Query 027558
Match_columns 222
No_of_seqs 119 out of 529
Neff 6.3
Searched_HMMs 46136
Date Fri Mar 29 11:43:28 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/027558.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/027558hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG5040 BMH1 14-3-3 family pro 100.0 2.1E-82 4.5E-87 529.9 11.6 208 8-218 1-208 (268)
2 smart00101 14_3_3 14-3-3 homol 100.0 7.3E-80 1.6E-84 536.5 20.6 205 12-218 1-206 (244)
3 PF00244 14-3-3: 14-3-3 protei 100.0 4.7E-76 1E-80 511.2 18.5 204 12-218 1-204 (236)
4 KOG0841 Multifunctional chaper 100.0 1.9E-71 4.1E-76 475.3 15.5 205 11-218 1-206 (247)
5 PF13424 TPR_12: Tetratricopep 96.3 0.0055 1.2E-07 43.0 4.0 54 156-211 21-74 (78)
6 KOG1840 Kinesin light chain [C 95.4 1.1 2.3E-05 43.6 16.4 186 13-213 200-397 (508)
7 TIGR00990 3a0801s09 mitochondr 92.1 3.6 7.8E-05 40.1 13.4 54 156-211 483-536 (615)
8 PF12862 Apc5: Anaphase-promot 89.2 1.2 2.7E-05 32.8 5.6 68 140-213 3-71 (94)
9 PF13414 TPR_11: TPR repeat; P 82.8 4.8 0.0001 26.9 5.6 47 156-211 19-66 (69)
10 PF07719 TPR_2: Tetratricopept 82.0 3.6 7.8E-05 23.6 4.1 28 15-42 4-31 (34)
11 PF04781 DUF627: Protein of un 80.7 4.5 9.8E-05 31.6 5.3 58 112-170 16-74 (111)
12 PF13374 TPR_10: Tetratricopep 79.9 1.9 4E-05 25.8 2.4 24 156-179 18-41 (42)
13 PF13174 TPR_6: Tetratricopept 79.7 4.2 9.1E-05 23.0 3.8 28 15-42 3-30 (33)
14 PF13181 TPR_8: Tetratricopept 77.8 5.3 0.00012 23.0 3.9 29 14-42 3-31 (34)
15 TIGR02917 PEP_TPR_lipo putativ 74.8 85 0.0018 30.4 16.0 28 15-42 706-733 (899)
16 PF13428 TPR_14: Tetratricopep 73.2 9 0.00019 23.9 4.3 29 14-42 3-31 (44)
17 PF00515 TPR_1: Tetratricopept 72.8 9.4 0.0002 22.0 4.1 28 15-42 4-31 (34)
18 KOG1840 Kinesin light chain [C 72.1 1E+02 0.0022 30.1 17.0 178 13-210 284-477 (508)
19 PF13431 TPR_17: Tetratricopep 69.4 4.7 0.0001 24.2 2.2 34 162-204 1-34 (34)
20 PF13424 TPR_12: Tetratricopep 64.7 7.4 0.00016 26.7 2.8 38 178-217 1-38 (78)
21 PF13176 TPR_7: Tetratricopept 64.0 14 0.00031 22.0 3.7 27 15-41 2-28 (36)
22 PRK14720 transcript cleavage f 63.4 1.1E+02 0.0025 32.0 12.0 72 127-211 100-177 (906)
23 TIGR00990 3a0801s09 mitochondr 61.7 1.6E+02 0.0035 28.6 15.7 47 157-212 450-496 (615)
24 TIGR02917 PEP_TPR_lipo putativ 60.9 1.6E+02 0.0036 28.4 16.2 61 13-78 23-83 (899)
25 PF13432 TPR_16: Tetratricopep 60.5 22 0.00048 23.3 4.5 41 17-61 2-42 (65)
26 KOG4162 Predicted calmodulin-b 59.2 79 0.0017 32.5 9.7 97 101-212 410-507 (799)
27 PRK10049 pgaA outer membrane p 58.4 2.1E+02 0.0046 28.9 14.4 28 15-42 119-146 (765)
28 KOG4759 Ribosome recycling fac 57.9 41 0.0009 30.1 6.8 72 45-119 182-253 (263)
29 PF14559 TPR_19: Tetratricopep 57.9 35 0.00075 22.4 5.2 47 157-212 8-54 (68)
30 TIGR02521 type_IV_pilW type IV 57.9 90 0.0019 24.4 16.6 57 13-74 32-88 (234)
31 smart00028 TPR Tetratricopepti 56.1 27 0.00058 17.8 3.8 28 15-42 4-31 (34)
32 PF01765 RRF: Ribosome recycli 55.9 45 0.00098 27.3 6.4 73 46-119 85-157 (165)
33 PF05010 TACC: Transforming ac 54.8 1.3E+02 0.0028 26.0 9.2 84 17-116 123-206 (207)
34 PRK11447 cellulose synthase su 52.1 3.2E+02 0.0069 29.1 13.5 60 14-78 605-664 (1157)
35 PF13432 TPR_16: Tetratricopep 51.9 31 0.00068 22.6 4.1 32 11-42 30-61 (65)
36 PF13371 TPR_9: Tetratricopept 51.0 32 0.00069 23.0 4.1 46 157-211 12-57 (73)
37 PRK09782 bacteriophage N4 rece 50.5 3.4E+02 0.0073 28.8 14.2 26 15-40 512-537 (987)
38 COG0233 Frr Ribosome recycling 50.4 61 0.0013 27.6 6.4 73 46-119 105-177 (187)
39 CHL00033 ycf3 photosystem I as 48.7 56 0.0012 25.9 5.9 69 127-211 32-100 (168)
40 PF13414 TPR_11: TPR repeat; P 48.1 77 0.0017 20.8 7.1 46 13-62 4-49 (69)
41 cd00520 RRF Ribosome recycling 45.9 61 0.0013 27.0 5.7 73 46-119 99-171 (179)
42 PF10083 DUF2321: Uncharacteri 45.6 1.4E+02 0.0031 24.7 7.6 33 30-65 83-115 (158)
43 TIGR00496 frr ribosome recycli 44.9 72 0.0016 26.6 6.0 73 46-119 94-166 (176)
44 PRK11447 cellulose synthase su 44.8 4.1E+02 0.009 28.3 16.3 29 14-42 114-142 (1157)
45 PF12895 Apc3: Anaphase-promot 43.7 34 0.00074 23.8 3.4 44 163-209 41-84 (84)
46 PRK00083 frr ribosome recyclin 43.7 77 0.0017 26.7 6.1 73 46-119 103-175 (185)
47 PRK02603 photosystem I assembl 40.2 91 0.002 24.9 5.9 50 157-212 52-101 (172)
48 PF14559 TPR_19: Tetratricopep 40.0 54 0.0012 21.4 3.8 53 24-81 3-55 (68)
49 PF12569 NARP1: NMDA receptor- 38.1 3.9E+02 0.0085 26.1 17.8 63 150-213 156-224 (517)
50 PRK10747 putative protoheme IX 37.5 3.3E+02 0.0072 25.0 12.9 54 156-219 344-397 (398)
51 PF13371 TPR_9: Tetratricopept 36.1 68 0.0015 21.3 3.9 30 13-42 30-59 (73)
52 PRK11788 tetratricopeptide rep 33.9 3.3E+02 0.0073 24.0 15.8 26 16-41 111-136 (389)
53 cd02656 MIT MIT: domain contai 33.4 1.6E+02 0.0036 20.3 6.2 28 14-41 8-35 (75)
54 PF08899 DUF1844: Domain of un 33.3 1.7E+02 0.0036 21.2 5.6 37 14-61 32-68 (74)
55 TIGR02795 tol_pal_ybgF tol-pal 33.2 1.8E+02 0.0038 20.6 7.6 26 16-41 6-31 (119)
56 TIGR02795 tol_pal_ybgF tol-pal 32.5 1.8E+02 0.0039 20.5 6.2 48 13-61 40-87 (119)
57 PF12895 Apc3: Anaphase-promot 31.8 86 0.0019 21.7 4.0 22 16-37 62-83 (84)
58 TIGR03504 FimV_Cterm FimV C-te 30.7 96 0.0021 19.9 3.6 40 16-57 3-42 (44)
59 PF03755 YicC_N: YicC-like fam 30.4 45 0.00097 27.1 2.5 60 158-217 82-145 (159)
60 KOG1126 DNA-binding cell divis 30.3 63 0.0014 32.4 3.9 68 135-211 484-551 (638)
61 PLN03088 SGT1, suppressor of 29.3 1.3E+02 0.0029 27.4 5.7 46 157-211 19-64 (356)
62 COG3063 PilF Tfp pilus assembl 29.2 89 0.0019 27.8 4.2 48 156-212 85-132 (250)
63 KOG1679 Enoyl-CoA hydratase [L 28.6 64 0.0014 28.5 3.2 20 160-180 217-236 (291)
64 cd05804 StaR_like StaR_like; a 28.4 4E+02 0.0087 23.2 12.3 33 10-42 41-73 (355)
65 cd02682 MIT_AAA_Arch MIT: doma 27.6 1.1E+02 0.0025 22.0 3.9 27 14-40 8-34 (75)
66 PF12603 DUF3770: Protein of u 27.5 2E+02 0.0043 25.6 6.2 94 11-124 4-107 (250)
67 KOG4234 TPR repeat-containing 27.4 2.6E+02 0.0055 24.8 6.7 29 14-42 170-198 (271)
68 PF05008 V-SNARE: Vesicle tran 26.2 2.3E+02 0.005 19.7 6.1 43 30-75 3-45 (79)
69 PF08424 NRDE-2: NRDE-2, neces 25.8 1.5E+02 0.0034 26.6 5.4 55 156-211 118-182 (321)
70 cd05804 StaR_like StaR_like; a 25.6 4.5E+02 0.0098 22.9 15.5 60 14-75 8-67 (355)
71 PF14689 SPOB_a: Sensor_kinase 24.9 1.5E+02 0.0033 20.1 4.1 26 16-41 27-52 (62)
72 TIGR03302 OM_YfiO outer membra 24.8 3.9E+02 0.0085 21.9 18.5 63 13-79 34-98 (235)
73 KOG0687 26S proteasome regulat 24.8 1.9E+02 0.0042 27.1 5.7 77 137-216 54-137 (393)
74 PRK11189 lipoprotein NlpI; Pro 24.7 1.5E+02 0.0033 26.0 5.1 29 14-42 238-266 (296)
75 PF09986 DUF2225: Uncharacteri 24.2 3.7E+02 0.0081 22.9 7.2 70 137-212 125-194 (214)
76 cd02678 MIT_VPS4 MIT: domain c 24.0 1.5E+02 0.0032 20.8 4.0 29 13-41 7-35 (75)
77 cd02683 MIT_1 MIT: domain cont 23.9 2E+02 0.0044 20.5 4.7 29 13-41 7-35 (77)
78 PRK15174 Vi polysaccharide exp 23.6 7.3E+02 0.016 24.6 14.7 170 15-220 113-282 (656)
79 PF09324 DUF1981: Domain of un 23.3 2.9E+02 0.0064 19.9 5.9 35 47-81 29-67 (86)
80 PF04212 MIT: MIT (microtubule 23.2 1.7E+02 0.0038 19.8 4.2 27 14-40 7-33 (69)
81 KOG3089 Predicted DEAD-box-con 23.0 1.8E+02 0.004 25.7 5.0 81 25-116 78-160 (271)
82 PF08717 nsp8: nsp8 replicase; 22.5 72 0.0016 27.3 2.3 37 156-212 15-51 (199)
83 PF09548 Spore_III_AB: Stage I 21.9 4.4E+02 0.0095 21.4 8.1 77 16-110 68-146 (170)
84 PF00244 14-3-3: 14-3-3 protei 21.7 2.6E+02 0.0057 24.1 5.9 58 100-170 141-203 (236)
85 PF09969 DUF2203: Uncharacteri 21.4 4E+02 0.0087 20.8 7.7 66 48-113 3-68 (120)
86 PF01535 PPR: PPR repeat; Int 21.2 1.4E+02 0.0029 16.0 2.8 24 18-41 6-29 (31)
87 PRK15179 Vi polysaccharide bio 21.1 8.8E+02 0.019 24.6 12.3 30 13-42 87-116 (694)
88 KOG4507 Uncharacterized conser 21.1 76 0.0017 32.0 2.5 60 130-213 220-279 (886)
89 cd02681 MIT_calpain7_1 MIT: do 21.1 1.8E+02 0.0039 20.9 3.9 27 14-40 8-34 (76)
90 smart00745 MIT Microtubule Int 20.6 3E+02 0.0064 18.9 6.3 28 14-41 10-37 (77)
91 PF08631 SPO22: Meiosis protei 20.1 2E+02 0.0044 25.1 4.9 56 156-212 9-65 (278)
92 cd05493 Bromo_ALL-1 Bromodomai 20.1 1.2E+02 0.0026 24.3 3.1 38 101-138 74-118 (131)
93 TIGR00756 PPR pentatricopeptid 20.1 1.7E+02 0.0036 15.8 3.9 25 18-42 6-30 (35)
No 1
>COG5040 BMH1 14-3-3 family protein [Signal transduction mechanisms]
Probab=100.00 E-value=2.1e-82 Score=529.87 Aligned_cols=208 Identities=69% Similarity=1.051 Sum_probs=204.6
Q ss_pred CCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHhccCCCCCCCHHHHHHHHHHHhhhhchhhhHHHHHHhhhhhhhhcCCh
Q 027558 8 TPSPREENVYMAKLAEQAERYEEMVEFMEKVSASVESSEELTVEERNLLSVAYKNVIGARRASWRIISSIEQKEESRGNE 87 (222)
Q Consensus 8 m~~~r~~li~~AklaeqaeRy~Dm~~~mk~~i~~~~~~~~Ls~eERnLls~ayKn~i~~~R~s~R~l~~ieqk~~~~~~~ 87 (222)
|++.|++-+|+|||++|||||+||++-||.++..+ .+|+.+|||||||||||+||+||+|||++++++||++++|++
T Consensus 1 Ms~~rE~svylAkLaeqAERYe~MvenMk~vas~~---~eLsVeeRNLlSVAYKNvigaRRaSWRivsSieQKeEsk~~~ 77 (268)
T COG5040 1 MSTSREDSVYLAKLAEQAERYEEMVENMKLVASSG---QELSVEERNLLSVAYKNVIGARRASWRIVSSIEQKEESKGNT 77 (268)
T ss_pred CCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc---chhhHHHHHHHHHHHHHHhhhhhhhhhhhhhHHHHHhcCCCh
Confidence 67789999999999999999999999999999888 999999999999999999999999999999999999999999
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCCCCCCchHHHHHHhhhccccchhhhccchhHHHHHHHHHHHHHHHH
Q 027558 88 DHVSTIRDYRSKIETELSSICDGILKLLDSRLIPCASSGDSKVFYLKMKGDYHRYLAEFKTGAERKEAAESTLTAYKAAQ 167 (222)
Q Consensus 88 ~~~~~i~~yk~kie~EL~~~C~eil~lId~~Lip~~~~~eskvfy~KmkgDyyRYlaE~~~~~~~~~~~~~a~~aY~~A~ 167 (222)
.++.+|++|+++|++||..||+||+++|+++|||.+++.|++|||+|||||||||+|||..|+.+.++.+.+.++|+.|.
T Consensus 78 ~qv~lI~eyrkkiE~EL~~icddiL~vl~~hlipaa~~~EskvFyyKMKGDYyRYlAEf~~G~~~~e~a~~slE~YK~As 157 (268)
T COG5040 78 HQVELIKEYRKKIETELTKICDDILSVLEKHLIPAATTGESKVFYYKMKGDYYRYLAEFSVGEAREEAADSSLEAYKAAS 157 (268)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccccceEEEEeecchHHHHHHHhccchHhHHHHHhHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhcCCCCCcchhhhhHHHHHHHHHHhCChHHHHHHHHHhcCccccccC
Q 027558 168 DIANAELAPTHPIRLGLALNFSVFYYEILNSPDRACNLAKQVCKPEPKLIV 218 (222)
Q Consensus 168 ~~a~~~L~pt~pirLgLaLN~SVF~yEi~~~~~~A~~iAk~Afd~Ai~~~~ 218 (222)
++|...||||||||||||||||||||||+|+|++||.+||+|||+||+||-
T Consensus 158 eiA~teLpPT~PirLGLALNfSVFyYEIlnspdkAC~lAKqaFDeAI~ELD 208 (268)
T COG5040 158 EIATTELPPTHPIRLGLALNFSVFYYEILNSPDKACHLAKQAFDEAISELD 208 (268)
T ss_pred HHhhccCCCCCchhhhheecceeeeeecccCcHHHHHHHHHHHHHHHHHHh
Confidence 999999999999999999999999999999999999999999999999984
No 2
>smart00101 14_3_3 14-3-3 homologues. 14-3-3 homologues mediates signal transduction by binding to phosphoserine-containing proteins. They are involved in growth factor signalling and also interact with MEK kinases.
Probab=100.00 E-value=7.3e-80 Score=536.51 Aligned_cols=205 Identities=85% Similarity=1.204 Sum_probs=198.0
Q ss_pred hHHHHHHHHHHHHhCCHHHHHHHHHHHHhc-cCCCCCCCHHHHHHHHHHHhhhhchhhhHHHHHHhhhhhhhhcCChhhH
Q 027558 12 REENVYMAKLAEQAERYEEMVEFMEKVSAS-VESSEELTVEERNLLSVAYKNVIGARRASWRIISSIEQKEESRGNEDHV 90 (222)
Q Consensus 12 r~~li~~AklaeqaeRy~Dm~~~mk~~i~~-~~~~~~Ls~eERnLls~ayKn~i~~~R~s~R~l~~ieqk~~~~~~~~~~ 90 (222)
|++++|+||+++|||||+||+.+||++++. + +.+||.|||||||+||||+||++|+|||+|+++|++++.+|++.++
T Consensus 1 re~~v~~Aklaeq~eRyddm~~~mk~~~~~~~--~~eLt~EERnLLSvayKn~i~~~R~s~R~i~sie~ke~~~~~~~~~ 78 (244)
T smart00101 1 REENVYMAKLAEQAERYEEMVEFMEKVAKTVD--SEELTVEERNLLSVAYKNVIGARRASWRIISSIEQKEESRGNEDHV 78 (244)
T ss_pred ChHHHHHHHHHHHhcCHHHHHHHHHHHHhhcC--CccCCHHHHHHHHHHHhhhhcccHHHHHHHhHHHHhhhccCchHHH
Confidence 689999999999999999999999999987 4 1499999999999999999999999999999999998878888888
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhccCCCCCCCchHHHHHHhhhccccchhhhccchhHHHHHHHHHHHHHHHHHHH
Q 027558 91 STIRDYRSKIETELSSICDGILKLLDSRLIPCASSGDSKVFYLKMKGDYHRYLAEFKTGAERKEAAESTLTAYKAAQDIA 170 (222)
Q Consensus 91 ~~i~~yk~kie~EL~~~C~eil~lId~~Lip~~~~~eskvfy~KmkgDyyRYlaE~~~~~~~~~~~~~a~~aY~~A~~~a 170 (222)
+.+++||++|++||..+|++||++||++|||.+++++++|||+|||||||||+|||..|+++++++++|+++|++|+++|
T Consensus 79 ~~~~~yr~kie~EL~~iC~eil~lid~~Lip~~~~~eskVFy~KmKGDYyRYlaE~~~~~e~~~~~~~a~~aY~~A~e~a 158 (244)
T smart00101 79 ASIKEYRGKIETELSKICDGILKLLESHLIPSASAAESKVFYLKMKGDYHRYLAEFKTGAERKEAAENTLVAYKSAQDIA 158 (244)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhCccccCcHHHHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhcCCCCCcchhhhhHHHHHHHHHHhCChHHHHHHHHHhcCccccccC
Q 027558 171 NAELAPTHPIRLGLALNFSVFYYEILNSPDRACNLAKQVCKPEPKLIV 218 (222)
Q Consensus 171 ~~~L~pt~pirLgLaLN~SVF~yEi~~~~~~A~~iAk~Afd~Ai~~~~ 218 (222)
+.+||||||+||||+||||||||||+|+|++||++|++|||+||++|-
T Consensus 159 ~~~L~pt~PirLgLaLN~SVF~yEI~~~~~~A~~lAk~afd~Ai~~ld 206 (244)
T smart00101 159 LAELPPTHPIRLGLALNFSVFYYEILNSPDRACNLAKQAFDEAIAELD 206 (244)
T ss_pred HccCCCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhh
Confidence 989999999999999999999999999999999999999999998874
No 3
>PF00244 14-3-3: 14-3-3 protein; InterPro: IPR023410 The 14-3-3 proteins are a large family of approximately 30kDa acidic proteins which exist primarily as homo- and heterodimeric within all eukaryotic cells [, ]. There is a high degree of sequence identity and conservation between all the 14-3-3 isotypes, particularly in the regions which form the dimer interface or line the central ligand binding channel of the dimeric molecule. Each 14-3-3 protein sequence can be roughly divided into three sections: a divergent amino terminus, the conserved core region and a divergent carboxyl terminus. The conserved middle core region of the 14-3-3s encodes an amphipathic groove that forms the main functional domain, a cradle for interacting with client proteins. The monomer consists of nine helices organised in an antiparallel manner, forming an L-shaped structure. The interior of the L-structure is composed of four helices: H3 and H5, which contain many charged and polar amino acids, and H7 and H9, which contain hydrophobic amino acids. These four helices form the concave amphipathic groove that interacts with target peptides. 14-3-3 proteins mainly bind proteins containing phosphothreonine or phosphoserine motifs however exceptions to this rule do exist. Extensive investigation of the 14-3-3 binding site of the mammalian serine/threonine kinase Raf-1 has produced a consensus sequence for 14-3-3-binding, RSxpSxP (in the single-letter amino-acid code, where x denotes any amino acid and p indicates that the next residue is phosphorylated). 14-3-3 proteins appear to effect intracellular signalling in one of three ways - by direct regulation of the catalytic activity of the bound protein, by regulating interactions between the bound protein and other molecules in the cell by sequestration or modification or by controlling the subcellular localisation of the bound ligand. Proteins appear to initially bind to a single dominant site and then subsequently to many, much weaker secondary interaction sites. The 14-3-3 dimer is capable of changing the conformation of its bound ligand whilst itself undergoing minimal structural alteration. This entry represents the structural domain found in 14-3-3 proteins.; PDB: 2O8P_A 3AXY_D 2C74_A 2C63_A 4DX0_A 1YWT_A 3P1O_A 3P1N_A 4DAU_A 3U9X_A ....
Probab=100.00 E-value=4.7e-76 Score=511.24 Aligned_cols=204 Identities=64% Similarity=0.996 Sum_probs=195.7
Q ss_pred hHHHHHHHHHHHHhCCHHHHHHHHHHHHhccCCCCCCCHHHHHHHHHHHhhhhchhhhHHHHHHhhhhhhhhcCChhhHH
Q 027558 12 REENVYMAKLAEQAERYEEMVEFMEKVSASVESSEELTVEERNLLSVAYKNVIGARRASWRIISSIEQKEESRGNEDHVS 91 (222)
Q Consensus 12 r~~li~~AklaeqaeRy~Dm~~~mk~~i~~~~~~~~Ls~eERnLls~ayKn~i~~~R~s~R~l~~ieqk~~~~~~~~~~~ 91 (222)
|++++|+||+++|+|||+||+++||++++++ ++||.|||||||+||||+||++|+|||+|++++++++.+|++..++
T Consensus 1 Re~li~~Aklaeq~eRy~dmv~~mk~~~~~~---~eLt~eERnLlsvayKn~i~~~R~s~R~l~~~e~~~~~~~~~~~~~ 77 (236)
T PF00244_consen 1 REELIYLAKLAEQAERYDDMVEYMKQLIEMN---PELTEEERNLLSVAYKNVIGSRRASWRILSSIEQKEENKGNEKQVK 77 (236)
T ss_dssp HHHHHHHHHHHHHTTHHHHHHHHHHHHHHTS---S---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTTHHHHH
T ss_pred ChHHHHHHHHHHHhcCHHHHHHHHHHHHccC---CCCCHHHHHHHHHHHHhccccchHHHHhhhhHhhhhcccchhHHHH
Confidence 8999999999999999999999999999998 9999999999999999999999999999999999999988899999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhccCCCCCCCchHHHHHHhhhccccchhhhccchhHHHHHHHHHHHHHHHHHHHH
Q 027558 92 TIRDYRSKIETELSSICDGILKLLDSRLIPCASSGDSKVFYLKMKGDYHRYLAEFKTGAERKEAAESTLTAYKAAQDIAN 171 (222)
Q Consensus 92 ~i~~yk~kie~EL~~~C~eil~lId~~Lip~~~~~eskvfy~KmkgDyyRYlaE~~~~~~~~~~~~~a~~aY~~A~~~a~ 171 (222)
.+++||++|++||..+|++|+++||++|+|.+++++++|||+|||||||||+|||..|+++++++++|.++|++|+++|+
T Consensus 78 ~i~~yk~kie~EL~~~C~eii~lId~~Lip~~~~~eskvfy~KmkgDyyRYlaE~~~~~~~~~~~~~a~~aY~~A~~~a~ 157 (236)
T PF00244_consen 78 LIKDYKKKIEDELIDICNEIIRLIDKSLIPSATSPESKVFYYKMKGDYYRYLAEFDSGDEKKEAAEKALEAYEEALEIAK 157 (236)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHS-SHHHHHHHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccchhHHHHHHHHhccccccccccccchhhHHHHHHHHHhhhhHHHHHh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hcCCCCCcchhhhhHHHHHHHHHHhCChHHHHHHHHHhcCccccccC
Q 027558 172 AELAPTHPIRLGLALNFSVFYYEILNSPDRACNLAKQVCKPEPKLIV 218 (222)
Q Consensus 172 ~~L~pt~pirLgLaLN~SVF~yEi~~~~~~A~~iAk~Afd~Ai~~~~ 218 (222)
.+||||||+||||+||||||||||+|++++||+||++|||+|++++-
T Consensus 158 ~~L~~~~p~rLgl~LN~svF~yei~~~~~~A~~ia~~afd~a~~~l~ 204 (236)
T PF00244_consen 158 KELPPTHPLRLGLALNYSVFYYEILNDPEKAIEIAKQAFDEAISELD 204 (236)
T ss_dssp HHSCTTSHHHHHHHHHHHHHHHHTSS-HHHHHHHHHHHHHHHHHGGG
T ss_pred cccCCCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhhhc
Confidence 88999999999999999999999999999999999999999999874
No 4
>KOG0841 consensus Multifunctional chaperone (14-3-3 family) [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1.9e-71 Score=475.28 Aligned_cols=205 Identities=73% Similarity=1.068 Sum_probs=200.5
Q ss_pred ChHHHHHHHHHHHHhCCHHHHHHHHHHHHhccCCCCCCCHHHHHHHHHHHhhhhchhhhHHHHHHhhhhhhhhcCChhhH
Q 027558 11 PREENVYMAKLAEQAERYEEMVEFMEKVSASVESSEELTVEERNLLSVAYKNVIGARRASWRIISSIEQKEESRGNEDHV 90 (222)
Q Consensus 11 ~r~~li~~AklaeqaeRy~Dm~~~mk~~i~~~~~~~~Ls~eERnLls~ayKn~i~~~R~s~R~l~~ieqk~~~~~~~~~~ 90 (222)
+|+++|++||+++|+|||+||+.+||.+++.+ .+||.|||||||++|||+||++|++||+|++|||+++++|++.++
T Consensus 1 ~~~~~v~~akl~eqaery~~m~~~Mk~v~~~~---~eLtveernllsvayknVigarrasWriisSiEqKees~~~e~~v 77 (247)
T KOG0841|consen 1 EREELVYKAKLAEQAERYDEMVEAMKKVAELD---VELTVEERNLLSVAYKNVIGARRASWRIISSIEQKEESKGNEEKV 77 (247)
T ss_pred CHHHHHHHHHHHHHHHhHHHHHHHHHhhcccc---hhhhHHHHhhhhhhhccccchhHHHHHHhhhhhhcccCCCcchHH
Confidence 48999999999999999999999999999988 999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhccCCCCCC-CchHHHHHHhhhccccchhhhccchhHHHHHHHHHHHHHHHHHH
Q 027558 91 STIRDYRSKIETELSSICDGILKLLDSRLIPCASS-GDSKVFYLKMKGDYHRYLAEFKTGAERKEAAESTLTAYKAAQDI 169 (222)
Q Consensus 91 ~~i~~yk~kie~EL~~~C~eil~lId~~Lip~~~~-~eskvfy~KmkgDyyRYlaE~~~~~~~~~~~~~a~~aY~~A~~~ 169 (222)
..+..||++|+.||..+|++++.++|.+|+|+++. .|++|||+|||||||||+|||..|++|++++++++++|+.|.++
T Consensus 78 ~~i~~yr~~vE~El~~ic~~iL~lld~~Li~sa~~~~es~vf~~kmKgdy~rylae~~sg~erke~~~~sl~aYk~a~~i 157 (247)
T KOG0841|consen 78 KMIKEYRQKVETELAKICDDILSLLDKHLIPSATLPGESKVFYLKMKGDYYRYLAEFASGDERKEAADQSLEAYKEASEI 157 (247)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccccccceeeeeccchhHHHHHHhcchhHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999888 88999999999999999999999999999999999999999999
Q ss_pred HHhcCCCCCcchhhhhHHHHHHHHHHhCChHHHHHHHHHhcCccccccC
Q 027558 170 ANAELAPTHPIRLGLALNFSVFYYEILNSPDRACNLAKQVCKPEPKLIV 218 (222)
Q Consensus 170 a~~~L~pt~pirLgLaLN~SVF~yEi~~~~~~A~~iAk~Afd~Ai~~~~ 218 (222)
++..|+|||||||||+||||||||||+|.|++||.|||+|||+||.||-
T Consensus 158 a~~~l~PthPirLgLaLnfSvf~yeilnsPe~ac~lak~a~d~ai~eld 206 (247)
T KOG0841|consen 158 AKAELQPTHPIRLGLALNFSVFYYEILNSPERACSLAKQAFDEAIAELD 206 (247)
T ss_pred HHhcCCCCCchHHHHHHHHHHHHHHHHcChHHHHHHHHHHHHHHHHhhc
Confidence 9989999999999999999999999999999999999999999999873
No 5
>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H ....
Probab=96.33 E-value=0.0055 Score=43.04 Aligned_cols=54 Identities=24% Similarity=0.353 Sum_probs=47.5
Q ss_pred HHHHHHHHHHHHHHHHhcCCCCCcchhhhhHHHHHHHHHHhCChHHHHHHHHHhcC
Q 027558 156 AESTLTAYKAAQDIANAELAPTHPIRLGLALNFSVFYYEILNSPDRACNLAKQVCK 211 (222)
Q Consensus 156 ~~~a~~aY~~A~~~a~~~L~pt~pirLgLaLN~SVF~yEi~~~~~~A~~iAk~Afd 211 (222)
-++|.+.|++|+++ ...+++.||...-...|.+..++. +|+.++|.+..++|++
T Consensus 21 ~~~A~~~~~~al~~-~~~~~~~~~~~a~~~~~lg~~~~~-~g~~~~A~~~~~~al~ 74 (78)
T PF13424_consen 21 YDEALDYYEKALDI-EEQLGDDHPDTANTLNNLGECYYR-LGDYEEALEYYQKALD 74 (78)
T ss_dssp HHHHHHHHHHHHHH-HHHTTTHHHHHHHHHHHHHHHHHH-TTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH-HHHHCCCCHHHHHHHHHHHHHHHH-cCCHHHHHHHHHHHHh
Confidence 35799999999999 567999998888888899999887 7999999999999875
No 6
>KOG1840 consensus Kinesin light chain [Cytoskeleton]
Probab=95.38 E-value=1.1 Score=43.59 Aligned_cols=186 Identities=16% Similarity=0.189 Sum_probs=123.8
Q ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHhc--cC-CCCCCCH-HHHHHHHHHHhhhhchhhhHHHHHH-hhhhhhhhcCC-
Q 027558 13 EENVYMAKLAEQAERYEEMVEFMEKVSAS--VE-SSEELTV-EERNLLSVAYKNVIGARRASWRIIS-SIEQKEESRGN- 86 (222)
Q Consensus 13 ~~li~~AklaeqaeRy~Dm~~~mk~~i~~--~~-~~~~Ls~-eERnLls~ayKn~i~~~R~s~R~l~-~ieqk~~~~~~- 86 (222)
..+.++|.+..+.|+|+.++...|+.++. +. +...+-. ...+-|++.|-+. +..+.|..+.. ++...+...|.
T Consensus 200 ~~~~~La~~y~~~g~~e~A~~l~k~Al~~l~k~~G~~hl~va~~l~~~a~~y~~~-~k~~eAv~ly~~AL~i~e~~~G~~ 278 (508)
T KOG1840|consen 200 RTLRNLAEMYAVQGRLEKAEPLCKQALRILEKTSGLKHLVVASMLNILALVYRSL-GKYDEAVNLYEEALTIREEVFGED 278 (508)
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHccCccCHHHHHHHHHHHHHHHHh-ccHHHHHHHHHHHHHHHHHhcCCC
Confidence 34567889999999999999999998865 10 1112222 2444577776553 44566666664 33334444443
Q ss_pred -hhhHHHHHH-----HHHHHHHHHHHHHHHHHHHhhhccCCCCCCCchHHHHHHhhhccccchhhhccchhHHHHHHHHH
Q 027558 87 -EDHVSTIRD-----YRSKIETELSSICDGILKLLDSRLIPCASSGDSKVFYLKMKGDYHRYLAEFKTGAERKEAAESTL 160 (222)
Q Consensus 87 -~~~~~~i~~-----yk~kie~EL~~~C~eil~lId~~Lip~~~~~eskvfy~KmkgDyyRYlaE~~~~~~~~~~~~~a~ 160 (222)
+.....+.+ ++.-=-.|-...|+.+++|..+.+ ....++-.-- +.++..-.....-.+.|.
T Consensus 279 h~~va~~l~nLa~ly~~~GKf~EA~~~~e~Al~I~~~~~--~~~~~~v~~~-----------l~~~~~~~~~~~~~Eea~ 345 (508)
T KOG1840|consen 279 HPAVAATLNNLAVLYYKQGKFAEAEEYCERALEIYEKLL--GASHPEVAAQ-----------LSELAAILQSMNEYEEAK 345 (508)
T ss_pred CHHHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHhh--ccChHHHHHH-----------HHHHHHHHHHhcchhHHH
Confidence 333333332 444456788999999999999843 3333332221 222222222223367889
Q ss_pred HHHHHHHHHHHhcCCCCCcchhhhhHHHHHHHHHHhCChHHHHHHHHHhcCcc
Q 027558 161 TAYKAAQDIANAELAPTHPIRLGLALNFSVFYYEILNSPDRACNLAKQVCKPE 213 (222)
Q Consensus 161 ~aY~~A~~~a~~~L~pt~pirLgLaLN~SVF~yEi~~~~~~A~~iAk~Afd~A 213 (222)
..|+.|+++....+.+.||.-=|+--|+++.|+- +|..++|-++.++|....
T Consensus 346 ~l~q~al~i~~~~~g~~~~~~a~~~~nl~~l~~~-~gk~~ea~~~~k~ai~~~ 397 (508)
T KOG1840|consen 346 KLLQKALKIYLDAPGEDNVNLAKIYANLAELYLK-MGKYKEAEELYKKAIQIL 397 (508)
T ss_pred HHHHHHHHHHHhhccccchHHHHHHHHHHHHHHH-hcchhHHHHHHHHHHHHH
Confidence 9999999999988999999999999999999986 799999999999886543
No 7
>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70).
Probab=92.11 E-value=3.6 Score=40.11 Aligned_cols=54 Identities=15% Similarity=0.156 Sum_probs=31.0
Q ss_pred HHHHHHHHHHHHHHHHhcCCCCCcchhhhhHHHHHHHHHHhCChHHHHHHHHHhcC
Q 027558 156 AESTLTAYKAAQDIANAELAPTHPIRLGLALNFSVFYYEILNSPDRACNLAKQVCK 211 (222)
Q Consensus 156 ~~~a~~aY~~A~~~a~~~L~pt~pirLgLaLN~SVF~yEi~~~~~~A~~iAk~Afd 211 (222)
.+.|...|++|+++.. ...+.++..++ .+|.+..+|+-.|+.++|..+..+|..
T Consensus 483 ~~~A~~~~~~Al~l~p-~~~~~~~~~~~-l~~~a~~~~~~~~~~~eA~~~~~kAl~ 536 (615)
T TIGR00990 483 FDEAIEKFDTAIELEK-ETKPMYMNVLP-LINKALALFQWKQDFIEAENLCEKALI 536 (615)
T ss_pred HHHHHHHHHHHHhcCC-ccccccccHHH-HHHHHHHHHHHhhhHHHHHHHHHHHHh
Confidence 3567777777776543 23333332222 345455556656777787777776653
No 8
>PF12862 Apc5: Anaphase-promoting complex subunit 5
Probab=89.21 E-value=1.2 Score=32.84 Aligned_cols=68 Identities=19% Similarity=0.233 Sum_probs=46.7
Q ss_pred ccchhhhccchhHHHHHHHHHHHHHHHHHHHHhcCCCCCcchhhhh-HHHHHHHHHHhCChHHHHHHHHHhcCcc
Q 027558 140 HRYLAEFKTGAERKEAAESTLTAYKAAQDIANAELAPTHPIRLGLA-LNFSVFYYEILNSPDRACNLAKQVCKPE 213 (222)
Q Consensus 140 yRYlaE~~~~~~~~~~~~~a~~aY~~A~~~a~~~L~pt~pirLgLa-LN~SVF~yEi~~~~~~A~~iAk~Afd~A 213 (222)
.+|+--+..++ -..|.+...+.++.+..+..+.+...+..+ ||.+.+++. +|++++|....++|.+-|
T Consensus 3 l~~~~~~~~~d-----y~~A~d~L~~~fD~~~~~~~~~~~~~~~~all~lA~~~~~-~G~~~~A~~~l~eAi~~A 71 (94)
T PF12862_consen 3 LRYLNALRSGD-----YSEALDALHRYFDYAKQSNNSSSNSGLAYALLNLAELHRR-FGHYEEALQALEEAIRLA 71 (94)
T ss_pred HHHHHHHHcCC-----HHHHHHHHHHHHHHHhhcccchhhHHHHHHHHHHHHHHHH-hCCHHHHHHHHHHHHHHH
Confidence 34444444443 235677778888888776666654455544 788888887 699999998888887654
No 9
>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A ....
Probab=82.79 E-value=4.8 Score=26.93 Aligned_cols=47 Identities=17% Similarity=0.241 Sum_probs=36.7
Q ss_pred HHHHHHHHHHHHHHHHhcCCCCCcchhhhhHHHHHHHHHHhC-ChHHHHHHHHHhcC
Q 027558 156 AESTLTAYKAAQDIANAELAPTHPIRLGLALNFSVFYYEILN-SPDRACNLAKQVCK 211 (222)
Q Consensus 156 ~~~a~~aY~~A~~~a~~~L~pt~pirLgLaLN~SVF~yEi~~-~~~~A~~iAk~Afd 211 (222)
-+.|...|++|+++ . |-.-.+..|.++-|+. +| ++++|+...++|+.
T Consensus 19 ~~~A~~~~~~ai~~-----~---p~~~~~~~~~g~~~~~-~~~~~~~A~~~~~~al~ 66 (69)
T PF13414_consen 19 YEEAIEYFEKAIEL-----D---PNNAEAYYNLGLAYMK-LGKDYEEAIEDFEKALK 66 (69)
T ss_dssp HHHHHHHHHHHHHH-----S---TTHHHHHHHHHHHHHH-TTTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHc-----C---CCCHHHHHHHHHHHHH-hCccHHHHHHHHHHHHH
Confidence 45789999999875 2 4445588888888887 57 79999999988764
No 10
>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A ....
Probab=81.99 E-value=3.6 Score=23.56 Aligned_cols=28 Identities=29% Similarity=0.362 Sum_probs=24.3
Q ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHhcc
Q 027558 15 NVYMAKLAEQAERYEEMVEFMEKVSASV 42 (222)
Q Consensus 15 li~~AklaeqaeRy~Dm~~~mk~~i~~~ 42 (222)
+..++.+..+.|+|+++++++++.+..+
T Consensus 4 ~~~lg~~~~~~~~~~~A~~~~~~al~l~ 31 (34)
T PF07719_consen 4 WYYLGQAYYQLGNYEEAIEYFEKALELD 31 (34)
T ss_dssp HHHHHHHHHHTT-HHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHHHC
Confidence 4578899999999999999999999876
No 11
>PF04781 DUF627: Protein of unknown function (DUF627); InterPro: IPR006866 This domain represents the N-terminal region of several plant proteins of unknown function.
Probab=80.68 E-value=4.5 Score=31.56 Aligned_cols=58 Identities=10% Similarity=0.233 Sum_probs=40.2
Q ss_pred HHHhhhccCCCCCCCchHHHHHHhhhccccchhhhccchh-HHHHHHHHHHHHHHHHHHH
Q 027558 112 LKLLDSRLIPCASSGDSKVFYLKMKGDYHRYLAEFKTGAE-RKEAAESTLTAYKAAQDIA 170 (222)
Q Consensus 112 l~lId~~Lip~~~~~eskvfy~KmkgDyyRYlaE~~~~~~-~~~~~~~a~~aY~~A~~~a 170 (222)
+++|.+.+... ...++..|.+...|+.|..+|....+.+ +....-.|.++|.+|..++
T Consensus 16 L~iied~i~~h-~~~~~~~~lh~~QG~if~~lA~~ten~d~k~~yLl~sve~~s~a~~Ls 74 (111)
T PF04781_consen 16 LEIIEDLISRH-GEDESSWLLHRLQGTIFYKLAKKTENPDVKFRYLLGSVECFSRAVELS 74 (111)
T ss_pred HHHHHHHHHHc-cCCCchHHHHHHHhHHHHHHHHhccCchHHHHHHHHhHHHHHHHhccC
Confidence 34444444333 2333444889999999999999876654 5567788999999997654
No 12
>PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A.
Probab=79.94 E-value=1.9 Score=25.82 Aligned_cols=24 Identities=33% Similarity=0.504 Sum_probs=13.3
Q ss_pred HHHHHHHHHHHHHHHHhcCCCCCc
Q 027558 156 AESTLTAYKAAQDIANAELAPTHP 179 (222)
Q Consensus 156 ~~~a~~aY~~A~~~a~~~L~pt~p 179 (222)
.+.|...|++|+++.+.-++|.||
T Consensus 18 ~~~A~~~~~~al~~~~~~~G~~Hp 41 (42)
T PF13374_consen 18 YEEALELLEEALEIRERLLGPDHP 41 (42)
T ss_dssp HHHHHHHHHHHHHHH---------
T ss_pred cchhhHHHHHHHHHHHHHhccccc
Confidence 357899999999999888899998
No 13
>PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A.
Probab=79.68 E-value=4.2 Score=23.02 Aligned_cols=28 Identities=14% Similarity=0.291 Sum_probs=25.2
Q ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHhcc
Q 027558 15 NVYMAKLAEQAERYEEMVEFMEKVSASV 42 (222)
Q Consensus 15 li~~AklaeqaeRy~Dm~~~mk~~i~~~ 42 (222)
+..+|.+..+.|+++++++.++++++..
T Consensus 3 ~~~~a~~~~~~g~~~~A~~~~~~~~~~~ 30 (33)
T PF13174_consen 3 LYRLARCYYKLGDYDEAIEYFQRLIKRY 30 (33)
T ss_dssp HHHHHHHHHHHCHHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHccCHHHHHHHHHHHHHHC
Confidence 5678999999999999999999999765
No 14
>PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A ....
Probab=77.81 E-value=5.3 Score=22.96 Aligned_cols=29 Identities=31% Similarity=0.393 Sum_probs=25.9
Q ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHhcc
Q 027558 14 ENVYMAKLAEQAERYEEMVEFMEKVSASV 42 (222)
Q Consensus 14 ~li~~AklaeqaeRy~Dm~~~mk~~i~~~ 42 (222)
-+..++++..+.|+++.++.++++.++++
T Consensus 3 ~~~~lg~~y~~~~~~~~A~~~~~~a~~~~ 31 (34)
T PF13181_consen 3 AYYNLGKIYEQLGDYEEALEYFEKALELN 31 (34)
T ss_dssp HHHHHHHHHHHTTSHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhhC
Confidence 35678999999999999999999999876
No 15
>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein. This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Probab=74.79 E-value=85 Score=30.41 Aligned_cols=28 Identities=11% Similarity=0.064 Sum_probs=17.0
Q ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHhcc
Q 027558 15 NVYMAKLAEQAERYEEMVEFMEKVSASV 42 (222)
Q Consensus 15 li~~AklaeqaeRy~Dm~~~mk~~i~~~ 42 (222)
...++.+..+.|+|++++..+++.+..+
T Consensus 706 ~~~~~~~~~~~g~~~~A~~~~~~~~~~~ 733 (899)
T TIGR02917 706 FELEGDLYLRQKDYPAAIQAYRKALKRA 733 (899)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHhhC
Confidence 3445566666666666666666666543
No 16
>PF13428 TPR_14: Tetratricopeptide repeat
Probab=73.17 E-value=9 Score=23.88 Aligned_cols=29 Identities=10% Similarity=0.074 Sum_probs=26.2
Q ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHhcc
Q 027558 14 ENVYMAKLAEQAERYEEMVEFMEKVSASV 42 (222)
Q Consensus 14 ~li~~AklaeqaeRy~Dm~~~mk~~i~~~ 42 (222)
-...+|+...+.|+++++.+.++++++.+
T Consensus 3 ~~~~la~~~~~~G~~~~A~~~~~~~l~~~ 31 (44)
T PF13428_consen 3 AWLALARAYRRLGQPDEAERLLRRALALD 31 (44)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHC
Confidence 35678999999999999999999999876
No 17
>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A ....
Probab=72.81 E-value=9.4 Score=21.97 Aligned_cols=28 Identities=18% Similarity=0.184 Sum_probs=24.1
Q ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHhcc
Q 027558 15 NVYMAKLAEQAERYEEMVEFMEKVSASV 42 (222)
Q Consensus 15 li~~AklaeqaeRy~Dm~~~mk~~i~~~ 42 (222)
+..++.+..+.|+|++++.+.++.++.+
T Consensus 4 ~~~~g~~~~~~~~~~~A~~~~~~al~~~ 31 (34)
T PF00515_consen 4 YYNLGNAYFQLGDYEEALEYYQRALELD 31 (34)
T ss_dssp HHHHHHHHHHTT-HHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHhCCchHHHHHHHHHHHHC
Confidence 4568888999999999999999999886
No 18
>KOG1840 consensus Kinesin light chain [Cytoskeleton]
Probab=72.14 E-value=1e+02 Score=30.15 Aligned_cols=178 Identities=17% Similarity=0.139 Sum_probs=108.5
Q ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHhccC-CCCCCCHHHHHHHHHH---------HhhhhchhhhHHHHHHhhhhhhh
Q 027558 13 EENVYMAKLAEQAERYEEMVEFMEKVSASVE-SSEELTVEERNLLSVA---------YKNVIGARRASWRIISSIEQKEE 82 (222)
Q Consensus 13 ~~li~~AklaeqaeRy~Dm~~~mk~~i~~~~-~~~~Ls~eERnLls~a---------yKn~i~~~R~s~R~l~~ieqk~~ 82 (222)
.-+..+|.++-..|+|+++-.+++..+++.+ ..+....+--..|+.. |...+.=.+.+.+++ ++...
T Consensus 284 ~~l~nLa~ly~~~GKf~EA~~~~e~Al~I~~~~~~~~~~~v~~~l~~~~~~~~~~~~~Eea~~l~q~al~i~---~~~~g 360 (508)
T KOG1840|consen 284 ATLNNLAVLYYKQGKFAEAEEYCERALEIYEKLLGASHPEVAAQLSELAAILQSMNEYEEAKKLLQKALKIY---LDAPG 360 (508)
T ss_pred HHHHHHHHHHhccCChHHHHHHHHHHHHHHHHhhccChHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHH---Hhhcc
Confidence 3466789999999999999999999887631 0122333322222221 222222233333333 22211
Q ss_pred hcCChhhHHHHH-----H-HHHHHHHHHHHHHHHHHHHhhhccCCCCCCCchHHHHHHhhhccccchhhhccchhHHHHH
Q 027558 83 SRGNEDHVSTIR-----D-YRSKIETELSSICDGILKLLDSRLIPCASSGDSKVFYLKMKGDYHRYLAEFKTGAERKEAA 156 (222)
Q Consensus 83 ~~~~~~~~~~i~-----~-yk~kie~EL~~~C~eil~lId~~Lip~~~~~eskvfy~KmkgDyyRYlaE~~~~~~~~~~~ 156 (222)
.. + ..+.-+. - ++.-=.+|-..+-..+|+...... ...+...-.+++.|-.+|+|=. -.
T Consensus 361 ~~-~-~~~a~~~~nl~~l~~~~gk~~ea~~~~k~ai~~~~~~~--~~~~~~~~~~l~~la~~~~~~k-----------~~ 425 (508)
T KOG1840|consen 361 ED-N-VNLAKIYANLAELYLKMGKYKEAEELYKKAIQILRELL--GKKDYGVGKPLNQLAEAYEELK-----------KY 425 (508)
T ss_pred cc-c-hHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhcc--cCcChhhhHHHHHHHHHHHHhc-----------cc
Confidence 10 1 0111111 0 122223555666777777776554 2234455677788877775322 24
Q ss_pred HHHHHHHHHHHHHHHhcCCCCCcchhhhhHHHHHHHHHHhCChHHHHHHHHHhc
Q 027558 157 ESTLTAYKAAQDIANAELAPTHPIRLGLALNFSVFYYEILNSPDRACNLAKQVC 210 (222)
Q Consensus 157 ~~a~~aY~~A~~~a~~~L~pt~pirLgLaLN~SVF~yEi~~~~~~A~~iAk~Af 210 (222)
..|.+.|.++..|. ....|.||--++..+|.+.-| +-+|+.++|++++..+.
T Consensus 426 ~~a~~l~~~~~~i~-~~~g~~~~~~~~~~~nL~~~Y-~~~g~~e~a~~~~~~~~ 477 (508)
T KOG1840|consen 426 EEAEQLFEEAKDIM-KLCGPDHPDVTYTYLNLAALY-RAQGNYEAAEELEEKVL 477 (508)
T ss_pred chHHHHHHHHHHHH-HHhCCCCCchHHHHHHHHHHH-HHcccHHHHHHHHHHHH
Confidence 56789999999999 789999999999999999865 55799999999986553
No 19
>PF13431 TPR_17: Tetratricopeptide repeat
Probab=69.41 E-value=4.7 Score=24.20 Aligned_cols=34 Identities=24% Similarity=0.355 Sum_probs=24.0
Q ss_pred HHHHHHHHHHhcCCCCCcchhhhhHHHHHHHHHHhCChHHHHH
Q 027558 162 AYKAAQDIANAELAPTHPIRLGLALNFSVFYYEILNSPDRACN 204 (222)
Q Consensus 162 aY~~A~~~a~~~L~pt~pirLgLaLN~SVF~yEi~~~~~~A~~ 204 (222)
+|++|++ +.|.|| ....|++++|+. .|+.++|++
T Consensus 1 ~y~kAie-----~~P~n~---~a~~nla~~~~~-~g~~~~A~~ 34 (34)
T PF13431_consen 1 CYKKAIE-----LNPNNA---EAYNNLANLYLN-QGDYEEAIA 34 (34)
T ss_pred ChHHHHH-----HCCCCH---HHHHHHHHHHHH-CcCHHhhcC
Confidence 3667764 445554 456788998886 699999863
No 20
>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H ....
Probab=64.70 E-value=7.4 Score=26.74 Aligned_cols=38 Identities=21% Similarity=0.223 Sum_probs=30.3
Q ss_pred CcchhhhhHHHHHHHHHHhCChHHHHHHHHHhcCcccccc
Q 027558 178 HPIRLGLALNFSVFYYEILNSPDRACNLAKQVCKPEPKLI 217 (222)
Q Consensus 178 ~pirLgLaLN~SVF~yEi~~~~~~A~~iAk~Afd~Ai~~~ 217 (222)
||.......|.+..|++ +|+.++|+..-++|.+- .+.+
T Consensus 1 H~~~a~~~~~la~~~~~-~~~~~~A~~~~~~al~~-~~~~ 38 (78)
T PF13424_consen 1 HPDTANAYNNLARVYRE-LGRYDEALDYYEKALDI-EEQL 38 (78)
T ss_dssp -HHHHHHHHHHHHHHHH-TT-HHHHHHHHHHHHHH-HHHT
T ss_pred CHHHHHHHHHHHHHHHH-cCCHHHHHHHHHHHHHH-HHHH
Confidence 78888888999999997 69999999999999876 4443
No 21
>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A.
Probab=63.96 E-value=14 Score=22.02 Aligned_cols=27 Identities=22% Similarity=0.356 Sum_probs=22.3
Q ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHhc
Q 027558 15 NVYMAKLAEQAERYEEMVEFMEKVSAS 41 (222)
Q Consensus 15 li~~AklaeqaeRy~Dm~~~mk~~i~~ 41 (222)
+..+|.+..+.|.|+.++++.++....
T Consensus 2 l~~Lg~~~~~~g~~~~Ai~~y~~aL~l 28 (36)
T PF13176_consen 2 LNNLGRIYRQQGDYEKAIEYYEQALAL 28 (36)
T ss_dssp HHHHHHHHHHCT-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 467899999999999999999996543
No 22
>PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional
Probab=63.44 E-value=1.1e+02 Score=32.00 Aligned_cols=72 Identities=13% Similarity=0.015 Sum_probs=44.3
Q ss_pred chHHHHHHhhhccccc------hhhhccchhHHHHHHHHHHHHHHHHHHHHhcCCCCCcchhhhhHHHHHHHHHHhCChH
Q 027558 127 DSKVFYLKMKGDYHRY------LAEFKTGAERKEAAESTLTAYKAAQDIANAELAPTHPIRLGLALNFSVFYYEILNSPD 200 (222)
Q Consensus 127 eskvfy~KmkgDyyRY------laE~~~~~~~~~~~~~a~~aY~~A~~~a~~~L~pt~pirLgLaLN~SVF~yEi~~~~~ 200 (222)
....||++..|||+.- +|++-. +-.-.++|..+|++++++ .|.||. +||+=-|+|.-. +.+
T Consensus 100 ~~ve~~~~~i~~~~~~k~Al~~LA~~Yd---k~g~~~ka~~~yer~L~~-----D~~n~~----aLNn~AY~~ae~-dL~ 166 (906)
T PRK14720 100 AIVEHICDKILLYGENKLALRTLAEAYA---KLNENKKLKGVWERLVKA-----DRDNPE----IVKKLATSYEEE-DKE 166 (906)
T ss_pred hHHHHHHHHHHhhhhhhHHHHHHHHHHH---HcCChHHHHHHHHHHHhc-----CcccHH----HHHHHHHHHHHh-hHH
Confidence 4455666666665432 233221 112245788899988753 477764 555544444445 999
Q ss_pred HHHHHHHHhcC
Q 027558 201 RACNLAKQVCK 211 (222)
Q Consensus 201 ~A~~iAk~Afd 211 (222)
+|.+++++|..
T Consensus 167 KA~~m~~KAV~ 177 (906)
T PRK14720 167 KAITYLKKAIY 177 (906)
T ss_pred HHHHHHHHHHH
Confidence 99999999964
No 23
>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70).
Probab=61.67 E-value=1.6e+02 Score=28.62 Aligned_cols=47 Identities=13% Similarity=0.186 Sum_probs=28.4
Q ss_pred HHHHHHHHHHHHHHHhcCCCCCcchhhhhHHHHHHHHHHhCChHHHHHHHHHhcCc
Q 027558 157 ESTLTAYKAAQDIANAELAPTHPIRLGLALNFSVFYYEILNSPDRACNLAKQVCKP 212 (222)
Q Consensus 157 ~~a~~aY~~A~~~a~~~L~pt~pirLgLaLN~SVF~yEi~~~~~~A~~iAk~Afd~ 212 (222)
+.|...|++|+. +.|.+|. +..+++..+.+ .|+.++|+....+|+.-
T Consensus 450 ~eA~~~~~~al~-----~~P~~~~---~~~~lg~~~~~-~g~~~~A~~~~~~Al~l 496 (615)
T TIGR00990 450 ASSMATFRRCKK-----NFPEAPD---VYNYYGELLLD-QNKFDEAIEKFDTAIEL 496 (615)
T ss_pred HHHHHHHHHHHH-----hCCCChH---HHHHHHHHHHH-ccCHHHHHHHHHHHHhc
Confidence 456666666653 3345543 33444555554 68999998887777653
No 24
>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein. This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Probab=60.86 E-value=1.6e+02 Score=28.42 Aligned_cols=61 Identities=20% Similarity=0.181 Sum_probs=49.4
Q ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHhccCCCCCCCHHHHHHHHHHHhhhhchhhhHHHHHHhhh
Q 027558 13 EENVYMAKLAEQAERYEEMVEFMEKVSASVESSEELTVEERNLLSVAYKNVIGARRASWRIISSIE 78 (222)
Q Consensus 13 ~~li~~AklaeqaeRy~Dm~~~mk~~i~~~~~~~~Ls~eERnLls~ayKn~i~~~R~s~R~l~~ie 78 (222)
+.++..|+.+..-|+|++++..+++.++.. |+ +.+=+..+..+|-. .|....+...+....
T Consensus 23 ~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~---p~-~~~~~~~l~~~~~~-~g~~~~A~~~~~~~~ 83 (899)
T TIGR02917 23 ESLIEAAKSYLQKNKYKAAIIQLKNALQKD---PN-DAEARFLLGKIYLA-LGDYAAAEKELRKAL 83 (899)
T ss_pred HHHHHHHHHHHHcCChHhHHHHHHHHHHhC---CC-CHHHHHHHHHHHHH-cCCHHHHHHHHHHHH
Confidence 567889999999999999999999999875 44 67788888888776 577777877776543
No 25
>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B.
Probab=60.52 E-value=22 Score=23.34 Aligned_cols=41 Identities=20% Similarity=0.187 Sum_probs=30.4
Q ss_pred HHHHHHHHhCCHHHHHHHHHHHHhccCCCCCCCHHHHHHHHHHHh
Q 027558 17 YMAKLAEQAERYEEMVEFMEKVSASVESSEELTVEERNLLSVAYK 61 (222)
Q Consensus 17 ~~AklaeqaeRy~Dm~~~mk~~i~~~~~~~~Ls~eERnLls~ayK 61 (222)
.+|...-+.|+|++++..+++++..+ |. +.+=+..+..++-
T Consensus 2 ~~a~~~~~~g~~~~A~~~~~~~l~~~---P~-~~~a~~~lg~~~~ 42 (65)
T PF13432_consen 2 ALARALYQQGDYDEAIAAFEQALKQD---PD-NPEAWYLLGRILY 42 (65)
T ss_dssp HHHHHHHHCTHHHHHHHHHHHHHCCS---TT-HHHHHHHHHHHHH
T ss_pred hHHHHHHHcCCHHHHHHHHHHHHHHC---CC-CHHHHHHHHHHHH
Confidence 46788889999999999999999765 43 5555555555554
No 26
>KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms]
Probab=59.21 E-value=79 Score=32.47 Aligned_cols=97 Identities=19% Similarity=0.157 Sum_probs=64.3
Q ss_pred HHHHHHHHHHHHHHhhhccCCCCCCCchHHHHHHhhhccccchhhhc-cchhHHHHHHHHHHHHHHHHHHHHhcCCCCCc
Q 027558 101 ETELSSICDGILKLLDSRLIPCASSGDSKVFYLKMKGDYHRYLAEFK-TGAERKEAAESTLTAYKAAQDIANAELAPTHP 179 (222)
Q Consensus 101 e~EL~~~C~eil~lId~~Lip~~~~~eskvfy~KmkgDyyRYlaE~~-~~~~~~~~~~~a~~aY~~A~~~a~~~L~pt~p 179 (222)
-+|..++.+.++++... ....-+---+++-|=.|-..|-.. ..++|.....++.++|++|.+ +.|+||
T Consensus 410 ~eegldYA~kai~~~~~------~~~~l~~~~~l~lGi~y~~~A~~a~~~seR~~~h~kslqale~av~-----~d~~dp 478 (799)
T KOG4162|consen 410 VEEGLDYAQKAISLLGG------QRSHLKPRGYLFLGIAYGFQARQANLKSERDALHKKSLQALEEAVQ-----FDPTDP 478 (799)
T ss_pred hhhHHHHHHHHHHHhhh------hhhhhhhhHHHHHHHHHHhHhhcCCChHHHHHHHHHHHHHHHHHHh-----cCCCCc
Confidence 35666666666553311 111111222566777776666554 455777888999999999874 678999
Q ss_pred chhhhhHHHHHHHHHHhCChHHHHHHHHHhcCc
Q 027558 180 IRLGLALNFSVFYYEILNSPDRACNLAKQVCKP 212 (222)
Q Consensus 180 irLgLaLN~SVF~yEi~~~~~~A~~iAk~Afd~ 212 (222)
-...+.|++|-+ .++.+.|.+.++.+..-
T Consensus 479 ---~~if~lalq~A~-~R~l~sAl~~~~eaL~l 507 (799)
T KOG4162|consen 479 ---LVIFYLALQYAE-QRQLTSALDYAREALAL 507 (799)
T ss_pred ---hHHHHHHHHHHH-HHhHHHHHHHHHHHHHh
Confidence 345566777666 69999999999998764
No 27
>PRK10049 pgaA outer membrane protein PgaA; Provisional
Probab=58.41 E-value=2.1e+02 Score=28.91 Aligned_cols=28 Identities=14% Similarity=0.077 Sum_probs=14.7
Q ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHhcc
Q 027558 15 NVYMAKLAEQAERYEEMVEFMEKVSASV 42 (222)
Q Consensus 15 li~~AklaeqaeRy~Dm~~~mk~~i~~~ 42 (222)
+..+|.+....|++++++..++++++..
T Consensus 119 ~~~la~~l~~~g~~~~Al~~l~~al~~~ 146 (765)
T PRK10049 119 LLALAYVYKRAGRHWDELRAMTQALPRA 146 (765)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHhC
Confidence 4445555555555555555555555443
No 28
>KOG4759 consensus Ribosome recycling factor [Translation, ribosomal structure and biogenesis]
Probab=57.94 E-value=41 Score=30.05 Aligned_cols=72 Identities=24% Similarity=0.262 Sum_probs=52.7
Q ss_pred CCCCCHHHHHHHHHHHhhhhchhhhHHHHHHhhhhhhhhcCChhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhcc
Q 027558 45 SEELTVEERNLLSVAYKNVIGARRASWRIISSIEQKEESRGNEDHVSTIRDYRSKIETELSSICDGILKLLDSRL 119 (222)
Q Consensus 45 ~~~Ls~eERnLls~ayKn~i~~~R~s~R~l~~ieqk~~~~~~~~~~~~i~~yk~kie~EL~~~C~eil~lId~~L 119 (222)
.|+.|.|-|.=|+...+......|.|+|-+..---+...+.... .-.+--.+++.||..+.++.+..+|..|
T Consensus 182 iP~~T~E~Re~laK~~~~~~ee~K~slr~ir~~~~kk~~k~~~~---~~~D~vkkae~~l~~l~k~~v~~ld~ll 253 (263)
T KOG4759|consen 182 IPPVTKESREKLAKVLKRYFEEYKQSLRKIRTKSIKKSKKNKKS---LSEDEVKKAEAELQKLAKDAVNKLDDLL 253 (263)
T ss_pred CCCcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccc---CChhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35689999999999999999999999998864333322221111 2245567888999999999888888766
No 29
>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A ....
Probab=57.93 E-value=35 Score=22.43 Aligned_cols=47 Identities=17% Similarity=0.189 Sum_probs=32.3
Q ss_pred HHHHHHHHHHHHHHHhcCCCCCcchhhhhHHHHHHHHHHhCChHHHHHHHHHhcCc
Q 027558 157 ESTLTAYKAAQDIANAELAPTHPIRLGLALNFSVFYYEILNSPDRACNLAKQVCKP 212 (222)
Q Consensus 157 ~~a~~aY~~A~~~a~~~L~pt~pirLgLaLN~SVF~yEi~~~~~~A~~iAk~Afd~ 212 (222)
+.|.+.|++++.. +|-...+.++++..|+. .|+.++|..+.++....
T Consensus 8 ~~A~~~~~~~l~~--------~p~~~~~~~~la~~~~~-~g~~~~A~~~l~~~~~~ 54 (68)
T PF14559_consen 8 DEAIELLEKALQR--------NPDNPEARLLLAQCYLK-QGQYDEAEELLERLLKQ 54 (68)
T ss_dssp HHHHHHHHHHHHH--------TTTSHHHHHHHHHHHHH-TT-HHHHHHHHHCCHGG
T ss_pred HHHHHHHHHHHHH--------CCCCHHHHHHHHHHHHH-cCCHHHHHHHHHHHHHH
Confidence 4567777777643 34455666677788888 59999999988765443
No 30
>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW. Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.
Probab=57.87 E-value=90 Score=24.43 Aligned_cols=57 Identities=14% Similarity=0.043 Sum_probs=37.2
Q ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHhccCCCCCCCHHHHHHHHHHHhhhhchhhhHHHHH
Q 027558 13 EENVYMAKLAEQAERYEEMVEFMEKVSASVESSEELTVEERNLLSVAYKNVIGARRASWRII 74 (222)
Q Consensus 13 ~~li~~AklaeqaeRy~Dm~~~mk~~i~~~~~~~~Ls~eERnLls~ayKn~i~~~R~s~R~l 74 (222)
.-...++......|+|+++++.+.+.++.. +. +..-...++..|-.. +....+...+
T Consensus 32 ~~~~~la~~~~~~~~~~~A~~~~~~~l~~~---p~-~~~~~~~la~~~~~~-~~~~~A~~~~ 88 (234)
T TIGR02521 32 KIRVQLALGYLEQGDLEVAKENLDKALEHD---PD-DYLAYLALALYYQQL-GELEKAEDSF 88 (234)
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHhC---cc-cHHHHHHHHHHHHHc-CCHHHHHHHH
Confidence 445677888889999999999999998765 33 344445555555433 3344444444
No 31
>smart00028 TPR Tetratricopeptide repeats. Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.
Probab=56.07 E-value=27 Score=17.80 Aligned_cols=28 Identities=18% Similarity=0.182 Sum_probs=23.5
Q ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHhcc
Q 027558 15 NVYMAKLAEQAERYEEMVEFMEKVSASV 42 (222)
Q Consensus 15 li~~AklaeqaeRy~Dm~~~mk~~i~~~ 42 (222)
+..++.+..+.++|++++.++.+.+...
T Consensus 4 ~~~~a~~~~~~~~~~~a~~~~~~~~~~~ 31 (34)
T smart00028 4 LYNLGNAYLKLGDYDEALEYYEKALELD 31 (34)
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHccC
Confidence 4567888889999999999999988654
No 32
>PF01765 RRF: Ribosome recycling factor; InterPro: IPR023584 The ribosome recycling factor or ribosome release factor (RRF) dissociates ribosomes from mRNA after termination of translation, and is essential for bacterial growth []. Thus ribosomes are 'recycled' and ready for another round of protein synthesis. This entry represents a domain found in ribosome recycling factors.; PDB: 3R8N_Y 1Y69_8 1ISE_A 1EK8_A 1DD5_A 1WIH_A 2Z4L_6 2QBE_6 2V46_Y 1EH1_A ....
Probab=55.90 E-value=45 Score=27.26 Aligned_cols=73 Identities=23% Similarity=0.211 Sum_probs=48.2
Q ss_pred CCCCHHHHHHHHHHHhhhhchhhhHHHHHHhhhhhhhhcCChhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhcc
Q 027558 46 EELTVEERNLLSVAYKNVIGARRASWRIISSIEQKEESRGNEDHVSTIRDYRSKIETELSSICDGILKLLDSRL 119 (222)
Q Consensus 46 ~~Ls~eERnLls~ayKn~i~~~R~s~R~l~~ieqk~~~~~~~~~~~~i~~yk~kie~EL~~~C~eil~lId~~L 119 (222)
|.+|.|-|.-+..-.|...-..|.+.|.+..--.+.-.+ .......-++-..+.+++|..+-++.+.-||..+
T Consensus 85 P~~T~E~R~~l~k~~k~~~E~~k~~iR~iR~~~~~~lkk-~~~~~~~s~D~~~~~~~~iq~l~~~~~~~id~~~ 157 (165)
T PF01765_consen 85 PPPTEERRKELVKQAKKIAEEAKVSIRNIRRDAMKKLKK-LKKSKEISEDDIKKLEKEIQKLTDKYIKKIDELL 157 (165)
T ss_dssp -SSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHTTSS-HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-hhccCCCCchhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 679999999999999999999999999986432222100 0000012345556677777777777777777544
No 33
>PF05010 TACC: Transforming acidic coiled-coil-containing protein (TACC); InterPro: IPR007707 This family contains the proteins TACC 1, 2 and 3, found concentrated in the centrosomes of eukaryotes which may play a conserved role in organising centrosomal microtubules. The human TACC proteins have been linked to cancer and TACC2 has been identified as a possible tumour suppressor (AZU-1) [].
Probab=54.81 E-value=1.3e+02 Score=25.97 Aligned_cols=84 Identities=23% Similarity=0.300 Sum_probs=48.7
Q ss_pred HHHHHHHHhCCHHHHHHHHHHHHhccCCCCCCCHHHHHHHHHHHhhhhchhhhHHHHHHhhhhhhhhcCChhhHHHHHHH
Q 027558 17 YMAKLAEQAERYEEMVEFMEKVSASVESSEELTVEERNLLSVAYKNVIGARRASWRIISSIEQKEESRGNEDHVSTIRDY 96 (222)
Q Consensus 17 ~~AklaeqaeRy~Dm~~~mk~~i~~~~~~~~Ls~eERnLls~ayKn~i~~~R~s~R~l~~ieqk~~~~~~~~~~~~i~~y 96 (222)
|++++-.+-.||+-+-.....-+ +..++|..-+-..++.-+...+..+|--..--+- . ... -.-
T Consensus 123 y~~~l~~~eqry~aLK~hAeekL-------~~ANeei~~v~~~~~~e~~aLqa~lkk~e~~~~S---L--e~~----LeQ 186 (207)
T PF05010_consen 123 YEERLKKEEQRYQALKAHAEEKL-------EKANEEIAQVRSKHQAELLALQASLKKEEMKVQS---L--EES----LEQ 186 (207)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHH---H--HHH----HHH
Confidence 56677777777766544443333 3346777777777777777777777765210000 0 000 011
Q ss_pred HHHHHHHHHHHHHHHHHHhh
Q 027558 97 RSKIETELSSICDGILKLLD 116 (222)
Q Consensus 97 k~kie~EL~~~C~eil~lId 116 (222)
+.+=..||..||+|+|.-++
T Consensus 187 K~kEn~ELtkICDeLI~k~~ 206 (207)
T PF05010_consen 187 KTKENEELTKICDELISKMG 206 (207)
T ss_pred HHHHHHHHHHHHHHHHHHhc
Confidence 22334899999999887553
No 34
>PRK11447 cellulose synthase subunit BcsC; Provisional
Probab=52.14 E-value=3.2e+02 Score=29.10 Aligned_cols=60 Identities=15% Similarity=0.105 Sum_probs=42.2
Q ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHhccCCCCCCCHHHHHHHHHHHhhhhchhhhHHHHHHhhh
Q 027558 14 ENVYMAKLAEQAERYEEMVEFMEKVSASVESSEELTVEERNLLSVAYKNVIGARRASWRIISSIE 78 (222)
Q Consensus 14 ~li~~AklaeqaeRy~Dm~~~mk~~i~~~~~~~~Ls~eERnLls~ayKn~i~~~R~s~R~l~~ie 78 (222)
-++.+|.+..+.|++++++.+++++++.. |+ +.+=+.-+..+|... +....+...+..+.
T Consensus 605 ~~~~La~~~~~~g~~~~A~~~y~~al~~~---P~-~~~a~~~la~~~~~~-g~~~eA~~~l~~ll 664 (1157)
T PRK11447 605 IDLTLADWAQQRGDYAAARAAYQRVLTRE---PG-NADARLGLIEVDIAQ-GDLAAARAQLAKLP 664 (1157)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhC---CC-CHHHHHHHHHHHHHC-CCHHHHHHHHHHHh
Confidence 34678888899999999999999999876 55 445555555566544 66666666665443
No 35
>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B.
Probab=51.87 E-value=31 Score=22.60 Aligned_cols=32 Identities=19% Similarity=0.291 Sum_probs=26.7
Q ss_pred ChHHHHHHHHHHHHhCCHHHHHHHHHHHHhcc
Q 027558 11 PREENVYMAKLAEQAERYEEMVEFMEKVSASV 42 (222)
Q Consensus 11 ~r~~li~~AklaeqaeRy~Dm~~~mk~~i~~~ 42 (222)
..+=+..++.+..+.|+|++++..+.++++..
T Consensus 30 ~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~~ 61 (65)
T PF13432_consen 30 NPEAWYLLGRILYQQGRYDEALAYYERALELD 61 (65)
T ss_dssp HHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHS
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC
Confidence 34566789999999999999999999998775
No 36
>PF13371 TPR_9: Tetratricopeptide repeat
Probab=51.01 E-value=32 Score=22.97 Aligned_cols=46 Identities=17% Similarity=0.193 Sum_probs=32.5
Q ss_pred HHHHHHHHHHHHHHHhcCCCCCcchhhhhHHHHHHHHHHhCChHHHHHHHHHhcC
Q 027558 157 ESTLTAYKAAQDIANAELAPTHPIRLGLALNFSVFYYEILNSPDRACNLAKQVCK 211 (222)
Q Consensus 157 ~~a~~aY~~A~~~a~~~L~pt~pirLgLaLN~SVF~yEi~~~~~~A~~iAk~Afd 211 (222)
+.|.++++.++.+ +|--..+-++.+.+++. +|+.++|.....++.+
T Consensus 12 ~~A~~~~~~~l~~--------~p~~~~~~~~~a~~~~~-~g~~~~A~~~l~~~l~ 57 (73)
T PF13371_consen 12 EEALEVLERALEL--------DPDDPELWLQRARCLFQ-LGRYEEALEDLERALE 57 (73)
T ss_pred HHHHHHHHHHHHh--------CcccchhhHHHHHHHHH-hccHHHHHHHHHHHHH
Confidence 3445555555432 45566777888888887 6999999998888764
No 37
>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional
Probab=50.49 E-value=3.4e+02 Score=28.83 Aligned_cols=26 Identities=27% Similarity=0.227 Sum_probs=16.7
Q ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHh
Q 027558 15 NVYMAKLAEQAERYEEMVEFMEKVSA 40 (222)
Q Consensus 15 li~~AklaeqaeRy~Dm~~~mk~~i~ 40 (222)
.+.+|.+..+.|+|++++...+++..
T Consensus 512 ~L~lA~al~~~Gr~eeAi~~~rka~~ 537 (987)
T PRK09782 512 HRAVAYQAYQVEDYATALAAWQKISL 537 (987)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHhc
Confidence 44556666667777777777766543
No 38
>COG0233 Frr Ribosome recycling factor [Translation, ribosomal structure and biogenesis]
Probab=50.42 E-value=61 Score=27.60 Aligned_cols=73 Identities=23% Similarity=0.207 Sum_probs=49.4
Q ss_pred CCCCHHHHHHHHHHHhhhhchhhhHHHHHHhhhhhhhhcCChhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhcc
Q 027558 46 EELTVEERNLLSVAYKNVIGARRASWRIISSIEQKEESRGNEDHVSTIRDYRSKIETELSSICDGILKLLDSRL 119 (222)
Q Consensus 46 ~~Ls~eERnLls~ayKn~i~~~R~s~R~l~~ieqk~~~~~~~~~~~~i~~yk~kie~EL~~~C~eil~lId~~L 119 (222)
|+||.|-|.=|..-.|...-.-|-|.|-+.---... -+.....-..-++-..+.++++..+.++.+.-||..+
T Consensus 105 P~lTeErRkelvK~~k~~~EeakvaiRniRrda~d~-iKK~~K~~~isEDe~k~~e~~iQKlTd~yi~~iD~~~ 177 (187)
T COG0233 105 PPLTEERRKELVKVAKKYAEEAKVAVRNIRRDANDK-IKKLEKDKEISEDEVKKAEEEIQKLTDEYIKKIDELL 177 (187)
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHhccCCcchHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 789999999999999999998899998884211110 0101111112355667778888888888888888755
No 39
>CHL00033 ycf3 photosystem I assembly protein Ycf3
Probab=48.75 E-value=56 Score=25.88 Aligned_cols=69 Identities=14% Similarity=0.057 Sum_probs=44.5
Q ss_pred chHHHHHHhhhccccchhhhccchhHHHHHHHHHHHHHHHHHHHHhcCCCCCcchhhhhHHHHHHHHHHhCChHHHHHHH
Q 027558 127 DSKVFYLKMKGDYHRYLAEFKTGAERKEAAESTLTAYKAAQDIANAELAPTHPIRLGLALNFSVFYYEILNSPDRACNLA 206 (222)
Q Consensus 127 eskvfy~KmkgDyyRYlaE~~~~~~~~~~~~~a~~aY~~A~~~a~~~L~pt~pirLgLaLN~SVF~yEi~~~~~~A~~iA 206 (222)
+....++-..|-.+.-... .+.|...|++|+.+. |.++.......|.++.+.. .|+.++|+...
T Consensus 32 ~~~a~~~~~~g~~~~~~g~----------~~~A~~~~~~al~l~-----~~~~~~~~~~~~lg~~~~~-~g~~~eA~~~~ 95 (168)
T CHL00033 32 EKEAFTYYRDGMSAQSEGE----------YAEALQNYYEAMRLE-----IDPYDRSYILYNIGLIHTS-NGEHTKALEYY 95 (168)
T ss_pred hHHHHHHHHHHHHHHHcCC----------HHHHHHHHHHHHhcc-----ccchhhHHHHHHHHHHHHH-cCCHHHHHHHH
Confidence 3455555555655443321 356888888888763 2333333456777776665 79999999999
Q ss_pred HHhcC
Q 027558 207 KQVCK 211 (222)
Q Consensus 207 k~Afd 211 (222)
++|..
T Consensus 96 ~~Al~ 100 (168)
T CHL00033 96 FQALE 100 (168)
T ss_pred HHHHH
Confidence 88874
No 40
>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A ....
Probab=48.10 E-value=77 Score=20.78 Aligned_cols=46 Identities=26% Similarity=0.309 Sum_probs=33.4
Q ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHhccCCCCCCCHHHHHHHHHHHhh
Q 027558 13 EENVYMAKLAEQAERYEEMVEFMEKVSASVESSEELTVEERNLLSVAYKN 62 (222)
Q Consensus 13 ~~li~~AklaeqaeRy~Dm~~~mk~~i~~~~~~~~Ls~eERnLls~ayKn 62 (222)
+.+..++.++.+.|+|++++.++++.++.+ +. +.+=..-++.+|..
T Consensus 4 ~~~~~~g~~~~~~~~~~~A~~~~~~ai~~~---p~-~~~~~~~~g~~~~~ 49 (69)
T PF13414_consen 4 EAWYNLGQIYFQQGDYEEAIEYFEKAIELD---PN-NAEAYYNLGLAYMK 49 (69)
T ss_dssp HHHHHHHHHHHHTTHHHHHHHHHHHHHHHS---TT-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHcC---CC-CHHHHHHHHHHHHH
Confidence 346678999999999999999999999886 44 33334444444433
No 41
>cd00520 RRF Ribosome recycling factor (RRF). Ribosome recycling factor dissociates the posttermination complex, composed of the ribosome, deacylated tRNA, and mRNA, after termination of translation. Thus ribosomes are "recycled" and ready for another round of protein synthesis. RRF is believed to bind the ribosome at the A-site in a manner that mimics tRNA, but the specific mechanisms remain unclear. RRF is essential for bacterial growth. It is not necessary for cell growth in archaea or eukaryotes, but is found in mitochondria or chloroplasts of some eukaryotic species.
Probab=45.89 E-value=61 Score=27.04 Aligned_cols=73 Identities=23% Similarity=0.226 Sum_probs=45.0
Q ss_pred CCCCHHHHHHHHHHHhhhhchhhhHHHHHHhhhhhhhhcCChhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhcc
Q 027558 46 EELTVEERNLLSVAYKNVIGARRASWRIISSIEQKEESRGNEDHVSTIRDYRSKIETELSSICDGILKLLDSRL 119 (222)
Q Consensus 46 ~~Ls~eERnLls~ayKn~i~~~R~s~R~l~~ieqk~~~~~~~~~~~~i~~yk~kie~EL~~~C~eil~lId~~L 119 (222)
|++|.|-|.=|....|...-..|.+.|.+..--.+.- +.....-..-++-.++.++|+..+.++.+.-||..+
T Consensus 99 P~lT~E~R~~lvK~~k~~~E~~Kv~iRniR~~~~~~l-Kk~~k~~~iseD~~k~~~~~iqkltd~~i~~id~~~ 171 (179)
T cd00520 99 PPLTEERRKELVKDAKKIAEEAKVAIRNIRRDANDKI-KKLEKEKEISEDEVKKAEEDLQKLTDEYIKKIDELL 171 (179)
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHhhccCCCCchHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 7899999999998889998888888888743111110 000000001134445666777777777776666544
No 42
>PF10083 DUF2321: Uncharacterized protein conserved in bacteria (DUF2321); InterPro: IPR016891 This entry is represented by Bacteriophage 'Lactobacillus prophage Lj928', Orf-Ljo1454. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=45.59 E-value=1.4e+02 Score=24.69 Aligned_cols=33 Identities=15% Similarity=0.246 Sum_probs=27.2
Q ss_pred HHHHHHHHHHhccCCCCCCCHHHHHHHHHHHhhhhc
Q 027558 30 EMVEFMEKVSASVESSEELTVEERNLLSVAYKNVIG 65 (222)
Q Consensus 30 Dm~~~mk~~i~~~~~~~~Ls~eERnLls~ayKn~i~ 65 (222)
..++..+++++.. .+||.+|++.|..+...++-
T Consensus 83 ~~L~aa~el~ee~---eeLs~deke~~~~sl~dL~~ 115 (158)
T PF10083_consen 83 NALEAANELIEED---EELSPDEKEQFKESLPDLTK 115 (158)
T ss_pred HHHHHHHHHHHHh---hcCCHHHHHHHHhhhHHHhh
Confidence 4567777888765 89999999999999988774
No 43
>TIGR00496 frr ribosome recycling factor. This model finds only eubacterial proteins. Mitochondrial and/or chloroplast forms might be expected but are not currently known. This protein was previously called ribosome releasing factor. By releasing ribosomes from mRNA at the end of protein biosynthesis, it prevents inappropriate translation from 3-prime regions of the mRNA and frees the ribosome for new rounds of translation. EGAD|53116|YHR038W is part of the frr superfamily.
Probab=44.86 E-value=72 Score=26.64 Aligned_cols=73 Identities=19% Similarity=0.231 Sum_probs=45.4
Q ss_pred CCCCHHHHHHHHHHHhhhhchhhhHHHHHHhhhhhhhhcCChhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhcc
Q 027558 46 EELTVEERNLLSVAYKNVIGARRASWRIISSIEQKEESRGNEDHVSTIRDYRSKIETELSSICDGILKLLDSRL 119 (222)
Q Consensus 46 ~~Ls~eERnLls~ayKn~i~~~R~s~R~l~~ieqk~~~~~~~~~~~~i~~yk~kie~EL~~~C~eil~lId~~L 119 (222)
|+||.|-|.=|....|...-..|.++|-+..--.+.- +.....-..-++-..++++++..+.++.+.-||..+
T Consensus 94 P~lT~E~RkelvK~~k~~~E~aKv~iRniRr~~~~~i-Kk~~k~~~iseD~~k~~~~~iQkltd~~i~~id~~~ 166 (176)
T TIGR00496 94 PPLTEERRKELVKHAKKIAEQAKVAVRNVRRDANDKV-KKLEKDKEISEDEERRLQEEIQKLTDEYIKKIDEIL 166 (176)
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHhhcCCCChhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 7899999999999999998888899888843111100 000000001144555667777777777777666554
No 44
>PRK11447 cellulose synthase subunit BcsC; Provisional
Probab=44.81 E-value=4.1e+02 Score=28.26 Aligned_cols=29 Identities=21% Similarity=0.248 Sum_probs=25.6
Q ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHhcc
Q 027558 14 ENVYMAKLAEQAERYEEMVEFMEKVSASV 42 (222)
Q Consensus 14 ~li~~AklaeqaeRy~Dm~~~mk~~i~~~ 42 (222)
..+.+|++.-..|+|++++..++++++.+
T Consensus 114 ~~l~~A~ll~~~g~~~eA~~~~~~~l~~~ 142 (1157)
T PRK11447 114 QALQQARLLATTGRTEEALASYDKLFNGA 142 (1157)
T ss_pred hHHHHHHHHHhCCCHHHHHHHHHHHccCC
Confidence 45888999999999999999999998765
No 45
>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A.
Probab=43.72 E-value=34 Score=23.85 Aligned_cols=44 Identities=11% Similarity=0.175 Sum_probs=26.6
Q ss_pred HHHHHHHHHhcCCCCCcchhhhhHHHHHHHHHHhCChHHHHHHHHHh
Q 027558 163 YKAAQDIANAELAPTHPIRLGLALNFSVFYYEILNSPDRACNLAKQV 209 (222)
Q Consensus 163 Y~~A~~~a~~~L~pt~pirLgLaLN~SVF~yEi~~~~~~A~~iAk~A 209 (222)
|++|+++.+. .+.+|..+....-++--+++ +|+.++|+..-++|
T Consensus 41 y~~A~~~~~~--~~~~~~~~~~~~l~a~~~~~-l~~y~eAi~~l~~~ 84 (84)
T PF12895_consen 41 YEEAIELLQK--LKLDPSNPDIHYLLARCLLK-LGKYEEAIKALEKA 84 (84)
T ss_dssp HHHHHHHHHC--HTHHHCHHHHHHHHHHHHHH-TT-HHHHHHHHHHH
T ss_pred HHHHHHHHHH--hCCCCCCHHHHHHHHHHHHH-hCCHHHHHHHHhcC
Confidence 5666666643 33444445555555555665 79999999876654
No 46
>PRK00083 frr ribosome recycling factor; Reviewed
Probab=43.69 E-value=77 Score=26.67 Aligned_cols=73 Identities=22% Similarity=0.208 Sum_probs=45.4
Q ss_pred CCCCHHHHHHHHHHHhhhhchhhhHHHHHHhhhhhhhhcCChhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhcc
Q 027558 46 EELTVEERNLLSVAYKNVIGARRASWRIISSIEQKEESRGNEDHVSTIRDYRSKIETELSSICDGILKLLDSRL 119 (222)
Q Consensus 46 ~~Ls~eERnLls~ayKn~i~~~R~s~R~l~~ieqk~~~~~~~~~~~~i~~yk~kie~EL~~~C~eil~lId~~L 119 (222)
|+||.|-|.=|....|...-.-|.+.|.+..--.+.-.+ ....-..-++-..+.++|+..+.++.+.-||..+
T Consensus 103 P~lT~E~R~elvK~~k~~~E~aKv~iRniRr~~~~~iKk-~~k~~~iseD~~k~~e~eiQkltd~~i~~id~~~ 175 (185)
T PRK00083 103 PPLTEERRKELVKQVKKEAEEAKVAIRNIRRDANDKLKK-LEKDKEISEDELKRAEDEIQKLTDKYIKKIDELL 175 (185)
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HhhcCCCChHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 789999999999999999888889988885321111000 0000001144455666777777777777666544
No 47
>PRK02603 photosystem I assembly protein Ycf3; Provisional
Probab=40.18 E-value=91 Score=24.85 Aligned_cols=50 Identities=18% Similarity=0.221 Sum_probs=35.1
Q ss_pred HHHHHHHHHHHHHHHhcCCCCCcchhhhhHHHHHHHHHHhCChHHHHHHHHHhcCc
Q 027558 157 ESTLTAYKAAQDIANAELAPTHPIRLGLALNFSVFYYEILNSPDRACNLAKQVCKP 212 (222)
Q Consensus 157 ~~a~~aY~~A~~~a~~~L~pt~pirLgLaLN~SVF~yEi~~~~~~A~~iAk~Afd~ 212 (222)
+.|...|++|+++.. .+|-..-...|.++-++. +|+.++|+...++|++.
T Consensus 52 ~~A~~~~~~al~~~~-----~~~~~~~~~~~la~~~~~-~g~~~~A~~~~~~al~~ 101 (172)
T PRK02603 52 AEALENYEEALKLEE-----DPNDRSYILYNMGIIYAS-NGEHDKALEYYHQALEL 101 (172)
T ss_pred HHHHHHHHHHHHHhh-----ccchHHHHHHHHHHHHHH-cCCHHHHHHHHHHHHHh
Confidence 467888888887642 222233456777777776 79999999988888763
No 48
>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A ....
Probab=40.04 E-value=54 Score=21.45 Aligned_cols=53 Identities=21% Similarity=0.375 Sum_probs=27.5
Q ss_pred HhCCHHHHHHHHHHHHhccCCCCCCCHHHHHHHHHHHhhhhchhhhHHHHHHhhhhhh
Q 027558 24 QAERYEEMVEFMEKVSASVESSEELTVEERNLLSVAYKNVIGARRASWRIISSIEQKE 81 (222)
Q Consensus 24 qaeRy~Dm~~~mk~~i~~~~~~~~Ls~eERnLls~ayKn~i~~~R~s~R~l~~ieqk~ 81 (222)
+.|+|++++..+++++..+ |+ +.+=+-.+..+|-.. |..-.|-+++..+....
T Consensus 3 ~~~~~~~A~~~~~~~l~~~---p~-~~~~~~~la~~~~~~-g~~~~A~~~l~~~~~~~ 55 (68)
T PF14559_consen 3 KQGDYDEAIELLEKALQRN---PD-NPEARLLLAQCYLKQ-GQYDEAEELLERLLKQD 55 (68)
T ss_dssp HTTHHHHHHHHHHHHHHHT---TT-SHHHHHHHHHHHHHT-T-HHHHHHHHHCCHGGG
T ss_pred hccCHHHHHHHHHHHHHHC---CC-CHHHHHHHHHHHHHc-CCHHHHHHHHHHHHHHC
Confidence 3456666666666666554 33 445455555555433 55555555555544444
No 49
>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala. N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], [].
Probab=38.11 E-value=3.9e+02 Score=26.09 Aligned_cols=63 Identities=17% Similarity=0.241 Sum_probs=44.4
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHhcCCC------CCcchhhhhHHHHHHHHHHhCChHHHHHHHHHhcCcc
Q 027558 150 AERKEAAESTLTAYKAAQDIANAELAP------THPIRLGLALNFSVFYYEILNSPDRACNLAKQVCKPE 213 (222)
Q Consensus 150 ~~~~~~~~~a~~aY~~A~~~a~~~L~p------t~pirLgLaLN~SVF~yEi~~~~~~A~~iAk~Afd~A 213 (222)
.++..+++.-...|...++... .+++ ..|.-+--++.|---+|+.+|+.++|.+...+|++--
T Consensus 156 ~~K~~~i~~l~~~~~~~l~~~~-~~~~~~~~~~~~p~~~lw~~~~lAqhyd~~g~~~~Al~~Id~aI~ht 224 (517)
T PF12569_consen 156 PEKAAIIESLVEEYVNSLESNG-SFSNGDDEEKEPPSTLLWTLYFLAQHYDYLGDYEKALEYIDKAIEHT 224 (517)
T ss_pred hhHHHHHHHHHHHHHHhhcccC-CCCCccccccCCchHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcC
Confidence 3556667777677766554432 2332 3466666677777778989999999999999988764
No 50
>PRK10747 putative protoheme IX biogenesis protein; Provisional
Probab=37.46 E-value=3.3e+02 Score=25.02 Aligned_cols=54 Identities=19% Similarity=0.098 Sum_probs=37.2
Q ss_pred HHHHHHHHHHHHHHHHhcCCCCCcchhhhhHHHHHHHHHHhCChHHHHHHHHHhcCccccccCC
Q 027558 156 AESTLTAYKAAQDIANAELAPTHPIRLGLALNFSVFYYEILNSPDRACNLAKQVCKPEPKLIVP 219 (222)
Q Consensus 156 ~~~a~~aY~~A~~~a~~~L~pt~pirLgLaLN~SVF~yEi~~~~~~A~~iAk~Afd~Ai~~~~~ 219 (222)
-.+|.+.++.+++ +.|+++..+-|+. .++-.|++++|+++-+++..-+.+.+.|
T Consensus 344 ~~~A~~~le~al~-----~~P~~~~~~~La~-----~~~~~g~~~~A~~~~~~~l~~~~~~~~~ 397 (398)
T PRK10747 344 WQEASLAFRAALK-----QRPDAYDYAWLAD-----ALDRLHKPEEAAAMRRDGLMLTLQNNPP 397 (398)
T ss_pred HHHHHHHHHHHHh-----cCCCHHHHHHHHH-----HHHHcCCHHHHHHHHHHHHhhhcccCCC
Confidence 3456777776664 4677776433322 3456899999999999998877666665
No 51
>PF13371 TPR_9: Tetratricopeptide repeat
Probab=36.09 E-value=68 Score=21.26 Aligned_cols=30 Identities=30% Similarity=0.210 Sum_probs=24.3
Q ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHhcc
Q 027558 13 EENVYMAKLAEQAERYEEMVEFMEKVSASV 42 (222)
Q Consensus 13 ~~li~~AklaeqaeRy~Dm~~~mk~~i~~~ 42 (222)
.-...+|.+..+.|+|+++++.+.++++..
T Consensus 30 ~~~~~~a~~~~~~g~~~~A~~~l~~~l~~~ 59 (73)
T PF13371_consen 30 ELWLQRARCLFQLGRYEEALEDLERALELS 59 (73)
T ss_pred hhhHHHHHHHHHhccHHHHHHHHHHHHHHC
Confidence 345678888888899999999998888765
No 52
>PRK11788 tetratricopeptide repeat protein; Provisional
Probab=33.87 E-value=3.3e+02 Score=24.02 Aligned_cols=26 Identities=8% Similarity=-0.003 Sum_probs=15.3
Q ss_pred HHHHHHHHHhCCHHHHHHHHHHHHhc
Q 027558 16 VYMAKLAEQAERYEEMVEFMEKVSAS 41 (222)
Q Consensus 16 i~~AklaeqaeRy~Dm~~~mk~~i~~ 41 (222)
..++.+..+.|+|+++..+++++.+.
T Consensus 111 ~~La~~~~~~g~~~~A~~~~~~~l~~ 136 (389)
T PRK11788 111 QELGQDYLKAGLLDRAEELFLQLVDE 136 (389)
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHcC
Confidence 34455555666666666666665543
No 53
>cd02656 MIT MIT: domain contained within Microtubule Interacting and Trafficking molecules. The MIT domain is found in sorting nexins, the nuclear thiol protease PalBH, the AAA protein spastin and archaebacterial proteins with similar domain architecture, vacuolar sorting proteins and others. The molecular function of the MIT domain is unclear.
Probab=33.45 E-value=1.6e+02 Score=20.31 Aligned_cols=28 Identities=21% Similarity=0.269 Sum_probs=22.4
Q ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHhc
Q 027558 14 ENVYMAKLAEQAERYEEMVEFMEKVSAS 41 (222)
Q Consensus 14 ~li~~AklaeqaeRy~Dm~~~mk~~i~~ 41 (222)
+++-.|--.++.|+|++++.+..+.++.
T Consensus 8 ~l~~~Av~~D~~g~~~~Al~~Y~~a~e~ 35 (75)
T cd02656 8 ELIKQAVKEDEDGNYEEALELYKEALDY 35 (75)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 4566677778899999999999888753
No 54
>PF08899 DUF1844: Domain of unknown function (DUF1844); InterPro: IPR014995 This group of proteins are functionally uncharacterised.
Probab=33.30 E-value=1.7e+02 Score=21.16 Aligned_cols=37 Identities=22% Similarity=0.301 Sum_probs=25.1
Q ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHhccCCCCCCCHHHHHHHHHHHh
Q 027558 14 ENVYMAKLAEQAERYEEMVEFMEKVSASVESSEELTVEERNLLSVAYK 61 (222)
Q Consensus 14 ~li~~AklaeqaeRy~Dm~~~mk~~i~~~~~~~~Ls~eERnLls~ayK 61 (222)
.-+-+||- .=|++..++. .+. +.||.+|..+|..+.-
T Consensus 32 ~dl~~Ak~------tID~L~mL~e--KTk---GNL~~~E~~lL~~~L~ 68 (74)
T PF08899_consen 32 VDLELAKQ------TIDLLAMLQE--KTK---GNLDEEEERLLESALY 68 (74)
T ss_pred CCHHHHHH------HHHHHHHHHH--HHc---cCCCHHHHHHHHHHHH
Confidence 33555553 3477777665 345 8999999999986643
No 55
>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF. Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.
Probab=33.20 E-value=1.8e+02 Score=20.58 Aligned_cols=26 Identities=15% Similarity=0.165 Sum_probs=12.3
Q ss_pred HHHHHHHHHhCCHHHHHHHHHHHHhc
Q 027558 16 VYMAKLAEQAERYEEMVEFMEKVSAS 41 (222)
Q Consensus 16 i~~AklaeqaeRy~Dm~~~mk~~i~~ 41 (222)
...+....+.|+|+++++.+.+++..
T Consensus 6 ~~~~~~~~~~~~~~~A~~~~~~~~~~ 31 (119)
T TIGR02795 6 YDAALLVLKAGDYADAIQAFQAFLKK 31 (119)
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 33444444445555555555555443
No 56
>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF. Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.
Probab=32.53 E-value=1.8e+02 Score=20.51 Aligned_cols=48 Identities=6% Similarity=0.100 Sum_probs=30.2
Q ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHhccCCCCCCCHHHHHHHHHHHh
Q 027558 13 EENVYMAKLAEQAERYEEMVEFMEKVSASVESSEELTVEERNLLSVAYK 61 (222)
Q Consensus 13 ~~li~~AklaeqaeRy~Dm~~~mk~~i~~~~~~~~Ls~eERnLls~ayK 61 (222)
+-...++.+..+.|+|++++..++.++... ++.....+=...+..+|.
T Consensus 40 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~~~~~~~~~~~ 87 (119)
T TIGR02795 40 NAHYWLGEAYYAQGKYADAAKAFLAVVKKY-PKSPKAPDALLKLGMSLQ 87 (119)
T ss_pred HHHHHHHHHHHhhccHHHHHHHHHHHHHHC-CCCCcccHHHHHHHHHHH
Confidence 345667888888888888888888887654 112233444555555554
No 57
>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A.
Probab=31.84 E-value=86 Score=21.73 Aligned_cols=22 Identities=27% Similarity=0.446 Sum_probs=12.6
Q ss_pred HHHHHHHHHhCCHHHHHHHHHH
Q 027558 16 VYMAKLAEQAERYEEMVEFMEK 37 (222)
Q Consensus 16 i~~AklaeqaeRy~Dm~~~mk~ 37 (222)
..+|+...+.|+|+++++++.+
T Consensus 62 ~l~a~~~~~l~~y~eAi~~l~~ 83 (84)
T PF12895_consen 62 YLLARCLLKLGKYEEAIKALEK 83 (84)
T ss_dssp HHHHHHHHHTT-HHHHHHHHHH
T ss_pred HHHHHHHHHhCCHHHHHHHHhc
Confidence 3446666666666666666543
No 58
>TIGR03504 FimV_Cterm FimV C-terminal domain. This protein is found at the extreme C-terminus of FimV from Pseudomonas aeruginosa, and of TspA of Neisseria meningitidis. Disruption of the former blocks twitching motility from type IV pili; Semmler, et al. suggest a role in peptidoglycan layer remodelling required by type IV fimbrial systems.
Probab=30.70 E-value=96 Score=19.95 Aligned_cols=40 Identities=25% Similarity=0.255 Sum_probs=30.8
Q ss_pred HHHHHHHHHhCCHHHHHHHHHHHHhccCCCCCCCHHHHHHHH
Q 027558 16 VYMAKLAEQAERYEEMVEFMEKVSASVESSEELTVEERNLLS 57 (222)
Q Consensus 16 i~~AklaeqaeRy~Dm~~~mk~~i~~~~~~~~Ls~eERnLls 57 (222)
+.+|+..-..|.++.+-+.+.+++..+ +++...+-+.||.
T Consensus 3 LdLA~ayie~Gd~e~Ar~lL~evl~~~--~~~q~~eA~~LL~ 42 (44)
T TIGR03504 3 LDLARAYIEMGDLEGARELLEEVIEEG--DEAQRQEARALLA 42 (44)
T ss_pred hHHHHHHHHcCChHHHHHHHHHHHHcC--CHHHHHHHHHHHh
Confidence 568999999999999999999999654 2445555666654
No 59
>PF03755 YicC_N: YicC-like family, N-terminal region ; InterPro: IPR013527 Proteins in this entry are homologues of YicC (P23839 from SWISSPROT) from Escherichia coli. Although it is relatively poorly characterised YicC has been shown to be important for cells in the stationary phase, and essential for growth at high temperatures []. This domain is found at the N-terminal region of these proteins.
Probab=30.40 E-value=45 Score=27.07 Aligned_cols=60 Identities=18% Similarity=0.118 Sum_probs=40.3
Q ss_pred HHHHHHHHHHHHHHhcCCCCCcchhhhhHHH-HHHH-HHHh--CChHHHHHHHHHhcCcccccc
Q 027558 158 STLTAYKAAQDIANAELAPTHPIRLGLALNF-SVFY-YEIL--NSPDRACNLAKQVCKPEPKLI 217 (222)
Q Consensus 158 ~a~~aY~~A~~~a~~~L~pt~pirLgLaLN~-SVF~-yEi~--~~~~~A~~iAk~Afd~Ai~~~ 217 (222)
....+|-+++.-....++...|+.++..|.+ .||. .+-. ...+..-.....++++|+..|
T Consensus 82 ~l~~~y~~~l~~l~~~~~~~~~~~~~~ll~~p~v~~~~~~~~~~~~e~~~~~l~~~l~~AL~~l 145 (159)
T PF03755_consen 82 ELAKAYYEALKELAEELGLAGPISLDDLLRLPGVLKVEEEEDEEEEEELWEALLEALEEALDEL 145 (159)
T ss_pred HHHHHHHHHHHHHHHHcCCCCCCCHHHHHcCCCcccccCCCCcchHHHHHHHHHHHHHHHHHHH
Confidence 3456666666666667888889999999999 5666 3311 122234466788888887765
No 60
>KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning]
Probab=30.33 E-value=63 Score=32.43 Aligned_cols=68 Identities=13% Similarity=0.075 Sum_probs=40.0
Q ss_pred hhhccccchhhhccchhHHHHHHHHHHHHHHHHHHHHhcCCCCCcchhhhhHHHHHHHHHHhCChHHHHHHHHHhcC
Q 027558 135 MKGDYHRYLAEFKTGAERKEAAESTLTAYKAAQDIANAELAPTHPIRLGLALNFSVFYYEILNSPDRACNLAKQVCK 211 (222)
Q Consensus 135 mkgDyyRYlaE~~~~~~~~~~~~~a~~aY~~A~~~a~~~L~pt~pirLgLaLN~SVF~yEi~~~~~~A~~iAk~Afd 211 (222)
+-++.||-+.....---|++--+.|+-.|++|++ +||.-.-+.--.+.++.. +|..++|+++-++|+-
T Consensus 484 ~~~rhYnAwYGlG~vy~Kqek~e~Ae~~fqkA~~--------INP~nsvi~~~~g~~~~~-~k~~d~AL~~~~~A~~ 551 (638)
T KOG1126|consen 484 VDPRHYNAWYGLGTVYLKQEKLEFAEFHFQKAVE--------INPSNSVILCHIGRIQHQ-LKRKDKALQLYEKAIH 551 (638)
T ss_pred CCchhhHHHHhhhhheeccchhhHHHHHHHhhhc--------CCccchhHHhhhhHHHHH-hhhhhHHHHHHHHHHh
Confidence 4444444443333222333334455555555543 456556666666777776 7999999999888863
No 61
>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional
Probab=29.31 E-value=1.3e+02 Score=27.42 Aligned_cols=46 Identities=17% Similarity=0.141 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHhcCCCCCcchhhhhHHHHHHHHHHhCChHHHHHHHHHhcC
Q 027558 157 ESTLTAYKAAQDIANAELAPTHPIRLGLALNFSVFYYEILNSPDRACNLAKQVCK 211 (222)
Q Consensus 157 ~~a~~aY~~A~~~a~~~L~pt~pirLgLaLN~SVF~yEi~~~~~~A~~iAk~Afd 211 (222)
+.|.+.|++|+.+ +|-...+.+|.+..|.. +|+.++|+..+.+|++
T Consensus 19 ~~Ai~~~~~Al~~--------~P~~~~a~~~~a~~~~~-~g~~~eAl~~~~~Al~ 64 (356)
T PLN03088 19 ALAVDLYTQAIDL--------DPNNAELYADRAQANIK-LGNFTEAVADANKAIE 64 (356)
T ss_pred HHHHHHHHHHHHh--------CCCCHHHHHHHHHHHHH-cCCHHHHHHHHHHHHH
No 62
>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=29.24 E-value=89 Score=27.75 Aligned_cols=48 Identities=15% Similarity=0.218 Sum_probs=35.7
Q ss_pred HHHHHHHHHHHHHHHHhcCCCCCcchhhhhHHHHHHHHHHhCChHHHHHHHHHhcCc
Q 027558 156 AESTLTAYKAAQDIANAELAPTHPIRLGLALNFSVFYYEILNSPDRACNLAKQVCKP 212 (222)
Q Consensus 156 ~~~a~~aY~~A~~~a~~~L~pt~pirLgLaLN~SVF~yEi~~~~~~A~~iAk~Afd~ 212 (222)
.+.|.+.|++|+.++- - .=-+--||.-|++.- |.+++|.+.-.+|..+
T Consensus 85 ~~~A~e~YrkAlsl~p-----~---~GdVLNNYG~FLC~q-g~~~eA~q~F~~Al~~ 132 (250)
T COG3063 85 NDLADESYRKALSLAP-----N---NGDVLNNYGAFLCAQ-GRPEEAMQQFERALAD 132 (250)
T ss_pred hhhHHHHHHHHHhcCC-----C---ccchhhhhhHHHHhC-CChHHHHHHHHHHHhC
Confidence 4678999999986542 2 223456899999995 7999999887776543
No 63
>KOG1679 consensus Enoyl-CoA hydratase [Lipid transport and metabolism]
Probab=28.56 E-value=64 Score=28.53 Aligned_cols=20 Identities=35% Similarity=0.605 Sum_probs=16.0
Q ss_pred HHHHHHHHHHHHhcCCCCCcc
Q 027558 160 LTAYKAAQDIANAELAPTHPI 180 (222)
Q Consensus 160 ~~aY~~A~~~a~~~L~pt~pi 180 (222)
-.+|++|+++|++ +-|.-|+
T Consensus 217 daa~~kal~lA~e-ilp~gPi 236 (291)
T KOG1679|consen 217 DAAYQKALELARE-ILPQGPI 236 (291)
T ss_pred cHHHHHHHHHHHH-hccCCch
Confidence 3799999999984 6667775
No 64
>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals. A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.
Probab=28.40 E-value=4e+02 Score=23.21 Aligned_cols=33 Identities=18% Similarity=0.108 Sum_probs=27.9
Q ss_pred CChHHHHHHHHHHHHhCCHHHHHHHHHHHHhcc
Q 027558 10 SPREENVYMAKLAEQAERYEEMVEFMEKVSASV 42 (222)
Q Consensus 10 ~~r~~li~~AklaeqaeRy~Dm~~~mk~~i~~~ 42 (222)
+.++.....|-++-+.|+++++...+.++++..
T Consensus 41 ~~~e~~~~~a~~~~~~g~~~~A~~~~~~~l~~~ 73 (355)
T cd05804 41 TERERAHVEALSAWIAGDLPKALALLEQLLDDY 73 (355)
T ss_pred CHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC
Confidence 457778888888899999999999999988765
No 65
>cd02682 MIT_AAA_Arch MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in mostly archaebacterial AAA-ATPases. The molecular function of the MIT domain is unclear.
Probab=27.59 E-value=1.1e+02 Score=22.00 Aligned_cols=27 Identities=19% Similarity=0.106 Sum_probs=21.5
Q ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHh
Q 027558 14 ENVYMAKLAEQAERYEEMVEFMEKVSA 40 (222)
Q Consensus 14 ~li~~AklaeqaeRy~Dm~~~mk~~i~ 40 (222)
.++..|--+++.|||++++.+-+..|+
T Consensus 8 ~~a~~AVe~D~~gr~~eAi~~Y~~aIe 34 (75)
T cd02682 8 KYAINAVKAEKEGNAEDAITNYKKAIE 34 (75)
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHH
Confidence 456677788899999999988777764
No 66
>PF12603 DUF3770: Protein of unknown function (DUF3770); InterPro: IPR022531 This family is found in viruses, and is approximately 250 amino acids in length. It is found N-terminal to PF04196 from PFAM in polyproteins.; GO: 0003968 RNA-directed RNA polymerase activity
Probab=27.53 E-value=2e+02 Score=25.62 Aligned_cols=94 Identities=26% Similarity=0.381 Sum_probs=53.8
Q ss_pred ChHHHHHHHHHHHHhCCHHHHHHHHHHHHhc-cCCCCCCCHHHHHHHHHHHhhhhchhhhHHHHHHh---------hhhh
Q 027558 11 PREENVYMAKLAEQAERYEEMVEFMEKVSAS-VESSEELTVEERNLLSVAYKNVIGARRASWRIISS---------IEQK 80 (222)
Q Consensus 11 ~r~~li~~AklaeqaeRy~Dm~~~mk~~i~~-~~~~~~Ls~eERnLls~ayKn~i~~~R~s~R~l~~---------ieqk 80 (222)
+-++|+|+=+||-+ .++-||+.... ...+.+|+..||.++.+ |++.+--|..-.+ .++-
T Consensus 4 evnELvfRfRlA~~------I~ee~k~~~pel~~~Deel~k~erei~~i-----vssIq~dw~~te~kFp~f~~emfe~F 72 (250)
T PF12603_consen 4 EVNELVFRFRLARA------IMEEMKKYYPELSDDDEELSKQEREILGI-----VSSIQMDWEVTESKFPPFKEEMFENF 72 (250)
T ss_pred HHHHHHHHHHHHHH------HHHHHHHhccccccchHHHHHhHHHHHhh-----HhheecccccCcccCCccHHHHHHHH
Confidence 45799999999964 34444544311 00125666667766655 5555556655421 1111
Q ss_pred hhhcCChhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCCCC
Q 027558 81 EESRGNEDHVSTIRDYRSKIETELSSICDGILKLLDSRLIPCAS 124 (222)
Q Consensus 81 ~~~~~~~~~~~~i~~yk~kie~EL~~~C~eil~lId~~Lip~~~ 124 (222)
-.. ..=.+|..+|.++...-|++ .+++++.+....
T Consensus 73 ~~~-------~~D~dYls~iis~~~~~s~~--~l~~~~f~~~~~ 107 (250)
T PF12603_consen 73 LQT-------SADEDYLSSIISECLKESQK--DLIKSHFLGKVN 107 (250)
T ss_pred cCC-------CccHHHHHHHHHHHHHHHHH--HHHhcccccccc
Confidence 111 11157888899999999988 445666665433
No 67
>KOG4234 consensus TPR repeat-containing protein [General function prediction only]
Probab=27.36 E-value=2.6e+02 Score=24.75 Aligned_cols=29 Identities=31% Similarity=0.257 Sum_probs=24.4
Q ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHhcc
Q 027558 14 ENVYMAKLAEQAERYEEMVEFMEKVSASV 42 (222)
Q Consensus 14 ~li~~AklaeqaeRy~Dm~~~mk~~i~~~ 42 (222)
-|+-+|.+.++.+.|+++++-.|++.+..
T Consensus 170 Al~RRAeayek~ek~eealeDyKki~E~d 198 (271)
T KOG4234|consen 170 ALERRAEAYEKMEKYEEALEDYKKILESD 198 (271)
T ss_pred HHHHHHHHHHhhhhHHHHHHHHHHHHHhC
Confidence 45667999999999999999999988765
No 68
>PF05008 V-SNARE: Vesicle transport v-SNARE protein N-terminus; InterPro: IPR007705 V-SNARE proteins are required for protein traffic between eukaryotic organelles. The v-SNAREs on transport vesicles interact with t-SNAREs on target membranes in order to facilitate this []. This domain is the N-terminal half of the V-Snare proteins. ; GO: 0006886 intracellular protein transport, 0016020 membrane; PDB: 2V8S_V 1VCS_A 3ONL_C 3ONJ_A 2QYW_A.
Probab=26.19 E-value=2.3e+02 Score=19.68 Aligned_cols=43 Identities=9% Similarity=0.129 Sum_probs=24.5
Q ss_pred HHHHHHHHHHhccCCCCCCCHHHHHHHHHHHhhhhchhhhHHHHHH
Q 027558 30 EMVEFMEKVSASVESSEELTVEERNLLSVAYKNVIGARRASWRIIS 75 (222)
Q Consensus 30 Dm~~~mk~~i~~~~~~~~Ls~eERnLls~ayKn~i~~~R~s~R~l~ 75 (222)
....-+...+..- +.++.++|+-...-....+..-..-+..+.
T Consensus 3 ~l~~~i~~~l~~~---~~~~~~~r~~~i~~~e~~l~ea~~~l~qMe 45 (79)
T PF05008_consen 3 ALTAEIKSKLERI---KNLSGEQRKSLIREIERDLDEAEELLKQME 45 (79)
T ss_dssp HHHHHHHHHHHHG---GGS-CHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHh---hccChHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444332 444557887777777777777666655553
No 69
>PF08424 NRDE-2: NRDE-2, necessary for RNA interference; InterPro: IPR013633 This is domain is found in eukaryotic proteins of unknown function.
Probab=25.83 E-value=1.5e+02 Score=26.60 Aligned_cols=55 Identities=13% Similarity=0.129 Sum_probs=40.7
Q ss_pred HHHHHHHHHHHHHHHHhcC----------CCCCcchhhhhHHHHHHHHHHhCChHHHHHHHHHhcC
Q 027558 156 AESTLTAYKAAQDIANAEL----------APTHPIRLGLALNFSVFYYEILNSPDRACNLAKQVCK 211 (222)
Q Consensus 156 ~~~a~~aY~~A~~~a~~~L----------~pt~pirLgLaLN~SVF~yEi~~~~~~A~~iAk~Afd 211 (222)
+....+.|.+++....... +.+.-..|-+.+++++|..+ .|.++.|+.+.|..++
T Consensus 118 v~~~~~~y~~~l~~L~~~~~~~~~~~~~~~~~e~~~l~v~~r~~~fl~~-aG~~E~Ava~~Qa~lE 182 (321)
T PF08424_consen 118 VSDVRDVYEKCLRALSRRRSGRMTSHPDLPELEEFMLYVFLRLCRFLRQ-AGYTERAVALWQALLE 182 (321)
T ss_pred HHHHHHHHHHHHHHHHHhhccccccccchhhHHHHHHHHHHHHHHHHHH-CCchHHHHHHHHHHHH
Confidence 4456677777776654322 23355888999999999999 6999999999887654
No 70
>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals. A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.
Probab=25.61 E-value=4.5e+02 Score=22.88 Aligned_cols=60 Identities=10% Similarity=0.030 Sum_probs=38.8
Q ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHhccCCCCCCCHHHHHHHHHHHhhhhchhhhHHHHHH
Q 027558 14 ENVYMAKLAEQAERYEEMVEFMEKVSASVESSEELTVEERNLLSVAYKNVIGARRASWRIIS 75 (222)
Q Consensus 14 ~li~~AklaeqaeRy~Dm~~~mk~~i~~~~~~~~Ls~eERnLls~ayKn~i~~~R~s~R~l~ 75 (222)
-++.+|.+....|++++.......+..... ..+|.-|+..+....--..+..-.+...+.
T Consensus 8 a~~~~a~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~e~~~~~a~~~~~~g~~~~A~~~~~ 67 (355)
T cd05804 8 GHAAAALLLLLGGERPAAAAKAAAAAQALA--ARATERERAHVEALSAWIAGDLPKALALLE 67 (355)
T ss_pred HHHHHHHHHHhcCCcchHHHHHHHHHHHhc--cCCCHHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 457888888889999998888888776541 567777776654333333344444544443
No 71
>PF14689 SPOB_a: Sensor_kinase_SpoOB-type, alpha-helical domain; PDB: 1F51_C 2FTK_B 1IXM_B.
Probab=24.87 E-value=1.5e+02 Score=20.10 Aligned_cols=26 Identities=23% Similarity=0.310 Sum_probs=19.1
Q ss_pred HHHHHHHHHhCCHHHHHHHHHHHHhc
Q 027558 16 VYMAKLAEQAERYEEMVEFMEKVSAS 41 (222)
Q Consensus 16 i~~AklaeqaeRy~Dm~~~mk~~i~~ 41 (222)
+....-.-|.|+|+++.+++++++..
T Consensus 27 LqvI~gllqlg~~~~a~eYi~~~~~~ 52 (62)
T PF14689_consen 27 LQVIYGLLQLGKYEEAKEYIKELSKD 52 (62)
T ss_dssp HHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHH
Confidence 34444556789999999999999853
No 72
>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO. Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).
Probab=24.81 E-value=3.9e+02 Score=21.88 Aligned_cols=63 Identities=19% Similarity=0.170 Sum_probs=42.5
Q ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHhccCCCCC--CCHHHHHHHHHHHhhhhchhhhHHHHHHhhhh
Q 027558 13 EENVYMAKLAEQAERYEEMVEFMEKVSASVESSEE--LTVEERNLLSVAYKNVIGARRASWRIISSIEQ 79 (222)
Q Consensus 13 ~~li~~AklaeqaeRy~Dm~~~mk~~i~~~~~~~~--Ls~eERnLls~ayKn~i~~~R~s~R~l~~ieq 79 (222)
+.+..++...-+.|+|++++..+.+++... |. ...+-+..+..+|-.. +....+...+....+
T Consensus 34 ~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~---p~~~~~~~a~~~la~~~~~~-~~~~~A~~~~~~~l~ 98 (235)
T TIGR03302 34 EELYEEAKEALDSGDYTEAIKYFEALESRY---PFSPYAEQAQLDLAYAYYKS-GDYAEAIAAADRFIR 98 (235)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhC---CCchhHHHHHHHHHHHHHhc-CCHHHHHHHHHHHHH
Confidence 567778888889999999999999999876 43 3334455555555443 455556666654433
No 73
>KOG0687 consensus 26S proteasome regulatory complex, subunit RPN7/PSMD6 [Posttranslational modification, protein turnover, chaperones]
Probab=24.77 E-value=1.9e+02 Score=27.08 Aligned_cols=77 Identities=18% Similarity=0.261 Sum_probs=48.5
Q ss_pred hccccchhhhcc---chhH----HHHHHHHHHHHHHHHHHHHhcCCCCCcchhhhhHHHHHHHHHHhCChHHHHHHHHHh
Q 027558 137 GDYHRYLAEFKT---GAER----KEAAESTLTAYKAAQDIANAELAPTHPIRLGLALNFSVFYYEILNSPDRACNLAKQV 209 (222)
Q Consensus 137 gDyyRYlaE~~~---~~~~----~~~~~~a~~aY~~A~~~a~~~L~pt~pirLgLaLN~SVF~yEi~~~~~~A~~iAk~A 209 (222)
++||-|++|-.. +.+. .+.-+.=.+-..++.+-|++++.- +-+| ...+|-+-||-.| ||.+.|.+.-+.+
T Consensus 54 ap~Ye~lce~~~i~~D~~~l~~m~~~neeki~eld~~iedaeenlGE-~ev~-ea~~~kaeYycqi-gDkena~~~~~~t 130 (393)
T KOG0687|consen 54 APLYEYLCESLVIKLDQDLLNSMKKANEEKIKELDEKIEDAEENLGE-SEVR-EAMLRKAEYYCQI-GDKENALEALRKT 130 (393)
T ss_pred chHHHHHHhhcceeccHHHHHHHHHhhHHHHHHHHHHHHHHHHhcch-HHHH-HHHHHHHHHHHHh-ccHHHHHHHHHHH
Confidence 567777777322 1111 111222234455666667666553 3333 3467888888887 9999999999999
Q ss_pred cCccccc
Q 027558 210 CKPEPKL 216 (222)
Q Consensus 210 fd~Ai~~ 216 (222)
++++++.
T Consensus 131 ~~ktvs~ 137 (393)
T KOG0687|consen 131 YEKTVSL 137 (393)
T ss_pred HHHHhhc
Confidence 9998864
No 74
>PRK11189 lipoprotein NlpI; Provisional
Probab=24.74 E-value=1.5e+02 Score=26.02 Aligned_cols=29 Identities=17% Similarity=0.177 Sum_probs=26.3
Q ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHhcc
Q 027558 14 ENVYMAKLAEQAERYEEMVEFMEKVSASV 42 (222)
Q Consensus 14 ~li~~AklaeqaeRy~Dm~~~mk~~i~~~ 42 (222)
-..+++++.++.|++++++.+.++++..+
T Consensus 238 a~~~Lg~~~~~~g~~~~A~~~~~~Al~~~ 266 (296)
T PRK11189 238 TYFYLAKYYLSLGDLDEAAALFKLALANN 266 (296)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhC
Confidence 46788999999999999999999999876
No 75
>PF09986 DUF2225: Uncharacterized protein conserved in bacteria (DUF2225); InterPro: IPR018708 This conserved bacterial family has no known function.
Probab=24.21 E-value=3.7e+02 Score=22.86 Aligned_cols=70 Identities=16% Similarity=0.068 Sum_probs=43.6
Q ss_pred hccccchhhhccchhHHHHHHHHHHHHHHHHHHHHhcCCCCCcchhhhhHHHHHHHHHHhCChHHHHHHHHHhcCc
Q 027558 137 GDYHRYLAEFKTGAERKEAAESTLTAYKAAQDIANAELAPTHPIRLGLALNFSVFYYEILNSPDRACNLAKQVCKP 212 (222)
Q Consensus 137 gDyyRYlaE~~~~~~~~~~~~~a~~aY~~A~~~a~~~L~pt~pirLgLaLN~SVF~yEi~~~~~~A~~iAk~Afd~ 212 (222)
+=.||.+-+ .+.-+.+..+|.+.|++|++.- ..|.+.--...+..=-+-.++. +|+.++|.+--...+..
T Consensus 125 AWlyR~~~~---~~~E~~fl~~Al~~y~~a~~~e--~~~~~~~~~~~l~YLigeL~rr-lg~~~eA~~~fs~vi~~ 194 (214)
T PF09986_consen 125 AWLYRDLGD---EENEKRFLRKALEFYEEAYENE--DFPIEGMDEATLLYLIGELNRR-LGNYDEAKRWFSRVIGS 194 (214)
T ss_pred HHHhhccCC---HHHHHHHHHHHHHHHHHHHHhC--cCCCCCchHHHHHHHHHHHHHH-hCCHHHHHHHHHHHHcC
Confidence 455666544 3334578899999999999754 3443332233333333455554 69999998876665543
No 76
>cd02678 MIT_VPS4 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in intracellular protein transport proteins of the AAA-ATPase family. The molecular function of the MIT domain is unclear.
Probab=24.00 E-value=1.5e+02 Score=20.82 Aligned_cols=29 Identities=24% Similarity=0.201 Sum_probs=23.3
Q ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHhc
Q 027558 13 EENVYMAKLAEQAERYEEMVEFMEKVSAS 41 (222)
Q Consensus 13 ~~li~~AklaeqaeRy~Dm~~~mk~~i~~ 41 (222)
.+++..|--.+++|+|++++.+..+.++.
T Consensus 7 ~~l~~~Av~~D~~g~y~eA~~~Y~~aie~ 35 (75)
T cd02678 7 IELVKKAIEEDNAGNYEEALRLYQHALEY 35 (75)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 35666777778899999999999988853
No 77
>cd02683 MIT_1 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in proteins with unknown function, co-occuring with an as yet undescribed domain. The molecular function of the MIT domain is unclear.
Probab=23.94 E-value=2e+02 Score=20.51 Aligned_cols=29 Identities=17% Similarity=0.124 Sum_probs=23.4
Q ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHhc
Q 027558 13 EENVYMAKLAEQAERYEEMVEFMEKVSAS 41 (222)
Q Consensus 13 ~~li~~AklaeqaeRy~Dm~~~mk~~i~~ 41 (222)
-+++..|--.+++|+|++++.+-.+.++.
T Consensus 7 ~~l~~~Ave~D~~g~y~eAl~~Y~~aie~ 35 (77)
T cd02683 7 KEVLKRAVELDQEGRFQEALVCYQEGIDL 35 (77)
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHHH
Confidence 46777788889999999999888877753
No 78
>PRK15174 Vi polysaccharide export protein VexE; Provisional
Probab=23.58 E-value=7.3e+02 Score=24.63 Aligned_cols=170 Identities=11% Similarity=0.056 Sum_probs=0.0
Q ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHhccCCCCCCCHHHHHHHHHHHhhhhchhhhHHHHHHhhhhhhhhcCChhhHHHHH
Q 027558 15 NVYMAKLAEQAERYEEMVEFMEKVSASVESSEELTVEERNLLSVAYKNVIGARRASWRIISSIEQKEESRGNEDHVSTIR 94 (222)
Q Consensus 15 li~~AklaeqaeRy~Dm~~~mk~~i~~~~~~~~Ls~eERnLls~ayKn~i~~~R~s~R~l~~ieqk~~~~~~~~~~~~i~ 94 (222)
+..++.+.-+.|++++++..+++.+..+ |+...--.++... -...+....+...+..+....... .........
T Consensus 113 ~~~la~~l~~~g~~~~Ai~~l~~Al~l~---P~~~~a~~~la~~--l~~~g~~~eA~~~~~~~~~~~P~~-~~a~~~~~~ 186 (656)
T PRK15174 113 VLLVASVLLKSKQYATVADLAEQAWLAF---SGNSQIFALHLRT--LVLMDKELQAISLARTQAQEVPPR-GDMIATCLS 186 (656)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhC---CCcHHHHHHHHHH--HHHCCChHHHHHHHHHHHHhCCCC-HHHHHHHHH
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhccCCCCCCCchHHHHHHhhhccccchhhhccchhHHHHHHHHHHHHHHHHHHHHhcC
Q 027558 95 DYRSKIETELSSICDGILKLLDSRLIPCASSGDSKVFYLKMKGDYHRYLAEFKTGAERKEAAESTLTAYKAAQDIANAEL 174 (222)
Q Consensus 95 ~yk~kie~EL~~~C~eil~lId~~Lip~~~~~eskvfy~KmkgDyyRYlaE~~~~~~~~~~~~~a~~aY~~A~~~a~~~L 174 (222)
-+++.=-++-...|..++..-. .+.....-...-.+.-.|+ .+.|...|++|+.+
T Consensus 187 l~~~g~~~eA~~~~~~~l~~~~---~~~~~~~~~l~~~l~~~g~-----------------~~eA~~~~~~al~~----- 241 (656)
T PRK15174 187 FLNKSRLPEDHDLARALLPFFA---LERQESAGLAVDTLCAVGK-----------------YQEAIQTGESALAR----- 241 (656)
T ss_pred HHHcCCHHHHHHHHHHHHhcCC---CcchhHHHHHHHHHHHCCC-----------------HHHHHHHHHHHHhc-----
Q ss_pred CCCCcchhhhhHHHHHHHHHHhCChHHHHHHHHHhcCccccccCCC
Q 027558 175 APTHPIRLGLALNFSVFYYEILNSPDRACNLAKQVCKPEPKLIVPG 220 (222)
Q Consensus 175 ~pt~pirLgLaLN~SVF~yEi~~~~~~A~~iAk~Afd~Ai~~~~~~ 220 (222)
+|-......|.+..++. .|+.++|..-|...|+.|+ .+.|+
T Consensus 242 ---~p~~~~~~~~Lg~~l~~-~G~~~eA~~~A~~~~~~Al-~l~P~ 282 (656)
T PRK15174 242 ---GLDGAALRRSLGLAYYQ-SGRSREAKLQAAEHWRHAL-QFNSD 282 (656)
T ss_pred ---CCCCHHHHHHHHHHHHH-cCCchhhHHHHHHHHHHHH-hhCCC
No 79
>PF09324 DUF1981: Domain of unknown function (DUF1981); InterPro: IPR015403 This domain is functionally uncharacterised and found in various plant and yeast protein transport proteins. It is noramlly associated with and C-termianl to the SEC7 domain. The SEC7 domain was named after the first protein found to contain such a region []. It has been shown to be linked with guanine nucleotide exchange function [, ].
Probab=23.25 E-value=2.9e+02 Score=19.92 Aligned_cols=35 Identities=17% Similarity=0.410 Sum_probs=26.9
Q ss_pred CCCHHHHHHHHHHHhhhhc----hhhhHHHHHHhhhhhh
Q 027558 47 ELTVEERNLLSVAYKNVIG----ARRASWRIISSIEQKE 81 (222)
Q Consensus 47 ~Ls~eERnLls~ayKn~i~----~~R~s~R~l~~ieqk~ 81 (222)
.-+.+-|.+.-.+..++|. ..|++|+++-++-...
T Consensus 29 ~~~~~vre~il~ci~qil~~~~~~i~SGW~~if~il~~a 67 (86)
T PF09324_consen 29 NPSIDVRELILECILQILQSRGENIKSGWKVIFSILRAA 67 (86)
T ss_pred cCcHHHHHHHHHHHHHHHHHhHHHHHhccHHHHHHHHHH
Confidence 3567888888888888877 6699999997665554
No 80
>PF04212 MIT: MIT (microtubule interacting and transport) domain; InterPro: IPR007330 The MIT domain is found in vacuolar sorting proteins, spastin (probable ATPase involved in the assembly or function of nuclear protein complexes), and a sorting nexin, which may play a role in intracellular trafficking.; PDB: 2DL1_A 2JQK_A 1WR0_A 2CPT_A 2JQH_A 2V6Y_A 2JQ9_A 2K3W_A 1YXR_A 3EAB_E ....
Probab=23.23 E-value=1.7e+02 Score=19.81 Aligned_cols=27 Identities=30% Similarity=0.359 Sum_probs=22.2
Q ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHh
Q 027558 14 ENVYMAKLAEQAERYEEMVEFMEKVSA 40 (222)
Q Consensus 14 ~li~~AklaeqaeRy~Dm~~~mk~~i~ 40 (222)
.++..|--+++.|+|++++++-++.++
T Consensus 7 ~~~~~Av~~D~~g~~~~A~~~Y~~ai~ 33 (69)
T PF04212_consen 7 ELIKKAVEADEAGNYEEALELYKEAIE 33 (69)
T ss_dssp HHHHHHHHHHHTTSHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 567788888999999999988877664
No 81
>KOG3089 consensus Predicted DEAD-box-containing helicase [General function prediction only]
Probab=23.02 E-value=1.8e+02 Score=25.74 Aligned_cols=81 Identities=16% Similarity=0.235 Sum_probs=55.4
Q ss_pred hCCHHHHHHHHHHHHhccCCCCCCCHHHHHHHHHHHhhhhchhhhHHHHHHhhhhhhhhcCC-hhhHHHHHHHHHHHH-H
Q 027558 25 AERYEEMVEFMEKVSASVESSEELTVEERNLLSVAYKNVIGARRASWRIISSIEQKEESRGN-EDHVSTIRDYRSKIE-T 102 (222)
Q Consensus 25 aeRy~Dm~~~mk~~i~~~~~~~~Ls~eERnLls~ayKn~i~~~R~s~R~l~~ieqk~~~~~~-~~~~~~i~~yk~kie-~ 102 (222)
.+-.++..++|+..+... .++|+.+|-|+.-..+...-+.. +....+ ..|+ +..++.....-+|+- -
T Consensus 78 i~sPe~l~~ll~~yi~s~--~~dl~~~EL~~~~~k~~~~~dt~-------~f~~~~--~~~n~P~~Iq~~~~~~kK~vf~ 146 (271)
T KOG3089|consen 78 IGSPEDLQKLLKDYISSR--RLDLELEELNLPDSKFLKANDTT-------HFLSSY--LKGNCPKWIQLRKNHSKKKVFV 146 (271)
T ss_pred CCChHHHHHHHHHHHHhh--cCcchhhhhcchHHHHHhhhhhh-------hhchHh--hhcccHHHHHhccCCchhhhhH
Confidence 478999999999999542 39999999999887765544321 111111 1233 555565555544544 8
Q ss_pred HHHHHHHHHHHHhh
Q 027558 103 ELSSICDGILKLLD 116 (222)
Q Consensus 103 EL~~~C~eil~lId 116 (222)
++.-+|-++++-|+
T Consensus 147 ~~lI~c~sa~Ral~ 160 (271)
T KOG3089|consen 147 LMLIICSSAVRALE 160 (271)
T ss_pred HHHHHHHHHHHHHh
Confidence 88999999999997
No 82
>PF08717 nsp8: nsp8 replicase; InterPro: IPR014829 Viral Nsp8 (non structural protein 8) forms a hexadecameric supercomplex with Nsp7 that adopts a hollow cylinder-like structure []. The dimensions of the central channel and positive electrostatic properties of the cylinder imply that it confers processivity on RNA-dependent RNA polymerase []. ; GO: 0004197 cysteine-type endopeptidase activity, 0008242 omega peptidase activity, 0016740 transferase activity; PDB: 2AHM_F 3UB0_D.
Probab=22.48 E-value=72 Score=27.28 Aligned_cols=37 Identities=27% Similarity=0.301 Sum_probs=25.0
Q ss_pred HHHHHHHHHHHHHHHHhcCCCCCcchhhhhHHHHHHHHHHhCChHHHHHHHHHhcCc
Q 027558 156 AESTLTAYKAAQDIANAELAPTHPIRLGLALNFSVFYYEILNSPDRACNLAKQVCKP 212 (222)
Q Consensus 156 ~~~a~~aY~~A~~~a~~~L~pt~pirLgLaLN~SVF~yEi~~~~~~A~~iAk~Afd~ 212 (222)
-+.|.++|++|.+-. -+ | ..++...+|+.|||..||.
T Consensus 15 Ye~A~~~Ye~av~ng---~~---~--------------q~~Kql~KA~NIAKse~dr 51 (199)
T PF08717_consen 15 YETARQAYEEAVANG---SS---P--------------QELKQLKKAMNIAKSEFDR 51 (199)
T ss_dssp HHHHHHHHHHHHHCT--------H--------------HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcC---CC---H--------------HHHHHHHHHHhHHHHHHhH
Confidence 467899999987521 11 1 1346677899999988874
No 83
>PF09548 Spore_III_AB: Stage III sporulation protein AB (spore_III_AB); InterPro: IPR014198 This entry represents the stage III sporulation protein AB, which is encoded in a spore formation operon: spoIIIAABCDEFGH that is under sigma G regulation []. A comparative genome analysis of all sequenced genomes of Firmicutes shows that the proteins are strictly conserved among the sub-set of endospore-forming species.
Probab=21.86 E-value=4.4e+02 Score=21.42 Aligned_cols=77 Identities=19% Similarity=0.249 Sum_probs=43.6
Q ss_pred HHHHHHHHHhCCHH--HHHHHHHHHHhccCCCCCCCHHHHHHHHHHHhhhhchhhhHHHHHHhhhhhhhhcCChhhHHHH
Q 027558 16 VYMAKLAEQAERYE--EMVEFMEKVSASVESSEELTVEERNLLSVAYKNVIGARRASWRIISSIEQKEESRGNEDHVSTI 93 (222)
Q Consensus 16 i~~AklaeqaeRy~--Dm~~~mk~~i~~~~~~~~Ls~eERnLls~ayKn~i~~~R~s~R~l~~ieqk~~~~~~~~~~~~i 93 (222)
.++.+++++.++-+ +..+..++.++.......|+.+|+.+|...-+++=..- .+.+.+.+
T Consensus 68 ~~f~~~a~~L~~~~~~~~~~~w~~~~~~~~~~~~L~~~d~e~L~~lg~~LG~~D------------------~~~Q~k~i 129 (170)
T PF09548_consen 68 EFFERVAERLEKNEGESFAEAWEEAVEKLLKESALKKEDKEILLELGKSLGYSD------------------REMQEKHI 129 (170)
T ss_pred HHHHHHHHHHHcCCCCCHHHHHHHHHHhhhhcCCCCHHHHHHHHHHHHHHccCC------------------HHHHHHHH
Confidence 35666666655544 55555555554311226788888888877766543221 23345556
Q ss_pred HHHHHHHHHHHHHHHHH
Q 027558 94 RDYRSKIETELSSICDG 110 (222)
Q Consensus 94 ~~yk~kie~EL~~~C~e 110 (222)
+-+.+.++.++...-.+
T Consensus 130 ~l~~~~L~~~~~~a~~~ 146 (170)
T PF09548_consen 130 ELYLEQLEQQLEEAREE 146 (170)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 66666666665544433
No 84
>PF00244 14-3-3: 14-3-3 protein; InterPro: IPR023410 The 14-3-3 proteins are a large family of approximately 30kDa acidic proteins which exist primarily as homo- and heterodimeric within all eukaryotic cells [, ]. There is a high degree of sequence identity and conservation between all the 14-3-3 isotypes, particularly in the regions which form the dimer interface or line the central ligand binding channel of the dimeric molecule. Each 14-3-3 protein sequence can be roughly divided into three sections: a divergent amino terminus, the conserved core region and a divergent carboxyl terminus. The conserved middle core region of the 14-3-3s encodes an amphipathic groove that forms the main functional domain, a cradle for interacting with client proteins. The monomer consists of nine helices organised in an antiparallel manner, forming an L-shaped structure. The interior of the L-structure is composed of four helices: H3 and H5, which contain many charged and polar amino acids, and H7 and H9, which contain hydrophobic amino acids. These four helices form the concave amphipathic groove that interacts with target peptides. 14-3-3 proteins mainly bind proteins containing phosphothreonine or phosphoserine motifs however exceptions to this rule do exist. Extensive investigation of the 14-3-3 binding site of the mammalian serine/threonine kinase Raf-1 has produced a consensus sequence for 14-3-3-binding, RSxpSxP (in the single-letter amino-acid code, where x denotes any amino acid and p indicates that the next residue is phosphorylated). 14-3-3 proteins appear to effect intracellular signalling in one of three ways - by direct regulation of the catalytic activity of the bound protein, by regulating interactions between the bound protein and other molecules in the cell by sequestration or modification or by controlling the subcellular localisation of the bound ligand. Proteins appear to initially bind to a single dominant site and then subsequently to many, much weaker secondary interaction sites. The 14-3-3 dimer is capable of changing the conformation of its bound ligand whilst itself undergoing minimal structural alteration. This entry represents the structural domain found in 14-3-3 proteins.; PDB: 2O8P_A 3AXY_D 2C74_A 2C63_A 4DX0_A 1YWT_A 3P1O_A 3P1N_A 4DAU_A 3U9X_A ....
Probab=21.73 E-value=2.6e+02 Score=24.13 Aligned_cols=58 Identities=19% Similarity=0.233 Sum_probs=36.4
Q ss_pred HHHHHHHHHHHHHHHhhhccCCCCCC-----CchHHHHHHhhhccccchhhhccchhHHHHHHHHHHHHHHHHHHH
Q 027558 100 IETELSSICDGILKLLDSRLIPCASS-----GDSKVFYLKMKGDYHRYLAEFKTGAERKEAAESTLTAYKAAQDIA 170 (222)
Q Consensus 100 ie~EL~~~C~eil~lId~~Lip~~~~-----~eskvfy~KmkgDyyRYlaE~~~~~~~~~~~~~a~~aY~~A~~~a 170 (222)
..+.-..--++.+++....|-|.... -.-.|||+.+.|| ..++++-|.++|++|..-.
T Consensus 141 ~~~~a~~aY~~A~~~a~~~L~~~~p~rLgl~LN~svF~yei~~~-------------~~~A~~ia~~afd~a~~~l 203 (236)
T PF00244_consen 141 AAEKALEAYEEALEIAKKELPPTHPLRLGLALNYSVFYYEILND-------------PEKAIEIAKQAFDEAISEL 203 (236)
T ss_dssp HHHHHHHHHHHHHHHHHHHSCTTSHHHHHHHHHHHHHHHHTSS--------------HHHHHHHHHHHHHHHHHGG
T ss_pred HHHHHHHhhhhHHHHHhcccCCCCcHHHHHHHHHHHHHHHHcCC-------------hHHHHHHHHHHHHHHHhhh
Confidence 34444455566777777776444311 1456888877766 3467788888888887644
No 85
>PF09969 DUF2203: Uncharacterized conserved protein (DUF2203); InterPro: IPR018699 This family has no known function.
Probab=21.39 E-value=4e+02 Score=20.76 Aligned_cols=66 Identities=18% Similarity=0.232 Sum_probs=41.1
Q ss_pred CCHHHHHHHHHHHhhhhchhhhHHHHHHhhhhhhhhcCChhhHHHHHHHHHHHHHHHHHHHHHHHH
Q 027558 48 LTVEERNLLSVAYKNVIGARRASWRIISSIEQKEESRGNEDHVSTIRDYRSKIETELSSICDGILK 113 (222)
Q Consensus 48 Ls~eERnLls~ayKn~i~~~R~s~R~l~~ieqk~~~~~~~~~~~~i~~yk~kie~EL~~~C~eil~ 113 (222)
+|.+|-|-+---.+.++...+...+.+....+.-............+...+.+..++....++|-+
T Consensus 3 FTl~EA~~lLP~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~ 68 (120)
T PF09969_consen 3 FTLEEANALLPLLRPILEEIRELKAELEELEERLQELEDSLEVNGLEAELEELEARLRELIDEIEE 68 (120)
T ss_pred cCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchhhHHhHHHHHHHHHHHHHHHHHHHHH
Confidence 678888888888888888888888888766554322111112233445556666666666666543
No 86
>PF01535 PPR: PPR repeat; InterPro: IPR002885 This entry represents the PPR repeat. Pentatricopeptide repeat (PPR) proteins are characterised by tandem repeats of a degenerate 35 amino acid motif []. Most of PPR proteins have roles in mitochondria or plastid []. PPR repeats were discovered while screening Arabidopsis proteins for those predicted to be targeted to mitochondria or chloroplast [, ]. Some of these proteins have been shown to play a role in post-transcriptional processes within organelles and they are thought to be sequence-specific RNA-binding proteins [, , ]. Plant genomes have between one hundred to five hundred PPR genes per genome whereas non-plant genomes encode two to six PPR proteins. Although no PPR structures are yet known, the motif is predicted to fold into a helix-turn-helix structure similar to those found in the tetratricopeptide repeat (TPR) family (see PDOC50005 from PROSITEDOC) []. The plant PPR protein family has been divided in two subfamilies on the basis of their motif content and organisation [, ]. Examples of PPR repeat-containing proteins include PET309 P32522 from SWISSPROT, which may be involved in RNA stabilisation [], and crp1, which is involved in RNA processing []. The repeat is associated with a predicted plant protein O49549 from SWISSPROT that has a domain organisation similar to the human BRCA1 protein.
Probab=21.20 E-value=1.4e+02 Score=16.02 Aligned_cols=24 Identities=13% Similarity=0.249 Sum_probs=18.8
Q ss_pred HHHHHHHhCCHHHHHHHHHHHHhc
Q 027558 18 MAKLAEQAERYEEMVEFMEKVSAS 41 (222)
Q Consensus 18 ~AklaeqaeRy~Dm~~~mk~~i~~ 41 (222)
+.+..-+.|+++++.+.++++.+.
T Consensus 6 li~~~~~~~~~~~a~~~~~~M~~~ 29 (31)
T PF01535_consen 6 LISGYCKMGQFEEALEVFDEMRER 29 (31)
T ss_pred HHHHHHccchHHHHHHHHHHHhHC
Confidence 445566789999999999888764
No 87
>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=21.15 E-value=8.8e+02 Score=24.64 Aligned_cols=30 Identities=20% Similarity=0.183 Sum_probs=26.0
Q ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHhcc
Q 027558 13 EENVYMAKLAEQAERYEEMVEFMEKVSASV 42 (222)
Q Consensus 13 ~~li~~AklaeqaeRy~Dm~~~mk~~i~~~ 42 (222)
+-+.-+|.+..+.|||+|+......+++..
T Consensus 87 ~~~~~La~i~~~~g~~~ea~~~l~~~~~~~ 116 (694)
T PRK15179 87 LFQVLVARALEAAHRSDEGLAVWRGIHQRF 116 (694)
T ss_pred HHHHHHHHHHHHcCCcHHHHHHHHHHHhhC
Confidence 456678999999999999999999999876
No 88
>KOG4507 consensus Uncharacterized conserved protein, contains TPR repeats [Function unknown]
Probab=21.09 E-value=76 Score=32.04 Aligned_cols=60 Identities=13% Similarity=0.142 Sum_probs=35.5
Q ss_pred HHHHHhhhccccchhhhccchhHHHHHHHHHHHHHHHHHHHHhcCCCCCcchhhhhHHHHHHHHHHhCChHHHHHHHHHh
Q 027558 130 VFYLKMKGDYHRYLAEFKTGAERKEAAESTLTAYKAAQDIANAELAPTHPIRLGLALNFSVFYYEILNSPDRACNLAKQV 209 (222)
Q Consensus 130 vfy~KmkgDyyRYlaE~~~~~~~~~~~~~a~~aY~~A~~~a~~~L~pt~pirLgLaLN~SVF~yEi~~~~~~A~~iAk~A 209 (222)
-|||+|+|.- -.|..||-.|.-.+..+..-+--+-||..||- +|-...|--|--.|
T Consensus 220 s~YWR~~G~~-----------------~~A~~Ca~~a~hf~~~h~kdi~lLSlaTiL~R-------aG~sadA~iILhAA 275 (886)
T KOG4507|consen 220 SFYWRIKGEP-----------------YQAVECAMRALHFSSRHNKDIALLSLATVLHR-------AGFSADAAVILHAA 275 (886)
T ss_pred HHHHHHcCCh-----------------hhhhHHHHHHhhhCCcccccchhhhHHHHHHH-------cccccchhheeehh
Confidence 4777777763 35788888888777543333333444555664 34444555555556
Q ss_pred cCcc
Q 027558 210 CKPE 213 (222)
Q Consensus 210 fd~A 213 (222)
.++|
T Consensus 276 ~~dA 279 (886)
T KOG4507|consen 276 LDDA 279 (886)
T ss_pred ccCC
Confidence 6665
No 89
>cd02681 MIT_calpain7_1 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in the nuclear thiol protease PalBH. The molecular function of the MIT domain is unclear.
Probab=21.07 E-value=1.8e+02 Score=20.90 Aligned_cols=27 Identities=22% Similarity=0.325 Sum_probs=20.3
Q ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHh
Q 027558 14 ENVYMAKLAEQAERYEEMVEFMEKVSA 40 (222)
Q Consensus 14 ~li~~AklaeqaeRy~Dm~~~mk~~i~ 40 (222)
+++-.|=-++++|+|++++.+=+..++
T Consensus 8 ~~a~~Ave~D~~g~y~eA~~~Y~~aie 34 (76)
T cd02681 8 QFARLAVQRDQEGRYSEAVFYYKEAAQ 34 (76)
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHH
Confidence 455566666889999999988777664
No 90
>smart00745 MIT Microtubule Interacting and Trafficking molecule domain.
Probab=20.63 E-value=3e+02 Score=18.95 Aligned_cols=28 Identities=32% Similarity=0.347 Sum_probs=22.1
Q ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHhc
Q 027558 14 ENVYMAKLAEQAERYEEMVEFMEKVSAS 41 (222)
Q Consensus 14 ~li~~AklaeqaeRy~Dm~~~mk~~i~~ 41 (222)
+++..|--.++.|+|++++.+.++.++.
T Consensus 10 ~li~~Av~~d~~g~~~eAl~~Y~~a~e~ 37 (77)
T smart00745 10 ELISKALKADEAGDYEEALELYKKAIEY 37 (77)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 4566777778899999999998887753
No 91
>PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis []. It is also involved in sporulation [].
Probab=20.15 E-value=2e+02 Score=25.10 Aligned_cols=56 Identities=16% Similarity=0.201 Sum_probs=45.2
Q ss_pred HHHHHHHHHHHHHHHHhcCCCCCcchhh-hhHHHHHHHHHHhCChHHHHHHHHHhcCc
Q 027558 156 AESTLTAYKAAQDIANAELAPTHPIRLG-LALNFSVFYYEILNSPDRACNLAKQVCKP 212 (222)
Q Consensus 156 ~~~a~~aY~~A~~~a~~~L~pt~pirLg-LaLN~SVF~yEi~~~~~~A~~iAk~Afd~ 212 (222)
.+.|.-.|.++-.... .++|....+|+ +.+|+++-.+.--++.+.|+..-++|||-
T Consensus 9 ~~~A~~~~~K~~~~~~-~~~~~~~~~La~~~yn~G~~l~~~~~~~~~a~~wL~~a~~~ 65 (278)
T PF08631_consen 9 LDLAEHMYSKAKDLLN-SLDPDMAEELARVCYNIGKSLLSKKDKYEEAVKWLQRAYDI 65 (278)
T ss_pred HHHHHHHHHHhhhHHh-cCCcHHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHH
Confidence 3467778888877765 78888888888 77899999998533999999999999875
No 92
>cd05493 Bromo_ALL-1 Bromodomain, ALL-1 like proteins. ALL-1 is a vertebrate homologue of Drosophila trithorax and is often affected in chromosomal rearrangements that are linked to acute leukemias, such as acute lymphocytic leukemia (ALL). Bromodomains are found in many chromatin-associated proteins and in nuclear histone acetyltransferases. They interact specifically with acetylated lysine.
Probab=20.13 E-value=1.2e+02 Score=24.29 Aligned_cols=38 Identities=21% Similarity=0.350 Sum_probs=25.4
Q ss_pred HHHHHHHHHHHHHHhhhccCCCCCCC-------chHHHHHHhhhc
Q 027558 101 ETELSSICDGILKLLDSRLIPCASSG-------DSKVFYLKMKGD 138 (222)
Q Consensus 101 e~EL~~~C~eil~lId~~Lip~~~~~-------eskvfy~KmkgD 138 (222)
.+=+.++|+||+.+|...|......+ -.|-||+|.-=+
T Consensus 74 Y~sv~~F~~DvvkIiqa~l~~e~~~pe~~ka~s~~Ksf~ik~me~ 118 (131)
T cd05493 74 YTSVLDFSDDIVKIIQAALNSEGGQPEIKKANSMAKSFFIKLMES 118 (131)
T ss_pred eehHHHHHHHHHHHHHHHHhhccCCccccCcchHHHHHHHHHHHH
Confidence 35578899999999988885433222 256688776433
No 93
>TIGR00756 PPR pentatricopeptide repeat domain (PPR motif). This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR.
Probab=20.07 E-value=1.7e+02 Score=15.84 Aligned_cols=25 Identities=20% Similarity=0.195 Sum_probs=19.7
Q ss_pred HHHHHHHhCCHHHHHHHHHHHHhcc
Q 027558 18 MAKLAEQAERYEEMVEFMEKVSASV 42 (222)
Q Consensus 18 ~AklaeqaeRy~Dm~~~mk~~i~~~ 42 (222)
+..-.-+.|+++++.+.++++...+
T Consensus 6 li~~~~~~~~~~~a~~~~~~M~~~g 30 (35)
T TIGR00756 6 LIDGLCKAGRVEEALELFKEMLERG 30 (35)
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHcC
Confidence 3455668899999999999987654
Done!