BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 027562
(222 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1N11|A Chain A, D34 Region Of Human Ankyrin-R And Linker
Length = 437
Score = 70.1 bits (170), Expect = 9e-13, Method: Compositional matrix adjust.
Identities = 56/184 (30%), Positives = 84/184 (45%), Gaps = 25/184 (13%)
Query: 29 LTAKTKNTILHVNIRSKESENASTKFVEEILEKCPLLLLQVNAKGETPLHVAAKFGHSDI 88
L +T LH+ R E +E + C + KG TPLHVAAK+G +
Sbjct: 108 LATTAGHTPLHIAAREGHVETVLALLEKEASQAC------MTKKGFTPLHVAAKYGKVRV 161
Query: 89 VRVLVERAKLLQHENEELESGIRTARHMIRMTNKEKNTALHEAVCHQNVDVVEILTKEDP 148
+L+ER H N ++G+ T LH AV H N+D+V++L
Sbjct: 162 AELLLERDA---HPNAAGKNGL---------------TPLHVAVHHNNLDIVKLLLPRG- 202
Query: 149 DYPYSANNDGKTPLYMAADYRSSDMVLALLENSTSASHEGPNGKTALHAAAMKSYFGKFS 208
P+S +G TPL++AA ++ +LL+ SA+ E G T LH AA + + +
Sbjct: 203 GSPHSPAWNGYTPLHIAAKQNQVEVARSLLQYGGSANAESVQGVTPLHLAAQEGHAEMVA 262
Query: 209 YTLS 212
LS
Sbjct: 263 LLLS 266
Score = 59.7 bits (143), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 63/198 (31%), Positives = 87/198 (43%), Gaps = 25/198 (12%)
Query: 5 LFKAAAAGNLEPFKDIAREVIKRLLTAKTKNTILHVNIRSKESENASTKFVEEILEKCPL 64
L AA AG+ E K + + K AK T LH R T V+ +LE
Sbjct: 51 LHMAARAGHTEVAKYLLQNKAKVNAKAKDDQTPLHCAARI-----GHTNMVKLLLENNAN 105
Query: 65 LLLQVNAKGETPLHVAAKFGHSDIVRVLVERAKLLQHENEELESGIRTARHMIRMTNKEK 124
L A G TPLH+AA+ GH + V L+E+ E T K+
Sbjct: 106 PNLATTA-GHTPLHIAAREGHVETVLALLEK---------EASQACMT---------KKG 146
Query: 125 NTALHEAVCHQNVDVVEILTKEDPDYPYSANNDGKTPLYMAADYRSSDMVLALLENSTSA 184
T LH A + V V E+L + D +P +A +G TPL++A + + D+V LL S
Sbjct: 147 FTPLHVAAKYGKVRVAELLLERD-AHPNAAGKNGLTPLHVAVHHNNLDIVKLLLPRGGSP 205
Query: 185 SHEGPNGKTALHAAAMKS 202
NG T LH AA ++
Sbjct: 206 HSPAWNGYTPLHIAAKQN 223
Score = 52.0 bits (123), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 42/131 (32%), Positives = 65/131 (49%), Gaps = 21/131 (16%)
Query: 70 NAKGETPLHVAAKFGHSDIVRVLVE-RAKLLQHENEELESGIRTARHMIRMTNKEKNTAL 128
N K ETPLH+AA+ GH+++ + L++ +AK + K+ T L
Sbjct: 44 NVKVETPLHMAARAGHTEVAKYLLQNKAK-------------------VNAKAKDDQTPL 84
Query: 129 HEAVCHQNVDVVEILTKEDPDYPYSANNDGKTPLYMAADYRSSDMVLALLENSTSASHEG 188
H A + ++V++L + + + P A G TPL++AA + VLALLE S +
Sbjct: 85 HCAARIGHTNMVKLLLENNAN-PNLATTAGHTPLHIAAREGHVETVLALLEKEASQACMT 143
Query: 189 PNGKTALHAAA 199
G T LH AA
Sbjct: 144 KKGFTPLHVAA 154
Score = 47.8 bits (112), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 40/141 (28%), Positives = 62/141 (43%), Gaps = 22/141 (15%)
Query: 70 NAKGETPLHVAAKFGHSDIVRVLVERAKLLQHENEELESGIRTARHMIRMTNKEKNTALH 129
N G TPLH+ A+ GH + VL++ G+ M+ T + T LH
Sbjct: 275 NKSGLTPLHLVAQEGHVPVADVLIKH-------------GV-----MVDATTRMGYTPLH 316
Query: 130 EAVCHQNVDVVEILTKEDPDYPYSANNDGKTPLYMAADYRSSDMVLALLENSTSASHEGP 189
A + N+ +V+ L + D + G +PL+ AA +D+V LL+N S +
Sbjct: 317 VASHYGNIKLVKFLLQHQADV-NAKTKLGYSPLHQAAQQGHTDIVTLLLKNGASPNEVSS 375
Query: 190 NGKTALHAAAMKSYFGKFSYT 210
+G T L A+ G S T
Sbjct: 376 DGTTPL---AIAKRLGYISVT 393
Score = 44.3 bits (103), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 39/130 (30%), Positives = 59/130 (45%), Gaps = 19/130 (14%)
Query: 75 TPLHVAAKFGHSDIVRVLVERAKLLQHENEELESGIRTARHMIRMTNKEKNTALHEAVCH 134
TPLHVA+ GH IV+ L++R N ++E T LH A
Sbjct: 16 TPLHVASFMGHLPIVKNLLQRGASPNVSNVKVE------------------TPLHMAARA 57
Query: 135 QNVDVVEILTKEDPDYPYSANNDGKTPLYMAADYRSSDMVLALLENSTSASHEGPNGKTA 194
+ +V + L + A +D +TPL+ AA ++MV LLEN+ + + G T
Sbjct: 58 GHTEVAKYLLQNKAKVNAKAKDD-QTPLHCAARIGHTNMVKLLLENNANPNLATTAGHTP 116
Query: 195 LHAAAMKSYF 204
LH AA + +
Sbjct: 117 LHIAAREGHV 126
Score = 42.4 bits (98), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 37/131 (28%), Positives = 61/131 (46%), Gaps = 21/131 (16%)
Query: 55 VEEILEKCPLLLLQVNAKGETPLHVAAKFGHSDIVRVLVERAKLLQHENEELESGIRTAR 114
V ++L K +++ G TPLHVA+ +G+ +V+ LLQH+ +
Sbjct: 293 VADVLIKHGVMVDATTRMGYTPLHVASHYGNIKLVKF------LLQHQAD---------- 336
Query: 115 HMIRMTNKEKNTALHEAVCHQNVDVVEILTKEDPDYPYSANNDGKTPLYMAA--DYRSSD 172
+ K + LH+A + D+V +L K P ++DG TPL +A Y S
Sbjct: 337 --VNAKTKLGYSPLHQAAQQGHTDIVTLLLKNGAS-PNEVSSDGTTPLAIAKRLGYISVT 393
Query: 173 MVLALLENSTS 183
VL ++ + TS
Sbjct: 394 DVLKVVTDETS 404
Score = 41.2 bits (95), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 38/145 (26%), Positives = 66/145 (45%), Gaps = 19/145 (13%)
Query: 72 KGETPLHVAAKFGHSDIVRVLVERAKLLQHENEELESGIRTARHMIRMTNKEKNTALHEA 131
+G TPLH+AA+ GH+++V +L+ + +G + NK T LH
Sbjct: 244 QGVTPLHLAAQEGHAEMVALLLSKQA----------NG--------NLGNKSGLTPLHLV 285
Query: 132 VCHQNVDVVEILTKEDPDYPYSANNDGKTPLYMAADYRSSDMVLALLENSTSASHEGPNG 191
+V V ++L K + G TPL++A+ Y + +V LL++ + + G
Sbjct: 286 AQEGHVPVADVLIKHGVMVD-ATTRMGYTPLHVASHYGNIKLVKFLLQHQADVNAKTKLG 344
Query: 192 KTALHAAAMKSYFGKFSYTLSVGIS 216
+ LH AA + + + L G S
Sbjct: 345 YSPLHQAAQQGHTDIVTLLLKNGAS 369
>pdb|1N0R|A Chain A, 4ank: A Designed Ankyrin Repeat Protein With Four
Identical Consensus Repeats
Length = 126
Score = 57.8 bits (138), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 42/142 (29%), Positives = 70/142 (49%), Gaps = 19/142 (13%)
Query: 73 GETPLHVAAKFGHSDIVRVLVERAKLLQHENEELESGIRTARHMIRMTNKEKNTALHEAV 132
G TPLH+AA+ GH ++V++L LE+G + +K T LH A
Sbjct: 2 GRTPLHLAARNGHLEVVKLL-------------LEAGAD-----VNAKDKNGRTPLHLAA 43
Query: 133 CHQNVDVVEILTKEDPDYPYSANNDGKTPLYMAADYRSSDMVLALLENSTSASHEGPNGK 192
+ +++VV++L + D + + +G+TPL++AA ++V LLE + + NG+
Sbjct: 44 RNGHLEVVKLLLEAGADV-NAKDKNGRTPLHLAARNGHLEVVKLLLEAGADVNAKDKNGR 102
Query: 193 TALHAAAMKSYFGKFSYTLSVG 214
T LH AA + L G
Sbjct: 103 TPLHLAARNGHLEVVKLLLEAG 124
Score = 42.4 bits (98), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 27/92 (29%), Positives = 47/92 (51%), Gaps = 1/92 (1%)
Query: 126 TALHEAVCHQNVDVVEILTKEDPDYPYSANNDGKTPLYMAADYRSSDMVLALLENSTSAS 185
T LH A + +++VV++L + D + + +G+TPL++AA ++V LLE +
Sbjct: 4 TPLHLAARNGHLEVVKLLLEAGADV-NAKDKNGRTPLHLAARNGHLEVVKLLLEAGADVN 62
Query: 186 HEGPNGKTALHAAAMKSYFGKFSYTLSVGISI 217
+ NG+T LH AA + L G +
Sbjct: 63 AKDKNGRTPLHLAARNGHLEVVKLLLEAGADV 94
Score = 35.4 bits (80), Expect = 0.027, Method: Compositional matrix adjust.
Identities = 19/61 (31%), Positives = 30/61 (49%)
Query: 157 DGKTPLYMAADYRSSDMVLALLENSTSASHEGPNGKTALHAAAMKSYFGKFSYTLSVGIS 216
+G+TPL++AA ++V LLE + + NG+T LH AA + L G
Sbjct: 1 NGRTPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGAD 60
Query: 217 I 217
+
Sbjct: 61 V 61
>pdb|4GMR|A Chain A, Crystal Structure Of Engineered Protein. Northeast
Structural Genomics Consortium Target Or266.
pdb|4GMR|B Chain B, Crystal Structure Of Engineered Protein. Northeast
Structural Genomics Consortium Target Or266
Length = 169
Score = 53.1 bits (126), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 43/155 (27%), Positives = 76/155 (49%), Gaps = 26/155 (16%)
Query: 47 SENASTKFVEEILEKCPLLLLQVNA---KGETPLHVAAKFGHSDIVRVLVERAKLLQHEN 103
+EN + V+++LE VNA G+TPLH+AA+ GH ++V++L+ +
Sbjct: 12 AENGNKDRVKDLLENGA----DVNASDSDGKTPLHLAAENGHKEVVKLLLSQGA------ 61
Query: 104 EELESGIRTARHMIRMTNKEKNTALHEAVCHQNVDVVEILTKEDPDYPYSANNDGKTPLY 163
+ + T LH A + + +VV++L + D P + ++DGKTPL+
Sbjct: 62 ------------DPNAKDSDGKTPLHLAAENGHKEVVKLLLSQGAD-PNAKDSDGKTPLH 108
Query: 164 MAADYRSSDMVLALLENSTSASHEGPNGKTALHAA 198
+AA+ ++V LL + +G+T L A
Sbjct: 109 LAAENGHKEVVKLLLSQGADPNTSDSDGRTPLDLA 143
Score = 45.8 bits (107), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 30/98 (30%), Positives = 52/98 (53%), Gaps = 1/98 (1%)
Query: 117 IRMTNKEKNTALHEAVCHQNVDVVEILTKEDPDYPYSANNDGKTPLYMAADYRSSDMVLA 176
+ ++ + T LH A + + +VV++L + D P + ++DGKTPL++AA+ ++V
Sbjct: 30 VNASDSDGKTPLHLAAENGHKEVVKLLLSQGAD-PNAKDSDGKTPLHLAAENGHKEVVKL 88
Query: 177 LLENSTSASHEGPNGKTALHAAAMKSYFGKFSYTLSVG 214
LL + + +GKT LH AA + LS G
Sbjct: 89 LLSQGADPNAKDSDGKTPLHLAAENGHKEVVKLLLSQG 126
Score = 28.1 bits (61), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 19/53 (35%), Positives = 24/53 (45%)
Query: 162 LYMAADYRSSDMVLALLENSTSASHEGPNGKTALHAAAMKSYFGKFSYTLSVG 214
L AA+ + D V LLEN + +GKT LH AA + LS G
Sbjct: 8 LIEAAENGNKDRVKDLLENGADVNASDSDGKTPLHLAAENGHKEVVKLLLSQG 60
>pdb|1MJ0|A Chain A, Sank E3_5: An Artificial Ankyrin Repeat Protein
Length = 166
Score = 52.4 bits (124), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 41/123 (33%), Positives = 62/123 (50%), Gaps = 19/123 (15%)
Query: 73 GETPLHVAAKFGHSDIVRVLVERAKLLQHENEELESGIRTARHMIRMTNKEKNTALHEAV 132
G TPLH+AA GH +IV VL++ + N +GI T LH A
Sbjct: 47 GYTPLHLAASNGHLEIVEVLLKNGADV---NASDLTGI---------------TPLHLAA 88
Query: 133 CHQNVDVVEILTKEDPDYPYSANNDGKTPLYMAADYRSSDMVLALLENSTSASHEGPNGK 192
++++VE+L K D + +NDG TPL++AA Y ++V LL++ + + GK
Sbjct: 89 ATGHLEIVEVLLKHGADVN-AYDNDGHTPLHLAAKYGHLEIVEVLLKHGADVNAQDKFGK 147
Query: 193 TAL 195
TA
Sbjct: 148 TAF 150
Score = 37.0 bits (84), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 33/125 (26%), Positives = 55/125 (44%), Gaps = 19/125 (15%)
Query: 80 AAKFGHSDIVRVLVERAKLLQHENEELESGIRTARHMIRMTNKEKNTALHEAVCHQNVDV 139
AA+ G D VR+L+ + T+ + T LH A + ++++
Sbjct: 21 AARAGQDDEVRILMANGA------------------DVNATDNDGYTPLHLAASNGHLEI 62
Query: 140 VEILTKEDPDYPYSANNDGKTPLYMAADYRSSDMVLALLENSTSASHEGPNGKTALHAAA 199
VE+L K D S + G TPL++AA ++V LL++ + +G T LH AA
Sbjct: 63 VEVLLKNGADVNAS-DLTGITPLHLAAATGHLEIVEVLLKHGADVNAYDNDGHTPLHLAA 121
Query: 200 MKSYF 204
+
Sbjct: 122 KYGHL 126
>pdb|3B7B|A Chain A, Euhmt1 (Glp) Ankyrin Repeat Domain (Structure 1)
pdb|3B7B|B Chain B, Euhmt1 (Glp) Ankyrin Repeat Domain (Structure 1)
pdb|3B95|A Chain A, Euhmt1 (Glp) Ankyrin Repeat Domain (Structure 2)
pdb|3B95|B Chain B, Euhmt1 (Glp) Ankyrin Repeat Domain (Structure 2)
Length = 237
Score = 52.4 bits (124), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 39/149 (26%), Positives = 71/149 (47%), Gaps = 17/149 (11%)
Query: 70 NAKGETPLHVAAKFGHSDIVRVLVERAKL----------------LQHENEELESGIRTA 113
+A+G T LH+AAK GH ++V+ L+ ++ ++++ +L + +
Sbjct: 74 DAEGSTCLHLAAKKGHYEVVQYLLSNGQMDVNCQDDGGWTPMIWATEYKHVDLVKLLLSK 133
Query: 114 RHMIRMTNKEKNTALHEAVCHQNVDVVEILTKEDPDYPYSANNDGKTPLYMAADYRSSDM 173
I + + E+N LH A VD+ EIL D ++ N G +PL++AA D
Sbjct: 134 GSDINIRDNEENICLHWAAFSGCVDIAEILLAAKCDL-HAVNIHGDSPLHIAARENRYDC 192
Query: 174 VLALLENSTSASHEGPNGKTALHAAAMKS 202
V+ L + + + G+T L A++ S
Sbjct: 193 VVLFLSRDSDVTLKNKEGETPLQCASLNS 221
Score = 43.1 bits (100), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 39/141 (27%), Positives = 62/141 (43%), Gaps = 15/141 (10%)
Query: 75 TPLHVAAKFGHSDIVRVLVE------------RAKLLQH-ENEELESG--IRTARHMIRM 119
+PLH AA+ GH DI +LV+ R L++ EN LE+ + A ++
Sbjct: 13 SPLHAAAEAGHVDICHMLVQAGANIDTCSEDQRTPLMEAAENNHLEAVKYLIKAGALVDP 72
Query: 120 TNKEKNTALHEAVCHQNVDVVEILTKEDPDYPYSANNDGKTPLYMAADYRSSDMVLALLE 179
+ E +T LH A + +VV+ L ++ G TP+ A +Y+ D+V LL
Sbjct: 73 KDAEGSTCLHLAAKKGHYEVVQYLLSNGQMDVNCQDDGGWTPMIWATEYKHVDLVKLLLS 132
Query: 180 NSTSASHEGPNGKTALHAAAM 200
+ + LH AA
Sbjct: 133 KGSDINIRDNEENICLHWAAF 153
Score = 38.9 bits (89), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 29/101 (28%), Positives = 48/101 (47%), Gaps = 2/101 (1%)
Query: 115 HM-IRMTNKEKNTALHEAVCHQNVDVVEILTKEDPDYPYSANNDGKTPLYMAADYRSSDM 173
HM +M ++ K + LH A +VD+ +L + + + + D +TPL AA+ +
Sbjct: 1 HMNFKMEHQNKRSPLHAAAEAGHVDICHMLVQAGANID-TCSEDQRTPLMEAAENNHLEA 59
Query: 174 VLALLENSTSASHEGPNGKTALHAAAMKSYFGKFSYTLSVG 214
V L++ + G T LH AA K ++ Y LS G
Sbjct: 60 VKYLIKAGALVDPKDAEGSTCLHLAAKKGHYEVVQYLLSNG 100
Score = 34.7 bits (78), Expect = 0.042, Method: Compositional matrix adjust.
Identities = 28/99 (28%), Positives = 48/99 (48%), Gaps = 14/99 (14%)
Query: 23 EVIKRLLTAKTKNTILHVNIRSKESENASTKF--------VEEILEKCPLLLLQVNAKGE 74
+++K LL+ + +NIR E EN + + EIL L VN G+
Sbjct: 125 DLVKLLLSKGSD-----INIRDNE-ENICLHWAAFSGCVDIAEILLAAKCDLHAVNIHGD 178
Query: 75 TPLHVAAKFGHSDIVRVLVERAKLLQHENEELESGIRTA 113
+PLH+AA+ D V + + R + +N+E E+ ++ A
Sbjct: 179 SPLHIAARENRYDCVVLFLSRDSDVTLKNKEGETPLQCA 217
>pdb|3NOC|D Chain D, Designed Ankyrin Repeat Protein (Darpin) Binders To Acrb:
Plasticity Of The Interface
pdb|3NOC|E Chain E, Designed Ankyrin Repeat Protein (Darpin) Binders To Acrb:
Plasticity Of The Interface
Length = 169
Score = 51.2 bits (121), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 43/131 (32%), Positives = 65/131 (49%), Gaps = 22/131 (16%)
Query: 68 QVNAK---GETPLHVAAKFGHSDIVRVLVERAKLLQHENEELESGIRTARHMIRMTNKEK 124
VNA+ G TPLH+AA FGH +IV VL++ + N + G+
Sbjct: 39 DVNARDFTGWTPLHLAAHFGHLEIVEVLLKNGADV---NAKDSLGV-------------- 81
Query: 125 NTALHEAVCHQNVDVVEILTKEDPDYPYSANNDGKTPLYMAADYRSSDMVLALLENSTSA 184
T LH A ++++VE+L K D S ++ G TPL++AA ++V LL+N
Sbjct: 82 -TPLHLAARRGHLEIVEVLLKNGADVNAS-DSHGFTPLHLAAKRGHLEIVEVLLKNGADV 139
Query: 185 SHEGPNGKTAL 195
+ + GKTA
Sbjct: 140 NAQDKFGKTAF 150
Score = 37.0 bits (84), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 25/79 (31%), Positives = 42/79 (53%), Gaps = 1/79 (1%)
Query: 126 TALHEAVCHQNVDVVEILTKEDPDYPYSANNDGKTPLYMAADYRSSDMVLALLENSTSAS 185
T LH A ++++VE+L K D + ++ G TPL++AA ++V LL+N +
Sbjct: 49 TPLHLAAHFGHLEIVEVLLKNGADV-NAKDSLGVTPLHLAARRGHLEIVEVLLKNGADVN 107
Query: 186 HEGPNGKTALHAAAMKSYF 204
+G T LH AA + +
Sbjct: 108 ASDSHGFTPLHLAAKRGHL 126
Score = 31.2 bits (69), Expect = 0.51, Method: Compositional matrix adjust.
Identities = 16/47 (34%), Positives = 26/47 (55%)
Query: 158 GKTPLYMAADYRSSDMVLALLENSTSASHEGPNGKTALHAAAMKSYF 204
G TPL++AA + ++V LL+N + + G T LH AA + +
Sbjct: 47 GWTPLHLAAHFGHLEIVEVLLKNGADVNAKDSLGVTPLHLAARRGHL 93
>pdb|2QYJ|A Chain A, Crystal Structure Of A Designed Full Consensus Ankyrin
Length = 166
Score = 50.4 bits (119), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 42/131 (32%), Positives = 64/131 (48%), Gaps = 22/131 (16%)
Query: 68 QVNAK---GETPLHVAAKFGHSDIVRVLVERAKLLQHENEELESGIRTARHMIRMTNKEK 124
VNAK G TPLH+AA+ GH +IV VL++ A + +K+
Sbjct: 39 DVNAKDKDGYTPLHLAAREGHLEIVEVLLK------------------AGADVNAKDKDG 80
Query: 125 NTALHEAVCHQNVDVVEILTKEDPDYPYSANNDGKTPLYMAADYRSSDMVLALLENSTSA 184
T LH A ++++VE+L K D + + DG TPL++AA ++V LL+
Sbjct: 81 YTPLHLAAREGHLEIVEVLLKAGADVN-AKDKDGYTPLHLAAREGHLEIVEVLLKAGADV 139
Query: 185 SHEGPNGKTAL 195
+ + GKTA
Sbjct: 140 NAQDKFGKTAF 150
Score = 41.2 bits (95), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 35/138 (25%), Positives = 59/138 (42%), Gaps = 19/138 (13%)
Query: 80 AAKFGHSDIVRVLVERAKLLQHENEELESGIRTARHMIRMTNKEKNTALHEAVCHQNVDV 139
AA+ G D VR+L+ + +K+ T LH A ++++
Sbjct: 21 AARAGQDDEVRILMANGA------------------DVNAKDKDGYTPLHLAAREGHLEI 62
Query: 140 VEILTKEDPDYPYSANNDGKTPLYMAADYRSSDMVLALLENSTSASHEGPNGKTALHAAA 199
VE+L K D + + DG TPL++AA ++V LL+ + + +G T LH AA
Sbjct: 63 VEVLLKAGADVN-AKDKDGYTPLHLAAREGHLEIVEVLLKAGADVNAKDKDGYTPLHLAA 121
Query: 200 MKSYFGKFSYTLSVGISI 217
+ + L G +
Sbjct: 122 REGHLEIVEVLLKAGADV 139
Score = 38.5 bits (88), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 36/120 (30%), Positives = 56/120 (46%), Gaps = 22/120 (18%)
Query: 57 EILEKCPLLLLQVNAK---GETPLHVAAKFGHSDIVRVLVERAKLLQHENEELESGIRTA 113
EI+E VNAK G TPLH+AA+ GH +IV VL++ A
Sbjct: 61 EIVEVLLKAGADVNAKDKDGYTPLHLAAREGHLEIVEVLLK------------------A 102
Query: 114 RHMIRMTNKEKNTALHEAVCHQNVDVVEILTKEDPDYPYSANNDGKTPLYMAADYRSSDM 173
+ +K+ T LH A ++++VE+L K D + + GKT ++ D + D+
Sbjct: 103 GADVNAKDKDGYTPLHLAAREGHLEIVEVLLKAGADVN-AQDKFGKTAFDISIDNGNEDL 161
>pdb|4F6R|D Chain D, Tubulin:stathmin-Like Domain Complex
Length = 169
Score = 50.4 bits (119), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 42/131 (32%), Positives = 66/131 (50%), Gaps = 22/131 (16%)
Query: 68 QVNAK---GETPLHVAAKFGHSDIVRVLVERAKLLQHENEELESGIRTARHMIRMTNKEK 124
VNA+ G+TPLH+AA GH +IV V LL+H + + +K
Sbjct: 39 DVNAEDDSGKTPLHLAAIKGHLEIVEV------LLKHGAD------------VNAADKMG 80
Query: 125 NTALHEAVCHQNVDVVEILTKEDPDYPYSANNDGKTPLYMAADYRSSDMVLALLENSTSA 184
+T LH A + ++++VE+L K D + + G TPL++AAD ++V LL+
Sbjct: 81 DTPLHLAALYGHLEIVEVLLKNGADVN-ATDTYGFTPLHLAADAGHLEIVEVLLKYGADV 139
Query: 185 SHEGPNGKTAL 195
+ + GKTA
Sbjct: 140 NAQDKFGKTAF 150
Score = 42.4 bits (98), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 40/138 (28%), Positives = 60/138 (43%), Gaps = 19/138 (13%)
Query: 80 AAKFGHSDIVRVLVERAKLLQHENEELESGIRTARHMIRMTNKEKNTALHEAVCHQNVDV 139
AA+ G D VR+L+ + N E +SG T LH A ++++
Sbjct: 21 AARAGQDDEVRILMANGADV---NAEDDSG---------------KTPLHLAAIKGHLEI 62
Query: 140 VEILTKEDPDYPYSANNDGKTPLYMAADYRSSDMVLALLENSTSASHEGPNGKTALHAAA 199
VE+L K D +A+ G TPL++AA Y ++V LL+N + G T LH AA
Sbjct: 63 VEVLLKHGADVN-AADKMGDTPLHLAALYGHLEIVEVLLKNGADVNATDTYGFTPLHLAA 121
Query: 200 MKSYFGKFSYTLSVGISI 217
+ L G +
Sbjct: 122 DAGHLEIVEVLLKYGADV 139
Score = 35.8 bits (81), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 28/101 (27%), Positives = 47/101 (46%), Gaps = 19/101 (18%)
Query: 73 GETPLHVAAKFGHSDIVRVLVERAKLLQHENEELESGIRTARHMIRMTNKEKNTALHEAV 132
G+TPLH+AA +GH +IV VL++ + T+ T LH A
Sbjct: 80 GDTPLHLAALYGHLEIVEVLLKNGA------------------DVNATDTYGFTPLHLAA 121
Query: 133 CHQNVDVVEILTKEDPDYPYSANNDGKTPLYMAADYRSSDM 173
++++VE+L K D + + GKT ++ D + D+
Sbjct: 122 DAGHLEIVEVLLKYGADVN-AQDKFGKTAFDISIDNGNEDL 161
Score = 27.3 bits (59), Expect = 6.9, Method: Compositional matrix adjust.
Identities = 16/43 (37%), Positives = 21/43 (48%)
Query: 162 LYMAADYRSSDMVLALLENSTSASHEGPNGKTALHAAAMKSYF 204
L AA D V L+ N + E +GKT LH AA+K +
Sbjct: 18 LLEAARAGQDDEVRILMANGADVNAEDDSGKTPLHLAAIKGHL 60
>pdb|3NOG|D Chain D, Designed Ankyrin Repeat Protein (Darpin) Binders To Acrb:
Plasticity Of The Interface
pdb|3NOG|E Chain E, Designed Ankyrin Repeat Protein (Darpin) Binders To Acrb:
Plasticity Of The Interface
Length = 169
Score = 50.1 bits (118), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 40/123 (32%), Positives = 62/123 (50%), Gaps = 19/123 (15%)
Query: 73 GETPLHVAAKFGHSDIVRVLVERAKLLQHENEELESGIRTARHMIRMTNKEKNTALHEAV 132
G TPLH+AA FGH +IV VL++ + N + G+ T LH A
Sbjct: 47 GWTPLHLAAYFGHLEIVEVLLKNGADV---NADDSLGV---------------TPLHLAA 88
Query: 133 CHQNVDVVEILTKEDPDYPYSANNDGKTPLYMAADYRSSDMVLALLENSTSASHEGPNGK 192
+++VVE+L K D + +N G TPL++AA+ ++V LL++ + + GK
Sbjct: 89 DRGHLEVVEVLLKNGADVNANDHN-GFTPLHLAANIGHLEIVEVLLKHGADVNAQDKFGK 147
Query: 193 TAL 195
TA
Sbjct: 148 TAF 150
Score = 39.7 bits (91), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 35/120 (29%), Positives = 56/120 (46%), Gaps = 19/120 (15%)
Query: 80 AAKFGHSDIVRVLVERAKLLQHENEELESGIRTARHMIRMTNKEKNTALHEAVCHQNVDV 139
AA+ G D VR+L+ + + + H+ T LH A ++++
Sbjct: 21 AARAGQDDEVRILMANG-----------ADVNASDHV-------GWTPLHLAAYFGHLEI 62
Query: 140 VEILTKEDPDYPYSANNDGKTPLYMAADYRSSDMVLALLENSTSASHEGPNGKTALHAAA 199
VE+L K D + ++ G TPL++AAD ++V LL+N + NG T LH AA
Sbjct: 63 VEVLLKNGADVN-ADDSLGVTPLHLAADRGHLEVVEVLLKNGADVNANDHNGFTPLHLAA 121
Score = 31.2 bits (69), Expect = 0.45, Method: Compositional matrix adjust.
Identities = 22/67 (32%), Positives = 34/67 (50%), Gaps = 1/67 (1%)
Query: 138 DVVEILTKEDPDYPYSANNDGKTPLYMAADYRSSDMVLALLENSTSASHEGPNGKTALHA 197
D V IL D S ++ G TPL++AA + ++V LL+N + + G T LH
Sbjct: 28 DEVRILMANGADVNAS-DHVGWTPLHLAAYFGHLEIVEVLLKNGADVNADDSLGVTPLHL 86
Query: 198 AAMKSYF 204
AA + +
Sbjct: 87 AADRGHL 93
>pdb|2BKG|A Chain A, Crystal Structure Of E3_19 An Designed Ankyrin Repeat
Protein
pdb|2BKG|B Chain B, Crystal Structure Of E3_19 An Designed Ankyrin Repeat
Protein
Length = 166
Score = 49.7 bits (117), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 41/134 (30%), Positives = 63/134 (47%), Gaps = 28/134 (20%)
Query: 68 QVNAK---GETPLHVAAKFGHSDIVRVLVERAKLLQHENEELESGIRTARHMIRMTNKEK 124
VNA+ G+TPLH+AA+ GH +IV VL++ + +
Sbjct: 39 DVNAEDTYGDTPLHLAARVGHLEIVEVLLKNGA------------------DVNALDFSG 80
Query: 125 NTALHEAVCHQNVDVVEILTKEDPDYPYSANND---GKTPLYMAADYRSSDMVLALLENS 181
+T LH A ++++VE+L K Y N D G TPL++AAD ++V LL+
Sbjct: 81 STPLHLAAKRGHLEIVEVLLK----YGADVNADDTIGSTPLHLAADTGHLEIVEVLLKYG 136
Query: 182 TSASHEGPNGKTAL 195
+ + GKTA
Sbjct: 137 ADVNAQDKFGKTAF 150
Score = 33.9 bits (76), Expect = 0.072, Method: Compositional matrix adjust.
Identities = 36/139 (25%), Positives = 61/139 (43%), Gaps = 25/139 (17%)
Query: 35 NTILHVNIRSKESENASTKFVEEILEKCPLLLLQVNAKGETPLHVAAKFGHSDIVRVLVE 94
+T LH+ R E + E+L K + ++ G TPLH+AAK GH +IV VL++
Sbjct: 48 DTPLHLAARVGHLE------IVEVLLKNGADVNALDFSGSTPLHLAAKRGHLEIVEVLLK 101
Query: 95 RAKLLQHENEELESGIRTARHMIRMTNKEKNTALHEAVCHQNVDVVEILTKEDPDYPYSA 154
+ + +T LH A ++++VE+L K D +
Sbjct: 102 YGA------------------DVNADDTIGSTPLHLAADTGHLEIVEVLLKYGADVN-AQ 142
Query: 155 NNDGKTPLYMAADYRSSDM 173
+ GKT ++ D + D+
Sbjct: 143 DKFGKTAFDISIDNGNEDL 161
Score = 32.7 bits (73), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 34/138 (24%), Positives = 56/138 (40%), Gaps = 19/138 (13%)
Query: 80 AAKFGHSDIVRVLVERAKLLQHENEELESGIRTARHMIRMTNKEKNTALHEAVCHQNVDV 139
AA+ G D VR+L+ + E+ +T LH A ++++
Sbjct: 21 AARAGQDDEVRILMANGADVNAED------------------TYGDTPLHLAARVGHLEI 62
Query: 140 VEILTKEDPDYPYSANNDGKTPLYMAADYRSSDMVLALLENSTSASHEGPNGKTALHAAA 199
VE+L K D + + G TPL++AA ++V LL+ + + G T LH AA
Sbjct: 63 VEVLLKNGADVN-ALDFSGSTPLHLAAKRGHLEIVEVLLKYGADVNADDTIGSTPLHLAA 121
Query: 200 MKSYFGKFSYTLSVGISI 217
+ L G +
Sbjct: 122 DTGHLEIVEVLLKYGADV 139
>pdb|1SVX|A Chain A, Crystal Structure Of A Designed Selected Ankyrin Repeat
Protein In Complex With The Maltose Binding Protein
Length = 169
Score = 49.3 bits (116), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 38/123 (30%), Positives = 62/123 (50%), Gaps = 19/123 (15%)
Query: 73 GETPLHVAAKFGHSDIVRVLVERAKLLQHENEELESGIRTARHMIRMTNKEKNTALHEAV 132
G TPLH+AA GH +IV VL L+H + + ++ T LH A
Sbjct: 47 GTTPLHLAAYSGHLEIVEVL------LKHGAD------------VDASDVFGYTPLHLAA 88
Query: 133 CHQNVDVVEILTKEDPDYPYSANNDGKTPLYMAADYRSSDMVLALLENSTSASHEGPNGK 192
++++VE+L K D + ++DG TPL++AA + ++V LL++ + + GK
Sbjct: 89 YWGHLEIVEVLLKNGADVN-AMDSDGMTPLHLAAKWGYLEIVEVLLKHGADVNAQDKFGK 147
Query: 193 TAL 195
TA
Sbjct: 148 TAF 150
Score = 42.0 bits (97), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 37/120 (30%), Positives = 57/120 (47%), Gaps = 6/120 (5%)
Query: 86 SDIVRVLVERAKLLQHENEELESGIRTARHM-IRMTNKEKNTALHEAVCHQNVDVVEILT 144
SD+ R L+E A+ Q + E I A + + T LH A ++++VE+L
Sbjct: 12 SDLGRKLLEAARAGQDD----EVRILMANGADVNAADNTGTTPLHLAAYSGHLEIVEVLL 67
Query: 145 KEDPDYPYSANNDGKTPLYMAADYRSSDMVLALLENSTSASHEGPNGKTALHAAAMKSYF 204
K D S + G TPL++AA + ++V LL+N + +G T LH AA Y
Sbjct: 68 KHGADVDAS-DVFGYTPLHLAAYWGHLEIVEVLLKNGADVNAMDSDGMTPLHLAAKWGYL 126
Score = 35.0 bits (79), Expect = 0.036, Method: Compositional matrix adjust.
Identities = 27/101 (26%), Positives = 45/101 (44%), Gaps = 19/101 (18%)
Query: 73 GETPLHVAAKFGHSDIVRVLVERAKLLQHENEELESGIRTARHMIRMTNKEKNTALHEAV 132
G TPLH+AA +GH +IV VL++ + + + T LH A
Sbjct: 80 GYTPLHLAAYWGHLEIVEVLLKNGA------------------DVNAMDSDGMTPLHLAA 121
Query: 133 CHQNVDVVEILTKEDPDYPYSANNDGKTPLYMAADYRSSDM 173
+++VE+L K D + + GKT ++ D + D+
Sbjct: 122 KWGYLEIVEVLLKHGADVN-AQDKFGKTAFDISIDNGNEDL 161
Score = 35.0 bits (79), Expect = 0.036, Method: Compositional matrix adjust.
Identities = 27/91 (29%), Positives = 45/91 (49%), Gaps = 18/91 (19%)
Query: 55 VEEILEKCPLLLLQVNAKGETPLHVAAKFGHSDIVRVLVERAKLLQHENEELESGIRTAR 114
+ E+L K + +++ G TPLH+AAK+G+ +IV V LL+H +
Sbjct: 95 IVEVLLKNGADVNAMDSDGMTPLHLAAKWGYLEIVEV------LLKHGAD---------- 138
Query: 115 HMIRMTNKEKNTALHEAVCHQNVDVVEILTK 145
+ +K TA ++ + N D+ EIL K
Sbjct: 139 --VNAQDKFGKTAFDISIDNGNEDLAEILQK 167
>pdb|2XEH|A Chain A, Structural Determinants For Improved Thermal Stability Of
Designed Ankyrin Repeat Proteins With A Redesigned C-
Capping Module.
pdb|2XEH|B Chain B, Structural Determinants For Improved Thermal Stability Of
Designed Ankyrin Repeat Proteins With A Redesigned C-
Capping Module.
pdb|2XEH|C Chain C, Structural Determinants For Improved Thermal Stability Of
Designed Ankyrin Repeat Proteins With A Redesigned C-
Capping Module
Length = 157
Score = 49.3 bits (116), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 42/129 (32%), Positives = 64/129 (49%), Gaps = 22/129 (17%)
Query: 68 QVNAK---GETPLHVAAKFGHSDIVRVLVERAKLLQHENEELESGIRTARHMIRMTNKEK 124
VNAK G TPLH+AA+ GH +IV VL L++G + +K+
Sbjct: 27 DVNAKDKDGYTPLHLAAREGHLEIVEVL-------------LKAGAD-----VNAKDKDG 68
Query: 125 NTALHEAVCHQNVDVVEILTKEDPDYPYSANNDGKTPLYMAADYRSSDMVLALLENSTSA 184
T LH A ++++VE+L K D + + DG TPL++AA ++V LL+
Sbjct: 69 YTPLHLAAREGHLEIVEVLLKAGADV-NAKDKDGYTPLHLAAREGHLEIVEVLLKAGADV 127
Query: 185 SHEGPNGKT 193
+ + GKT
Sbjct: 128 NAQDKFGKT 136
Score = 41.6 bits (96), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 35/138 (25%), Positives = 59/138 (42%), Gaps = 19/138 (13%)
Query: 80 AAKFGHSDIVRVLVERAKLLQHENEELESGIRTARHMIRMTNKEKNTALHEAVCHQNVDV 139
AA+ G D VR+L+ + +K+ T LH A ++++
Sbjct: 9 AARAGQDDEVRILMANGA------------------DVNAKDKDGYTPLHLAAREGHLEI 50
Query: 140 VEILTKEDPDYPYSANNDGKTPLYMAADYRSSDMVLALLENSTSASHEGPNGKTALHAAA 199
VE+L K D + + DG TPL++AA ++V LL+ + + +G T LH AA
Sbjct: 51 VEVLLKAGADV-NAKDKDGYTPLHLAAREGHLEIVEVLLKAGADVNAKDKDGYTPLHLAA 109
Query: 200 MKSYFGKFSYTLSVGISI 217
+ + L G +
Sbjct: 110 REGHLEIVEVLLKAGADV 127
Score = 40.0 bits (92), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 34/101 (33%), Positives = 50/101 (49%), Gaps = 22/101 (21%)
Query: 68 QVNAK---GETPLHVAAKFGHSDIVRVLVERAKLLQHENEELESGIRTARHMIRMTNKEK 124
VNAK G TPLH+AA+ GH +IV VL L++G + +K+
Sbjct: 60 DVNAKDKDGYTPLHLAAREGHLEIVEVL-------------LKAGAD-----VNAKDKDG 101
Query: 125 NTALHEAVCHQNVDVVEILTKEDPDYPYSANNDGKTPLYMA 165
T LH A ++++VE+L K D + + GKTP +A
Sbjct: 102 YTPLHLAAREGHLEIVEVLLKAGADV-NAQDKFGKTPFDLA 141
>pdb|4HQD|A Chain A, Crystal Structure Of Engineered Protein. Northeast
Structural Genomics Consortium Target Or265.
pdb|4HQD|B Chain B, Crystal Structure Of Engineered Protein. Northeast
Structural Genomics Consortium Target Or265
Length = 169
Score = 48.9 bits (115), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 40/155 (25%), Positives = 71/155 (45%), Gaps = 26/155 (16%)
Query: 47 SENASTKFVEEILEKCPLLLLQVNA---KGETPLHVAAKFGHSDIVRVLVERAKLLQHEN 103
+EN + V++++E VNA G TPLH AAK GH +IV++L+ +
Sbjct: 12 AENGNKDRVKDLIENGA----DVNASDSDGRTPLHYAAKEGHKEIVKLLISKGA------ 61
Query: 104 EELESGIRTARHMIRMTNKEKNTALHEAVCHQNVDVVEILTKEDPDYPYSANNDGKTPLY 163
+ + + T LH A + ++V++L + D + ++DG+TPL+
Sbjct: 62 ------------DVNAKDSDGRTPLHYAAKEGHKEIVKLLISKGADV-NAKDSDGRTPLH 108
Query: 164 MAADYRSSDMVLALLENSTSASHEGPNGKTALHAA 198
AA ++V L+ + +G+T L A
Sbjct: 109 YAAKEGHKEIVKLLISKGADVNTSDSDGRTPLDLA 143
Score = 46.2 bits (108), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 48/178 (26%), Positives = 79/178 (44%), Gaps = 32/178 (17%)
Query: 5 LFKAAAAGNLEPFKDIAREVIKRLLTAKTKNTILHVNIRSKESENASTKFVEEILEKCPL 64
L +AA GN + KD+ + T LH + E V+ ++ K
Sbjct: 8 LIEAAENGNKDRVKDLIENGADVNASDSDGRTPLHYAAKEGHKE-----IVKLLISKGA- 61
Query: 65 LLLQVNAK---GETPLHVAAKFGHSDIVRVLVERAKLLQHENEELESGIRTARHMIRMTN 121
VNAK G TPLH AAK GH +IV++L+ + + +
Sbjct: 62 ---DVNAKDSDGRTPLHYAAKEGHKEIVKLLISKGA------------------DVNAKD 100
Query: 122 KEKNTALHEAVCHQNVDVVEILTKEDPDYPYSANNDGKTPLYMAADYRSSDMVLALLE 179
+ T LH A + ++V++L + D S ++DG+TPL +A ++ + ++V LLE
Sbjct: 101 SDGRTPLHYAAKEGHKEIVKLLISKGADVNTS-DSDGRTPLDLAREHGNEEIV-KLLE 156
Score = 37.0 bits (84), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 24/101 (23%), Positives = 50/101 (49%), Gaps = 1/101 (0%)
Query: 117 IRMTNKEKNTALHEAVCHQNVDVVEILTKEDPDYPYSANNDGKTPLYMAADYRSSDMVLA 176
+ ++ + T LH A + ++V++L + D + ++DG+TPL+ AA ++V
Sbjct: 30 VNASDSDGRTPLHYAAKEGHKEIVKLLISKGADV-NAKDSDGRTPLHYAAKEGHKEIVKL 88
Query: 177 LLENSTSASHEGPNGKTALHAAAMKSYFGKFSYTLSVGISI 217
L+ + + +G+T LH AA + + +S G +
Sbjct: 89 LISKGADVNAKDSDGRTPLHYAAKEGHKEIVKLLISKGADV 129
Score = 34.7 bits (78), Expect = 0.046, Method: Compositional matrix adjust.
Identities = 25/88 (28%), Positives = 43/88 (48%), Gaps = 1/88 (1%)
Query: 130 EAVCHQNVDVVEILTKEDPDYPYSANNDGKTPLYMAADYRSSDMVLALLENSTSASHEGP 189
EA + N D V+ L + D S ++DG+TPL+ AA ++V L+ + +
Sbjct: 10 EAAENGNKDRVKDLIENGADVNAS-DSDGRTPLHYAAKEGHKEIVKLLISKGADVNAKDS 68
Query: 190 NGKTALHAAAMKSYFGKFSYTLSVGISI 217
+G+T LH AA + + +S G +
Sbjct: 69 DGRTPLHYAAKEGHKEIVKLLISKGADV 96
>pdb|2XEE|A Chain A, Structural Determinants For Improved Thermal Stability Of
Designed Ankyrin Repeat Proteins With A Redesigned C-
Capping Module.
pdb|2XEE|B Chain B, Structural Determinants For Improved Thermal Stability Of
Designed Ankyrin Repeat Proteins With A Redesigned C-
Capping Module.
pdb|2XEE|C Chain C, Structural Determinants For Improved Thermal Stability Of
Designed Ankyrin Repeat Proteins With A Redesigned C-
Capping Module.
pdb|2XEE|D Chain D, Structural Determinants For Improved Thermal Stability Of
Designed Ankyrin Repeat Proteins With A Redesigned C-
Capping Module
Length = 157
Score = 48.9 bits (115), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 42/129 (32%), Positives = 64/129 (49%), Gaps = 22/129 (17%)
Query: 68 QVNAK---GETPLHVAAKFGHSDIVRVLVERAKLLQHENEELESGIRTARHMIRMTNKEK 124
VNAK G TPLH+AA+ GH +IV VL L++G + +K+
Sbjct: 27 DVNAKDKDGYTPLHLAAREGHLEIVEVL-------------LKAGAD-----VNAKDKDG 68
Query: 125 NTALHEAVCHQNVDVVEILTKEDPDYPYSANNDGKTPLYMAADYRSSDMVLALLENSTSA 184
T LH A ++++VE+L K D + + DG TPL++AA ++V LL+
Sbjct: 69 YTPLHLAAREGHLEIVEVLLKAGADV-NAKDKDGYTPLHLAAREGHLEIVEVLLKAGADV 127
Query: 185 SHEGPNGKT 193
+ + GKT
Sbjct: 128 NAQDKFGKT 136
Score = 42.7 bits (99), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 36/109 (33%), Positives = 54/109 (49%), Gaps = 22/109 (20%)
Query: 68 QVNAK---GETPLHVAAKFGHSDIVRVLVERAKLLQHENEELESGIRTARHMIRMTNKEK 124
VNAK G TPLH+AA+ GH +IV VL L++G + +K+
Sbjct: 60 DVNAKDKDGYTPLHLAAREGHLEIVEVL-------------LKAGAD-----VNAKDKDG 101
Query: 125 NTALHEAVCHQNVDVVEILTKEDPDYPYSANNDGKTPLYMAADYRSSDM 173
T LH A ++++VE+L K D + + GKTP +A D + D+
Sbjct: 102 YTPLHLAAREGHLEIVEVLLKAGADV-NAQDKFGKTPFDLAIDNGNEDI 149
Score = 41.6 bits (96), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 35/138 (25%), Positives = 59/138 (42%), Gaps = 19/138 (13%)
Query: 80 AAKFGHSDIVRVLVERAKLLQHENEELESGIRTARHMIRMTNKEKNTALHEAVCHQNVDV 139
AA+ G D VR+L+ + +K+ T LH A ++++
Sbjct: 9 AARAGQDDEVRILMANGA------------------DVNAKDKDGYTPLHLAAREGHLEI 50
Query: 140 VEILTKEDPDYPYSANNDGKTPLYMAADYRSSDMVLALLENSTSASHEGPNGKTALHAAA 199
VE+L K D + + DG TPL++AA ++V LL+ + + +G T LH AA
Sbjct: 51 VEVLLKAGADV-NAKDKDGYTPLHLAAREGHLEIVEVLLKAGADVNAKDKDGYTPLHLAA 109
Query: 200 MKSYFGKFSYTLSVGISI 217
+ + L G +
Sbjct: 110 REGHLEIVEVLLKAGADV 127
Score = 32.3 bits (72), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 27/81 (33%), Positives = 38/81 (46%), Gaps = 21/81 (25%)
Query: 68 QVNAK---GETPLHVAAKFGHSDIVRVLVERAKLLQHENEELESGIRTARHMIRMTNKEK 124
VNAK G TPLH+AA+ GH +IV VL L++G + +K
Sbjct: 93 DVNAKDKDGYTPLHLAAREGHLEIVEVL-------------LKAGAD-----VNAQDKFG 134
Query: 125 NTALHEAVCHQNVDVVEILTK 145
T A+ + N D+ E+L K
Sbjct: 135 KTPFDLAIDNGNEDIAEVLQK 155
>pdb|4DUI|A Chain A, Darpin D1 Binding To Tubulin Beta Chain (not In Complex)
Length = 169
Score = 48.9 bits (115), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 38/126 (30%), Positives = 62/126 (49%), Gaps = 19/126 (15%)
Query: 70 NAKGETPLHVAAKFGHSDIVRVLVERAKLLQHENEELESGIRTARHMIRMTNKEKNTALH 129
+A G TPLH+AA +GH +IV V LL+H + + + +T LH
Sbjct: 44 DASGLTPLHLAATYGHLEIVEV------LLKHGAD------------VNAIDIXGSTPLH 85
Query: 130 EAVCHQNVDVVEILTKEDPDYPYSANNDGKTPLYMAADYRSSDMVLALLENSTSASHEGP 189
A ++++VE+L K D + + G TPL++AA ++V LL++ + +
Sbjct: 86 LAALIGHLEIVEVLLKHGADV-NAVDTWGDTPLHLAAIMGHLEIVEVLLKHGADVNAQDK 144
Query: 190 NGKTAL 195
GKTA
Sbjct: 145 FGKTAF 150
Score = 38.5 bits (88), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 29/105 (27%), Positives = 49/105 (46%), Gaps = 19/105 (18%)
Query: 69 VNAKGETPLHVAAKFGHSDIVRVLVERAKLLQHENEELESGIRTARHMIRMTNKEKNTAL 128
++ G TPLH+AA GH +IV V LL+H + + + +T L
Sbjct: 76 IDIXGSTPLHLAALIGHLEIVEV------LLKHGAD------------VNAVDTWGDTPL 117
Query: 129 HEAVCHQNVDVVEILTKEDPDYPYSANNDGKTPLYMAADYRSSDM 173
H A ++++VE+L K D + + GKT ++ D + D+
Sbjct: 118 HLAAIMGHLEIVEVLLKHGADV-NAQDKFGKTAFDISIDNGNEDL 161
Score = 37.0 bits (84), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 32/125 (25%), Positives = 54/125 (43%), Gaps = 19/125 (15%)
Query: 80 AAKFGHSDIVRVLVERAKLLQHENEELESGIRTARHMIRMTNKEKNTALHEAVCHQNVDV 139
AA+ G D VR+L+ + T+ T LH A + ++++
Sbjct: 21 AARAGQDDEVRILMANGA------------------DVNATDASGLTPLHLAATYGHLEI 62
Query: 140 VEILTKEDPDYPYSANNDGKTPLYMAADYRSSDMVLALLENSTSASHEGPNGKTALHAAA 199
VE+L K D + + G TPL++AA ++V LL++ + G T LH AA
Sbjct: 63 VEVLLKHGADV-NAIDIXGSTPLHLAALIGHLEIVEVLLKHGADVNAVDTWGDTPLHLAA 121
Query: 200 MKSYF 204
+ +
Sbjct: 122 IMGHL 126
Score = 33.9 bits (76), Expect = 0.073, Method: Compositional matrix adjust.
Identities = 25/77 (32%), Positives = 37/77 (48%), Gaps = 18/77 (23%)
Query: 69 VNAKGETPLHVAAKFGHSDIVRVLVERAKLLQHENEELESGIRTARHMIRMTNKEKNTAL 128
V+ G+TPLH+AA GH +IV V LL+H + + +K TA
Sbjct: 109 VDTWGDTPLHLAAIMGHLEIVEV------LLKHGAD------------VNAQDKFGKTAF 150
Query: 129 HEAVCHQNVDVVEILTK 145
++ + N D+ EIL K
Sbjct: 151 DISIDNGNEDLAEILQK 167
>pdb|4DRX|E Chain E, Gtp-Tubulin In Complex With A Darpin
pdb|4DRX|F Chain F, Gtp-Tubulin In Complex With A Darpin
Length = 169
Score = 48.5 bits (114), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 38/125 (30%), Positives = 62/125 (49%), Gaps = 19/125 (15%)
Query: 70 NAKGETPLHVAAKFGHSDIVRVLVERAKLLQHENEELESGIRTARHMIRMTNKEKNTALH 129
+A G TPLH+AA +GH +IV V LL+H + + + +T LH
Sbjct: 44 DASGLTPLHLAATYGHLEIVEV------LLKHGAD------------VNAIDIMGSTPLH 85
Query: 130 EAVCHQNVDVVEILTKEDPDYPYSANNDGKTPLYMAADYRSSDMVLALLENSTSASHEGP 189
A ++++VE+L K D + + G TPL++AA ++V LL++ + +
Sbjct: 86 LAALIGHLEIVEVLLKHGADV-NAVDTWGDTPLHLAAIMGHLEIVEVLLKHGADVNAQDK 144
Query: 190 NGKTA 194
GKTA
Sbjct: 145 FGKTA 149
Score = 38.5 bits (88), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 29/105 (27%), Positives = 49/105 (46%), Gaps = 19/105 (18%)
Query: 69 VNAKGETPLHVAAKFGHSDIVRVLVERAKLLQHENEELESGIRTARHMIRMTNKEKNTAL 128
++ G TPLH+AA GH +IV V LL+H + + + +T L
Sbjct: 76 IDIMGSTPLHLAALIGHLEIVEV------LLKHGAD------------VNAVDTWGDTPL 117
Query: 129 HEAVCHQNVDVVEILTKEDPDYPYSANNDGKTPLYMAADYRSSDM 173
H A ++++VE+L K D + + GKT ++ D + D+
Sbjct: 118 HLAAIMGHLEIVEVLLKHGADV-NAQDKFGKTAFDISIDNGNEDL 161
Score = 36.2 bits (82), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 32/125 (25%), Positives = 54/125 (43%), Gaps = 19/125 (15%)
Query: 80 AAKFGHSDIVRVLVERAKLLQHENEELESGIRTARHMIRMTNKEKNTALHEAVCHQNVDV 139
AA+ G D VR+L+ + T+ T LH A + ++++
Sbjct: 21 AARAGQDDEVRILMANGA------------------DVNATDASGLTPLHLAATYGHLEI 62
Query: 140 VEILTKEDPDYPYSANNDGKTPLYMAADYRSSDMVLALLENSTSASHEGPNGKTALHAAA 199
VE+L K D + + G TPL++AA ++V LL++ + G T LH AA
Sbjct: 63 VEVLLKHGADV-NAIDIMGSTPLHLAALIGHLEIVEVLLKHGADVNAVDTWGDTPLHLAA 121
Query: 200 MKSYF 204
+ +
Sbjct: 122 IMGHL 126
Score = 33.9 bits (76), Expect = 0.070, Method: Compositional matrix adjust.
Identities = 25/77 (32%), Positives = 37/77 (48%), Gaps = 18/77 (23%)
Query: 69 VNAKGETPLHVAAKFGHSDIVRVLVERAKLLQHENEELESGIRTARHMIRMTNKEKNTAL 128
V+ G+TPLH+AA GH +IV V LL+H + + +K TA
Sbjct: 109 VDTWGDTPLHLAAIMGHLEIVEV------LLKHGAD------------VNAQDKFGKTAF 150
Query: 129 HEAVCHQNVDVVEILTK 145
++ + N D+ EIL K
Sbjct: 151 DISIDNGNEDLAEILQK 167
>pdb|4ATZ|D Chain D, Ad5 Knob In Complex With A Designed Ankyrin Repeat Protein
pdb|4ATZ|E Chain E, Ad5 Knob In Complex With A Designed Ankyrin Repeat Protein
pdb|4ATZ|F Chain F, Ad5 Knob In Complex With A Designed Ankyrin Repeat Protein
Length = 154
Score = 48.1 bits (113), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 36/123 (29%), Positives = 56/123 (45%), Gaps = 19/123 (15%)
Query: 73 GETPLHVAAKFGHSDIVRVLVERAKLLQHENEELESGIRTARHMIRMTNKEKNTALHEAV 132
G TPLH+AA GH +IV VL+ + + T LH A
Sbjct: 35 GRTPLHMAAAVGHLEIVEVLLRNGA------------------DVNAVDTNGTTPLHLAA 76
Query: 133 CHQNVDVVEILTKEDPDYPYSANNDGKTPLYMAADYRSSDMVLALLENSTSASHEGPNGK 192
++++VE+L K D + + G TPLY+AA + ++V LL++ + + GK
Sbjct: 77 SLGHLEIVEVLLKYGADVN-AKDATGITPLYLAAYWGHLEIVEVLLKHGADVNAQDKFGK 135
Query: 193 TAL 195
TA
Sbjct: 136 TAF 138
Score = 35.8 bits (81), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 30/105 (28%), Positives = 50/105 (47%), Gaps = 19/105 (18%)
Query: 69 VNAKGETPLHVAAKFGHSDIVRVLVERAKLLQHENEELESGIRTARHMIRMTNKEKNTAL 128
V+ G TPLH+AA GH +IV VL++ + N + +GI T L
Sbjct: 64 VDTNGTTPLHLAASLGHLEIVEVLLKYGADV---NAKDATGI---------------TPL 105
Query: 129 HEAVCHQNVDVVEILTKEDPDYPYSANNDGKTPLYMAADYRSSDM 173
+ A ++++VE+L K D + + GKT ++ D + D+
Sbjct: 106 YLAAYWGHLEIVEVLLKHGADVN-AQDKFGKTAFDISIDIGNEDL 149
Score = 32.3 bits (72), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 20/60 (33%), Positives = 27/60 (45%)
Query: 158 GKTPLYMAADYRSSDMVLALLENSTSASHEGPNGKTALHAAAMKSYFGKFSYTLSVGISI 217
G+TPL+MAA ++V LL N + NG T LH AA + L G +
Sbjct: 35 GRTPLHMAAAVGHLEIVEVLLRNGADVNAVDTNGTTPLHLAASLGHLEIVEVLLKYGADV 94
Score = 30.8 bits (68), Expect = 0.66, Method: Compositional matrix adjust.
Identities = 19/43 (44%), Positives = 26/43 (60%), Gaps = 3/43 (6%)
Query: 57 EILEKCPLLLLQVNAK---GETPLHVAAKFGHSDIVRVLVERA 96
EI+E VNAK G TPL++AA +GH +IV VL++
Sbjct: 82 EIVEVLLKYGADVNAKDATGITPLYLAAYWGHLEIVEVLLKHG 124
>pdb|3ZU7|B Chain B, Crystal Structure Of A Designed Selected Ankyrin Repeat
Protein In Complex With The Map Kinase Erk2
Length = 169
Score = 48.1 bits (113), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 41/131 (31%), Positives = 65/131 (49%), Gaps = 22/131 (16%)
Query: 68 QVNA---KGETPLHVAAKFGHSDIVRVLVERAKLLQHENEELESGIRTARHMIRMTNKEK 124
VNA +G TPLH+AA GH +IV V LL+H + + + +
Sbjct: 39 DVNAHDDQGSTPLHLAAWIGHPEIVEV------LLKHGAD------------VNARDTDG 80
Query: 125 NTALHEAVCHQNVDVVEILTKEDPDYPYSANNDGKTPLYMAADYRSSDMVLALLENSTSA 184
T LH A + ++++VE+L K D + + G TPL++AAD ++V LL++
Sbjct: 81 WTPLHLAADNGHLEIVEVLLKYGADV-NAQDAYGLTPLHLAADRGHLEIVEVLLKHGADV 139
Query: 185 SHEGPNGKTAL 195
+ + GKTA
Sbjct: 140 NAQDKFGKTAF 150
Score = 40.8 bits (94), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 35/125 (28%), Positives = 57/125 (45%), Gaps = 19/125 (15%)
Query: 80 AAKFGHSDIVRVLVERAKLLQHENEELESGIRTARHMIRMTNKEKNTALHEAVCHQNVDV 139
AA+ G D VR+L + +G H + + +T LH A + ++
Sbjct: 21 AARAGQDDEVRIL-------------MANGADVNAH-----DDQGSTPLHLAAWIGHPEI 62
Query: 140 VEILTKEDPDYPYSANNDGKTPLYMAADYRSSDMVLALLENSTSASHEGPNGKTALHAAA 199
VE+L K D + + DG TPL++AAD ++V LL+ + + G T LH AA
Sbjct: 63 VEVLLKHGADV-NARDTDGWTPLHLAADNGHLEIVEVLLKYGADVNAQDAYGLTPLHLAA 121
Query: 200 MKSYF 204
+ +
Sbjct: 122 DRGHL 126
Score = 32.7 bits (73), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 30/99 (30%), Positives = 47/99 (47%), Gaps = 19/99 (19%)
Query: 47 SENASTKFVEEILEKCPLLLLQVNAKGETPLHVAAKFGHSDIVRVLVERAKLLQHENEEL 106
++N + VE +L+ + Q +A G TPLH+AA GH +IV V LL+H +
Sbjct: 88 ADNGHLEIVEVLLKYGADVNAQ-DAYGLTPLHLAADRGHLEIVEV------LLKHGAD-- 138
Query: 107 ESGIRTARHMIRMTNKEKNTALHEAVCHQNVDVVEILTK 145
+ +K TA ++ + N D+ EIL K
Sbjct: 139 ----------VNAQDKFGKTAFDISIDNGNEDLAEILQK 167
>pdb|4GPM|A Chain A, Crystal Structure Of Engineered Protein. Northeast
Structural Genomics Consortium Target Or264.
pdb|4GPM|B Chain B, Crystal Structure Of Engineered Protein. Northeast
Structural Genomics Consortium Target Or264
Length = 169
Score = 48.1 bits (113), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 48/178 (26%), Positives = 82/178 (46%), Gaps = 32/178 (17%)
Query: 5 LFKAAAAGNLEPFKDIAREVIKRLLTAKTKNTILHVNIRSKESENASTKFVEEILEKCPL 64
L +AA GN + KD+ + T LH +EN + V+ ++ K
Sbjct: 8 LIEAAENGNKDRVKDLIENGADVNASDSDGRTPLH-----HAAENGHKEVVKLLISKGA- 61
Query: 65 LLLQVNAK---GETPLHVAAKFGHSDIVRVLVERAKLLQHENEELESGIRTARHMIRMTN 121
VNAK G TPLH AA+ GH ++V++L+ + + +
Sbjct: 62 ---DVNAKDSDGRTPLHHAAENGHKEVVKLLISKGA------------------DVNAKD 100
Query: 122 KEKNTALHEAVCHQNVDVVEILTKEDPDYPYSANNDGKTPLYMAADYRSSDMVLALLE 179
+ T LH A + + +VV++L + D S ++DG+TPL +A ++ ++ V+ LLE
Sbjct: 101 SDGRTPLHHAAENGHKEVVKLLISKGADVNTS-DSDGRTPLDLAREH-GNEEVVKLLE 156
Score = 47.4 bits (111), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 38/152 (25%), Positives = 72/152 (47%), Gaps = 26/152 (17%)
Query: 47 SENASTKFVEEILEKCPLLLLQVNA---KGETPLHVAAKFGHSDIVRVLVERAKLLQHEN 103
+EN + V++++E VNA G TPLH AA+ GH ++V++L+ +
Sbjct: 12 AENGNKDRVKDLIENGA----DVNASDSDGRTPLHHAAENGHKEVVKLLISKGA------ 61
Query: 104 EELESGIRTARHMIRMTNKEKNTALHEAVCHQNVDVVEILTKEDPDYPYSANNDGKTPLY 163
+ + + T LH A + + +VV++L + D + ++DG+TPL+
Sbjct: 62 ------------DVNAKDSDGRTPLHHAAENGHKEVVKLLISKGADV-NAKDSDGRTPLH 108
Query: 164 MAADYRSSDMVLALLENSTSASHEGPNGKTAL 195
AA+ ++V L+ + +G+T L
Sbjct: 109 HAAENGHKEVVKLLISKGADVNTSDSDGRTPL 140
Score = 38.9 bits (89), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 26/104 (25%), Positives = 52/104 (50%), Gaps = 1/104 (0%)
Query: 117 IRMTNKEKNTALHEAVCHQNVDVVEILTKEDPDYPYSANNDGKTPLYMAADYRSSDMVLA 176
+ ++ + T LH A + + +VV++L + D + ++DG+TPL+ AA+ ++V
Sbjct: 30 VNASDSDGRTPLHHAAENGHKEVVKLLISKGADV-NAKDSDGRTPLHHAAENGHKEVVKL 88
Query: 177 LLENSTSASHEGPNGKTALHAAAMKSYFGKFSYTLSVGISILIS 220
L+ + + +G+T LH AA + +S G + S
Sbjct: 89 LISKGADVNAKDSDGRTPLHHAAENGHKEVVKLLISKGADVNTS 132
Score = 35.0 bits (79), Expect = 0.029, Method: Compositional matrix adjust.
Identities = 25/88 (28%), Positives = 43/88 (48%), Gaps = 1/88 (1%)
Query: 130 EAVCHQNVDVVEILTKEDPDYPYSANNDGKTPLYMAADYRSSDMVLALLENSTSASHEGP 189
EA + N D V+ L + D S ++DG+TPL+ AA+ ++V L+ + +
Sbjct: 10 EAAENGNKDRVKDLIENGADVNAS-DSDGRTPLHHAAENGHKEVVKLLISKGADVNAKDS 68
Query: 190 NGKTALHAAAMKSYFGKFSYTLSVGISI 217
+G+T LH AA + +S G +
Sbjct: 69 DGRTPLHHAAENGHKEVVKLLISKGADV 96
>pdb|4HB5|A Chain A, Crystal Structure Of Engineered Protein. Northeast
Structural Genomics Consortium Target Or267.
pdb|4HB5|B Chain B, Crystal Structure Of Engineered Protein. Northeast
Structural Genomics Consortium Target Or267
Length = 169
Score = 47.8 bits (112), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 41/155 (26%), Positives = 72/155 (46%), Gaps = 26/155 (16%)
Query: 47 SENASTKFVEEILEKCPLLLLQVNA---KGETPLHVAAKFGHSDIVRVLVERAKLLQHEN 103
+EN + V+++LE NA G TPLH AA+ GH +IV++L+ +
Sbjct: 12 AENGNKDRVKDLLENG----ADPNASDSDGRTPLHYAAENGHKEIVKLLLSKGA------ 61
Query: 104 EELESGIRTARHMIRMTNKEKNTALHEAVCHQNVDVVEILTKEDPDYPYSANNDGKTPLY 163
+ + T LH A + + ++V++L + D P + ++DG+TPL+
Sbjct: 62 ------------DPNAKDSDGRTPLHYAAENGHKEIVKLLLSKGAD-PNAKDSDGRTPLH 108
Query: 164 MAADYRSSDMVLALLENSTSASHEGPNGKTALHAA 198
AA+ ++V LL + +G+T L A
Sbjct: 109 YAAENGHKEIVKLLLSKGADPNTSDSDGRTPLDLA 143
Score = 47.4 bits (111), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 48/178 (26%), Positives = 82/178 (46%), Gaps = 32/178 (17%)
Query: 5 LFKAAAAGNLEPFKDIAREVIKRLLTAKTKNTILHVNIRSKESENASTKFVEEILEKCPL 64
L +AA GN + KD+ + T LH +EN + V+ +L K
Sbjct: 8 LIEAAENGNKDRVKDLLENGADPNASDSDGRTPLHY-----AAENGHKEIVKLLLSKG-- 60
Query: 65 LLLQVNAK---GETPLHVAAKFGHSDIVRVLVERAKLLQHENEELESGIRTARHMIRMTN 121
NAK G TPLH AA+ GH +IV++L+ + +
Sbjct: 61 --ADPNAKDSDGRTPLHYAAENGHKEIVKLLLSKGA------------------DPNAKD 100
Query: 122 KEKNTALHEAVCHQNVDVVEILTKEDPDYPYSANNDGKTPLYMAADYRSSDMVLALLE 179
+ T LH A + + ++V++L + D P ++++DG+TPL +A ++ + ++V LLE
Sbjct: 101 SDGRTPLHYAAENGHKEIVKLLLSKGAD-PNTSDSDGRTPLDLAREHGNEEIV-KLLE 156
Score = 39.7 bits (91), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 27/95 (28%), Positives = 50/95 (52%), Gaps = 1/95 (1%)
Query: 120 TNKEKNTALHEAVCHQNVDVVEILTKEDPDYPYSANNDGKTPLYMAADYRSSDMVLALLE 179
++ + T LH A + + ++V++L + D P + ++DG+TPL+ AA+ ++V LL
Sbjct: 33 SDSDGRTPLHYAAENGHKEIVKLLLSKGAD-PNAKDSDGRTPLHYAAENGHKEIVKLLLS 91
Query: 180 NSTSASHEGPNGKTALHAAAMKSYFGKFSYTLSVG 214
+ + +G+T LH AA + LS G
Sbjct: 92 KGADPNAKDSDGRTPLHYAAENGHKEIVKLLLSKG 126
Score = 38.1 bits (87), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 27/85 (31%), Positives = 44/85 (51%), Gaps = 1/85 (1%)
Query: 130 EAVCHQNVDVVEILTKEDPDYPYSANNDGKTPLYMAADYRSSDMVLALLENSTSASHEGP 189
EA + N D V+ L + D P ++++DG+TPL+ AA+ ++V LL + +
Sbjct: 10 EAAENGNKDRVKDLLENGAD-PNASDSDGRTPLHYAAENGHKEIVKLLLSKGADPNAKDS 68
Query: 190 NGKTALHAAAMKSYFGKFSYTLSVG 214
+G+T LH AA + LS G
Sbjct: 69 DGRTPLHYAAENGHKEIVKLLLSKG 93
>pdb|2Y1L|E Chain E, Caspase-8 In Complex With Darpin-8.4
pdb|2Y1L|F Chain F, Caspase-8 In Complex With Darpin-8.4
Length = 169
Score = 47.0 bits (110), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 38/127 (29%), Positives = 61/127 (48%), Gaps = 21/127 (16%)
Query: 70 NAKGETPLHVAAKFGHSDIVRVLVERAKLLQHENEELESGIRTARHMIRMTNKEKNTALH 129
+A G TPLH+AA GH +IV VL++ + + T L
Sbjct: 44 DASGWTPLHLAAFNGHLEIVEVLLKNGA------------------DVNAVDHAGMTPLR 85
Query: 130 EAVCHQNVDVVEILTKEDPDYPYSANN-DGKTPLYMAADYRSSDMVLALLENSTSASHEG 188
A ++++VE+L K D +AN+ +G TPL++AA + ++V LL+N + +
Sbjct: 86 LAALFGHLEIVEVLLKNGAD--VNANDMEGHTPLHLAAMFGHLEIVEVLLKNGADVNAQD 143
Query: 189 PNGKTAL 195
GKTA
Sbjct: 144 KFGKTAF 150
Score = 40.8 bits (94), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 37/125 (29%), Positives = 57/125 (45%), Gaps = 19/125 (15%)
Query: 80 AAKFGHSDIVRVLVERAKLLQHENEELESGIRTARHMIRMTNKEKNTALHEAVCHQNVDV 139
AA+ G D VR+L+ + N E SG T LH A + ++++
Sbjct: 21 AARAGRDDEVRILMANGADV---NAEDASGW---------------TPLHLAAFNGHLEI 62
Query: 140 VEILTKEDPDYPYSANNDGKTPLYMAADYRSSDMVLALLENSTSASHEGPNGKTALHAAA 199
VE+L K D + ++ G TPL +AA + ++V LL+N + G T LH AA
Sbjct: 63 VEVLLKNGADV-NAVDHAGMTPLRLAALFGHLEIVEVLLKNGADVNANDMEGHTPLHLAA 121
Query: 200 MKSYF 204
M +
Sbjct: 122 MFGHL 126
Score = 38.1 bits (87), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 32/119 (26%), Positives = 54/119 (45%), Gaps = 19/119 (15%)
Query: 55 VEEILEKCPLLLLQVNAKGETPLHVAAKFGHSDIVRVLVERAKLLQHENEELESGIRTAR 114
+ E+L K + V+ G TPL +AA FGH +IV VL++
Sbjct: 62 IVEVLLKNGADVNAVDHAGMTPLRLAALFGHLEIVEVLLKNGA----------------- 104
Query: 115 HMIRMTNKEKNTALHEAVCHQNVDVVEILTKEDPDYPYSANNDGKTPLYMAADYRSSDM 173
+ + E +T LH A ++++VE+L K D + + GKT ++ D + D+
Sbjct: 105 -DVNANDMEGHTPLHLAAMFGHLEIVEVLLKNGADV-NAQDKFGKTAFDISIDNGNEDL 161
Score = 34.7 bits (78), Expect = 0.048, Method: Compositional matrix adjust.
Identities = 23/74 (31%), Positives = 34/74 (45%), Gaps = 18/74 (24%)
Query: 72 KGETPLHVAAKFGHSDIVRVLVERAKLLQHENEELESGIRTARHMIRMTNKEKNTALHEA 131
+G TPLH+AA FGH +IV VL++ + +K TA +
Sbjct: 112 EGHTPLHLAAMFGHLEIVEVLLKNGA------------------DVNAQDKFGKTAFDIS 153
Query: 132 VCHQNVDVVEILTK 145
+ + N D+ EIL K
Sbjct: 154 IDNGNEDLAEILQK 167
>pdb|2J8S|D Chain D, Drug Export Pathway Of Multidrug Exporter Acrb Revealed By
Darpin Inhibitors
pdb|2J8S|E Chain E, Drug Export Pathway Of Multidrug Exporter Acrb Revealed By
Darpin Inhibitors
pdb|4DX5|D Chain D, Transport Of Drugs By The Multidrug Transporter Acrb
Involves An Access And A Deep Binding Pocket That Are
Separated By A Switch-Loop
pdb|4DX5|E Chain E, Transport Of Drugs By The Multidrug Transporter Acrb
Involves An Access And A Deep Binding Pocket That Are
Separated By A Switch-Loop
pdb|4DX6|D Chain D, Transport Of Drugs By The Multidrug Transporter Acrb
Involves An Access And A Deep Binding Pocket That Are
Separated By A Switch-Loop
pdb|4DX6|E Chain E, Transport Of Drugs By The Multidrug Transporter Acrb
Involves An Access And A Deep Binding Pocket That Are
Separated By A Switch-Loop
pdb|4DX7|D Chain D, Transport Of Drugs By The Multidrug Transporter Acrb
Involves An Access And A Deep Binding Pocket That Are
Separated By A Switch-Loop
pdb|4DX7|E Chain E, Transport Of Drugs By The Multidrug Transporter Acrb
Involves An Access And A Deep Binding Pocket That Are
Separated By A Switch-Loop
Length = 169
Score = 46.6 bits (109), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 36/123 (29%), Positives = 58/123 (47%), Gaps = 19/123 (15%)
Query: 73 GETPLHVAAKFGHSDIVRVLVERAKLLQHENEELESGIRTARHMIRMTNKEKNTALHEAV 132
G TPLH+AA +GH +IV VL++ + + +T LH A
Sbjct: 47 GWTPLHLAAYWGHLEIVEVLLKNGA------------------DVNAYDTLGSTPLHLAA 88
Query: 133 CHQNVDVVEILTKEDPDYPYSANNDGKTPLYMAADYRSSDMVLALLENSTSASHEGPNGK 192
++++VE+L K D +N G TPL++AA+ ++V LL+ + + GK
Sbjct: 89 HFGHLEIVEVLLKNGADVNAKDDN-GITPLHLAANRGHLEIVEVLLKYGADVNAQDKFGK 147
Query: 193 TAL 195
TA
Sbjct: 148 TAF 150
Score = 42.0 bits (97), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 28/92 (30%), Positives = 46/92 (50%), Gaps = 1/92 (1%)
Query: 126 TALHEAVCHQNVDVVEILTKEDPDYPYSANNDGKTPLYMAADYRSSDMVLALLENSTSAS 185
T LH A ++++VE+L K D + + G TPL++AA + ++V LL+N +
Sbjct: 49 TPLHLAAYWGHLEIVEVLLKNGADVN-AYDTLGSTPLHLAAHFGHLEIVEVLLKNGADVN 107
Query: 186 HEGPNGKTALHAAAMKSYFGKFSYTLSVGISI 217
+ NG T LH AA + + L G +
Sbjct: 108 AKDDNGITPLHLAANRGHLEIVEVLLKYGADV 139
Score = 37.4 bits (85), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 30/101 (29%), Positives = 50/101 (49%), Gaps = 19/101 (18%)
Query: 73 GETPLHVAAKFGHSDIVRVLVERAKLLQHENEELESGIRTARHMIRMTNKEKNTALHEAV 132
G TPLH+AA FGH +IV VL++ + N + ++GI T LH A
Sbjct: 80 GSTPLHLAAHFGHLEIVEVLLKNGADV---NAKDDNGI---------------TPLHLAA 121
Query: 133 CHQNVDVVEILTKEDPDYPYSANNDGKTPLYMAADYRSSDM 173
++++VE+L K D + + GKT ++ + + D+
Sbjct: 122 NRGHLEIVEVLLKYGADVN-AQDKFGKTAFDISINNGNEDL 161
Score = 29.3 bits (64), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 24/70 (34%), Positives = 34/70 (48%), Gaps = 4/70 (5%)
Query: 138 DVVEILTKEDPDYPYSANNDGKTPLYMAADYRSSDMVLALLENSTSASHEGPNGKTALHA 197
D V IL D +A+ G TPL++AA + ++V LL+N + G T LH
Sbjct: 28 DEVRILMANGADVN-AADVVGWTPLHLAAYWGHLEIVEVLLKNGADVNAYDTLGSTPLHL 86
Query: 198 AAMKSYFGKF 207
AA +FG
Sbjct: 87 AA---HFGHL 93
>pdb|3HRA|A Chain A, Crystal Structure Of Ef0377 An Ankyrin Repeat Protein
Length = 201
Score = 45.4 bits (106), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 47/177 (26%), Positives = 78/177 (44%), Gaps = 27/177 (15%)
Query: 51 STKFVEEILEKCPLLLLQVNAKGETPLHVAAKFGHSDIVRVLVERAKLLQHEN------- 103
TK V+EIL+ + +V+ +G TPL++A +I + L++R + +N
Sbjct: 17 DTKKVKEILQDTTYQVDEVDTEGNTPLNIAVHNNDIEIAKALIDRGADINLQNSISDSPY 76
Query: 104 ---------EELESGIRTARHMIRMTNKEKNTALHEAVCHQNVDVVEIL---TKEDPDYP 151
E L ++ A + N+ AL A ++D V++L +ED D+
Sbjct: 77 LYAGAQGRTEILAYMLKHATPDLNKHNRYGGNALIPAAEKGHIDNVKLLLEDGREDIDFQ 136
Query: 152 YSANNDGKTPLYMAADYRSS-----DMVLALLENSTSASHEGPNGKTALHAAAMKSY 203
N+ G T L A R D+V L+EN S + +G+TA+ A K Y
Sbjct: 137 ---NDFGYTALIEAVGLREGNQLYQDIVKLLMENGADQSIKDNSGRTAMDYANQKGY 190
>pdb|1N0Q|A Chain A, 3ank: A Designed Ankyrin Repeat Protein With Three
Identical Consensus Repeats
pdb|1N0Q|B Chain B, 3ank: A Designed Ankyrin Repeat Protein With Three
Identical Consensus Repeats
Length = 93
Score = 45.1 bits (105), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 33/107 (30%), Positives = 57/107 (53%), Gaps = 19/107 (17%)
Query: 73 GETPLHVAAKFGHSDIVRVLVERAKLLQHENEELESGIRTARHMIRMTNKEKNTALHEAV 132
G TPLH+AA+ GH ++V++L LE+G + +K T LH A
Sbjct: 2 GRTPLHLAARNGHLEVVKLL-------------LEAGAD-----VNAKDKNGRTPLHLAA 43
Query: 133 CHQNVDVVEILTKEDPDYPYSANNDGKTPLYMAADYRSSDMVLALLE 179
+ +++VV++L + D + + +G+TPL++AA ++V LLE
Sbjct: 44 RNGHLEVVKLLLEAGADV-NAKDKNGRTPLHLAARNGHLEVVKLLLE 89
Score = 41.2 bits (95), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 27/89 (30%), Positives = 46/89 (51%), Gaps = 1/89 (1%)
Query: 126 TALHEAVCHQNVDVVEILTKEDPDYPYSANNDGKTPLYMAADYRSSDMVLALLENSTSAS 185
T LH A + +++VV++L + D + + +G+TPL++AA ++V LLE +
Sbjct: 4 TPLHLAARNGHLEVVKLLLEAGADV-NAKDKNGRTPLHLAARNGHLEVVKLLLEAGADVN 62
Query: 186 HEGPNGKTALHAAAMKSYFGKFSYTLSVG 214
+ NG+T LH AA + L G
Sbjct: 63 AKDKNGRTPLHLAARNGHLEVVKLLLEAG 91
Score = 35.0 bits (79), Expect = 0.032, Method: Compositional matrix adjust.
Identities = 19/61 (31%), Positives = 30/61 (49%)
Query: 157 DGKTPLYMAADYRSSDMVLALLENSTSASHEGPNGKTALHAAAMKSYFGKFSYTLSVGIS 216
+G+TPL++AA ++V LLE + + NG+T LH AA + L G
Sbjct: 1 NGRTPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGAD 60
Query: 217 I 217
+
Sbjct: 61 V 61
>pdb|1NFI|E Chain E, I-Kappa-B-AlphaNF-Kappa-B Complex
pdb|1NFI|F Chain F, I-Kappa-B-AlphaNF-Kappa-B Complex
Length = 213
Score = 44.7 bits (104), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 32/108 (29%), Positives = 51/108 (47%), Gaps = 12/108 (11%)
Query: 72 KGETPLHVAAKFGHSDIVRVLVERAKLLQHENEELESGIRTARHMIRMTNKEKNTALHEA 131
+G TPLH+A + G V VL + L S +++ TN +T LH A
Sbjct: 74 RGNTPLHLACEQGCLASVGVLTQSCT-----TPHLHS-------ILKATNYNGHTCLHLA 121
Query: 132 VCHQNVDVVEILTKEDPDYPYSANNDGKTPLYMAADYRSSDMVLALLE 179
H + +VE+L D +G+T L++A D ++ D+V LL+
Sbjct: 122 SIHGYLGIVELLVSLGADVNAQEPCNGRTALHLAVDLQNPDLVSLLLK 169
Score = 36.2 bits (82), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 29/109 (26%), Positives = 44/109 (40%), Gaps = 9/109 (8%)
Query: 116 MIRMTNKEKNTALHEAVCHQNVDVVEILTKEDPDYPYSANNDGKTPLYMAADYRSSDMVL 175
+ N + T LH AV ++ E L D P + G TPL++A + V
Sbjct: 34 FLNFQNNLQQTPLHLAVITNQPEIAEALLGAGCD-PELRDFRGNTPLHLACEQGCLASV- 91
Query: 176 ALLENSTSASH-------EGPNGKTALHAAAMKSYFGKFSYTLSVGISI 217
+L S + H NG T LH A++ Y G +S+G +
Sbjct: 92 GVLTQSCTTPHLHSILKATNYNGHTCLHLASIHGYLGIVELLVSLGADV 140
>pdb|2V4H|C Chain C, Nemo Cc2-Lz Domain - 1d5 Darpin Complex
pdb|2V4H|D Chain D, Nemo Cc2-Lz Domain - 1d5 Darpin Complex
Length = 136
Score = 44.3 bits (103), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 32/116 (27%), Positives = 56/116 (48%), Gaps = 19/116 (16%)
Query: 80 AAKFGHSDIVRVLVERAKLLQHENEELESGIRTARHMIRMTNKEKNTALHEAVCHQNVDV 139
AA+ G D VR+L+ + +++ NT LH A + ++++
Sbjct: 21 AARAGQDDEVRILMANGA------------------DVNANDRKGNTPLHLAADYDHLEI 62
Query: 140 VEILTKEDPDYPYSANNDGKTPLYMAADYRSSDMVLALLENSTSASHEGPNGKTAL 195
VE+L K D + +NDG TPL++AA + ++V LL++ + + GKTA
Sbjct: 63 VEVLLKHGADVN-AHDNDGSTPLHLAALFGHLEIVEVLLKHGADVNAQDKFGKTAF 117
Score = 37.7 bits (86), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 30/103 (29%), Positives = 50/103 (48%), Gaps = 21/103 (20%)
Query: 72 KGETPLHVAAKFGHSDIVRVLVER-AKLLQHENEELESGIRTARHMIRMTNKEKNTALHE 130
KG TPLH+AA + H +IV VL++ A + H+N + +T LH
Sbjct: 46 KGNTPLHLAADYDHLEIVEVLLKHGADVNAHDN-------------------DGSTPLHL 86
Query: 131 AVCHQNVDVVEILTKEDPDYPYSANNDGKTPLYMAADYRSSDM 173
A ++++VE+L K D + + GKT ++ D + D+
Sbjct: 87 AALFGHLEIVEVLLKHGADVN-AQDKFGKTAFDISIDNGNEDL 128
Score = 35.8 bits (81), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 21/75 (28%), Positives = 35/75 (46%), Gaps = 19/75 (25%)
Query: 158 GKTPLYMAADYRSSDMVLALLENSTSASHEGPNGKTALHAAAM----------------- 200
G TPL++AADY ++V LL++ + +G T LH AA+
Sbjct: 47 GNTPLHLAADYDHLEIVEVLLKHGADVNAHDNDGSTPLHLAALFGHLEIVEVLLKHGADV 106
Query: 201 --KSYFGKFSYTLSV 213
+ FGK ++ +S+
Sbjct: 107 NAQDKFGKTAFDISI 121
Score = 33.9 bits (76), Expect = 0.072, Method: Compositional matrix adjust.
Identities = 25/73 (34%), Positives = 35/73 (47%), Gaps = 18/73 (24%)
Query: 73 GETPLHVAAKFGHSDIVRVLVERAKLLQHENEELESGIRTARHMIRMTNKEKNTALHEAV 132
G TPLH+AA FGH +IV V LL+H + + +K TA ++
Sbjct: 80 GSTPLHLAALFGHLEIVEV------LLKHGAD------------VNAQDKFGKTAFDISI 121
Query: 133 CHQNVDVVEILTK 145
+ N D+ EIL K
Sbjct: 122 DNGNEDLAEILQK 134
>pdb|1QYM|A Chain A, X-Ray Structure Of Human Gankyrin
Length = 227
Score = 43.9 bits (102), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 32/100 (32%), Positives = 51/100 (51%), Gaps = 3/100 (3%)
Query: 104 EELESGIRTARHMIRMTNKEKNTALHEAVCHQNVDVVEILTKEDPDYPYSANND-GKTPL 162
EEL+ I + + T+++ TALH A + ++VE L + P + +D G +PL
Sbjct: 21 EELKESILADKSLATRTDQDSRTALHWACSAGHTEIVEFLLQ--LGVPVNDKDDAGWSPL 78
Query: 163 YMAADYRSSDMVLALLENSTSASHEGPNGKTALHAAAMKS 202
++AA ++V ALL + NG T LH AA K+
Sbjct: 79 HIAASAGRDEIVKALLGKGAQVNAVNQNGCTPLHYAASKN 118
Score = 39.3 bits (90), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 47/168 (27%), Positives = 69/168 (41%), Gaps = 29/168 (17%)
Query: 52 TKFVEEILEKCPLLLLQVNAK---GETPLHVAAKFGHSDIVRVLVERAKLLQHENEE--- 105
T+ VE +L+ L + VN K G +PLH+AA G +IV+ L+ + + N+
Sbjct: 54 TEIVEFLLQ----LGVPVNDKDDAGWSPLHIAASAGRDEIVKALLGKGAQVNAVNQNGCT 109
Query: 106 -LESGIRTARHMIRMTNKEKN-----------TALHEAVCHQNVDVVEILTKEDPDYPYS 153
L RH I + E TA+H A N+ ++ IL Y S
Sbjct: 110 PLHYAASKNRHEIAVMLLEGGANPDAKDHYEATAMHRAAAKGNLKMIHILLY----YKAS 165
Query: 154 AN---NDGKTPLYMAADYRSSDMVLALLENSTSASHEGPNGKTALHAA 198
N +G TPL++A D + L+ S E KT L A
Sbjct: 166 TNIQDTEGNTPLHLACDEERVEEAKLLVSQGASIYIENKEEKTPLQVA 213
>pdb|1UOH|A Chain A, Human Gankyrin
pdb|1TR4|A Chain A, Solution Structure Of Human Oncogenic Protein Gankyrin
Length = 226
Score = 43.9 bits (102), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 32/100 (32%), Positives = 51/100 (51%), Gaps = 3/100 (3%)
Query: 104 EELESGIRTARHMIRMTNKEKNTALHEAVCHQNVDVVEILTKEDPDYPYSANND-GKTPL 162
EEL+ I + + T+++ TALH A + ++VE L + P + +D G +PL
Sbjct: 20 EELKESILADKSLATRTDQDSRTALHWACSAGHTEIVEFLLQ--LGVPVNDKDDAGWSPL 77
Query: 163 YMAADYRSSDMVLALLENSTSASHEGPNGKTALHAAAMKS 202
++AA ++V ALL + NG T LH AA K+
Sbjct: 78 HIAASAGRDEIVKALLGKGAQVNAVNQNGCTPLHYAASKN 117
Score = 39.3 bits (90), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 47/168 (27%), Positives = 69/168 (41%), Gaps = 29/168 (17%)
Query: 52 TKFVEEILEKCPLLLLQVNAK---GETPLHVAAKFGHSDIVRVLVERAKLLQHENEE--- 105
T+ VE +L+ L + VN K G +PLH+AA G +IV+ L+ + + N+
Sbjct: 53 TEIVEFLLQ----LGVPVNDKDDAGWSPLHIAASAGRDEIVKALLGKGAQVNAVNQNGCT 108
Query: 106 -LESGIRTARHMIRMTNKEKN-----------TALHEAVCHQNVDVVEILTKEDPDYPYS 153
L RH I + E TA+H A N+ ++ IL Y S
Sbjct: 109 PLHYAASKNRHEIAVMLLEGGANPDAKDHYEATAMHRAAAKGNLKMIHILLY----YKAS 164
Query: 154 AN---NDGKTPLYMAADYRSSDMVLALLENSTSASHEGPNGKTALHAA 198
N +G TPL++A D + L+ S E KT L A
Sbjct: 165 TNIQDTEGNTPLHLACDEERVEEAKLLVSQGASIYIENKEEKTPLQVA 212
>pdb|1IKN|D Chain D, IkappabalphaNF-Kappab Complex
Length = 236
Score = 43.9 bits (102), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 32/110 (29%), Positives = 50/110 (45%), Gaps = 18/110 (16%)
Query: 72 KGETPLHVAAKFGHSDIVRVLVERAKLLQHENEELESGIRTARHM---IRMTNKEKNTAL 128
+G TPLH+A + G V VL + T H+ ++ TN +T L
Sbjct: 77 RGNTPLHLACEQGCLASVGVLTQSC---------------TTPHLHSILKATNYNGHTCL 121
Query: 129 HEAVCHQNVDVVEILTKEDPDYPYSANNDGKTPLYMAADYRSSDMVLALL 178
H A H + +VE+L D +G+T L++A D ++ D+V LL
Sbjct: 122 HLASIHGYLGIVELLVSLGADVNAQEPCNGRTALHLAVDLQNPDLVSLLL 171
Score = 35.4 bits (80), Expect = 0.025, Method: Compositional matrix adjust.
Identities = 28/109 (25%), Positives = 45/109 (41%), Gaps = 9/109 (8%)
Query: 116 MIRMTNKEKNTALHEAVCHQNVDVVEILTKEDPDYPYSANNDGKTPLYMAADYRSSDMVL 175
+ N + T LH AV ++ E L D P + G TPL++A + + +
Sbjct: 37 FLNFQNNLQQTPLHLAVITNQPEIAEALLGAGCD-PELRDFRGNTPLHLACE-QGCLASV 94
Query: 176 ALLENSTSASH-------EGPNGKTALHAAAMKSYFGKFSYTLSVGISI 217
+L S + H NG T LH A++ Y G +S+G +
Sbjct: 95 GVLTQSCTTPHLHSILKATNYNGHTCLHLASIHGYLGIVELLVSLGADV 143
>pdb|3TWU|A Chain A, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Mcl1
Length = 167
Score = 43.9 bits (102), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 45/175 (25%), Positives = 73/175 (41%), Gaps = 42/175 (24%)
Query: 2 DPNLFKAAAAGNLEPFKDIAREVIKRLLTAKTKNTILHVNIRSKESENASTKFVEEILEK 61
D L +AA AG++E +K+L T ++ VN R E ++ +
Sbjct: 11 DRQLLEAAKAGDVE--------TVKKLCTVQS------VNCRDIEGRQSTPLHFAAGYNR 56
Query: 62 CPLL--LLQ----VNAK---GETPLHVAAKFGHSDIVRVLVERAKLLQHENEELESGIRT 112
++ LLQ V+AK G PLH A +GH ++ +LV+
Sbjct: 57 VSVVEYLLQHGADVHAKDKGGLVPLHNACSYGHYEVAELLVKHGA--------------- 101
Query: 113 ARHMIRMTNKEKNTALHEAVCHQNVDVVEILTKEDPDYPYSANNDGKTPLYMAAD 167
++ + + K T LHEA ++ ++L + D P N DG TPL + D
Sbjct: 102 ---VVNVADLWKFTPLHEAAAKGKYEICKLLLQHGAD-PTKKNRDGNTPLDLVKD 152
>pdb|3TWR|A Chain A, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human 3bp2
pdb|3TWR|B Chain B, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human 3bp2
pdb|3TWR|C Chain C, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human 3bp2
pdb|3TWR|D Chain D, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human 3bp2
pdb|3TWS|A Chain A, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Terf1 (Chimeric Peptide)
pdb|3TWS|B Chain B, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Terf1 (Chimeric Peptide)
pdb|3TWS|C Chain C, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Terf1 (Chimeric Peptide)
pdb|3TWS|D Chain D, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Terf1 (Chimeric Peptide)
pdb|3TWT|A Chain A, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Mcl1 (Chimeric Peptide)
pdb|3TWT|B Chain B, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Mcl1 (Chimeric Peptide)
pdb|3TWT|C Chain C, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Mcl1 (Chimeric Peptide)
pdb|3TWT|D Chain D, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Mcl1 (Chimeric Peptide)
pdb|3TWV|A Chain A, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Numa1 (Chimeric Peptide)
pdb|3TWV|B Chain B, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Numa1 (Chimeric Peptide)
pdb|3TWV|C Chain C, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Numa1 (Chimeric Peptide)
pdb|3TWV|D Chain D, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Numa1 (Chimeric Peptide)
pdb|3TWW|A Chain A, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Lnpep (Chimeric Peptide)
pdb|3TWW|B Chain B, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Lnpep (Chimeric Peptide)
pdb|3TWX|A Chain A, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Fnbp1 (Chimeric Peptide)
pdb|3TWX|B Chain B, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Fnbp1 (Chimeric Peptide)
Length = 165
Score = 43.5 bits (101), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 45/175 (25%), Positives = 73/175 (41%), Gaps = 42/175 (24%)
Query: 2 DPNLFKAAAAGNLEPFKDIAREVIKRLLTAKTKNTILHVNIRSKESENASTKFVEEILEK 61
D L +AA AG++E +K+L T ++ VN R E ++ +
Sbjct: 9 DRQLLEAAKAGDVE--------TVKKLCTVQS------VNCRDIEGRQSTPLHFAAGYNR 54
Query: 62 CPLL--LLQ----VNAK---GETPLHVAAKFGHSDIVRVLVERAKLLQHENEELESGIRT 112
++ LLQ V+AK G PLH A +GH ++ +LV+
Sbjct: 55 VSVVEYLLQHGADVHAKDKGGLVPLHNACSYGHYEVAELLVKHGA--------------- 99
Query: 113 ARHMIRMTNKEKNTALHEAVCHQNVDVVEILTKEDPDYPYSANNDGKTPLYMAAD 167
++ + + K T LHEA ++ ++L + D P N DG TPL + D
Sbjct: 100 ---VVNVADLWKFTPLHEAAAKGKYEICKLLLQHGAD-PTKKNRDGNTPLDLVKD 150
>pdb|2P2C|P Chain P, Inhibition Of Caspase-2 By A Designed Ankyrin Repeat
Protein (Darpin)
pdb|2P2C|Q Chain Q, Inhibition Of Caspase-2 By A Designed Ankyrin Repeat
Protein (Darpin)
pdb|2P2C|R Chain R, Inhibition Of Caspase-2 By A Designed Ankyrin Repeat
Protein (Darpin)
pdb|2P2C|S Chain S, Inhibition Of Caspase-2 By A Designed Ankyrin Repeat
Protein (Darpin)
pdb|2P2C|T Chain T, Inhibition Of Caspase-2 By A Designed Ankyrin Repeat
Protein (Darpin)
pdb|2P2C|U Chain U, Inhibition Of Caspase-2 By A Designed Ankyrin Repeat
Protein (Darpin)
Length = 169
Score = 43.5 bits (101), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 36/123 (29%), Positives = 58/123 (47%), Gaps = 19/123 (15%)
Query: 73 GETPLHVAAKFGHSDIVRVLVERAKLLQHENEELESGIRTARHMIRMTNKEKNTALHEAV 132
G TPLH+AAK GH +IV VL++ + + T LH A
Sbjct: 47 GHTPLHLAAKTGHLEIVEVLLKYGA------------------DVNAWDNYGATPLHLAA 88
Query: 133 CHQNVDVVEILTKEDPDYPYSANNDGKTPLYMAADYRSSDMVLALLENSTSASHEGPNGK 192
+ ++++VE+L K D + + +G TPL++AA ++V LL+ + + GK
Sbjct: 89 DNGHLEIVEVLLKHGADVN-AKDYEGFTPLHLAAYDGHLEIVEVLLKYGADVNAQDKFGK 147
Query: 193 TAL 195
TA
Sbjct: 148 TAF 150
Score = 39.3 bits (90), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 36/138 (26%), Positives = 59/138 (42%), Gaps = 19/138 (13%)
Query: 80 AAKFGHSDIVRVLVERAKLLQHENEELESGIRTARHMIRMTNKEKNTALHEAVCHQNVDV 139
AA+ G D VR+L+ + T+ +T LH A ++++
Sbjct: 21 AARAGQDDEVRILMANGA------------------DVNATDWLGHTPLHLAAKTGHLEI 62
Query: 140 VEILTKEDPDYPYSANNDGKTPLYMAADYRSSDMVLALLENSTSASHEGPNGKTALHAAA 199
VE+L K D + +N G TPL++AAD ++V LL++ + + G T LH AA
Sbjct: 63 VEVLLKYGADVN-AWDNYGATPLHLAADNGHLEIVEVLLKHGADVNAKDYEGFTPLHLAA 121
Query: 200 MKSYFGKFSYTLSVGISI 217
+ L G +
Sbjct: 122 YDGHLEIVEVLLKYGADV 139
Score = 32.3 bits (72), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 30/102 (29%), Positives = 45/102 (44%), Gaps = 25/102 (24%)
Query: 47 SENASTKFVEEILEKCPLLLLQVNAK---GETPLHVAAKFGHSDIVRVLVERAKLLQHEN 103
++N + VE +L+ VNAK G TPLH+AA GH +IV VL++
Sbjct: 88 ADNGHLEIVEVLLKHGA----DVNAKDYEGFTPLHLAAYDGHLEIVEVLLKYGA------ 137
Query: 104 EELESGIRTARHMIRMTNKEKNTALHEAVCHQNVDVVEILTK 145
+ +K TA ++ + N D+ EIL K
Sbjct: 138 ------------DVNAQDKFGKTAFDISIDNGNEDLAEILQK 167
>pdb|3TWQ|A Chain A, Crystal Structure Of Arc4 From Human Tankyrase 2 (Apo
Form)
pdb|3TWQ|B Chain B, Crystal Structure Of Arc4 From Human Tankyrase 2 (Apo
Form)
Length = 175
Score = 43.5 bits (101), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 45/175 (25%), Positives = 73/175 (41%), Gaps = 42/175 (24%)
Query: 2 DPNLFKAAAAGNLEPFKDIAREVIKRLLTAKTKNTILHVNIRSKESENASTKFVEEILEK 61
D L +AA AG++E +K+L T ++ VN R E ++ +
Sbjct: 13 DRQLLEAAKAGDVE--------TVKKLCTVQS------VNCRDIEGRQSTPLHFAAGYNR 58
Query: 62 CPLL--LLQ----VNAK---GETPLHVAAKFGHSDIVRVLVERAKLLQHENEELESGIRT 112
++ LLQ V+AK G PLH A +GH ++ +LV+
Sbjct: 59 VSVVEYLLQHGADVHAKDKGGLVPLHNACSYGHYEVAELLVKHGA--------------- 103
Query: 113 ARHMIRMTNKEKNTALHEAVCHQNVDVVEILTKEDPDYPYSANNDGKTPLYMAAD 167
++ + + K T LHEA ++ ++L + D P N DG TPL + D
Sbjct: 104 ---VVNVADLWKFTPLHEAAAKGKYEICKLLLQHGAD-PTKKNRDGNTPLDLVKD 154
>pdb|4B93|B Chain B, Complex Of Vamp7 Cytoplasmic Domain With 2nd Ankyrin
Repeat Domain Of Varp
Length = 269
Score = 43.5 bits (101), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 44/164 (26%), Positives = 68/164 (41%), Gaps = 22/164 (13%)
Query: 59 LEKCPLLLLQVNA---KGETPLHVAAKFGHSDIVRVLVERAKLLQHENEELESGIRTARH 115
L K P L VN G +PLHVAA G +D++ +L++ +G R
Sbjct: 69 LAKVPASGLGVNVTSQDGSSPLHVAALHGRADLIPLLLKHGA---------NAGAR---- 115
Query: 116 MIRMTNKEKNTALHEAVCHQNVDVVEILTKEDPDYPYSANNDGKTPLYMAADYRSSDMVL 175
N ++ LH A + VV+ L + P + G TPL A ++V
Sbjct: 116 -----NADQAVPLHLACQQGHFQVVKCLLDSNAK-PNKKDLSGNTPLIYACSGGHHELVA 169
Query: 176 ALLENSTSASHEGPNGKTALHAAAMKSYFGKFSYTLSVGISILI 219
LL++ S + G TALH A ++ + L G S+ +
Sbjct: 170 LLLQHGASINASNNKGNTALHEAVIEKHVFVVELLLLHGASVQV 213
>pdb|2V5Q|C Chain C, Crystal Structure Of Wild-type Plk-1 Kinase Domain In
Complex With A Selective Darpin
pdb|2V5Q|D Chain D, Crystal Structure Of Wild-type Plk-1 Kinase Domain In
Complex With A Selective Darpin
Length = 167
Score = 43.5 bits (101), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 39/127 (30%), Positives = 60/127 (47%), Gaps = 19/127 (14%)
Query: 69 VNAKGETPLHVAAKFGHSDIVRVLVERAKLLQHENEELESGIRTARHMIRMTNKEKNTAL 128
V+ G TPLH+AA GH +IV V LL+H + + + T L
Sbjct: 43 VDNTGLTPLHLAAVSGHLEIVEV------LLKHGAD------------VDAADVYGFTPL 84
Query: 129 HEAVCHQNVDVVEILTKEDPDYPYSANNDGKTPLYMAADYRSSDMVLALLENSTSASHEG 188
H A ++++VE+L K D + + G TPL++AAD ++V LL+ + +
Sbjct: 85 HLAAMTGHLEIVEVLLKYGADVN-AFDMTGSTPLHLAADEGHLEIVEVLLKYGADVNAQD 143
Query: 189 PNGKTAL 195
GKTA
Sbjct: 144 KFGKTAF 150
Score = 32.7 bits (73), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 34/138 (24%), Positives = 55/138 (39%), Gaps = 19/138 (13%)
Query: 80 AAKFGHSDIVRVLVERAKLLQHENEELESGIRTARHMIRMTNKEKNTALHEAVCHQNVDV 139
AA+ G D VR+L+ + + T LH A ++++
Sbjct: 21 AARAGQDDEVRILIANGA------------------DVNAVDNTGLTPLHLAAVSGHLEI 62
Query: 140 VEILTKEDPDYPYSANNDGKTPLYMAADYRSSDMVLALLENSTSASHEGPNGKTALHAAA 199
VE+L K D +A+ G TPL++AA ++V LL+ + G T LH AA
Sbjct: 63 VEVLLKHGADVD-AADVYGFTPLHLAAMTGHLEIVEVLLKYGADVNAFDMTGSTPLHLAA 121
Query: 200 MKSYFGKFSYTLSVGISI 217
+ + L G +
Sbjct: 122 DEGHLEIVEVLLKYGADV 139
>pdb|2RFA|A Chain A, Crystal Structure Of The Mouse Trpv6 Ankyrin Repeat Domain
Length = 232
Score = 43.1 bits (100), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 43/143 (30%), Positives = 61/143 (42%), Gaps = 29/143 (20%)
Query: 68 QVNAKGETPLHVAAKFGHSDIVRVLVERAKLLQHENEELESGIRTARHMIRMTNK--EKN 125
Q A GET LH+AA + + + VL+E A L E MT++ E
Sbjct: 32 QRGAMGETALHIAALYDNLEAAMVLMEAAPELVFE---------------PMTSELYEGQ 76
Query: 126 TALHEAVCHQNVDVVEILTKEDPDY------------PYSANNDGKTPLYMAADYRSSDM 173
TALH AV +QNV++V L P++ G+ PL AA S ++
Sbjct: 77 TALHIAVINQNVNLVRALLARGASVSARATGSVFHYRPHNLIYYGEHPLSFAACVGSEEI 136
Query: 174 VLALLENSTSASHEGPNGKTALH 196
V L+E+ + G T LH
Sbjct: 137 VRLLIEHGADIRAQDSLGNTVLH 159
>pdb|2BKK|B Chain B, Crystal Structure Of Aminoglycoside Phosphotransferase Aph
(3')-Iiia In Complex With The Inhibitor Ar_3a
pdb|2BKK|D Chain D, Crystal Structure Of Aminoglycoside Phosphotransferase Aph
(3')-Iiia In Complex With The Inhibitor Ar_3a
Length = 169
Score = 42.4 bits (98), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 34/123 (27%), Positives = 57/123 (46%), Gaps = 19/123 (15%)
Query: 73 GETPLHVAAKFGHSDIVRVLVERAKLLQHENEELESGIRTARHMIRMTNKEKNTALHEAV 132
G TPLH+ GH +I+ VL++ A + ++K T LH A
Sbjct: 47 GITPLHLVVNNGHLEIIEVLLKYAA------------------DVNASDKSGWTPLHLAA 88
Query: 133 CHQNVDVVEILTKEDPDYPYSANNDGKTPLYMAADYRSSDMVLALLENSTSASHEGPNGK 192
++++VE+L K D + + G TPL++AA+ ++V LL+ + + GK
Sbjct: 89 YRGHLEIVEVLLKYGADVN-AMDYQGYTPLHLAAEDGHLEIVEVLLKYGADVNAQDKFGK 147
Query: 193 TAL 195
TA
Sbjct: 148 TAF 150
Score = 33.1 bits (74), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 33/120 (27%), Positives = 52/120 (43%), Gaps = 22/120 (18%)
Query: 57 EILEKCPLLLLQVNAK---GETPLHVAAKFGHSDIVRVLVERAKLLQHENEELESGIRTA 113
EI+E VNA G TPLH+AA GH +IV VL++
Sbjct: 61 EIIEVLLKYAADVNASDKSGWTPLHLAAYRGHLEIVEVLLKYGA---------------- 104
Query: 114 RHMIRMTNKEKNTALHEAVCHQNVDVVEILTKEDPDYPYSANNDGKTPLYMAADYRSSDM 173
+ + + T LH A ++++VE+L K D + + GKT ++ D + D+
Sbjct: 105 --DVNAMDYQGYTPLHLAAEDGHLEIVEVLLKYGADVN-AQDKFGKTAFDISIDNGNEDL 161
Score = 32.0 bits (71), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 28/93 (30%), Positives = 44/93 (47%), Gaps = 3/93 (3%)
Query: 126 TALHEAVCHQNVDVVEILTKEDPDYPYSANNDGKTPLYMAADYRSS-DMVLALLENSTSA 184
T LH V + +++++E+L K D S + G TPL++AA YR ++V LL+
Sbjct: 49 TPLHLVVNNGHLEIIEVLLKYAADVNAS-DKSGWTPLHLAA-YRGHLEIVEVLLKYGADV 106
Query: 185 SHEGPNGKTALHAAAMKSYFGKFSYTLSVGISI 217
+ G T LH AA + L G +
Sbjct: 107 NAMDYQGYTPLHLAAEDGHLEIVEVLLKYGADV 139
Score = 31.6 bits (70), Expect = 0.37, Method: Compositional matrix adjust.
Identities = 25/91 (27%), Positives = 42/91 (46%), Gaps = 18/91 (19%)
Query: 55 VEEILEKCPLLLLQVNAKGETPLHVAAKFGHSDIVRVLVERAKLLQHENEELESGIRTAR 114
+ E+L K + ++ +G TPLH+AA+ GH +IV VL++
Sbjct: 95 IVEVLLKYGADVNAMDYQGYTPLHLAAEDGHLEIVEVLLKYGA----------------- 137
Query: 115 HMIRMTNKEKNTALHEAVCHQNVDVVEILTK 145
+ +K TA ++ + N D+ EIL K
Sbjct: 138 -DVNAQDKFGKTAFDISIDNGNEDLAEILQK 167
>pdb|3AJI|A Chain A, Structure Of Gankyrin-S6atpase Photo-Cross-Linked
Site-Specifically, And Incoporated By Genetic Code
Expansion
pdb|3AJI|C Chain C, Structure Of Gankyrin-S6atpase Photo-Cross-Linked
Site-Specifically, And Incoporated By Genetic Code
Expansion
Length = 231
Score = 41.6 bits (96), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 31/100 (31%), Positives = 51/100 (51%), Gaps = 3/100 (3%)
Query: 104 EELESGIRTARHMIRMTNKEKNTALHEAVCHQNVDVVEILTKEDPDYPYSANND-GKTPL 162
+EL+ I + + T+++ TALH A + ++VE L + P + +D G +PL
Sbjct: 20 DELKERILADKSLATRTDQDSRTALHWACSAGHTEIVEFLLQ--LGVPVNDKDDAGWSPL 77
Query: 163 YMAADYRSSDMVLALLENSTSASHEGPNGKTALHAAAMKS 202
++AA ++V ALL + NG T LH AA K+
Sbjct: 78 HIAASAGXDEIVKALLVKGAHVNAVNQNGCTPLHYAASKN 117
Score = 37.7 bits (86), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 47/163 (28%), Positives = 66/163 (40%), Gaps = 25/163 (15%)
Query: 57 EILEKCPLLLLQVNAK---GETPLHVAAKFGHSDIVRVLVERAKLLQHENEE----LESG 109
EI+E L + VN K G +PLH+AA G +IV+ L+ + + N+ L
Sbjct: 54 EIVEFLLQLGVPVNDKDDAGWSPLHIAASAGXDEIVKALLVKGAHVNAVNQNGCTPLHYA 113
Query: 110 IRTARHMIRMTNKEKN-----------TALHEAVCHQNVDVVEILTKEDPDYPYSAN--- 155
RH I + E TA+H A N+ +V IL Y S N
Sbjct: 114 ASKNRHEIAVMLLEGGANPDAKDHYDATAMHRAAAKGNLKMVHILLF----YKASTNIQD 169
Query: 156 NDGKTPLYMAADYRSSDMVLALLENSTSASHEGPNGKTALHAA 198
+G TPL++A D + L+ S E KT L A
Sbjct: 170 TEGNTPLHLACDEERVEEAKFLVTQGASIYIENKEEKTPLQVA 212
>pdb|2DVW|A Chain A, Structure Of The Oncoprotein Gankyrin In Complex With S6
Atpase Of The 26s Proteasome
pdb|2DWZ|A Chain A, Structure Of The Oncoprotein Gankyrin In Complex With S6
Atpase Of The 26s Proteasome
pdb|2DWZ|C Chain C, Structure Of The Oncoprotein Gankyrin In Complex With S6
Atpase Of The 26s Proteasome
Length = 231
Score = 41.2 bits (95), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 31/100 (31%), Positives = 51/100 (51%), Gaps = 3/100 (3%)
Query: 104 EELESGIRTARHMIRMTNKEKNTALHEAVCHQNVDVVEILTKEDPDYPYSANND-GKTPL 162
+EL+ I + + T+++ TALH A + ++VE L + P + +D G +PL
Sbjct: 20 DELKERILADKSLATRTDQDSRTALHWACSAGHTEIVEFLLQ--LGVPVNDKDDAGWSPL 77
Query: 163 YMAADYRSSDMVLALLENSTSASHEGPNGKTALHAAAMKS 202
++AA ++V ALL + NG T LH AA K+
Sbjct: 78 HIAASAGRDEIVKALLVKGAHVNAVNQNGCTPLHYAASKN 117
Score = 38.1 bits (87), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 47/163 (28%), Positives = 66/163 (40%), Gaps = 25/163 (15%)
Query: 57 EILEKCPLLLLQVNAK---GETPLHVAAKFGHSDIVRVLVERAKLLQHENEE----LESG 109
EI+E L + VN K G +PLH+AA G +IV+ L+ + + N+ L
Sbjct: 54 EIVEFLLQLGVPVNDKDDAGWSPLHIAASAGRDEIVKALLVKGAHVNAVNQNGCTPLHYA 113
Query: 110 IRTARHMIRMTNKEKN-----------TALHEAVCHQNVDVVEILTKEDPDYPYSAN--- 155
RH I + E TA+H A N+ +V IL Y S N
Sbjct: 114 ASKNRHEIAVMLLEGGANPDAKDHYDATAMHRAAAKGNLKMVHILLF----YKASTNIQD 169
Query: 156 NDGKTPLYMAADYRSSDMVLALLENSTSASHEGPNGKTALHAA 198
+G TPL++A D + L+ S E KT L A
Sbjct: 170 TEGNTPLHLACDEERVEEAKFLVTQGASIYIENKEEKTPLQVA 212
Score = 31.6 bits (70), Expect = 0.35, Method: Compositional matrix adjust.
Identities = 33/138 (23%), Positives = 59/138 (42%), Gaps = 19/138 (13%)
Query: 65 LLLQVNAKGETPLHVAAKFGHSDIVRVLVERAKLLQHENEELESGIRTARHMIRMTNKEK 124
L + + T LH A GH++IV L++ + N++ ++G
Sbjct: 32 LATRTDQDSRTALHWACSAGHTEIVEFLLQLGVPV---NDKDDAGW-------------- 74
Query: 125 NTALHEAVCHQNVDVVEILTKEDPDYPYSANNDGKTPLYMAADYRSSDMVLALLENSTSA 184
+ LH A ++V+ L + + + N +G TPL+ AA ++ + LLE +
Sbjct: 75 -SPLHIAASAGRDEIVKALLVKGA-HVNAVNQNGCTPLHYAASKNRHEIAVMLLEGGANP 132
Query: 185 SHEGPNGKTALHAAAMKS 202
+ TA+H AA K
Sbjct: 133 DAKDHYDATAMHRAAAKG 150
>pdb|1K1B|A Chain A, Crystal Structure Of The Ankyrin Repeat Domain Of Bcl-3: A
Unique Member Of The Ikappab Protein Family
pdb|1K1A|A Chain A, Crystal Structure Of The Ankyrin Repeat Domain Of Bcl-3: A
Unique Member Of The Ikappab Protein Family
Length = 241
Score = 41.2 bits (95), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 38/130 (29%), Positives = 59/130 (45%), Gaps = 19/130 (14%)
Query: 73 GETPLHVAAKFGHSDIVRVLVERAKLLQHENEELESGIRTARHMIRMTNKEKNTALHEAV 132
G+TPLH+A G+ V LV L Q EL+ + N + T LH AV
Sbjct: 9 GDTPLHIAVVQGNLPAVHRLV---NLFQQGGRELD-----------IYNNLRQTPLHLAV 54
Query: 133 CHQNVDVVEILTKEDPDYPYSANNDGKTPLYMAADYRSSDMVLALLENSTSASHE----G 188
VV +L P + + G+T ++A ++RS + ALL+++ + +
Sbjct: 55 ITTLPSVVRLLVTAGAS-PMALDRHGQTAAHLACEHRSPTCLRALLDSAAPGTLDLEARN 113
Query: 189 PNGKTALHAA 198
+G TALH A
Sbjct: 114 YDGLTALHVA 123
Score = 36.6 bits (83), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 24/84 (28%), Positives = 43/84 (51%)
Query: 121 NKEKNTALHEAVCHQNVDVVEILTKEDPDYPYSANNDGKTPLYMAADYRSSDMVLALLEN 180
N + TALH AV + + V++L + D G++PL A + S MV LL++
Sbjct: 113 NYDGLTALHVAVNTECQETVQLLLERGADIDAVDIKSGRSPLIHAVENNSLSMVQLLLQH 172
Query: 181 STSASHEGPNGKTALHAAAMKSYF 204
+ + + +G +ALH+A+ +
Sbjct: 173 GANVNAQMYSGSSALHSASGRGLL 196
>pdb|1YYH|A Chain A, Crystal Structure Of The Human Notch 1 Ankyrin Domain
pdb|1YYH|B Chain B, Crystal Structure Of The Human Notch 1 Ankyrin Domain
Length = 253
Score = 40.0 bits (92), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 40/153 (26%), Positives = 64/153 (41%), Gaps = 19/153 (12%)
Query: 44 SKESENASTKFVEEILEKCPLLLLQVNAKGETPLHVAAKFGHSDIVRVLVERAKLLQHEN 103
S+E E+A + + + + L Q + GET LH+AA++ SD + L+E
Sbjct: 29 SEEEEDAPA-VISDFIYQGASLHNQTDRTGETALHLAARYSRSDAAKRLLE--------- 78
Query: 104 EELESGIRTARHMIRMTNKEKNTALHEAVCHQNVDVVEILTKEDPDYPYSANNDGKTPLY 163
A + + T LH AV V +IL + + +DG TPL
Sbjct: 79 ---------ASADANIQDNMGRTPLHAAVSADAQGVFQILIRNRATDLDARMHDGTTPLI 129
Query: 164 MAADYRSSDMVLALLENSTSASHEGPNGKTALH 196
+AA M+ L+ + + GK+ALH
Sbjct: 130 LAARLAVEGMLEDLINSHADVNAVDDLGKSALH 162
Score = 36.2 bits (82), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 21/50 (42%), Positives = 27/50 (54%)
Query: 158 GKTPLYMAADYRSSDMVLALLENSTSASHEGPNGKTALHAAAMKSYFGKF 207
G+T L++AA Y SD LLE S A+ + G+T LHAA G F
Sbjct: 57 GETALHLAARYSRSDAAKRLLEASADANIQDNMGRTPLHAAVSADAQGVF 106
>pdb|2F8X|K Chain K, Crystal Structure Of Activated Notch, Csl And Maml On
Hes-1 Promoter Dna Sequence
pdb|3NBN|B Chain B, Crystal Structure Of A Dimer Of Notch Transcription
Complex Trimers On Hes1 Dna
pdb|3NBN|E Chain E, Crystal Structure Of A Dimer Of Notch Transcription
Complex Trimers On Hes1 Dna
pdb|3V79|K Chain K, Structure Of Human Notch1 Transcription Complex Including
Csl, Ram, Ank, And Maml-1 On Hes-1 Promoter Dna Sequence
Length = 256
Score = 40.0 bits (92), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 40/153 (26%), Positives = 64/153 (41%), Gaps = 19/153 (12%)
Query: 44 SKESENASTKFVEEILEKCPLLLLQVNAKGETPLHVAAKFGHSDIVRVLVERAKLLQHEN 103
S+E E+A + + + + L Q + GET LH+AA++ SD + L+E
Sbjct: 30 SEEEEDAPA-VISDFIYQGASLHNQTDRTGETALHLAARYSRSDAAKRLLE--------- 79
Query: 104 EELESGIRTARHMIRMTNKEKNTALHEAVCHQNVDVVEILTKEDPDYPYSANNDGKTPLY 163
A + + T LH AV V +IL + + +DG TPL
Sbjct: 80 ---------ASADANIQDNMGRTPLHAAVSADAQGVFQILIRNRATDLDARMHDGTTPLI 130
Query: 164 MAADYRSSDMVLALLENSTSASHEGPNGKTALH 196
+AA M+ L+ + + GK+ALH
Sbjct: 131 LAARLAVEGMLEDLINSHADVNAVDDLGKSALH 163
Score = 35.8 bits (81), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 21/50 (42%), Positives = 27/50 (54%)
Query: 158 GKTPLYMAADYRSSDMVLALLENSTSASHEGPNGKTALHAAAMKSYFGKF 207
G+T L++AA Y SD LLE S A+ + G+T LHAA G F
Sbjct: 58 GETALHLAARYSRSDAAKRLLEASADANIQDNMGRTPLHAAVSADAQGVF 107
>pdb|2DZN|A Chain A, Crystal Structure Analysis Of Yeast Nas6p Complexed With
The Proteasome Subunit, Rpt3
pdb|2DZN|C Chain C, Crystal Structure Analysis Of Yeast Nas6p Complexed With
The Proteasome Subunit, Rpt3
pdb|2DZN|E Chain E, Crystal Structure Analysis Of Yeast Nas6p Complexed With
The Proteasome Subunit, Rpt3
pdb|2DZO|A Chain A, Crystal Structure Analysis Of Yeast Nas6p Complexed With
The Proteasome Subunit, Rpt3
pdb|2DZO|C Chain C, Crystal Structure Analysis Of Yeast Nas6p Complexed With
The Proteasome Subunit, Rpt3
Length = 228
Score = 40.0 bits (92), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 39/147 (26%), Positives = 62/147 (42%), Gaps = 18/147 (12%)
Query: 55 VEEILEKCPLLLLQVNAKGETPLHVAAKFGHSDIVRVLVERAKLLQHENEELESGIRTAR 114
V+E+L P LLLQ + G PLH + F +I L+ + + + ++ +SG
Sbjct: 18 VQELLHSKPSLLLQKDQDGRIPLHWSVSFQAHEITSFLLSKMENVNLDDYPDDSGW---- 73
Query: 115 HMIRMTNKEKNTALHEAVCHQNVDVVEILTKE--DPDYPYSANNDGKTPLYMAADYRSSD 172
T H A N++VV+ L PD N G T L++A + +
Sbjct: 74 -----------TPFHIACSVGNLEVVKSLYDRPLKPDLN-KITNQGVTCLHLAVGKKWFE 121
Query: 173 MVLALLENSTSASHEGPNGKTALHAAA 199
+ L+EN S + + LH AA
Sbjct: 122 VSQFLIENGASVRIKDKFNQIPLHRAA 148
Score = 30.4 bits (67), Expect = 0.89, Method: Compositional matrix adjust.
Identities = 18/78 (23%), Positives = 34/78 (43%), Gaps = 3/78 (3%)
Query: 125 NTALHEAVCHQNVDVVEILTKEDPDYPYSANNDGKTPLYMAADYRSSDM---VLALLENS 181
N LH+A V+ L P + DG+ PL+ + +++ ++ +L+ +EN
Sbjct: 3 NYPLHQACMENEFFKVQELLHSKPSLLLQKDQDGRIPLHWSVSFQAHEITSFLLSKMENV 62
Query: 182 TSASHEGPNGKTALHAAA 199
+ +G T H A
Sbjct: 63 NLDDYPDDSGWTPFHIAC 80
>pdb|1IXV|A Chain A, Crystal Structure Analysis Of Homolog Of Oncoprotein
Gankyrin, An Interactor Of Rb And Cdk46
Length = 231
Score = 40.0 bits (92), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 39/147 (26%), Positives = 62/147 (42%), Gaps = 18/147 (12%)
Query: 55 VEEILEKCPLLLLQVNAKGETPLHVAAKFGHSDIVRVLVERAKLLQHENEELESGIRTAR 114
V+E+L P LLLQ + G PLH + F +I L+ + + + ++ +SG
Sbjct: 18 VQELLHSKPSLLLQKDQDGRIPLHWSVSFQAHEITSFLLSKMENVNLDDYPDDSGW---- 73
Query: 115 HMIRMTNKEKNTALHEAVCHQNVDVVEILTKE--DPDYPYSANNDGKTPLYMAADYRSSD 172
T H A N++VV+ L PD N G T L++A + +
Sbjct: 74 -----------TPFHIACSVGNLEVVKSLYDRPLKPDLN-KITNQGVTCLHLAVGKKWFE 121
Query: 173 MVLALLENSTSASHEGPNGKTALHAAA 199
+ L+EN S + + LH AA
Sbjct: 122 VSQFLIENGASVRIKDKFNQIPLHRAA 148
Score = 30.0 bits (66), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 18/78 (23%), Positives = 34/78 (43%), Gaps = 3/78 (3%)
Query: 125 NTALHEAVCHQNVDVVEILTKEDPDYPYSANNDGKTPLYMAADYRSSDM---VLALLENS 181
N LH+A V+ L P + DG+ PL+ + +++ ++ +L+ +EN
Sbjct: 3 NYPLHQACMENEFFKVQELLHSKPSLLLQKDQDGRIPLHWSVSFQAHEITSFLLSKMENV 62
Query: 182 TSASHEGPNGKTALHAAA 199
+ +G T H A
Sbjct: 63 NLDDYPDDSGWTPFHIAC 80
>pdb|1WG0|A Chain A, Structural Comparison Of Nas6p Protein Structures In Two
Different Crystal Forms
Length = 243
Score = 39.7 bits (91), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 39/147 (26%), Positives = 62/147 (42%), Gaps = 18/147 (12%)
Query: 55 VEEILEKCPLLLLQVNAKGETPLHVAAKFGHSDIVRVLVERAKLLQHENEELESGIRTAR 114
V+E+L P LLLQ + G PLH + F +I L+ + + + ++ +SG
Sbjct: 18 VQELLHSKPSLLLQKDQDGRIPLHWSVSFQAHEITSFLLSKMENVNLDDYPDDSGW---- 73
Query: 115 HMIRMTNKEKNTALHEAVCHQNVDVVEILTKE--DPDYPYSANNDGKTPLYMAADYRSSD 172
T H A N++VV+ L PD N G T L++A + +
Sbjct: 74 -----------TPFHIACSVGNLEVVKSLYDRPLKPDLN-KITNQGVTCLHLAVGKKWFE 121
Query: 173 MVLALLENSTSASHEGPNGKTALHAAA 199
+ L+EN S + + LH AA
Sbjct: 122 VSQFLIENGASVRIKDKFNQIPLHRAA 148
Score = 30.0 bits (66), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 18/78 (23%), Positives = 34/78 (43%), Gaps = 3/78 (3%)
Query: 125 NTALHEAVCHQNVDVVEILTKEDPDYPYSANNDGKTPLYMAADYRSSDM---VLALLENS 181
N LH+A V+ L P + DG+ PL+ + +++ ++ +L+ +EN
Sbjct: 3 NYPLHQACMENEFFKVQELLHSKPSLLLQKDQDGRIPLHWSVSFQAHEITSFLLSKMENV 62
Query: 182 TSASHEGPNGKTALHAAA 199
+ +G T H A
Sbjct: 63 NLDDYPDDSGWTPFHIAC 80
>pdb|3F6Q|A Chain A, Crystal Structure Of Integrin-Linked Kinase Ankyrin Repeat
Domain In Complex With Pinch1 Lim1 Domain
pdb|3IXE|A Chain A, Structural Basis Of Competition Between Pinch1 And Pinch2
For Binding To The Ankyrin Repeat Domain Of
Integrin-Linked Kinase
Length = 179
Score = 39.7 bits (91), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 33/120 (27%), Positives = 52/120 (43%), Gaps = 19/120 (15%)
Query: 66 LLQVNAKGETPLHVAAKFGHSDIVRVLVERAKLLQHENEELESGIRTARHMIRMTNKEKN 125
L Q + G +PLH A + G S +V +L+ +R AR I + N+ +
Sbjct: 32 LNQGDDHGFSPLHWACREGRSAVVEMLI----------------MRGAR--INVMNRGDD 73
Query: 126 TALHEAVCHQNVDVVEILTKEDPDYPYSANNDGKTPLYMAADYRSSDMVLALLENSTSAS 185
T LH A H + D+V+ L + D + N G PL+ A + + L+ N S
Sbjct: 74 TPLHLAASHGHRDIVQKLLQYKADI-NAVNEHGNVPLHYACFWGQDQVAEDLVANGALVS 132
>pdb|2KBX|A Chain A, Solution Structure Of Ilk-Pinch Complex
Length = 171
Score = 39.3 bits (90), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 33/120 (27%), Positives = 52/120 (43%), Gaps = 19/120 (15%)
Query: 66 LLQVNAKGETPLHVAAKFGHSDIVRVLVERAKLLQHENEELESGIRTARHMIRMTNKEKN 125
L Q + G +PLH A + G S +V +L+ +R AR I + N+ +
Sbjct: 27 LNQGDDHGFSPLHWACREGRSAVVEMLI----------------MRGAR--INVMNRGDD 68
Query: 126 TALHEAVCHQNVDVVEILTKEDPDYPYSANNDGKTPLYMAADYRSSDMVLALLENSTSAS 185
T LH A H + D+V+ L + D + N G PL+ A + + L+ N S
Sbjct: 69 TPLHLAASHGHRDIVQKLLQYKADI-NAVNEHGNVPLHYACFWGQDQVAEDLVANGALVS 127
>pdb|1AWC|B Chain B, Mouse Gabp AlphaBETA DOMAIN BOUND TO DNA
Length = 153
Score = 39.3 bits (90), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 31/99 (31%), Positives = 50/99 (50%), Gaps = 19/99 (19%)
Query: 75 TPLHVAAKFGHSDIVRVLVERAKLLQHENEELESGIRTARHMIRMTNKEKNTALHEAVCH 134
TPLH+AA GH++IV VL++ + A+ M++M TALH A H
Sbjct: 69 TPLHMAASEGHANIVEVLLKHGADVN------------AKDMLKM------TALHWATEH 110
Query: 135 QNVDVVEILTKEDPDYPYSANNDGKTPLYMAADYRSSDM 173
+ +VVE+L K D ++ + KT ++ D + D+
Sbjct: 111 NHQEVVELLIKYGADV-HTQSKFCKTAFDISIDNGNEDL 148
>pdb|2L6B|A Chain A, Nrc Consensus Ankyrin Repeat Protein Solution Structure
Length = 115
Score = 39.3 bits (90), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 25/72 (34%), Positives = 41/72 (56%), Gaps = 12/72 (16%)
Query: 28 LLTAKTKNTILHVNIRSKESENASTKFVEEILEKCPLLLLQVNAK---GETPLHVAAKFG 84
+ +K NT LH ++N + V+++L K VNA+ G TPLH+AAK G
Sbjct: 3 MWGSKDGNTPLH-----NAAKNGHAEEVKKLLSKGA----DVNARSKDGNTPLHLAAKNG 53
Query: 85 HSDIVRVLVERA 96
H++IV++L+ +
Sbjct: 54 HAEIVKLLLAKG 65
Score = 31.2 bits (69), Expect = 0.53, Method: Compositional matrix adjust.
Identities = 25/90 (27%), Positives = 42/90 (46%), Gaps = 3/90 (3%)
Query: 115 HMIRMTNKEKNTALHEAVCHQNVDVVEILTKEDPDYPYSANNDGKTPLYMAADYRSSDMV 174
HM +K+ NT LH A + + + V+ L + D + + DG TPL++AA +++V
Sbjct: 2 HM--WGSKDGNTPLHNAAKNGHAEEVKKLLSKGADV-NARSKDGNTPLHLAAKNGHAEIV 58
Query: 175 LALLENSTSASHEGPNGKTALHAAAMKSYF 204
LL + +G T H A +
Sbjct: 59 KLLLAKGADVNARSKDGNTPEHLAKKNGHH 88
>pdb|2F8Y|A Chain A, Crystal Structure Of Human Notch1 Ankyrin Repeats To 1.55a
Resolution.
pdb|2F8Y|B Chain B, Crystal Structure Of Human Notch1 Ankyrin Repeats To 1.55a
Resolution
Length = 223
Score = 38.9 bits (89), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 35/129 (27%), Positives = 53/129 (41%), Gaps = 18/129 (13%)
Query: 68 QVNAKGETPLHVAAKFGHSDIVRVLVERAKLLQHENEELESGIRTARHMIRMTNKEKNTA 127
Q + GET LH+AA++ SD + L+E A + + T
Sbjct: 20 QTDRTGETALHLAARYSRSDAAKRLLE------------------ASADANIQDNMGRTP 61
Query: 128 LHEAVCHQNVDVVEILTKEDPDYPYSANNDGKTPLYMAADYRSSDMVLALLENSTSASHE 187
LH AV V +IL + + +DG TPL +AA M+ L+ + +
Sbjct: 62 LHAAVSADAQGVFQILIRNRATDLDARMHDGTTPLILAARLAVEGMLEDLINSHADVNAV 121
Query: 188 GPNGKTALH 196
GK+ALH
Sbjct: 122 DDLGKSALH 130
Score = 36.2 bits (82), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 21/50 (42%), Positives = 27/50 (54%)
Query: 158 GKTPLYMAADYRSSDMVLALLENSTSASHEGPNGKTALHAAAMKSYFGKF 207
G+T L++AA Y SD LLE S A+ + G+T LHAA G F
Sbjct: 25 GETALHLAARYSRSDAAKRLLEASADANIQDNMGRTPLHAAVSADAQGVF 74
>pdb|2QC9|A Chain A, Mouse Notch 1 Ankyrin Repeat Intracellular Domain
pdb|2QC9|B Chain B, Mouse Notch 1 Ankyrin Repeat Intracellular Domain
Length = 210
Score = 38.5 bits (88), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 35/129 (27%), Positives = 53/129 (41%), Gaps = 18/129 (13%)
Query: 68 QVNAKGETPLHVAAKFGHSDIVRVLVERAKLLQHENEELESGIRTARHMIRMTNKEKNTA 127
Q + GET LH+AA++ SD + L+E A + + T
Sbjct: 17 QTDRTGETALHLAARYSRSDAAKRLLE------------------ASADAXIQDNMGRTP 58
Query: 128 LHEAVCHQNVDVVEILTKEDPDYPYSANNDGKTPLYMAADYRSSDMVLALLENSTSASHE 187
LH AV V +IL + + +DG TPL +AA M+ L+ + +
Sbjct: 59 LHAAVSADAQGVFQILLRNRATDLDARMHDGTTPLILAARLALEGMLEDLINSHADVNAV 118
Query: 188 GPNGKTALH 196
GK+ALH
Sbjct: 119 DDLGKSALH 127
Score = 36.2 bits (82), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 22/54 (40%), Positives = 27/54 (50%)
Query: 158 GKTPLYMAADYRSSDMVLALLENSTSASHEGPNGKTALHAAAMKSYFGKFSYTL 211
G+T L++AA Y SD LLE S A + G+T LHAA G F L
Sbjct: 22 GETALHLAARYSRSDAAKRLLEASADAXIQDNMGRTPLHAAVSADAQGVFQILL 75
>pdb|4GRG|A Chain A, Crystal Structure Of Ige Complexed With E2_79, An Anti-Ige
Inhibitor
pdb|4GRG|B Chain B, Crystal Structure Of Ige Complexed With E2_79, An Anti-Ige
Inhibitor
Length = 135
Score = 38.1 bits (87), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 28/101 (27%), Positives = 44/101 (43%), Gaps = 19/101 (18%)
Query: 73 GETPLHVAAKFGHSDIVRVLVERAKLLQHENEELESGIRTARHMIRMTNKEKNTALHEAV 132
G TPLH+AA GH +IV VL++ + T T LH A
Sbjct: 47 GHTPLHLAAMLGHLEIVEVLLKNGA------------------DVNATGNTGRTPLHLAA 88
Query: 133 CHQNVDVVEILTKEDPDYPYSANNDGKTPLYMAADYRSSDM 173
++++VE+L K D + + GKT ++ D + D+
Sbjct: 89 WADHLEIVEVLLKHGADVN-AQDKFGKTAFDISIDNGNEDL 128
Score = 37.4 bits (85), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 33/111 (29%), Positives = 56/111 (50%), Gaps = 6/111 (5%)
Query: 86 SDIVRVLVERAKLLQHENEELESGIRTARHM-IRMTNKEKNTALHEAVCHQNVDVVEILT 144
SD+ + L+E A+ Q + E I TA + + +T LH A ++++VE+L
Sbjct: 12 SDLGKKLLEAARAGQDD----EVRILTANGADVNANDYWGHTPLHLAAMLGHLEIVEVLL 67
Query: 145 KEDPDYPYSANNDGKTPLYMAADYRSSDMVLALLENSTSASHEGPNGKTAL 195
K D + N G+TPL++AA ++V LL++ + + GKTA
Sbjct: 68 KNGADVNATGNT-GRTPLHLAAWADHLEIVEVLLKHGADVNAQDKFGKTAF 117
Score = 35.0 bits (79), Expect = 0.033, Method: Compositional matrix adjust.
Identities = 25/68 (36%), Positives = 35/68 (51%), Gaps = 3/68 (4%)
Query: 138 DVVEILTKEDPDYPYSANN-DGKTPLYMAADYRSSDMVLALLENSTSASHEGPNGKTALH 196
D V ILT D +AN+ G TPL++AA ++V LL+N + G G+T LH
Sbjct: 28 DEVRILTANGADV--NANDYWGHTPLHLAAMLGHLEIVEVLLKNGADVNATGNTGRTPLH 85
Query: 197 AAAMKSYF 204
AA +
Sbjct: 86 LAAWADHL 93
>pdb|1OY3|D Chain D, Crystal Structure Of An IkbbetaNF-Kb P65 Homodimer Complex
Length = 282
Score = 38.1 bits (87), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 27/100 (27%), Positives = 50/100 (50%), Gaps = 1/100 (1%)
Query: 102 ENEELESGIRTARHMIRMTNKEKNTALHEAVCHQNVDVVEILTKEDPDYPYSANNDGKTP 161
ENEE E R + N + +T LH AV H++ ++V +L D G+TP
Sbjct: 137 ENEE-EPRDEDWRLQLEAENYDGHTPLHVAVIHKDAEMVRLLRDAGADLNKPEPTCGRTP 195
Query: 162 LYMAADYRSSDMVLALLENSTSASHEGPNGKTALHAAAMK 201
L++A + +++ ++ LL+ + G+T L +A ++
Sbjct: 196 LHLAVEAQAASVLELLLKAGADPTARMYGGRTPLGSALLR 235
Score = 29.3 bits (64), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 31/96 (32%), Positives = 40/96 (41%), Gaps = 18/96 (18%)
Query: 70 NAKGETPLHVAAKFGHSDIVRVLVERAKLLQHENEELESGIRTARHMIRMTNKEKNTALH 129
N G TPLHVA +++VR+L + L E G T LH
Sbjct: 155 NYDGHTPLHVAVIHKDAEMVRLLRDAGADLN--KPEPTCG---------------RTPLH 197
Query: 130 EAVCHQNVDVVEILTKEDPDYPYSANNDGKTPLYMA 165
AV Q V+E+L K D P + G+TPL A
Sbjct: 198 LAVEAQAASVLELLLKAGAD-PTARMYGGRTPLGSA 232
>pdb|1K3Z|D Chain D, X-Ray Crystal Structure Of The IkbbNF-Kb P65 Homodimer
Complex
Length = 282
Score = 38.1 bits (87), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 27/100 (27%), Positives = 50/100 (50%), Gaps = 1/100 (1%)
Query: 102 ENEELESGIRTARHMIRMTNKEKNTALHEAVCHQNVDVVEILTKEDPDYPYSANNDGKTP 161
ENEE E R + N + +T LH AV H++ ++V +L D G+TP
Sbjct: 137 ENEE-EPRDEDWRLQLEAENYDGHTPLHVAVIHKDAEMVRLLRDAGADLNKPEPTCGRTP 195
Query: 162 LYMAADYRSSDMVLALLENSTSASHEGPNGKTALHAAAMK 201
L++A + +++ ++ LL+ + G+T L +A ++
Sbjct: 196 LHLAVEAQAASVLELLLKAGADPTARMYGGRTPLGSALLR 235
Score = 29.3 bits (64), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 31/96 (32%), Positives = 40/96 (41%), Gaps = 18/96 (18%)
Query: 70 NAKGETPLHVAAKFGHSDIVRVLVERAKLLQHENEELESGIRTARHMIRMTNKEKNTALH 129
N G TPLHVA +++VR+L + L E G T LH
Sbjct: 155 NYDGHTPLHVAVIHKDAEMVRLLRDAGADLN--KPEPTCG---------------RTPLH 197
Query: 130 EAVCHQNVDVVEILTKEDPDYPYSANNDGKTPLYMA 165
AV Q V+E+L K D P + G+TPL A
Sbjct: 198 LAVEAQAASVLELLLKAGAD-PTARMYGGRTPLGSA 232
>pdb|3ZUV|B Chain B, Crystal Structure Of A Designed Selected Ankyrin Repeat
Protein In Complex With The Phosphorylated Map Kinase
Erk2
pdb|3ZUV|D Chain D, Crystal Structure Of A Designed Selected Ankyrin Repeat
Protein In Complex With The Phosphorylated Map Kinase
Erk2
Length = 136
Score = 37.4 bits (85), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 31/105 (29%), Positives = 50/105 (47%), Gaps = 19/105 (18%)
Query: 69 VNAKGETPLHVAAKFGHSDIVRVLVERAKLLQHENEELESGIRTARHMIRMTNKEKNTAL 128
++ G TPLH+AA+ GH +IV VL++ + N E GI T L
Sbjct: 43 LDEDGLTPLHLAAQLGHLEIVEVLLKYGADV---NAEDNFGI---------------TPL 84
Query: 129 HEAVCHQNVDVVEILTKEDPDYPYSANNDGKTPLYMAADYRSSDM 173
H A ++++VE+L K D + + GKT ++ D + D+
Sbjct: 85 HLAAIRGHLEIVEVLLKHGADVN-AQDKFGKTAFDISIDNGNEDL 128
Score = 32.0 bits (71), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 22/67 (32%), Positives = 33/67 (49%), Gaps = 1/67 (1%)
Query: 138 DVVEILTKEDPDYPYSANNDGKTPLYMAADYRSSDMVLALLENSTSASHEGPNGKTALHA 197
D V IL D + + DG TPL++AA ++V LL+ + E G T LH
Sbjct: 28 DEVRILMANGADVN-ALDEDGLTPLHLAAQLGHLEIVEVLLKYGADVNAEDNFGITPLHL 86
Query: 198 AAMKSYF 204
AA++ +
Sbjct: 87 AAIRGHL 93
Score = 31.6 bits (70), Expect = 0.38, Method: Compositional matrix adjust.
Identities = 30/116 (25%), Positives = 52/116 (44%), Gaps = 19/116 (16%)
Query: 80 AAKFGHSDIVRVLVERAKLLQHENEELESGIRTARHMIRMTNKEKNTALHEAVCHQNVDV 139
AA+ G D VR+L+ + +++ T LH A ++++
Sbjct: 21 AARAGQDDEVRILMANGA------------------DVNALDEDGLTPLHLAAQLGHLEI 62
Query: 140 VEILTKEDPDYPYSANNDGKTPLYMAADYRSSDMVLALLENSTSASHEGPNGKTAL 195
VE+L K D + +N G TPL++AA ++V LL++ + + GKTA
Sbjct: 63 VEVLLKYGADVN-AEDNFGITPLHLAAIRGHLEIVEVLLKHGADVNAQDKFGKTAF 117
>pdb|3V30|A Chain A, Crystal Structure Of The Peptide Bound Complex Of The
Ankyrin Repeat Domains Of Human Rfxank
Length = 172
Score = 37.0 bits (84), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 42/150 (28%), Positives = 61/150 (40%), Gaps = 21/150 (14%)
Query: 55 VEEILEKCPLLLLQVNAKGETPLHVAAKFGHSDIVRVLVERAKLLQHENEELESGIRTAR 114
++E L K L+ + + +G TPL A+ FG + VR L+E
Sbjct: 18 LKEHLRKGDNLVNKPDERGFTPLIWASAFGEIETVRFLLEWG---------------ADP 62
Query: 115 HMIRMTNKEKNTALHEAVCHQNVDVVEILTKEDPDYP-YSANNDGKTPLYMAADYRSSDM 173
H++ KE+ +AL A D+V +L + D D Y N G TPL A
Sbjct: 63 HILA---KERESALSLASTGGYTDIVGLLLERDVDINIYDWN--GGTPLLYAVRGNHVKC 117
Query: 174 VLALLENSTSASHEGPNGKTALHAAAMKSY 203
V ALL + E +G T + A Y
Sbjct: 118 VEALLARGADLTTEADSGYTPMDLAVALGY 147
>pdb|3UXG|A Chain A, Crystal Structure Of Rfxank
Length = 172
Score = 37.0 bits (84), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 42/150 (28%), Positives = 61/150 (40%), Gaps = 21/150 (14%)
Query: 55 VEEILEKCPLLLLQVNAKGETPLHVAAKFGHSDIVRVLVERAKLLQHENEELESGIRTAR 114
++E L K L+ + + +G TPL A+ FG + VR L+E
Sbjct: 18 LKEHLRKGDNLVNKPDERGFTPLIWASAFGEIETVRFLLEWG---------------ADP 62
Query: 115 HMIRMTNKEKNTALHEAVCHQNVDVVEILTKEDPDYP-YSANNDGKTPLYMAADYRSSDM 173
H++ KE+ +AL A D+V +L + D D Y N G TPL A
Sbjct: 63 HILA---KERESALSLASTGGYTDIVGLLLERDVDINIYDWN--GGTPLLYAVHGNHVKC 117
Query: 174 VLALLENSTSASHEGPNGKTALHAAAMKSY 203
V ALL + E +G T + A Y
Sbjct: 118 VEALLARGADLTTEADSGYTPMDLAVALGY 147
>pdb|2VGE|A Chain A, Crystal Structure Of The C-Terminal Region Of Human Iaspp
Length = 229
Score = 36.6 bits (83), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 20/63 (31%), Positives = 35/63 (55%), Gaps = 1/63 (1%)
Query: 121 NKEKNTALHEAVCHQNVDVVEILTKEDPDYPYSANNDGKTPLYMAADYRSSDMVLALLEN 180
N+E TALH A+C N +V+ L + S ++ G TPL+ AA + + +AL+++
Sbjct: 51 NEEGITALHNAICGANYSIVDFLITAGANV-NSPDSHGWTPLHCAASCNDTVICMALVQH 109
Query: 181 STS 183
+
Sbjct: 110 GAA 112
>pdb|1S70|B Chain B, Complex Between Protein Ser/thr Phosphatase-1 (delta) And
The Myosin Phosphatase Targeting Subunit 1 (mypt1)
Length = 299
Score = 36.6 bits (83), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 23/64 (35%), Positives = 30/64 (46%)
Query: 154 ANNDGKTPLYMAADYRSSDMVLALLENSTSASHEGPNGKTALHAAAMKSYFGKFSYTLSV 213
AN DG T L+ A + DMV L+EN + + G LHAAA Y Y +S
Sbjct: 69 ANVDGLTALHQACIDDNVDMVKFLVENGANINQPDNEGWIPLHAAASCGYLDIAEYLISQ 128
Query: 214 GISI 217
G +
Sbjct: 129 GAHV 132
Score = 35.0 bits (79), Expect = 0.030, Method: Compositional matrix adjust.
Identities = 28/71 (39%), Positives = 36/71 (50%), Gaps = 20/71 (28%)
Query: 31 AKTKNTILHVNIRSKESENASTKFVEEILEKCPLLLLQ----VNAK---GETPLHVAAKF 83
AK+ T LHV A+ K E+L+ LL+Q VN K G TPLH AA +
Sbjct: 196 AKSGGTALHV---------AAAKGYTEVLK----LLIQARYDVNIKDYDGWTPLHAAAHW 242
Query: 84 GHSDIVRVLVE 94
G + R+LVE
Sbjct: 243 GKEEACRILVE 253
Score = 34.7 bits (78), Expect = 0.038, Method: Compositional matrix adjust.
Identities = 41/144 (28%), Positives = 65/144 (45%), Gaps = 20/144 (13%)
Query: 69 VNAKGETPLHVAAKFG-----HSDIVR--VLVERAK------LLQHENEELESG-IRTAR 114
VN++G+TPL +A + +++ R V +E A+ +L+ + L SG I R
Sbjct: 135 VNSEGDTPLDIAEEEAMEELLQNEVNRQGVDIEAARKEEERIMLRDARQWLNSGHINDVR 194
Query: 115 HMIRMTNKEKNTALHEAVCHQNVDVVEILTKEDPDYPYSANNDGKTPLYMAADYRSSDMV 174
H K TALH A +V+++L + D + DG TPL+ AA + +
Sbjct: 195 HA-----KSGGTALHVAAAKGYTEVLKLLIQARYDVNIK-DYDGWTPLHAAAHWGKEEAC 248
Query: 175 LALLENSTSASHEGPNGKTALHAA 198
L+EN G+TA A
Sbjct: 249 RILVENLCDMEAVNKVGQTAFDVA 272
>pdb|2HE0|A Chain A, Crystal Structure Of A Human Notch1 Ankyrin Domain Mutant
pdb|2HE0|B Chain B, Crystal Structure Of A Human Notch1 Ankyrin Domain Mutant
Length = 253
Score = 36.6 bits (83), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 39/153 (25%), Positives = 62/153 (40%), Gaps = 19/153 (12%)
Query: 44 SKESENASTKFVEEILEKCPLLLLQVNAKGETPLHVAAKFGHSDIVRVLVERAKLLQHEN 103
S+E E+A + + + + L Q + G T LH+AA + SD + L+E
Sbjct: 29 SEEEEDAPA-VISDFIYQGASLHNQTDRTGATALHLAAAYSRSDAAKRLLE--------- 78
Query: 104 EELESGIRTARHMIRMTNKEKNTALHEAVCHQNVDVVEILTKEDPDYPYSANNDGKTPLY 163
A + + T LH AV V +IL + + +DG TPL
Sbjct: 79 ---------ASADANIQDNMGRTPLHAAVSADAQGVFQILIRNRATDLDARMHDGTTPLI 129
Query: 164 MAADYRSSDMVLALLENSTSASHEGPNGKTALH 196
+AA M+ L+ + + GK+ALH
Sbjct: 130 LAARLAVEGMLEDLINSHADVNAVDDLGKSALH 162
Score = 35.0 bits (79), Expect = 0.030, Method: Compositional matrix adjust.
Identities = 21/50 (42%), Positives = 26/50 (52%)
Query: 158 GKTPLYMAADYRSSDMVLALLENSTSASHEGPNGKTALHAAAMKSYFGKF 207
G T L++AA Y SD LLE S A+ + G+T LHAA G F
Sbjct: 57 GATALHLAAAYSRSDAAKRLLEASADANIQDNMGRTPLHAAVSADAQGVF 106
>pdb|1OT8|A Chain A, Structure Of The Ankyrin Domain Of The Drosophila Notch
Receptor
pdb|1OT8|B Chain B, Structure Of The Ankyrin Domain Of The Drosophila Notch
Receptor
pdb|1OT8|C Chain C, Structure Of The Ankyrin Domain Of The Drosophila Notch
Receptor
Length = 239
Score = 36.6 bits (83), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 45/172 (26%), Positives = 75/172 (43%), Gaps = 18/172 (10%)
Query: 28 LLTAKTKNTILHVNIRSKESENASTKFVEEILEKCPLLLLQVNAKGETPLHVAAKFGHSD 87
L+ A + L + +E+++ + + ++L + L ++ GET LH+AA+F +D
Sbjct: 6 LMIAAVRGGGLDTGEDIENNEDSTAQVISDLLAQGAELNATMDKTGETSLHLAARFARAD 65
Query: 88 IVRVLVERAKLLQHENEELESGIRTARHMIRMTNKEKNTALHEAVCHQNVDVVEILTKED 147
+ L++ + S T R T LH AV + V +IL +
Sbjct: 66 AAKRLLDAGA-------DANSQDNTGR-----------TPLHAAVAADAMGVFQILLRNR 107
Query: 148 PDYPYSANNDGKTPLYMAADYRSSDMVLALLENSTSASHEGPNGKTALHAAA 199
+ +DG TPL +AA MV L+ + +GKTALH AA
Sbjct: 108 ATNLNARMHDGTTPLILAARLAIEGMVEDLITADADINAADNSGKTALHWAA 159
Score = 31.2 bits (69), Expect = 0.50, Method: Compositional matrix adjust.
Identities = 31/109 (28%), Positives = 44/109 (40%), Gaps = 19/109 (17%)
Query: 72 KGETPLHVAAKFGHSDIVRVLVERAKLLQHENEELESGIRTARHMIRMTNKEKNTALHEA 131
G TPL +AA+ +V L+ TA I + TALH A
Sbjct: 117 DGTTPLILAARLAIEGMVEDLI------------------TADADINAADNSGKTALHWA 158
Query: 132 VCHQNVDVVEILTKEDPDYPYSANNDGKTPLYMAADYRSSDMVLALLEN 180
N + V IL + + D +TPL++AA S + ALL+N
Sbjct: 159 AAVNNTEAVNILLMHHANRDAQDDKD-ETPLFLAAREGSYEASKALLDN 206
Score = 27.3 bits (59), Expect = 7.0, Method: Compositional matrix adjust.
Identities = 18/54 (33%), Positives = 27/54 (50%)
Query: 158 GKTPLYMAADYRSSDMVLALLENSTSASHEGPNGKTALHAAAMKSYFGKFSYTL 211
G+T L++AA + +D LL+ A+ + G+T LHAA G F L
Sbjct: 51 GETSLHLAARFARADAAKRLLDAGADANSQDNTGRTPLHAAVAADAMGVFQILL 104
>pdb|3HG0|D Chain D, Crystal Structure Of A Darpin In Complex With Orf49 From
Lactococcal Phage Tp901-1
Length = 136
Score = 35.8 bits (81), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 25/77 (32%), Positives = 38/77 (49%), Gaps = 18/77 (23%)
Query: 69 VNAKGETPLHVAAKFGHSDIVRVLVERAKLLQHENEELESGIRTARHMIRMTNKEKNTAL 128
++A GETPLH+ A +GH +IV V LL+H + + +K TA
Sbjct: 76 IDAIGETPLHLVAMYGHLEIVEV------LLKHGAD------------VNAQDKFGKTAF 117
Query: 129 HEAVCHQNVDVVEILTK 145
++ + N D+ EIL K
Sbjct: 118 DISIDNGNEDLAEILQK 134
Score = 35.0 bits (79), Expect = 0.033, Method: Compositional matrix adjust.
Identities = 31/116 (26%), Positives = 53/116 (45%), Gaps = 19/116 (16%)
Query: 80 AAKFGHSDIVRVLVERAKLLQHENEELESGIRTARHMIRMTNKEKNTALHEAVCHQNVDV 139
AA+ G D VR+L+ + E+ K T LH A + ++++
Sbjct: 21 AARAGQDDEVRILMANGADVNAED------------------KVGLTPLHLAAMNDHLEI 62
Query: 140 VEILTKEDPDYPYSANNDGKTPLYMAADYRSSDMVLALLENSTSASHEGPNGKTAL 195
VE+L K D + + G+TPL++ A Y ++V LL++ + + GKTA
Sbjct: 63 VEVLLKNGADVN-AIDAIGETPLHLVAMYGHLEIVEVLLKHGADVNAQDKFGKTAF 117
Score = 28.5 bits (62), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 30/109 (27%), Positives = 49/109 (44%), Gaps = 22/109 (20%)
Query: 68 QVNAK---GETPLHVAAKFGHSDIVRVLVERAKLLQHENEELESGIRTARHMIRMTNKEK 124
VNA+ G TPLH+AA H +IV VL L++G + +
Sbjct: 39 DVNAEDKVGLTPLHLAAMNDHLEIVEVL-------------LKNGAD-----VNAIDAIG 80
Query: 125 NTALHEAVCHQNVDVVEILTKEDPDYPYSANNDGKTPLYMAADYRSSDM 173
T LH + ++++VE+L K D + + GKT ++ D + D+
Sbjct: 81 ETPLHLVAMYGHLEIVEVLLKHGADV-NAQDKFGKTAFDISIDNGNEDL 128
Score = 27.3 bits (59), Expect = 6.6, Method: Compositional matrix adjust.
Identities = 16/47 (34%), Positives = 24/47 (51%)
Query: 158 GKTPLYMAADYRSSDMVLALLENSTSASHEGPNGKTALHAAAMKSYF 204
G TPL++AA ++V LL+N + G+T LH AM +
Sbjct: 47 GLTPLHLAAMNDHLEIVEVLLKNGADVNAIDAIGETPLHLVAMYGHL 93
>pdb|2XZT|G Chain G, Caspase-3 In Complex With Darpin-3.4_i78s
pdb|2XZT|H Chain H, Caspase-3 In Complex With Darpin-3.4_i78s
Length = 136
Score = 35.4 bits (80), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 24/70 (34%), Positives = 38/70 (54%), Gaps = 1/70 (1%)
Query: 126 TALHEAVCHQNVDVVEILTKEDPDYPYSANNDGKTPLYMAADYRSSDMVLALLENSTSAS 185
T LH A ++++VE+L K D S ++ G+TPL++AA ++V LLE +
Sbjct: 49 TPLHLAAKRGHLEIVEVLLKHGADVNAS-DSWGRTPLHLAATVGHLEIVEVLLEYGADVN 107
Query: 186 HEGPNGKTAL 195
+ GKTA
Sbjct: 108 AQDKFGKTAF 117
Score = 34.7 bits (78), Expect = 0.045, Method: Compositional matrix adjust.
Identities = 29/101 (28%), Positives = 48/101 (47%), Gaps = 19/101 (18%)
Query: 73 GETPLHVAAKFGHSDIVRVLVERAKLLQHENEELESGIRTARHMIRMTNKEKNTALHEAV 132
G TPLH+AAK GH +IV V LL+H + + ++ T LH A
Sbjct: 47 GVTPLHLAAKRGHLEIVEV------LLKHGAD------------VNASDSWGRTPLHLAA 88
Query: 133 CHQNVDVVEILTKEDPDYPYSANNDGKTPLYMAADYRSSDM 173
++++VE+L + D + + GKT ++ D + D+
Sbjct: 89 TVGHLEIVEVLLEYGADVN-AQDKFGKTAFDISIDNGNEDL 128
Score = 33.1 bits (74), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 14/25 (56%), Positives = 19/25 (76%)
Query: 70 NAKGETPLHVAAKFGHSDIVRVLVE 94
++ G TPLH+AA GH +IV VL+E
Sbjct: 77 DSWGRTPLHLAATVGHLEIVEVLLE 101
Score = 28.1 bits (61), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 25/90 (27%), Positives = 38/90 (42%), Gaps = 1/90 (1%)
Query: 128 LHEAVCHQNVDVVEILTKEDPDYPYSANNDGKTPLYMAADYRSSDMVLALLENSTSASHE 187
L EA D V IL D + ++ G TPL++AA ++V LL++ +
Sbjct: 18 LLEATRAGQDDEVRILMANGADVN-AMDDAGVTPLHLAAKRGHLEIVEVLLKHGADVNAS 76
Query: 188 GPNGKTALHAAAMKSYFGKFSYTLSVGISI 217
G+T LH AA + L G +
Sbjct: 77 DSWGRTPLHLAATVGHLEIVEVLLEYGADV 106
>pdb|3Q9U|C Chain C, In Silico And In Vitro Co-Evolution Of A High Affinity
Complementary Protein-Protein Interface
pdb|3Q9U|D Chain D, In Silico And In Vitro Co-Evolution Of A High Affinity
Complementary Protein-Protein Interface
pdb|3Q9N|C Chain C, In Silico And In Vitro Co-Evolution Of A High Affinity
Complementary Protein-Protein Interface
pdb|3Q9N|D Chain D, In Silico And In Vitro Co-Evolution Of A High Affinity
Complementary Protein-Protein Interface
Length = 158
Score = 35.4 bits (80), Expect = 0.025, Method: Compositional matrix adjust.
Identities = 26/88 (29%), Positives = 43/88 (48%), Gaps = 1/88 (1%)
Query: 117 IRMTNKEKNTALHEAVCHQNVDVVEILTKEDPDYPYSANNDGKTPLYMAADYRSSDMVLA 176
+ T+ T LH A + +++VE+L K D S ++ G TPL++AA ++V
Sbjct: 32 VNATDDNGLTPLHLAAANGQLEIVEVLLKNGADVNAS-DSAGITPLHLAAYDGHLEIVEV 90
Query: 177 LLENSTSASHEGPNGKTALHAAAMKSYF 204
LL++ + G T LH AA+
Sbjct: 91 LLKHGADVNAYDRAGWTPLHLAALSGQL 118
Score = 33.5 bits (75), Expect = 0.098, Method: Compositional matrix adjust.
Identities = 41/148 (27%), Positives = 61/148 (41%), Gaps = 30/148 (20%)
Query: 5 LFKAAAAGNLEPFKDIAREVIKRLLTAKTKNTILHVNIRSKESENASTKFVEEILEKCPL 64
L +AAAAG + + + T T LH+ + N + VE +L+
Sbjct: 10 LLEAAAAGQDDEVRILMANGADVNATDDNGLTPLHL-----AAANGQLEIVEVLLKNGA- 63
Query: 65 LLLQVNAK---GETPLHVAAKFGHSDIVRVLVERAKLLQHENEELESGIRTARHMIRMTN 121
VNA G TPLH+AA GH +IV V LL+H + + +
Sbjct: 64 ---DVNASDSAGITPLHLAAYDGHLEIVEV------LLKHGAD------------VNAYD 102
Query: 122 KEKNTALHEAVCHQNVDVVEILTKEDPD 149
+ T LH A +++VE+L K D
Sbjct: 103 RAGWTPLHLAALSGQLEIVEVLLKHGAD 130
Score = 31.6 bits (70), Expect = 0.36, Method: Compositional matrix adjust.
Identities = 25/77 (32%), Positives = 34/77 (44%), Gaps = 1/77 (1%)
Query: 128 LHEAVCHQNVDVVEILTKEDPDYPYSANNDGKTPLYMAADYRSSDMVLALLENSTSASHE 187
L EA D V IL D + +N G TPL++AA ++V LL+N +
Sbjct: 10 LLEAAAAGQDDEVRILMANGADVNATDDN-GLTPLHLAAANGQLEIVEVLLKNGADVNAS 68
Query: 188 GPNGKTALHAAAMKSYF 204
G T LH AA +
Sbjct: 69 DSAGITPLHLAAYDGHL 85
>pdb|1WDY|A Chain A, Crystal Structure Of Ribonuclease
Length = 285
Score = 35.0 bits (79), Expect = 0.029, Method: Compositional matrix adjust.
Identities = 26/95 (27%), Positives = 40/95 (42%)
Query: 123 EKNTALHEAVCHQNVDVVEILTKEDPDYPYSANNDGKTPLYMAADYRSSDMVLALLENST 182
E N L +AV +++VD+V+ L + + + G TPL+ A D+V LL +
Sbjct: 4 EDNHLLIKAVQNEDVDLVQQLLEGGANVNFQEEEGGWTPLHNAVQMSREDIVELLLRHGA 63
Query: 183 SASHEGPNGKTALHAAAMKSYFGKFSYTLSVGISI 217
NG T AA+ LS G +
Sbjct: 64 DPVLRKKNGATPFLLAAIAGSVKLLKLFLSKGADV 98
Score = 32.0 bits (71), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 34/127 (26%), Positives = 57/127 (44%), Gaps = 21/127 (16%)
Query: 73 GETPLHVAAKFGHSDIVRVLVERAKLLQHENEELESGIRTARHMIRMTNKEKNTALHEAV 132
G T L AA+ GH +++++L++ E+ + + +M R N +H +
Sbjct: 148 GATALMDAAEKGHVEVLKILLD----------EMGADVNACDNMGR------NALIHALL 191
Query: 133 CHQNVDVVEILTKEDPDYPYSAN---NDGKTPLYMAADYRSSDMVLALLENS-TSASHEG 188
+ DV E +T D+ N GKTPL +A + + +V LLE +
Sbjct: 192 SSDDSDV-EAITHLLLDHGADVNVRGERGKTPLILAVEKKHLGLVQRLLEQEHIEINDTD 250
Query: 189 PNGKTAL 195
+GKTAL
Sbjct: 251 SDGKTAL 257
Score = 30.4 bits (67), Expect = 0.91, Method: Compositional matrix adjust.
Identities = 16/49 (32%), Positives = 24/49 (48%)
Query: 45 KESENASTKFVEEILEKCPLLLLQVNAKGETPLHVAAKFGHSDIVRVLV 93
K +N V+++LE + Q G TPLH A + DIV +L+
Sbjct: 11 KAVQNEDVDLVQQLLEGGANVNFQEEEGGWTPLHNAVQMSREDIVELLL 59
>pdb|4A63|B Chain B, Crystal Structure Of The P73-Aspp2 Complex At 2.6a
Resolution
pdb|4A63|D Chain D, Crystal Structure Of The P73-Aspp2 Complex At 2.6a
Resolution
pdb|4A63|F Chain F, Crystal Structure Of The P73-Aspp2 Complex At 2.6a
Resolution
pdb|4A63|H Chain H, Crystal Structure Of The P73-Aspp2 Complex At 2.6a
Resolution
pdb|4A63|J Chain J, Crystal Structure Of The P73-Aspp2 Complex At 2.6a
Resolution
pdb|4A63|L Chain L, Crystal Structure Of The P73-Aspp2 Complex At 2.6a
Resolution
Length = 239
Score = 35.0 bits (79), Expect = 0.029, Method: Compositional matrix adjust.
Identities = 21/65 (32%), Positives = 37/65 (56%), Gaps = 1/65 (1%)
Query: 119 MTNKEKNTALHEAVCHQNVDVVEILTKEDPDYPYSANNDGKTPLYMAADYRSSDMVLALL 178
+ N E TALH AVC + ++V+ L + + +A++DG TPL+ AA + + L+
Sbjct: 65 LPNDEGITALHNAVCAGHTEIVKFLVQFGVNV-NAADSDGWTPLHCAASCNNVQVCKFLV 123
Query: 179 ENSTS 183
E+ +
Sbjct: 124 ESGAA 128
>pdb|1YCS|B Chain B, P53-53bp2 Complex
Length = 239
Score = 35.0 bits (79), Expect = 0.029, Method: Compositional matrix adjust.
Identities = 21/65 (32%), Positives = 37/65 (56%), Gaps = 1/65 (1%)
Query: 119 MTNKEKNTALHEAVCHQNVDVVEILTKEDPDYPYSANNDGKTPLYMAADYRSSDMVLALL 178
+ N E TALH AVC + ++V+ L + + +A++DG TPL+ AA + + L+
Sbjct: 65 LPNDEGITALHNAVCAGHTEIVKFLVQFGVNV-NAADSDGWTPLHCAASCNNVQVCKFLV 123
Query: 179 ENSTS 183
E+ +
Sbjct: 124 ESGAA 128
>pdb|2RFM|A Chain A, Structure Of A Thermophilic Ankyrin Repeat Protein
pdb|2RFM|B Chain B, Structure Of A Thermophilic Ankyrin Repeat Protein
Length = 192
Score = 35.0 bits (79), Expect = 0.034, Method: Compositional matrix adjust.
Identities = 15/25 (60%), Positives = 21/25 (84%)
Query: 70 NAKGETPLHVAAKFGHSDIVRVLVE 94
N +GETPL VA+K+G S+IV+ L+E
Sbjct: 131 NLEGETPLIVASKYGRSEIVKKLLE 155
Score = 31.6 bits (70), Expect = 0.34, Method: Compositional matrix adjust.
Identities = 33/125 (26%), Positives = 55/125 (44%), Gaps = 19/125 (15%)
Query: 75 TPLHVAAKFGHSDIVRVLVERAKLLQHENEELESGIRTARHMIRMTNKEKNTALHEAVCH 134
TPL VA G + + LVE L E++++E +TAL AV +
Sbjct: 37 TPLMVACMLGMENAIDKLVENFDKL--EDKDIEG----------------STALIWAVKN 78
Query: 135 QNVDVVEILTKEDPDYPYSANNDGKTPLYMAADYRSSDMVLALLENSTSASHEGPNGKTA 194
+ + E L + + + + GKTPL + + S+M LLE+ + + G+T
Sbjct: 79 NRLGIAEKLLSKGSNVN-TKDFSGKTPLMWSIIFGYSEMSYFLLEHGANVNDRNLEGETP 137
Query: 195 LHAAA 199
L A+
Sbjct: 138 LIVAS 142
Score = 28.1 bits (61), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 19/52 (36%), Positives = 28/52 (53%), Gaps = 3/52 (5%)
Query: 155 NNDGKTPLYMAADYRSSDMVLALLENSTSASHEGPNGKTALHAAAMKSYFGK 206
N +G+TPL +A+ Y S++V LLE S G TA +A + FG+
Sbjct: 131 NLEGETPLIVASKYGRSEIVKKLLELGADISARDLTGLTAEASARI---FGR 179
>pdb|4G8K|A Chain A, Intact Sensor Domain Of Human Rnase L In The Inactive
Signaling State
pdb|4G8K|B Chain B, Intact Sensor Domain Of Human Rnase L In The Inactive
Signaling State
pdb|4G8L|A Chain A, Active State Of Intact Sensor Domain Of Human Rnase L With
2-5a Bound
pdb|4G8L|B Chain B, Active State Of Intact Sensor Domain Of Human Rnase L With
2-5a Bound
pdb|4G8L|C Chain C, Active State Of Intact Sensor Domain Of Human Rnase L With
2-5a Bound
pdb|4G8L|D Chain D, Active State Of Intact Sensor Domain Of Human Rnase L With
2-5a Bound
Length = 337
Score = 34.7 bits (78), Expect = 0.043, Method: Compositional matrix adjust.
Identities = 26/95 (27%), Positives = 40/95 (42%)
Query: 123 EKNTALHEAVCHQNVDVVEILTKEDPDYPYSANNDGKTPLYMAADYRSSDMVLALLENST 182
E N L +AV +++VD+V+ L + + + G TPL+ A D+V LL +
Sbjct: 24 EDNHLLIKAVQNEDVDLVQQLLEGGANVNFQEEEGGWTPLHNAVQMSREDIVELLLRHGA 83
Query: 183 SASHEGPNGKTALHAAAMKSYFGKFSYTLSVGISI 217
NG T AA+ LS G +
Sbjct: 84 DPVLRKKNGATPFILAAIAGSVKLLKLFLSKGADV 118
Score = 30.8 bits (68), Expect = 0.58, Method: Compositional matrix adjust.
Identities = 34/127 (26%), Positives = 57/127 (44%), Gaps = 21/127 (16%)
Query: 73 GETPLHVAAKFGHSDIVRVLVERAKLLQHENEELESGIRTARHMIRMTNKEKNTALHEAV 132
G T L AA+ GH +++++L++ E+ + + +M R N +H +
Sbjct: 168 GATALMDAAEKGHVEVLKILLD----------EMGADVNACDNMGR------NALIHALL 211
Query: 133 CHQNVDVVEILTKEDPDYPYSAN---NDGKTPLYMAADYRSSDMVLALLENS-TSASHEG 188
+ DV E +T D+ N GKTPL +A + + +V LLE +
Sbjct: 212 SSDDSDV-EAITHLLLDHGADVNVRGERGKTPLILAVEKKHLGLVQRLLEQEHIEINDTD 270
Query: 189 PNGKTAL 195
+GKTAL
Sbjct: 271 SDGKTAL 277
Score = 30.4 bits (67), Expect = 0.73, Method: Compositional matrix adjust.
Identities = 16/49 (32%), Positives = 24/49 (48%)
Query: 45 KESENASTKFVEEILEKCPLLLLQVNAKGETPLHVAAKFGHSDIVRVLV 93
K +N V+++LE + Q G TPLH A + DIV +L+
Sbjct: 31 KAVQNEDVDLVQQLLEGGANVNFQEEEGGWTPLHNAVQMSREDIVELLL 79
>pdb|3EU9|A Chain A, The Ankyrin Repeat Domain Of Huntingtin Interacting
Protein 14
pdb|3EU9|B Chain B, The Ankyrin Repeat Domain Of Huntingtin Interacting
Protein 14
pdb|3EU9|C Chain C, The Ankyrin Repeat Domain Of Huntingtin Interacting
Protein 14
Length = 240
Score = 34.7 bits (78), Expect = 0.045, Method: Compositional matrix adjust.
Identities = 30/128 (23%), Positives = 61/128 (47%), Gaps = 18/128 (14%)
Query: 69 VNAKGETPLHVAAKFGHSDIVRVLVERAKLLQHENEELESGIRTARHM------------ 116
++ +G + +H+AA+FGH+ IV L+ + + + ++ + + A +
Sbjct: 105 IDGEGCSCIHLAAQFGHTSIVAYLIAKGQDVDMMDQNGMTPLMWAAYRTHSVDPTRLLLT 164
Query: 117 ----IRMTNK-EKNTALHEAVCHQNVDVVEILTKEDPDYPYSANNDGKTPLYMAADYRSS 171
+ + +K KNTALH AV N V+ +L + + + N G++ L +A ++
Sbjct: 165 FNVSVNLGDKYHKNTALHWAVLAGNTTVISLLLEAGANVD-AQNIKGESALDLAKQRKNV 223
Query: 172 DMVLALLE 179
M+ L E
Sbjct: 224 WMINHLQE 231
Score = 31.6 bits (70), Expect = 0.39, Method: Compositional matrix adjust.
Identities = 24/102 (23%), Positives = 43/102 (42%)
Query: 113 ARHMIRMTNKEKNTALHEAVCHQNVDVVEILTKEDPDYPYSANNDGKTPLYMAADYRSSD 172
A + +R +KE T LH A + +D+V+ + + TPL+ A
Sbjct: 31 AGYDVRQPDKENVTLLHWAAINNRIDLVKYYISKGAIVDQLGGDLNSTPLHWATRQGHLS 90
Query: 173 MVLALLENSTSASHEGPNGKTALHAAAMKSYFGKFSYTLSVG 214
MV+ L++ S G + +H AA + +Y ++ G
Sbjct: 91 MVVQLMKYGADPSLIDGEGCSCIHLAAQFGHTSIVAYLIAKG 132
>pdb|2XZD|G Chain G, Caspase-3 In Complex With An Inhibitory Darpin-3.4
pdb|2XZD|H Chain H, Caspase-3 In Complex With An Inhibitory Darpin-3.4
Length = 136
Score = 34.3 bits (77), Expect = 0.057, Method: Compositional matrix adjust.
Identities = 24/70 (34%), Positives = 37/70 (52%), Gaps = 1/70 (1%)
Query: 126 TALHEAVCHQNVDVVEILTKEDPDYPYSANNDGKTPLYMAADYRSSDMVLALLENSTSAS 185
T LH A ++++VE+L K D S + G+TPL++AA ++V LLE +
Sbjct: 49 TPLHLAAKRGHLEIVEVLLKHGADVNAS-DIWGRTPLHLAATVGHLEIVEVLLEYGADVN 107
Query: 186 HEGPNGKTAL 195
+ GKTA
Sbjct: 108 AQDKFGKTAF 117
Score = 33.5 bits (75), Expect = 0.083, Method: Compositional matrix adjust.
Identities = 29/101 (28%), Positives = 48/101 (47%), Gaps = 19/101 (18%)
Query: 73 GETPLHVAAKFGHSDIVRVLVERAKLLQHENEELESGIRTARHMIRMTNKEKNTALHEAV 132
G TPLH+AAK GH +IV V LL+H + + ++ T LH A
Sbjct: 47 GVTPLHLAAKRGHLEIVEV------LLKHGAD------------VNASDIWGRTPLHLAA 88
Query: 133 CHQNVDVVEILTKEDPDYPYSANNDGKTPLYMAADYRSSDM 173
++++VE+L + D + + GKT ++ D + D+
Sbjct: 89 TVGHLEIVEVLLEYGADVN-AQDKFGKTAFDISIDNGNEDL 128
Score = 27.3 bits (59), Expect = 6.0, Method: Compositional matrix adjust.
Identities = 25/90 (27%), Positives = 38/90 (42%), Gaps = 1/90 (1%)
Query: 128 LHEAVCHQNVDVVEILTKEDPDYPYSANNDGKTPLYMAADYRSSDMVLALLENSTSASHE 187
L EA D V IL D + ++ G TPL++AA ++V LL++ +
Sbjct: 18 LLEATRAGQDDEVRILMANGADVN-AMDDAGVTPLHLAAKRGHLEIVEVLLKHGADVNAS 76
Query: 188 GPNGKTALHAAAMKSYFGKFSYTLSVGISI 217
G+T LH AA + L G +
Sbjct: 77 DIWGRTPLHLAATVGHLEIVEVLLEYGADV 106
>pdb|3EHQ|A Chain A, Crystal Structure Of Human Osteoclast Stimulating Factor
pdb|3EHQ|B Chain B, Crystal Structure Of Human Osteoclast Stimulating Factor
pdb|3EHR|A Chain A, Crystal Structure Of Human Osteoclast Stimulating Factor
pdb|3EHR|B Chain B, Crystal Structure Of Human Osteoclast Stimulating Factor
Length = 222
Score = 33.9 bits (76), Expect = 0.071, Method: Compositional matrix adjust.
Identities = 26/96 (27%), Positives = 44/96 (45%), Gaps = 5/96 (5%)
Query: 1 MDPNLFKAAAAGNLEPFKDIAREVIKRLLTAKTKNTILHVNIRSKESENASTKFVEEILE 60
+D L +AA GNL ++ + K +T L+ + VE +
Sbjct: 73 IDNPLHEAAKRGNLSWLRECLDNRVGVNGLDKAGSTALYWACHGGHKD-----IVEXLFT 127
Query: 61 KCPLLLLQVNAKGETPLHVAAKFGHSDIVRVLVERA 96
+ + L Q N G+T LH AA G++DIV++L+ +
Sbjct: 128 QPNIELNQQNKLGDTALHAAAWKGYADIVQLLLAKG 163
Score = 30.0 bits (66), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 20/75 (26%), Positives = 30/75 (40%), Gaps = 17/75 (22%)
Query: 69 VNAKGETPLHVAAKFGHSDIVRVLVERAKLLQHENEELESGIRTARHMIRMTNKEKNTAL 128
++ G T L+ A GH DIV L + + + NK +TAL
Sbjct: 102 LDKAGSTALYWACHGGHKDIVEXLFTQPNI-----------------ELNQQNKLGDTAL 144
Query: 129 HEAVCHQNVDVVEIL 143
H A D+V++L
Sbjct: 145 HAAAWKGYADIVQLL 159
Score = 28.9 bits (63), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 18/47 (38%), Positives = 23/47 (48%), Gaps = 1/47 (2%)
Query: 158 GKTPLYMAADYRSSDMVLALL-ENSTSASHEGPNGKTALHAAAMKSY 203
G T LY A D+V L + + + + G TALHAAA K Y
Sbjct: 106 GSTALYWACHGGHKDIVEXLFTQPNIELNQQNKLGDTALHAAAWKGY 152
>pdb|2Y0B|G Chain G, Caspase-3 In Complex With An Inhibitory Darpin-3.4_s76r
pdb|2Y0B|H Chain H, Caspase-3 In Complex With An Inhibitory Darpin-3.4_s76r
Length = 136
Score = 33.9 bits (76), Expect = 0.078, Method: Compositional matrix adjust.
Identities = 17/30 (56%), Positives = 21/30 (70%), Gaps = 3/30 (10%)
Query: 68 QVNAK---GETPLHVAAKFGHSDIVRVLVE 94
VNA+ G TPLH+AA GH +IV VL+E
Sbjct: 72 DVNARDIWGRTPLHLAATVGHLEIVEVLLE 101
Score = 33.1 bits (74), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 23/70 (32%), Positives = 37/70 (52%), Gaps = 1/70 (1%)
Query: 126 TALHEAVCHQNVDVVEILTKEDPDYPYSANNDGKTPLYMAADYRSSDMVLALLENSTSAS 185
T LH A ++++VE+L K D + + G+TPL++AA ++V LLE +
Sbjct: 49 TPLHLAAKRGHLEIVEVLLKHGADVN-ARDIWGRTPLHLAATVGHLEIVEVLLEYGADVN 107
Query: 186 HEGPNGKTAL 195
+ GKTA
Sbjct: 108 AQDKFGKTAF 117
Score = 32.7 bits (73), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 29/101 (28%), Positives = 47/101 (46%), Gaps = 19/101 (18%)
Query: 73 GETPLHVAAKFGHSDIVRVLVERAKLLQHENEELESGIRTARHMIRMTNKEKNTALHEAV 132
G TPLH+AAK GH +IV V LL+H + + + T LH A
Sbjct: 47 GVTPLHLAAKRGHLEIVEV------LLKHGAD------------VNARDIWGRTPLHLAA 88
Query: 133 CHQNVDVVEILTKEDPDYPYSANNDGKTPLYMAADYRSSDM 173
++++VE+L + D + + GKT ++ D + D+
Sbjct: 89 TVGHLEIVEVLLEYGADVN-AQDKFGKTAFDISIDNGNEDL 128
Score = 27.7 bits (60), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 25/90 (27%), Positives = 38/90 (42%), Gaps = 1/90 (1%)
Query: 128 LHEAVCHQNVDVVEILTKEDPDYPYSANNDGKTPLYMAADYRSSDMVLALLENSTSASHE 187
L EA D V IL D + ++ G TPL++AA ++V LL++ +
Sbjct: 18 LLEATRAGQDDEVRILMANGADVN-AMDDAGVTPLHLAAKRGHLEIVEVLLKHGADVNAR 76
Query: 188 GPNGKTALHAAAMKSYFGKFSYTLSVGISI 217
G+T LH AA + L G +
Sbjct: 77 DIWGRTPLHLAATVGHLEIVEVLLEYGADV 106
>pdb|3C5R|A Chain A, Crystal Structure Of The Bard1 Ankyrin Repeat Domain And
Its Functional Consequences
pdb|3C5R|B Chain B, Crystal Structure Of The Bard1 Ankyrin Repeat Domain And
Its Functional Consequences
Length = 137
Score = 33.9 bits (76), Expect = 0.082, Method: Compositional matrix adjust.
Identities = 21/71 (29%), Positives = 35/71 (49%), Gaps = 18/71 (25%)
Query: 73 GETPLHVAAKFGHSDIVRVLVERAKLLQHENEELESGIRTARHMIRMTNKEKNTALHEAV 132
G TPLH A GH +V + LLQH + ++ T + ++ LH+A
Sbjct: 43 GWTPLHEACNHGHLKVVEL------LLQH------------KALVNTTGYQNDSPLHDAA 84
Query: 133 CHQNVDVVEIL 143
+ +VD+V++L
Sbjct: 85 KNGHVDIVKLL 95
Score = 32.3 bits (72), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 28/98 (28%), Positives = 42/98 (42%), Gaps = 1/98 (1%)
Query: 119 MTNKEKNTALHEAVCHQNVDVVEILTKEDPDYPYSANNDGKTPLYMAADYRSSDMVLALL 178
TN T LH A ++ VE L + D P ++ G TPL+ A ++ +V LL
Sbjct: 5 FTNHRGETLLHIASIKGDIPSVEYLLQNGSD-PNVKDHAGWTPLHEACNHGHLKVVELLL 63
Query: 179 ENSTSASHEGPNGKTALHAAAMKSYFGKFSYTLSVGIS 216
++ + G + LH AA + LS G S
Sbjct: 64 QHKALVNTTGYQNDSPLHDAAKNGHVDIVKLLLSYGAS 101
Score = 31.2 bits (69), Expect = 0.43, Method: Compositional matrix adjust.
Identities = 19/36 (52%), Positives = 24/36 (66%), Gaps = 7/36 (19%)
Query: 65 LLLQ----VNAKG---ETPLHVAAKFGHSDIVRVLV 93
LLLQ VN G ++PLH AAK GH DIV++L+
Sbjct: 61 LLLQHKALVNTTGYQNDSPLHDAAKNGHVDIVKLLL 96
>pdb|2XEN|A Chain A, Structural Determinants For Improved Thermal Stability Of
Designed Ankyrin Repeat Proteins With A Redesigned C-
Capping Module
Length = 91
Score = 33.5 bits (75), Expect = 0.088, Method: Compositional matrix adjust.
Identities = 27/80 (33%), Positives = 38/80 (47%), Gaps = 21/80 (26%)
Query: 69 VNAK---GETPLHVAAKFGHSDIVRVLVERAKLLQHENEELESGIRTARHMIRMTNKEKN 125
VNAK G TPLH+AA+ GH +IV VL++ A + +K
Sbjct: 28 VNAKDKDGYTPLHLAAREGHLEIVEVLLK------------------AGADVNAQDKFGK 69
Query: 126 TALHEAVCHQNVDVVEILTK 145
TA ++ + N D+ EIL K
Sbjct: 70 TAFDISIDNGNEDLAEILQK 89
>pdb|2JAB|A Chain A, A Designed Ankyrin Repeat Protein Evolved To Picomolar
Affinity To Her2
pdb|2JAB|B Chain B, A Designed Ankyrin Repeat Protein Evolved To Picomolar
Affinity To Her2
pdb|2JAB|C Chain C, A Designed Ankyrin Repeat Protein Evolved To Picomolar
Affinity To Her2
Length = 136
Score = 32.7 bits (73), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 28/91 (30%), Positives = 42/91 (46%), Gaps = 18/91 (19%)
Query: 55 VEEILEKCPLLLLQVNAKGETPLHVAAKFGHSDIVRVLVERAKLLQHENEELESGIRTAR 114
+ E+L K + V+A G TPLH+AA GH +I V LL+H +
Sbjct: 62 IVEVLLKNGADVNAVDAIGFTPLHLAAFIGHLEIAEV------LLKHGAD---------- 105
Query: 115 HMIRMTNKEKNTALHEAVCHQNVDVVEILTK 145
+ +K TA ++ + N D+ EIL K
Sbjct: 106 --VNAQDKFGKTAFDISIGNGNEDLAEILQK 134
Score = 28.9 bits (63), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 21/76 (27%), Positives = 32/76 (42%), Gaps = 19/76 (25%)
Query: 158 GKTPLYMAADYRSSDMVLALLENSTSASHEGPNGKTALHAAAMKSY-------------- 203
G TPLY+A + ++V LL+N + G T LH AA +
Sbjct: 47 GLTPLYLATAHGHLEIVEVLLKNGADVNAVDAIGFTPLHLAAFIGHLEIAEVLLKHGADV 106
Query: 204 -----FGKFSYTLSVG 214
FGK ++ +S+G
Sbjct: 107 NAQDKFGKTAFDISIG 122
Score = 27.3 bits (59), Expect = 6.8, Method: Compositional matrix adjust.
Identities = 15/32 (46%), Positives = 20/32 (62%), Gaps = 3/32 (9%)
Query: 68 QVNAK---GETPLHVAAKFGHSDIVRVLVERA 96
VNAK G TPL++A GH +IV VL++
Sbjct: 39 DVNAKDEYGLTPLYLATAHGHLEIVEVLLKNG 70
>pdb|3UTM|A Chain A, Crystal Structure Of A Mouse Tankyrase-Axin Complex
pdb|3UTM|B Chain B, Crystal Structure Of A Mouse Tankyrase-Axin Complex
Length = 351
Score = 32.7 bits (73), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 28/92 (30%), Positives = 45/92 (48%), Gaps = 4/92 (4%)
Query: 126 TALHEAVCH---QNVDVVEILTKEDPDYPYSANNDGKTPLYMAADYRSSDMVLALLENST 182
TALH AV + V E+L ++ + N D TPL++AA+ +D++ L ++
Sbjct: 213 TALHCAVASLHPKRKQVAELLLRKGANV-NEKNKDFMTPLHVAAERAHNDVMEVLHKHGA 271
Query: 183 SASHEGPNGKTALHAAAMKSYFGKFSYTLSVG 214
+ G+TALH AA+ + LS G
Sbjct: 272 KMNALDSLGQTALHRAALAGHLQTCRLLLSYG 303
Score = 30.8 bits (68), Expect = 0.58, Method: Compositional matrix adjust.
Identities = 30/108 (27%), Positives = 44/108 (40%), Gaps = 26/108 (24%)
Query: 65 LLLQ----VNAK---GETPLHVAAKFGHSDIVRVLVERAKLLQHENEELESGIRTARHMI 117
LLLQ V+AK G PLH A +GH ++ +L++ +
Sbjct: 76 LLLQHGADVHAKDKGGLVPLHNACSYGHYEVTELLLKHGA------------------CV 117
Query: 118 RMTNKEKNTALHEAVCHQNVDVVEILTKEDPDYPYSANNDGKTPLYMA 165
+ + T LHEA V+V +L D P N GK+ + MA
Sbjct: 118 NAMDLWQFTPLHEAASKNRVEVCSLLLSHGAD-PTLVNCHGKSAVDMA 164
Score = 29.3 bits (64), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 28/90 (31%), Positives = 45/90 (50%), Gaps = 5/90 (5%)
Query: 4 NLFKAAAAGNLEPFKD-IAREVIKRLLTAKTKNTILHVNIRSKESENASTKFVEEILEKC 62
+L +AA +L K +A E+I ++ T LH + S + K V E+L +
Sbjct: 181 SLLQAAREADLAKVKKTLALEIIN-FKQPQSHETALHCAVASLHPKR---KQVAELLLRK 236
Query: 63 PLLLLQVNAKGETPLHVAAKFGHSDIVRVL 92
+ + N TPLHVAA+ H+D++ VL
Sbjct: 237 GANVNEKNKDFMTPLHVAAERAHNDVMEVL 266
>pdb|2ZGG|A Chain A, Asn-Hydroxylation Stabilises The Ankyrin Repeat Domain
Fold
Length = 92
Score = 32.3 bits (72), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 12/22 (54%), Positives = 19/22 (86%)
Query: 73 GETPLHVAAKFGHSDIVRVLVE 94
G TPLH+AA+ GH ++V++L+E
Sbjct: 39 GSTPLHLAARNGHLEVVKLLLE 60
>pdb|3UI2|A Chain A, Crystal Structure Of The Cpsrp54 Tail Bound To Cpsrp43
Length = 244
Score = 32.0 bits (71), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 21/71 (29%), Positives = 35/71 (49%), Gaps = 8/71 (11%)
Query: 60 EKCPLLLLQVNAK--------GETPLHVAAKFGHSDIVRVLVERAKLLQHENEELESGIR 111
+KC LL + A G T LH+AA + ++V LVE ++ E+E + +
Sbjct: 90 DKCVRLLAEAGADLDHRDMRGGLTALHMAAGYVRPEVVEALVELGADIEVEDERGLTALE 149
Query: 112 TARHMIRMTNK 122
AR +++ T K
Sbjct: 150 LAREILKTTPK 160
Score = 28.1 bits (61), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 20/59 (33%), Positives = 27/59 (45%)
Query: 140 VEILTKEDPDYPYSANNDGKTPLYMAADYRSSDMVLALLENSTSASHEGPNGKTALHAA 198
V +L + D + G T L+MAA Y ++V AL+E E G TAL A
Sbjct: 93 VRLLAEAGADLDHRDMRGGLTALHMAAGYVRPEVVEALVELGADIEVEDERGLTALELA 151
>pdb|3DEO|A Chain A, Structural Basis For Specific Substrate Recognition By The
Chloroplast Signal Recognition Particle Protein Cpsrp43
pdb|3DEP|A Chain A, Structural Basis For Specific Substrate Recognition By The
Chloroplast Signal Recognition Particle Protein Cpsrp43
Length = 183
Score = 32.0 bits (71), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 21/71 (29%), Positives = 35/71 (49%), Gaps = 8/71 (11%)
Query: 60 EKCPLLLLQVNAK--------GETPLHVAAKFGHSDIVRVLVERAKLLQHENEELESGIR 111
+KC LL + A G T LH+AA + ++V LVE ++ E+E + +
Sbjct: 89 DKCVRLLAEAGADLDHRDMRGGLTALHMAAGYVRPEVVEALVELGADIEVEDERGLTALE 148
Query: 112 TARHMIRMTNK 122
AR +++ T K
Sbjct: 149 LAREILKTTPK 159
Score = 28.5 bits (62), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 20/59 (33%), Positives = 27/59 (45%)
Query: 140 VEILTKEDPDYPYSANNDGKTPLYMAADYRSSDMVLALLENSTSASHEGPNGKTALHAA 198
V +L + D + G T L+MAA Y ++V AL+E E G TAL A
Sbjct: 92 VRLLAEAGADLDHRDMRGGLTALHMAAGYVRPEVVEALVELGADIEVEDERGLTALELA 150
>pdb|2ZGD|A Chain A, Asn-Hydroxylation Stabilises The Ankyrin Repeat Domain
Fold
Length = 110
Score = 32.0 bits (71), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 12/22 (54%), Positives = 19/22 (86%)
Query: 73 GETPLHVAAKFGHSDIVRVLVE 94
G TPLH+AA+ GH ++V++L+E
Sbjct: 57 GSTPLHLAARNGHLEVVKLLLE 78
>pdb|3LJN|A Chain A, Ankyrin Repeat Protein From Leishmania Major
Length = 364
Score = 32.0 bits (71), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 28/105 (26%), Positives = 47/105 (44%), Gaps = 21/105 (20%)
Query: 77 LHVAAKFGHSDIVRVLVERAKLLQHENEELESGIRTARHMIRMTNKEKNTALHEAVCHQN 136
+HVAA+ G +D VR L+ E+G+ + N+ TALH A
Sbjct: 24 IHVAARKGQTDEVRRLI-------------ETGVSPT-----IQNRFGCTALHLACKFGC 65
Query: 137 VDVVEILTKEDPDYPYSANNDGKTPLYMAADYRSSDMVLALLENS 181
VD + L + G+ P+++A +D+V+AL+E +
Sbjct: 66 VDTAKYLASVGEVHSLW---HGQKPIHLAVXANKTDLVVALVEGA 107
Score = 29.3 bits (64), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 36/155 (23%), Positives = 67/155 (43%), Gaps = 11/155 (7%)
Query: 73 GETPLHVAAKFGHSDIVRVLVERAKLLQHENEEL--ESGIRTARHM-IRMTNKEKNTALH 129
G+ P+H+A +D+V LVE AK E L E R + + + + TALH
Sbjct: 84 GQKPIHLAVXANKTDLVVALVEGAKERGQXPESLLNECDEREVNEIGSHVKHCKGQTALH 143
Query: 130 EAV--CHQNVDVVEILTKEDPDYPYSANNDGKTPLYMAADYRSSDMVLALLENSTSAS-- 185
V + ++ ++IL + P + + +TPL A ++R+ + + + S S
Sbjct: 144 WCVGLGPEYLEXIKILVQLGAS-PTAKDKADETPLXRAXEFRNREALDLXXDTVPSKSSL 202
Query: 186 ---HEGPNGKTALHAAAMKSYFGKFSYTLSVGISI 217
+ G + LH A + ++ + GI +
Sbjct: 203 RLDYANKQGNSHLHWAILINWEDVAXRFVEXGIDV 237
Score = 27.3 bits (59), Expect = 7.3, Method: Compositional matrix adjust.
Identities = 19/70 (27%), Positives = 31/70 (44%), Gaps = 4/70 (5%)
Query: 149 DYP----YSANNDGKTPLYMAADYRSSDMVLALLENSTSASHEGPNGKTALHAAAMKSYF 204
D+P ++++ +++AA +D V L+E S + + G TALH A
Sbjct: 7 DFPKLNRIKSDDENXEKIHVAARKGQTDEVRRLIETGVSPTIQNRFGCTALHLACKFGCV 66
Query: 205 GKFSYTLSVG 214
Y SVG
Sbjct: 67 DTAKYLASVG 76
>pdb|2NYJ|A Chain A, Crystal Structure Of The Ankyrin Repeat Domain Of Trpv1
pdb|2PNN|A Chain A, Crystal Structure Of The Ankyrin Repeat Domain Of Trpv1
Length = 273
Score = 32.0 bits (71), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 28/88 (31%), Positives = 38/88 (43%), Gaps = 16/88 (18%)
Query: 126 TALHEAVCHQNVDVVEILTKEDPDYPYSANND-------------GKTPLYMAADYRSSD 172
TALH A+ +N +V +L + D +AN D G+ PL +AA
Sbjct: 103 TALHIAIERRNXTLVTLLVENGADVQAAANGDFFKKTKGRPGFYFGELPLSLAACTNQLA 162
Query: 173 MVLALLENSTSA---SHEGPNGKTALHA 197
+V LL+NS S G T LHA
Sbjct: 163 IVKFLLQNSWQPADISARDSVGNTVLHA 190
Score = 28.5 bits (62), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 24/71 (33%), Positives = 37/71 (52%), Gaps = 10/71 (14%)
Query: 35 NTILHVNIRSKESENASTKFV----EEIL----EKCPLLLLQ--VNAKGETPLHVAAKFG 84
NT+LH + ++ +TKFV EIL + P L L+ N KG TPL +AA G
Sbjct: 185 NTVLHALVEVADNTVDNTKFVTSXYNEILILGAKLHPTLKLEEITNRKGLTPLALAASSG 244
Query: 85 HSDIVRVLVER 95
++ +++R
Sbjct: 245 KIGVLAYILQR 255
>pdb|4HBD|A Chain A, Crystal Structure Of Kank2 Ankyrin Repeats
Length = 276
Score = 31.2 bits (69), Expect = 0.52, Method: Compositional matrix adjust.
Identities = 30/99 (30%), Positives = 43/99 (43%), Gaps = 8/99 (8%)
Query: 107 ESGIRTARHMIRMTN------KEKNTALHEAVCHQNVDVVEILTKEDPDYPYSANNDGKT 160
+ I T + R+ N + TAL AV H VDVV+ L + D ++DG T
Sbjct: 160 QDDIETVLQLFRLGNINAKASQAGQTALMLAVSHGRVDVVKALLACEADVNVQ-DDDGST 218
Query: 161 PLYMAADYRSSDMV-LALLENSTSASHEGPNGKTALHAA 198
L A ++ ++ L L S S +G TAL A
Sbjct: 219 ALMCACEHGHKEIAGLLLAVPSCDISLTDRDGSTALMVA 257
Score = 28.5 bits (62), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 16/56 (28%), Positives = 26/56 (46%)
Query: 111 RTARHMIRMTNKEKNTALHEAVCHQNVDVVEILTKEDPDYPYSANNDGKTPLYMAA 166
R +++ + + NTALH +V H N VV+ L N G +P+ + A
Sbjct: 98 RLLDYVVNIADSNGNTALHYSVSHANFPVVQQLLDSGVCKVDKQNRAGYSPIMLTA 153
>pdb|1XDI|A Chain A, Crystal Structure Of Lpda (Rv3303c) From Mycobacterium
Tuberculosis
pdb|1XDI|B Chain B, Crystal Structure Of Lpda (Rv3303c) From Mycobacterium
Tuberculosis
Length = 499
Score = 30.8 bits (68), Expect = 0.58, Method: Compositional matrix adjust.
Identities = 20/63 (31%), Positives = 31/63 (49%), Gaps = 6/63 (9%)
Query: 97 KLLQHENEELESGIRTARHMIRMTNKEKNTALHEAVCHQNVDVVEILTKEDPDYPYSANN 156
+++ E ++S ARH I+ T + +T+ HEA DVV + T P SA
Sbjct: 111 QVIAGRGELIDSTPGLARHRIKATAADGSTSEHEA------DVVLVATGASPRILPSAQP 164
Query: 157 DGK 159
DG+
Sbjct: 165 DGE 167
>pdb|2ETA|A Chain A, Crystal Structure Of The Ankyrin Repeat Domain Of The
Trpv2
pdb|2ETA|B Chain B, Crystal Structure Of The Ankyrin Repeat Domain Of The
Trpv2
pdb|2ETB|A Chain A, Crystal Structure Of The Ankyrin Repeat Domain Of Trpv2
Length = 256
Score = 30.4 bits (67), Expect = 0.74, Method: Compositional matrix adjust.
Identities = 28/93 (30%), Positives = 43/93 (46%), Gaps = 15/93 (16%)
Query: 123 EKNTALHEAVCHQNVDVVEILTKEDPDYPYSANND------------GKTPLYMAADYRS 170
+ ++ALH A+ +++ V++L + D A G+ PL +AA +
Sbjct: 89 QGHSALHIAIEKRSLQCVKLLVENGADVHLRACGRFFQKHQGTCFYFGELPLSLAACTKQ 148
Query: 171 SDMVLALLENS-TSASHEGPN--GKTALHAAAM 200
D+V LLEN AS E + G T LHA M
Sbjct: 149 WDVVTYLLENPHQPASLEATDSLGNTVLHALVM 181
Score = 29.6 bits (65), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 25/76 (32%), Positives = 39/76 (51%), Gaps = 10/76 (13%)
Query: 30 TAKTKNTILH--VNIRSKESENAS--TKFVEEILEK----CPLLLLQ--VNAKGETPLHV 79
T NT+LH V I EN++ + +L+ CP + L+ N +G TPL +
Sbjct: 168 TDSLGNTVLHALVMIADNSPENSALVIHMYDGLLQMGARLCPTVQLEEISNHQGLTPLKL 227
Query: 80 AAKFGHSDIVRVLVER 95
AAK G +I R +++R
Sbjct: 228 AAKEGKIEIFRHILQR 243
>pdb|3D9H|A Chain A, Crystal Structure Of The Splice Variant Of Human Asb9
(Hasb9-2), An Ankyrin Repeat Protein
Length = 285
Score = 30.4 bits (67), Expect = 0.79, Method: Compositional matrix adjust.
Identities = 35/134 (26%), Positives = 52/134 (38%), Gaps = 31/134 (23%)
Query: 69 VNAKGETPLHVAAKFGHSDIVRVLVERAKLLQHENEELESGIRTARHMIRMTNKEKNTAL 128
V A TPL A G D V +L++ +Q E++ + +
Sbjct: 121 VTADWHTPLFNACVSGSWDCVNLLLQHGASVQPESD-------------------LASPI 161
Query: 129 HEAVCHQNVDVVEILTKEDPDYPYSANNDGK-----TPLYMAADYRSSDMVLALLENSTS 183
HEA +V+ V L Y N D K TPLY+A + + V LLE+
Sbjct: 162 HEAARRGHVECVNSLIA------YGGNIDHKISHLGTPLYLACENQQRACVKKLLESGAD 215
Query: 184 ASHEGPNGKTALHA 197
+ +G + LHA
Sbjct: 216 VN-QGKGQDSPLHA 228
>pdb|2FO1|E Chain E, Crystal Structure Of The Csl-Notch-Mastermind Ternary
Complex Bound To Dna
Length = 373
Score = 30.4 bits (67), Expect = 0.86, Method: Compositional matrix adjust.
Identities = 19/58 (32%), Positives = 28/58 (48%)
Query: 126 TALHEAVCHQNVDVVEILTKEDPDYPYSANNDGKTPLYMAADYRSSDMVLALLENSTS 183
TALH A N +V+ L E + DGKTP+ +AA ++V L++ S
Sbjct: 281 TALHYAAQVSNXPIVKYLVGEKGSNKDKQDEDGKTPIXLAAQEGRIEVVXYLIQQGAS 338
>pdb|4DX1|A Chain A, Crystal Structure Of The Human Trpv4 Ankyrin Repeat Domain
pdb|4DX1|B Chain B, Crystal Structure Of The Human Trpv4 Ankyrin Repeat Domain
pdb|4DX2|A Chain A, Crystal Structure Of The Human Trpv4 Ankyrin Repeat Domain
pdb|4DX2|B Chain B, Crystal Structure Of The Human Trpv4 Ankyrin Repeat Domain
Length = 259
Score = 30.4 bits (67), Expect = 0.88, Method: Compositional matrix adjust.
Identities = 22/71 (30%), Positives = 35/71 (49%), Gaps = 10/71 (14%)
Query: 35 NTILHVNIRSKESENASTKFVEE----ILEKCPLLLLQ------VNAKGETPLHVAAKFG 84
NT+LH + ++ +TKFV + +L KC L +N G +PL +AAK G
Sbjct: 175 NTVLHALVAIADNTRENTKFVTKMYDLLLLKCARLFPDSNLEAVLNNDGLSPLMMAAKTG 234
Query: 85 HSDIVRVLVER 95
I + ++ R
Sbjct: 235 KIGIFQHIIRR 245
>pdb|3RG1|A Chain A, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|E Chain E, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|I Chain I, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|M Chain M, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|B Chain B, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|F Chain F, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|J Chain J, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|N Chain N, Crystal Structure Of The Rp105MD-1 Complex
Length = 612
Score = 30.0 bits (66), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 30/101 (29%), Positives = 48/101 (47%), Gaps = 7/101 (6%)
Query: 47 SENASTKFVEEILEKCPLL-LLQVNAKGETPLHVAAK---FGHSDIVRVLVERAKLLQHE 102
S N ++ ++CP L LL V T LHV A F + ++RVL LL
Sbjct: 383 SYNEPLGLEDQAFKECPQLELLDV---AFTHLHVKAPHSPFQNLHLLRVLNLSHCLLDTS 439
Query: 103 NEELESGIRTARHMIRMTNKEKNTALHEAVCHQNVDVVEIL 143
N+ L +G++ RH+ N ++ ++ + Q V +EIL
Sbjct: 440 NQHLLAGLQDLRHLNLQGNSFQDGSISKTNLLQMVGSLEIL 480
>pdb|2ETC|A Chain A, Crystal Structure Of The Ankyrin Repeat Domain Of Trpv2
pdb|2ETC|B Chain B, Crystal Structure Of The Ankyrin Repeat Domain Of Trpv2
Length = 274
Score = 30.0 bits (66), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 28/93 (30%), Positives = 43/93 (46%), Gaps = 15/93 (16%)
Query: 123 EKNTALHEAVCHQNVDVVEILTKEDPDYPYSANND------------GKTPLYMAADYRS 170
+ ++ALH A+ +++ V++L + D A G+ PL +AA +
Sbjct: 102 QGHSALHIAIEKRSLQCVKLLVENGADVHLRACGRFFQKHQGTCFYFGELPLSLAACTKQ 161
Query: 171 SDMVLALLENS-TSASHEGPN--GKTALHAAAM 200
D+V LLEN AS E + G T LHA M
Sbjct: 162 WDVVTYLLENPHQPASLEATDSLGNTVLHALVM 194
Score = 29.6 bits (65), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 25/76 (32%), Positives = 39/76 (51%), Gaps = 10/76 (13%)
Query: 30 TAKTKNTILH--VNIRSKESENAS--TKFVEEILEK----CPLLLLQ--VNAKGETPLHV 79
T NT+LH V I EN++ + +L+ CP + L+ N +G TPL +
Sbjct: 181 TDSLGNTVLHALVMIADNSPENSALVIHMYDGLLQMGARLCPTVQLEEISNHQGLTPLKL 240
Query: 80 AAKFGHSDIVRVLVER 95
AAK G +I R +++R
Sbjct: 241 AAKEGKIEIFRHILQR 256
>pdb|3JXI|A Chain A, Crystal Structure Of The Chicken Trpv4 Ankyrin Repeat
Domain
pdb|3JXI|B Chain B, Crystal Structure Of The Chicken Trpv4 Ankyrin Repeat
Domain
pdb|3JXI|C Chain C, Crystal Structure Of The Chicken Trpv4 Ankyrin Repeat
Domain
pdb|3JXI|D Chain D, Crystal Structure Of The Chicken Trpv4 Ankyrin Repeat
Domain
pdb|3JXJ|A Chain A, Crystal Structure Of The Chicken Trpv4 Ankyrin Repeat
Domain
pdb|3JXJ|B Chain B, Crystal Structure Of The Chicken Trpv4 Ankyrin Repeat
Domain
Length = 260
Score = 30.0 bits (66), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 22/71 (30%), Positives = 35/71 (49%), Gaps = 10/71 (14%)
Query: 35 NTILHVNIRSKESENASTKFVEE----ILEKCPLLLLQVNAK------GETPLHVAAKFG 84
NT+LH + ++ +TKFV + +L KC L N + G +PL +AAK G
Sbjct: 177 NTVLHALVAIADNTRENTKFVTKMYDLLLIKCAKLFPDTNLEALLNNDGLSPLMMAAKTG 236
Query: 85 HSDIVRVLVER 95
I + ++ R
Sbjct: 237 KIGIFQHIIRR 247
Score = 26.9 bits (58), Expect = 8.7, Method: Compositional matrix adjust.
Identities = 33/109 (30%), Positives = 40/109 (36%), Gaps = 30/109 (27%)
Query: 73 GETPLHVAAKFGHSDIVRVLVERAKLLQHENEELESGIRTARHMIRMTNKEKNTALHEAV 132
GE PL +AA IV L E H+ +L R + NT LH V
Sbjct: 140 GELPLSLAACTNQPHIVHYLTENG----HKQADL-----------RRQDSRGNTVLHALV 184
Query: 133 C-----HQNVDVVEIL--------TKEDPDYPYSA--NNDGKTPLYMAA 166
+N V + K PD A NNDG +PL MAA
Sbjct: 185 AIADNTRENTKFVTKMYDLLLIKCAKLFPDTNLEALLNNDGLSPLMMAA 233
>pdb|3LVQ|E Chain E, The Crystal Structure Of Asap3 In Complex With Arf6 In
Trans State
pdb|3LVR|E Chain E, The Crystal Structure Of Asap3 In Complex With Arf6 In
Trans State Soaked With Calcium
Length = 497
Score = 29.6 bits (65), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 23/78 (29%), Positives = 40/78 (51%), Gaps = 3/78 (3%)
Query: 37 ILHVNIRSKESENASTKFVEEILEKCPLLLLQVNAKGETPLHVAAKFGHSDIVRVLVERA 96
+LH+ + K + AS V+ I++ L + A G T LH AA + D +++L++
Sbjct: 174 VLHLAV--KVANQASLPLVDFIIQNGGHLDAKA-ADGNTALHYAALYNQPDCLKLLLKGR 230
Query: 97 KLLQHENEELESGIRTAR 114
L+ NE E+ + AR
Sbjct: 231 ALVGTVNEAGETALDIAR 248
Score = 27.3 bits (59), Expect = 7.4, Method: Compositional matrix adjust.
Identities = 23/75 (30%), Positives = 31/75 (41%), Gaps = 11/75 (14%)
Query: 157 DGKTPLYMAADYRSSDMVLALLENSTSASHEGPNGKTALHAAAMKSY-----------FG 205
DG T L+ AA Y D + LL+ G+TAL A K + G
Sbjct: 206 DGNTALHYAALYNQPDCLKLLLKGRALVGTVNEAGETALDIARKKHHKECEELLEQAQAG 265
Query: 206 KFSYTLSVGISILIS 220
F++ L V S +IS
Sbjct: 266 TFAFPLHVDYSWVIS 280
>pdb|1MX2|A Chain A, Structure Of F71n Mutant Of P18ink4c
pdb|1MX2|B Chain B, Structure Of F71n Mutant Of P18ink4c
Length = 168
Score = 29.3 bits (64), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 30/101 (29%), Positives = 50/101 (49%), Gaps = 11/101 (10%)
Query: 19 DIAREVIKRL----LTAKTKNTILHVNIRSKESENASTKFVEEILEKCPLLLLQVNAKGE 74
+IAR ++ R L +T N ++H R+ + T +LE + ++ N +G
Sbjct: 51 EIARRLLLRGANPDLKDRTGNAVIHDAARAGFLDTLQT-----LLEFQADVNIEDN-EGN 104
Query: 75 TPLHVAAKFGHSDIVRVLVER-AKLLQHENEELESGIRTAR 114
PLH+AAK GH +V LV+ A + H N + ++ AR
Sbjct: 105 LPLHLAAKEGHLRVVEFLVKHTASNVGHRNHKGDTACDLAR 145
>pdb|2F37|A Chain A, Crystal Structure Of The Ankyrin Repeat Domain Of Human
Trpv2
pdb|2F37|B Chain B, Crystal Structure Of The Ankyrin Repeat Domain Of Human
Trpv2
Length = 251
Score = 29.3 bits (64), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 25/76 (32%), Positives = 39/76 (51%), Gaps = 10/76 (13%)
Query: 30 TAKTKNTILH--VNIRSKESENAS--TKFVEEILEK----CPLLLLQ--VNAKGETPLHV 79
T NT+LH V I +EN + T + +L+ CP + L+ N + TPL +
Sbjct: 173 TDSQGNTVLHALVXISDNSAENIALVTSXYDGLLQAGARLCPTVQLEDIRNLQDLTPLKL 232
Query: 80 AAKFGHSDIVRVLVER 95
AAK G +I R +++R
Sbjct: 233 AAKEGKIEIFRHILQR 248
>pdb|2B0O|E Chain E, Crystal Structure Of Uplc1 Gap Domain
pdb|2B0O|F Chain F, Crystal Structure Of Uplc1 Gap Domain
pdb|2B0O|G Chain G, Crystal Structure Of Uplc1 Gap Domain
pdb|2B0O|H Chain H, Crystal Structure Of Uplc1 Gap Domain
Length = 301
Score = 29.3 bits (64), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 23/78 (29%), Positives = 40/78 (51%), Gaps = 3/78 (3%)
Query: 37 ILHVNIRSKESENASTKFVEEILEKCPLLLLQVNAKGETPLHVAAKFGHSDIVRVLVERA 96
+LH+ + K + AS V+ I++ L + A G T LH AA + D +++L++
Sbjct: 193 VLHLAV--KVANQASLPLVDFIIQNGGHLDAKA-ADGNTALHYAALYNQPDCLKLLLKGR 249
Query: 97 KLLQHENEELESGIRTAR 114
L+ NE E+ + AR
Sbjct: 250 ALVGTVNEAGETALDIAR 267
Score = 26.9 bits (58), Expect = 9.5, Method: Compositional matrix adjust.
Identities = 23/75 (30%), Positives = 31/75 (41%), Gaps = 11/75 (14%)
Query: 157 DGKTPLYMAADYRSSDMVLALLENSTSASHEGPNGKTALHAAAMKSY-----------FG 205
DG T L+ AA Y D + LL+ G+TAL A K + G
Sbjct: 225 DGNTALHYAALYNQPDCLKLLLKGRALVGTVNEAGETALDIARKKHHKECEELLEQAQAG 284
Query: 206 KFSYTLSVGISILIS 220
F++ L V S +IS
Sbjct: 285 TFAFPLHVDYSWVIS 299
>pdb|1IHB|A Chain A, Crystal Structure Of P18-Ink4c(Ink6)
pdb|1IHB|B Chain B, Crystal Structure Of P18-Ink4c(Ink6)
Length = 162
Score = 28.9 bits (63), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 17/44 (38%), Positives = 25/44 (56%), Gaps = 1/44 (2%)
Query: 72 KGETPLHVAAKFGHSDIVRVLVER-AKLLQHENEELESGIRTAR 114
+G PLH+AAK GH +V LV+ A + H N + ++ AR
Sbjct: 102 EGNLPLHLAAKEGHLRVVEFLVKHTASNVGHRNHKGDTACDLAR 145
>pdb|1BU9|A Chain A, Solution Structure Of P18-Ink4c, 21 Structures
pdb|1G3N|B Chain B, Structure Of A P18(Ink4c)-Cdk6-K-Cyclin Ternary Complex
pdb|1G3N|F Chain F, Structure Of A P18(Ink4c)-Cdk6-K-Cyclin Ternary Complex
Length = 168
Score = 28.9 bits (63), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 17/44 (38%), Positives = 25/44 (56%), Gaps = 1/44 (2%)
Query: 72 KGETPLHVAAKFGHSDIVRVLVER-AKLLQHENEELESGIRTAR 114
+G PLH+AAK GH +V LV+ A + H N + ++ AR
Sbjct: 102 EGNLPLHLAAKEGHLRVVEFLVKHTASNVGHRNHKGDTACDLAR 145
>pdb|1MX6|A Chain A, Structure Of P18ink4c (F92n)
pdb|1MX6|B Chain B, Structure Of P18ink4c (F92n)
Length = 168
Score = 28.9 bits (63), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 17/44 (38%), Positives = 25/44 (56%), Gaps = 1/44 (2%)
Query: 72 KGETPLHVAAKFGHSDIVRVLVER-AKLLQHENEELESGIRTAR 114
+G PLH+AAK GH +V LV+ A + H N + ++ AR
Sbjct: 102 EGNLPLHLAAKEGHLRVVEFLVKHTASNVGHRNHKGDTACDLAR 145
>pdb|1MX4|A Chain A, Structure Of P18ink4c (F82q)
pdb|1MX4|B Chain B, Structure Of P18ink4c (F82q)
Length = 168
Score = 28.5 bits (62), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 17/44 (38%), Positives = 25/44 (56%), Gaps = 1/44 (2%)
Query: 72 KGETPLHVAAKFGHSDIVRVLVER-AKLLQHENEELESGIRTAR 114
+G PLH+AAK GH +V LV+ A + H N + ++ AR
Sbjct: 102 EGNLPLHLAAKEGHLRVVEFLVKHTASNVGHRNHKGDTACDLAR 145
>pdb|2V0R|A Chain A, Crystal Structure Of A Hairpin Exchange Variant (Ltx) Of
The Targeting Line-1 Retrotransposon Endonuclease
pdb|2V0R|B Chain B, Crystal Structure Of A Hairpin Exchange Variant (Ltx) Of
The Targeting Line-1 Retrotransposon Endonuclease
Length = 240
Score = 28.1 bits (61), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 20/73 (27%), Positives = 33/73 (45%), Gaps = 3/73 (4%)
Query: 86 SDIVRVLVERAKLLQHENEELESGIRTARHMIRMTNKEKNTALHEAVCHQNVDVVEILTK 145
SD+ R L ++ N L + R+ R + +E N+ALH+A +D+ L
Sbjct: 130 SDLQRDLDSHTLIMGDFNTPLSTLDRSTRQKVNKDTQELNSALHQA---DLIDIYRTLHP 186
Query: 146 EDPDYPYSANNDG 158
+ +Y Y DG
Sbjct: 187 KSTEYTYVRVRDG 199
>pdb|1AP7|A Chain A, P19-Ink4d From Mouse, Nmr, 20 Structures
Length = 168
Score = 28.1 bits (61), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 12/25 (48%), Positives = 18/25 (72%)
Query: 70 NAKGETPLHVAAKFGHSDIVRVLVE 94
+A G +P+H AA+ G D ++VLVE
Sbjct: 73 DASGTSPVHDAARTGFLDTLKVLVE 97
>pdb|1BLX|B Chain B, P19ink4dCDK6 COMPLEX
Length = 166
Score = 28.1 bits (61), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 12/25 (48%), Positives = 18/25 (72%)
Query: 70 NAKGETPLHVAAKFGHSDIVRVLVE 94
+A G +P+H AA+ G D ++VLVE
Sbjct: 71 DASGTSPVHDAARTGFLDTLKVLVE 95
>pdb|1BD8|A Chain A, Structure Of Cdk Inhibitor P19ink4d
Length = 156
Score = 27.7 bits (60), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 31/125 (24%), Positives = 50/125 (40%), Gaps = 21/125 (16%)
Query: 50 ASTKFVEEILEKCPLLLLQVNAKGETPLHVAAKFGHSDIVRVLVERAKLLQHENEELESG 109
ST E+L++ +Q + G +P+H AA+ G D ++VLVE
Sbjct: 46 GSTAIALELLKQGASPNVQ-DTSGTSPVHDAARTGFLDTLKVLVEHGA------------ 92
Query: 110 IRTARHMIRMTNKEKNTALHEAVCHQNVDVVEILTKEDPDYPYSANNDGKTPLYMAADYR 169
+ + + +H AV + VV L E + A G TPL +A
Sbjct: 93 ------DVNVPDGTGALPIHLAVQEGHTAVVSFLAAESDLHRRDAR--GLTPLELALQRG 144
Query: 170 SSDMV 174
+ D+V
Sbjct: 145 AQDLV 149
>pdb|1BI8|B Chain B, Mechanism Of G1 Cyclin Dependent Kinase Inhibition From
The Structures Cdk6-P19ink4d Inhibitor Complex
pdb|1BI8|D Chain D, Mechanism Of G1 Cyclin Dependent Kinase Inhibition From
The Structures Cdk6-P19ink4d Inhibitor Complex
Length = 166
Score = 27.7 bits (60), Expect = 5.8, Method: Compositional matrix adjust.
Identities = 32/125 (25%), Positives = 52/125 (41%), Gaps = 21/125 (16%)
Query: 50 ASTKFVEEILEKCPLLLLQVNAKGETPLHVAAKFGHSDIVRVLVERAKLLQHENEELESG 109
ST E+L++ +Q + G +P+H AA+ G D ++VLVE H +
Sbjct: 52 GSTAIALELLKQGASPNVQ-DTSGTSPVHDAARTGFLDTLKVLVE------HGAD----- 99
Query: 110 IRTARHMIRMTNKEKNTALHEAVCHQNVDVVEILTKEDPDYPYSANNDGKTPLYMAADYR 169
+ + + +H AV + VV L E + A G TPL +A
Sbjct: 100 -------VNVPDGTGALPIHLAVQEGHTAVVSFLAAESDLHRRDAR--GLTPLELALQRG 150
Query: 170 SSDMV 174
+ D+V
Sbjct: 151 AQDLV 155
>pdb|2V0S|A Chain A, Crystal Structure Of A Hairpin Exchange Variant (Lr1) Of
The Targeting Line-1 Retrotransposon Endonuclease
Length = 236
Score = 27.7 bits (60), Expect = 5.9, Method: Compositional matrix adjust.
Identities = 19/71 (26%), Positives = 33/71 (46%), Gaps = 3/71 (4%)
Query: 86 SDIVRVLVERAKLLQHENEELESGIRTARHMIRMTNKEKNTALHEAVCHQNVDVVEILTK 145
SD+ R L ++ N L + R+ R + +E N+ALH+A +D+ L
Sbjct: 130 SDLQRDLDSHTLIMGDFNTPLSTLDRSTRQKVNKDTQELNSALHQADL---IDIYRTLHP 186
Query: 146 EDPDYPYSANN 156
+ +Y +S N
Sbjct: 187 KSTEYTFSTAN 197
>pdb|3V2X|A Chain A, Crystal Structure Of The Peptide Bound Complex Of The
Ankyrin Repeat Domains Of Human Ankra2
pdb|3V31|A Chain A, Crystal Structure Of The Peptide Bound Complex Of The
Ankyrin Repeat Domains Of Human Ankra2
Length = 167
Score = 27.3 bits (59), Expect = 6.3, Method: Compositional matrix adjust.
Identities = 18/63 (28%), Positives = 27/63 (42%)
Query: 155 NNDGKTPLYMAADYRSSDMVLALLENSTSASHEGPNGKTALHAAAMKSYFGKFSYTLSVG 214
+ +G TPL AA + +V LL+N G ++AL A K Y L G
Sbjct: 33 DEEGFTPLMWAAAHGQIAVVEFLLQNGADPQLLGKGRESALSLACSKGYTDIVKMLLDCG 92
Query: 215 ISI 217
+ +
Sbjct: 93 VDV 95
>pdb|3SO8|A Chain A, Crystal Structure Of Ankra
Length = 162
Score = 27.3 bits (59), Expect = 6.7, Method: Compositional matrix adjust.
Identities = 18/63 (28%), Positives = 27/63 (42%)
Query: 155 NNDGKTPLYMAADYRSSDMVLALLENSTSASHEGPNGKTALHAAAMKSYFGKFSYTLSVG 214
+ +G TPL AA + +V LL+N G ++AL A K Y L G
Sbjct: 31 DEEGFTPLMWAAAHGQIAVVEFLLQNGADPQLLGKGRESALSLACSKGYTDIVKMLLDCG 90
Query: 215 ISI 217
+ +
Sbjct: 91 VDV 93
>pdb|3V2O|A Chain A, Crystal Structure Of The Peptide Bound Complex Of The
Ankyrin Repeat Domains Of Human Ankra2
Length = 183
Score = 27.3 bits (59), Expect = 7.2, Method: Compositional matrix adjust.
Identities = 18/63 (28%), Positives = 27/63 (42%)
Query: 155 NNDGKTPLYMAADYRSSDMVLALLENSTSASHEGPNGKTALHAAAMKSYFGKFSYTLSVG 214
+ +G TPL AA + +V LL+N G ++AL A K Y L G
Sbjct: 49 DEEGFTPLMWAAAHGQIAVVEFLLQNGADPQLLGKGRESALSLACSKGYTDIVKMLLDCG 108
Query: 215 ISI 217
+ +
Sbjct: 109 VDV 111
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.315 0.130 0.358
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 6,056,021
Number of Sequences: 62578
Number of extensions: 227878
Number of successful extensions: 1261
Number of sequences better than 100.0: 117
Number of HSP's better than 100.0 without gapping: 90
Number of HSP's successfully gapped in prelim test: 27
Number of HSP's that attempted gapping in prelim test: 654
Number of HSP's gapped (non-prelim): 383
length of query: 222
length of database: 14,973,337
effective HSP length: 95
effective length of query: 127
effective length of database: 9,028,427
effective search space: 1146610229
effective search space used: 1146610229
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 49 (23.5 bits)