Your job contains 1 sequence.
>027559
MNLFLKTKDTSMFNLLLTLLGISIRLLIKLENIELNECVTMLDILLLIIHHLQCLSSILL
AVGGDMAQLCQKHLKPNDFIYVTGQLHSYSKVDKNGKLCLCYKVVVEDFNYVRECGQGLA
FKKSVESKSRGGEAGMEKYENRFYLWHVYFANPYEWWDNRKNKLYPGAPDFKHKSTGEAL
WLDPKDPPWVKKQLQRIDSMMEERGSRDLGSLSRVSTWVYDE
BLASTP 2.0MP-WashU [04-May-2006] [linux26-i686-ILP32F64 2006-05-09T11:47:08]
Copyright (C) 1996-2006 Washington University, Saint Louis, Missouri USA.
All Rights Reserved.
Reference: Gish, W. (1996-2006) http://blast.wustl.edu
Query= 027559
(222 letters)
Database: go_20130330-seqdb.fasta
368,745 sequences; 169,044,731 total letters.
Searching....10....20....30....40....50....60....70....80....90....100% done
Smallest
Sum
High Probability
Sequences producing High-scoring Segment Pairs: Score P(N) N
TAIR|locus:2015353 - symbol:OSB1 "Organellar Single-stran... 294 5.2e-26 1
TAIR|locus:2119767 - symbol:PTAC9 "plastid transcriptiona... 150 4.7e-10 1
TAIR|locus:505006672 - symbol:OSB3 "organellar single-str... 148 1.1e-09 1
TAIR|locus:2015721 - symbol:OSB4 "organellar single-stran... 131 1.1e-07 1
>TAIR|locus:2015353 [details] [associations]
symbol:OSB1 "Organellar Single-stranded" species:3702
"Arabidopsis thaliana" [GO:0003697 "single-stranded DNA binding"
evidence=IEA;IDA] [GO:0009507 "chloroplast" evidence=ISM]
[GO:0000002 "mitochondrial genome maintenance" evidence=IMP]
[GO:0005739 "mitochondrion" evidence=IDA] [GO:0045910 "negative
regulation of DNA recombination" evidence=IMP] [GO:0048046
"apoplast" evidence=IDA] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=RCA] [GO:0043687 "post-translational
protein modification" evidence=RCA] [GO:0045893 "positive
regulation of transcription, DNA-dependent" evidence=RCA]
InterPro:IPR000424 PROSITE:PS50935 EMBL:CP002684
GenomeReviews:CT485782_GR GO:GO:0005739 GO:GO:0048046 GO:GO:0003697
GO:GO:0000002 InterPro:IPR012340 SUPFAM:SSF50249 EMBL:AC012463
EMBL:AC007519 GO:GO:0045910 EMBL:BT005269 EMBL:AK119114
IPI:IPI00522831 RefSeq:NP_175203.2 UniGene:At.38566
ProteinModelPortal:Q9SX99 STRING:Q9SX99 EnsemblPlants:AT1G47720.1
GeneID:841183 KEGG:ath:AT1G47720 TAIR:At1g47720 eggNOG:NOG311682
HOGENOM:HOG000092997 InParanoid:Q9SX99 OMA:SAVYHHA PhylomeDB:Q9SX99
ProtClustDB:CLSN2918339 Genevestigator:Q9SX99 Uniprot:Q9SX99
Length = 261
Score = 294 (108.6 bits), Expect = 5.2e-26, P = 5.2e-26
Identities = 66/150 (44%), Positives = 86/150 (57%)
Query: 66 MAQLCQKHLKPNDFIYVTGQLHSYSKV--DKNGKLCLCYKVVVEDFNYVREC-GQGLAFK 122
MA+ C HLK ND I V+G+L SYSK D L L Y+V V + NYV L +
Sbjct: 106 MARTCIAHLKLNDHILVSGRLESYSKSSSDVYSGLNLDYQVKVAEVNYVAAPPSHVLDSQ 165
Query: 123 KSVESKSRGGEAGMEKYENRFYLWHVYFANPYEWWDNRKNKLYPGAPDFKHKSTGEALWL 182
S K++ + E ++ YLW V+F+NPY+WWDNR+NK P PDFKHK TGEALWL
Sbjct: 166 ISKNPKTKTEDDIEESKKDEIYLWQVFFSNPYDWWDNRRNKKNPKQPDFKHKDTGEALWL 225
Query: 183 DPKDPPWVKKQLQRIDSMM----EERGSRD 208
P W+ ++L+ D EE+ RD
Sbjct: 226 CSDLPDWITRRLELFDQKNRFYDEEKTRRD 255
>TAIR|locus:2119767 [details] [associations]
symbol:PTAC9 "plastid transcriptionally active 9"
species:3702 "Arabidopsis thaliana" [GO:0003697 "single-stranded
DNA binding" evidence=IEA] [GO:0008150 "biological_process"
evidence=ND] [GO:0009507 "chloroplast" evidence=ISM] [GO:0009295
"nucleoid" evidence=IDA] [GO:0009508 "plastid chromosome"
evidence=IDA] InterPro:IPR000424 PROSITE:PS50935 GO:GO:0009507
EMBL:CP002687 GenomeReviews:CT486007_GR EMBL:AL021637 EMBL:AL161552
GO:GO:0003697 Gene3D:2.40.50.140 InterPro:IPR012340 SUPFAM:SSF50249
EMBL:AK118242 EMBL:BT026461 IPI:IPI00529933 IPI:IPI00656999
PIR:T04885 RefSeq:NP_001031674.1 RefSeq:NP_567593.1 UniGene:At.1899
ProteinModelPortal:Q8GXH3 SMR:Q8GXH3 STRING:Q8GXH3 PaxDb:Q8GXH3
PRIDE:Q8GXH3 EnsemblPlants:AT4G20010.1 GeneID:827746
KEGG:ath:AT4G20010 TAIR:At4g20010 eggNOG:NOG326142
HOGENOM:HOG000114724 InParanoid:O49428 OMA:PNEIAYE PhylomeDB:Q8GXH3
ProtClustDB:CLSN2688130 Genevestigator:Q8GXH3 GO:GO:0009508
Uniprot:Q8GXH3
Length = 371
Score = 150 (57.9 bits), Expect = 4.7e-10, P = 4.7e-10
Identities = 46/169 (27%), Positives = 81/169 (47%)
Query: 64 GDMAQLCQKHLKPNDFIYVTGQLHSYSKVDKNGKLCLCYKVVVEDFNYVRECGQGLAFKK 123
GD+A+ +++ +D I+V+G+L S +V+V++ N+++ +
Sbjct: 146 GDLAKTAARYVSKDDQIHVSGKLFIDSPPPNMTYAQANVQVLVQNLNFIQPMSPSPS-PF 204
Query: 124 SVESKSRGGEAGMEKYENRFYL----------WHVYFANPYEWWDNRKNKLY----PGAP 169
V S S E+G++K R W+ NP EWWD+R+NK+ P P
Sbjct: 205 MVMSSSEKEESGIKKQPARAKQDIVIDEASDSWNHLIENPKEWWDHRENKVNGLVKPRHP 264
Query: 170 DFKHKSTGEALWLDPKDPPWVKKQLQRIDSMMEERGSRDLGSLSRVSTW 218
DFK K + +LWL+ K P WV +L+ ++ + +R + L +W
Sbjct: 265 DFKSKDSSFSLWLN-KAPNWVLPKLEGLEFDVLVPKARVVKQLKGEESW 312
Score = 149 (57.5 bits), Expect = 6.1e-10, P = 6.1e-10
Identities = 28/57 (49%), Positives = 34/57 (59%)
Query: 146 WHVYFANPYEWWDNRKNKLYPGAPDFKHKSTGEALWLDPKDPPWVKKQLQRIDSMME 202
W NP +WWDNR +K APDFKHK TGEALWL+ + P WV +L + E
Sbjct: 312 WKDLVQNPDKWWDNRIDKRNAKAPDFKHKETGEALWLN-ESPTWVLPKLPPVKKKQE 367
>TAIR|locus:505006672 [details] [associations]
symbol:OSB3 "organellar single-stranded DNA binding
protein 3" species:3702 "Arabidopsis thaliana" [GO:0003697
"single-stranded DNA binding" evidence=IEA] [GO:0008150
"biological_process" evidence=ND] [GO:0009507 "chloroplast"
evidence=ISM;IDA] [GO:0005739 "mitochondrion" evidence=IDA]
InterPro:IPR000424 PROSITE:PS50935 GO:GO:0005739 EMBL:CP002688
GO:GO:0009507 GO:GO:0003697 Gene3D:2.40.50.140 InterPro:IPR012340
SUPFAM:SSF50249 IPI:IPI00535730 RefSeq:NP_974885.1 UniGene:At.19937
ProteinModelPortal:F4KBP3 PRIDE:F4KBP3 EnsemblPlants:AT5G44785.2
GeneID:834508 KEGG:ath:AT5G44785 OMA:EISNWIN Uniprot:F4KBP3
Length = 442
Score = 148 (57.2 bits), Expect = 1.1e-09, P = 1.1e-09
Identities = 29/68 (42%), Positives = 35/68 (51%)
Query: 135 GMEKYENRFYLWHVYFANPYEWWDNRKNKLYPGAPDFKHKSTGEALWLDPKDPPWVKKQL 194
G K R +W NP +WWDNR +K P PDFKHK TGEALW+ P W +L
Sbjct: 371 GNLKQLKREEIWKNLVENPSKWWDNRLDKRNPKGPDFKHKETGEALWIGDS-PTWALSKL 429
Query: 195 QRIDSMME 202
+ E
Sbjct: 430 PPLKKNQE 437
Score = 141 (54.7 bits), Expect = 6.3e-09, P = 6.3e-09
Identities = 48/169 (28%), Positives = 77/169 (45%)
Query: 64 GDMAQLCQKHLKPNDFIYVTGQLHSYSKVDKNGKLCLCYKVVVEDFNYVRECGQGLAF-- 121
GD+A++ +H+K D I+V+G+L S +V+V++ N+V+
Sbjct: 129 GDLAKIAVQHVKKEDRIHVSGKLFIDSPPPNVTYSQSNVQVMVQNLNFVQAATSTTKTIS 188
Query: 122 --KKSVES-KSRGGEAGMEKY--ENRFYLWHVYFANPYEWWDNRKNK----LYPGAPDFK 172
+K V S K + + K E W NP EW D+R NK + PG PDFK
Sbjct: 189 PPEKEVTSIKKKPARSKKVKVIDEETSNSWKHLIENPKEWLDHRGNKANGLVKPGHPDFK 248
Query: 173 HKSTGEALWLDPKDPPWVKKQLQRID-SMMEERGSRDLGSLSRVS--TW 218
K G +LWL P W +L+ + ++ +G+ L L + +W
Sbjct: 249 MKVGGLSLWLSTA-PDWALLKLEELKFDVLVPKGNIKLNQLKDIGEESW 296
Score = 125 (49.1 bits), Expect = 3.4e-06, P = 3.4e-06
Identities = 25/57 (43%), Positives = 30/57 (52%)
Query: 146 WHVYFANPYEWWDNRKNKLYPGAPDFKHKSTGEALWLDPKDPPWVKKQLQRIDSMME 202
W NP +W DNR +K PDFKHK TGEALW+ P WV +L + E
Sbjct: 296 WKDLVQNPDKWLDNRSDKTNVKYPDFKHKETGEALWMT-NSPIWVLSKLPPLKKNQE 351
>TAIR|locus:2015721 [details] [associations]
symbol:OSB4 "organellar single-stranded DNA binding
protein 4" species:3702 "Arabidopsis thaliana" [GO:0003697
"single-stranded DNA binding" evidence=IEA] [GO:0008150
"biological_process" evidence=ND] [GO:0009507 "chloroplast"
evidence=ISM] InterPro:IPR000424 PROSITE:PS50935 EMBL:CP002684
GenomeReviews:CT485782_GR GO:GO:0009507 GO:GO:0003697
Gene3D:2.40.50.140 InterPro:IPR012340 SUPFAM:SSF50249 EMBL:AC000107
HOGENOM:HOG000114724 ProtClustDB:CLSN2688130 EMBL:AY086580
IPI:IPI00528208 PIR:G86435 RefSeq:NP_564370.1 UniGene:At.40440
ProteinModelPortal:Q9FYJ2 SMR:Q9FYJ2 PaxDb:Q9FYJ2 PRIDE:Q9FYJ2
EnsemblPlants:AT1G31010.1 GeneID:839987 KEGG:ath:AT1G31010
TAIR:At1g31010 eggNOG:NOG304474 InParanoid:Q9FYJ2 OMA:VISHEPS
PhylomeDB:Q9FYJ2 Genevestigator:Q9FYJ2 Uniprot:Q9FYJ2
Length = 360
Score = 131 (51.2 bits), Expect = 1.1e-07, P = 1.1e-07
Identities = 24/49 (48%), Positives = 29/49 (59%)
Query: 146 WHVYFANPYEWWDNRKNKLYPGAPDFKHKSTGEALWLDPKDPPWVKKQL 194
W N +WWDNR +K P +PDFKHK TG LWL P WV ++L
Sbjct: 296 WKDLVDNMNKWWDNRVDKRTPKSPDFKHKETGVGLWLSDS-PSWVLEKL 343
Parameters:
V=100
filter=SEG
E=0.001
ctxfactor=1.00
Query ----- As Used ----- ----- Computed ----
Frame MatID Matrix name Lambda K H Lambda K H
+0 0 BLOSUM62 0.319 0.135 0.438 same same same
Q=9,R=2 0.244 0.0300 0.180 n/a n/a n/a
Query
Frame MatID Length Eff.Length E S W T X E2 S2
+0 0 222 180 0.00092 109 3 11 22 0.43 32
31 0.39 35
Statistics:
Database: /share/blast/go-seqdb.fasta
Title: go_20130330-seqdb.fasta
Posted: 5:47:42 AM PDT Apr 1, 2013
Created: 5:47:42 AM PDT Apr 1, 2013
Format: XDF-1
# of letters in database: 169,044,731
# of sequences in database: 368,745
# of database sequences satisfying E: 4
No. of states in DFA: 611 (65 KB)
Total size of DFA: 195 KB (2110 KB)
Time to generate neighborhood: 0.00u 0.00s 0.00t Elapsed: 00:00:00
No. of threads or processors used: 24
Search cpu time: 16.14u 0.15s 16.29t Elapsed: 00:00:01
Total cpu time: 16.15u 0.15s 16.30t Elapsed: 00:00:01
Start: Tue May 21 00:30:12 2013 End: Tue May 21 00:30:13 2013