Query 027559
Match_columns 222
No_of_seqs 166 out of 1086
Neff 4.5
Searched_HMMs 29240
Date Mon Mar 25 19:55:42 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/027559.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/027559hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3koj_A Uncharacterized protein 99.9 8.4E-22 2.9E-26 154.5 9.5 82 29-110 25-107 (108)
2 3vdy_A SSB, single-stranded DN 99.8 1E-20 3.4E-25 147.6 10.6 89 29-117 19-111 (116)
3 2vw9_A Single-stranded DNA bin 99.8 2.9E-20 9.9E-25 149.3 12.0 89 29-117 16-110 (134)
4 3ulp_A Single-strand binding p 99.8 3.6E-20 1.2E-24 146.3 11.0 89 29-117 20-122 (124)
5 3tqy_A Single-stranded DNA-bin 99.8 6.1E-20 2.1E-24 151.5 11.8 89 29-117 22-117 (158)
6 3ull_A DNA binding protein; DN 99.8 2.3E-20 7.9E-25 149.1 9.0 89 29-117 28-129 (132)
7 1z9f_A Single-strand binding p 99.8 6E-20 2E-24 151.2 9.6 90 29-118 30-125 (153)
8 1qvc_A Single stranded DNA bin 99.8 1.4E-19 4.8E-24 147.1 10.1 90 29-118 19-118 (145)
9 3lgj_A Single-stranded DNA-bin 99.8 1.4E-19 4.7E-24 151.3 9.8 91 29-119 37-139 (169)
10 4dam_A Single-stranded DNA-bin 99.8 5.3E-19 1.8E-23 141.7 10.6 82 29-112 29-118 (128)
11 3pgz_A Single-stranded DNA-bin 99.8 7E-19 2.4E-23 150.4 11.4 89 29-117 40-140 (193)
12 3afp_A Single-stranded DNA-bin 99.8 3.7E-19 1.3E-23 148.1 9.0 89 29-117 18-118 (168)
13 1eqq_A Single stranded DNA bin 99.8 2.9E-19 9.8E-24 150.3 5.7 89 29-117 20-118 (178)
14 4gs3_A Single-stranded DNA-bin 99.8 6.8E-19 2.3E-23 138.1 7.4 82 28-113 24-106 (107)
15 3k7u_C MP18 RNA editing comple 99.8 1.9E-18 6.5E-23 142.0 10.1 85 31-116 21-118 (148)
16 2fxq_A Single-strand binding p 99.7 7.5E-18 2.5E-22 147.7 10.4 88 29-117 142-232 (264)
17 1txy_A Primosomal replication 99.7 5.4E-18 1.8E-22 130.5 8.1 81 29-115 16-103 (104)
18 3eiv_A Single-stranded DNA-bin 99.7 8.3E-18 2.8E-22 144.3 9.7 84 29-112 18-109 (199)
19 1v1q_A Primosomal replication 99.7 1.4E-17 5E-22 135.0 9.4 85 28-116 32-121 (134)
20 1se8_A Single-strand binding p 99.7 3.6E-17 1.2E-21 147.1 11.2 89 29-117 19-114 (301)
21 2fxq_A Single-strand binding p 99.7 3.4E-17 1.2E-21 143.5 9.6 87 29-116 19-111 (264)
22 3k81_C MP18 RNA editing comple 99.7 3.8E-17 1.3E-21 136.7 7.6 84 30-115 37-133 (164)
23 1se8_A Single-strand binding p 99.7 1.2E-16 4.1E-21 143.6 10.5 88 29-117 143-236 (301)
24 3fhw_A Primosomal replication 99.6 1.2E-15 4.2E-20 120.8 10.0 82 29-117 15-101 (115)
25 4dni_A Fusion protein of RNA-e 99.6 1.4E-15 4.8E-20 134.8 10.5 83 29-113 159-255 (257)
26 3k8a_A Putative primosomal rep 99.5 5.6E-14 1.9E-18 108.9 9.8 77 29-113 21-102 (103)
27 3stb_C RNA-editing complex pro 99.4 5.9E-13 2E-17 109.8 9.5 74 31-105 59-136 (148)
28 4dni_A Fusion protein of RNA-e 99.4 3.1E-13 1.1E-17 119.8 8.1 83 29-114 43-129 (257)
29 3en2_A Probable primosomal rep 99.3 8.1E-12 2.8E-16 96.9 7.8 65 29-94 16-85 (101)
30 4dka_C RNA-editing complex pro 96.4 0.011 3.9E-07 46.1 7.3 70 28-99 10-85 (105)
31 2k50_A Replication factor A re 87.6 0.49 1.7E-05 35.4 3.7 34 57-91 55-88 (115)
32 3dm3_A Replication factor A; p 86.9 0.49 1.7E-05 35.8 3.4 47 57-114 53-99 (105)
33 3e0e_A Replication protein A; 86.2 0.55 1.9E-05 34.8 3.3 47 55-113 48-94 (97)
34 1ynx_A Replication factor-A pr 81.7 1.1 3.7E-05 33.9 3.3 29 57-85 52-80 (114)
35 2hql_A Hypothetical protein Mg 79.6 8.5 0.00029 29.5 7.6 51 52-103 42-92 (110)
36 2vl6_A SSO MCM N-TER, minichro 79.3 5.6 0.00019 34.0 7.4 54 56-113 211-266 (268)
37 4hik_A Protection of telomeres 72.6 2.9 9.9E-05 33.7 3.5 27 57-83 66-92 (143)
38 1o7i_A SSB, SSO2364, single st 71.9 4 0.00014 30.9 4.0 29 57-89 50-79 (119)
39 4gop_B Putative uncharacterize 67.1 11 0.00038 29.0 5.7 49 57-114 65-116 (136)
40 1eov_A ASPRS, aspartyl-tRNA sy 66.1 27 0.00091 32.8 9.1 58 57-115 66-130 (487)
41 3kdf_D Replication protein A 3 62.2 16 0.00054 27.9 5.7 49 57-114 61-111 (132)
42 1jmc_A Protein (replication pr 60.7 7.3 0.00025 32.3 3.8 28 57-84 56-83 (246)
43 1ltl_A DNA replication initiat 58.5 14 0.00048 31.8 5.4 51 56-113 198-248 (279)
44 2k75_A Uncharacterized protein 53.8 11 0.00037 28.1 3.4 25 57-88 50-75 (106)
45 2pi2_A Replication protein A 3 53.4 37 0.0013 29.1 7.2 50 57-115 101-152 (270)
46 1c0a_A Aspartyl tRNA synthetas 51.6 52 0.0018 31.6 8.6 55 57-115 44-105 (585)
47 3bju_A Lysyl-tRNA synthetase; 51.4 45 0.0015 31.7 8.0 52 56-115 84-141 (521)
48 3au7_A TIAS, putative uncharac 51.3 32 0.0011 32.0 6.8 47 55-114 313-361 (402)
49 3a74_A Lysyl-tRNA synthetase; 48.3 56 0.0019 30.8 8.0 51 57-115 85-139 (493)
50 3kf6_A Protein STN1; OB fold, 47.4 1.1E+02 0.0037 24.6 9.0 53 54-115 74-129 (159)
51 3nem_A Aspartyl-tRNA synthetas 44.6 78 0.0027 29.3 8.3 53 57-115 45-101 (438)
52 4ex5_A Lysine--tRNA ligase; st 43.7 75 0.0025 30.4 8.2 51 57-115 115-169 (529)
53 1l0w_A Aspartyl-tRNA synthetas 42.9 27 0.00093 33.6 5.1 55 57-115 45-103 (580)
54 4gop_C Putative uncharacterize 40.6 18 0.00063 32.9 3.4 29 57-85 51-79 (444)
55 1e1o_A Lysyl-tRNA synthetase, 40.2 70 0.0024 30.2 7.3 51 57-115 93-148 (504)
56 3m4p_A Ehasnrs, asparaginyl-tR 39.6 55 0.0019 30.5 6.5 60 57-116 60-123 (456)
57 2hpi_A DNA polymerase III alph 39.3 19 0.00065 38.0 3.5 48 57-114 1076-1123(1220)
58 1x54_A Asparaginyl-tRNA synthe 39.3 90 0.0031 28.7 7.8 53 57-115 45-101 (434)
59 1jmc_A Protein (replication pr 38.4 20 0.00069 29.6 3.0 27 57-85 179-205 (246)
60 1wyd_A Hypothetical aspartyl-t 38.0 72 0.0024 29.4 6.9 52 57-115 45-98 (429)
61 1n9w_A Aspartyl-tRNA synthetas 36.5 87 0.003 28.7 7.2 45 58-115 43-88 (422)
62 3i7f_A Aspartyl-tRNA synthetas 34.5 78 0.0027 30.5 6.7 57 57-115 91-153 (548)
63 1wjj_A Hypothetical protein F2 34.4 37 0.0012 27.2 3.8 29 54-86 71-99 (145)
64 4ah6_A Aspartate--tRNA ligase, 34.1 54 0.0018 32.0 5.6 56 57-116 50-114 (617)
65 2xgt_A Asparaginyl-tRNA synthe 31.9 1.2E+02 0.004 27.9 7.3 54 57-114 41-96 (435)
66 2kbn_A Conserved protein; nucl 31.1 38 0.0013 25.2 3.2 31 56-89 46-77 (109)
67 4hsp_A Hypothetical protein; P 27.3 61 0.0021 26.3 4.0 33 78-112 113-145 (150)
68 1j3a_A 50S ribosomal protein L 24.0 32 0.0011 27.5 1.7 20 64-83 12-31 (142)
69 1vq8_J 50S ribosomal protein L 23.9 32 0.0011 27.7 1.7 20 64-83 20-39 (145)
70 4gop_C Putative uncharacterize 23.9 30 0.001 31.5 1.8 30 56-85 173-204 (444)
71 3mal_A Stromal cell-derived fa 22.2 13 0.00044 31.1 -1.0 29 169-197 144-173 (199)
72 1t9f_A Protein 1D10; structura 21.8 13 0.00045 30.5 -1.0 28 170-197 133-161 (187)
73 1xjv_A Protection of telomeres 21.4 98 0.0034 26.6 4.5 27 57-84 212-238 (294)
No 1
>3koj_A Uncharacterized protein YCF41; single-strand binding protein family, PF00436, SNR59A, NESG, structural genomics, PSI-2; 1.90A {Synechococcus elongatus pcc 6301}
Probab=99.86 E-value=8.4e-22 Score=154.48 Aligned_cols=82 Identities=17% Similarity=0.134 Sum_probs=64.9
Q ss_pred eeeeeecc-ceEEeeeeeccceeeceeeeeEEEEEechhHHHHHhhcCCCCeEEEEEEeeeccccCCCCceEEEEEEEEe
Q 027559 29 KLENIELN-ECVTMLDILLLIIHHLQCLSSILLAVGGDMAQLCQKHLKPNDFIYVTGQLHSYSKVDKNGKLCLCYKVVVE 107 (222)
Q Consensus 29 ~~~~~~~~-e~vt~~~iav~~r~~~~~t~wI~Vv~WGklAE~~aqyLkKGD~V~VsGrL~sr~~~dkdGq~rs~~eVvV~ 107 (222)
.+++.+.+ .+++.|+||++......+++||+|++||++||.|++||+|||+|+|+|+|++++|++++|++++.+||+|+
T Consensus 25 elR~t~~g~~~va~f~lAv~~~~~~~~t~fi~vv~wgk~AE~~~~yl~KG~~V~VeGrL~~r~y~~kdG~kr~~tEVva~ 104 (108)
T 3koj_A 25 QLRYAQDNQTPVAEMVVQFPGLSSKDAPARLKVVGWGAVAQELQDRCRLNDEVVLEGRLRINSLLKPDGNREKQTELTVT 104 (108)
T ss_dssp EEEECTTSSSEEEEEEEEECC-----CCEEEEEEEETHHHHHHHHHCCTTCEEEEEEEEEEEC--------CCEEEEEEE
T ss_pred EEEEeCCCCEEEEEEEEEECCcccCCCcEEEEEEEEhHHHHHHHHhCCCCCEEEEEEEEEeeeEECCCCCEEEEEEEEEE
Confidence 46788877 89999999999655566899999999999999999999999999999999999999999999999999999
Q ss_pred eEE
Q 027559 108 DFN 110 (222)
Q Consensus 108 el~ 110 (222)
+|.
T Consensus 105 ~i~ 107 (108)
T 3koj_A 105 RVH 107 (108)
T ss_dssp EEE
T ss_pred EEE
Confidence 874
No 2
>3vdy_A SSB, single-stranded DNA-binding protein SSBB; OB fold; 2.80A {Bacillus subtilis}
Probab=99.84 E-value=1e-20 Score=147.58 Aligned_cols=89 Identities=9% Similarity=0.066 Sum_probs=74.4
Q ss_pred eeeeeeccceEEeeeeecccee----eceeeeeEEEEEechhHHHHHhhcCCCCeEEEEEEeeeccccCCCCceEEEEEE
Q 027559 29 KLENIELNECVTMLDILLLIIH----HLQCLSSILLAVGGDMAQLCQKHLKPNDFIYVTGQLHSYSKVDKNGKLCLCYKV 104 (222)
Q Consensus 29 ~~~~~~~~e~vt~~~iav~~r~----~~~~t~wI~Vv~WGklAE~~aqyLkKGD~V~VsGrL~sr~~~dkdGq~rs~~eV 104 (222)
.+++.+.+..++.|+||+.++. ....++||+|++||++||.+++||+||++|+|+|+|++++|+|++|++++.++|
T Consensus 19 e~r~t~~G~~v~~f~la~~~~~~~~~g~~~t~~~~v~~wg~~Ae~~~~~l~KG~~V~V~G~l~~~~~~d~dG~~~~~~ev 98 (116)
T 3vdy_A 19 DLRYTSAGAAVAHVTLAVNRSFKNASGEIEADYVNCTLWRKTAENTALYCQKGSLVGVSGRIQTRSYENEEGVNVYVTEV 98 (116)
T ss_dssp EEEECTTSCEEEEEEEEEECSSCCSSSCCCEEEEEEEEEHHHHHHHHHHCCTTCEEEEEEEEEEEEEC----CCEEEEEE
T ss_pred EEEECCCCCEEEEEEEEEeccccCCCCccccEEEEEEEECHHHHHHHHhCCCCCEEEEEEEEEeeEEECCCCCEEEEEEE
Confidence 4577888899999999998752 234899999999999999999999999999999999999999999999999999
Q ss_pred EEeeEEeeecCCC
Q 027559 105 VVEDFNYVRECGQ 117 (222)
Q Consensus 105 vV~el~Fv~~k~~ 117 (222)
+|++|+||++++.
T Consensus 99 ~a~~i~~l~~~~~ 111 (116)
T 3vdy_A 99 LADTVRFMDPKPR 111 (116)
T ss_dssp EEEEEEECC----
T ss_pred EEEEEEEccCCCc
Confidence 9999999987653
No 3
>2vw9_A Single-stranded DNA binding protein; DNA replication, single-stranded DNA, single-stranded DNA binding protein, oligonucleotide/oligosaccharide binding fold, OB-fold; 2.30A {Helicobacter pylori}
Probab=99.83 E-value=2.9e-20 Score=149.34 Aligned_cols=89 Identities=12% Similarity=0.156 Sum_probs=79.5
Q ss_pred eeeeeeccceEEeeeeeccceee------ceeeeeEEEEEechhHHHHHhhcCCCCeEEEEEEeeeccccCCCCceEEEE
Q 027559 29 KLENIELNECVTMLDILLLIIHH------LQCLSSILLAVGGDMAQLCQKHLKPNDFIYVTGQLHSYSKVDKNGKLCLCY 102 (222)
Q Consensus 29 ~~~~~~~~e~vt~~~iav~~r~~------~~~t~wI~Vv~WGklAE~~aqyLkKGD~V~VsGrL~sr~~~dkdGq~rs~~ 102 (222)
.+++.+.+.+++.|+||+.++.. .+.++||+|++||++||.|++||+||++|+|+|+|++++|+|++|++++.+
T Consensus 16 elr~t~~G~~v~~f~lA~~~~~~~~~G~~~~~t~~~~v~~wg~~Ae~~~~~l~KG~~V~V~G~L~~~~~~dkdG~~r~~~ 95 (134)
T 2vw9_A 16 ELKYLPSGSAAATIGLATSRRFKKQDGTLGEEVCFIDARLFGRTAEIANQYLSKGSSVLIEGRLTYESWMDQTGKKNSRH 95 (134)
T ss_dssp EEEECTTSCEEEEEEEEEEEEEECSSSCEEEEEEEEEEEEEHHHHHHHHHHCCTTCEEEEEEEEEEEEEECTTSCEEEEE
T ss_pred EEEECCCCCEEEEEEEEEeCCeECCCCCCccccEEEEEEEEcHHHHHHHHhCCCCCEEEEEEEEEeeeEECCCCCEEEEE
Confidence 35788888999999999997531 227999999999999999999999999999999999999999999999999
Q ss_pred EEEEeeEEeeecCCC
Q 027559 103 KVVVEDFNYVRECGQ 117 (222)
Q Consensus 103 eVvV~el~Fv~~k~~ 117 (222)
+|+|++|+|++++..
T Consensus 96 ev~a~~i~~l~~~~~ 110 (134)
T 2vw9_A 96 TITADSLQFMDKKSD 110 (134)
T ss_dssp EEEEEEEEECCCC--
T ss_pred EEEEEEEEEccCCcc
Confidence 999999999987643
No 4
>3ulp_A Single-strand binding protein; OB-fold, DNA binding, single-stranded DNA, apicoplast, DNA B protein-DNA complex; HET: DNA; 2.10A {Plasmodium falciparum}
Probab=99.82 E-value=3.6e-20 Score=146.32 Aligned_cols=89 Identities=13% Similarity=0.178 Sum_probs=76.0
Q ss_pred eeeeeeccceEEeeeeeccceee-------ceeeeeEEEEEec-hhHHHHHhhcCCCCeEEEEEEeeeccccCC--CCce
Q 027559 29 KLENIELNECVTMLDILLLIIHH-------LQCLSSILLAVGG-DMAQLCQKHLKPNDFIYVTGQLHSYSKVDK--NGKL 98 (222)
Q Consensus 29 ~~~~~~~~e~vt~~~iav~~r~~-------~~~t~wI~Vv~WG-klAE~~aqyLkKGD~V~VsGrL~sr~~~dk--dGq~ 98 (222)
.+++.+.+.+++.|+||+.++.. .+.++||+|++|| ++||.|++||+||++|+|+|+|++++|+|+ +|++
T Consensus 20 elr~t~~G~~v~~f~lA~~~~~~~~~~G~~~~~t~~~~v~~wg~~~Ae~~~~~l~KG~~V~V~G~L~~~~~~d~~~dG~~ 99 (124)
T 3ulp_A 20 DIKILNGGDKVATFSLATNEFWRDRNTNELKSKTDWHRIVVYDQNIVDLIDKYLRKGRRVYVQGSLHTRKWHTNDMNSQP 99 (124)
T ss_dssp EEEECTTSCEEEEEEEEEEEEEECTTTCCEEEEEEEEEEEECCHHHHHHHHHHCCTTCEEEEEEEEEEEEECC----CCC
T ss_pred EEEECCCCCEEEEEEEEEccceecccCCcEecccEEEEEEEEEchHHHHHHhhcCCCCEEEEEEEEEeEEEeCCCCCCCE
Confidence 35778888999999999988632 2389999999999 999999999999999999999999999999 9999
Q ss_pred EEEEEEEEe----eEEeeecCCC
Q 027559 99 CLCYKVVVE----DFNYVRECGQ 117 (222)
Q Consensus 99 rs~~eVvV~----el~Fv~~k~~ 117 (222)
++.++|+|+ +|+||++++.
T Consensus 100 ~~~~ev~a~~~g~~i~~l~~k~~ 122 (124)
T 3ulp_A 100 KQITEIILSYNKGDLIFLDDKRN 122 (124)
T ss_dssp EEEEEEEECTTTCEEEECC----
T ss_pred EEEEEEEEEcCCCcEEEecCcCC
Confidence 999999998 9999998753
No 5
>3tqy_A Single-stranded DNA-binding protein; DNA replication, transferase; 2.60A {Coxiella burnetii}
Probab=99.82 E-value=6.1e-20 Score=151.54 Aligned_cols=89 Identities=15% Similarity=0.178 Sum_probs=78.1
Q ss_pred eeeeeeccceEEeeeeeccceeec-------eeeeeEEEEEechhHHHHHhhcCCCCeEEEEEEeeeccccCCCCceEEE
Q 027559 29 KLENIELNECVTMLDILLLIIHHL-------QCLSSILLAVGGDMAQLCQKHLKPNDFIYVTGQLHSYSKVDKNGKLCLC 101 (222)
Q Consensus 29 ~~~~~~~~e~vt~~~iav~~r~~~-------~~t~wI~Vv~WGklAE~~aqyLkKGD~V~VsGrL~sr~~~dkdGq~rs~ 101 (222)
.+++.+.+.+++.|+||+.++... +.++||+|++||++||.|++||+||++|+|+|+|++++|+|++|++++.
T Consensus 22 elr~t~~G~~v~~f~lA~~~~~~d~~~Ge~~e~t~~i~vv~wg~~Ae~~~~~l~KG~~V~VeG~L~~~~~~dkdG~~r~~ 101 (158)
T 3tqy_A 22 EVRYTPNGNAVANVTLATSTTWRDKQTGELQERTEWHRIAFFNRLAEIVGEYLRKGSKIYIEGSLRTRKWQDKNGVDRYT 101 (158)
T ss_dssp EEEECTTCCEEEEEEEEEEEEEECTTTCCEEEEEEEEEEEEETHHHHHHHHHCCTTCEEEEEEEEEEEEEECSSSCEEEE
T ss_pred EEEECCCCCEEEEEEEEEcCceeccCCCCEeeeeEEEEEEEEhHHHHHHHhhcCCCCEEEEEEEEEeeeEECCCCCEEEE
Confidence 367888889999999999875321 2699999999999999999999999999999999999999999999999
Q ss_pred EEEEEeeEEeeecCCC
Q 027559 102 YKVVVEDFNYVRECGQ 117 (222)
Q Consensus 102 ~eVvV~el~Fv~~k~~ 117 (222)
++|+|++|+||++++.
T Consensus 102 ~eV~a~~i~~L~~k~~ 117 (158)
T 3tqy_A 102 TEIIANEMHMLDNRGG 117 (158)
T ss_dssp EEEEEEEEEECC----
T ss_pred EEEEEeEEEEccCCcc
Confidence 9999999999998754
No 6
>3ull_A DNA binding protein; DNA replication, mitochondrion, transit peptide; HET: DNA; 2.40A {Homo sapiens} SCOP: b.40.4.3 PDB: 1s3o_A* 2dud_A
Probab=99.82 E-value=2.3e-20 Score=149.06 Aligned_cols=89 Identities=15% Similarity=0.179 Sum_probs=77.2
Q ss_pred eeeeeeccceEEeeeeeccceee------------ceeeeeEEEEEec-hhHHHHHhhcCCCCeEEEEEEeeeccccCCC
Q 027559 29 KLENIELNECVTMLDILLLIIHH------------LQCLSSILLAVGG-DMAQLCQKHLKPNDFIYVTGQLHSYSKVDKN 95 (222)
Q Consensus 29 ~~~~~~~~e~vt~~~iav~~r~~------------~~~t~wI~Vv~WG-klAE~~aqyLkKGD~V~VsGrL~sr~~~dkd 95 (222)
.+++.+.+.+++.|+||++++.. ...++||+|++|| ++||.|++||+||++|+|+|+|++++|+|++
T Consensus 28 elr~t~~G~~v~~f~lA~~~~~~~~~g~~~~~g~~~~~t~w~~v~~wg~~~Ae~~~~~l~KG~~V~V~G~L~~~~~~d~d 107 (132)
T 3ull_A 28 VLRQVEGKNPVTIFSLATNEMWRSGDSEVYQLGDVSQKTTWHRISVFRPGLRDVAYQYVKKGSRIYLEGKIDYGEYMDKN 107 (132)
T ss_dssp EEECCTTSCCEEEEEEEEEEEECC---------CCEEEEEEEEEEECSTTHHHHHHHHCCTTCEEEEEEEEECCCEESSS
T ss_pred EEEECCCCCEEEEEEEEEecceeccccccccCCceecceEEEEEEEEchHHHHHHHhhCCCCCEEEEEEEEEeeEEECCC
Confidence 35778888999999999998632 2589999999999 5999999999999999999999999999999
Q ss_pred CceEEEEEEEEeeEEeeecCCC
Q 027559 96 GKLCLCYKVVVEDFNYVRECGQ 117 (222)
Q Consensus 96 Gq~rs~~eVvV~el~Fv~~k~~ 117 (222)
|++++.++|+|++|+||+++++
T Consensus 108 G~~r~~~ev~a~~i~~l~~~~k 129 (132)
T 3ull_A 108 NVRRQATTIIADNIIFLSDQTK 129 (132)
T ss_dssp SEECCCEEEEEEEEECC-----
T ss_pred CCEEEEEEEEEEEEEEccCCCc
Confidence 9999999999999999987643
No 7
>1z9f_A Single-strand binding protein; TM0604, single stranded DNA-binding protein, structural GENO joint center for structural genomics, JCSG; 2.30A {Thermotoga maritima}
Probab=99.81 E-value=6e-20 Score=151.16 Aligned_cols=90 Identities=12% Similarity=0.081 Sum_probs=67.6
Q ss_pred eeeeeeccceEEeeeeeccc-ee----ece-eeeeEEEEEechhHHHHHhhcCCCCeEEEEEEeeeccccCCCCceEEEE
Q 027559 29 KLENIELNECVTMLDILLLI-IH----HLQ-CLSSILLAVGGDMAQLCQKHLKPNDFIYVTGQLHSYSKVDKNGKLCLCY 102 (222)
Q Consensus 29 ~~~~~~~~e~vt~~~iav~~-r~----~~~-~t~wI~Vv~WGklAE~~aqyLkKGD~V~VsGrL~sr~~~dkdGq~rs~~ 102 (222)
.+++.+.+..++.|+||+++ +. ... +++||+|++||++||.|++||+||++|+|+|+|++++|+|++|++++.+
T Consensus 30 elr~t~~G~~va~f~lAv~~r~~~~~~Ge~~~t~~~~v~~wg~~Ae~~~~~l~KG~~V~VeGrL~~~~~~dkdG~~r~~~ 109 (153)
T 1z9f_A 30 EERYTLSGTPVTTFTIAVDRVPRKNAPDDAQTTDFFRIVTFGRLAEFARTYLTKGRLVLVEGEMRMRRWETPTGEKRVSP 109 (153)
T ss_dssp EEEECC--CEEEEEEEEEEC-----------CEEEEEEEEEHHHHHHHHHHCCTTCEEEEEEEEEEEC-------CCCEE
T ss_pred EEEECCCCCEEEEEEEEEcCCccccCCCCEeeeEEEEEEEECHHHHHHHhhCCCCCEEEEEEEEEeceEECCCCCEEEEE
Confidence 36788888999999999998 42 112 2999999999999999999999999999999999999999999999999
Q ss_pred EEEEeeEEeeecCCCC
Q 027559 103 KVVVEDFNYVRECGQG 118 (222)
Q Consensus 103 eVvV~el~Fv~~k~~~ 118 (222)
+|+|++|+||+++++.
T Consensus 110 eV~a~~i~~l~~~~~~ 125 (153)
T 1z9f_A 110 EVVANVVRFMDRKPAE 125 (153)
T ss_dssp EEEEEEEEECC-----
T ss_pred EEEEEEEEEccCCCcc
Confidence 9999999999876543
No 8
>1qvc_A Single stranded DNA binding protein monomer; beta-barrel; 2.20A {Escherichia coli} SCOP: b.40.4.3 PDB: 1kaw_A 1eyg_A 1sru_A
Probab=99.80 E-value=1.4e-19 Score=147.06 Aligned_cols=90 Identities=14% Similarity=0.169 Sum_probs=80.5
Q ss_pred eeeeeeccceEEeeeeeccceee-------ceeeeeEEEEEechhHHHHHhhcCCCCeEEEEEEeeeccccCCCCceEEE
Q 027559 29 KLENIELNECVTMLDILLLIIHH-------LQCLSSILLAVGGDMAQLCQKHLKPNDFIYVTGQLHSYSKVDKNGKLCLC 101 (222)
Q Consensus 29 ~~~~~~~~e~vt~~~iav~~r~~-------~~~t~wI~Vv~WGklAE~~aqyLkKGD~V~VsGrL~sr~~~dkdGq~rs~ 101 (222)
.+++++.+.+++.|+||+.++.. .+.++||+|++|+++||.|++||+||++|+|+|+|++++|+|++|++++.
T Consensus 19 elr~t~~G~~v~~f~lA~~~~~~~~~~Ge~~~~t~~~~v~~wg~~Ae~~~~~l~KG~~V~V~G~L~~~~~~d~dG~~r~~ 98 (145)
T 1qvc_A 19 EVRYMPNGGAVANITLATSESWRDKATGEMKEQTEWHRVVLFGKLAEVASEYLRKGSQVYIEGQLRTRKWTDQSGQDRYT 98 (145)
T ss_dssp EEECCSSSCCEEEEEEEECCCCSCCSSSSCCCCCEEEEEEEETHHHHHHHHHCCTTCEEEEEEEEEEEEECSSSSCEEEE
T ss_pred EEEECCCCCEEEEEEEEEcCCcccccCCcEecccEEEEEEEehHHHHHHHHhcCCCCEEEEEEEEEeeEEECCCCcEEEE
Confidence 35778888999999999988521 13699999999999999999999999999999999999999999999999
Q ss_pred EEE---EEeeEEeeecCCCC
Q 027559 102 YKV---VVEDFNYVRECGQG 118 (222)
Q Consensus 102 ~eV---vV~el~Fv~~k~~~ 118 (222)
++| +|++|+||++++..
T Consensus 99 ~ei~a~va~~i~~l~~~~~~ 118 (145)
T 1qvc_A 99 TEVVVNVGGTMQMLGGRQGG 118 (145)
T ss_dssp EEEECTTCEEEECCCCSCCC
T ss_pred EEEeeeEeCEEEEccCCCcC
Confidence 999 99999999876543
No 9
>3lgj_A Single-stranded DNA-binding protein; niaid, CAT scratch fever, rochalimaea, LYME disease, ALS collaborative crystallography, DNA replication; 2.50A {Bartonella henselae}
Probab=99.80 E-value=1.4e-19 Score=151.27 Aligned_cols=91 Identities=13% Similarity=0.143 Sum_probs=68.8
Q ss_pred eeeeeeccceEEeeeeeccceee-------ceeeeeEEEEEech-hHHHHHhhcCCCCeEEEEEEeeeccccCCCCceEE
Q 027559 29 KLENIELNECVTMLDILLLIIHH-------LQCLSSILLAVGGD-MAQLCQKHLKPNDFIYVTGQLHSYSKVDKNGKLCL 100 (222)
Q Consensus 29 ~~~~~~~~e~vt~~~iav~~r~~-------~~~t~wI~Vv~WGk-lAE~~aqyLkKGD~V~VsGrL~sr~~~dkdGq~rs 100 (222)
.+++.+.+.+++.|+||++++.. .+.++||+|++||+ +||.|++||+||++|+|+|+|++++|+|++|+++|
T Consensus 37 elr~t~~G~~v~~FslAv~~~~~~~~~Ge~~~~t~~i~vv~wg~~lAe~~~~~l~KG~~V~VeGrL~~r~~~dkdG~~r~ 116 (169)
T 3lgj_A 37 ESKTMTSGAEVVNFRMATFESYMNKNTHQKVEKTEWHSVVVFNPHFAKIALQYLHKGSKVYIEGKLQTRKWQDKNGHDRY 116 (169)
T ss_dssp EEEECTTSCEEEEEEEEEEC------------CEEEEEEEECCHHHHHHHHHHCCTTCEEEEEEEEEEECC--------C
T ss_pred eEEECCCCCEEEEEEEEEcCceecccCCccccccEEEEEEEeCHHHHHHHHHhCCCCCEEEEEEEEEEEEEECCCCCEEE
Confidence 35788888999999999988521 13799999999999 99999999999999999999999999999999999
Q ss_pred EEEEEE----eeEEeeecCCCCc
Q 027559 101 CYKVVV----EDFNYVRECGQGL 119 (222)
Q Consensus 101 ~~eVvV----~el~Fv~~k~~~~ 119 (222)
.++|+| ++|+||++++...
T Consensus 117 ~~eIva~~~~~~i~~L~~k~~~~ 139 (169)
T 3lgj_A 117 TTEIVLPQYKGELHLLDAKKEQS 139 (169)
T ss_dssp EEEEEECTTCCEEEEECC-----
T ss_pred EEEEEEEeccCcEEEccCCCccc
Confidence 999998 5899999876544
No 10
>4dam_A Single-stranded DNA-binding protein 1; OB-fold; 1.70A {Streptomyces coelicolor}
Probab=99.79 E-value=5.3e-19 Score=141.69 Aligned_cols=82 Identities=9% Similarity=0.009 Sum_probs=73.7
Q ss_pred eeeeeeccceEEeeeeeccceee--------ceeeeeEEEEEechhHHHHHhhcCCCCeEEEEEEeeeccccCCCCceEE
Q 027559 29 KLENIELNECVTMLDILLLIIHH--------LQCLSSILLAVGGDMAQLCQKHLKPNDFIYVTGQLHSYSKVDKNGKLCL 100 (222)
Q Consensus 29 ~~~~~~~~e~vt~~~iav~~r~~--------~~~t~wI~Vv~WGklAE~~aqyLkKGD~V~VsGrL~sr~~~dkdGq~rs 100 (222)
.+++.+.+ +++.|+||++++.. +.+++||+|++||++||.|++||+||++|+|+|+|++++| |+||++++
T Consensus 29 elr~t~~G-~v~~fslAv~~~~~d~~~Ge~~d~~t~w~~v~~wg~~Ae~~~~~l~KG~~V~VeGrL~~~~~-dkdG~~r~ 106 (128)
T 4dam_A 29 VFRDLANG-PSVRFRLAVTARYWDREKNAWTDGHTNFFTVWANRQLATNASGSLAVGDPVVVQGRLKVRTD-VREGQSRT 106 (128)
T ss_dssp EEEEETTE-EEEEEEEEEEEEEEETTTTEEEEEEEEEEEEEEEHHHHHHHHHHCCTTCEEEEEEEEEEEEE-EETTEEEE
T ss_pred EEEEcCCC-CEEEEEEEEcCceecccCCceecCCcEEEEEEEEcHHHHHHHHhcCCCCEEEEEEEEEEeEE-cCCCCEEE
Confidence 35778888 99999999997631 1389999999999999999999999999999999999999 99999999
Q ss_pred EEEEEEeeEEee
Q 027559 101 CYKVVVEDFNYV 112 (222)
Q Consensus 101 ~~eVvV~el~Fv 112 (222)
.++|+|++|..-
T Consensus 107 ~~ev~a~~vg~d 118 (128)
T 4dam_A 107 SADIDAVAIGHD 118 (128)
T ss_dssp EEEEEEEEEEEC
T ss_pred EEEEEEEEEEec
Confidence 999999998753
No 11
>3pgz_A Single-stranded DNA-binding protein; ssgcid, single-strand binding protein, structural genomics center for infectious disease; 2.10A {Bartonella henselae}
Probab=99.78 E-value=7e-19 Score=150.42 Aligned_cols=89 Identities=16% Similarity=0.221 Sum_probs=77.4
Q ss_pred eeeeeeccceEEeeeeeccceee-------ceeeeeEEEEEech-hHHHHHhhcCCCCeEEEEEEeeeccccCCCCceEE
Q 027559 29 KLENIELNECVTMLDILLLIIHH-------LQCLSSILLAVGGD-MAQLCQKHLKPNDFIYVTGQLHSYSKVDKNGKLCL 100 (222)
Q Consensus 29 ~~~~~~~~e~vt~~~iav~~r~~-------~~~t~wI~Vv~WGk-lAE~~aqyLkKGD~V~VsGrL~sr~~~dkdGq~rs 100 (222)
.+++++.+.+|+.|+||++++.. .+.++||+|++|++ +||.|++||+||++|+|+|+|++++|+|++|+++|
T Consensus 40 ElR~t~~G~~Va~FsLAvnr~~kd~~~Ge~~e~Tdwi~Vvawgk~lAe~~~~yL~KGs~V~VeGrL~trswedkdG~kr~ 119 (193)
T 3pgz_A 40 EIRRLNSGDQVANLRIATSESWRDRNTNERKERTEWHNIVIFNENLVKVVEQYLKKGSKIYIEGQLQTRKWQDQNGNDRY 119 (193)
T ss_dssp EEEECTTSCEEEEEEEEEEEEECCC-----EEEEEEEEEEECCHHHHHHHHHHCCTTCEEEEEEEEEEEEEECTTSCEEE
T ss_pred eEEECCCCCEEEEEEEEEcCceeccCCCceeeeeEEEEEEEECHHHHHHHHhhcCCCCEEEEEEEEEEEEeECCCCCEEE
Confidence 36788888999999999988531 23799999999996 99999999999999999999999999999999999
Q ss_pred EEEEEEe----eEEeeecCCC
Q 027559 101 CYKVVVE----DFNYVRECGQ 117 (222)
Q Consensus 101 ~~eVvV~----el~Fv~~k~~ 117 (222)
.++|+|+ +|+||++++.
T Consensus 120 ~tEVva~~~~~~i~fL~sk~~ 140 (193)
T 3pgz_A 120 TTEIVLQKYRGELQMLDGRAA 140 (193)
T ss_dssp EEEEEECTTCCEEEECC----
T ss_pred EEEEEEEeccCceEECcCCCC
Confidence 9999999 6899998754
No 12
>3afp_A Single-stranded DNA-binding protein; OB-fold, quaternary structure and stability, changes on oligomerisation, water-bridges, DNA damage; 2.05A {Mycobacterium leprae} PDB: 3afq_A 1ue1_A 1ue5_A 1ue6_A 1ue7_A 1x3e_A 1x3f_A 1x3g_A 3a5u_A*
Probab=99.78 E-value=3.7e-19 Score=148.12 Aligned_cols=89 Identities=15% Similarity=0.059 Sum_probs=76.3
Q ss_pred eeeeeeccceEEeeeeeccceee--------ceeeeeEEEEEechhHHHHHhhcCCCCeEEEEEEeeeccccCCCCceEE
Q 027559 29 KLENIELNECVTMLDILLLIIHH--------LQCLSSILLAVGGDMAQLCQKHLKPNDFIYVTGQLHSYSKVDKNGKLCL 100 (222)
Q Consensus 29 ~~~~~~~~e~vt~~~iav~~r~~--------~~~t~wI~Vv~WGklAE~~aqyLkKGD~V~VsGrL~sr~~~dkdGq~rs 100 (222)
.+++++.+.+++.|+||++++.. ..+++||+|++|+++||.|++||+||++|+|+|+|++++|+|++|++++
T Consensus 18 elr~t~~G~~va~f~lAv~~~~~~~~~Ge~~d~~t~~~~v~~wg~~Ae~~~~~l~KG~~V~VeGrL~~~~~~dkdG~~r~ 97 (168)
T 3afp_A 18 ELRFTSSGAAVVNFTVASTPRIYDRQSGEWKDGEALFLRCNIWREAAENVAESLTRGARVIVTGRLKQRSFETREGEKRT 97 (168)
T ss_dssp CCEECTTSCEEEEEEEEECC--------CCCCCCCEEEEEEEEHHHHHHHHHHCCTTCEEEEEEEEEEEEEC-CCSCCEE
T ss_pred EEEECCCCCEEEEEEEEEccccccccCCcEecCCcEEEEEEEehHHHHHHHHhCCCCCEEEEEEEEEeeeEECCCCcEEE
Confidence 35788888999999999976421 1269999999999999999999999999999999999999999999999
Q ss_pred EEEEEEe----eEEeeecCCC
Q 027559 101 CYKVVVE----DFNYVRECGQ 117 (222)
Q Consensus 101 ~~eVvV~----el~Fv~~k~~ 117 (222)
.++|+|+ +|+|+.++..
T Consensus 98 ~~ev~a~~v~~~l~~l~~~~~ 118 (168)
T 3afp_A 98 VVEVEVDEIGPSLRYATAKVN 118 (168)
T ss_dssp EEEEEEEEEEECCSSEEEEEE
T ss_pred EEEEEEEEeecCEEEeccccc
Confidence 9999877 7899986543
No 13
>1eqq_A Single stranded DNA binding protein; beta barrel, protein-DNA complex, replication/RNA complex; HET: 5MU; 3.20A {Escherichia coli} SCOP: b.40.4.3
Probab=99.76 E-value=2.9e-19 Score=150.30 Aligned_cols=89 Identities=13% Similarity=0.146 Sum_probs=78.3
Q ss_pred eeeeeeccceEEeeeeeccceee-------ceeeeeEEEEEechhHHHHHhhcCCCCeEEEEEEeeeccccCCCCceEEE
Q 027559 29 KLENIELNECVTMLDILLLIIHH-------LQCLSSILLAVGGDMAQLCQKHLKPNDFIYVTGQLHSYSKVDKNGKLCLC 101 (222)
Q Consensus 29 ~~~~~~~~e~vt~~~iav~~r~~-------~~~t~wI~Vv~WGklAE~~aqyLkKGD~V~VsGrL~sr~~~dkdGq~rs~ 101 (222)
.+++++.+.+++.|+||+.++.. .+.++||+|++||++||.|++||+||++|+|+|+|++++|+|++|++++.
T Consensus 20 elr~t~~G~~v~~f~LAv~~~~~d~~~Ge~~~~t~~i~vv~wg~~Ae~~~~~l~KG~~V~VeGrL~~r~~~dkdG~~r~~ 99 (178)
T 1eqq_A 20 EVRYMPNGGAVANITLATSESWRDKATGEMKEQTEWHRVVLFGKLAEVASEYLRKGSQVYIEGQLRTRKWTDQSGQDRYT 99 (178)
T ss_dssp CCCEETTTEECCCCEEEEEECCCCSSSSSCCCEEEEEEEEECHHHHHHHHHHCCTTCEEEECCEEEEEEEECSSSEEEEE
T ss_pred EEEECCCCCEEEEEEEEEcCCeecCCCCceecccEEEEEEEccHHHHHHHHhcCCCCEEEEEEEEEeeeEECCCCCEEEE
Confidence 35788888999999999987532 13699999999999999999999999999999999999999999999999
Q ss_pred EEE---EEeeEEeeecCCC
Q 027559 102 YKV---VVEDFNYVRECGQ 117 (222)
Q Consensus 102 ~eV---vV~el~Fv~~k~~ 117 (222)
++| +|++|+||+++..
T Consensus 100 ~eI~v~va~~i~~l~~~~~ 118 (178)
T 1eqq_A 100 TEVVVNVGGTMQMLGGRQG 118 (178)
T ss_dssp EEEECSSSCCEECSCC---
T ss_pred EEEeeeecCeEEEccccCC
Confidence 999 9999999987644
No 14
>4gs3_A Single-stranded DNA-binding protein; primosome, oligonucleotide/oligosaccharide binding domain, D binding protein; 1.09A {Thermoanaerobacter tengcongensis}
Probab=99.76 E-value=6.8e-19 Score=138.14 Aligned_cols=82 Identities=15% Similarity=0.141 Sum_probs=66.9
Q ss_pred eeeeeeeccceEEeeeeeccceeeceeeeeEEEEEechhHHHHHhhcCCCCeEEEEEEeee-ccccCCCCceEEEEEEEE
Q 027559 28 IKLENIELNECVTMLDILLLIIHHLQCLSSILLAVGGDMAQLCQKHLKPNDFIYVTGQLHS-YSKVDKNGKLCLCYKVVV 106 (222)
Q Consensus 28 ~~~~~~~~~e~vt~~~iav~~r~~~~~t~wI~Vv~WGklAE~~aqyLkKGD~V~VsGrL~s-r~~~dkdGq~rs~~eVvV 106 (222)
..+++.+.++.++.|+|||++.. .++|||+|++|+++||.|..| ||++|+|+|+|++ +.|++++|++|+.++|+|
T Consensus 24 pelr~t~~G~~v~~f~lAV~R~~--~~~Dfi~ivvw~klAe~~~~~--kG~~v~v~G~lrsy~~~~~~dG~~R~v~eV~a 99 (107)
T 4gs3_A 24 LEFSHELYGEKFFNFILEVPRLS--ETKDYLPITISNRLFEGMNLE--VGTRVKIEGQLRSYNRKSPEEGKNKLILTVFA 99 (107)
T ss_dssp CEEEEEETTEEEEEEEEEEECTT--SCEEEEEEEEEGGGSTTCCCC--TTCEEEEEEEEEEEECC--------EEEEEEE
T ss_pred ceEEEecCCcEEEEEEEEeCCCC--CCCcEEEEEEEhHHhhHHhhc--CCCEEEEEEEEEecceEECCCCCEEEEEEEEE
Confidence 34678889999999999999875 478999999999999999765 9999999999997 788999999999999999
Q ss_pred eeEEeee
Q 027559 107 EDFNYVR 113 (222)
Q Consensus 107 ~el~Fv~ 113 (222)
++|+||+
T Consensus 100 ~~i~fld 106 (107)
T 4gs3_A 100 RDISVVP 106 (107)
T ss_dssp EEEEEEC
T ss_pred EEEEEcc
Confidence 9999996
No 15
>3k7u_C MP18 RNA editing complex protein; OB-fold, RNA-editing proteins, kinetoplastids, system, RNA binding protein; 2.10A {Trypanosoma brucei} PDB: 3k80_D 3stb_D
Probab=99.76 E-value=1.9e-18 Score=142.03 Aligned_cols=85 Identities=9% Similarity=0.165 Sum_probs=69.6
Q ss_pred eeeeccceEEeeeeeccceee-------ceeeeeEEEEEechh-HHHHHhhcCCCCeEEEEEEeeeccccCCCCceEEEE
Q 027559 31 ENIELNECVTMLDILLLIIHH-------LQCLSSILLAVGGDM-AQLCQKHLKPNDFIYVTGQLHSYSKVDKNGKLCLCY 102 (222)
Q Consensus 31 ~~~~~~e~vt~~~iav~~r~~-------~~~t~wI~Vv~WGkl-AE~~aqyLkKGD~V~VsGrL~sr~~~dkdGq~rs~~ 102 (222)
++. .+.+++.|+||++++.. .+.++||+|++||++ ||.|++||+||++|+|+|+|++++|+|++|+++|.+
T Consensus 21 r~t-~G~~va~FslAv~~~~~~~~Ge~~~~~t~w~~vv~wgk~lAe~~~~yl~KG~~V~VeGrL~~r~~~dkdG~kr~~t 99 (148)
T 3k7u_C 21 GFV-YEDAVTQFTLTTTSIDTTHPTQEVVVEKDHHTIRCFGELFSAEVKQKVKEGNVVCVNGRLRLSPQLEPSCNKHFYF 99 (148)
T ss_dssp EES-SSSEEEEEEEEEECC-----------CEEEEEEEEESHHHHHHHHHHCCTTCEEEEEEEEEECCCSCCC-----CC
T ss_pred eee-CCcEEEEEEEEECCceecCCCCEEccccEEEEEEEECcHHHHHHHhhCCCCCEEEEEEEEEeeeeECCCCCEEEEE
Confidence 566 78899999999997531 268999999999997 999999999999999999999999999999999999
Q ss_pred EEEEe-----eEEeeecCC
Q 027559 103 KVVVE-----DFNYVRECG 116 (222)
Q Consensus 103 eVvV~-----el~Fv~~k~ 116 (222)
+|++- .+.+|.++.
T Consensus 100 eVi~v~~~~g~~~ll~~~r 118 (148)
T 3k7u_C 100 PYIQVQPPHGQVAVIHGDR 118 (148)
T ss_dssp EEEEECTTTCEEEEEECCC
T ss_pred EEEEEecCCCeEEEccCCC
Confidence 99875 599998653
No 16
>2fxq_A Single-strand binding protein; strand beta-sheet extended loops, DNA binding protein; 1.85A {Thermus aquaticus} PDB: 2ihe_A 2cwa_A 2ihf_A
Probab=99.73 E-value=7.5e-18 Score=147.72 Aligned_cols=88 Identities=14% Similarity=0.081 Sum_probs=76.4
Q ss_pred eeeeeeccceEEeeeeecccee---eceeeeeEEEEEechhHHHHHhhcCCCCeEEEEEEeeeccccCCCCceEEEEEEE
Q 027559 29 KLENIELNECVTMLDILLLIIH---HLQCLSSILLAVGGDMAQLCQKHLKPNDFIYVTGQLHSYSKVDKNGKLCLCYKVV 105 (222)
Q Consensus 29 ~~~~~~~~e~vt~~~iav~~r~---~~~~t~wI~Vv~WGklAE~~aqyLkKGD~V~VsGrL~sr~~~dkdGq~rs~~eVv 105 (222)
.+++.+.+.+++.|+||++++. ....++||+|++||++||.|+ ||+||++|+|+|+|++++|+|++|++++.++|+
T Consensus 142 e~r~t~~G~~v~~f~lAv~~~~~g~~~~~t~~~~v~~wg~~Ae~~~-~l~KG~~V~V~G~l~~~~~~~~dG~~~~~~ev~ 220 (264)
T 2fxq_A 142 DLRYTPQGTAVVRLGLAVNERRRGQEEERTHFLEVQAWRELAEWAS-ELRKGDGLLVIGRLVNDSWTSSSGERRFQTRVE 220 (264)
T ss_dssp CCEECTTCCEEEEEEEEEECCC-------EEEEEEEEEHHHHHHHT-TCCTTCEEEEEEEEEEEEEECTTSCEEEEEEEE
T ss_pred EEEECCCCCEEEEEEEEEcCCcCCCCccccEEEEEEEEChHHHHhh-hcCCCCEEEEEEEEEeeEEECCCCCEEEEEEEE
Confidence 3577888899999999999863 345789999999999999999 999999999999999999999999999999999
Q ss_pred EeeEEeeecCCC
Q 027559 106 VEDFNYVRECGQ 117 (222)
Q Consensus 106 V~el~Fv~~k~~ 117 (222)
|++|+|+++++.
T Consensus 221 a~~i~~l~~~~~ 232 (264)
T 2fxq_A 221 ALRLERPTRGPA 232 (264)
T ss_dssp EEEEECCCC---
T ss_pred EEEEEECccccc
Confidence 999999987654
No 17
>1txy_A Primosomal replication protein N; OB fold, dimer, DNA binding protein; 2.00A {Escherichia coli} SCOP: b.40.4.3 PDB: 1woc_A 2pnh_A 4apv_A
Probab=99.73 E-value=5.4e-18 Score=130.52 Aligned_cols=81 Identities=12% Similarity=0.005 Sum_probs=63.6
Q ss_pred eeeeeeccceEEeeeeeccceeeceeeee-------EEEEEechhHHHHHhhcCCCCeEEEEEEeeeccccCCCCceEEE
Q 027559 29 KLENIELNECVTMLDILLLIIHHLQCLSS-------ILLAVGGDMAQLCQKHLKPNDFIYVTGQLHSYSKVDKNGKLCLC 101 (222)
Q Consensus 29 ~~~~~~~~e~vt~~~iav~~r~~~~~t~w-------I~Vv~WGklAE~~aqyLkKGD~V~VsGrL~sr~~~dkdGq~rs~ 101 (222)
.+++.+.+.+++.|+||+... ..+++| |+|++||++||.|++||+||++|+|+|+|+++ +|++|+++
T Consensus 16 elR~t~~G~~v~~f~lA~~~~--~~~~~~~r~~~~~~~vv~~g~~Ae~~~~~l~KG~~V~V~G~L~~~--~~~~G~~r-- 89 (104)
T 1txy_A 16 LRKVSPSGIPHCQFVLEHRSV--QEEAGFHRQAWCQMPVIVSGHENQAITHSITVGSRITVQGFISCH--KAKNGLSK-- 89 (104)
T ss_dssp EEEECTTSCEEEEEEEEEEEE--EEETTEEEEEEEEEEEEEESSTTHHHHTTCCTTCEEEEEEEEEC----------C--
T ss_pred eEEECCCCCEEEEEEEEEeCc--cccCCceeceeEEEEEEEEhHHHHHHHhhCCCCCEEEEEEEEEec--cCCCCCEE--
Confidence 478899999999999998533 346677 99999999999999999999999999999998 78999988
Q ss_pred EEEEEeeEEeeecC
Q 027559 102 YKVVVEDFNYVREC 115 (222)
Q Consensus 102 ~eVvV~el~Fv~~k 115 (222)
++|+|++|+|++++
T Consensus 90 ~~v~~~~i~~l~~~ 103 (104)
T 1txy_A 90 MVLHAEQIELIDSG 103 (104)
T ss_dssp CEEEEEEEEEC---
T ss_pred EEEEEEEEEECcCC
Confidence 99999999999754
No 18
>3eiv_A Single-stranded DNA-binding protein 2; DNA damage, DNA repair, DNA replication, phosphoprotein; 2.14A {Streptomyces coelicolor}
Probab=99.73 E-value=8.3e-18 Score=144.31 Aligned_cols=84 Identities=15% Similarity=0.082 Sum_probs=66.5
Q ss_pred eeeeeeccceEEeeeeecccee-e-------ceeeeeEEEEEechhHHHHHhhcCCCCeEEEEEEeeeccccCCCCceEE
Q 027559 29 KLENIELNECVTMLDILLLIIH-H-------LQCLSSILLAVGGDMAQLCQKHLKPNDFIYVTGQLHSYSKVDKNGKLCL 100 (222)
Q Consensus 29 ~~~~~~~~e~vt~~~iav~~r~-~-------~~~t~wI~Vv~WGklAE~~aqyLkKGD~V~VsGrL~sr~~~dkdGq~rs 100 (222)
.+++.+.+..|+.|+||++++. + +.+++||+|++|+++||.|++||+||++|+|+|+|++++|+|++|++++
T Consensus 18 ElR~T~~G~~Va~FsLAvn~R~~d~~~Ge~~d~~T~wi~VvawgklAE~v~~~L~KG~~V~VeGrL~~rswedkdG~kr~ 97 (199)
T 3eiv_A 18 ELRFTPSGAAVAKFRVASTPRTFDRQTNEWKDGESLFLTCSVWRQAAENVAESLQRGMRVIVQGRLKQRSYEDREGVKRT 97 (199)
T ss_dssp EEEECTTCCEEEEEEEEECC-----------CCCCEEEEEEEETHHHHHHHHHCCTTCEEEEEEEEEEEC--------CC
T ss_pred eEEECCCCCEEEEEEEEEcCcccccCCCcEecCccEEEEEEEEhHHHHHHHHhcCCCCEEEEEEEEEeeEEECCCCCEEE
Confidence 4578888899999999997541 1 2379999999999999999999999999999999999999999999999
Q ss_pred EEEEEEeeEEee
Q 027559 101 CYKVVVEDFNYV 112 (222)
Q Consensus 101 ~~eVvV~el~Fv 112 (222)
.++|+|++|..-
T Consensus 98 ~~eVvA~~Ig~d 109 (199)
T 3eiv_A 98 VYELDVDEVGAS 109 (199)
T ss_dssp EEEEEEEEEEEE
T ss_pred EEEEEEEEEecc
Confidence 999999988763
No 19
>1v1q_A Primosomal replication protein N; primosome, DNA replication, DNA binding; 2.1A {Escherichia coli} SCOP: b.40.4.3 PDB: 2ccz_A
Probab=99.72 E-value=1.4e-17 Score=135.01 Aligned_cols=85 Identities=14% Similarity=0.077 Sum_probs=73.2
Q ss_pred eeeeeeeccceEEeeeeecccee-----eceeeeeEEEEEechhHHHHHhhcCCCCeEEEEEEeeeccccCCCCceEEEE
Q 027559 28 IKLENIELNECVTMLDILLLIIH-----HLQCLSSILLAVGGDMAQLCQKHLKPNDFIYVTGQLHSYSKVDKNGKLCLCY 102 (222)
Q Consensus 28 ~~~~~~~~~e~vt~~~iav~~r~-----~~~~t~wI~Vv~WGklAE~~aqyLkKGD~V~VsGrL~sr~~~dkdGq~rs~~ 102 (222)
-.++|.+.+.+++.|+||+.+.. ..+.++||+|++||++||.|++||+||++|+|+|+|++++ +++|++++.+
T Consensus 32 PElRyTpsG~~Va~ftLA~~~~~~~~G~~~~~~~~i~vv~wGk~AE~~~~yl~KGs~V~VeGrL~tr~--~k~G~kr~~~ 109 (134)
T 1v1q_A 32 PLRKVSPSGIPHCQFVLEHRSVQEEAGFHRQAWCQMPVIVSGHENQAITHSITVGSRITVQGFISCHK--AKNGLSKMVL 109 (134)
T ss_dssp EEEEECTTCCEEEEEEEEEEEEEEETTEEEEEEEEEEEEEESTGGGGGGTTCCTTCEEEEEEEEEEEC--TTTTSCEEEE
T ss_pred CceEECCCCCEEEEEEEEEeCcCcCCCCEecceEEEEEEEEhHHHHHHHHhcCCCCEEEEEEEEEEEE--CCCCCEEEEE
Confidence 35789999999999999986532 2235789999999999999999999999999999999984 7899998776
Q ss_pred EEEEeeEEeeecCC
Q 027559 103 KVVVEDFNYVRECG 116 (222)
Q Consensus 103 eVvV~el~Fv~~k~ 116 (222)
+|++|+|+++++
T Consensus 110 --~a~~i~~l~~k~ 121 (134)
T 1v1q_A 110 --HAEQIELIDSVD 121 (134)
T ss_dssp --EEEEEEETTSCS
T ss_pred --EEEEEEECcCCC
Confidence 899999998654
No 20
>1se8_A Single-strand binding protein; DNA binding protein; 1.80A {Deinococcus radiodurans} SCOP: b.40.4.3
Probab=99.71 E-value=3.6e-17 Score=147.09 Aligned_cols=89 Identities=13% Similarity=-0.033 Sum_probs=75.3
Q ss_pred eeeeeeccceEEeeeeecccee------eceeeeeEEEEEechhHHHHHhh-cCCCCeEEEEEEeeeccccCCCCceEEE
Q 027559 29 KLENIELNECVTMLDILLLIIH------HLQCLSSILLAVGGDMAQLCQKH-LKPNDFIYVTGQLHSYSKVDKNGKLCLC 101 (222)
Q Consensus 29 ~~~~~~~~e~vt~~~iav~~r~------~~~~t~wI~Vv~WGklAE~~aqy-LkKGD~V~VsGrL~sr~~~dkdGq~rs~ 101 (222)
.+++.+.+..++.|+||+.++. ..+.++||+|++||++||.|++| |+||++|+|+|+|++++|+|++|++++.
T Consensus 19 elr~t~~G~~v~~f~LAv~r~~~~~~G~~~~~t~~i~vv~~g~~Ae~~~~~~l~KG~~V~VeG~L~~r~~~dkdG~~r~~ 98 (301)
T 1se8_A 19 ELRYTGNGMAVFEATVAGEDRVIGNDGRERNLPWYHRVSILGKPAEWQAERNLKGGDAVVVEGTLEYRQWEAPEGGKRSA 98 (301)
T ss_dssp EEEECTTSCEEEEEEEEEEEEC-------CEEEEEEEEEEESHHHHHHHHTCCCTTCEEEEEEEEEEEEEC-----CEEE
T ss_pred eEEECCCCCEEEEEEEEEcCceECCCCCEecceEEEEEEEEcHHHHHHHhhCCCCCCEEEEEEEEEeeeEECCCCCEEEE
Confidence 4678888999999999998642 23468999999999999999999 9999999999999999999999999999
Q ss_pred EEEEEeeEEeeecCCC
Q 027559 102 YKVVVEDFNYVRECGQ 117 (222)
Q Consensus 102 ~eVvV~el~Fv~~k~~ 117 (222)
++|+|++|+|+++++.
T Consensus 99 ~ev~a~~i~~l~~~~~ 114 (301)
T 1se8_A 99 VNVKALRMEQLGTQPE 114 (301)
T ss_dssp EEEEEEEEEECSSCCC
T ss_pred EEEEEeEEEEeecccc
Confidence 9999999999987653
No 21
>2fxq_A Single-strand binding protein; strand beta-sheet extended loops, DNA binding protein; 1.85A {Thermus aquaticus} PDB: 2ihe_A 2cwa_A 2ihf_A
Probab=99.70 E-value=3.4e-17 Score=143.54 Aligned_cols=87 Identities=14% Similarity=0.067 Sum_probs=69.9
Q ss_pred eeeeeeccceEEeeeeeccceee------ceeeeeEEEEEechhHHHHHhhcCCCCeEEEEEEeeeccccCCCCceEEEE
Q 027559 29 KLENIELNECVTMLDILLLIIHH------LQCLSSILLAVGGDMAQLCQKHLKPNDFIYVTGQLHSYSKVDKNGKLCLCY 102 (222)
Q Consensus 29 ~~~~~~~~e~vt~~~iav~~r~~------~~~t~wI~Vv~WGklAE~~aqyLkKGD~V~VsGrL~sr~~~dkdGq~rs~~ 102 (222)
.+++.+.+.+++.|+||+.++.. .+.++||+|++||++||.+++||+||++|+|+|+|++++|++ +|++++.+
T Consensus 19 elr~t~~G~~v~~f~lA~~~~~~~~~G~~~~~t~~~~v~~~g~~Ae~~~~~l~KG~~V~V~G~L~~~~~~~-dG~~r~~~ 97 (264)
T 2fxq_A 19 DMRYTPGGLAILDLNLAGQDAFTDESGQEREVPWYHRVRLLGRQAEMWGDLLEKGQLIFVEGRLEYRQWEK-DGEKKSEV 97 (264)
T ss_dssp CCEECTTCCEEEEEEEEEEEEEECTTSCEEEEEEEEEEEEETHHHHHHTTTCCTTCEEEEEEEEEEC----------CCE
T ss_pred eEEECCCCCEEEEEEEEECCcEECCCCCEecccEEEEEEEEchHHHHHHHhCCCCCEEEEEEEEEeeeEEe-CCEEEEEE
Confidence 35788889999999999988632 346899999999999999999999999999999999999999 99999999
Q ss_pred EEEEeeEEeeecCC
Q 027559 103 KVVVEDFNYVRECG 116 (222)
Q Consensus 103 eVvV~el~Fv~~k~ 116 (222)
+|+|++|+|++++.
T Consensus 98 ev~a~~i~~l~~~~ 111 (264)
T 2fxq_A 98 QVRAEFIDPLEGRG 111 (264)
T ss_dssp EEEEEEEEECCCC-
T ss_pred EEEEEEEEECcCCc
Confidence 99999999998765
No 22
>3k81_C MP18 RNA editing complex protein; krepa6, single domain antibody, immune system, RNA BIND protein; 3.40A {Trypanosoma brucei}
Probab=99.68 E-value=3.8e-17 Score=136.75 Aligned_cols=84 Identities=12% Similarity=0.160 Sum_probs=69.7
Q ss_pred eeeeeccceEEeeeeecccee-------eceeeeeEEEEEechh-HHHHHhhcCCCCeEEEEEEeeeccccCCCCceEEE
Q 027559 30 LENIELNECVTMLDILLLIIH-------HLQCLSSILLAVGGDM-AQLCQKHLKPNDFIYVTGQLHSYSKVDKNGKLCLC 101 (222)
Q Consensus 30 ~~~~~~~e~vt~~~iav~~r~-------~~~~t~wI~Vv~WGkl-AE~~aqyLkKGD~V~VsGrL~sr~~~dkdGq~rs~ 101 (222)
+++.+ .+++.|+||++++. ..++++||+|++||++ ||+|++||+||++|+|+|+|++++|+|++|++++.
T Consensus 37 lR~t~--~~Va~fsLAt~~r~~~~~~ge~~~~Tdw~~Vv~wgk~lAE~~~~yL~KGs~V~VeGrL~tr~w~D~~g~k~~~ 114 (164)
T 3k81_C 37 GFVYE--DAVTQFTLTTTSIDTTHPTQEVVVEKDHHTIRCFGELFSAEVKQKVKEGNVVCVNGRLRLSPQLEPSCNKHFY 114 (164)
T ss_dssp EESSS--CEECCEEEEECCC--------CCCCCEEEEEEECCHHHHHHHHHHCCTTCEEEECCEEEEECCCCSSCSCCCC
T ss_pred EEEcC--ccEEEEEEEEcCceeeCCCCcCccceEEEEEEEECCHHHHHHHhhcCCCCEEEEEEEEEeeeEEcCCCCEEEE
Confidence 45666 78999999999531 1257999999999999 99999999999999999999999999999877664
Q ss_pred E-EEEEe----eEEeeecC
Q 027559 102 Y-KVVVE----DFNYVREC 115 (222)
Q Consensus 102 ~-eVvV~----el~Fv~~k 115 (222)
+ .|+|. .+.+|+++
T Consensus 115 ~~~i~V~~~~g~l~~L~~~ 133 (164)
T 3k81_C 115 FPYIQVQPPHGQVAVIHGD 133 (164)
T ss_dssp EEEEEECTTTCCEEEECC-
T ss_pred EEEEEEeCCCCEEEEecCC
Confidence 4 44555 79999865
No 23
>1se8_A Single-strand binding protein; DNA binding protein; 1.80A {Deinococcus radiodurans} SCOP: b.40.4.3
Probab=99.68 E-value=1.2e-16 Score=143.64 Aligned_cols=88 Identities=16% Similarity=0.140 Sum_probs=72.1
Q ss_pred eeeeeeccceEEeeeeeccceee------ceeeeeEEEEEechhHHHHHhhcCCCCeEEEEEEeeeccccCCCCceEEEE
Q 027559 29 KLENIELNECVTMLDILLLIIHH------LQCLSSILLAVGGDMAQLCQKHLKPNDFIYVTGQLHSYSKVDKNGKLCLCY 102 (222)
Q Consensus 29 ~~~~~~~~e~vt~~~iav~~r~~------~~~t~wI~Vv~WGklAE~~aqyLkKGD~V~VsGrL~sr~~~dkdGq~rs~~ 102 (222)
.+++.+.+..++.|+||++++.. ...++||+|++||++||.|++ |+||++|+|+|+|++++|+|++|++++.+
T Consensus 143 elr~t~~G~~v~~f~lAv~~~~~d~~Ge~~~~t~~i~vvawg~~Ae~~~~-l~KG~~V~V~GrL~~~~y~dkdG~~r~~~ 221 (301)
T 1se8_A 143 EIRYTPAGDAVLSLSIAVNENYQDRQGQRQEKVHYIDATLWRDLAENMKE-LRKGDPVMIMGRLVNEGWTDKDGNKRNST 221 (301)
T ss_dssp EEEECTTCCEEEEEEEEEEEEEECTTSCEEEEEEEEEEEEETHHHHHHTT-CCTTCEEEEEEEEEEEECC------CEEE
T ss_pred EEEECCCCCEEEEEEEEEcCceEcCCCCcccccEEEEEEECCHHHHHHHh-cCCCCEEEEEEEEeeeeEECCCCcEEEEE
Confidence 36788888999999999988532 247899999999999999999 99999999999999999999999999999
Q ss_pred EEEEeeEEeeecCCC
Q 027559 103 KVVVEDFNYVRECGQ 117 (222)
Q Consensus 103 eVvV~el~Fv~~k~~ 117 (222)
+|+|++|+|++++..
T Consensus 222 ev~a~~i~~l~~k~~ 236 (301)
T 1se8_A 222 RVEATRVEALARGAG 236 (301)
T ss_dssp EEEEEEEEECCC---
T ss_pred EEEEEEEEEeccCCC
Confidence 999999999987643
No 24
>3fhw_A Primosomal replication protein N; PRIB BPR162 X-RAY NESG, structural genomics, PSI-2, protein initiative; 1.90A {Bordetella parapertussis} PDB: 3dm4_A 3klw_A
Probab=99.63 E-value=1.2e-15 Score=120.78 Aligned_cols=82 Identities=13% Similarity=0.008 Sum_probs=69.7
Q ss_pred eeeeeeccceEEeeeeecccee-----eceeeeeEEEEEechhHHHHHhhcCCCCeEEEEEEeeeccccCCCCceEEEEE
Q 027559 29 KLENIELNECVTMLDILLLIIH-----HLQCLSSILLAVGGDMAQLCQKHLKPNDFIYVTGQLHSYSKVDKNGKLCLCYK 103 (222)
Q Consensus 29 ~~~~~~~~e~vt~~~iav~~r~-----~~~~t~wI~Vv~WGklAE~~aqyLkKGD~V~VsGrL~sr~~~dkdGq~rs~~e 103 (222)
.++|.+.+.+++.|+||+.++. ..+.++||+|++||++||.+ +||+||++|+|+|+|++++ ++| +.++
T Consensus 15 elRyTpsG~~V~~f~LA~~~~~~~~g~~r~~~~~i~vv~~Gk~AE~~-~~l~kGs~V~VeGrL~trs---~~G---~kl~ 87 (115)
T 3fhw_A 15 AMRHTPAGLPALELLLVHESEVVEAGHPRRVELTISAVALGDLALLL-ADTPLGTEMQVQGFLAPAR---KDS---VKVK 87 (115)
T ss_dssp CCEECTTSCEEEEEEEEEEEECCCCC--CEEEEEEEEEEETHHHHHH-TTCCTTCEEEEEEEEEESS---TTC---SSEE
T ss_pred ceEECCCCCEEEEEEEEEcceeecCCCeeeeeEEEEEEEEhHHHHhh-hccCCCCEEEEEEEEEECC---CCC---CEEE
Confidence 4688899999999999987542 23456679999999999998 9999999999999999986 678 5689
Q ss_pred EEEeeEEeeecCCC
Q 027559 104 VVVEDFNYVRECGQ 117 (222)
Q Consensus 104 VvV~el~Fv~~k~~ 117 (222)
|.|++|+|+++.++
T Consensus 88 l~a~~Ie~l~~~~~ 101 (115)
T 3fhw_A 88 LHLQQARRIAGSMG 101 (115)
T ss_dssp EEEEEEEECCCSCC
T ss_pred EEEEEEEEcCCCCC
Confidence 99999999987643
No 25
>4dni_A Fusion protein of RNA-editing complex proteins MP MP18; krepa3, krepa6, editosome, protein/RNA binding, protein BIND binding protein; 2.55A {Trypanosoma brucei}
Probab=99.62 E-value=1.4e-15 Score=134.85 Aligned_cols=83 Identities=12% Similarity=0.234 Sum_probs=71.4
Q ss_pred eeeeeeccceEEeeeeeccceee-------ceeeeeEEEEEechh--HHHHHhhcCCCCeEEEEEEeeeccccCCCCceE
Q 027559 29 KLENIELNECVTMLDILLLIIHH-------LQCLSSILLAVGGDM--AQLCQKHLKPNDFIYVTGQLHSYSKVDKNGKLC 99 (222)
Q Consensus 29 ~~~~~~~~e~vt~~~iav~~r~~-------~~~t~wI~Vv~WGkl--AE~~aqyLkKGD~V~VsGrL~sr~~~dkdGq~r 99 (222)
.+++++ +.+++.|+||++++.. .+.++||+|++||++ || +++||+||++|+|+|+|++++|+|++|+++
T Consensus 159 ElR~t~-G~~Va~FslAv~~~~~~~~~~e~~~~Tdw~~Vv~wgk~~~AE-i~~~L~KG~~V~VeGrL~tr~~~D~~G~kr 236 (257)
T 4dni_A 159 QSGFVY-EDAVTQFTLTTTSIDTTHPTQEVVVEKDHHTIRCFGELFSAE-VKQKVKEGNVVCVNGRLRLSPQLEPSCNKH 236 (257)
T ss_dssp EEEEET-TEEEEEEEEEEEEEECCCTTCSCEEEEEEEEEEEESHHHHHH-HHHHCCTTCEEEEEEEEEEEEEECSSSSCE
T ss_pred EEEEeC-CcEEEEEEEEECCCccCCCCceEccceEEEEEEEECCccHHH-HHhhCCCCCEEEEEEEEEeeeEEcCCCCEE
Confidence 467888 9999999999998632 238999999999999 99 888999999999999999999999999999
Q ss_pred EEEEEE-Ee----eEEeee
Q 027559 100 LCYKVV-VE----DFNYVR 113 (222)
Q Consensus 100 s~~eVv-V~----el~Fv~ 113 (222)
+.++|+ |. +|.+|.
T Consensus 237 ~~~~vI~V~~~~g~v~~l~ 255 (257)
T 4dni_A 237 FYFPYIQVQPPHGQVAVIH 255 (257)
T ss_dssp EEEEEEEECTTTCEEEECC
T ss_pred EEEEEEEEECCCCEEEEec
Confidence 998864 44 555554
No 26
>3k8a_A Putative primosomal replication protein; beta-barrel, OB-fold, DNA binding protein; 2.70A {Neisseria gonorrhoeae fa 1090}
Probab=99.52 E-value=5.6e-14 Score=108.87 Aligned_cols=77 Identities=12% Similarity=0.011 Sum_probs=64.2
Q ss_pred eeeeeeccceEEeeeeecccee-----eceeeeeEEEEEechhHHHHHhhcCCCCeEEEEEEeeeccccCCCCceEEEEE
Q 027559 29 KLENIELNECVTMLDILLLIIH-----HLQCLSSILLAVGGDMAQLCQKHLKPNDFIYVTGQLHSYSKVDKNGKLCLCYK 103 (222)
Q Consensus 29 ~~~~~~~~e~vt~~~iav~~r~-----~~~~t~wI~Vv~WGklAE~~aqyLkKGD~V~VsGrL~sr~~~dkdGq~rs~~e 103 (222)
.++|.+.+.+++.|+||+.++. ..+.++||+|++||++|| +.+ |+||++|+|+|+|++++| +|. ...
T Consensus 21 elRytp~G~~v~~f~lA~~~~~~~~g~~~~~~~~i~vv~~gk~Ae-~~~-l~KG~~v~veGrL~~rs~---~~~---~lv 92 (103)
T 3k8a_A 21 PIRYTPAGIPVLDIILKHESWQEENGQQCLVQLEIPARILGRQAE-EWQ-YRQGDCATVEGFLAQKSR---RSL---MPM 92 (103)
T ss_dssp CCEECTTSCEEEEEEEEEEEEEEETTEEEEEEEEEEEEEEHHHHH-HST-TCTTCEEEEEEEEEESSS---SCC---CEE
T ss_pred ceEECCCCCEEEEEEEEEcccCccCCCEEEeeEEEEEEEEhHHhh-hhc-cCCCCEEEEEEEEEECcc---CCc---cEE
Confidence 4688999999999999997653 223345699999999999 665 999999999999999999 333 578
Q ss_pred EEEeeEEeee
Q 027559 104 VVVEDFNYVR 113 (222)
Q Consensus 104 VvV~el~Fv~ 113 (222)
+.+++|++++
T Consensus 93 lhi~~i~~i~ 102 (103)
T 3k8a_A 93 LRIQNIKEYK 102 (103)
T ss_dssp EEEEEEEECC
T ss_pred EEEEEEEEcC
Confidence 8999999985
No 27
>3stb_C RNA-editing complex protein MP42; editosome, nanobody, single domain antibody, VH krepa3, krepa6, RNA binding protein-immune system complex; 2.50A {Trypanosoma brucei}
Probab=99.42 E-value=5.9e-13 Score=109.81 Aligned_cols=74 Identities=15% Similarity=0.142 Sum_probs=65.1
Q ss_pred eeeeccceEEeeeeeccce---eeceeeeeEEEEEec-hhHHHHHhhcCCCCeEEEEEEeeeccccCCCCceEEEEEEE
Q 027559 31 ENIELNECVTMLDILLLII---HHLQCLSSILLAVGG-DMAQLCQKHLKPNDFIYVTGQLHSYSKVDKNGKLCLCYKVV 105 (222)
Q Consensus 31 ~~~~~~e~vt~~~iav~~r---~~~~~t~wI~Vv~WG-klAE~~aqyLkKGD~V~VsGrL~sr~~~dkdGq~rs~~eVv 105 (222)
++.. .+.++.|+||++.. .+..+++||+|.+|| ++||.+.+||+||++|+|+|||++++|+|++|+++|.+-++
T Consensus 59 ry~~-~~~Va~FtLAV~~~~~r~ge~~tdf~~V~vfGg~lAE~i~~ylkkG~rVlVeGRLrmn~~~d~~gkk~Y~~p~i 136 (148)
T 3stb_C 59 GFVF-EDKVLQFTLITDFEGPSPGDPDKDFHTVRVFDSDYSSRVKEQLRDGEWFLVTGRLRMVPQYDGSMRKYYHYPVI 136 (148)
T ss_dssp EEET-TEEEEEEEEEEECSSCCTTSCSEEEEEEEECSHHHHHHHHHHCCTTCEEEEEEEEEEEEEEETTTTEEEEEEEE
T ss_pred cccC-CCcEEEEEEEEecCCCCCCCCccceEEEEEECChHHHHHHHHhcCCCEEEEEEEEEcceeECCCCCEEeeccEE
Confidence 4443 56899999999774 345689999999995 99999999999999999999999999999999999988775
No 28
>4dni_A Fusion protein of RNA-editing complex proteins MP MP18; krepa3, krepa6, editosome, protein/RNA binding, protein BIND binding protein; 2.55A {Trypanosoma brucei}
Probab=99.41 E-value=3.1e-13 Score=119.80 Aligned_cols=83 Identities=13% Similarity=0.073 Sum_probs=67.7
Q ss_pred eeeeeeccceEEeeeeeccce---eeceeeeeEEEEEec-hhHHHHHhhcCCCCeEEEEEEeeeccccCCCCceEEEEEE
Q 027559 29 KLENIELNECVTMLDILLLII---HHLQCLSSILLAVGG-DMAQLCQKHLKPNDFIYVTGQLHSYSKVDKNGKLCLCYKV 104 (222)
Q Consensus 29 ~~~~~~~~e~vt~~~iav~~r---~~~~~t~wI~Vv~WG-klAE~~aqyLkKGD~V~VsGrL~sr~~~dkdGq~rs~~eV 104 (222)
-++|.+.+. ++.+++++... .+..+++||+|++|| ++||.|++||+||++|+|+|||++ |+++||++++.++|
T Consensus 43 ElRyT~~g~-~a~~~lav~~~~~~~ge~~~df~~vv~wg~k~AE~~~~yl~kG~~V~VeGrL~~--~~~~dG~kr~~~ev 119 (257)
T 4dni_A 43 QEGFVFEDK-VLQFTLITDFEGPSPGDPDKDFHTVRVFDSDYSSRVKEQLRDGEWFLVTGRLRM--VPQYDGSMRKYYHY 119 (257)
T ss_dssp EEEEETTEE-EEEEEEEEECCCCCSSCCCEEEEEEEECSHHHHHHHHHHCCTTCEEEEEEEEEE--EEEECSSSSSEEEE
T ss_pred EEEECCCCC-EEEEEEEEEecCCCCCCCcccEEEEEEECCHHHHHHHHhccCCCEEEEEEEEEE--eECCCCCcEEEEEE
Confidence 467777662 44555555443 344568899999999 999999999999999999999999 78899999999999
Q ss_pred EEeeEEeeec
Q 027559 105 VVEDFNYVRE 114 (222)
Q Consensus 105 vV~el~Fv~~ 114 (222)
+|.++.-+.+
T Consensus 120 va~~v~~~~G 129 (257)
T 4dni_A 120 PVIQVHPGCG 129 (257)
T ss_dssp EEEEECTTTC
T ss_pred EEEEEEecCC
Confidence 9999877543
No 29
>3en2_A Probable primosomal replication protein N; PRIB RSR213C NESG X-RAY Q8XZT7 Q8XZT7_ralso, structural genomics, PSI-2; 2.30A {Ralstonia solanacearum}
Probab=99.28 E-value=8.1e-12 Score=96.85 Aligned_cols=65 Identities=15% Similarity=0.058 Sum_probs=52.1
Q ss_pred eeeeeeccceEEeeeeecccee-----eceeeeeEEEEEechhHHHHHhhcCCCCeEEEEEEeeeccccCC
Q 027559 29 KLENIELNECVTMLDILLLIIH-----HLQCLSSILLAVGGDMAQLCQKHLKPNDFIYVTGQLHSYSKVDK 94 (222)
Q Consensus 29 ~~~~~~~~e~vt~~~iav~~r~-----~~~~t~wI~Vv~WGklAE~~aqyLkKGD~V~VsGrL~sr~~~dk 94 (222)
.++|.+.+..++.|+||+.++. ..+.++||+|++||++||.+++ ++||++|.|+|+|++++|.++
T Consensus 16 elRyTpsG~~V~~f~LA~~s~~~e~g~~r~~~f~i~vv~wGk~AE~~~~-~~kGs~V~VeGrL~trs~~s~ 85 (101)
T 3en2_A 16 VMRYTPAGVPIVNCLLSYSGQAMEAQAARQVEFSIEALGAGKMASVLDR-IAPGTVLECVGFLARKHRSSK 85 (101)
T ss_dssp CCEECTTCCEEEEEEEEEEEEEECC--EEEEEEEEEEEEETHHHHHHTT-SCTTCEEEEEEEEEECC----
T ss_pred cEEECCCCCEEEEEEEEEcceEecCCCcEeeeEEEEEEEEhHHHHHHhh-cCCCCEEEEEEEEEeCcCCCC
Confidence 4688899999999999987653 1234455999999999999997 689999999999999999643
No 30
>4dka_C RNA-editing complex protein MP81; krepa1, VHH, single domain antibody, protein binding, RNA BI protein-immune system complex; 1.97A {Trypanosoma brucei} PDB: 4dk3_C 4dk6_C
Probab=96.35 E-value=0.011 Score=46.06 Aligned_cols=70 Identities=17% Similarity=0.097 Sum_probs=45.9
Q ss_pred eeeeeeec----cceEEeeeeeccceeeceeeeeEEEEEechhH--HHHHhhcCCCCeEEEEEEeeeccccCCCCceE
Q 027559 28 IKLENIEL----NECVTMLDILLLIIHHLQCLSSILLAVGGDMA--QLCQKHLKPNDFIYVTGQLHSYSKVDKNGKLC 99 (222)
Q Consensus 28 ~~~~~~~~----~e~vt~~~iav~~r~~~~~t~wI~Vv~WGklA--E~~aqyLkKGD~V~VsGrL~sr~~~dkdGq~r 99 (222)
=.+..++. .+.++.|++.+ +.+...+-++|.|-++|+.+ +.+-+.|+.|..|.|.|+|++..--|. +.++
T Consensus 10 G~V~DVQ~Gfl~~~~V~Qftl~~-d~e~~~eke~~tVRC~Gd~~~~~~lk~~lk~g~~v~V~GrLRm~p~~d~-~~kk 85 (105)
T 4dka_C 10 GRIADVQHGFLGAMTVTQYVLEV-DGGASGEKEFIVIRCMGDNFPASLLKDQVKLGSRVLVQGTLRMNRHVDD-VSKR 85 (105)
T ss_dssp EEEEEEEEEEETTEEEEEEEEEE-CC----CCEEEEEEEECC---------CCCTTCEEEEEEEEECCCEECT-TTCS
T ss_pred EEEEEeeecccccceEEEEEEEE-eCCCCCcccEEEEEEcCccchHHHHHHHHhCCCEEEEEeEEEeeecccc-ccce
Confidence 34555554 67888888766 44556777899999999998 889999999999999999998776543 4444
No 31
>2k50_A Replication factor A related protein; uncharacterized protein, structural genomics, PSI-2; NMR {Methanothermobacterthermautotrophicus str}
Probab=87.57 E-value=0.49 Score=35.39 Aligned_cols=34 Identities=12% Similarity=0.035 Sum_probs=28.7
Q ss_pred eEEEEEechhHHHHHhhcCCCCeEEEEEEeeeccc
Q 027559 57 SILLAVGGDMAQLCQKHLKPNDFIYVTGQLHSYSK 91 (222)
Q Consensus 57 wI~Vv~WGklAE~~aqyLkKGD~V~VsGrL~sr~~ 91 (222)
-|.+++|++.|+.. +.|+.|+.|+|+|......|
T Consensus 55 ~I~~t~w~~~~~~~-~~l~~G~vv~i~g~~v~~~f 88 (115)
T 2k50_A 55 ELRAVFWTENIKLL-KKFREGDVIRIKDVNIRGGF 88 (115)
T ss_dssp EEEEEEETTGGGGG-GTCCTTSEEEEEEEEECCCS
T ss_pred eEEEEEeCchhhhh-hcCCCCCEEEEEeeEEcccc
Confidence 68999999998865 67999999999998855445
No 32
>3dm3_A Replication factor A; probably plays AN essential for replication of the chromosome, DNA recombination and repair; 2.40A {Methanocaldococcus jannaschii}
Probab=86.87 E-value=0.49 Score=35.83 Aligned_cols=47 Identities=13% Similarity=0.289 Sum_probs=35.6
Q ss_pred eEEEEEechhHHHHHhhcCCCCeEEEEEEeeeccccCCCCceEEEEEEEEeeEEeeec
Q 027559 57 SILLAVGGDMAQLCQKHLKPNDFIYVTGQLHSYSKVDKNGKLCLCYKVVVEDFNYVRE 114 (222)
Q Consensus 57 wI~Vv~WGklAE~~aqyLkKGD~V~VsGrL~sr~~~dkdGq~rs~~eVvV~el~Fv~~ 114 (222)
-|++++|++.|+. .+++||.|.|.|+.+... .|. +++.+.+-.-|..
T Consensus 53 ~IrvtlW~~~a~~---~l~~Gdvv~i~g~vk~~~----~g~----~eL~~g~~~~i~~ 99 (105)
T 3dm3_A 53 SIRVTLWDNLTDI---DVGRGDYVRVRGYIREGY----YGG----LECTANYVEILKK 99 (105)
T ss_dssp EEEEEEEGGGGGS---CCCTTCEEEEEEEEEECT----TSS----EEEEEEEEEEEEC
T ss_pred cEEEEEECccccc---ccCCCCEEEEEEEEEEcc----CCC----EEEEeCCceEEEe
Confidence 4899999999987 799999999999887642 232 4666666555543
No 33
>3e0e_A Replication protein A; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; 1.60A {Methanococcus maripaludis} PDB: 2k5v_A
Probab=86.24 E-value=0.55 Score=34.76 Aligned_cols=47 Identities=17% Similarity=0.263 Sum_probs=34.8
Q ss_pred eeeEEEEEechhHHHHHhhcCCCCeEEEEEEeeeccccCCCCceEEEEEEEEeeEEeee
Q 027559 55 LSSILLAVGGDMAQLCQKHLKPNDFIYVTGQLHSYSKVDKNGKLCLCYKVVVEDFNYVR 113 (222)
Q Consensus 55 t~wI~Vv~WGklAE~~aqyLkKGD~V~VsGrL~sr~~~dkdGq~rs~~eVvV~el~Fv~ 113 (222)
|--|.+++|++.|+. -++.||.|.|.|+.+.. .| .+++.+..-.-|+
T Consensus 48 TG~I~~tlW~~~~~~---~i~~Gdvv~i~g~v~~~-----~~----~~el~~g~~~~i~ 94 (97)
T 3e0e_A 48 TGSIRGTLWNELADF---EVKKGDIAEVSGYVKQG-----YS----GLEISVDNIGIIE 94 (97)
T ss_dssp TEEEEEEEEGGGGGC---CCCTTCEEEEEEEEEEC-----------CEEEEEEEEEEEE
T ss_pred CCcEEEEEECCcccc---ccCCCCEEEEEEEEEEc-----CC----eEEEEECCCcEEE
Confidence 346899999999987 69999999999987543 12 4677776655554
No 34
>1ynx_A Replication factor-A protein 1; canonical OB fold, DNA binding protein; NMR {Saccharomyces cerevisiae}
Probab=81.73 E-value=1.1 Score=33.94 Aligned_cols=29 Identities=21% Similarity=0.219 Sum_probs=27.4
Q ss_pred eEEEEEechhHHHHHhhcCCCCeEEEEEE
Q 027559 57 SILLAVGGDMAQLCQKHLKPNDFIYVTGQ 85 (222)
Q Consensus 57 wI~Vv~WGklAE~~aqyLkKGD~V~VsGr 85 (222)
-|.+++|+++|+.....|+.|+.++|+|-
T Consensus 52 ~I~at~~~~~~~~f~~~l~eG~vy~Is~~ 80 (114)
T 1ynx_A 52 EIRATAFNDFATKFNEILQEGKVYYVSKA 80 (114)
T ss_dssp EEEEEECHHHHHHHHHHSCSSSEEEEESC
T ss_pred eEEEEECHHHHHHHHhhcccCcEEEECCc
Confidence 78999999999999999999999999983
No 35
>2hql_A Hypothetical protein Mg376 homolog; structural genomics, conserved hypothetical protein, GI:1673959, MPN554, OB fold; 2.00A {Mycoplasma pneumoniae}
Probab=79.56 E-value=8.5 Score=29.49 Aligned_cols=51 Identities=20% Similarity=0.175 Sum_probs=39.4
Q ss_pred ceeeeeEEEEEechhHHHHHhhcCCCCeEEEEEEeeeccccCCCCceEEEEE
Q 027559 52 LQCLSSILLAVGGDMAQLCQKHLKPNDFIYVTGQLHSYSKVDKNGKLCLCYK 103 (222)
Q Consensus 52 ~~~t~wI~Vv~WGklAE~~aqyLkKGD~V~VsGrL~sr~~~dkdGq~rs~~e 103 (222)
..=++|+-+-+-|.||--..+|.+|=.-|.|+|.|+++. +-+.+...+.++
T Consensus 42 r~FTDyyViYAN~QL~~ELEky~~k~k~isieG~L~TY~-ekkS~iWKTtI~ 92 (110)
T 2hql_A 42 RLFTDYYVIYANGQLAYELEKHTKKYKTISIEGILRTYL-ERKSEIWKTTIE 92 (110)
T ss_dssp EEEEEEEEEEEEHHHHHHHHHHHTTCSEEEEEEEEEEEE-ETTTTEEEEEEE
T ss_pred ccceeEEEEEECCeeehhHHHhhhhceEEEEeeehhhHH-HHhcccceeEEE
Confidence 345678888999999999999999999999999999754 224566554333
No 36
>2vl6_A SSO MCM N-TER, minichromosome maintenance protein MCM; helicase, hydrolase, zinc-finger, ATP-binding, DNA-BIND ssDNA binding; 2.8A {Sulfolobus solfataricus}
Probab=79.29 E-value=5.6 Score=34.04 Aligned_cols=54 Identities=15% Similarity=0.255 Sum_probs=40.3
Q ss_pred eeEEEEEechhHHHHHhhcCCCCeEEEEEEeeecccc--CCCCceEEEEEEEEeeEEeee
Q 027559 56 SSILLAVGGDMAQLCQKHLKPNDFIYVTGQLHSYSKV--DKNGKLCLCYKVVVEDFNYVR 113 (222)
Q Consensus 56 ~wI~Vv~WGklAE~~aqyLkKGD~V~VsGrL~sr~~~--dkdGq~rs~~eVvV~el~Fv~ 113 (222)
--+.|.+-++|.+ .++.||.|.|.|-+...... .+.+...+.+-|.|++|+.+.
T Consensus 211 rsi~v~l~~dLvd----~~~PGDrV~vtGI~~~~~~~~~~~~~~~~~~~yl~an~I~~~~ 266 (268)
T 2vl6_A 211 RQLEIILEDDLVD----SARPGDRVKVTGILDIKQDSPVKRGSRAVFDIYMKVSSIEVSQ 266 (268)
T ss_dssp CEEEEEEEGGGTT----SSCTTCEEEEEEEEEEECSSTTCCSSCCEEEEEEEEEEEEEC-
T ss_pred cEEEEEEccCccC----cccCCCEEEEEEEEEEeecccccCCCceEEEEEEEEEEEEEec
Confidence 4578999999976 67999999999998876543 224455667777888887654
No 37
>4hik_A Protection of telomeres protein 1; specificity, plasticity, promiscuity, OB-fold, ssDNA binding stranded telomeric DNA; HET: DNA; 1.64A {Schizosaccharomyces pombe} PDB: 4hid_A* 4him_A* 4hio_A* 4hj5_A* 4hj7_A* 4hj8_A* 4hj9_A* 4hja_A*
Probab=72.59 E-value=2.9 Score=33.72 Aligned_cols=27 Identities=19% Similarity=0.360 Sum_probs=24.6
Q ss_pred eEEEEEechhHHHHHhhcCCCCeEEEE
Q 027559 57 SILLAVGGDMAQLCQKHLKPNDFIYVT 83 (222)
Q Consensus 57 wI~Vv~WGklAE~~aqyLkKGD~V~Vs 83 (222)
=++|++|+..|..|.++|+.||.|.+.
T Consensus 66 tlqVtlwd~ha~~ar~~lk~Gd~v~L~ 92 (143)
T 4hik_A 66 SIRCILWDEHDFYCRNYIKEGDYVVMK 92 (143)
T ss_dssp CEEEEECHHHHHHHTTTCCTTCEEEEE
T ss_pred EEEEEEECcHHHHHHhhCCCCCEEEEE
Confidence 468999999999999999999999874
No 38
>1o7i_A SSB, SSO2364, single stranded DNA binding protein; OB fold; 1.2A {Sulfolobus solfataricus} SCOP: b.40.4.3
Probab=71.91 E-value=4 Score=30.87 Aligned_cols=29 Identities=14% Similarity=0.272 Sum_probs=24.7
Q ss_pred eEEEEEechhHHHHHhhcCCCCeEEEE-EEeeec
Q 027559 57 SILLAVGGDMAQLCQKHLKPNDFIYVT-GQLHSY 89 (222)
Q Consensus 57 wI~Vv~WGklAE~~aqyLkKGD~V~Vs-GrL~sr 89 (222)
-|.+++|++.|+ .++.|+-|+|. |+....
T Consensus 50 ~I~~tlW~~~~~----~~~~G~vv~i~~g~v~~~ 79 (119)
T 1o7i_A 50 RVKLTLWGKHAG----SIKEGQVVKIENAWTTAF 79 (119)
T ss_dssp EEEEEEEGGGTT----CCCTTCEEEEEEEEEEEE
T ss_pred EEEEEEECChhh----cCCCCCEEEEEeEEEEEe
Confidence 389999999984 58999999999 888753
No 39
>4gop_B Putative uncharacterized protein; OB fold, ssDNA binding, DNA binding protein-DNA complex; HET: DNA; 3.10A {Ustilago maydis}
Probab=67.15 E-value=11 Score=29.00 Aligned_cols=49 Identities=16% Similarity=0.196 Sum_probs=33.7
Q ss_pred eEEEEEechhHHH---HHhhcCCCCeEEEEEEeeeccccCCCCceEEEEEEEEeeEEeeec
Q 027559 57 SILLAVGGDMAQL---CQKHLKPNDFIYVTGQLHSYSKVDKNGKLCLCYKVVVEDFNYVRE 114 (222)
Q Consensus 57 wI~Vv~WGklAE~---~aqyLkKGD~V~VsGrL~sr~~~dkdGq~rs~~eVvV~el~Fv~~ 114 (222)
-|+|..|....+. -...++.|+.|.|.|++++. .|+ .+|.+..+.-++.
T Consensus 65 ~I~~~~W~~~~~~~~~~~~~~~~g~yVrV~G~v~~f-----~g~----~qi~~~~ir~v~d 116 (136)
T 4gop_B 65 QIEVRQWLDSSSDDSSKASEIRNNVYVRVLGTLKSF-----QNR----RSISSGHMRPVID 116 (136)
T ss_dssp EEEEEEECC--------CCSCCTTCEEEEEEEEEEE-----TTE----EEEEESEEEECSS
T ss_pred CEEEEEecccCCcccccccccCCCCEEEEEEEEEEe-----CCE----EEEEEEEEEECCC
Confidence 4899999876653 35679999999999999874 244 3566666766654
No 40
>1eov_A ASPRS, aspartyl-tRNA synthetase; aminoacyl tRNA synthetase, tRNA ligase, APO-enzyme, OB-fold,; 2.30A {Saccharomyces cerevisiae} SCOP: b.40.4.1 d.104.1.1 PDB: 1asy_A* 1asz_A*
Probab=66.10 E-value=27 Score=32.83 Aligned_cols=58 Identities=12% Similarity=0.112 Sum_probs=40.0
Q ss_pred eEEEEEech----hH---HHHHhhcCCCCeEEEEEEeeeccccCCCCceEEEEEEEEeeEEeeecC
Q 027559 57 SILLAVGGD----MA---QLCQKHLKPNDFIYVTGQLHSYSKVDKNGKLCLCYKVVVEDFNYVREC 115 (222)
Q Consensus 57 wI~Vv~WGk----lA---E~~aqyLkKGD~V~VsGrL~sr~~~dkdGq~rs~~eVvV~el~Fv~~k 115 (222)
.|+|++-.+ +. ...++.|+.||.|.|+|.+..+.-..++ ...-.+||.|+++..|...
T Consensus 66 ~iQvv~~~~~~~~~~~~~~~~~~~l~~e~~V~V~G~v~~~~~~~~~-~~~g~~El~~~~i~vl~~a 130 (487)
T 1eov_A 66 LIQGLVKANKEGTISKNMVKWAGSLNLESIVLVRGIVKKVDEPIKS-ATVQNLEIHITKIYTISET 130 (487)
T ss_dssp EEEEEEECCSSSSSCHHHHHHHTTCCTTCEEEEEEEEEECSSCCTT-SSEEEEEEEEEEEEEEECC
T ss_pred cEEEEEeccccccccHHHHHHHhcCCCCCEEEEEEEEEeCCCCCcC-CCCCcEEEEEEEEEEeecc
Confidence 467777432 22 2334679999999999999876432222 2334699999999999864
No 41
>3kdf_D Replication protein A 32 kDa subunit; wheat GERM cell free, protein complex, center for eukaryotic structural genomics, PSI; HET: MSE; 1.98A {Homo sapiens} SCOP: b.40.4.3 PDB: 2pqa_A 1quq_A 1l1o_B
Probab=62.16 E-value=16 Score=27.94 Aligned_cols=49 Identities=16% Similarity=0.238 Sum_probs=32.2
Q ss_pred eEEEEEechhHHH--HHhhcCCCCeEEEEEEeeeccccCCCCceEEEEEEEEeeEEeeec
Q 027559 57 SILLAVGGDMAQL--CQKHLKPNDFIYVTGQLHSYSKVDKNGKLCLCYKVVVEDFNYVRE 114 (222)
Q Consensus 57 wI~Vv~WGklAE~--~aqyLkKGD~V~VsGrL~sr~~~dkdGq~rs~~eVvV~el~Fv~~ 114 (222)
-|+|..|.+..+. ....++.|+-|.|.|+|++. .|+ .+|.+..+.-++.
T Consensus 61 ~I~~~~W~~~~~~~~~~~~~~~g~yVrV~G~l~~f-----~g~----~qi~~~~ir~v~d 111 (132)
T 3kdf_D 61 PMDVRQWVDTDDTSSENTVVPPETYVKVAGHLRSF-----QNK----KSLVAFKIMPLED 111 (132)
T ss_dssp CEEEEEEC---------CCCCTTCEEEEEEEEEEE-----TTE----EEEEEEEEEECSS
T ss_pred EEEEEEEccCCCcccccccccCCCEEEEEEEEEeE-----CCE----EEEEEEEEEEcCC
Confidence 5789999876533 35679999999999999974 244 3466666766654
No 42
>1jmc_A Protein (replication protein A (RPA)); human ssDNA binding replication protein A(RPA), single stranded DNA-binding protein, protein-ssDNA complex; HET: DNA; 2.40A {Homo sapiens} SCOP: b.40.4.3 b.40.4.3 PDB: 1fgu_A
Probab=60.74 E-value=7.3 Score=32.31 Aligned_cols=28 Identities=11% Similarity=0.069 Sum_probs=26.8
Q ss_pred eEEEEEechhHHHHHhhcCCCCeEEEEE
Q 027559 57 SILLAVGGDMAQLCQKHLKPNDFIYVTG 84 (222)
Q Consensus 57 wI~Vv~WGklAE~~aqyLkKGD~V~VsG 84 (222)
-|.+++|+++|+.....|+.|+.++|++
T Consensus 56 ~I~at~~~~~~~~~~~~l~~G~vy~i~~ 83 (246)
T 1jmc_A 56 EIRATAFNEQVDKFFPLIEVNKVYYFSK 83 (246)
T ss_dssp EEEEEEEHHHHHHHGGGCCTTCEEEEEC
T ss_pred eEEEEEChHHHHHhhhhcccCCEEEECC
Confidence 6899999999999999999999999998
No 43
>1ltl_A DNA replication initiator (CDC21/CDC54); HET: DNA; 3.00A {Methanothermobacterthermautotrophicus} SCOP: b.40.4.11
Probab=58.55 E-value=14 Score=31.85 Aligned_cols=51 Identities=18% Similarity=0.288 Sum_probs=37.9
Q ss_pred eeEEEEEechhHHHHHhhcCCCCeEEEEEEeeeccccCCCCceEEEEEEEEeeEEeee
Q 027559 56 SSILLAVGGDMAQLCQKHLKPNDFIYVTGQLHSYSKVDKNGKLCLCYKVVVEDFNYVR 113 (222)
Q Consensus 56 ~wI~Vv~WGklAE~~aqyLkKGD~V~VsGrL~sr~~~dkdGq~rs~~eVvV~el~Fv~ 113 (222)
--+.|.+-++|.+ .+++||.|.|.|-+.... +.+...+.+-|.|++|+-..
T Consensus 198 rsi~V~l~~dLvd----~~~PGDrV~vtGI~~~~~---~~~~~~~~~~l~a~~I~~~~ 248 (279)
T 1ltl_A 198 RQITVVLEDDLVD----TLTPGDIVRVTGTLRTVR---DERTKRFKNFIYGNYTEFLE 248 (279)
T ss_dssp CEEEEEEEGGGTT----CCCTTCEEEEEEEEEEEE---ETTTTEEEEEEEEEECCBC-
T ss_pred eEEEEEEcccccC----ccCCCCEEEEEEEEEEee---CCCCceEEEEEEEEEEEEec
Confidence 4578999999876 678999999999988763 23445566777777776654
No 44
>2k75_A Uncharacterized protein TA0387; closed beta barrel, OB fold, structural genomics, PSI-2, protein structure initiative; NMR {Thermoplasma acidophilum}
Probab=53.76 E-value=11 Score=28.14 Aligned_cols=25 Identities=16% Similarity=0.315 Sum_probs=22.3
Q ss_pred eEEEEEechhHHHHHhhcCCCCeEEEE-EEeee
Q 027559 57 SILLAVGGDMAQLCQKHLKPNDFIYVT-GQLHS 88 (222)
Q Consensus 57 wI~Vv~WGklAE~~aqyLkKGD~V~Vs-GrL~s 88 (222)
-|++++|++. +++||.|.|. |+...
T Consensus 50 ~I~~tlW~~~-------l~~Gdvv~i~ng~v~~ 75 (106)
T 2k75_A 50 RIRISSFGKQ-------LQDSDVVRIDNARVAQ 75 (106)
T ss_dssp EEEEEEESSC-------CCTTEEEEEEEEEEEE
T ss_pred eEEEEEEcCc-------cCCCCEEEEEeeEEeE
Confidence 5899999998 9999999999 77765
No 45
>2pi2_A Replication protein A 32 kDa subunit; FULL-length RPA14/32, ssDNA binding protein, OB-fold, dioxan replication, DNA binding protein; 2.00A {Homo sapiens} SCOP: b.40.4.3 PDB: 2z6k_A 1dpu_A 1z1d_A
Probab=53.39 E-value=37 Score=29.10 Aligned_cols=50 Identities=16% Similarity=0.224 Sum_probs=33.0
Q ss_pred eEEEEEechhHHH--HHhhcCCCCeEEEEEEeeeccccCCCCceEEEEEEEEeeEEeeecC
Q 027559 57 SILLAVGGDMAQL--CQKHLKPNDFIYVTGQLHSYSKVDKNGKLCLCYKVVVEDFNYVREC 115 (222)
Q Consensus 57 wI~Vv~WGklAE~--~aqyLkKGD~V~VsGrL~sr~~~dkdGq~rs~~eVvV~el~Fv~~k 115 (222)
-|+|.+|....+. -...++.|+.|.|.|+++... |+ .+|.+..+.-+...
T Consensus 101 ~I~~k~W~~~~~~~~~~~~~~~G~yVrV~G~v~~f~-----g~----~qi~i~~ir~v~d~ 152 (270)
T 2pi2_A 101 PMDVRQWVDTDDTSSENTVVPPETYVKVAGHLRSFQ-----NK----KSLVAFKIMPLEDM 152 (270)
T ss_dssp CEEEEEECC-------CCCCCTTCEEEEEEEEEEET-----TE----EEEEEEEEEECSCT
T ss_pred EEEEEEEcCcCcccchhhcCCCCCEEEEEEEEEecC-----Ce----eEEEEEEEEecCCH
Confidence 5789999875432 345689999999999999742 33 35666666666543
No 46
>1c0a_A Aspartyl tRNA synthetase; protein-RNA complex, ligase/RNA complex; HET: 4SU H2U QUO G7M 5MU PSU AMP AMO; 2.40A {Escherichia coli} SCOP: b.40.4.1 d.74.4.1 d.104.1.1 PDB: 1il2_A* 1eqr_A*
Probab=51.58 E-value=52 Score=31.61 Aligned_cols=55 Identities=16% Similarity=0.258 Sum_probs=39.2
Q ss_pred eEEEEEechhHHH--HHhhcCCCCeEEEEEEeeecccc--C---CCCceEEEEEEEEeeEEeeecC
Q 027559 57 SILLAVGGDMAQL--CQKHLKPNDFIYVTGQLHSYSKV--D---KNGKLCLCYKVVVEDFNYVREC 115 (222)
Q Consensus 57 wI~Vv~WGklAE~--~aqyLkKGD~V~VsGrL~sr~~~--d---kdGq~rs~~eVvV~el~Fv~~k 115 (222)
.|+|++-.+..+. .++.|+.||.|.|+|.+..+.-. + +.|+ +||.|+++..+...
T Consensus 44 ~iQvv~~~~~~~~~~~~~~l~~e~~V~V~G~v~~~~~~~~n~~~~~ge----iEl~~~~i~vl~~a 105 (585)
T 1c0a_A 44 IVQVFFDPDRADALKLASELRNEFCIQVTGTVRARDEKNINRDMATGE----IEVLASSLTIINRA 105 (585)
T ss_dssp EEEEEECGGGHHHHHHHTTCCTTCEEEEEEEEEECCTTTCCTTSTTTT----EEEEEEEEEEEECC
T ss_pred eEEEEEeCCchHHHHHHhcCCCCCEEEEEeEEEccCcccccccCCCcc----EEEEEeEEEEEecc
Confidence 4788885543332 34679999999999999876321 1 2354 89999999999854
No 47
>3bju_A Lysyl-tRNA synthetase; aminoacyl-tRNA synthetase, ATP- binding, cytoplasm, ligase, nucleotide-binding, phosphoprotein, polymorphism; HET: LYS ATP; 2.31A {Homo sapiens}
Probab=51.38 E-value=45 Score=31.66 Aligned_cols=52 Identities=13% Similarity=0.276 Sum_probs=37.8
Q ss_pred eeEEEEEechhH---H---HHHhhcCCCCeEEEEEEeeeccccCCCCceEEEEEEEEeeEEeeecC
Q 027559 56 SSILLAVGGDMA---Q---LCQKHLKPNDFIYVTGQLHSYSKVDKNGKLCLCYKVVVEDFNYVREC 115 (222)
Q Consensus 56 ~wI~Vv~WGklA---E---~~aqyLkKGD~V~VsGrL~sr~~~dkdGq~rs~~eVvV~el~Fv~~k 115 (222)
-.|+|++-.+.. + .+.+.|..||.|.|+|.+.... .|+ ++|.|+++..+...
T Consensus 84 g~iQvv~~~~~~~~~~~~~~~~~~l~~gd~V~V~G~v~~t~----~ge----~ei~~~~i~~l~~~ 141 (521)
T 3bju_A 84 VKLQVMANSRNYKSEEEFIHINNKLRRGDIIGVQGNPGKTK----KGE----LSIIPYEITLLSPC 141 (521)
T ss_dssp EEEEEEEEGGGSSCHHHHHHHHHHCCTTCEEEEEEEEEECT----TCC----EEEEEEEEEEEECC
T ss_pred EEEEEEEECCccCCHHHHHHHHhcCCCCCEEEEEEEEEecC----CCC----EEEEEeEEEEeecC
Confidence 357788754321 2 2345799999999999998653 453 89999999999854
No 48
>3au7_A TIAS, putative uncharacterized protein; ATP hydrolysis, RNA binding protein; 2.60A {Archaeoglobus fulgidus} PDB: 3amt_A* 3amu_A*
Probab=51.30 E-value=32 Score=32.03 Aligned_cols=47 Identities=17% Similarity=0.198 Sum_probs=35.9
Q ss_pred eeeEEEEEec--hhHHHHHhhcCCCCeEEEEEEeeeccccCCCCceEEEEEEEEeeEEeeec
Q 027559 55 LSSILLAVGG--DMAQLCQKHLKPNDFIYVTGQLHSYSKVDKNGKLCLCYKVVVEDFNYVRE 114 (222)
Q Consensus 55 t~wI~Vv~WG--klAE~~aqyLkKGD~V~VsGrL~sr~~~dkdGq~rs~~eVvV~el~Fv~~ 114 (222)
..-|+|++|. +-...++..|..||.|.|.|.++. | .+.++.++.+.-
T Consensus 313 ~~~i~c~ayeptk~fr~~vr~L~~GD~V~v~G~v~~-------g------tLnvEk~~v~~l 361 (402)
T 3au7_A 313 FGSVKCAAFEPTKQFRNVIRLLRKGDVVEVYGSMKK-------D------TINLEKIQIVEL 361 (402)
T ss_dssp TEEEEEEECGGGTTHHHHHTTCCTTCEEEEEEEEET-------T------EEEEEEEEEEEC
T ss_pred CCEEEEEEEccchHHHHHHhcCCCCCEEEEEEeecC-------C------EEEEEEEEEccc
Confidence 4458999999 556667778999999999999653 4 566777776654
No 49
>3a74_A Lysyl-tRNA synthetase; aminoacyl tRNA synthetase, ligase, protein biosynthesis, AMI tRNA synthetase, ATP-binding, magnesium; HET: B4P LYN; 1.80A {Geobacillus stearothermophilus} PDB: 3e9h_A* 3e9i_A*
Probab=48.32 E-value=56 Score=30.78 Aligned_cols=51 Identities=20% Similarity=0.315 Sum_probs=37.8
Q ss_pred eEEEEEech-hHH---HHHhhcCCCCeEEEEEEeeeccccCCCCceEEEEEEEEeeEEeeecC
Q 027559 57 SILLAVGGD-MAQ---LCQKHLKPNDFIYVTGQLHSYSKVDKNGKLCLCYKVVVEDFNYVREC 115 (222)
Q Consensus 57 wI~Vv~WGk-lAE---~~aqyLkKGD~V~VsGrL~sr~~~dkdGq~rs~~eVvV~el~Fv~~k 115 (222)
.|+|++-.+ +.+ ..++.|..||.|.|+|.+... +.|+ ++|.|+++..+...
T Consensus 85 ~iQvv~~~~~~~~~~~~~~~~l~~g~~v~V~G~v~~~----~~ge----~ei~~~~i~vl~~~ 139 (493)
T 3a74_A 85 QIQIYVRQDDVGEQQYELFKISDLGDIVGVRGTMFKT----KVGE----LSIKVSSYEFLTKA 139 (493)
T ss_dssp EEEEEEEHHHHHHHHHHHHHHCCTTCEEEEEEEEEEC----TTCC----EEEEEEEEEEEECC
T ss_pred eEEEEEECCcCCHHHHHHHhcCCCCCEEEEEEEEEeC----CCCc----EEEEEEEEEEcccc
Confidence 578888544 222 133679999999999999864 3453 89999999999864
No 50
>3kf6_A Protein STN1; OB fold, chromosomal protein, DNA-binding, nucleus, telomere; 1.65A {Schizosaccharomyces pombe}
Probab=47.37 E-value=1.1e+02 Score=24.59 Aligned_cols=53 Identities=11% Similarity=0.205 Sum_probs=38.4
Q ss_pred eeeeEEEEEechh-H--HHHHhhcCCCCeEEEEEEeeeccccCCCCceEEEEEEEEeeEEeeecC
Q 027559 54 CLSSILLAVGGDM-A--QLCQKHLKPNDFIYVTGQLHSYSKVDKNGKLCLCYKVVVEDFNYVREC 115 (222)
Q Consensus 54 ~t~wI~Vv~WGkl-A--E~~aqyLkKGD~V~VsGrL~sr~~~dkdGq~rs~~eVvV~el~Fv~~k 115 (222)
...-|+|++|-+. + ......+..|+.|.|.|+|++.. |+ -+|.|+.+..++..
T Consensus 74 TG~~I~cv~w~~~~~~~~~~~~~l~~G~~VrV~G~v~~fr-----~~----rqI~~~~i~~v~d~ 129 (159)
T 3kf6_A 74 SGMVLRVVFIIQDDFSMSKRAISMSPGNVVCVFGKINSFR-----SE----VELIAQSFEELRDP 129 (159)
T ss_dssp SSCEEEEEEEGGGCHHHHHHHTTCCTTCEEEEEEEEECSS-----SS----CEEEEEEEEEECST
T ss_pred CCCeEEEEEEccCCCCcccccccCCCCCEEEEEEEEEeeC-----CE----EEEEEEEEEECCCc
Confidence 3346899999886 2 22344588999999999998742 33 37788888888754
No 51
>3nem_A Aspartyl-tRNA synthetase; rossmann fold, OB fold, ligase; HET: AMO ATP; 1.89A {Thermococcus kodakarensis} PDB: 3nel_A* 3nen_A 1b8a_A*
Probab=44.62 E-value=78 Score=29.29 Aligned_cols=53 Identities=11% Similarity=0.186 Sum_probs=38.3
Q ss_pred eEEEEEechh--HH--HHHhhcCCCCeEEEEEEeeeccccCCCCceEEEEEEEEeeEEeeecC
Q 027559 57 SILLAVGGDM--AQ--LCQKHLKPNDFIYVTGQLHSYSKVDKNGKLCLCYKVVVEDFNYVREC 115 (222)
Q Consensus 57 wI~Vv~WGkl--AE--~~aqyLkKGD~V~VsGrL~sr~~~dkdGq~rs~~eVvV~el~Fv~~k 115 (222)
.|+|++-.+. .+ ..++.|+.||.|.|+|.+....- ..|. ++|.|+++..+...
T Consensus 45 ~iQ~v~~~~~~~~~~~~~~~~l~~~~~V~V~G~v~~~~~--~~~~----~el~~~~i~vl~~~ 101 (438)
T 3nem_A 45 IVQITAPKKKVDPELFKLIPKLRSEDVVAVEGVVNFTPK--AKLG----FEILPEKIVVLNRA 101 (438)
T ss_dssp EEEEEEETTTSCHHHHHHGGGCCTTCEEEEEEEEEECTT--STTS----EEEEEEEEEEEECB
T ss_pred eEEEEEeCCcCCHHHHHHHhcCCCCCEEEEEEEEEeCCC--CCCc----EEEEEEEEEEEecC
Confidence 4788886553 11 23567999999999999976431 2243 89999999999864
No 52
>4ex5_A Lysine--tRNA ligase; structural genomics, niaid, national institute of allergy AN infectious diseases; HET: LYS; 2.40A {Burkholderia thailandensis}
Probab=43.66 E-value=75 Score=30.39 Aligned_cols=51 Identities=16% Similarity=0.186 Sum_probs=37.0
Q ss_pred eEEEEEechh-H-H--HHHhhcCCCCeEEEEEEeeeccccCCCCceEEEEEEEEeeEEeeecC
Q 027559 57 SILLAVGGDM-A-Q--LCQKHLKPNDFIYVTGQLHSYSKVDKNGKLCLCYKVVVEDFNYVREC 115 (222)
Q Consensus 57 wI~Vv~WGkl-A-E--~~aqyLkKGD~V~VsGrL~sr~~~dkdGq~rs~~eVvV~el~Fv~~k 115 (222)
-|+|++-.+. . + ...+.|..||.|.|+|.+... +.|+ ++|.|+++..+...
T Consensus 115 ~iQvv~~~~~~~~~~~~~~~~l~~gd~V~V~G~v~~t----~~ge----lel~~~~i~vLs~a 169 (529)
T 4ex5_A 115 QIQFFVTPADVGAETYDAFKKWDLGDIVAARGVLFRT----NKGE----LSVKCTQLRLLAKA 169 (529)
T ss_dssp EEEEEECHHHHCHHHHHHHHTCCTTCEEEEEEEEEEC----TTSC----EEEEEEEEEEEECC
T ss_pred eEEEEEECCcCCHHHHHHHhcCCCCCEEEEEEEEEEc----CCCc----EEEEEEEEEEEecC
Confidence 5677775442 1 1 234569999999999999752 3453 89999999999864
No 53
>1l0w_A Aspartyl-tRNA synthetase; space-grown crystal, dimeric enzyme, flexible domains, ligase; 2.01A {Thermus thermophilus} SCOP: b.40.4.1 d.74.4.1 d.104.1.1 PDB: 1efw_A* 1g51_A
Probab=42.93 E-value=27 Score=33.64 Aligned_cols=55 Identities=13% Similarity=0.209 Sum_probs=38.6
Q ss_pred eEEEEEechh-HHHHHhhcCCCCeEEEEEEeeeccccC---CCCceEEEEEEEEeeEEeeecC
Q 027559 57 SILLAVGGDM-AQLCQKHLKPNDFIYVTGQLHSYSKVD---KNGKLCLCYKVVVEDFNYVREC 115 (222)
Q Consensus 57 wI~Vv~WGkl-AE~~aqyLkKGD~V~VsGrL~sr~~~d---kdGq~rs~~eVvV~el~Fv~~k 115 (222)
.|+|++-.+. +-..++.|+.||.|.|+|.+..+.-.+ +.|+ +||.|+++..+...
T Consensus 45 ~iQvv~~~~~~~~~~~~~l~~e~~V~V~G~v~~~~~~~~~~~~ge----~Ei~~~~i~vl~~a 103 (580)
T 1l0w_A 45 LVQLVAHPASPAYATAERVRPEWVVRAKGLVRLRPEPNPRLATGR----VEVELSALEVLAEA 103 (580)
T ss_dssp EEEEEECTTSTTHHHHTTCCTTCEEEEEEEEEECSSCCTTSTTTT----EEEEEEEEEEEECC
T ss_pred eEEEEEeCChhHHHHHhcCCCCcEEEEEEEEEcCCCcCccCCCcc----EEEEEeEEEEeccC
Confidence 4778875442 112346799999999999998765111 2343 89999999999864
No 54
>4gop_C Putative uncharacterized protein; OB fold, ssDNA binding, DNA binding protein-DNA complex; HET: DNA; 3.10A {Ustilago maydis}
Probab=40.65 E-value=18 Score=32.92 Aligned_cols=29 Identities=14% Similarity=0.038 Sum_probs=27.3
Q ss_pred eEEEEEechhHHHHHhhcCCCCeEEEEEE
Q 027559 57 SILLAVGGDMAQLCQKHLKPNDFIYVTGQ 85 (222)
Q Consensus 57 wI~Vv~WGklAE~~aqyLkKGD~V~VsGr 85 (222)
-|.+++|+++|+.+...|+.|+.++|++-
T Consensus 51 ~I~at~~~~~~~~f~~~l~eG~vy~Is~~ 79 (444)
T 4gop_C 51 EIKATGFNDAVDRFYPLLQENHVYLISKA 79 (444)
T ss_dssp EEEEEEETHHHHHHTTTCCTTCEEEEESC
T ss_pred EEEEEEeHHHHHHHHHheecCCEEEEcCC
Confidence 68999999999999999999999999984
No 55
>1e1o_A Lysyl-tRNA synthetase, heat inducible; ligase, aminoacyl-tRNA synthetase, protein biosynthesis; HET: LYS; 2.12A {Escherichia coli} SCOP: b.40.4.1 d.104.1.1 PDB: 1e1t_A* 1e22_A* 1e24_A* 1lyl_A 1bbu_A* 1bbw_A 1krs_A 1krt_A
Probab=40.23 E-value=70 Score=30.23 Aligned_cols=51 Identities=20% Similarity=0.242 Sum_probs=37.5
Q ss_pred eEEEEEech-hH-H--H-HHhhcCCCCeEEEEEEeeeccccCCCCceEEEEEEEEeeEEeeecC
Q 027559 57 SILLAVGGD-MA-Q--L-CQKHLKPNDFIYVTGQLHSYSKVDKNGKLCLCYKVVVEDFNYVREC 115 (222)
Q Consensus 57 wI~Vv~WGk-lA-E--~-~aqyLkKGD~V~VsGrL~sr~~~dkdGq~rs~~eVvV~el~Fv~~k 115 (222)
.|+|++-.+ +. + . .++.|..||.|.|+|.+... +.| .++|.|+++..+...
T Consensus 93 ~iQvv~~~~~~~~~~~~~~~~~l~~g~~V~V~G~v~~~----~~g----e~ei~~~~i~vl~~a 148 (504)
T 1e1o_A 93 RIQLYVARDSLPEGVYNDQFKKWDLGDIIGARGTLFKT----QTG----ELSIHCTELRLLTKA 148 (504)
T ss_dssp EEEEEEETTTSSTTHHHHTGGGCCTTCEEEEEEEEEEC----TTC----CEEEEEEEEEEEECC
T ss_pred eEEEEEECCcCCHHHHHHHHhcCCCCCEEEEEEEEEec----CCc----eEEEEEEEEEEeccc
Confidence 578887543 21 1 1 34679999999999999864 345 389999999999864
No 56
>3m4p_A Ehasnrs, asparaginyl-tRNA synthetase, putative; aminoacyl-tRNA synthetase, tRNA ligase, AARS, translation, ATP-binding, nucleotide-binding; HET: 4AD; 2.83A {Entamoeba histolytica} PDB: 3m4q_A
Probab=39.57 E-value=55 Score=30.49 Aligned_cols=60 Identities=17% Similarity=0.205 Sum_probs=38.1
Q ss_pred eEEEEEec-hhHH-HHHhhcCCCCeEEEEEEeeeccccCCCC--ceEEEEEEEEeeEEeeecCC
Q 027559 57 SILLAVGG-DMAQ-LCQKHLKPNDFIYVTGQLHSYSKVDKNG--KLCLCYKVVVEDFNYVRECG 116 (222)
Q Consensus 57 wI~Vv~WG-klAE-~~aqyLkKGD~V~VsGrL~sr~~~dkdG--q~rs~~eVvV~el~Fv~~k~ 116 (222)
.|+|++-. ++.+ ..+..|..||.|.|+|.+....-....- ...-.+||.|++++.+....
T Consensus 60 ~iQvv~~~~~~~~~~~~~~l~~g~~V~V~G~v~~~~~~~~~~~~~t~g~~El~~~~i~vl~~a~ 123 (456)
T 3m4p_A 60 YCQCVIFGKELCEPEKVKLLTRECSLEITGRLNAYAGKNHPPEIADILNLEMQVTEWKVIGESP 123 (456)
T ss_dssp EEEEEEESTTTTCHHHHTTCCTTCEEEEEEEEECCCSSSCCCSCTTBCSSEEEEEEEEEEECCC
T ss_pred cEEEEEecccchhhHHhhcCCCccEEEEEeEEEecCCcccCcccCCCCcEEEEEeEEEEEecCC
Confidence 47888866 3322 1245799999999999997643111110 00023799999999998643
No 57
>2hpi_A DNA polymerase III alpha subunit; POL-beta-like nucleotidyltransferase fold, transferase; HET: DNA; 3.00A {Thermus aquaticus} PDB: 2hpm_A* 3e0d_A*
Probab=39.28 E-value=19 Score=38.01 Aligned_cols=48 Identities=15% Similarity=0.105 Sum_probs=25.6
Q ss_pred eEEEEEechhHHHHHhhcCCCCeEEEEEEeeeccccCCCCceEEEEEEEEeeEEeeec
Q 027559 57 SILLAVGGDMAQLCQKHLKPNDFIYVTGQLHSYSKVDKNGKLCLCYKVVVEDFNYVRE 114 (222)
Q Consensus 57 wI~Vv~WGklAE~~aqyLkKGD~V~VsGrL~sr~~~dkdGq~rs~~eVvV~el~Fv~~ 114 (222)
-++|++|.+.-+.+...|..|..|.|.|+++.+ + .++|+|+++.-+..
T Consensus 1076 ~~evvvf~~~~~~~~~~l~~~~~~~v~G~v~~~------~----~~~l~~~~i~~l~~ 1123 (1220)
T 2hpi_A 1076 ALEVVVFGRAYEGVSPKLKEDIPLLVLAEVEKG------E----ELRVLAQAVWTLEE 1123 (1220)
T ss_dssp EEEEC-------------CTTCEEEEEEEEC---------------CEEEEEEEEHHH
T ss_pred CEEEEEcHHHHHHHHHHhccCCEEEEEEEEEEC------C----CcEEEEeeeecHHH
Confidence 378999999999999999999999999999842 1 26788888876643
No 58
>1x54_A Asparaginyl-tRNA synthetase; aminoacyl-tRNA synthetase, riken structural genomics/proteom initiative, RSGI, structural genomics, ligase; HET: 4AD; 1.45A {Pyrococcus horikoshii} PDB: 1x55_A* 1x56_A
Probab=39.27 E-value=90 Score=28.71 Aligned_cols=53 Identities=17% Similarity=0.212 Sum_probs=37.5
Q ss_pred eEEEEEechh----HHHHHhhcCCCCeEEEEEEeeeccccCCCCceEEEEEEEEeeEEeeecC
Q 027559 57 SILLAVGGDM----AQLCQKHLKPNDFIYVTGQLHSYSKVDKNGKLCLCYKVVVEDFNYVREC 115 (222)
Q Consensus 57 wI~Vv~WGkl----AE~~aqyLkKGD~V~VsGrL~sr~~~dkdGq~rs~~eVvV~el~Fv~~k 115 (222)
.|+|++-.+. +-..++.|+.||.|.|+|.+....- ..| .++|.|+++..+...
T Consensus 45 ~iQ~v~~~~~~~~~~~~~~~~l~~~~~v~v~G~v~~~~~--~~~----~~el~~~~~~vl~~~ 101 (434)
T 1x54_A 45 IVQAVVAKNVVGEETFEKAKKLGRESSVIVEGIVKADER--APG----GAEVHVEKLEVIQAV 101 (434)
T ss_dssp EEEEEECHHHHCHHHHHHHHTCCTTCEEEEEEEEEECTT--SGG----GEEEEEEEEEEEECC
T ss_pred EEEEEEECCcCCHHHHHHHhcCCCCCEEEEEEEEEecCC--CCc----cEEEEEeEEEEeecC
Confidence 3788885432 1123367999999999999987541 112 389999999999864
No 59
>1jmc_A Protein (replication protein A (RPA)); human ssDNA binding replication protein A(RPA), single stranded DNA-binding protein, protein-ssDNA complex; HET: DNA; 2.40A {Homo sapiens} SCOP: b.40.4.3 b.40.4.3 PDB: 1fgu_A
Probab=38.38 E-value=20 Score=29.57 Aligned_cols=27 Identities=11% Similarity=0.134 Sum_probs=21.3
Q ss_pred eEEEEEechhHHHHHhhcCCCCeEEEEEE
Q 027559 57 SILLAVGGDMAQLCQKHLKPNDFIYVTGQ 85 (222)
Q Consensus 57 wI~Vv~WGklAE~~aqyLkKGD~V~VsGr 85 (222)
-|.|++||+.|+.+. ...|+-|.+.|-
T Consensus 179 ~i~~tLWg~~a~~~~--~~~~~vv~i~~~ 205 (246)
T 1jmc_A 179 VVTATLWGEDADKFD--GSRQPVLAIKGA 205 (246)
T ss_dssp EEEEEEEHHHHHHCC--CTTCCEEEEEEE
T ss_pred EEEEEEEchhhhhcc--cCCCCEEEEEEE
Confidence 479999999999764 577887777664
No 60
>1wyd_A Hypothetical aspartyl-tRNA synthetase; archaea, LIGA; HET: EPE; 2.30A {Sulfolobus tokodaii}
Probab=37.98 E-value=72 Score=29.39 Aligned_cols=52 Identities=12% Similarity=0.165 Sum_probs=37.4
Q ss_pred eEEEEEech--hHHHHHhhcCCCCeEEEEEEeeeccccCCCCceEEEEEEEEeeEEeeecC
Q 027559 57 SILLAVGGD--MAQLCQKHLKPNDFIYVTGQLHSYSKVDKNGKLCLCYKVVVEDFNYVREC 115 (222)
Q Consensus 57 wI~Vv~WGk--lAE~~aqyLkKGD~V~VsGrL~sr~~~dkdGq~rs~~eVvV~el~Fv~~k 115 (222)
.|+|++-.+ .-+. ++.|+.||.|.|+|.+....- ..| .++|.|+++..+...
T Consensus 45 ~iQ~v~~~~~~~~~~-~~~l~~~~~v~v~G~v~~~~~--~~~----~~el~~~~~~vl~~~ 98 (429)
T 1wyd_A 45 LGQVVVDKNSSAFGI-SQELTQESVIQVRGIVKADKR--APR----GIELHAEEITLLSKA 98 (429)
T ss_dssp EEEEEECTTSTTHHH-HTTCCTTCEEEEEEEEEECSS--SGG----GEEEEEEEEEEEECC
T ss_pred eEEEEEeCChHHHHH-HHhCCCCCEEEEEEEEEecCC--CCc----cEEEEEeEEEEeccC
Confidence 378887543 2233 367999999999999986531 112 389999999999864
No 61
>1n9w_A Aspartyl-tRNA synthetase 2; biosynthetic protein; 2.30A {Thermus thermophilus} SCOP: b.40.4.1 d.104.1.1 PDB: 3kfu_A*
Probab=36.49 E-value=87 Score=28.74 Aligned_cols=45 Identities=20% Similarity=0.366 Sum_probs=34.8
Q ss_pred EEEEEechhHHHHHhhcC-CCCeEEEEEEeeeccccCCCCceEEEEEEEEeeEEeeecC
Q 027559 58 ILLAVGGDMAQLCQKHLK-PNDFIYVTGQLHSYSKVDKNGKLCLCYKVVVEDFNYVREC 115 (222)
Q Consensus 58 I~Vv~WGklAE~~aqyLk-KGD~V~VsGrL~sr~~~dkdGq~rs~~eVvV~el~Fv~~k 115 (222)
|+|++-. +.|+ .||.|.|+|.+....- ..| .++|.|+++..+...
T Consensus 43 iQ~v~~~-------~~l~~~~~~v~v~G~v~~~~~--~~~----~~el~~~~~~vl~~~ 88 (422)
T 1n9w_A 43 VQVVTGG-------LKLPLPESALRVRGLVVENAK--APG----GLEVQAKEVEVLSPA 88 (422)
T ss_dssp EEEEEES-------CCCCCTTCEEEEEEEEEECTT--STT----SEEEEEEEEEEEECC
T ss_pred EEEEEEc-------cccCCCCCEEEEEEEEEecCC--CCc----cEEEEEeEEEEeccC
Confidence 7777743 6799 9999999999987541 123 389999999999864
No 62
>3i7f_A Aspartyl-tRNA synthetase; tRNA ligase, APO, ATP-binding, aminoacyl-tRNA synthetase, LI nucleotide-binding, protein biosynthesis; 2.80A {Entamoeba histolytica}
Probab=34.46 E-value=78 Score=30.46 Aligned_cols=57 Identities=12% Similarity=0.061 Sum_probs=39.0
Q ss_pred eEEEEEec------hhHHHHHhhcCCCCeEEEEEEeeeccccCCCCceEEEEEEEEeeEEeeecC
Q 027559 57 SILLAVGG------DMAQLCQKHLKPNDFIYVTGQLHSYSKVDKNGKLCLCYKVVVEDFNYVREC 115 (222)
Q Consensus 57 wI~Vv~WG------klAE~~aqyLkKGD~V~VsGrL~sr~~~dkdGq~rs~~eVvV~el~Fv~~k 115 (222)
.|+|++-. .+.+ .++.|..|+.|.|+|.+....-..+ +.+.-.+||.|+++..|...
T Consensus 91 ~iQ~v~~~~~~~~~~~~~-~~~~l~~es~V~V~G~v~~~~~~~~-~~~~~~~El~~~~i~vls~a 153 (548)
T 3i7f_A 91 TCQALVMKSETISKEFVQ-FCQKISAESICDITGIVKAVEKPIE-KATQQDVEIHVTSIAVVSLA 153 (548)
T ss_dssp EEEEEEECSSSSCHHHHH-HHHTCCTTEEEEEEEEEEECSSCCT-TSSSCSEEEEEEEEEEEECC
T ss_pred eEEEEEECCCccCHHHHH-HHhCCCCCCEEEEEEEEEeCCcccc-cCCCCcEEEEEeEEEEEecC
Confidence 57787764 1222 3567999999999999987542211 12223489999999999865
No 63
>1wjj_A Hypothetical protein F20O9.120; DNA-binding protein-related, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Arabidopsis thaliana} SCOP: b.40.4.3
Probab=34.40 E-value=37 Score=27.16 Aligned_cols=29 Identities=17% Similarity=0.266 Sum_probs=23.2
Q ss_pred eeeeEEEEEechhHHHHHhhcCCCCeEEEEEEe
Q 027559 54 CLSSILLAVGGDMAQLCQKHLKPNDFIYVTGQL 86 (222)
Q Consensus 54 ~t~wI~Vv~WGklAE~~aqyLkKGD~V~VsGrL 86 (222)
+|=-|.+++|++.|+ .++.||.|.|.+-.
T Consensus 71 eTG~I~ftlW~e~~~----~l~~Gd~v~i~na~ 99 (145)
T 1wjj_A 71 ETGCILFTARNDQVD----LMKPGATVILRNSR 99 (145)
T ss_dssp SSCEEEEEECTTHHH----HTCTTCEEEEEEEE
T ss_pred CCcEEEEEEecCCcC----cCCCCCEEEEeccE
Confidence 444689999999876 48899999998743
No 64
>4ah6_A Aspartate--tRNA ligase, mitochondrial; 3.70A {Homo sapiens}
Probab=34.14 E-value=54 Score=32.03 Aligned_cols=56 Identities=13% Similarity=0.167 Sum_probs=39.2
Q ss_pred eEEEEEechh----HHHHHhhcCCCCeEEEEEEeeecccc-----CCCCceEEEEEEEEeeEEeeecCC
Q 027559 57 SILLAVGGDM----AQLCQKHLKPNDFIYVTGQLHSYSKV-----DKNGKLCLCYKVVVEDFNYVRECG 116 (222)
Q Consensus 57 wI~Vv~WGkl----AE~~aqyLkKGD~V~VsGrL~sr~~~-----dkdGq~rs~~eVvV~el~Fv~~k~ 116 (222)
.|+|++-.+. +...++.|..|+.|.|+|.+..+.-. .+.|+ +||.|++++.+....
T Consensus 50 ~iQvv~~~~~~~~~~~~~~~~l~~e~~V~V~G~v~~~~~~~~n~~~~tge----iEl~~~~i~vL~~a~ 114 (617)
T 4ah6_A 50 LVQVIIPQDESAASVKKILCEAPVESVVQVSGTVISRPAGQENPKMPTGE----IEIKVKTAELLNACK 114 (617)
T ss_dssp EEEEECCCSSSSHHHHHHHHHCCSSCEEEEEEEEEECSTTCCCTTSTTTT----EEEEEEEEEEEECBC
T ss_pred CEEEEEeCCcCcHHHHHHHhcCCCCCEEEEEEEEEeCCccccCccCCCCc----EEEEEeEEEEeecCC
Confidence 5677775442 12345679999999999999875421 12344 899999999997653
No 65
>2xgt_A Asparaginyl-tRNA synthetase, cytoplasmic; ligase, ATP-binding, protein biosynthesis; HET: NSS; 1.90A {Brugia malayi} PDB: 2xti_A*
Probab=31.86 E-value=1.2e+02 Score=27.94 Aligned_cols=54 Identities=7% Similarity=0.102 Sum_probs=36.0
Q ss_pred eEEEEEechhHHH-HHhhcCCCCeEEEEEEeeeccccCCCCc-eEEEEEEEEeeEEeeec
Q 027559 57 SILLAVGGDMAQL-CQKHLKPNDFIYVTGQLHSYSKVDKNGK-LCLCYKVVVEDFNYVRE 114 (222)
Q Consensus 57 wI~Vv~WGklAE~-~aqyLkKGD~V~VsGrL~sr~~~dkdGq-~rs~~eVvV~el~Fv~~ 114 (222)
.|+|++-.++++. ....|..||.|.|+|.+..+. .|. ..-.+||.|+++..+..
T Consensus 41 ~iQvv~~~~~~~~~~~~~l~~~~~v~v~G~v~~~~----~~~~~~g~~El~~~~~~vl~~ 96 (435)
T 2xgt_A 41 FLQVLLMDKLCQTYDALTVNTECTVEIYGAIKEVP----EGKEAPNGHELIADFWKIIGN 96 (435)
T ss_dssp EEEEEEEGGGGSSHHHHHCCTTCEEEEEEEEEECC----------TTEEEEEEEEEEEEC
T ss_pred eEEEEECCcchhHHHHhcCCCCCEEEEEEEEEecC----CCcCCCCcEEEEEEEEEEeec
Confidence 4788876554321 112699999999999998743 111 11238999999999985
No 66
>2kbn_A Conserved protein; nucleic acid binding protein, beta barrel, structural genomics, PSI-2, protein structure initiative; NMR {Methanosarcina mazei} PDB: 2ken_A
Probab=31.06 E-value=38 Score=25.15 Aligned_cols=31 Identities=10% Similarity=0.059 Sum_probs=24.0
Q ss_pred eeEEEEEechhHHHHHhhcCCCCeEEEE-EEeeec
Q 027559 56 SSILLAVGGDMAQLCQKHLKPNDFIYVT-GQLHSY 89 (222)
Q Consensus 56 ~wI~Vv~WGklAE~~aqyLkKGD~V~Vs-GrL~sr 89 (222)
=-|++++|++- .+..++.|+.|.|. |+...+
T Consensus 46 G~I~~t~W~~~---~~~~~~~G~~V~i~n~~v~~~ 77 (109)
T 2kbn_A 46 GIIKFTIWKNA---ELPLLEQGESYLLRSVVVGEY 77 (109)
T ss_dssp CCEEEEEEGGG---CCCCCCTTCEEEEEEEEEEEE
T ss_pred CeEEEEEECcc---cccccCCCCEEEEEEEEEEEE
Confidence 35899999943 23579999999999 677653
No 67
>4hsp_A Hypothetical protein; PF11736 family protein, DUF3299, structural genomics, joint for structural genomics, JCSG; HET: MSE; 2.45A {Pseudomonas aeruginosa}
Probab=27.32 E-value=61 Score=26.28 Aligned_cols=33 Identities=9% Similarity=0.142 Sum_probs=25.1
Q ss_pred CeEEEEEEeeeccccCCCCceEEEEEEEEeeEEee
Q 027559 78 DFIYVTGQLHSYSKVDKNGKLCLCYKVVVEDFNYV 112 (222)
Q Consensus 78 D~V~VsGrL~sr~~~dkdGq~rs~~eVvV~el~Fv 112 (222)
+.|.|+|+|++...++.-|. +.|.+.++.|+--
T Consensus 113 ~pvwV~G~L~~~~~~~~l~~--~~Y~m~a~~i~~y 145 (150)
T 4hsp_A 113 QPFWVEGTFKVENASSELAA--AGYRMQASKVTPY 145 (150)
T ss_dssp SCEEEEEEEECCCEECSSCE--ESEEEEEEEEEEC
T ss_pred ceEEEEEEEEEeeeccccee--EEeEEeeeEEEEe
Confidence 78999999999998754444 6677777777543
No 68
>1j3a_A 50S ribosomal protein L13P; rRNA binding, ribosomal assembly, ribosome; 1.60A {Pyrococcus horikoshii} SCOP: c.21.1.1
Probab=23.96 E-value=32 Score=27.49 Aligned_cols=20 Identities=20% Similarity=0.283 Sum_probs=17.7
Q ss_pred chhHHHHHhhcCCCCeEEEE
Q 027559 64 GDMAQLCQKHLKPNDFIYVT 83 (222)
Q Consensus 64 GklAE~~aqyLkKGD~V~Vs 83 (222)
|+||-.+|..|.-||.|.|.
T Consensus 12 GRLAs~vAk~L~~Gd~VVVi 31 (142)
T 1j3a_A 12 GRLASRVAKMLLEGEEVVIV 31 (142)
T ss_dssp HHHHHHHHHHHHTTCCEEEE
T ss_pred HHHHHHHHHHHhcCCEEEEE
Confidence 89999999999988888774
No 69
>1vq8_J 50S ribosomal protein L13P; ribosome 50S, protein-protein complex, RNA-RNA complex, PROT complex, peptidyl transferase reaction; HET: 1MA OMU OMG UR3 PSU SPS; 2.20A {Haloarcula marismortui} SCOP: c.21.1.1 PDB: 1giy_M 1jj2_I 1k73_K* 1k8a_K* 1k9m_K* 1kc8_K* 1kd1_K* 1kqs_I* 1m1k_K* 1m90_K* 1ml5_m* 1n8r_K* 1nji_K* 1q7y_K* 1q81_K* 1q82_K* 1q86_K* 1qvf_I 1qvg_I 1s72_J* ...
Probab=23.94 E-value=32 Score=27.68 Aligned_cols=20 Identities=15% Similarity=0.207 Sum_probs=17.3
Q ss_pred chhHHHHHhhcCCCCeEEEE
Q 027559 64 GDMAQLCQKHLKPNDFIYVT 83 (222)
Q Consensus 64 GklAE~~aqyLkKGD~V~Vs 83 (222)
|+||-.+|..|.-||.|.|.
T Consensus 20 GRLAs~vAk~L~~Gd~VVVi 39 (145)
T 1vq8_J 20 GRVASQVAEQALDGETVAVV 39 (145)
T ss_dssp HHHHHHHHHHHHTTCCEEEE
T ss_pred HHHHHHHHHHHhcCCEEEEE
Confidence 89999999999988877763
No 70
>4gop_C Putative uncharacterized protein; OB fold, ssDNA binding, DNA binding protein-DNA complex; HET: DNA; 3.10A {Ustilago maydis}
Probab=23.94 E-value=30 Score=31.46 Aligned_cols=30 Identities=17% Similarity=0.227 Sum_probs=23.3
Q ss_pred eeEEEEEechhHHHHHh--hcCCCCeEEEEEE
Q 027559 56 SSILLAVGGDMAQLCQK--HLKPNDFIYVTGQ 85 (222)
Q Consensus 56 ~wI~Vv~WGklAE~~aq--yLkKGD~V~VsGr 85 (222)
.-|+|++||+.|+.+.. ....|+-|.|.|=
T Consensus 173 ~~i~~tLWg~~A~~f~~~~~~~~~~VV~i~~~ 204 (444)
T 4gop_C 173 RSVKLTLWGKTAETFPTNAGVDEKPVLAFKGV 204 (444)
T ss_dssp BEEEEEEEHHHHHTSTTSTTSSSCCEEEEESC
T ss_pred CEEEEEEEhhhhhhhhhhhccCCCCEEEEEeE
Confidence 36899999999987652 2678888888773
No 71
>3mal_A Stromal cell-derived factor 2-like protein; trefoil fold, MIR motifs, unfolded protein response, putativ binding protein, plant protein; 1.95A {Arabidopsis thaliana} SCOP: b.42.6.0
Probab=22.24 E-value=13 Score=31.06 Aligned_cols=29 Identities=17% Similarity=0.021 Sum_probs=23.9
Q ss_pred CCCccCCCCceeeeCC-CCCccHHHhhhhh
Q 027559 169 PDFKHKSTGEALWLDP-KDPPWVKKQLQRI 197 (222)
Q Consensus 169 pDFkhk~tg~aLWl~~-~~P~wv~~~L~~l 197 (222)
=-|+|..||-.||-.. .-|.|.-.|.|..
T Consensus 144 fRL~H~~T~~yL~sh~~~lp~wg~~Q~EV~ 173 (199)
T 3mal_A 144 VRLQHIDTSGYLHSHDKKYQRIAGGQQEVC 173 (199)
T ss_dssp EEEEETTTCCEEEEEEEECCSSSTTCEEEE
T ss_pred EEEEECCCCeEEeeCCCCCCCCCCcceEEE
Confidence 3589999999999964 5799999887763
No 72
>1t9f_A Protein 1D10; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics, secsg; 2.00A {Caenorhabditis elegans} SCOP: b.42.6.1
Probab=21.84 E-value=13 Score=30.48 Aligned_cols=28 Identities=21% Similarity=0.191 Sum_probs=23.5
Q ss_pred CCccCCCCceeeeCC-CCCccHHHhhhhh
Q 027559 170 DFKHKSTGEALWLDP-KDPPWVKKQLQRI 197 (222)
Q Consensus 170 DFkhk~tg~aLWl~~-~~P~wv~~~L~~l 197 (222)
-|+|.+||-.||... ..|.|.-.|.|..
T Consensus 133 RL~H~~tg~yL~~~~~~lp~w~~~Q~EV~ 161 (187)
T 1t9f_A 133 KLRHAVTGSYLSLSGQQFGRPIHGQREVV 161 (187)
T ss_dssp EEEETTTCCEEEEEEEECCTTSTTCEEEE
T ss_pred EEEECCcCeEEecCCcccCCCCCCceEEE
Confidence 368999999999985 5699998888774
No 73
>1xjv_A Protection of telomeres 1; protein-DNA complex, single-stranded DNA, transcription/DNA complex; 1.73A {Homo sapiens} SCOP: b.40.4.3 b.40.4.3 PDB: 3kjo_A 3kjp_A
Probab=21.35 E-value=98 Score=26.60 Aligned_cols=27 Identities=19% Similarity=0.316 Sum_probs=23.3
Q ss_pred eEEEEEechhHHHHHhhcCCCCeEEEEE
Q 027559 57 SILLAVGGDMAQLCQKHLKPNDFIYVTG 84 (222)
Q Consensus 57 wI~Vv~WGklAE~~aqyLkKGD~V~VsG 84 (222)
-++|++|+.-|..| +.|+.||.|.+..
T Consensus 212 t~~V~~~d~h~~~~-~~lk~Gd~V~l~N 238 (294)
T 1xjv_A 212 TIDILVYDNHVHVA-RSLKVGSFLRIYS 238 (294)
T ss_dssp SEEEEEETTHHHHH-HHCCTTCEEEEEE
T ss_pred eEEEEEEcchhHHH-hcCCCCcEEEEee
Confidence 47899999999766 5899999999876
Done!