BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 027559
(222 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q9SX99|OSB1_ARATH Protein OSB1, mitochondrial OS=Arabidopsis thaliana GN=OSB1 PE=1
SV=1
Length = 261
Score = 116 bits (290), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 68/158 (43%), Positives = 89/158 (56%), Gaps = 7/158 (4%)
Query: 58 ILLAVGGDMAQLCQKHLKPNDFIYVTGQLHSYSKV--DKNGKLCLCYKVVVEDFNYVREC 115
I L + MA+ C HLK ND I V+G+L SYSK D L L Y+V V + NYV
Sbjct: 98 ISLRMWDAMARTCIAHLKLNDHILVSGRLESYSKSSSDVYSGLNLDYQVKVAEVNYVAAP 157
Query: 116 -GQGLAFKKSVESKSRGGEAGMEKYENRFYLWHVYFANPYEWWDNRKNKLYPGAPDFKHK 174
L + S K++ + E ++ YLW V+F+NPY+WWDNR+NK P PDFKHK
Sbjct: 158 PSHVLDSQISKNPKTKTEDDIEESKKDEIYLWQVFFSNPYDWWDNRRNKKNPKQPDFKHK 217
Query: 175 STGEALWLDPKDPPWVKKQLQRIDSMM----EERGSRD 208
TGEALWL P W+ ++L+ D EE+ RD
Sbjct: 218 DTGEALWLCSDLPDWITRRLELFDQKNRFYDEEKTRRD 255
>sp|Q8GXH3|OSB2_ARATH Protein OSB2, chloroplastic OS=Arabidopsis thaliana GN=OSB2 PE=1
SV=2
Length = 371
Score = 61.2 bits (147), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 44/155 (28%), Positives = 76/155 (49%), Gaps = 16/155 (10%)
Query: 58 ILLAVGGDMAQLCQKHLKPNDFIYVTGQLHSYSKVDKNGKLCLCYKVVVEDFNYVRECGQ 117
I + GD+A+ +++ +D I+V+G+L S +V+V++ N+++
Sbjct: 140 IPIIFEGDLAKTAARYVSKDDQIHVSGKLFIDSPPPNMTYAQANVQVLVQNLNFIQPMSP 199
Query: 118 GLAFKKSVESKSRGGEAGMEKYENRFYL----------WHVYFANPYEWWDNRKNK---- 163
+ V S S E+G++K R W+ NP EWWD+R+NK
Sbjct: 200 SPS-PFMVMSSSEKEESGIKKQPARAKQDIVIDEASDSWNHLIENPKEWWDHRENKVNGL 258
Query: 164 LYPGAPDFKHKSTGEALWLDPKDPPWVKKQLQRID 198
+ P PDFK K + +LWL+ K P WV +L+ ++
Sbjct: 259 VKPRHPDFKSKDSSFSLWLN-KAPNWVLPKLEGLE 292
Score = 57.0 bits (136), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 28/57 (49%), Positives = 34/57 (59%), Gaps = 1/57 (1%)
Query: 146 WHVYFANPYEWWDNRKNKLYPGAPDFKHKSTGEALWLDPKDPPWVKKQLQRIDSMME 202
W NP +WWDNR +K APDFKHK TGEALWL+ + P WV +L + E
Sbjct: 312 WKDLVQNPDKWWDNRIDKRNAKAPDFKHKETGEALWLN-ESPTWVLPKLPPVKKKQE 367
>sp|Q8GWJ4|OSB3_ARATH Protein OSB3, chloroplastic/mitochondrial OS=Arabidopsis thaliana
GN=OSB3 PE=2 SV=1
Length = 440
Score = 56.6 bits (135), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 27/61 (44%), Positives = 33/61 (54%), Gaps = 1/61 (1%)
Query: 142 RFYLWHVYFANPYEWWDNRKNKLYPGAPDFKHKSTGEALWLDPKDPPWVKKQLQRIDSMM 201
R +W NP +WWDNR +K P PDFKHK TGEALW+ P W +L +
Sbjct: 376 REEIWKNLVENPSKWWDNRLDKRNPKGPDFKHKETGEALWIG-DSPTWALSKLPPLKKNQ 434
Query: 202 E 202
E
Sbjct: 435 E 435
Score = 53.5 bits (127), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 49/173 (28%), Positives = 78/173 (45%), Gaps = 13/173 (7%)
Query: 58 ILLAVGGDMAQLCQKHLKPNDFIYVTGQLHSYSKVDKNGKLCLCYKVVVEDFNYVRECGQ 117
I + GD+A++ +H+K D I+V+G+L S +V+V++ N+V+
Sbjct: 123 IPIIFEGDLAKIAVQHVKKEDRIHVSGKLFIDSPPPNVTYSQSNVQVMVQNLNFVQAATS 182
Query: 118 GL----AFKKSVES-KSRGGEAGMEKY--ENRFYLWHVYFANPYEWWDNRKNK----LYP 166
+K V S K + + K E W NP EW D+R NK + P
Sbjct: 183 TTKTISPPEKEVTSIKKKPARSKKVKVIDEETSNSWKHLIENPKEWLDHRGNKANGLVKP 242
Query: 167 GAPDFKHKSTGEALWLDPKDPPWVKKQLQRID-SMMEERGSRDLGSLSRVSTW 218
G PDFK K G +LWL P W +L+ + ++ +G+ L L +W
Sbjct: 243 GHPDFKMKVGGLSLWLS-TAPDWALLKLEELKFDVLVPKGNIKLNQLKGEESW 294
Score = 46.2 bits (108), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 25/57 (43%), Positives = 30/57 (52%), Gaps = 1/57 (1%)
Query: 146 WHVYFANPYEWWDNRKNKLYPGAPDFKHKSTGEALWLDPKDPPWVKKQLQRIDSMME 202
W NP +W DNR +K PDFKHK TGEALW+ P WV +L + E
Sbjct: 294 WKDLVQNPDKWLDNRSDKTNVKYPDFKHKETGEALWMT-NSPIWVLSKLPPLKKNQE 349
>sp|Q9FYJ2|OSB4_ARATH Protein OSB4, chloroplastic OS=Arabidopsis thaliana GN=OSB4 PE=2
SV=1
Length = 360
Score = 48.5 bits (114), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 40/146 (27%), Positives = 60/146 (41%), Gaps = 33/146 (22%)
Query: 64 GDMAQLCQKHLKPNDFIYVTGQL------------HSYSKVDKNGKLCLCYKVVVEDFNY 111
GD+A +LK ND +++TGQ+ ++ ++ K+ ++V+V D +Y
Sbjct: 127 GDLAHTANSYLKKNDRVHITGQILGDVIQSGANSDQAHVQLFKSFHGSFSHQVMVRDLHY 186
Query: 112 VR----------ECGQGLAFKKSVESKSRGGEAGMEKYENRFYLWHVYFANPYEWWDNRK 161
+ Q K S RG E G LW P EW D R+
Sbjct: 187 IEGSKAMPKVLPTLDQNEGVLKHSASVQRGREFGTN-------LWFDLVDKPNEWCDYRE 239
Query: 162 NK----LYPGAPDFKHKSTGEALWLD 183
K + P PDFK K +ALWL+
Sbjct: 240 MKQNGSVNPKHPDFKKKDGSQALWLN 265
Score = 48.5 bits (114), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 24/49 (48%), Positives = 29/49 (59%), Gaps = 1/49 (2%)
Query: 146 WHVYFANPYEWWDNRKNKLYPGAPDFKHKSTGEALWLDPKDPPWVKKQL 194
W N +WWDNR +K P +PDFKHK TG LWL P WV ++L
Sbjct: 296 WKDLVDNMNKWWDNRVDKRTPKSPDFKHKETGVGLWLS-DSPSWVLEKL 343
>sp|Q87LA3|SSB_VIBPA Single-stranded DNA-binding protein OS=Vibrio parahaemolyticus
serotype O3:K6 (strain RIMD 2210633) GN=ssb PE=3 SV=1
Length = 176
Score = 34.7 bits (78), Expect = 0.48, Method: Compositional matrix adjust.
Identities = 16/49 (32%), Positives = 29/49 (59%)
Query: 64 GDMAQLCQKHLKPNDFIYVTGQLHSYSKVDKNGKLCLCYKVVVEDFNYV 112
G +A++ ++L+ +YV GQL + D++G+ +VVV+ FN V
Sbjct: 62 GKLAEVAGEYLRKGSQVYVEGQLQTRKWQDQSGQDRYSTEVVVQGFNGV 110
>sp|Q8DCJ0|SSB_VIBVU Single-stranded DNA-binding protein OS=Vibrio vulnificus (strain
CMCP6) GN=ssb PE=3 SV=1
Length = 179
Score = 34.3 bits (77), Expect = 0.77, Method: Compositional matrix adjust.
Identities = 14/49 (28%), Positives = 29/49 (59%)
Query: 64 GDMAQLCQKHLKPNDFIYVTGQLHSYSKVDKNGKLCLCYKVVVEDFNYV 112
G +A++ ++L+ +Y+ GQL + D+NG+ +VVV+ +N +
Sbjct: 62 GKLAEVAGEYLRKGSQVYIEGQLQTRKWQDQNGQDRYSTEVVVQGYNGI 110
>sp|Q9KUW2|SSB_VIBCH Single-stranded DNA-binding protein OS=Vibrio cholerae serotype O1
(strain ATCC 39315 / El Tor Inaba N16961) GN=ssb PE=3
SV=1
Length = 177
Score = 32.0 bits (71), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 13/49 (26%), Positives = 29/49 (59%)
Query: 64 GDMAQLCQKHLKPNDFIYVTGQLHSYSKVDKNGKLCLCYKVVVEDFNYV 112
G +A++ ++L+ +Y+ GQL + D++G+ +VVV+ +N +
Sbjct: 62 GKLAEVAGEYLRKGSQVYIEGQLQTRKWQDQSGQDRYSTEVVVQGYNGI 110
>sp|O42933|PMT4_SCHPO Dolichyl-phosphate-mannose--protein mannosyltransferase 4
OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843)
GN=ogm4 PE=3 SV=1
Length = 778
Score = 30.4 bits (67), Expect = 8.8, Method: Compositional matrix adjust.
Identities = 23/67 (34%), Positives = 33/67 (49%), Gaps = 12/67 (17%)
Query: 159 NRKNKLYPGAPDFK--HKSTGEALWLDPKD-PPWVKKQLQRIDSMMEERGSRDLGSLSRV 215
+ + LY A FK HK T A+W DPK P W KQL E G++++ + S
Sbjct: 471 DPQRPLYTKASSFKLIHKLTHVAMWSDPKPLPDWAFKQL-------EINGAKNIQTGSIF 523
Query: 216 STWVYDE 222
W +D+
Sbjct: 524 --WTFDD 528
>sp|P59138|RR4_CYABU 30S ribosomal protein S4, chloroplastic OS=Cyathophorum bulbosum
GN=rps4 PE=3 SV=1
Length = 202
Score = 30.4 bits (67), Expect = 9.3, Method: Compositional matrix adjust.
Identities = 22/92 (23%), Positives = 42/92 (45%), Gaps = 1/92 (1%)
Query: 26 LLIKLENIELNECVTMLDILLLIIHHLQCLSSILLAVGGDMAQLCQKHLKPNDFIYVTGQ 85
+L++L + L+ + L + I Q ++ + V G + + KP DFI + Q
Sbjct: 83 VLLQLLEMRLDNVIFRLGMFPTIPGARQLVNHRHILVNGPIVDIPSYQCKPQDFITIKNQ 142
Query: 86 LHSYSKVDKNGKLCLCYKVVVE-DFNYVRECG 116
S + + KN + YK+ +NY+ + G
Sbjct: 143 QKSEAIISKNIEFYQKYKIPNHLTYNYLEKKG 174
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.321 0.138 0.434
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 87,771,096
Number of Sequences: 539616
Number of extensions: 3716391
Number of successful extensions: 6920
Number of sequences better than 100.0: 10
Number of HSP's better than 100.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 6902
Number of HSP's gapped (non-prelim): 15
length of query: 222
length of database: 191,569,459
effective HSP length: 113
effective length of query: 109
effective length of database: 130,592,851
effective search space: 14234620759
effective search space used: 14234620759
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 59 (27.3 bits)