BLAST Results

Query Summary

Your job contains 1 sequence.

Parameters
Threshold: 0.001
Maximum number of alignments shown: 100
BLAST filter: on

Query Sequence

>027563
MAAKLLSSSSSPPTPQLLCSFSLHSKLKFKDSTQQQSWLRQAPNPPSSPTTRAKKKQLAV
AVAVQEPLLASTSALIEHINNLDQNRQSLYLLAESTAGYSLASYYTSLGLFVISVPGLWS
LIKRSVKSKIVQKTFVGEGESKKAPNQVAGEIFSFFTRNNFVVTDRGEVITFEGMMVPSR
GQAAFLTFCTCISLASVALVLTITYPDIGNNWFWITILSPLA

High Scoring Gene Products

Symbol, full name Information P value
CCB1
AT3G26710 		protein from Arabidopsis thaliana 7.8e-55

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Raw Blast Data

BLASTP 2.0MP-WashU [04-May-2006] [linux26-i686-ILP32F64 2006-05-09T11:47:08]

Copyright (C) 1996-2006 Washington University, Saint Louis, Missouri USA.
All Rights Reserved.

Reference:  Gish, W. (1996-2006) http://blast.wustl.edu

Query=  027563
        (222 letters)

Database:  go_20130330-seqdb.fasta
           368,745 sequences; 169,044,731 total letters.
Searching....10....20....30....40....50....60....70....80....90....100% done

                                                                     Smallest
                                                                       Sum
                                                              High  Probability
Sequences producing High-scoring Segment Pairs:              Score  P(N)      N

TAIR|locus:2090807 - symbol:CCB1 "AT3G26710" species:3702...   566  7.8e-55   1


>TAIR|locus:2090807 [details] [associations]
            symbol:CCB1 "AT3G26710" species:3702 "Arabidopsis
            thaliana" [GO:0003674 "molecular_function" evidence=ND] [GO:0009507
            "chloroplast" evidence=ISM;IDA] [GO:0010190 "cytochrome b6f complex
            assembly" evidence=IMP] [GO:0006364 "rRNA processing" evidence=RCA]
            [GO:0009657 "plastid organization" evidence=RCA] [GO:0010027
            "thylakoid membrane organization" evidence=RCA] [GO:0010207
            "photosystem II assembly" evidence=RCA] [GO:0019288 "isopentenyl
            diphosphate biosynthetic process, mevalonate-independent pathway"
            evidence=RCA] GO:GO:0009507 EMBL:CP002686 GenomeReviews:BA000014_GR
            EMBL:AB026648 UniGene:At.5353 GO:GO:0010190 EMBL:AY087129
            EMBL:AY140025 EMBL:BT006294 EMBL:AK227251 IPI:IPI00548184
            RefSeq:NP_566797.1 STRING:Q9LSE4 PaxDb:Q9LSE4 PRIDE:Q9LSE4
            EnsemblPlants:AT3G26710.1 GeneID:822283 KEGG:ath:AT3G26710
            TAIR:At3g26710 eggNOG:NOG78978 HOGENOM:HOG000243835
            InParanoid:Q9LSE4 OMA:GMVYVKG PhylomeDB:Q9LSE4
            ProtClustDB:CLSN2688803 ArrayExpress:Q9LSE4 Genevestigator:Q9LSE4
            InterPro:IPR021919 Pfam:PF12046 Uniprot:Q9LSE4
        Length = 267

 Score = 566 (204.3 bits), Expect = 7.8e-55, P = 7.8e-55
 Identities = 116/157 (73%), Positives = 127/157 (80%)

Query:    66 EPLLASTSALIEHINNLDQNRQSLYLLAESTAGYSLASYYTSLGLFVISVPGLWSLIKRS 125
             EPL   +S+ I+     +QN  SL L+ E+T GYSLASYYTSLGLFVISVPGLWSLIKRS
Sbjct:    49 EPLSVVSSSAIQIHQWWEQNPNSLLLMTEATGGYSLASYYTSLGLFVISVPGLWSLIKRS 108

Query:   126 VKSKIVQKTFVGEGESKKAPNQVAGEIFSFFTRNNFVVTDRGEVITFEGMMVPSRGQAAF 185
             VKSKIV+KTFV   + KK P QVAGEI SFFTR NF +TDRGE ITFEG MVPSRGQAA 
Sbjct:   109 VKSKIVRKTFV-VNDVKKEPKQVAGEILSFFTRKNFNITDRGETITFEGKMVPSRGQAAL 167

Query:   186 LTFCTCISLASVALVLTITYPDIGNNWFWITILSPLA 222
             LTFCTCISLASV LVLTIT PD GNNWF+I +LSPLA
Sbjct:   168 LTFCTCISLASVGLVLTITVPDFGNNWFFIILLSPLA 204


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.319   0.131   0.387    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0      222       193   0.00098  110 3  11 22  0.44    32
                                                     31  0.43    35


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  1
  No. of states in DFA:  601 (64 KB)
  Total size of DFA:  161 KB (2095 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  17.85u 0.12s 17.97t   Elapsed:  00:00:02
  Total cpu time:  17.85u 0.12s 17.97t   Elapsed:  00:00:02
  Start:  Tue May 21 00:49:47 2013   End:  Tue May 21 00:49:49 2013

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