222)
Q Consensus 77 ~~L~L~~N~i~~---~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~l~~~~ 135 (222)
++|+|++|++.+ ++....+..+++|++|++++|.++.++.....+...+++|+.|+...
T Consensus 172 ~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~l~~~l~~L~~L~Ls~ 233 (310)
T 4glp_A 172 TSLDLSDNPGLGERGLMAALCPHKFPAIQNLALRNTGMETPTGVCAALAAAGVQPHSLDLSH 233 (310)
T ss_dssp CEEECCSCTTCHHHHHHTTSCTTSSCCCCSCBCCSSCCCCHHHHHHHHHHHTCCCSSEECTT
T ss_pred CEEECCCCCCccchhhhHHHhhhcCCCCCEEECCCCCCCchHHHHHHHHhcCCCCCEEECCC
Confidence 888888888765 22211236788888888888888776655444456778888776654
No 109
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=99.52 E-value=3.3e-14 Score=126.03 Aligned_cols=121 Identities=17% Similarity=0.286 Sum_probs=90.8
Q ss_pred CccEEEeecCCCccchhhhcC-C-------CCCcEEEcccCCCcccccccc--CCccCCEEecccCcCCcCchhhhCCCC
Q 027557 6 RDCPAVLSRNPIREIGDSLLN-M-------KAITKLSLSNCQVQIIGSSLK--SCTELKELRLAHNDIKTLPAELAFNKK 75 (222)
Q Consensus 6 ~~~~L~L~~n~l~~lp~~~~~-l-------~~L~~L~L~~n~i~~lp~~~~--~l~~L~~L~l~~N~i~~lp~~~~~l~~ 75 (222)
.+++|+|++|.|+.+|..+.. . ++|++|+|++|.|+.+|..+. .+++|++|+|++|+|+.+|..+..+++
T Consensus 458 ~L~~L~Ls~N~l~~i~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~lp~~~~~~~l~~L~~L~Ls~N~l~~ip~~~~~l~~ 537 (636)
T 4eco_A 458 PLSSINLMGNMLTEIPKNSLKDENENFKNTYLLTSIDLRFNKLTKLSDDFRATTLPYLVGIDLSYNSFSKFPTQPLNSST 537 (636)
T ss_dssp CCSEEECCSSCCSBCCSSSSEETTEECTTGGGCCEEECCSSCCCBCCGGGSTTTCTTCCEEECCSSCCSSCCCGGGGCSS
T ss_pred CCCEEECCCCCCCCcCHHHhccccccccccCCccEEECcCCcCCccChhhhhccCCCcCEEECCCCCCCCcChhhhcCCC
Confidence 467888888888888764332 2 288888888888888887776 888888888888888888888888888
Q ss_pred CceeeccC------CccC-CCcchHhhcCCCCCCEEEeeCCCCCCchhHHHHHHHhCCccccccCC
Q 027557 76 LQNLDLGK------NLIT-RWSELKVLKSLVSLNNLNLQGNPVAEYDKLAKKVKNLLPSLHIFNAR 134 (222)
Q Consensus 76 L~~L~L~~------N~i~-~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~l~~~ 134 (222)
|+.|+|++ |.+. .+|. .+..+++|+.|++++|.+..+|.. ..++|+.|+..
T Consensus 538 L~~L~Ls~N~~ls~N~l~~~~p~--~l~~l~~L~~L~Ls~N~l~~ip~~------~~~~L~~L~Ls 595 (636)
T 4eco_A 538 LKGFGIRNQRDAQGNRTLREWPE--GITLCPSLTQLQIGSNDIRKVNEK------ITPNISVLDIK 595 (636)
T ss_dssp CCEEECCSCBCTTCCBCCCCCCT--TGGGCSSCCEEECCSSCCCBCCSC------CCTTCCEEECC
T ss_pred CCEEECCCCcccccCcccccChH--HHhcCCCCCEEECCCCcCCccCHh------HhCcCCEEECc
Confidence 88888844 5444 3444 778888888888888888777653 22667766554
No 110
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=99.52 E-value=2.5e-14 Score=124.58 Aligned_cols=125 Identities=19% Similarity=0.285 Sum_probs=89.9
Q ss_pred CccEEEeecCCCccchh--hhcCCCCCcEEEcccCCCccc-cccccCCccCCEEecccCcCC--cCchhhhCCCCCceee
Q 027557 6 RDCPAVLSRNPIREIGD--SLLNMKAITKLSLSNCQVQII-GSSLKSCTELKELRLAHNDIK--TLPAELAFNKKLQNLD 80 (222)
Q Consensus 6 ~~~~L~L~~n~l~~lp~--~~~~l~~L~~L~L~~n~i~~l-p~~~~~l~~L~~L~l~~N~i~--~lp~~~~~l~~L~~L~ 80 (222)
.+++|++++|.+..+++ .+..+++|++|++++|.++.. |..+..+++|++|++++|.++ .+|..+..+++|+.|+
T Consensus 397 ~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~p~~~~~l~~L~~L~ 476 (570)
T 2z63_A 397 QLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLD 476 (570)
T ss_dssp TCCEEECTTSEEESCTTSCTTTTCTTCCEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEE
T ss_pred CCCEEEccCCccccccchhhhhcCCCCCEEeCcCCcccccchhhhhcCCcCcEEECcCCcCccccchhhhhcccCCCEEE
Confidence 45778888888776543 567788888888888887774 334777888888888888776 4676777788888888
Q ss_pred ccCCccCCCcchHhhcCCCCCCEEEeeCCCCCCchhHHHHHHHhCCccccccCC
Q 027557 81 LGKNLITRWSELKVLKSLVSLNNLNLQGNPVAEYDKLAKKVKNLLPSLHIFNAR 134 (222)
Q Consensus 81 L~~N~i~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~l~~~ 134 (222)
+++|.+.++++ ..+..+++|+.|++++|.+...+.. .+..+++|+.++..
T Consensus 477 l~~n~l~~~~~-~~~~~l~~L~~L~l~~n~l~~~~~~---~~~~l~~L~~L~l~ 526 (570)
T 2z63_A 477 LSQCQLEQLSP-TAFNSLSSLQVLNMASNQLKSVPDG---IFDRLTSLQKIWLH 526 (570)
T ss_dssp CTTSCCCEECT-TTTTTCTTCCEEECCSSCCSCCCTT---TTTTCTTCCEEECC
T ss_pred CCCCccccCCh-hhhhcccCCCEEeCCCCcCCCCCHH---HhhcccCCcEEEec
Confidence 88888877643 4677788888888888887776542 23466777766544
No 111
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=99.52 E-value=1e-13 Score=118.40 Aligned_cols=118 Identities=25% Similarity=0.300 Sum_probs=80.7
Q ss_pred CccEEEeecCCCccchhhhcCCCCCcEEEcccCCCccccccccCCccCCEEecccCcCCcCchhhhCCCCCceeeccCCc
Q 027557 6 RDCPAVLSRNPIREIGDSLLNMKAITKLSLSNCQVQIIGSSLKSCTELKELRLAHNDIKTLPAELAFNKKLQNLDLGKNL 85 (222)
Q Consensus 6 ~~~~L~L~~n~l~~lp~~~~~l~~L~~L~L~~n~i~~lp~~~~~l~~L~~L~l~~N~i~~lp~~~~~l~~L~~L~L~~N~ 85 (222)
.+++|++++|.++.+++ +..+++|+.|++++|.++.+++ +..+++|++|++++|+++.++. +..+++|+.|++++|.
T Consensus 244 ~L~~L~l~~n~l~~~~~-~~~l~~L~~L~l~~n~l~~~~~-~~~l~~L~~L~L~~n~l~~~~~-~~~l~~L~~L~L~~n~ 320 (466)
T 1o6v_A 244 NLTDLDLANNQISNLAP-LSGLTKLTELKLGANQISNISP-LAGLTALTNLELNENQLEDISP-ISNLKNLTYLTLYFNN 320 (466)
T ss_dssp TCSEEECCSSCCCCCGG-GTTCTTCSEEECCSSCCCCCGG-GTTCTTCSEEECCSSCCSCCGG-GGGCTTCSEEECCSSC
T ss_pred CCCEEECCCCccccchh-hhcCCCCCEEECCCCccCcccc-ccCCCccCeEEcCCCcccCchh-hcCCCCCCEEECcCCc
Confidence 45677777777777654 6677777777777777777664 6677777777777777776643 6667777777777777
Q ss_pred cCCCcchHhhcCCCCCCEEEeeCCCCCCchhHHHHHHHhCCccccccCC
Q 027557 86 ITRWSELKVLKSLVSLNNLNLQGNPVAEYDKLAKKVKNLLPSLHIFNAR 134 (222)
Q Consensus 86 i~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~l~~~ 134 (222)
+.++++ +..+++|+.|++++|++.+.+. +..+++|+.|+..
T Consensus 321 l~~~~~---~~~l~~L~~L~l~~n~l~~~~~-----l~~l~~L~~L~l~ 361 (466)
T 1o6v_A 321 ISDISP---VSSLTKLQRLFFYNNKVSDVSS-----LANLTNINWLSAG 361 (466)
T ss_dssp CSCCGG---GGGCTTCCEEECCSSCCCCCGG-----GTTCTTCCEEECC
T ss_pred CCCchh---hccCccCCEeECCCCccCCchh-----hccCCCCCEEeCC
Confidence 776654 5666777777777777666542 2356666665444
No 112
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=99.51 E-value=1.8e-13 Score=116.91 Aligned_cols=119 Identities=28% Similarity=0.359 Sum_probs=88.4
Q ss_pred CccEEEeecCCCccchhhhcCCCCCcEEEcccCCCccccccccCCccCCEEecccCcCCcCchhhhCCCCCceeeccCCc
Q 027557 6 RDCPAVLSRNPIREIGDSLLNMKAITKLSLSNCQVQIIGSSLKSCTELKELRLAHNDIKTLPAELAFNKKLQNLDLGKNL 85 (222)
Q Consensus 6 ~~~~L~L~~n~l~~lp~~~~~l~~L~~L~L~~n~i~~lp~~~~~l~~L~~L~l~~N~i~~lp~~~~~l~~L~~L~L~~N~ 85 (222)
.+++|++++|.++.++ .+..+++|+.|++++|.++.+++ +..+++|++|++++|.++.++. +..+++|+.|++++|.
T Consensus 222 ~L~~L~l~~n~l~~~~-~l~~l~~L~~L~l~~n~l~~~~~-~~~l~~L~~L~l~~n~l~~~~~-~~~l~~L~~L~L~~n~ 298 (466)
T 1o6v_A 222 NLDELSLNGNQLKDIG-TLASLTNLTDLDLANNQISNLAP-LSGLTKLTELKLGANQISNISP-LAGLTALTNLELNENQ 298 (466)
T ss_dssp TCCEEECCSSCCCCCG-GGGGCTTCSEEECCSSCCCCCGG-GTTCTTCSEEECCSSCCCCCGG-GTTCTTCSEEECCSSC
T ss_pred CCCEEECCCCCcccch-hhhcCCCCCEEECCCCccccchh-hhcCCCCCEEECCCCccCcccc-ccCCCccCeEEcCCCc
Confidence 4577888888887773 56777888888888888877764 7777888888888888877754 7777888888888888
Q ss_pred cCCCcchHhhcCCCCCCEEEeeCCCCCCchhHHHHHHHhCCccccccCCC
Q 027557 86 ITRWSELKVLKSLVSLNNLNLQGNPVAEYDKLAKKVKNLLPSLHIFNARP 135 (222)
Q Consensus 86 i~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~l~~~~ 135 (222)
+.++++ +..+++|+.|++++|.+.+.+. ...+++|+.|+...
T Consensus 299 l~~~~~---~~~l~~L~~L~L~~n~l~~~~~-----~~~l~~L~~L~l~~ 340 (466)
T 1o6v_A 299 LEDISP---ISNLKNLTYLTLYFNNISDISP-----VSSLTKLQRLFFYN 340 (466)
T ss_dssp CSCCGG---GGGCTTCSEEECCSSCCSCCGG-----GGGCTTCCEEECCS
T ss_pred ccCchh---hcCCCCCCEEECcCCcCCCchh-----hccCccCCEeECCC
Confidence 877664 6777888888888888777654 24677777665543
No 113
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=99.50 E-value=7.2e-14 Score=104.10 Aligned_cols=87 Identities=18% Similarity=0.235 Sum_probs=79.1
Q ss_pred CCccEEEeecCCCccch-hhhcCCCCCcEEEcccCCCcccccc-ccCCccCCEEecccCcCCcCchh-hhCCCCCceeec
Q 027557 5 IRDCPAVLSRNPIREIG-DSLLNMKAITKLSLSNCQVQIIGSS-LKSCTELKELRLAHNDIKTLPAE-LAFNKKLQNLDL 81 (222)
Q Consensus 5 ~~~~~L~L~~n~l~~lp-~~~~~l~~L~~L~L~~n~i~~lp~~-~~~l~~L~~L~l~~N~i~~lp~~-~~~l~~L~~L~L 81 (222)
-.+++|+|++|.|+.++ ..|..+++|++|+|++|.|+.+|.. |..+++|++|+|++|+|+.+|.. |..+++|++|+|
T Consensus 33 ~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~L~~L~L 112 (174)
T 2r9u_A 33 TDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLNDNHLKSIPRGAFDNLKSLTHIYL 112 (174)
T ss_dssp TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCSEEEC
T ss_pred CCCcEEEeCCCCccccCHHHhcCCcCCCEEECCCCCCCccChhHhCCcchhhEEECCCCccceeCHHHhccccCCCEEEe
Confidence 35689999999999884 5789999999999999999999977 68999999999999999999876 889999999999
Q ss_pred cCCccCCCcc
Q 027557 82 GKNLITRWSE 91 (222)
Q Consensus 82 ~~N~i~~~~~ 91 (222)
++|.+...+.
T Consensus 113 ~~N~~~c~~~ 122 (174)
T 2r9u_A 113 YNNPWDCECR 122 (174)
T ss_dssp CSSCBCTTBG
T ss_pred CCCCcccccc
Confidence 9999987664
No 114
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=99.49 E-value=7.4e-14 Score=126.24 Aligned_cols=105 Identities=30% Similarity=0.290 Sum_probs=49.0
Q ss_pred ccEEEeecCCCc-cchhhhcCCCCCcEEEcccCCCcc-ccccccCCccCCEEecccCcCC-cCchhhhCCCCCceeeccC
Q 027557 7 DCPAVLSRNPIR-EIGDSLLNMKAITKLSLSNCQVQI-IGSSLKSCTELKELRLAHNDIK-TLPAELAFNKKLQNLDLGK 83 (222)
Q Consensus 7 ~~~L~L~~n~l~-~lp~~~~~l~~L~~L~L~~n~i~~-lp~~~~~l~~L~~L~l~~N~i~-~lp~~~~~l~~L~~L~L~~ 83 (222)
+++|+|++|.++ .+|..+..+++|++|+|++|.++. +|..+..+++|++|++++|.++ .+|..+..+++|+.|++++
T Consensus 396 L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~ 475 (768)
T 3rgz_A 396 LQELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQELMYVKTLETLILDF 475 (768)
T ss_dssp CCEEECCSSEEEEECCGGGGGCTTCCEEECCSSEEESCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCS
T ss_pred ccEEECCCCccccccCHHHhcCCCCCEEECcCCcccCcccHHHhcCCCCCEEECCCCcccCcCCHHHcCCCCceEEEecC
Confidence 445555555555 344445555555555555555543 3333444444555555444444 3344444444444444444
Q ss_pred CccCCCcchHhhcCCCCCCEEEeeCCCCC
Q 027557 84 NLITRWSELKVLKSLVSLNNLNLQGNPVA 112 (222)
Q Consensus 84 N~i~~~~~~~~~~~l~~L~~L~l~~N~l~ 112 (222)
|.+.+..+ ..+..+++|+.|++++|++.
T Consensus 476 N~l~~~~p-~~l~~l~~L~~L~L~~N~l~ 503 (768)
T 3rgz_A 476 NDLTGEIP-SGLSNCTNLNWISLSNNRLT 503 (768)
T ss_dssp SCCCSCCC-GGGGGCTTCCEEECCSSCCC
T ss_pred CcccCcCC-HHHhcCCCCCEEEccCCccC
Confidence 44443221 23444444444444444444
No 115
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=99.48 E-value=5.4e-14 Score=128.34 Aligned_cols=127 Identities=20% Similarity=0.154 Sum_probs=89.5
Q ss_pred CccEEEeecCCCccc-hhhhcCCCCCcEEEcccCC-Cccc-cccccCCccCCEEecccCcCCcC-chhhhCCCCCceeec
Q 027557 6 RDCPAVLSRNPIREI-GDSLLNMKAITKLSLSNCQ-VQII-GSSLKSCTELKELRLAHNDIKTL-PAELAFNKKLQNLDL 81 (222)
Q Consensus 6 ~~~~L~L~~n~l~~l-p~~~~~l~~L~~L~L~~n~-i~~l-p~~~~~l~~L~~L~l~~N~i~~l-p~~~~~l~~L~~L~L 81 (222)
++++|+|++|.|+.+ |..|.++++|++|+|++|. +..+ |..|..+++|++|+|++|.|+.+ |..|..+++|++|+|
T Consensus 25 ~l~~LdLs~N~i~~i~~~~~~~l~~L~~LdLs~n~~~~~i~~~~f~~L~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L 104 (844)
T 3j0a_A 25 TTERLLLSFNYIRTVTASSFPFLEQLQLLELGSQYTPLTIDKEAFRNLPNLRILDLGSSKIYFLHPDAFQGLFHLFELRL 104 (844)
T ss_dssp TCCEEEEESCCCCEECSSSCSSCCSCSEEEECTTCCCCEECTTTTSSCTTCCEEECTTCCCCEECTTSSCSCSSCCCEEC
T ss_pred CcCEEECCCCcCCccChhHCcccccCeEEeCCCCCCccccCHHHhcCCCCCCEEECCCCcCcccCHhHccCCcccCEeeC
Confidence 457888888888876 4577888888888888884 4446 44478888888888888888755 566788888888888
Q ss_pred cCCccCC-CcchHhhcCCCCCCEEEeeCCCCCCchhHHHHHHHhCCccccccCC
Q 027557 82 GKNLITR-WSELKVLKSLVSLNNLNLQGNPVAEYDKLAKKVKNLLPSLHIFNAR 134 (222)
Q Consensus 82 ~~N~i~~-~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~l~~~ 134 (222)
++|.+.+ ++.-..++.+++|++|++++|.+...... ..+..+++|+.|+..
T Consensus 105 s~n~l~~~~~~~~~~~~L~~L~~L~Ls~N~l~~~~~~--~~~~~L~~L~~L~Ls 156 (844)
T 3j0a_A 105 YFCGLSDAVLKDGYFRNLKALTRLDLSKNQIRSLYLH--PSFGKLNSLKSIDFS 156 (844)
T ss_dssp TTCCCSSCCSTTCCCSSCSSCCEEEEESCCCCCCCCC--GGGGTCSSCCEEEEE
T ss_pred cCCCCCcccccCccccccCCCCEEECCCCcccccccc--hhHhhCCCCCEEECC
Confidence 8888776 23212377788888888888877665310 023467777776543
No 116
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=99.48 E-value=9.4e-14 Score=103.06 Aligned_cols=86 Identities=22% Similarity=0.276 Sum_probs=78.0
Q ss_pred CCccEEEeecCCCccch-hhhcCCCCCcEEEcccCCCcccccc-ccCCccCCEEecccCcCCcCchh-hhCCCCCceeec
Q 027557 5 IRDCPAVLSRNPIREIG-DSLLNMKAITKLSLSNCQVQIIGSS-LKSCTELKELRLAHNDIKTLPAE-LAFNKKLQNLDL 81 (222)
Q Consensus 5 ~~~~~L~L~~n~l~~lp-~~~~~l~~L~~L~L~~n~i~~lp~~-~~~l~~L~~L~l~~N~i~~lp~~-~~~l~~L~~L~L 81 (222)
-.+++|+|++|.|+.++ ..|..+++|++|+|++|.|+.+|+. |..+++|++|+|++|+|+.+|.. |..+++|++|+|
T Consensus 30 ~~l~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L 109 (170)
T 3g39_A 30 TTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLNDNQLKSIPRGAFDNLKSLTHIWL 109 (170)
T ss_dssp TTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEEC
T ss_pred CCCcEEEcCCCcCCccChhhhcCcccCCEEECCCCCcCccChhhccCCCCCCEEECCCCccCEeCHHHhcCCCCCCEEEe
Confidence 35689999999999984 5789999999999999999999877 68999999999999999999765 889999999999
Q ss_pred cCCccCCCc
Q 027557 82 GKNLITRWS 90 (222)
Q Consensus 82 ~~N~i~~~~ 90 (222)
++|.+....
T Consensus 110 ~~N~~~c~c 118 (170)
T 3g39_A 110 LNNPWDCAC 118 (170)
T ss_dssp CSSCBCTTB
T ss_pred CCCCCCCCc
Confidence 999998654
No 117
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=99.47 E-value=1.2e-13 Score=124.82 Aligned_cols=125 Identities=23% Similarity=0.183 Sum_probs=105.9
Q ss_pred CccEEEeecCCCc-cchhhhcCCCCCcEEEcccCCCcc-ccccccCCccCCEEecccCcCC-cCchhhhCCCCCceeecc
Q 027557 6 RDCPAVLSRNPIR-EIGDSLLNMKAITKLSLSNCQVQI-IGSSLKSCTELKELRLAHNDIK-TLPAELAFNKKLQNLDLG 82 (222)
Q Consensus 6 ~~~~L~L~~n~l~-~lp~~~~~l~~L~~L~L~~n~i~~-lp~~~~~l~~L~~L~l~~N~i~-~lp~~~~~l~~L~~L~L~ 82 (222)
.+++|+|++|.++ .+|..+..+++|++|++++|.++. +|..+..+++|++|++++|+++ .+|..+..+++|+.|+|+
T Consensus 419 ~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~ 498 (768)
T 3rgz_A 419 ELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQELMYVKTLETLILDFNDLTGEIPSGLSNCTNLNWISLS 498 (768)
T ss_dssp TCCEEECCSSEEESCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECC
T ss_pred CCCEEECcCCcccCcccHHHhcCCCCCEEECCCCcccCcCCHHHcCCCCceEEEecCCcccCcCCHHHhcCCCCCEEEcc
Confidence 4689999999998 667889999999999999999985 7777999999999999999998 678889999999999999
Q ss_pred CCccCCCcchHhhcCCCCCCEEEeeCCCCCCc-hhHHHHHHHhCCccccccCCC
Q 027557 83 KNLITRWSELKVLKSLVSLNNLNLQGNPVAEY-DKLAKKVKNLLPSLHIFNARP 135 (222)
Q Consensus 83 ~N~i~~~~~~~~~~~l~~L~~L~l~~N~l~~~-~~~~~~~~~~l~~L~~l~~~~ 135 (222)
+|++.+..+ ..++.+++|+.|++++|.+.+. |. .+..+++|+.++...
T Consensus 499 ~N~l~~~~p-~~~~~l~~L~~L~L~~N~l~~~~p~----~l~~l~~L~~L~Ls~ 547 (768)
T 3rgz_A 499 NNRLTGEIP-KWIGRLENLAILKLSNNSFSGNIPA----ELGDCRSLIWLDLNT 547 (768)
T ss_dssp SSCCCSCCC-GGGGGCTTCCEEECCSSCCEEECCG----GGGGCTTCCEEECCS
T ss_pred CCccCCcCC-hHHhcCCCCCEEECCCCcccCcCCH----HHcCCCCCCEEECCC
Confidence 999985433 4789999999999999998743 43 335788888887654
No 118
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=99.46 E-value=1.4e-13 Score=120.24 Aligned_cols=111 Identities=15% Similarity=0.152 Sum_probs=62.0
Q ss_pred CccEEEeecCCCccchhhhcCCCCCcEEEcccCCCccccccccCCccCCEEecccCcCCcCchhhhCCCCCceeeccCCc
Q 027557 6 RDCPAVLSRNPIREIGDSLLNMKAITKLSLSNCQVQIIGSSLKSCTELKELRLAHNDIKTLPAELAFNKKLQNLDLGKNL 85 (222)
Q Consensus 6 ~~~~L~L~~n~l~~lp~~~~~l~~L~~L~L~~n~i~~lp~~~~~l~~L~~L~l~~N~i~~lp~~~~~l~~L~~L~L~~N~ 85 (222)
.+++|+|++|.|+.+|. .+++|+.|+|++|.|+.+|. .+++|++|+|++|+|+.+|. +. ++|+.|+|++|.
T Consensus 121 ~L~~L~Ls~N~l~~lp~---~l~~L~~L~Ls~N~l~~lp~---~l~~L~~L~Ls~N~L~~lp~-l~--~~L~~L~Ls~N~ 191 (571)
T 3cvr_A 121 SLKHLDVDNNQLTMLPE---LPALLEYINADNNQLTMLPE---LPTSLEVLSVRNNQLTFLPE-LP--ESLEALDVSTNL 191 (571)
T ss_dssp TCCEEECCSSCCSCCCC---CCTTCCEEECCSSCCSCCCC---CCTTCCEEECCSSCCSCCCC-CC--TTCCEEECCSSC
T ss_pred CCCEEECCCCcCCCCCC---cCccccEEeCCCCccCcCCC---cCCCcCEEECCCCCCCCcch-hh--CCCCEEECcCCC
Confidence 34555555555555544 45556666666666665553 34566666666666666654 43 566666666666
Q ss_pred cCCCcchHhhcCCCCC-------CEEEeeCCCCCCchhHHHHHHHhCCccccccCC
Q 027557 86 ITRWSELKVLKSLVSL-------NNLNLQGNPVAEYDKLAKKVKNLLPSLHIFNAR 134 (222)
Q Consensus 86 i~~~~~~~~~~~l~~L-------~~L~l~~N~l~~~~~~~~~~~~~l~~L~~l~~~ 134 (222)
|+.+|. +.. +| +.|++++|.|+.+|... ..+++|+.|+..
T Consensus 192 L~~lp~---~~~--~L~~~~~~L~~L~Ls~N~l~~lp~~l----~~l~~L~~L~L~ 238 (571)
T 3cvr_A 192 LESLPA---VPV--RNHHSEETEIFFRCRENRITHIPENI----LSLDPTCTIILE 238 (571)
T ss_dssp CSSCCC---CC----------CCEEEECCSSCCCCCCGGG----GGSCTTEEEECC
T ss_pred CCchhh---HHH--hhhcccccceEEecCCCcceecCHHH----hcCCCCCEEEee
Confidence 666554 222 44 66666666666665532 246666655443
No 119
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=99.46 E-value=2.2e-13 Score=119.00 Aligned_cols=99 Identities=21% Similarity=0.213 Sum_probs=87.5
Q ss_pred CccEEEeecCCCccchhhhcCCCCCcEEEcccCCCccccccccCCccCCEEecccCcCCcCchhhhCCCCC-------ce
Q 027557 6 RDCPAVLSRNPIREIGDSLLNMKAITKLSLSNCQVQIIGSSLKSCTELKELRLAHNDIKTLPAELAFNKKL-------QN 78 (222)
Q Consensus 6 ~~~~L~L~~n~l~~lp~~~~~l~~L~~L~L~~n~i~~lp~~~~~l~~L~~L~l~~N~i~~lp~~~~~l~~L-------~~ 78 (222)
.+++|+|++|.|+.+|. .+++|++|+|++|.|+.+|. +. ++|++|+|++|+|+.+|. +.. +| +.
T Consensus 141 ~L~~L~Ls~N~l~~lp~---~l~~L~~L~Ls~N~L~~lp~-l~--~~L~~L~Ls~N~L~~lp~-~~~--~L~~~~~~L~~ 211 (571)
T 3cvr_A 141 LLEYINADNNQLTMLPE---LPTSLEVLSVRNNQLTFLPE-LP--ESLEALDVSTNLLESLPA-VPV--RNHHSEETEIF 211 (571)
T ss_dssp TCCEEECCSSCCSCCCC---CCTTCCEEECCSSCCSCCCC-CC--TTCCEEECCSSCCSSCCC-CC----------CCEE
T ss_pred cccEEeCCCCccCcCCC---cCCCcCEEECCCCCCCCcch-hh--CCCCEEECcCCCCCchhh-HHH--hhhcccccceE
Confidence 46899999999999986 67899999999999999997 65 899999999999999987 554 77 99
Q ss_pred eeccCCccCCCcchHhhcCCCCCCEEEeeCCCCCCch
Q 027557 79 LDLGKNLITRWSELKVLKSLVSLNNLNLQGNPVAEYD 115 (222)
Q Consensus 79 L~L~~N~i~~~~~~~~~~~l~~L~~L~l~~N~l~~~~ 115 (222)
|+|++|.|+.+|. .+..+++|+.|++++|++++..
T Consensus 212 L~Ls~N~l~~lp~--~l~~l~~L~~L~L~~N~l~~~~ 246 (571)
T 3cvr_A 212 FRCRENRITHIPE--NILSLDPTCTIILEDNPLSSRI 246 (571)
T ss_dssp EECCSSCCCCCCG--GGGGSCTTEEEECCSSSCCHHH
T ss_pred EecCCCcceecCH--HHhcCCCCCEEEeeCCcCCCcC
Confidence 9999999999987 6778999999999999998754
No 120
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=99.46 E-value=2.6e-13 Score=123.84 Aligned_cols=110 Identities=20% Similarity=0.200 Sum_probs=95.4
Q ss_pred CccEEEeecCC-Cccc-hhhhcCCCCCcEEEcccCCCccc-cccccCCccCCEEecccCcCCc-Cchh--hhCCCCCcee
Q 027557 6 RDCPAVLSRNP-IREI-GDSLLNMKAITKLSLSNCQVQII-GSSLKSCTELKELRLAHNDIKT-LPAE--LAFNKKLQNL 79 (222)
Q Consensus 6 ~~~~L~L~~n~-l~~l-p~~~~~l~~L~~L~L~~n~i~~l-p~~~~~l~~L~~L~l~~N~i~~-lp~~--~~~l~~L~~L 79 (222)
.+++|+|++|. +..+ |..|.++++|++|+|++|.|+.+ |..|..+++|++|+|++|.++. +|.. +..+++|++|
T Consensus 49 ~L~~LdLs~n~~~~~i~~~~f~~L~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~L~~L~~L 128 (844)
T 3j0a_A 49 QLQLLELGSQYTPLTIDKEAFRNLPNLRILDLGSSKIYFLHPDAFQGLFHLFELRLYFCGLSDAVLKDGYFRNLKALTRL 128 (844)
T ss_dssp SCSEEEECTTCCCCEECTTTTSSCTTCCEEECTTCCCCEECTTSSCSCSSCCCEECTTCCCSSCCSTTCCCSSCSSCCEE
T ss_pred cCeEEeCCCCCCccccCHHHhcCCCCCCEEECCCCcCcccCHhHccCCcccCEeeCcCCCCCcccccCccccccCCCCEE
Confidence 45899999995 5577 56899999999999999999996 5569999999999999999985 5554 8899999999
Q ss_pred eccCCccCCCcchHhhcCCCCCCEEEeeCCCCCCch
Q 027557 80 DLGKNLITRWSELKVLKSLVSLNNLNLQGNPVAEYD 115 (222)
Q Consensus 80 ~L~~N~i~~~~~~~~~~~l~~L~~L~l~~N~l~~~~ 115 (222)
+|++|.+.+++.-..++.+++|++|++++|.+....
T Consensus 129 ~Ls~N~l~~~~~~~~~~~L~~L~~L~Ls~N~i~~~~ 164 (844)
T 3j0a_A 129 DLSKNQIRSLYLHPSFGKLNSLKSIDFSSNQIFLVC 164 (844)
T ss_dssp EEESCCCCCCCCCGGGGTCSSCCEEEEESSCCCCCC
T ss_pred ECCCCcccccccchhHhhCCCCCEEECCCCcCCeeC
Confidence 999999998754247899999999999999987753
No 121
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=99.45 E-value=6.1e-14 Score=116.92 Aligned_cols=131 Identities=18% Similarity=0.259 Sum_probs=102.6
Q ss_pred CCccEEEeecCCCc--cch---hhhcCCCCCcEEEcccCCCcc------ccccccCCccCCEEecccCcC-----CcCch
Q 027557 5 IRDCPAVLSRNPIR--EIG---DSLLNMKAITKLSLSNCQVQI------IGSSLKSCTELKELRLAHNDI-----KTLPA 68 (222)
Q Consensus 5 ~~~~~L~L~~n~l~--~lp---~~~~~l~~L~~L~L~~n~i~~------lp~~~~~l~~L~~L~l~~N~i-----~~lp~ 68 (222)
-.+++|+|++|.|+ .++ ..+..+++|++|+|++|.|+. +|..+..+++|++|+|++|.| ..+|.
T Consensus 159 ~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~g~~~l~~~~l~~~~~L~~L~Ls~n~l~~~g~~~l~~ 238 (386)
T 2ca6_A 159 PPLRSIICGRNRLENGSMKEWAKTFQSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAI 238 (386)
T ss_dssp CCCCEEECCSSCCTGGGHHHHHHHHHHCTTCCEEECCSSCCCHHHHHHHHHTTGGGCTTCCEEECCSSCCHHHHHHHHHH
T ss_pred CCCcEEECCCCCCCcHHHHHHHHHHHhCCCcCEEECcCCCCCHhHHHHHHHHHhhcCCCccEEECcCCCCCcHHHHHHHH
Confidence 36799999999997 455 467789999999999999983 443688999999999999999 45777
Q ss_pred hhhCCCCCceeeccCCccCCCcch---Hhh--cCCCCCCEEEeeCCCCCCc--hhHHHHHHHhCCccccccCCC
Q 027557 69 ELAFNKKLQNLDLGKNLITRWSEL---KVL--KSLVSLNNLNLQGNPVAEY--DKLAKKVKNLLPSLHIFNARP 135 (222)
Q Consensus 69 ~~~~l~~L~~L~L~~N~i~~~~~~---~~~--~~l~~L~~L~l~~N~l~~~--~~~~~~~~~~l~~L~~l~~~~ 135 (222)
.+..+++|++|+|++|.|+..... ..+ +.+++|++|++++|.+... ......+...+++|+.|+...
T Consensus 239 ~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~~~L~~L~L~~n~i~~~g~~~l~~~l~~~l~~L~~L~l~~ 312 (386)
T 2ca6_A 239 ALKSWPNLRELGLNDCLLSARGAAAVVDAFSKLENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLELNG 312 (386)
T ss_dssp HGGGCTTCCEEECTTCCCCHHHHHHHHHHHHTCSSCCCCEEECCSSCCBHHHHHHHHHHHHHHCTTCCEEECTT
T ss_pred HHccCCCcCEEECCCCCCchhhHHHHHHHHhhccCCCeEEEECcCCcCCHHHHHHHHHHHHhcCCCceEEEccC
Confidence 889999999999999999875211 245 3489999999999999872 111222335689999886653
No 122
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=99.43 E-value=4.3e-13 Score=114.37 Aligned_cols=80 Identities=16% Similarity=0.164 Sum_probs=49.5
Q ss_pred CccEEEeecCCCccchhhhcCCCCCcEEEcccCCCccccccccCCccCCEEecccCcCCcCchhhhCCCCCceeeccCCc
Q 027557 6 RDCPAVLSRNPIREIGDSLLNMKAITKLSLSNCQVQIIGSSLKSCTELKELRLAHNDIKTLPAELAFNKKLQNLDLGKNL 85 (222)
Q Consensus 6 ~~~~L~L~~n~l~~lp~~~~~l~~L~~L~L~~n~i~~lp~~~~~l~~L~~L~l~~N~i~~lp~~~~~l~~L~~L~L~~N~ 85 (222)
.+++|+|++|.++.+| .+..+++|++|++++|.++.+|..+ .+|++|++++|+++.+| .+..+++|+.|++++|.
T Consensus 132 ~L~~L~L~~n~l~~lp-~~~~l~~L~~L~l~~N~l~~lp~~~---~~L~~L~L~~n~l~~l~-~~~~l~~L~~L~l~~N~ 206 (454)
T 1jl5_A 132 LLEYLGVSNNQLEKLP-ELQNSSFLKIIDVDNNSLKKLPDLP---PSLEFIAAGNNQLEELP-ELQNLPFLTAIYADNNS 206 (454)
T ss_dssp TCCEEECCSSCCSSCC-CCTTCTTCCEEECCSSCCSCCCCCC---TTCCEEECCSSCCSSCC-CCTTCTTCCEEECCSSC
T ss_pred CCCEEECcCCCCCCCc-ccCCCCCCCEEECCCCcCcccCCCc---ccccEEECcCCcCCcCc-cccCCCCCCEEECCCCc
Confidence 4566677777766665 4666677777777777766665332 35666666666666655 45566666666666665
Q ss_pred cCCCc
Q 027557 86 ITRWS 90 (222)
Q Consensus 86 i~~~~ 90 (222)
+.++|
T Consensus 207 l~~l~ 211 (454)
T 1jl5_A 207 LKKLP 211 (454)
T ss_dssp CSSCC
T ss_pred CCcCC
Confidence 55544
No 123
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=99.42 E-value=2.1e-13 Score=113.65 Aligned_cols=130 Identities=18% Similarity=0.208 Sum_probs=91.6
Q ss_pred CCccEEEeecCCCc-----cchhhhcCC---------CCCcEEEcccCCCcc--cc---ccccCCccCCEEecccCcCCc
Q 027557 5 IRDCPAVLSRNPIR-----EIGDSLLNM---------KAITKLSLSNCQVQI--IG---SSLKSCTELKELRLAHNDIKT 65 (222)
Q Consensus 5 ~~~~~L~L~~n~l~-----~lp~~~~~l---------~~L~~L~L~~n~i~~--lp---~~~~~l~~L~~L~l~~N~i~~ 65 (222)
-.+++|+|++|.|+ .++..+..+ ++|++|+|++|.|+. +| ..+..+++|++|++++|+|+.
T Consensus 122 ~~L~~L~L~~n~l~~~~~~~l~~~l~~l~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~ 201 (386)
T 2ca6_A 122 TPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGSMKEWAKTFQSHRLLHTVKMVQNGIRP 201 (386)
T ss_dssp TTCCEEECCSSCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSSCCTGGGHHHHHHHHHHCTTCCEEECCSSCCCH
T ss_pred CCCCEEECcCCCCCHHHHHHHHHHHHHHhhhhhcccCCCCcEEECCCCCCCcHHHHHHHHHHHhCCCcCEEECcCCCCCH
Confidence 35688888888886 345566666 888888888888863 44 346678888888888888872
Q ss_pred ------CchhhhCCCCCceeeccCCccC-----CCcchHhhcCCCCCCEEEeeCCCCCCchhH-HHHHHHh--CCccccc
Q 027557 66 ------LPAELAFNKKLQNLDLGKNLIT-----RWSELKVLKSLVSLNNLNLQGNPVAEYDKL-AKKVKNL--LPSLHIF 131 (222)
Q Consensus 66 ------lp~~~~~l~~L~~L~L~~N~i~-----~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~-~~~~~~~--l~~L~~l 131 (222)
+|..+..+++|++|+|++|.|+ .++. .+..+++|++|++++|.+...... ....+.. +++|+.|
T Consensus 202 ~g~~~l~~~~l~~~~~L~~L~Ls~n~l~~~g~~~l~~--~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~~~L~~L 279 (386)
T 2ca6_A 202 EGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAI--ALKSWPNLRELGLNDCLLSARGAAAVVDAFSKLENIGLQTL 279 (386)
T ss_dssp HHHHHHHHTTGGGCTTCCEEECCSSCCHHHHHHHHHH--HGGGCTTCCEEECTTCCCCHHHHHHHHHHHHTCSSCCCCEE
T ss_pred hHHHHHHHHHhhcCCCccEEECcCCCCCcHHHHHHHH--HHccCCCcCEEECCCCCCchhhHHHHHHHHhhccCCCeEEE
Confidence 3336778888888888888884 3443 677888888888888888765221 1122222 7788877
Q ss_pred cCCCC
Q 027557 132 NARPI 136 (222)
Q Consensus 132 ~~~~~ 136 (222)
+....
T Consensus 280 ~L~~n 284 (386)
T 2ca6_A 280 RLQYN 284 (386)
T ss_dssp ECCSS
T ss_pred ECcCC
Confidence 66543
No 124
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=99.42 E-value=7.6e-13 Score=112.93 Aligned_cols=115 Identities=19% Similarity=0.204 Sum_probs=80.0
Q ss_pred CccEEEeecCCCccchhhhcCCCCCcEEEcccCCCccccccccCCccCCEEecccCcCCcCchhhhCCCCCceeeccCCc
Q 027557 6 RDCPAVLSRNPIREIGDSLLNMKAITKLSLSNCQVQIIGSSLKSCTELKELRLAHNDIKTLPAELAFNKKLQNLDLGKNL 85 (222)
Q Consensus 6 ~~~~L~L~~n~l~~lp~~~~~l~~L~~L~L~~n~i~~lp~~~~~l~~L~~L~l~~N~i~~lp~~~~~l~~L~~L~L~~N~ 85 (222)
.+++|+|++|.|+.+| +..+++|++|++++|.|+.+| +..+++|++|++++|+++.+| +..+++|++|++++|.
T Consensus 65 ~L~~L~Ls~n~l~~~~--~~~l~~L~~L~Ls~N~l~~~~--~~~l~~L~~L~L~~N~l~~l~--~~~l~~L~~L~l~~N~ 138 (457)
T 3bz5_A 65 GLTKLICTSNNITTLD--LSQNTNLTYLACDSNKLTNLD--VTPLTKLTYLNCDTNKLTKLD--VSQNPLLTYLNCARNT 138 (457)
T ss_dssp TCSEEECCSSCCSCCC--CTTCTTCSEEECCSSCCSCCC--CTTCTTCCEEECCSSCCSCCC--CTTCTTCCEEECTTSC
T ss_pred CCCEEEccCCcCCeEc--cccCCCCCEEECcCCCCceee--cCCCCcCCEEECCCCcCCeec--CCCCCcCCEEECCCCc
Confidence 4578888888888875 777888888888888888875 777888888888888888775 7777888888888887
Q ss_pred cCCCcchH-------------------hhcCCCCCCEEEeeCCCCCCchhHHHHHHHhCCccccccC
Q 027557 86 ITRWSELK-------------------VLKSLVSLNNLNLQGNPVAEYDKLAKKVKNLLPSLHIFNA 133 (222)
Q Consensus 86 i~~~~~~~-------------------~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~l~~ 133 (222)
|++++- . .+..+++|+.|++++|.+..++ +..+++|+.|+.
T Consensus 139 l~~l~l-~~l~~L~~L~l~~n~~~~~~~~~~l~~L~~L~ls~n~l~~l~------l~~l~~L~~L~l 198 (457)
T 3bz5_A 139 LTEIDV-SHNTQLTELDCHLNKKITKLDVTPQTQLTTLDCSFNKITELD------VSQNKLLNRLNC 198 (457)
T ss_dssp CSCCCC-TTCTTCCEEECTTCSCCCCCCCTTCTTCCEEECCSSCCCCCC------CTTCTTCCEEEC
T ss_pred cceecc-ccCCcCCEEECCCCCcccccccccCCcCCEEECCCCccceec------cccCCCCCEEEC
Confidence 777531 0 1334455555566666555544 134555555543
No 125
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=99.40 E-value=3.2e-13 Score=110.15 Aligned_cols=128 Identities=19% Similarity=0.152 Sum_probs=66.5
Q ss_pred ccEEEeecCCCcc--chhhhcCCCCCcEEEcccCCCcc-ccccccCCccCCEEecccC-cCC--cCchhhhCCCCCceee
Q 027557 7 DCPAVLSRNPIRE--IGDSLLNMKAITKLSLSNCQVQI-IGSSLKSCTELKELRLAHN-DIK--TLPAELAFNKKLQNLD 80 (222)
Q Consensus 7 ~~~L~L~~n~l~~--lp~~~~~l~~L~~L~L~~n~i~~-lp~~~~~l~~L~~L~l~~N-~i~--~lp~~~~~l~~L~~L~ 80 (222)
+++|+|++|.++. ++..+..+++|++|+|++|.++. .+..+..+++|++|++++| .++ .++..+..+++|++|+
T Consensus 95 L~~L~L~~~~l~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~l~~~~~L~~L~L~~~~~l~~~~l~~~~~~~~~L~~L~ 174 (336)
T 2ast_B 95 VQHMDLSNSVIEVSTLHGILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCSRLDELN 174 (336)
T ss_dssp CCEEECTTCEECHHHHHHHHTTBCCCSEEECTTCBCCHHHHHHHTTCTTCSEEECTTCBSCCHHHHHHHHHHCTTCCEEE
T ss_pred CCEEEccCCCcCHHHHHHHHhhCCCCCEEeCcCcccCHHHHHHHhcCCCCCEEECCCCCCCCHHHHHHHHhcCCCCCEEc
Confidence 4556666666552 44555566666666666666554 4434555666666666666 455 2444455566666666
Q ss_pred ccCC-ccCCCcchHhhcCCC-CCCEEEeeCCCCCCchhHHHHHHHhCCccccccCC
Q 027557 81 LGKN-LITRWSELKVLKSLV-SLNNLNLQGNPVAEYDKLAKKVKNLLPSLHIFNAR 134 (222)
Q Consensus 81 L~~N-~i~~~~~~~~~~~l~-~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~l~~~ 134 (222)
+++| .+++......+..++ +|++|++++|.+.-...........+++|+.|+..
T Consensus 175 l~~~~~l~~~~~~~~~~~l~~~L~~L~l~~~~~~~~~~~l~~~~~~~~~L~~L~l~ 230 (336)
T 2ast_B 175 LSWCFDFTEKHVQVAVAHVSETITQLNLSGYRKNLQKSDLSTLVRRCPNLVHLDLS 230 (336)
T ss_dssp CCCCTTCCHHHHHHHHHHSCTTCCEEECCSCGGGSCHHHHHHHHHHCTTCSEEECT
T ss_pred CCCCCCcChHHHHHHHHhcccCCCEEEeCCCcccCCHHHHHHHHhhCCCCCEEeCC
Confidence 6666 555421112455566 66666666663211111112233455666655444
No 126
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=99.40 E-value=9.5e-13 Score=116.18 Aligned_cols=95 Identities=21% Similarity=0.192 Sum_probs=49.0
Q ss_pred ccEEEeecCCCccchhhhcCCCCCcEEEcccCCCccccccccCCccCCEEecccCcCCcCchhhhCCCCCceeeccCCcc
Q 027557 7 DCPAVLSRNPIREIGDSLLNMKAITKLSLSNCQVQIIGSSLKSCTELKELRLAHNDIKTLPAELAFNKKLQNLDLGKNLI 86 (222)
Q Consensus 7 ~~~L~L~~n~l~~lp~~~~~l~~L~~L~L~~n~i~~lp~~~~~l~~L~~L~l~~N~i~~lp~~~~~l~~L~~L~L~~N~i 86 (222)
+++|+|++|.|+.||. .+++|++|+|++|.|+.+|. .+++|++|++++|.|+.+|. .+++|+.|++++|.|
T Consensus 63 L~~L~L~~N~l~~lp~---~l~~L~~L~Ls~N~l~~lp~---~l~~L~~L~Ls~N~l~~l~~---~l~~L~~L~L~~N~l 133 (622)
T 3g06_A 63 ITTLVIPDNNLTSLPA---LPPELRTLEVSGNQLTSLPV---LPPGLLELSIFSNPLTHLPA---LPSGLCKLWIFGNQL 133 (622)
T ss_dssp CSEEEECSCCCSCCCC---CCTTCCEEEECSCCCSCCCC---CCTTCCEEEECSCCCCCCCC---CCTTCCEEECCSSCC
T ss_pred CcEEEecCCCCCCCCC---cCCCCCEEEcCCCcCCcCCC---CCCCCCEEECcCCcCCCCCC---CCCCcCEEECCCCCC
Confidence 3445555555554443 34455555555555555443 34455555555555555543 344555555555555
Q ss_pred CCCcchHhhcCCCCCCEEEeeCCCCCCch
Q 027557 87 TRWSELKVLKSLVSLNNLNLQGNPVAEYD 115 (222)
Q Consensus 87 ~~~~~~~~~~~l~~L~~L~l~~N~l~~~~ 115 (222)
+.+|. .+++|++|++++|.+..++
T Consensus 134 ~~lp~-----~l~~L~~L~Ls~N~l~~l~ 157 (622)
T 3g06_A 134 TSLPV-----LPPGLQELSVSDNQLASLP 157 (622)
T ss_dssp SCCCC-----CCTTCCEEECCSSCCSCCC
T ss_pred CcCCC-----CCCCCCEEECcCCcCCCcC
Confidence 55543 1356666666666666554
No 127
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=99.39 E-value=4.7e-13 Score=110.28 Aligned_cols=101 Identities=15% Similarity=0.121 Sum_probs=48.0
Q ss_pred ccEEEeecCCCccchh-hhcCCCCCcEEEcccCCCcc-cccc-ccCCccCCE-EecccCcCCcCch-hhhCCCCCceeec
Q 027557 7 DCPAVLSRNPIREIGD-SLLNMKAITKLSLSNCQVQI-IGSS-LKSCTELKE-LRLAHNDIKTLPA-ELAFNKKLQNLDL 81 (222)
Q Consensus 7 ~~~L~L~~n~l~~lp~-~~~~l~~L~~L~L~~n~i~~-lp~~-~~~l~~L~~-L~l~~N~i~~lp~-~~~~l~~L~~L~L 81 (222)
+++|+|++|+|+.||+ .|.++++|++|+|++|.|.+ +|.. |..+++|.. +.+..|+|+.++. .|..+++|++|++
T Consensus 32 l~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~i~~~i~~~~f~~L~~l~~~l~~~~N~l~~l~~~~f~~l~~L~~L~l 111 (350)
T 4ay9_X 32 AIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKANNLLYINPEAFQNLPNLQYLLI 111 (350)
T ss_dssp CSEEEEESCCCSEECTTSSTTCTTCCEEEEECCTTCCEECTTSBCSCTTCCEEEEEEETTCCEECTTSBCCCTTCCEEEE
T ss_pred CCEEEccCCcCCCcCHHHHcCCCCCCEEECcCCCCCCccChhHhhcchhhhhhhcccCCcccccCchhhhhccccccccc
Confidence 3455555555555543 34555555555555555433 4332 444544443 3334455554432 2455555555555
Q ss_pred cCCccCCCcchHhhcCCCCCCEEEeeC
Q 027557 82 GKNLITRWSELKVLKSLVSLNNLNLQG 108 (222)
Q Consensus 82 ~~N~i~~~~~~~~~~~l~~L~~L~l~~ 108 (222)
++|.|..+++ ..+.....+..+++.+
T Consensus 112 ~~n~l~~~~~-~~~~~~~~l~~l~l~~ 137 (350)
T 4ay9_X 112 SNTGIKHLPD-VHKIHSLQKVLLDIQD 137 (350)
T ss_dssp EEECCSSCCC-CTTCCBSSCEEEEEES
T ss_pred cccccccCCc-hhhcccchhhhhhhcc
Confidence 5555555543 2233333444455443
No 128
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=99.38 E-value=1.6e-12 Score=110.83 Aligned_cols=98 Identities=21% Similarity=0.324 Sum_probs=63.6
Q ss_pred cEEEeecCCCccchhhhcCCCCCcEEEcccCCCccccccccCCccCCEEecccCcCCcCchhhhCCCCCceeeccCCccC
Q 027557 8 CPAVLSRNPIREIGDSLLNMKAITKLSLSNCQVQIIGSSLKSCTELKELRLAHNDIKTLPAELAFNKKLQNLDLGKNLIT 87 (222)
Q Consensus 8 ~~L~L~~n~l~~lp~~~~~l~~L~~L~L~~n~i~~lp~~~~~l~~L~~L~l~~N~i~~lp~~~~~l~~L~~L~L~~N~i~ 87 (222)
++|++++|.++.+|.. .++|++|++++|.++.+| .+..+++|++|++++|+++.+|..+ .+|++|++++|.++
T Consensus 114 ~~L~l~~n~l~~l~~~---~~~L~~L~L~~n~l~~lp-~~~~l~~L~~L~l~~N~l~~lp~~~---~~L~~L~L~~n~l~ 186 (454)
T 1jl5_A 114 KSLLVDNNNLKALSDL---PPLLEYLGVSNNQLEKLP-ELQNSSFLKIIDVDNNSLKKLPDLP---PSLEFIAAGNNQLE 186 (454)
T ss_dssp CEEECCSSCCSCCCSC---CTTCCEEECCSSCCSSCC-CCTTCTTCCEEECCSSCCSCCCCCC---TTCCEEECCSSCCS
T ss_pred cEEECCCCccCcccCC---CCCCCEEECcCCCCCCCc-ccCCCCCCCEEECCCCcCcccCCCc---ccccEEECcCCcCC
Confidence 4444444444443321 146777777777777776 5777777777777777777766432 46777777777777
Q ss_pred CCcchHhhcCCCCCCEEEeeCCCCCCch
Q 027557 88 RWSELKVLKSLVSLNNLNLQGNPVAEYD 115 (222)
Q Consensus 88 ~~~~~~~~~~l~~L~~L~l~~N~l~~~~ 115 (222)
++|. ++.+++|++|++++|.+..++
T Consensus 187 ~l~~---~~~l~~L~~L~l~~N~l~~l~ 211 (454)
T 1jl5_A 187 ELPE---LQNLPFLTAIYADNNSLKKLP 211 (454)
T ss_dssp SCCC---CTTCTTCCEEECCSSCCSSCC
T ss_pred cCcc---ccCCCCCCEEECCCCcCCcCC
Confidence 7653 667777777777777766654
No 129
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=99.38 E-value=2.4e-12 Score=113.68 Aligned_cols=100 Identities=27% Similarity=0.320 Sum_probs=61.6
Q ss_pred ccEEEeecCCCccchhhhc-----------------CCCCCcEEEcccCCCccccccccCCccCCEEecccCcCCcCchh
Q 027557 7 DCPAVLSRNPIREIGDSLL-----------------NMKAITKLSLSNCQVQIIGSSLKSCTELKELRLAHNDIKTLPAE 69 (222)
Q Consensus 7 ~~~L~L~~n~l~~lp~~~~-----------------~l~~L~~L~L~~n~i~~lp~~~~~l~~L~~L~l~~N~i~~lp~~ 69 (222)
++.|+|++|.|+.+|..+. .+++|+.|+|++|.|+.+| ..+++|++|++++|.|+.+|.
T Consensus 183 L~~L~Ls~N~l~~l~~~~~~L~~L~L~~N~l~~l~~~~~~L~~L~Ls~N~L~~lp---~~l~~L~~L~Ls~N~L~~lp~- 258 (622)
T 3g06_A 183 LQELSVSDNQLASLPTLPSELYKLWAYNNRLTSLPALPSGLKELIVSGNRLTSLP---VLPSELKELMVSGNRLTSLPM- 258 (622)
T ss_dssp CCEEECCSSCCSCCCCCCTTCCEEECCSSCCSSCCCCCTTCCEEECCSSCCSCCC---CCCTTCCEEECCSSCCSCCCC-
T ss_pred CcEEECCCCCCCCCCCccchhhEEECcCCcccccCCCCCCCCEEEccCCccCcCC---CCCCcCcEEECCCCCCCcCCc-
Confidence 4566666666665543211 1245666666666666655 234566666666666666654
Q ss_pred hhCCCCCceeeccCCccCCCcchHhhcCCCCCCEEEeeCCCCCCc
Q 027557 70 LAFNKKLQNLDLGKNLITRWSELKVLKSLVSLNNLNLQGNPVAEY 114 (222)
Q Consensus 70 ~~~l~~L~~L~L~~N~i~~~~~~~~~~~l~~L~~L~l~~N~l~~~ 114 (222)
.+++|+.|+|++|.|+.+|. .+..+++|+.|++++|++.+.
T Consensus 259 --~~~~L~~L~Ls~N~L~~lp~--~l~~l~~L~~L~L~~N~l~~~ 299 (622)
T 3g06_A 259 --LPSGLLSLSVYRNQLTRLPE--SLIHLSSETTVNLEGNPLSER 299 (622)
T ss_dssp --CCTTCCEEECCSSCCCSCCG--GGGGSCTTCEEECCSCCCCHH
T ss_pred --ccccCcEEeCCCCCCCcCCH--HHhhccccCEEEecCCCCCCc
Confidence 45667777777777776665 566777777777777776654
No 130
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=99.36 E-value=4.5e-13 Score=109.31 Aligned_cols=127 Identities=18% Similarity=0.205 Sum_probs=100.6
Q ss_pred CccEEEeecCCCccchhhhcCCCCCcEEEcccCCCcc--ccccccCCccCCEEecccCcCC-cCchhhhCCCCCceeecc
Q 027557 6 RDCPAVLSRNPIREIGDSLLNMKAITKLSLSNCQVQI--IGSSLKSCTELKELRLAHNDIK-TLPAELAFNKKLQNLDLG 82 (222)
Q Consensus 6 ~~~~L~L~~n~l~~lp~~~~~l~~L~~L~L~~n~i~~--lp~~~~~l~~L~~L~l~~N~i~-~lp~~~~~l~~L~~L~L~ 82 (222)
.++.|++++|.+...+..+..+++|++|+|++|.++. +|..+..+++|++|++++|.++ ..|..+..+++|++|+++
T Consensus 71 ~l~~L~l~~n~l~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~l~~~~~L~~L~L~ 150 (336)
T 2ast_B 71 GVIAFRCPRSFMDQPLAEHFSPFRVQHMDLSNSVIEVSTLHGILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNLS 150 (336)
T ss_dssp TCSEEECTTCEECSCCCSCCCCBCCCEEECTTCEECHHHHHHHHTTBCCCSEEECTTCBCCHHHHHHHTTCTTCSEEECT
T ss_pred cceEEEcCCccccccchhhccCCCCCEEEccCCCcCHHHHHHHHhhCCCCCEEeCcCcccCHHHHHHHhcCCCCCEEECC
Confidence 4678888888888776667788999999999999875 6766888999999999999988 556678889999999999
Q ss_pred CC-ccCC--CcchHhhcCCCCCCEEEeeCC-CCCCchhHHHHHHHhCC-ccccccCCCC
Q 027557 83 KN-LITR--WSELKVLKSLVSLNNLNLQGN-PVAEYDKLAKKVKNLLP-SLHIFNARPI 136 (222)
Q Consensus 83 ~N-~i~~--~~~~~~~~~l~~L~~L~l~~N-~l~~~~~~~~~~~~~l~-~L~~l~~~~~ 136 (222)
+| .+++ ++. .+..+++|++|++++| .++... .......++ +|+.|+....
T Consensus 151 ~~~~l~~~~l~~--~~~~~~~L~~L~l~~~~~l~~~~--~~~~~~~l~~~L~~L~l~~~ 205 (336)
T 2ast_B 151 GCSGFSEFALQT--LLSSCSRLDELNLSWCFDFTEKH--VQVAVAHVSETITQLNLSGY 205 (336)
T ss_dssp TCBSCCHHHHHH--HHHHCTTCCEEECCCCTTCCHHH--HHHHHHHSCTTCCEEECCSC
T ss_pred CCCCCCHHHHHH--HHhcCCCCCEEcCCCCCCcChHH--HHHHHHhcccCCCEEEeCCC
Confidence 99 6774 333 5788999999999999 777531 223456788 8998877654
No 131
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=99.35 E-value=7.5e-13 Score=108.68 Aligned_cols=109 Identities=13% Similarity=0.157 Sum_probs=83.7
Q ss_pred CccEEEeec-CCCccch-hhhcCCCCCcEEEcccCCCcccccc-ccCCccCCEEecccCcCCcCchhhhCCCCCceeecc
Q 027557 6 RDCPAVLSR-NPIREIG-DSLLNMKAITKLSLSNCQVQIIGSS-LKSCTELKELRLAHNDIKTLPAELAFNKKLQNLDLG 82 (222)
Q Consensus 6 ~~~~L~L~~-n~l~~lp-~~~~~l~~L~~L~L~~n~i~~lp~~-~~~l~~L~~L~l~~N~i~~lp~~~~~l~~L~~L~L~ 82 (222)
.+++|+|++ |.|+.+| ..|..+++|+.|+|++|.|+.+++. |..+++|++|+|++|+|+.+|..+.....|+.|+|.
T Consensus 32 ~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~L~~l~l~ 111 (347)
T 2ifg_A 32 NLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSFNALESLSWKTVQGLSLQELVLS 111 (347)
T ss_dssp CCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECCSSCCSCCCSTTTCSCCCCEEECC
T ss_pred CeeEEEccCCCCCCCcChhHhccccCCCEEECCCCccceeCHHHhcCCcCCCEEeCCCCccceeCHHHcccCCceEEEee
Confidence 478999996 9999987 4789999999999999999998765 899999999999999999998764444449999999
Q ss_pred CCccCCCcchHhhcCCCCCCEEEeeCCCCCCc
Q 027557 83 KNLITRWSELKVLKSLVSLNNLNLQGNPVAEY 114 (222)
Q Consensus 83 ~N~i~~~~~~~~~~~l~~L~~L~l~~N~l~~~ 114 (222)
+|.|.....+..+..+.......+..+.+.|.
T Consensus 112 ~N~~~c~c~l~~~~~~~~~~~~~l~~~~~~C~ 143 (347)
T 2ifg_A 112 GNPLHCSCALRWLQRWEEEGLGGVPEQKLQCH 143 (347)
T ss_dssp SSCCCCCGGGHHHHHHHHTTCSSCGGGCCCCS
T ss_pred CCCccCCCccHHHHHHHHhCcccccccCCCCC
Confidence 99998755443343332222223334444443
No 132
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=99.35 E-value=3.8e-13 Score=106.53 Aligned_cols=111 Identities=19% Similarity=0.281 Sum_probs=87.8
Q ss_pred CCCCcE--EEcccCCCcccccc----ccCCccCCEEecccCcCCcCc---hhhhCCCCCceeeccCCccCCCcchHhhcC
Q 027557 27 MKAITK--LSLSNCQVQIIGSS----LKSCTELKELRLAHNDIKTLP---AELAFNKKLQNLDLGKNLITRWSELKVLKS 97 (222)
Q Consensus 27 l~~L~~--L~L~~n~i~~lp~~----~~~l~~L~~L~l~~N~i~~lp---~~~~~l~~L~~L~L~~N~i~~~~~~~~~~~ 97 (222)
.+.|.. ++++.|....++.. ...+++|+.|+|++|+|+.++ ..+..+++|+.|+|++|+|.++..+..+..
T Consensus 140 dp~L~~~~l~l~~N~~~~~~~~l~i~~~~l~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N~i~~~~~l~~l~~ 219 (267)
T 3rw6_A 140 DPDLVAQNIDVVLNRRSCMAATLRIIEENIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSERELDKIKG 219 (267)
T ss_dssp CHHHHHTTCCCCTTSHHHHHHHHHHHHHHCTTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTSCCCSGGGGGGGTT
T ss_pred CcchhhcCccccCCHHHHHHHHHHHHHhhCCCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCCccCCchhhhhccc
Confidence 334444 56677765555432 246889999999999999764 456789999999999999999876566666
Q ss_pred CCCCCEEEeeCCCCCC----chhHHHHHHHhCCccccccCCCCCh
Q 027557 98 LVSLNNLNLQGNPVAE----YDKLAKKVKNLLPSLHIFNARPINR 138 (222)
Q Consensus 98 l~~L~~L~l~~N~l~~----~~~~~~~~~~~l~~L~~l~~~~~~~ 138 (222)
+ +|+.|+|++||++. .+.|+..++..+|+|+.||+..+..
T Consensus 220 l-~L~~L~L~~Npl~~~~~~~~~y~~~il~~~P~L~~LDg~~v~p 263 (267)
T 3rw6_A 220 L-KLEELWLDGNSLCDTFRDQSTYISAIRERFPKLLRLDGHELPP 263 (267)
T ss_dssp S-CCSEEECTTSTTGGGCSSHHHHHHHHHHHCTTCCEESSCBCCC
T ss_pred C-CcceEEccCCcCccccCcchhHHHHHHHHCcccCeECCcCCCC
Confidence 6 99999999999985 3578888999999999999987764
No 133
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=99.33 E-value=3.3e-12 Score=105.60 Aligned_cols=106 Identities=25% Similarity=0.288 Sum_probs=57.4
Q ss_pred ccEEEeecCCCccch-----hhhcCCC-CCcEEEcccCCCcccc-ccccCC-----ccCCEEecccCcCCcCchh-----
Q 027557 7 DCPAVLSRNPIREIG-----DSLLNMK-AITKLSLSNCQVQIIG-SSLKSC-----TELKELRLAHNDIKTLPAE----- 69 (222)
Q Consensus 7 ~~~L~L~~n~l~~lp-----~~~~~l~-~L~~L~L~~n~i~~lp-~~~~~l-----~~L~~L~l~~N~i~~lp~~----- 69 (222)
+++|+|++|.|+.++ ..+..++ +|++|+|++|.|+... ..+..+ ++|++|+|++|.++..+..
T Consensus 24 L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~~~~l~~~ 103 (362)
T 3goz_A 24 VTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGNSLGFKNSDELVQILAAIPANVTSLNLSGNFLSYKSSDELVKT 103 (362)
T ss_dssp CCEEECTTSCGGGSCHHHHHHHHHTCCTTCCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGSCHHHHHHH
T ss_pred ceEEEccCCCCChHHHHHHHHHHHhCCCceeEEECcCCCCCHHHHHHHHHHHhccCCCccEEECcCCcCChHHHHHHHHH
Confidence 566666666666543 3455566 6666666666666532 223332 6666666666666643221
Q ss_pred hhCC-CCCceeeccCCccCCCcch---HhhcC-CCCCCEEEeeCCCCC
Q 027557 70 LAFN-KKLQNLDLGKNLITRWSEL---KVLKS-LVSLNNLNLQGNPVA 112 (222)
Q Consensus 70 ~~~l-~~L~~L~L~~N~i~~~~~~---~~~~~-l~~L~~L~l~~N~l~ 112 (222)
+..+ ++|++|+|++|.|+..+.. ..+.. .++|++|++++|.+.
T Consensus 104 l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~ 151 (362)
T 3goz_A 104 LAAIPFTITVLDLGWNDFSSKSSSEFKQAFSNLPASITSLNLRGNDLG 151 (362)
T ss_dssp HHTSCTTCCEEECCSSCGGGSCHHHHHHHHTTSCTTCCEEECTTSCGG
T ss_pred HHhCCCCccEEECcCCcCCcHHHHHHHHHHHhCCCceeEEEccCCcCC
Confidence 3333 5666666666666554431 11222 235666666666555
No 134
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=99.29 E-value=2.4e-12 Score=106.05 Aligned_cols=125 Identities=15% Similarity=0.162 Sum_probs=92.3
Q ss_pred EEEeecCCCccch-hhhcCCCCCcEEEcccCCCcccccc--------------------------ccCC-ccCCEEeccc
Q 027557 9 PAVLSRNPIREIG-DSLLNMKAITKLSLSNCQVQIIGSS--------------------------LKSC-TELKELRLAH 60 (222)
Q Consensus 9 ~L~L~~n~l~~lp-~~~~~l~~L~~L~L~~n~i~~lp~~--------------------------~~~l-~~L~~L~l~~ 60 (222)
.+.+++|+|+.++ ..|..+++|++|++++|.|+.+|.. |..+ ..++.|++++
T Consensus 84 ~l~~~~N~l~~l~~~~f~~l~~L~~L~l~~n~l~~~~~~~~~~~~~l~~l~l~~~~~i~~l~~~~f~~~~~~l~~L~L~~ 163 (350)
T 4ay9_X 84 IRIEKANNLLYINPEAFQNLPNLQYLLISNTGIKHLPDVHKIHSLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNK 163 (350)
T ss_dssp EEEEEETTCCEECTTSBCCCTTCCEEEEEEECCSSCCCCTTCCBSSCEEEEEESCTTCCEECTTSSTTSBSSCEEEECCS
T ss_pred hhcccCCcccccCchhhhhccccccccccccccccCCchhhcccchhhhhhhccccccccccccchhhcchhhhhhcccc
Confidence 4667778888775 4667788888888888877665421 2223 3577889999
Q ss_pred CcCCcCchhhhCCCCCceeecc-CCccCCCcchHhhcCCCCCCEEEeeCCCCCCchhHHHHHHHhCCccccccCCCCC
Q 027557 61 NDIKTLPAELAFNKKLQNLDLG-KNLITRWSELKVLKSLVSLNNLNLQGNPVAEYDKLAKKVKNLLPSLHIFNARPIN 137 (222)
Q Consensus 61 N~i~~lp~~~~~l~~L~~L~L~-~N~i~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~l~~~~~~ 137 (222)
|+|+.+|.......+|+.|+++ +|.++.+|. ..|..+++|+.|++++|.|+.+|.. .+..+++|+.++.....
T Consensus 164 N~i~~i~~~~f~~~~L~~l~l~~~n~l~~i~~-~~f~~l~~L~~LdLs~N~l~~lp~~---~~~~L~~L~~l~~~~l~ 237 (350)
T 4ay9_X 164 NGIQEIHNSAFNGTQLDELNLSDNNNLEELPN-DVFHGASGPVILDISRTRIHSLPSY---GLENLKKLRARSTYNLK 237 (350)
T ss_dssp SCCCEECTTSSTTEEEEEEECTTCTTCCCCCT-TTTTTEECCSEEECTTSCCCCCCSS---SCTTCCEEECTTCTTCC
T ss_pred ccccCCChhhccccchhHHhhccCCcccCCCH-HHhccCcccchhhcCCCCcCccChh---hhccchHhhhccCCCcC
Confidence 9999888776677889999987 578999886 6789999999999999999998763 23456666655554433
No 135
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=99.27 E-value=3.7e-12 Score=105.30 Aligned_cols=128 Identities=23% Similarity=0.155 Sum_probs=73.9
Q ss_pred CccEEEeecCCCccchh-h----hcC-CCCCcEEEcccCCCcc-----ccccccCCc-cCCEEecccCcCCcCch-----
Q 027557 6 RDCPAVLSRNPIREIGD-S----LLN-MKAITKLSLSNCQVQI-----IGSSLKSCT-ELKELRLAHNDIKTLPA----- 68 (222)
Q Consensus 6 ~~~~L~L~~n~l~~lp~-~----~~~-l~~L~~L~L~~n~i~~-----lp~~~~~l~-~L~~L~l~~N~i~~lp~----- 68 (222)
.+++|+|++|.|+..+. . +.. ..+|++|+|++|.|+. ++..+..++ +|++|+|++|+|+..+.
T Consensus 110 ~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~~~~l~~ 189 (362)
T 3goz_A 110 TITVLDLGWNDFSSKSSSEFKQAFSNLPASITSLNLRGNDLGIKSSDELIQILAAIPANVNSLNLRGNNLASKNCAELAK 189 (362)
T ss_dssp TCCEEECCSSCGGGSCHHHHHHHHTTSCTTCCEEECTTSCGGGSCHHHHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHH
T ss_pred CccEEECcCCcCCcHHHHHHHHHHHhCCCceeEEEccCCcCCHHHHHHHHHHHhcCCccccEeeecCCCCchhhHHHHHH
Confidence 56777777777775532 2 333 2577777777777773 443444554 77777777777764432
Q ss_pred hhhCC-CCCceeeccCCccCCCcch---HhhcC-CCCCCEEEeeCCCCCCchh-HHHHHHHhCCccccccC
Q 027557 69 ELAFN-KKLQNLDLGKNLITRWSEL---KVLKS-LVSLNNLNLQGNPVAEYDK-LAKKVKNLLPSLHIFNA 133 (222)
Q Consensus 69 ~~~~l-~~L~~L~L~~N~i~~~~~~---~~~~~-l~~L~~L~l~~N~l~~~~~-~~~~~~~~l~~L~~l~~ 133 (222)
.+..+ ++|++|+|++|.|+..... ..+.. .++|++|++++|++...+. ....+...+++|+.|+.
T Consensus 190 ~l~~~~~~L~~L~Ls~N~i~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~~~~l~~L~~L~L 260 (362)
T 3goz_A 190 FLASIPASVTSLDLSANLLGLKSYAELAYIFSSIPNHVVSLNLCLNCLHGPSLENLKLLKDSLKHLQTVYL 260 (362)
T ss_dssp HHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHHSCTTCCEEECCSSCCCCCCHHHHHHTTTTTTTCSEEEE
T ss_pred HHHhCCCCCCEEECCCCCCChhHHHHHHHHHhcCCCCceEEECcCCCCCcHHHHHHHHHHhcCCCccEEEe
Confidence 23344 4777777777777662210 13444 3477777777777766532 11222334555555544
No 136
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=99.23 E-value=7.6e-12 Score=106.17 Aligned_cols=130 Identities=14% Similarity=0.087 Sum_probs=83.2
Q ss_pred CccEEEeecCCCcc-----chhhhcCCCCCcEEEcccCCCccc-----ccc-ccCCccCCEEecccCcCCc-----Cchh
Q 027557 6 RDCPAVLSRNPIRE-----IGDSLLNMKAITKLSLSNCQVQII-----GSS-LKSCTELKELRLAHNDIKT-----LPAE 69 (222)
Q Consensus 6 ~~~~L~L~~n~l~~-----lp~~~~~l~~L~~L~L~~n~i~~l-----p~~-~~~l~~L~~L~l~~N~i~~-----lp~~ 69 (222)
.+++|+|++|.++. ++..+..+++|+.|++++|.|+.. ... +..+++|++|++++|.++. ++..
T Consensus 200 ~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~ 279 (461)
T 1z7x_W 200 QLEALKLESCGVTSDNCRDLCGIVASKASLRELALGSNKLGDVGMAELCPGLLHPSSRLRTLWIWECGITAKGCGDLCRV 279 (461)
T ss_dssp CCCEEECTTSCCBTTHHHHHHHHHHHCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHH
T ss_pred CceEEEccCCCCcHHHHHHHHHHHHhCCCccEEeccCCcCChHHHHHHHHHHhcCCCCceEEECcCCCCCHHHHHHHHHH
Confidence 56777777777775 455666777888888888877662 122 3357778888888887775 5556
Q ss_pred hhCCCCCceeeccCCccCCCcchHhhc-----CCCCCCEEEeeCCCCCCch-hHHHHHHHhCCccccccCCCC
Q 027557 70 LAFNKKLQNLDLGKNLITRWSELKVLK-----SLVSLNNLNLQGNPVAEYD-KLAKKVKNLLPSLHIFNARPI 136 (222)
Q Consensus 70 ~~~l~~L~~L~L~~N~i~~~~~~~~~~-----~l~~L~~L~l~~N~l~~~~-~~~~~~~~~l~~L~~l~~~~~ 136 (222)
+..+++|++|++++|.|.+... ..+. ..++|+.|++++|.+.... ......+..+++|+.|+....
T Consensus 280 l~~~~~L~~L~Ls~n~i~~~~~-~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n 351 (461)
T 1z7x_W 280 LRAKESLKELSLAGNELGDEGA-RLLCETLLEPGCQLESLWVKSCSFTAACCSHFSSVLAQNRFLLELQISNN 351 (461)
T ss_dssp HHHCTTCCEEECTTCCCHHHHH-HHHHHHHTSTTCCCCEEECTTSCCBGGGHHHHHHHHHHCSSCCEEECCSS
T ss_pred HhhCCCcceEECCCCCCchHHH-HHHHHHhccCCccceeeEcCCCCCchHHHHHHHHHHhhCCCccEEEccCC
Confidence 6677788888888887764322 1222 2257777777777776542 122234456677777665543
No 137
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=99.21 E-value=2e-11 Score=103.54 Aligned_cols=127 Identities=18% Similarity=0.207 Sum_probs=59.7
Q ss_pred ccEEEeecCCCc-----cchhhhcCCCCCcEEEcccCCCccc-ccc-ccCCc----cCCEEecccCcCC-----cCchhh
Q 027557 7 DCPAVLSRNPIR-----EIGDSLLNMKAITKLSLSNCQVQII-GSS-LKSCT----ELKELRLAHNDIK-----TLPAEL 70 (222)
Q Consensus 7 ~~~L~L~~n~l~-----~lp~~~~~l~~L~~L~L~~n~i~~l-p~~-~~~l~----~L~~L~l~~N~i~-----~lp~~~ 70 (222)
+++|+|++|.++ .++..+..+++|++|+|++|.|+.. +.. +..++ +|++|++++|.|+ .+|..+
T Consensus 30 L~~L~L~~~~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~L~~n~i~~~~~~~l~~~l 109 (461)
T 1z7x_W 30 CQVVRLDDCGLTEARCKDISSALRVNPALAELNLRSNELGDVGVHCVLQGLQTPSCKIQKLSLQNCCLTGAGCGVLSSTL 109 (461)
T ss_dssp CSEEEEESSCCCHHHHHHHHHHHHTCTTCCEEECTTCCCHHHHHHHHHHTTCSTTCCCCEEECTTSCCBGGGHHHHHHHT
T ss_pred ccEEEccCCCCCHHHHHHHHHHHHhCCCcCEEeCCCCcCChHHHHHHHHHHhhCCCceeEEEccCCCCCHHHHHHHHHHH
Confidence 455666666655 2344555556666666666665541 111 22233 4666666666655 234445
Q ss_pred hCCCCCceeeccCCccCCCcchHh-----hcCCCCCCEEEeeCCCCCCch-hHHHHHHHhCCccccccCC
Q 027557 71 AFNKKLQNLDLGKNLITRWSELKV-----LKSLVSLNNLNLQGNPVAEYD-KLAKKVKNLLPSLHIFNAR 134 (222)
Q Consensus 71 ~~l~~L~~L~L~~N~i~~~~~~~~-----~~~l~~L~~L~l~~N~l~~~~-~~~~~~~~~l~~L~~l~~~ 134 (222)
..+++|++|+|++|.|..... .. ....++|++|++++|.+.... ......+..+++|+.|+..
T Consensus 110 ~~~~~L~~L~Ls~n~i~~~~~-~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~L~ 178 (461)
T 1z7x_W 110 RTLPTLQELHLSDNLLGDAGL-QLLCEGLLDPQCRLEKLQLEYCSLSAASCEPLASVLRAKPDFKELTVS 178 (461)
T ss_dssp TSCTTCCEEECCSSBCHHHHH-HHHHHHHTSTTCCCCEEECTTSCCBGGGHHHHHHHHHHCTTCCEEECC
T ss_pred ccCCceeEEECCCCcCchHHH-HHHHHHHhcCCCcceEEECCCCCCCHHHHHHHHHHHhhCCCCCEEECc
Confidence 555566666666665543211 11 111334555555555544322 1112233344555555443
No 138
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=99.12 E-value=4.2e-11 Score=99.50 Aligned_cols=130 Identities=20% Similarity=0.148 Sum_probs=76.5
Q ss_pred CccEEEeecCCCccch-hhh-cCCCCCcEEEcccCCCccccc-----cc-cCCccCCEEecccCcCCc-----CchhhhC
Q 027557 6 RDCPAVLSRNPIREIG-DSL-LNMKAITKLSLSNCQVQIIGS-----SL-KSCTELKELRLAHNDIKT-----LPAELAF 72 (222)
Q Consensus 6 ~~~~L~L~~n~l~~lp-~~~-~~l~~L~~L~L~~n~i~~lp~-----~~-~~l~~L~~L~l~~N~i~~-----lp~~~~~ 72 (222)
.+++|+|++|.|+... ..+ ..+.+|+.|+|++|.|+.... .+ ...++|++|+|++|.|+. ++..+..
T Consensus 102 ~L~~L~Ls~n~l~~~~~~~l~~~L~~L~~L~Ls~n~l~~~~~~~L~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~ 181 (372)
T 3un9_A 102 ALDEVNLASCQLDPAGLRTLLPVFLRARKLGLQLNSLGPEACKDLRDLLLHDQCQITTLRLSNNPLTAAGVAVLMEGLAG 181 (372)
T ss_dssp CEEEEECTTCCCCHHHHHHTHHHHHTEEEEECCSSCCCHHHHHHHHHHHHSTTCCCCEEECCSSCCHHHHHHHHHHHHHT
T ss_pred CceEEEecCCCCCHHHHHHHHHHHHhccHhhcCCCCCCHHHHHHHHHHHHhcCCccceeeCCCCCCChHHHHHHHHHHhc
Confidence 4567777777776321 122 234567777777777765221 11 235667777777777763 3334566
Q ss_pred CCCCceeeccCCccCCCcc--h-HhhcCCCCCCEEEeeCCCCCCchh-HHHHHHHhCCccccccCCC
Q 027557 73 NKKLQNLDLGKNLITRWSE--L-KVLKSLVSLNNLNLQGNPVAEYDK-LAKKVKNLLPSLHIFNARP 135 (222)
Q Consensus 73 l~~L~~L~L~~N~i~~~~~--~-~~~~~l~~L~~L~l~~N~l~~~~~-~~~~~~~~l~~L~~l~~~~ 135 (222)
+++|++|+|++|.|++... + ..+..+++|+.|+|++|.|..... .....+...++|+.|+...
T Consensus 182 ~~~L~~L~Ls~N~l~~~g~~~L~~~L~~~~~L~~L~Ls~N~i~~~g~~~l~~~L~~~~~L~~L~Ls~ 248 (372)
T 3un9_A 182 NTSVTHLSLLHTGLGDEGLELLAAQLDRNRQLQELNVAYNGAGDTAALALARAAREHPSLELLHLYF 248 (372)
T ss_dssp CSSCCEEECTTSSCHHHHHHHHHHHGGGCSCCCEEECCSSCCCHHHHHHHHHHHHHCSSCCEEECTT
T ss_pred CCCcCEEeCCCCCCCcHHHHHHHHHHhcCCCcCeEECCCCCCCHHHHHHHHHHHHhCCCCCEEeccC
Confidence 7777777777777765321 0 345666777777777777765432 2223344567777665543
No 139
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=99.08 E-value=1.8e-10 Score=93.85 Aligned_cols=100 Identities=16% Similarity=0.179 Sum_probs=73.6
Q ss_pred CCCCCcEEEcccCCCcccccc-ccCCccCCEEecccCcCCcCchh-hhCCCCCc-eeeccCCccCCCcchHhhcCCCCCC
Q 027557 26 NMKAITKLSLSNCQVQIIGSS-LKSCTELKELRLAHNDIKTLPAE-LAFNKKLQ-NLDLGKNLITRWSELKVLKSLVSLN 102 (222)
Q Consensus 26 ~l~~L~~L~L~~n~i~~lp~~-~~~l~~L~~L~l~~N~i~~lp~~-~~~l~~L~-~L~L~~N~i~~~~~~~~~~~l~~L~ 102 (222)
.+++|+.|+|++|.++.+|.. |..+.+|+.+++++| ++.++.. |.++.+|+ .+++.+ .+..++. ..|.+|++|+
T Consensus 224 ~~~~L~~l~L~~n~i~~I~~~aF~~~~~L~~l~l~~n-i~~I~~~aF~~~~~L~~~l~l~~-~l~~I~~-~aF~~c~~L~ 300 (329)
T 3sb4_A 224 YMPNLVSLDISKTNATTIPDFTFAQKKYLLKIKLPHN-LKTIGQRVFSNCGRLAGTLELPA-SVTAIEF-GAFMGCDNLR 300 (329)
T ss_dssp HCTTCCEEECTTBCCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCEEEEECT-TCCEECT-TTTTTCTTEE
T ss_pred hcCCCeEEECCCCCcceecHhhhhCCCCCCEEECCcc-cceehHHHhhCChhccEEEEEcc-cceEEch-hhhhCCccCC
Confidence 367888888888888887766 777888888888877 7777554 77788887 888877 6776665 6788888888
Q ss_pred EEEeeCCCCCCchhHHHHHHHhCCccccc
Q 027557 103 NLNLQGNPVAEYDKLAKKVKNLLPSLHIF 131 (222)
Q Consensus 103 ~L~l~~N~l~~~~~~~~~~~~~l~~L~~l 131 (222)
.+++.+|.+..++.. .+..+++|+.+
T Consensus 301 ~l~l~~n~i~~I~~~---aF~~~~~L~~l 326 (329)
T 3sb4_A 301 YVLATGDKITTLGDE---LFGNGVPSKLI 326 (329)
T ss_dssp EEEECSSCCCEECTT---TTCTTCCCCEE
T ss_pred EEEeCCCccCccchh---hhcCCcchhhh
Confidence 888888877777653 33456666654
No 140
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=99.07 E-value=1.1e-10 Score=97.02 Aligned_cols=110 Identities=26% Similarity=0.246 Sum_probs=87.4
Q ss_pred CccEEEeecCCCccch-----hhh-cCCCCCcEEEcccCCCcc-----ccccccCCccCCEEecccCcCCcC-----chh
Q 027557 6 RDCPAVLSRNPIREIG-----DSL-LNMKAITKLSLSNCQVQI-----IGSSLKSCTELKELRLAHNDIKTL-----PAE 69 (222)
Q Consensus 6 ~~~~L~L~~n~l~~lp-----~~~-~~l~~L~~L~L~~n~i~~-----lp~~~~~l~~L~~L~l~~N~i~~l-----p~~ 69 (222)
.+++|+|++|.|+..+ ..+ ...+.|+.|+|++|.|+. ++..+..+++|++|+|++|.|+.. +..
T Consensus 127 ~L~~L~Ls~n~l~~~~~~~L~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~L~~L~Ls~N~l~~~g~~~L~~~ 206 (372)
T 3un9_A 127 RARKLGLQLNSLGPEACKDLRDLLLHDQCQITTLRLSNNPLTAAGVAVLMEGLAGNTSVTHLSLLHTGLGDEGLELLAAQ 206 (372)
T ss_dssp TEEEEECCSSCCCHHHHHHHHHHHHSTTCCCCEEECCSSCCHHHHHHHHHHHHHTCSSCCEEECTTSSCHHHHHHHHHHH
T ss_pred hccHhhcCCCCCCHHHHHHHHHHHHhcCCccceeeCCCCCCChHHHHHHHHHHhcCCCcCEEeCCCCCCCcHHHHHHHHH
Confidence 4689999999998543 223 357899999999999976 444567889999999999999843 345
Q ss_pred hhCCCCCceeeccCCccCCCcc--h-HhhcCCCCCCEEEeeCCCCCCch
Q 027557 70 LAFNKKLQNLDLGKNLITRWSE--L-KVLKSLVSLNNLNLQGNPVAEYD 115 (222)
Q Consensus 70 ~~~l~~L~~L~L~~N~i~~~~~--~-~~~~~l~~L~~L~l~~N~l~~~~ 115 (222)
+...++|+.|+|++|.|+.... + ..+...++|++|+|++|+|....
T Consensus 207 L~~~~~L~~L~Ls~N~i~~~g~~~l~~~L~~~~~L~~L~Ls~N~i~~~g 255 (372)
T 3un9_A 207 LDRNRQLQELNVAYNGAGDTAALALARAAREHPSLELLHLYFNELSSEG 255 (372)
T ss_dssp GGGCSCCCEEECCSSCCCHHHHHHHHHHHHHCSSCCEEECTTSSCCHHH
T ss_pred HhcCCCcCeEECCCCCCCHHHHHHHHHHHHhCCCCCEEeccCCCCCHHH
Confidence 6778899999999999987432 1 34567899999999999998754
No 141
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=99.06 E-value=2.2e-10 Score=93.35 Aligned_cols=78 Identities=21% Similarity=0.215 Sum_probs=64.2
Q ss_pred CccCCEEecccCcCCcCchh-hhCCCCCceeeccCCccCCCcchHhhcCCCCCC-EEEeeCCCCCCchhHHHHHHHhCCc
Q 027557 50 CTELKELRLAHNDIKTLPAE-LAFNKKLQNLDLGKNLITRWSELKVLKSLVSLN-NLNLQGNPVAEYDKLAKKVKNLLPS 127 (222)
Q Consensus 50 l~~L~~L~l~~N~i~~lp~~-~~~l~~L~~L~L~~N~i~~~~~~~~~~~l~~L~-~L~l~~N~l~~~~~~~~~~~~~l~~ 127 (222)
+++|+.+++++|.++.+|.. |..+.+|+.++|.+| +..++. ..|.++.+|+ .+.+.+ .+..++.. .+..|++
T Consensus 225 ~~~L~~l~L~~n~i~~I~~~aF~~~~~L~~l~l~~n-i~~I~~-~aF~~~~~L~~~l~l~~-~l~~I~~~---aF~~c~~ 298 (329)
T 3sb4_A 225 MPNLVSLDISKTNATTIPDFTFAQKKYLLKIKLPHN-LKTIGQ-RVFSNCGRLAGTLELPA-SVTAIEFG---AFMGCDN 298 (329)
T ss_dssp CTTCCEEECTTBCCCEECTTTTTTCTTCCEEECCTT-CCEECT-TTTTTCTTCCEEEEECT-TCCEECTT---TTTTCTT
T ss_pred cCCCeEEECCCCCcceecHhhhhCCCCCCEEECCcc-cceehH-HHhhCChhccEEEEEcc-cceEEchh---hhhCCcc
Confidence 67899999999999988765 888999999999988 888776 7899999999 999987 67776654 4457888
Q ss_pred cccccC
Q 027557 128 LHIFNA 133 (222)
Q Consensus 128 L~~l~~ 133 (222)
|+.++.
T Consensus 299 L~~l~l 304 (329)
T 3sb4_A 299 LRYVLA 304 (329)
T ss_dssp EEEEEE
T ss_pred CCEEEe
Confidence 887765
No 142
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=99.06 E-value=1.3e-10 Score=87.22 Aligned_cols=117 Identities=20% Similarity=0.236 Sum_probs=81.0
Q ss_pred hhhhcCCCCCcEEEcccC-CCcc-----ccccccCCccCCEEecccCcCCc-----CchhhhCCCCCceeeccCCccCCC
Q 027557 21 GDSLLNMKAITKLSLSNC-QVQI-----IGSSLKSCTELKELRLAHNDIKT-----LPAELAFNKKLQNLDLGKNLITRW 89 (222)
Q Consensus 21 p~~~~~l~~L~~L~L~~n-~i~~-----lp~~~~~l~~L~~L~l~~N~i~~-----lp~~~~~l~~L~~L~L~~N~i~~~ 89 (222)
...+...+.|+.|+|++| .|.. +...+...++|++|+|++|.|.. +...+...++|++|+|++|.|..-
T Consensus 29 ~~~l~~~~~L~~L~L~~n~~i~~~g~~~l~~~L~~~~~L~~L~Ls~n~i~~~g~~~l~~~L~~n~~L~~L~L~~N~i~~~ 108 (185)
T 1io0_A 29 KRIQNNDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFISGS 108 (185)
T ss_dssp HHHHTTCTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCCHH
T ss_pred HHHHhcCCCCCEEEecCCCCCCHHHHHHHHHHHHhCCCcCEEECcCCCCChHHHHHHHHHHHhCCCcCEEECcCCcCCHH
Confidence 345667888888888888 8765 44456667888888888888873 233455667888888888888763
Q ss_pred cc---hHhhcCCCCCCEEEe--eCCCCCCch-hHHHHHHHhCCccccccCCCCC
Q 027557 90 SE---LKVLKSLVSLNNLNL--QGNPVAEYD-KLAKKVKNLLPSLHIFNARPIN 137 (222)
Q Consensus 90 ~~---~~~~~~l~~L~~L~l--~~N~l~~~~-~~~~~~~~~l~~L~~l~~~~~~ 137 (222)
.. ...+...+.|++|++ ++|.|.... ......+...+.|+.|+.....
T Consensus 109 g~~~l~~~L~~n~~L~~L~L~~~~N~i~~~g~~~l~~~L~~n~~L~~L~L~~n~ 162 (185)
T 1io0_A 109 GILALVEALQSNTSLIELRIDNQSQPLGNNVEMEIANMLEKNTTLLKFGYHFTQ 162 (185)
T ss_dssp HHHHHHHGGGGCSSCCEEECCCCSSCCCHHHHHHHHHHHHHCSSCCEEECCCSS
T ss_pred HHHHHHHHHHhCCCceEEEecCCCCCCCHHHHHHHHHHHHhCCCcCEEeccCCC
Confidence 21 135667788888888 778887643 2233455567788888775443
No 143
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=98.85 E-value=8.1e-10 Score=87.44 Aligned_cols=95 Identities=24% Similarity=0.264 Sum_probs=72.8
Q ss_pred EEeecCCCccchhh----hcCCCCCcEEEcccCCCcccc---ccccCCccCCEEecccCcCCcCchhhhCCC--CCceee
Q 027557 10 AVLSRNPIREIGDS----LLNMKAITKLSLSNCQVQIIG---SSLKSCTELKELRLAHNDIKTLPAELAFNK--KLQNLD 80 (222)
Q Consensus 10 L~L~~n~l~~lp~~----~~~l~~L~~L~L~~n~i~~lp---~~~~~l~~L~~L~l~~N~i~~lp~~~~~l~--~L~~L~ 80 (222)
++++.|....++.. ..++++|+.|+|++|.|+.++ ..+..+++|+.|+|++|+|+.+ ..+..+. +|+.|+
T Consensus 148 l~l~~N~~~~~~~~l~i~~~~l~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N~i~~~-~~l~~l~~l~L~~L~ 226 (267)
T 3rw6_A 148 IDVVLNRRSCMAATLRIIEENIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSE-RELDKIKGLKLEELW 226 (267)
T ss_dssp CCCCTTSHHHHHHHHHHHHHHCTTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTSCCCSG-GGGGGGTTSCCSEEE
T ss_pred ccccCCHHHHHHHHHHHHHhhCCCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCCccCCc-hhhhhcccCCcceEE
Confidence 55677765555432 256899999999999999866 3356899999999999999977 3444444 999999
Q ss_pred ccCCccCC-Ccc-----hHhhcCCCCCCEEE
Q 027557 81 LGKNLITR-WSE-----LKVLKSLVSLNNLN 105 (222)
Q Consensus 81 L~~N~i~~-~~~-----~~~~~~l~~L~~L~ 105 (222)
|++|.+.. ++. ...+..+++|+.|+
T Consensus 227 L~~Npl~~~~~~~~~y~~~il~~~P~L~~LD 257 (267)
T 3rw6_A 227 LDGNSLCDTFRDQSTYISAIRERFPKLLRLD 257 (267)
T ss_dssp CTTSTTGGGCSSHHHHHHHHHHHCTTCCEES
T ss_pred ccCCcCccccCcchhHHHHHHHHCcccCeEC
Confidence 99999975 321 13577899999887
No 144
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=98.85 E-value=1.3e-08 Score=76.18 Aligned_cols=110 Identities=18% Similarity=0.139 Sum_probs=88.4
Q ss_pred CCccEEEeecC-CCcc-----chhhhcCCCCCcEEEcccCCCcc-----ccccccCCccCCEEecccCcCCc-----Cch
Q 027557 5 IRDCPAVLSRN-PIRE-----IGDSLLNMKAITKLSLSNCQVQI-----IGSSLKSCTELKELRLAHNDIKT-----LPA 68 (222)
Q Consensus 5 ~~~~~L~L~~n-~l~~-----lp~~~~~l~~L~~L~L~~n~i~~-----lp~~~~~l~~L~~L~l~~N~i~~-----lp~ 68 (222)
-.+++|+|++| .|.. +...+...++|++|+|++|.|.. +...+...++|++|+|++|.|+. +..
T Consensus 36 ~~L~~L~L~~n~~i~~~g~~~l~~~L~~~~~L~~L~Ls~n~i~~~g~~~l~~~L~~n~~L~~L~L~~N~i~~~g~~~l~~ 115 (185)
T 1io0_A 36 PDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFISGSGILALVE 115 (185)
T ss_dssp TTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCCHHHHHHHHH
T ss_pred CCCCEEEecCCCCCCHHHHHHHHHHHHhCCCcCEEECcCCCCChHHHHHHHHHHHhCCCcCEEECcCCcCCHHHHHHHHH
Confidence 45789999999 8873 45677888999999999999986 44456677899999999999985 344
Q ss_pred hhhCCCCCceeec--cCCccCCCcc--h-HhhcCCCCCCEEEeeCCCCCCc
Q 027557 69 ELAFNKKLQNLDL--GKNLITRWSE--L-KVLKSLVSLNNLNLQGNPVAEY 114 (222)
Q Consensus 69 ~~~~l~~L~~L~L--~~N~i~~~~~--~-~~~~~l~~L~~L~l~~N~l~~~ 114 (222)
.+...++|++|+| ++|.|..-.. + ..+...++|++|++++|.+...
T Consensus 116 ~L~~n~~L~~L~L~~~~N~i~~~g~~~l~~~L~~n~~L~~L~L~~n~i~~~ 166 (185)
T 1io0_A 116 ALQSNTSLIELRIDNQSQPLGNNVEMEIANMLEKNTTLLKFGYHFTQQGPR 166 (185)
T ss_dssp GGGGCSSCCEEECCCCSSCCCHHHHHHHHHHHHHCSSCCEEECCCSSHHHH
T ss_pred HHHhCCCceEEEecCCCCCCCHHHHHHHHHHHHhCCCcCEEeccCCCCChH
Confidence 5777889999999 8899987321 1 3566779999999999987643
No 145
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=98.79 E-value=5.4e-09 Score=91.26 Aligned_cols=17 Identities=29% Similarity=0.548 Sum_probs=7.9
Q ss_pred hhCCCCCceeeccCCcc
Q 027557 70 LAFNKKLQNLDLGKNLI 86 (222)
Q Consensus 70 ~~~l~~L~~L~L~~N~i 86 (222)
+..+++|++|+|++|.+
T Consensus 289 ~~~~~~L~~L~Ls~~~l 305 (592)
T 3ogk_B 289 FPFAAQIRKLDLLYALL 305 (592)
T ss_dssp GGGGGGCCEEEETTCCC
T ss_pred HhhcCCCcEEecCCCcC
Confidence 33444455555555443
No 146
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=98.77 E-value=7.8e-09 Score=90.28 Aligned_cols=124 Identities=11% Similarity=0.142 Sum_probs=63.3
Q ss_pred ccEEEeecCCCcc-----chhhhcCCCCCcEEEcccCCCcc-----ccccccCCccCCEEecccCcCCcCchhhhCCCCC
Q 027557 7 DCPAVLSRNPIRE-----IGDSLLNMKAITKLSLSNCQVQI-----IGSSLKSCTELKELRLAHNDIKTLPAELAFNKKL 76 (222)
Q Consensus 7 ~~~L~L~~n~l~~-----lp~~~~~l~~L~~L~L~~n~i~~-----lp~~~~~l~~L~~L~l~~N~i~~lp~~~~~l~~L 76 (222)
+++|+|++|.++. ++..+..+++|+.|++++|.++. ++..+..+++|++|++++|.+..+|..+..+++|
T Consensus 166 L~~L~L~~~~~~~~~~~~l~~~~~~~~~L~~L~L~~n~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~l~~~~~~~~~L 245 (592)
T 3ogk_B 166 IKTLLMEESSFSEKDGKWLHELAQHNTSLEVLNFYMTEFAKISPKDLETIARNCRSLVSVKVGDFEILELVGFFKAAANL 245 (592)
T ss_dssp CSEEECTTCEEECCCSHHHHHHHHHCCCCCEEECTTCCCSSCCHHHHHHHHHHCTTCCEEECSSCBGGGGHHHHHHCTTC
T ss_pred CCEEECccccccCcchhHHHHHHhcCCCccEEEeeccCCCccCHHHHHHHHhhCCCCcEEeccCccHHHHHHHHhhhhHH
Confidence 3455555554432 22223345555555555555541 3323345556666666666555555445555555
Q ss_pred ceeeccCC---------------------------ccCCCcchHhhcCCCCCCEEEeeCCCCCCchhHHHHHHHhCCccc
Q 027557 77 QNLDLGKN---------------------------LITRWSELKVLKSLVSLNNLNLQGNPVAEYDKLAKKVKNLLPSLH 129 (222)
Q Consensus 77 ~~L~L~~N---------------------------~i~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~ 129 (222)
+.|++++. ....++. .+..+++|++|++++|.+.... ...++..+++|+
T Consensus 246 ~~L~l~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~l~~--~~~~~~~L~~L~Ls~~~l~~~~--~~~~~~~~~~L~ 321 (592)
T 3ogk_B 246 EEFCGGSLNEDIGMPEKYMNLVFPRKLCRLGLSYMGPNEMPI--LFPFAAQIRKLDLLYALLETED--HCTLIQKCPNLE 321 (592)
T ss_dssp CEEEECBCCCCTTCTTSSSCCCCCTTCCEEEETTCCTTTGGG--GGGGGGGCCEEEETTCCCCHHH--HHHHHTTCTTCC
T ss_pred HhhcccccccccchHHHHHHhhccccccccCccccchhHHHH--HHhhcCCCcEEecCCCcCCHHH--HHHHHHhCcCCC
Confidence 55555421 1122222 4556778888888888754322 122345667776
Q ss_pred cccCC
Q 027557 130 IFNAR 134 (222)
Q Consensus 130 ~l~~~ 134 (222)
.|+..
T Consensus 322 ~L~L~ 326 (592)
T 3ogk_B 322 VLETR 326 (592)
T ss_dssp EEEEE
T ss_pred EEecc
Confidence 66554
No 147
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=98.66 E-value=8e-08 Score=71.06 Aligned_cols=102 Identities=20% Similarity=0.261 Sum_probs=77.4
Q ss_pred CCCCcEEEcccCCCcc--ccccccCCccCCEEecccCc-CCcCc-hhhhCC----CCCceeeccCCc-cCCCcchHhhcC
Q 027557 27 MKAITKLSLSNCQVQI--IGSSLKSCTELKELRLAHND-IKTLP-AELAFN----KKLQNLDLGKNL-ITRWSELKVLKS 97 (222)
Q Consensus 27 l~~L~~L~L~~n~i~~--lp~~~~~l~~L~~L~l~~N~-i~~lp-~~~~~l----~~L~~L~L~~N~-i~~~~~~~~~~~ 97 (222)
-..|+.||+++|.|+. +. .+..+++|++|+|+++. |++-. ..+..+ ++|++|+|+++. |++-. +..+..
T Consensus 60 ~~~L~~LDLs~~~Itd~GL~-~L~~~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~ITD~G-l~~L~~ 137 (176)
T 3e4g_A 60 KYKIQAIDATDSCIMSIGFD-HMEGLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGNVTDKG-IIALHH 137 (176)
T ss_dssp CCCEEEEEEESCCCCGGGGG-GGTTCSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCTTCCHHH-HHHGGG
T ss_pred CceEeEEeCcCCCccHHHHH-HhcCCCCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCCcCCHHH-HHHHhc
Confidence 3579999999999887 33 47889999999999995 77321 235554 479999999984 87743 467889
Q ss_pred CCCCCEEEeeCCC-CCCchhHHHHHHHhCCcccc
Q 027557 98 LVSLNNLNLQGNP-VAEYDKLAKKVKNLLPSLHI 130 (222)
Q Consensus 98 l~~L~~L~l~~N~-l~~~~~~~~~~~~~l~~L~~ 130 (222)
+++|++|++++++ +++..-....+...+|++++
T Consensus 138 ~~~L~~L~L~~c~~Itd~gl~~~~L~~~lP~l~V 171 (176)
T 3e4g_A 138 FRNLKYLFLSDLPGVKEKEKIVQAFKTSLPSLEL 171 (176)
T ss_dssp CTTCCEEEEESCTTCCCHHHHHHHHHHHCTTCEE
T ss_pred CCCCCEEECCCCCCCCchHHHHHHHHHHCCCcEE
Confidence 9999999999987 66654445556678898864
No 148
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=98.66 E-value=2.3e-08 Score=87.22 Aligned_cols=127 Identities=12% Similarity=0.122 Sum_probs=84.4
Q ss_pred CccEEEeecCCCccc-hhhhc-CCCCCcEEEcc--c----CCCcccc------ccccCCccCCEEecccCcCCc-Cchhh
Q 027557 6 RDCPAVLSRNPIREI-GDSLL-NMKAITKLSLS--N----CQVQIIG------SSLKSCTELKELRLAHNDIKT-LPAEL 70 (222)
Q Consensus 6 ~~~~L~L~~n~l~~l-p~~~~-~l~~L~~L~L~--~----n~i~~lp------~~~~~l~~L~~L~l~~N~i~~-lp~~~ 70 (222)
.+++|.++.|.++.. ...+. .+++|+.|+|+ + |.++..| ..+..+++|++|++++ .++. .+..+
T Consensus 373 ~L~~L~~~~~~l~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~~~l~~~~~~L~~L~L~~-~l~~~~~~~l 451 (594)
T 2p1m_B 373 KLESVLYFCRQMTNAALITIARNRPNMTRFRLCIIEPKAPDYLTLEPLDIGFGAIVEHCKDLRRLSLSG-LLTDKVFEYI 451 (594)
T ss_dssp TCCEEEEEESCCCHHHHHHHHHHCTTCCEEEEEESSTTCCCTTTCCCTHHHHHHHHHHCTTCCEEECCS-SCCHHHHHHH
T ss_pred hHHHHHHhcCCcCHHHHHHHHhhCCCcceeEeecccCCCcccccCCchhhHHHHHHhhCCCccEEeecC-cccHHHHHHH
Confidence 467888888888843 23443 58899999998 4 5676432 2256678899999977 5552 22334
Q ss_pred hC-CCCCceeeccCCccCCCcchHhh-cCCCCCCEEEeeCCCCCCchhHHHHHHHhCCccccccCCCC
Q 027557 71 AF-NKKLQNLDLGKNLITRWSELKVL-KSLVSLNNLNLQGNPVAEYDKLAKKVKNLLPSLHIFNARPI 136 (222)
Q Consensus 71 ~~-l~~L~~L~L~~N~i~~~~~~~~~-~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~l~~~~~ 136 (222)
.. +++|+.|+|++|.+++... ..+ ..+++|+.|++++|++.... ...+...+++|+.|+....
T Consensus 452 ~~~~~~L~~L~L~~~~i~~~~~-~~l~~~~~~L~~L~L~~n~~~~~~--~~~~~~~l~~L~~L~l~~~ 516 (594)
T 2p1m_B 452 GTYAKKMEMLSVAFAGDSDLGM-HHVLSGCDSLRKLEIRDCPFGDKA--LLANASKLETMRSLWMSSC 516 (594)
T ss_dssp HHHCTTCCEEEEESCCSSHHHH-HHHHHHCTTCCEEEEESCSCCHHH--HHHTGGGGGGSSEEEEESS
T ss_pred HHhchhccEeeccCCCCcHHHH-HHHHhcCCCcCEEECcCCCCcHHH--HHHHHHhCCCCCEEeeeCC
Confidence 44 7889999999888865332 233 66888999999999883321 2223445788887765443
No 149
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=98.57 E-value=4.3e-08 Score=85.56 Aligned_cols=125 Identities=14% Similarity=0.140 Sum_probs=73.9
Q ss_pred CccEEEeec---------CCCccch-hhh-cCCCCCcEEEcccCCCcccc-ccc-cCCccCCEEecc--c----CcCCcC
Q 027557 6 RDCPAVLSR---------NPIREIG-DSL-LNMKAITKLSLSNCQVQIIG-SSL-KSCTELKELRLA--H----NDIKTL 66 (222)
Q Consensus 6 ~~~~L~L~~---------n~l~~lp-~~~-~~l~~L~~L~L~~n~i~~lp-~~~-~~l~~L~~L~l~--~----N~i~~l 66 (222)
.+++|+|++ +.++... ..+ ..+++|+.|.+++|.++... ..+ ..+++|+.|+++ + |.++..
T Consensus 339 ~L~~L~L~~~~~~g~~~~~~l~~~~l~~l~~~~~~L~~L~~~~~~l~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~l~~~ 418 (594)
T 2p1m_B 339 DLRELRVFPSEPFVMEPNVALTEQGLVSVSMGCPKLESVLYFCRQMTNAALITIARNRPNMTRFRLCIIEPKAPDYLTLE 418 (594)
T ss_dssp TCCEEEEECSCTTCSSCSSCCCHHHHHHHHHHCTTCCEEEEEESCCCHHHHHHHHHHCTTCCEEEEEESSTTCCCTTTCC
T ss_pred CCCEEEEecCcccccccCCCCCHHHHHHHHHhchhHHHHHHhcCCcCHHHHHHHHhhCCCcceeEeecccCCCcccccCC
Confidence 356777733 4455321 222 34778888888778777622 123 357788888887 3 556543
Q ss_pred ch------hhhCCCCCceeeccCCccCCCcchHhhcC-CCCCCEEEeeCCCCCCchhHHHHHHHhCCccccccCC
Q 027557 67 PA------ELAFNKKLQNLDLGKNLITRWSELKVLKS-LVSLNNLNLQGNPVAEYDKLAKKVKNLLPSLHIFNAR 134 (222)
Q Consensus 67 p~------~~~~l~~L~~L~L~~N~i~~~~~~~~~~~-l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~l~~~ 134 (222)
|. .+..+++|+.|+|++ .+++.. +..+.. +++|+.|++++|.+++.. ...+...+++|+.|+..
T Consensus 419 ~~~~~~~~l~~~~~~L~~L~L~~-~l~~~~-~~~l~~~~~~L~~L~L~~~~i~~~~--~~~l~~~~~~L~~L~L~ 489 (594)
T 2p1m_B 419 PLDIGFGAIVEHCKDLRRLSLSG-LLTDKV-FEYIGTYAKKMEMLSVAFAGDSDLG--MHHVLSGCDSLRKLEIR 489 (594)
T ss_dssp CTHHHHHHHHHHCTTCCEEECCS-SCCHHH-HHHHHHHCTTCCEEEEESCCSSHHH--HHHHHHHCTTCCEEEEE
T ss_pred chhhHHHHHHhhCCCccEEeecC-cccHHH-HHHHHHhchhccEeeccCCCCcHHH--HHHHHhcCCCcCEEECc
Confidence 21 255677888888866 454422 134444 778888888888775432 22233567777777554
No 150
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=98.57 E-value=1.8e-07 Score=78.36 Aligned_cols=125 Identities=14% Similarity=0.201 Sum_probs=68.8
Q ss_pred cCCCccEEEeecCCCccchh-hhcCCCCCcEEEcccCCCccccccccCCccCCEEecccCcCCcCchh-hhCCCCCceee
Q 027557 3 FGIRDCPAVLSRNPIREIGD-SLLNMKAITKLSLSNCQVQIIGSSLKSCTELKELRLAHNDIKTLPAE-LAFNKKLQNLD 80 (222)
Q Consensus 3 ~~~~~~~L~L~~n~l~~lp~-~~~~l~~L~~L~L~~n~i~~lp~~~~~l~~L~~L~l~~N~i~~lp~~-~~~l~~L~~L~ 80 (222)
++..++.+.|.. .++.|+. .|.++.+|+.++|++|.++.++.......+|+.+.+..+ ++.++.. |..+++|+.+.
T Consensus 155 ~~~~L~~i~lp~-~l~~I~~~aF~~c~~L~~l~l~~n~l~~I~~~aF~~~~L~~l~lp~~-l~~I~~~aF~~~~~L~~l~ 232 (401)
T 4fdw_A 155 FNSTVQEIVFPS-TLEQLKEDIFYYCYNLKKADLSKTKITKLPASTFVYAGIEEVLLPVT-LKEIGSQAFLKTSQLKTIE 232 (401)
T ss_dssp TTCCCCEEECCT-TCCEECSSTTTTCTTCCEEECTTSCCSEECTTTTTTCCCSEEECCTT-CCEECTTTTTTCTTCCCEE
T ss_pred CCCCceEEEeCC-CccEehHHHhhCcccCCeeecCCCcceEechhhEeecccCEEEeCCc-hheehhhHhhCCCCCCEEe
Confidence 344455566654 5566643 566677777777777666666655222455555555533 4444332 44555555555
Q ss_pred ccC---------------------CccCCCcchHhhcCCCCCCEEEeeCCCCC-----CchhHHHHHHHhCCccccccC
Q 027557 81 LGK---------------------NLITRWSELKVLKSLVSLNNLNLQGNPVA-----EYDKLAKKVKNLLPSLHIFNA 133 (222)
Q Consensus 81 L~~---------------------N~i~~~~~~~~~~~l~~L~~L~l~~N~l~-----~~~~~~~~~~~~l~~L~~l~~ 133 (222)
+.. +.+..++. ..|..|++|+.+.+.+|.+. .++.+ .+..|++|+.+..
T Consensus 233 l~~~l~~I~~~aF~~~~L~~i~lp~~i~~I~~-~aF~~c~~L~~l~l~~~~~~~~~~~~I~~~---aF~~c~~L~~l~l 307 (401)
T 4fdw_A 233 IPENVSTIGQEAFRESGITTVKLPNGVTNIAS-RAFYYCPELAEVTTYGSTFNDDPEAMIHPY---CLEGCPKLARFEI 307 (401)
T ss_dssp CCTTCCEECTTTTTTCCCSEEEEETTCCEECT-TTTTTCTTCCEEEEESSCCCCCTTCEECTT---TTTTCTTCCEECC
T ss_pred cCCCccCccccccccCCccEEEeCCCccEECh-hHhhCCCCCCEEEeCCccccCCcccEECHH---HhhCCccCCeEEe
Confidence 543 23444443 56777777777777776554 23322 3345666665544
No 151
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*
Probab=98.57 E-value=3.9e-08 Score=69.39 Aligned_cols=63 Identities=21% Similarity=0.250 Sum_probs=51.2
Q ss_pred CEEecccCcCC--cCchhhhCCCCCceeeccCCccCCCcchHhhcCCCCCCEEEeeCCCCCCchhHHH
Q 027557 54 KELRLAHNDIK--TLPAELAFNKKLQNLDLGKNLITRWSELKVLKSLVSLNNLNLQGNPVAEYDKLAK 119 (222)
Q Consensus 54 ~~L~l~~N~i~--~lp~~~~~l~~L~~L~L~~N~i~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~ 119 (222)
..++-+++.++ .+|..+. ++|+.|+|++|+|+.++. ..|..+++|+.|+|++|||.+.+...+
T Consensus 11 ~~v~Cs~~~L~~~~vP~~lp--~~l~~L~Ls~N~l~~l~~-~~f~~l~~L~~L~L~~NP~~CdC~l~~ 75 (130)
T 3rfe_A 11 TLVDCGRRGLTWASLPTAFP--VDTTELVLTGNNLTALPP-GLLDALPALRTAHLGANPWRCDCRLVP 75 (130)
T ss_dssp TEEECCSSCCCTTTSCSCCC--TTCSEEECTTSCCSSCCT-TTGGGCTTCCEEECCSSCCBCSGGGHH
T ss_pred CEEEeCCCCCccccCCCCCC--cCCCEEECCCCcCCccCh-hhhhhccccCEEEecCCCeeccCccHH
Confidence 36677777777 7775432 468899999999999887 778899999999999999999987655
No 152
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=98.55 E-value=2.3e-07 Score=77.71 Aligned_cols=104 Identities=15% Similarity=0.310 Sum_probs=53.9
Q ss_pred CccEEEeecCCCccchh-hhcCCCCCcEEEcccCCCc-----ccccc-ccCCccCCEEecccCcCCcCchh-hhCCCCCc
Q 027557 6 RDCPAVLSRNPIREIGD-SLLNMKAITKLSLSNCQVQ-----IIGSS-LKSCTELKELRLAHNDIKTLPAE-LAFNKKLQ 77 (222)
Q Consensus 6 ~~~~L~L~~n~l~~lp~-~~~~l~~L~~L~L~~n~i~-----~lp~~-~~~l~~L~~L~l~~N~i~~lp~~-~~~l~~L~ 77 (222)
.++.+.| .+.++.|+. .|.++++|+.+++.+|.+. .++.. |..+++|+.+.+. +.++.++.. |.++.+|+
T Consensus 249 ~L~~i~l-p~~i~~I~~~aF~~c~~L~~l~l~~~~~~~~~~~~I~~~aF~~c~~L~~l~l~-~~i~~I~~~aF~~c~~L~ 326 (401)
T 4fdw_A 249 GITTVKL-PNGVTNIASRAFYYCPELAEVTTYGSTFNDDPEAMIHPYCLEGCPKLARFEIP-ESIRILGQGLLGGNRKVT 326 (401)
T ss_dssp CCSEEEE-ETTCCEECTTTTTTCTTCCEEEEESSCCCCCTTCEECTTTTTTCTTCCEECCC-TTCCEECTTTTTTCCSCC
T ss_pred CccEEEe-CCCccEEChhHhhCCCCCCEEEeCCccccCCcccEECHHHhhCCccCCeEEeC-CceEEEhhhhhcCCCCcc
Confidence 3444555 334555532 5555566666666555544 34433 5555666666665 335555432 55556666
Q ss_pred eeeccCCccCCCcchHhhcCCCCCCEEEeeCCCCCCc
Q 027557 78 NLDLGKNLITRWSELKVLKSLVSLNNLNLQGNPVAEY 114 (222)
Q Consensus 78 ~L~L~~N~i~~~~~~~~~~~l~~L~~L~l~~N~l~~~ 114 (222)
.+.|..| +..++. ..|..+ +|+.+.+.+|.+..+
T Consensus 327 ~l~lp~~-l~~I~~-~aF~~~-~L~~l~l~~n~~~~l 360 (401)
T 4fdw_A 327 QLTIPAN-VTQINF-SAFNNT-GIKEVKVEGTTPPQV 360 (401)
T ss_dssp EEEECTT-CCEECT-TSSSSS-CCCEEEECCSSCCBC
T ss_pred EEEECcc-ccEEcH-HhCCCC-CCCEEEEcCCCCccc
Confidence 6666433 444443 455555 666666665544443
No 153
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=98.34 E-value=4.2e-07 Score=75.05 Aligned_cols=128 Identities=11% Similarity=0.050 Sum_probs=81.3
Q ss_pred CccEEEeecCCCccchhhhcCCCCCcEEEcccCCCcccc-ccc--cCCccCCEEeccc--Cc------CCcCchhh--hC
Q 027557 6 RDCPAVLSRNPIREIGDSLLNMKAITKLSLSNCQVQIIG-SSL--KSCTELKELRLAH--ND------IKTLPAEL--AF 72 (222)
Q Consensus 6 ~~~~L~L~~n~l~~lp~~~~~l~~L~~L~L~~n~i~~lp-~~~--~~l~~L~~L~l~~--N~------i~~lp~~~--~~ 72 (222)
.++.|.|++|.-..++. +. +++|+.|+|..|.+..-. ..+ ..+++|++|+|+. |. +..+...+ ..
T Consensus 173 ~L~~L~L~g~~~l~l~~-~~-~~~L~~L~L~~~~l~~~~l~~l~~~~lp~L~~L~L~~~~~~~~~~~~~~~l~~~l~~~~ 250 (362)
T 2ra8_A 173 LLNNLKIKGTNNLSIGK-KP-RPNLKSLEIISGGLPDSVVEDILGSDLPNLEKLVLYVGVEDYGFDGDMNVFRPLFSKDR 250 (362)
T ss_dssp TCCEEEEECCBTCBCCS-CB-CTTCSEEEEECSBCCHHHHHHHHHSBCTTCCEEEEECBCGGGTCCSCGGGTGGGSCTTT
T ss_pred CCcEEEEeCCCCceecc-cc-CCCCcEEEEecCCCChHHHHHHHHccCCCCcEEEEeccccccccchhHHHHHHHHhcCC
Confidence 57899999884224443 33 789999999999886521 123 3688999999853 21 22222222 35
Q ss_pred CCCCceeeccCCccCCCcc--hHhhcCCCCCCEEEeeCCCCCCchh-HHHHHHHhCCccccccCCC
Q 027557 73 NKKLQNLDLGKNLITRWSE--LKVLKSLVSLNNLNLQGNPVAEYDK-LAKKVKNLLPSLHIFNARP 135 (222)
Q Consensus 73 l~~L~~L~L~~N~i~~~~~--~~~~~~l~~L~~L~l~~N~l~~~~~-~~~~~~~~l~~L~~l~~~~ 135 (222)
+++|++|+|.+|.|..... +.....+++|++|+|+.|.+.+... .....+..+++|+.|+...
T Consensus 251 ~p~Lr~L~L~~~~i~~~~~~~la~a~~~~~L~~LdLs~n~L~d~G~~~L~~~L~~l~~L~~L~L~~ 316 (362)
T 2ra8_A 251 FPNLKWLGIVDAEEQNVVVEMFLESDILPQLETMDISAGVLTDEGARLLLDHVDKIKHLKFINMKY 316 (362)
T ss_dssp CTTCCEEEEESCTTHHHHHHHHHHCSSGGGCSEEECCSSCCBHHHHHHHHTTHHHHTTCSEEECCS
T ss_pred CCCcCEEeCCCCCCchHHHHHHHhCccCCCCCEEECCCCCCChHHHHHHHhhcccCCcceEEECCC
Confidence 7899999999998875221 1112357899999999998876421 1111123567888776643
No 154
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=98.23 E-value=1.9e-06 Score=63.71 Aligned_cols=98 Identities=17% Similarity=0.230 Sum_probs=70.5
Q ss_pred CCCccEEEeecCCCccch-hhhcCCCCCcEEEcccCC-Ccc--ccccccCC----ccCCEEecccCc-CCcCc-hhhhCC
Q 027557 4 GIRDCPAVLSRNPIREIG-DSLLNMKAITKLSLSNCQ-VQI--IGSSLKSC----TELKELRLAHND-IKTLP-AELAFN 73 (222)
Q Consensus 4 ~~~~~~L~L~~n~l~~lp-~~~~~l~~L~~L~L~~n~-i~~--lp~~~~~l----~~L~~L~l~~N~-i~~lp-~~~~~l 73 (222)
...++.|+|+++.|+... ..+..+++|+.|+|++|. |+. +. .+..+ ++|++|+|++|. |++-. ..+..+
T Consensus 60 ~~~L~~LDLs~~~Itd~GL~~L~~~~~L~~L~L~~C~~ItD~gL~-~L~~~~~~~~~L~~L~Ls~C~~ITD~Gl~~L~~~ 138 (176)
T 3e4g_A 60 KYKIQAIDATDSCIMSIGFDHMEGLQYVEKIRLCKCHYIEDGCLE-RLSQLENLQKSMLEMEIISCGNVTDKGIIALHHF 138 (176)
T ss_dssp CCCEEEEEEESCCCCGGGGGGGTTCSCCCEEEEESCTTCCHHHHH-HHHTCHHHHHHCCEEEEESCTTCCHHHHHHGGGC
T ss_pred CceEeEEeCcCCCccHHHHHHhcCCCCCCEEEeCCCCccCHHHHH-HHHhcccccCCCCEEEcCCCCcCCHHHHHHHhcC
Confidence 456789999999998643 467899999999999996 776 22 24443 479999999984 88421 357789
Q ss_pred CCCceeeccCCc-cCCCcc-h-HhhcCCCCCC
Q 027557 74 KKLQNLDLGKNL-ITRWSE-L-KVLKSLVSLN 102 (222)
Q Consensus 74 ~~L~~L~L~~N~-i~~~~~-~-~~~~~l~~L~ 102 (222)
++|++|+|+++. |++... . ..-..+|+++
T Consensus 139 ~~L~~L~L~~c~~Itd~gl~~~~L~~~lP~l~ 170 (176)
T 3e4g_A 139 RNLKYLFLSDLPGVKEKEKIVQAFKTSLPSLE 170 (176)
T ss_dssp TTCCEEEEESCTTCCCHHHHHHHHHHHCTTCE
T ss_pred CCCCEEECCCCCCCCchHHHHHHHHHHCCCcE
Confidence 999999999974 665321 0 1223466654
No 155
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=98.22 E-value=4.1e-06 Score=69.15 Aligned_cols=127 Identities=13% Similarity=0.106 Sum_probs=80.8
Q ss_pred CccEEEeecCCCc----------cchhhhcCCCCCcEEEcccCCCccccccccCCccCCEEecccCcCCcC-chhhh--C
Q 027557 6 RDCPAVLSRNPIR----------EIGDSLLNMKAITKLSLSNCQVQIIGSSLKSCTELKELRLAHNDIKTL-PAELA--F 72 (222)
Q Consensus 6 ~~~~L~L~~n~l~----------~lp~~~~~l~~L~~L~L~~n~i~~lp~~~~~l~~L~~L~l~~N~i~~l-p~~~~--~ 72 (222)
.++.|.+..+... .+...+..+++|+.|+|++|.-..++. + .+++|++|++..+.+..- ...+. .
T Consensus 140 ~L~~L~l~~~~~e~~~is~~~~~~L~~ll~~~P~L~~L~L~g~~~l~l~~-~-~~~~L~~L~L~~~~l~~~~l~~l~~~~ 217 (362)
T 2ra8_A 140 HFEGLFWGDIDFEEQEISWIEQVDLSPVLDAMPLLNNLKIKGTNNLSIGK-K-PRPNLKSLEIISGGLPDSVVEDILGSD 217 (362)
T ss_dssp TCSEEEECCCCTTTCCGGGCBCCBCHHHHHTCTTCCEEEEECCBTCBCCS-C-BCTTCSEEEEECSBCCHHHHHHHHHSB
T ss_pred hhhheeecCcchhhcccccccccCHHHHHhcCCCCcEEEEeCCCCceecc-c-cCCCCcEEEEecCCCChHHHHHHHHcc
Confidence 4677877665431 355566788999999998884223443 4 388999999998887621 12333 6
Q ss_pred CCCCceeeccC--Cc------cCCCcchHhhcCCCCCCEEEeeCCCCCCchhHHHHHH--HhCCccccccCCCC
Q 027557 73 NKKLQNLDLGK--NL------ITRWSELKVLKSLVSLNNLNLQGNPVAEYDKLAKKVK--NLLPSLHIFNARPI 136 (222)
Q Consensus 73 l~~L~~L~L~~--N~------i~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~--~~l~~L~~l~~~~~ 136 (222)
+++|++|+|+. |. +..+..+-....+++|++|++.+|.+..... ..+. ..+|+|+.|+....
T Consensus 218 lp~L~~L~L~~~~~~~~~~~~~~~l~~~l~~~~~p~Lr~L~L~~~~i~~~~~--~~la~a~~~~~L~~LdLs~n 289 (362)
T 2ra8_A 218 LPNLEKLVLYVGVEDYGFDGDMNVFRPLFSKDRFPNLKWLGIVDAEEQNVVV--EMFLESDILPQLETMDISAG 289 (362)
T ss_dssp CTTCCEEEEECBCGGGTCCSCGGGTGGGSCTTTCTTCCEEEEESCTTHHHHH--HHHHHCSSGGGCSEEECCSS
T ss_pred CCCCcEEEEeccccccccchhHHHHHHHHhcCCCCCcCEEeCCCCCCchHHH--HHHHhCccCCCCCEEECCCC
Confidence 89999999853 22 2222221111358999999999998875321 1122 14678888877543
No 156
>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1
Probab=98.18 E-value=4.2e-06 Score=62.96 Aligned_cols=115 Identities=11% Similarity=0.046 Sum_probs=80.8
Q ss_pred hhcCCCCCcEEEcccC-CCcc-----ccccccCCccCCEEecccCcCCc-----CchhhhCCCCCceeeccCCccCCCcc
Q 027557 23 SLLNMKAITKLSLSNC-QVQI-----IGSSLKSCTELKELRLAHNDIKT-----LPAELAFNKKLQNLDLGKNLITRWSE 91 (222)
Q Consensus 23 ~~~~l~~L~~L~L~~n-~i~~-----lp~~~~~l~~L~~L~l~~N~i~~-----lp~~~~~l~~L~~L~L~~N~i~~~~~ 91 (222)
.+.+-+.|+.|+|++| .|.. +...+..-+.|+.|+|++|+|.. +-..+..-..|++|+|++|.|..-..
T Consensus 36 ll~~n~~L~~L~L~~nn~igd~ga~~la~aL~~N~~L~~L~L~~n~igd~ga~alA~aL~~N~tL~~L~L~~N~Ig~~Ga 115 (197)
T 1pgv_A 36 LREDDTDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLTPELL 115 (197)
T ss_dssp HHTTCSSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCCHHHH
T ss_pred HHhcCCCccEEECCCCCCCCHHHHHHHHHHHhhCCCcCEEEccCCCCChHHHHHHHHHHhcCCccCeEecCCCcCCHHHH
Confidence 3456788999999985 8765 44457778889999999999973 22345566889999999999987432
Q ss_pred h---HhhcCCCCCCEEEeeCCC---CCCch-hHHHHHHHhCCccccccCCCCC
Q 027557 92 L---KVLKSLVSLNNLNLQGNP---VAEYD-KLAKKVKNLLPSLHIFNARPIN 137 (222)
Q Consensus 92 ~---~~~~~l~~L~~L~l~~N~---l~~~~-~~~~~~~~~l~~L~~l~~~~~~ 137 (222)
. ..+..-+.|+.|+|++|. +.... .....++..-+.|..|+.....
T Consensus 116 ~ala~aL~~N~tL~~L~L~n~~~~~ig~~g~~~ia~aL~~N~tL~~L~l~~~~ 168 (197)
T 1pgv_A 116 ARLLRSTLVTQSIVEFKADNQRQSVLGNQVEMDMMMAIEENESLLRVGISFAS 168 (197)
T ss_dssp HHHHHHTTTTCCCSEEECCCCSSCCCCHHHHHHHHHHHHHCSSCCEEECCCCC
T ss_pred HHHHHHHhhCCceeEEECCCCcCcCcCHHHHHHHHHHHHhCCCcCeEeccCCC
Confidence 1 345666789999998653 33221 2344466677888888776444
No 157
>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1
Probab=98.03 E-value=5.1e-05 Score=56.98 Aligned_cols=106 Identities=11% Similarity=0.114 Sum_probs=76.3
Q ss_pred CCccEEEeecC-CCcc-----chhhhcCCCCCcEEEcccCCCcc-----ccccccCCccCCEEecccCcCCcC-----ch
Q 027557 5 IRDCPAVLSRN-PIRE-----IGDSLLNMKAITKLSLSNCQVQI-----IGSSLKSCTELKELRLAHNDIKTL-----PA 68 (222)
Q Consensus 5 ~~~~~L~L~~n-~l~~-----lp~~~~~l~~L~~L~L~~n~i~~-----lp~~~~~l~~L~~L~l~~N~i~~l-----p~ 68 (222)
-++++|+|++| .|.. |-+.+..-..|+.|+|++|.|.. |...+..-+.|++|+|++|.|+.- -.
T Consensus 41 ~~L~~L~L~~nn~igd~ga~~la~aL~~N~~L~~L~L~~n~igd~ga~alA~aL~~N~tL~~L~L~~N~Ig~~Ga~ala~ 120 (197)
T 1pgv_A 41 TDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLTPELLARLLR 120 (197)
T ss_dssp SSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCCHHHHHHHHH
T ss_pred CCccEEECCCCCCCCHHHHHHHHHHHhhCCCcCEEEccCCCCChHHHHHHHHHHhcCCccCeEecCCCcCCHHHHHHHHH
Confidence 45788999985 7763 45677778899999999999986 444466678899999999999842 22
Q ss_pred hhhCCCCCceeeccCCc---cCCCc--ch-HhhcCCCCCCEEEeeCCC
Q 027557 69 ELAFNKKLQNLDLGKNL---ITRWS--EL-KVLKSLVSLNNLNLQGNP 110 (222)
Q Consensus 69 ~~~~l~~L~~L~L~~N~---i~~~~--~~-~~~~~l~~L~~L~l~~N~ 110 (222)
.+..-..|+.|+|++|. |..-. .+ ..+..-+.|..|+++.|.
T Consensus 121 aL~~N~tL~~L~L~n~~~~~ig~~g~~~ia~aL~~N~tL~~L~l~~~~ 168 (197)
T 1pgv_A 121 STLVTQSIVEFKADNQRQSVLGNQVEMDMMMAIEENESLLRVGISFAS 168 (197)
T ss_dssp HTTTTCCCSEEECCCCSSCCCCHHHHHHHHHHHHHCSSCCEEECCCCC
T ss_pred HHhhCCceeEEECCCCcCcCcCHHHHHHHHHHHHhCCCcCeEeccCCC
Confidence 45556779999998653 33211 01 356677889999987664
No 158
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*
Probab=97.99 E-value=7.8e-06 Score=57.42 Aligned_cols=54 Identities=20% Similarity=0.261 Sum_probs=29.7
Q ss_pred EEEcccCCCc--cccccccCCccCCEEecccCcCCcCchh-hhCCCCCceeeccCCccC
Q 027557 32 KLSLSNCQVQ--IIGSSLKSCTELKELRLAHNDIKTLPAE-LAFNKKLQNLDLGKNLIT 87 (222)
Q Consensus 32 ~L~L~~n~i~--~lp~~~~~l~~L~~L~l~~N~i~~lp~~-~~~l~~L~~L~L~~N~i~ 87 (222)
.++.+++.++ .+|..+ -++|++|+|++|+|+.+|.. |..+++|+.|+|++|.+.
T Consensus 12 ~v~Cs~~~L~~~~vP~~l--p~~l~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~NP~~ 68 (130)
T 3rfe_A 12 LVDCGRRGLTWASLPTAF--PVDTTELVLTGNNLTALPPGLLDALPALRTAHLGANPWR 68 (130)
T ss_dssp EEECCSSCCCTTTSCSCC--CTTCSEEECTTSCCSSCCTTTGGGCTTCCEEECCSSCCB
T ss_pred EEEeCCCCCccccCCCCC--CcCCCEEECCCCcCCccChhhhhhccccCEEEecCCCee
Confidence 4555555555 555332 12456666666666665443 555666666666666553
No 159
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=97.74 E-value=0.00015 Score=60.24 Aligned_cols=80 Identities=16% Similarity=0.367 Sum_probs=35.9
Q ss_pred hhcCCCCCcEEEcccCCCcccccc-ccCCccCCEEecccCcCCcCchh-hhCCCCCceeeccCCccCCCcchHhhcCCCC
Q 027557 23 SLLNMKAITKLSLSNCQVQIIGSS-LKSCTELKELRLAHNDIKTLPAE-LAFNKKLQNLDLGKNLITRWSELKVLKSLVS 100 (222)
Q Consensus 23 ~~~~l~~L~~L~L~~n~i~~lp~~-~~~l~~L~~L~l~~N~i~~lp~~-~~~l~~L~~L~L~~N~i~~~~~~~~~~~l~~ 100 (222)
.|..+..|+.+.+..+. ..+... |..+..|+.+.+. +.++.++.. |..+.+|+.+.+..+ ++.+.. ..|.+|.+
T Consensus 260 aF~~c~~L~~i~lp~~~-~~I~~~aF~~c~~L~~i~l~-~~i~~I~~~aF~~c~~L~~i~lp~~-v~~I~~-~aF~~C~~ 335 (394)
T 4gt6_A 260 AFDSCAYLASVKMPDSV-VSIGTGAFMNCPALQDIEFS-SRITELPESVFAGCISLKSIDIPEG-ITQILD-DAFAGCEQ 335 (394)
T ss_dssp TTTTCSSCCEEECCTTC-CEECTTTTTTCTTCCEEECC-TTCCEECTTTTTTCTTCCEEECCTT-CCEECT-TTTTTCTT
T ss_pred eeeecccccEEeccccc-ceecCcccccccccccccCC-CcccccCceeecCCCCcCEEEeCCc-ccEehH-hHhhCCCC
Confidence 44455555555554332 223322 4445555555543 234444332 444455555555432 333333 34555555
Q ss_pred CCEEEe
Q 027557 101 LNNLNL 106 (222)
Q Consensus 101 L~~L~l 106 (222)
|+.+.+
T Consensus 336 L~~i~i 341 (394)
T 4gt6_A 336 LERIAI 341 (394)
T ss_dssp CCEEEE
T ss_pred CCEEEE
Confidence 555555
No 160
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=97.69 E-value=7.6e-05 Score=61.50 Aligned_cols=118 Identities=21% Similarity=0.325 Sum_probs=76.1
Q ss_pred cEEEeecCCCccchh-hhcCCCCCcEEEcccCCCcccccc-ccCCccCCEEecccCcCCcCchh-hhCCCCCceeeccCC
Q 027557 8 CPAVLSRNPIREIGD-SLLNMKAITKLSLSNCQVQIIGSS-LKSCTELKELRLAHNDIKTLPAE-LAFNKKLQNLDLGKN 84 (222)
Q Consensus 8 ~~L~L~~n~l~~lp~-~~~~l~~L~~L~L~~n~i~~lp~~-~~~l~~L~~L~l~~N~i~~lp~~-~~~l~~L~~L~L~~N 84 (222)
..+.+.. .+..++. .+..+..|+.+.+..+ ++.+... +..+..|+.+.+..+ ++.++.. |..+.+|+.+.+.++
T Consensus 220 ~~i~~~~-~~~~i~~~~f~~~~~L~~i~lp~~-v~~I~~~aF~~~~~l~~i~l~~~-i~~i~~~aF~~c~~L~~i~l~~~ 296 (379)
T 4h09_A 220 KKITITS-GVTTLGDGAFYGMKALDEIAIPKN-VTSIGSFLLQNCTALKTLNFYAK-VKTVPYLLCSGCSNLTKVVMDNS 296 (379)
T ss_dssp SEEECCT-TCCEECTTTTTTCSSCCEEEECTT-CCEECTTTTTTCTTCCEEEECCC-CSEECTTTTTTCTTCCEEEECCT
T ss_pred ceeeecc-ceeEEccccccCCccceEEEcCCC-ccEeCccccceeehhcccccccc-ceecccccccccccccccccccc
Confidence 4444433 3555543 5667778888887665 6666654 677777888777544 5655443 777778888888777
Q ss_pred ccCCCcchHhhcCCCCCCEEEeeCCCCCCchhHHHHHHHhCCccccccC
Q 027557 85 LITRWSELKVLKSLVSLNNLNLQGNPVAEYDKLAKKVKNLLPSLHIFNA 133 (222)
Q Consensus 85 ~i~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~l~~ 133 (222)
.+..++. ..|.++.+|+.+.+..+ +..+..+ ....+.+|+.+..
T Consensus 297 ~i~~I~~-~aF~~c~~L~~i~lp~~-l~~I~~~---aF~~C~~L~~i~i 340 (379)
T 4h09_A 297 AIETLEP-RVFMDCVKLSSVTLPTA-LKTIQVY---AFKNCKALSTISY 340 (379)
T ss_dssp TCCEECT-TTTTTCTTCCEEECCTT-CCEECTT---TTTTCTTCCCCCC
T ss_pred ccceehh-hhhcCCCCCCEEEcCcc-ccEEHHH---HhhCCCCCCEEEE
Confidence 7777765 67778888888887543 5555443 3345666665544
No 161
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=97.48 E-value=0.00032 Score=57.71 Aligned_cols=96 Identities=19% Similarity=0.286 Sum_probs=44.1
Q ss_pred cEEEeecCCCccchh-hhcCCCCCcEEEcccCCCcccccc-ccCCccCCEEecccCcCCcCchh-hhCCCCCceeeccCC
Q 027557 8 CPAVLSRNPIREIGD-SLLNMKAITKLSLSNCQVQIIGSS-LKSCTELKELRLAHNDIKTLPAE-LAFNKKLQNLDLGKN 84 (222)
Q Consensus 8 ~~L~L~~n~l~~lp~-~~~~l~~L~~L~L~~n~i~~lp~~-~~~l~~L~~L~l~~N~i~~lp~~-~~~l~~L~~L~L~~N 84 (222)
+.+.+..+ ++.|+. .|.++..|+.+.+..+ ++.++.. |..+.+|+.+.+.++.++.++.. |.++.+|+.+.|..+
T Consensus 243 ~~i~lp~~-v~~I~~~aF~~~~~l~~i~l~~~-i~~i~~~aF~~c~~L~~i~l~~~~i~~I~~~aF~~c~~L~~i~lp~~ 320 (379)
T 4h09_A 243 DEIAIPKN-VTSIGSFLLQNCTALKTLNFYAK-VKTVPYLLCSGCSNLTKVVMDNSAIETLEPRVFMDCVKLSSVTLPTA 320 (379)
T ss_dssp CEEEECTT-CCEECTTTTTTCTTCCEEEECCC-CSEECTTTTTTCTTCCEEEECCTTCCEECTTTTTTCTTCCEEECCTT
T ss_pred eEEEcCCC-ccEeCccccceeehhcccccccc-ceeccccccccccccccccccccccceehhhhhcCCCCCCEEEcCcc
Confidence 33444332 444432 3444555555555332 4444433 44555555555555555544332 445555555555432
Q ss_pred ccCCCcchHhhcCCCCCCEEEee
Q 027557 85 LITRWSELKVLKSLVSLNNLNLQ 107 (222)
Q Consensus 85 ~i~~~~~~~~~~~l~~L~~L~l~ 107 (222)
+..+.. ..|.+|.+|+.+.+.
T Consensus 321 -l~~I~~-~aF~~C~~L~~i~ip 341 (379)
T 4h09_A 321 -LKTIQV-YAFKNCKALSTISYP 341 (379)
T ss_dssp -CCEECT-TTTTTCTTCCCCCCC
T ss_pred -ccEEHH-HHhhCCCCCCEEEEC
Confidence 333333 345555555555443
No 162
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=97.43 E-value=0.00018 Score=59.70 Aligned_cols=83 Identities=17% Similarity=0.370 Sum_probs=69.8
Q ss_pred hhcCCCCCcEEEcccCCCcccccc-ccCCccCCEEecccCcCCcCch-hhhCCCCCceeeccCCccCCCcchHhhcCCCC
Q 027557 23 SLLNMKAITKLSLSNCQVQIIGSS-LKSCTELKELRLAHNDIKTLPA-ELAFNKKLQNLDLGKNLITRWSELKVLKSLVS 100 (222)
Q Consensus 23 ~~~~l~~L~~L~L~~n~i~~lp~~-~~~l~~L~~L~l~~N~i~~lp~-~~~~l~~L~~L~L~~N~i~~~~~~~~~~~l~~ 100 (222)
.|..+.+|+.+.+..+ ++.++.. |..+.+|+.+++..+ ++.++. .|.++.+|+.+.+..| +..+.. ..|.+|.+
T Consensus 292 ~F~~~~~L~~i~l~~~-i~~I~~~aF~~c~~L~~i~lp~~-v~~I~~~aF~~c~~L~~i~lp~~-l~~I~~-~aF~~C~~ 367 (394)
T 4fs7_A 292 TFYGCSSLTEVKLLDS-VKFIGEEAFESCTSLVSIDLPYL-VEEIGKRSFRGCTSLSNINFPLS-LRKIGA-NAFQGCIN 367 (394)
T ss_dssp TTTTCTTCCEEEECTT-CCEECTTTTTTCTTCCEECCCTT-CCEECTTTTTTCTTCCEECCCTT-CCEECT-TTBTTCTT
T ss_pred cccccccccccccccc-cceechhhhcCCCCCCEEEeCCc-ccEEhHHhccCCCCCCEEEECcc-ccEehH-HHhhCCCC
Confidence 6778999999999765 7888766 889999999999755 888855 4889999999999877 777766 78999999
Q ss_pred CCEEEeeCC
Q 027557 101 LNNLNLQGN 109 (222)
Q Consensus 101 L~~L~l~~N 109 (222)
|+.+.+..+
T Consensus 368 L~~i~lp~~ 376 (394)
T 4fs7_A 368 LKKVELPKR 376 (394)
T ss_dssp CCEEEEEGG
T ss_pred CCEEEECCC
Confidence 999999765
No 163
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=97.38 E-value=0.00036 Score=57.82 Aligned_cols=116 Identities=16% Similarity=0.239 Sum_probs=87.1
Q ss_pred ccEEEeecCCCccch-hhhcCCCCCcEEEcccCCCcccccc-ccCCccCCEEecccCcCCcCchh-hhCCCCCceeeccC
Q 027557 7 DCPAVLSRNPIREIG-DSLLNMKAITKLSLSNCQVQIIGSS-LKSCTELKELRLAHNDIKTLPAE-LAFNKKLQNLDLGK 83 (222)
Q Consensus 7 ~~~L~L~~n~l~~lp-~~~~~l~~L~~L~L~~n~i~~lp~~-~~~l~~L~~L~l~~N~i~~lp~~-~~~l~~L~~L~L~~ 83 (222)
++.+.+..+.. .++ ..|..+..++.+.+..+. ++.. +..+.+|+.+.+..+ ++.++.. |..+.+|+.+++..
T Consensus 255 l~~~~~~~~~~-~i~~~~F~~~~~l~~~~~~~~~---i~~~~F~~~~~L~~i~l~~~-i~~I~~~aF~~c~~L~~i~lp~ 329 (394)
T 4fs7_A 255 LESISIQNNKL-RIGGSLFYNCSGLKKVIYGSVI---VPEKTFYGCSSLTEVKLLDS-VKFIGEEAFESCTSLVSIDLPY 329 (394)
T ss_dssp CCEEEECCTTC-EECSCTTTTCTTCCEEEECSSE---ECTTTTTTCTTCCEEEECTT-CCEECTTTTTTCTTCCEECCCT
T ss_pred ceeEEcCCCcc-eeeccccccccccceeccCcee---eccccccccccccccccccc-cceechhhhcCCCCCCEEEeCC
Confidence 45666766543 443 477889999999887764 3433 788999999999766 7777554 88899999999975
Q ss_pred CccCCCcchHhhcCCCCCCEEEeeCCCCCCchhHHHHHHHhCCccccccC
Q 027557 84 NLITRWSELKVLKSLVSLNNLNLQGNPVAEYDKLAKKVKNLLPSLHIFNA 133 (222)
Q Consensus 84 N~i~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~l~~ 133 (222)
+ +..++. ..|.+|.+|+.+.+..| +..+... ....+++|+.+..
T Consensus 330 ~-v~~I~~-~aF~~c~~L~~i~lp~~-l~~I~~~---aF~~C~~L~~i~l 373 (394)
T 4fs7_A 330 L-VEEIGK-RSFRGCTSLSNINFPLS-LRKIGAN---AFQGCINLKKVEL 373 (394)
T ss_dssp T-CCEECT-TTTTTCTTCCEECCCTT-CCEECTT---TBTTCTTCCEEEE
T ss_pred c-ccEEhH-HhccCCCCCCEEEECcc-ccEehHH---HhhCCCCCCEEEE
Confidence 4 777766 68999999999999876 6666543 3457888887755
No 164
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=97.31 E-value=0.00049 Score=57.06 Aligned_cols=98 Identities=18% Similarity=0.407 Sum_probs=77.4
Q ss_pred cEEEeecCCCccch-hhhcCCCCCcEEEcccCCCcccccc-ccCCccCCEEecccCcCCcCch-hhhCCCCCceeeccCC
Q 027557 8 CPAVLSRNPIREIG-DSLLNMKAITKLSLSNCQVQIIGSS-LKSCTELKELRLAHNDIKTLPA-ELAFNKKLQNLDLGKN 84 (222)
Q Consensus 8 ~~L~L~~n~l~~lp-~~~~~l~~L~~L~L~~n~i~~lp~~-~~~l~~L~~L~l~~N~i~~lp~-~~~~l~~L~~L~L~~N 84 (222)
+.+.+..+ +..|+ ..|.++..|+.+.+. +.++.++.. |..+.+|+.+.+..+ ++.++. .|.++.+|+.+.+..+
T Consensus 268 ~~i~lp~~-~~~I~~~aF~~c~~L~~i~l~-~~i~~I~~~aF~~c~~L~~i~lp~~-v~~I~~~aF~~C~~L~~i~ip~s 344 (394)
T 4gt6_A 268 ASVKMPDS-VVSIGTGAFMNCPALQDIEFS-SRITELPESVFAGCISLKSIDIPEG-ITQILDDAFAGCEQLERIAIPSS 344 (394)
T ss_dssp CEEECCTT-CCEECTTTTTTCTTCCEEECC-TTCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCEEEECTT
T ss_pred cEEecccc-cceecCcccccccccccccCC-CcccccCceeecCCCCcCEEEeCCc-ccEehHhHhhCCCCCCEEEECcc
Confidence 45555433 33454 367889999999996 568888876 889999999999865 777755 4889999999999755
Q ss_pred ccCCCcchHhhcCCCCCCEEEeeCCC
Q 027557 85 LITRWSELKVLKSLVSLNNLNLQGNP 110 (222)
Q Consensus 85 ~i~~~~~~~~~~~l~~L~~L~l~~N~ 110 (222)
+..+.. ..|.+|.+|+.+.+.++.
T Consensus 345 -v~~I~~-~aF~~C~~L~~i~~~~~~ 368 (394)
T 4gt6_A 345 -VTKIPE-SAFSNCTALNNIEYSGSR 368 (394)
T ss_dssp -CCBCCG-GGGTTCTTCCEEEESSCH
T ss_pred -cCEEhH-hHhhCCCCCCEEEECCce
Confidence 777776 789999999999998874
No 165
>2lz0_A Uncharacterized protein; hypothetical leucine rich repeat protein, structural genomic unknown function; NMR {Bacteroides capillosus}
Probab=69.99 E-value=5.1 Score=25.96 Aligned_cols=43 Identities=16% Similarity=0.392 Sum_probs=19.3
Q ss_pred CCccchh-hhcCCCCCcEEEcccCCCcccccc-ccCCccCCEEecc
Q 027557 16 PIREIGD-SLLNMKAITKLSLSNCQVQIIGSS-LKSCTELKELRLA 59 (222)
Q Consensus 16 ~l~~lp~-~~~~l~~L~~L~L~~n~i~~lp~~-~~~l~~L~~L~l~ 59 (222)
.++.|.. .|.++..|+.+.|-.+ ++.|... |..+.+|+.+.+.
T Consensus 7 ~vt~I~~~aF~~c~~L~~i~iP~~-v~~Ig~~aF~~C~~L~~i~~~ 51 (100)
T 2lz0_A 7 PVVGMDKSLFAGNTVIREITVQPN-IGLLYDGMFSGCTALEKLILT 51 (100)
T ss_dssp CCCSSCSCTTTTCTTCCCEEECTT-SSCCCTTSSTTCTTCCCEEEC
T ss_pred ccCEecHHHhcCCCCCcEEEcCCc-hheEcHHHHhccCCccEEEEc
Confidence 3444432 4445555555555432 3333332 4444444444443
No 166
>2lz0_A Uncharacterized protein; hypothetical leucine rich repeat protein, structural genomic unknown function; NMR {Bacteroides capillosus}
Probab=65.07 E-value=8.1 Score=24.99 Aligned_cols=44 Identities=18% Similarity=0.255 Sum_probs=25.6
Q ss_pred CCcCch-hhhCCCCCceeeccCCccCCCcchHhhcCCCCCCEEEeeC
Q 027557 63 IKTLPA-ELAFNKKLQNLDLGKNLITRWSELKVLKSLVSLNNLNLQG 108 (222)
Q Consensus 63 i~~lp~-~~~~l~~L~~L~L~~N~i~~~~~~~~~~~l~~L~~L~l~~ 108 (222)
++.|.. .|.++.+|+.+.+..+ ++.+.. ..|..|.+|+.+.+.+
T Consensus 8 vt~I~~~aF~~c~~L~~i~iP~~-v~~Ig~-~aF~~C~~L~~i~~~~ 52 (100)
T 2lz0_A 8 VVGMDKSLFAGNTVIREITVQPN-IGLLYD-GMFSGCTALEKLILTG 52 (100)
T ss_dssp CCSSCSCTTTTCTTCCCEEECTT-SSCCCT-TSSTTCTTCCCEEECC
T ss_pred cCEecHHHhcCCCCCcEEEcCCc-hheEcH-HHHhccCCccEEEEcC
Confidence 444433 2666666666666543 444443 4677777777777754
Done!