Query 027560
Match_columns 222
No_of_seqs 131 out of 1078
Neff 8.6
Searched_HMMs 46136
Date Fri Mar 29 11:45:39 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/027560.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/027560hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG1692 Putative cargo transpo 100.0 2E-47 4.3E-52 291.9 17.7 198 13-222 4-201 (201)
2 KOG1691 emp24/gp25L/p24 family 100.0 2E-45 4.3E-50 286.2 23.9 192 30-222 18-210 (210)
3 KOG1690 emp24/gp25L/p24 family 100.0 1.4E-45 3.1E-50 282.7 19.5 191 29-222 15-215 (215)
4 KOG1693 emp24/gp25L/p24 family 100.0 1.6E-39 3.5E-44 249.9 18.7 184 31-220 20-205 (209)
5 PF01105 EMP24_GP25L: emp24/gp 100.0 1.8E-39 3.9E-44 255.8 0.7 180 34-217 1-183 (183)
6 KOG3287 Membrane trafficking p 100.0 4.1E-35 8.8E-40 228.0 21.5 184 32-220 33-227 (236)
7 smart00557 IG_FLMN Filamin-typ 94.9 0.49 1.1E-05 32.8 9.3 43 74-116 33-78 (93)
8 PF13473 Cupredoxin_1: Cupredo 93.1 0.36 7.9E-06 34.1 6.0 71 32-112 20-93 (104)
9 PF04151 PPC: Bacterial pre-pe 92.8 0.71 1.5E-05 30.1 6.6 61 45-112 3-68 (70)
10 PF01835 A2M_N: MG2 domain; I 91.5 3.4 7.3E-05 28.6 9.8 62 53-115 13-86 (99)
11 PRK02710 plastocyanin; Provisi 89.5 6.4 0.00014 28.6 10.3 93 11-112 7-105 (119)
12 PF00630 Filamin: Filamin/ABP2 87.2 3.5 7.6E-05 28.5 6.7 43 74-116 43-92 (101)
13 PF13860 FlgD_ig: FlgD Ig-like 84.6 8 0.00017 25.9 7.2 32 55-91 12-43 (81)
14 PF11589 DUF3244: Domain of un 83.5 5.5 0.00012 28.3 6.3 57 54-117 36-96 (106)
15 PF05753 TRAP_beta: Translocon 82.6 17 0.00036 28.7 9.2 30 49-81 32-61 (181)
16 PRK10378 inactive ferrous ion 82.4 8.2 0.00018 34.0 8.0 69 32-111 29-103 (375)
17 PF05738 Cna_B: Cna protein B- 80.0 5.1 0.00011 25.7 4.7 42 74-115 3-46 (70)
18 KOG1693 emp24/gp25L/p24 family 79.2 31 0.00067 27.6 12.0 159 32-201 33-197 (209)
19 PF13897 GOLD_2: Golgi-dynamic 76.8 3.3 7.1E-05 30.9 3.2 25 100-124 105-129 (136)
20 PRK05842 flgD flagellar basal 75.0 16 0.00034 31.1 7.3 59 55-114 149-220 (295)
21 PF13620 CarboxypepD_reg: Carb 75.0 4.3 9.4E-05 26.8 3.3 44 73-116 15-58 (82)
22 PF07495 Y_Y_Y: Y_Y_Y domain; 73.1 20 0.00043 22.4 6.7 55 74-130 9-65 (66)
23 PRK14081 triple tyrosine motif 73.1 58 0.0012 31.1 11.1 57 74-131 417-476 (667)
24 PF04728 LPP: Lipoprotein leuc 72.4 21 0.00046 22.4 6.3 28 147-174 4-31 (56)
25 PRK06655 flgD flagellar basal 71.5 22 0.00047 29.0 7.1 56 55-115 113-179 (225)
26 PF10528 PA14_2: GLEYA domain; 70.2 11 0.00025 27.1 4.7 48 40-90 55-102 (113)
27 PF09315 DUF1973: Domain of un 68.8 55 0.0012 25.7 9.5 66 44-117 18-89 (179)
28 PRK12813 flgD flagellar basal 68.8 24 0.00052 28.8 6.8 56 54-115 110-174 (223)
29 PF07210 DUF1416: Protein of u 68.0 36 0.00077 23.2 7.0 60 51-115 4-63 (85)
30 PRK15396 murein lipoprotein; P 67.9 33 0.00071 23.1 6.2 45 145-189 24-68 (78)
31 TIGR03503 conserved hypothetic 66.6 93 0.002 27.5 10.4 42 74-115 243-287 (374)
32 PF05739 SNARE: SNARE domain; 65.8 30 0.00065 21.6 6.1 45 146-190 4-48 (63)
33 PRK12812 flgD flagellar basal 65.6 27 0.00058 29.2 6.6 55 55-114 128-193 (259)
34 PRK09973 putative outer membra 63.9 40 0.00087 23.1 6.1 45 146-190 24-68 (85)
35 PF09753 Use1: Membrane fusion 62.2 60 0.0013 26.8 8.2 23 192-215 228-250 (251)
36 KOG0518 Actin-binding cytoskel 61.9 41 0.0009 33.5 7.9 45 74-118 884-931 (1113)
37 KOG3202 SNARE protein TLG1/Syn 61.2 70 0.0015 26.3 8.2 25 145-169 151-175 (235)
38 PF05984 Cytomega_UL20A: Cytom 60.8 21 0.00046 24.3 4.2 13 74-86 68-80 (100)
39 KOG2861 Uncharacterized conser 58.6 24 0.00051 31.4 5.3 55 151-211 338-392 (399)
40 PF10779 XhlA: Haemolysin XhlA 57.7 51 0.0011 21.5 8.9 19 148-166 8-26 (71)
41 COG3630 OadG Na+-transporting 57.6 6.2 0.00013 26.9 1.2 23 2-24 10-32 (84)
42 PF14524 Wzt_C: Wzt C-terminal 55.0 58 0.0012 23.5 6.4 70 42-115 24-93 (142)
43 PRK12634 flgD flagellar basal 54.9 30 0.00065 28.2 5.1 41 74-114 123-174 (221)
44 PRK12633 flgD flagellar basal 53.2 57 0.0012 26.7 6.5 41 74-114 130-181 (230)
45 PF10572 UPF0556: Uncharacteri 52.4 1.1E+02 0.0023 23.6 10.1 37 28-65 19-56 (158)
46 COG1723 Uncharacterized conser 50.7 23 0.00051 30.4 3.9 56 150-211 270-325 (331)
47 COG4856 Uncharacterized protei 49.2 1.5E+02 0.0032 26.3 8.5 38 74-114 71-112 (403)
48 PF05377 FlaC_arch: Flagella a 49.0 64 0.0014 20.2 5.9 28 148-175 2-29 (55)
49 PF15417 DUF4624: Domain of un 48.9 1E+02 0.0022 22.3 6.9 65 42-115 37-109 (132)
50 PRK14081 triple tyrosine motif 47.5 1.9E+02 0.0041 27.7 9.6 43 74-116 224-266 (667)
51 PF08372 PRT_C: Plant phosphor 46.3 1.3E+02 0.0029 23.0 7.3 47 146-192 52-98 (156)
52 PRK09619 flgD flagellar basal 45.3 98 0.0021 25.1 6.6 55 55-115 110-172 (218)
53 PRK03814 oxaloacetate decarbox 45.3 12 0.00026 25.7 1.1 21 4-24 13-33 (85)
54 PF12690 BsuPI: Intracellular 45.0 94 0.002 20.9 6.5 18 74-91 25-42 (82)
55 PF07835 COX4_pro_2: Bacterial 44.8 66 0.0014 19.0 4.3 27 181-207 16-42 (44)
56 PF10805 DUF2730: Protein of u 43.9 70 0.0015 22.7 5.0 38 152-189 48-87 (106)
57 PRK13165 cytochrome c-type bio 43.8 79 0.0017 24.4 5.5 77 9-86 6-91 (160)
58 PF14155 DUF4307: Domain of un 43.4 1.2E+02 0.0026 21.7 7.3 41 48-90 40-80 (112)
59 COG4932 Predicted outer membra 41.8 2E+02 0.0043 29.8 9.0 102 32-134 1316-1420(1531)
60 PF06156 DUF972: Protein of un 41.7 1.2E+02 0.0027 21.6 5.9 26 148-173 10-35 (107)
61 COG2372 CopC Uncharacterized p 41.4 1.4E+02 0.0031 22.0 9.7 43 74-116 61-110 (127)
62 PF14990 DUF4516: Domain of un 40.6 19 0.00041 21.7 1.3 26 6-31 5-30 (47)
63 PRK13150 cytochrome c-type bio 40.0 99 0.0021 23.8 5.5 36 53-89 56-94 (159)
64 PF10731 Anophelin: Thrombin i 40.0 18 0.00039 22.9 1.2 15 12-26 3-17 (65)
65 COG3017 LolB Outer membrane li 39.8 2E+02 0.0043 23.2 8.8 18 10-27 5-22 (206)
66 COG4467 Regulator of replicati 39.7 1.3E+02 0.0028 21.6 5.6 43 147-189 9-51 (114)
67 PRK13159 cytochrome c-type bio 39.7 93 0.002 23.9 5.3 76 8-86 5-85 (155)
68 PF12669 P12: Virus attachment 39.2 35 0.00076 21.5 2.5 9 212-220 17-25 (58)
69 PF00517 GP41: Retroviral enve 39.1 1.3E+02 0.0029 24.0 6.5 59 149-207 104-168 (204)
70 KOG2678 Predicted membrane pro 38.6 2.2E+02 0.0048 23.3 8.5 31 189-219 213-243 (244)
71 PF04678 DUF607: Protein of un 38.1 1.9E+02 0.0042 22.5 8.8 44 152-195 56-99 (180)
72 COG5415 Predicted integral mem 37.0 2.3E+02 0.0049 23.0 9.0 31 146-176 15-45 (251)
73 PRK13169 DNA replication intia 36.8 1.6E+02 0.0035 21.2 6.0 23 148-170 10-32 (110)
74 PF01519 DUF16: Protein of unk 35.7 1.6E+02 0.0035 20.9 6.1 44 147-190 54-97 (102)
75 COG3915 Uncharacterized protei 35.6 62 0.0013 24.3 3.6 35 10-48 5-39 (155)
76 PF04277 OAD_gamma: Oxaloaceta 35.3 25 0.00053 23.3 1.5 22 4-25 6-27 (79)
77 PF08842 Mfa2: Fimbrillin-A as 34.8 45 0.00097 27.3 3.3 43 73-115 29-77 (283)
78 PF07888 CALCOCO1: Calcium bin 34.3 3.9E+02 0.0085 25.0 11.5 76 36-116 14-98 (546)
79 PF09323 DUF1980: Domain of un 34.1 56 0.0012 25.5 3.5 34 185-218 26-59 (182)
80 PF14584 DUF4446: Protein of u 33.9 1.5E+02 0.0032 22.6 5.6 50 139-188 32-81 (151)
81 PF07125 DUF1378: Protein of u 33.6 72 0.0016 19.9 3.1 29 189-219 7-35 (59)
82 COG3117 Uncharacterized protei 33.2 1.1E+02 0.0023 24.3 4.8 19 6-24 2-20 (188)
83 PF11598 COMP: Cartilage oligo 33.1 1.1E+02 0.0024 18.2 5.9 35 150-184 5-39 (45)
84 PF04136 Sec34: Sec34-like fam 32.4 2.3E+02 0.0049 21.6 6.9 53 148-200 30-82 (157)
85 KOG0518 Actin-binding cytoskel 31.0 3.2E+02 0.0069 27.6 8.5 41 74-114 391-435 (1113)
86 PF14054 DUF4249: Domain of un 30.8 2.1E+02 0.0045 23.7 6.7 43 45-87 31-76 (298)
87 PRK02919 oxaloacetate decarbox 30.5 28 0.00061 23.6 1.1 21 4-24 12-32 (82)
88 PHA02650 hypothetical protein; 30.4 66 0.0014 21.6 2.8 31 184-214 42-72 (81)
89 PF02439 Adeno_E3_CR2: Adenovi 29.8 58 0.0013 18.7 2.1 18 11-28 12-29 (38)
90 PF08537 NBP1: Fungal Nap bind 29.5 1.4E+02 0.0031 25.7 5.3 41 147-187 183-223 (323)
91 PF15240 Pro-rich: Proline-ric 29.5 36 0.00079 26.7 1.7 13 11-23 2-14 (179)
92 PHA02932 hypothetical protein; 29.2 2.6E+02 0.0057 22.3 6.4 51 33-93 41-95 (221)
93 PF14686 fn3_3: Polysaccharide 29.1 2E+02 0.0043 19.9 6.2 29 87-115 41-69 (95)
94 PHA03351 tegument protein UL16 29.0 56 0.0012 25.3 2.6 23 44-66 65-87 (235)
95 TIGR01195 oadG_fam sodium pump 29.0 31 0.00067 23.4 1.1 22 3-24 8-29 (82)
96 PRK14155 heat shock protein Gr 28.9 3.1E+02 0.0067 22.1 7.1 37 147-183 21-57 (208)
97 PF13715 DUF4480: Domain of un 28.5 1.8E+02 0.0038 19.1 7.8 39 73-116 16-54 (88)
98 PF10794 DUF2606: Protein of u 28.3 2.4E+02 0.0053 20.7 5.7 22 95-116 87-108 (131)
99 PRK14163 heat shock protein Gr 28.0 3.3E+02 0.0071 22.1 7.1 41 147-187 48-88 (214)
100 PHA03054 IMV membrane protein; 27.8 82 0.0018 20.7 2.8 28 186-213 43-70 (72)
101 PF03100 CcmE: CcmE; InterPro 27.5 99 0.0022 22.8 3.7 32 53-85 49-83 (131)
102 PHA02819 hypothetical protein; 27.3 88 0.0019 20.5 2.9 28 186-213 41-68 (71)
103 PF05506 DUF756: Domain of unk 27.3 2E+02 0.0043 19.3 6.6 35 45-84 47-81 (89)
104 TIGR03042 PS_II_psbQ_bact phot 27.1 58 0.0013 24.6 2.4 21 9-30 2-22 (142)
105 PRK13792 lysozyme inhibitor; P 26.7 2.1E+02 0.0046 21.1 5.2 49 14-62 6-62 (127)
106 PRK13254 cytochrome c-type bio 26.6 1.6E+02 0.0034 22.4 4.7 56 27-85 26-83 (148)
107 COG5074 t-SNARE complex subuni 25.9 2.5E+02 0.0053 23.3 5.8 23 146-168 185-207 (280)
108 KOG3091 Nuclear pore complex, 25.9 3E+02 0.0065 25.3 6.9 50 148-197 350-399 (508)
109 cd00193 t_SNARE Soluble NSF (N 25.2 1.6E+02 0.0034 17.5 5.9 43 147-189 7-49 (60)
110 PHA02975 hypothetical protein; 25.0 1.3E+02 0.0029 19.6 3.4 28 187-214 40-67 (69)
111 PF14235 DUF4337: Domain of un 24.8 3.2E+02 0.007 20.9 8.6 66 149-214 69-134 (157)
112 PF03554 Herpes_UL73: UL73 vir 24.6 1.2E+02 0.0027 20.6 3.4 28 185-212 44-71 (82)
113 PRK14154 heat shock protein Gr 24.0 3.9E+02 0.0084 21.6 7.1 42 147-188 60-101 (208)
114 PF05015 Plasmid_killer: Plasm 24.0 72 0.0016 21.9 2.3 31 84-116 51-81 (93)
115 PF09425 CCT_2: Divergent CCT 23.7 43 0.00093 17.7 0.8 10 211-220 7-16 (27)
116 KOG3385 V-SNARE [Intracellular 23.5 2.6E+02 0.0057 20.3 5.0 22 148-169 38-59 (118)
117 PF13874 Nup54: Nucleoporin co 23.3 3.2E+02 0.0069 20.3 7.6 49 144-192 42-90 (141)
118 PF14109 GldH_lipo: GldH lipop 23.3 3.1E+02 0.0067 20.1 7.2 42 73-114 68-114 (131)
119 COG2869 NqrC Na+-transporting 23.1 44 0.00096 27.5 1.2 18 13-30 13-30 (264)
120 PF11444 DUF2895: Protein of u 23.1 71 0.0015 25.6 2.3 29 14-42 18-46 (199)
121 PRK14143 heat shock protein Gr 23.1 4.3E+02 0.0094 21.8 7.2 37 147-183 75-111 (238)
122 PRK06798 fliD flagellar cappin 23.0 5.3E+02 0.011 23.3 8.1 12 208-219 426-437 (440)
123 PHA02844 putative transmembran 22.9 1.1E+02 0.0025 20.2 2.8 26 189-214 46-71 (75)
124 PRK10803 tol-pal system protei 22.9 2.1E+02 0.0046 23.8 5.3 36 147-182 62-97 (263)
125 PRK10299 PhoPQ regulatory prot 22.9 71 0.0015 19.2 1.7 18 10-27 5-22 (47)
126 PF10670 DUF4198: Domain of un 22.6 3.7E+02 0.008 20.8 6.5 18 95-112 192-209 (215)
127 PF11797 DUF3324: Protein of u 22.0 2.3E+02 0.0049 21.0 4.8 43 74-116 62-116 (140)
128 PF02927 CelD_N: N-terminal ig 21.9 2.6E+02 0.0057 18.9 4.8 12 103-114 75-86 (91)
129 PF05371 Phage_Coat_Gp8: Phage 21.8 1.6E+02 0.0034 18.2 3.1 22 197-218 30-51 (52)
130 PF14030 DUF4245: Protein of u 21.5 77 0.0017 24.5 2.2 22 7-28 6-27 (169)
131 smart00338 BRLZ basic region l 21.5 2.2E+02 0.0048 17.8 4.7 35 144-178 24-58 (65)
132 PF13179 DUF4006: Family of un 21.5 88 0.0019 20.3 2.1 15 12-26 16-30 (66)
133 PF09889 DUF2116: Uncharacteri 21.3 2.3E+02 0.005 17.9 4.9 13 186-198 36-48 (59)
134 PRK14147 heat shock protein Gr 21.3 4E+02 0.0087 20.7 7.0 39 147-185 26-64 (172)
135 KOG3285 Spindle assembly check 21.1 1.6E+02 0.0035 23.2 3.8 49 106-156 81-129 (203)
136 COG2332 CcmE Cytochrome c-type 20.9 3.9E+02 0.0084 20.4 7.3 72 11-86 10-85 (153)
137 TIGR03044 PS_II_psb27 photosys 20.8 71 0.0015 23.9 1.8 18 12-29 10-27 (135)
138 TIGR03746 conj_TIGR03746 integ 20.6 79 0.0017 25.3 2.1 30 13-42 18-47 (202)
139 PRK14156 heat shock protein Gr 20.6 4.2E+02 0.0092 20.7 7.2 39 146-184 34-72 (177)
140 PRK13211 N-acetylglucosamine-b 20.5 6.7E+02 0.015 23.0 9.6 44 74-117 342-390 (478)
141 PF10805 DUF2730: Protein of u 20.5 92 0.002 22.1 2.3 28 191-218 7-34 (106)
No 1
>KOG1692 consensus Putative cargo transport protein EMP24 (p24 protein family) [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=2e-47 Score=291.92 Aligned_cols=198 Identities=25% Similarity=0.439 Sum_probs=177.0
Q ss_pred HHHHHHHHHHHhhhcccCeeeeEEEEEcCCCcceeeEEcCCCcEEEEEEEEeeCCCCCCCCeeEEEEECCCCCeEEeeec
Q 027560 13 VLPLILLLCLACYICVVPVTEAIWLQIPSSGTKCVSEEINSNVVVLADYYVIDEAHPEHPPTVSAKVTSPYGNNLHHNEN 92 (222)
Q Consensus 13 ~~~~~~~l~~~~~~~~~~~~~~l~f~i~~~~~~Cf~e~v~~~~~i~~~y~v~~~~~~~~~~~i~v~v~~p~g~~v~~~~~ 92 (222)
+.-++++||+++. .+.+..+.+++.+++||+|++..|+.+.++|++.++ +.. ++++.|++|+|+++++.++
T Consensus 4 ~~~~~vll~~L~~-----~~~~~~is~~ah~eeCf~e~~~~gd~~~vsF~v~~g---g~~-~vd~~I~gP~~~~i~~~~~ 74 (201)
T KOG1692|consen 4 LASVIVLLGLLFI-----SAAGYGISLDAHEEECFFENLEEGDKLSVSFEVIDG---GFL-GVDVEITGPDGKIIHKGKR 74 (201)
T ss_pred hhhHHHHHHHHHH-----HhhheeEEEccchhhhHhhhhccCCEEEEEEEEecC---Ccc-ceeEEEECCCCchhhhccc
Confidence 3445556666653 267788899999999999999999999999999975 334 9999999999999999998
Q ss_pred cceeeEEEEeeccceeeeeeeeCCCCCCcccEEEEEEEEecccccchhhhhhccccchHHHHHHHHHHHHHHHHHHHHHH
Q 027560 93 VTHGQFAFTTTEAGNYMACFWLGSNPQKVADATLGLDWRIGFSAKDWESVAKKDKIEGVELHLKRLEAQVQSIHENLLFL 172 (222)
Q Consensus 93 ~~~~~f~f~~~~~G~y~iCf~n~~~~~~~~~~~v~f~i~~g~~~~d~~~~a~~e~l~~l~~~l~~l~~~l~~I~~eq~~~ 172 (222)
.+.|+|+|+++.+|.|++||+|+.+ +..++.|.|+++.|..... ++.++.+|.+++++.+.+|...+..++.||+|+
T Consensus 75 ~ssgk~tF~a~~~G~Y~fCF~N~~s--~mtpk~V~F~ihvg~~~~~-~d~~~d~~~~~L~~~I~eL~~al~~Vk~EQeY~ 151 (201)
T KOG1692|consen 75 ESSGKYTFTAPKKGTYTFCFSNKMS--TMTPKTVMFTIHVGHAPQR-DDLAKDAHQNKLEEMIRELSEALTSVKHEQEYM 151 (201)
T ss_pred ccCceEEEEecCCceEEEEecCCCC--CCCceEEEEEEEEeecccc-chhcccccccHHHHHHHHHHHHHHHhHHHHHHH
Confidence 8999999999999999999999875 4568899999999876543 346788888999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHhHHHHHHHhHHHHHHHHHHHHHHHHHHHHhhhccCC
Q 027560 173 KHREAEMREVSEVTNSRVAWLSILSLGVCIAVSSLQLWYLTRYFQKKKLI 222 (222)
Q Consensus 173 ~~re~~~~~~~est~~rv~~~sil~i~vli~~~~~Qv~~lk~fF~~KklI 222 (222)
..|+++||.++|+|++|+.|||++|.++||++++.|||||||||+.|+.+
T Consensus 152 ~~Rer~Hr~~nEntn~RVv~wsife~~vLi~~s~~QVyYLkRfFEvkrvv 201 (201)
T KOG1692|consen 152 EARERIHRNTNENTNSRVVLWSIFEALVLIAMSVLQVYYLKRFFEVKRVV 201 (201)
T ss_pred HHHHHHHHHhhhcccceeehHHHHHHHHHHHHHHHHHHHHHHhheeeecC
Confidence 99999999999999999999999999999999999999999999999864
No 2
>KOG1691 consensus emp24/gp25L/p24 family of membrane trafficking proteins [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=2e-45 Score=286.23 Aligned_cols=192 Identities=53% Similarity=0.876 Sum_probs=177.6
Q ss_pred CeeeeEEEEEcCCCcceeeEEcCCCcEEEEEEEEeeCCCCCCCCeeEEEEECCCCCeEEeeeccceeeEEEEeeccceee
Q 027560 30 PVTEAIWLQIPSSGTKCVSEEINSNVVVLADYYVIDEAHPEHPPTVSAKVTSPYGNNLHHNENVTHGQFAFTTTEAGNYM 109 (222)
Q Consensus 30 ~~~~~l~f~i~~~~~~Cf~e~v~~~~~i~~~y~v~~~~~~~~~~~i~v~v~~p~g~~v~~~~~~~~~~f~f~~~~~G~y~ 109 (222)
..+.++.|+++++.++|+.|++.+|..+.|.|.+.++..+..+ .+++.|+||.|+.+++.++.++|+|+|++.++|.|.
T Consensus 18 ~~~~a~~f~v~~~~~kCi~EeI~~n~lv~g~y~i~~~~~~~~~-~~~~~Vts~~G~~~~~~env~~gqFaFta~e~~~y~ 96 (210)
T KOG1691|consen 18 PLVHALRFDVPSKTTKCISEEIHENVLVVGDYEIINPNGDHSH-KLSVKVTSPYGNNLHSKENVTKGQFAFTAEESGMYE 96 (210)
T ss_pred hhhheEEEEecCCCCEeehhhhccCeEEEEEEEEecCCCCccc-eEEEEEEcCCCceeehhhccccceEEEEeccCCcEE
Confidence 4689999999999999999999999999999999876422223 899999999999999999999999999999999999
Q ss_pred eeeeeCCCC-CCcccEEEEEEEEecccccchhhhhhccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhH
Q 027560 110 ACFWLGSNP-QKVADATLGLDWRIGFSAKDWESVAKKDKIEGVELHLKRLEAQVQSIHENLLFLKHREAEMREVSEVTNS 188 (222)
Q Consensus 110 iCf~n~~~~-~~~~~~~v~f~i~~g~~~~d~~~~a~~e~l~~l~~~l~~l~~~l~~I~~eq~~~~~re~~~~~~~est~~ 188 (222)
+||.+.... .......|+|||..|.+++||+++||+++++++|-++++|.+.+..|.++.-|++.||+++|+++|+||+
T Consensus 97 ~Cf~~~~~~~~p~~~~~I~ld~k~Gv~akdw~~IAKkeklep~E~elrrLed~~~sI~~e~~YLr~REeemr~~nesTNs 176 (210)
T KOG1691|consen 97 ACFTADVPGHKPETKRSIDLDWKTGVEAKDWDSIAKKEKLEPLEVELRRLEDLVESIHEEMYYLREREEEMRNTNESTNS 176 (210)
T ss_pred EEEecccCCCCCCcceEEEEEeeccccccchHHHHhhhcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhh
Confidence 999993321 1234579999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhHHHHHHHHHHHHHHHHHHHHhhhccCC
Q 027560 189 RVAWLSILSLGVCIAVSSLQLWYLTRYFQKKKLI 222 (222)
Q Consensus 189 rv~~~sil~i~vli~~~~~Qv~~lk~fF~~KklI 222 (222)
||.|+|++.++++++++.||++|||+||++||+|
T Consensus 177 rv~~fSi~Sl~v~~~va~~QvlyLK~fF~kKKLI 210 (210)
T KOG1691|consen 177 RVAWFSILSLVVLLSVAGWQVLYLKRFFQKKKLI 210 (210)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCC
Confidence 9999999999999999999999999999999998
No 3
>KOG1690 consensus emp24/gp25L/p24 family of membrane trafficking proteins [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=1.4e-45 Score=282.70 Aligned_cols=191 Identities=25% Similarity=0.382 Sum_probs=170.0
Q ss_pred cCeeeeEEEEEcCCCcceeeEEcCCCcEEEEEEEEe--eC---CCC--CCCCeeEEEEECCCCC--eEEeeeccceeeEE
Q 027560 29 VPVTEAIWLQIPSSGTKCVSEEINSNVVVLADYYVI--DE---AHP--EHPPTVSAKVTSPYGN--NLHHNENVTHGQFA 99 (222)
Q Consensus 29 ~~~~~~l~f~i~~~~~~Cf~e~v~~~~~i~~~y~v~--~~---~~~--~~~~~i~v~v~~p~g~--~v~~~~~~~~~~f~ 99 (222)
+..+.|++|++..++++||++++|+|+.+.|+|.+. ++ +++ ++. ++.+.|.+|.++ +|.+++..++|+|+
T Consensus 15 ~~~~~a~yFy~~~~e~KCF~eelpk~tmv~G~yk~qlyd~~~~~y~~~p~~-gm~VeV~e~fdnnh~Vl~q~~ss~G~ft 93 (215)
T KOG1690|consen 15 ATQVQALYFYIAGTEKKCFIEELPKGTMVTGNYKAQLYDDQLKGYGSYPNI-GMHVEVKETFDNNHVVLSQQYSSEGDFT 93 (215)
T ss_pred HhhccEEEEEecCCcccchhhhCCCCcEEEeeeeeeeecchhcccccCCCc-eEEEEeecCCCCceEEEeecCCCCCceE
Confidence 347899999999999999999999999999999985 21 111 223 899999999988 89999999999999
Q ss_pred EEeeccceeeeeeeeCCC-CCCcccEEEEEEEEecccccchhhhhhccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 027560 100 FTTTEAGNYMACFWLGSN-PQKVADATLGLDWRIGFSAKDWESVAKKDKIEGVELHLKRLEAQVQSIHENLLFLKHREAE 178 (222)
Q Consensus 100 f~~~~~G~y~iCf~n~~~-~~~~~~~~v~f~i~~g~~~~d~~~~a~~e~l~~l~~~l~~l~~~l~~I~~eq~~~~~re~~ 178 (222)
|++..+|+|+||+.+..+ ++.+...+|.+++++|.++.++.+. ++..+.++.++..|++++..|+.||+++|.||++
T Consensus 94 Fta~~~GeH~IC~~s~s~awf~~aklRvhld~qvG~~a~l~a~~--ke~~k~l~~Rv~~L~~~~~~IrkEQ~~~R~RE~~ 171 (215)
T KOG1690|consen 94 FTALTPGEHRICIQSNSTAWFNGAKLRVHLDIQVGDHANLDAQI--KETDKLLEGRVRQLNSRLESIRKEQNLQREREET 171 (215)
T ss_pred EEccCCCceEEEEecccchhhccceEEEEEEEeeCchhhhhhhh--hhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999987554 3445678999999999998877654 4566788899999999999999999999999999
Q ss_pred HHHHHHHHhHHHHHHHhHHHHHHHHHHHHHHHHHHHHhhhccCC
Q 027560 179 MREVSEVTNSRVAWLSILSLGVCIAVSSLQLWYLTRYFQKKKLI 222 (222)
Q Consensus 179 ~~~~~est~~rv~~~sil~i~vli~~~~~Qv~~lk~fF~~KklI 222 (222)
+|++.||+|+|++||+++|+++|+++|+||+.+||+||.+||++
T Consensus 172 FR~tSES~NsRvm~Wsv~Q~vvL~~tc~wQmrhL~~FFvkqKlv 215 (215)
T KOG1690|consen 172 FRDTSESANSRVMWWSVAQLVVLLVTCIWQMRHLKSFFVKQKLV 215 (215)
T ss_pred HHhhhhhhcceeeehhHHHHHHHHHHHHHHHHHHHHHHHHhhcC
Confidence 99999999999999999999999999999999999999999985
No 4
>KOG1693 consensus emp24/gp25L/p24 family of membrane trafficking proteins [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=1.6e-39 Score=249.88 Aligned_cols=184 Identities=20% Similarity=0.387 Sum_probs=162.6
Q ss_pred eeeeEEEEEcCCCcceeeEEcCCCc-EEEEEEEEeeCCCCCCCCeeEEEEECCCCCeEEeeeccceeeEEEEeeccceee
Q 027560 31 VTEAIWLQIPSSGTKCVSEEINSNV-VVLADYYVIDEAHPEHPPTVSAKVTSPYGNNLHHNENVTHGQFAFTTTEAGNYM 109 (222)
Q Consensus 31 ~~~~l~f~i~~~~~~Cf~e~v~~~~-~i~~~y~v~~~~~~~~~~~i~v~v~~p~g~~v~~~~~~~~~~f~f~~~~~G~y~ 109 (222)
++..++|++|++.++|||+++++++ .+...|+|+.| ++. +|++.|++|+|+++++..++..+.|.|++...|+|+
T Consensus 20 ~a~elTfeLp~~aKqC~Y~d~~~~~~~~~~~fqV~tG---G~f-DVD~~I~aPdgkvI~~~~kk~~~~~~f~ae~~G~Y~ 95 (209)
T KOG1693|consen 20 EASELTFELPDNAKQCFYEDLKKDDDTTSFEFQVQTG---GHF-DVDYDIEAPDGKVIYSEKKKRYDSFLFKAEGKGEYT 95 (209)
T ss_pred hcccEEEEcCCcchhheeeecccCCceEEEEEEEEeC---Cce-eeEEEEECCCCCEEeeccccccccEEEEEecceEEE
Confidence 3789999999999999999999975 59999999976 556 999999999999999999999999999999999999
Q ss_pred eeeeeCCCCCCcccEEEEEEEEecccccchhhh-hhccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhH
Q 027560 110 ACFWLGSNPQKVADATLGLDWRIGFSAKDWESV-AKKDKIEGVELHLKRLEAQVQSIHENLLFLKHREAEMREVSEVTNS 188 (222)
Q Consensus 110 iCf~n~~~~~~~~~~~v~f~i~~g~~~~d~~~~-a~~e~l~~l~~~l~~l~~~l~~I~~eq~~~~~re~~~~~~~est~~ 188 (222)
+||+|..+. ..++.+.++++.|.+..-.... ++....+.++..+..+.+.|+.|.+.|.|.|.||.|.+.+++|+++
T Consensus 96 fCFsN~fst--f~~Kiv~~~~q~~~~~~~~~~~~~~~~~~~~mena~~~I~~~L~~I~~~q~y~R~RE~rn~~tv~st~~ 173 (209)
T KOG1693|consen 96 FCFSNEFST--FSHKIVYMDFQVGEEPPLHPAVSNRDTALTQMENAIVEIHRALNKIDDTQTYYRLREARNRSTVESTNS 173 (209)
T ss_pred EEecCcccc--ccceEeeehhhhccccccCccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCccchhcccc
Confidence 999997653 4677888888888543322222 2233467899999999999999999999999999999999999999
Q ss_pred HHHHHHhHHHHHHHHHHHHHHHHHHHHhhhcc
Q 027560 189 RVAWLSILSLGVCIAVSSLQLWYLTRYFQKKK 220 (222)
Q Consensus 189 rv~~~sil~i~vli~~~~~Qv~~lk~fF~~Kk 220 (222)
|++|||++++++++++++.|+..||.||+.|+
T Consensus 174 Rv~~~Sl~e~~~vv~iSi~Qv~ilk~fFt~~r 205 (209)
T KOG1693|consen 174 RVTWWSLLEIIAVVVISIAQVFILKFFFTDRR 205 (209)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHhccC
Confidence 99999999999999999999999999999876
No 5
>PF01105 EMP24_GP25L: emp24/gp25L/p24 family/GOLD; InterPro: IPR009038 The GOLD (for Golgi dynamics) domain is a protein module found in several eukaryotic Golgi and lipid-traffic proteins. It is typically between 90 and 150 amino acids long. Most of the size difference observed in the GOLD-domain superfamily is traceable to a single large low-complexity insert that is seen in some versions of the domain. With the exception of the p24 proteins, which have a simple architecture with the GOLD domain as their only globular domain, all other GOLD-domain proteins contain additional conserved globular domains. In these proteins, the GOLD domain co-occurs with lipid-, sterol- or fatty acid-binding domains such as PH, CRAL-TRIO, FYVE oxysterol binding- and acyl CoA-binding domains, suggesting that these proteins may interact with membranes. The GOLD domain can also be found associated with a RUN domain, which may have a role in the interaction of various proteins with cytoskeletal filaments. The GOLD domain is predicted to mediate diverse protein-protein interactions []. A secondary structure prediction for the GOLD domain reveals that it is likely to adopt a compact all-beta-fold structure with six to seven strands. Most of the sequence conservation is centred on the hydrophobic cores that support these predicted strands. The predicted secondary-structure elements and the size of the conserved core of the domain suggests that it may form a beta- sandwich fold with the strands arranged in two beta sheets stacked on each other []. Some proteins known to contain a GOLD domain are listed below: Eukaryotic proteins of the p24 family. Animal Sec14-like proteins. They are involved in secretion. Human Golgi resident protein GCP60. It interacts with the Golgi integral membrane protein Giantin. Yeast oxysterol-binding protein homologue 3 (OSH3). ; GO: 0006810 transport, 0016021 integral to membrane; PDB: 1P23_A 1M23_A.
Probab=100.00 E-value=1.8e-39 Score=255.76 Aligned_cols=180 Identities=30% Similarity=0.563 Sum_probs=5.6
Q ss_pred eEEEEEcCCCcceeeEEcCCCcEEEEEEEEeeCCCCCCCCeeEEEEE--CCCCCeEEeeecc-ceeeEEEEeeccceeee
Q 027560 34 AIWLQIPSSGTKCVSEEINSNVVVLADYYVIDEAHPEHPPTVSAKVT--SPYGNNLHHNENV-THGQFAFTTTEAGNYMA 110 (222)
Q Consensus 34 ~l~f~i~~~~~~Cf~e~v~~~~~i~~~y~v~~~~~~~~~~~i~v~v~--~p~g~~v~~~~~~-~~~~f~f~~~~~G~y~i 110 (222)
|++|+|+||+++||++++++|+.+.++|.+.+++ ++. ++++.|+ +|+|+.++.+... ++|+|+|+++++|+|++
T Consensus 1 a~~f~l~~g~~~Cf~e~v~~~~~i~~~y~v~~~~--~~~-~v~~~i~~~~~~~~~i~~~~~~~~~~~f~f~~~~~G~y~i 77 (183)
T PF01105_consen 1 ALTFELEPGETECFYEEVPKGTTIRGSYRVTDGG--GAY-DVDFTIRDPDPNGEVIYSKSDKESEGSFSFTAKESGEYQI 77 (183)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred CEEEEECCCCcEEEEEEcCCCcEEEEEEEEeecc--ccc-eEEEEEEecccCCceeeeecccccCCcEEEEeccCCCEEE
Confidence 6899999999999999999999999999998753 234 9999999 5556888888555 45799999999999999
Q ss_pred eeeeCCCCCCcccEEEEEEEEecccccchhhhhhccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHH
Q 027560 111 CFWLGSNPQKVADATLGLDWRIGFSAKDWESVAKKDKIEGVELHLKRLEAQVQSIHENLLFLKHREAEMREVSEVTNSRV 190 (222)
Q Consensus 111 Cf~n~~~~~~~~~~~v~f~i~~g~~~~d~~~~a~~e~l~~l~~~l~~l~~~l~~I~~eq~~~~~re~~~~~~~est~~rv 190 (222)
||+|+.+.... .+.|+|+++.|.++.|+++.++++++++++.+|+++...++.|+++|+|++.|+.+|+++++++++|+
T Consensus 78 Cf~n~~~~~~~-~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~l~~i~~~q~~~~~r~~~~~~~~es~~~~i 156 (183)
T PF01105_consen 78 CFDNSSSSFSP-SKRVSFDIDVGNENKDYKNVAKKEHLDPLEESLEKLESNLKEIKDEQKYLREREERHRQLNESTNSRI 156 (183)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred EEEcCCCCccc-cEEEEEEEEEeecccchhhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhheE
Confidence 99998764211 38999999998776677788899999999999999999999999999999999999999999999999
Q ss_pred HHHHhHHHHHHHHHHHHHHHHHHHHhh
Q 027560 191 AWLSILSLGVCIAVSSLQLWYLTRYFQ 217 (222)
Q Consensus 191 ~~~sil~i~vli~~~~~Qv~~lk~fF~ 217 (222)
+||+++++++++++++||+++||+||+
T Consensus 157 ~~~si~~~~vli~~~~~Qv~~lk~~f~ 183 (183)
T PF01105_consen 157 MWWSIIQIVVLILVSVWQVYYLKKFFK 183 (183)
T ss_dssp ---------------------HHHHHH
T ss_pred EhHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 999999999999999999999999996
No 6
>KOG3287 consensus Membrane trafficking protein, emp24/gp25L/p24 family [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=4.1e-35 Score=228.03 Aligned_cols=184 Identities=21% Similarity=0.346 Sum_probs=155.8
Q ss_pred eeeEEEEEcCCCcceeeEEcCCCcEEEEEEEEeeCCCCCCCCeeEEEEECCCCCeEEeeeccceeeEEEEeeccceeeee
Q 027560 32 TEAIWLQIPSSGTKCVSEEINSNVVVLADYYVIDEAHPEHPPTVSAKVTSPYGNNLHHNENVTHGQFAFTTTEAGNYMAC 111 (222)
Q Consensus 32 ~~~l~f~i~~~~~~Cf~e~v~~~~~i~~~y~v~~~~~~~~~~~i~v~v~~p~g~~v~~~~~~~~~~f~f~~~~~G~y~iC 111 (222)
...+++.||||+++|||+.++++..+...|+|++| +|+ . +|++.+.+|.|+++.....+.+|.+++.+.++|.|++|
T Consensus 33 d~dftv~ipAGk~eCf~Q~v~~~~tle~eyQVi~G-~GD-l-~i~Ftl~~P~G~~lv~~q~k~dg~ht~e~~e~GdY~~C 109 (236)
T KOG3287|consen 33 DYDFTVMIPAGKTECFYQPVPQGATLEVEYQVIDG-AGD-L-DIDFTLLNPAGEVLVSDQRKVDGVHTVEVTETGDYQVC 109 (236)
T ss_pred ccceEEEecCCCceeeeeeccCCeEEEEEEEEEec-CCc-c-ceeeEEeCCCccEEeecccccCceeEeeccCCcceEEE
Confidence 45678999999999999999999999999999987 433 4 99999999999999998889999999999999999999
Q ss_pred eeeCCCCCCcccEEEEEEE--Ee-cccc---cchhhhhhc-----cccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 027560 112 FWLGSNPQKVADATLGLDW--RI-GFSA---KDWESVAKK-----DKIEGVELHLKRLEAQVQSIHENLLFLKHREAEMR 180 (222)
Q Consensus 112 f~n~~~~~~~~~~~v~f~i--~~-g~~~---~d~~~~a~~-----e~l~~l~~~l~~l~~~l~~I~~eq~~~~~re~~~~ 180 (222)
|+|+.+..+. +.|.|++ +. |+.. .+|++-++. -.+++++..+..+...+..+...|..+|.||.|+|
T Consensus 110 fDNsFS~fs~--K~Vffeli~~~~g~~~e~~e~w~k~~e~~~~Ld~kl~di~~~i~~i~~nl~k~~~~q~~lRa~EaRDr 187 (236)
T KOG3287|consen 110 FDNSFSTFSR--KLVFFELILDAHGEFYEGDETWHKYKERTEQLDVKLDDIEDSIGTIKNNLNKMWQYQALLRAREARDR 187 (236)
T ss_pred EcCccccccc--eEEEEEEEeccccchhccchhHhhhhhhhhhhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhH
Confidence 9999876544 4555555 21 3322 223222221 24667888888888888888999999999999999
Q ss_pred HHHHHHhHHHHHHHhHHHHHHHHHHHHHHHHHHHHhhhcc
Q 027560 181 EVSEVTNSRVAWLSILSLGVCIAVSSLQLWYLTRYFQKKK 220 (222)
Q Consensus 181 ~~~est~~rv~~~sil~i~vli~~~~~Qv~~lk~fF~~Kk 220 (222)
.+.+|+..||.|||.+|+.+||+++..||++|||+|+.|+
T Consensus 188 ~L~esNf~rVN~WS~vq~~vmi~v~~iQVf~lrslFe~~~ 227 (236)
T KOG3287|consen 188 NLQESNFDRVNFWSMVQTLVMILVGIIQVFMLRSLFEVKS 227 (236)
T ss_pred HHHhcccchhhHHHHHHHHHHHHHhhhhhhhhHHHhcCCC
Confidence 9999999999999999999999999999999999999875
No 7
>smart00557 IG_FLMN Filamin-type immunoglobulin domains. These form a rod-like structure in the actin-binding cytoskeleton protein, filamin. The C-terminal repeats of filamin bind beta1-integrin (CD29).
Probab=94.85 E-value=0.49 Score=32.78 Aligned_cols=43 Identities=26% Similarity=0.517 Sum_probs=31.4
Q ss_pred eeEEEEECCCCCeEEee-eccceee--EEEEeeccceeeeeeeeCC
Q 027560 74 TVSAKVTSPYGNNLHHN-ENVTHGQ--FAFTTTEAGNYMACFWLGS 116 (222)
Q Consensus 74 ~i~v~v~~p~g~~v~~~-~~~~~~~--f~f~~~~~G~y~iCf~n~~ 116 (222)
.+.+.|.+|+|+.+.-+ .+..+|. .+|++...|.|.+.+.-..
T Consensus 33 ~~~v~i~~p~g~~~~~~v~d~~dGty~v~y~P~~~G~~~i~V~~~g 78 (93)
T smart00557 33 ELEVEVTGPSGKKVPVEVKDNGDGTYTVSYTPTEPGDYTVTVKFGG 78 (93)
T ss_pred cEEEEEECCCCCeeEeEEEeCCCCEEEEEEEeCCCEeEEEEEEECC
Confidence 89999999999654332 3334454 4788889999999987544
No 8
>PF13473 Cupredoxin_1: Cupredoxin-like domain; PDB: 1IBZ_D 1IC0_E 1IBY_D.
Probab=93.11 E-value=0.36 Score=34.14 Aligned_cols=71 Identities=10% Similarity=0.087 Sum_probs=27.7
Q ss_pred eeeEEEEEcCCCccee--eEEcCCCcEEEEEEEEeeCCCCCCCCeeEEEEECCCCCeEEeeeccceeeEEEEeeccceee
Q 027560 32 TEAIWLQIPSSGTKCV--SEEINSNVVVLADYYVIDEAHPEHPPTVSAKVTSPYGNNLHHNENVTHGQFAFTTTEAGNYM 109 (222)
Q Consensus 32 ~~~l~f~i~~~~~~Cf--~e~v~~~~~i~~~y~v~~~~~~~~~~~i~v~v~~p~g~~v~~~~~~~~~~f~f~~~~~G~y~ 109 (222)
.+.+.+.+.++ .|- ...+++|+.+.+.+.-.+. . .-++.+.+ ...-..-..-....+.|++.++|+|.
T Consensus 20 ~~~v~I~~~~~--~f~P~~i~v~~G~~v~l~~~N~~~-----~-~h~~~i~~--~~~~~~l~~g~~~~~~f~~~~~G~y~ 89 (104)
T PF13473_consen 20 AQTVTITVTDF--GFSPSTITVKAGQPVTLTFTNNDS-----R-PHEFVIPD--LGISKVLPPGETATVTFTPLKPGEYE 89 (104)
T ss_dssp ----------E--EEES-EEEEETTCEEEEEEEE-SS-----S--EEEEEGG--GTEEEEE-TT-EEEEEEEE-S-EEEE
T ss_pred cccccccccCC--eEecCEEEEcCCCeEEEEEEECCC-----C-cEEEEECC--CceEEEECCCCEEEEEEcCCCCEEEE
Confidence 34445555433 222 3456677777766644321 1 33344333 11111111122457888889999999
Q ss_pred e-ee
Q 027560 110 A-CF 112 (222)
Q Consensus 110 i-Cf 112 (222)
+ |=
T Consensus 90 ~~C~ 93 (104)
T PF13473_consen 90 FYCT 93 (104)
T ss_dssp EB-S
T ss_pred EEcC
Confidence 4 54
No 9
>PF04151 PPC: Bacterial pre-peptidase C-terminal domain; InterPro: IPR007280 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. This domain is normally found at the C terminus of secreted archaeal and bacterial peptidases, the majority of which belong to MEROPS peptidase families M4 (vibriolysin, IPR001570 from INTERPRO), M9A amd M9B (microbial collangenase, IPR002169 from INTERPRO), M28 (aminopeptidase Ap1, IPR007484 from INTERPRO) and S8 (subtilisin family peptidases, IPR000209 from INTERPRO).; GO: 0008233 peptidase activity, 0006508 proteolysis; PDB: 4DY5_B 4DXZ_A 4DY3_B 3JQW_A 3JQX_C 1NQJ_B 1NQD_A 2O8O_A 1WMF_A 1WME_A ....
Probab=92.79 E-value=0.71 Score=30.07 Aligned_cols=61 Identities=16% Similarity=0.206 Sum_probs=41.4
Q ss_pred ceeeEEcCCCcEEEEEEEEeeCCCCCCCCeeEEEEECCCCCeEEeeecc-----ceeeEEEEeeccceeeeee
Q 027560 45 KCVSEEINSNVVVLADYYVIDEAHPEHPPTVSAKVTSPYGNNLHHNENV-----THGQFAFTTTEAGNYMACF 112 (222)
Q Consensus 45 ~Cf~e~v~~~~~i~~~y~v~~~~~~~~~~~i~v~v~~p~g~~v~~~~~~-----~~~~f~f~~~~~G~y~iCf 112 (222)
..|..++++|+.+.+.. ... .. +.++.+++++|..+...... ......|+++.+|.|.+=+
T Consensus 3 D~y~f~v~ag~~l~i~l--~~~----~~-d~dl~l~~~~g~~~~~~d~~~~~~~~~~~i~~~~~~~GtYyi~V 68 (70)
T PF04151_consen 3 DYYSFTVPAGGTLTIDL--SGG----SG-DADLYLYDSNGNSLASYDDSSQSGGNDESITFTAPAAGTYYIRV 68 (70)
T ss_dssp EEEEEEESTTEEEEEEE--CET----TS-SEEEEEEETTSSSCEECCCCTCETTSEEEEEEEESSSEEEEEEE
T ss_pred EEEEEEEcCCCEEEEEE--cCC----CC-CeEEEEEcCCCCchhhheecCCCCCCccEEEEEcCCCEEEEEEE
Confidence 45777888988766553 322 12 67799999998776653222 2355778889999998754
No 10
>PF01835 A2M_N: MG2 domain; InterPro: IPR002890 The proteinase-binding alpha-macroglobulins (A2M) [] are large glycoproteins found in the plasma of vertebrates, in the hemolymph of some invertebrates and in reptilian and avian egg white. A2M-like proteins are able to inhibit all four classes of proteinases by a 'trapping' mechanism. They have a peptide stretch, called the 'bait region', which contains specific cleavage sites for different proteinases. When a proteinase cleaves the bait region, a conformational change is induced in the protein, thus trapping the proteinase. The entrapped enzyme remains active against low molecular weight substrates, whilst its activity toward larger substrates is greatly reduced, due to steric hindrance. Following cleavage in the bait region, a thiol ester bond, formed between the side chains of a cysteine and a glutamine, is cleaved and mediates the covalent binding of the A2M-like protein to the proteinase. This family includes the N-terminal region of the alpha-2-macroglobulin family. The inhibitor domains belong to MEROPS inhibitor family I39.; GO: 0004866 endopeptidase inhibitor activity; PDB: 2B39_B 3KLS_B 3PRX_C 3KM9_B 3PVM_C 3CU7_A 4E0S_A 4A5W_A 4ACQ_C 2P9R_B ....
Probab=91.50 E-value=3.4 Score=28.62 Aligned_cols=62 Identities=19% Similarity=0.229 Sum_probs=39.8
Q ss_pred CCcEEEEEEEEeeCC--C--CCCCCeeEEEEECCCCCeEEeeec-c--ceeeEEEEe--e---ccceeeeeeeeC
Q 027560 53 SNVVVLADYYVIDEA--H--PEHPPTVSAKVTSPYGNNLHHNEN-V--THGQFAFTT--T---EAGNYMACFWLG 115 (222)
Q Consensus 53 ~~~~i~~~y~v~~~~--~--~~~~~~i~v~v~~p~g~~v~~~~~-~--~~~~f~f~~--~---~~G~y~iCf~n~ 115 (222)
.|+.+.+.--+.+.+ . +.. .++.+.|.||+|+.+.++.. . ..|.+++.. + ..|.|++=+...
T Consensus 13 PGetV~~~~~~~~~~~~~~~~~~-~~~~v~i~dp~g~~v~~~~~~~~~~~G~~~~~~~lp~~~~~G~y~i~~~~~ 86 (99)
T PF01835_consen 13 PGETVHFRAIVRDLDNDFKPPAN-SPVTVTIKDPSGNEVFRWSVNTTNENGIFSGSFQLPDDAPLGTYTIRVKTD 86 (99)
T ss_dssp TTSEEEEEEEEEEECTTCSCESS-EEEEEEEEETTSEEEEEEEEEETTCTTEEEEEEE--SS---EEEEEEEEET
T ss_pred CCCEEEEEEEEeccccccccccC-CceEEEEECCCCCEEEEEEeeeeCCCCEEEEEEECCCCCCCEeEEEEEEEc
Confidence 477777776655433 1 122 39999999999999987665 2 345554433 2 359999888764
No 11
>PRK02710 plastocyanin; Provisional
Probab=89.50 E-value=6.4 Score=28.57 Aligned_cols=93 Identities=13% Similarity=0.078 Sum_probs=45.9
Q ss_pred hhHHHHHHHHHHHhhhcccCeeeeEEEEEcCCC-cceee---EEcCCCcEEEEEEEEeeCCCCCCCCeeEEEEECCCCCe
Q 027560 11 ATVLPLILLLCLACYICVVPVTEAIWLQIPSSG-TKCVS---EEINSNVVVLADYYVIDEAHPEHPPTVSAKVTSPYGNN 86 (222)
Q Consensus 11 ~~~~~~~~~l~~~~~~~~~~~~~~l~f~i~~~~-~~Cf~---e~v~~~~~i~~~y~v~~~~~~~~~~~i~v~v~~p~g~~ 86 (222)
..+++.|++++.++..+....+...++.+.... .-.|. .+++.|+.|. +...+. ... ++.+ .+..+ .
T Consensus 7 ~~~~~~~~~~~~~~~~~~~a~a~~~~V~~~~~~~~~~F~P~~i~v~~Gd~V~--~~N~~~---~~H-~v~~--~~~~~-~ 77 (119)
T PRK02710 7 SIAAALVAVVSSFGLGVSSASAETVEVKMGSDAGMLAFEPSTLTIKAGDTVK--WVNNKL---APH-NAVF--DGAKE-L 77 (119)
T ss_pred HHHHHHHHHHHHHHhcccccccceEEEEEccCCCeeEEeCCEEEEcCCCEEE--EEECCC---CCc-eEEe--cCCcc-c
Confidence 344444555555554455556677778776432 34555 3567788654 432221 111 3332 22211 1
Q ss_pred EEee-eccceeeEEEEeeccceee-eee
Q 027560 87 LHHN-ENVTHGQFAFTTTEAGNYM-ACF 112 (222)
Q Consensus 87 v~~~-~~~~~~~f~f~~~~~G~y~-iCf 112 (222)
.+.. .-.+...++++...+|.|. +|-
T Consensus 78 ~~~~~~~~pg~t~~~tF~~~G~y~y~C~ 105 (119)
T PRK02710 78 SHKDLAFAPGESWEETFSEAGTYTYYCE 105 (119)
T ss_pred cccccccCCCCEEEEEecCCEEEEEEcC
Confidence 1111 1122335666666799998 564
No 12
>PF00630 Filamin: Filamin/ABP280 repeat; InterPro: IPR017868 The many different actin cross-linking proteins share a common architecture, consisting of a globular actin-binding domain and an extended rod. Whereas their actin-binding domains consist of two calponin homology domains (see IPR001715 from INTERPRO), their rods fall into three families. The rod domain of the family including the Dictyostelium discoideum (Slime mould) gelation factor (ABP120) and human filamin (ABP280) is constructed from tandem repeats of a 100-residue motif that is glycine and proline rich []. The gelation factor's rod contains 6 copies of the repeat, whereas filamin has a rod constructed from 24 repeats. The resolution of the 3D structure of rod repeats from the gelation factor has shown that they consist of a beta-sandwich, formed by two beta-sheets arranged in an immunoglobulin-like fold [, ]. Because conserved residues that form the core of the repeats are preserved in filamin, the repeat structure should be common to the members of the gelation factor/filamin family. The head to tail homodimerisation is crucial to the function of the ABP120 and ABP280 proteins. This interaction involves a small portion at the distal end of the rod domains. For the gelation factor it has been shown that the carboxy-terminal repeat 6 dimerises through a double edge-to-edge extension of the beta-sheet and that repeat 5 contributes to dimerisation to some extent [, , ].; PDB: 2DI9_A 2EEC_A 2DIC_A 2EEA_A 2DMC_A 2EE9_A 2D7O_A 2D7N_A 2K7P_A 2NQC_A ....
Probab=87.15 E-value=3.5 Score=28.47 Aligned_cols=43 Identities=23% Similarity=0.383 Sum_probs=29.6
Q ss_pred eeEEEEECCCCC----eE-Eeeeccceee--EEEEeeccceeeeeeeeCC
Q 027560 74 TVSAKVTSPYGN----NL-HHNENVTHGQ--FAFTTTEAGNYMACFWLGS 116 (222)
Q Consensus 74 ~i~v~v~~p~g~----~v-~~~~~~~~~~--f~f~~~~~G~y~iCf~n~~ 116 (222)
.+.+.|.+|++. .+ ..-.+..+|. .+|+++..|.|++.+.-..
T Consensus 43 ~~~v~i~~p~~~~~~~~~~~~v~~~~~G~y~v~y~p~~~G~y~i~V~~~g 92 (101)
T PF00630_consen 43 EFQVTITSPDGKEEPVPVPVEVIDNGDGTYTVSYTPTEPGKYKISVKING 92 (101)
T ss_dssp EEEEEEESSSSESS--EEEEEEEEESSSEEEEEEEESSSEEEEEEEEESS
T ss_pred eeEEEEeCCCCCccccccceEEEECCCCEEEEEEEeCccEeEEEEEEECC
Confidence 788999999986 32 2222334554 4778888999999886543
No 13
>PF13860 FlgD_ig: FlgD Ig-like domain; PDB: 3C12_A 3OSV_A.
Probab=84.64 E-value=8 Score=25.92 Aligned_cols=32 Identities=9% Similarity=0.155 Sum_probs=23.5
Q ss_pred cEEEEEEEEeeCCCCCCCCeeEEEEECCCCCeEEeee
Q 027560 55 VVVLADYYVIDEAHPEHPPTVSAKVTSPYGNNLHHNE 91 (222)
Q Consensus 55 ~~i~~~y~v~~~~~~~~~~~i~v~v~~p~g~~v~~~~ 91 (222)
....+.|.+..+ . ..+.+.|+|.+|++|++..
T Consensus 12 ~~~~~~~~l~~~----a-~~v~v~I~d~~G~~V~t~~ 43 (81)
T PF13860_consen 12 TKGSIEYTLPED----A-DNVTVTIYDSNGQVVRTIS 43 (81)
T ss_dssp CEEEEEEEECSS----C-EEEEEEEEETTS-EEEEEE
T ss_pred EEEEEEEeCCCc----c-cEEEEEEEcCCCCEEEEEE
Confidence 477888877532 2 2899999999999997753
No 14
>PF11589 DUF3244: Domain of unknown function (DUF3244); InterPro: IPR021638 This family of proteins with unknown function appear to be restricted to Bacteroidetes. The protein may have an immunoglobulin-like beta-sandwich fold however this cannot be confirmed. ; PDB: 3D33_B 3SD2_A.
Probab=83.49 E-value=5.5 Score=28.25 Aligned_cols=57 Identities=11% Similarity=0.096 Sum_probs=36.4
Q ss_pred CcEEEEEEEEeeCCCCCCCCeeEEEEECCCCCeEEeeeccc--eeeEEEEe--eccceeeeeeeeCCC
Q 027560 54 NVVVLADYYVIDEAHPEHPPTVSAKVTSPYGNNLHHNENVT--HGQFAFTT--TEAGNYMACFWLGSN 117 (222)
Q Consensus 54 ~~~i~~~y~v~~~~~~~~~~~i~v~v~~p~g~~v~~~~~~~--~~~f~f~~--~~~G~y~iCf~n~~~ 117 (222)
|..+.+.|... . .++.+.|.|.+|+++++..-.. ....++.. ...|.|.+=+.+...
T Consensus 36 ~~~l~I~F~~~------~-~~vtI~I~d~~G~vVy~~~~~~~~~~~~~I~L~~~~~G~Y~l~i~~~~g 96 (106)
T PF11589_consen 36 GNNLSIEFESP------I-GDVTITIKDSTGNVVYSETVSNSAGQSITIDLNGLPSGEYTLEITNGNG 96 (106)
T ss_dssp TTEEEEEESS---------SEEEEEEEETT--EEEEEEESCGGTTEEEEE-TTS-SEEEEEEEEECTC
T ss_pred CCEEEEEEcCC------C-CCEEEEEEeCCCCEEEEEEccCCCCcEEEEEeCCCCCccEEEEEEeCCC
Confidence 56677666321 1 3899999999999999875333 22355555 468999999988654
No 15
>PF05753 TRAP_beta: Translocon-associated protein beta (TRAPB); InterPro: IPR008856 This family consists of several eukaryotic translocon-associated protein beta (TRAPB) or signal sequence receptor beta subunit (SSR-beta) proteins. The normal translocation of nascent polypeptides into the lumen of the endoplasmic reticulum (ER) is thought to be aided in part by a translocon-associated protein (TRAP) complex consisting of 4 protein subunits. The association of mature proteins with the ER and Golgi, or other intracellular locales, such as lysosomes, depends on the initial targeting of the nascent polypeptide to the ER membrane. A similar scenario must also exist for proteins destined for secretion [].; GO: 0005783 endoplasmic reticulum, 0016021 integral to membrane
Probab=82.64 E-value=17 Score=28.67 Aligned_cols=30 Identities=13% Similarity=0.164 Sum_probs=21.9
Q ss_pred EEcCCCcEEEEEEEEeeCCCCCCCCeeEEEEEC
Q 027560 49 EEINSNVVVLADYYVIDEAHPEHPPTVSAKVTS 81 (222)
Q Consensus 49 e~v~~~~~i~~~y~v~~~~~~~~~~~i~v~v~~ 81 (222)
..+.+|..+.+.|.+...+ +. .-.++.+.|
T Consensus 32 ~~~v~g~~v~V~~~iyN~G--~~-~A~dV~l~D 61 (181)
T PF05753_consen 32 KYLVEGEDVTVTYTIYNVG--SS-AAYDVKLTD 61 (181)
T ss_pred ccccCCcEEEEEEEEEECC--CC-eEEEEEEEC
Confidence 4556699999999997542 22 377888888
No 16
>PRK10378 inactive ferrous ion transporter periplasmic protein EfeO; Provisional
Probab=82.40 E-value=8.2 Score=34.00 Aligned_cols=69 Identities=10% Similarity=0.300 Sum_probs=36.7
Q ss_pred eeeEEEEEcCCCcceeeE--EcCCCcEEEEEEEEeeCCCCCCCCeeEEEEECCCCCeEEeeeccc---eeeEEEEeeccc
Q 027560 32 TEAIWLQIPSSGTKCVSE--EINSNVVVLADYYVIDEAHPEHPPTVSAKVTSPYGNNLHHNENVT---HGQFAFTTTEAG 106 (222)
Q Consensus 32 ~~~l~f~i~~~~~~Cf~e--~v~~~~~i~~~y~v~~~~~~~~~~~i~v~v~~p~g~~v~~~~~~~---~~~f~f~~~~~G 106 (222)
...+.+.+.++ .|--. .++.|. ..|.|...+ .. ...+.+.++ +.++-+.+... .+.+.++. ++|
T Consensus 29 ~~~v~Vti~d~--~c~p~~~tVpAG~---~~f~V~N~~---~~-~~Efe~~~~-~~vv~e~EnIaPG~s~~l~~~L-~pG 97 (375)
T PRK10378 29 IPQVKVTVNDK--QCEPMTLTVNAGK---TQFIIQNHS---QK-ALEWEILKG-VMVVEERENIAPGFSQKMTANL-QPG 97 (375)
T ss_pred CCceEEEEECC--ccccCceeeCCCC---EEEEEEeCC---CC-cceEEeecc-ccccccccccCCCCceEEEEec-CCc
Confidence 34566777744 56554 567785 445555331 12 556666642 23333333332 23454433 699
Q ss_pred eeee-e
Q 027560 107 NYMA-C 111 (222)
Q Consensus 107 ~y~i-C 111 (222)
.|.+ |
T Consensus 98 tY~~~C 103 (375)
T PRK10378 98 EYDMTC 103 (375)
T ss_pred eEEeec
Confidence 9997 8
No 17
>PF05738 Cna_B: Cna protein B-type domain; InterPro: IPR008454 This entry represents a repeated B region domain found in the collagen-binding surface protein Cna in Staphylococcus aureus, as well as other related domains. The B region domain of Cna has a prealbumin-like beta-sandwich fold of seven strands in two sheets with a Greek key topology []. However, this domain does not mediate collagen binding, the IPR008456 from INTERPRO region carries out that function; instead it appears to form a stalk that presents the ligand binding domain away from the bacterial cell surface. Cna is a collagen-binding MSCRAMM (Microbial Surface Component Recognizing Adhesive Matrix Molecules), and is necessary and sufficient for S. aureus cells to adhere to cartilage.; PDB: 2X5P_A 3RKP_A 3KPT_A 1VLF_T 1TI2_F 1TI6_D 1TI4_J 1VLE_V 1VLD_X 3PF2_A ....
Probab=79.99 E-value=5.1 Score=25.69 Aligned_cols=42 Identities=14% Similarity=0.203 Sum_probs=33.3
Q ss_pred eeEEEEECCCCCeEEe--eeccceeeEEEEeeccceeeeeeeeC
Q 027560 74 TVSAKVTSPYGNNLHH--NENVTHGQFAFTTTEAGNYMACFWLG 115 (222)
Q Consensus 74 ~i~v~v~~p~g~~v~~--~~~~~~~~f~f~~~~~G~y~iCf~n~ 115 (222)
++.|.+++.++..+.. ..-...|.+.|.--.+|.|.+=....
T Consensus 3 Ga~f~L~~~~~~~~~~~~~~Td~~G~~~f~~L~~G~Y~l~E~~a 46 (70)
T PF05738_consen 3 GATFELYDEDGNEVIEVTVTTDENGKYTFKNLPPGTYTLKETKA 46 (70)
T ss_dssp TEEEEEEETTSEEEEEEEEEGGTTSEEEEEEEESEEEEEEEEET
T ss_pred CeEEEEEECCCCEEEEEEEEECCCCEEEEeecCCeEEEEEEEEC
Confidence 6788899988887765 33345799999988999999988763
No 18
>KOG1693 consensus emp24/gp25L/p24 family of membrane trafficking proteins [Intracellular trafficking, secretion, and vesicular transport]
Probab=79.21 E-value=31 Score=27.59 Aligned_cols=159 Identities=11% Similarity=0.079 Sum_probs=80.5
Q ss_pred eeeEEEEEcCCCcceee-EEcCCCcEEEEEEEEeeCCCCCCCCeeEEEEECCCCCeEEeeeccceeeEEEEeeccceee-
Q 027560 32 TEAIWLQIPSSGTKCVS-EEINSNVVVLADYYVIDEAHPEHPPTVSAKVTSPYGNNLHHNENVTHGQFAFTTTEAGNYM- 109 (222)
Q Consensus 32 ~~~l~f~i~~~~~~Cf~-e~v~~~~~i~~~y~v~~~~~~~~~~~i~v~v~~p~g~~v~~~~~~~~~~f~f~~~~~G~y~- 109 (222)
-++++-+++.+...|-+ ..|..|..+.+.|.+.+++ .. .|--.-....+...+..+. .|.|.|=. +++|.
T Consensus 33 KqC~Y~d~~~~~~~~~~~fqV~tGG~fDVD~~I~aPd---gk-vI~~~~kk~~~~~~f~ae~--~G~Y~fCF--sN~fst 104 (209)
T KOG1693|consen 33 KQCFYEDLKKDDDTTSFEFQVQTGGHFDVDYDIEAPD---GK-VIYSEKKKRYDSFLFKAEG--KGEYTFCF--SNEFST 104 (209)
T ss_pred hhheeeecccCCceEEEEEEEEeCCceeeEEEEECCC---CC-EEeeccccccccEEEEEec--ceEEEEEe--cCcccc
Confidence 57899999977775555 4688899999999998763 22 3322222234455555544 45555533 22222
Q ss_pred eeeeeCCCCCCcccEEEEEEEEecccccchhhhhhccccchHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHh
Q 027560 110 ACFWLGSNPQKVADATLGLDWRIGFSAKDWESVAKKDKIEGVELHLKRLEAQVQSIH--ENLLFLKHREAEMREVSEVTN 187 (222)
Q Consensus 110 iCf~n~~~~~~~~~~~v~f~i~~g~~~~d~~~~a~~e~l~~l~~~l~~l~~~l~~I~--~eq~~~~~re~~~~~~~est~ 187 (222)
+|=.-..-....+. .-..+-+.+..|+....-..-+..+.+.|+.+.+.....+ +.+++.+....++|-+.=|..
T Consensus 105 f~~Kiv~~~~q~~~---~~~~~~~~~~~~~~~~~mena~~~I~~~L~~I~~~q~y~R~RE~rn~~tv~st~~Rv~~~Sl~ 181 (209)
T KOG1693|consen 105 FSHKIVYMDFQVGE---EPPLHPAVSNRDTALTQMENAIVEIHRALNKIDDTQTYYRLREARNRSTVESTNSRVTWWSLL 181 (209)
T ss_pred ccceEeeehhhhcc---ccccCccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCccchhcccchhhHHHHH
Confidence 11111000000000 0001111112232222112235677788888877776554 445566666666666665655
Q ss_pred HH--HHHHHhHHHHHH
Q 027560 188 SR--VAWLSILSLGVC 201 (222)
Q Consensus 188 ~r--v~~~sil~i~vl 201 (222)
.. ++..|+.|+.++
T Consensus 182 e~~~vv~iSi~Qv~il 197 (209)
T KOG1693|consen 182 EIIAVVVISIAQVFIL 197 (209)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 44 344555565554
No 19
>PF13897 GOLD_2: Golgi-dynamics membrane-trafficking
Probab=76.78 E-value=3.3 Score=30.86 Aligned_cols=25 Identities=16% Similarity=0.036 Sum_probs=18.6
Q ss_pred EEeeccceeeeeeeeCCCCCCcccE
Q 027560 100 FTTTEAGNYMACFWLGSNPQKVADA 124 (222)
Q Consensus 100 f~~~~~G~y~iCf~n~~~~~~~~~~ 124 (222)
+..+.+|.|-++|+|+.+.+.+|.+
T Consensus 105 ~~c~~~GvYvLkFDNSYS~~rsK~l 129 (136)
T PF13897_consen 105 HTCPGPGVYVLKFDNSYSWFRSKKL 129 (136)
T ss_pred EECCCCeEEEEEeeCcceeEEeeEE
Confidence 4557899999999999876534433
No 20
>PRK05842 flgD flagellar basal body rod modification protein; Reviewed
Probab=75.04 E-value=16 Score=31.12 Aligned_cols=59 Identities=8% Similarity=0.041 Sum_probs=37.9
Q ss_pred cEEEEEEEEeeCCCCCCCCeeEEEEECCCCCeEEeeecc----ceeeEEEEee---------ccceeeeeeee
Q 027560 55 VVVLADYYVIDEAHPEHPPTVSAKVTSPYGNNLHHNENV----THGQFAFTTT---------EAGNYMACFWL 114 (222)
Q Consensus 55 ~~i~~~y~v~~~~~~~~~~~i~v~v~~p~g~~v~~~~~~----~~~~f~f~~~---------~~G~y~iCf~n 114 (222)
..+.+.|.+-.+...+.. .+.+.|+|.+|++|++-... ..|.+.|.-. ..|.|+|=+..
T Consensus 149 ~~~~~~~~l~~~~~~~a~-~v~I~I~Da~G~vVrTi~l~~~~~~aG~~~f~WDG~d~~G~~~p~G~Yt~~V~a 220 (295)
T PRK05842 149 NKLSFSLFFDEKIDASKG-VPAIQILNENNELVKTIPLKDYNGQKGYINFEWDGLNEKGEKVPKGNYKIKAEY 220 (295)
T ss_pred CceEEEEeccccccccCc-eEEEEEEcCCCCEEEEEecCcccCCCcceeEEECCCCCCCCcCCCcceEEEEEE
Confidence 355666655321111222 89999999999999875432 2477777642 35999998864
No 21
>PF13620 CarboxypepD_reg: Carboxypeptidase regulatory-like domain; PDB: 3MN8_D 3P0D_I 3KCP_A 2B59_B 1UWY_A 1H8L_A 1QMU_A 2NSM_A.
Probab=75.01 E-value=4.3 Score=26.78 Aligned_cols=44 Identities=18% Similarity=0.324 Sum_probs=29.5
Q ss_pred CeeEEEEECCCCCeEEeeeccceeeEEEEeeccceeeeeeeeCC
Q 027560 73 PTVSAKVTSPYGNNLHHNENVTHGQFAFTTTEAGNYMACFWLGS 116 (222)
Q Consensus 73 ~~i~v~v~~p~g~~v~~~~~~~~~~f~f~~~~~G~y~iCf~n~~ 116 (222)
++..+.+.++++.......-..+|.|.|..-.+|.|.+=+.-..
T Consensus 15 ~~a~V~l~~~~~~~~~~~~Td~~G~f~~~~l~~g~Y~l~v~~~g 58 (82)
T PF13620_consen 15 PGATVTLTDQDGGTVYTTTTDSDGRFSFEGLPPGTYTLRVSAPG 58 (82)
T ss_dssp TT-EEEET--TTTECCEEE--TTSEEEEEEE-SEEEEEEEEBTT
T ss_pred CCEEEEEEEeeCCCEEEEEECCCceEEEEccCCEeEEEEEEECC
Confidence 37888898877776655544568999999666799999986543
No 22
>PF07495 Y_Y_Y: Y_Y_Y domain; InterPro: IPR011123 This region is mostly found at the end of the beta propellers (IPR011110 from INTERPRO) in a family of two component regulators. However they are also found tandemly repeated in Q891H4 from SWISSPROT without other signal conduction domains being present. It is named after the conserved tyrosines found in the alignment. The exact function is not known.; PDB: 3V9F_D 3VA6_B 3OTT_B 4A2M_D 4A2L_B.
Probab=73.14 E-value=20 Score=22.45 Aligned_cols=55 Identities=9% Similarity=0.087 Sum_probs=30.2
Q ss_pred eeEEEEECCCCCeEEeeeccceeeEEEEeeccceeeeeeeeCCCC--CCcccEEEEEEE
Q 027560 74 TVSAKVTSPYGNNLHHNENVTHGQFAFTTTEAGNYMACFWLGSNP--QKVADATLGLDW 130 (222)
Q Consensus 74 ~i~v~v~~p~g~~v~~~~~~~~~~f~f~~~~~G~y~iCf~n~~~~--~~~~~~~v~f~i 130 (222)
.....+.+.+++-+....... .++|+...+|.|++-+...+.. .......+.|.|
T Consensus 9 ~Y~Y~l~g~d~~W~~~~~~~~--~~~~~~L~~G~Y~l~V~a~~~~~~~~~~~~~l~i~I 65 (66)
T PF07495_consen 9 RYRYRLEGFDDEWITLGSYSN--SISYTNLPPGKYTLEVRAKDNNGKWSSDEKSLTITI 65 (66)
T ss_dssp EEEEEEETTESSEEEESSTS---EEEEES--SEEEEEEEEEEETTS-B-SS-EEEEEEE
T ss_pred EEEEEEECCCCeEEECCCCcE--EEEEEeCCCEEEEEEEEEECCCCCcCcccEEEEEEE
Confidence 455556666655433332211 8899999999999999765432 122225565554
No 23
>PRK14081 triple tyrosine motif-containing protein; Provisional
Probab=73.09 E-value=58 Score=31.06 Aligned_cols=57 Identities=14% Similarity=0.097 Sum_probs=38.8
Q ss_pred eeEEEEECCCCCeEEeeeccceeeEEEEeeccceeeeeeeeCCCCCC---cccEEEEEEEE
Q 027560 74 TVSAKVTSPYGNNLHHNENVTHGQFAFTTTEAGNYMACFWLGSNPQK---VADATLGLDWR 131 (222)
Q Consensus 74 ~i~v~v~~p~g~~v~~~~~~~~~~f~f~~~~~G~y~iCf~n~~~~~~---~~~~~v~f~i~ 131 (222)
...+.|+. +|..+...+-.....+.|++..+|.|++=++..+..+. ..+..|++.+.
T Consensus 417 lY~f~ik~-ng~~ve~~~Y~~~~~~~f~P~~~G~Y~IeV~vKdk~S~~~yD~~k~v~l~V~ 476 (667)
T PRK14081 417 RYSFIIKK-DGKEEEKIDYGKNNWVNFIPEEKGNYELEVRVKDKYSDKEYDAHTIVYIKVH 476 (667)
T ss_pred EEEEEEEE-CCEEEEEeecccccEEEEEECCCeeEEEEEEEecccCchhcccceEEEEEEe
Confidence 55555555 56666666556678999999999999988877654321 23456676654
No 24
>PF04728 LPP: Lipoprotein leucine-zipper; InterPro: IPR006817 This repeating sequence, NAKVDQLSNDV, is found in the enterobacterial outer membrane lipoprotein LPP. The outer membrane lipoprotein is the most abundant protein in an Escherichia coli cell. The messenger RNA for the lipoprotein of the E. coli outer membrane codes for a putative precursor, prolipoprotein, which has 20 additional amino acid residues extending from the amino terminus of the lipoprotein.; GO: 0019867 outer membrane; PDB: 1JCC_A 2GUV_C 2GUS_A 1JCD_A 1KFM_A 1T8Z_D 1KFN_A 1EQ7_A.
Probab=72.44 E-value=21 Score=22.39 Aligned_cols=28 Identities=18% Similarity=0.379 Sum_probs=18.9
Q ss_pred ccchHHHHHHHHHHHHHHHHHHHHHHHH
Q 027560 147 KIEGVELHLKRLEAQVQSIHENLLFLKH 174 (222)
Q Consensus 147 ~l~~l~~~l~~l~~~l~~I~~eq~~~~~ 174 (222)
+++.+...++.|...+..+..+.+-++.
T Consensus 4 kid~Ls~dVq~L~~kvdqLs~dv~~lr~ 31 (56)
T PF04728_consen 4 KIDQLSSDVQTLNSKVDQLSSDVNALRA 31 (56)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4566777777777777777777665553
No 25
>PRK06655 flgD flagellar basal body rod modification protein; Reviewed
Probab=71.46 E-value=22 Score=29.04 Aligned_cols=56 Identities=16% Similarity=0.107 Sum_probs=37.8
Q ss_pred cEEEEEEEEeeCCCCCCCCeeEEEEECCCCCeEEeeec--cceeeEEEEe---------eccceeeeeeeeC
Q 027560 55 VVVLADYYVIDEAHPEHPPTVSAKVTSPYGNNLHHNEN--VTHGQFAFTT---------TEAGNYMACFWLG 115 (222)
Q Consensus 55 ~~i~~~y~v~~~~~~~~~~~i~v~v~~p~g~~v~~~~~--~~~~~f~f~~---------~~~G~y~iCf~n~ 115 (222)
....+.|..-++ .. .+.+.|+|.+|++|++-.. .+.|.+.|.- -.+|.|.+=+...
T Consensus 113 ~~~~~~~~l~~~----a~-~vti~I~D~~G~~Vrt~~lg~~~aG~~~f~WDG~d~~G~~lp~G~Yt~~V~A~ 179 (225)
T PRK06655 113 GTTPFGVELPSA----AD-NVTVTITDSAGQVVRTIDLGAQSAGVVSFTWDGTDTDGNALPDGNYTIKASAS 179 (225)
T ss_pred CceEEEEEcCCC----Cc-EEEEEEEcCCCCEEEEEecCCcCCCceeEEECCCCCCCCcCCCeeEEEEEEEE
Confidence 355666665432 23 8999999999999976532 3467777733 2368999888643
No 26
>PF10528 PA14_2: GLEYA domain; InterPro: IPR018871 This presumed domain is found in fungal adhesins and is related to the PA14 domain. ; PDB: 4A3X_A.
Probab=70.21 E-value=11 Score=27.15 Aligned_cols=48 Identities=10% Similarity=0.126 Sum_probs=27.7
Q ss_pred cCCCcceeeEEcCCCcEEEEEEEEeeCCCCCCCCeeEEEEECCCCCeEEee
Q 027560 40 PSSGTKCVSEEINSNVVVLADYYVIDEAHPEHPPTVSAKVTSPYGNNLHHN 90 (222)
Q Consensus 40 ~~~~~~Cf~e~v~~~~~i~~~y~v~~~~~~~~~~~i~v~v~~p~g~~v~~~ 90 (222)
..+...++..++.+|....++.-...++ +. ...++.|++|+|..+...
T Consensus 55 ~~~~~~~~tv~L~aG~yyPiRi~~~N~~--g~-~~~~~~i~~P~G~~~~~~ 102 (113)
T PF10528_consen 55 STGASKSVTVYLTAGTYYPIRIVYANGG--GP-GSFDFSITDPDGTVHTDD 102 (113)
T ss_dssp SS-SEEEEEEEE-TT-BEEEEEEEEE-S--S--EEEEEEEEETT-S--B--
T ss_pred CCCCceEEEEEEECCcEEEEEEEEEcCC--Cc-eEEEEEEECCCCcEEecC
Confidence 4456778889999998666555545432 22 289999999999987654
No 27
>PF09315 DUF1973: Domain of unknown function (DUF1973); InterPro: IPR015394 These functionally uncharacterised domains are found in various eukaryotic calcium-dependent chloride channels.
Probab=68.77 E-value=55 Score=25.68 Aligned_cols=66 Identities=17% Similarity=0.173 Sum_probs=38.9
Q ss_pred cceeeEE--cCCCcEEEEEEEEeeCCCCCCCCeeEEEEECCCCCeEEe-eeccceeeEEEEe---eccceeeeeeeeCCC
Q 027560 44 TKCVSEE--INSNVVVLADYYVIDEAHPEHPPTVSAKVTSPYGNNLHH-NENVTHGQFAFTT---TEAGNYMACFWLGSN 117 (222)
Q Consensus 44 ~~Cf~e~--v~~~~~i~~~y~v~~~~~~~~~~~i~v~v~~p~g~~v~~-~~~~~~~~f~f~~---~~~G~y~iCf~n~~~ 117 (222)
..+|+.+ +..++.+.+.|.-. . ...+.+.+|+|+.+.. ..+.......+.. .+.|.+++.+.|...
T Consensus 18 ~gtv~ID~tvG~~T~f~v~w~~~-------~-~p~i~L~~P~G~~~~~~~~d~~~~~~~i~ipg~ae~G~W~y~i~~~~~ 89 (179)
T PF09315_consen 18 TGTVYIDSTVGNNTVFTVTWQNS-------S-PPSITLTDPSGTVYTTFTTDSNSKTARIQIPGTAEVGTWTYSITNTSS 89 (179)
T ss_pred EeEEEECCCCCCCeEEEEEECCC-------C-CceEEEECCCCCEEeeeEEcccccEEEEECCCCcccccEEEEEecCCC
Confidence 4455544 33445555555332 1 5677899999998866 2223233333433 468999999976543
No 28
>PRK12813 flgD flagellar basal body rod modification protein; Reviewed
Probab=68.77 E-value=24 Score=28.78 Aligned_cols=56 Identities=11% Similarity=-0.016 Sum_probs=37.5
Q ss_pred CcEEEEEEEEeeCCCCCCCCeeEEEEECCCCCeEEeeeccceeeEEEEee---------ccceeeeeeeeC
Q 027560 54 NVVVLADYYVIDEAHPEHPPTVSAKVTSPYGNNLHHNENVTHGQFAFTTT---------EAGNYMACFWLG 115 (222)
Q Consensus 54 ~~~i~~~y~v~~~~~~~~~~~i~v~v~~p~g~~v~~~~~~~~~~f~f~~~---------~~G~y~iCf~n~ 115 (222)
+..+.+.|.+-++ .. .+.+.|+|.+|++|+..+. +.|.+.|.-. ..|.|+|=+...
T Consensus 110 g~~~~~~~~l~~~----a~-~v~v~I~D~~G~vV~t~~~-~~G~~~f~WDG~d~~G~~l~~G~Yt~~V~A~ 174 (223)
T PRK12813 110 GTPVTISPNPAAD----AD-KAELVVRDAAGAEVARETV-PVGAGPVEWAGEDADGNPLPNGAYSFVVESY 174 (223)
T ss_pred CceeEEEEeccCC----Cc-eEEEEEEcCCCCEEEEEee-CCCceeEEeCCcCCCCCcCCCccEEEEEEEE
Confidence 4567777776432 22 8999999999999977643 3344444332 359999988654
No 29
>PF07210 DUF1416: Protein of unknown function (DUF1416); InterPro: IPR010814 This family consists of several hypothetical bacterial proteins of around 100 residues in length. Members of this family appear to be Actinomycete specific. The function of this family is unknown.
Probab=68.04 E-value=36 Score=23.24 Aligned_cols=60 Identities=13% Similarity=0.192 Sum_probs=38.9
Q ss_pred cCCCcEEEEEEEEeeCCCCCCCCeeEEEEECCCCCeEEeeeccceeeEEEEeeccceeeeeeeeC
Q 027560 51 INSNVVVLADYYVIDEAHPEHPPTVSAKVTSPYGNNLHHNENVTHGQFAFTTTEAGNYMACFWLG 115 (222)
Q Consensus 51 v~~~~~i~~~y~v~~~~~~~~~~~i~v~v~~p~g~~v~~~~~~~~~~f~f~~~~~G~y~iCf~n~ 115 (222)
+.+.+.|.|... .++ .|- ..--+++.|++|+.--+-.-..+|+|.|-+. +|.+++=.-.+
T Consensus 4 ~~ke~VItG~V~-~~G-~Pv--~gAyVRLLD~sgEFtaEvvts~~G~FRFfaa-pG~WtvRal~~ 63 (85)
T PF07210_consen 4 VEKETVITGRVT-RDG-EPV--GGAYVRLLDSSGEFTAEVVTSATGDFRFFAA-PGSWTVRALSR 63 (85)
T ss_pred ccceEEEEEEEe-cCC-cCC--CCeEEEEEcCCCCeEEEEEecCCccEEEEeC-CCceEEEEEcc
Confidence 444566777765 222 221 2667888899999754444455899998774 78777766544
No 30
>PRK15396 murein lipoprotein; Provisional
Probab=67.90 E-value=33 Score=23.10 Aligned_cols=45 Identities=16% Similarity=0.308 Sum_probs=27.3
Q ss_pred ccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHH
Q 027560 145 KDKIEGVELHLKRLEAQVQSIHENLLFLKHREAEMREVSEVTNSR 189 (222)
Q Consensus 145 ~e~l~~l~~~l~~l~~~l~~I~~eq~~~~~re~~~~~~~est~~r 189 (222)
..+++.+..+++.|...+..+..+.+-.+.--..-.+-.+..|.|
T Consensus 24 ~~kvd~LssqV~~L~~kvdql~~dv~~~~~~~~~a~~eA~raN~R 68 (78)
T PRK15396 24 NAKIDQLSSDVQTLNAKVDQLSNDVNAMRSDVQAAKDDAARANQR 68 (78)
T ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 346677888888888888888877766554333333333333443
No 31
>TIGR03503 conserved hypothetical protein TIGR03503. This set of conserved hypothetical protein has a phylogenetic range that closely matches that of TIGR03501, a putative C-terminal protein targeting signal.
Probab=66.64 E-value=93 Score=27.51 Aligned_cols=42 Identities=12% Similarity=0.075 Sum_probs=26.2
Q ss_pred eeEEEEECCCCCeEEeeeccceeeEEEEe---eccceeeeeeeeC
Q 027560 74 TVSAKVTSPYGNNLHHNENVTHGQFAFTT---TEAGNYMACFWLG 115 (222)
Q Consensus 74 ~i~v~v~~p~g~~v~~~~~~~~~~f~f~~---~~~G~y~iCf~n~ 115 (222)
.+.+.+++|+|.........+++.-.+.. .+.|.|++=.+--
T Consensus 243 ~~~~~~~~P~g~~~~~~~~~~~~~~~~~l~~~~~~G~Y~i~~~~~ 287 (374)
T TIGR03503 243 VIHGELVFPNGQIQQFSIELEEPETRVDLPANYEFGKYRVKGTVF 287 (374)
T ss_pred EEEEEEECCCCceEEecccCccCceEEeccCcCCCeEEEEEEEEE
Confidence 77888889999844333333444444433 3579998877553
No 32
>PF05739 SNARE: SNARE domain; InterPro: IPR000727 The process of vesicular fusion with target membranes depends on a set of SNAREs (SNAP-Receptors), which are associated with the fusing membranes [, ]. Target SNAREs (t-SNAREs) are localised on the target membrane and belong to two different families, the syntaxin-like family and the SNAP-25 like family. One member of each family, together with a v-SNARE localised on the vesicular membrane, are required for fusion. The Syntaxins are type-I transmembrane proteins that contain several regions with coiled-coil propensity in their cytosolic part, the SNARE motif. SNAP-25 (IPR000928 from INTERPRO) is a protein consisting of two coiled-coil regions, which is associated with the membrane by lipid anchors. SNARE motifs assemble into parallel four helix bundles stabilised by the burial of these hydrophobic helix faces in the bundle core. Monomeric SNARE motifs are disordered so this assembly reaction is accompanied by a dramatic increase in alpha-helical secondary structure []. The parallel arrangement of SNARE motifs within complexes bring the transmembrane anchors, and the two membranes, into close proximity. Recently, it was shown that the two coiled-coil regions of SNAP-25 and one of the coiled-coil regions of the syntaxins are related []. This domain is found in both Syntaxin and SNAP-25 families as well as in other proteins.; GO: 0005515 protein binding; PDB: 1URQ_B 3RL0_R 1HVV_B 1SFC_B 1N7S_B 3IPD_B 3C98_B 3HD7_F 3RK2_B 1KIL_B ....
Probab=65.82 E-value=30 Score=21.55 Aligned_cols=45 Identities=13% Similarity=0.234 Sum_probs=32.2
Q ss_pred cccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHH
Q 027560 146 DKIEGVELHLKRLEAQVQSIHENLLFLKHREAEMREVSEVTNSRV 190 (222)
Q Consensus 146 e~l~~l~~~l~~l~~~l~~I~~eq~~~~~re~~~~~~~est~~rv 190 (222)
+.++.++..+.+|......|..+..-+...-++....++.+..++
T Consensus 4 ~~l~~l~~~i~~l~~~~~~i~~ev~~Q~~~ld~i~~~vd~~~~~l 48 (63)
T PF05739_consen 4 EELDELEQSIQELKQMFQDIGEEVEEQNEMLDRIEDNVDRANENL 48 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHCHhhHHHHHHHHHHHHHHH
Confidence 457788888888888888888877666666666656666655554
No 33
>PRK12812 flgD flagellar basal body rod modification protein; Reviewed
Probab=65.60 E-value=27 Score=29.21 Aligned_cols=55 Identities=9% Similarity=0.202 Sum_probs=38.0
Q ss_pred cEEEEEEEEeeCCCCCCCCeeEEEEECCCCCeEEeee--ccceeeEEEEeec---------cceeeeeeee
Q 027560 55 VVVLADYYVIDEAHPEHPPTVSAKVTSPYGNNLHHNE--NVTHGQFAFTTTE---------AGNYMACFWL 114 (222)
Q Consensus 55 ~~i~~~y~v~~~~~~~~~~~i~v~v~~p~g~~v~~~~--~~~~~~f~f~~~~---------~G~y~iCf~n 114 (222)
..+.+.|.+-. +.. .+.+.|+|.+|++|++.+ ..+.|.+.|.-.. .|.|+|=+..
T Consensus 128 ~~~~~~~~l~~----~a~-~v~v~I~D~~G~~V~t~~lg~~~aG~~~f~WDG~d~~G~~~~~G~Yt~~v~A 193 (259)
T PRK12812 128 ELIALKLYFPE----DSD-EGTLEIYDSNNKLVEKIDFKEISQGLFTMEWDGRDNDGVYAGDGEYTIKAVY 193 (259)
T ss_pred ceeEEEEecCC----cCc-eEEEEEEeCCCCEEEEEecCCCCCcceeEEECCCCCCCCcCCCeeeEEEEEE
Confidence 45666666632 223 899999999999997754 3345666665532 6999999864
No 34
>PRK09973 putative outer membrane lipoprotein; Provisional
Probab=63.93 E-value=40 Score=23.07 Aligned_cols=45 Identities=13% Similarity=0.320 Sum_probs=30.5
Q ss_pred cccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHH
Q 027560 146 DKIEGVELHLKRLEAQVQSIHENLLFLKHREAEMREVSEVTNSRV 190 (222)
Q Consensus 146 e~l~~l~~~l~~l~~~l~~I~~eq~~~~~re~~~~~~~est~~rv 190 (222)
.+++.+..+++.|+.....+..+.+-.+.--..-.+-.+..|.|+
T Consensus 24 ~kvdqLss~V~~L~~kvdql~~dv~~a~aaa~aAk~EA~RAN~Ri 68 (85)
T PRK09973 24 QKVNQLASNVQTLNAKIARLEQDMKALRPQIYAAKSEANRANTRL 68 (85)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 467788888888888888888777666654444444555555554
No 35
>PF09753 Use1: Membrane fusion protein Use1; InterPro: IPR019150 This entry represents a family of proteins, approximately 300 residues in length, involved in vesicle transport. They have a single C-terminal transmembrane domain and a SNARE [soluble NSF (N-ethylmaleimide-sensitive fusion protein) attachment protein receptor] domain of approximately 60 residues. The SNARE domains are essential for membrane fusion and are conserved from yeasts to humans. Use1 is one of the three protein subunits that make up the SNARE complex and it is specifically required for Golgi-endoplasmic reticulum retrograde transport [].
Probab=62.15 E-value=60 Score=26.76 Aligned_cols=23 Identities=13% Similarity=0.155 Sum_probs=11.0
Q ss_pred HHHhHHHHHHHHHHHHHHHHHHHH
Q 027560 192 WLSILSLGVCIAVSSLQLWYLTRY 215 (222)
Q Consensus 192 ~~sil~i~vli~~~~~Qv~~lk~f 215 (222)
||..+-+++ +++.++-++.+=|+
T Consensus 228 ~~~~~~i~~-v~~~Fi~mvl~iri 250 (251)
T PF09753_consen 228 CWTWLMIFV-VIIVFIMMVLFIRI 250 (251)
T ss_pred HHHHHHHHH-HHHHHHHHHHHhee
Confidence 555553333 44445555554443
No 36
>KOG0518 consensus Actin-binding cytoskeleton protein, filamin [Cytoskeleton]
Probab=61.94 E-value=41 Score=33.47 Aligned_cols=45 Identities=24% Similarity=0.281 Sum_probs=32.6
Q ss_pred eeEEEEECCCCCeEE---eeeccceeeEEEEeeccceeeeeeeeCCCC
Q 027560 74 TVSAKVTSPYGNNLH---HNENVTHGQFAFTTTEAGNYMACFWLGSNP 118 (222)
Q Consensus 74 ~i~v~v~~p~g~~v~---~~~~~~~~~f~f~~~~~G~y~iCf~n~~~~ 118 (222)
++.+.+.||+|...- ..-+...-+..|++.+.|.|.+|+.+...+
T Consensus 884 d~ta~vt~PSG~~~~aei~~~~~~~y~vrFtP~e~G~~tl~V~y~~~~ 931 (1113)
T KOG0518|consen 884 DITARVTDPSGRVFEAEIVDLGQGTYQVRFTPKEPGNHTLSVKYKDQH 931 (1113)
T ss_pred ceEEEeeCCCCCccccEEEECCCceEEEEecCCCCCceEEEEEecCcc
Confidence 899999999997532 222222345688999999999999886543
No 37
>KOG3202 consensus SNARE protein TLG1/Syntaxin 6 [Intracellular trafficking, secretion, and vesicular transport]
Probab=61.16 E-value=70 Score=26.33 Aligned_cols=25 Identities=20% Similarity=0.489 Sum_probs=17.1
Q ss_pred ccccchHHHHHHHHHHHHHHHHHHH
Q 027560 145 KDKIEGVELHLKRLEAQVQSIHENL 169 (222)
Q Consensus 145 ~e~l~~l~~~l~~l~~~l~~I~~eq 169 (222)
.++++.++..+.++......+.+|.
T Consensus 151 De~Ld~ls~ti~rlk~~a~~~g~EL 175 (235)
T KOG3202|consen 151 DEGLDGLSATVQRLKGMALAMGEEL 175 (235)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhHHH
Confidence 3567777777777777766666554
No 38
>PF05984 Cytomega_UL20A: Cytomegalovirus UL20A protein; InterPro: IPR009245 This family consists of several Cytomegalovirus UL20A proteins. UL20A is thought to be a glycoprotein [].
Probab=60.77 E-value=21 Score=24.26 Aligned_cols=13 Identities=15% Similarity=0.194 Sum_probs=8.4
Q ss_pred eeEEEEECCCCCe
Q 027560 74 TVSAKVTSPYGNN 86 (222)
Q Consensus 74 ~i~v~v~~p~g~~ 86 (222)
+.++-|.|.+|..
T Consensus 68 dYDVLItd~dG~~ 80 (100)
T PF05984_consen 68 DYDVLITDGDGSE 80 (100)
T ss_pred cccEEEecCCCCc
Confidence 5667777766643
No 39
>KOG2861 consensus Uncharacterized conserved protein [Function unknown]
Probab=58.62 E-value=24 Score=31.39 Aligned_cols=55 Identities=18% Similarity=0.371 Sum_probs=44.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhHHHHHHHHHHHHHHHH
Q 027560 151 VELHLKRLEAQVQSIHENLLFLKHREAEMREVSEVTNSRVAWLSILSLGVCIAVSSLQLWY 211 (222)
Q Consensus 151 l~~~l~~l~~~l~~I~~eq~~~~~re~~~~~~~est~~rv~~~sil~i~vli~~~~~Qv~~ 211 (222)
+..++.-|+.+++.+.+..+.+++ .++++...++-||-|+-|++-++..++|++.
T Consensus 338 I~qRv~vLN~kl~~i~~~~~~l~e------~ln~r~~~~LEWiIIiLI~~eV~i~i~~i~~ 392 (399)
T KOG2861|consen 338 IGQRVNVLNYKLKVIEDLLDILQE------NLNERHSERLEWIIIILIAFEVAIEIYQIVV 392 (399)
T ss_pred cchHHHHHHHHHHHHHHHHHHHHH------HhhhccccceehhhHHHHHHHHHHHHHHHHH
Confidence 566677788888888888777765 3667778899999999999999999998763
No 40
>PF10779 XhlA: Haemolysin XhlA; InterPro: IPR019715 Haemolysin XhlA is a cell-surface associated haemolysin that lyses the two most prevalent types of insect immune cells (granulocytes and plasmatocytes) as well as rabbit and horse erythrocytes [].
Probab=57.68 E-value=51 Score=21.50 Aligned_cols=19 Identities=16% Similarity=0.422 Sum_probs=7.9
Q ss_pred cchHHHHHHHHHHHHHHHH
Q 027560 148 IEGVELHLKRLEAQVQSIH 166 (222)
Q Consensus 148 l~~l~~~l~~l~~~l~~I~ 166 (222)
+..++..++++.+.++.+.
T Consensus 8 l~~ie~~l~~~~~~i~~lE 26 (71)
T PF10779_consen 8 LNRIETKLDNHEERIDKLE 26 (71)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3344444444444443333
No 41
>COG3630 OadG Na+-transporting methylmalonyl-CoA/oxaloacetate decarboxylase, gamma subunit [Energy production and conversion]
Probab=57.56 E-value=6.2 Score=26.86 Aligned_cols=23 Identities=30% Similarity=0.372 Sum_probs=19.8
Q ss_pred ccceehhhhhhHHHHHHHHHHHh
Q 027560 2 GETLISLDRATVLPLILLLCLAC 24 (222)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~l~~~~ 24 (222)
|-+||-.+++.++++|.+|..+-
T Consensus 10 g~~L~vlGmg~VflfL~iLi~~~ 32 (84)
T COG3630 10 GITLMVLGMGFVFLFLSILIYAM 32 (84)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 45788999999999999998875
No 42
>PF14524 Wzt_C: Wzt C-terminal domain; PDB: 2R5O_B.
Probab=54.97 E-value=58 Score=23.45 Aligned_cols=70 Identities=16% Similarity=0.201 Sum_probs=32.0
Q ss_pred CCcceeeEEcCCCcEEEEEEEEeeCCCCCCCCeeEEEEECCCCCeEEeeeccceeeEEEEeeccceeeeeeeeC
Q 027560 42 SGTKCVSEEINSNVVVLADYYVIDEAHPEHPPTVSAKVTSPYGNNLHHNENVTHGQFAFTTTEAGNYMACFWLG 115 (222)
Q Consensus 42 ~~~~Cf~e~v~~~~~i~~~y~v~~~~~~~~~~~i~v~v~~p~g~~v~~~~~~~~~~f~f~~~~~G~y~iCf~n~ 115 (222)
..+.|=... .|+.+.+.+.+.-...-.. ..+.+.|++.+|..++..... .....+....+|.|++++.-+
T Consensus 24 ~g~~~~~~~--~ge~~~i~i~~~~~~~i~~-~~~~~~i~~~~g~~v~~~~t~-~~~~~~~~~~~g~~~~~~~i~ 93 (142)
T PF14524_consen 24 DGEPTSSFE--SGEPIRIRIDYEVNEDIDD-PVFGFAIRDSDGQRVFGTNTY-DSGFPIPLSEGGTYEVTFTIP 93 (142)
T ss_dssp TEES-SSEE--TTSEEEEEEEEEESS-EEE-EEEEEEEEETT--EEEEEEHH-HHT--EEE-TT-EEEEEEEEE
T ss_pred CCCEeeEEe--CCCEEEEEEEEEECCCCCc-cEEEEEEEcCCCCEEEEECcc-ccCccccccCCCEEEEEEEEc
Confidence 344554433 4555555444432111111 378999999999888764322 122333333366666666443
No 43
>PRK12634 flgD flagellar basal body rod modification protein; Reviewed
Probab=54.92 E-value=30 Score=28.16 Aligned_cols=41 Identities=20% Similarity=0.228 Sum_probs=31.4
Q ss_pred eeEEEEECCCCCeEEeee--ccceeeEEEEeec---------cceeeeeeee
Q 027560 74 TVSAKVTSPYGNNLHHNE--NVTHGQFAFTTTE---------AGNYMACFWL 114 (222)
Q Consensus 74 ~i~v~v~~p~g~~v~~~~--~~~~~~f~f~~~~---------~G~y~iCf~n 114 (222)
.+.+.|+|.+|++|++.+ ..+.|.+.|.-.. .|.|.+-+..
T Consensus 123 ~v~i~I~d~~G~~V~t~~lg~~~aG~~~f~WDG~d~~G~~~~~G~Yt~~v~a 174 (221)
T PRK12634 123 FVNFEITDANGAFVKQISVPASAAGEVSFAWDGTDANGNRMAAGKYGVTATQ 174 (221)
T ss_pred eEEEEEEcCCCCEEEEEecCCcCCCceeEEECCCCCCCCcCCCeeeEEEEEE
Confidence 899999999999998754 3445777776532 5999999954
No 44
>PRK12633 flgD flagellar basal body rod modification protein; Provisional
Probab=53.16 E-value=57 Score=26.70 Aligned_cols=41 Identities=22% Similarity=0.326 Sum_probs=31.2
Q ss_pred eeEEEEECCCCCeEEeee--ccceeeEEEEee---------ccceeeeeeee
Q 027560 74 TVSAKVTSPYGNNLHHNE--NVTHGQFAFTTT---------EAGNYMACFWL 114 (222)
Q Consensus 74 ~i~v~v~~p~g~~v~~~~--~~~~~~f~f~~~---------~~G~y~iCf~n 114 (222)
.+.+.|+|.+|++|++.+ ..+.|.+.|.-. ..|.|+|=+.-
T Consensus 130 ~v~v~I~D~~G~vV~t~~lg~~~aG~~~f~WDG~d~~G~~~~~G~Y~~~V~a 181 (230)
T PRK12633 130 KVTVKVLDPSGAVVRTMELGDLKTGVHTLQWDGNNDGGQPLADGKYSITVSA 181 (230)
T ss_pred EEEEEEEeCCCCEEEEEecCCCCCCceeEEECCCCCCCCcCCCcceEEEEEE
Confidence 899999999999998753 334676777542 35899999864
No 45
>PF10572 UPF0556: Uncharacterised protein family UPF0556; InterPro: IPR018887 This family of proteins has no known function.
Probab=52.39 E-value=1.1e+02 Score=23.58 Aligned_cols=37 Identities=14% Similarity=0.143 Sum_probs=23.2
Q ss_pred ccCeeeeEEEEEcCCCc-ceeeEEcCCCcEEEEEEEEee
Q 027560 28 VVPVTEAIWLQIPSSGT-KCVSEEINSNVVVLADYYVID 65 (222)
Q Consensus 28 ~~~~~~~l~f~i~~~~~-~Cf~e~v~~~~~i~~~y~v~~ 65 (222)
++......-|.++||.. .-|.+.+. .-....+|.+..
T Consensus 19 s~~e~~t~eFdvkP~G~~~t~~~~~~-~~~C~FTYAaqG 56 (158)
T PF10572_consen 19 SVSEPTTKEFDVKPGGVVHTFSESLG-KYKCTFTYAAQG 56 (158)
T ss_pred ccccccceeEEecCCCEEEEeEEecC-ceEEEEEEEecC
Confidence 34445677899999866 44444443 455667777763
No 46
>COG1723 Uncharacterized conserved protein [Function unknown]
Probab=50.74 E-value=23 Score=30.35 Aligned_cols=56 Identities=16% Similarity=0.398 Sum_probs=42.6
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhHHHHHHHHHHHHHHHH
Q 027560 150 GVELHLKRLEAQVQSIHENLLFLKHREAEMREVSEVTNSRVAWLSILSLGVCIAVSSLQLWY 211 (222)
Q Consensus 150 ~l~~~l~~l~~~l~~I~~eq~~~~~re~~~~~~~est~~rv~~~sil~i~vli~~~~~Qv~~ 211 (222)
++..+++-|+.+++-|.+..+.+.+ +++++...++-||-|+-|++-+++++++++.
T Consensus 270 dI~~RvnvLN~Rl~vi~d~l~il~e------~ln~~~s~~lEWivIiLI~~eVllsl~~i~~ 325 (331)
T COG1723 270 DINPRVNVLNRRLEVISDLLDILNE------QLNHSHSTRLEWIVIILIGLEVLLSLYNIIV 325 (331)
T ss_pred chhHHHHHHHHHHHHHHHHHHHHHH------HhhhcccceeEEEehhHHHHHHHHHHHHHHH
Confidence 4566677777777777776555543 4667778899999999999999999977753
No 47
>COG4856 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=49.19 E-value=1.5e+02 Score=26.29 Aligned_cols=38 Identities=16% Similarity=0.210 Sum_probs=25.6
Q ss_pred eeEEEEECCCCCeEEeeeccceeeEEEEe----eccceeeeeeee
Q 027560 74 TVSAKVTSPYGNNLHHNENVTHGQFAFTT----TEAGNYMACFWL 114 (222)
Q Consensus 74 ~i~v~v~~p~g~~v~~~~~~~~~~f~f~~----~~~G~y~iCf~n 114 (222)
.+.+.+.+|++..+......+ |...+ ...|.|+.=+.-
T Consensus 71 tV~Vtl~G~ns~~~~~~~~~d---FkV~ADLt~a~~Gt~evkl~v 112 (403)
T COG4856 71 TVTVTLKGPNSIVLKSEKPED---FKVVADLTHAGVGTHEVKLQV 112 (403)
T ss_pred EEEEEEeCCcceeeeeecCcC---eEEEEEhhhcCCCceEeeeEe
Confidence 999999999988776654322 55555 245777666544
No 48
>PF05377 FlaC_arch: Flagella accessory protein C (FlaC); InterPro: IPR008039 Although archaeal flagella appear superficially similar to those of bacteria, they are quite distinct []. In several archaea, the flagellin genes are followed immediately by the flagellar accessory genes flaCDEFGHIJ. The gene products may have a role in translocation, secretion, or assembly of the flagellum. FlaC is a protein whose exact role is unknown but it has been shown to be membrane-associated (by immuno-blotting fractionated cells) [].
Probab=49.05 E-value=64 Score=20.15 Aligned_cols=28 Identities=18% Similarity=0.347 Sum_probs=17.1
Q ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHH
Q 027560 148 IEGVELHLKRLEAQVQSIHENLLFLKHR 175 (222)
Q Consensus 148 l~~l~~~l~~l~~~l~~I~~eq~~~~~r 175 (222)
++.++..+.++...+..++++.+-++..
T Consensus 2 i~elEn~~~~~~~~i~tvk~en~~i~~~ 29 (55)
T PF05377_consen 2 IDELENELPRIESSINTVKKENEEISES 29 (55)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4556666666666666666665555443
No 49
>PF15417 DUF4624: Domain of unknown function (DUF4624)
Probab=48.86 E-value=1e+02 Score=22.33 Aligned_cols=65 Identities=20% Similarity=0.323 Sum_probs=37.3
Q ss_pred CCcceeeEEcCC-CcEEEEEEEEeeCCCCCCCCeeEEEEECCC-CCeEEeeec---cceeeEEEEe---eccceeeeeee
Q 027560 42 SGTKCVSEEINS-NVVVLADYYVIDEAHPEHPPTVSAKVTSPY-GNNLHHNEN---VTHGQFAFTT---TEAGNYMACFW 113 (222)
Q Consensus 42 ~~~~Cf~e~v~~-~~~i~~~y~v~~~~~~~~~~~i~v~v~~p~-g~~v~~~~~---~~~~~f~f~~---~~~G~y~iCf~ 113 (222)
+...|..+++.. +. -++|+. +|+ .--+.|+|.+ ++++++... .....|+... +..-+|-+||.
T Consensus 37 ~rLFcVs~Die~L~a--Ev~f~m-DGe------~~iVEiKd~~~devLWsn~~~~~V~~dt~tisL~nlqk~kEY~V~ft 107 (132)
T PF15417_consen 37 GRLFCVSEDIEALDA--EVYFQM-DGE------SGIVEIKDRKTDEVLWSNTWNGKVSGDTFTISLNNLQKEKEYVVCFT 107 (132)
T ss_pred ceEEEEecchheeee--EEEEEE-cCc------cceEEeccCCccceeeccccccccccceEEEEhhhcccCceEEEEEe
Confidence 456788887765 33 233444 442 3456777755 445555322 2334566554 45679999997
Q ss_pred eC
Q 027560 114 LG 115 (222)
Q Consensus 114 n~ 115 (222)
..
T Consensus 108 Gt 109 (132)
T PF15417_consen 108 GT 109 (132)
T ss_pred cc
Confidence 54
No 50
>PRK14081 triple tyrosine motif-containing protein; Provisional
Probab=47.47 E-value=1.9e+02 Score=27.69 Aligned_cols=43 Identities=9% Similarity=0.129 Sum_probs=32.9
Q ss_pred eeEEEEECCCCCeEEeeeccceeeEEEEeeccceeeeeeeeCC
Q 027560 74 TVSAKVTSPYGNNLHHNENVTHGQFAFTTTEAGNYMACFWLGS 116 (222)
Q Consensus 74 ~i~v~v~~p~g~~v~~~~~~~~~~f~f~~~~~G~y~iCf~n~~ 116 (222)
-..+.+.+++|.....+.-.+...|++++..+|.|++=.+..+
T Consensus 224 LYKF~~i~~~G~~~~~qdYst~n~~~y~~~~~G~Y~i~~~VKD 266 (667)
T PRK14081 224 LYKFVKIDSDGKQTCIQDYSTKNIVSYKEKKSGDYKLLCLVKD 266 (667)
T ss_pred EEEEEEECCCCCEEEecCccccceEEEEeCCCccEEEEEEEec
Confidence 4555566778877766666678899999999999998665544
No 51
>PF08372 PRT_C: Plant phosphoribosyltransferase C-terminal; InterPro: IPR013583 This domain is found at the C terminus of phosphoribosyltransferases and phosphoribosyltransferase-like proteins. It contains putative transmembrane regions. It often appears together with calcium-ion dependent C2 domains (IPR000008 from INTERPRO).
Probab=46.34 E-value=1.3e+02 Score=23.03 Aligned_cols=47 Identities=9% Similarity=0.140 Sum_probs=35.2
Q ss_pred cccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHH
Q 027560 146 DKIEGVELHLKRLEAQVQSIHENLLFLKHREAEMREVSEVTNSRVAW 192 (222)
Q Consensus 146 e~l~~l~~~l~~l~~~l~~I~~eq~~~~~re~~~~~~~est~~rv~~ 192 (222)
..-+.+..+.+++.+....+++-.......-+|.+.+..=...+..+
T Consensus 52 ~~~~~lr~Rydrlr~va~rvQ~vlgd~At~gERl~allsWrdP~aT~ 98 (156)
T PF08372_consen 52 RPPDSLRMRYDRLRSVAGRVQNVLGDVATQGERLQALLSWRDPRATA 98 (156)
T ss_pred cccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCccHHH
Confidence 34467888888999888888888888888888887777654444444
No 52
>PRK09619 flgD flagellar basal body rod modification protein; Reviewed
Probab=45.31 E-value=98 Score=25.11 Aligned_cols=55 Identities=20% Similarity=0.306 Sum_probs=36.7
Q ss_pred cEEEEEEEEeeCCCCCCCCeeEEEEECCCCCeEEeee--ccceeeEEEEee------ccceeeeeeeeC
Q 027560 55 VVVLADYYVIDEAHPEHPPTVSAKVTSPYGNNLHHNE--NVTHGQFAFTTT------EAGNYMACFWLG 115 (222)
Q Consensus 55 ~~i~~~y~v~~~~~~~~~~~i~v~v~~p~g~~v~~~~--~~~~~~f~f~~~------~~G~y~iCf~n~ 115 (222)
....+.|.+-++ .. .+.+.|+|.+|++ ++.. ..+.|.+.|.-. .+|.|++=+...
T Consensus 110 ~~~~~~~~L~~~----a~-~v~v~I~D~~G~v-~t~~l~~~~aG~~~f~WDG~~~~lp~G~Y~~~V~a~ 172 (218)
T PRK09619 110 DPVAGRLTLKHP----AP-TLTLHITDILGQE-KKIDLGKQPAGPVNFTLDPAALGLQPGQYQLSVVSG 172 (218)
T ss_pred CeeEEEEecCCc----Cc-EEEEEEEeCCCCE-EEEecCCcCCCceeEEECCCCCCCCCceeEEEEEEe
Confidence 455667776422 23 8999999999997 4432 234577777642 369999998754
No 53
>PRK03814 oxaloacetate decarboxylase subunit gamma; Provisional
Probab=45.30 E-value=12 Score=25.68 Aligned_cols=21 Identities=24% Similarity=0.281 Sum_probs=18.2
Q ss_pred ceehhhhhhHHHHHHHHHHHh
Q 027560 4 TLISLDRATVLPLILLLCLAC 24 (222)
Q Consensus 4 ~~~~~~~~~~~~~~~~l~~~~ 24 (222)
++|..|+++++++|.+|.++.
T Consensus 13 ~lm~~GM~~VF~fL~lLi~~~ 33 (85)
T PRK03814 13 TLMLTGMGVVFIFLTLLVYLV 33 (85)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 589999999999998888775
No 54
>PF12690 BsuPI: Intracellular proteinase inhibitor; InterPro: IPR020481 BsuPI is a intracellular proteinase inhibitor that directly regulates the major intracellular proteinase (ISP-1) activity in vivo. It inhibits ISP-1 in the early stages of sporulation and then may be inactivated by a membrane-bound proteinase [].; PDB: 3ISY_A.
Probab=44.96 E-value=94 Score=20.90 Aligned_cols=18 Identities=11% Similarity=0.047 Sum_probs=12.6
Q ss_pred eeEEEEECCCCCeEEeee
Q 027560 74 TVSAKVTSPYGNNLHHNE 91 (222)
Q Consensus 74 ~i~v~v~~p~g~~v~~~~ 91 (222)
..++.|+|++|+.++.+.
T Consensus 25 ~~D~~v~d~~g~~vwrwS 42 (82)
T PF12690_consen 25 RYDFVVKDKEGKEVWRWS 42 (82)
T ss_dssp -EEEEEE-TT--EEEETT
T ss_pred EEEEEEECCCCCEEEEec
Confidence 899999999999999875
No 55
>PF07835 COX4_pro_2: Bacterial aa3 type cytochrome c oxidase subunit IV; InterPro: IPR012422 Bacterial cytochrome c oxidase is found bound to the to the cell membrane, where it is involved in the generation of the transmembrane proton electrochemical gradient. It is composed of four subunits. Subunit IV consists of one transmembrane helix that does not interact directly with the other subunits, but maintains its position by indirect contacts via phospholipid molecules found in the structure. The function of subunit IV is as yet unknown []. ; PDB: 1QLE_D 1M57_J 1M56_J.
Probab=44.79 E-value=66 Score=19.04 Aligned_cols=27 Identities=11% Similarity=0.116 Sum_probs=15.4
Q ss_pred HHHHHHhHHHHHHHhHHHHHHHHHHHH
Q 027560 181 EVSEVTNSRVAWLSILSLGVCIAVSSL 207 (222)
Q Consensus 181 ~~~est~~rv~~~sil~i~vli~~~~~ 207 (222)
++-+.--+-..|.+++-+++++.++++
T Consensus 16 ~Ty~gFi~~~k~~~~~~~~~li~lai~ 42 (44)
T PF07835_consen 16 KTYDGFIKLTKWGTIAIAAILIFLAIF 42 (44)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333445566666666777766653
No 56
>PF10805 DUF2730: Protein of unknown function (DUF2730); InterPro: IPR020269 This entry represents a family of various hypothetical proteins. The proteins, which include HI1498 and Gp25, from phage Mu, are currently uncharacterised.
Probab=43.91 E-value=70 Score=22.69 Aligned_cols=38 Identities=21% Similarity=0.329 Sum_probs=17.5
Q ss_pred HHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHhHH
Q 027560 152 ELHLKRLEAQVQSI--HENLLFLKHREAEMREVSEVTNSR 189 (222)
Q Consensus 152 ~~~l~~l~~~l~~I--~~eq~~~~~re~~~~~~~est~~r 189 (222)
+.+++.++..++++ +++.+-++.+-.+.+.....++.+
T Consensus 48 ~~Rl~~lE~~l~~LPt~~dv~~L~l~l~el~G~~~~l~~~ 87 (106)
T PF10805_consen 48 DRRLQALETKLEHLPTRDDVHDLQLELAELRGELKELSAR 87 (106)
T ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHhHHHHHHHH
Confidence 55555555555544 444444444444444444444433
No 57
>PRK13165 cytochrome c-type biogenesis protein CcmE; Reviewed
Probab=43.78 E-value=79 Score=24.40 Aligned_cols=77 Identities=14% Similarity=0.044 Sum_probs=35.6
Q ss_pred hhhhHHHHHHHHHHH--hhhcccCeeeeEEEEEcCCCcceeeE----EcCCCcEEEEEEEEeeCCC---CCCCCeeEEEE
Q 027560 9 DRATVLPLILLLCLA--CYICVVPVTEAIWLQIPSSGTKCVSE----EINSNVVVLADYYVIDEAH---PEHPPTVSAKV 79 (222)
Q Consensus 9 ~~~~~~~~~~~l~~~--~~~~~~~~~~~l~f~i~~~~~~Cf~e----~v~~~~~i~~~y~v~~~~~---~~~~~~i~v~v 79 (222)
+|++.++++++++++ .++.+....+.+.+...|++-.=-.. ..+.+..+++.=.|..+.. ++.. .+.|.|
T Consensus 6 ~rRl~~~~~~~~~~~~a~~L~l~al~~n~~yF~tPsev~~~~~~~~~~~~~g~~iRvgG~V~~GSi~r~~~~l-~v~F~v 84 (160)
T PRK13165 6 KKRLWLACAVLAGLALTIGLVLYALRSNIDLFYTPGEILYGKRETQQKPEVGQRLRVGGMVMPGSVQRDPNSL-KVSFTL 84 (160)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHhhCccEEeCHHHHhccccccccccCCCCEEEEeeEEeCCcEEECCCCe-EEEEEE
Confidence 444444444444443 33333344555555555554321110 1234555554444443211 1222 688888
Q ss_pred ECCCCCe
Q 027560 80 TSPYGNN 86 (222)
Q Consensus 80 ~~p~g~~ 86 (222)
+|....+
T Consensus 85 tD~~~~v 91 (160)
T PRK13165 85 YDAGGSV 91 (160)
T ss_pred EcCCeEE
Confidence 8875554
No 58
>PF14155 DUF4307: Domain of unknown function (DUF4307)
Probab=43.38 E-value=1.2e+02 Score=21.71 Aligned_cols=41 Identities=12% Similarity=0.179 Sum_probs=27.6
Q ss_pred eEEcCCCcEEEEEEEEeeCCCCCCCCeeEEEEECCCCCeEEee
Q 027560 48 SEEINSNVVVLADYYVIDEAHPEHPPTVSAKVTSPYGNNLHHN 90 (222)
Q Consensus 48 ~e~v~~~~~i~~~y~v~~~~~~~~~~~i~v~v~~p~g~~v~~~ 90 (222)
..++..++.+.+.|++..+. +...-+.+...|.++.++-+.
T Consensus 40 gf~vv~d~~v~v~f~Vtr~~--~~~a~C~VrA~~~d~aeVGrr 80 (112)
T PF14155_consen 40 GFEVVDDSTVEVTFDVTRDP--GRPAVCIVRALDYDGAEVGRR 80 (112)
T ss_pred EEEECCCCEEEEEEEEEECC--CCCEEEEEEEEeCCCCEEEEE
Confidence 44555778888889988542 211378888888888776554
No 59
>COG4932 Predicted outer membrane protein [Cell envelope biogenesis, outer membrane]
Probab=41.81 E-value=2e+02 Score=29.81 Aligned_cols=102 Identities=10% Similarity=0.050 Sum_probs=61.0
Q ss_pred eeeEEEEEcCCCcceeeEEcCCCcEEEEEEEEeeC--CCCCCCCeeEEEEECCCCCeEEeeecc-ceeeEEEEeecccee
Q 027560 32 TEAIWLQIPSSGTKCVSEEINSNVVVLADYYVIDE--AHPEHPPTVSAKVTSPYGNNLHHNENV-THGQFAFTTTEAGNY 108 (222)
Q Consensus 32 ~~~l~f~i~~~~~~Cf~e~v~~~~~i~~~y~v~~~--~~~~~~~~i~v~v~~p~g~~v~~~~~~-~~~~f~f~~~~~G~y 108 (222)
+..+.|.|+..+++-..... .++.+.++.....- ..+....+..|.+.|..|+++.+.-.. ..|+....--.+|.|
T Consensus 1316 a~pv~ftI~~~q~e~~kV~~-~n~~~~gsv~l~k~d~~~~~~LegA~F~l~de~g~ilke~l~t~~nG~l~v~dLaPGdY 1394 (1531)
T COG4932 1316 ATPVNFTIEFNQEEAVKVTK-ENDAKTGSVVLTKLDSSSGVTLEGAEFELLDEEGNILKEGLVTDENGQLLVDDLAPGDY 1394 (1531)
T ss_pred ecceeEEEEecccccEEEEE-eeccccccEEEEEeecccCccccCcEEEEEcccCceehhcceeCCCCcEEEeecCCCce
Confidence 34556777766665554432 25555555555432 222223588999999999998765322 257888888889999
Q ss_pred eeeeeeCCCCCCcccEEEEEEEEecc
Q 027560 109 MACFWLGSNPQKVADATLGLDWRIGF 134 (222)
Q Consensus 109 ~iCf~n~~~~~~~~~~~v~f~i~~g~ 134 (222)
+|-=.--.+.+......|+|.|+.+.
T Consensus 1395 qfvETkAPtgY~Ld~tpv~FTIe~~q 1420 (1531)
T COG4932 1395 QFVETKAPTGYELDATPVDFTIEFNQ 1420 (1531)
T ss_pred eeEEccCCcceeccCCceEEEEEcCc
Confidence 98764322222223345666666543
No 60
>PF06156 DUF972: Protein of unknown function (DUF972); InterPro: IPR010377 FUNCTION: Involved in initiation control of chromosome replication. SUBUNIT: Interacts with both DnaA and DnaN, acting as a bridge between these two proteins. SIMILARITY: Belongs to the YabA family.
Probab=41.73 E-value=1.2e+02 Score=21.61 Aligned_cols=26 Identities=19% Similarity=0.337 Sum_probs=13.2
Q ss_pred cchHHHHHHHHHHHHHHHHHHHHHHH
Q 027560 148 IEGVELHLKRLEAQVQSIHENLLFLK 173 (222)
Q Consensus 148 l~~l~~~l~~l~~~l~~I~~eq~~~~ 173 (222)
++.++.++..+...+..++.....+-
T Consensus 10 l~~le~~l~~l~~~~~~LK~~~~~l~ 35 (107)
T PF06156_consen 10 LDQLEQQLGQLLEELEELKKQLQELL 35 (107)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44555555555555555555444333
No 61
>COG2372 CopC Uncharacterized protein, homolog of Cu resistance protein CopC [General function prediction only]
Probab=41.42 E-value=1.4e+02 Score=22.02 Aligned_cols=43 Identities=23% Similarity=0.278 Sum_probs=26.3
Q ss_pred eeEEEEECCCCCeEEeeecc-cee---eEEEEe---eccceeeeeeeeCC
Q 027560 74 TVSAKVTSPYGNNLHHNENV-THG---QFAFTT---TEAGNYMACFWLGS 116 (222)
Q Consensus 74 ~i~v~v~~p~g~~v~~~~~~-~~~---~f~f~~---~~~G~y~iCf~n~~ 116 (222)
.-.+.+++|+|..+...... .++ ...... -+.|.|.+=+..-+
T Consensus 61 fs~~~l~~~d~~~v~t~~~~~~~~~~~~l~v~l~~~L~aG~Y~v~WrvvS 110 (127)
T COG2372 61 FSGAKLTGPDGEEVATAGTKLDEQNHTQLEVPLPQPLKAGVYTVDWRVVS 110 (127)
T ss_pred cceeEEECCCCCccccCcccccccCCcEEEecCcccCCCCcEEEEEEEEe
Confidence 57788999999887553211 122 133333 24699998886543
No 62
>PF14990 DUF4516: Domain of unknown function (DUF4516)
Probab=40.58 E-value=19 Score=21.73 Aligned_cols=26 Identities=19% Similarity=0.028 Sum_probs=21.5
Q ss_pred ehhhhhhHHHHHHHHHHHhhhcccCe
Q 027560 6 ISLDRATVLPLILLLCLACYICVVPV 31 (222)
Q Consensus 6 ~~~~~~~~~~~~~~l~~~~~~~~~~~ 31 (222)
.+.++.+..++..++|+++++|++..
T Consensus 5 v~~~~yl~~~~~s~~sM~aGA~vVH~ 30 (47)
T PF14990_consen 5 VSWPSYLKSLVASLLSMLAGASVVHN 30 (47)
T ss_pred CcHHHHHHHHHHHHHHHHhhhHHHHH
Confidence 35677888999999999999888764
No 63
>PRK13150 cytochrome c-type biogenesis protein CcmE; Reviewed
Probab=40.01 E-value=99 Score=23.84 Aligned_cols=36 Identities=11% Similarity=0.047 Sum_probs=19.4
Q ss_pred CCcEEEEEEEEeeCCC---CCCCCeeEEEEECCCCCeEEe
Q 027560 53 SNVVVLADYYVIDEAH---PEHPPTVSAKVTSPYGNNLHH 89 (222)
Q Consensus 53 ~~~~i~~~y~v~~~~~---~~~~~~i~v~v~~p~g~~v~~ 89 (222)
.|..+++.=.|..+.. ++.. .+.|.|+|..+.+-..
T Consensus 56 ~g~~iRvgG~V~~GSv~r~~~~~-~v~F~vtD~~~~v~V~ 94 (159)
T PRK13150 56 VGQRLRVGGMVMPGSVRRDPDSL-KVNFSLYDAEGSVTVS 94 (159)
T ss_pred CCCEEEEeeEEeCCcEEECCCCc-EEEEEEEcCCcEEEEE
Confidence 3555554444443211 1223 7899999887655333
No 64
>PF10731 Anophelin: Thrombin inhibitor from mosquito; InterPro: IPR018932 Members of this family are all inhibitors of thrombin, the peptidase that is at the end of the blood coagulation cascade and which creates the clot by cleaving fibrinogen. The interaction between thrombin and fibrinogen involves two different areas of contact - via the thrombin active site and via a second substrate-binding site known as an exosite. The inhibitor acts by blocking the exosite, rather than by interacting with the active site. The inhibitors are from mosquitoes that feed on human blood and which, by inhibiting thrombin, prevent the blood from clotting and keep it flowing.
Probab=39.97 E-value=18 Score=22.92 Aligned_cols=15 Identities=40% Similarity=0.580 Sum_probs=11.1
Q ss_pred hHHHHHHHHHHHhhh
Q 027560 12 TVLPLILLLCLACYI 26 (222)
Q Consensus 12 ~~~~~~~~l~~~~~~ 26 (222)
-=|.|+.+||+++.+
T Consensus 3 ~Kl~vialLC~aLva 17 (65)
T PF10731_consen 3 SKLIVIALLCVALVA 17 (65)
T ss_pred chhhHHHHHHHHHHH
Confidence 346788899998854
No 65
>COG3017 LolB Outer membrane lipoprotein involved in outer membrane biogenesis [Cell envelope biogenesis, outer membrane]
Probab=39.82 E-value=2e+02 Score=23.17 Aligned_cols=18 Identities=22% Similarity=0.388 Sum_probs=9.4
Q ss_pred hhhHHHHHHHHHHHhhhc
Q 027560 10 RATVLPLILLLCLACYIC 27 (222)
Q Consensus 10 ~~~~~~~~~~l~~~~~~~ 27 (222)
++..+.++++.|+++.+|
T Consensus 5 ~~~~~~l~~~As~LL~aC 22 (206)
T COG3017 5 KRLLFLLLALASLLLTAC 22 (206)
T ss_pred HHHHHHHHHHHHHHHHhc
Confidence 334444555555555555
No 66
>COG4467 Regulator of replication initiation timing [Replication, recombination, and repair]
Probab=39.70 E-value=1.3e+02 Score=21.62 Aligned_cols=43 Identities=21% Similarity=0.281 Sum_probs=28.9
Q ss_pred ccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHH
Q 027560 147 KIEGVELHLKRLEAQVQSIHENLLFLKHREAEMREVSEVTNSR 189 (222)
Q Consensus 147 ~l~~l~~~l~~l~~~l~~I~~eq~~~~~re~~~~~~~est~~r 189 (222)
.++.++.++..+...+..|+....++.+--...+--++....|
T Consensus 9 ~v~~le~~l~~l~~el~~lK~~l~~lvEEN~~L~lENe~LR~R 51 (114)
T COG4467 9 QVDNLEEQLGVLLAELGGLKQHLGSLVEENTALRLENEKLRER 51 (114)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHhhHHHHHHH
Confidence 4667888888888888888877766665555555445444444
No 67
>PRK13159 cytochrome c-type biogenesis protein CcmE; Reviewed
Probab=39.65 E-value=93 Score=23.89 Aligned_cols=76 Identities=11% Similarity=0.026 Sum_probs=34.2
Q ss_pred hhhhhHHHHHHHHHHHhhhccc--CeeeeEEEEEcCCCcceeeEEcCCCcEEEEEEEEeeCC---CCCCCCeeEEEEECC
Q 027560 8 LDRATVLPLILLLCLACYICVV--PVTEAIWLQIPSSGTKCVSEEINSNVVVLADYYVIDEA---HPEHPPTVSAKVTSP 82 (222)
Q Consensus 8 ~~~~~~~~~~~~l~~~~~~~~~--~~~~~l~f~i~~~~~~Cf~e~v~~~~~i~~~y~v~~~~---~~~~~~~i~v~v~~p 82 (222)
++|++.+.++++++++++..+. ...+.+.+...|.+-. ....+.+..+++.=.|..+. .++.. .+.|.|+|.
T Consensus 5 r~rRl~~v~~~~~~~~~a~~Lv~~al~~n~~yF~tpsEv~--~~~~~~~~~~RlGG~V~~GSv~r~~~~~-~v~F~vtD~ 81 (155)
T PRK13159 5 RKQRLWLVIGVLTAAALAVTLIVLALQRNMSYLFTPSQVR--AGAAAGYQQFRLGGMVKAGSIQRAADSL-KVSFTVIDK 81 (155)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHhhhCceEEECHHHHh--cCCcccCCeEEEccEEecCcEEEcCCCc-EEEEEEEcC
Confidence 3445544444444444433333 3445555555554421 11223344444333332221 12233 788888887
Q ss_pred CCCe
Q 027560 83 YGNN 86 (222)
Q Consensus 83 ~g~~ 86 (222)
...+
T Consensus 82 ~~~v 85 (155)
T PRK13159 82 NAAT 85 (155)
T ss_pred CcEE
Confidence 5554
No 68
>PF12669 P12: Virus attachment protein p12 family
Probab=39.21 E-value=35 Score=21.48 Aligned_cols=9 Identities=22% Similarity=0.733 Sum_probs=6.5
Q ss_pred HHHHhhhcc
Q 027560 212 LTRYFQKKK 220 (222)
Q Consensus 212 lk~fF~~Kk 220 (222)
++++++++|
T Consensus 17 ~r~~~k~~K 25 (58)
T PF12669_consen 17 IRKFIKDKK 25 (58)
T ss_pred HHHHHHHhh
Confidence 488887765
No 69
>PF00517 GP41: Retroviral envelope protein; InterPro: IPR000328 This entry represents envelope proteins from a variety of retroviruses. It includes the GP41 subunit of the envelope protein complex from Human immunodeficiency virus (HIV) and Simian-Human immunodeficiency virus (SIV), which mediate membrane fusion during viral entry []. It has a core composed of a six-helix bundle and is folded by its trimeric N- and C-terminal heptad-repeats (NHR and CHR) []. Derivatives of this protein prevent HIV-1 from entering cell lines and primary human CD4+ cells in vitro [], making it an attractive subject of gene therapy studies against HIV and related retroviruses. The entry also represents envelop proteins from Bovine immunodeficiency virus, Feline immunodeficiency virus and Equine infectious anemia virus (EIAV) [, ], as well as the Gp36 protein from Mouse mammary tumor virus (MMTV) and Human endogenous retrovirus (HERV).; GO: 0005198 structural molecule activity, 0019031 viral envelope; PDB: 2EZO_B 2EZQ_B 2EZR_A 2JNR_B 1F23_D 2EZP_A 1JEK_A 2Q7C_A 2Q5U_A 2Q3I_A ....
Probab=39.05 E-value=1.3e+02 Score=23.97 Aligned_cols=59 Identities=8% Similarity=0.105 Sum_probs=24.9
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------HhHHHHHHHhHHHHHHHHHHHH
Q 027560 149 EGVELHLKRLEAQVQSIHENLLFLKHREAEMREVSEV------TNSRVAWLSILSLGVCIAVSSL 207 (222)
Q Consensus 149 ~~l~~~l~~l~~~l~~I~~eq~~~~~re~~~~~~~es------t~~rv~~~sil~i~vli~~~~~ 207 (222)
..-+++++...+.+..+..+-.-.+++........++ -.....|+..+.++++|+++++
T Consensus 104 ~~W~~~i~~~~~~i~~ll~~a~~qqe~n~~~l~~Ld~w~~l~~wfdit~W~~~Iki~i~iv~~iI 168 (204)
T PF00517_consen 104 QQWEKEISNYTGNIYNLLEEAQNQQEKNEQDLLKLDSWTNLWSWFDITKWLWYIKIFIMIVIGII 168 (204)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTHHHHHHHCHHHHHHHHHH---------
T ss_pred HHHHHHhcccHHHHHHHHHHHHhchhhhhhhhcCCcHHhhhhhHHhHHHHHHHHHHHHHHHHHHH
Confidence 3455666666666655555544444444443343333 2333445556666666555444
No 70
>KOG2678 consensus Predicted membrane protein [Function unknown]
Probab=38.59 E-value=2.2e+02 Score=23.30 Aligned_cols=31 Identities=10% Similarity=0.319 Sum_probs=22.8
Q ss_pred HHHHHHhHHHHHHHHHHHHHHHHHHHHhhhc
Q 027560 189 RVAWLSILSLGVCIAVSSLQLWYLTRYFQKK 219 (222)
Q Consensus 189 rv~~~sil~i~vli~~~~~Qv~~lk~fF~~K 219 (222)
+..+|--+-++++++++++-.+++=++|++-
T Consensus 213 k~s~wf~~~miI~v~~sFVsMiliiqifkkl 243 (244)
T KOG2678|consen 213 KLSYWFYITMIIFVILSFVSMILIIQIFKKL 243 (244)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Confidence 3356666667777888888888888888753
No 71
>PF04678 DUF607: Protein of unknown function, DUF607; InterPro: IPR006769 This entry represents the C-terminal domain of coiled-coil domain containing protein 109.
Probab=38.09 E-value=1.9e+02 Score=22.50 Aligned_cols=44 Identities=18% Similarity=0.363 Sum_probs=31.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHh
Q 027560 152 ELHLKRLEAQVQSIHENLLFLKHREAEMREVSEVTNSRVAWLSI 195 (222)
Q Consensus 152 ~~~l~~l~~~l~~I~~eq~~~~~re~~~~~~~est~~rv~~~si 195 (222)
..+...+...+..+..+..-+.....+-...++...++++|.++
T Consensus 56 ~~~~~~l~~~l~~~~~el~~le~~k~~id~~A~~~~~~~~w~gl 99 (180)
T PF04678_consen 56 NSRERQLRKRLEELRQELAPLEKIKQEIDEKAEKRARRLLWGGL 99 (180)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34556677778888888877777777777777777777776543
No 72
>COG5415 Predicted integral membrane metal-binding protein [General function prediction only]
Probab=36.98 E-value=2.3e+02 Score=23.01 Aligned_cols=31 Identities=13% Similarity=0.219 Sum_probs=19.5
Q ss_pred cccchHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 027560 146 DKIEGVELHLKRLEAQVQSIHENLLFLKHRE 176 (222)
Q Consensus 146 e~l~~l~~~l~~l~~~l~~I~~eq~~~~~re 176 (222)
++++.++.++.+++-.+..++...+-.+.|-
T Consensus 15 ~~L~rle~qi~q~~~~~~~~qs~l~~~~~r~ 45 (251)
T COG5415 15 ADLSRLESQIHQLDVALKKSQSILSQWQSRL 45 (251)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3566777777777777766666555454443
No 73
>PRK13169 DNA replication intiation control protein YabA; Reviewed
Probab=36.84 E-value=1.6e+02 Score=21.19 Aligned_cols=23 Identities=17% Similarity=0.349 Sum_probs=11.2
Q ss_pred cchHHHHHHHHHHHHHHHHHHHH
Q 027560 148 IEGVELHLKRLEAQVQSIHENLL 170 (222)
Q Consensus 148 l~~l~~~l~~l~~~l~~I~~eq~ 170 (222)
+..++.++..+...+..++....
T Consensus 10 l~~le~~l~~l~~el~~LK~~~~ 32 (110)
T PRK13169 10 LDDLEQNLGVLLKELGALKKQLA 32 (110)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455555555555555544443
No 74
>PF01519 DUF16: Protein of unknown function DUF16; InterPro: IPR002862 Proteins that contain this domain are of unknown function. It appears to be confined to proteins from Mycoplasma pneumoniae [].; PDB: 2BA2_C.
Probab=35.72 E-value=1.6e+02 Score=20.88 Aligned_cols=44 Identities=9% Similarity=0.106 Sum_probs=23.7
Q ss_pred ccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHH
Q 027560 147 KIEGVELHLKRLEAQVQSIHENLLFLKHREAEMREVSEVTNSRV 190 (222)
Q Consensus 147 ~l~~l~~~l~~l~~~l~~I~~eq~~~~~re~~~~~~~est~~rv 190 (222)
+++.+...++..-+.++++..+++-.-.+-+..-+++.+++.|+
T Consensus 54 qI~kL~e~V~~QGEqIkel~~e~k~qgktL~~I~~~L~~inkRL 97 (102)
T PF01519_consen 54 QINKLTEKVDKQGEQIKELQVEQKAQGKTLQLILKTLQSINKRL 97 (102)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444445555566666666644444444555556666654
No 75
>COG3915 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=35.60 E-value=62 Score=24.29 Aligned_cols=35 Identities=17% Similarity=0.236 Sum_probs=20.6
Q ss_pred hhhHHHHHHHHHHHhhhcccCeeeeEEEEEcCCCcceee
Q 027560 10 RATVLPLILLLCLACYICVVPVTEAIWLQIPSSGTKCVS 48 (222)
Q Consensus 10 ~~~~~~~~~~l~~~~~~~~~~~~~~l~f~i~~~~~~Cf~ 48 (222)
|...+.+|.++|+.|+ ..+.-+++.+.+|..+-|.
T Consensus 5 r~ll~~fL~l~~~sla----qa~~ilTiq~ad~~~~~ft 39 (155)
T COG3915 5 RVLLLTFLALISSSLA----QAEPILTIQIADGPTVSFT 39 (155)
T ss_pred HHHHHHHHHHHhhHHh----hcCceEEEEecCCCceeec
Confidence 4444466666666663 2223467777777777665
No 76
>PF04277 OAD_gamma: Oxaloacetate decarboxylase, gamma chain ; InterPro: IPR005899 This family comprises distantly related, low complexity, hydrophobic small subunits of several related sodium ion-pumping decarboxylases. These include oxaloacetate decarboxylase gamma subunit and methylmalonyl-CoA decarboxylase delta subunit [].; GO: 0008948 oxaloacetate decarboxylase activity, 0015081 sodium ion transmembrane transporter activity, 0071436 sodium ion export, 0016020 membrane
Probab=35.34 E-value=25 Score=23.29 Aligned_cols=22 Identities=18% Similarity=0.351 Sum_probs=18.6
Q ss_pred ceehhhhhhHHHHHHHHHHHhh
Q 027560 4 TLISLDRATVLPLILLLCLACY 25 (222)
Q Consensus 4 ~~~~~~~~~~~~~~~~l~~~~~ 25 (222)
.++..++++++.+|.+|.++..
T Consensus 6 ~i~i~Gm~iVF~~L~lL~~~i~ 27 (79)
T PF04277_consen 6 QIMIIGMGIVFLVLILLILVIS 27 (79)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 4678899999999999998873
No 77
>PF08842 Mfa2: Fimbrillin-A associated anchor proteins Mfa1 and Mfa2; InterPro: IPR014941 This family of proteins may be lipoproteins principally from bacilli. They are between 300 and 400 residues. Many Bacteroides-like bacterial species, including Porphyromonas gingivalis, the causal agent of periodontal infection, carry at least two types of fimbriae, namely FimA and Mfa1 fimbriae, following the names of their major subunit proteins []. Normally, FimA fimbriae are long filaments that are easily detached from cells, whereas Mfa1 fimbriae are short filaments that are tightly bound to cells; however, in the absence of Mfa2 protein, the Mfa1 fimbriae are also very long and are not attached. Mfa2 and Mfa1 are associated with each other in whole P. gingivalis cells to the extent that Mfa2 is located on the cell surface and probably associated with Mfa1 fimbriae in such a way that it anchors the Mfa1 fimbriae to the cell surface and regulates Mfa1 filament length [].; PDB: 3PAY_C 3GF8_A.
Probab=34.85 E-value=45 Score=27.30 Aligned_cols=43 Identities=16% Similarity=0.254 Sum_probs=26.7
Q ss_pred CeeEEEEECCCCCeEEeeeccc---e-eeEEE--EeeccceeeeeeeeC
Q 027560 73 PTVSAKVTSPYGNNLHHNENVT---H-GQFAF--TTTEAGNYMACFWLG 115 (222)
Q Consensus 73 ~~i~v~v~~p~g~~v~~~~~~~---~-~~f~f--~~~~~G~y~iCf~n~ 115 (222)
..+++.|+|.+|+.+....... . +.|.. .....|.|+++.+..
T Consensus 29 ~~v~lyvFd~~g~~v~~~~~~~~~~~~~~y~~~~~~l~~G~Y~~va~~n 77 (283)
T PF08842_consen 29 KRVDLYVFDEDGKLVKQRTIDSEELEGGGYTMFLLDLPPGTYTFVAWGN 77 (283)
T ss_dssp -EEEEEEE-TTSBEEEEEEEECGGCCTTTEEE-CCT--SEEEEEEEEES
T ss_pred eEEEEEEEeCCCeEEEEEEcccccccCCceEEeeccCCCCcEEEEEEEC
Confidence 3999999999999665543221 2 44554 224579999888764
No 78
>PF07888 CALCOCO1: Calcium binding and coiled-coil domain (CALCOCO1) like; InterPro: IPR012852 Proteins found in this family are similar to the coiled-coil transcriptional coactivator protein expressed by Mus musculus (CoCoA, Q8CGU1 from SWISSPROT). This protein binds to a highly conserved N-terminal domain of p160 coactivators, such as GRIP1 (Q61026 from SWISSPROT), and thus enhances transcriptional activation by a number of nuclear receptors. CoCoA has a central coiled-coil region with three leucine zipper motifs, which is required for its interaction with GRIP1 and may regulate the autonomous transcriptional activation activity of the C-terminal region [].
Probab=34.30 E-value=3.9e+02 Score=24.96 Aligned_cols=76 Identities=12% Similarity=0.046 Sum_probs=40.9
Q ss_pred EEEEcCCCcceeeEEcCC----CcEEEEEEEEeeCCCCCCCCeeEEEEECCCCCeEEeeeccceeeEEEEe---ec--cc
Q 027560 36 WLQIPSSGTKCVSEEINS----NVVVLADYYVIDEAHPEHPPTVSAKVTSPYGNNLHHNENVTHGQFAFTT---TE--AG 106 (222)
Q Consensus 36 ~f~i~~~~~~Cf~e~v~~----~~~i~~~y~v~~~~~~~~~~~i~v~v~~p~g~~v~~~~~~~~~~f~f~~---~~--~G 106 (222)
.+++|++...|-|--.+. .-.-.|-|.|..... ..+ ---+.+..|+|..- .........|.+ |+ ..
T Consensus 14 ~~Y~P~~~v~C~Ytlt~~~~ps~~DWIGiFKVGw~s~-rdY-~Tf~Wa~~p~~~~~---~s~~~~~V~F~ayyLPk~~~e 88 (546)
T PF07888_consen 14 KSYIPGTDVECHYTLTPGFHPSSKDWIGIFKVGWSST-RDY-YTFVWAPVPENYVE---GSAVNCQVQFQAYYLPKDDDE 88 (546)
T ss_pred cccCCCCCeEEEEecCCCCCCCCCCeeEEeecCCCch-hhe-eeEEeeccCccccC---CCccceEEEECcccCCCCCCC
Confidence 468888888888865432 345667777754321 122 33445556654211 111122334433 33 45
Q ss_pred eeeeeeeeCC
Q 027560 107 NYMACFWLGS 116 (222)
Q Consensus 107 ~y~iCf~n~~ 116 (222)
.|.||..+..
T Consensus 89 ~YqfcYv~~~ 98 (546)
T PF07888_consen 89 FYQFCYVDQK 98 (546)
T ss_pred eEEEEEECCC
Confidence 7999997654
No 79
>PF09323 DUF1980: Domain of unknown function (DUF1980); InterPro: IPR015402 Members of this occur in gene pairs with members of PF03773 from PFAM. The N-terminal region contains several predicted transmembrane helix regions while the few invariant residues (G, CxxD, and W) occur in the C-terminal region. Members of this family are found in a set of prokaryotic hypothetical proteins. Their exact function has not, as yet, been defined.
Probab=34.12 E-value=56 Score=25.51 Aligned_cols=34 Identities=18% Similarity=0.200 Sum_probs=28.8
Q ss_pred HHhHHHHHHHhHHHHHHHHHHHHHHHHHHHHhhh
Q 027560 185 VTNSRVAWLSILSLGVCIAVSSLQLWYLTRYFQK 218 (222)
Q Consensus 185 st~~rv~~~sil~i~vli~~~~~Qv~~lk~fF~~ 218 (222)
=.+-|..++..+-++++++++++|++.+-+--++
T Consensus 26 YI~P~~~~~~~~a~i~l~ilai~q~~~~~~~~~~ 59 (182)
T PF09323_consen 26 YIHPRYIPLLYFAAILLLILAIVQLWRWFRPKRR 59 (182)
T ss_pred HhCccHHHHHHHHHHHHHHHHHHHHHHHHhcccc
Confidence 4577899999999999999999999987665554
No 80
>PF14584 DUF4446: Protein of unknown function (DUF4446)
Probab=33.86 E-value=1.5e+02 Score=22.64 Aligned_cols=50 Identities=20% Similarity=0.238 Sum_probs=31.8
Q ss_pred hhhhhhccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhH
Q 027560 139 WESVAKKDKIEGVELHLKRLEAQVQSIHENLLFLKHREAEMREVSEVTNS 188 (222)
Q Consensus 139 ~~~~a~~e~l~~l~~~l~~l~~~l~~I~~eq~~~~~re~~~~~~~est~~ 188 (222)
|+.+-+-.+-+.+|..+.+..+.+..+.++++-++.+.+..........+
T Consensus 32 Y~~lm~g~~~~~lE~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 81 (151)
T PF14584_consen 32 YDALMRGKDGKNLEDLLNELFDQIDELKEELEELEKRIEELEEKLRNCVQ 81 (151)
T ss_pred HHHHhCCCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 44443334445778888888888888888877776666655555544433
No 81
>PF07125 DUF1378: Protein of unknown function (DUF1378); InterPro: IPR009808 This entry is represented by Bacteriophage 933W, Orf25. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. This family consists of hypothetical bacterial and phage proteins of around 59 residues in length. Bacterial members of this family seem to be specific to Enterobacteria. The function of this family is unknown.
Probab=33.60 E-value=72 Score=19.85 Aligned_cols=29 Identities=10% Similarity=0.382 Sum_probs=18.5
Q ss_pred HHHHHHhHHHHHHHHHHHHHHHHHHHHhhhc
Q 027560 189 RVAWLSILSLGVCIAVSSLQLWYLTRYFQKK 219 (222)
Q Consensus 189 rv~~~sil~i~vli~~~~~Qv~~lk~fF~~K 219 (222)
-++||+.+-.++.++.+.|- .+|.||++|
T Consensus 7 ~lLyFctvVcaLYLvsGGyk--~IRnY~r~K 35 (59)
T PF07125_consen 7 ILLYFCTVVCALYLVSGGYK--VIRNYFRRK 35 (59)
T ss_pred HHHHHHHHHHHHHHHhccHH--HHHHHHHHH
Confidence 35566666666666665553 478888876
No 82
>COG3117 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=33.18 E-value=1.1e+02 Score=24.34 Aligned_cols=19 Identities=21% Similarity=0.232 Sum_probs=11.0
Q ss_pred ehhhhhhHHHHHHHHHHHh
Q 027560 6 ISLDRATVLPLILLLCLAC 24 (222)
Q Consensus 6 ~~~~~~~~~~~~~~l~~~~ 24 (222)
|++|...+.+.++++|+..
T Consensus 2 ~~~Rw~~~ILll~a~~~~~ 20 (188)
T COG3117 2 MSRRWVYLILLLAALALSG 20 (188)
T ss_pred cchhHHHHHHHHHHHHHHH
Confidence 4556555555566666654
No 83
>PF11598 COMP: Cartilage oligomeric matrix protein; InterPro: IPR024665 Thrombospondins are adhesive glycoproteins that mediate cell-to-cell and cell-to-matrix interactions. Cartilage oligomeric matrix protein may play a role in the structural integrity of cartilage via its interaction with other extracellular matrix proteins such as collagen and fibronectin [, ]. Thrombospondin 3 and 4 and cartilage oligomeric matrix proteins contain a five-stranded coiled-coil domain represented by this entry. This domain has a binding site between two internal rings formed by Leu37 and Thr40 [].; PDB: 1MZ9_D 1FBM_A 1VDF_E.
Probab=33.07 E-value=1.1e+02 Score=18.24 Aligned_cols=35 Identities=17% Similarity=0.103 Sum_probs=23.9
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 027560 150 GVELHLKRLEAQVQSIHENLLFLKHREAEMREVSE 184 (222)
Q Consensus 150 ~l~~~l~~l~~~l~~I~~eq~~~~~re~~~~~~~e 184 (222)
.+-.++..++..+.++++..+.+..-....|.+.+
T Consensus 5 ~l~~ql~~l~~~l~elk~~l~~Q~kE~~~LRntI~ 39 (45)
T PF11598_consen 5 QLIKQLSELNQMLQELKELLRQQIKETRFLRNTIM 39 (45)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45677788888888888877766655555555543
No 84
>PF04136 Sec34: Sec34-like family ; InterPro: IPR007265 Sec34 and Sec35 form a sub-complex in a seven-protein complex that includes Dor1. This complex is thought to be important for tethering vesicles to the Golgi [].; GO: 0006886 intracellular protein transport, 0005801 cis-Golgi network, 0016020 membrane
Probab=32.45 E-value=2.3e+02 Score=21.63 Aligned_cols=53 Identities=13% Similarity=0.264 Sum_probs=35.3
Q ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhHHHHH
Q 027560 148 IEGVELHLKRLEAQVQSIHENLLFLKHREAEMREVSEVTNSRVAWLSILSLGV 200 (222)
Q Consensus 148 l~~l~~~l~~l~~~l~~I~~eq~~~~~re~~~~~~~est~~rv~~~sil~i~v 200 (222)
++.+...-..+.+....+++.-+-+-..+.+.....++...++-+|.-++.+.
T Consensus 30 l~~l~~~~~~Vs~kT~~l~~~ce~Ll~eq~~L~~~ae~I~~~L~yF~~Ld~it 82 (157)
T PF04136_consen 30 LDELQEQYNSVSEKTNSLHEACEQLLEEQTRLEELAEEISEKLQYFEELDPIT 82 (157)
T ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHhhHHHHH
Confidence 33344444444444455555555666777888889999999999998887654
No 85
>KOG0518 consensus Actin-binding cytoskeleton protein, filamin [Cytoskeleton]
Probab=30.98 E-value=3.2e+02 Score=27.65 Aligned_cols=41 Identities=12% Similarity=0.300 Sum_probs=29.3
Q ss_pred eeEEEEECCCCCeEE---eeeccc-eeeEEEEeeccceeeeeeee
Q 027560 74 TVSAKVTSPYGNNLH---HNENVT-HGQFAFTTTEAGNYMACFWL 114 (222)
Q Consensus 74 ~i~v~v~~p~g~~v~---~~~~~~-~~~f~f~~~~~G~y~iCf~n 114 (222)
.+.+.|.||+|+... .+.... ...++|.+...|.|.+=+.-
T Consensus 391 ~levqV~gp~Gk~~~~~V~d~~~~~~h~vsY~pd~~G~y~i~v~~ 435 (1113)
T KOG0518|consen 391 LLEVQVVGPEGKEKEVVVRDNGRGGIHIVTYVPDCPGRYLIVVFY 435 (1113)
T ss_pred eEEEEEECCCCCceeeEEEecCCCceEEEEEcCCCCCceEEEEEE
Confidence 699999999998531 222222 45678888899999987743
No 86
>PF14054 DUF4249: Domain of unknown function (DUF4249)
Probab=30.83 E-value=2.1e+02 Score=23.75 Aligned_cols=43 Identities=12% Similarity=-0.009 Sum_probs=19.1
Q ss_pred ceeeEEcCCCcEEEEEEEEeeCCCC--CCCCeeEEEE-ECCCCCeE
Q 027560 45 KCVSEEINSNVVVLADYYVIDEAHP--EHPPTVSAKV-TSPYGNNL 87 (222)
Q Consensus 45 ~Cf~e~v~~~~~i~~~y~v~~~~~~--~~~~~i~v~v-~~p~g~~v 87 (222)
+|+...-.....+.++...--.+.. ..-.+..|.| .|..+...
T Consensus 31 ~~~i~~~~~~~~V~Ls~s~~~~~~~~~~~v~~A~V~i~~~~~~~~~ 76 (298)
T PF14054_consen 31 EGYITNPGDPQTVRLSRSVPYFDNSPPEPVSGATVTIYEDGQGNEY 76 (298)
T ss_pred EEEEecCCCcEEEEEEEeecccCCCCCcccCCcEEEEEeCCCcceE
Confidence 3444433334566666655321111 1012667777 44444443
No 87
>PRK02919 oxaloacetate decarboxylase subunit gamma; Provisional
Probab=30.53 E-value=28 Score=23.64 Aligned_cols=21 Identities=38% Similarity=0.502 Sum_probs=16.4
Q ss_pred ceehhhhhhHHHHHHHHHHHh
Q 027560 4 TLISLDRATVLPLILLLCLAC 24 (222)
Q Consensus 4 ~~~~~~~~~~~~~~~~l~~~~ 24 (222)
.+|..||++++++|.+|-++.
T Consensus 12 ~lMvlGMg~VfvFL~lLI~~i 32 (82)
T PRK02919 12 TLMFLGMGFVLAFLFLLIFAI 32 (82)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 578899999888877776664
No 88
>PHA02650 hypothetical protein; Provisional
Probab=30.37 E-value=66 Score=21.64 Aligned_cols=31 Identities=10% Similarity=-0.032 Sum_probs=19.8
Q ss_pred HHHhHHHHHHHhHHHHHHHHHHHHHHHHHHH
Q 027560 184 EVTNSRVAWLSILSLGVCIAVSSLQLWYLTR 214 (222)
Q Consensus 184 est~~rv~~~sil~i~vli~~~~~Qv~~lk~ 214 (222)
.+....-+++-++-+++++++.++-..|||-
T Consensus 42 ~~~~~~~~~~~ii~i~~v~i~~l~~flYLK~ 72 (81)
T PHA02650 42 KSVSWFNGQNFIFLIFSLIIVALFSFFVFKG 72 (81)
T ss_pred cccCCchHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344555555566666777777777777774
No 89
>PF02439 Adeno_E3_CR2: Adenovirus E3 region protein CR2; InterPro: IPR003470 Early region 3 (E3) of human adenoviruses (Ads) codes for proteins that appear to control viral interactions with the host []. This region called CR1 (conserved region 1) [] is found three times in Human adenovirus 19 (a subgroup D adenovirus) 49 kDa protein in the E3 region. CR1 is also found in the 20.1 Kd protein of subgroup B adenoviruses. The function of this 80 amino acid region is unknown. This region is probably a divergent immunoglobulin domain.
Probab=29.76 E-value=58 Score=18.68 Aligned_cols=18 Identities=28% Similarity=0.702 Sum_probs=12.9
Q ss_pred hhHHHHHHHHHHHhhhcc
Q 027560 11 ATVLPLILLLCLACYICV 28 (222)
Q Consensus 11 ~~~~~~~~~l~~~~~~~~ 28 (222)
+++-.+++.+|.++++|-
T Consensus 12 V~vg~~iiii~~~~YaCc 29 (38)
T PF02439_consen 12 VVVGMAIIIICMFYYACC 29 (38)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 445567778888888774
No 90
>PF08537 NBP1: Fungal Nap binding protein NBP1; InterPro: IPR013743 NBP1 is a nuclear protein which has been shown in Saccharomyces cerevisiae (Bakers yeast) to be essential for the G2/M transition of the cell cycle.
Probab=29.49 E-value=1.4e+02 Score=25.72 Aligned_cols=41 Identities=24% Similarity=0.424 Sum_probs=32.1
Q ss_pred ccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 027560 147 KIEGVELHLKRLEAQVQSIHENLLFLKHREAEMREVSEVTN 187 (222)
Q Consensus 147 ~l~~l~~~l~~l~~~l~~I~~eq~~~~~re~~~~~~~est~ 187 (222)
.++.++.+|..+...|+.++..++|.+++-.-++.+..+.+
T Consensus 183 k~~~l~~~l~~~~~eL~~~~k~L~faqekn~LlqslLddan 223 (323)
T PF08537_consen 183 KIDELEERLNDLEKELEITKKDLKFAQEKNALLQSLLDDAN 223 (323)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhc
Confidence 35678888888888888888888888888887777766544
No 91
>PF15240 Pro-rich: Proline-rich
Probab=29.46 E-value=36 Score=26.70 Aligned_cols=13 Identities=38% Similarity=0.411 Sum_probs=5.7
Q ss_pred hhHHHHHHHHHHH
Q 027560 11 ATVLPLILLLCLA 23 (222)
Q Consensus 11 ~~~~~~~~~l~~~ 23 (222)
+|+||-++||+|.
T Consensus 2 LlVLLSvALLALS 14 (179)
T PF15240_consen 2 LLVLLSVALLALS 14 (179)
T ss_pred hhHHHHHHHHHhh
Confidence 4444444444444
No 92
>PHA02932 hypothetical protein; Provisional
Probab=29.24 E-value=2.6e+02 Score=22.27 Aligned_cols=51 Identities=18% Similarity=0.209 Sum_probs=27.6
Q ss_pred eeEEEEEcCC-CcceeeEE--cCCCcEEEE-EEEEeeCCCCCCCCeeEEEEECCCCCeEEeeecc
Q 027560 33 EAIWLQIPSS-GTKCVSEE--INSNVVVLA-DYYVIDEAHPEHPPTVSAKVTSPYGNNLHHNENV 93 (222)
Q Consensus 33 ~~l~f~i~~~-~~~Cf~e~--v~~~~~i~~-~y~v~~~~~~~~~~~i~v~v~~p~g~~v~~~~~~ 93 (222)
-++...|+.. .++|+..+ +..++.+.+ .|. . .|++++.+-++..|-..++.
T Consensus 41 IGLny~I~Eti~~EC~m~e~yi~~nstivlTGYG---------l-~Ini~it~i~q~~VAaaeG~ 95 (221)
T PHA02932 41 IGLNYDINETIIGECHMSESYIDRNSTIVLTGYG---------L-EINITITDIDQRFVAAAEGV 95 (221)
T ss_pred eeeceecchhhhceeeecceeecccceEEEEccc---------E-EEEEEEEeecceeEeeeecc
Confidence 3445556432 47898873 445555543 232 2 56666666656555555444
No 93
>PF14686 fn3_3: Polysaccharide lyase family 4, domain II; PDB: 1NKG_A 2XHN_B 3NJX_A 3NJV_A.
Probab=29.11 E-value=2e+02 Score=19.93 Aligned_cols=29 Identities=14% Similarity=0.291 Sum_probs=17.6
Q ss_pred EEeeeccceeeEEEEeeccceeeeeeeeC
Q 027560 87 LHHNENVTHGQFAFTTTEAGNYMACFWLG 115 (222)
Q Consensus 87 v~~~~~~~~~~f~f~~~~~G~y~iCf~n~ 115 (222)
.|+.+-.++|.|++.--.+|.|.+-...+
T Consensus 41 qYwt~td~~G~Fti~~V~pGtY~L~ay~~ 69 (95)
T PF14686_consen 41 QYWTRTDSDGNFTIPNVRPGTYRLYAYAD 69 (95)
T ss_dssp EEEEE--TTSEEE---B-SEEEEEEEEE-
T ss_pred cEEEEeCCCCcEEeCCeeCcEeEEEEEEe
Confidence 34444447899999999999999988874
No 94
>PHA03351 tegument protein UL16; Provisional
Probab=29.04 E-value=56 Score=25.32 Aligned_cols=23 Identities=9% Similarity=0.297 Sum_probs=18.5
Q ss_pred cceeeEEcCCCcEEEEEEEEeeC
Q 027560 44 TKCVSEEINSNVVVLADYYVIDE 66 (222)
Q Consensus 44 ~~Cf~e~v~~~~~i~~~y~v~~~ 66 (222)
.-|+|++|.++..+-+.|.....
T Consensus 65 sicyy~nvsddeiigvaf~~q~n 87 (235)
T PHA03351 65 SICYYENVSDDEIIGVAFTSQHN 87 (235)
T ss_pred EEEEecccCccceEEEEEEeccC
Confidence 46999999999988888877643
No 95
>TIGR01195 oadG_fam sodium pump decarboxylases, gamma subunit. Most sequences scoring between the noise and trusted cutoffs are eukaryotic sodium channel proteins.
Probab=29.01 E-value=31 Score=23.38 Aligned_cols=22 Identities=32% Similarity=0.339 Sum_probs=18.0
Q ss_pred cceehhhhhhHHHHHHHHHHHh
Q 027560 3 ETLISLDRATVLPLILLLCLAC 24 (222)
Q Consensus 3 ~~~~~~~~~~~~~~~~~l~~~~ 24 (222)
-.+|..++++++++|.+|.++.
T Consensus 8 ~~l~v~GM~~VF~fL~lLi~~i 29 (82)
T TIGR01195 8 ATLTVLGMGIVFLFLSLLIYAV 29 (82)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3578899999999988887775
No 96
>PRK14155 heat shock protein GrpE; Provisional
Probab=28.94 E-value=3.1e+02 Score=22.10 Aligned_cols=37 Identities=16% Similarity=0.124 Sum_probs=23.6
Q ss_pred ccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 027560 147 KIEGVELHLKRLEAQVQSIHENLLFLKHREAEMREVS 183 (222)
Q Consensus 147 ~l~~l~~~l~~l~~~l~~I~~eq~~~~~re~~~~~~~ 183 (222)
.++.++.++..+.+.+...+.+.+-++.|..+.+...
T Consensus 21 ~l~~le~e~~elkd~~lR~~AefeN~RKR~~kE~e~~ 57 (208)
T PRK14155 21 EIEALKAEVAALKDQALRYAAEAENTKRRAEREMNDA 57 (208)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3556777777777777777776666666655555443
No 97
>PF13715 DUF4480: Domain of unknown function (DUF4480)
Probab=28.51 E-value=1.8e+02 Score=19.13 Aligned_cols=39 Identities=13% Similarity=0.198 Sum_probs=26.3
Q ss_pred CeeEEEEECCCCCeEEeeeccceeeEEEEeeccceeeeeeeeCC
Q 027560 73 PTVSAKVTSPYGNNLHHNENVTHGQFAFTTTEAGNYMACFWLGS 116 (222)
Q Consensus 73 ~~i~v~v~~p~g~~v~~~~~~~~~~f~f~~~~~G~y~iCf~n~~ 116 (222)
+.+.+.+.++. . .... ..+|.|.+.. ..|.|.+-|+-..
T Consensus 16 ~~a~V~~~~~~-~--~~~T-d~~G~F~i~~-~~g~~~l~is~~G 54 (88)
T PF13715_consen 16 PGATVYLKNTK-K--GTVT-DENGRFSIKL-PEGDYTLKISYIG 54 (88)
T ss_pred cCeEEEEeCCc-c--eEEE-CCCeEEEEEE-cCCCeEEEEEEeC
Confidence 37777777664 1 1112 2389999994 4899999997543
No 98
>PF10794 DUF2606: Protein of unknown function (DUF2606); InterPro: IPR019730 This entry represents bacterial proteins with unknown function.
Probab=28.29 E-value=2.4e+02 Score=20.66 Aligned_cols=22 Identities=18% Similarity=0.449 Sum_probs=17.3
Q ss_pred eeeEEEEeeccceeeeeeeeCC
Q 027560 95 HGQFAFTTTEAGNYMACFWLGS 116 (222)
Q Consensus 95 ~~~f~f~~~~~G~y~iCf~n~~ 116 (222)
+|++.......|.|-+-|.|..
T Consensus 87 ~Gki~Wk~~~kG~Y~v~l~n~e 108 (131)
T PF10794_consen 87 EGKIIWKNGRKGKYIVFLPNGE 108 (131)
T ss_pred CCcEEEecCCcceEEEEEcCCC
Confidence 6777777788899999997653
No 99
>PRK14163 heat shock protein GrpE; Provisional
Probab=28.00 E-value=3.3e+02 Score=22.10 Aligned_cols=41 Identities=15% Similarity=0.166 Sum_probs=27.1
Q ss_pred ccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 027560 147 KIEGVELHLKRLEAQVQSIHENLLFLKHREAEMREVSEVTN 187 (222)
Q Consensus 147 ~l~~l~~~l~~l~~~l~~I~~eq~~~~~re~~~~~~~est~ 187 (222)
.++.++.++..+.+.+...+.+..-++.|..+-+.......
T Consensus 48 ~l~~l~~e~~el~d~~lR~~AEfeN~rkR~~kE~e~~~~~a 88 (214)
T PRK14163 48 QLDQVRTALGERTADLQRLQAEYQNYRRRVERDRVTVKEIA 88 (214)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45667777777777777777777666666666555544443
No 100
>PHA03054 IMV membrane protein; Provisional
Probab=27.83 E-value=82 Score=20.71 Aligned_cols=28 Identities=18% Similarity=0.164 Sum_probs=18.7
Q ss_pred HhHHHHHHHhHHHHHHHHHHHHHHHHHH
Q 027560 186 TNSRVAWLSILSLGVCIAVSSLQLWYLT 213 (222)
Q Consensus 186 t~~rv~~~sil~i~vli~~~~~Qv~~lk 213 (222)
...+-++|-++-++.++++.++-..|||
T Consensus 43 ~~~~~~~~~ii~l~~v~~~~l~~flYLK 70 (72)
T PHA03054 43 TGCWGWYWLIIIFFIVLILLLLIYLYLK 70 (72)
T ss_pred cCCchHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3445555556667777777777778877
No 101
>PF03100 CcmE: CcmE; InterPro: IPR004329 CcmE is the product of one of a cluster of Ccm genes that are necessary for cytochrome c biosynthesis in eubacteria. Expression of these proteins is induced when the organisms are grown under anaerobic conditions with nitrate or nitrite as the final electron acceptor.; GO: 0017003 protein-heme linkage, 0017004 cytochrome complex assembly, 0005886 plasma membrane; PDB: 1SR3_A 2KCT_A 1J6Q_A 1LM0_A.
Probab=27.54 E-value=99 Score=22.76 Aligned_cols=32 Identities=16% Similarity=0.132 Sum_probs=17.2
Q ss_pred CCcEEEEEEEEeeCCC---CCCCCeeEEEEECCCCC
Q 027560 53 SNVVVLADYYVIDEAH---PEHPPTVSAKVTSPYGN 85 (222)
Q Consensus 53 ~~~~i~~~y~v~~~~~---~~~~~~i~v~v~~p~g~ 85 (222)
.+..+++.=.+..+.. ++.. .+.|.|.|....
T Consensus 49 ~~~~vrv~G~V~~gSv~~~~~~~-~~~F~i~D~~~~ 83 (131)
T PF03100_consen 49 VGRKVRVGGLVVEGSVEYDPDGN-TLTFTITDGGKE 83 (131)
T ss_dssp TTSEEEEEEEEECTTEEE-TTSS-EEEEEEE-SS-E
T ss_pred CCceEEEeeEEccCCEEEcCCCC-EEEEEEEECCcE
Confidence 4566666655553311 1233 888999887544
No 102
>PHA02819 hypothetical protein; Provisional
Probab=27.29 E-value=88 Score=20.55 Aligned_cols=28 Identities=21% Similarity=0.345 Sum_probs=18.7
Q ss_pred HhHHHHHHHhHHHHHHHHHHHHHHHHHH
Q 027560 186 TNSRVAWLSILSLGVCIAVSSLQLWYLT 213 (222)
Q Consensus 186 t~~rv~~~sil~i~vli~~~~~Qv~~lk 213 (222)
...+-+++-++-++.++++.++-..|||
T Consensus 41 ~~~~~~~~~ii~l~~~~~~~~~~flYLK 68 (71)
T PHA02819 41 KKSFLRYYLIIGLVTIVFVIIFIIFYLK 68 (71)
T ss_pred cCChhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445555556666777777777778877
No 103
>PF05506 DUF756: Domain of unknown function (DUF756); InterPro: IPR008475 This domain is found, normally as a tandem repeat, at the C terminus of bacterial phospholipase C proteins.; GO: 0004629 phospholipase C activity, 0016042 lipid catabolic process
Probab=27.28 E-value=2e+02 Score=19.31 Aligned_cols=35 Identities=14% Similarity=0.075 Sum_probs=16.1
Q ss_pred ceeeEEcCCCcEEEEEEEEeeCCCCCCCCeeEEEEECCCC
Q 027560 45 KCVSEEINSNVVVLADYYVIDEAHPEHPPTVSAKVTSPYG 84 (222)
Q Consensus 45 ~Cf~e~v~~~~~i~~~y~v~~~~~~~~~~~i~v~v~~p~g 84 (222)
......|+.|+.....+.+... . .-.++.|+.|+|
T Consensus 47 ~~~~~~v~ag~~~~~~w~l~~s----~-gwYDl~v~~~~~ 81 (89)
T PF05506_consen 47 GPWTYTVAAGQTVSLTWPLAAS----G-GWYDLTVTGPNG 81 (89)
T ss_pred CCEEEEECCCCEEEEEEeecCC----C-CcEEEEEEcCCC
Confidence 3444555555555555544211 0 144555555555
No 104
>TIGR03042 PS_II_psbQ_bact photosystem II protein PsbQ. This protein through the member sll1638 from Synechocystis sp. PCC 6803, was shown to be part of the cyanobacteria photosystem II. It is homologous to (but quite diverged from) the chloroplast PsbQ protein, called oxygen-evolving enhancer protein 3 (OEE3). We designate this cyanobacteria protein PsbQ by homology.
Probab=27.12 E-value=58 Score=24.59 Aligned_cols=21 Identities=33% Similarity=0.486 Sum_probs=13.1
Q ss_pred hhhhHHHHHHHHHHHhhhcccC
Q 027560 9 DRATVLPLILLLCLACYICVVP 30 (222)
Q Consensus 9 ~~~~~~~~~~~l~~~~~~~~~~ 30 (222)
|+.+.+++++++|+ +.+|.-.
T Consensus 2 r~~~s~~Lv~~~~~-Lvsc~~p 22 (142)
T TIGR03042 2 RSLASLLLVLLLTF-LVSCSGP 22 (142)
T ss_pred hhHHHHHHHHHHHH-HHHcCCC
Confidence 56666666667777 5566553
No 105
>PRK13792 lysozyme inhibitor; Provisional
Probab=26.69 E-value=2.1e+02 Score=21.13 Aligned_cols=49 Identities=12% Similarity=0.215 Sum_probs=23.8
Q ss_pred HHHHHHHHHHhhhcccCeeeeE-----EEEEcCCCc---ceeeEEcCCCcEEEEEEE
Q 027560 14 LPLILLLCLACYICVVPVTEAI-----WLQIPSSGT---KCVSEEINSNVVVLADYY 62 (222)
Q Consensus 14 ~~~~~~l~~~~~~~~~~~~~~l-----~f~i~~~~~---~Cf~e~v~~~~~i~~~y~ 62 (222)
+++++.+.+++++|........ ...++++.. +=+...-..+..+.+.|.
T Consensus 6 ~~ll~~~~~lLsaCs~~~~~~~~~~~~~l~ip~~~~~~~~tv~YqC~~~~~~tV~y~ 62 (127)
T PRK13792 6 WLLLAAVPVVLVACGGSDDDKQTAQVDYLALPGDAKLDTRSVDYKCENGRKFTVQYL 62 (127)
T ss_pred HHHHHHHHhheecccCCCCCcccccceeeecCCCcccccceEEEECCCCCEEEEEEe
Confidence 3444444444556666554432 345655322 334444444555665554
No 106
>PRK13254 cytochrome c-type biogenesis protein CcmE; Reviewed
Probab=26.62 E-value=1.6e+02 Score=22.41 Aligned_cols=56 Identities=14% Similarity=0.004 Sum_probs=25.6
Q ss_pred cccCeeeeEEEEEcCCCcceeeEEcCCCcEEEEEEEEeeCCC--CCCCCeeEEEEECCCCC
Q 027560 27 CVVPVTEAIWLQIPSSGTKCVSEEINSNVVVLADYYVIDEAH--PEHPPTVSAKVTSPYGN 85 (222)
Q Consensus 27 ~~~~~~~~l~f~i~~~~~~Cf~e~v~~~~~i~~~y~v~~~~~--~~~~~~i~v~v~~p~g~ 85 (222)
.+....+.+.+.+.|.+-. -.....|..+++.=.|.++.. .+.. .+.|.|.|....
T Consensus 26 ~~~a~~~~~~yf~tpse~~--~~~~~~g~~vrvgG~V~~gSi~~~~~~-~~~F~ltD~~~~ 83 (148)
T PRK13254 26 VLYALRQNIVFFYTPSEVA--EGEAPAGRRFRLGGLVEKGSVQRGDGL-TVRFVVTDGNAT 83 (148)
T ss_pred HHHHHHhCCceeeCHHHHh--cCCccCCCeEEEeEEEecCcEEeCCCC-EEEEEEEeCCeE
Confidence 3334455555555544321 111133444444433333211 0222 788998887544
No 107
>COG5074 t-SNARE complex subunit, syntaxin [Intracellular trafficking and secretion]
Probab=25.91 E-value=2.5e+02 Score=23.26 Aligned_cols=23 Identities=17% Similarity=0.294 Sum_probs=14.6
Q ss_pred cccchHHHHHHHHHHHHHHHHHH
Q 027560 146 DKIEGVELHLKRLEAQVQSIHEN 168 (222)
Q Consensus 146 e~l~~l~~~l~~l~~~l~~I~~e 168 (222)
.++..++..+..|...++.+...
T Consensus 185 ~~ikkiEkt~ael~qLfndm~~~ 207 (280)
T COG5074 185 QEIKKIEKTMAELTQLFNDMEEL 207 (280)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 34667777777766666665543
No 108
>KOG3091 consensus Nuclear pore complex, p54 component (sc Nup57) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=25.88 E-value=3e+02 Score=25.30 Aligned_cols=50 Identities=8% Similarity=0.120 Sum_probs=34.4
Q ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhHH
Q 027560 148 IEGVELHLKRLEAQVQSIHENLLFLKHREAEMREVSEVTNSRVAWLSILS 197 (222)
Q Consensus 148 l~~l~~~l~~l~~~l~~I~~eq~~~~~re~~~~~~~est~~rv~~~sil~ 197 (222)
++.-..+|+.+.+.+.+++.++---..+-.++++...+...|++.-.+.+
T Consensus 350 ~~~~r~ri~~i~e~v~eLqk~~ad~~~KI~~~k~r~~~Ls~RiLRv~ikq 399 (508)
T KOG3091|consen 350 VKQHRIRINAIGERVTELQKHHADAVAKIEEAKNRHVELSHRILRVMIKQ 399 (508)
T ss_pred HHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33445566666667777776666666777788888888888988755544
No 109
>cd00193 t_SNARE Soluble NSF (N-ethylmaleimide-sensitive fusion protein)-Attachment protein (SNAP) REceptor domain; these alpha-helical motifs form twisted and parallel heterotetrameric helix bundles; the core complex contains one helix from a protein that is anchored in the vesicle membrane (synaptobrevin), one helix from a protein of the target membrane (syntaxin), and two helices from another protein anchored in the target membrane (SNAP-25); their interaction forms a core which is composed of a polar zero layer, a flanking leucine-zipper layer acts as a water tight shield to isolate ionic interactions in the zero layer from the surrounding solvent
Probab=25.19 E-value=1.6e+02 Score=17.52 Aligned_cols=43 Identities=7% Similarity=0.079 Sum_probs=25.2
Q ss_pred ccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHH
Q 027560 147 KIEGVELHLKRLEAQVQSIHENLLFLKHREAEMREVSEVTNSR 189 (222)
Q Consensus 147 ~l~~l~~~l~~l~~~l~~I~~eq~~~~~re~~~~~~~est~~r 189 (222)
.++.++..+..+.....+|..+..-+...-++-....+.+..+
T Consensus 7 ~l~~l~~~i~~l~~l~~~i~~~v~~Q~~~ld~i~~~~~~~~~~ 49 (60)
T cd00193 7 ELEQLEASIGELKQIFLDLGTEVEEQGELLDRIEDNVDNADVN 49 (60)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4567777777777777777766555544444444444444433
No 110
>PHA02975 hypothetical protein; Provisional
Probab=25.01 E-value=1.3e+02 Score=19.63 Aligned_cols=28 Identities=14% Similarity=0.263 Sum_probs=19.2
Q ss_pred hHHHHHHHhHHHHHHHHHHHHHHHHHHH
Q 027560 187 NSRVAWLSILSLGVCIAVSSLQLWYLTR 214 (222)
Q Consensus 187 ~~rv~~~sil~i~vli~~~~~Qv~~lk~ 214 (222)
.++-++|-++-++.++.+.++-..|||-
T Consensus 40 ~~~~~~~~ii~i~~v~~~~~~~flYLK~ 67 (69)
T PHA02975 40 KSSLSIILIIFIIFITCIAVFTFLYLKL 67 (69)
T ss_pred CCchHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4455556666677777777888888873
No 111
>PF14235 DUF4337: Domain of unknown function (DUF4337)
Probab=24.78 E-value=3.2e+02 Score=20.89 Aligned_cols=66 Identities=12% Similarity=0.070 Sum_probs=41.7
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhHHHHHHHHHHHHHHHHHHH
Q 027560 149 EGVELHLKRLEAQVQSIHENLLFLKHREAEMREVSEVTNSRVAWLSILSLGVCIAVSSLQLWYLTR 214 (222)
Q Consensus 149 ~~l~~~l~~l~~~l~~I~~eq~~~~~re~~~~~~~est~~rv~~~sil~i~vli~~~~~Qv~~lk~ 214 (222)
+.++.++.+.......++.+.+-+..+-+......+....+=-.|.+..+++=|++.+.-+-.|.+
T Consensus 69 ~~~~~~i~~Y~~~~~~~~~e~~~l~~~A~~~e~~~d~~~~~~~~f~~a~~~lQIaI~Lasit~Lt~ 134 (157)
T PF14235_consen 69 AAYQKKIARYKKEKARYKSEAEELEAKAKEAEAESDHALHHHHRFDLAVALLQIAIVLASITALTK 134 (157)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHhcccchhHHHHHHHHHHHHHHHHHHHHH
Confidence 456667777777777777776666666555555666666666666666666555555555554443
No 112
>PF03554 Herpes_UL73: UL73 viral envelope glycoprotein ; InterPro: IPR005211 This entry represents a conserved region found in a number of viral proteins: BLRF1, U46, 53, and UL73, collectively known as glycoprotein N. These UL73-like envelope glycoproteins, which associate in a high molecular mass complex with their counterpart protein gM, induce neutralizing antibody responses in the host. These glycoproteins are highly polymorphic, particularly in the N-terminal region [].; GO: 0019031 viral envelope
Probab=24.59 E-value=1.2e+02 Score=20.56 Aligned_cols=28 Identities=18% Similarity=0.229 Sum_probs=21.6
Q ss_pred HHhHHHHHHHhHHHHHHHHHHHHHHHHH
Q 027560 185 VTNSRVAWLSILSLGVCIAVSSLQLWYL 212 (222)
Q Consensus 185 st~~rv~~~sil~i~vli~~~~~Qv~~l 212 (222)
+..+-..+|.++..+++++.+++=+.|+
T Consensus 44 sl~SFsSIW~iiN~~il~~A~~vyLry~ 71 (82)
T PF03554_consen 44 SLSSFSSIWAIINVVILLCAFCVYLRYL 71 (82)
T ss_pred eehHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445667899999999998888766664
No 113
>PRK14154 heat shock protein GrpE; Provisional
Probab=24.04 E-value=3.9e+02 Score=21.58 Aligned_cols=42 Identities=12% Similarity=0.080 Sum_probs=26.2
Q ss_pred ccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhH
Q 027560 147 KIEGVELHLKRLEAQVQSIHENLLFLKHREAEMREVSEVTNS 188 (222)
Q Consensus 147 ~l~~l~~~l~~l~~~l~~I~~eq~~~~~re~~~~~~~est~~ 188 (222)
.++.++.++..+.+.+.....+.+-++.|..+.+........
T Consensus 60 el~~le~e~~elkd~~lRl~ADfeNyRKR~~kE~e~~~~~a~ 101 (208)
T PRK14154 60 QLTRMERKVDEYKTQYLRAQAEMDNLRKRIEREKADIIKFGS 101 (208)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 355677777777777777777666666666655554444333
No 114
>PF05015 Plasmid_killer: Plasmid maintenance system killer protein; InterPro: IPR007711 Several plasmids with proteic killer gene systems have been reported. All of them encode a stable toxin and an unstable antidote. Upon loss of the plasmid, the less stable inhibitor is inactivated more rapidly than the toxin, allowing the toxin to be activated. The activation of those systems result in cell filamentation and cessation of viable cell production. It has been verified that both the stable killer and the unstable inhibitor of the systems are short polypeptides. This family corresponds to the toxin.
Probab=24.03 E-value=72 Score=21.94 Aligned_cols=31 Identities=26% Similarity=0.460 Sum_probs=22.4
Q ss_pred CCeEEeeeccceeeEEEEeeccceeeeeeeeCC
Q 027560 84 GNNLHHNENVTHGQFAFTTTEAGNYMACFWLGS 116 (222)
Q Consensus 84 g~~v~~~~~~~~~~f~f~~~~~G~y~iCf~n~~ 116 (222)
+.-.+.-.+...|.++... +|.|++||.-..
T Consensus 51 ~~r~h~L~G~~~g~~Si~i--~~~~RliF~~~~ 81 (93)
T PF05015_consen 51 SNRLHKLKGDRKGQWSIRI--NGNWRLIFRFED 81 (93)
T ss_pred CCCcccccCCCCCcEEEEe--CCCEEEEEEEeC
Confidence 4445666666688888866 778999997544
No 115
>PF09425 CCT_2: Divergent CCT motif; InterPro: IPR018467 The short CCT (CO, COL, TOC1) motif is found in a number of plant proteins, including Constans (CO), Constans-like (COL) and TOC1. The CCT motif is about 45 amino acids long and contains a putative nuclear localisation signal within the second half of the CCT motif []. The CCT motif is found in the Arabidopsis circadian rhythm protein TOC1, an autoregulatory response regulator homologue the controls the photoperiodic flowering through its clock function []. ; GO: 0005515 protein binding; PDB: 3OGK_V 3OGL_S 3OGM_W.
Probab=23.74 E-value=43 Score=17.69 Aligned_cols=10 Identities=40% Similarity=0.823 Sum_probs=7.0
Q ss_pred HHHHHhhhcc
Q 027560 211 YLTRYFQKKK 220 (222)
Q Consensus 211 ~lk~fF~~Kk 220 (222)
.|.+|++++|
T Consensus 7 SLqRFLeKRK 16 (27)
T PF09425_consen 7 SLQRFLEKRK 16 (27)
T ss_dssp HHHHHHHHH-
T ss_pred HHHHHHHHHH
Confidence 5778888775
No 116
>KOG3385 consensus V-SNARE [Intracellular trafficking, secretion, and vesicular transport]
Probab=23.48 E-value=2.6e+02 Score=20.33 Aligned_cols=22 Identities=18% Similarity=0.315 Sum_probs=11.3
Q ss_pred cchHHHHHHHHHHHHHHHHHHH
Q 027560 148 IEGVELHLKRLEAQVQSIHENL 169 (222)
Q Consensus 148 l~~l~~~l~~l~~~l~~I~~eq 169 (222)
++.+..++..|.+.--+|-+|.
T Consensus 38 ~e~L~~kV~aLKsLs~dIg~Ev 59 (118)
T KOG3385|consen 38 AESLQQKVKALKSLSLDIGDEV 59 (118)
T ss_pred HHHHHHHHHHHHHHHHHhcccc
Confidence 4455555555555554444443
No 117
>PF13874 Nup54: Nucleoporin complex subunit 54; PDB: 3T97_B.
Probab=23.32 E-value=3.2e+02 Score=20.31 Aligned_cols=49 Identities=16% Similarity=0.227 Sum_probs=35.5
Q ss_pred hccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHH
Q 027560 144 KKDKIEGVELHLKRLEAQVQSIHENLLFLKHREAEMREVSEVTNSRVAW 192 (222)
Q Consensus 144 ~~e~l~~l~~~l~~l~~~l~~I~~eq~~~~~re~~~~~~~est~~rv~~ 192 (222)
..+.++.....++.+.+.+..+.....-...|-.+.+........|++-
T Consensus 42 Q~~~~~~~~~~l~~i~~~l~~L~~~~~~~~~rl~~~r~r~~~L~hR~l~ 90 (141)
T PF13874_consen 42 QEEEIAQHRERLKEINDKLEELQKHDLETSARLEEARRRHQELSHRLLR 90 (141)
T ss_dssp ----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3456778888889999999999777767777777777777777777654
No 118
>PF14109 GldH_lipo: GldH lipoprotein
Probab=23.27 E-value=3.1e+02 Score=20.15 Aligned_cols=42 Identities=14% Similarity=0.226 Sum_probs=25.6
Q ss_pred CeeEEEEECCCCCeEEeeec-cceeeEEE----Eeeccceeeeeeee
Q 027560 73 PTVSAKVTSPYGNNLHHNEN-VTHGQFAF----TTTEAGNYMACFWL 114 (222)
Q Consensus 73 ~~i~v~v~~p~g~~v~~~~~-~~~~~f~f----~~~~~G~y~iCf~n 114 (222)
+.+.+.+.||+|+.+-+.-+ ..+.++-+ ..+.+|.|.|.+.-
T Consensus 68 dtl~~~Lad~~G~w~G~G~~~~~e~~~~~~~~~~f~~~G~Y~~~i~q 114 (131)
T PF14109_consen 68 DTLECELADPDGKWLGKGIGDLYEYKLPYKENVRFPRKGSYTFTIEQ 114 (131)
T ss_pred eeEEEEEECCCCcEeeeeEeEeEEEEEEeecceecCCCCcEEEEEEe
Confidence 47788888888876543221 22333322 33678999999854
No 119
>COG2869 NqrC Na+-transporting NADH:ubiquinone oxidoreductase, subunit NqrC [Energy production and conversion]
Probab=23.13 E-value=44 Score=27.46 Aligned_cols=18 Identities=33% Similarity=0.632 Sum_probs=12.7
Q ss_pred HHHHHHHHHHHhhhcccC
Q 027560 13 VLPLILLLCLACYICVVP 30 (222)
Q Consensus 13 ~~~~~~~l~~~~~~~~~~ 30 (222)
-++|++.|||.|+.-++.
T Consensus 13 tllvvl~lsLvcsvivag 30 (264)
T COG2869 13 TLLVVLVLSLVCSVIVAG 30 (264)
T ss_pred eehhHHHHHHHHHHHHhh
Confidence 367888889988655443
No 120
>PF11444 DUF2895: Protein of unknown function (DUF2895); InterPro: IPR021548 This is a bacterial family of uncharacterised proteins.
Probab=23.08 E-value=71 Score=25.59 Aligned_cols=29 Identities=21% Similarity=0.312 Sum_probs=18.1
Q ss_pred HHHHHHHHHHhhhcccCeeeeEEEEEcCC
Q 027560 14 LPLILLLCLACYICVVPVTEAIWLQIPSS 42 (222)
Q Consensus 14 ~~~~~~l~~~~~~~~~~~~~~l~f~i~~~ 42 (222)
..+|+++|+++.......-..+++++||.
T Consensus 18 i~~L~~l~~~~~~gw~~aP~~ltih~PPD 46 (199)
T PF11444_consen 18 IGLLFLLLLLLIIGWMRAPKRLTIHNPPD 46 (199)
T ss_pred HHHHHHHHHHHHHHHHhCCCceEEECCCc
Confidence 33445555555445555568889998874
No 121
>PRK14143 heat shock protein GrpE; Provisional
Probab=23.05 E-value=4.3e+02 Score=21.77 Aligned_cols=37 Identities=19% Similarity=0.286 Sum_probs=22.5
Q ss_pred ccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 027560 147 KIEGVELHLKRLEAQVQSIHENLLFLKHREAEMREVS 183 (222)
Q Consensus 147 ~l~~l~~~l~~l~~~l~~I~~eq~~~~~re~~~~~~~ 183 (222)
.++.++.++..+.+.+..+..+..-++.|..+.+...
T Consensus 75 el~~l~~e~~elkd~~lR~~AdfeN~RKR~~kE~e~~ 111 (238)
T PRK14143 75 ELESLKQELEELNSQYMRIAADFDNFRKRTSREQEDL 111 (238)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3556666677777776666666666665555544433
No 122
>PRK06798 fliD flagellar capping protein; Validated
Probab=22.96 E-value=5.3e+02 Score=23.32 Aligned_cols=12 Identities=25% Similarity=0.207 Sum_probs=6.0
Q ss_pred HHHHHHHHhhhc
Q 027560 208 QLWYLTRYFQKK 219 (222)
Q Consensus 208 Qv~~lk~fF~~K 219 (222)
|.-+|..+|..+
T Consensus 426 Q~s~l~~~~~~~ 437 (440)
T PRK06798 426 QLKTIKAMTKQK 437 (440)
T ss_pred HHHHHHHHhccc
Confidence 445555555544
No 123
>PHA02844 putative transmembrane protein; Provisional
Probab=22.93 E-value=1.1e+02 Score=20.25 Aligned_cols=26 Identities=19% Similarity=0.252 Sum_probs=16.1
Q ss_pred HHHHHHhHHHHHHHHHHHHHHHHHHH
Q 027560 189 RVAWLSILSLGVCIAVSSLQLWYLTR 214 (222)
Q Consensus 189 rv~~~sil~i~vli~~~~~Qv~~lk~ 214 (222)
.-+++-++-++.++++.++-..|||-
T Consensus 46 ~~~~~~ii~i~~v~~~~~~~flYLK~ 71 (75)
T PHA02844 46 SSTKIWILTIIFVVFATFLTFLYLKA 71 (75)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHhe
Confidence 44444445566666777777777763
No 124
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=22.89 E-value=2.1e+02 Score=23.79 Aligned_cols=36 Identities=14% Similarity=0.173 Sum_probs=22.0
Q ss_pred ccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 027560 147 KIEGVELHLKRLEAQVQSIHENLLFLKHREAEMREV 182 (222)
Q Consensus 147 ~l~~l~~~l~~l~~~l~~I~~eq~~~~~re~~~~~~ 182 (222)
+++.++.++.+|...++....+++-++.|+..+..-
T Consensus 62 ql~~lq~ev~~LrG~~E~~~~~l~~~~~rq~~~y~d 97 (263)
T PRK10803 62 QLSDNQSDIDSLRGQIQENQYQLNQVVERQKQIYLQ 97 (263)
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 455666666666666666666666666665554433
No 125
>PRK10299 PhoPQ regulatory protein; Provisional
Probab=22.88 E-value=71 Score=19.16 Aligned_cols=18 Identities=33% Similarity=0.554 Sum_probs=12.0
Q ss_pred hhhHHHHHHHHHHHhhhc
Q 027560 10 RATVLPLILLLCLACYIC 27 (222)
Q Consensus 10 ~~~~~~~~~~l~~~~~~~ 27 (222)
|.+.+.++++.|+++++.
T Consensus 5 rwiili~iv~~Cl~lyl~ 22 (47)
T PRK10299 5 RWVVLVVVVLACLLLWAQ 22 (47)
T ss_pred eehHHHHHHHHHHHHHHH
Confidence 456666777778877643
No 126
>PF10670 DUF4198: Domain of unknown function (DUF4198)
Probab=22.63 E-value=3.7e+02 Score=20.83 Aligned_cols=18 Identities=22% Similarity=0.405 Sum_probs=12.1
Q ss_pred eeeEEEEeeccceeeeee
Q 027560 95 HGQFAFTTTEAGNYMACF 112 (222)
Q Consensus 95 ~~~f~f~~~~~G~y~iCf 112 (222)
+|.++|+.+.+|.|-+=.
T Consensus 192 ~G~~~~~~~~~G~wli~a 209 (215)
T PF10670_consen 192 NGRATFTLPRPGLWLIRA 209 (215)
T ss_pred CCEEEEecCCCEEEEEEE
Confidence 677777777777775533
No 127
>PF11797 DUF3324: Protein of unknown function C-terminal (DUF3324); InterPro: IPR021759 This family consists of several hypothetical bacterial proteins of unknown function.
Probab=22.01 E-value=2.3e+02 Score=21.05 Aligned_cols=43 Identities=28% Similarity=0.274 Sum_probs=31.2
Q ss_pred eeEEEEECCCC-CeEEeee-----ccceeeEEEEee------ccceeeeeeeeCC
Q 027560 74 TVSAKVTSPYG-NNLHHNE-----NVTHGQFAFTTT------EAGNYMACFWLGS 116 (222)
Q Consensus 74 ~i~v~v~~p~g-~~v~~~~-----~~~~~~f~f~~~------~~G~y~iCf~n~~ 116 (222)
.++..|++..+ +++++.+ -+|...|.|..+ .+|.|.+=+.-.+
T Consensus 62 ~v~a~V~~~~~~k~~~~~~~~~~~mAPNS~f~~~i~~~~~~lk~G~Y~l~~~~~~ 116 (140)
T PF11797_consen 62 TVDAKVTKKGSKKVLYTFKKENMQMAPNSNFNFPIPLGGKKLKPGKYTLKITAKS 116 (140)
T ss_pred EEEEEEEECCCCeEEEEeeccCCEECCCCeEEeEecCCCcCccCCEEEEEEEEEc
Confidence 78888888875 5666543 246788888775 4699999887654
No 128
>PF02927 CelD_N: N-terminal ig-like domain of cellulase; InterPro: IPR004197 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Cellulases (Endoglucanases) 3.2.1.4 from EC catalyse the endohydrolysis of 1,4-beta-D-glucosidic linkages in cellulose. This is the N-terminal ig-like domain of cellulase, enzymes containing this domain belong to family 9 of the glycoside hydrolases (GH9 from CAZY).; GO: 0008810 cellulase activity, 0005975 carbohydrate metabolic process; PDB: 1CLC_A 1WMX_B 2C24_B 1RQ5_A 3K4Z_A 3H7L_B 3RX5_A 3RX8_A 3H2W_A 3RX7_A ....
Probab=21.91 E-value=2.6e+02 Score=18.88 Aligned_cols=12 Identities=25% Similarity=0.171 Sum_probs=7.7
Q ss_pred eccceeeeeeee
Q 027560 103 TEAGNYMACFWL 114 (222)
Q Consensus 103 ~~~G~y~iCf~n 114 (222)
+++|+|.+....
T Consensus 75 ~~~G~Y~i~~~~ 86 (91)
T PF02927_consen 75 TTPGTYYIRVGG 86 (91)
T ss_dssp -S-EEEEEEETT
T ss_pred CCCEEEEEEECC
Confidence 568888888743
No 129
>PF05371 Phage_Coat_Gp8: Phage major coat protein, Gp8; InterPro: IPR008020 The major coat protein in the capsid of filamentous bacteriophage forms a helical assembly of about 7000 identical protomers, with each protomer comprised of 46 amino acids, after the cleavage of the signal peptide. Each protomer forms a slightly curved helix that combines to form a tubular structure that encapsulates the viral DNA [].; PDB: 1IFK_A 2C0W_A 2HI5_A 1FDM_A 1IFJ_A 2C0X_A 1IFI_A 1IFD_A 1MZT_A 1IFL_A ....
Probab=21.76 E-value=1.6e+02 Score=18.16 Aligned_cols=22 Identities=9% Similarity=0.206 Sum_probs=17.2
Q ss_pred HHHHHHHHHHHHHHHHHHHhhh
Q 027560 197 SLGVCIAVSSLQLWYLTRYFQK 218 (222)
Q Consensus 197 ~i~vli~~~~~Qv~~lk~fF~~ 218 (222)
-+++.+..+++=+.+.|+|+.+
T Consensus 30 ~vvv~v~gafigirlFKKf~sk 51 (52)
T PF05371_consen 30 PVVVLVTGAFIGIRLFKKFASK 51 (52)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhcc
Confidence 4567778888889999998764
No 130
>PF14030 DUF4245: Protein of unknown function (DUF4245)
Probab=21.55 E-value=77 Score=24.54 Aligned_cols=22 Identities=14% Similarity=0.078 Sum_probs=18.4
Q ss_pred hhhhhhHHHHHHHHHHHhhhcc
Q 027560 7 SLDRATVLPLILLLCLACYICV 28 (222)
Q Consensus 7 ~~~~~~~~~~~~~l~~~~~~~~ 28 (222)
.++|...|++++++|++.++..
T Consensus 6 ~rdMilSL~vl~~~~~~i~~~~ 27 (169)
T PF14030_consen 6 VRDMILSLAVLVAIVALIVAGV 27 (169)
T ss_pred HHHHHHHHHHHHHHHHHHHHhh
Confidence 4789999999999999985555
No 131
>smart00338 BRLZ basic region leucin zipper.
Probab=21.50 E-value=2.2e+02 Score=17.83 Aligned_cols=35 Identities=26% Similarity=0.399 Sum_probs=21.6
Q ss_pred hccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 027560 144 KKDKIEGVELHLKRLEAQVQSIHENLLFLKHREAE 178 (222)
Q Consensus 144 ~~e~l~~l~~~l~~l~~~l~~I~~eq~~~~~re~~ 178 (222)
++.+++.++.+++.|...-..+..+...+...-..
T Consensus 24 Kk~~~~~Le~~~~~L~~en~~L~~~~~~l~~e~~~ 58 (65)
T smart00338 24 KKAEIEELERKVEQLEAENERLKKEIERLRRELEK 58 (65)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34566777777777777766666665555444333
No 132
>PF13179 DUF4006: Family of unknown function (DUF4006)
Probab=21.47 E-value=88 Score=20.33 Aligned_cols=15 Identities=20% Similarity=0.696 Sum_probs=9.0
Q ss_pred hHHHHHHHHHHHhhh
Q 027560 12 TVLPLILLLCLACYI 26 (222)
Q Consensus 12 ~~~~~~~~l~~~~~~ 26 (222)
-+++++++||.++++
T Consensus 16 ~LIAvvLLLsIl~~l 30 (66)
T PF13179_consen 16 MLIAVVLLLSILAFL 30 (66)
T ss_pred HHHHHHHHHHHHHHH
Confidence 345666667766654
No 133
>PF09889 DUF2116: Uncharacterized protein containing a Zn-ribbon (DUF2116); InterPro: IPR019216 This entry contains various hypothetical prokaryotic proteins whose functions are unknown. They contain a conserved zinc ribbon motif in the N-terminal part and a predicted transmembrane segment in the C-terminal part.
Probab=21.30 E-value=2.3e+02 Score=17.93 Aligned_cols=13 Identities=15% Similarity=0.409 Sum_probs=6.6
Q ss_pred HhHHHHHHHhHHH
Q 027560 186 TNSRVAWLSILSL 198 (222)
Q Consensus 186 t~~rv~~~sil~i 198 (222)
...+.++|+++-+
T Consensus 36 ~~~~~i~~~~~i~ 48 (59)
T PF09889_consen 36 RKTQYIFFGIFIL 48 (59)
T ss_pred HHHHHHHHHHHHH
Confidence 3445555555544
No 134
>PRK14147 heat shock protein GrpE; Provisional
Probab=21.26 E-value=4e+02 Score=20.71 Aligned_cols=39 Identities=15% Similarity=0.132 Sum_probs=23.2
Q ss_pred ccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 027560 147 KIEGVELHLKRLEAQVQSIHENLLFLKHREAEMREVSEV 185 (222)
Q Consensus 147 ~l~~l~~~l~~l~~~l~~I~~eq~~~~~re~~~~~~~es 185 (222)
.++.++.++..+.+.+.....+..-++.|..+.+.....
T Consensus 26 ~l~~l~~e~~elkd~~lR~~Ad~eN~rkR~~kE~e~~~~ 64 (172)
T PRK14147 26 EVESLRSEIALVKADALRERADLENQRKRIARDVEQARK 64 (172)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 355666677777776666666665555555555544433
No 135
>KOG3285 consensus Spindle assembly checkpoint protein [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton]
Probab=21.10 E-value=1.6e+02 Score=23.19 Aligned_cols=49 Identities=4% Similarity=0.033 Sum_probs=25.6
Q ss_pred ceeeeeeeeCCCCCCcccEEEEEEEEecccccchhhhhhccccchHHHHHH
Q 027560 106 GNYMACFWLGSNPQKVADATLGLDWRIGFSAKDWESVAKKDKIEGVELHLK 156 (222)
Q Consensus 106 G~y~iCf~n~~~~~~~~~~~v~f~i~~g~~~~d~~~~a~~e~l~~l~~~l~ 156 (222)
-..-+|+.|..+. .---+..|+++....+.|..++....+.+.++.+++
T Consensus 81 qklvlvI~~~~tg--EvlErWqFnie~~~~~~d~~na~~~k~~~~iq~EIr 129 (203)
T KOG3285|consen 81 QKLVLVITSKHTG--EVLERWQFNIETENTASDGQNATRVKDLKRIQNEIR 129 (203)
T ss_pred ceEEEEEEecccc--cchhheeeeeeeeccccCcccccchhHHHHHHHHHH
Confidence 3456788776542 122377888877655555443333333344444433
No 136
>COG2332 CcmE Cytochrome c-type biogenesis protein CcmE [Posttranslational modification, protein turnover, chaperones]
Probab=20.91 E-value=3.9e+02 Score=20.43 Aligned_cols=72 Identities=18% Similarity=0.146 Sum_probs=36.9
Q ss_pred hhHHHHHHHHHHHhhhcccCeeeeE-EEEEcCCCcceeeEEcCCCcEEEEEEEEeeCC---CCCCCCeeEEEEECCCCCe
Q 027560 11 ATVLPLILLLCLACYICVVPVTEAI-WLQIPSSGTKCVSEEINSNVVVLADYYVIDEA---HPEHPPTVSAKVTSPYGNN 86 (222)
Q Consensus 11 ~~~~~~~~~l~~~~~~~~~~~~~~l-~f~i~~~~~~Cf~e~v~~~~~i~~~y~v~~~~---~~~~~~~i~v~v~~p~g~~ 86 (222)
.+.+++++.||++.++.+-..-+.+ +|+.| ++- -.-+...|+.+.+.=-|..+. .++.. .+.|.++|....+
T Consensus 10 ~~il~~~a~l~~a~~l~Lyal~~ni~~fy~P-sel--~~~~~~~G~rlR~GGlV~~GSv~R~~~~~-~v~F~vtD~~~~v 85 (153)
T COG2332 10 WIILAGLAGLALAVGLVLYALRSNIDYFYTP-SEL--LEGKVETGQRLRLGGLVEAGSVQRDPGSL-KVSFVVTDGNKSV 85 (153)
T ss_pred HHHHHHHHHHHHHHHHHHhhhccCceEEECH-HHh--ccccccCCcEEEEeeeEeeceEEecCCCc-EEEEEEecCCceE
Confidence 4556666777777666665555444 45554 221 112223355554433332221 12333 8888888776554
No 137
>TIGR03044 PS_II_psb27 photosystem II protein Psb27. Members of this family are the Psb27 protein of the cyanobacterial photosynthetic supracomplex, photosystem II. Although most protein components of both cyanobacterial and chloroplast versions of photosystem II are closely related and described together by single model families, this family is strictly bacterial. Some uncharacterized proteins with highly divergent sequences, from Arabidopsis, score between trusted and noise cutoffs for this model but are not at this time assigned as functionally equivalent photosystem II proteins.
Probab=20.79 E-value=71 Score=23.86 Aligned_cols=18 Identities=39% Similarity=0.611 Sum_probs=11.0
Q ss_pred hHHHHHHHHHHHhhhccc
Q 027560 12 TVLPLILLLCLACYICVV 29 (222)
Q Consensus 12 ~~~~~~~~l~~~~~~~~~ 29 (222)
..++++|.+|+.+..|..
T Consensus 10 ~~lal~L~~~l~l~~c~~ 27 (135)
T TIGR03044 10 AALALVLGLCLLLTACSG 27 (135)
T ss_pred HHHHHHHHHHHHHhcccC
Confidence 446666677777655543
No 138
>TIGR03746 conj_TIGR03746 integrating conjugative element protein, PFL_4703 family. Members of this protein family are found occasionally on plasmids such as the Pseudomonas putida TOL plasmid pWWO_p085. Usually, however, they are found on the bacterial main chromosome in regions flanked by markers of conjugative transfer and/or transposition. The function is unknown.
Probab=20.62 E-value=79 Score=25.32 Aligned_cols=30 Identities=17% Similarity=0.354 Sum_probs=18.5
Q ss_pred HHHHHHHHHHHhhhcccCeeeeEEEEEcCC
Q 027560 13 VLPLILLLCLACYICVVPVTEAIWLQIPSS 42 (222)
Q Consensus 13 ~~~~~~~l~~~~~~~~~~~~~~l~f~i~~~ 42 (222)
+..+|+++|++........-..++|+++|.
T Consensus 18 ~~~~L~~i~~~l~~gw~~aP~~ltih~PPD 47 (202)
T TIGR03746 18 AIGLLALILLALWFGWRTAPKDLTIHVPPD 47 (202)
T ss_pred HHHHHHHHHHHHHHHHHhCCCccEEECCCc
Confidence 334445555555555555568889988874
No 139
>PRK14156 heat shock protein GrpE; Provisional
Probab=20.57 E-value=4.2e+02 Score=20.74 Aligned_cols=39 Identities=15% Similarity=0.222 Sum_probs=25.7
Q ss_pred cccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 027560 146 DKIEGVELHLKRLEAQVQSIHENLLFLKHREAEMREVSE 184 (222)
Q Consensus 146 e~l~~l~~~l~~l~~~l~~I~~eq~~~~~re~~~~~~~e 184 (222)
..++.++.++..+.+.+.....+..-++.|..+-+....
T Consensus 34 ~~l~~l~~e~~elkd~~lR~~AEfeN~rKR~~rE~e~~~ 72 (177)
T PRK14156 34 SELELANERADEFENKYLRAHAEMQNIQRRANEERQQLQ 72 (177)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 346677777888887777777776666666555544433
No 140
>PRK13211 N-acetylglucosamine-binding protein A; Reviewed
Probab=20.52 E-value=6.7e+02 Score=23.04 Aligned_cols=44 Identities=23% Similarity=0.249 Sum_probs=30.0
Q ss_pred eeEEEEECCCCCeEEeee-ccceeeEEEEe----eccceeeeeeeeCCC
Q 027560 74 TVSAKVTSPYGNNLHHNE-NVTHGQFAFTT----TEAGNYMACFWLGSN 117 (222)
Q Consensus 74 ~i~v~v~~p~g~~v~~~~-~~~~~~f~f~~----~~~G~y~iCf~n~~~ 117 (222)
.+.++|+|..|+.+.... ....+..+++. .+.|.|.+=.....+
T Consensus 342 ~vta~V~d~~g~~~~~~~~~v~d~s~~vtL~Ls~~~AG~y~Lvv~~t~~ 390 (478)
T PRK13211 342 NVEATVYNHDGEALGSKSQTVNDGSQSVSLDLSKLKAGHHMLVVKAKPK 390 (478)
T ss_pred EEEEEEEcCCCCeeeeeeEEecCCceeEEEecccCCCceEEEEEEEEeC
Confidence 899999999999876543 22233344443 368999999976544
No 141
>PF10805 DUF2730: Protein of unknown function (DUF2730); InterPro: IPR020269 This entry represents a family of various hypothetical proteins. The proteins, which include HI1498 and Gp25, from phage Mu, are currently uncharacterised.
Probab=20.49 E-value=92 Score=22.09 Aligned_cols=28 Identities=21% Similarity=0.229 Sum_probs=22.0
Q ss_pred HHHHhHHHHHHHHHHHHHHHHHHHHhhh
Q 027560 191 AWLSILSLGVCIAVSSLQLWYLTRYFQK 218 (222)
Q Consensus 191 ~~~sil~i~vli~~~~~Qv~~lk~fF~~ 218 (222)
.+|+++..++.++.++++.+.=++|-++
T Consensus 7 ~~w~ii~a~~~~~~~~~~~~l~~~~a~~ 34 (106)
T PF10805_consen 7 KNWGIIWAVFGIAGGIFWLWLRRTYAKR 34 (106)
T ss_pred hCcHHHHHHHHHHHHHHHHHHHHhhccH
Confidence 4789988888888888888877766543
Done!